File accession File format File type File format type Output type File assembly Experiment accession Assay Donor(s) Biosample term id Biosample term name Biosample type Biosample organism Biosample treatments Biosample treatments amount Biosample treatments duration Biosample genetic modifications methods Biosample genetic modifications categories Biosample genetic modifications targets Biosample genetic modifications gene targets Biosample genetic modifications site coordinates Biosample genetic modifications zygosity Experiment target Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate(s) Read length Mapped read length Run type Paired end Paired with Index of Derived from Size Lab md5sum dbxrefs File download URL Genome annotation Platform Controlled 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A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF260VTM/, /files/ENCFF110MCL/ 1428496338 ENCODE Processing Pipeline 84027772c73f63998aecdf8e8bfb2f97 https://www.encodeproject.org/files/ENCFF368SVE/@@download/ENCFF368SVE.bam released s3://encode-public/2020/09/29/d6630c5a-0561-48fe-b555-b21b1d42de77/ENCFF368SVE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF062VWV fastq fastq reads ENCSR169AMM Control ChIP-seq /worm-donors/ENCDO645BPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177375/'], '@type': ['Target', 'Item'], 'name': 'M03D4.4-celegans', 'label': 'M03D4.4', '@id': '/targets/M03D4.4-celegans/', 'title': 'M03D4.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '44177d10-b913-42c4-bb4f-7dd7761b43cf', 'status': 'released'} ce11 IV 6106931 6141310 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1288559981 Kevin White, UChicago 2aeb668309fcb4be79ae2946a2ac8763 https://www.encodeproject.org/files/ENCFF062VWV/@@download/ENCFF062VWV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/2f72927e-9525-47f5-9676-d2c40a4a62b4/ENCFF062VWV.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF066XPW bam bam alignments ce10 ENCSR169AMM Control ChIP-seq /worm-donors/ENCDO645BPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177375/'], '@type': ['Target', 'Item'], 'name': 'M03D4.4-celegans', 'label': 'M03D4.4', '@id': '/targets/M03D4.4-celegans/', 'title': 'M03D4.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '44177d10-b913-42c4-bb4f-7dd7761b43cf', 'status': 'released'} ce11 IV 6106931 6141310 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF062VWV/ 1693504836 Kevin White, UChicago afd30245c63ae4e9c4c7a8b099c6ae29 https://www.encodeproject.org/files/ENCFF066XPW/@@download/ENCFF066XPW.bam released s3://encode-public/2017/10/06/e621f2d6-e378-47ec-a103-f2d30fffbe5b/ENCFF066XPW.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF721LRH bam bam alignments ce11 ENCSR169AMM Control ChIP-seq /worm-donors/ENCDO645BPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177375/'], '@type': ['Target', 'Item'], 'name': 'M03D4.4-celegans', 'label': 'M03D4.4', '@id': '/targets/M03D4.4-celegans/', 'title': 'M03D4.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '44177d10-b913-42c4-bb4f-7dd7761b43cf', 'status': 'released'} ce11 IV 6106931 6141310 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF062VWV/ 1694826117 Kevin White, UChicago 89bd5adea4dfeb5fc876d749dde5b6ca https://www.encodeproject.org/files/ENCFF721LRH/@@download/ENCFF721LRH.bam released s3://encode-public/2017/10/06/454adad9-d8fa-4912-a859-30b32c05a7db/ENCFF721LRH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF905LPE bigWig bigWig signal of unique reads ce10 ENCSR169AMM Control ChIP-seq /worm-donors/ENCDO645BPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177375/'], '@type': ['Target', 'Item'], 'name': 'M03D4.4-celegans', 'label': 'M03D4.4', '@id': '/targets/M03D4.4-celegans/', 'title': 'M03D4.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '44177d10-b913-42c4-bb4f-7dd7761b43cf', 'status': 'released'} ce11 IV 6106931 6141310 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF066XPW/ 9956611 Kevin White, UChicago 4bbbe23c9140d3acacd940dea8f9babc https://www.encodeproject.org/files/ENCFF905LPE/@@download/ENCFF905LPE.bigWig released s3://encode-public/2017/10/09/9abc81aa-0a82-4fda-a7b3-28b2facf53b2/ENCFF905LPE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF099OZD bigWig bigWig read-depth normalized signal ce10 ENCSR169AMM Control ChIP-seq /worm-donors/ENCDO645BPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177375/'], '@type': ['Target', 'Item'], 'name': 'M03D4.4-celegans', 'label': 'M03D4.4', '@id': '/targets/M03D4.4-celegans/', 'title': 'M03D4.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '44177d10-b913-42c4-bb4f-7dd7761b43cf', 'status': 'released'} ce11 IV 6106931 6141310 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF066XPW/ 9934680 Kevin White, UChicago 68b4f06e3596efc155d57b3df46d2966 https://www.encodeproject.org/files/ENCFF099OZD/@@download/ENCFF099OZD.bigWig released s3://encode-public/2017/10/09/3dad2bdf-b741-4ff0-9a59-fe3b270a85ab/ENCFF099OZD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF454HAU bigWig bigWig read-depth normalized signal ce11 ENCSR169AMM Control ChIP-seq /worm-donors/ENCDO645BPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177375/'], '@type': ['Target', 'Item'], 'name': 'M03D4.4-celegans', 'label': 'M03D4.4', '@id': '/targets/M03D4.4-celegans/', 'title': 'M03D4.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '44177d10-b913-42c4-bb4f-7dd7761b43cf', 'status': 'released'} ce11 IV 6106931 6141310 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF721LRH/ 9952960 Kevin White, UChicago 440c81fd4dc27979f99a2375ef4b0f3d https://www.encodeproject.org/files/ENCFF964FSM/@@download/ENCFF964FSM.bigWig released s3://encode-public/2017/10/09/f8a53678-17c4-4fbc-8166-92d453cca8de/ENCFF964FSM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF457EZV fastq fastq reads ENCSR569VQG Control ChIP-seq /worm-donors/ENCDO003JWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181197/'], '@type': ['Target', 'Item'], 'name': 'vab-15-celegans', 'label': 'vab-15', '@id': '/targets/vab-15-celegans/', 'title': 'vab-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '73ab1481-d97d-457e-8fbc-14f079d7b340', 'status': 'released'} ce11 X 9849110 9849110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1386130261 Kevin White, UChicago 388e2e2716449e04ec4de08e4cb78568 https://www.encodeproject.org/files/ENCFF457EZV/@@download/ENCFF457EZV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/f27220e7-8ae6-4ab4-8190-709db731bb0c/ENCFF457EZV.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF144HBJ bam bam alignments ce10 ENCSR569VQG Control ChIP-seq /worm-donors/ENCDO003JWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181197/'], '@type': ['Target', 'Item'], 'name': 'vab-15-celegans', 'label': 'vab-15', '@id': '/targets/vab-15-celegans/', 'title': 'vab-15 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'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181197/'], '@type': ['Target', 'Item'], 'name': 'vab-15-celegans', 'label': 'vab-15', '@id': '/targets/vab-15-celegans/', 'title': 'vab-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '73ab1481-d97d-457e-8fbc-14f079d7b340', 'status': 'released'} ce11 X 9849110 9849110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF457EZV/ 1772551380 Kevin White, UChicago 9ea0ecdda2a27c3e1caee55ffdfe553d https://www.encodeproject.org/files/ENCFF091FIB/@@download/ENCFF091FIB.bam released s3://encode-public/2017/10/07/87e2692f-03bc-4bd1-8820-79326e2a3cce/ENCFF091FIB.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF214TNK bigWig bigWig signal of unique reads ce10 ENCSR569VQG Control ChIP-seq /worm-donors/ENCDO003JWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181197/'], '@type': ['Target', 'Item'], 'name': 'vab-15-celegans', 'label': 'vab-15', '@id': '/targets/vab-15-celegans/', 'title': 'vab-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '73ab1481-d97d-457e-8fbc-14f079d7b340', 'status': 'released'} ce11 X 9849110 9849110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF144HBJ/ 9974464 Kevin White, UChicago bb88099b9f523e158e8acb4de56340ab https://www.encodeproject.org/files/ENCFF214TNK/@@download/ENCFF214TNK.bigWig released s3://encode-public/2017/10/09/20d6d3a6-ebb0-475a-9eda-7dc5508c54f6/ENCFF214TNK.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF618YLC bigWig bigWig read-depth normalized signal ce10 ENCSR569VQG Control ChIP-seq /worm-donors/ENCDO003JWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181197/'], '@type': ['Target', 'Item'], 'name': 'vab-15-celegans', 'label': 'vab-15', '@id': '/targets/vab-15-celegans/', 'title': 'vab-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '73ab1481-d97d-457e-8fbc-14f079d7b340', 'status': 'released'} ce11 X 9849110 9849110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF144HBJ/ 9976746 Kevin White, UChicago cf741c40878fa9b77dba4aae5fc5b05c https://www.encodeproject.org/files/ENCFF618YLC/@@download/ENCFF618YLC.bigWig released s3://encode-public/2017/10/09/60d1768b-0d04-41ad-80a0-b5c717741ee8/ENCFF618YLC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF592RRG bigWig bigWig signal of unique reads ce11 ENCSR569VQG Control ChIP-seq /worm-donors/ENCDO003JWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181197/'], '@type': ['Target', 'Item'], 'name': 'vab-15-celegans', 'label': 'vab-15', '@id': '/targets/vab-15-celegans/', 'title': 'vab-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '73ab1481-d97d-457e-8fbc-14f079d7b340', 'status': 'released'} ce11 X 9849110 9849110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF091FIB/ 9969685 Kevin White, UChicago b54ad74c0993077fa32a2e83e93dd2d0 https://www.encodeproject.org/files/ENCFF592RRG/@@download/ENCFF592RRG.bigWig released s3://encode-public/2017/10/09/2d535478-2471-42ff-aa56-9efb85d7ced2/ENCFF592RRG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF680YOT bigWig bigWig read-depth normalized signal ce11 ENCSR569VQG Control ChIP-seq /worm-donors/ENCDO003JWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181197/'], '@type': ['Target', 'Item'], 'name': 'vab-15-celegans', 'label': 'vab-15', '@id': '/targets/vab-15-celegans/', 'title': 'vab-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '73ab1481-d97d-457e-8fbc-14f079d7b340', 'status': 'released'} ce11 X 9849110 9849110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF091FIB/ 9973169 Kevin White, UChicago 6a414afcf6cb5c0c9f59e4639925097e https://www.encodeproject.org/files/ENCFF680YOT/@@download/ENCFF680YOT.bigWig released s3://encode-public/2017/10/09/f113f90f-d63e-445c-b2c2-a1099a3cceed/ENCFF680YOT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF901XVW fastq fastq reads ENCSR126UEY Control ChIP-seq /human-donors/ENCDO588YPS/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2273455211 Bradley Bernstein, Broad 6793a9c7b1af4210b5bf10d75989e127 SRA:SRR13804245 https://www.encodeproject.org/files/ENCFF901XVW/@@download/ENCFF901XVW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/6d41bf50-bca3-4892-aef4-10320a4ba4bb/ENCFF901XVW.fastq.gz ENCFF284KSR fastq fastq reads ENCSR126UEY Control ChIP-seq /human-donors/ENCDO588YPS/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2293699281 Bradley Bernstein, Broad 6d7e1d7ee4115a2eca5ec1a51734dda2 SRA:SRR13804246 https://www.encodeproject.org/files/ENCFF284KSR/@@download/ENCFF284KSR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/33e40c55-d0b3-4f82-a360-81c75ab6b1bc/ENCFF284KSR.fastq.gz ENCFF426SLZ bam bam unfiltered alignments GRCh38 ENCSR126UEY Control ChIP-seq /human-donors/ENCDO588YPS/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF284KSR/, /files/ENCFF901XVW/, /files/ENCFF110MCL/ 4386834950 ENCODE Processing Pipeline 3a7017ab8b48245461f3ff693373900e https://www.encodeproject.org/files/ENCFF426SLZ/@@download/ENCFF426SLZ.bam released s3://encode-public/2020/07/19/ea928c20-8881-4b00-bf6c-c3d5bab9788c/ENCFF426SLZ.bam ENCODE4 v1.5.0 GRCh38 released ENCFF444WVG bam bam alignments GRCh38 ENCSR126UEY Control ChIP-seq /human-donors/ENCDO588YPS/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF284KSR/, /files/ENCFF901XVW/, /files/ENCFF110MCL/ 3499631511 ENCODE Processing Pipeline 61c534b298e68ad5231cbb503e4e255a https://www.encodeproject.org/files/ENCFF444WVG/@@download/ENCFF444WVG.bam released s3://encode-public/2020/07/19/d6e9cc97-2ceb-4ce5-a773-b6434ac46999/ENCFF444WVG.bam ENCODE4 v1.5.0 GRCh38 released ENCFF651BBZ fastq fastq reads ENCSR966IGL Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2449072169 Bradley Bernstein, Broad 8d1fbd39aea7dfee9e376e549324ab0a SRA:SRR13804676 https://www.encodeproject.org/files/ENCFF651BBZ/@@download/ENCFF651BBZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/43489705-a2b5-4b33-8481-34244cb8bae9/ENCFF651BBZ.fastq.gz ENCFF206KUN fastq fastq reads ENCSR966IGL Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2474405812 Bradley Bernstein, Broad 5c17fd2bd416223dc57c9495853fd61a SRA:SRR13804677 https://www.encodeproject.org/files/ENCFF206KUN/@@download/ENCFF206KUN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/5cbd993f-80f0-4c70-a78f-737bcb6061af/ENCFF206KUN.fastq.gz ENCFF179WBY bam bam unfiltered alignments GRCh38 ENCSR966IGL Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF651BBZ/, /files/ENCFF110MCL/, /files/ENCFF206KUN/ 4709405436 ENCODE Processing Pipeline 0d16929510577351f1bdda983ea11254 https://www.encodeproject.org/files/ENCFF179WBY/@@download/ENCFF179WBY.bam released s3://encode-public/2020/07/19/e9d7d549-c5c5-4891-87e7-028b5eee3cc4/ENCFF179WBY.bam ENCODE4 v1.5.0 GRCh38 released ENCFF343UPV bam bam alignments GRCh38 ENCSR966IGL Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF651BBZ/, /files/ENCFF110MCL/, /files/ENCFF206KUN/ 3822065695 ENCODE Processing Pipeline 379ff46022a33ed440228006948fbed3 https://www.encodeproject.org/files/ENCFF343UPV/@@download/ENCFF343UPV.bam released s3://encode-public/2020/07/19/f3db47c6-08f0-4b96-9c49-25d6952bb4a4/ENCFF343UPV.bam ENCODE4 v1.5.0 GRCh38 released ENCFF073JQN fastq fastq reads ENCSR515BKY Control ChIP-seq /worm-donors/ENCDO226TGY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175832/'], '@type': ['Target', 'Item'], 'name': 'dpff-1-celegans', 'label': 'dpff-1', '@id': '/targets/dpff-1-celegans/', 'title': 'dpff-1 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '993debd9-2450-438e-b878-2bcaa2619988', 'status': 'released'} ce11 III 5883025 5915803 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 616707816 Kevin White, UChicago 764e13c76c547a92baa4c2f7b5269da7 https://www.encodeproject.org/files/ENCFF073JQN/@@download/ENCFF073JQN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/d9f70436-e23f-4366-a5e4-7baa092378ec/ENCFF073JQN.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF571PJT bam bam alignments ce10 ENCSR515BKY Control ChIP-seq /worm-donors/ENCDO226TGY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175832/'], '@type': ['Target', 'Item'], 'name': 'dpff-1-celegans', 'label': 'dpff-1', '@id': '/targets/dpff-1-celegans/', 'title': 'dpff-1 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '993debd9-2450-438e-b878-2bcaa2619988', 'status': 'released'} ce11 III 5883025 5915803 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF073JQN/ 809492691 Kevin White, UChicago 12a88b80d430aefa3bd21d6c452dcb85 https://www.encodeproject.org/files/ENCFF571PJT/@@download/ENCFF571PJT.bam released s3://encode-public/2017/10/06/9919e841-3254-4b78-8d6e-1d6c9d25bc1e/ENCFF571PJT.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF105HVN bam bam alignments ce11 ENCSR515BKY Control ChIP-seq /worm-donors/ENCDO226TGY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175832/'], '@type': ['Target', 'Item'], 'name': 'dpff-1-celegans', 'label': 'dpff-1', '@id': '/targets/dpff-1-celegans/', 'title': 'dpff-1 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '993debd9-2450-438e-b878-2bcaa2619988', 'status': 'released'} ce11 III 5883025 5915803 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF073JQN/ 810128982 Kevin White, UChicago 52b0390aa64abfb89abb2b5a5b55d312 https://www.encodeproject.org/files/ENCFF105HVN/@@download/ENCFF105HVN.bam released s3://encode-public/2017/10/07/dc223fd6-4eb0-449b-809f-5d96a60c5d13/ENCFF105HVN.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF050AQU bigWig bigWig read-depth normalized signal ce10 ENCSR515BKY Control ChIP-seq /worm-donors/ENCDO226TGY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175832/'], '@type': ['Target', 'Item'], 'name': 'dpff-1-celegans', 'label': 'dpff-1', '@id': '/targets/dpff-1-celegans/', 'title': 'dpff-1 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '993debd9-2450-438e-b878-2bcaa2619988', 'status': 'released'} ce11 III 5883025 5915803 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF571PJT/ 9932820 Kevin White, UChicago e6af96a8c3ec3e111c78644cab6f50f8 https://www.encodeproject.org/files/ENCFF050AQU/@@download/ENCFF050AQU.bigWig released s3://encode-public/2017/10/09/9c5c76c5-e4ea-421d-82cd-670af86ea58a/ENCFF050AQU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF815AHC bigWig bigWig signal of unique reads ce10 ENCSR515BKY Control ChIP-seq /worm-donors/ENCDO226TGY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175832/'], '@type': ['Target', 'Item'], 'name': 'dpff-1-celegans', 'label': 'dpff-1', '@id': '/targets/dpff-1-celegans/', 'title': 'dpff-1 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '993debd9-2450-438e-b878-2bcaa2619988', 'status': 'released'} ce11 III 5883025 5915803 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF571PJT/ 9931631 Kevin White, UChicago a44f596fd1ce32e141ef826554e5f46b https://www.encodeproject.org/files/ENCFF815AHC/@@download/ENCFF815AHC.bigWig released s3://encode-public/2017/10/09/9d0b9f64-fe0d-4cbe-b366-1387334ca968/ENCFF815AHC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF706YRV bigWig bigWig signal of unique reads ce11 ENCSR515BKY Control ChIP-seq /worm-donors/ENCDO226TGY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175832/'], '@type': ['Target', 'Item'], 'name': 'dpff-1-celegans', 'label': 'dpff-1', '@id': '/targets/dpff-1-celegans/', 'title': 'dpff-1 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '993debd9-2450-438e-b878-2bcaa2619988', 'status': 'released'} ce11 III 5883025 5915803 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF105HVN/ 9928059 Kevin White, UChicago 045440848d49c985578611f80c6c47e5 https://www.encodeproject.org/files/ENCFF706YRV/@@download/ENCFF706YRV.bigWig released s3://encode-public/2017/10/09/c0561a12-4fc3-40ae-9cb6-3eec157479da/ENCFF706YRV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF893RVS bigWig bigWig read-depth normalized signal ce11 ENCSR515BKY Control ChIP-seq /worm-donors/ENCDO226TGY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175832/'], '@type': ['Target', 'Item'], 'name': 'dpff-1-celegans', 'label': 'dpff-1', '@id': '/targets/dpff-1-celegans/', 'title': 'dpff-1 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '993debd9-2450-438e-b878-2bcaa2619988', 'status': 'released'} ce11 III 5883025 5915803 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF105HVN/ 9926688 Kevin White, UChicago 2178d3e706e43ac8e2eb9463ad908795 https://www.encodeproject.org/files/ENCFF893RVS/@@download/ENCFF893RVS.bigWig released s3://encode-public/2017/10/09/d9285aad-d6d6-48e2-9576-a07e233e5506/ENCFF893RVS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF719YMU fastq fastq reads ENCSR572CBY Control ChIP-seq /fly-donors/ENCDO879EZV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33606/'], '@type': ['Target', 'Item'], 'name': 'CG3407-dmelanogaster', 'label': 'CG3407', '@id': '/targets/CG3407-dmelanogaster/', 'title': 'CG3407 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9ab85fd-906e-4273-8c3f-4c7db920b8a1', 'status': 'released'} dm3 2L 3807063 3829990 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 969331112 Kevin White, UChicago ebcf7d8fbe4950e8ce3245d2544dd1b6 https://www.encodeproject.org/files/ENCFF719YMU/@@download/ENCFF719YMU.fastq.gz Illumina HiSeq 4000 /files/ENCFF832DGO/ released s3://encode-public/2018/02/01/cc12b7a9-b4c4-4952-a687-90a1cf900414/ENCFF719YMU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF527KYQ bam bam alignments dm6 ENCSR572CBY Control ChIP-seq /fly-donors/ENCDO879EZV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33606/'], '@type': ['Target', 'Item'], 'name': 'CG3407-dmelanogaster', 'label': 'CG3407', '@id': '/targets/CG3407-dmelanogaster/', 'title': 'CG3407 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9ab85fd-906e-4273-8c3f-4c7db920b8a1', 'status': 'released'} dm3 2L 3807063 3829990 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF719YMU/, /files/ENCFF479RCH/ 1302884660 Kevin White, UChicago 2db0670bcac14a66e419fc67d7b79633 https://www.encodeproject.org/files/ENCFF527KYQ/@@download/ENCFF527KYQ.bam released s3://encode-public/2018/02/02/071159a0-ceed-4b31-b4df-c692f6cfa339/ENCFF527KYQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF058JCJ bigWig bigWig signal of unique reads dm6 ENCSR572CBY Control ChIP-seq /fly-donors/ENCDO879EZV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33606/'], '@type': ['Target', 'Item'], 'name': 'CG3407-dmelanogaster', 'label': 'CG3407', '@id': '/targets/CG3407-dmelanogaster/', 'title': 'CG3407 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9ab85fd-906e-4273-8c3f-4c7db920b8a1', 'status': 'released'} dm3 2L 3807063 3829990 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF527KYQ/ 17691373 Kevin White, UChicago ace55ea74bc15526fbde402f2c12b199 https://www.encodeproject.org/files/ENCFF058JCJ/@@download/ENCFF058JCJ.bigWig released s3://encode-public/2018/02/02/7afab332-884e-403b-8261-ed746d492224/ENCFF058JCJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF152FKH bigWig bigWig read-depth normalized signal dm6 ENCSR572CBY Control ChIP-seq /fly-donors/ENCDO879EZV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33606/'], '@type': ['Target', 'Item'], 'name': 'CG3407-dmelanogaster', 'label': 'CG3407', '@id': '/targets/CG3407-dmelanogaster/', 'title': 'CG3407 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9ab85fd-906e-4273-8c3f-4c7db920b8a1', 'status': 'released'} dm3 2L 3807063 3829990 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF527KYQ/ 17714603 Kevin White, UChicago 05168ffa1ce6eaaed79c812eafdd6b4f https://www.encodeproject.org/files/ENCFF152FKH/@@download/ENCFF152FKH.bigWig released s3://encode-public/2018/02/02/4f9d2d03-3efd-4206-8faa-8697df287f16/ENCFF152FKH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF289ZTY fastq fastq reads ENCSR175HRD Control ChIP-seq /human-donors/ENCDO022IAQ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF283EVL/ 4016084945 Michael Snyder, Stanford 5fc03a64117a072edb94d4346471eb8a https://www.encodeproject.org/files/ENCFF289ZTY/@@download/ENCFF289ZTY.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/29/24690e8f-36c2-4d8b-a66e-8364ac79b8c1/ENCFF289ZTY.fastq.gz mild to moderate bottlenecking ENCFF283EVL fastq fastq reads ENCSR175HRD Control ChIP-seq /human-donors/ENCDO022IAQ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF289ZTY/ 4167017997 Michael Snyder, Stanford 13b2355e9923276b45cc845d96e728ba https://www.encodeproject.org/files/ENCFF283EVL/@@download/ENCFF283EVL.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/29/73c89862-ac82-491b-8299-d9b0554fd990/ENCFF283EVL.fastq.gz mild to moderate bottlenecking ENCFF456JCP bam bam unfiltered alignments GRCh38 ENCSR175HRD Control ChIP-seq /human-donors/ENCDO022IAQ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF289ZTY/, /files/ENCFF110MCL/, /files/ENCFF283EVL/ 6937038382 ENCODE Processing Pipeline 795ee1bb85e31192349cd43d655a052f https://www.encodeproject.org/files/ENCFF456JCP/@@download/ENCFF456JCP.bam released s3://encode-public/2020/10/15/0fca9963-cfd8-4ed3-9adc-e9edefc49433/ENCFF456JCP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF067SGW bam bam alignments GRCh38 ENCSR175HRD Control ChIP-seq /human-donors/ENCDO022IAQ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF289ZTY/, /files/ENCFF110MCL/, /files/ENCFF283EVL/ 5325766430 ENCODE Processing Pipeline 55ced6c964cc6666551a2f6d0e113c99 https://www.encodeproject.org/files/ENCFF067SGW/@@download/ENCFF067SGW.bam released s3://encode-public/2020/10/15/19612c72-7f05-424e-ada8-c3b50ac0a4f2/ENCFF067SGW.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF708MGZ fastq fastq reads ENCSR127CDI Control ChIP-seq /worm-donors/ENCDO221PGX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172844/'], '@type': ['Target', 'Item'], 'name': 'lsl-1-celegans', 'label': 'lsl-1', '@id': '/targets/lsl-1-celegans/', 'title': 'lsl-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '910377d4-2b24-4cce-a13a-534fc6cdb306', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 608671836 Kevin White, UChicago 4b75b760f3dbf645f1e0b5295d4f7c46 https://www.encodeproject.org/files/ENCFF708MGZ/@@download/ENCFF708MGZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/975afad1-fb94-4ac7-ba1b-9296b1133ae4/ENCFF708MGZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF470FLH bam bam alignments ce11 ENCSR127CDI Control ChIP-seq /worm-donors/ENCDO221PGX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172844/'], '@type': ['Target', 'Item'], 'name': 'lsl-1-celegans', 'label': 'lsl-1', '@id': '/targets/lsl-1-celegans/', 'title': 'lsl-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '910377d4-2b24-4cce-a13a-534fc6cdb306', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF708MGZ/, /files/ENCFF586MOL/ 789805555 Kevin White, UChicago 7c6973a0249b09c3d4ee279db2df9db2 https://www.encodeproject.org/files/ENCFF470FLH/@@download/ENCFF470FLH.bam released s3://encode-public/2018/02/28/d46521d3-d1e1-4842-86a3-6cb5e324ee5f/ENCFF470FLH.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF926IFG bigWig bigWig signal of unique reads ce11 ENCSR127CDI Control ChIP-seq /worm-donors/ENCDO221PGX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172844/'], '@type': ['Target', 'Item'], 'name': 'lsl-1-celegans', 'label': 'lsl-1', '@id': '/targets/lsl-1-celegans/', 'title': 'lsl-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '910377d4-2b24-4cce-a13a-534fc6cdb306', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF470FLH/ 9923439 Kevin White, UChicago 2aaded9b4d4cb31a59b0045e1f141025 https://www.encodeproject.org/files/ENCFF926IFG/@@download/ENCFF926IFG.bigWig released s3://encode-public/2018/03/01/98df1bf0-069c-4439-917b-4135b35f977e/ENCFF926IFG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF035OFO bigWig bigWig read-depth normalized signal ce11 ENCSR127CDI Control ChIP-seq /worm-donors/ENCDO221PGX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172844/'], '@type': ['Target', 'Item'], 'name': 'lsl-1-celegans', 'label': 'lsl-1', '@id': '/targets/lsl-1-celegans/', 'title': 'lsl-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '910377d4-2b24-4cce-a13a-534fc6cdb306', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF470FLH/ 9924165 Kevin White, UChicago 7b6f90478181c8e09cf58a0f3d5fbe51 https://www.encodeproject.org/files/ENCFF035OFO/@@download/ENCFF035OFO.bigWig released s3://encode-public/2018/03/01/ef69ac63-e073-4b0d-a126-0f756442d992/ENCFF035OFO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF927XSJ fastq fastq reads ENCSR286EOA Control ChIP-seq /fly-donors/ENCDO111PBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39441/'], '@type': ['Target', 'Item'], 'name': 'mirr-dmelanogaster', 'label': 'mirr', '@id': '/targets/mirr-dmelanogaster/', 'title': 'mirr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ce38498f-287d-471a-853a-e921945cc880', 'status': 'released'} dm3 3L 12641457 12726064 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 809336489 Kevin White, UChicago 2e1aa27ff4660bc7234ccd0922a391ca https://www.encodeproject.org/files/ENCFF927XSJ/@@download/ENCFF927XSJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF324KNZ/ released s3://encode-public/2018/02/01/b49cd56e-4623-405d-94f0-ec396698b865/ENCFF927XSJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF700KUK bam bam alignments dm6 ENCSR286EOA Control ChIP-seq /fly-donors/ENCDO111PBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39441/'], '@type': ['Target', 'Item'], 'name': 'mirr-dmelanogaster', 'label': 'mirr', '@id': '/targets/mirr-dmelanogaster/', 'title': 'mirr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ce38498f-287d-471a-853a-e921945cc880', 'status': 'released'} dm3 3L 12641457 12726064 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF927XSJ/, /files/ENCFF479RCH/ 1072668904 Kevin White, UChicago 64b508019ea70da68ccadd0553730a66 https://www.encodeproject.org/files/ENCFF700KUK/@@download/ENCFF700KUK.bam released s3://encode-public/2018/02/02/c53c9f9f-eebc-4911-824c-3ec591a09120/ENCFF700KUK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF930LLS bigWig bigWig read-depth normalized signal dm6 ENCSR286EOA Control ChIP-seq /fly-donors/ENCDO111PBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39441/'], '@type': ['Target', 'Item'], 'name': 'mirr-dmelanogaster', 'label': 'mirr', '@id': '/targets/mirr-dmelanogaster/', 'title': 'mirr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ce38498f-287d-471a-853a-e921945cc880', 'status': 'released'} dm3 3L 12641457 12726064 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF700KUK/ 17599491 Kevin White, UChicago 466a0a465e6724f85a02be13b066e169 https://www.encodeproject.org/files/ENCFF930LLS/@@download/ENCFF930LLS.bigWig released s3://encode-public/2018/02/02/753016e8-8563-4bed-9087-8d3ceffb4bd6/ENCFF930LLS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF064FQU bigWig bigWig signal of unique reads dm6 ENCSR286EOA Control ChIP-seq /fly-donors/ENCDO111PBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39441/'], '@type': ['Target', 'Item'], 'name': 'mirr-dmelanogaster', 'label': 'mirr', '@id': '/targets/mirr-dmelanogaster/', 'title': 'mirr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ce38498f-287d-471a-853a-e921945cc880', 'status': 'released'} dm3 3L 12641457 12726064 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF700KUK/ 17574873 Kevin White, UChicago e3082fa0c4cd1399a6c6510a5c3ff8a4 https://www.encodeproject.org/files/ENCFF064FQU/@@download/ENCFF064FQU.bigWig released s3://encode-public/2018/02/02/3cfc6a5f-bd6d-490b-9cca-a91492b377eb/ENCFF064FQU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF337JNL fastq fastq reads ENCSR268BDW Control ChIP-seq /human-donors/ENCDO197NLG/ EFO:0002330 SJSA1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF256QZO/ 7020324581 Michael Snyder, Stanford 4a886c34375502d545bb65bd5d1acfbd SRA:SRR13804537 https://www.encodeproject.org/files/ENCFF337JNL/@@download/ENCFF337JNL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/7b2f2665-06b9-48a3-91b0-62b5dca88cee/ENCFF337JNL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF256QZO fastq fastq reads ENCSR268BDW Control ChIP-seq /human-donors/ENCDO197NLG/ EFO:0002330 SJSA1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF337JNL/ 9118174008 Michael Snyder, Stanford 4facbad7a6baf4052463d9ae304ca32e SRA:SRR13804537 https://www.encodeproject.org/files/ENCFF256QZO/@@download/ENCFF256QZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/d4d5a473-b2e2-4958-8dbf-c210a6ef0861/ENCFF256QZO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF887SMM bam bam unfiltered alignments GRCh38 ENCSR268BDW Control ChIP-seq /human-donors/ENCDO197NLG/ EFO:0002330 SJSA1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF337JNL/, /files/ENCFF256QZO/ 14951215994 ENCODE Processing Pipeline 13e2b6ddc8d4942e678744a0f18c9502 https://www.encodeproject.org/files/ENCFF887SMM/@@download/ENCFF887SMM.bam released s3://encode-public/2020/08/20/77693961-c406-447b-8d35-ba710ac73a44/ENCFF887SMM.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF453QCA bam bam alignments GRCh38 ENCSR268BDW Control ChIP-seq /human-donors/ENCDO197NLG/ EFO:0002330 SJSA1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF337JNL/, /files/ENCFF256QZO/ 9860823525 ENCODE Processing Pipeline 532c620aa250e6fcd6d8ec88d9f8b146 https://www.encodeproject.org/files/ENCFF453QCA/@@download/ENCFF453QCA.bam released s3://encode-public/2020/08/20/b6971625-6a49-4f28-af09-a1075f5a1e9e/ENCFF453QCA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF998LES fastq fastq reads ENCSR553MTY Control ChIP-seq /worm-donors/ENCDO152RWU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181457/'], '@type': ['Target', 'Item'], 'name': 'mxl-3-celegans', 'label': 'mxl-3', '@id': '/targets/mxl-3-celegans/', 'title': 'mxl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '25b39e82-7faa-4fbe-876c-fe571ae4e78a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 514967192 Kevin White, UChicago 79a16588a091ed0c304ad685e6be7e24 https://www.encodeproject.org/files/ENCFF998LES/@@download/ENCFF998LES.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/916f5cc2-7c3b-4564-9e9d-57e10ff75b3c/ENCFF998LES.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF139EOI bigWig bigWig signal of unique reads ce11 ENCSR553MTY Control ChIP-seq /worm-donors/ENCDO152RWU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181457/'], '@type': ['Target', 'Item'], 'name': 'mxl-3-celegans', 'label': 'mxl-3', '@id': '/targets/mxl-3-celegans/', 'title': 'mxl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '25b39e82-7faa-4fbe-876c-fe571ae4e78a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF329CXM/ 9923701 Kevin White, UChicago 4ed7782a90c8c82919a789a6818f329e https://www.encodeproject.org/files/ENCFF139EOI/@@download/ENCFF139EOI.bigWig released s3://encode-public/2018/05/31/9cf35b82-b8a8-4489-9236-ff429ffc16c6/ENCFF139EOI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF329CXM bam bam alignments ce11 ENCSR553MTY Control ChIP-seq /worm-donors/ENCDO152RWU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181457/'], '@type': ['Target', 'Item'], 'name': 'mxl-3-celegans', 'label': 'mxl-3', '@id': '/targets/mxl-3-celegans/', 'title': 'mxl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '25b39e82-7faa-4fbe-876c-fe571ae4e78a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF998LES/, /files/ENCFF586MOL/ 659130433 Kevin White, UChicago 3e4360939594cd44354bc753e806e4f5 https://www.encodeproject.org/files/ENCFF329CXM/@@download/ENCFF329CXM.bam released s3://encode-public/2018/05/31/11d5c0e3-4fc3-43c3-a708-821aec58df8a/ENCFF329CXM.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF490DPG bigWig bigWig read-depth normalized signal ce11 ENCSR553MTY Control ChIP-seq /worm-donors/ENCDO152RWU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181457/'], '@type': ['Target', 'Item'], 'name': 'mxl-3-celegans', 'label': 'mxl-3', '@id': '/targets/mxl-3-celegans/', 'title': 'mxl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '25b39e82-7faa-4fbe-876c-fe571ae4e78a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF329CXM/ 9943698 Kevin White, UChicago ae6d1b63f00fc0023f62d9aa15ac04da https://www.encodeproject.org/files/ENCFF490DPG/@@download/ENCFF490DPG.bigWig released s3://encode-public/2018/05/31/60f21023-8a11-431f-972d-f589ae86f13b/ENCFF490DPG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF321JZQ fastq fastq reads ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 833684400 Bradley Bernstein, Broad 13ea1cff78beb9cc9f3a9d9c9c867d36 SRA:SRR10049510 https://www.encodeproject.org/files/ENCFF321JZQ/@@download/ENCFF321JZQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/406f3bea-66c7-4985-99c3-eda2ed9c43a2/ENCFF321JZQ.fastq.gz ENCFF406UXV fastq fastq reads ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 841171080 Bradley Bernstein, Broad 5645ef52646ce07b1e5f2054bfddc14a SRA:SRR10049511 https://www.encodeproject.org/files/ENCFF406UXV/@@download/ENCFF406UXV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/219bf0cc-f6f2-4e5f-a144-e3e4091c5bf9/ENCFF406UXV.fastq.gz ENCFF980YLI fastq fastq reads ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 1207767832 Bradley Bernstein, Broad d5fc0cbdc9d6ff589b2965c8f90f71af SRA:SRR10049508 https://www.encodeproject.org/files/ENCFF980YLI/@@download/ENCFF980YLI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/b7255031-5f7e-4ea7-86ec-706bd647e0d1/ENCFF980YLI.fastq.gz ENCFF620HNN fastq fastq reads ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 1181822852 Bradley Bernstein, Broad d9b019a55d5cd0bc2d523c7b0891446c SRA:SRR10049509 https://www.encodeproject.org/files/ENCFF620HNN/@@download/ENCFF620HNN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/5e592ad1-210c-4ae0-add3-0ef6298e501f/ENCFF620HNN.fastq.gz ENCFF391LNU bam bam unfiltered alignments GRCh38 ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF980YLI/, /files/ENCFF406UXV/, /files/ENCFF620HNN/, /files/ENCFF321JZQ/, /files/ENCFF643CGH/ 3831005939 ENCODE Processing Pipeline 0f1adfedc9d21d241caec430bd4a1b61 https://www.encodeproject.org/files/ENCFF391LNU/@@download/ENCFF391LNU.bam released s3://encode-public/2018/06/13/20076001-814b-4647-bf28-02cab040262c/ENCFF391LNU.bam ENCODE3 GRCh38 archived ENCFF386TAB bam bam alignments GRCh38 ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF980YLI/, /files/ENCFF406UXV/, /files/ENCFF620HNN/, /files/ENCFF321JZQ/, /files/ENCFF643CGH/ 3204030698 ENCODE Processing Pipeline 1e9dc9d132a477d797a7c6834eaabee5 https://www.encodeproject.org/files/ENCFF386TAB/@@download/ENCFF386TAB.bam released s3://encode-public/2018/06/13/9a3c41b4-1c00-4a27-a9b5-907e49e1c9fd/ENCFF386TAB.bam ENCODE3 GRCh38 archived ENCFF070ARA bam bam unfiltered alignments hg19 ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF980YLI/, /files/ENCFF406UXV/, /files/ENCFF620HNN/, /files/ENCFF321JZQ/, /files/ENCFF807MUK/ 3820335871 ENCODE Processing Pipeline 536a7f580a4d46ed730b4ff78c56c9dc https://www.encodeproject.org/files/ENCFF070ARA/@@download/ENCFF070ARA.bam released s3://encode-public/2018/06/13/224749d3-0895-42d8-be09-4e02cafae42f/ENCFF070ARA.bam ENCODE3 hg19 archived ENCFF999MGG bam bam alignments hg19 ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF980YLI/, /files/ENCFF406UXV/, /files/ENCFF620HNN/, /files/ENCFF321JZQ/, /files/ENCFF807MUK/ 3200184540 ENCODE Processing Pipeline 0fa896c2571efaf16f1437d543c820b7 https://www.encodeproject.org/files/ENCFF999MGG/@@download/ENCFF999MGG.bam released s3://encode-public/2018/06/13/f4965028-be85-4bc7-8f30-907088da2a2b/ENCFF999MGG.bam ENCODE3 hg19 archived ENCFF531YFV bam bam unfiltered alignments GRCh38 ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF406UXV/, /files/ENCFF110MCL/, /files/ENCFF980YLI/, /files/ENCFF321JZQ/, /files/ENCFF620HNN/ 3871209050 ENCODE Processing Pipeline 58ce50d340d23f0835f55703e238a804 https://www.encodeproject.org/files/ENCFF531YFV/@@download/ENCFF531YFV.bam released s3://encode-public/2020/09/20/3e5d2de5-c540-4d5a-bb69-eaeb11f85bd7/ENCFF531YFV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF536MLZ bam bam alignments GRCh38 ENCSR178FVP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF406UXV/, /files/ENCFF110MCL/, /files/ENCFF980YLI/, /files/ENCFF321JZQ/, /files/ENCFF620HNN/ 3270661984 ENCODE Processing Pipeline 6f8b3bbe186b34ad7df0e10496c8968f https://www.encodeproject.org/files/ENCFF536MLZ/@@download/ENCFF536MLZ.bam released s3://encode-public/2020/09/20/7953e033-e426-4c3c-ba16-b87179052ae5/ENCFF536MLZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF332DMC fastq fastq reads ENCSR306EEX Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 761008408 Kevin White, UChicago bca119807c632dff88aafbd93074ccb8 https://www.encodeproject.org/files/ENCFF332DMC/@@download/ENCFF332DMC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/29/17c0de0f-d653-4508-b36f-f05c54acc776/ENCFF332DMC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF878SQK bam bam alignments dm6 ENCSR306EEX Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF332DMC/, /files/ENCFF479RCH/ 1006388658 Kevin White, UChicago 37d003f7ac4eb83dd5eb44dc223f50b6 https://www.encodeproject.org/files/ENCFF878SQK/@@download/ENCFF878SQK.bam released s3://encode-public/2018/05/29/e6431124-b9ab-41b0-af5b-bc0179064739/ENCFF878SQK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF753ILV bigWig bigWig read-depth normalized signal dm6 ENCSR306EEX Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF878SQK/ 17535905 Kevin White, UChicago d25d50bcb233fb939297cee0f00ea50e https://www.encodeproject.org/files/ENCFF753ILV/@@download/ENCFF753ILV.bigWig released s3://encode-public/2018/05/30/7a9ef237-9c04-49b5-9ac4-f1e68bcc757a/ENCFF753ILV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF317UCQ bigWig bigWig signal of unique reads dm6 ENCSR306EEX Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF878SQK/ 17525376 Kevin White, UChicago 8e4ad06ffc9a01612538e0b9aad655e0 https://www.encodeproject.org/files/ENCFF317UCQ/@@download/ENCFF317UCQ.bigWig released s3://encode-public/2018/05/30/125bcda9-92f0-4b35-9eee-c4b14fb42200/ENCFF317UCQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF051KIX fastq fastq reads ENCSR470OED Control ChIP-seq /fly-donors/ENCDO880SJB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35157/'], '@type': ['Target', 'Item'], 'name': 'CG10431-dmelanogaster', 'label': 'CG10431', '@id': '/targets/CG10431-dmelanogaster/', 'title': 'CG10431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad586784-475f-4be3-b795-b3daac8b70c5', 'status': 'released'} dm3 2L 18973110 18993171 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 985938226 Kevin White, UChicago 1218278392d550dadc5e012ea89f2770 https://www.encodeproject.org/files/ENCFF051KIX/@@download/ENCFF051KIX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/29/a98fc9c0-986d-4787-a97f-a5698ee0950e/ENCFF051KIX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF894WGD bam bam alignments dm6 ENCSR470OED Control ChIP-seq /fly-donors/ENCDO880SJB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35157/'], '@type': ['Target', 'Item'], 'name': 'CG10431-dmelanogaster', 'label': 'CG10431', '@id': '/targets/CG10431-dmelanogaster/', 'title': 'CG10431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad586784-475f-4be3-b795-b3daac8b70c5', 'status': 'released'} dm3 2L 18973110 18993171 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF051KIX/, /files/ENCFF479RCH/ 1287653801 Kevin White, UChicago 20eac726a1213f4aa933761d374f41c5 https://www.encodeproject.org/files/ENCFF894WGD/@@download/ENCFF894WGD.bam released s3://encode-public/2018/05/29/ef0ddb64-704b-42f2-a6a9-3b3af77d8285/ENCFF894WGD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF803KFQ bigWig bigWig read-depth normalized signal dm6 ENCSR470OED Control ChIP-seq /fly-donors/ENCDO880SJB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35157/'], '@type': ['Target', 'Item'], 'name': 'CG10431-dmelanogaster', 'label': 'CG10431', '@id': '/targets/CG10431-dmelanogaster/', 'title': 'CG10431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad586784-475f-4be3-b795-b3daac8b70c5', 'status': 'released'} dm3 2L 18973110 18993171 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF894WGD/ 17644266 Kevin White, UChicago 85d9697a19f332afce54bec17fbdccf4 https://www.encodeproject.org/files/ENCFF803KFQ/@@download/ENCFF803KFQ.bigWig released s3://encode-public/2018/05/30/9b7618a4-f814-477a-be4a-bb4bc376c6e9/ENCFF803KFQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF770TRL bigWig bigWig signal of unique reads dm6 ENCSR470OED Control ChIP-seq /fly-donors/ENCDO880SJB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35157/'], '@type': ['Target', 'Item'], 'name': 'CG10431-dmelanogaster', 'label': 'CG10431', '@id': '/targets/CG10431-dmelanogaster/', 'title': 'CG10431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad586784-475f-4be3-b795-b3daac8b70c5', 'status': 'released'} dm3 2L 18973110 18993171 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF894WGD/ 17608437 Kevin White, UChicago e0a70c4d7b4e4ffa7a76c4e457cd47fe https://www.encodeproject.org/files/ENCFF770TRL/@@download/ENCFF770TRL.bigWig released s3://encode-public/2018/05/30/06ebb3d4-6d8a-4fa3-a231-da05d7bf2ce9/ENCFF770TRL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF058GNS bam bam alignments ce11 ENCSR149QOO Control ChIP-seq /worm-donors/ENCDO294LGJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175581/'], '@type': ['Target', 'Item'], 'name': 'ceh-43-celegans', 'label': 'ceh-43', '@id': '/targets/ceh-43-celegans/', 'title': 'ceh-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aecfbb74-cec8-4a0b-bedb-41395d989ff4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF792EWJ/, /files/ENCFF435NYD/, /files/ENCFF586MOL/ 1512865808 Kevin White, UChicago d7a7a14b18e5b316cc689bd11bfa6b0a https://www.encodeproject.org/files/ENCFF058GNS/@@download/ENCFF058GNS.bam released s3://encode-public/2018/02/28/efff2386-964e-4315-b48b-e91b72311dbc/ENCFF058GNS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF792EWJ fastq fastq reads ENCSR149QOO Control ChIP-seq /worm-donors/ENCDO294LGJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175581/'], '@type': ['Target', 'Item'], 'name': 'ceh-43-celegans', 'label': 'ceh-43', '@id': '/targets/ceh-43-celegans/', 'title': 'ceh-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aecfbb74-cec8-4a0b-bedb-41395d989ff4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1147855284 Kevin White, UChicago a36324ee9391e4f829dbf6aa40c1cfe7 https://www.encodeproject.org/files/ENCFF792EWJ/@@download/ENCFF792EWJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/a01e96a4-4f4a-45d1-a97b-f60341928c11/ENCFF792EWJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF435NYD fastq fastq reads ENCSR149QOO Control ChIP-seq /worm-donors/ENCDO294LGJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175581/'], '@type': ['Target', 'Item'], 'name': 'ceh-43-celegans', 'label': 'ceh-43', '@id': '/targets/ceh-43-celegans/', 'title': 'ceh-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aecfbb74-cec8-4a0b-bedb-41395d989ff4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 26640 Kevin White, UChicago d7a33f1a081dff69a70b6cb6e96374c9 https://www.encodeproject.org/files/ENCFF435NYD/@@download/ENCFF435NYD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/da58a686-f0d5-49bd-9ced-b90321435ab6/ENCFF435NYD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF269ETW bigWig bigWig read-depth normalized signal ce11 ENCSR149QOO Control ChIP-seq /worm-donors/ENCDO294LGJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175581/'], '@type': ['Target', 'Item'], 'name': 'ceh-43-celegans', 'label': 'ceh-43', '@id': '/targets/ceh-43-celegans/', 'title': 'ceh-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aecfbb74-cec8-4a0b-bedb-41395d989ff4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF058GNS/ 9935301 Kevin White, UChicago 14759dd1b7b98c5c558dc73a2aa596be https://www.encodeproject.org/files/ENCFF269ETW/@@download/ENCFF269ETW.bigWig released s3://encode-public/2018/03/01/ef0e8b70-3677-4135-805d-ab151796df2a/ENCFF269ETW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF874XXM bigWig bigWig signal of unique reads ce11 ENCSR149QOO Control ChIP-seq /worm-donors/ENCDO294LGJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175581/'], '@type': ['Target', 'Item'], 'name': 'ceh-43-celegans', 'label': 'ceh-43', '@id': '/targets/ceh-43-celegans/', 'title': 'ceh-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aecfbb74-cec8-4a0b-bedb-41395d989ff4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF058GNS/ 9975792 Kevin White, UChicago 38c98cd6479a0b4f0270e37a6a25ddca https://www.encodeproject.org/files/ENCFF874XXM/@@download/ENCFF874XXM.bigWig released s3://encode-public/2018/03/01/55349989-fac1-41b6-862b-3f3ea204fddb/ENCFF874XXM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF780NTE bam bam alignments ce11 ENCSR100DIV Control ChIP-seq /worm-donors/ENCDO295OKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183310/'], '@type': ['Target', 'Item'], 'name': 'C38D4.7-celegans', 'label': 'C38D4.7', '@id': '/targets/C38D4.7-celegans/', 'title': 'C38D4.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '029892d5-13e2-445b-941d-6d805fa58253', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF769GLK/, /files/ENCFF939TOQ/, /files/ENCFF586MOL/ 1616796247 Kevin White, UChicago 28236974c579a2b204438bd95e060deb https://www.encodeproject.org/files/ENCFF780NTE/@@download/ENCFF780NTE.bam released s3://encode-public/2018/02/27/0db4f39a-9aa1-41ca-aa59-0bdbf31fea61/ENCFF780NTE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF769GLK fastq fastq reads ENCSR100DIV Control ChIP-seq /worm-donors/ENCDO295OKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183310/'], '@type': ['Target', 'Item'], 'name': 'C38D4.7-celegans', 'label': 'C38D4.7', '@id': '/targets/C38D4.7-celegans/', 'title': 'C38D4.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '029892d5-13e2-445b-941d-6d805fa58253', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 735950879 Kevin White, UChicago 35ef9ddec9adf860df8affe5dc58694c https://www.encodeproject.org/files/ENCFF769GLK/@@download/ENCFF769GLK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/f6d68184-8f1c-433f-98e0-94d67a2b894f/ENCFF769GLK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF939TOQ fastq fastq reads ENCSR100DIV Control ChIP-seq /worm-donors/ENCDO295OKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183310/'], '@type': ['Target', 'Item'], 'name': 'C38D4.7-celegans', 'label': 'C38D4.7', '@id': '/targets/C38D4.7-celegans/', 'title': 'C38D4.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '029892d5-13e2-445b-941d-6d805fa58253', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 501473344 Kevin White, UChicago aa8926825cb2c01065bff4975ddd21e0 https://www.encodeproject.org/files/ENCFF939TOQ/@@download/ENCFF939TOQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/a0f0d7c0-1314-4d67-ad44-5e1b915b6830/ENCFF939TOQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF953UPA bigWig bigWig signal of unique reads ce11 ENCSR100DIV Control ChIP-seq /worm-donors/ENCDO295OKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183310/'], '@type': ['Target', 'Item'], 'name': 'C38D4.7-celegans', 'label': 'C38D4.7', '@id': '/targets/C38D4.7-celegans/', 'title': 'C38D4.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '029892d5-13e2-445b-941d-6d805fa58253', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF780NTE/ 9964495 Kevin White, UChicago 9d9a6fc9648e6670a8e8cf132ce5dd7a https://www.encodeproject.org/files/ENCFF953UPA/@@download/ENCFF953UPA.bigWig released s3://encode-public/2018/03/01/16dc109a-67d9-4ec7-9ddb-3057b12ca5dd/ENCFF953UPA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF196EYU bigWig bigWig read-depth normalized signal ce11 ENCSR100DIV Control ChIP-seq /worm-donors/ENCDO295OKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183310/'], '@type': ['Target', 'Item'], 'name': 'C38D4.7-celegans', 'label': 'C38D4.7', '@id': '/targets/C38D4.7-celegans/', 'title': 'C38D4.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '029892d5-13e2-445b-941d-6d805fa58253', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF780NTE/ 9929130 Kevin White, UChicago 90cbef016149154bed3207807438d5b9 https://www.encodeproject.org/files/ENCFF196EYU/@@download/ENCFF196EYU.bigWig released s3://encode-public/2018/03/01/85771440-7805-4287-98b5-5b5a35cf83ce/ENCFF196EYU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF149XYA fastq fastq reads ENCSR071LAB Control ChIP-seq /worm-donors/ENCDO807NMY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172162/'], '@type': ['Target', 'Item'], 'name': 'sem-2-celegans', 'label': 'sem-2', '@id': '/targets/sem-2-celegans/', 'title': 'sem-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '391f0967-3256-4eb4-807e-6c8dff773a5a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 728905029 Kevin White, UChicago 60659aa3b1f5c81df4205b3f5562b298 https://www.encodeproject.org/files/ENCFF149XYA/@@download/ENCFF149XYA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/743b56bb-f402-4935-9bb5-e769ca7719b8/ENCFF149XYA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF453DGX fastq fastq reads ENCSR071LAB Control ChIP-seq /worm-donors/ENCDO807NMY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172162/'], '@type': ['Target', 'Item'], 'name': 'sem-2-celegans', 'label': 'sem-2', '@id': '/targets/sem-2-celegans/', 'title': 'sem-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '391f0967-3256-4eb4-807e-6c8dff773a5a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3 3_1 50 single-ended 811409664 Kevin White, UChicago cc308e0e86386425445cdbb21d64a580 https://www.encodeproject.org/files/ENCFF453DGX/@@download/ENCFF453DGX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/07e33e3a-6809-432e-ba89-ff2d2984653a/ENCFF453DGX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF360VKV bam bam alignments ce11 ENCSR071LAB Control ChIP-seq /worm-donors/ENCDO807NMY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172162/'], '@type': ['Target', 'Item'], 'name': 'sem-2-celegans', 'label': 'sem-2', '@id': '/targets/sem-2-celegans/', 'title': 'sem-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '391f0967-3256-4eb4-807e-6c8dff773a5a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3 1_1, 3_1 50 /files/ENCFF149XYA/, /files/ENCFF453DGX/, /files/ENCFF586MOL/ 2016327245 Kevin White, UChicago 06bfefae560a02c19e4e8049f9fabde9 https://www.encodeproject.org/files/ENCFF360VKV/@@download/ENCFF360VKV.bam released s3://encode-public/2018/02/28/bd92dbd1-1a29-42ff-b722-ba5e27f63909/ENCFF360VKV.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF867HIV bigWig bigWig read-depth normalized signal ce11 ENCSR071LAB Control ChIP-seq /worm-donors/ENCDO807NMY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172162/'], '@type': ['Target', 'Item'], 'name': 'sem-2-celegans', 'label': 'sem-2', '@id': '/targets/sem-2-celegans/', 'title': 'sem-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '391f0967-3256-4eb4-807e-6c8dff773a5a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3 1_1, 3_1 /files/ENCFF360VKV/ 10007340 Kevin White, UChicago 66b63530810974b2947c975b363c4123 https://www.encodeproject.org/files/ENCFF867HIV/@@download/ENCFF867HIV.bigWig released s3://encode-public/2018/03/01/8832a58e-7d86-4f9c-aace-597748f68112/ENCFF867HIV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF806HKJ bigWig bigWig signal of unique reads ce11 ENCSR071LAB Control ChIP-seq /worm-donors/ENCDO807NMY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172162/'], '@type': ['Target', 'Item'], 'name': 'sem-2-celegans', 'label': 'sem-2', '@id': '/targets/sem-2-celegans/', 'title': 'sem-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '391f0967-3256-4eb4-807e-6c8dff773a5a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3 1_1, 3_1 /files/ENCFF360VKV/ 9946490 Kevin White, UChicago d0d4ad85647e4f70ab8e9bc36e7aa99b https://www.encodeproject.org/files/ENCFF806HKJ/@@download/ENCFF806HKJ.bigWig released s3://encode-public/2018/03/01/b6fc334f-732e-4a7f-8109-a2a97729c7c2/ENCFF806HKJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF112KLZ bam bam unfiltered alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF576PQI/, /files/ENCFF762JCT/, /files/ENCFF586QCH/, /files/ENCFF188ORQ/ 2874881980 ENCODE Processing Pipeline de6a19b1af1fcfb38ec543ee3c868e68 https://www.encodeproject.org/files/ENCFF112KLZ/@@download/ENCFF112KLZ.bam released s3://encode-public/2020/09/19/f5fd74ac-0fe8-4ff2-9d2d-b5e72426cf88/ENCFF112KLZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF394KMS bam bam alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF576PQI/, /files/ENCFF762JCT/, /files/ENCFF586QCH/, /files/ENCFF188ORQ/ 2422974449 ENCODE Processing Pipeline 90f04530d26efdc237f04ecae9219734 https://www.encodeproject.org/files/ENCFF394KMS/@@download/ENCFF394KMS.bam released s3://encode-public/2020/09/19/d5c968d4-8633-4357-aea7-5af4ffaed2e3/ENCFF394KMS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF074QAU bam bam alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF861MOU/, /files/ENCFF367TJJ/ 3406090491 ENCODE Processing Pipeline 347cf35238646508daabf45c9aef7b2a https://www.encodeproject.org/files/ENCFF074QAU/@@download/ENCFF074QAU.bam released s3://encode-public/2020/09/19/d8a3575f-cf3f-4103-8fea-f245a9bde936/ENCFF074QAU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF762JCT fastq fastq reads ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 631837804 Bradley Bernstein, Broad c09d08ece90ff3ae148acf02adad1b50 SRA:SRR10049678 https://www.encodeproject.org/files/ENCFF762JCT/@@download/ENCFF762JCT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/10d66084-e118-4df5-a83d-3c41743a6312/ENCFF762JCT.fastq.gz mild to moderate bottlenecking ENCFF188ORQ fastq fastq reads ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 827892433 Bradley Bernstein, Broad 2963d6ca9154d905e50f06a34f1f318d SRA:SRR10049676 https://www.encodeproject.org/files/ENCFF188ORQ/@@download/ENCFF188ORQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/4e54d0ba-e255-419a-ba98-1901d25ea279/ENCFF188ORQ.fastq.gz mild to moderate bottlenecking ENCFF576PQI fastq fastq reads ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 834002365 Bradley Bernstein, Broad d4be730db22aaf0449476048010493d3 SRA:SRR10049677 https://www.encodeproject.org/files/ENCFF576PQI/@@download/ENCFF576PQI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/af4334c7-9ed3-4c41-9189-0b13510189c3/ENCFF576PQI.fastq.gz mild to moderate bottlenecking ENCFF367TJJ fastq fastq reads ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 2346622225 Bradley Bernstein, Broad 669ec505bffbde15352e00f88091dbfd SRA:SRR10049674 https://www.encodeproject.org/files/ENCFF367TJJ/@@download/ENCFF367TJJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/c421940c-b113-4f0e-aee2-0289bd0166f9/ENCFF367TJJ.fastq.gz mild to moderate bottlenecking ENCFF586QCH fastq fastq reads ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 633392053 Bradley Bernstein, Broad a8af2028f702d5d78d3bc9f39edba0b9 SRA:SRR10049679 https://www.encodeproject.org/files/ENCFF586QCH/@@download/ENCFF586QCH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/0524fa39-a497-426e-9f7b-14282d36191f/ENCFF586QCH.fastq.gz mild to moderate bottlenecking ENCFF861MOU fastq fastq reads ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 2388651342 Bradley Bernstein, Broad 02521a838a4c9647072f50a0c9d520ca SRA:SRR10049675 https://www.encodeproject.org/files/ENCFF861MOU/@@download/ENCFF861MOU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/e29f718e-e968-4c26-a997-e8faded3dc9f/ENCFF861MOU.fastq.gz mild to moderate bottlenecking ENCFF053PVZ bam bam unfiltered alignments hg19 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF576PQI/, /files/ENCFF188ORQ/, /files/ENCFF762JCT/, /files/ENCFF586QCH/ 2834744294 ENCODE Processing Pipeline 9b73a1ae175f59d7839e8205ab2a7101 https://www.encodeproject.org/files/ENCFF053PVZ/@@download/ENCFF053PVZ.bam released s3://encode-public/2018/06/16/b923e2d9-f55a-40da-b5f4-71d84ea8a581/ENCFF053PVZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF802YTJ bam bam alignments hg19 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF576PQI/, /files/ENCFF188ORQ/, /files/ENCFF762JCT/, /files/ENCFF586QCH/ 2374609374 ENCODE Processing Pipeline 4df0117abd97c52854bfb8c10abd9dbb https://www.encodeproject.org/files/ENCFF802YTJ/@@download/ENCFF802YTJ.bam released s3://encode-public/2018/06/16/b42f355d-177e-488c-91ca-c1d47f2587b3/ENCFF802YTJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF373EMW bam bam unfiltered alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF576PQI/, /files/ENCFF188ORQ/, /files/ENCFF762JCT/, /files/ENCFF586QCH/ 2842333963 ENCODE Processing Pipeline ab32ee10c598d2be084ca221b08caa6e https://www.encodeproject.org/files/ENCFF373EMW/@@download/ENCFF373EMW.bam released s3://encode-public/2018/06/16/c78c6996-5a24-4d05-91c4-a760de0f4a2a/ENCFF373EMW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF492OBI bam bam alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF576PQI/, /files/ENCFF188ORQ/, /files/ENCFF762JCT/, /files/ENCFF586QCH/ 2377120969 ENCODE Processing Pipeline 78eb5e1d1930d08bc654ad56ee71911a https://www.encodeproject.org/files/ENCFF492OBI/@@download/ENCFF492OBI.bam released s3://encode-public/2018/06/16/6ea198c5-3cb7-439d-a1d1-813b4965be88/ENCFF492OBI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF851BYG bam bam alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF367TJJ/, /files/ENCFF643CGH/, /files/ENCFF861MOU/ 3332388509 ENCODE Processing Pipeline 849b96441d913f9aa3ab1c172441b19e https://www.encodeproject.org/files/ENCFF851BYG/@@download/ENCFF851BYG.bam released s3://encode-public/2018/06/16/1dfe482e-1426-42e9-b684-f4256b4c2bfe/ENCFF851BYG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF270QVF bam bam unfiltered alignments hg19 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF367TJJ/, /files/ENCFF807MUK/, /files/ENCFF861MOU/ 4257958803 ENCODE Processing Pipeline abc4686611b20067737a9a0ec436add5 https://www.encodeproject.org/files/ENCFF270QVF/@@download/ENCFF270QVF.bam released s3://encode-public/2018/06/16/bbdc53a7-1afb-40cf-ac0f-8960ade6292c/ENCFF270QVF.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF390VFU bam bam unfiltered alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF367TJJ/, /files/ENCFF643CGH/, /files/ENCFF861MOU/ 4268920565 ENCODE Processing Pipeline b2eb06fce56bfe47c8596fe94c7ac911 https://www.encodeproject.org/files/ENCFF390VFU/@@download/ENCFF390VFU.bam released s3://encode-public/2018/06/16/be0fad78-cf71-458d-b1ec-b91cf0b8aa5e/ENCFF390VFU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF671ERI bam bam alignments hg19 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF367TJJ/, /files/ENCFF807MUK/, /files/ENCFF861MOU/ 3328389800 ENCODE Processing Pipeline a983599a3074f418360076b6322063b9 https://www.encodeproject.org/files/ENCFF671ERI/@@download/ENCFF671ERI.bam released s3://encode-public/2018/06/16/d2af5f8c-835d-4db3-8f0a-30b713f68b96/ENCFF671ERI.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF119SLV bam bam unfiltered alignments GRCh38 ENCSR859LXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF861MOU/, /files/ENCFF367TJJ/ 4314506655 ENCODE Processing Pipeline d261aa1d74f7b917cb4195f875ede451 https://www.encodeproject.org/files/ENCFF119SLV/@@download/ENCFF119SLV.bam released s3://encode-public/2020/09/19/6fe7b3fb-2398-46bf-a779-2b5c0e8e973b/ENCFF119SLV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF544NMC bam bam unfiltered alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF250JCY/, /files/ENCFF553HYW/, /files/ENCFF110MCL/, /files/ENCFF714JZG/, /files/ENCFF317ZIG/ 7053285265 ENCODE Processing Pipeline 204eaa90ea661291610dad879df55641 https://www.encodeproject.org/files/ENCFF544NMC/@@download/ENCFF544NMC.bam released s3://encode-public/2020/09/20/db7776ea-b322-49b9-b07d-67656712cb78/ENCFF544NMC.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF714JZG fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 1580765237 Bradley Bernstein, Broad 8e9cdb14038fa9316d9513315547514f SRA:SRR10837840 https://www.encodeproject.org/files/ENCFF714JZG/@@download/ENCFF714JZG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/4466af21-a562-4ace-8af8-8ba91d28e245/ENCFF714JZG.fastq.gz inconsistent platforms ENCFF553HYW fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 1557333739 Bradley Bernstein, Broad 38ab135cfbe7bb2a33a75d18b9834c85 SRA:SRR10837841 https://www.encodeproject.org/files/ENCFF553HYW/@@download/ENCFF553HYW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/1a344af7-3dd1-4755-9097-830bb6babeee/ENCFF553HYW.fastq.gz inconsistent platforms ENCFF317ZIG fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 2209905717 Bradley Bernstein, Broad bc8c3f8d136f8771af252d2a71e05ad2 SRA:SRR10837838 https://www.encodeproject.org/files/ENCFF317ZIG/@@download/ENCFF317ZIG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/8db23c10-7a7f-43fd-bd94-98136e42cfd6/ENCFF317ZIG.fastq.gz inconsistent platforms ENCFF250JCY fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 2218914407 Bradley Bernstein, Broad 1a3714152d449a4e4177319b1a88086e SRA:SRR10837839 https://www.encodeproject.org/files/ENCFF250JCY/@@download/ENCFF250JCY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/2b5d105c-e19e-4df8-b09c-b0d6bc8a8fb4/ENCFF250JCY.fastq.gz inconsistent platforms ENCFF925XTQ bam bam unfiltered alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF714JZG/, /files/ENCFF553HYW/, /files/ENCFF643CGH/, /files/ENCFF317ZIG/, /files/ENCFF250JCY/ 6900562786 ENCODE Processing Pipeline bb2b31f9bc3a3f8021220bd8bfd112d6 https://www.encodeproject.org/files/ENCFF925XTQ/@@download/ENCFF925XTQ.bam released s3://encode-public/2018/11/27/db33ed96-43d6-413a-9343-9e09e39558e9/ENCFF925XTQ.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF509UCY bam bam alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF714JZG/, /files/ENCFF553HYW/, /files/ENCFF643CGH/, /files/ENCFF317ZIG/, /files/ENCFF250JCY/ 5483212094 ENCODE Processing Pipeline cf65d3d9a86e31550afe4d361077b1a9 https://www.encodeproject.org/files/ENCFF509UCY/@@download/ENCFF509UCY.bam released s3://encode-public/2018/11/27/54bcb495-3c44-4650-8e3a-67a8583cf79d/ENCFF509UCY.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF448WEQ bam bam unfiltered alignments hg19 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF714JZG/, /files/ENCFF553HYW/, /files/ENCFF807MUK/, /files/ENCFF317ZIG/, /files/ENCFF250JCY/ 8003676844 ENCODE Processing Pipeline d158d0644a6fc190575cf097aeb1a6a7 https://www.encodeproject.org/files/ENCFF448WEQ/@@download/ENCFF448WEQ.bam archived s3://encode-public/2018/11/27/2669c3f5-2ed0-4506-b4d2-2d2d21b0cde0/ENCFF448WEQ.bam ENCODE3 hg19 archived inconsistent platforms ENCFF710WNN bam bam alignments hg19 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF714JZG/, /files/ENCFF553HYW/, /files/ENCFF807MUK/, /files/ENCFF317ZIG/, /files/ENCFF250JCY/ 5476003398 ENCODE Processing Pipeline 6847ceb202df077aed83e38306ff468c https://www.encodeproject.org/files/ENCFF710WNN/@@download/ENCFF710WNN.bam archived s3://encode-public/2018/11/27/84d669d4-60e2-452d-9ec2-59a9b451c70c/ENCFF710WNN.bam ENCODE3 hg19 archived inconsistent platforms ENCFF545DLE bam bam unfiltered alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF643CGH/, /files/ENCFF209PFD/, /files/ENCFF788MXA/, /files/ENCFF223MCB/, /files/ENCFF441VGU/, /files/ENCFF287VQM/, /files/ENCFF107KZB/, /files/ENCFF320XXP/, /files/ENCFF511DRG/, /files/ENCFF956OJR/, /files/ENCFF553FUG/, /files/ENCFF213LKO/, /files/ENCFF652RFT/ 3914391525 ENCODE Processing Pipeline b064fd087085a2095195c2ae6d09accb https://www.encodeproject.org/files/ENCFF545DLE/@@download/ENCFF545DLE.bam released s3://encode-public/2019/08/29/15d55300-f867-4a91-888a-f2c64146286b/ENCFF545DLE.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF721CCZ bam bam unfiltered alignments hg19 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF209PFD/, /files/ENCFF788MXA/, /files/ENCFF223MCB/, /files/ENCFF441VGU/, /files/ENCFF807MUK/, /files/ENCFF287VQM/, /files/ENCFF107KZB/, /files/ENCFF320XXP/, /files/ENCFF511DRG/, /files/ENCFF956OJR/, /files/ENCFF553FUG/, /files/ENCFF213LKO/, /files/ENCFF652RFT/ 3899204898 ENCODE Processing Pipeline eaaa2574544ee1176abbe760af51a8d8 https://www.encodeproject.org/files/ENCFF721CCZ/@@download/ENCFF721CCZ.bam released s3://encode-public/2019/08/29/0b822a98-3455-46bd-82ac-d699a60ad2d1/ENCFF721CCZ.bam ENCODE3 hg19 archived inconsistent platforms ENCFF272SJQ bam bam unfiltered alignments hg19 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF714JZG/, /files/ENCFF553HYW/, /files/ENCFF807MUK/, /files/ENCFF317ZIG/, /files/ENCFF250JCY/ 6884377017 ENCODE Processing Pipeline 86779f56198d5e3848e9721f2a78b890 https://www.encodeproject.org/files/ENCFF272SJQ/@@download/ENCFF272SJQ.bam released s3://encode-public/2019/08/29/1fe8a90c-8051-4f2f-917b-91900dcbcd02/ENCFF272SJQ.bam ENCODE3 hg19 archived inconsistent platforms ENCFF838GQE bam bam alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF643CGH/, /files/ENCFF209PFD/, /files/ENCFF788MXA/, /files/ENCFF223MCB/, /files/ENCFF441VGU/, /files/ENCFF287VQM/, /files/ENCFF107KZB/, /files/ENCFF320XXP/, /files/ENCFF511DRG/, /files/ENCFF956OJR/, /files/ENCFF553FUG/, /files/ENCFF213LKO/, /files/ENCFF652RFT/ 3243733256 ENCODE Processing Pipeline 9d062733062fd83a82746cf00b93e8e2 https://www.encodeproject.org/files/ENCFF838GQE/@@download/ENCFF838GQE.bam released s3://encode-public/2019/08/29/84f93809-e920-4a16-837d-aa9758c30ce0/ENCFF838GQE.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF165MJA bam bam alignments hg19 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF209PFD/, /files/ENCFF788MXA/, /files/ENCFF223MCB/, /files/ENCFF441VGU/, /files/ENCFF807MUK/, /files/ENCFF287VQM/, /files/ENCFF107KZB/, /files/ENCFF320XXP/, /files/ENCFF511DRG/, /files/ENCFF956OJR/, /files/ENCFF553FUG/, /files/ENCFF213LKO/, /files/ENCFF652RFT/ 3240135218 ENCODE Processing Pipeline 1e559cb4b9e3cc967d679a82ad56aca9 https://www.encodeproject.org/files/ENCFF165MJA/@@download/ENCFF165MJA.bam released s3://encode-public/2019/08/29/0c5c678b-9538-4e46-8edf-424b5bf9cb5d/ENCFF165MJA.bam ENCODE3 hg19 archived inconsistent platforms ENCFF264RGH bam bam alignments hg19 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF714JZG/, /files/ENCFF553HYW/, /files/ENCFF807MUK/, /files/ENCFF317ZIG/, /files/ENCFF250JCY/ 5476003393 ENCODE Processing Pipeline facb9ca96b95c1c43e1e8059524efeb5 https://www.encodeproject.org/files/ENCFF264RGH/@@download/ENCFF264RGH.bam released s3://encode-public/2019/08/29/13b4d090-d98a-4330-acdc-9cc17cee8450/ENCFF264RGH.bam ENCODE3 hg19 archived inconsistent platforms ENCFF788MXA fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 single-ended 469081781 Bradley Bernstein, Broad 45d96aaa36614c5ec9d100ddb8da5d47 SRA:SRR10837850 https://www.encodeproject.org/files/ENCFF788MXA/@@download/ENCFF788MXA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/a3e173e1-05e6-4488-863f-a181cb09f10d/ENCFF788MXA.fastq.gz inconsistent platforms ENCFF956OJR fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 single-ended 469192641 Bradley Bernstein, Broad 80d03e689966f57dde5c6b105b3f16ab SRA:SRR10837851 https://www.encodeproject.org/files/ENCFF956OJR/@@download/ENCFF956OJR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/66b565dd-828e-4730-9c87-6c9e475be190/ENCFF956OJR.fastq.gz inconsistent platforms ENCFF209PFD fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 single-ended 473285342 Bradley Bernstein, Broad f469905492ba3851c2f699e5bc26e7f5 SRA:SRR10837852 https://www.encodeproject.org/files/ENCFF209PFD/@@download/ENCFF209PFD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/66b695b7-88b7-439d-b081-99d8216755f1/ENCFF209PFD.fastq.gz inconsistent platforms ENCFF652RFT fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 single-ended 477236853 Bradley Bernstein, Broad a138912174286b37abf8c434351d8cfc SRA:SRR10837853 https://www.encodeproject.org/files/ENCFF652RFT/@@download/ENCFF652RFT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/f85f6df9-42d0-4079-8dff-48cecca60b50/ENCFF652RFT.fastq.gz inconsistent platforms ENCFF441VGU fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_2 76 single-ended 199280294 Bradley Bernstein, Broad d4e8ea7be5d1a93261f2c7ddce227f26 SRA:SRR10837846 https://www.encodeproject.org/files/ENCFF441VGU/@@download/ENCFF441VGU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/2926cc28-ae38-4d97-8066-afed5b070a9d/ENCFF441VGU.fastq.gz inconsistent platforms ENCFF320XXP fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_2 76 single-ended 200911881 Bradley Bernstein, Broad 6d7c1f01a74df8d58270696ff7c899f7 SRA:SRR10837847 https://www.encodeproject.org/files/ENCFF320XXP/@@download/ENCFF320XXP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/707a2ade-7b5d-471c-856b-f7b1e072f574/ENCFF320XXP.fastq.gz inconsistent platforms ENCFF213LKO fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_2 76 single-ended 207408986 Bradley Bernstein, Broad 2154aaf000a12c984cd294f597ee98e3 SRA:SRR10837848 https://www.encodeproject.org/files/ENCFF213LKO/@@download/ENCFF213LKO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/22c0796b-d77e-411b-90b3-607cb47b68ea/ENCFF213LKO.fastq.gz inconsistent platforms ENCFF511DRG fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_2 76 single-ended 201964430 Bradley Bernstein, Broad 4d038fdc5a67f1f1f2411dbd6ebe8938 SRA:SRR10837849 https://www.encodeproject.org/files/ENCFF511DRG/@@download/ENCFF511DRG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/96913010-31dd-408c-b94f-e3b5f2aaaf85/ENCFF511DRG.fastq.gz inconsistent platforms ENCFF107KZB fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_3 76 single-ended 138918089 Bradley Bernstein, Broad 6a995a9fbe96a7fea0d7f60099ecf5c4 SRA:SRR10837842 https://www.encodeproject.org/files/ENCFF107KZB/@@download/ENCFF107KZB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/ff097f36-2d9a-4c74-a7bb-2cb3f0c7a5ea/ENCFF107KZB.fastq.gz inconsistent platforms ENCFF287VQM fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_3 76 single-ended 198213504 Bradley Bernstein, Broad 99c4478361e3f1207bf718ff3bfe1a7b SRA:SRR10837843 https://www.encodeproject.org/files/ENCFF287VQM/@@download/ENCFF287VQM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/d3b89648-9309-44c3-a0ba-edeae38d3d44/ENCFF287VQM.fastq.gz inconsistent platforms ENCFF223MCB fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_3 76 single-ended 455115660 Bradley Bernstein, Broad 99deca85b73136c22a3172f3825db308 SRA:SRR10837844 https://www.encodeproject.org/files/ENCFF223MCB/@@download/ENCFF223MCB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/dcf3d9b4-6dea-4be9-bd0f-84b8874084eb/ENCFF223MCB.fastq.gz inconsistent platforms ENCFF553FUG fastq fastq reads ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_3 76 single-ended 495452874 Bradley Bernstein, Broad a7ea9ce9fd3d576423e6e304a7a13e72 SRA:SRR10837845 https://www.encodeproject.org/files/ENCFF553FUG/@@download/ENCFF553FUG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/8ff7dff5-0f4c-4268-b279-706f4b7c8470/ENCFF553FUG.fastq.gz inconsistent platforms ENCFF573MRH bam bam unfiltered alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF652RFT/, /files/ENCFF209PFD/, /files/ENCFF110MCL/, /files/ENCFF287VQM/, /files/ENCFF511DRG/, /files/ENCFF956OJR/, /files/ENCFF788MXA/, /files/ENCFF107KZB/, /files/ENCFF213LKO/, /files/ENCFF320XXP/, /files/ENCFF553FUG/, /files/ENCFF441VGU/, /files/ENCFF223MCB/ 3898963204 ENCODE Processing Pipeline 3c4048279f89ddffacfc02c783263a06 https://www.encodeproject.org/files/ENCFF573MRH/@@download/ENCFF573MRH.bam released s3://encode-public/2020/09/20/3a2a7328-7bf9-4c3c-9372-e5ed07cbf631/ENCFF573MRH.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF346JZT bam bam alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF250JCY/, /files/ENCFF553HYW/, /files/ENCFF110MCL/, /files/ENCFF714JZG/, /files/ENCFF317ZIG/ 5519241593 ENCODE Processing Pipeline 56ff366a986dc8d4b11a0f80019e7d6f https://www.encodeproject.org/files/ENCFF346JZT/@@download/ENCFF346JZT.bam released s3://encode-public/2020/09/20/6fa4a434-5fdc-4849-8dc6-f14b18a07535/ENCFF346JZT.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF234NNJ bam bam alignments GRCh38 ENCSR384KIB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF652RFT/, /files/ENCFF209PFD/, /files/ENCFF110MCL/, /files/ENCFF287VQM/, /files/ENCFF511DRG/, /files/ENCFF956OJR/, /files/ENCFF788MXA/, /files/ENCFF107KZB/, /files/ENCFF213LKO/, /files/ENCFF320XXP/, /files/ENCFF553FUG/, /files/ENCFF441VGU/, /files/ENCFF223MCB/ 3263063235 ENCODE Processing Pipeline d997839941410070fde564053d6c740d https://www.encodeproject.org/files/ENCFF234NNJ/@@download/ENCFF234NNJ.bam released s3://encode-public/2020/09/20/98b0f707-8427-4eb3-bc89-f7fc5a0e6683/ENCFF234NNJ.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF364NJX fastq fastq reads ENCSR925LDI Control ChIP-seq /worm-donors/ENCDO518ZHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185853/'], '@type': ['Target', 'Item'], 'name': 'ceh-27-celegans', 'label': 'ceh-27', '@id': '/targets/ceh-27-celegans/', 'title': 'ceh-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261029a5-c670-4f46-bb7f-c4c28dc8a8f1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 969631797 Kevin White, UChicago 7d28ea3e83143accfca37231d8fac490 https://www.encodeproject.org/files/ENCFF364NJX/@@download/ENCFF364NJX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/80815fe5-8c94-40ce-9f65-0f2f47c1631c/ENCFF364NJX.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF800SHI fastq fastq reads ENCSR925LDI Control ChIP-seq /worm-donors/ENCDO518ZHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185853/'], '@type': ['Target', 'Item'], 'name': 'ceh-27-celegans', 'label': 'ceh-27', '@id': '/targets/ceh-27-celegans/', 'title': 'ceh-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261029a5-c670-4f46-bb7f-c4c28dc8a8f1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1048160970 Kevin White, UChicago d49234f3b22976fd009c79c111828d70 https://www.encodeproject.org/files/ENCFF800SHI/@@download/ENCFF800SHI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/2a1eb44c-d838-4401-ba58-83c39679e307/ENCFF800SHI.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF068LBJ bam bam alignments ce11 ENCSR925LDI Control ChIP-seq /worm-donors/ENCDO518ZHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185853/'], '@type': ['Target', 'Item'], 'name': 'ceh-27-celegans', 'label': 'ceh-27', '@id': '/targets/ceh-27-celegans/', 'title': 'ceh-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261029a5-c670-4f46-bb7f-c4c28dc8a8f1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF800SHI/, /files/ENCFF364NJX/, /files/ENCFF586MOL/ 2624451374 Kevin White, UChicago 9ce209ff67171bc34f9780c16573fd29 https://www.encodeproject.org/files/ENCFF068LBJ/@@download/ENCFF068LBJ.bam released s3://encode-public/2018/05/31/61091af7-4430-45d1-a744-41b32864599d/ENCFF068LBJ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF567BJC bigWig bigWig read-depth normalized signal ce11 ENCSR925LDI Control ChIP-seq /worm-donors/ENCDO518ZHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185853/'], '@type': ['Target', 'Item'], 'name': 'ceh-27-celegans', 'label': 'ceh-27', '@id': '/targets/ceh-27-celegans/', 'title': 'ceh-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261029a5-c670-4f46-bb7f-c4c28dc8a8f1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF068LBJ/ 9957711 Kevin White, UChicago 0188dc792597e59baa08e115ca9ce68d https://www.encodeproject.org/files/ENCFF567BJC/@@download/ENCFF567BJC.bigWig released s3://encode-public/2018/05/31/99b03d58-8b45-4277-8998-c95ae57e11e6/ENCFF567BJC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF304ZXD bigWig bigWig signal of unique reads ce11 ENCSR925LDI Control ChIP-seq /worm-donors/ENCDO518ZHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185853/'], '@type': ['Target', 'Item'], 'name': 'ceh-27-celegans', 'label': 'ceh-27', '@id': '/targets/ceh-27-celegans/', 'title': 'ceh-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261029a5-c670-4f46-bb7f-c4c28dc8a8f1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF068LBJ/ 9930977 Kevin White, UChicago 5bab4b341859c9aec9d71b94dd323467 https://www.encodeproject.org/files/ENCFF304ZXD/@@download/ENCFF304ZXD.bigWig released s3://encode-public/2018/05/31/2d23b37b-133d-459b-9e0c-ce6c92875fba/ENCFF304ZXD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF776ONG fastq fastq reads ENCSR990RKL Control ChIP-seq /worm-donors/ENCDO518KHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171997/'], '@type': ['Target', 'Item'], 'name': 'akir-1-celegans', 'label': 'akir-1', '@id': '/targets/akir-1-celegans/', 'title': 'akir-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a13ca1de-a6fd-4017-aeb9-84fffe74180b', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 752730395 Kevin White, UChicago 64e7694ccef9b85ea1857f62eca45c57 https://www.encodeproject.org/files/ENCFF776ONG/@@download/ENCFF776ONG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/06/11/c75c8a23-ce27-4550-853d-3d66715b5a14/ENCFF776ONG.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF541ZKQ bam bam alignments ce11 ENCSR990RKL Control ChIP-seq /worm-donors/ENCDO518KHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171997/'], '@type': ['Target', 'Item'], 'name': 'akir-1-celegans', 'label': 'akir-1', '@id': '/targets/akir-1-celegans/', 'title': 'akir-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a13ca1de-a6fd-4017-aeb9-84fffe74180b', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF776ONG/, /files/ENCFF586MOL/ 979685026 Kevin White, UChicago 5b769d0df3529e0968c9a0b5e1f2b0cf https://www.encodeproject.org/files/ENCFF541ZKQ/@@download/ENCFF541ZKQ.bam released s3://encode-public/2018/06/11/3262b5d2-262f-4123-9a35-73e1929080b2/ENCFF541ZKQ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF755VFA bigWig bigWig signal of unique reads ce11 ENCSR990RKL Control ChIP-seq /worm-donors/ENCDO518KHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171997/'], '@type': ['Target', 'Item'], 'name': 'akir-1-celegans', 'label': 'akir-1', '@id': '/targets/akir-1-celegans/', 'title': 'akir-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a13ca1de-a6fd-4017-aeb9-84fffe74180b', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF541ZKQ/ 10004034 Kevin White, UChicago 6afbbb2b80ba433197a3cbf6373f7edf https://www.encodeproject.org/files/ENCFF755VFA/@@download/ENCFF755VFA.bigWig released s3://encode-public/2018/06/11/11183ec0-6e4e-4e12-a8c0-d70bd0541f74/ENCFF755VFA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF701MRX bigWig bigWig read-depth normalized signal ce11 ENCSR990RKL Control ChIP-seq /worm-donors/ENCDO518KHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171997/'], '@type': ['Target', 'Item'], 'name': 'akir-1-celegans', 'label': 'akir-1', '@id': '/targets/akir-1-celegans/', 'title': 'akir-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a13ca1de-a6fd-4017-aeb9-84fffe74180b', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF541ZKQ/ 10031486 Kevin White, UChicago 6f1a612b08765c66941a4cb42e009629 https://www.encodeproject.org/files/ENCFF701MRX/@@download/ENCFF701MRX.bigWig released s3://encode-public/2018/06/11/4b05df58-dffb-4d71-a425-570d90ca85ee/ENCFF701MRX.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF492ZCD fastq fastq reads ENCSR809DRY Control ChIP-seq /worm-donors/ENCDO157DQJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178004/'], '@type': ['Target', 'Item'], 'name': 'Y5F2A.4-celegans', 'label': 'Y5F2A.4', '@id': '/targets/Y5F2A.4-celegans/', 'title': 'Y5F2A.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'd1760f82-de89-4214-8447-ab78110d932b', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 266350103 Kevin White, UChicago 9d2068d9233e5e6ce4f7a1b98ee33cd2 https://www.encodeproject.org/files/ENCFF492ZCD/@@download/ENCFF492ZCD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/eac45fcf-8c27-4282-aefa-ace485443c57/ENCFF492ZCD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF890RDK fastq fastq reads ENCSR809DRY Control ChIP-seq /worm-donors/ENCDO157DQJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': 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whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39089/'], '@type': ['Target', 'Item'], 'name': 'MTF-1-dmelanogaster', 'label': 'MTF-1', '@id': '/targets/MTF-1-dmelanogaster/', 'title': 'MTF-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'adaf32a1-af07-42bd-bdcc-9cfce1bc4cb1', 'status': 'released'} dm3 3L 9428828 9446645 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF828CYL/, /files/ENCFF479RCH/ 1024401040 Kevin White, UChicago dd46f214b6665be181679dfefd38a892 https://www.encodeproject.org/files/ENCFF636YCP/@@download/ENCFF636YCP.bam released s3://encode-public/2018/02/02/e19c11b0-db99-477b-8662-d73b49a0656b/ENCFF636YCP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF903XGK bigWig bigWig signal of unique reads dm6 ENCSR657JFQ Control ChIP-seq /fly-donors/ENCDO438IXA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39089/'], '@type': ['Target', 'Item'], 'name': 'MTF-1-dmelanogaster', 'label': 'MTF-1', '@id': '/targets/MTF-1-dmelanogaster/', 'title': 'MTF-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'adaf32a1-af07-42bd-bdcc-9cfce1bc4cb1', 'status': 'released'} dm3 3L 9428828 9446645 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF636YCP/ 17592869 Kevin White, UChicago 3809560712e43c343ca1a4a46bbf88c4 https://www.encodeproject.org/files/ENCFF903XGK/@@download/ENCFF903XGK.bigWig released s3://encode-public/2018/02/02/24cfa7ba-8ec4-48bf-bb3f-ebca09ee43fa/ENCFF903XGK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF751XHT bigWig bigWig read-depth normalized signal dm6 ENCSR657JFQ Control ChIP-seq /fly-donors/ENCDO438IXA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39089/'], '@type': ['Target', 'Item'], 'name': 'MTF-1-dmelanogaster', 'label': 'MTF-1', '@id': '/targets/MTF-1-dmelanogaster/', 'title': 'MTF-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'adaf32a1-af07-42bd-bdcc-9cfce1bc4cb1', 'status': 'released'} dm3 3L 9428828 9446645 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF636YCP/ 17619846 Kevin White, UChicago fed3aa05fd7dd86fe414b0edbb059611 https://www.encodeproject.org/files/ENCFF751XHT/@@download/ENCFF751XHT.bigWig released s3://encode-public/2018/02/02/f92e44cb-bbd4-44f7-8993-85d06b79bb0c/ENCFF751XHT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF449VCQ fastq fastq reads ENCSR086AUV Control ChIP-seq /worm-donors/ENCDO583OPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180575/'], '@type': ['Target', 'Item'], 'name': 'tra-4-celegans', 'label': 'tra-4', '@id': '/targets/tra-4-celegans/', 'title': 'tra-4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '429f90dc-ea52-4d71-9e6e-9da5de211951', 'status': 'released'} ce11 X 2840685 2875481 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 326721464 Kevin White, UChicago a2f0bf5ac24d8aa0625f5f2d3903489d https://www.encodeproject.org/files/ENCFF449VCQ/@@download/ENCFF449VCQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/91f7c888-ff13-4b23-ab7c-73db0b5202d7/ENCFF449VCQ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF757NFM bam bam alignments ce10 ENCSR086AUV Control ChIP-seq /worm-donors/ENCDO583OPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180575/'], '@type': ['Target', 'Item'], 'name': 'tra-4-celegans', 'label': 'tra-4', '@id': '/targets/tra-4-celegans/', 'title': 'tra-4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '429f90dc-ea52-4d71-9e6e-9da5de211951', 'status': 'released'} ce11 X 2840685 2875481 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF449VCQ/ 425140714 Kevin White, UChicago 0d079685b1da62552e3560666690e0bc https://www.encodeproject.org/files/ENCFF757NFM/@@download/ENCFF757NFM.bam released s3://encode-public/2017/10/06/3c1dca53-d10b-4ea2-87c0-9e2f75f6e5bc/ENCFF757NFM.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF051IGG bam bam alignments ce11 ENCSR086AUV Control ChIP-seq /worm-donors/ENCDO583OPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180575/'], '@type': ['Target', 'Item'], 'name': 'tra-4-celegans', 'label': 'tra-4', '@id': '/targets/tra-4-celegans/', 'title': 'tra-4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '429f90dc-ea52-4d71-9e6e-9da5de211951', 'status': 'released'} ce11 X 2840685 2875481 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF449VCQ/ 425511594 Kevin White, UChicago ef5de74bcfade1f598fc18ed9592d1f7 https://www.encodeproject.org/files/ENCFF051IGG/@@download/ENCFF051IGG.bam released s3://encode-public/2017/10/06/dce3110b-9ab1-474e-9731-caf4579a0299/ENCFF051IGG.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF896PGN bigWig bigWig read-depth normalized signal ce10 ENCSR086AUV Control ChIP-seq /worm-donors/ENCDO583OPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180575/'], '@type': ['Target', 'Item'], 'name': 'tra-4-celegans', 'label': 'tra-4', '@id': '/targets/tra-4-celegans/', 'title': 'tra-4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '429f90dc-ea52-4d71-9e6e-9da5de211951', 'status': 'released'} ce11 X 2840685 2875481 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF757NFM/ 9976290 Kevin White, UChicago a3bdd68453983341e6e1d671370a631e https://www.encodeproject.org/files/ENCFF896PGN/@@download/ENCFF896PGN.bigWig released s3://encode-public/2017/10/09/43f4fe71-06ed-4ddb-97f9-b81e53df037d/ENCFF896PGN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF701EZB bigWig bigWig signal of unique reads ce10 ENCSR086AUV Control ChIP-seq /worm-donors/ENCDO583OPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180575/'], '@type': ['Target', 'Item'], 'name': 'tra-4-celegans', 'label': 'tra-4', '@id': '/targets/tra-4-celegans/', 'title': 'tra-4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '429f90dc-ea52-4d71-9e6e-9da5de211951', 'status': 'released'} ce11 X 2840685 2875481 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF757NFM/ 9994650 Kevin White, UChicago 2c4dea612193cade690cb05d6324f222 https://www.encodeproject.org/files/ENCFF701EZB/@@download/ENCFF701EZB.bigWig released s3://encode-public/2017/10/09/6d50387b-2611-4261-a08e-95acdeff9df9/ENCFF701EZB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF783LHI bigWig bigWig read-depth normalized signal ce11 ENCSR086AUV Control ChIP-seq /worm-donors/ENCDO583OPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180575/'], '@type': ['Target', 'Item'], 'name': 'tra-4-celegans', 'label': 'tra-4', '@id': '/targets/tra-4-celegans/', 'title': 'tra-4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '429f90dc-ea52-4d71-9e6e-9da5de211951', 'status': 'released'} ce11 X 2840685 2875481 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF051IGG/ 9974052 Kevin White, UChicago ce17c8c332abd97f2636d5f3c2a781ef https://www.encodeproject.org/files/ENCFF783LHI/@@download/ENCFF783LHI.bigWig released s3://encode-public/2017/10/09/f9a53df9-7b08-4a04-884e-9bf2665a2fcb/ENCFF783LHI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF918WLN bigWig bigWig signal of unique reads ce11 ENCSR086AUV Control ChIP-seq /worm-donors/ENCDO583OPC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180575/'], '@type': ['Target', 'Item'], 'name': 'tra-4-celegans', 'label': 'tra-4', '@id': '/targets/tra-4-celegans/', 'title': 'tra-4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '429f90dc-ea52-4d71-9e6e-9da5de211951', 'status': 'released'} ce11 X 2840685 2875481 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF051IGG/ 9989850 Kevin White, UChicago d34f751971c858ce354c43537d233d7f https://www.encodeproject.org/files/ENCFF918WLN/@@download/ENCFF918WLN.bigWig released s3://encode-public/2017/10/09/929561c1-ee47-4441-825c-30436e0ec558/ENCFF918WLN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF064CSR fastq fastq reads ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 156975740 Kevin White, UChicago 0e0b1d203463ea26145e42fc34594173 https://www.encodeproject.org/files/ENCFF064CSR/@@download/ENCFF064CSR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2018/01/10/48910919-adfa-42e6-be21-805c8982abc7/ENCFF064CSR.fastq.gz missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF171TGW fastq fastq reads ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 204490340 Kevin White, UChicago 1688b0fbf0beec0a6e855f0164d3b5cf https://www.encodeproject.org/files/ENCFF171TGW/@@download/ENCFF171TGW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2018/01/10/de671f5c-7bb9-4e82-8906-d812b7c43a03/ENCFF171TGW.fastq.gz missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF104PKU bam bam alignments ce11 ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF171TGW/, /files/ENCFF064CSR/, /files/ENCFF586MOL/ 221363675 Kevin White, UChicago 3ffbd13cc6bd1ccbbfa96957df87728a https://www.encodeproject.org/files/ENCFF104PKU/@@download/ENCFF104PKU.bam released s3://encode-public/2018/01/10/60a13935-d043-41ee-a130-b47c5f8550d5/ENCFF104PKU.bam Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF076JHD bigWig bigWig signal of unique reads ce11 ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF104PKU/ 9985647 Kevin White, UChicago 361571c0366f710f8067f1b7ccb3dd12 https://www.encodeproject.org/files/ENCFF076JHD/@@download/ENCFF076JHD.bigWig released s3://encode-public/2018/01/10/d9f0aad3-d28f-41ae-85cb-f67101e54805/ENCFF076JHD.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF105QQI bam bam alignments ce10 ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF171TGW/, /files/ENCFF064CSR/, /files/ENCFF987UMF/ 221098360 Kevin White, UChicago a4c8f0fae15f3c0a47b05c1e56ecfcb8 https://www.encodeproject.org/files/ENCFF105QQI/@@download/ENCFF105QQI.bam released s3://encode-public/2018/01/10/b1a7db4e-e0fe-4f0c-b71c-cbcb291bc8db/ENCFF105QQI.bam Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF473FRN bigWig bigWig signal of unique reads ce10 ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF105QQI/ 9988862 Kevin White, UChicago 27705eac495d24e6e49136eb19a32e52 https://www.encodeproject.org/files/ENCFF473FRN/@@download/ENCFF473FRN.bigWig released s3://encode-public/2018/01/10/de853470-27a9-477d-961f-d8f038b25fcc/ENCFF473FRN.bigWig Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF169VMO bigWig bigWig read-depth normalized signal ce11 ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF104PKU/ 10045523 Kevin White, UChicago 78550d4893a37bb1251863fe3dc8d9ec https://www.encodeproject.org/files/ENCFF169VMO/@@download/ENCFF169VMO.bigWig released s3://encode-public/2018/01/10/b7749eca-4b47-4833-8b97-369736060f49/ENCFF169VMO.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF888ZWG bigWig bigWig read-depth normalized signal ce10 ENCSR086JMC Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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https://www.encodeproject.org/files/ENCFF329DNO/@@download/ENCFF329DNO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/76d72e84-a72b-49ab-a796-8c331c0ea9bf/ENCFF329DNO.fastq.gz ENCFF851ORE bam bam unfiltered alignments hg19 ENCSR118FQN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF733QWE/, /files/ENCFF901KCC/, /files/ENCFF807MUK/, /files/ENCFF329DNO/, /files/ENCFF489APN/ 4895364323 ENCODE Processing Pipeline 1e1a6366d9bcf1c84dec48999a973f35 https://www.encodeproject.org/files/ENCFF851ORE/@@download/ENCFF851ORE.bam released s3://encode-public/2019/02/08/e9a2c414-4757-495a-950b-d6947717e860/ENCFF851ORE.bam ENCODE3 hg19 archived ENCFF591VCF bam bam alignments GRCh38 ENCSR118FQN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF733QWE/, /files/ENCFF901KCC/, 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ENCSR118FQN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF489APN/, /files/ENCFF733QWE/, /files/ENCFF110MCL/, /files/ENCFF329DNO/, /files/ENCFF901KCC/ 4174599253 ENCODE Processing Pipeline 539e8d8829c251912ace1c3495298cc3 https://www.encodeproject.org/files/ENCFF831CSZ/@@download/ENCFF831CSZ.bam released s3://encode-public/2020/09/20/9bebe3f1-1659-4d18-b550-2053bc6121a0/ENCFF831CSZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF038YPX bam bam alignments ce11 ENCSR345XQL Control ChIP-seq /worm-donors/ENCDO284RVY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': 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ENCSR345XQL Control ChIP-seq /worm-donors/ENCDO284RVY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187348/'], '@type': ['Target', 'Item'], 'name': 'K12H6.12-celegans', 'label': 'K12H6.12', '@id': '/targets/K12H6.12-celegans/', 'title': 'K12H6.12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '38fec703-805d-4981-ad5e-a991afe27b9a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3 3_1 50 single-ended 843620234 Kevin White, UChicago 46a670ee1962bf0213af3d4cf2405bb2 https://www.encodeproject.org/files/ENCFF626VZC/@@download/ENCFF626VZC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/5a1b4c16-ade9-4b5d-9beb-0aa442a888f9/ENCFF626VZC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF200VLH bigWig bigWig read-depth normalized signal ce11 ENCSR345XQL Control ChIP-seq /worm-donors/ENCDO284RVY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187348/'], '@type': ['Target', 'Item'], 'name': 'K12H6.12-celegans', 'label': 'K12H6.12', '@id': '/targets/K12H6.12-celegans/', 'title': 'K12H6.12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '38fec703-805d-4981-ad5e-a991afe27b9a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 2, 3 2_1, 3_1 /files/ENCFF038YPX/ 9905843 Kevin White, UChicago 1ac12035029fe41e35900a92b7475cee https://www.encodeproject.org/files/ENCFF200VLH/@@download/ENCFF200VLH.bigWig released s3://encode-public/2018/03/01/7933ca7b-9bee-44db-8b69-864c50bbc8dd/ENCFF200VLH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF117DQU bigWig bigWig signal of unique reads ce11 ENCSR345XQL Control ChIP-seq /worm-donors/ENCDO284RVY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187348/'], '@type': ['Target', 'Item'], 'name': 'K12H6.12-celegans', 'label': 'K12H6.12', '@id': '/targets/K12H6.12-celegans/', 'title': 'K12H6.12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '38fec703-805d-4981-ad5e-a991afe27b9a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 2, 3 2_1, 3_1 /files/ENCFF038YPX/ 9943124 Kevin White, UChicago c253c30a3b4c7827e7dbe51f930075d0 https://www.encodeproject.org/files/ENCFF117DQU/@@download/ENCFF117DQU.bigWig released s3://encode-public/2018/03/01/f0105ace-e412-40b2-9b50-9a6516a77531/ENCFF117DQU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF187FWF fastq fastq reads ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 1129682929 Bradley Bernstein, Broad ff5cdfcb5dca5f218a68ab0743d925d6 SRA:SRR10838011 https://www.encodeproject.org/files/ENCFF187FWF/@@download/ENCFF187FWF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/4c80ccb0-e3b8-4dcb-b2e5-a497eb87c292/ENCFF187FWF.fastq.gz ENCFF549PVM fastq fastq reads ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 1145077464 Bradley Bernstein, Broad b2e8c413155f7106b3b8171c02d0fa39 SRA:SRR10838012 https://www.encodeproject.org/files/ENCFF549PVM/@@download/ENCFF549PVM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/bd427cda-7dcc-4abd-999c-96af423ef385/ENCFF549PVM.fastq.gz ENCFF984TNT bam bam unfiltered alignments hg19 ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF187FWF/, /files/ENCFF599MFK/, /files/ENCFF807MUK/, /files/ENCFF549PVM/, /files/ENCFF102SFU/, /files/ENCFF876EUR/, /files/ENCFF950GED/ 5681854654 ENCODE Processing Pipeline 86c7e49ae7855f6d595dabb04526f9e9 https://www.encodeproject.org/files/ENCFF984TNT/@@download/ENCFF984TNT.bam released s3://encode-public/2019/02/08/7882b622-a2c5-46bd-911c-f8f076f91706/ENCFF984TNT.bam ENCODE3 hg19 archived ENCFF535IMT bam bam alignments GRCh38 ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF187FWF/, /files/ENCFF599MFK/, /files/ENCFF643CGH/, /files/ENCFF549PVM/, /files/ENCFF102SFU/, /files/ENCFF876EUR/, /files/ENCFF950GED/ 4691669387 ENCODE Processing Pipeline ada70b54d135b2a0f6c694716cc3bf83 https://www.encodeproject.org/files/ENCFF535IMT/@@download/ENCFF535IMT.bam released s3://encode-public/2019/02/08/1e11eb80-2bad-49bc-8119-b1784ab68e2e/ENCFF535IMT.bam ENCODE3 GRCh38 archived ENCFF565OMZ bam bam unfiltered alignments GRCh38 ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF187FWF/, /files/ENCFF599MFK/, /files/ENCFF643CGH/, /files/ENCFF549PVM/, /files/ENCFF102SFU/, /files/ENCFF876EUR/, /files/ENCFF950GED/ 5698055896 ENCODE Processing Pipeline 87abb21fc345525a71d6222601e756f8 https://www.encodeproject.org/files/ENCFF565OMZ/@@download/ENCFF565OMZ.bam released s3://encode-public/2019/02/08/c716fbe8-79af-4114-a300-8044ebc47876/ENCFF565OMZ.bam ENCODE3 GRCh38 archived ENCFF349BOR bam bam alignments hg19 ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF187FWF/, /files/ENCFF599MFK/, /files/ENCFF807MUK/, /files/ENCFF549PVM/, /files/ENCFF102SFU/, /files/ENCFF876EUR/, /files/ENCFF950GED/ 4684733318 ENCODE Processing Pipeline a2fcfb2dd5ff8c24ba90889c7137ad4e https://www.encodeproject.org/files/ENCFF349BOR/@@download/ENCFF349BOR.bam released s3://encode-public/2019/02/08/2d652514-54d4-4fc8-b6a4-ec30d97b8de4/ENCFF349BOR.bam ENCODE3 hg19 archived ENCFF950GED fastq fastq reads ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 1003441411 Bradley Bernstein, Broad 6c80e7a4aa1fb7d664df3f59ef2d6405 SRA:SRR10838007 https://www.encodeproject.org/files/ENCFF950GED/@@download/ENCFF950GED.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/0be1d54c-9620-4146-87b6-2d5ff1704b00/ENCFF950GED.fastq.gz ENCFF599MFK fastq fastq reads ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 746180791 Bradley Bernstein, Broad b69e57158388a7aae5f1cf739dcc2674 SRA:SRR10838008 https://www.encodeproject.org/files/ENCFF599MFK/@@download/ENCFF599MFK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/121a305a-eb9d-467d-93c6-101beb800429/ENCFF599MFK.fastq.gz ENCFF102SFU fastq fastq reads ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 722368409 Bradley Bernstein, Broad 50dc3a14d4da8fa29001c41b04bb2b83 SRA:SRR10838009 https://www.encodeproject.org/files/ENCFF102SFU/@@download/ENCFF102SFU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/f91ed1d1-1ab7-4b95-ba27-d77a44c1112e/ENCFF102SFU.fastq.gz ENCFF876EUR fastq fastq reads ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 986189763 Bradley Bernstein, Broad f25a5a03d5310a1787e4eb96ad0d08d9 SRA:SRR10838010 https://www.encodeproject.org/files/ENCFF876EUR/@@download/ENCFF876EUR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/9db6da74-51ee-48b6-b0b9-ddc74f4677a6/ENCFF876EUR.fastq.gz ENCFF994EQP bam bam unfiltered alignments GRCh38 ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF876EUR/, /files/ENCFF599MFK/, /files/ENCFF950GED/, /files/ENCFF102SFU/, /files/ENCFF187FWF/, /files/ENCFF110MCL/, /files/ENCFF549PVM/ 5687881855 ENCODE Processing Pipeline fc9bb8d7bc3ee4c751a3cda3507ecde3 https://www.encodeproject.org/files/ENCFF994EQP/@@download/ENCFF994EQP.bam released s3://encode-public/2020/09/19/33254f07-1548-4f67-b422-e5271bc3785c/ENCFF994EQP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF076ONX bam bam alignments GRCh38 ENCSR524NCH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF876EUR/, /files/ENCFF599MFK/, /files/ENCFF950GED/, /files/ENCFF102SFU/, /files/ENCFF187FWF/, /files/ENCFF110MCL/, /files/ENCFF549PVM/ 4718533705 ENCODE Processing Pipeline a373beaf91b740e8d9f6688c6a79cbfd https://www.encodeproject.org/files/ENCFF076ONX/@@download/ENCFF076ONX.bam released s3://encode-public/2020/09/19/7c53631c-8843-42a6-8a77-48a137993c3d/ENCFF076ONX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF922ZXX fastq fastq reads ENCSR239LBE Control ChIP-seq /fly-donors/ENCDO963JVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38063/'], '@type': ['Target', 'Item'], 'name': 'CG1233-dmelanogaster', 'label': 'CG1233', '@id': '/targets/CG1233-dmelanogaster/', 'title': 'CG1233 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4e4abd3-ad63-4287-ae44-fe8409132784', 'status': 'released'} dm3 3L 358824 381825 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 597681292 Kevin White, UChicago d9b1e4c3012acc3b37321e89669d2d70 https://www.encodeproject.org/files/ENCFF922ZXX/@@download/ENCFF922ZXX.fastq.gz Illumina HiSeq 4000 /files/ENCFF292PXZ/ released s3://encode-public/2018/02/01/24c8d8cd-88ec-43e8-b319-0b24539534ff/ENCFF922ZXX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF869CRJ bam bam alignments dm6 ENCSR239LBE Control ChIP-seq /fly-donors/ENCDO963JVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38063/'], '@type': ['Target', 'Item'], 'name': 'CG1233-dmelanogaster', 'label': 'CG1233', '@id': '/targets/CG1233-dmelanogaster/', 'title': 'CG1233 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4e4abd3-ad63-4287-ae44-fe8409132784', 'status': 'released'} dm3 3L 358824 381825 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF922ZXX/, /files/ENCFF479RCH/ 801361776 Kevin White, UChicago 44c261c860887cdfab0577dbb337c807 https://www.encodeproject.org/files/ENCFF869CRJ/@@download/ENCFF869CRJ.bam released s3://encode-public/2018/02/02/c4739611-9d46-4b85-956d-b61dc0762e3d/ENCFF869CRJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF904ILQ bigWig bigWig read-depth normalized signal dm6 ENCSR239LBE Control ChIP-seq /fly-donors/ENCDO963JVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38063/'], '@type': ['Target', 'Item'], 'name': 'CG1233-dmelanogaster', 'label': 'CG1233', '@id': '/targets/CG1233-dmelanogaster/', 'title': 'CG1233 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4e4abd3-ad63-4287-ae44-fe8409132784', 'status': 'released'} dm3 3L 358824 381825 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF869CRJ/ 17583579 Kevin White, UChicago 74158e465c54770fac9dfb756395fa49 https://www.encodeproject.org/files/ENCFF904ILQ/@@download/ENCFF904ILQ.bigWig released s3://encode-public/2018/02/02/8a579f5d-8e20-498c-9e38-73363b2db9cc/ENCFF904ILQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF423RWO bigWig bigWig signal of unique reads dm6 ENCSR239LBE Control ChIP-seq /fly-donors/ENCDO963JVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38063/'], '@type': ['Target', 'Item'], 'name': 'CG1233-dmelanogaster', 'label': 'CG1233', '@id': '/targets/CG1233-dmelanogaster/', 'title': 'CG1233 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4e4abd3-ad63-4287-ae44-fe8409132784', 'status': 'released'} dm3 3L 358824 381825 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF869CRJ/ 17576374 Kevin White, UChicago 178fd840c1b760b432ba49474ccccb2b https://www.encodeproject.org/files/ENCFF423RWO/@@download/ENCFF423RWO.bigWig released s3://encode-public/2018/02/02/9ebb8a9e-dd73-4e2a-96d7-c0f648aff9ec/ENCFF423RWO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF901GTY fastq fastq reads ENCSR378LQR Control ChIP-seq /fly-donors/ENCDO438KDH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43150/'], '@type': ['Target', 'Item'], 'name': 'HLHmδ-dmelanogaster', 'label': 'HLHmδ', '@id': '/targets/HLHm%CE%B4-dmelanogaster/', 'title': 'HLHmδ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '646de885-0cb0-4fdc-9d2a-7ce61b98ef1b', 'status': 'released'} dm3 3R 21744233 21847458 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 768952784 Kevin White, UChicago b047160166ccb45fdb3ca1f7f1f92a9e https://www.encodeproject.org/files/ENCFF901GTY/@@download/ENCFF901GTY.fastq.gz Illumina HiSeq 4000 /files/ENCFF630MIR/ released s3://encode-public/2018/02/01/24886971-d4ba-4736-bdb5-307d830576f8/ENCFF901GTY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF905JUS bam bam alignments dm6 ENCSR378LQR Control ChIP-seq /fly-donors/ENCDO438KDH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43150/'], '@type': ['Target', 'Item'], 'name': 'HLHmδ-dmelanogaster', 'label': 'HLHmδ', '@id': '/targets/HLHm%CE%B4-dmelanogaster/', 'title': 'HLHmδ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '646de885-0cb0-4fdc-9d2a-7ce61b98ef1b', 'status': 'released'} dm3 3R 21744233 21847458 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF901GTY/, /files/ENCFF479RCH/ 1023800565 Kevin White, UChicago 0ad13e6e0287316c62895156fea667f1 https://www.encodeproject.org/files/ENCFF905JUS/@@download/ENCFF905JUS.bam released s3://encode-public/2018/02/02/492b7b58-9a6e-408f-8270-7ac37cf22659/ENCFF905JUS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF671QLX bigWig bigWig read-depth normalized signal dm6 ENCSR378LQR Control ChIP-seq /fly-donors/ENCDO438KDH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43150/'], '@type': ['Target', 'Item'], 'name': 'HLHmδ-dmelanogaster', 'label': 'HLHmδ', '@id': '/targets/HLHm%CE%B4-dmelanogaster/', 'title': 'HLHmδ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '646de885-0cb0-4fdc-9d2a-7ce61b98ef1b', 'status': 'released'} dm3 3R 21744233 21847458 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF905JUS/ 17657817 Kevin White, UChicago e2181bae63d4f88ef6c8c0ff0d5ba918 https://www.encodeproject.org/files/ENCFF671QLX/@@download/ENCFF671QLX.bigWig released s3://encode-public/2018/02/02/77b86be1-7217-4d9e-a2ba-fb8e58555983/ENCFF671QLX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF850TZU bigWig bigWig signal of unique reads dm6 ENCSR378LQR Control ChIP-seq /fly-donors/ENCDO438KDH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43150/'], '@type': ['Target', 'Item'], 'name': 'HLHmδ-dmelanogaster', 'label': 'HLHmδ', '@id': '/targets/HLHm%CE%B4-dmelanogaster/', 'title': 'HLHmδ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '646de885-0cb0-4fdc-9d2a-7ce61b98ef1b', 'status': 'released'} dm3 3R 21744233 21847458 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF905JUS/ 17631917 Kevin White, UChicago 27fbf31e4e9f71f385c2c86494125072 https://www.encodeproject.org/files/ENCFF850TZU/@@download/ENCFF850TZU.bigWig released s3://encode-public/2018/02/02/08196988-f432-4794-82be-4e8d7906d5d2/ENCFF850TZU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF279YSJ fastq fastq reads ENCSR478KQW Control ChIP-seq /fly-donors/ENCDO233YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35198/'], '@type': ['Target', 'Item'], 'name': 'CG17568-dmelanogaster', 'label': 'CG17568', '@id': '/targets/CG17568-dmelanogaster/', 'title': 'CG17568 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'c6369f62-06a3-450c-8050-e466fa1e4e71', 'status': 'released'} dm3 2L 19162402 19183533 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 769068376 Kevin White, UChicago 7bc2a25aa0e74bb3ecc9e17de660d61a https://www.encodeproject.org/files/ENCFF279YSJ/@@download/ENCFF279YSJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF474BWS/ released s3://encode-public/2018/02/01/b1c4a2b6-5cf6-4a01-93e5-02d845d9cc98/ENCFF279YSJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF212EFW bam bam alignments dm6 ENCSR478KQW Control ChIP-seq /fly-donors/ENCDO233YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35198/'], '@type': ['Target', 'Item'], 'name': 'CG17568-dmelanogaster', 'label': 'CG17568', '@id': '/targets/CG17568-dmelanogaster/', 'title': 'CG17568 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'c6369f62-06a3-450c-8050-e466fa1e4e71', 'status': 'released'} dm3 2L 19162402 19183533 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF279YSJ/, /files/ENCFF479RCH/ 1016750322 Kevin White, UChicago fe983a25837d3012ddd645c9bd345eb0 https://www.encodeproject.org/files/ENCFF212EFW/@@download/ENCFF212EFW.bam released s3://encode-public/2018/02/02/c43b83d7-6fd2-4ff1-bb67-77f3f7a0e2f9/ENCFF212EFW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF974MBQ bigWig bigWig read-depth normalized signal dm6 ENCSR478KQW Control ChIP-seq /fly-donors/ENCDO233YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35198/'], '@type': ['Target', 'Item'], 'name': 'CG17568-dmelanogaster', 'label': 'CG17568', '@id': '/targets/CG17568-dmelanogaster/', 'title': 'CG17568 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'c6369f62-06a3-450c-8050-e466fa1e4e71', 'status': 'released'} dm3 2L 19162402 19183533 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF212EFW/ 17646138 Kevin White, UChicago 6b93950629e29f499aa8fe2b6be86ca2 https://www.encodeproject.org/files/ENCFF974MBQ/@@download/ENCFF974MBQ.bigWig released s3://encode-public/2018/02/02/6fed9262-f9da-4a53-bf05-0979badabb81/ENCFF974MBQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF632KRQ bigWig bigWig signal of unique reads dm6 ENCSR478KQW Control ChIP-seq /fly-donors/ENCDO233YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35198/'], '@type': ['Target', 'Item'], 'name': 'CG17568-dmelanogaster', 'label': 'CG17568', '@id': '/targets/CG17568-dmelanogaster/', 'title': 'CG17568 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'c6369f62-06a3-450c-8050-e466fa1e4e71', 'status': 'released'} dm3 2L 19162402 19183533 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF212EFW/ 17626820 Kevin White, UChicago fc1823b272998f59662ab71bf5795f3f https://www.encodeproject.org/files/ENCFF632KRQ/@@download/ENCFF632KRQ.bigWig released s3://encode-public/2018/02/02/7f3ac6a6-96f8-4517-86c1-beeb20c7bbd8/ENCFF632KRQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF758KAD fastq fastq reads ENCSR664RUV Control ChIP-seq /fly-donors/ENCDO235QKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38072/'], '@type': ['Target', 'Item'], 'name': 'kah-dmelanogaster', 'label': 'kah', '@id': '/targets/kah-dmelanogaster/', 'title': 'kah (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fd0ac093-d9fd-43a9-9112-b9b63c95f09c', 'status': 'released'} dm3 3L 575719 598734 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1006543639 Kevin White, UChicago ad658d56ce5fb5462ee44ac4657acc67 https://www.encodeproject.org/files/ENCFF758KAD/@@download/ENCFF758KAD.fastq.gz Illumina HiSeq 4000 /files/ENCFF471IIR/ released s3://encode-public/2018/02/01/a89e1036-73b4-417a-bf07-e2a81c63ff4b/ENCFF758KAD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF992ZIF bam bam alignments dm6 ENCSR664RUV Control ChIP-seq /fly-donors/ENCDO235QKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38072/'], '@type': ['Target', 'Item'], 'name': 'kah-dmelanogaster', 'label': 'kah', '@id': '/targets/kah-dmelanogaster/', 'title': 'kah (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fd0ac093-d9fd-43a9-9112-b9b63c95f09c', 'status': 'released'} dm3 3L 575719 598734 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF758KAD/, /files/ENCFF479RCH/ 1336292355 Kevin White, UChicago 793e4cf49b71e388ec5e1386a652d6c8 https://www.encodeproject.org/files/ENCFF992ZIF/@@download/ENCFF992ZIF.bam released s3://encode-public/2018/02/02/c02164cf-2466-4433-8163-a3d40d086eac/ENCFF992ZIF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF460EIH bigWig bigWig read-depth normalized signal dm6 ENCSR664RUV Control ChIP-seq /fly-donors/ENCDO235QKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38072/'], '@type': ['Target', 'Item'], 'name': 'kah-dmelanogaster', 'label': 'kah', '@id': '/targets/kah-dmelanogaster/', 'title': 'kah (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fd0ac093-d9fd-43a9-9112-b9b63c95f09c', 'status': 'released'} dm3 3L 575719 598734 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF992ZIF/ 17657577 Kevin White, UChicago 1da40f0e5c2432b38ac1321988cdef83 https://www.encodeproject.org/files/ENCFF460EIH/@@download/ENCFF460EIH.bigWig released s3://encode-public/2018/02/02/bf5d76c6-739c-4547-9685-26c2fc1bf20a/ENCFF460EIH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF777PJU bigWig bigWig signal of unique reads dm6 ENCSR664RUV Control ChIP-seq /fly-donors/ENCDO235QKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38072/'], '@type': ['Target', 'Item'], 'name': 'kah-dmelanogaster', 'label': 'kah', '@id': '/targets/kah-dmelanogaster/', 'title': 'kah (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fd0ac093-d9fd-43a9-9112-b9b63c95f09c', 'status': 'released'} dm3 3L 575719 598734 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF992ZIF/ 17635128 Kevin White, UChicago 45ea9efc22d2f36727c01b9c6761cc5e https://www.encodeproject.org/files/ENCFF777PJU/@@download/ENCFF777PJU.bigWig released s3://encode-public/2018/02/02/16f46932-969e-4430-a91b-fe5b22306781/ENCFF777PJU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF156YSY fastq fastq reads ENCSR763WTN Control ChIP-seq /fly-donors/ENCDO334YVD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42494/'], '@type': ['Target', 'Item'], 'name': 'dmrt93B-dmelanogaster', 'label': 'dmrt93B', '@id': '/targets/dmrt93B-dmelanogaster/', 'title': 'dmrt93B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62407d8f-bfc2-4ed2-88da-efd392eef403', 'status': 'released'} dm3 3R 21063762 21084603 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1094480828 Kevin White, UChicago 3667f6e4841a33ac9aeb6f2cf8aef47d https://www.encodeproject.org/files/ENCFF156YSY/@@download/ENCFF156YSY.fastq.gz Illumina HiSeq 4000 /files/ENCFF974GMY/ released s3://encode-public/2018/02/01/020ac559-fd24-42d1-91e1-6fcf74c9a66d/ENCFF156YSY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF694NVH bam bam alignments dm6 ENCSR763WTN Control ChIP-seq /fly-donors/ENCDO334YVD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42494/'], '@type': ['Target', 'Item'], 'name': 'dmrt93B-dmelanogaster', 'label': 'dmrt93B', '@id': '/targets/dmrt93B-dmelanogaster/', 'title': 'dmrt93B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62407d8f-bfc2-4ed2-88da-efd392eef403', 'status': 'released'} dm3 3R 21063762 21084603 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF156YSY/, /files/ENCFF479RCH/ 1465176861 Kevin White, UChicago cb29a48e17a96a38bbf2aad8c626f60d https://www.encodeproject.org/files/ENCFF694NVH/@@download/ENCFF694NVH.bam released s3://encode-public/2018/02/02/5a2b5c71-f8bd-4c1c-8159-41ac64669dc3/ENCFF694NVH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF559GCV bigWig bigWig signal of unique reads dm6 ENCSR763WTN Control ChIP-seq /fly-donors/ENCDO334YVD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42494/'], '@type': ['Target', 'Item'], 'name': 'dmrt93B-dmelanogaster', 'label': 'dmrt93B', '@id': '/targets/dmrt93B-dmelanogaster/', 'title': 'dmrt93B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62407d8f-bfc2-4ed2-88da-efd392eef403', 'status': 'released'} dm3 3R 21063762 21084603 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF694NVH/ 13985913 Kevin White, UChicago 2ee28751bdbbbc475e34b9c59c5d5646 https://www.encodeproject.org/files/ENCFF559GCV/@@download/ENCFF559GCV.bigWig released s3://encode-public/2018/02/04/136fe09c-cf32-41e1-a6d2-986dada9ded8/ENCFF559GCV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF218XHM bigWig bigWig read-depth normalized signal dm6 ENCSR763WTN Control ChIP-seq /fly-donors/ENCDO334YVD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42494/'], '@type': ['Target', 'Item'], 'name': 'dmrt93B-dmelanogaster', 'label': 'dmrt93B', '@id': '/targets/dmrt93B-dmelanogaster/', 'title': 'dmrt93B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62407d8f-bfc2-4ed2-88da-efd392eef403', 'status': 'released'} dm3 3R 21063762 21084603 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF694NVH/ 13947248 Kevin White, UChicago 5a71aac6ac8d26e86893b515c15722c3 https://www.encodeproject.org/files/ENCFF218XHM/@@download/ENCFF218XHM.bigWig released s3://encode-public/2018/02/04/10337c1f-34ab-40b0-9bb4-708088d1acfd/ENCFF218XHM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF974GMY fastq fastq reads ENCSR490YPO Control ChIP-seq /fly-donors/ENCDO807ENH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38518/'], '@type': ['Target', 'Item'], 'name': 'CG15011-dmelanogaster', 'label': 'CG15011', '@id': '/targets/CG15011-dmelanogaster/', 'title': 'CG15011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f031e15-006e-41f9-8a5d-e0b9bbd19628', 'status': 'released'} dm3 3L 4244218 4265629 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 718223930 Kevin White, UChicago e72f696abda7e9e1538297e9d5e07221 https://www.encodeproject.org/files/ENCFF974GMY/@@download/ENCFF974GMY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/01/f681d602-b055-4557-9726-8bd8ea9cd13d/ENCFF974GMY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF574AZF bam bam alignments dm6 ENCSR490YPO Control ChIP-seq /fly-donors/ENCDO807ENH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38518/'], '@type': ['Target', 'Item'], 'name': 'CG15011-dmelanogaster', 'label': 'CG15011', '@id': '/targets/CG15011-dmelanogaster/', 'title': 'CG15011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f031e15-006e-41f9-8a5d-e0b9bbd19628', 'status': 'released'} dm3 3L 4244218 4265629 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF974GMY/, /files/ENCFF479RCH/ 960781984 Kevin White, UChicago a8693f763dfe058d3c31192f65c8ce6f https://www.encodeproject.org/files/ENCFF574AZF/@@download/ENCFF574AZF.bam released s3://encode-public/2018/02/03/7af730a5-337a-4db5-9ce2-3676804bdc46/ENCFF574AZF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF562UGD bigWig bigWig signal of unique reads dm6 ENCSR490YPO Control ChIP-seq /fly-donors/ENCDO807ENH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38518/'], '@type': ['Target', 'Item'], 'name': 'CG15011-dmelanogaster', 'label': 'CG15011', '@id': '/targets/CG15011-dmelanogaster/', 'title': 'CG15011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f031e15-006e-41f9-8a5d-e0b9bbd19628', 'status': 'released'} dm3 3L 4244218 4265629 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF574AZF/ 3230089 Kevin White, UChicago 2367312a67f0ae56553175ae7d1cb3dd https://www.encodeproject.org/files/ENCFF562UGD/@@download/ENCFF562UGD.bigWig released s3://encode-public/2018/02/03/96e4400d-86e6-418a-a6ed-636ff417c287/ENCFF562UGD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF621FSQ bigWig bigWig read-depth normalized signal dm6 ENCSR490YPO Control ChIP-seq /fly-donors/ENCDO807ENH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38518/'], '@type': ['Target', 'Item'], 'name': 'CG15011-dmelanogaster', 'label': 'CG15011', '@id': '/targets/CG15011-dmelanogaster/', 'title': 'CG15011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f031e15-006e-41f9-8a5d-e0b9bbd19628', 'status': 'released'} dm3 3L 4244218 4265629 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF574AZF/ 3235177 Kevin White, UChicago b7422aba8a3c474ddf5512d0188165d4 https://www.encodeproject.org/files/ENCFF621FSQ/@@download/ENCFF621FSQ.bigWig released s3://encode-public/2018/02/03/b4e015e8-a976-4338-a372-71c17d38d62b/ENCFF621FSQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF003OYR fastq fastq reads ENCSR201VAH Control ChIP-seq /human-donors/ENCDO908CUN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF810WXC/ 4226358646 Michael Snyder, Stanford 2c618bd6ebdf7be6b61f08544c4a97fc https://www.encodeproject.org/files/ENCFF003OYR/@@download/ENCFF003OYR.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/30/31d4659e-314d-4296-8405-63961e6c599c/ENCFF003OYR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF810WXC fastq fastq reads ENCSR201VAH Control ChIP-seq /human-donors/ENCDO908CUN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF003OYR/ 4360826263 Michael Snyder, Stanford 721698758ad186042c2be41cffe16ccb https://www.encodeproject.org/files/ENCFF810WXC/@@download/ENCFF810WXC.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/30/323ab0a8-0f08-4b98-a72f-c9da035c9455/ENCFF810WXC.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF222EDK bam bam unfiltered alignments GRCh38 ENCSR201VAH Control ChIP-seq /human-donors/ENCDO908CUN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF003OYR/, /files/ENCFF810WXC/ 6823206326 ENCODE Processing Pipeline c47b6722df7a0ae652ee63e688f427dd https://www.encodeproject.org/files/ENCFF222EDK/@@download/ENCFF222EDK.bam released s3://encode-public/2020/10/15/afb9388a-144c-4a8b-9b7f-4e6fb911393c/ENCFF222EDK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF704QVN bam bam alignments GRCh38 ENCSR201VAH Control ChIP-seq /human-donors/ENCDO908CUN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF003OYR/, /files/ENCFF810WXC/ 4495486266 ENCODE Processing Pipeline 60c97f9b406e9e7d4c9254201ad53bb4 https://www.encodeproject.org/files/ENCFF704QVN/@@download/ENCFF704QVN.bam released s3://encode-public/2020/10/15/c1fd46b2-1c9f-4d79-988a-283931fefb24/ENCFF704QVN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF723SAU fastq fastq reads ENCSR544QPD Control ChIP-seq /worm-donors/ENCDO016WRP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172640/'], '@type': ['Target', 'Item'], 'name': 'ceh-6-celegans', 'label': 'ceh-6', '@id': '/targets/ceh-6-celegans/', 'title': 'ceh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1a3e96b-71be-4157-862d-7aa20618d44e', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 732721473 Kevin White, UChicago 1a6c9f40d3eb10b2e88c57ee49cd8c81 https://www.encodeproject.org/files/ENCFF723SAU/@@download/ENCFF723SAU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/89c4aa25-c477-43ff-98e8-2faa85070a3d/ENCFF723SAU.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF839UMI bam bam alignments ce11 ENCSR544QPD Control ChIP-seq /worm-donors/ENCDO016WRP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172640/'], '@type': ['Target', 'Item'], 'name': 'ceh-6-celegans', 'label': 'ceh-6', '@id': '/targets/ceh-6-celegans/', 'title': 'ceh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1a3e96b-71be-4157-862d-7aa20618d44e', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF723SAU/, /files/ENCFF586MOL/ 949979293 Kevin White, UChicago 33ce24f99daff4ed534d2641246fe80f https://www.encodeproject.org/files/ENCFF839UMI/@@download/ENCFF839UMI.bam released s3://encode-public/2018/05/31/68854406-88d6-4c1b-8bc3-c3d7cad04435/ENCFF839UMI.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF365AVY bigWig bigWig read-depth normalized signal ce11 ENCSR544QPD Control ChIP-seq /worm-donors/ENCDO016WRP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172640/'], '@type': ['Target', 'Item'], 'name': 'ceh-6-celegans', 'label': 'ceh-6', '@id': '/targets/ceh-6-celegans/', 'title': 'ceh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1a3e96b-71be-4157-862d-7aa20618d44e', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF839UMI/ 10004254 Kevin White, UChicago b1f5a770eaecd474805b327d99b2d964 https://www.encodeproject.org/files/ENCFF365AVY/@@download/ENCFF365AVY.bigWig released s3://encode-public/2018/05/31/cc159b9e-c243-4573-aba9-8364fa37c9cb/ENCFF365AVY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF493ZGD bigWig bigWig signal of unique reads ce11 ENCSR544QPD Control ChIP-seq /worm-donors/ENCDO016WRP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172640/'], '@type': ['Target', 'Item'], 'name': 'ceh-6-celegans', 'label': 'ceh-6', '@id': '/targets/ceh-6-celegans/', 'title': 'ceh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1a3e96b-71be-4157-862d-7aa20618d44e', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF839UMI/ 9974019 Kevin White, UChicago 65d53bade514950a44b051d99b9ca14d https://www.encodeproject.org/files/ENCFF493ZGD/@@download/ENCFF493ZGD.bigWig released s3://encode-public/2018/05/31/6ae7776f-9e59-487c-8c2c-6166a22bd5ad/ENCFF493ZGD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF316TSO fastq fastq reads ENCSR672UXO Control ChIP-seq /human-donors/ENCDO339AAA/ EFO:0005722 SJCRH30 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF883MCA/ 9127630682 Michael Snyder, Stanford 954802fe2fd3861a1d11a87806a6a79d SRA:SRR13804794 https://www.encodeproject.org/files/ENCFF316TSO/@@download/ENCFF316TSO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/9f24739c-2c83-430e-aaad-0ac8abef4e55/ENCFF316TSO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF883MCA fastq fastq reads ENCSR672UXO Control ChIP-seq /human-donors/ENCDO339AAA/ EFO:0005722 SJCRH30 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF316TSO/ 6873536415 Michael Snyder, Stanford abd3966ffa77ab835e63de942c9ffa2e SRA:SRR13804794 https://www.encodeproject.org/files/ENCFF883MCA/@@download/ENCFF883MCA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/6e03dc87-84b4-4429-877b-764dd6f6ea37/ENCFF883MCA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF873XOV bam bam alignments GRCh38 ENCSR672UXO Control ChIP-seq /human-donors/ENCDO339AAA/ EFO:0005722 SJCRH30 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF316TSO/, /files/ENCFF883MCA/, /files/ENCFF110MCL/ 9651374400 ENCODE Processing Pipeline c16099b46361a1537f846ce44fae6ee8 https://www.encodeproject.org/files/ENCFF873XOV/@@download/ENCFF873XOV.bam released s3://encode-public/2020/08/20/53627887-5450-46b8-a976-fc73e6676244/ENCFF873XOV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF303TZP bam bam unfiltered alignments GRCh38 ENCSR672UXO Control ChIP-seq /human-donors/ENCDO339AAA/ EFO:0005722 SJCRH30 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF316TSO/, /files/ENCFF883MCA/, /files/ENCFF110MCL/ 15067520303 ENCODE Processing Pipeline fc95ad0e14e58825c9faf97d83e2c59a https://www.encodeproject.org/files/ENCFF303TZP/@@download/ENCFF303TZP.bam released s3://encode-public/2020/08/20/d101b069-fed6-4b73-8351-125dc0f30812/ENCFF303TZP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF286VWT bam bam unfiltered alignments GRCh38 ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 /files/ENCFF125DXM/, /files/ENCFF616JED/, /files/ENCFF597DVC/, /files/ENCFF848UPU/, /files/ENCFF021SLS/, /files/ENCFF714WPP/, /files/ENCFF111UHL/, /files/ENCFF110MCL/, /files/ENCFF389QBW/ 3736172673 ENCODE Processing Pipeline aebab092e348d74aea8f92e41f180179 https://www.encodeproject.org/files/ENCFF286VWT/@@download/ENCFF286VWT.bam released s3://encode-public/2020/09/20/a7d08a4c-344b-43de-bb65-e91a0408d301/ENCFF286VWT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF393NUI fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 365010929 Bradley Bernstein, Broad 4bd09c11a09d1ec6fcd9675cbba43476 SRA:SRR10837528 https://www.encodeproject.org/files/ENCFF393NUI/@@download/ENCFF393NUI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/44faa594-84a5-4abb-8ff5-344f44756a47/ENCFF393NUI.fastq.gz ENCFF752PET fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 3239382246 Bradley Bernstein, Broad d46a538784be8e864b38ce03238b9d94 SRA:SRR10837526 https://www.encodeproject.org/files/ENCFF752PET/@@download/ENCFF752PET.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/62c7d7e8-4303-42df-8dff-140b406011f7/ENCFF752PET.fastq.gz ENCFF512MZN fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 366167255 Bradley Bernstein, Broad 93b0d05fca2b6a978c70607de7259a80 SRA:SRR10837529 https://www.encodeproject.org/files/ENCFF512MZN/@@download/ENCFF512MZN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/9d76867f-3041-4191-819a-f996998e5b4e/ENCFF512MZN.fastq.gz ENCFF974QQK fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 3240568436 Bradley Bernstein, Broad 012d3154473a5b81f3d0b7cf3430cd05 SRA:SRR10837527 https://www.encodeproject.org/files/ENCFF974QQK/@@download/ENCFF974QQK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/48898468-3325-475e-a712-0c59ed941fd2/ENCFF974QQK.fastq.gz ENCFF125DXM fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 495372209 Bradley Bernstein, Broad b5159a070e6700bc1be544cc30708c5a SRA:SRR10837518 https://www.encodeproject.org/files/ENCFF125DXM/@@download/ENCFF125DXM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/f7999e39-ad75-43d7-b8df-3c0ce9240fe3/ENCFF125DXM.fastq.gz ENCFF597DVC fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 498374032 Bradley Bernstein, Broad 9fa7146cc8a9b4a52eefe620bf2f810c SRA:SRR10837519 https://www.encodeproject.org/files/ENCFF597DVC/@@download/ENCFF597DVC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/1e096a7d-688f-47ec-a3de-ec0d2d4acd65/ENCFF597DVC.fastq.gz ENCFF111UHL fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 192109304 Bradley Bernstein, Broad 6b23da42a8b5b08c0ed86047c3686a53 SRA:SRR10837520 https://www.encodeproject.org/files/ENCFF111UHL/@@download/ENCFF111UHL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/43638860-1171-413c-8141-dc89410d380e/ENCFF111UHL.fastq.gz ENCFF616JED fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 192390031 Bradley Bernstein, Broad fd03cac3c001c17039e8cdf767f78bb8 SRA:SRR10837521 https://www.encodeproject.org/files/ENCFF616JED/@@download/ENCFF616JED.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/4fa192c3-0434-4f43-b719-49daadebbd30/ENCFF616JED.fastq.gz ENCFF389QBW fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 759789073 Bradley Bernstein, Broad e722859e77b6660b1c1eb33beaf5b31c SRA:SRR10837522 https://www.encodeproject.org/files/ENCFF389QBW/@@download/ENCFF389QBW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/7099241f-e739-4549-b19f-e7caf584d796/ENCFF389QBW.fastq.gz ENCFF848UPU fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 758534891 Bradley Bernstein, Broad ba9ac6df8c4860f88c0c0fb16b68c2a4 SRA:SRR10837523 https://www.encodeproject.org/files/ENCFF848UPU/@@download/ENCFF848UPU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/6cf5e971-321d-4ae3-9261-9cf8a457f4b7/ENCFF848UPU.fastq.gz ENCFF021SLS fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 499343890 Bradley Bernstein, Broad 272d23986583bc12dff5657057994ef3 SRA:SRR10837524 https://www.encodeproject.org/files/ENCFF021SLS/@@download/ENCFF021SLS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/570a6fb1-fe6c-41d0-af66-7dc4b625f34c/ENCFF021SLS.fastq.gz ENCFF714WPP fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 501894031 Bradley Bernstein, Broad 52ef5db92805a9d9507ff8169b0d6e40 SRA:SRR10837525 https://www.encodeproject.org/files/ENCFF714WPP/@@download/ENCFF714WPP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/2f6ea494-e647-44e4-ab2b-3a87c5200784/ENCFF714WPP.fastq.gz ENCFF723KNH fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 430077992 Bradley Bernstein, Broad a618d0b4a7766fe62673a01ac0fe3204 SRA:SRR10837530 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https://www.encodeproject.org/files/ENCFF588BEN/@@download/ENCFF588BEN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/20f929c1-eefe-4639-9868-bd7a9fd81322/ENCFF588BEN.fastq.gz ENCFF448UCS fastq fastq reads ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 425453230 Bradley Bernstein, Broad 00e3150daa1a32d0b89a397cbb772e41 SRA:SRR10837533 https://www.encodeproject.org/files/ENCFF448UCS/@@download/ENCFF448UCS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/4fe9d905-b311-47fa-b58c-99d9286c1ea5/ENCFF448UCS.fastq.gz ENCFF256OOZ bam bam unfiltered alignments GRCh38 ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF111UHL/, /files/ENCFF125DXM/, /files/ENCFF021SLS/, /files/ENCFF597DVC/, 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UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF752PET/, /files/ENCFF374FIN/, /files/ENCFF974QQK/, /files/ENCFF588BEN/, /files/ENCFF393NUI/, /files/ENCFF512MZN/, /files/ENCFF110MCL/, /files/ENCFF448UCS/, /files/ENCFF723KNH/ 7940741658 ENCODE Processing Pipeline fcb586c8a264a23105dd6249082694a5 https://www.encodeproject.org/files/ENCFF660ZFE/@@download/ENCFF660ZFE.bam released s3://encode-public/2020/09/20/50fa1e28-ff40-45c0-8787-07c3a7b5421b/ENCFF660ZFE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF649TIN bam bam alignments GRCh38 ENCSR138WRC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF752PET/, /files/ENCFF374FIN/, /files/ENCFF974QQK/, /files/ENCFF588BEN/, /files/ENCFF393NUI/, /files/ENCFF512MZN/, /files/ENCFF110MCL/, /files/ENCFF448UCS/, /files/ENCFF723KNH/ 6369854023 ENCODE Processing Pipeline 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organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/6418830/'], '@type': ['Target', 'Item'], 'name': 'ceh-63-celegans', 'label': 'ceh-63', '@id': '/targets/ceh-63-celegans/', 'title': 'ceh-63 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '819c1c38-ce55-49d7-99cc-8cbacc15f825', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 964858252 Kevin White, UChicago 21865b01e81c76d34621fcca767b1f49 https://www.encodeproject.org/files/ENCFF644GYE/@@download/ENCFF644GYE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/06/11/d3957b20-e8f7-450c-a2ec-3fc64724d507/ENCFF644GYE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF498SSW bam bam alignments ce11 ENCSR481ITX Control ChIP-seq /worm-donors/ENCDO839KWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/6418830/'], '@type': ['Target', 'Item'], 'name': 'ceh-63-celegans', 'label': 'ceh-63', '@id': '/targets/ceh-63-celegans/', 'title': 'ceh-63 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '819c1c38-ce55-49d7-99cc-8cbacc15f825', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF644GYE/, /files/ENCFF586MOL/ 1036280181 Kevin White, UChicago 924139bdc4b3102526598f03548149c7 https://www.encodeproject.org/files/ENCFF498SSW/@@download/ENCFF498SSW.bam released s3://encode-public/2018/06/11/950024cb-340c-455c-9f31-7d27ea454503/ENCFF498SSW.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF636WYF bigWig bigWig read-depth normalized signal ce11 ENCSR481ITX Control ChIP-seq /worm-donors/ENCDO839KWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/6418830/'], '@type': ['Target', 'Item'], 'name': 'ceh-63-celegans', 'label': 'ceh-63', '@id': '/targets/ceh-63-celegans/', 'title': 'ceh-63 (Caenorhabditis elegans)', 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/human-donors/ENCDO640RUC/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF095LYI/, /files/ENCFF551RVT/, /files/ENCFF679UVI/, /files/ENCFF461EOM/, /files/ENCFF613QFP/, /files/ENCFF532ONH/, /files/ENCFF479DSR/, /files/ENCFF110MCL/, /files/ENCFF235ATE/ 3491024622 ENCODE Processing Pipeline 3fc53e6906945d507743304ca718224f https://www.encodeproject.org/files/ENCFF164HTZ/@@download/ENCFF164HTZ.bam released s3://encode-public/2021/06/18/45426b50-ecc2-41e8-b8bc-5b1f5330c4ba/ENCFF164HTZ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF812VOG fastq fastq reads ENCSR151NEZ Control ChIP-seq /human-donors/ENCDO707TUE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 262471798 Bradley Bernstein, Broad 8e49cb72821e2e90a047b7aa498ced1b SRA:SRR14637056 https://www.encodeproject.org/files/ENCFF812VOG/@@download/ENCFF812VOG.fastq.gz Illumina NextSeq 500 released 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200-600 1 1_1, 1_2 76 /files/ENCFF388CLI/, /files/ENCFF049MVV/, /files/ENCFF643CGH/, /files/ENCFF446AHP/, /files/ENCFF404QDL/ 4357502206 ENCODE Processing Pipeline e17718ba7e6333e334bccdc4b780d74d https://www.encodeproject.org/files/ENCFF788BAC/@@download/ENCFF788BAC.bam released s3://encode-public/2019/06/19/f3b5b273-fa77-4e27-8718-ce5fb639efa9/ENCFF788BAC.bam ENCODE3 GRCh38 archived ENCFF793CRA bam bam unfiltered alignments hg19 ENCSR147KFH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2019-08-01 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF388CLI/, /files/ENCFF049MVV/, /files/ENCFF807MUK/, /files/ENCFF446AHP/, /files/ENCFF404QDL/ 4341937049 ENCODE Processing Pipeline 67b2ce51ca1db2750b82fc7fa9c5cf6f https://www.encodeproject.org/files/ENCFF793CRA/@@download/ENCFF793CRA.bam released s3://encode-public/2019/06/19/ebb39f83-4cf0-4251-b9a6-5a52746de27d/ENCFF793CRA.bam ENCODE3 hg19 archived ENCFF089MIN bam bam alignments GRCh38 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depth ENCFF382MIT fastq fastq reads ENCSR279VWA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 single-ended 1117013916 Yijun Ruan, JAX e5872c367d6e628386d8b77575913e86 SRA:SRR14104114 https://www.encodeproject.org/files/ENCFF382MIT/@@download/ENCFF382MIT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/08/07/7171424c-9e23-43d6-b254-fc6fb93e73a0/ENCFF382MIT.fastq.gz low read depth ENCFF666FGB bam bam alignments GRCh38 ENCSR279VWA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF382MIT/, /files/ENCFF110MCL/ 1052886911 ENCODE Processing Pipeline d2fe0337c43d5da67a747f0390ef4f41 https://www.encodeproject.org/files/ENCFF666FGB/@@download/ENCFF666FGB.bam released s3://encode-public/2020/11/13/d41bf83c-d7ec-4aa8-b0a1-97b6d8c894a6/ENCFF666FGB.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF865TVN bam bam unfiltered alignments GRCh38 ENCSR279VWA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF382MIT/, /files/ENCFF110MCL/ 1278382694 ENCODE Processing Pipeline b1a263a2b7339a72d8709e6cce127a47 https://www.encodeproject.org/files/ENCFF865TVN/@@download/ENCFF865TVN.bam released s3://encode-public/2020/11/13/6ce535f2-3fa4-4d8a-84ec-ef67eea60bad/ENCFF865TVN.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF770QIB fastq fastq reads ENCSR414IDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 single-ended 855324445 Yijun Ruan, JAX a51651312e0270b74f8d73fc94f45cd4 SRA:SRR14103178 https://www.encodeproject.org/files/ENCFF770QIB/@@download/ENCFF770QIB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/08/07/55f69a2a-8c97-4f5e-87fe-ed0efb352e93/ENCFF770QIB.fastq.gz low read depth ENCFF566KAN bam bam alignments GRCh38 ENCSR414IDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF906FLV/, /files/ENCFF770QIB/ 800661761 Yijun Ruan, JAX 587add4f9779f5265d9c559eb6e32ba1 https://www.encodeproject.org/files/ENCFF566KAN/@@download/ENCFF566KAN.bam released s3://encode-public/2020/08/07/a3415c4d-3416-4a3c-af08-6414f75a34b1/ENCFF566KAN.bam Lab custom GRCh38 archived low read depth ENCFF494DVB bam bam unfiltered alignments GRCh38 ENCSR414IDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF770QIB/ 986491473 ENCODE Processing Pipeline 814bce95d71bef168b8d1827e1cdd7ce https://www.encodeproject.org/files/ENCFF494DVB/@@download/ENCFF494DVB.bam released s3://encode-public/2020/11/13/95183556-3e81-4240-9b1c-901bb848cec0/ENCFF494DVB.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF467NDT bam bam alignments GRCh38 ENCSR414IDX Control ChIP-seq /human-donors/ENCDO000AAZ/ 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DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 1230580231 Bradley Bernstein, Broad 815e2e790e9496a422c612cd5548a035 SRA:SRR10049499 https://www.encodeproject.org/files/ENCFF106ANG/@@download/ENCFF106ANG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/1641cc41-494a-421b-a468-5a132cce8cdb/ENCFF106ANG.fastq.gz ENCFF086ZTZ bam bam unfiltered alignments hg19 ENCSR156WTZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF187NRN/, /files/ENCFF060ABF/, /files/ENCFF106ANG/, /files/ENCFF432KCC/ 5128767867 ENCODE Processing Pipeline 4000dee6984f8f2bb59fe6a6c19c0bf8 https://www.encodeproject.org/files/ENCFF086ZTZ/@@download/ENCFF086ZTZ.bam released s3://encode-public/2019/06/12/14ade057-4b5b-4d86-b513-62cd19cf8431/ENCFF086ZTZ.bam ENCODE3 hg19 archived ENCFF970JNP bam bam alignments hg19 ENCSR156WTZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF187NRN/, /files/ENCFF060ABF/, /files/ENCFF106ANG/, /files/ENCFF432KCC/ 4239294687 ENCODE Processing Pipeline 6242efc24638585f2a127868dcb2f990 https://www.encodeproject.org/files/ENCFF970JNP/@@download/ENCFF970JNP.bam released s3://encode-public/2019/06/12/24d47085-29dc-41b0-a347-52d164262b18/ENCFF970JNP.bam ENCODE3 hg19 archived ENCFF801OTV bam bam alignments GRCh38 ENCSR156WTZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF187NRN/, /files/ENCFF060ABF/, /files/ENCFF106ANG/, /files/ENCFF432KCC/ 4245327569 ENCODE Processing Pipeline 63ac84945c14bb86e8f4772a0b46e888 https://www.encodeproject.org/files/ENCFF801OTV/@@download/ENCFF801OTV.bam released s3://encode-public/2019/06/12/1cbaa94e-15a2-4508-9902-49981813ace2/ENCFF801OTV.bam ENCODE3 GRCh38 archived ENCFF752OHQ bam bam unfiltered alignments GRCh38 ENCSR156WTZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF187NRN/, /files/ENCFF060ABF/, /files/ENCFF106ANG/, /files/ENCFF432KCC/ 5141973065 ENCODE Processing Pipeline 54ae68ed968593b6e0eb36b8670fd910 https://www.encodeproject.org/files/ENCFF752OHQ/@@download/ENCFF752OHQ.bam released s3://encode-public/2019/06/12/1e19399b-bcc1-4589-8e98-f14d3da2fa18/ENCFF752OHQ.bam ENCODE3 GRCh38 archived ENCFF419VPZ bam bam unfiltered alignments GRCh38 ENCSR156WTZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF060ABF/, /files/ENCFF432KCC/, /files/ENCFF110MCL/, /files/ENCFF106ANG/, /files/ENCFF187NRN/ 5098596156 ENCODE Processing Pipeline b1181a8176f930afc7d4d43b7e433ff1 https://www.encodeproject.org/files/ENCFF419VPZ/@@download/ENCFF419VPZ.bam released s3://encode-public/2020/09/20/1b6762e8-dae2-48e6-98c0-134f087c7cc9/ENCFF419VPZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF438QTI bam bam alignments GRCh38 ENCSR156WTZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF060ABF/, /files/ENCFF432KCC/, /files/ENCFF110MCL/, /files/ENCFF106ANG/, /files/ENCFF187NRN/ 4232131912 ENCODE Processing Pipeline 0f6cecd236217519d64ab88e0870c52f https://www.encodeproject.org/files/ENCFF438QTI/@@download/ENCFF438QTI.bam released s3://encode-public/2020/09/20/a708d24d-0b13-4325-80c7-3fbbf42a1768/ENCFF438QTI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF125RJP fastq fastq reads ENCSR283FJI Control ChIP-seq /worm-donors/ENCDO199MIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180727/'], '@type': ['Target', 'Item'], 'name': 'ham-2-celegans', 'label': 'ham-2', '@id': '/targets/ham-2-celegans/', 'title': 'ham-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4972e7f6-f23f-4b6e-b8b6-915e4e5b61c8', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 6 6_1 50 single-ended 922566257 Kevin White, UChicago 85a31ad2c54fd01d3f0d5075c9765793 https://www.encodeproject.org/files/ENCFF125RJP/@@download/ENCFF125RJP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/8fd81cc1-fc57-4c8c-aab7-17171c5b1498/ENCFF125RJP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF166DQL bam bam alignments ce11 ENCSR283FJI Control ChIP-seq /worm-donors/ENCDO199MIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180727/'], '@type': ['Target', 'Item'], 'name': 'ham-2-celegans', 'label': 'ham-2', '@id': '/targets/ham-2-celegans/', 'title': 'ham-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4972e7f6-f23f-4b6e-b8b6-915e4e5b61c8', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 6 6_1 50 /files/ENCFF125RJP/, /files/ENCFF586MOL/ 1207000208 Kevin White, UChicago 77b027216180ced03316a6386ea9f674 https://www.encodeproject.org/files/ENCFF166DQL/@@download/ENCFF166DQL.bam released s3://encode-public/2018/05/31/62323b02-3025-4ad5-ba80-1a6ada660a52/ENCFF166DQL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF287WZZ bigWig bigWig signal of unique reads ce11 ENCSR283FJI Control ChIP-seq /worm-donors/ENCDO199MIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180727/'], '@type': ['Target', 'Item'], 'name': 'ham-2-celegans', 'label': 'ham-2', '@id': '/targets/ham-2-celegans/', 'title': 'ham-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4972e7f6-f23f-4b6e-b8b6-915e4e5b61c8', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 6 6_1 /files/ENCFF166DQL/ 10012624 Kevin White, UChicago 13f4f550587156f497f49b023aa115be https://www.encodeproject.org/files/ENCFF287WZZ/@@download/ENCFF287WZZ.bigWig released s3://encode-public/2018/05/31/c022d682-2063-498a-b445-fd97c8bda8b6/ENCFF287WZZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF659YEX bigWig bigWig read-depth normalized signal ce11 ENCSR283FJI Control ChIP-seq /worm-donors/ENCDO199MIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': 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released ENCFF250QLP fastq fastq reads ENCSR968MKZ Control ChIP-seq /human-donors/ENCDO865EMM/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 395969196 Bradley Bernstein, Broad 81384f3a44bd463786fce383c31a37aa SRA:SRR16814136 https://www.encodeproject.org/files/ENCFF250QLP/@@download/ENCFF250QLP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/1b852478-88b9-440b-ae85-1e30367ee5cc/ENCFF250QLP.fastq.gz ENCFF361BQU fastq fastq reads ENCSR968MKZ Control ChIP-seq /human-donors/ENCDO865EMM/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 400347304 Bradley Bernstein, Broad 6110effddc3be439f73b275013f7a8c7 SRA:SRR16814137 https://www.encodeproject.org/files/ENCFF361BQU/@@download/ENCFF361BQU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/b70ef727-02ec-440e-a858-95876b5b3167/ENCFF361BQU.fastq.gz ENCFF016VJT fastq fastq reads 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https://www.encodeproject.org/files/ENCFF438SRY/@@download/ENCFF438SRY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/a77b650f-1a89-49dd-9536-48b9c3c957d3/ENCFF438SRY.fastq.gz ENCFF441FPO bam bam unfiltered alignments GRCh38 ENCSR618UQQ Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF974IXG/, /files/ENCFF450WVJ/, /files/ENCFF944PIE/, /files/ENCFF386XFN/, /files/ENCFF438SRY/, /files/ENCFF134QTD/, /files/ENCFF764SLS/, /files/ENCFF950DIA/ 3072766960 ENCODE Processing Pipeline 37c56b81fdb49e9d5241349d5e434dc6 https://www.encodeproject.org/files/ENCFF441FPO/@@download/ENCFF441FPO.bam released s3://encode-public/2021/04/09/e6634de8-16d0-40e6-8265-e33227b6f9f8/ENCFF441FPO.bam ENCODE4 v1.8.0 GRCh38 released ENCFF214WUY bam bam alignments GRCh38 ENCSR618UQQ Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF974IXG/, /files/ENCFF450WVJ/, /files/ENCFF944PIE/, /files/ENCFF386XFN/, /files/ENCFF438SRY/, /files/ENCFF134QTD/, /files/ENCFF764SLS/, /files/ENCFF950DIA/ 2610969368 ENCODE Processing Pipeline 5844cb87609ab58e1b44abe9ce056ea5 https://www.encodeproject.org/files/ENCFF214WUY/@@download/ENCFF214WUY.bam released s3://encode-public/2021/04/09/2489ee73-a0a2-4326-8c38-47341322fc2d/ENCFF214WUY.bam ENCODE4 v1.8.0 GRCh38 released ENCFF701YVP fastq fastq reads ENCSR421QOH Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 single-ended 2093870569 Richard Myers, HAIB 8dc95843600e52833338790c7cb17daf https://www.encodeproject.org/files/ENCFF701YVP/@@download/ENCFF701YVP.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/22/2f188b46-c8f8-43e8-9e1e-2203fc0b1083/ENCFF701YVP.fastq.gz ENCFF711IZS bam bam alignments GRCh38 ENCSR421QOH Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF701YVP/, /files/ENCFF110MCL/ 1279484767 ENCODE Processing Pipeline 0c5b8c4aeef9313c41cd820bdff41e58 https://www.encodeproject.org/files/ENCFF711IZS/@@download/ENCFF711IZS.bam released s3://encode-public/2021/12/21/ed5b916e-92d2-42b4-b627-eebe932a5637/ENCFF711IZS.bam ENCODE4 v1.8.0 GRCh38 released ENCFF429ELM bam bam unfiltered alignments GRCh38 ENCSR421QOH Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF701YVP/, /files/ENCFF110MCL/ 2186741408 ENCODE Processing Pipeline fc2025f623b7d3184f9c433af655db62 https://www.encodeproject.org/files/ENCFF429ELM/@@download/ENCFF429ELM.bam released s3://encode-public/2021/12/21/8073c4f8-0fbd-4826-8736-38e3c9936a6b/ENCFF429ELM.bam ENCODE4 v1.8.0 GRCh38 released ENCFF103OOC fastq fastq reads ENCSR859ZNT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 single-ended 1980355173 Richard Myers, HAIB 4b5fb040cb8093c0ac92749bf6dc0e7a https://www.encodeproject.org/files/ENCFF103OOC/@@download/ENCFF103OOC.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/22/dfa5f3d4-63b4-4cdb-a74c-e9b989e98eff/ENCFF103OOC.fastq.gz ENCFF813MPI bam bam unfiltered alignments GRCh38 ENCSR859ZNT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF103OOC/, /files/ENCFF110MCL/ 2048148032 ENCODE Processing Pipeline 07e0b6a256a3f645b1ec456ffa5ede7c https://www.encodeproject.org/files/ENCFF813MPI/@@download/ENCFF813MPI.bam released s3://encode-public/2021/12/21/18653a03-18ef-4615-af3d-67af9b7f46c6/ENCFF813MPI.bam ENCODE4 v1.8.0 GRCh38 released ENCFF441EKA bam bam alignments GRCh38 ENCSR859ZNT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF103OOC/, /files/ENCFF110MCL/ 1204299103 ENCODE Processing Pipeline 9442f76cd2e2190c2277e094bdb0d232 https://www.encodeproject.org/files/ENCFF441EKA/@@download/ENCFF441EKA.bam released s3://encode-public/2021/12/21/47743332-281b-4073-91a5-7974ef6254ad/ENCFF441EKA.bam ENCODE4 v1.8.0 GRCh38 released ENCFF195DUA fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 440533931 Bradley Bernstein, Broad b26e0a9bdded64c8d0dda4f0d756ceab SRA:SRR16808541 https://www.encodeproject.org/files/ENCFF195DUA/@@download/ENCFF195DUA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/fce7bda1-14e6-468b-bc96-709fd02f70e9/ENCFF195DUA.fastq.gz ENCFF473UAC fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 445403751 Bradley Bernstein, Broad 6f6ddb0818450a86719ed54ad52d58e8 SRA:SRR16808542 https://www.encodeproject.org/files/ENCFF473UAC/@@download/ENCFF473UAC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/3bc2f5c4-f3a2-4c11-9152-ff506a8d630a/ENCFF473UAC.fastq.gz ENCFF797WDQ fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 444740289 Bradley Bernstein, Broad c04cd5f2eda1688849e9e51cea4f61c2 SRA:SRR16808543 https://www.encodeproject.org/files/ENCFF797WDQ/@@download/ENCFF797WDQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/629b72bb-7944-4844-820a-b1345206b839/ENCFF797WDQ.fastq.gz ENCFF782BEG fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 450172839 Bradley Bernstein, Broad 8c2c185e8c5fa55a4b467bb6dff74f0f SRA:SRR16808544 https://www.encodeproject.org/files/ENCFF782BEG/@@download/ENCFF782BEG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/7c00f55c-30fc-4292-98ee-6a870601256c/ENCFF782BEG.fastq.gz ENCFF903CDZ fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 446760846 Bradley Bernstein, Broad 56bebef709f60c15aa20bc561e778002 SRA:SRR16808545 https://www.encodeproject.org/files/ENCFF903CDZ/@@download/ENCFF903CDZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/74287652-77e1-4232-87de-ecc0c35cda20/ENCFF903CDZ.fastq.gz ENCFF849HZS fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 451038728 Bradley Bernstein, Broad 158b8f50988849691a5558338db75de0 SRA:SRR16808546 https://www.encodeproject.org/files/ENCFF849HZS/@@download/ENCFF849HZS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/863cf3d2-3b38-4367-9750-fc96468c8b59/ENCFF849HZS.fastq.gz ENCFF729QOO fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 452262389 Bradley Bernstein, Broad d3a62cee8f8d02cc210454af53c77ae8 SRA:SRR16808547 https://www.encodeproject.org/files/ENCFF729QOO/@@download/ENCFF729QOO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/2041b349-7f64-4795-9eec-9cd1d7c9c15c/ENCFF729QOO.fastq.gz ENCFF976TBF fastq fastq reads ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 450971742 Bradley Bernstein, Broad fe40583bb8734ed760872a67219cfa4c SRA:SRR16808548 https://www.encodeproject.org/files/ENCFF976TBF/@@download/ENCFF976TBF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/bc756d39-7edb-42d8-bf6c-c36c6e14625d/ENCFF976TBF.fastq.gz ENCFF490CDT bam bam unfiltered alignments GRCh38 ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF976TBF/, /files/ENCFF729QOO/, /files/ENCFF473UAC/, /files/ENCFF849HZS/, /files/ENCFF797WDQ/, /files/ENCFF110MCL/, /files/ENCFF903CDZ/, /files/ENCFF195DUA/, /files/ENCFF782BEG/ 3549887835 ENCODE Processing Pipeline 48169611fd3b2cb6379b758d4e568d78 https://www.encodeproject.org/files/ENCFF490CDT/@@download/ENCFF490CDT.bam released s3://encode-public/2021/09/15/46370dd8-f9cc-47bc-833b-a560f3d4c995/ENCFF490CDT.bam ENCODE4 v1.8.0 GRCh38 released ENCFF428GJU bam bam alignments GRCh38 ENCSR237ZMF Control ChIP-seq /human-donors/ENCDO637GUS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF976TBF/, /files/ENCFF729QOO/, /files/ENCFF473UAC/, /files/ENCFF849HZS/, /files/ENCFF797WDQ/, /files/ENCFF110MCL/, /files/ENCFF903CDZ/, /files/ENCFF195DUA/, /files/ENCFF782BEG/ 2990710471 ENCODE Processing Pipeline 6da22d5ef71eb06cf539f1fbfb9d3dfa https://www.encodeproject.org/files/ENCFF428GJU/@@download/ENCFF428GJU.bam released s3://encode-public/2021/09/15/a47c1f37-9dc7-4bb1-9fbe-eb33595e6d4e/ENCFF428GJU.bam ENCODE4 v1.8.0 GRCh38 released ENCFF627EZH fastq fastq reads ENCSR792WBF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-04-01 ENCODE sonication (generic) 1 1_1 100 single-ended 1861355878 Richard Myers, HAIB 7859e92d42b03bb068deb07cf5899f4c https://www.encodeproject.org/files/ENCFF627EZH/@@download/ENCFF627EZH.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2022/01/04/536dbb59-8a0e-4204-b0a7-a7144dc6dd56/ENCFF627EZH.fastq.gz low read depth ENCFF435JKS bam bam unfiltered alignments GRCh38 ENCSR792WBF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-04-01 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF627EZH/ 1931415808 ENCODE Processing Pipeline 98f00cd443e1c48d25d59f8f312241a1 https://www.encodeproject.org/files/ENCFF435JKS/@@download/ENCFF435JKS.bam released s3://encode-public/2022/03/29/03d26a45-71e5-47c2-afd5-ff175c86e438/ENCFF435JKS.bam ENCODE4 v1.8.0 GRCh38 released low read depth ENCFF783HKD bam bam alignments GRCh38 ENCSR792WBF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-04-01 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF627EZH/ 1058749697 ENCODE Processing Pipeline 79d37573d2248cdd1fa15b3c56ce3843 https://www.encodeproject.org/files/ENCFF783HKD/@@download/ENCFF783HKD.bam released s3://encode-public/2022/03/29/e1dbe8cb-c265-40b1-8dc7-372ca99558d9/ENCFF783HKD.bam ENCODE4 v1.8.0 GRCh38 released low read depth ENCFF665KAL fastq fastq reads ENCSR306YLG Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 760763259 Bradley Bernstein, Broad 29b9abe62eb2dc95a495fe50d0c80b5f SRA:SRR13803804 https://www.encodeproject.org/files/ENCFF665KAL/@@download/ENCFF665KAL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/de1fee2c-af06-4ee4-babd-675fb47feae1/ENCFF665KAL.fastq.gz mild to moderate bottlenecking ENCFF154CVX fastq fastq reads ENCSR306YLG Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 784755450 Bradley Bernstein, Broad 902f66c0e358791b9d13f00fcbc3ef64 SRA:SRR13803805 https://www.encodeproject.org/files/ENCFF154CVX/@@download/ENCFF154CVX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/a95610ac-d07f-4d2b-b9a1-41dc3be6896c/ENCFF154CVX.fastq.gz mild to moderate bottlenecking ENCFF358WWR fastq fastq reads ENCSR306YLG Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1051572706 Bradley Bernstein, Broad 78467bda5d42ac5546457da96ff33eb7 SRA:SRR13803806 https://www.encodeproject.org/files/ENCFF358WWR/@@download/ENCFF358WWR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/5dac7241-24e4-4b2f-87d0-022a8ea573d4/ENCFF358WWR.fastq.gz mild to moderate bottlenecking ENCFF553VWH fastq fastq reads ENCSR306YLG Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1027689794 Bradley Bernstein, Broad 3dadc95e2004653005c7150f6d16bc99 SRA:SRR13803807 https://www.encodeproject.org/files/ENCFF553VWH/@@download/ENCFF553VWH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/60e25fe5-6631-4910-b19f-9518b64d442e/ENCFF553VWH.fastq.gz mild to moderate bottlenecking ENCFF504QVL bam bam unfiltered alignments GRCh38 ENCSR306YLG Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF553VWH/, /files/ENCFF665KAL/, /files/ENCFF358WWR/, /files/ENCFF154CVX/ 3425396096 ENCODE Processing Pipeline 370797c9a3d490ddab7557f97a63c4ac https://www.encodeproject.org/files/ENCFF504QVL/@@download/ENCFF504QVL.bam released s3://encode-public/2020/07/19/9e9e3b31-d489-4dd9-874b-d3996f508080/ENCFF504QVL.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF384NZR bam bam alignments GRCh38 ENCSR306YLG Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF553VWH/, /files/ENCFF665KAL/, /files/ENCFF358WWR/, /files/ENCFF154CVX/ 2619246108 ENCODE Processing Pipeline 9debf71776e8d085188d044ec1a80356 https://www.encodeproject.org/files/ENCFF384NZR/@@download/ENCFF384NZR.bam released s3://encode-public/2020/07/19/ae3fd0ac-b336-49ae-8b78-578a508a19d2/ENCFF384NZR.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF994YJV fastq fastq reads ENCSR413QNG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1112'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/63977/'], '@type': ['Target', 'Item'], 'name': 'PRDM15-human', 'label': 'PRDM15', '@id': '/targets/PRDM15-human/', 'title': 'PRDM15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f055571b-35dc-42c2-b04f-7f0429bba36e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF788PJT/ 2935278644 Michael Snyder, Stanford bfb5ffd55b19b3e528983787697a178c https://www.encodeproject.org/files/ENCFF994YJV/@@download/ENCFF994YJV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/aa73d2bd-7412-4d2c-a8c2-74615ebe934c/ENCFF994YJV.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF788PJT fastq fastq reads ENCSR413QNG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1112'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/63977/'], '@type': ['Target', 'Item'], 'name': 'PRDM15-human', 'label': 'PRDM15', '@id': '/targets/PRDM15-human/', 'title': 'PRDM15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f055571b-35dc-42c2-b04f-7f0429bba36e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF994YJV/ 3321732957 Michael Snyder, Stanford 990c48d5d697148cddd48300affa2027 https://www.encodeproject.org/files/ENCFF788PJT/@@download/ENCFF788PJT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/0ac754cd-54da-4600-b8eb-57335b761e98/ENCFF788PJT.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF711QES bam bam unfiltered alignments GRCh38 ENCSR413QNG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1112'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/63977/'], '@type': ['Target', 'Item'], 'name': 'PRDM15-human', 'label': 'PRDM15', '@id': '/targets/PRDM15-human/', 'title': 'PRDM15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f055571b-35dc-42c2-b04f-7f0429bba36e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF994YJV/, /files/ENCFF788PJT/ 5590028165 ENCODE Processing Pipeline 09406945891388045d2e936408521a16 https://www.encodeproject.org/files/ENCFF711QES/@@download/ENCFF711QES.bam released s3://encode-public/2020/04/20/bf5db3a8-b064-4a2b-8879-9771cbf9da18/ENCFF711QES.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF516IBY bam bam alignments GRCh38 ENCSR413QNG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1112'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/63977/'], '@type': ['Target', 'Item'], 'name': 'PRDM15-human', 'label': 'PRDM15', '@id': '/targets/PRDM15-human/', 'title': 'PRDM15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f055571b-35dc-42c2-b04f-7f0429bba36e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF994YJV/, /files/ENCFF788PJT/ 3946463189 ENCODE Processing Pipeline 2c9ea871c493e4ccc64dda177cea8093 https://www.encodeproject.org/files/ENCFF516IBY/@@download/ENCFF516IBY.bam released s3://encode-public/2020/04/20/94bf1d3e-ebcf-4e57-a5a3-91ce7772af84/ENCFF516IBY.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF524XCT bam bam alignments ce11 ENCSR113XIS Control ChIP-seq /worm-donors/ENCDO626TST/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177590/'], '@type': ['Target', 'Item'], 'name': 'ceh-19-celegans', 'label': 'ceh-19', '@id': '/targets/ceh-19-celegans/', 'title': 'ceh-19 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41875582-859a-485e-90ca-0880cc76af1c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 2, 3 2_1, 3_1 50 /files/ENCFF292EVA/, /files/ENCFF744IGM/, /files/ENCFF586MOL/ 1333016901 Kevin White, UChicago e4c34360cf4c15402d3234b9cc61b19d https://www.encodeproject.org/files/ENCFF524XCT/@@download/ENCFF524XCT.bam released s3://encode-public/2018/02/27/ed2dbce9-e421-41ab-89d0-681de49ea5f4/ENCFF524XCT.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF292EVA fastq fastq reads ENCSR113XIS Control ChIP-seq /worm-donors/ENCDO626TST/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177590/'], '@type': ['Target', 'Item'], 'name': 'ceh-19-celegans', 'label': 'ceh-19', '@id': '/targets/ceh-19-celegans/', 'title': 'ceh-19 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41875582-859a-485e-90ca-0880cc76af1c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 467767731 Kevin White, UChicago e86d8a1d7a8ac5c5ea0f71a106ceb3ca https://www.encodeproject.org/files/ENCFF292EVA/@@download/ENCFF292EVA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/201bd1a4-a900-4abd-b08c-ad0be6262123/ENCFF292EVA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF744IGM fastq fastq reads ENCSR113XIS Control ChIP-seq /worm-donors/ENCDO626TST/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177590/'], '@type': ['Target', 'Item'], 'name': 'ceh-19-celegans', 'label': 'ceh-19', '@id': '/targets/ceh-19-celegans/', 'title': 'ceh-19 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41875582-859a-485e-90ca-0880cc76af1c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3 3_1 50 single-ended 552477172 Kevin White, UChicago e0d72cc7cfa5f67674c8166f27b9128d https://www.encodeproject.org/files/ENCFF744IGM/@@download/ENCFF744IGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/3d3cc646-07b9-4cdb-b651-9d7b82e3df26/ENCFF744IGM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF827SSA bigWig bigWig read-depth normalized signal ce11 ENCSR113XIS Control ChIP-seq /worm-donors/ENCDO626TST/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177590/'], '@type': ['Target', 'Item'], 'name': 'ceh-19-celegans', 'label': 'ceh-19', '@id': '/targets/ceh-19-celegans/', 'title': 'ceh-19 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41875582-859a-485e-90ca-0880cc76af1c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 2, 3 2_1, 3_1 /files/ENCFF524XCT/ 9943526 Kevin White, UChicago 3b855dba808e55232aa0c6d6e69118f9 https://www.encodeproject.org/files/ENCFF827SSA/@@download/ENCFF827SSA.bigWig released s3://encode-public/2018/03/01/9f2f17c4-a446-45a3-8bf6-30cfcdcb93fe/ENCFF827SSA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF749PPZ bigWig bigWig signal of unique reads ce11 ENCSR113XIS Control ChIP-seq /worm-donors/ENCDO626TST/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177590/'], '@type': ['Target', 'Item'], 'name': 'ceh-19-celegans', 'label': 'ceh-19', '@id': '/targets/ceh-19-celegans/', 'title': 'ceh-19 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41875582-859a-485e-90ca-0880cc76af1c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 2, 3 2_1, 3_1 /files/ENCFF524XCT/ 10017848 Kevin White, UChicago 58177a5ba8b581b3e0867d703538043b https://www.encodeproject.org/files/ENCFF749PPZ/@@download/ENCFF749PPZ.bigWig released s3://encode-public/2018/03/01/7241e9ad-c98c-40fd-b17f-21bfafcf50e3/ENCFF749PPZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF042HMR fastq fastq reads ENCSR916PCV Control ChIP-seq /fly-donors/ENCDO866FOS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43570/'], '@type': ['Target', 'Item'], 'name': 'Sry-β-dmelanogaster', 'label': 'Sry-β', '@id': '/targets/Sry-%CE%B2-dmelanogaster/', 'title': 'Sry-β (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd329537e-08f0-4e36-b30c-1e332b9149d1', 'status': 'released'} dm3 3R 25865453 25866753 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 614769568 Kevin White, UChicago 55c2d8c73d74e009ff301e42a055457d https://www.encodeproject.org/files/ENCFF042HMR/@@download/ENCFF042HMR.fastq.gz Illumina HiSeq 4000 /files/ENCFF828CYL/ released s3://encode-public/2018/02/01/d42fc2ac-0758-40ae-ab5c-a0ada91c725c/ENCFF042HMR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF069LJN bam bam alignments dm6 ENCSR916PCV Control ChIP-seq /fly-donors/ENCDO866FOS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43570/'], '@type': ['Target', 'Item'], 'name': 'Sry-β-dmelanogaster', 'label': 'Sry-β', '@id': '/targets/Sry-%CE%B2-dmelanogaster/', 'title': 'Sry-β (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd329537e-08f0-4e36-b30c-1e332b9149d1', 'status': 'released'} dm3 3R 25865453 25866753 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF042HMR/, /files/ENCFF479RCH/ 820816381 Kevin White, UChicago 29bc7b871029e7e9ebd3e6ba6e6ed3cf https://www.encodeproject.org/files/ENCFF069LJN/@@download/ENCFF069LJN.bam released s3://encode-public/2018/02/02/bede2d22-6da8-4281-a287-4eb4b99ede10/ENCFF069LJN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF873NKC bigWig bigWig signal of unique reads dm6 ENCSR916PCV Control ChIP-seq /fly-donors/ENCDO866FOS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43570/'], '@type': ['Target', 'Item'], 'name': 'Sry-β-dmelanogaster', 'label': 'Sry-β', '@id': '/targets/Sry-%CE%B2-dmelanogaster/', 'title': 'Sry-β (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd329537e-08f0-4e36-b30c-1e332b9149d1', 'status': 'released'} dm3 3R 25865453 25866753 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF069LJN/ 17500524 Kevin White, UChicago 4ac03603a044da8c5189a9884e18dff0 https://www.encodeproject.org/files/ENCFF873NKC/@@download/ENCFF873NKC.bigWig released s3://encode-public/2018/02/02/2564d1e5-3213-4161-88f6-39d90aee323d/ENCFF873NKC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF402BUT bigWig bigWig read-depth normalized signal dm6 ENCSR916PCV Control ChIP-seq /fly-donors/ENCDO866FOS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43570/'], '@type': ['Target', 'Item'], 'name': 'Sry-β-dmelanogaster', 'label': 'Sry-β', '@id': '/targets/Sry-%CE%B2-dmelanogaster/', 'title': 'Sry-β (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd329537e-08f0-4e36-b30c-1e332b9149d1', 'status': 'released'} dm3 3R 25865453 25866753 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF069LJN/ 17515290 Kevin White, UChicago 1b200d9cb7336164a2eda2291c664a84 https://www.encodeproject.org/files/ENCFF402BUT/@@download/ENCFF402BUT.bigWig released s3://encode-public/2018/02/02/2dbb3aad-6a01-4506-a597-b195044d4cc0/ENCFF402BUT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF014WLX fastq fastq reads ENCSR402PIT Control ChIP-seq /fly-donors/ENCDO666HME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38713/'], '@type': ['Target', 'Item'], 'name': 'CG13296-dmelanogaster', 'label': 'CG13296', '@id': '/targets/CG13296-dmelanogaster/', 'title': 'CG13296 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'ce5bc986-37da-48fe-9375-2969b8e28e67', 'status': 'released'} dm3 3L 6144963 6165894 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 767983884 Kevin White, UChicago 46ca5abecb553c51132483f17fc347b6 https://www.encodeproject.org/files/ENCFF014WLX/@@download/ENCFF014WLX.fastq.gz Illumina HiSeq 4000 /files/ENCFF002NIH/ released s3://encode-public/2018/02/01/cf122fa8-7327-4e9e-b872-0aee8f4f2947/ENCFF014WLX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF544KYP bam bam alignments dm6 ENCSR402PIT Control ChIP-seq /fly-donors/ENCDO666HME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38713/'], '@type': ['Target', 'Item'], 'name': 'CG13296-dmelanogaster', 'label': 'CG13296', '@id': '/targets/CG13296-dmelanogaster/', 'title': 'CG13296 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'ce5bc986-37da-48fe-9375-2969b8e28e67', 'status': 'released'} dm3 3L 6144963 6165894 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF014WLX/, /files/ENCFF479RCH/ 1024980113 Kevin White, UChicago 90d9a3c7640d88fc0cc5b5174ad6427f https://www.encodeproject.org/files/ENCFF544KYP/@@download/ENCFF544KYP.bam released s3://encode-public/2018/02/02/a68edd11-9125-49f8-b4e7-d5c26e43a3e7/ENCFF544KYP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF393NQX bigWig bigWig signal of unique reads dm6 ENCSR402PIT Control ChIP-seq /fly-donors/ENCDO666HME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38713/'], '@type': ['Target', 'Item'], 'name': 'CG13296-dmelanogaster', 'label': 'CG13296', '@id': '/targets/CG13296-dmelanogaster/', 'title': 'CG13296 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'ce5bc986-37da-48fe-9375-2969b8e28e67', 'status': 'released'} dm3 3L 6144963 6165894 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF544KYP/ 17613665 Kevin White, UChicago f43074e79bca22a13dfef993a0ffeff5 https://www.encodeproject.org/files/ENCFF393NQX/@@download/ENCFF393NQX.bigWig released s3://encode-public/2018/02/02/0050dda9-eb92-4427-8604-798616b794e6/ENCFF393NQX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF567NBF bigWig bigWig read-depth normalized signal dm6 ENCSR402PIT Control ChIP-seq /fly-donors/ENCDO666HME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38713/'], '@type': ['Target', 'Item'], 'name': 'CG13296-dmelanogaster', 'label': 'CG13296', '@id': '/targets/CG13296-dmelanogaster/', 'title': 'CG13296 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'ce5bc986-37da-48fe-9375-2969b8e28e67', 'status': 'released'} dm3 3L 6144963 6165894 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF544KYP/ 17631546 Kevin White, UChicago 16d5000ddfc4babe393e795518279e7a https://www.encodeproject.org/files/ENCFF567NBF/@@download/ENCFF567NBF.bigWig released s3://encode-public/2018/02/02/96dd79fa-dc31-41da-b81c-ebf47afe11c2/ENCFF567NBF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF942ZTE fastq fastq reads ENCSR925PLG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1778'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5017/'], '@type': ['Target', 'Item'], 'name': 'OVOL1-human', 'label': 'OVOL1', '@id': '/targets/OVOL1-human/', 'title': 'OVOL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35bbee27-ef72-4ccc-ab88-d81772f61073', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF246WMZ/ 2131611209 Michael Snyder, Stanford 6d0b867f1eda9fd7120cfc9b131f1dff SRA:SRR14106982 https://www.encodeproject.org/files/ENCFF942ZTE/@@download/ENCFF942ZTE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/a7bf111c-8e6c-4ab6-8cf6-67f00bfb5f97/ENCFF942ZTE.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF246WMZ fastq fastq reads ENCSR925PLG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1778'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5017/'], '@type': ['Target', 'Item'], 'name': 'OVOL1-human', 'label': 'OVOL1', '@id': '/targets/OVOL1-human/', 'title': 'OVOL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35bbee27-ef72-4ccc-ab88-d81772f61073', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF942ZTE/ 2310860935 Michael Snyder, Stanford e3676bcf5f7422b0d31132fa47271ec5 SRA:SRR14106982 https://www.encodeproject.org/files/ENCFF246WMZ/@@download/ENCFF246WMZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/d0bde53f-50f2-4d42-8b36-ee03faf9ff69/ENCFF246WMZ.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF774CFU bam bam unfiltered alignments GRCh38 ENCSR925PLG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1778'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5017/'], '@type': ['Target', 'Item'], 'name': 'OVOL1-human', 'label': 'OVOL1', '@id': '/targets/OVOL1-human/', 'title': 'OVOL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35bbee27-ef72-4ccc-ab88-d81772f61073', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF942ZTE/, /files/ENCFF246WMZ/ 3942208467 ENCODE Processing Pipeline 49f5ca3b742a066f4a86e6f263e47902 https://www.encodeproject.org/files/ENCFF774CFU/@@download/ENCFF774CFU.bam released s3://encode-public/2020/04/20/e9aa2e28-0b03-4011-a152-f36c53ec1349/ENCFF774CFU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF207XUB bam bam alignments GRCh38 ENCSR925PLG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1778'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5017/'], '@type': ['Target', 'Item'], 'name': 'OVOL1-human', 'label': 'OVOL1', '@id': '/targets/OVOL1-human/', 'title': 'OVOL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35bbee27-ef72-4ccc-ab88-d81772f61073', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF942ZTE/, /files/ENCFF246WMZ/ 2222157030 ENCODE Processing Pipeline 7e29d81012c66747451a59489151b6f3 https://www.encodeproject.org/files/ENCFF207XUB/@@download/ENCFF207XUB.bam released s3://encode-public/2020/04/20/4763b86c-7fe3-41f7-9ca6-b0bf95a5f757/ENCFF207XUB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF741IXH fastq fastq reads ENCSR303RFP Control ChIP-seq /fly-donors/ENCDO624VZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42638/'], '@type': ['Target', 'Item'], 'name': 'CG34376-dmelanogaster', 'label': 'CG34376', '@id': '/targets/CG34376-dmelanogaster/', 'title': 'CG34376 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b9887d7f-50a8-43ac-b21b-5bcdfa8ddd67', 'status': 'released'} dm3 3R 18270330 18293284 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1052972268 Kevin White, UChicago 5aa7b9f2557baf07ebbd8bd2c5b76a8c https://www.encodeproject.org/files/ENCFF741IXH/@@download/ENCFF741IXH.fastq.gz Illumina HiSeq 4000 /files/ENCFF207NSJ/ released s3://encode-public/2018/02/01/a55a1de9-3651-4321-9824-0ef0f8cbcc86/ENCFF741IXH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF086BBN bam bam alignments dm6 ENCSR303RFP Control ChIP-seq /fly-donors/ENCDO624VZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42638/'], '@type': ['Target', 'Item'], 'name': 'CG34376-dmelanogaster', 'label': 'CG34376', '@id': '/targets/CG34376-dmelanogaster/', 'title': 'CG34376 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b9887d7f-50a8-43ac-b21b-5bcdfa8ddd67', 'status': 'released'} dm3 3R 18270330 18293284 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF741IXH/, /files/ENCFF479RCH/ 936119822 Kevin White, UChicago 71b1c1806253e88978fe52f42bf00674 https://www.encodeproject.org/files/ENCFF086BBN/@@download/ENCFF086BBN.bam released s3://encode-public/2018/02/03/e43141ed-0c8e-4bc8-9d09-86c15dac8045/ENCFF086BBN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF246WEH bigWig bigWig read-depth normalized signal dm6 ENCSR303RFP Control ChIP-seq /fly-donors/ENCDO624VZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42638/'], '@type': ['Target', 'Item'], 'name': 'CG34376-dmelanogaster', 'label': 'CG34376', '@id': '/targets/CG34376-dmelanogaster/', 'title': 'CG34376 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b9887d7f-50a8-43ac-b21b-5bcdfa8ddd67', 'status': 'released'} dm3 3R 18270330 18293284 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF086BBN/ 3225577 Kevin White, UChicago 451a6784296d7a2482f79a13df8fbaaa https://www.encodeproject.org/files/ENCFF246WEH/@@download/ENCFF246WEH.bigWig released s3://encode-public/2018/02/03/46a37bb9-ee92-414d-8d8e-f99b22b0f33d/ENCFF246WEH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF654LMA bigWig bigWig signal of unique reads dm6 ENCSR303RFP Control ChIP-seq /fly-donors/ENCDO624VZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42638/'], '@type': ['Target', 'Item'], 'name': 'CG34376-dmelanogaster', 'label': 'CG34376', '@id': '/targets/CG34376-dmelanogaster/', 'title': 'CG34376 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b9887d7f-50a8-43ac-b21b-5bcdfa8ddd67', 'status': 'released'} dm3 3R 18270330 18293284 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF086BBN/ 3226451 Kevin White, UChicago d4e67529a7c7525d9b3edd7cdacabe46 https://www.encodeproject.org/files/ENCFF654LMA/@@download/ENCFF654LMA.bigWig released s3://encode-public/2018/02/03/40818c1b-1a5a-4838-ae7b-287a3aa934af/ENCFF654LMA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF764BLL fastq fastq reads ENCSR173JYR Control ChIP-seq /worm-donors/ENCDO313CJU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172699/'], '@type': ['Target', 'Item'], 'name': 'ztf-26-celegans', 'label': 'ztf-26', '@id': '/targets/ztf-26-celegans/', 'title': 'ztf-26 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee22bd83-afd8-4e47-aead-fafab6f469ac', 'status': 'released'} ce11 I 8849620 8884946 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 815157559 Kevin White, UChicago 827893e4f4013f7a39eb55c4dd6a1d7f https://www.encodeproject.org/files/ENCFF764BLL/@@download/ENCFF764BLL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/23af820e-1bfd-4d00-a947-1cab6bfe6fa8/ENCFF764BLL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF216GFJ bam bam alignments ce10 ENCSR173JYR Control ChIP-seq /worm-donors/ENCDO313CJU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172699/'], '@type': ['Target', 'Item'], 'name': 'ztf-26-celegans', 'label': 'ztf-26', '@id': '/targets/ztf-26-celegans/', 'title': 'ztf-26 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee22bd83-afd8-4e47-aead-fafab6f469ac', 'status': 'released'} ce11 I 8849620 8884946 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF764BLL/ 983570338 Kevin White, UChicago 1b904e6c4c939d14f4ba850f00a18851 https://www.encodeproject.org/files/ENCFF216GFJ/@@download/ENCFF216GFJ.bam released s3://encode-public/2017/10/06/84cf8d33-efdd-4fb1-921e-5c2046fbe696/ENCFF216GFJ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF504QCO bam bam alignments ce11 ENCSR173JYR Control ChIP-seq /worm-donors/ENCDO313CJU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172699/'], '@type': ['Target', 'Item'], 'name': 'ztf-26-celegans', 'label': 'ztf-26', '@id': '/targets/ztf-26-celegans/', 'title': 'ztf-26 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee22bd83-afd8-4e47-aead-fafab6f469ac', 'status': 'released'} ce11 I 8849620 8884946 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF764BLL/ 984333928 Kevin White, UChicago 38e90a1505c39400a6e34e05054574cc https://www.encodeproject.org/files/ENCFF504QCO/@@download/ENCFF504QCO.bam released s3://encode-public/2017/10/07/6aa73cbe-92c8-42b3-bcbe-b662a64bfd10/ENCFF504QCO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF351BTT bigWig bigWig signal of unique reads ce10 ENCSR173JYR Control ChIP-seq /worm-donors/ENCDO313CJU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172699/'], '@type': ['Target', 'Item'], 'name': 'ztf-26-celegans', 'label': 'ztf-26', '@id': '/targets/ztf-26-celegans/', 'title': 'ztf-26 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee22bd83-afd8-4e47-aead-fafab6f469ac', 'status': 'released'} ce11 I 8849620 8884946 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF216GFJ/ 9925306 Kevin White, UChicago 7c59a1c6647c518efd12e40ac9e30043 https://www.encodeproject.org/files/ENCFF351BTT/@@download/ENCFF351BTT.bigWig released s3://encode-public/2017/10/09/f8a7b529-4bd1-4a9e-8f5f-11013cc23f84/ENCFF351BTT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF606ZHN bigWig bigWig read-depth normalized signal ce10 ENCSR173JYR Control ChIP-seq /worm-donors/ENCDO313CJU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172699/'], '@type': ['Target', 'Item'], 'name': 'ztf-26-celegans', 'label': 'ztf-26', '@id': '/targets/ztf-26-celegans/', 'title': 'ztf-26 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee22bd83-afd8-4e47-aead-fafab6f469ac', 'status': 'released'} ce11 I 8849620 8884946 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF216GFJ/ 9935797 Kevin White, UChicago 4b91741b539db8d4156fa1cbd5c111a7 https://www.encodeproject.org/files/ENCFF606ZHN/@@download/ENCFF606ZHN.bigWig released s3://encode-public/2017/10/09/e7e4199c-2958-462f-a906-6c8c73afde76/ENCFF606ZHN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF705RPJ bigWig bigWig read-depth normalized signal ce11 ENCSR173JYR Control ChIP-seq /worm-donors/ENCDO313CJU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172699/'], '@type': ['Target', 'Item'], 'name': 'ztf-26-celegans', 'label': 'ztf-26', '@id': '/targets/ztf-26-celegans/', 'title': 'ztf-26 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee22bd83-afd8-4e47-aead-fafab6f469ac', 'status': 'released'} ce11 I 8849620 8884946 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF504QCO/ 9932783 Kevin White, UChicago adfcde143e5bbdc346f0c20cd5bf448c https://www.encodeproject.org/files/ENCFF705RPJ/@@download/ENCFF705RPJ.bigWig released s3://encode-public/2017/10/09/7aa5d0ef-9c89-4a72-b2a8-44675f482873/ENCFF705RPJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF088PAC bigWig bigWig signal of unique reads ce11 ENCSR173JYR Control ChIP-seq /worm-donors/ENCDO313CJU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172699/'], '@type': ['Target', 'Item'], 'name': 'ztf-26-celegans', 'label': 'ztf-26', '@id': '/targets/ztf-26-celegans/', 'title': 'ztf-26 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee22bd83-afd8-4e47-aead-fafab6f469ac', 'status': 'released'} ce11 I 8849620 8884946 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF504QCO/ 9922190 Kevin White, UChicago 37ee51116939023feb53263d31aaf19f https://www.encodeproject.org/files/ENCFF088PAC/@@download/ENCFF088PAC.bigWig released s3://encode-public/2017/10/09/e3da69b1-87c0-4358-bb44-4a0ec25148e4/ENCFF088PAC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF439YMB fastq fastq reads ENCSR109XBO Control ChIP-seq /worm-donors/ENCDO000CDG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180756/'], '@type': ['Target', 'Item'], 'name': 'ztf-16-celegans', 'label': 'ztf-16', '@id': '/targets/ztf-16-celegans/', 'title': 'ztf-16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6e3f9563-7247-4d5b-9802-dcb00a5cc911', 'status': 'released'} ce11 X 4790552 4822110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 672059370 Kevin White, UChicago dcaf354e3811b4b81ed77c4643ab9605 https://www.encodeproject.org/files/ENCFF439YMB/@@download/ENCFF439YMB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/10/05/6a374cc4-81c8-4437-9a06-c1a893711aca/ENCFF439YMB.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF391ZPD bam bam alignments ce10 ENCSR109XBO Control ChIP-seq /worm-donors/ENCDO000CDG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180756/'], '@type': ['Target', 'Item'], 'name': 'ztf-16-celegans', 'label': 'ztf-16', '@id': '/targets/ztf-16-celegans/', 'title': 'ztf-16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6e3f9563-7247-4d5b-9802-dcb00a5cc911', 'status': 'released'} ce11 X 4790552 4822110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF439YMB/ 795085009 Kevin White, UChicago 9609db702d828275f0e154aa32c130ea https://www.encodeproject.org/files/ENCFF391ZPD/@@download/ENCFF391ZPD.bam released s3://encode-public/2017/10/06/e31c396f-51a4-4629-a605-759a44af5e8a/ENCFF391ZPD.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF487IMI bam bam alignments ce11 ENCSR109XBO Control ChIP-seq /worm-donors/ENCDO000CDG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180756/'], '@type': ['Target', 'Item'], 'name': 'ztf-16-celegans', 'label': 'ztf-16', '@id': '/targets/ztf-16-celegans/', 'title': 'ztf-16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6e3f9563-7247-4d5b-9802-dcb00a5cc911', 'status': 'released'} ce11 X 4790552 4822110 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF439YMB/ 795744119 Kevin White, UChicago 96e27f1e9a7cd9e17d5490e00a8ebf97 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DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF685IMM/ 2572317812 Michael Snyder, Stanford 3c8d4f0536fedf63f3f8e75617b4d604 https://www.encodeproject.org/files/ENCFF700ROB/@@download/ENCFF700ROB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/cee449c0-8b1b-4c78-bb4b-ef8ec14c99b2/ENCFF700ROB.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF878BVP bam bam unfiltered alignments GRCh38 ENCSR919BBP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57659/'], '@type': ['Target', 'Item'], 'name': 'ZBTB4-human', 'label': 'ZBTB4', '@id': 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elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179809/'], '@type': ['Target', 'Item'], 'name': 'ceh-79-celegans', 'label': 'ceh-79', '@id': '/targets/ceh-79-celegans/', 'title': 'ceh-79 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '33af6ebe-d7b9-46a2-9250-7826b8e3ed01', 'status': 'released'} ce11 V 13280727 13312393 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1141628563 Kevin White, UChicago e8b1d51bb7f80ef3a52daf0310093a96 https://www.encodeproject.org/files/ENCFF277AKS/@@download/ENCFF277AKS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/1016226d-d267-4bcd-9f8f-37fd98be437e/ENCFF277AKS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF610IKQ bam bam alignments ce10 ENCSR065TMZ Control ChIP-seq /worm-donors/ENCDO314LAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179809/'], '@type': ['Target', 'Item'], 'name': 'ceh-79-celegans', 'label': 'ceh-79', '@id': '/targets/ceh-79-celegans/', 'title': 'ceh-79 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '33af6ebe-d7b9-46a2-9250-7826b8e3ed01', 'status': 'released'} ce11 V 13280727 13312393 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF277AKS/ 1451417382 Kevin White, UChicago d9c676e5c53ae68a1f2b9374e963015c https://www.encodeproject.org/files/ENCFF610IKQ/@@download/ENCFF610IKQ.bam released s3://encode-public/2017/10/06/04422027-824b-4bf5-a971-8f170de507c8/ENCFF610IKQ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF824ONH bam bam alignments ce11 ENCSR065TMZ Control ChIP-seq /worm-donors/ENCDO314LAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179809/'], '@type': ['Target', 'Item'], 'name': 'ceh-79-celegans', 'label': 'ceh-79', '@id': '/targets/ceh-79-celegans/', 'title': 'ceh-79 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '33af6ebe-d7b9-46a2-9250-7826b8e3ed01', 'status': 'released'} ce11 V 13280727 13312393 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF277AKS/ 1452508187 Kevin White, UChicago 7a65550e25943136b7081b9a6c33b7a0 https://www.encodeproject.org/files/ENCFF824ONH/@@download/ENCFF824ONH.bam released s3://encode-public/2017/10/06/e7fa5d8f-eeba-4578-ae20-c979882ea555/ENCFF824ONH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF159QWS bigWig bigWig signal of unique reads ce10 ENCSR065TMZ Control ChIP-seq /worm-donors/ENCDO314LAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179809/'], '@type': ['Target', 'Item'], 'name': 'ceh-79-celegans', 'label': 'ceh-79', '@id': '/targets/ceh-79-celegans/', 'title': 'ceh-79 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '33af6ebe-d7b9-46a2-9250-7826b8e3ed01', 'status': 'released'} ce11 V 13280727 13312393 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF610IKQ/ 9993730 Kevin White, UChicago 2f27e82cbc6f59b973a64ec2211670c1 https://www.encodeproject.org/files/ENCFF159QWS/@@download/ENCFF159QWS.bigWig released s3://encode-public/2017/10/09/0c01c4a9-0a51-4883-bf7e-f0be5ec6bf0a/ENCFF159QWS.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF668IHZ bigWig bigWig read-depth normalized signal ce10 ENCSR065TMZ Control ChIP-seq /worm-donors/ENCDO314LAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179809/'], '@type': ['Target', 'Item'], 'name': 'ceh-79-celegans', 'label': 'ceh-79', '@id': '/targets/ceh-79-celegans/', 'title': 'ceh-79 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '33af6ebe-d7b9-46a2-9250-7826b8e3ed01', 'status': 'released'} ce11 V 13280727 13312393 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF610IKQ/ 9935687 Kevin White, UChicago c4fb9fa7377b7b1f687d51e5074ca5e2 https://www.encodeproject.org/files/ENCFF668IHZ/@@download/ENCFF668IHZ.bigWig released s3://encode-public/2017/10/09/8d8156f4-75a6-44b6-8a67-a43a4586369a/ENCFF668IHZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF536TYR bigWig bigWig signal of unique reads ce11 ENCSR065TMZ Control ChIP-seq /worm-donors/ENCDO314LAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179809/'], '@type': ['Target', 'Item'], 'name': 'ceh-79-celegans', 'label': 'ceh-79', '@id': '/targets/ceh-79-celegans/', 'title': 'ceh-79 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '33af6ebe-d7b9-46a2-9250-7826b8e3ed01', 'status': 'released'} ce11 V 13280727 13312393 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF824ONH/ 9988180 Kevin White, UChicago 3410dd43cefb3dced917b2ee0fab12c6 https://www.encodeproject.org/files/ENCFF536TYR/@@download/ENCFF536TYR.bigWig released s3://encode-public/2017/10/09/d9b53851-783d-4f6f-81bc-5d7e222aeba3/ENCFF536TYR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF018NTS bigWig bigWig read-depth normalized signal ce11 ENCSR065TMZ Control ChIP-seq /worm-donors/ENCDO314LAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179809/'], '@type': ['Target', 'Item'], 'name': 'ceh-79-celegans', 'label': 'ceh-79', '@id': '/targets/ceh-79-celegans/', 'title': 'ceh-79 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '33af6ebe-d7b9-46a2-9250-7826b8e3ed01', 'status': 'released'} ce11 V 13280727 13312393 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF824ONH/ 9930470 Kevin White, UChicago 7b950099e9a8c1a2e18439aab9da9120 https://www.encodeproject.org/files/ENCFF018NTS/@@download/ENCFF018NTS.bigWig released s3://encode-public/2017/10/09/588bb325-e0e2-46c4-b921-c8c254051516/ENCFF018NTS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF087CZS fastq fastq reads ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 586341059 Bradley Bernstein, Broad 9ce7c9a07c24e9902785d5aca52e77ed SRA:SRR10838420 https://www.encodeproject.org/files/ENCFF087CZS/@@download/ENCFF087CZS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/979d43d6-35da-44e0-86d6-24cedf25380f/ENCFF087CZS.fastq.gz ENCFF671WQP fastq fastq reads ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 599955080 Bradley Bernstein, Broad 080e6df8ef3a944f1fbf09bf8a9a97ba SRA:SRR10838421 https://www.encodeproject.org/files/ENCFF671WQP/@@download/ENCFF671WQP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/4ff8f746-653d-4c91-9a6b-6e8d01195c7f/ENCFF671WQP.fastq.gz ENCFF089EGV bam bam alignments GRCh38 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF671WQP/, /files/ENCFF790WMQ/, /files/ENCFF827DIG/, /files/ENCFF087CZS/, /files/ENCFF331DUR/, /files/ENCFF398IHE/ 4439609004 ENCODE Processing Pipeline 0dae7346e25fa02ea531c9111b7620dd https://www.encodeproject.org/files/ENCFF089EGV/@@download/ENCFF089EGV.bam released s3://encode-public/2018/11/27/ce731684-0108-4570-9121-8a6d56361c82/ENCFF089EGV.bam ENCODE3 GRCh38 archived ENCFF912VLU bam bam unfiltered alignments GRCh38 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF671WQP/, /files/ENCFF790WMQ/, /files/ENCFF827DIG/, /files/ENCFF087CZS/, /files/ENCFF331DUR/, /files/ENCFF398IHE/ 5325954233 ENCODE Processing Pipeline 65804bae2b20a9ead869648e6d592ec2 https://www.encodeproject.org/files/ENCFF912VLU/@@download/ENCFF912VLU.bam released s3://encode-public/2018/11/27/195b81aa-287b-4633-9dd8-506c52128c8a/ENCFF912VLU.bam ENCODE3 GRCh38 archived ENCFF301ABE bam bam unfiltered alignments hg19 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF671WQP/, /files/ENCFF790WMQ/, /files/ENCFF807MUK/, /files/ENCFF827DIG/, /files/ENCFF087CZS/, /files/ENCFF331DUR/, /files/ENCFF398IHE/ 6158721644 ENCODE Processing Pipeline df5ccdf300a89679493a7e0e807dee16 https://www.encodeproject.org/files/ENCFF301ABE/@@download/ENCFF301ABE.bam archived s3://encode-public/2018/11/27/246881bb-5144-48db-8a78-c95a8f6e9522/ENCFF301ABE.bam ENCODE3 hg19 archived ENCFF586XKR bam bam alignments hg19 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF671WQP/, /files/ENCFF790WMQ/, /files/ENCFF807MUK/, /files/ENCFF827DIG/, /files/ENCFF087CZS/, /files/ENCFF331DUR/, /files/ENCFF398IHE/ 4433280686 ENCODE Processing Pipeline edba731ae0f7d1bb1e53b59b0be06e1e https://www.encodeproject.org/files/ENCFF586XKR/@@download/ENCFF586XKR.bam archived s3://encode-public/2018/11/27/4cf6f389-96a7-47e9-a5c4-ef3f09465edc/ENCFF586XKR.bam ENCODE3 hg19 archived ENCFF755RLC bam bam unfiltered alignments hg19 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF671WQP/, /files/ENCFF790WMQ/, /files/ENCFF807MUK/, /files/ENCFF827DIG/, /files/ENCFF087CZS/, /files/ENCFF331DUR/, /files/ENCFF398IHE/ 5310344353 ENCODE Processing Pipeline 48cab3f5abef055e5ffe4e6fa21ab198 https://www.encodeproject.org/files/ENCFF755RLC/@@download/ENCFF755RLC.bam released s3://encode-public/2019/08/30/6350c07e-2358-4335-8efb-15697608723f/ENCFF755RLC.bam ENCODE3 hg19 archived ENCFF983NHS bam bam alignments hg19 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF671WQP/, /files/ENCFF790WMQ/, /files/ENCFF807MUK/, /files/ENCFF827DIG/, /files/ENCFF087CZS/, /files/ENCFF331DUR/, /files/ENCFF398IHE/ 4433280681 ENCODE Processing Pipeline f807a8cca80ce40e27801a3e2ebc12d3 https://www.encodeproject.org/files/ENCFF983NHS/@@download/ENCFF983NHS.bam released s3://encode-public/2019/08/30/62546459-8b57-4251-9769-5e511dba486a/ENCFF983NHS.bam ENCODE3 hg19 archived ENCFF790WMQ fastq fastq reads ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 1434084948 Bradley Bernstein, Broad c9e15304948e48b575442fc73c26dbfc SRA:SRR10838416 https://www.encodeproject.org/files/ENCFF790WMQ/@@download/ENCFF790WMQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/db5b8a72-f823-4fba-8026-10f4555463d6/ENCFF790WMQ.fastq.gz ENCFF398IHE fastq fastq reads ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 804974390 Bradley Bernstein, Broad 49a9dba90539eb0a55935e04b868c5b4 SRA:SRR10838417 https://www.encodeproject.org/files/ENCFF398IHE/@@download/ENCFF398IHE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/38e710b2-eea3-48cc-b290-25ee1169aa11/ENCFF398IHE.fastq.gz ENCFF827DIG fastq fastq reads ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 1398739278 Bradley Bernstein, Broad 6027b38daece084dbe699c3681a1c1fc SRA:SRR10838418 https://www.encodeproject.org/files/ENCFF827DIG/@@download/ENCFF827DIG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/11661218-5d55-466d-a735-20accdb03e41/ENCFF827DIG.fastq.gz ENCFF331DUR fastq fastq reads ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 791874888 Bradley Bernstein, Broad 41cda125fd442d41fd8aa465bdfcad25 SRA:SRR10838419 https://www.encodeproject.org/files/ENCFF331DUR/@@download/ENCFF331DUR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/71e4599b-657a-4fe1-9b86-95ec847a138f/ENCFF331DUR.fastq.gz ENCFF464LOT bam bam unfiltered alignments GRCh38 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF671WQP/, /files/ENCFF331DUR/, /files/ENCFF790WMQ/, /files/ENCFF398IHE/, /files/ENCFF827DIG/, /files/ENCFF087CZS/ 5380288697 ENCODE Processing Pipeline 59854aaac55f2bd41e2a6a9c85e1482b https://www.encodeproject.org/files/ENCFF464LOT/@@download/ENCFF464LOT.bam released s3://encode-public/2020/09/19/d1a13a6e-98bf-471d-abfc-f2dfeae56958/ENCFF464LOT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF955MBV bam bam alignments GRCh38 ENCSR777AJC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF671WQP/, /files/ENCFF331DUR/, /files/ENCFF790WMQ/, /files/ENCFF398IHE/, /files/ENCFF827DIG/, /files/ENCFF087CZS/ 4522092140 ENCODE Processing Pipeline 9abfeeae788f859f6160f5ed2959c296 https://www.encodeproject.org/files/ENCFF955MBV/@@download/ENCFF955MBV.bam released s3://encode-public/2020/09/19/21f67b6e-be86-4771-87b5-903bc91dc077/ENCFF955MBV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF067YDA fastq fastq reads ENCSR615YWF Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF186HLL/ 3253912574 Michael Snyder, Stanford c2c1bfc35ebb7349f44ee7acff6a18c5 SRA:SRR16812487 https://www.encodeproject.org/files/ENCFF067YDA/@@download/ENCFF067YDA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/03/22/2f4ab9d7-e178-44a0-b4d5-3f6bb2ac2b71/ENCFF067YDA.fastq.gz mild to moderate bottlenecking ENCFF186HLL fastq fastq reads ENCSR615YWF Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF067YDA/ 3318447772 Michael Snyder, Stanford 862d80c46ae4b2224d294a7cd10b0a39 SRA:SRR16812487 https://www.encodeproject.org/files/ENCFF186HLL/@@download/ENCFF186HLL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/03/22/d314d928-0063-4ef6-8dd7-65b19cfd651b/ENCFF186HLL.fastq.gz mild to moderate bottlenecking ENCFF363SVN bam bam unfiltered alignments GRCh38 ENCSR615YWF Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF067YDA/, /files/ENCFF110MCL/, /files/ENCFF186HLL/ 6002946900 ENCODE Processing Pipeline 95ba8bada469f5c6675942be98f3e6d8 https://www.encodeproject.org/files/ENCFF363SVN/@@download/ENCFF363SVN.bam released s3://encode-public/2021/05/27/0e021e69-430a-4628-970f-39f5d4cfc55a/ENCFF363SVN.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF532QQP bam bam alignments GRCh38 ENCSR615YWF Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF067YDA/, /files/ENCFF110MCL/, /files/ENCFF186HLL/ 4522049901 ENCODE Processing Pipeline ec8d49d767d54f2a70853034ba05bdc0 https://www.encodeproject.org/files/ENCFF532QQP/@@download/ENCFF532QQP.bam released s3://encode-public/2021/05/27/edddb5f4-13dc-4cf4-ac47-19b18bc3d920/ENCFF532QQP.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF595YQZ fastq fastq reads ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175587/'], '@type': ['Target', 'Item'], 'name': 'atf-7-celegans', 'label': 'atf-7', '@id': '/targets/atf-7-celegans/', 'title': 'atf-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5b54cd2-3c82-4d24-9f16-847edd7a3140', 'status': 'released'} ce11 III 4483816 4517237 DNA 2017-11-22 modERN sonication (generic microtip) 3 3_1 50 single-ended 414865761 Kevin White, UChicago 3a4aa4b2b695eca4ecaf6903b0f2ccf4 https://www.encodeproject.org/files/ENCFF595YQZ/@@download/ENCFF595YQZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/d418e852-cb94-4531-afce-2a7355ac5525/ENCFF595YQZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF812WUB fastq fastq reads ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175587/'], '@type': ['Target', 'Item'], 'name': 'atf-7-celegans', 'label': 'atf-7', '@id': '/targets/atf-7-celegans/', 'title': 'atf-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5b54cd2-3c82-4d24-9f16-847edd7a3140', 'status': 'released'} ce11 III 4483816 4517237 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 594333859 Kevin White, UChicago c669bf2328b92e8396a14f9d6edd4caf https://www.encodeproject.org/files/ENCFF812WUB/@@download/ENCFF812WUB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/2dc803db-f701-4ba5-8518-ba427856d870/ENCFF812WUB.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF618VRA bam bam alignments ce10 ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175587/'], '@type': ['Target', 'Item'], 'name': 'atf-7-celegans', 'label': 'atf-7', '@id': '/targets/atf-7-celegans/', 'title': 'atf-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5b54cd2-3c82-4d24-9f16-847edd7a3140', 'status': 'released'} ce11 III 4483816 4517237 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 50 /files/ENCFF987UMF/, /files/ENCFF812WUB/, /files/ENCFF595YQZ/ 1322637486 Kevin White, UChicago d1ca7d5ce96274deaa19c5d010efd6f5 https://www.encodeproject.org/files/ENCFF618VRA/@@download/ENCFF618VRA.bam released s3://encode-public/2017/10/06/f992122a-0e08-4b19-8d3a-6fd3671da8e4/ENCFF618VRA.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF320GAM bam bam alignments ce11 ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175587/'], '@type': ['Target', 'Item'], 'name': 'atf-7-celegans', 'label': 'atf-7', '@id': '/targets/atf-7-celegans/', 'title': 'atf-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5b54cd2-3c82-4d24-9f16-847edd7a3140', 'status': 'released'} ce11 III 4483816 4517237 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 50 /files/ENCFF586MOL/, /files/ENCFF812WUB/, /files/ENCFF595YQZ/ 1323757242 Kevin White, UChicago efcf07bee3b34571af8207e09e43e3ca https://www.encodeproject.org/files/ENCFF320GAM/@@download/ENCFF320GAM.bam released s3://encode-public/2017/10/07/a8e54ac3-1b71-4f8a-be4a-791721e4c186/ENCFF320GAM.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF974QJZ bigWig bigWig signal of unique reads ce10 ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175587/'], '@type': ['Target', 'Item'], 'name': 'atf-7-celegans', 'label': 'atf-7', '@id': '/targets/atf-7-celegans/', 'title': 'atf-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5b54cd2-3c82-4d24-9f16-847edd7a3140', 'status': 'released'} ce11 III 4483816 4517237 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF618VRA/ 9993785 Kevin White, UChicago 3a18143d9127906da81703f5b147e7f0 https://www.encodeproject.org/files/ENCFF974QJZ/@@download/ENCFF974QJZ.bigWig released s3://encode-public/2017/10/09/f51e731f-8b55-4601-92ff-c05a8948a776/ENCFF974QJZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF681ZPW bigWig bigWig read-depth normalized signal ce10 ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175587/'], '@type': ['Target', 'Item'], 'name': 'atf-7-celegans', 'label': 'atf-7', '@id': '/targets/atf-7-celegans/', 'title': 'atf-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5b54cd2-3c82-4d24-9f16-847edd7a3140', 'status': 'released'} ce11 III 4483816 4517237 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF618VRA/ 9934782 Kevin White, UChicago 19b20d9a8bafb0cc11b69838b39a6cd0 https://www.encodeproject.org/files/ENCFF681ZPW/@@download/ENCFF681ZPW.bigWig released s3://encode-public/2017/10/09/564f4eb0-22e9-408d-8b70-4ae86d1c7a1f/ENCFF681ZPW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF292QXI bigWig bigWig read-depth normalized signal ce11 ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175587/'], '@type': ['Target', 'Item'], 'name': 'atf-7-celegans', 'label': 'atf-7', '@id': '/targets/atf-7-celegans/', 'title': 'atf-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5b54cd2-3c82-4d24-9f16-847edd7a3140', 'status': 'released'} ce11 III 4483816 4517237 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF320GAM/ 9930699 Kevin White, UChicago 714ce7df50e69ec81fa68c906f049abb https://www.encodeproject.org/files/ENCFF292QXI/@@download/ENCFF292QXI.bigWig released s3://encode-public/2017/10/09/9ff11c6a-9368-4f7b-b215-45a6ef29ec0c/ENCFF292QXI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF683ZRA bigWig bigWig signal of unique reads ce11 ENCSR263QJN Control ChIP-seq /worm-donors/ENCDO449FVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178147/'], '@type': ['Target', 'Item'], 'name': 'repo-1-celegans', 'label': 'repo-1', '@id': '/targets/repo-1-celegans/', 'title': 'repo-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1b3005e-f907-4c25-a406-606cc0fd84a7', 'status': 'released'} ce11 IV 12075845 12111824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 537524515 Kevin White, UChicago 363ffb7bdce814f3fe30efd9b34b37a0 https://www.encodeproject.org/files/ENCFF325QJZ/@@download/ENCFF325QJZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/1a8e3d55-29c7-4290-89e3-d04256c4cda5/ENCFF325QJZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF154ELB bam bam alignments ce10 ENCSR078ZXA Control ChIP-seq /worm-donors/ENCDO031KDN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178147/'], '@type': ['Target', 'Item'], 'name': 'repo-1-celegans', 'label': 'repo-1', '@id': '/targets/repo-1-celegans/', 'title': 'repo-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1b3005e-f907-4c25-a406-606cc0fd84a7', 'status': 'released'} ce11 IV 12075845 12111824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF325QJZ/ 702762768 Kevin White, UChicago 508e6ee571349a918522741e67068532 https://www.encodeproject.org/files/ENCFF154ELB/@@download/ENCFF154ELB.bam released s3://encode-public/2017/10/06/40bbb495-8eb2-4c04-848b-b6ef3b54ee07/ENCFF154ELB.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF069GKU bam bam alignments ce11 ENCSR078ZXA Control ChIP-seq /worm-donors/ENCDO031KDN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178147/'], '@type': ['Target', 'Item'], 'name': 'repo-1-celegans', 'label': 'repo-1', '@id': '/targets/repo-1-celegans/', 'title': 'repo-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1b3005e-f907-4c25-a406-606cc0fd84a7', 'status': 'released'} ce11 IV 12075845 12111824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF325QJZ/ 703334073 Kevin White, UChicago 77ce9cc97d5fb375bc0d2a657bd9261a https://www.encodeproject.org/files/ENCFF069GKU/@@download/ENCFF069GKU.bam released s3://encode-public/2017/10/06/948197f0-ab85-44c1-8762-0f2a6f984dcd/ENCFF069GKU.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF790HST bigWig bigWig signal of unique reads ce10 ENCSR078ZXA Control ChIP-seq /worm-donors/ENCDO031KDN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178147/'], '@type': ['Target', 'Item'], 'name': 'repo-1-celegans', 'label': 'repo-1', '@id': '/targets/repo-1-celegans/', 'title': 'repo-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1b3005e-f907-4c25-a406-606cc0fd84a7', 'status': 'released'} ce11 IV 12075845 12111824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF154ELB/ 9915261 Kevin White, UChicago 2af833bd27a14698b0e8682725c6ecdd https://www.encodeproject.org/files/ENCFF790HST/@@download/ENCFF790HST.bigWig released s3://encode-public/2017/10/09/2f2c6dc6-be83-4606-9581-7aa34d7c9ba4/ENCFF790HST.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF042DOC bigWig bigWig read-depth normalized signal ce10 ENCSR078ZXA Control ChIP-seq /worm-donors/ENCDO031KDN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178147/'], '@type': ['Target', 'Item'], 'name': 'repo-1-celegans', 'label': 'repo-1', '@id': '/targets/repo-1-celegans/', 'title': 'repo-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1b3005e-f907-4c25-a406-606cc0fd84a7', 'status': 'released'} ce11 IV 12075845 12111824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF154ELB/ 9917804 Kevin White, UChicago 5b0b19a41ade4d6e9231ef5be1f687f0 https://www.encodeproject.org/files/ENCFF042DOC/@@download/ENCFF042DOC.bigWig released s3://encode-public/2017/10/09/9a3b976f-dbcd-4610-aef6-c74588d8d06f/ENCFF042DOC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF278VBR bigWig bigWig read-depth normalized signal ce11 ENCSR078ZXA Control ChIP-seq /worm-donors/ENCDO031KDN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178147/'], '@type': ['Target', 'Item'], 'name': 'repo-1-celegans', 'label': 'repo-1', '@id': '/targets/repo-1-celegans/', 'title': 'repo-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1b3005e-f907-4c25-a406-606cc0fd84a7', 'status': 'released'} ce11 IV 12075845 12111824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF069GKU/ 9917314 Kevin White, UChicago 450b7b2c0bc4aa4114021c8f0abb8462 https://www.encodeproject.org/files/ENCFF278VBR/@@download/ENCFF278VBR.bigWig released s3://encode-public/2017/10/09/3484f2da-2097-4349-8f78-7c4fa7a6bc89/ENCFF278VBR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF312JMD bigWig bigWig signal of unique reads ce11 ENCSR078ZXA Control ChIP-seq /worm-donors/ENCDO031KDN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178147/'], '@type': ['Target', 'Item'], 'name': 'repo-1-celegans', 'label': 'repo-1', '@id': '/targets/repo-1-celegans/', 'title': 'repo-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1b3005e-f907-4c25-a406-606cc0fd84a7', 'status': 'released'} ce11 IV 12075845 12111824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF069GKU/ 9913073 Kevin White, UChicago fd9066e5465520ec0dcbc92b478830bf https://www.encodeproject.org/files/ENCFF312JMD/@@download/ENCFF312JMD.bigWig released s3://encode-public/2017/10/09/05237dc2-496b-492b-99d5-e5095c3b7afb/ENCFF312JMD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF148ZUC fastq fastq reads ENCSR343HAH Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 paired-ended 1 /files/ENCFF376YYL/ 7277246870 Christine Disteche, UW a9da53c8f25f180de18690ea1739e305 https://www.encodeproject.org/files/ENCFF148ZUC/@@download/ENCFF148ZUC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/08/0faa46f6-2fac-403c-abba-2bfd3fb0d86b/ENCFF148ZUC.fastq.gz ENCFF376YYL fastq fastq reads ENCSR343HAH Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 paired-ended 2 /files/ENCFF148ZUC/ 7575254227 Christine Disteche, UW 817cdfd3b91071a933dfbc6fdc106b22 https://www.encodeproject.org/files/ENCFF376YYL/@@download/ENCFF376YYL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/09/3add10e5-31db-4b41-ab86-3264da2d02ed/ENCFF376YYL.fastq.gz ENCFF508PEV bam bam unfiltered alignments mm10 ENCSR343HAH Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 /files/ENCFF309GLL/, /files/ENCFF148ZUC/, /files/ENCFF376YYL/ 15256488427 ENCODE Processing Pipeline fdd474793435d3cd2df19fde49830c2d https://www.encodeproject.org/files/ENCFF508PEV/@@download/ENCFF508PEV.bam released s3://encode-public/2020/10/18/64740ccf-2277-4567-a0e8-8143dc3d4f93/ENCFF508PEV.bam ENCODE4 v1.5.1 mm10 released ENCFF548JZG bam bam alignments mm10 ENCSR343HAH Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 /files/ENCFF309GLL/, /files/ENCFF148ZUC/, /files/ENCFF376YYL/ 4865219455 ENCODE Processing Pipeline 26f5f2167b16c2063a880b478a760675 https://www.encodeproject.org/files/ENCFF548JZG/@@download/ENCFF548JZG.bam released s3://encode-public/2020/10/18/57c63b95-33a3-4e08-a3c1-78496fe2336b/ENCFF548JZG.bam ENCODE4 v1.5.1 mm10 released ENCFF180YNU fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 518345476 Bradley Bernstein, Broad a7f701976e233c8957243d14d94b74d6 SRA:SRR16812794 https://www.encodeproject.org/files/ENCFF180YNU/@@download/ENCFF180YNU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/2b8f0db6-db16-4a2f-ba1a-5af4414dd72f/ENCFF180YNU.fastq.gz ENCFF870LCM fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 526943470 Bradley Bernstein, Broad 544be4c5f9b0d6c2e4310e9481dd00df SRA:SRR16812795 https://www.encodeproject.org/files/ENCFF870LCM/@@download/ENCFF870LCM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/7c3ca3db-2f29-4092-a3a3-989e33cd85b2/ENCFF870LCM.fastq.gz ENCFF597TFS fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 613298860 Bradley Bernstein, Broad 083fcc5195ed681c5d6e1bb2313980b0 SRA:SRR16812798 https://www.encodeproject.org/files/ENCFF597TFS/@@download/ENCFF597TFS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/375668e8-e253-4807-9bac-7bef65756329/ENCFF597TFS.fastq.gz ENCFF426SHU fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 622947769 Bradley Bernstein, Broad 0c1edf31312a24c7ca761cc071b19f0c SRA:SRR16812799 https://www.encodeproject.org/files/ENCFF426SHU/@@download/ENCFF426SHU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/7a5f99ca-cba2-4717-ab64-b210b385182d/ENCFF426SHU.fastq.gz ENCFF687FSA fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 543038804 Bradley Bernstein, Broad 458cbdca519bf923cff75cfd52b49bba SRA:SRR16812796 https://www.encodeproject.org/files/ENCFF687FSA/@@download/ENCFF687FSA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/332a86a8-6a21-4f53-888d-508693e32c0d/ENCFF687FSA.fastq.gz ENCFF087TTR fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 623055312 Bradley Bernstein, Broad d04a8d17bc0e9a134735e2925b42e450 SRA:SRR16812800 https://www.encodeproject.org/files/ENCFF087TTR/@@download/ENCFF087TTR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/4917220d-a44c-459d-b4b8-e4d0e6f69ff3/ENCFF087TTR.fastq.gz ENCFF414STX fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 642504997 Bradley Bernstein, Broad f78673c48cae4dafbdbcace4cbd4fdc7 SRA:SRR16812801 https://www.encodeproject.org/files/ENCFF414STX/@@download/ENCFF414STX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/8d74407a-fe0a-4538-a814-c63f7d351e43/ENCFF414STX.fastq.gz ENCFF812ESQ fastq fastq reads ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 526933666 Bradley Bernstein, Broad e6b4faac241541430432f6dd414e6484 SRA:SRR16812797 https://www.encodeproject.org/files/ENCFF812ESQ/@@download/ENCFF812ESQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/5ec0f722-737c-4e00-99d2-d2fca844f235/ENCFF812ESQ.fastq.gz ENCFF562LCI bam bam unfiltered alignments GRCh38 ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF426SHU/, /files/ENCFF087TTR/, /files/ENCFF870LCM/, /files/ENCFF414STX/, /files/ENCFF597TFS/, /files/ENCFF180YNU/, /files/ENCFF110MCL/, /files/ENCFF812ESQ/, /files/ENCFF687FSA/ 4412035505 ENCODE Processing Pipeline 16cbb057b972d283070f1102b0ddb3d0 https://www.encodeproject.org/files/ENCFF562LCI/@@download/ENCFF562LCI.bam released s3://encode-public/2021/06/18/8f346de6-ca9e-477a-9be3-ff080b4852c4/ENCFF562LCI.bam ENCODE4 v1.8.0 GRCh38 released ENCFF212KOM bam bam alignments GRCh38 ENCSR557RJE Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF426SHU/, /files/ENCFF087TTR/, /files/ENCFF870LCM/, /files/ENCFF414STX/, /files/ENCFF597TFS/, /files/ENCFF180YNU/, /files/ENCFF110MCL/, /files/ENCFF812ESQ/, /files/ENCFF687FSA/ 3575496083 ENCODE Processing Pipeline bb873d1ade7847c9df7839244a777ce9 https://www.encodeproject.org/files/ENCFF212KOM/@@download/ENCFF212KOM.bam released s3://encode-public/2021/06/18/9c8c5c2a-1667-4299-afbf-8fe14de4ea0c/ENCFF212KOM.bam ENCODE4 v1.8.0 GRCh38 released ENCFF292PXZ fastq fastq reads ENCSR065VFN Control ChIP-seq /fly-donors/ENCDO883OIU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43782/'], '@type': ['Target', 'Item'], 'name': 'NfI-dmelanogaster', 'label': 'NfI', '@id': '/targets/NfI-dmelanogaster/', 'title': 'NfI (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '10e9e931-f927-4865-9ce3-ac074ed54b0a', 'status': 'released'} dm3 4 262613 282573 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1077525638 Kevin White, UChicago d35d6d8e6206e3001c5be79a5dc3c7c6 https://www.encodeproject.org/files/ENCFF292PXZ/@@download/ENCFF292PXZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF177XVE/ released s3://encode-public/2018/02/01/3221b74a-1d82-4bb0-b067-8b56ac7e03dd/ENCFF292PXZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF136MNO bam bam alignments dm6 ENCSR065VFN Control ChIP-seq /fly-donors/ENCDO883OIU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43782/'], '@type': ['Target', 'Item'], 'name': 'NfI-dmelanogaster', 'label': 'NfI', '@id': '/targets/NfI-dmelanogaster/', 'title': 'NfI (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '10e9e931-f927-4865-9ce3-ac074ed54b0a', 'status': 'released'} dm3 4 262613 282573 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF292PXZ/, /files/ENCFF479RCH/ 1443775425 Kevin White, UChicago 90a9265b66a3fb1b2e88e6be8409dd87 https://www.encodeproject.org/files/ENCFF136MNO/@@download/ENCFF136MNO.bam released s3://encode-public/2018/02/02/cc005ffe-9c30-4cac-bad3-3bcdc1ca7293/ENCFF136MNO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF108OYK bigWig bigWig read-depth normalized signal dm6 ENCSR065VFN Control ChIP-seq /fly-donors/ENCDO883OIU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43782/'], '@type': ['Target', 'Item'], 'name': 'NfI-dmelanogaster', 'label': 'NfI', '@id': '/targets/NfI-dmelanogaster/', 'title': 'NfI (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '10e9e931-f927-4865-9ce3-ac074ed54b0a', 'status': 'released'} dm3 4 262613 282573 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF136MNO/ 17711936 Kevin White, UChicago 1e24609d7260b9a070b47761406f6b32 https://www.encodeproject.org/files/ENCFF108OYK/@@download/ENCFF108OYK.bigWig released s3://encode-public/2018/02/02/35d3e036-bb35-4f32-9243-97209e35b69b/ENCFF108OYK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF527MHZ bigWig bigWig signal of unique reads dm6 ENCSR065VFN Control ChIP-seq /fly-donors/ENCDO883OIU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43782/'], '@type': ['Target', 'Item'], 'name': 'NfI-dmelanogaster', 'label': 'NfI', '@id': '/targets/NfI-dmelanogaster/', 'title': 'NfI (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '10e9e931-f927-4865-9ce3-ac074ed54b0a', 'status': 'released'} dm3 4 262613 282573 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF136MNO/ 17700762 Kevin White, UChicago 397eb2115ea3b695e10746426e96ccd8 https://www.encodeproject.org/files/ENCFF527MHZ/@@download/ENCFF527MHZ.bigWig released s3://encode-public/2018/02/02/1e4bff57-6c97-4943-a575-12aea76c8769/ENCFF527MHZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF441UVH fastq fastq reads ENCSR109IWL Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 458056591 Bradley Bernstein, Broad e0db83ecace0026bdb4e5a92005afd3f SRA:SRR16810665 https://www.encodeproject.org/files/ENCFF441UVH/@@download/ENCFF441UVH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f70b2e8d-b7f2-410e-add2-a059960c3023/ENCFF441UVH.fastq.gz ENCFF927UVF fastq fastq reads ENCSR109IWL Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 456988337 Bradley Bernstein, Broad 0166074bf687743466915a0a3e36c4d3 SRA:SRR16810666 https://www.encodeproject.org/files/ENCFF927UVF/@@download/ENCFF927UVF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/12137d29-d20f-418c-ba2c-ccf61ee551a2/ENCFF927UVF.fastq.gz ENCFF118ZDD fastq fastq reads ENCSR109IWL Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 453370797 Bradley Bernstein, Broad 9b26a51b9014961babe5447cf57827d8 SRA:SRR16810667 https://www.encodeproject.org/files/ENCFF118ZDD/@@download/ENCFF118ZDD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/7fdcce42-2ea3-405a-91b7-97ca052ecd1a/ENCFF118ZDD.fastq.gz ENCFF687GDG fastq fastq reads ENCSR109IWL Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 463108248 Bradley Bernstein, Broad e3dd46622b23d1ed3f7aa8f8ecaca6d7 SRA:SRR16810668 https://www.encodeproject.org/files/ENCFF687GDG/@@download/ENCFF687GDG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/4c268a1e-5b2c-4bbb-bc60-f7439c35fa84/ENCFF687GDG.fastq.gz ENCFF870SQA fastq fastq reads ENCSR109IWL Control ChIP-seq /human-donors/ENCDO967KID/ 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sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 740913039 Bradley Bernstein, Broad cbe111269569ca97aebfe3e3ba7b8e26 SRA:SRR16810663 https://www.encodeproject.org/files/ENCFF719TKU/@@download/ENCFF719TKU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f068fd83-3614-47e1-b5ff-898efa92aeb9/ENCFF719TKU.fastq.gz ENCFF145DUX fastq fastq reads ENCSR109IWL Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 725183017 Bradley Bernstein, Broad 794cb5067713a857324ee978094a6bed SRA:SRR16810664 https://www.encodeproject.org/files/ENCFF145DUX/@@download/ENCFF145DUX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/ca152047-2f2e-41d7-a38d-050076e7e7c0/ENCFF145DUX.fastq.gz ENCFF013ION bam bam alignments GRCh38 ENCSR109IWL Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 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https://www.encodeproject.org/files/ENCFF150TLK/@@download/ENCFF150TLK.bam released s3://encode-public/2021/09/15/7f1388b9-9731-4bca-97ac-17a4113733e1/ENCFF150TLK.bam ENCODE4 v1.8.0 GRCh38 released ENCFF564EFI fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 756866407 Bradley Bernstein, Broad fac5944c98d95a398c05b1677151c104 SRA:SRR16809005 https://www.encodeproject.org/files/ENCFF564EFI/@@download/ENCFF564EFI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f52c45b7-1371-4aa2-9011-4060d9f046ea/ENCFF564EFI.fastq.gz ENCFF055QLF fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 582175707 Bradley Bernstein, Broad ec0d21745f0356bcf80f793bedf717f0 SRA:SRR16809001 https://www.encodeproject.org/files/ENCFF055QLF/@@download/ENCFF055QLF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/8a653ced-5971-4965-a485-e6f07e89db3d/ENCFF055QLF.fastq.gz ENCFF534IEY fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 578521634 Bradley Bernstein, Broad 54c5e5d7e73468d4bb49e3a60d6dd1e2 SRA:SRR16809002 https://www.encodeproject.org/files/ENCFF534IEY/@@download/ENCFF534IEY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/ef4ac42f-bd6e-484b-83be-3868c555e33b/ENCFF534IEY.fastq.gz ENCFF065ODN fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 584088973 Bradley Bernstein, Broad facb81fd51aa8b76ec2d480353d1b9ae SRA:SRR16809003 https://www.encodeproject.org/files/ENCFF065ODN/@@download/ENCFF065ODN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/34781016-7822-4ebc-a3e9-b137acc118d4/ENCFF065ODN.fastq.gz ENCFF745ZPV fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 768960396 Bradley Bernstein, Broad cf5e34fccbb53bcd1a7399c53b184702 SRA:SRR16809006 https://www.encodeproject.org/files/ENCFF745ZPV/@@download/ENCFF745ZPV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/186e51c0-7f9b-4d7f-8e6d-a355cdfd5392/ENCFF745ZPV.fastq.gz ENCFF136VRK fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 763699971 Bradley Bernstein, Broad 84a8ecf5f1ca8eac7cd44e68470b4a3c SRA:SRR16809007 https://www.encodeproject.org/files/ENCFF136VRK/@@download/ENCFF136VRK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/b3688ebc-e956-4bef-a800-f35b7831bdf9/ENCFF136VRK.fastq.gz ENCFF175JOK fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 766809485 Bradley Bernstein, Broad bc4b6f0a23db1d8545feae6a72a23983 SRA:SRR16809008 https://www.encodeproject.org/files/ENCFF175JOK/@@download/ENCFF175JOK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f33c2576-1eae-4f54-a963-754b15f77a46/ENCFF175JOK.fastq.gz ENCFF857RLB fastq fastq reads ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 586958307 Bradley Bernstein, Broad 075f976cb1529db69c7686dacac9ac6f SRA:SRR16809004 https://www.encodeproject.org/files/ENCFF857RLB/@@download/ENCFF857RLB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/1ba95eee-4ca2-477d-91d9-322d0744beec/ENCFF857RLB.fastq.gz ENCFF554PHH bam bam unfiltered alignments GRCh38 ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF745ZPV/, /files/ENCFF564EFI/, /files/ENCFF055QLF/, /files/ENCFF534IEY/, /files/ENCFF110MCL/, /files/ENCFF065ODN/, /files/ENCFF857RLB/, /files/ENCFF175JOK/, /files/ENCFF136VRK/ 5156678378 ENCODE Processing Pipeline 974d54871f40f29b27ce6713b3fa1f7b https://www.encodeproject.org/files/ENCFF554PHH/@@download/ENCFF554PHH.bam released s3://encode-public/2021/09/15/84adee47-809b-4f54-bd06-b352404678f2/ENCFF554PHH.bam ENCODE4 v1.8.0 GRCh38 released ENCFF271VZL bam bam alignments GRCh38 ENCSR261PLD Control ChIP-seq /human-donors/ENCDO907YUG/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF745ZPV/, /files/ENCFF564EFI/, /files/ENCFF055QLF/, /files/ENCFF534IEY/, /files/ENCFF110MCL/, /files/ENCFF065ODN/, /files/ENCFF857RLB/, /files/ENCFF175JOK/, /files/ENCFF136VRK/ 4242411614 ENCODE Processing Pipeline af01fdd246b2ed7f1fddb360a84a167d https://www.encodeproject.org/files/ENCFF271VZL/@@download/ENCFF271VZL.bam released s3://encode-public/2021/09/15/aa42d793-a3b0-4bb7-bf10-7d63488705f6/ENCFF271VZL.bam ENCODE4 v1.8.0 GRCh38 released ENCFF893DHB fastq fastq reads ENCSR566WAB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/406/'], 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all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/406/'], '@type': ['Target', 'Item'], 'name': 'ARNTL-human', 'label': 'ARNTL', '@id': '/targets/ARNTL-human/', 'title': 'ARNTL (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef863c48-9680-4c8f-9d5f-01a66acd5d94', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF893DHB/, /files/ENCFF074SYB/ 5005718867 ENCODE Processing Pipeline b3ddd65d1f06a9d7641f27f1805c1ec9 https://www.encodeproject.org/files/ENCFF214SJI/@@download/ENCFF214SJI.bam released s3://encode-public/2020/04/20/eac11523-b7e9-485d-b738-a0098def4ed6/ENCFF214SJI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF277KDD bam bam alignments GRCh38 ENCSR566WAB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/406/'], '@type': ['Target', 'Item'], 'name': 'ARNTL-human', 'label': 'ARNTL', '@id': '/targets/ARNTL-human/', 'title': 'ARNTL (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef863c48-9680-4c8f-9d5f-01a66acd5d94', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF893DHB/, /files/ENCFF074SYB/ 3754657566 ENCODE Processing Pipeline 1a2d5454e003a20067391c97734c6c71 https://www.encodeproject.org/files/ENCFF277KDD/@@download/ENCFF277KDD.bam released s3://encode-public/2020/04/20/72321fc9-4364-4732-91ee-7011ac91c8dd/ENCFF277KDD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF388YCF fastq fastq reads ENCSR255MIG Control ChIP-seq /human-donors/ENCDO371BAE/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF877ZJH/ 4062656002 Michael Snyder, Stanford 14ff925e73f59c009904098784daa140 https://www.encodeproject.org/files/ENCFF388YCF/@@download/ENCFF388YCF.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/29/f97e2569-0c51-468b-9b29-3f4769b2fdb1/ENCFF388YCF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF877ZJH fastq fastq reads ENCSR255MIG Control ChIP-seq /human-donors/ENCDO371BAE/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF388YCF/ 4156955359 Michael Snyder, Stanford 8f73add12c571544b3ca619598364116 https://www.encodeproject.org/files/ENCFF877ZJH/@@download/ENCFF877ZJH.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/29/27b1c18c-5cb1-4de7-88bf-88d793445ff5/ENCFF877ZJH.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF185XTX bam bam alignments GRCh38 ENCSR255MIG Control ChIP-seq /human-donors/ENCDO371BAE/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF877ZJH/, /files/ENCFF388YCF/ 3660827770 ENCODE Processing Pipeline fdc5948d9fdfe8d916a4c0ea90221426 https://www.encodeproject.org/files/ENCFF185XTX/@@download/ENCFF185XTX.bam released s3://encode-public/2020/10/14/460b365c-8122-4cba-a780-42aa91e8a2c8/ENCFF185XTX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF122FUS bam bam unfiltered alignments GRCh38 ENCSR255MIG Control ChIP-seq /human-donors/ENCDO371BAE/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF877ZJH/, /files/ENCFF388YCF/ 6235209894 ENCODE Processing Pipeline 1d89d2b2e11471de71ee25166b9cf10c https://www.encodeproject.org/files/ENCFF122FUS/@@download/ENCFF122FUS.bam released s3://encode-public/2020/10/14/55deb5a2-6a85-485d-abe2-c23b464ec327/ENCFF122FUS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF326CHO fastq fastq reads ENCSR633YHP Control ChIP-seq /worm-donors/ENCDO184QGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176054/'], '@type': ['Target', 'Item'], 'name': 'tbp1-celegans', 'label': 'tbp1', '@id': '/targets/tbp1-celegans/', 'title': 'tbp1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8f84199c-2d54-4646-9233-840b8f6ea228', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 800898880 Kevin White, UChicago 9b81e753d6247ff98595753083136aef https://www.encodeproject.org/files/ENCFF326CHO/@@download/ENCFF326CHO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/fa5bd04f-2c19-46ae-9157-87532869c71d/ENCFF326CHO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF844RXY bam bam alignments ce11 ENCSR633YHP Control ChIP-seq /worm-donors/ENCDO184QGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176054/'], '@type': ['Target', 'Item'], 'name': 'tbp1-celegans', 'label': 'tbp1', '@id': '/targets/tbp1-celegans/', 'title': 'tbp1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8f84199c-2d54-4646-9233-840b8f6ea228', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF326CHO/, /files/ENCFF586MOL/ 1043085011 Kevin White, UChicago 7a8c78d179e6e4064e7125ff753955c7 https://www.encodeproject.org/files/ENCFF844RXY/@@download/ENCFF844RXY.bam released s3://encode-public/2018/03/01/cca9ed76-5a28-4d33-82ed-7f4401e5fea7/ENCFF844RXY.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF076VOC bigWig bigWig signal of unique reads ce11 ENCSR633YHP Control ChIP-seq /worm-donors/ENCDO184QGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176054/'], '@type': ['Target', 'Item'], 'name': 'tbp1-celegans', 'label': 'tbp1', '@id': '/targets/tbp1-celegans/', 'title': 'tbp1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8f84199c-2d54-4646-9233-840b8f6ea228', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF844RXY/ 9949723 Kevin White, UChicago 546e8b8527b283ed8feb7fea403e4d7d https://www.encodeproject.org/files/ENCFF076VOC/@@download/ENCFF076VOC.bigWig released s3://encode-public/2018/03/01/be6fcdf1-7a7a-4ec1-af62-1bd08b6ac5e8/ENCFF076VOC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF923CHX bigWig bigWig read-depth normalized signal ce11 ENCSR633YHP Control ChIP-seq /worm-donors/ENCDO184QGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176054/'], '@type': ['Target', 'Item'], 'name': 'tbp1-celegans', 'label': 'tbp1', '@id': '/targets/tbp1-celegans/', 'title': 'tbp1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8f84199c-2d54-4646-9233-840b8f6ea228', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF844RXY/ 9985724 Kevin White, UChicago 8cc5d96480aa4a431271e61289a878ca https://www.encodeproject.org/files/ENCFF923CHX/@@download/ENCFF923CHX.bigWig released s3://encode-public/2018/03/01/11997dda-040d-4d78-bbbc-a718e0d93b85/ENCFF923CHX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF499QTJ fastq fastq reads ENCSR746QSR Control ChIP-seq /fly-donors/ENCDO663POI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41042/'], '@type': ['Target', 'Item'], 'name': 'CG9797-dmelanogaster', 'label': 'CG9797', '@id': '/targets/CG9797-dmelanogaster/', 'title': 'CG9797 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68d51251-73a9-4f3c-9361-f9f77854634f', 'status': 'released'} dm3 3R 4545641 4568888 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 731356713 Kevin White, UChicago c9473112ee4bdd845cf698621f6f64fc https://www.encodeproject.org/files/ENCFF499QTJ/@@download/ENCFF499QTJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF970LUK/ released s3://encode-public/2018/02/01/c696375f-9c7f-4430-81e9-0fc121ac6ce0/ENCFF499QTJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF125ZDM bam bam alignments dm6 ENCSR746QSR Control ChIP-seq /fly-donors/ENCDO663POI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41042/'], '@type': ['Target', 'Item'], 'name': 'CG9797-dmelanogaster', 'label': 'CG9797', '@id': '/targets/CG9797-dmelanogaster/', 'title': 'CG9797 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68d51251-73a9-4f3c-9361-f9f77854634f', 'status': 'released'} dm3 3R 4545641 4568888 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF499QTJ/, /files/ENCFF479RCH/ 975801670 Kevin White, UChicago 19ecea0eb7e63bfaf61963f51c0d3447 https://www.encodeproject.org/files/ENCFF125ZDM/@@download/ENCFF125ZDM.bam released s3://encode-public/2018/02/02/a905b0bd-b4aa-4471-9f6e-c47b70b47737/ENCFF125ZDM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF511WOT bigWig bigWig read-depth normalized signal dm6 ENCSR746QSR Control ChIP-seq /fly-donors/ENCDO663POI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41042/'], '@type': ['Target', 'Item'], 'name': 'CG9797-dmelanogaster', 'label': 'CG9797', '@id': '/targets/CG9797-dmelanogaster/', 'title': 'CG9797 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68d51251-73a9-4f3c-9361-f9f77854634f', 'status': 'released'} dm3 3R 4545641 4568888 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF125ZDM/ 17597121 Kevin White, UChicago aa97ff5b52feec793abaade5e4c7e30d https://www.encodeproject.org/files/ENCFF511WOT/@@download/ENCFF511WOT.bigWig released s3://encode-public/2018/02/02/5e453555-5f2a-43b0-8023-08a6d6175388/ENCFF511WOT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF427QKI bigWig bigWig signal of unique reads dm6 ENCSR746QSR Control ChIP-seq /fly-donors/ENCDO663POI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41042/'], '@type': ['Target', 'Item'], 'name': 'CG9797-dmelanogaster', 'label': 'CG9797', '@id': '/targets/CG9797-dmelanogaster/', 'title': 'CG9797 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68d51251-73a9-4f3c-9361-f9f77854634f', 'status': 'released'} dm3 3R 4545641 4568888 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF125ZDM/ 17579836 Kevin White, UChicago eba09815b07cc44385ec57f05ef2dba3 https://www.encodeproject.org/files/ENCFF427QKI/@@download/ENCFF427QKI.bigWig released s3://encode-public/2018/02/02/c52770f2-ba0f-4b05-b3c0-25f7c834b6cc/ENCFF427QKI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF271CIF fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 554141203 Bradley Bernstein, Broad 6e47eb4724e76caf5aec841290119c64 SRA:SRR16812712 https://www.encodeproject.org/files/ENCFF271CIF/@@download/ENCFF271CIF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/b3ab052b-b78a-49e7-8c45-7b5bb20c52d5/ENCFF271CIF.fastq.gz ENCFF214ZUZ fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 551708281 Bradley Bernstein, Broad 1d03faaff5bd43e5c0fe9097bcc601c2 SRA:SRR16812713 https://www.encodeproject.org/files/ENCFF214ZUZ/@@download/ENCFF214ZUZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/9f17eab2-f92c-444b-8780-0d9ebfbb7774/ENCFF214ZUZ.fastq.gz ENCFF416UJV fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 558098395 Bradley Bernstein, Broad 77e897b8deef89bbc9d80ab759ea7b9d SRA:SRR16812716 https://www.encodeproject.org/files/ENCFF416UJV/@@download/ENCFF416UJV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/3758ba3f-af7d-474e-a1c4-8c4b1092c40d/ENCFF416UJV.fastq.gz ENCFF142DWK fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 553597873 Bradley Bernstein, Broad 5ad9565bfd2851c4cfe0e8a8621c4c6e SRA:SRR16812717 https://www.encodeproject.org/files/ENCFF142DWK/@@download/ENCFF142DWK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/45f3011e-d121-446e-8052-9d1fb1c40e47/ENCFF142DWK.fastq.gz ENCFF945BZS fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 551555651 Bradley Bernstein, Broad 9a543bd28c6ab9a97fc157235e9dfa31 SRA:SRR16812718 https://www.encodeproject.org/files/ENCFF945BZS/@@download/ENCFF945BZS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/d34ec50a-5fbf-465b-a8a2-2f2168d7a3a1/ENCFF945BZS.fastq.gz ENCFF547BKQ fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 553736127 Bradley Bernstein, Broad 465006a1f52fdf255dda8cefbea3db6f SRA:SRR16812719 https://www.encodeproject.org/files/ENCFF547BKQ/@@download/ENCFF547BKQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/3c465510-c6a2-42ce-9013-793b474c6823/ENCFF547BKQ.fastq.gz ENCFF994CNY fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 553636278 Bradley Bernstein, Broad 37cf0ed246d28e9ba19541de0be0911e SRA:SRR16812714 https://www.encodeproject.org/files/ENCFF994CNY/@@download/ENCFF994CNY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/ad226bb6-19f0-4ad7-a32f-35df97bd6135/ENCFF994CNY.fastq.gz ENCFF793MKB fastq fastq reads ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 559065507 Bradley Bernstein, Broad 0480f449368481d1c85b8089996468ef SRA:SRR16812715 https://www.encodeproject.org/files/ENCFF793MKB/@@download/ENCFF793MKB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/39f8216b-6f1c-48b0-85aa-7a9484469a25/ENCFF793MKB.fastq.gz ENCFF110DVC bam bam unfiltered alignments GRCh38 ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF945BZS/, /files/ENCFF142DWK/, /files/ENCFF110MCL/, /files/ENCFF214ZUZ/, /files/ENCFF547BKQ/, /files/ENCFF271CIF/, /files/ENCFF994CNY/, /files/ENCFF416UJV/, /files/ENCFF793MKB/ 4233873666 ENCODE Processing Pipeline aaef07f55fbe1daa496b527c5592acf6 https://www.encodeproject.org/files/ENCFF110DVC/@@download/ENCFF110DVC.bam released s3://encode-public/2021/09/14/fc0b9a5f-7384-4d44-b3c5-72f87400589a/ENCFF110DVC.bam ENCODE4 v1.8.0 GRCh38 released ENCFF715TMX bam bam alignments GRCh38 ENCSR629GZZ Control ChIP-seq /human-donors/ENCDO080EZF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF945BZS/, /files/ENCFF142DWK/, /files/ENCFF110MCL/, /files/ENCFF214ZUZ/, /files/ENCFF547BKQ/, /files/ENCFF271CIF/, /files/ENCFF994CNY/, /files/ENCFF416UJV/, /files/ENCFF793MKB/ 3547746223 ENCODE Processing Pipeline a343338f55be63a1ae927d1f18656b2a https://www.encodeproject.org/files/ENCFF715TMX/@@download/ENCFF715TMX.bam released s3://encode-public/2021/09/14/80e36c31-99a3-4117-84a7-abe2a673e54b/ENCFF715TMX.bam ENCODE4 v1.8.0 GRCh38 released ENCFF276ZYK fastq fastq reads ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 988894345 Bradley Bernstein, Broad e982ede80463b3c7b5a28ca468373a2a SRA:SRR10049634 https://www.encodeproject.org/files/ENCFF276ZYK/@@download/ENCFF276ZYK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/3203589e-2079-4e20-80db-49031de01fbe/ENCFF276ZYK.fastq.gz ENCFF915CLU fastq fastq reads ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 962844287 Bradley Bernstein, Broad 191269e2f5ab515d291980db42d76bf7 SRA:SRR10049635 https://www.encodeproject.org/files/ENCFF915CLU/@@download/ENCFF915CLU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/3386bcf7-cea4-49ba-b80f-d3f1ac71bb08/ENCFF915CLU.fastq.gz ENCFF772RXF fastq fastq reads ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 1231044542 Bradley Bernstein, Broad 1122585d63058a6ec76c537784c8fb53 SRA:SRR10049636 https://www.encodeproject.org/files/ENCFF772RXF/@@download/ENCFF772RXF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/bf97b601-f267-46cc-9abf-80f7f73fb9b0/ENCFF772RXF.fastq.gz ENCFF640NXU fastq fastq reads ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 1187707433 Bradley Bernstein, Broad f6bf543de569e23182101fbf2899dcd0 SRA:SRR10049637 https://www.encodeproject.org/files/ENCFF640NXU/@@download/ENCFF640NXU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/0fa2be5b-1c99-48d5-9178-bfacda5c74e7/ENCFF640NXU.fastq.gz ENCFF212EFO bam bam unfiltered alignments hg19 ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF640NXU/, /files/ENCFF807MUK/, /files/ENCFF915CLU/, /files/ENCFF276ZYK/, /files/ENCFF772RXF/ 4073323836 ENCODE Processing Pipeline 879b3c8376bfc759761d7b7489166543 https://www.encodeproject.org/files/ENCFF212EFO/@@download/ENCFF212EFO.bam released s3://encode-public/2018/06/13/42122720-cb68-4e60-b4c5-d71ada0b60ef/ENCFF212EFO.bam ENCODE3 hg19 archived ENCFF838WFG bam bam alignments hg19 ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF640NXU/, /files/ENCFF807MUK/, /files/ENCFF915CLU/, /files/ENCFF276ZYK/, /files/ENCFF772RXF/ 3364352066 ENCODE Processing Pipeline 9d08bcea49217c13e7f3a7e54033e5ce https://www.encodeproject.org/files/ENCFF838WFG/@@download/ENCFF838WFG.bam released s3://encode-public/2018/06/13/1b30a65e-37e7-42df-9035-23ce6f524a91/ENCFF838WFG.bam ENCODE3 hg19 archived ENCFF828DFD bam bam unfiltered alignments GRCh38 ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF640NXU/, /files/ENCFF915CLU/, /files/ENCFF643CGH/, /files/ENCFF276ZYK/, /files/ENCFF772RXF/ 4084641514 ENCODE Processing Pipeline 0181d6ce0a31137c5109273aa6c0131c https://www.encodeproject.org/files/ENCFF828DFD/@@download/ENCFF828DFD.bam released s3://encode-public/2018/06/13/240ee568-7018-4b4c-bf77-535538c06e1b/ENCFF828DFD.bam ENCODE3 GRCh38 archived ENCFF981WUC bam bam alignments GRCh38 ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF640NXU/, /files/ENCFF915CLU/, /files/ENCFF643CGH/, /files/ENCFF276ZYK/, /files/ENCFF772RXF/ 3368579564 ENCODE Processing Pipeline ef509eed70ac7f5d74c36c9f6a6c3839 https://www.encodeproject.org/files/ENCFF981WUC/@@download/ENCFF981WUC.bam released s3://encode-public/2018/06/13/c8e3b774-0098-41bd-a271-4119d5bc261c/ENCFF981WUC.bam ENCODE3 GRCh38 archived ENCFF794QJK bam bam alignments GRCh38 ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF915CLU/, /files/ENCFF640NXU/, /files/ENCFF772RXF/, /files/ENCFF110MCL/, /files/ENCFF276ZYK/ 3436196350 ENCODE Processing Pipeline 836fd3e87576dcd5d838668bdddf3c66 https://www.encodeproject.org/files/ENCFF794QJK/@@download/ENCFF794QJK.bam released s3://encode-public/2020/09/19/2371e34e-0ba2-459b-b276-6c258e435c8b/ENCFF794QJK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF999QWA bam bam unfiltered alignments GRCh38 ENCSR750DLX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF915CLU/, /files/ENCFF640NXU/, /files/ENCFF772RXF/, /files/ENCFF110MCL/, /files/ENCFF276ZYK/ 4128245781 ENCODE Processing Pipeline f31bb898ceba66beacf5188e8ad35fc1 https://www.encodeproject.org/files/ENCFF999QWA/@@download/ENCFF999QWA.bam released s3://encode-public/2020/09/19/148f9412-f2c2-4d69-bf99-47e5cc803ed5/ENCFF999QWA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF584HYB fastq fastq reads ENCSR542XFG Control ChIP-seq /worm-donors/ENCDO672QWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185460/'], '@type': ['Target', 'Item'], 'name': 'hlh-17-celegans', 'label': 'hlh-17', '@id': '/targets/hlh-17-celegans/', 'title': 'hlh-17 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '45e8468a-06ab-489c-a45a-3a3db065f5c5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1451691589 Kevin White, UChicago 95f21740210a4e77a49026cee5232dff https://www.encodeproject.org/files/ENCFF584HYB/@@download/ENCFF584HYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/6f20b61c-8b74-4c69-83ea-cd951ac04779/ENCFF584HYB.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF679LJY bam bam alignments ce11 ENCSR542XFG Control ChIP-seq /worm-donors/ENCDO672QWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185460/'], '@type': ['Target', 'Item'], 'name': 'hlh-17-celegans', 'label': 'hlh-17', '@id': '/targets/hlh-17-celegans/', 'title': 'hlh-17 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '45e8468a-06ab-489c-a45a-3a3db065f5c5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF584HYB/, /files/ENCFF586MOL/ 1823465600 Kevin White, UChicago e30d5b197399fae6e9dfe45e346f1f8e https://www.encodeproject.org/files/ENCFF679LJY/@@download/ENCFF679LJY.bam released s3://encode-public/2018/05/31/611f0f80-5ca1-41c2-8dd2-63435e23105f/ENCFF679LJY.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF854MXO bigWig bigWig read-depth normalized signal ce11 ENCSR542XFG Control ChIP-seq /worm-donors/ENCDO672QWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185460/'], '@type': ['Target', 'Item'], 'name': 'hlh-17-celegans', 'label': 'hlh-17', '@id': '/targets/hlh-17-celegans/', 'title': 'hlh-17 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '45e8468a-06ab-489c-a45a-3a3db065f5c5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679LJY/ 9956165 Kevin White, UChicago 08cc245b3a08df4ac828ee102d4c9d28 https://www.encodeproject.org/files/ENCFF854MXO/@@download/ENCFF854MXO.bigWig released s3://encode-public/2018/05/31/9221e662-3319-4021-9342-2cf29e2f7c55/ENCFF854MXO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF046BEP bigWig bigWig signal of unique reads ce11 ENCSR542XFG Control ChIP-seq /worm-donors/ENCDO672QWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185460/'], '@type': ['Target', 'Item'], 'name': 'hlh-17-celegans', 'label': 'hlh-17', '@id': '/targets/hlh-17-celegans/', 'title': 'hlh-17 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '45e8468a-06ab-489c-a45a-3a3db065f5c5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679LJY/ 10005727 Kevin White, UChicago e9e5bc59b026ef1af42e34f52ddbefe6 https://www.encodeproject.org/files/ENCFF046BEP/@@download/ENCFF046BEP.bigWig released s3://encode-public/2018/05/31/bb2fe543-62ba-4e1c-9148-b103f4164063/ENCFF046BEP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF768QOK fastq fastq reads ENCSR020QUJ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 single-ended 3114978663 Richard Myers, HAIB 51eabb4d5ab2fa7c91a2675db0d9db5b SRA:SRR14103223 https://www.encodeproject.org/files/ENCFF768QOK/@@download/ENCFF768QOK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2018/04/19/e0d9ff7c-ddf8-4179-9d08-0f95019959f8/ENCFF768QOK.fastq.gz ENCFF657NDS bam bam alignments GRCh38 ENCSR020QUJ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF768QOK/ 1733819622 ENCODE Processing Pipeline 72fa5071cc36bc8d3780321b44f55901 https://www.encodeproject.org/files/ENCFF657NDS/@@download/ENCFF657NDS.bam released s3://encode-public/2020/04/20/f6b0a78a-83de-4e0c-a8c7-fac99b37e88c/ENCFF657NDS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF757RZO bam bam unfiltered alignments GRCh38 ENCSR020QUJ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF768QOK/ 3160835759 ENCODE Processing Pipeline 4889975ad0e598db04d3a23720f057a9 https://www.encodeproject.org/files/ENCFF757RZO/@@download/ENCFF757RZO.bam released s3://encode-public/2020/04/20/48a4e273-4503-4913-b99e-b4b0508d2e2f/ENCFF757RZO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF525PBR bam bam unfiltered alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF838SXU/, /files/ENCFF932ZIN/, /files/ENCFF110MCL/ 3911977570 ENCODE Processing Pipeline 24212e0b84f1f7d740c6e89458b1499a https://www.encodeproject.org/files/ENCFF525PBR/@@download/ENCFF525PBR.bam released s3://encode-public/2020/09/19/60a5a922-812d-4f3e-8432-69047bdb0dac/ENCFF525PBR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF562YGO bam bam alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF838SXU/, /files/ENCFF932ZIN/, /files/ENCFF110MCL/ 3223219382 ENCODE Processing Pipeline 4361979e85437e53a04062f087bc260e https://www.encodeproject.org/files/ENCFF562YGO/@@download/ENCFF562YGO.bam released s3://encode-public/2020/09/19/7d868b88-637b-4a69-90cf-0be8c762798a/ENCFF562YGO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF932ZIN fastq fastq reads ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 2097318012 Bradley Bernstein, Broad 301eae26d14d8823b8416f8adca40feb SRA:SRR10049662 https://www.encodeproject.org/files/ENCFF932ZIN/@@download/ENCFF932ZIN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/15a44332-b245-41a5-856e-c4ce8d7d89a0/ENCFF932ZIN.fastq.gz ENCFF838SXU fastq fastq reads ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 2062115810 Bradley Bernstein, Broad 209c8e593ec261554b4b37b1932f0591 SRA:SRR10049663 https://www.encodeproject.org/files/ENCFF838SXU/@@download/ENCFF838SXU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/8e604ca9-8dd3-404e-b710-5302e1e25e96/ENCFF838SXU.fastq.gz ENCFF863PQO bam bam alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF838SXU/, /files/ENCFF643CGH/, /files/ENCFF932ZIN/ 3161869496 ENCODE Processing Pipeline 8f52a55724f528a29e4e36830aafc769 https://www.encodeproject.org/files/ENCFF863PQO/@@download/ENCFF863PQO.bam released s3://encode-public/2018/06/13/393ed565-063e-475c-b94a-b4e10b36b3ab/ENCFF863PQO.bam ENCODE3 GRCh38 archived ENCFF405BBC bam bam unfiltered alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF838SXU/, /files/ENCFF643CGH/, /files/ENCFF932ZIN/ 3869950547 ENCODE Processing Pipeline 447ff634f649116952c2486aab456955 https://www.encodeproject.org/files/ENCFF405BBC/@@download/ENCFF405BBC.bam released s3://encode-public/2018/06/13/93d78d6d-8b8d-49e3-b04a-a0aa39f5a290/ENCFF405BBC.bam ENCODE3 GRCh38 archived ENCFF919XFF bam bam alignments hg19 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF619MFX/, /files/ENCFF020GKF/ 2782776755 ENCODE Processing Pipeline b8a9bc8592940cdfecdedc88ebb8a47c https://www.encodeproject.org/files/ENCFF919XFF/@@download/ENCFF919XFF.bam released s3://encode-public/2018/06/13/cfbb7745-5354-40ad-b96e-6e8ede7902f8/ENCFF919XFF.bam ENCODE3 hg19 archived ENCFF584AOV bam bam unfiltered alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF619MFX/, /files/ENCFF020GKF/ 3355614805 ENCODE Processing Pipeline 8b3b1238c4b453401f00a758ecd5334e https://www.encodeproject.org/files/ENCFF584AOV/@@download/ENCFF584AOV.bam released s3://encode-public/2018/06/13/84ee7bfe-6c19-44f3-90f1-41cf904f443b/ENCFF584AOV.bam ENCODE3 GRCh38 archived ENCFF400VJM bam bam alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF619MFX/, /files/ENCFF020GKF/ 2786292358 ENCODE Processing Pipeline df375417b9dd8f7a94418d6e70501fec https://www.encodeproject.org/files/ENCFF400VJM/@@download/ENCFF400VJM.bam released s3://encode-public/2018/06/13/4a69b666-5a66-418a-a04b-3212d264a4aa/ENCFF400VJM.bam ENCODE3 GRCh38 archived ENCFF924INN bam bam unfiltered alignments hg19 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF619MFX/, /files/ENCFF020GKF/ 3347413890 ENCODE Processing Pipeline 82fad970b6807d1ed7615e8cf9f7c870 https://www.encodeproject.org/files/ENCFF924INN/@@download/ENCFF924INN.bam released s3://encode-public/2018/06/13/4a30fb31-2546-4773-bfb9-7269ec864fb7/ENCFF924INN.bam ENCODE3 hg19 archived ENCFF675DSM bam bam unfiltered alignments hg19 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF838SXU/, /files/ENCFF807MUK/, /files/ENCFF932ZIN/ 3861741114 ENCODE Processing Pipeline 47ac890782ce15cd324576a323017382 https://www.encodeproject.org/files/ENCFF675DSM/@@download/ENCFF675DSM.bam released s3://encode-public/2018/06/13/99773475-d7b2-4b85-8473-14feac8ae72e/ENCFF675DSM.bam ENCODE3 hg19 archived ENCFF372YKJ bam bam alignments hg19 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF838SXU/, /files/ENCFF807MUK/, /files/ENCFF932ZIN/ 3157594594 ENCODE Processing Pipeline d54029ebf7552de46e4fc63cc920455d https://www.encodeproject.org/files/ENCFF372YKJ/@@download/ENCFF372YKJ.bam released s3://encode-public/2018/06/13/165fb707-f2bf-4603-aa34-72234eddc9de/ENCFF372YKJ.bam ENCODE3 hg19 archived ENCFF619MFX fastq fastq reads ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1786476883 Bradley Bernstein, Broad e2f209c565ed2633ebaeea14a7785939 SRA:SRR10049664 https://www.encodeproject.org/files/ENCFF619MFX/@@download/ENCFF619MFX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/7489ae73-f759-4e82-8467-a9f2646fbbb7/ENCFF619MFX.fastq.gz ENCFF020GKF fastq fastq reads ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1774695291 Bradley Bernstein, Broad adceb205d6f80d5ce798acad41ddb350 SRA:SRR10049665 https://www.encodeproject.org/files/ENCFF020GKF/@@download/ENCFF020GKF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/cbd4c6f0-19a4-4657-b890-8e4e21f10f29/ENCFF020GKF.fastq.gz ENCFF004ZFA bam bam unfiltered alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF619MFX/, /files/ENCFF110MCL/, /files/ENCFF020GKF/ 3387026616 ENCODE Processing Pipeline 96b00b7e7d1a5e36c4b53ee8d310cdae https://www.encodeproject.org/files/ENCFF004ZFA/@@download/ENCFF004ZFA.bam released s3://encode-public/2020/09/19/e78526dd-085d-4e19-8677-64bebfb73a81/ENCFF004ZFA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF400AQD bam bam alignments GRCh38 ENCSR819JOI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF619MFX/, /files/ENCFF110MCL/, /files/ENCFF020GKF/ 2841484935 ENCODE Processing Pipeline eb40442cff2b13eee5132512cbb38ec3 https://www.encodeproject.org/files/ENCFF400AQD/@@download/ENCFF400AQD.bam released s3://encode-public/2020/09/19/a2e88c77-e2e7-4b51-ba7d-d7dc22d05c6b/ENCFF400AQD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF290HIO fastq fastq reads ENCSR517FPJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ESR1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2099/'], '@type': ['Target', 'Item'], 'label': 'ESR1', 'title': 'ESR1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b8217ba5-135b-45bc-80a5-0ad4d88a432f', 'schema_version': '14', 'name': 'ESR1-human', '@id': '/targets/ESR1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF210HIM/ 2393114697 Michael Snyder, Stanford 9977b4fa795c4d25a88b54e75ac705c2 https://www.encodeproject.org/files/ENCFF290HIO/@@download/ENCFF290HIO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/dcddbf93-48eb-4628-94a4-071e053ced89/ENCFF290HIO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF210HIM fastq fastq reads ENCSR517FPJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ESR1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2099/'], '@type': ['Target', 'Item'], 'label': 'ESR1', 'title': 'ESR1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b8217ba5-135b-45bc-80a5-0ad4d88a432f', 'schema_version': '14', 'name': 'ESR1-human', '@id': '/targets/ESR1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF290HIO/ 2556333468 Michael Snyder, Stanford 7970fba7ead6b9291eac579886cc05f7 https://www.encodeproject.org/files/ENCFF210HIM/@@download/ENCFF210HIM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/de683429-578a-4bf1-8903-679d7d62bc37/ENCFF210HIM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF444JMD bam bam alignments GRCh38 ENCSR517FPJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ESR1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2099/'], '@type': ['Target', 'Item'], 'label': 'ESR1', 'title': 'ESR1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b8217ba5-135b-45bc-80a5-0ad4d88a432f', 'schema_version': '14', 'name': 'ESR1-human', '@id': '/targets/ESR1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF290HIO/, /files/ENCFF210HIM/ 3337775887 ENCODE Processing Pipeline 1b5378627a89583ec81a72d65dccb133 https://www.encodeproject.org/files/ENCFF444JMD/@@download/ENCFF444JMD.bam released s3://encode-public/2020/04/20/1c825e54-5ab5-41f0-9d72-2e393439a961/ENCFF444JMD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF151POO bam bam unfiltered alignments GRCh38 ENCSR517FPJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ESR1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2099/'], '@type': ['Target', 'Item'], 'label': 'ESR1', 'title': 'ESR1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b8217ba5-135b-45bc-80a5-0ad4d88a432f', 'schema_version': '14', 'name': 'ESR1-human', '@id': '/targets/ESR1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF290HIO/, /files/ENCFF210HIM/ 4567008636 ENCODE Processing Pipeline 3a874050c2f4da2efc436dbb77b6c4ea https://www.encodeproject.org/files/ENCFF151POO/@@download/ENCFF151POO.bam released s3://encode-public/2020/04/20/ba6e0072-c7ce-4e28-aca8-2c0929ae4605/ENCFF151POO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF099CHX fastq fastq reads ENCSR247NVH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-810'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147929/'], '@type': ['Target', 'Item'], 'name': 'ZNF565-human', 'label': 'ZNF565', '@id': '/targets/ZNF565-human/', 'title': 'ZNF565 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4ab5b6-b3a4-4fa2-8a30-b68667650a10', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF558IPU/ 3084075526 Michael Snyder, Stanford ef664269ec3913d126b7c797ffb09ef7 https://www.encodeproject.org/files/ENCFF099CHX/@@download/ENCFF099CHX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/5827f5b2-2f61-46c2-af77-95a09452e3e7/ENCFF099CHX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF558IPU fastq fastq reads ENCSR247NVH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-810'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147929/'], '@type': ['Target', 'Item'], 'name': 'ZNF565-human', 'label': 'ZNF565', '@id': '/targets/ZNF565-human/', 'title': 'ZNF565 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4ab5b6-b3a4-4fa2-8a30-b68667650a10', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF099CHX/ 2787530804 Michael Snyder, Stanford 202f06eb7693220e6db30da42fab463d https://www.encodeproject.org/files/ENCFF558IPU/@@download/ENCFF558IPU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/35c17b61-f7be-400a-92c9-5d8fa07920a9/ENCFF558IPU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF475RIX bam bam alignments GRCh38 ENCSR247NVH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-810'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147929/'], '@type': ['Target', 'Item'], 'name': 'ZNF565-human', 'label': 'ZNF565', '@id': '/targets/ZNF565-human/', 'title': 'ZNF565 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4ab5b6-b3a4-4fa2-8a30-b68667650a10', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF558IPU/, /files/ENCFF099CHX/ 3348016376 ENCODE Processing Pipeline 260732f522c788e9e2b0d14fd2f2aebc https://www.encodeproject.org/files/ENCFF475RIX/@@download/ENCFF475RIX.bam released s3://encode-public/2020/04/20/6a50e937-556c-4878-9272-69e6198dfd3d/ENCFF475RIX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF640QES bam bam unfiltered alignments GRCh38 ENCSR247NVH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-810'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147929/'], '@type': ['Target', 'Item'], 'name': 'ZNF565-human', 'label': 'ZNF565', '@id': '/targets/ZNF565-human/', 'title': 'ZNF565 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4ab5b6-b3a4-4fa2-8a30-b68667650a10', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF558IPU/, /files/ENCFF099CHX/ 5157686823 ENCODE Processing Pipeline b6a2b0d5d04aa6bd779781be2b389cde https://www.encodeproject.org/files/ENCFF640QES/@@download/ENCFF640QES.bam released s3://encode-public/2020/04/20/16a7b105-e9fd-470a-b0fd-ea28f64ae8df/ENCFF640QES.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF405EFD fastq fastq reads ENCSR517WHP Control ChIP-seq /worm-donors/ENCDO441DRT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172676/'], '@type': ['Target', 'Item'], 'name': 'tlf-1-celegans', 'label': 'tlf-1', '@id': '/targets/tlf-1-celegans/', 'title': 'tlf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7a354061-b5fa-444d-85c4-095d9deb206f', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1008848521 Kevin White, UChicago 5e0019621db2e260c845d78bf1d1fdce https://www.encodeproject.org/files/ENCFF405EFD/@@download/ENCFF405EFD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/06/11/92d0c7a2-b939-4274-97e0-5b2269e95c80/ENCFF405EFD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF209XRF bam bam alignments ce11 ENCSR517WHP Control ChIP-seq /worm-donors/ENCDO441DRT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172676/'], '@type': ['Target', 'Item'], 'name': 'tlf-1-celegans', 'label': 'tlf-1', '@id': '/targets/tlf-1-celegans/', 'title': 'tlf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7a354061-b5fa-444d-85c4-095d9deb206f', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF405EFD/, /files/ENCFF586MOL/ 1311536823 Kevin White, UChicago b00d54224361d1327b91ff1343c4fa28 https://www.encodeproject.org/files/ENCFF209XRF/@@download/ENCFF209XRF.bam released s3://encode-public/2018/06/11/a2370a4e-9942-4696-a9cd-3d69c821bf93/ENCFF209XRF.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF954GJE bigWig bigWig read-depth normalized signal ce11 ENCSR517WHP Control ChIP-seq /worm-donors/ENCDO441DRT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172676/'], '@type': ['Target', 'Item'], 'name': 'tlf-1-celegans', 'label': 'tlf-1', '@id': '/targets/tlf-1-celegans/', 'title': 'tlf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7a354061-b5fa-444d-85c4-095d9deb206f', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF209XRF/ 9938455 Kevin White, UChicago f448bf1b60a6ffbcca6165ec97d83bc3 https://www.encodeproject.org/files/ENCFF954GJE/@@download/ENCFF954GJE.bigWig released s3://encode-public/2018/06/11/39ba6008-8a71-43f8-893c-58f46e2c16a7/ENCFF954GJE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF757NJJ bigWig bigWig signal of unique reads ce11 ENCSR517WHP Control ChIP-seq /worm-donors/ENCDO441DRT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172676/'], '@type': ['Target', 'Item'], 'name': 'tlf-1-celegans', 'label': 'tlf-1', '@id': '/targets/tlf-1-celegans/', 'title': 'tlf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7a354061-b5fa-444d-85c4-095d9deb206f', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF209XRF/ 10010636 Kevin White, UChicago d624326f80bf6a1a4fc85bbb893cf118 https://www.encodeproject.org/files/ENCFF757NJJ/@@download/ENCFF757NJJ.bigWig released s3://encode-public/2018/06/11/e227d322-cd2f-4849-8c54-8577dc67a5a0/ENCFF757NJJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF517VVJ fastq fastq reads ENCSR790UBY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF310CBT/ 2706414679 Michael Snyder, Stanford f81f59ecf90300cb24e4b1163a710c32 https://www.encodeproject.org/files/ENCFF517VVJ/@@download/ENCFF517VVJ.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/09/29/2b5ff929-4127-4e5e-9034-a34e53e1f9d3/ENCFF517VVJ.fastq.gz mild to moderate bottlenecking ENCFF310CBT fastq fastq reads ENCSR790UBY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF517VVJ/ 2778388443 Michael Snyder, Stanford 38e27bb846a70c9f633afbb7eb546ed6 https://www.encodeproject.org/files/ENCFF310CBT/@@download/ENCFF310CBT.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/09/29/7b529e28-c9ea-499a-aa8b-203c22a8b339/ENCFF310CBT.fastq.gz mild to moderate bottlenecking ENCFF553WJT bam bam unfiltered alignments GRCh38 ENCSR790UBY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF517VVJ/, /files/ENCFF310CBT/, /files/ENCFF110MCL/ 4962195793 ENCODE Processing Pipeline 7147be08d824bebd2eff2e061d09400f https://www.encodeproject.org/files/ENCFF553WJT/@@download/ENCFF553WJT.bam released s3://encode-public/2021/10/22/9a1a6ae3-dac1-45b0-a99e-55ab570e468a/ENCFF553WJT.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF750NUP bam bam alignments GRCh38 ENCSR790UBY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF517VVJ/, /files/ENCFF310CBT/, /files/ENCFF110MCL/ 3521219691 ENCODE Processing Pipeline 5732528bb34604e8bdd3366b46edc082 https://www.encodeproject.org/files/ENCFF750NUP/@@download/ENCFF750NUP.bam released s3://encode-public/2021/10/22/c90169b2-25ef-4bee-b368-eb680d4d170a/ENCFF750NUP.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF983YHQ fastq fastq reads ENCSR577XMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF912IVG/ 3160731302 Michael Snyder, Stanford 7186892c08e18e097774d83d5fd92a6d https://www.encodeproject.org/files/ENCFF983YHQ/@@download/ENCFF983YHQ.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/6855da0e-1653-4923-aa17-007e141c3874/ENCFF983YHQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF912IVG fastq fastq reads ENCSR577XMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF983YHQ/ 3309487946 Michael Snyder, Stanford 92a49db05efb869ead4b307c56bcb211 https://www.encodeproject.org/files/ENCFF912IVG/@@download/ENCFF912IVG.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/7f7610fa-5231-457a-8487-424c0796ae56/ENCFF912IVG.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF848BWX bam bam unfiltered alignments GRCh38 ENCSR577XMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF983YHQ/, /files/ENCFF110MCL/, /files/ENCFF912IVG/ 5318949526 ENCODE Processing Pipeline ed9897bc69073711cb982d7376f6ea11 https://www.encodeproject.org/files/ENCFF848BWX/@@download/ENCFF848BWX.bam released s3://encode-public/2022/03/19/de9c1fdf-db2c-46f4-8062-17bb1cc41c3a/ENCFF848BWX.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF293UVC bam bam alignments GRCh38 ENCSR577XMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF983YHQ/, /files/ENCFF110MCL/, /files/ENCFF912IVG/ 3720489440 ENCODE Processing Pipeline 295e613efe31435d3b1f0e95c51656d0 https://www.encodeproject.org/files/ENCFF293UVC/@@download/ENCFF293UVC.bam released s3://encode-public/2022/03/19/cb4dbd04-93ce-446d-89b6-0db59d5e58e5/ENCFF293UVC.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF170QTH fastq fastq reads ENCSR095URQ Control ChIP-seq /worm-donors/ENCDO944KSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191703/'], '@type': ['Target', 'Item'], 'name': 'lin-32-celegans', 'label': 'lin-32', '@id': '/targets/lin-32-celegans/', 'title': 'lin-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31d3e312-7b3e-49d2-9f6c-5408d969929a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 522731844 Kevin White, UChicago dd35f9ff167db518050cae8dbd872bc0 https://www.encodeproject.org/files/ENCFF170QTH/@@download/ENCFF170QTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/2c697886-d9c0-4716-8f55-c8457d0b5795/ENCFF170QTH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF741WYH bam bam alignments ce11 ENCSR095URQ Control ChIP-seq /worm-donors/ENCDO944KSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191703/'], '@type': ['Target', 'Item'], 'name': 'lin-32-celegans', 'label': 'lin-32', '@id': '/targets/lin-32-celegans/', 'title': 'lin-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31d3e312-7b3e-49d2-9f6c-5408d969929a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF170QTH/, /files/ENCFF586MOL/ 677722521 Kevin White, UChicago 438b4af759cc8396eaf1bcef8e06bb35 https://www.encodeproject.org/files/ENCFF741WYH/@@download/ENCFF741WYH.bam released s3://encode-public/2018/05/31/0ccc5421-fd8b-40fa-98d5-7272a4a2eb75/ENCFF741WYH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF426VUX bigWig bigWig read-depth normalized signal ce11 ENCSR095URQ Control ChIP-seq /worm-donors/ENCDO944KSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191703/'], '@type': ['Target', 'Item'], 'name': 'lin-32-celegans', 'label': 'lin-32', '@id': '/targets/lin-32-celegans/', 'title': 'lin-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31d3e312-7b3e-49d2-9f6c-5408d969929a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF741WYH/ 9957961 Kevin White, UChicago b6ffee2791dac687be9cd7b4c4b1508b https://www.encodeproject.org/files/ENCFF426VUX/@@download/ENCFF426VUX.bigWig released s3://encode-public/2018/05/31/9e32bacf-c03d-47a3-babd-e68dde113338/ENCFF426VUX.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF482QYM bigWig bigWig signal of unique reads ce11 ENCSR095URQ Control ChIP-seq /worm-donors/ENCDO944KSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191703/'], '@type': ['Target', 'Item'], 'name': 'lin-32-celegans', 'label': 'lin-32', '@id': '/targets/lin-32-celegans/', 'title': 'lin-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31d3e312-7b3e-49d2-9f6c-5408d969929a', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF741WYH/ 9942407 Kevin White, UChicago 5fcf82230178c7b46c44673820bf00ea 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alignments hg19 ENCSR828WYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZVJ/ 687492964 ENCODE Processing Pipeline 8720c272a05dba0402b5c4465fb74335 https://www.encodeproject.org/files/ENCFF647LGE/@@download/ENCFF647LGE.bam released s3://encode-public/2016/11/15/5e7b0ab2-ca19-44ec-9590-5594bc945f18/ENCFF647LGE.bam ENCODE3 hg19 archived low read depth, low read length ENCFF693PYF bam bam unfiltered alignments hg19 ENCSR828WYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZVJ/ 991380640 ENCODE Processing Pipeline b5da393b3dd11f0b80420100ce057667 https://www.encodeproject.org/files/ENCFF693PYF/@@download/ENCFF693PYF.bam released s3://encode-public/2016/11/15/2cfc03ad-7d37-4ff7-a7c7-31bca06fe8f7/ENCFF693PYF.bam ENCODE3 hg19 archived low read depth, low read length ENCFF367OVV bam bam unfiltered alignments GRCh38 ENCSR828WYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 1 1_1 36 /files/ENCFF000ZVJ/, /files/ENCFF110MCL/ 974059884 ENCODE Processing Pipeline 3b9c46e9cc47ac85237efafebe0a0887 https://www.encodeproject.org/files/ENCFF367OVV/@@download/ENCFF367OVV.bam released s3://encode-public/2020/10/27/68b22169-f916-4d35-b85f-d4684dd22e7a/ENCFF367OVV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF735BZK bam bam alignments GRCh38 ENCSR828WYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 1 1_1 36 /files/ENCFF000ZVJ/, /files/ENCFF110MCL/ 746024703 ENCODE Processing Pipeline 49e2f11240809933be9710ceb6a35f1e https://www.encodeproject.org/files/ENCFF735BZK/@@download/ENCFF735BZK.bam released s3://encode-public/2020/10/27/6fab03b9-45a3-4b87-9478-4293b5e038a4/ENCFF735BZK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF691PDN fastq fastq reads ENCSR436NLU Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 907063741 Bradley Bernstein, Broad ff1ad267d07c2af412a9609220d9fb39 SRA:SRR14103547 https://www.encodeproject.org/files/ENCFF691PDN/@@download/ENCFF691PDN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/84aa4e63-4f13-4011-9f8a-ffee003d5a0b/ENCFF691PDN.fastq.gz ENCFF072JYN fastq fastq reads ENCSR436NLU Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 938878045 Bradley Bernstein, Broad 519f9a679104cff77ed75b7d654bea36 SRA:SRR14103548 https://www.encodeproject.org/files/ENCFF072JYN/@@download/ENCFF072JYN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/504cf1a2-6f7b-4b29-b6c8-197b409b20dc/ENCFF072JYN.fastq.gz ENCFF988MHY fastq fastq reads ENCSR436NLU Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 816585380 Bradley Bernstein, Broad add51f715e80fb2c0eec8c86dd399452 SRA:SRR14103549 https://www.encodeproject.org/files/ENCFF988MHY/@@download/ENCFF988MHY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/4e831f06-6bcc-46fb-9989-d96f9555c2ef/ENCFF988MHY.fastq.gz ENCFF542GMC fastq fastq reads ENCSR436NLU Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 773832717 Bradley Bernstein, Broad 1d65e87694151ec4c78ff63a38d4d9bf SRA:SRR14103550 https://www.encodeproject.org/files/ENCFF542GMC/@@download/ENCFF542GMC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/9133c4c4-0d58-46e4-ac34-60d90bc736a6/ENCFF542GMC.fastq.gz ENCFF429WJB bam bam alignments GRCh38 ENCSR436NLU Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF988MHY/, /files/ENCFF691PDN/, /files/ENCFF542GMC/, /files/ENCFF072JYN/, /files/ENCFF110MCL/ 2696291829 ENCODE Processing Pipeline 5b192f48a4c5d0b9dc9d4718fc3ecfb3 https://www.encodeproject.org/files/ENCFF429WJB/@@download/ENCFF429WJB.bam released s3://encode-public/2020/07/19/63ba618e-ce74-4e02-91c1-66db95c290b3/ENCFF429WJB.bam ENCODE4 v1.5.0 GRCh38 released ENCFF880KJE bam bam unfiltered alignments GRCh38 ENCSR436NLU Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF988MHY/, /files/ENCFF691PDN/, /files/ENCFF542GMC/, /files/ENCFF072JYN/, /files/ENCFF110MCL/ 3352795094 ENCODE Processing Pipeline e47f34f032728e8eb0cb3402d8163386 https://www.encodeproject.org/files/ENCFF880KJE/@@download/ENCFF880KJE.bam released s3://encode-public/2020/07/19/f9052919-aa9b-4f5d-bb10-ef9656be0993/ENCFF880KJE.bam ENCODE4 v1.5.0 GRCh38 released ENCFF782RSD fastq fastq reads ENCSR621OKB Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1892620207 Bradley Bernstein, Broad f36fd67c666cf62351f4783f84d723ef SRA:SRR13804650 https://www.encodeproject.org/files/ENCFF782RSD/@@download/ENCFF782RSD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/38d1addd-6e76-47ff-a0a4-3f58c11ca476/ENCFF782RSD.fastq.gz ENCFF184FNT fastq fastq reads ENCSR621OKB Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1913321884 Bradley Bernstein, Broad 5684e1072b6077a1812290d3a0a38118 SRA:SRR13804651 https://www.encodeproject.org/files/ENCFF184FNT/@@download/ENCFF184FNT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/d6fe6f14-c06f-465a-a63b-1d22ad43f772/ENCFF184FNT.fastq.gz ENCFF898LKJ bam bam alignments GRCh38 ENCSR621OKB Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF782RSD/, /files/ENCFF184FNT/ 3043587066 ENCODE Processing Pipeline be18cc05a95a0672602e18479713ff96 https://www.encodeproject.org/files/ENCFF898LKJ/@@download/ENCFF898LKJ.bam released s3://encode-public/2020/07/19/96f94fb3-ac4c-4eab-a548-b483117b12eb/ENCFF898LKJ.bam ENCODE4 v1.5.0 GRCh38 released ENCFF668YQT bam bam unfiltered alignments GRCh38 ENCSR621OKB Control ChIP-seq /human-donors/ENCDO856JFL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF782RSD/, /files/ENCFF184FNT/ 3722751672 ENCODE Processing Pipeline 39d5405ad431a8639d7a8b3ddb310cc6 https://www.encodeproject.org/files/ENCFF668YQT/@@download/ENCFF668YQT.bam released s3://encode-public/2020/07/19/51025f6f-7d1a-4317-97c0-8606beae722f/ENCFF668YQT.bam ENCODE4 v1.5.0 GRCh38 released ENCFF137KSZ tagAlign tagAlign alignments hg19 ENCSR281NDN Control ChIP-seq CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 50832789 Anshul Kundaje, Stanford fa72746c8156d08569e88ebb77f8576f https://www.encodeproject.org/files/ENCFF137KSZ/@@download/ENCFF137KSZ.tagAlign.gz archived s3://encode-public/2016/02/11/d321037f-1c5f-497b-acfb-9beb5142a1c1/ENCFF137KSZ.tagAlign.gz Lab custom hg19 archived insufficient read depth ENCFF327CTC bam bam redacted unfiltered alignments hg19 ENCSR281NDN Control ChIP-seq /human-donors/ENCDO460ZVO/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 51 /files/ENCFF807MUK/, /files/ENCFF029HVF/, /files/ENCFF296NKV/ 131239249 ENCODE Processing Pipeline 03e3b4e4d05d4638bcc0e4fff10d9f9b https://www.encodeproject.org/files/ENCFF327CTC/@@download/ENCFF327CTC.bam released s3://encode-public/2018/01/30/a9a57a9e-da13-4f45-a734-d6606ba45bb1/ENCFF327CTC.bam ENCODE3 hg19 archived insufficient read depth ENCFF436AEZ bam bam redacted alignments hg19 ENCSR281NDN Control ChIP-seq /human-donors/ENCDO460ZVO/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 51 /files/ENCFF807MUK/, /files/ENCFF029HVF/, /files/ENCFF296NKV/ 93034542 ENCODE Processing Pipeline 0dcf7684e21b0c3c198e94db1cf273e3 https://www.encodeproject.org/files/ENCFF436AEZ/@@download/ENCFF436AEZ.bam released s3://encode-public/2018/01/30/87a0e758-6052-412f-9b2c-3cf48e51bafc/ENCFF436AEZ.bam ENCODE3 hg19 archived insufficient read depth ENCFF249FYF bam bam redacted unfiltered alignments GRCh38 ENCSR281NDN Control ChIP-seq /human-donors/ENCDO460ZVO/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 51 /files/ENCFF029HVF/, /files/ENCFF296NKV/, /files/ENCFF643CGH/ 132757603 ENCODE Processing Pipeline 88a38fbadd6c5710f20bc4283d88715a https://www.encodeproject.org/files/ENCFF249FYF/@@download/ENCFF249FYF.bam released s3://encode-public/2018/01/31/28246f7d-c48d-4e3d-a3db-a63d539abfae/ENCFF249FYF.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF927QDO bam bam redacted alignments GRCh38 ENCSR281NDN Control ChIP-seq /human-donors/ENCDO460ZVO/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 51 /files/ENCFF029HVF/, /files/ENCFF296NKV/, /files/ENCFF643CGH/ 93055491 ENCODE Processing Pipeline 11966d1f08301cd7522261a7cfc4e9a8 https://www.encodeproject.org/files/ENCFF927QDO/@@download/ENCFF927QDO.bam released s3://encode-public/2018/01/31/ffc4f889-c765-4440-8963-faf72d77af9f/ENCFF927QDO.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF183BQA bam bam redacted alignments GRCh38 ENCSR281NDN Control ChIP-seq /human-donors/ENCDO460ZVO/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 51 /files/ENCFF029HVF/, /files/ENCFF296NKV/, /files/ENCFF110MCL/ 353143187 ENCODE Processing Pipeline 7af0adca328ce53cb880994967500b80 https://www.encodeproject.org/files/ENCFF183BQA/@@download/ENCFF183BQA.bam released s3://encode-public/2021/01/27/4e883c29-79f3-418f-9cee-60730ba78ebe/ENCFF183BQA.bam ENCODE4 v1.7.0 GRCh38 released insufficient read depth ENCFF926XCT bam bam redacted alignments GRCh38 ENCSR281NDN Control ChIP-seq /human-donors/ENCDO460ZVO/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF296NKV/, /files/ENCFF110MCL/, /files/ENCFF029HVF/ 269411753 ENCODE Processing Pipeline 3ed66248541b3e173d775b2701f8cbbe https://www.encodeproject.org/files/ENCFF926XCT/@@download/ENCFF926XCT.bam released s3://encode-public/2021/02/12/353fbf0b-7155-4bf4-b7bf-4843f86fd219/ENCFF926XCT.bam ENCODE4 v1.7.0 GRCh38 released insufficient read depth ENCFF758FQH fastq fastq reads ENCSR785LQK Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2564260687 Bradley Bernstein, Broad b5b001c56bf7dc25524877277cfa7d02 SRA:SRR13803980 https://www.encodeproject.org/files/ENCFF758FQH/@@download/ENCFF758FQH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/345d4eff-4c13-4988-af02-baf15fe6cf52/ENCFF758FQH.fastq.gz ENCFF599QMS fastq fastq reads ENCSR785LQK Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2639167039 Bradley Bernstein, Broad 546158fc2215e082c4e0a1dddb4008c7 SRA:SRR13803981 https://www.encodeproject.org/files/ENCFF599QMS/@@download/ENCFF599QMS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/8bf13cd9-2503-4af0-ad6a-d674d283af57/ENCFF599QMS.fastq.gz ENCFF490CUM bam bam unfiltered alignments GRCh38 ENCSR785LQK Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF599QMS/, /files/ENCFF110MCL/, /files/ENCFF758FQH/ 4938259837 ENCODE Processing Pipeline beaef47158ab9f2c24c915f466b197e9 https://www.encodeproject.org/files/ENCFF490CUM/@@download/ENCFF490CUM.bam released s3://encode-public/2020/07/19/6faea6b0-5568-4179-82f9-c0b9320b8a4b/ENCFF490CUM.bam ENCODE4 v1.5.0 GRCh38 released ENCFF034OFE bam bam alignments GRCh38 ENCSR785LQK Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF599QMS/, /files/ENCFF110MCL/, /files/ENCFF758FQH/ 4002637584 ENCODE Processing Pipeline cbb162ba5d817761741ced0f560b38c3 https://www.encodeproject.org/files/ENCFF034OFE/@@download/ENCFF034OFE.bam released s3://encode-public/2020/07/19/66fbb068-77c8-4100-aa59-0f500dbf8b89/ENCFF034OFE.bam ENCODE4 v1.5.0 GRCh38 released ENCFF435FQR fastq fastq reads ENCSR799FDO Control ChIP-seq /worm-donors/ENCDO173ZSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 2360322556 Kevin White, UChicago d6c7e4ca77b55b8ddc215e658db45ef0 https://www.encodeproject.org/files/ENCFF435FQR/@@download/ENCFF435FQR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/4f3ed69b-f16a-4e56-b174-e25768160a4d/ENCFF435FQR.fastq.gz missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF150GLW bam bam alignments ce10 ENCSR799FDO Control ChIP-seq /worm-donors/ENCDO173ZSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF435FQR/ 3144099744 Kevin White, UChicago 78e6531897b4cc5f980d23382c9a011c https://www.encodeproject.org/files/ENCFF150GLW/@@download/ENCFF150GLW.bam released s3://encode-public/2017/10/06/fa2f464e-41fb-415f-b4f4-e4ae7ef1ae3a/ENCFF150GLW.bam Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF919TMX bam bam alignments ce11 ENCSR799FDO Control ChIP-seq /worm-donors/ENCDO173ZSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF435FQR/ 3146596379 Kevin White, UChicago 6202d8ff18d1e7f4613975873a0885e8 https://www.encodeproject.org/files/ENCFF919TMX/@@download/ENCFF919TMX.bam released s3://encode-public/2017/10/07/eec30b50-9715-4a73-95c2-b690ea99da37/ENCFF919TMX.bam Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF986PEP bigWig bigWig read-depth normalized signal ce10 ENCSR799FDO Control ChIP-seq /worm-donors/ENCDO173ZSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF150GLW/ 9925722 Kevin White, UChicago 68b3254c0cb2e0aad76e01021e90c945 https://www.encodeproject.org/files/ENCFF986PEP/@@download/ENCFF986PEP.bigWig released s3://encode-public/2017/10/09/f7cf28df-199f-4f7b-be31-75d729aec055/ENCFF986PEP.bigWig Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF430QLO bigWig bigWig signal of unique reads ce10 ENCSR799FDO Control ChIP-seq /worm-donors/ENCDO173ZSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF150GLW/ 9924687 Kevin White, UChicago f117cd1e981c715ec2d2765ba8ebfcd7 https://www.encodeproject.org/files/ENCFF430QLO/@@download/ENCFF430QLO.bigWig released s3://encode-public/2017/10/09/f4d77d0a-e091-44d4-915a-97a039c83196/ENCFF430QLO.bigWig Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF096KPC bigWig bigWig signal of unique reads ce11 ENCSR799FDO Control ChIP-seq /worm-donors/ENCDO173ZSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF919TMX/ 9922360 Kevin White, UChicago cd7de0ef030f60804b46991683fccf91 https://www.encodeproject.org/files/ENCFF096KPC/@@download/ENCFF096KPC.bigWig released s3://encode-public/2017/10/09/54e3d5d8-cbbe-48e5-89cf-61bda97b9ff7/ENCFF096KPC.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF558YQB bigWig bigWig read-depth normalized signal ce11 ENCSR799FDO Control ChIP-seq /worm-donors/ENCDO173ZSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF919TMX/ 9920818 Kevin White, UChicago 49e8d59ab4e4b1c7ac791878b5ba5093 https://www.encodeproject.org/files/ENCFF558YQB/@@download/ENCFF558YQB.bigWig released s3://encode-public/2017/10/09/3ea19561-f46d-4355-8f9b-1d94541880bd/ENCFF558YQB.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF086TSJ tagAlign tagAlign alignments hg19 ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF237VUT/, /files/ENCFF253VBF/, /files/ENCFF504XJQ/, /files/ENCFF938DKT/ 230130512 Anshul Kundaje, Stanford 284ba9134d716bb1de0e4f5e4cc7b473 https://www.encodeproject.org/files/ENCFF086TSJ/@@download/ENCFF086TSJ.tagAlign.gz archived s3://encode-public/2016/05/02/c882c426-15f5-489a-a5df-b447724eac5f/ENCFF086TSJ.tagAlign.gz Lab custom hg19 archived low read length ENCFF938DKT fastq fastq reads ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 476430893 Zhiping Weng, UMass 7da349f3ff9e7eee1103d619d19d2d71 SRA:SRR1067176 https://www.encodeproject.org/files/ENCFF938DKT/@@download/ENCFF938DKT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/398b9815-bd82-40d4-8d6f-8858edb0d42a/ENCFF938DKT.fastq.gz low read length ENCFF504XJQ fastq fastq reads ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 441060976 Zhiping Weng, UMass 6f1a38e4bb03153b9c93eae9edd5ba81 SRA:SRR1067227 https://www.encodeproject.org/files/ENCFF504XJQ/@@download/ENCFF504XJQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/074c9df7-2df4-4b19-8542-597be5ceb661/ENCFF504XJQ.fastq.gz low read length ENCFF237VUT fastq fastq reads ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 462207463 Zhiping Weng, UMass 24865bdb3c171707950100ca99be8f39 SRA:SRR1067329 https://www.encodeproject.org/files/ENCFF237VUT/@@download/ENCFF237VUT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/30cd585b-41d0-49f2-895e-bc5a247bc604/ENCFF237VUT.fastq.gz low read length ENCFF253VBF fastq fastq reads ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 467347754 Zhiping Weng, UMass e22d7983719826bed83464f1632d1980 SRA:SRR1067396 https://www.encodeproject.org/files/ENCFF253VBF/@@download/ENCFF253VBF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/ba191db8-0fde-4770-97fe-06b899e048b4/ENCFF253VBF.fastq.gz low read length ENCFF032LZB bam bam alignments GRCh38 ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF504XJQ/, /files/ENCFF938DKT/, /files/ENCFF253VBF/, /files/ENCFF237VUT/, /files/ENCFF110MCL/ 1642117208 ENCODE Processing Pipeline 90bd5c536dabe4e9c0b940d9436f0f20 https://www.encodeproject.org/files/ENCFF032LZB/@@download/ENCFF032LZB.bam released s3://encode-public/2020/10/09/a5ea5f6f-b04b-495c-abf1-a4197ffa0355/ENCFF032LZB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF678RKZ bam bam unfiltered alignments hg19 ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF504XJQ/, /files/ENCFF938DKT/, /files/ENCFF237VUT/, /files/ENCFF253VBF/ 2126909101 ENCODE Processing Pipeline 3ca291c284dc078735cd035d15f32a3a https://www.encodeproject.org/files/ENCFF678RKZ/@@download/ENCFF678RKZ.bam released s3://encode-public/2016/12/19/f227c191-fe6c-424f-a660-a7cc1da54494/ENCFF678RKZ.bam ENCODE3 hg19 archived low read length ENCFF155ZQO bam bam unfiltered alignments GRCh38 ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF643CGH/, /files/ENCFF504XJQ/, /files/ENCFF938DKT/, /files/ENCFF237VUT/, /files/ENCFF253VBF/ 2139340809 ENCODE Processing Pipeline 70f249aa9d473356b26c7247a2eb7655 https://www.encodeproject.org/files/ENCFF155ZQO/@@download/ENCFF155ZQO.bam released s3://encode-public/2016/12/19/2c834d3b-da6c-4fe5-b079-0c5a49fe553f/ENCFF155ZQO.bam ENCODE3 GRCh38 archived low read length ENCFF611EVF bam bam alignments hg19 ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF504XJQ/, /files/ENCFF938DKT/, /files/ENCFF237VUT/, /files/ENCFF253VBF/ 1523320568 ENCODE Processing Pipeline f9460ef28d9f4eab135eecd83f28f8d5 https://www.encodeproject.org/files/ENCFF611EVF/@@download/ENCFF611EVF.bam released s3://encode-public/2016/12/19/1ab7331a-c322-4104-82e9-fa35441237b7/ENCFF611EVF.bam ENCODE3 hg19 archived low read length ENCFF256TIW bam bam alignments GRCh38 ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF643CGH/, /files/ENCFF504XJQ/, /files/ENCFF938DKT/, /files/ENCFF237VUT/, /files/ENCFF253VBF/ 1523016937 ENCODE Processing Pipeline e4e3710980c9bfd376268bfea0764aed https://www.encodeproject.org/files/ENCFF256TIW/@@download/ENCFF256TIW.bam released s3://encode-public/2016/12/19/75d8e696-8161-447e-bd7e-bb32cb8fadc6/ENCFF256TIW.bam ENCODE3 GRCh38 archived low read length ENCFF381AYM bam bam unfiltered alignments GRCh38 ENCSR895CJW Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF504XJQ/, /files/ENCFF938DKT/, /files/ENCFF253VBF/, /files/ENCFF237VUT/, /files/ENCFF110MCL/ 2079891451 ENCODE Processing Pipeline b6aad02fdd454aae4f0c2af74163deb5 https://www.encodeproject.org/files/ENCFF381AYM/@@download/ENCFF381AYM.bam released s3://encode-public/2020/10/09/85b4dadc-a608-464e-a23b-f370dfee18c4/ENCFF381AYM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF481WVN tagAlign tagAlign alignments hg19 ENCSR556OGN Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF119CRN/, /files/ENCFF423HBH/ 115566007 Anshul Kundaje, Stanford 8e11bd8f5fc28d68700027e77fc9e854 https://www.encodeproject.org/files/ENCFF481WVN/@@download/ENCFF481WVN.tagAlign.gz archived s3://encode-public/2016/05/02/450c8b6c-0611-4007-8d73-5806d2f0190e/ENCFF481WVN.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF625OGC bam bam redacted unfiltered alignments GRCh38 ENCSR556OGN Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF119CRN/, /files/ENCFF643CGH/, /files/ENCFF423HBH/ 336572372 ENCODE Processing Pipeline 719f7a18baa0925e30bfc692e74ed29e https://www.encodeproject.org/files/ENCFF625OGC/@@download/ENCFF625OGC.bam released s3://encode-public/2018/01/29/762fa4e1-2435-43ea-b71d-a527249b4c53/ENCFF625OGC.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF933NGS bam bam redacted unfiltered alignments hg19 ENCSR556OGN Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF119CRN/, /files/ENCFF807MUK/, /files/ENCFF423HBH/ 333291345 ENCODE Processing Pipeline 2ebcb6c8407dde42ae08d73f1ec1a21c https://www.encodeproject.org/files/ENCFF933NGS/@@download/ENCFF933NGS.bam released s3://encode-public/2018/01/29/5b7095b0-de0a-404f-91ac-5148394e42f9/ENCFF933NGS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF619GFY bam bam redacted alignments hg19 ENCSR556OGN Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF119CRN/, /files/ENCFF807MUK/, /files/ENCFF423HBH/ 236274587 ENCODE Processing Pipeline b0a364c4aca7dc72878d8c788145c82a https://www.encodeproject.org/files/ENCFF619GFY/@@download/ENCFF619GFY.bam released s3://encode-public/2018/01/29/583e0acf-571f-474a-830b-774ff4f5b2b9/ENCFF619GFY.bam ENCODE3 hg19 archived low read depth, low read length ENCFF050EJF bam bam redacted alignments GRCh38 ENCSR556OGN Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF119CRN/, /files/ENCFF643CGH/, /files/ENCFF423HBH/ 236248371 ENCODE Processing Pipeline 3d76d57f0a89a9f9edd404f7a76f58e2 https://www.encodeproject.org/files/ENCFF050EJF/@@download/ENCFF050EJF.bam released s3://encode-public/2018/01/29/b422efbd-931e-4511-ac60-0b5052c23966/ENCFF050EJF.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF515SRL bam bam redacted alignments GRCh38 ENCSR556OGN Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF119CRN/, /files/ENCFF110MCL/, /files/ENCFF423HBH/ 718018792 ENCODE Processing Pipeline fa526b70fc4879290f8c6a973fae9eb6 https://www.encodeproject.org/files/ENCFF515SRL/@@download/ENCFF515SRL.bam released s3://encode-public/2021/01/27/e4ff641b-b953-43ba-8e0d-ccef4102c87e/ENCFF515SRL.bam ENCODE4 v1.7.0 GRCh38 released low read depth, low read length ENCFF369KVG bam bam alignments ce10 ENCSR246FAX Control ChIP-seq /worm-donors/ENCDO462XER/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191448/'], '@type': ['Target', 'Item'], 'name': 'sdz-38-celegans', 'label': 'sdz-38', '@id': '/targets/sdz-38-celegans/', 'title': 'sdz-38 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1bab6dce-437d-4cf7-938e-c7783cb9d2d7', 'status': 'released'} ce11 II 9964292 10003531 DNA 2016-07-06 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF222PBN/ 266130011 Kevin White, UChicago e884fa79f745a45a915b15d14b81275a https://www.encodeproject.org/files/ENCFF369KVG/@@download/ENCFF369KVG.bam released s3://encode-public/2015/08/19/853ea4a2-9b5a-4128-b5bf-516260702e3c/ENCFF369KVG.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF021CZP bigWig bigWig read-depth normalized signal ce10 ENCSR246FAX Control ChIP-seq /worm-donors/ENCDO462XER/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191448/'], '@type': ['Target', 'Item'], 'name': 'sdz-38-celegans', 'label': 'sdz-38', '@id': '/targets/sdz-38-celegans/', 'title': 'sdz-38 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1bab6dce-437d-4cf7-938e-c7783cb9d2d7', 'status': 'released'} ce11 II 9964292 10003531 DNA 2016-07-06 modERN sonication (generic microtip) 1 1_1 /files/ENCFF369KVG/ 9978330 Kevin White, UChicago 0c6fb7d97c1cb2fa18b294bf7405d98f https://www.encodeproject.org/files/ENCFF021CZP/@@download/ENCFF021CZP.bigWig released s3://encode-public/2015/10/02/354fdaad-041e-4760-8ffa-2b39a79c7345/ENCFF021CZP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF563FVR bigWig bigWig signal of unique reads ce10 ENCSR246FAX Control ChIP-seq /worm-donors/ENCDO462XER/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191448/'], '@type': ['Target', 'Item'], 'name': 'sdz-38-celegans', 'label': 'sdz-38', '@id': '/targets/sdz-38-celegans/', 'title': 'sdz-38 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1bab6dce-437d-4cf7-938e-c7783cb9d2d7', 'status': 'released'} ce11 II 9964292 10003531 DNA 2016-07-06 modERN sonication (generic microtip) 1 1_1 /files/ENCFF369KVG/ 9966390 Kevin White, UChicago 13e2f6be7fcc7fc5cb6b9fb9abf25af0 https://www.encodeproject.org/files/ENCFF563FVR/@@download/ENCFF563FVR.bigWig released s3://encode-public/2015/10/02/f1128077-3b7a-4918-9f3f-fa010150d2da/ENCFF563FVR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF222PBN fastq fastq reads ENCSR246FAX Control ChIP-seq /worm-donors/ENCDO462XER/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191448/'], '@type': ['Target', 'Item'], 'name': 'sdz-38-celegans', 'label': 'sdz-38', '@id': '/targets/sdz-38-celegans/', 'title': 'sdz-38 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1bab6dce-437d-4cf7-938e-c7783cb9d2d7', 'status': 'released'} ce11 II 9964292 10003531 DNA 2016-07-06 modERN sonication (generic microtip) 1 1_1 50 single-ended 222147364 Kevin White, UChicago f4faf0f2b5331104e630f92ea02896af https://www.encodeproject.org/files/ENCFF222PBN/@@download/ENCFF222PBN.fastq.gz Illumina HiSeq 2500 /files/ENCFF395SPX/ released s3://encode-public/2015/08/24/e38ec72f-8a45-441d-a3b5-3a37fd756a4e/ENCFF222PBN.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF151VIC bigWig bigWig signal of unique reads ce11 ENCSR246FAX Control ChIP-seq /worm-donors/ENCDO462XER/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191448/'], '@type': ['Target', 'Item'], 'name': 'sdz-38-celegans', 'label': 'sdz-38', '@id': '/targets/sdz-38-celegans/', 'title': 'sdz-38 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1bab6dce-437d-4cf7-938e-c7783cb9d2d7', 'status': 'released'} ce11 II 9964292 10003531 DNA 2016-07-06 modERN sonication (generic microtip) 1 1_1 /files/ENCFF863UYW/ 9955024 Kevin White, UChicago ef3d9ff9c4cbd2c4de48b3c5b2c83555 https://www.encodeproject.org/files/ENCFF151VIC/@@download/ENCFF151VIC.bigWig released s3://encode-public/2016/02/03/c3d69114-07cd-4b7d-88d5-7541e56b8d38/ENCFF151VIC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF527NLY bigWig bigWig read-depth normalized signal ce11 ENCSR246FAX Control ChIP-seq /worm-donors/ENCDO462XER/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191448/'], '@type': ['Target', 'Item'], 'name': 'sdz-38-celegans', 'label': 'sdz-38', '@id': '/targets/sdz-38-celegans/', 'title': 'sdz-38 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1bab6dce-437d-4cf7-938e-c7783cb9d2d7', 'status': 'released'} ce11 II 9964292 10003531 DNA 2016-07-06 modERN sonication (generic microtip) 1 1_1 /files/ENCFF863UYW/ 9969508 Kevin White, UChicago 1ecfbdffd70206d51f018b88973d4dae https://www.encodeproject.org/files/ENCFF527NLY/@@download/ENCFF527NLY.bigWig released s3://encode-public/2016/02/03/0418e99a-99bf-465c-966a-dde456cc0a0f/ENCFF527NLY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF863UYW bam bam alignments ce11 ENCSR246FAX Control ChIP-seq /worm-donors/ENCDO462XER/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191448/'], '@type': ['Target', 'Item'], 'name': 'sdz-38-celegans', 'label': 'sdz-38', '@id': '/targets/sdz-38-celegans/', 'title': 'sdz-38 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1bab6dce-437d-4cf7-938e-c7783cb9d2d7', 'status': 'released'} ce11 II 9964292 10003531 DNA 2016-07-06 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF222PBN/ 266405487 Kevin White, UChicago ba25e20f06a2c9abfdaa728d01b569ae https://www.encodeproject.org/files/ENCFF863UYW/@@download/ENCFF863UYW.bam released s3://encode-public/2016/01/19/be69828b-d811-4444-b9d3-524421725bbc/ENCFF863UYW.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF746VWD fastq fastq reads ENCSR975BES Control ChIP-seq /worm-donors/ENCDO274TWI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181466/'], '@type': ['Target', 'Item'], 'name': 'fkh-4-celegans', 'label': 'fkh-4', '@id': '/targets/fkh-4-celegans/', 'title': 'fkh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b63844d0-1339-45dc-9608-511ef1d4412a', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 227778253 Kevin White, UChicago f788aa4a733112a8193e630282336dcc https://www.encodeproject.org/files/ENCFF746VWD/@@download/ENCFF746VWD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/5f2040d0-935b-4b9f-8c07-fc6fa0f571f2/ENCFF746VWD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF114VFV bam bam alignments ce10 ENCSR975BES Control ChIP-seq /worm-donors/ENCDO274TWI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181466/'], '@type': ['Target', 'Item'], 'name': 'fkh-4-celegans', 'label': 'fkh-4', '@id': '/targets/fkh-4-celegans/', 'title': 'fkh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b63844d0-1339-45dc-9608-511ef1d4412a', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF746VWD/ 264747037 Kevin White, UChicago d983d2e5b3d59b8e34d71ee79a1f4489 https://www.encodeproject.org/files/ENCFF114VFV/@@download/ENCFF114VFV.bam released s3://encode-public/2015/08/19/107157bc-622d-4971-8917-b4a0166d7085/ENCFF114VFV.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF821AUE bigWig bigWig signal of unique reads ce10 ENCSR975BES Control ChIP-seq /worm-donors/ENCDO274TWI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181466/'], '@type': ['Target', 'Item'], 'name': 'fkh-4-celegans', 'label': 'fkh-4', '@id': '/targets/fkh-4-celegans/', 'title': 'fkh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b63844d0-1339-45dc-9608-511ef1d4412a', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF114VFV/ 9970310 Kevin White, UChicago 20dd30553c97a57867188c80c0d2f9b7 https://www.encodeproject.org/files/ENCFF821AUE/@@download/ENCFF821AUE.bigWig released s3://encode-public/2015/10/02/8359f503-2c85-4e8a-a195-ed85c3715cca/ENCFF821AUE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF754LGJ bigWig bigWig read-depth normalized signal ce10 ENCSR975BES Control ChIP-seq /worm-donors/ENCDO274TWI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181466/'], '@type': ['Target', 'Item'], 'name': 'fkh-4-celegans', 'label': 'fkh-4', '@id': '/targets/fkh-4-celegans/', 'title': 'fkh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b63844d0-1339-45dc-9608-511ef1d4412a', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF114VFV/ 9969235 Kevin White, UChicago 71c329dfee017e0df21be6dc4fad357e https://www.encodeproject.org/files/ENCFF754LGJ/@@download/ENCFF754LGJ.bigWig released s3://encode-public/2015/10/02/789a29b3-5225-470d-b1c0-3ad519fe33ff/ENCFF754LGJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF959BSD bam bam alignments ce11 ENCSR975BES Control ChIP-seq /worm-donors/ENCDO274TWI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181466/'], '@type': ['Target', 'Item'], 'name': 'fkh-4-celegans', 'label': 'fkh-4', '@id': '/targets/fkh-4-celegans/', 'title': 'fkh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b63844d0-1339-45dc-9608-511ef1d4412a', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF746VWD/ 265006092 Kevin White, UChicago 27455bddd78889fc48308b7f23467033 https://www.encodeproject.org/files/ENCFF959BSD/@@download/ENCFF959BSD.bam released s3://encode-public/2016/01/16/9dfca491-69c9-4fc9-a6b0-3438e0e4918f/ENCFF959BSD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF260SMT bigWig bigWig signal of unique reads ce11 ENCSR975BES Control ChIP-seq /worm-donors/ENCDO274TWI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181466/'], '@type': ['Target', 'Item'], 'name': 'fkh-4-celegans', 'label': 'fkh-4', '@id': '/targets/fkh-4-celegans/', 'title': 'fkh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b63844d0-1339-45dc-9608-511ef1d4412a', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF959BSD/ 9967960 Kevin White, UChicago 0526bb19dc8139d401016264e49e1453 https://www.encodeproject.org/files/ENCFF260SMT/@@download/ENCFF260SMT.bigWig released s3://encode-public/2016/02/03/c304b785-9f4c-474e-ba7c-dfcb4ac22582/ENCFF260SMT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF703FAN bigWig bigWig read-depth normalized signal ce11 ENCSR975BES Control ChIP-seq /worm-donors/ENCDO274TWI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 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DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF511FII/ 257264671 Anshul Kundaje, Stanford c5e53ce56b28ed9d39385d470e546a49 https://www.encodeproject.org/files/ENCFF629GDD/@@download/ENCFF629GDD.tagAlign.gz archived s3://encode-public/2016/05/02/20b9967c-8bbf-445b-a1f3-7cfc6c735925/ENCFF629GDD.tagAlign.gz Lab custom hg19 archived low read length ENCFF511FII fastq fastq reads ENCSR293XMP Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1952632577 Zhiping Weng, UMass 06e6f464cd9e14703fd23a3ea4dae58a SRA:SRR1067110 https://www.encodeproject.org/files/ENCFF511FII/@@download/ENCFF511FII.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/4b488851-353c-43b1-a34b-5f9b0489b2b9/ENCFF511FII.fastq.gz low read length ENCFF641VZH bam bam alignments GRCh38 ENCSR293XMP Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF511FII/ 1784037139 ENCODE Processing Pipeline 6f823483eeed03a5124797f0b7b62a84 https://www.encodeproject.org/files/ENCFF641VZH/@@download/ENCFF641VZH.bam released s3://encode-public/2020/10/08/165d8a6b-ee6e-4aa3-9b0e-5973722c771d/ENCFF641VZH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF473BSM bam bam unfiltered alignments hg19 ENCSR293XMP Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF511FII/, /files/ENCFF807MUK/ 2248149178 ENCODE Processing Pipeline bfce3d40c169e41be63493e361b89dad https://www.encodeproject.org/files/ENCFF473BSM/@@download/ENCFF473BSM.bam released s3://encode-public/2016/12/19/4e9023f8-eca1-4131-bc34-9cf330c42ac4/ENCFF473BSM.bam ENCODE3 hg19 archived low read length ENCFF296QGR bam bam unfiltered alignments GRCh38 ENCSR293XMP Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF511FII/, /files/ENCFF643CGH/ 2261365464 ENCODE Processing Pipeline 54281d61b5602a1c52d9f7da21489dbe https://www.encodeproject.org/files/ENCFF296QGR/@@download/ENCFF296QGR.bam released s3://encode-public/2016/12/19/60bd8638-0151-4bc9-9091-d7e8c2af9c15/ENCFF296QGR.bam ENCODE3 GRCh38 archived low read length ENCFF272ARG bam bam alignments hg19 ENCSR293XMP Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF511FII/, /files/ENCFF807MUK/ 1656708357 ENCODE Processing Pipeline 175151a6a74e1dc90a3208185cb9f986 https://www.encodeproject.org/files/ENCFF272ARG/@@download/ENCFF272ARG.bam released s3://encode-public/2016/12/19/851660c0-b856-4e5a-9d9b-9435ad0e326a/ENCFF272ARG.bam ENCODE3 hg19 archived low read length ENCFF755OJB bam bam alignments GRCh38 ENCSR293XMP Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF511FII/, /files/ENCFF643CGH/ 1656153330 ENCODE Processing Pipeline 5bfaf48829463e9499c93490ae60152f https://www.encodeproject.org/files/ENCFF755OJB/@@download/ENCFF755OJB.bam released s3://encode-public/2016/12/19/2ca57e61-91f2-417b-b48c-bb218ab3b1e0/ENCFF755OJB.bam ENCODE3 GRCh38 archived low read length ENCFF656JKK bam bam unfiltered alignments GRCh38 ENCSR293XMP Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF511FII/ 2206613072 ENCODE Processing Pipeline bf841c82fb10ffd1801b3431b3f14e57 https://www.encodeproject.org/files/ENCFF656JKK/@@download/ENCFF656JKK.bam released s3://encode-public/2020/10/08/143b8a67-14c0-46d3-bcb6-30843eb6f63a/ENCFF656JKK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000BQJ bam bam alignments hg19 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 442630974 Bradley Bernstein, Broad 32f19c2cd5bf7648484d09a218eafc9f https://www.encodeproject.org/files/ENCFF000BQJ/@@download/ENCFF000BQJ.bam archived s3://encode-public/2010/11/16/c0130f3c-f6bc-4836-8958-2a421351a256/ENCFF000BQJ.bam Lab custom hg19 archived low read depth, low read length ENCFF000BQK bam bam alignments hg19 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_4 36 604602364 Bradley Bernstein, Broad ea135c3a1ec8c1e568e76202bf41dfb0 https://www.encodeproject.org/files/ENCFF000BQK/@@download/ENCFF000BQK.bam archived s3://encode-public/2010/11/16/cf136060-413d-4a43-aaf2-0dc612a4e847/ENCFF000BQK.bam Lab custom hg19 archived low read depth, low read length ENCFF000BQM bam bam alignments hg19 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_5 36 184710775 Bradley Bernstein, Broad 0f25a46e74dea0065de85a33f81e6f8a https://www.encodeproject.org/files/ENCFF000BQM/@@download/ENCFF000BQM.bam archived s3://encode-public/2010/11/16/b9fc9455-5467-41f9-add8-0943ee365d2a/ENCFF000BQM.bam Lab custom hg19 archived low read depth, low read length ENCFF000BQP bigWig bigWig signal hg19 ENCSR000ALG Control ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 457022218 Bradley Bernstein, Broad 74e42f9df42aeab133ec0deea48b1a85 https://www.encodeproject.org/files/ENCFF000BQP/@@download/ENCFF000BQP.bigWig archived s3://encode-public/2010/11/16/b17e78cb-6bfe-4758-bc00-7937fe7973c2/ENCFF000BQP.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000BQS fastq fastq reads ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_5 36 single-ended 446361863 Bradley Bernstein, Broad 63cd26eb084f4d35e82c3c7e828a0208 SRA:SRR5331324 https://www.encodeproject.org/files/ENCFF000BQS/@@download/ENCFF000BQS.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/48457663-10e6-43e8-8b72-46fa7b57980e/ENCFF000BQS.fastq.gz low read depth, low read length ENCFF000BQV fastq fastq reads ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 655353272 Bradley Bernstein, Broad 29f5c9e4c1257f12f8082c2c99730770 SRA:SRR5331325 https://www.encodeproject.org/files/ENCFF000BQV/@@download/ENCFF000BQV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/2061880b-5557-4275-bd5e-3eaae76cb6c1/ENCFF000BQV.fastq.gz low read depth, low read length ENCFF000BQW fastq fastq reads ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_4 36 single-ended 693081564 Bradley Bernstein, Broad a8a616eb7047cca4acbb139f0f174c7c SRA:SRR5331326 https://www.encodeproject.org/files/ENCFF000BQW/@@download/ENCFF000BQW.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2010/11/16/62dc002e-f9d2-454b-8265-c6ec82636279/ENCFF000BQW.fastq.gz low read depth, low read length ENCFF780ZFP bam bam alignments GRCh38 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQS/, /files/ENCFF643CGH/, /files/ENCFF000BQV/, /files/ENCFF000BQW/ 712895034 ENCODE Processing Pipeline 14bf322096fae09b238a78d8de9fb506 https://www.encodeproject.org/files/ENCFF780ZFP/@@download/ENCFF780ZFP.bam released s3://encode-public/2016/07/13/806e8d6b-25ea-49d1-b266-a9fc4778334d/ENCFF780ZFP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF261CBZ bam bam unfiltered alignments GRCh38 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQS/, /files/ENCFF643CGH/, /files/ENCFF000BQV/, /files/ENCFF000BQW/ 2218754322 ENCODE Processing Pipeline 47415128691ccb964eab68acb5298d66 https://www.encodeproject.org/files/ENCFF261CBZ/@@download/ENCFF261CBZ.bam released s3://encode-public/2016/07/13/1771441c-a2b0-46b0-ab0b-10ca8ba8620e/ENCFF261CBZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF771PFZ bam bam unfiltered alignments hg19 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQS/, /files/ENCFF807MUK/, /files/ENCFF000BQV/, /files/ENCFF000BQW/ 2211485519 ENCODE Processing Pipeline ae139e5b5a8f65ecc855edd06b347614 https://www.encodeproject.org/files/ENCFF771PFZ/@@download/ENCFF771PFZ.bam released s3://encode-public/2016/11/15/c0a4b2f9-2b72-4ea2-bfa1-24a345970ee3/ENCFF771PFZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF039WIG bam bam alignments hg19 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQS/, /files/ENCFF807MUK/, /files/ENCFF000BQV/, /files/ENCFF000BQW/ 712984478 ENCODE Processing Pipeline 578a04df2a5bef4a499e77044c71557b https://www.encodeproject.org/files/ENCFF039WIG/@@download/ENCFF039WIG.bam released s3://encode-public/2016/11/15/b5c5f83b-7601-4a21-b896-a2b52bd682d2/ENCFF039WIG.bam ENCODE3 hg19 archived low read depth, low read length ENCFF636OYP tagAlign tagAlign alignments hg19 ENCSR000ALG Control ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 146889012 Anshul Kundaje, Stanford ce70ad1ae91346c3b838f570492f282f https://www.encodeproject.org/files/ENCFF636OYP/@@download/ENCFF636OYP.tagAlign.gz archived s3://encode-public/2016/07/19/4ad09dc1-a7a3-4ff9-a6a1-2b2e0caf8e75/ENCFF636OYP.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF496RFB fastq fastq reads ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 single-ended 598073823 Bradley Bernstein, Broad 529c94bb06cafaede5ff524db29b2709 https://www.encodeproject.org/files/ENCFF496RFB/@@download/ENCFF496RFB.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/24/da801a92-c1fd-4cb8-bf1d-3fb3e4078662/ENCFF496RFB.fastq.gz low read depth, low read length ENCFF907AUP fastq fastq reads ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 single-ended 636439284 Bradley Bernstein, Broad fd576c91e330155476736aac15d02180 https://www.encodeproject.org/files/ENCFF907AUP/@@download/ENCFF907AUP.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/24/38b7c3e5-de68-4924-9c6d-2a831f05d7c6/ENCFF907AUP.fastq.gz low read depth, low read length ENCFF072ZTA bam bam unfiltered alignments GRCh38 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQS/, /files/ENCFF643CGH/, /files/ENCFF000BQV/, /files/ENCFF000BQW/ 2218754357 ENCODE Processing Pipeline 147043fa6e94bdacefb753744ca63349 https://www.encodeproject.org/files/ENCFF072ZTA/@@download/ENCFF072ZTA.bam released s3://encode-public/2020/02/12/31d07875-0420-4ed8-8bb5-904849cb6fcf/ENCFF072ZTA.bam low read depth, low read length ENCFF766UDQ bam bam alignments GRCh38 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQS/, /files/ENCFF643CGH/, /files/ENCFF000BQV/, /files/ENCFF000BQW/ 712895067 ENCODE Processing Pipeline 2a81cbea49fe1c0b988e299d82d85fa7 https://www.encodeproject.org/files/ENCFF766UDQ/@@download/ENCFF766UDQ.bam released s3://encode-public/2020/02/12/f10d273d-c684-4b0c-84a9-ef0caad4369a/ENCFF766UDQ.bam low read depth, low read length ENCFF624GFA bam bam unfiltered alignments GRCh38 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQV/, /files/ENCFF000BQW/, /files/ENCFF000BQS/, /files/ENCFF110MCL/ 2201608858 ENCODE Processing Pipeline 9071b0040ba8ed2ced913ed3af522fb0 https://www.encodeproject.org/files/ENCFF624GFA/@@download/ENCFF624GFA.bam released s3://encode-public/2020/09/03/1a3c24d6-018b-41dc-823e-53619bd3ab6c/ENCFF624GFA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF152MBM bam bam alignments GRCh38 ENCSR000ALG Control ChIP-seq /human-donors/ENCDO551FXN/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2, 1_4, 1_5 36 /files/ENCFF000BQV/, /files/ENCFF000BQW/, /files/ENCFF000BQS/, /files/ENCFF110MCL/ 830178861 ENCODE Processing Pipeline a1f8c2c5b0481f3e8ad1b672319d2e68 https://www.encodeproject.org/files/ENCFF152MBM/@@download/ENCFF152MBM.bam released s3://encode-public/2020/09/03/35ae2591-0fb8-4a4c-9770-538c657f80e0/ENCFF152MBM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF095RQD fastq fastq reads ENCSR080OFD Control ChIP-seq /fly-donors/ENCDO406BKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31572/'], '@type': ['Target', 'Item'], 'name': 'CG12219-dmelanogaster', 'label': 'CG12219', '@id': '/targets/CG12219-dmelanogaster/', 'title': 'CG12219 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'dbf9a03e-f584-4d26-afdb-28e420d3b7d9', 'status': 'released'} dm3 X 6182112 6204593 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 799342381 Kevin White, UChicago 3bf31f819831a2763f1ffd004f799fd0 https://www.encodeproject.org/files/ENCFF095RQD/@@download/ENCFF095RQD.fastq.gz Illumina HiSeq 4000 /files/ENCFF675UAE/ released s3://encode-public/2018/02/01/58d6fdc3-5351-4a8e-8f50-0f89e0d560db/ENCFF095RQD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF550TKE bam bam alignments dm6 ENCSR080OFD Control ChIP-seq /fly-donors/ENCDO406BKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31572/'], '@type': ['Target', 'Item'], 'name': 'CG12219-dmelanogaster', 'label': 'CG12219', '@id': '/targets/CG12219-dmelanogaster/', 'title': 'CG12219 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'dbf9a03e-f584-4d26-afdb-28e420d3b7d9', 'status': 'released'} dm3 X 6182112 6204593 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF095RQD/, /files/ENCFF479RCH/ 1048755003 Kevin White, UChicago 6c2e9ddb9d5b85921977ac3c87ce7826 https://www.encodeproject.org/files/ENCFF550TKE/@@download/ENCFF550TKE.bam released s3://encode-public/2018/02/02/5c3c1f99-e3cc-4f63-a75b-250ca450f122/ENCFF550TKE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002WVK bigWig bigWig signal of unique reads dm6 ENCSR080OFD Control ChIP-seq /fly-donors/ENCDO406BKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31572/'], '@type': ['Target', 'Item'], 'name': 'CG12219-dmelanogaster', 'label': 'CG12219', '@id': '/targets/CG12219-dmelanogaster/', 'title': 'CG12219 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'dbf9a03e-f584-4d26-afdb-28e420d3b7d9', 'status': 'released'} dm3 X 6182112 6204593 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF550TKE/ 17567849 Kevin White, UChicago aebd326e8ae9f9ae75038e82fa59dc55 https://www.encodeproject.org/files/ENCFF002WVK/@@download/ENCFF002WVK.bigWig released s3://encode-public/2018/02/02/437e40f4-a3ed-4f0c-bedb-3e8207b8ef6f/ENCFF002WVK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF655FAI bigWig bigWig read-depth normalized signal dm6 ENCSR080OFD Control ChIP-seq /fly-donors/ENCDO406BKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31572/'], '@type': ['Target', 'Item'], 'name': 'CG12219-dmelanogaster', 'label': 'CG12219', '@id': '/targets/CG12219-dmelanogaster/', 'title': 'CG12219 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'dbf9a03e-f584-4d26-afdb-28e420d3b7d9', 'status': 'released'} dm3 X 6182112 6204593 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF550TKE/ 17584324 Kevin White, UChicago 51bab1813cdcb69a432074039421be5c https://www.encodeproject.org/files/ENCFF655FAI/@@download/ENCFF655FAI.bigWig released s3://encode-public/2018/02/02/7290e5cd-0a2d-449c-93c4-feab2c1c3a74/ENCFF655FAI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF392YNA bam bam unfiltered alignments GRCh38 ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF886TBQ/, /files/ENCFF237MJB/, /files/ENCFF200EQN/, /files/ENCFF770AVI/, /files/ENCFF212KZA/, /files/ENCFF004XGN/, /files/ENCFF110MCL/, /files/ENCFF222BGC/, /files/ENCFF541UOQ/ 6011961397 ENCODE Processing Pipeline 00ceee6348599459dc08b0986cc1783e https://www.encodeproject.org/files/ENCFF392YNA/@@download/ENCFF392YNA.bam released s3://encode-public/2020/09/20/c4d2bf61-eb4c-415b-bf6a-6ae79802ca81/ENCFF392YNA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF004XGN fastq fastq reads ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 308815537 Bradley Bernstein, Broad 622a2f7cd698a53853034b41f9a43977 SRA:SRR10837535 https://www.encodeproject.org/files/ENCFF004XGN/@@download/ENCFF004XGN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/16404de7-0517-4e5b-8150-05079b64e051/ENCFF004XGN.fastq.gz ENCFF886TBQ fastq fastq reads ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 305413613 Bradley Bernstein, Broad b2e14c3bc9a072ae49818eef276240e2 SRA:SRR10837536 https://www.encodeproject.org/files/ENCFF886TBQ/@@download/ENCFF886TBQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/04aa3b62-fc69-4b77-bbe1-7a44c7d4979d/ENCFF886TBQ.fastq.gz ENCFF222BGC fastq fastq reads ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 1185557785 Bradley Bernstein, 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/files/ENCFF886TBQ/, /files/ENCFF004XGN/, /files/ENCFF541UOQ/, /files/ENCFF770AVI/, /files/ENCFF212KZA/ 6006816193 ENCODE Processing Pipeline 85b39b44678f236e024e04deea98bee7 https://www.encodeproject.org/files/ENCFF979BDP/@@download/ENCFF979BDP.bam released s3://encode-public/2019/02/08/b36d9205-b26f-42e9-85cd-c45b37a24a15/ENCFF979BDP.bam ENCODE3 GRCh38 archived ENCFF162MZV bam bam unfiltered alignments hg19 ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF200EQN/, /files/ENCFF222BGC/, /files/ENCFF237MJB/, /files/ENCFF807MUK/, /files/ENCFF886TBQ/, /files/ENCFF004XGN/, /files/ENCFF541UOQ/, /files/ENCFF770AVI/, /files/ENCFF212KZA/ 5990722286 ENCODE Processing Pipeline 5735b055b537d9e35dec30084ab96f25 https://www.encodeproject.org/files/ENCFF162MZV/@@download/ENCFF162MZV.bam released s3://encode-public/2019/02/08/0b15ffbe-14bd-453f-a29f-e9c5cb53e44a/ENCFF162MZV.bam ENCODE3 hg19 archived ENCFF538CEM bam bam alignments GRCh38 ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF200EQN/, /files/ENCFF643CGH/, /files/ENCFF222BGC/, /files/ENCFF237MJB/, /files/ENCFF886TBQ/, /files/ENCFF004XGN/, /files/ENCFF541UOQ/, /files/ENCFF770AVI/, /files/ENCFF212KZA/ 4946831543 ENCODE Processing Pipeline 6b8f4ee9a19d60c65680190f612459b5 https://www.encodeproject.org/files/ENCFF538CEM/@@download/ENCFF538CEM.bam released s3://encode-public/2019/02/08/2938b96c-9b99-49d3-80f9-c1bf43ace5f2/ENCFF538CEM.bam ENCODE3 GRCh38 archived ENCFF851RAB bam bam alignments hg19 ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF200EQN/, /files/ENCFF222BGC/, /files/ENCFF237MJB/, /files/ENCFF807MUK/, /files/ENCFF886TBQ/, /files/ENCFF004XGN/, /files/ENCFF541UOQ/, /files/ENCFF770AVI/, 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9e772744a928e7d445e6d785ba2dfa76 SRA:SRR10837540 https://www.encodeproject.org/files/ENCFF770AVI/@@download/ENCFF770AVI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/28c999ad-0ceb-4915-9a70-2db78411d433/ENCFF770AVI.fastq.gz ENCFF200EQN fastq fastq reads ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 1086239190 Bradley Bernstein, Broad 1959e368c95450b1878285cb079142ab SRA:SRR10837541 https://www.encodeproject.org/files/ENCFF200EQN/@@download/ENCFF200EQN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/ce893dab-6f92-4de8-a0c1-ea50948d2b5f/ENCFF200EQN.fastq.gz ENCFF237MJB fastq fastq reads ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 418404640 Bradley Bernstein, Broad 7bb395580feecda84754082c9981ab86 SRA:SRR10837542 https://www.encodeproject.org/files/ENCFF237MJB/@@download/ENCFF237MJB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/5eca12d5-e55e-4a5c-a845-5236e9bbb9d6/ENCFF237MJB.fastq.gz ENCFF637ERD bam bam alignments GRCh38 ENCSR152HLZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF886TBQ/, /files/ENCFF237MJB/, /files/ENCFF200EQN/, /files/ENCFF770AVI/, /files/ENCFF212KZA/, /files/ENCFF004XGN/, /files/ENCFF110MCL/, /files/ENCFF222BGC/, /files/ENCFF541UOQ/ 5010596687 ENCODE Processing Pipeline 0468a592b7b67740f9856948ca64f3e7 https://www.encodeproject.org/files/ENCFF637ERD/@@download/ENCFF637ERD.bam released s3://encode-public/2020/09/20/1168466a-137c-4e96-909e-6fd9d9fd2b8a/ENCFF637ERD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF301GII fastq fastq reads ENCSR943ZYI Control ChIP-seq /fly-donors/ENCDO340PLN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36986/'], '@type': ['Target', 'Item'], 'name': 'MESR4-dmelanogaster', 'label': 'MESR4', '@id': '/targets/MESR4-dmelanogaster/', 'title': 'MESR4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7584155a-34d0-45f1-b70f-c253aabe0f5b', 'status': 'released'} dm3 2R 13427124 13452481 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1478544691 Kevin White, UChicago 19dce5727014f44057ce77902cbf1029 https://www.encodeproject.org/files/ENCFF301GII/@@download/ENCFF301GII.fastq.gz Illumina HiSeq 4000 /files/ENCFF499QTJ/ released s3://encode-public/2018/02/01/6fea512a-ae50-40ed-8f47-ab8405661bac/ENCFF301GII.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF139QRS bam bam alignments dm6 ENCSR943ZYI Control ChIP-seq /fly-donors/ENCDO340PLN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36986/'], '@type': ['Target', 'Item'], 'name': 'MESR4-dmelanogaster', 'label': 'MESR4', '@id': '/targets/MESR4-dmelanogaster/', 'title': 'MESR4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7584155a-34d0-45f1-b70f-c253aabe0f5b', 'status': 'released'} dm3 2R 13427124 13452481 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF301GII/, /files/ENCFF479RCH/ 1971107918 Kevin White, UChicago 8fcc6d8bec97c53737e803c6fa82a6f8 https://www.encodeproject.org/files/ENCFF139QRS/@@download/ENCFF139QRS.bam released s3://encode-public/2018/02/02/a7db1ded-aadd-4945-9e49-5ccd9e9dbd75/ENCFF139QRS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF844YRG bigWig bigWig read-depth normalized signal dm6 ENCSR943ZYI Control ChIP-seq /fly-donors/ENCDO340PLN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36986/'], '@type': ['Target', 'Item'], 'name': 'MESR4-dmelanogaster', 'label': 'MESR4', '@id': '/targets/MESR4-dmelanogaster/', 'title': 'MESR4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7584155a-34d0-45f1-b70f-c253aabe0f5b', 'status': 'released'} dm3 2R 13427124 13452481 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF139QRS/ 17740845 Kevin White, UChicago 353fca45e4a6ed4255b7061a5e711d67 https://www.encodeproject.org/files/ENCFF844YRG/@@download/ENCFF844YRG.bigWig released s3://encode-public/2018/02/02/5b6e7715-96f5-4028-a99f-b1da4f5ac0e1/ENCFF844YRG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF164QDQ bigWig bigWig signal of unique reads dm6 ENCSR943ZYI Control ChIP-seq /fly-donors/ENCDO340PLN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36986/'], '@type': ['Target', 'Item'], 'name': 'MESR4-dmelanogaster', 'label': 'MESR4', '@id': '/targets/MESR4-dmelanogaster/', 'title': 'MESR4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7584155a-34d0-45f1-b70f-c253aabe0f5b', 'status': 'released'} dm3 2R 13427124 13452481 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF139QRS/ 17797641 Kevin White, UChicago f4f7ad0446a5e9b8d9c510b08867681e https://www.encodeproject.org/files/ENCFF164QDQ/@@download/ENCFF164QDQ.bigWig released s3://encode-public/2018/02/02/3fa085e0-1903-47b9-81ed-483eeb270051/ENCFF164QDQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000QTK bam bam alignments hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000QTV/ 1673890419 Richard Myers, HAIB 9c809aeec473e05e1e7bfee1aa85790c https://www.encodeproject.org/files/ENCFF000QTK/@@download/ENCFF000QTK.bam archived s3://encode-public/2012/01/23/6a63c6d8-088e-40b3-8638-6a5a249c7843/ENCFF000QTK.bam Lab custom hg19 archived low read length poor library complexity, severe bottlenecking ENCFF000QTL bigWig bigWig raw signal hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 73362696 Richard Myers, HAIB e82807cf0c06f250b0121140dcccdaed https://www.encodeproject.org/files/ENCFF000QTL/@@download/ENCFF000QTL.bigWig archived s3://encode-public/2012/01/23/fc12f4f9-3277-4075-a8e4-517242dcb06f/ENCFF000QTL.bigWig Lab custom hg19 archived low read length poor library complexity, severe bottlenecking ENCFF000QTM bam bam alignments hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QTR/ 2072092493 Richard Myers, HAIB a6ff2b752cdfcd2279b10b65b95e7c06 https://www.encodeproject.org/files/ENCFF000QTM/@@download/ENCFF000QTM.bam archived s3://encode-public/2012/01/23/fb33ea0c-8f83-49bb-9f48-80ad8e419c98/ENCFF000QTM.bam Lab custom hg19 archived low read length poor library complexity, severe bottlenecking ENCFF000QTN bigWig bigWig raw signal hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 14154460 Richard Myers, HAIB fde98c094553429288ebb2b9743e0666 https://www.encodeproject.org/files/ENCFF000QTN/@@download/ENCFF000QTN.bigWig archived s3://encode-public/2012/01/23/30a1191e-23bb-482b-bfe2-859be09d75d2/ENCFF000QTN.bigWig Lab custom hg19 archived low read length poor library complexity, severe bottlenecking ENCFF000QTR fastq fastq reads ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 single-ended 1638719187 Richard Myers, HAIB 2688674bdee90f6f6e43f6d994a4edc7 https://www.encodeproject.org/files/ENCFF000QTR/@@download/ENCFF000QTR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/d1a309d7-fe97-42f1-bd57-2a4162c53325/ENCFF000QTR.fastq.gz low read length poor library complexity, severe bottlenecking ENCFF000QTV fastq fastq reads ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 1946682826 Richard Myers, HAIB 5c548ac03d3b70bd9d3412a6df42274f https://www.encodeproject.org/files/ENCFF000QTV/@@download/ENCFF000QTV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/632f8976-33f7-4494-9eec-65e51c8b11dc/ENCFF000QTV.fastq.gz low read length poor library complexity, severe bottlenecking ENCFF098QIR bam bam unfiltered alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QTR/, /files/ENCFF643CGH/ 2176126018 ENCODE Processing Pipeline f805ba2b0a8de9a61054bdf13fa478f8 https://www.encodeproject.org/files/ENCFF098QIR/@@download/ENCFF098QIR.bam released s3://encode-public/2016/10/26/be9a2da2-3728-40a8-9582-aa6bf7e38226/ENCFF098QIR.bam ENCODE3 GRCh38 archived low read length poor library complexity, severe bottlenecking ENCFF996OUT bam bam unfiltered alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000QTV/ 1672736758 ENCODE Processing Pipeline cbfb5aa8c6b8e6f162c22b7024eaf46e https://www.encodeproject.org/files/ENCFF996OUT/@@download/ENCFF996OUT.bam released s3://encode-public/2016/10/26/8e35dd12-d1bc-48de-9b50-bf948c0ec6e0/ENCFF996OUT.bam ENCODE3 GRCh38 archived low read length poor library complexity, severe bottlenecking ENCFF317CKP bam bam alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000QTV/ 912547925 ENCODE Processing Pipeline 789ddb7dbe45827b69c5a281cdec201a https://www.encodeproject.org/files/ENCFF317CKP/@@download/ENCFF317CKP.bam released s3://encode-public/2016/10/26/a47c69ab-887b-4938-a15a-775dc8690369/ENCFF317CKP.bam ENCODE3 GRCh38 archived low read length poor library complexity, severe bottlenecking ENCFF287VDN bam bam alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QTR/, /files/ENCFF643CGH/ 1468743858 ENCODE Processing Pipeline 96f6879db3e923740d8a1870136e90d8 https://www.encodeproject.org/files/ENCFF287VDN/@@download/ENCFF287VDN.bam released s3://encode-public/2016/10/26/8d4663f8-6fcd-45b9-a390-ae8a67de02fa/ENCFF287VDN.bam ENCODE3 GRCh38 archived low read length poor library complexity, severe bottlenecking ENCFF454HMF bam bam alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000QTV/ 1000099817 ENCODE Processing Pipeline 9e5e42d87a9b77fa4e8e8323ecc26149 https://www.encodeproject.org/files/ENCFF454HMF/@@download/ENCFF454HMF.bam released s3://encode-public/2020/10/27/5ea3fbfc-c7b9-495a-9be3-2b094a923ab6/ENCFF454HMF.bam ENCODE4 v1.5.1 GRCh38 released low read length poor library complexity, severe bottlenecking ENCFF747MBS bam bam alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QTR/, /files/ENCFF110MCL/ 1596774789 ENCODE Processing Pipeline af959c58b211641e168199c3c708edbd https://www.encodeproject.org/files/ENCFF747MBS/@@download/ENCFF747MBS.bam released s3://encode-public/2020/10/27/dc33d737-7b37-4d53-86db-83adcc371fb8/ENCFF747MBS.bam ENCODE4 v1.5.1 GRCh38 released low read length poor library complexity, severe bottlenecking ENCFF463LUF bam bam unfiltered alignments hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000QTV/ 1659950092 ENCODE Processing Pipeline 9d09d9f0a15a37244ce553c3dd15117c https://www.encodeproject.org/files/ENCFF463LUF/@@download/ENCFF463LUF.bam released s3://encode-public/2017/06/16/6c9b0a03-f619-44fb-8975-ae17a525ffec/ENCFF463LUF.bam ENCODE3 hg19 archived low read length poor library complexity, severe bottlenecking ENCFF762YTA bam bam unfiltered alignments hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QTR/, /files/ENCFF807MUK/ 2165751884 ENCODE Processing Pipeline 269801a125f3dd0580034a6e39cbd448 https://www.encodeproject.org/files/ENCFF762YTA/@@download/ENCFF762YTA.bam released s3://encode-public/2017/06/16/87ce4123-2df2-40c1-a8ed-a0a4c5fe0841/ENCFF762YTA.bam ENCODE3 hg19 archived low read length poor library complexity, severe bottlenecking ENCFF269DQZ bam bam alignments hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000QTV/ 912617234 ENCODE Processing Pipeline 17bf9ed05f8c360ebba27d33dac7aed1 https://www.encodeproject.org/files/ENCFF269DQZ/@@download/ENCFF269DQZ.bam released s3://encode-public/2017/06/16/19a1ede6-ba04-4b6d-9022-6b70dced5607/ENCFF269DQZ.bam ENCODE3 hg19 archived low read length poor library complexity, severe bottlenecking ENCFF557DRA bam bam alignments hg19 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QTR/, /files/ENCFF807MUK/ 1468688610 ENCODE Processing Pipeline b8ccb36eea16dd8a1d2315a6ea9e56d0 https://www.encodeproject.org/files/ENCFF557DRA/@@download/ENCFF557DRA.bam released s3://encode-public/2017/06/16/e270074e-e842-4306-89a9-575a92d83fae/ENCFF557DRA.bam ENCODE3 hg19 archived low read length poor library complexity, severe bottlenecking ENCFF391WCF bam bam unfiltered alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000QTV/ 1483221517 ENCODE Processing Pipeline e07221e478a1cf81ceb152baa403d78b https://www.encodeproject.org/files/ENCFF391WCF/@@download/ENCFF391WCF.bam released s3://encode-public/2020/10/27/d09ef6ea-c0f5-4ec3-9875-1b7c7aedde49/ENCFF391WCF.bam ENCODE4 v1.5.1 GRCh38 released low read length poor library complexity, severe bottlenecking ENCFF688ELU bam bam unfiltered alignments GRCh38 ENCSR000BPP Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QTR/, /files/ENCFF110MCL/ 2122471492 ENCODE Processing Pipeline 916d4838b04829c6330042963236e654 https://www.encodeproject.org/files/ENCFF688ELU/@@download/ENCFF688ELU.bam released s3://encode-public/2020/10/27/ef56b2af-ec9e-4059-9036-1ade2cccc236/ENCFF688ELU.bam ENCODE4 v1.5.1 GRCh38 released low read length poor library complexity, severe bottlenecking ENCFF599JOR fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 5 5_1 36 single-ended 1200963109 Zhiping Weng, UMass b8b357b6d4ae309b56d75a93eabfb336 SRA:SRR1068386 https://www.encodeproject.org/files/ENCFF599JOR/@@download/ENCFF599JOR.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/49f17ebf-f00f-447b-8201-af8e3464574f/ENCFF599JOR.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF088FNX fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 5 5_1 36 single-ended 1309915206 Zhiping Weng, UMass eae034a8f29a354edf81c09e47763a92 SRA:SRR1068395 https://www.encodeproject.org/files/ENCFF088FNX/@@download/ENCFF088FNX.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/f052befd-0807-46fc-8095-208b132b9751/ENCFF088FNX.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF934FVW tagAlign tagAlign alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF606EYK/, /files/ENCFF825IBW/, /files/ENCFF054LZZ/, /files/ENCFF168STH/, /files/ENCFF175GQQ/ 203971002 Anshul Kundaje, Stanford 85510eb94f6385df21becda4fd1c2921 https://www.encodeproject.org/files/ENCFF934FVW/@@download/ENCFF934FVW.tagAlign.gz archived s3://encode-public/2016/05/02/ff33deaf-e5bc-4412-9999-93b9c9636b2d/ENCFF934FVW.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF825IBW fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 473979625 Zhiping Weng, UMass ee6ec9277256093fb65b9670d7f4fab9 SRA:SRR1067129 https://www.encodeproject.org/files/ENCFF825IBW/@@download/ENCFF825IBW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/27fb5b45-3fc2-4dc3-bc04-05553dae3dff/ENCFF825IBW.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF168STH fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 470710713 Zhiping Weng, UMass ca8408795e5aeffb163611121976ff88 SRA:SRR1067216 https://www.encodeproject.org/files/ENCFF168STH/@@download/ENCFF168STH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/3274f889-7d11-46a5-8f1a-a49315cfd512/ENCFF168STH.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF175GQQ fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 499412386 Zhiping Weng, UMass bb274fc6f072600a315065373e1e296f SRA:SRR1067249 https://www.encodeproject.org/files/ENCFF175GQQ/@@download/ENCFF175GQQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/11b40097-a40a-4e01-ab4d-84a632e1f08f/ENCFF175GQQ.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF054LZZ fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 500024319 Zhiping Weng, UMass f8e002c161ac44453b3dc2b37885fd05 SRA:SRR1067369 https://www.encodeproject.org/files/ENCFF054LZZ/@@download/ENCFF054LZZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/42b9a587-14a5-4fd4-81b8-d9afe3b89343/ENCFF054LZZ.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF606EYK fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 470007768 Zhiping Weng, UMass e4d49860c4dbecfd3673a4c7ee266aac SRA:SRR1067382 https://www.encodeproject.org/files/ENCFF606EYK/@@download/ENCFF606EYK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/1d3d6e49-38bb-4bde-a14d-8ddac806e0f5/ENCFF606EYK.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF963WVO bam bam unfiltered alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF175GQQ/, /files/ENCFF054LZZ/, /files/ENCFF168STH/, /files/ENCFF643CGH/, /files/ENCFF825IBW/, /files/ENCFF606EYK/ 2815214518 ENCODE Processing Pipeline 964a83e91b5c66e8762271dce75c4bf1 https://www.encodeproject.org/files/ENCFF963WVO/@@download/ENCFF963WVO.bam released s3://encode-public/2017/02/23/101046bb-782c-4add-908a-d4b9fe32410d/ENCFF963WVO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF532CVC bam bam alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF175GQQ/, /files/ENCFF054LZZ/, /files/ENCFF168STH/, /files/ENCFF807MUK/, /files/ENCFF825IBW/, /files/ENCFF606EYK/ 2022916850 ENCODE Processing Pipeline f35168a558c99f8ddd75a1ed5cb49017 https://www.encodeproject.org/files/ENCFF532CVC/@@download/ENCFF532CVC.bam released s3://encode-public/2017/02/23/d28ed0c6-725d-433a-b872-1f9f055ab6bb/ENCFF532CVC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF663PES bam bam unfiltered alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF175GQQ/, /files/ENCFF054LZZ/, /files/ENCFF168STH/, /files/ENCFF807MUK/, /files/ENCFF825IBW/, /files/ENCFF606EYK/ 2792515202 ENCODE Processing Pipeline da94d4cb7a68b5381099b143ea7b3a88 https://www.encodeproject.org/files/ENCFF663PES/@@download/ENCFF663PES.bam released s3://encode-public/2017/02/23/2d80326e-62df-4e32-b1f7-139d6f0a3336/ENCFF663PES.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF012EYH bam bam alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF175GQQ/, /files/ENCFF054LZZ/, /files/ENCFF168STH/, /files/ENCFF643CGH/, /files/ENCFF825IBW/, /files/ENCFF606EYK/ 2022784050 ENCODE Processing Pipeline 3723004bb58123263fd1499a99b2dd51 https://www.encodeproject.org/files/ENCFF012EYH/@@download/ENCFF012EYH.bam released s3://encode-public/2017/02/23/54adadfe-6557-47a7-b9f4-e6ceedded9ce/ENCFF012EYH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF084HEK fastq fastq reads ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 single-ended 1469581439 Zhiping Weng, UMass 598ecd9e87d41861caa98e2fe43f4230 SRA:SRR1068149 https://www.encodeproject.org/files/ENCFF084HEK/@@download/ENCFF084HEK.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/9b27dd84-9124-4545-8f45-ad189a8e5fe2/ENCFF084HEK.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF240CPK bam bam unfiltered alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF084HEK/ 1733688050 ENCODE Processing Pipeline 97234ce9b9dc111a6af921eb7cb669b2 https://www.encodeproject.org/files/ENCFF240CPK/@@download/ENCFF240CPK.bam released s3://encode-public/2016/12/19/ca201897-0102-4558-80eb-3f8466c95b92/ENCFF240CPK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF055AUC bam bam unfiltered alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF084HEK/ 1723847391 ENCODE Processing Pipeline 44264041e5cda95762642bc812ccefdd https://www.encodeproject.org/files/ENCFF055AUC/@@download/ENCFF055AUC.bam released s3://encode-public/2016/12/19/48c3b5c8-009e-4bd8-9a22-1a384e9ce88e/ENCFF055AUC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF782BSN bam bam alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF084HEK/ 1215563200 ENCODE Processing Pipeline 1d52a1ae01d132169ab6641c01cab8e3 https://www.encodeproject.org/files/ENCFF782BSN/@@download/ENCFF782BSN.bam released s3://encode-public/2016/12/19/13517c13-9cf2-45a8-8934-ac96be59153f/ENCFF782BSN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF594XQQ bam bam alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF084HEK/ 1215447356 ENCODE Processing Pipeline 245c22576a764f3f017a90be2b006bd4 https://www.encodeproject.org/files/ENCFF594XQQ/@@download/ENCFF594XQQ.bam released s3://encode-public/2016/12/19/97f5beda-8e55-4fe6-a21c-bb2949a9db80/ENCFF594XQQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF631FUP tagAlign tagAlign alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 /files/ENCFF084HEK/ 318804489 Anshul Kundaje, Stanford 762db837d8e0efa1fbbb996e41857012 https://www.encodeproject.org/files/ENCFF631FUP/@@download/ENCFF631FUP.tagAlign.gz archived s3://encode-public/2016/03/30/895f04d8-ee42-4c1c-aed6-e61df67f69ff/ENCFF631FUP.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF854MSW bam bam redacted unfiltered alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF113BMS/, /files/ENCFF807MUK/ 566181525 ENCODE Processing Pipeline 43d81b8676ed29a8ff281e2db6be4d0a https://www.encodeproject.org/files/ENCFF854MSW/@@download/ENCFF854MSW.bam released s3://encode-public/2018/01/31/a9fdb604-439e-4b09-bc69-01e8225d377e/ENCFF854MSW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF877CWH bam bam redacted unfiltered alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF113BMS/, /files/ENCFF643CGH/ 571732901 ENCODE Processing Pipeline 4e55eb8aa2d6a1509574e4948d9819af https://www.encodeproject.org/files/ENCFF877CWH/@@download/ENCFF877CWH.bam released s3://encode-public/2018/01/31/da94c4d9-10e1-4754-8e3c-aa6dca99770b/ENCFF877CWH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF578PLM bam bam redacted alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF113BMS/, /files/ENCFF807MUK/ 324191160 ENCODE Processing Pipeline 4f18971f9ee98284ac40f16723fbf8e6 https://www.encodeproject.org/files/ENCFF578PLM/@@download/ENCFF578PLM.bam released s3://encode-public/2018/01/31/69b82ab2-a239-42ea-be00-2c6ddc3f276e/ENCFF578PLM.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF579QQP bam bam redacted alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF113BMS/, /files/ENCFF643CGH/ 324148936 ENCODE Processing Pipeline 7630135effae37c16d4e0380ba4aa60e https://www.encodeproject.org/files/ENCFF579QQP/@@download/ENCFF579QQP.bam released s3://encode-public/2018/01/31/4d5ccb8c-8b40-4664-8dc9-6ce93eee7208/ENCFF579QQP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF542TJT bam bam redacted alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 4 4_1 36 /files/ENCFF880NQD/, /files/ENCFF643CGH/, /files/ENCFF042HQU/, /files/ENCFF949LER/, /files/ENCFF514FFU/, /files/ENCFF143CSZ/ 860257621 ENCODE Processing Pipeline aaa2d2a34d406e9b23b1d02de639a7da https://www.encodeproject.org/files/ENCFF542TJT/@@download/ENCFF542TJT.bam released s3://encode-public/2018/01/31/c7fd3236-b652-43f7-8a62-d3224903f61b/ENCFF542TJT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF721BXM bam bam redacted unfiltered alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 4 4_1 36 /files/ENCFF880NQD/, /files/ENCFF807MUK/, /files/ENCFF042HQU/, /files/ENCFF949LER/, /files/ENCFF514FFU/, /files/ENCFF143CSZ/ 1220447277 ENCODE Processing Pipeline 88f89a9c8c3ac1ff0401226373aa2ca9 https://www.encodeproject.org/files/ENCFF721BXM/@@download/ENCFF721BXM.bam released s3://encode-public/2018/01/31/02566f8a-9852-4da0-b501-6d0254db924b/ENCFF721BXM.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF825IPD bam bam redacted alignments hg19 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 4 4_1 36 /files/ENCFF880NQD/, /files/ENCFF807MUK/, /files/ENCFF042HQU/, /files/ENCFF949LER/, /files/ENCFF514FFU/, /files/ENCFF143CSZ/ 860224850 ENCODE Processing Pipeline d39bd6f80c2f06a9afc0b9999e6538b2 https://www.encodeproject.org/files/ENCFF825IPD/@@download/ENCFF825IPD.bam released s3://encode-public/2018/01/31/c5d56621-b524-4c67-87d4-f4c50ecc75b2/ENCFF825IPD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF197IGE bam bam redacted unfiltered alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 4 4_1 36 /files/ENCFF880NQD/, /files/ENCFF643CGH/, /files/ENCFF042HQU/, /files/ENCFF949LER/, /files/ENCFF514FFU/, /files/ENCFF143CSZ/ 1234736292 ENCODE Processing Pipeline 40b676a3112961e4817722b38791b3a2 https://www.encodeproject.org/files/ENCFF197IGE/@@download/ENCFF197IGE.bam released s3://encode-public/2018/01/31/f6fba62e-8957-42b5-980c-7c46b3177498/ENCFF197IGE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF074XTP bam bam redacted alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF113BMS/, /files/ENCFF110MCL/ 1060181094 ENCODE Processing Pipeline f192850023e531689eaf323f436b91f7 https://www.encodeproject.org/files/ENCFF074XTP/@@download/ENCFF074XTP.bam released s3://encode-public/2021/01/28/bf20212d-4bdc-42ca-8c39-da765433f18d/ENCFF074XTP.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF112IIL bam bam redacted alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF168STH/, /files/ENCFF825IBW/, /files/ENCFF110MCL/, /files/ENCFF606EYK/, /files/ENCFF054LZZ/, /files/ENCFF175GQQ/ 2183339482 ENCODE Processing Pipeline 5a594ffb9c7fbaf664187c84fdf5a4c5 https://www.encodeproject.org/files/ENCFF112IIL/@@download/ENCFF112IIL.bam released s3://encode-public/2021/01/28/6ce6c3ca-6b69-4e3b-bf0c-e33036ad50d8/ENCFF112IIL.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF666FUX bam bam redacted alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 5 5_1 36 /files/ENCFF599JOR/, /files/ENCFF110MCL/, /files/ENCFF088FNX/ 2287672376 ENCODE Processing Pipeline c884d7fe2c130ffeee53a018368aaa1c https://www.encodeproject.org/files/ENCFF666FUX/@@download/ENCFF666FUX.bam released s3://encode-public/2021/01/28/49b6cce4-ba2f-492d-bd7a-5394fcdac821/ENCFF666FUX.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF072ZFD bam bam redacted alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO707VTH/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF084HEK/ 1330400910 ENCODE Processing Pipeline 0147913572c78bacf40a4787d25b717f https://www.encodeproject.org/files/ENCFF072ZFD/@@download/ENCFF072ZFD.bam released s3://encode-public/2021/01/28/65091740-0338-4a98-ac5e-416c2e4d4412/ENCFF072ZFD.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF845EVM bam bam redacted alignments GRCh38 ENCSR707TMM Control ChIP-seq /human-donors/ENCDO410ZKA/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 4 4_1 36 /files/ENCFF949LER/, /files/ENCFF880NQD/, /files/ENCFF143CSZ/, /files/ENCFF110MCL/, /files/ENCFF042HQU/, /files/ENCFF514FFU/ 2654525701 ENCODE Processing Pipeline f04a9cd107d2aa468db4ece909596fb5 https://www.encodeproject.org/files/ENCFF845EVM/@@download/ENCFF845EVM.bam released s3://encode-public/2021/01/28/3ae84e21-d6e1-4df4-b557-1811e04b842c/ENCFF845EVM.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF829KOW fastq fastq reads ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 99259929 Kevin White, UChicago 6d0e128dacbcbdd210d8321cfeeb4b16 https://www.encodeproject.org/files/ENCFF829KOW/@@download/ENCFF829KOW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2018/01/05/52356fd5-e46f-4a33-ad9d-1188e5322672/ENCFF829KOW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF604QHR fastq fastq reads ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 111077424 Kevin White, UChicago 7da934b45804199d4aceee475d3bcee0 https://www.encodeproject.org/files/ENCFF604QHR/@@download/ENCFF604QHR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2018/01/05/f342c64a-17bf-4739-90c9-40938f2168e8/ENCFF604QHR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF038VDN fastq fastq reads ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 3 3_1 33 single-ended 130039124 Kevin White, UChicago 31eed34461a177c141457aa685cb1cd6 https://www.encodeproject.org/files/ENCFF038VDN/@@download/ENCFF038VDN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2018/01/05/f5a2c742-c0d2-48ef-ae14-44702db5985c/ENCFF038VDN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF729TPC bam bam alignments ce10 ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF829KOW/, /files/ENCFF604QHR/, /files/ENCFF038VDN/, /files/ENCFF987UMF/ 425591439 Kevin White, UChicago 441916e2e58e5f79448e698332c65410 https://www.encodeproject.org/files/ENCFF729TPC/@@download/ENCFF729TPC.bam released s3://encode-public/2018/01/05/a72076de-9c25-4733-9405-3517a5abacc0/ENCFF729TPC.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF637EBP bigWig bigWig read-depth normalized signal ce11 ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF045UKY/ 9954933 Kevin White, UChicago e7714cd1c7e17a23c0dd77910108c6ca https://www.encodeproject.org/files/ENCFF637EBP/@@download/ENCFF637EBP.bigWig released s3://encode-public/2018/01/05/dd3ef945-2e27-45a3-a927-5a2dbd9041c9/ENCFF637EBP.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF427BSW bigWig bigWig read-depth normalized signal ce10 ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF729TPC/ 9959652 Kevin White, UChicago b21c288a9c08f3d75cdfdd8b38a3a37c https://www.encodeproject.org/files/ENCFF427BSW/@@download/ENCFF427BSW.bigWig released s3://encode-public/2018/01/05/a7cb8171-35af-4fef-84ed-8c75d7ab5ed3/ENCFF427BSW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF045UKY bam bam alignments ce11 ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF829KOW/, /files/ENCFF604QHR/, /files/ENCFF038VDN/, /files/ENCFF586MOL/ 425994603 Kevin White, UChicago d9b166e923c1ed67ea26142d214ab7bd https://www.encodeproject.org/files/ENCFF045UKY/@@download/ENCFF045UKY.bam released s3://encode-public/2018/01/05/21bfc62d-383e-4202-9ea7-d9634b509da7/ENCFF045UKY.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF248GCE bigWig bigWig signal of unique reads ce10 ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF729TPC/ 10027948 Kevin White, UChicago 11ec2a56fd68ab364c205bb4d5aff23e https://www.encodeproject.org/files/ENCFF248GCE/@@download/ENCFF248GCE.bigWig released s3://encode-public/2018/01/05/bbafb532-2a64-4883-9017-e2557c7da839/ENCFF248GCE.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF911JLP bigWig bigWig signal of unique reads ce11 ENCSR090ETP Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2018-03-03 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF045UKY/ 10023592 Kevin White, UChicago 934458e12e705dbbe34aa8a89265221c https://www.encodeproject.org/files/ENCFF911JLP/@@download/ENCFF911JLP.bigWig released s3://encode-public/2018/01/05/4d560819-3cb4-491d-a436-1558fa47247d/ENCFF911JLP.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF631ORW bam bam redacted unfiltered alignments GRCh38 ENCSR253OIL Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF225BDJ/, /files/ENCFF643CGH/ 728661378 ENCODE Processing Pipeline 2579903c1d9da9623bb56a7e9db80f3a https://www.encodeproject.org/files/ENCFF631ORW/@@download/ENCFF631ORW.bam released s3://encode-public/2018/01/18/cb489ed6-2bfa-4f8c-be0e-cd2c833d6895/ENCFF631ORW.bam ENCODE3 GRCh38 archived low read length ENCFF434FXR bam bam redacted alignments GRCh38 ENCSR253OIL Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF225BDJ/, /files/ENCFF643CGH/ 457926170 ENCODE Processing Pipeline f9f5c3773c71b72073d5ce257c586e83 https://www.encodeproject.org/files/ENCFF434FXR/@@download/ENCFF434FXR.bam released s3://encode-public/2018/01/18/5909f875-9a9f-4501-ade1-99cda5de0e80/ENCFF434FXR.bam ENCODE3 GRCh38 archived low read length ENCFF359VDU bam bam redacted unfiltered alignments hg19 ENCSR253OIL Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF225BDJ/, /files/ENCFF807MUK/ 720956648 ENCODE Processing Pipeline 51785cbf077d8e82dbfbb2d2647e215d https://www.encodeproject.org/files/ENCFF359VDU/@@download/ENCFF359VDU.bam released s3://encode-public/2018/01/19/39ce449d-1939-414c-99e7-f1d4b09344b8/ENCFF359VDU.bam ENCODE3 hg19 archived low read length ENCFF538SXB bam bam redacted alignments hg19 ENCSR253OIL Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF225BDJ/, /files/ENCFF807MUK/ 457854827 ENCODE Processing Pipeline 452422707481a435d645976dcf46e756 https://www.encodeproject.org/files/ENCFF538SXB/@@download/ENCFF538SXB.bam released s3://encode-public/2018/01/19/a02cae62-a965-4c9c-bd22-82fa51e3f402/ENCFF538SXB.bam ENCODE3 hg19 archived low read length ENCFF382FKE bam bam redacted alignments GRCh38 ENCSR253OIL Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF225BDJ/, /files/ENCFF110MCL/ 1598599967 ENCODE Processing Pipeline 62d9e5d41108a32160b4c298fb1367c6 https://www.encodeproject.org/files/ENCFF382FKE/@@download/ENCFF382FKE.bam released s3://encode-public/2021/01/27/d30d4d6b-111e-4737-ac93-239987009506/ENCFF382FKE.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF219NZF bam bam alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF680IWG/ 1260670369 Tim Reddy, Duke 376051eed48550639ebce3cb13221e1b https://www.encodeproject.org/files/ENCFF219NZF/@@download/ENCFF219NZF.bam released s3://encode-public/2017/10/13/9bacc05a-81c0-4923-832b-bb9651b78497/ENCFF219NZF.bam Lab custom GRCh38 archived ENCFF479FUM bam bam alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF743YGE/ 1051972910 Tim Reddy, Duke 2c6ebbb362628b1742665bfc815c2e3c https://www.encodeproject.org/files/ENCFF479FUM/@@download/ENCFF479FUM.bam released s3://encode-public/2017/10/13/5b7b06d3-10d0-4904-93e8-d3783cebc91e/ENCFF479FUM.bam Lab custom GRCh38 archived ENCFF743YGE fastq fastq reads ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 954376861 Tim Reddy, Duke 89929a9c5c88e913aa6a73959b7161a4 SRA:SRR14638248 https://www.encodeproject.org/files/ENCFF743YGE/@@download/ENCFF743YGE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/eb65a404-b253-4048-8f79-9e241256e024/ENCFF743YGE.fastq.gz ENCFF680IWG fastq fastq reads ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 1126669187 Tim Reddy, Duke 2ad09da8e05ab48d4be7ca316bacc41f SRA:SRR14638250 https://www.encodeproject.org/files/ENCFF680IWG/@@download/ENCFF680IWG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/e1e9d482-edf3-432a-a19d-262683a62d5a/ENCFF680IWG.fastq.gz ENCFF973KJA bam bam alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF151SVH/ 2126532593 Tim Reddy, Duke 8ac8072322d5da22f019b0041c7a1f05 https://www.encodeproject.org/files/ENCFF973KJA/@@download/ENCFF973KJA.bam released s3://encode-public/2017/10/13/e6168b07-38c9-4e94-8f0a-e39bf4af9c69/ENCFF973KJA.bam Lab custom GRCh38 archived ENCFF151SVH fastq fastq reads ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 1974036260 Tim Reddy, Duke 724185de72331c7454a04b60e5a3a1f6 SRA:SRR14638249 https://www.encodeproject.org/files/ENCFF151SVH/@@download/ENCFF151SVH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/bffb72a4-28e5-4f77-98b9-358feb1fd186/ENCFF151SVH.fastq.gz ENCFF488CXR bam bam unfiltered alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF151SVH/ 2636039312 ENCODE Processing Pipeline 75ce8bdd22b2b196c0d458f82ec9d9b3 https://www.encodeproject.org/files/ENCFF488CXR/@@download/ENCFF488CXR.bam released s3://encode-public/2020/09/29/db243c42-9eee-4f3a-b9aa-04858da8dcee/ENCFF488CXR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF513YCV bam bam unfiltered alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF743YGE/ 1299742405 ENCODE Processing Pipeline ab923207eb8d15a4de245ff9c1842598 https://www.encodeproject.org/files/ENCFF513YCV/@@download/ENCFF513YCV.bam released s3://encode-public/2020/09/29/202adb0d-2df3-4337-9b46-f160216a3ab2/ENCFF513YCV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF662ZRN bam bam alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF743YGE/ 1081190818 ENCODE Processing Pipeline 2c96cf62dd4f502fd9829666c0f7a092 https://www.encodeproject.org/files/ENCFF662ZRN/@@download/ENCFF662ZRN.bam released s3://encode-public/2020/09/29/b6d063b2-f1c6-49f4-9908-5535f93828d5/ENCFF662ZRN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF197GPY bam bam alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF151SVH/ 2187151408 ENCODE Processing Pipeline 16d55a936ffbd19d9c7b4cc2d2c72100 https://www.encodeproject.org/files/ENCFF197GPY/@@download/ENCFF197GPY.bam released s3://encode-public/2020/09/29/cf0b8bc0-b22a-45b7-9b85-b28625eff1e7/ENCFF197GPY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF563WYI bam bam alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF680IWG/, /files/ENCFF110MCL/ 1263760072 ENCODE Processing Pipeline fd2afd6d5d325e71a839260aed85420a https://www.encodeproject.org/files/ENCFF563WYI/@@download/ENCFF563WYI.bam released s3://encode-public/2020/09/29/739bbe36-b986-4a9f-bd9f-5a621136eaef/ENCFF563WYI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF756HSH bam bam unfiltered alignments GRCh38 ENCSR324VMZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF680IWG/, /files/ENCFF110MCL/ 1586118771 ENCODE Processing Pipeline e4cce88c6581a7ab8cd976e364ae4452 https://www.encodeproject.org/files/ENCFF756HSH/@@download/ENCFF756HSH.bam released s3://encode-public/2020/09/29/6d808766-48ae-433f-b299-ac9dfc4b5c57/ENCFF756HSH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF726GQB bam bam redacted unfiltered alignments GRCh38 ENCSR625UHH Control ChIP-seq /human-donors/ENCDO535TMW/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF955FMW/ 653140187 ENCODE Processing Pipeline cd43bb32b91a8d3d544518f32a788ddd https://www.encodeproject.org/files/ENCFF726GQB/@@download/ENCFF726GQB.bam released s3://encode-public/2018/01/18/6fed1071-4f8e-49d1-9c23-4bc40fc9de35/ENCFF726GQB.bam ENCODE3 GRCh38 archived low read length ENCFF110INE bam bam redacted alignments GRCh38 ENCSR625UHH Control ChIP-seq /human-donors/ENCDO535TMW/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF955FMW/ 449433399 ENCODE Processing Pipeline fe98dd4039bf1ee59482a4108b7ad216 https://www.encodeproject.org/files/ENCFF110INE/@@download/ENCFF110INE.bam released s3://encode-public/2018/01/18/52efaa40-35c4-4b22-b39d-5110d1ec7bd7/ENCFF110INE.bam ENCODE3 GRCh38 archived low read length ENCFF566HKD bam bam redacted unfiltered alignments hg19 ENCSR625UHH Control ChIP-seq /human-donors/ENCDO535TMW/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF955FMW/ 646552698 ENCODE Processing Pipeline 860310e00b2264995a117cccbfb005f0 https://www.encodeproject.org/files/ENCFF566HKD/@@download/ENCFF566HKD.bam released s3://encode-public/2018/01/19/2c85375c-f47d-44e7-956a-4db5758aeb1f/ENCFF566HKD.bam ENCODE3 hg19 archived low read length ENCFF792TOC bam bam redacted alignments hg19 ENCSR625UHH Control ChIP-seq /human-donors/ENCDO535TMW/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF955FMW/ 449427296 ENCODE Processing Pipeline 0ea9b5a367accd971db5f884919b48f1 https://www.encodeproject.org/files/ENCFF792TOC/@@download/ENCFF792TOC.bam released s3://encode-public/2018/01/19/c8f3f757-cd5d-4dbc-b5a3-bc2ef03b30e0/ENCFF792TOC.bam ENCODE3 hg19 archived low read length ENCFF244DJY bam bam redacted alignments GRCh38 ENCSR625UHH Control ChIP-seq /human-donors/ENCDO535TMW/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF955FMW/ 1435908719 ENCODE Processing Pipeline 7b9d1f46a147b60638c5e9797fe39f83 https://www.encodeproject.org/files/ENCFF244DJY/@@download/ENCFF244DJY.bam released s3://encode-public/2021/01/27/71b03c28-f801-448e-88d3-12c632580485/ENCFF244DJY.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF101PAJ fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 129963482 Bradley Bernstein, Broad b1da6526e6027cee815ff2d4b9f94c3a SRA:SRR13803827 https://www.encodeproject.org/files/ENCFF101PAJ/@@download/ENCFF101PAJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/297ddc46-ca2b-46ef-ab07-1dc8bbd618f8/ENCFF101PAJ.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF600PHE fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 124610388 Bradley Bernstein, Broad e755742e195916fa0431b0906112b96b SRA:SRR13803831 https://www.encodeproject.org/files/ENCFF600PHE/@@download/ENCFF600PHE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/eccb9abe-7dcf-4c63-84cf-7d0cd4f502c4/ENCFF600PHE.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF138SVT fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 127867684 Bradley Bernstein, Broad 3f0facf4800ec7587eaa18193446aa2c SRA:SRR13803832 https://www.encodeproject.org/files/ENCFF138SVT/@@download/ENCFF138SVT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/7c2e3153-9af8-4bef-ade6-cb8609c5ab5f/ENCFF138SVT.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF051IAZ fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 128306550 Bradley Bernstein, Broad 26589d3ad7c9562bc095260032ab9a7f SRA:SRR13803833 https://www.encodeproject.org/files/ENCFF051IAZ/@@download/ENCFF051IAZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/2b5d79d4-e155-469b-acf0-e0fe1cbb300c/ENCFF051IAZ.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF301IZK fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 125098141 Bradley Bernstein, Broad 50e3ca0367f87ea70123e3c9a65b3c15 SRA:SRR13803834 https://www.encodeproject.org/files/ENCFF301IZK/@@download/ENCFF301IZK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/710f4091-e091-4625-baa9-45965b187d50/ENCFF301IZK.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF639MLM fastq fastq reads 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inconsistent platforms ENCFF123ARU fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 128462852 Bradley Bernstein, Broad ccc780defa17665a234aed128b30ae9d SRA:SRR13803837 https://www.encodeproject.org/files/ENCFF123ARU/@@download/ENCFF123ARU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/f6cf5a3f-88af-480a-9f7e-419251f97ff7/ENCFF123ARU.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF380UKT fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 448450518 Bradley Bernstein, Broad a15400b443196ab623f181b29206623d SRA:SRR13803838 https://www.encodeproject.org/files/ENCFF380UKT/@@download/ENCFF380UKT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/878230e1-1637-4957-b714-5521ff2cad04/ENCFF380UKT.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF956GBC fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 617244877 Bradley Bernstein, Broad 44482c5b5bbced39b0b5c1f22b68917a SRA:SRR13803828 https://www.encodeproject.org/files/ENCFF956GBC/@@download/ENCFF956GBC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/19e9055d-be05-4c2b-81cd-0177ca56818e/ENCFF956GBC.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF758EHO fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 434326818 Bradley Bernstein, Broad 66067905be8ddf620c349bccd41c8883 SRA:SRR13803829 https://www.encodeproject.org/files/ENCFF758EHO/@@download/ENCFF758EHO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/68714cbc-11b2-42f9-ac79-8d72d5b4fc32/ENCFF758EHO.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF172FKO fastq fastq reads ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 598390821 Bradley Bernstein, Broad c44c65f189bbc17817a6a68ca2e3d5cf SRA:SRR13803830 https://www.encodeproject.org/files/ENCFF172FKO/@@download/ENCFF172FKO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/cce53124-8064-488a-9710-e35ff231d8ac/ENCFF172FKO.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF584VRG bam bam unfiltered alignments GRCh38 ENCSR327PYZ Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF758EHO/, 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/files/ENCFF172FKO/, /files/ENCFF301IZK/ 2236677189 ENCODE Processing Pipeline af83ddab8cf3f80f91daa1ad2ebf1436 https://www.encodeproject.org/files/ENCFF874SDX/@@download/ENCFF874SDX.bam released s3://encode-public/2020/07/19/967468df-8d93-4db2-a8b5-f5dca62f080f/ENCFF874SDX.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF780WKN fastq fastq reads ENCSR564GJK Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1836784473 Bradley Bernstein, Broad 4edbbf56a870c665228203be2f5e1f3a SRA:SRR13804000 https://www.encodeproject.org/files/ENCFF780WKN/@@download/ENCFF780WKN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/0515adb9-8520-4ae2-a332-08b87ef06fed/ENCFF780WKN.fastq.gz ENCFF703NAD fastq fastq reads ENCSR564GJK Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1432882585 Bradley Bernstein, Broad 38e4f4e0ff5dcb67c9702fa6f8555770 SRA:SRR13804001 https://www.encodeproject.org/files/ENCFF703NAD/@@download/ENCFF703NAD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/1fab5d06-2a37-4501-9903-c6ac4b7c0a8a/ENCFF703NAD.fastq.gz ENCFF516XOC bam bam unfiltered alignments GRCh38 ENCSR564GJK Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF703NAD/, /files/ENCFF780WKN/, /files/ENCFF110MCL/ 3488770789 ENCODE Processing Pipeline 2f4e0c76abe96a173beb0ae721e8757d https://www.encodeproject.org/files/ENCFF516XOC/@@download/ENCFF516XOC.bam released s3://encode-public/2020/07/19/7bb2455d-c779-491a-9511-e06b187521ee/ENCFF516XOC.bam ENCODE4 v1.5.0 GRCh38 released ENCFF789UZU bam bam alignments GRCh38 ENCSR564GJK Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF703NAD/, /files/ENCFF780WKN/, /files/ENCFF110MCL/ 2856756686 ENCODE Processing Pipeline a2105d7c019dca4edb06e72e47b90de4 https://www.encodeproject.org/files/ENCFF789UZU/@@download/ENCFF789UZU.bam released s3://encode-public/2020/07/19/48bf40ff-a131-4a39-ad3b-3eb9674f64f6/ENCFF789UZU.bam ENCODE4 v1.5.0 GRCh38 released ENCFF996SJS fastq fastq reads ENCSR914HOJ Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1608859273 Bradley Bernstein, Broad 5de082aacbb83b62d2be8cc15c2b087e SRA:SRR13804572 https://www.encodeproject.org/files/ENCFF996SJS/@@download/ENCFF996SJS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/29c6867c-27a5-43b4-beb7-e0651b4af7e6/ENCFF996SJS.fastq.gz ENCFF218RJS fastq fastq reads ENCSR914HOJ Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1625380369 Bradley Bernstein, Broad 3d61bd9baefa55a278fd2569910d715e SRA:SRR13804573 https://www.encodeproject.org/files/ENCFF218RJS/@@download/ENCFF218RJS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/48f97d4b-fd15-45aa-95f7-fe200b28690a/ENCFF218RJS.fastq.gz ENCFF016KYS bam bam unfiltered alignments GRCh38 ENCSR914HOJ Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF996SJS/, /files/ENCFF110MCL/, /files/ENCFF218RJS/ 3162998934 ENCODE Processing Pipeline 4861f9fc524299814d04708a6d9d04ca https://www.encodeproject.org/files/ENCFF016KYS/@@download/ENCFF016KYS.bam released s3://encode-public/2020/07/19/fb205d7a-9dc8-42f9-88b1-a30fd849d888/ENCFF016KYS.bam ENCODE4 v1.5.0 GRCh38 released ENCFF104COR bam bam alignments GRCh38 ENCSR914HOJ Control ChIP-seq /human-donors/ENCDO536XJQ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF996SJS/, /files/ENCFF110MCL/, /files/ENCFF218RJS/ 2465641076 ENCODE Processing Pipeline bc3fc4954f934b713173dd50964548f9 https://www.encodeproject.org/files/ENCFF104COR/@@download/ENCFF104COR.bam released s3://encode-public/2020/07/19/1f086fca-af93-4edc-a9a4-cc30cc1b0f55/ENCFF104COR.bam ENCODE4 v1.5.0 GRCh38 released ENCFF707ZPG fastq fastq reads ENCSR561ULE Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 288525950 Kevin White, UChicago 4af5e1d7e636c891f7ce3ce04a1d05bc https://www.encodeproject.org/files/ENCFF707ZPG/@@download/ENCFF707ZPG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/09/115b76d7-2350-47bb-a55c-c61102555a77/ENCFF707ZPG.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF708BDL bam bam alignments ce10 ENCSR561ULE Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF707ZPG/ 301096854 Kevin White, UChicago 3fbbb95e45e341f3b1f56f67bd58f958 https://www.encodeproject.org/files/ENCFF708BDL/@@download/ENCFF708BDL.bam released s3://encode-public/2016/05/10/9ea4203d-20c5-4c56-a67b-631d5935eb13/ENCFF708BDL.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF813CFC bam bam alignments ce11 ENCSR561ULE Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF707ZPG/ 301333012 Kevin White, UChicago 63d951271d9fd2e21bfc4ca194066782 https://www.encodeproject.org/files/ENCFF813CFC/@@download/ENCFF813CFC.bam released s3://encode-public/2016/05/10/60bc7783-8a32-43d2-89ae-4d8e27471bbd/ENCFF813CFC.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF478EYG bigWig bigWig read-depth normalized signal ce10 ENCSR561ULE Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF708BDL/ 9982573 Kevin White, UChicago cbf048d078390368758bb72b22a6658b https://www.encodeproject.org/files/ENCFF478EYG/@@download/ENCFF478EYG.bigWig released s3://encode-public/2016/05/11/a319d83e-d8ea-490d-be2d-961ab25ed0bd/ENCFF478EYG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF899ASX bigWig bigWig signal of unique reads ce10 ENCSR561ULE Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF708BDL/ 9950886 Kevin White, UChicago ec9c4ba5cf7ada025acdd2d782696ea6 https://www.encodeproject.org/files/ENCFF899ASX/@@download/ENCFF899ASX.bigWig released s3://encode-public/2016/05/11/0b81110f-f22b-42ee-8256-6dae3decd7ef/ENCFF899ASX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF307PPQ bigWig bigWig read-depth normalized signal ce11 ENCSR561ULE Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF813CFC/ 9980561 Kevin White, UChicago 81ff2c293b99cf46a7c63972db2a5792 https://www.encodeproject.org/files/ENCFF307PPQ/@@download/ENCFF307PPQ.bigWig released s3://encode-public/2016/05/11/6879c9a6-1c85-4d93-9e78-e914288ab4ca/ENCFF307PPQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF695YRQ bigWig bigWig signal of unique reads ce11 ENCSR561ULE Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF813CFC/ 9946671 Kevin White, UChicago 0dddd656ef9d57b31581ac04bd1bb583 https://www.encodeproject.org/files/ENCFF695YRQ/@@download/ENCFF695YRQ.bigWig released s3://encode-public/2016/05/11/7cbea3cf-12b1-4e51-a181-f184af2ea184/ENCFF695YRQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF000OSF bam bam alignments hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 /files/ENCFF000OST/ 1353537662 Richard Myers, HAIB 64fadec2c44b78a7f09aa6e52ab51a48 https://www.encodeproject.org/files/ENCFF000OSF/@@download/ENCFF000OSF.bam archived s3://encode-public/2012/01/23/8e799522-a6c9-4db7-828f-9e85e6877fdf/ENCFF000OSF.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000OSH bam bam alignments hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000OSS/ 2196661397 Richard Myers, HAIB f6e70caa85340b00da99a8a0a386b2b2 https://www.encodeproject.org/files/ENCFF000OSH/@@download/ENCFF000OSH.bam archived s3://encode-public/2012/01/23/eb3329de-0789-4c8b-b158-5110c9042467/ENCFF000OSH.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000OSJ bigWig bigWig raw signal hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 12311090 Richard Myers, HAIB cba46c9f3b607d95e5b56c7fd4181bd0 https://www.encodeproject.org/files/ENCFF000OSJ/@@download/ENCFF000OSJ.bigWig archived s3://encode-public/2012/01/23/198c9e61-3439-4506-8dcf-485f5297c68a/ENCFF000OSJ.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000OSK bigWig bigWig raw signal hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 245890824 Richard Myers, HAIB 4ea2ddb5d1165e50893d8b33bd40e055 https://www.encodeproject.org/files/ENCFF000OSK/@@download/ENCFF000OSK.bigWig archived s3://encode-public/2012/01/23/0020f67f-8e00-416d-a778-e7e589283c3e/ENCFF000OSK.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000OSS fastq fastq reads ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 2134033327 Richard Myers, HAIB 9add78077b949e200ac59e33c69debbc https://www.encodeproject.org/files/ENCFF000OSS/@@download/ENCFF000OSS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/324ff3ca-446f-4075-bac2-c026653ba904/ENCFF000OSS.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF000OST fastq fastq reads ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 single-ended 1360629391 Richard Myers, HAIB 6836098a835b20d31687416c7d65e92f https://www.encodeproject.org/files/ENCFF000OST/@@download/ENCFF000OST.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/255a9ed2-8d90-462f-9887-6f94f4b94961/ENCFF000OST.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF618AQB bam bam alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000OSS/ 1737586735 ENCODE Processing Pipeline ba2db1f17ab57468839eb1245e458c36 https://www.encodeproject.org/files/ENCFF618AQB/@@download/ENCFF618AQB.bam released s3://encode-public/2020/10/27/74a67acd-c8d9-4be5-aabe-c279fbabb79e/ENCFF618AQB.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF691TKO bam bam alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000OSS/ 1588315061 ENCODE Processing Pipeline fb63731fafbec49a51a4d95f34e6857e https://www.encodeproject.org/files/ENCFF691TKO/@@download/ENCFF691TKO.bam released s3://encode-public/2017/07/08/0c0108be-315e-4e8c-b53a-c65c3f8ae85e/ENCFF691TKO.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF263JCI bam bam unfiltered alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000OSS/ 2403500897 ENCODE Processing Pipeline 452df306442d4106c9b2255304e9d44c https://www.encodeproject.org/files/ENCFF263JCI/@@download/ENCFF263JCI.bam released s3://encode-public/2017/07/08/67573705-2104-4f4b-8f64-a3cf0987fb10/ENCFF263JCI.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF986NRA bam bam unfiltered alignments hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000OST/, /files/ENCFF807MUK/ 1228582991 ENCODE Processing Pipeline 3b5734522a3413c1b6bbdaf24f3b044e https://www.encodeproject.org/files/ENCFF986NRA/@@download/ENCFF986NRA.bam released s3://encode-public/2017/07/10/88d23f83-642f-403a-949a-603b936b2d43/ENCFF986NRA.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF056VRR bam bam alignments hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000OST/, /files/ENCFF807MUK/ 878847017 ENCODE Processing Pipeline da519c871d524a2716b5a90c8654c665 https://www.encodeproject.org/files/ENCFF056VRR/@@download/ENCFF056VRR.bam released s3://encode-public/2017/07/10/d2e6e8bf-38f8-48ed-aa24-d3cdcb4b88d7/ENCFF056VRR.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF241IEZ bam bam unfiltered alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000OST/, /files/ENCFF643CGH/ 1230672382 ENCODE Processing Pipeline 24b601ecd97c45b5c3be8b82f0b0791c https://www.encodeproject.org/files/ENCFF241IEZ/@@download/ENCFF241IEZ.bam released s3://encode-public/2017/07/10/9c96a1bc-61ed-4063-a18b-46ac34babe32/ENCFF241IEZ.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF043TVE bam bam alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000OST/, /files/ENCFF643CGH/ 878663933 ENCODE Processing Pipeline eaef465976703600c0585ae72c1367d5 https://www.encodeproject.org/files/ENCFF043TVE/@@download/ENCFF043TVE.bam released s3://encode-public/2017/07/10/a10cd441-bd44-424f-81f8-465f49445562/ENCFF043TVE.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF576QJQ bam bam unfiltered alignments hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OSS/ 2394508563 ENCODE Processing Pipeline a01250c97e944dd79786a1174bec7f98 https://www.encodeproject.org/files/ENCFF576QJQ/@@download/ENCFF576QJQ.bam released s3://encode-public/2017/07/10/69f6ef5c-6eb6-470d-8ff0-808d399393cf/ENCFF576QJQ.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF992TZM bam bam alignments hg19 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OSS/ 1588461183 ENCODE Processing Pipeline b595ba01b153aea3c9ca5d766dbe7a56 https://www.encodeproject.org/files/ENCFF992TZM/@@download/ENCFF992TZM.bam released s3://encode-public/2017/07/10/58daa8bf-e891-46b4-add6-17e466bdf016/ENCFF992TZM.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF162TEO bam bam unfiltered alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000OSS/ 2331673765 ENCODE Processing Pipeline a14762fc173ca1a284b9b4683b750ee6 https://www.encodeproject.org/files/ENCFF162TEO/@@download/ENCFF162TEO.bam released s3://encode-public/2020/10/27/aefdd352-cb33-43b8-ab26-e6be0dedbbed/ENCFF162TEO.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF412WCV bam bam unfiltered alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000OST/ 1196377932 ENCODE Processing Pipeline cf2a98a5a428b9d60750c3b4410eb76c https://www.encodeproject.org/files/ENCFF412WCV/@@download/ENCFF412WCV.bam released s3://encode-public/2020/10/27/d3164f90-c4cd-4353-86de-5577f5c70ea0/ENCFF412WCV.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF855LUO bam bam alignments GRCh38 ENCSR000BPG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000OST/ 968234368 ENCODE Processing Pipeline 0f3aa468c67400257f8d51bde1d3a97c https://www.encodeproject.org/files/ENCFF855LUO/@@download/ENCFF855LUO.bam released s3://encode-public/2020/10/27/46e69948-0d9a-4803-81dc-e08f7f6b8618/ENCFF855LUO.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF940YPE fastq fastq reads ENCSR810EEJ Control ChIP-seq /worm-donors/ENCDO602VNC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190310/'], '@type': ['Target', 'Item'], 'name': 'Y55F3AM.14-celegans', 'label': 'Y55F3AM.14', '@id': '/targets/Y55F3AM.14-celegans/', 'title': 'Y55F3AM.14 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c021aebe-20a5-4194-94e7-c3bf3145b63f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 538495516 Kevin White, UChicago 6fbf0100ff1cc02a5b9a262bda8d64c2 https://www.encodeproject.org/files/ENCFF940YPE/@@download/ENCFF940YPE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/98688fe5-c0b6-449a-9a87-88f265c9a069/ENCFF940YPE.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF227GEP bam bam alignments ce11 ENCSR810EEJ Control ChIP-seq /worm-donors/ENCDO602VNC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190310/'], '@type': ['Target', 'Item'], 'name': 'Y55F3AM.14-celegans', 'label': 'Y55F3AM.14', '@id': '/targets/Y55F3AM.14-celegans/', 'title': 'Y55F3AM.14 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c021aebe-20a5-4194-94e7-c3bf3145b63f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF940YPE/, /files/ENCFF586MOL/ 695971362 Kevin White, UChicago 08e296bf1734a3375d6f3c3c5ae7e264 https://www.encodeproject.org/files/ENCFF227GEP/@@download/ENCFF227GEP.bam released s3://encode-public/2018/03/01/3833ca81-6b45-4f35-9cc2-fcaa11e65f29/ENCFF227GEP.bam Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF282UPW bigWig bigWig read-depth normalized signal ce11 ENCSR810EEJ Control ChIP-seq /worm-donors/ENCDO602VNC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190310/'], '@type': ['Target', 'Item'], 'name': 'Y55F3AM.14-celegans', 'label': 'Y55F3AM.14', '@id': '/targets/Y55F3AM.14-celegans/', 'title': 'Y55F3AM.14 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c021aebe-20a5-4194-94e7-c3bf3145b63f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF227GEP/ 9949521 Kevin White, UChicago ccf9ccd136a0ec857154f68aa300792c https://www.encodeproject.org/files/ENCFF282UPW/@@download/ENCFF282UPW.bigWig released s3://encode-public/2018/03/01/6d7b0d7c-f565-45de-bec2-6f6a17609dd1/ENCFF282UPW.bigWig Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF883ERG bigWig bigWig signal of unique reads ce11 ENCSR810EEJ Control ChIP-seq /worm-donors/ENCDO602VNC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190310/'], '@type': ['Target', 'Item'], 'name': 'Y55F3AM.14-celegans', 'label': 'Y55F3AM.14', '@id': '/targets/Y55F3AM.14-celegans/', 'title': 'Y55F3AM.14 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c021aebe-20a5-4194-94e7-c3bf3145b63f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF227GEP/ 9939398 Kevin White, UChicago aad0113638f118487494798e42c61ba4 https://www.encodeproject.org/files/ENCFF883ERG/@@download/ENCFF883ERG.bigWig released s3://encode-public/2018/03/01/6514de15-af5d-4d21-9ba6-ab2c414cff4d/ENCFF883ERG.bigWig Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF675UAE fastq fastq reads ENCSR470WSI Control ChIP-seq /fly-donors/ENCDO364FSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38469/'], '@type': ['Target', 'Item'], 'name': 'scrt-dmelanogaster', 'label': 'scrt', '@id': '/targets/scrt-dmelanogaster/', 'title': 'scrt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68c5adfd-3fc5-4479-93f0-2ff6a8c146fb', 'status': 'released'} dm3 3L 3933914 4035084 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 758374745 Kevin White, UChicago dfffacba6f75d3114a41c1380d613323 https://www.encodeproject.org/files/ENCFF675UAE/@@download/ENCFF675UAE.fastq.gz Illumina HiSeq 4000 /files/ENCFF901GTY/ released s3://encode-public/2018/02/01/ab180db9-1071-45e4-b029-c11097eae4f6/ENCFF675UAE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF521BRP bam bam alignments dm6 ENCSR470WSI Control ChIP-seq /fly-donors/ENCDO364FSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38469/'], '@type': ['Target', 'Item'], 'name': 'scrt-dmelanogaster', 'label': 'scrt', '@id': '/targets/scrt-dmelanogaster/', 'title': 'scrt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68c5adfd-3fc5-4479-93f0-2ff6a8c146fb', 'status': 'released'} dm3 3L 3933914 4035084 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF675UAE/, /files/ENCFF479RCH/ 1003314539 Kevin White, UChicago 9d6eb880dd66deb8d45629ee5c45c8f7 https://www.encodeproject.org/files/ENCFF521BRP/@@download/ENCFF521BRP.bam released s3://encode-public/2018/02/02/ace74b6f-7284-4bb2-819e-f2927f8ba067/ENCFF521BRP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF169QUO bigWig bigWig signal of unique reads dm6 ENCSR470WSI Control ChIP-seq /fly-donors/ENCDO364FSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38469/'], '@type': ['Target', 'Item'], 'name': 'scrt-dmelanogaster', 'label': 'scrt', '@id': '/targets/scrt-dmelanogaster/', 'title': 'scrt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68c5adfd-3fc5-4479-93f0-2ff6a8c146fb', 'status': 'released'} dm3 3L 3933914 4035084 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF521BRP/ 17512380 Kevin White, UChicago f3b4d53d425d991fb642a33908a5a5ba https://www.encodeproject.org/files/ENCFF169QUO/@@download/ENCFF169QUO.bigWig released s3://encode-public/2018/02/02/b0f74141-c35e-418d-8b1d-201388e2c2d6/ENCFF169QUO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF499KIB bigWig bigWig read-depth normalized signal dm6 ENCSR470WSI Control ChIP-seq /fly-donors/ENCDO364FSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38469/'], '@type': ['Target', 'Item'], 'name': 'scrt-dmelanogaster', 'label': 'scrt', '@id': '/targets/scrt-dmelanogaster/', 'title': 'scrt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '68c5adfd-3fc5-4479-93f0-2ff6a8c146fb', 'status': 'released'} dm3 3L 3933914 4035084 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF521BRP/ 17533354 Kevin White, UChicago a86e0603da12ca1b896c3cef1a242647 https://www.encodeproject.org/files/ENCFF499KIB/@@download/ENCFF499KIB.bigWig released s3://encode-public/2018/02/02/d0996b11-26e9-4c2c-a7a2-f7711274691f/ENCFF499KIB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF471IIR fastq fastq reads ENCSR082YVU Control ChIP-seq /fly-donors/ENCDO496CJL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42300/'], '@type': ['Target', 'Item'], 'name': 'sqz-dmelanogaster', 'label': 'sqz', '@id': '/targets/sqz-dmelanogaster/', 'title': 'sqz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'c54ee573-59c1-4976-8646-aa972f50ae0c', 'status': 'released'} dm3 3R 14984715 15003930 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 775267963 Kevin White, UChicago db9ad4e91bac40c718c0f07fc736b8f3 https://www.encodeproject.org/files/ENCFF471IIR/@@download/ENCFF471IIR.fastq.gz Illumina HiSeq 4000 /files/ENCFF821JDA/ released s3://encode-public/2018/02/01/cf737cff-4fe8-4add-bf29-c0705433dfee/ENCFF471IIR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF742EYL bam bam alignments dm6 ENCSR082YVU Control ChIP-seq /fly-donors/ENCDO496CJL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42300/'], '@type': ['Target', 'Item'], 'name': 'sqz-dmelanogaster', 'label': 'sqz', '@id': '/targets/sqz-dmelanogaster/', 'title': 'sqz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'c54ee573-59c1-4976-8646-aa972f50ae0c', 'status': 'released'} dm3 3R 14984715 15003930 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF471IIR/, /files/ENCFF479RCH/ 1034177312 Kevin White, UChicago 690d5d8442eb87b0e988e6d716103067 https://www.encodeproject.org/files/ENCFF742EYL/@@download/ENCFF742EYL.bam released s3://encode-public/2018/02/02/5760a09c-575a-4e1c-a068-6291bee131a5/ENCFF742EYL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF833RXV bigWig bigWig signal of unique reads dm6 ENCSR082YVU Control ChIP-seq /fly-donors/ENCDO496CJL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42300/'], '@type': ['Target', 'Item'], 'name': 'sqz-dmelanogaster', 'label': 'sqz', '@id': '/targets/sqz-dmelanogaster/', 'title': 'sqz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'c54ee573-59c1-4976-8646-aa972f50ae0c', 'status': 'released'} dm3 3R 14984715 15003930 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF742EYL/ 17594527 Kevin White, UChicago c120a12d91ff8cb1a20cf6576becd720 https://www.encodeproject.org/files/ENCFF833RXV/@@download/ENCFF833RXV.bigWig released s3://encode-public/2018/02/02/3e860599-7e80-45f2-8f19-8654e4a79f6e/ENCFF833RXV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF024EIR bigWig bigWig read-depth normalized signal dm6 ENCSR082YVU Control ChIP-seq /fly-donors/ENCDO496CJL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42300/'], '@type': ['Target', 'Item'], 'name': 'sqz-dmelanogaster', 'label': 'sqz', '@id': '/targets/sqz-dmelanogaster/', 'title': 'sqz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'c54ee573-59c1-4976-8646-aa972f50ae0c', 'status': 'released'} dm3 3R 14984715 15003930 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF742EYL/ 17627752 Kevin White, UChicago 39ad27fb566862104438aa67a36e1b33 https://www.encodeproject.org/files/ENCFF024EIR/@@download/ENCFF024EIR.bigWig released s3://encode-public/2018/02/02/f0a59939-4a1b-4b99-b0fd-b1133c750092/ENCFF024EIR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF170NLP fastq fastq reads ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 200133280 Zhiping Weng, UMass d42b2e5b5a13ab8c9cac4e7365ded13d SRA:SRR1067018 https://www.encodeproject.org/files/ENCFF170NLP/@@download/ENCFF170NLP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/7af90fed-ac60-484a-94f6-47dd537da377/ENCFF170NLP.fastq.gz low read depth, low read length ENCFF688QCH fastq fastq reads ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 192866069 Zhiping Weng, UMass 72f2ebff17cce854b1467854931e6a08 SRA:SRR1067009 https://www.encodeproject.org/files/ENCFF688QCH/@@download/ENCFF688QCH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/1c658838-1eb8-44e9-8f95-348db448c5b7/ENCFF688QCH.fastq.gz low read depth, low read length ENCFF834XAC fastq fastq reads ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 198127809 Zhiping Weng, UMass 9d867cee0f9fcf2930a7f11a967a4edc SRA:SRR1067017 https://www.encodeproject.org/files/ENCFF834XAC/@@download/ENCFF834XAC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/dac946f3-d3eb-412a-a46d-d17892a0f0a5/ENCFF834XAC.fastq.gz low read depth, low read length ENCFF252BMX fastq fastq reads ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 186655198 Zhiping Weng, UMass 9e8132bddcd7ed49267a5092500e49dc SRA:SRR1067011 https://www.encodeproject.org/files/ENCFF252BMX/@@download/ENCFF252BMX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/6d03e7de-81a5-42a7-9330-447a23fefcf7/ENCFF252BMX.fastq.gz low read depth, low read length ENCFF209ZRJ bam bam unfiltered alignments hg19 ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF834XAC/, /files/ENCFF688QCH/, /files/ENCFF807MUK/, /files/ENCFF252BMX/, /files/ENCFF170NLP/ 938717696 ENCODE Processing Pipeline 807a38656ab684f4f59fadfa43b48144 https://www.encodeproject.org/files/ENCFF209ZRJ/@@download/ENCFF209ZRJ.bam released s3://encode-public/2016/12/19/ef3066e2-dbce-433e-93be-743737fabb9f/ENCFF209ZRJ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF602UNE bam bam alignments hg19 ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF834XAC/, /files/ENCFF688QCH/, /files/ENCFF807MUK/, /files/ENCFF252BMX/, /files/ENCFF170NLP/ 646567020 ENCODE Processing Pipeline cbbf447ad73701b48f868c613a6b83a3 https://www.encodeproject.org/files/ENCFF602UNE/@@download/ENCFF602UNE.bam released s3://encode-public/2016/12/19/89b9c366-ae46-4e27-91e9-fa63447e5687/ENCFF602UNE.bam ENCODE3 hg19 archived low read depth, low read length ENCFF276MON bam bam unfiltered alignments GRCh38 ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF834XAC/, /files/ENCFF688QCH/, /files/ENCFF643CGH/, /files/ENCFF252BMX/, /files/ENCFF170NLP/ 944426794 ENCODE Processing Pipeline 19385ccde92896a6329c83a95d6ecc88 https://www.encodeproject.org/files/ENCFF276MON/@@download/ENCFF276MON.bam released s3://encode-public/2016/12/19/c64c7b63-f0a1-477e-9cd2-28c944659ef2/ENCFF276MON.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF852VGX bam bam alignments GRCh38 ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF834XAC/, /files/ENCFF688QCH/, /files/ENCFF643CGH/, /files/ENCFF252BMX/, /files/ENCFF170NLP/ 646591461 ENCODE Processing Pipeline 19fc8abdfa05829bebdef8cea3008bfa https://www.encodeproject.org/files/ENCFF852VGX/@@download/ENCFF852VGX.bam released s3://encode-public/2016/12/19/3c4ec161-dfa2-421f-803a-df9d984f03d4/ENCFF852VGX.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF893RGJ tagAlign tagAlign alignments hg19 ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF252BMX/, /files/ENCFF834XAC/, /files/ENCFF688QCH/, /files/ENCFF170NLP/ 129260979 Anshul Kundaje, Stanford 0c663fc0d0fe3b280524b8c09fdce16e https://www.encodeproject.org/files/ENCFF893RGJ/@@download/ENCFF893RGJ.tagAlign.gz archived s3://encode-public/2016/02/11/e99034e9-02a7-4c00-81c0-02970bc397ab/ENCFF893RGJ.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF583WWJ bam bam unfiltered alignments GRCh38 ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF688QCH/, /files/ENCFF252BMX/, /files/ENCFF834XAC/, /files/ENCFF170NLP/, /files/ENCFF110MCL/ 899665061 ENCODE Processing Pipeline 96c45c26aa15f18ad0f2c9663b0284d4 https://www.encodeproject.org/files/ENCFF583WWJ/@@download/ENCFF583WWJ.bam released s3://encode-public/2021/02/16/a70a72e1-51cc-41d4-b2f3-cca6a135c4d8/ENCFF583WWJ.bam ENCODE4 v1.7.0 GRCh38 released low read depth, low read length ENCFF193CFP bam bam alignments GRCh38 ENCSR241FEX Control ChIP-seq /human-donors/ENCDO453STB/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF688QCH/, /files/ENCFF252BMX/, /files/ENCFF834XAC/, /files/ENCFF170NLP/, /files/ENCFF110MCL/ 649387900 ENCODE Processing Pipeline f1328fb4fe3048c34dee141d46018ab2 https://www.encodeproject.org/files/ENCFF193CFP/@@download/ENCFF193CFP.bam released s3://encode-public/2021/02/16/38754aab-cb70-4cce-96ef-dfd5ce288160/ENCFF193CFP.bam ENCODE4 v1.7.0 GRCh38 released low read depth, low read length ENCFF448QTY fastq fastq reads ENCSR962NZG Control ChIP-seq /fly-donors/ENCDO578WNG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35004/'], '@type': ['Target', 'Item'], 'name': 'CG17912-dmelanogaster', 'label': 'CG17912', '@id': '/targets/CG17912-dmelanogaster/', 'title': 'CG17912 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0424b616-b36e-4e7d-a9e1-ccc55ee49e70', 'status': 'released'} dm3 2L 16737437 16757138 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1262875830 Kevin White, UChicago acd9162389ff8a9818d35780578658a1 https://www.encodeproject.org/files/ENCFF448QTY/@@download/ENCFF448QTY.fastq.gz Illumina HiSeq 4000 /files/ENCFF922ZXX/ released s3://encode-public/2018/02/01/f3e49d29-dcb7-4303-b3bf-6d8ad6ae185e/ENCFF448QTY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF306MBX bam bam alignments dm6 ENCSR962NZG Control ChIP-seq /fly-donors/ENCDO578WNG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35004/'], '@type': ['Target', 'Item'], 'name': 'CG17912-dmelanogaster', 'label': 'CG17912', '@id': '/targets/CG17912-dmelanogaster/', 'title': 'CG17912 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0424b616-b36e-4e7d-a9e1-ccc55ee49e70', 'status': 'released'} dm3 2L 16737437 16757138 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF448QTY/, /files/ENCFF479RCH/ 1696974050 Kevin White, UChicago 0b9d26d4806981993564f6b33809dace https://www.encodeproject.org/files/ENCFF306MBX/@@download/ENCFF306MBX.bam released s3://encode-public/2018/02/02/b955225f-ccc1-4ee1-a264-dcd4a4042a2f/ENCFF306MBX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF738WFL bigWig bigWig signal of unique reads dm6 ENCSR962NZG Control ChIP-seq /fly-donors/ENCDO578WNG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35004/'], '@type': ['Target', 'Item'], 'name': 'CG17912-dmelanogaster', 'label': 'CG17912', '@id': '/targets/CG17912-dmelanogaster/', 'title': 'CG17912 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0424b616-b36e-4e7d-a9e1-ccc55ee49e70', 'status': 'released'} dm3 2L 16737437 16757138 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF306MBX/ 17824947 Kevin White, UChicago d0f11eb9eb1330954aaa3b4a94e0fd45 https://www.encodeproject.org/files/ENCFF738WFL/@@download/ENCFF738WFL.bigWig released s3://encode-public/2018/02/02/bdfd96d2-41a5-4fd6-9d4d-9b142131f298/ENCFF738WFL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF003QLX bigWig bigWig read-depth normalized signal dm6 ENCSR962NZG Control ChIP-seq /fly-donors/ENCDO578WNG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35004/'], '@type': ['Target', 'Item'], 'name': 'CG17912-dmelanogaster', 'label': 'CG17912', '@id': '/targets/CG17912-dmelanogaster/', 'title': 'CG17912 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0424b616-b36e-4e7d-a9e1-ccc55ee49e70', 'status': 'released'} dm3 2L 16737437 16757138 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF306MBX/ 17734264 Kevin White, UChicago 563550e9e47e68d4e019e7051781bc04 https://www.encodeproject.org/files/ENCFF003QLX/@@download/ENCFF003QLX.bigWig released s3://encode-public/2018/02/02/4ae698df-087c-4573-bb0d-15c34717b4f4/ENCFF003QLX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF431ILP fastq fastq reads ENCSR071KGD Control ChIP-seq /fly-donors/ENCDO486WPR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40351/'], '@type': ['Target', 'Item'], 'name': 'pzg-dmelanogaster', 'label': 'pzg', '@id': '/targets/pzg-dmelanogaster/', 'title': 'pzg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7abcde78-328f-4b43-82c1-04e3dbdbc0cd', 'status': 'released'} dm3 3L 21272858 21296641 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 812603695 Kevin White, UChicago 0c29e335a64daef03fdaa1be462eb636 https://www.encodeproject.org/files/ENCFF431ILP/@@download/ENCFF431ILP.fastq.gz Illumina HiSeq 4000 /files/ENCFF927XSJ/ released s3://encode-public/2018/02/01/ef4acb68-90cb-4c59-8df6-f07c309da41e/ENCFF431ILP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF845LZP bam bam alignments dm6 ENCSR071KGD Control ChIP-seq /fly-donors/ENCDO486WPR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40351/'], '@type': ['Target', 'Item'], 'name': 'pzg-dmelanogaster', 'label': 'pzg', '@id': '/targets/pzg-dmelanogaster/', 'title': 'pzg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7abcde78-328f-4b43-82c1-04e3dbdbc0cd', 'status': 'released'} dm3 3L 21272858 21296641 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF431ILP/, /files/ENCFF479RCH/ 1075700954 Kevin White, UChicago 90b82c7e878ea6411ac6d775bf101270 https://www.encodeproject.org/files/ENCFF845LZP/@@download/ENCFF845LZP.bam released s3://encode-public/2018/02/02/c85ca76a-85ef-4f37-859e-83182bbf0359/ENCFF845LZP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF728BYL bigWig bigWig signal of unique reads dm6 ENCSR071KGD Control ChIP-seq /fly-donors/ENCDO486WPR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40351/'], '@type': ['Target', 'Item'], 'name': 'pzg-dmelanogaster', 'label': 'pzg', '@id': '/targets/pzg-dmelanogaster/', 'title': 'pzg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7abcde78-328f-4b43-82c1-04e3dbdbc0cd', 'status': 'released'} dm3 3L 21272858 21296641 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF845LZP/ 17593965 Kevin White, UChicago c8f70613b6b46ef4ca223a0b948be49d https://www.encodeproject.org/files/ENCFF728BYL/@@download/ENCFF728BYL.bigWig released s3://encode-public/2018/02/02/48c913af-4be7-44fd-92ab-9955a8334930/ENCFF728BYL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF334NCG bigWig bigWig read-depth normalized signal dm6 ENCSR071KGD Control ChIP-seq /fly-donors/ENCDO486WPR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40351/'], '@type': ['Target', 'Item'], 'name': 'pzg-dmelanogaster', 'label': 'pzg', '@id': '/targets/pzg-dmelanogaster/', 'title': 'pzg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7abcde78-328f-4b43-82c1-04e3dbdbc0cd', 'status': 'released'} dm3 3L 21272858 21296641 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF845LZP/ 17610352 Kevin White, UChicago 05384f35f3b74378446ec4be479b7a75 https://www.encodeproject.org/files/ENCFF334NCG/@@download/ENCFF334NCG.bigWig released s3://encode-public/2018/02/02/fc9923fc-0b8a-482d-87a4-db3ce9840267/ENCFF334NCG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF618ZDI fastq fastq reads ENCSR387ACQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7025/'], '@type': ['Target', 'Item'], 'label': 'NR2F1', 'title': 'NR2F1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '618b2122-2a97-44a8-bd6a-f473c1363dd2', 'schema_version': '14', 'name': 'NR2F1-human', '@id': '/targets/NR2F1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF488CHR/ 2024371177 Michael Snyder, Stanford 69aa1ea708fd7bbe871849a7b4548dbb https://www.encodeproject.org/files/ENCFF618ZDI/@@download/ENCFF618ZDI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/5ab533bd-847d-4491-877a-defc1fb9f1d5/ENCFF618ZDI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF488CHR fastq fastq reads ENCSR387ACQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7025/'], '@type': ['Target', 'Item'], 'label': 'NR2F1', 'title': 'NR2F1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '618b2122-2a97-44a8-bd6a-f473c1363dd2', 'schema_version': '14', 'name': 'NR2F1-human', '@id': '/targets/NR2F1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF618ZDI/ 2337537555 Michael Snyder, Stanford cb1901077f41202025efff30eef8caae https://www.encodeproject.org/files/ENCFF488CHR/@@download/ENCFF488CHR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/2b24a53e-921b-4bad-aaca-635ef99fe128/ENCFF488CHR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF816BCO bam bam unfiltered alignments GRCh38 ENCSR387ACQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7025/'], '@type': ['Target', 'Item'], 'label': 'NR2F1', 'title': 'NR2F1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '618b2122-2a97-44a8-bd6a-f473c1363dd2', 'schema_version': '14', 'name': 'NR2F1-human', '@id': '/targets/NR2F1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF618ZDI/, /files/ENCFF488CHR/ 3944506496 ENCODE Processing Pipeline a25b4569d7f531aeeaa7a8117c659a0b https://www.encodeproject.org/files/ENCFF816BCO/@@download/ENCFF816BCO.bam released s3://encode-public/2020/04/21/1527dd3f-ba3d-400c-8e91-be02effac7a1/ENCFF816BCO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF887MNK bam bam alignments GRCh38 ENCSR387ACQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7025/'], '@type': ['Target', 'Item'], 'label': 'NR2F1', 'title': 'NR2F1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '618b2122-2a97-44a8-bd6a-f473c1363dd2', 'schema_version': '14', 'name': 'NR2F1-human', '@id': '/targets/NR2F1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF618ZDI/, /files/ENCFF488CHR/ 2601069609 ENCODE Processing Pipeline 908659e94ce2c6a5b3d14bddee49880c https://www.encodeproject.org/files/ENCFF887MNK/@@download/ENCFF887MNK.bam released s3://encode-public/2020/04/21/17fe88e2-fd8d-4f96-830b-c592c908ec88/ENCFF887MNK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF388AHN fastq fastq reads ENCSR268FFL Control ChIP-seq /fly-donors/ENCDO193KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38379/'], '@type': ['Target', 'Item'], 'name': 'pfk-dmelanogaster', 'label': 'pfk', '@id': '/targets/pfk-dmelanogaster/', 'title': 'pfk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '934e6a28-b4e4-44e1-946f-de5b83ace3f3', 'status': 'released'} dm3 3L 3152353 3174318 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 887410053 Kevin White, UChicago 022d499c653e741ee18b9f92b1492852 https://www.encodeproject.org/files/ENCFF388AHN/@@download/ENCFF388AHN.fastq.gz Illumina HiSeq 4000 /files/ENCFF559YME/ released s3://encode-public/2018/02/01/68a58b41-d3f0-40e5-8d13-b2dea9ed95ce/ENCFF388AHN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF068HKB bam bam alignments dm6 ENCSR268FFL Control ChIP-seq /fly-donors/ENCDO193KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38379/'], '@type': ['Target', 'Item'], 'name': 'pfk-dmelanogaster', 'label': 'pfk', '@id': '/targets/pfk-dmelanogaster/', 'title': 'pfk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '934e6a28-b4e4-44e1-946f-de5b83ace3f3', 'status': 'released'} dm3 3L 3152353 3174318 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF388AHN/, /files/ENCFF479RCH/ 1183894928 Kevin White, UChicago cddca28aade63bf9cead7362a89c0836 https://www.encodeproject.org/files/ENCFF068HKB/@@download/ENCFF068HKB.bam released s3://encode-public/2018/02/02/6d591ffb-0109-4d54-8c40-bcde01d375dc/ENCFF068HKB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF285BJW bigWig bigWig read-depth normalized signal dm6 ENCSR268FFL Control ChIP-seq /fly-donors/ENCDO193KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38379/'], '@type': ['Target', 'Item'], 'name': 'pfk-dmelanogaster', 'label': 'pfk', '@id': '/targets/pfk-dmelanogaster/', 'title': 'pfk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '934e6a28-b4e4-44e1-946f-de5b83ace3f3', 'status': 'released'} dm3 3L 3152353 3174318 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF068HKB/ 17734290 Kevin White, UChicago fee11834ad5628467256cc2cb38fc477 https://www.encodeproject.org/files/ENCFF285BJW/@@download/ENCFF285BJW.bigWig released s3://encode-public/2018/02/02/bdd930b0-bdb0-442a-bb63-e548c02474ce/ENCFF285BJW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF027KBH bigWig bigWig signal of unique reads dm6 ENCSR268FFL Control ChIP-seq /fly-donors/ENCDO193KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38379/'], '@type': ['Target', 'Item'], 'name': 'pfk-dmelanogaster', 'label': 'pfk', '@id': '/targets/pfk-dmelanogaster/', 'title': 'pfk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '934e6a28-b4e4-44e1-946f-de5b83ace3f3', 'status': 'released'} dm3 3L 3152353 3174318 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF068HKB/ 17680131 Kevin White, UChicago 27064c4e2a13e6d32da327e247acca21 https://www.encodeproject.org/files/ENCFF027KBH/@@download/ENCFF027KBH.bigWig released s3://encode-public/2018/02/02/0ae5796a-2740-424d-8288-73b679183852/ENCFF027KBH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF177XVE fastq fastq reads ENCSR797ZUO Control ChIP-seq /fly-donors/ENCDO461OAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43293/'], '@type': ['Target', 'Item'], 'name': 'bigmax-dmelanogaster', 'label': 'bigmax', '@id': '/targets/bigmax-dmelanogaster/', 'title': 'bigmax (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d23bae6-6075-4938-a7a6-701a64fdd6e9', 'status': 'released'} dm3 3R 23103750 23122306 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 783828545 Kevin White, UChicago 2b255b302da096a2d4105b0d88e78568 https://www.encodeproject.org/files/ENCFF177XVE/@@download/ENCFF177XVE.fastq.gz Illumina HiSeq 4000 /files/ENCFF140VVB/ released s3://encode-public/2018/02/01/4531f0e1-35e4-4ac1-b9eb-2fde65dc618e/ENCFF177XVE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF146WNC bam bam alignments dm6 ENCSR797ZUO Control ChIP-seq /fly-donors/ENCDO461OAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43293/'], '@type': ['Target', 'Item'], 'name': 'bigmax-dmelanogaster', 'label': 'bigmax', '@id': '/targets/bigmax-dmelanogaster/', 'title': 'bigmax (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d23bae6-6075-4938-a7a6-701a64fdd6e9', 'status': 'released'} dm3 3R 23103750 23122306 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF177XVE/, /files/ENCFF479RCH/ 1048822249 Kevin White, UChicago 529e53d0b95dad5945e55a7a376caf38 https://www.encodeproject.org/files/ENCFF146WNC/@@download/ENCFF146WNC.bam released s3://encode-public/2018/02/02/8043f3ce-f852-45ad-927e-9972aca5505e/ENCFF146WNC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF777TEV bigWig bigWig signal of unique reads dm6 ENCSR797ZUO Control ChIP-seq /fly-donors/ENCDO461OAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43293/'], '@type': ['Target', 'Item'], 'name': 'bigmax-dmelanogaster', 'label': 'bigmax', '@id': '/targets/bigmax-dmelanogaster/', 'title': 'bigmax (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d23bae6-6075-4938-a7a6-701a64fdd6e9', 'status': 'released'} dm3 3R 23103750 23122306 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF146WNC/ 17615563 Kevin White, UChicago 6a6859253a54c7f5d7634b4dacfdcdd4 https://www.encodeproject.org/files/ENCFF777TEV/@@download/ENCFF777TEV.bigWig released s3://encode-public/2018/02/02/baba1985-6d76-43ec-80a3-8260e39081bf/ENCFF777TEV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF665CUE bigWig bigWig read-depth normalized signal dm6 ENCSR797ZUO Control ChIP-seq /fly-donors/ENCDO461OAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43293/'], '@type': ['Target', 'Item'], 'name': 'bigmax-dmelanogaster', 'label': 'bigmax', '@id': '/targets/bigmax-dmelanogaster/', 'title': 'bigmax (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d23bae6-6075-4938-a7a6-701a64fdd6e9', 'status': 'released'} dm3 3R 23103750 23122306 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF146WNC/ 17645205 Kevin White, UChicago fe0ed4e78b68853ca2f6869e5838ef54 https://www.encodeproject.org/files/ENCFF665CUE/@@download/ENCFF665CUE.bigWig released s3://encode-public/2018/02/02/072909ae-d363-4ad1-b932-28c37733fcdd/ENCFF665CUE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF880RIS fastq fastq reads ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1532090534 Zhiping Weng, UMass 490cd3687d832cd4e3aec5c9c51444ac SRA:SRR1067499 https://www.encodeproject.org/files/ENCFF880RIS/@@download/ENCFF880RIS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/22/896b3489-ab0b-40c0-9a6b-c11bd7738680/ENCFF880RIS.fastq.gz mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF559SVF bam bam unfiltered alignments hg19 ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF880RIS/, /files/ENCFF807MUK/ 1692752688 ENCODE Processing Pipeline bf371a2f189fb0679634eb1e0f44346a https://www.encodeproject.org/files/ENCFF559SVF/@@download/ENCFF559SVF.bam released s3://encode-public/2016/12/19/7956de6f-6625-40be-997c-715b310d33d5/ENCFF559SVF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF553LPF bam bam unfiltered alignments GRCh38 ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF880RIS/, /files/ENCFF643CGH/ 1696661162 ENCODE Processing Pipeline 86ba04f6f8137cf85fa7c5be95cb6609 https://www.encodeproject.org/files/ENCFF553LPF/@@download/ENCFF553LPF.bam released s3://encode-public/2016/12/19/97ed3961-9164-4c4a-929c-07e83a0d05eb/ENCFF553LPF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF913IBQ bam bam alignments hg19 ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF880RIS/, /files/ENCFF807MUK/ 482068277 ENCODE Processing Pipeline b21041b8b863e56c465f7429d461d3dc https://www.encodeproject.org/files/ENCFF913IBQ/@@download/ENCFF913IBQ.bam released s3://encode-public/2016/12/19/3c39f130-f41c-480a-8079-6ad6a7e9a49e/ENCFF913IBQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF438WTU bam bam alignments GRCh38 ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF880RIS/, /files/ENCFF643CGH/ 481719884 ENCODE Processing Pipeline 4880ae343abb7ab0f9274e2f97a9c947 https://www.encodeproject.org/files/ENCFF438WTU/@@download/ENCFF438WTU.bam released s3://encode-public/2016/12/19/8175cc81-11db-43ef-b5d9-53265e594f0a/ENCFF438WTU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF244ZSU tagAlign tagAlign alignments hg19 ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF880RIS/ 77249495 Anshul Kundaje, Stanford cea45e6210ece91f2613db5520c46fb0 https://www.encodeproject.org/files/ENCFF244ZSU/@@download/ENCFF244ZSU.tagAlign.gz archived s3://encode-public/2016/02/11/2201fe16-1bcc-453b-b24a-47653d6e12ce/ENCFF244ZSU.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF089IRS bam bam unfiltered alignments GRCh38 ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF880RIS/ 1670574907 ENCODE Processing Pipeline 6f62edaf37cbb8efa79259e223015d57 https://www.encodeproject.org/files/ENCFF089IRS/@@download/ENCFF089IRS.bam released s3://encode-public/2020/11/13/48181ef3-95f4-4a93-b138-c1cc55ab338d/ENCFF089IRS.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF501CLS bam bam alignments GRCh38 ENCSR019VTK Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF880RIS/ 516065565 ENCODE Processing Pipeline debf6d7d38e13790b3e5e4367231d92c https://www.encodeproject.org/files/ENCFF501CLS/@@download/ENCFF501CLS.bam released s3://encode-public/2020/11/13/7d6fcc24-dcb0-4623-9856-6ac9c2d411a6/ENCFF501CLS.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF828JDY fastq fastq reads ENCSR174KFQ Control ChIP-seq /fly-donors/ENCDO582FXD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36603/'], '@type': ['Target', 'Item'], 'name': 'CG17385-dmelanogaster', 'label': 'CG17385', '@id': '/targets/CG17385-dmelanogaster/', 'title': 'CG17385 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '75d19fce-b9d0-4fdc-8c65-baa2577c0d7d', 'status': 'released'} dm3 2R 10289150 10310869 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1717945226 Kevin White, UChicago 9925a88cad6b845f61bf9d7de52bbcb2 https://www.encodeproject.org/files/ENCFF828JDY/@@download/ENCFF828JDY.fastq.gz Illumina HiSeq 4000 /files/ENCFF741IXH/ released s3://encode-public/2018/02/01/04019974-1ca4-4203-a04e-5ecf933cca68/ENCFF828JDY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF248HOK bam bam alignments dm6 ENCSR174KFQ Control ChIP-seq /fly-donors/ENCDO582FXD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36603/'], '@type': ['Target', 'Item'], 'name': 'CG17385-dmelanogaster', 'label': 'CG17385', '@id': '/targets/CG17385-dmelanogaster/', 'title': 'CG17385 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '75d19fce-b9d0-4fdc-8c65-baa2577c0d7d', 'status': 'released'} dm3 2R 10289150 10310869 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF828JDY/, /files/ENCFF479RCH/ 2288525078 Kevin White, UChicago 419940098516e3f0ccc391d93b888612 https://www.encodeproject.org/files/ENCFF248HOK/@@download/ENCFF248HOK.bam released s3://encode-public/2018/02/02/9273bfd3-1be3-449c-be5d-a198242924ab/ENCFF248HOK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF187VMB bigWig bigWig signal of unique reads dm6 ENCSR174KFQ Control ChIP-seq /fly-donors/ENCDO582FXD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36603/'], '@type': ['Target', 'Item'], 'name': 'CG17385-dmelanogaster', 'label': 'CG17385', '@id': '/targets/CG17385-dmelanogaster/', 'title': 'CG17385 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '75d19fce-b9d0-4fdc-8c65-baa2577c0d7d', 'status': 'released'} dm3 2R 10289150 10310869 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF248HOK/ 17822057 Kevin White, UChicago 108e0e487241e9eda665e4e4f0b6ed1e https://www.encodeproject.org/files/ENCFF187VMB/@@download/ENCFF187VMB.bigWig released s3://encode-public/2018/02/02/829118e4-4753-4275-9fb0-335efaea6a26/ENCFF187VMB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF449DZK bigWig bigWig read-depth normalized signal dm6 ENCSR174KFQ Control ChIP-seq /fly-donors/ENCDO582FXD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36603/'], '@type': ['Target', 'Item'], 'name': 'CG17385-dmelanogaster', 'label': 'CG17385', '@id': '/targets/CG17385-dmelanogaster/', 'title': 'CG17385 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '75d19fce-b9d0-4fdc-8c65-baa2577c0d7d', 'status': 'released'} dm3 2R 10289150 10310869 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF248HOK/ 17818245 Kevin White, UChicago cae19d45127af6dc344fa6bdbb270228 https://www.encodeproject.org/files/ENCFF449DZK/@@download/ENCFF449DZK.bigWig released s3://encode-public/2018/02/02/dae1a3aa-8815-4a9f-aa46-97ee6c12abfa/ENCFF449DZK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF043VZB fastq fastq reads ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 311994311 Michael Snyder, Stanford 016bf915f1378a7fada7254125f0fe14 https://www.encodeproject.org/files/ENCFF043VZB/@@download/ENCFF043VZB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6d0b5669-2602-43bf-82e3-09c7f7836b3e/ENCFF043VZB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF194HZH fastq fastq reads ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 194802826 Michael Snyder, Stanford 95fe927aef45503083936a9b49eff298 https://www.encodeproject.org/files/ENCFF194HZH/@@download/ENCFF194HZH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ad9078ef-de54-49f8-b389-f35038690bc3/ENCFF194HZH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF791EYR bam bam alignments ce10 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF043VZB/, /files/ENCFF194HZH/, /files/ENCFF987UMF/ 366605980 Kevin White, UChicago fc436ff24950b2566051fd6ed2b37196 https://www.encodeproject.org/files/ENCFF791EYR/@@download/ENCFF791EYR.bam archived s3://encode-public/2016/10/18/c6d446f6-c5f9-4296-985d-e2e921a8845a/ENCFF791EYR.bam missing genetic modification characterization, missing biosample characterization ENCFF411RCJ bam bam alignments ce11 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF043VZB/, /files/ENCFF194HZH/, /files/ENCFF586MOL/ 574755896 Kevin White, UChicago bbac4d09fa835b05160e7ed43a62a88e https://www.encodeproject.org/files/ENCFF411RCJ/@@download/ENCFF411RCJ.bam released s3://encode-public/2016/10/19/8924e8e7-0b49-449b-a81f-58127280cf33/ENCFF411RCJ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF413LCX bigWig bigWig read-depth normalized signal ce10 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF791EYR/ 10046806 Kevin White, UChicago 1d20158c4452a636edb4085110f48d44 https://www.encodeproject.org/files/ENCFF413LCX/@@download/ENCFF413LCX.bigWig archived s3://encode-public/2016/10/20/1b741734-a25e-407a-a2e1-a13ee3248f3d/ENCFF413LCX.bigWig missing genetic modification characterization, missing biosample characterization ENCFF706CJS bigWig bigWig signal of unique reads ce10 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF791EYR/ 10019340 Kevin White, UChicago 1c270a3eb82c1acb9687f90ca5f1dda5 https://www.encodeproject.org/files/ENCFF706CJS/@@download/ENCFF706CJS.bigWig archived s3://encode-public/2016/10/20/651ec10a-0567-4575-bf52-9013cea6f451/ENCFF706CJS.bigWig missing genetic modification characterization, missing biosample characterization ENCFF440OXK bigWig bigWig read-depth normalized signal ce11 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF411RCJ/ 9992758 Kevin White, UChicago 4fd4a22a78b850de43c38eb36b2e3db7 https://www.encodeproject.org/files/ENCFF440OXK/@@download/ENCFF440OXK.bigWig released s3://encode-public/2016/10/21/c0d4b106-2b0b-426d-b0c3-29f1dc0f073e/ENCFF440OXK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF220ICX bigWig bigWig signal of unique reads ce11 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF411RCJ/ 10040406 Kevin White, UChicago 67f788fcc51c2840b653faec57a66cd4 https://www.encodeproject.org/files/ENCFF220ICX/@@download/ENCFF220ICX.bigWig released s3://encode-public/2016/10/21/8d18f075-32bb-4096-b959-4a844c8785b5/ENCFF220ICX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF083IUK bam bam alignments ce10 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF043VZB/, /files/ENCFF194HZH/, /files/ENCFF987UMF/ 574315788 Kevin White, UChicago 70737c70465ef32f07c05b6fb1f25303 https://www.encodeproject.org/files/ENCFF083IUK/@@download/ENCFF083IUK.bam released s3://encode-public/2017/11/13/a8d8b15c-1dfe-4954-abed-9e54dca63979/ENCFF083IUK.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF384ALP bigWig bigWig signal of unique reads ce10 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF083IUK/ 10043565 Kevin White, UChicago ab6761281c006be7654ca0955dd8d165 https://www.encodeproject.org/files/ENCFF384ALP/@@download/ENCFF384ALP.bigWig released s3://encode-public/2017/11/13/4c90595b-c3d1-4140-815e-291d975afc4e/ENCFF384ALP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF634BIB bigWig bigWig read-depth normalized signal ce10 ENCSR149RDA Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF083IUK/ 9994164 Kevin White, UChicago bd766a8f8ac7509aaf97317e4cf7713f https://www.encodeproject.org/files/ENCFF634BIB/@@download/ENCFF634BIB.bigWig released s3://encode-public/2017/11/13/4f6116c0-471d-4e84-8b9d-8b98b9ed4dc3/ENCFF634BIB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF481ZTW fastq fastq reads ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 138206741 Michael Snyder, Stanford 253e756d2413062c683cfd1080142e0f https://www.encodeproject.org/files/ENCFF481ZTW/@@download/ENCFF481ZTW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e064c86d-d91f-4ebd-ad04-63beaeba4360/ENCFF481ZTW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF662LJP fastq fastq reads ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 119588971 Michael Snyder, Stanford 2f1b4960ca8368882d941f93124512c1 https://www.encodeproject.org/files/ENCFF662LJP/@@download/ENCFF662LJP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1bc78ffb-4758-420e-8ddf-6ae987b3b9bf/ENCFF662LJP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF355KPT bam bam alignments ce10 ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF662LJP/, /files/ENCFF481ZTW/, /files/ENCFF987UMF/ 320871046 Kevin White, UChicago d10b236aa1dd6ad683cc1e32bea9deb1 https://www.encodeproject.org/files/ENCFF355KPT/@@download/ENCFF355KPT.bam released s3://encode-public/2016/10/18/00f080ce-8ddf-41f8-a451-e6e98cf0c7a0/ENCFF355KPT.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF999DWC bam bam alignments ce11 ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF662LJP/, /files/ENCFF481ZTW/, /files/ENCFF586MOL/ 321200300 Kevin White, UChicago bd16278411a9117cce5b222e207d853d https://www.encodeproject.org/files/ENCFF999DWC/@@download/ENCFF999DWC.bam released s3://encode-public/2016/10/18/69d2e22e-1c43-4087-9e9b-6ce618c905d3/ENCFF999DWC.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF500PYV bigWig bigWig read-depth normalized signal ce10 ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF355KPT/ 10002886 Kevin White, UChicago 916f9f67648ca40e6e504ea15e2e312b https://www.encodeproject.org/files/ENCFF500PYV/@@download/ENCFF500PYV.bigWig released s3://encode-public/2016/10/20/b727f817-e03d-410c-8929-49ac0c57d610/ENCFF500PYV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF908VSD bigWig bigWig signal of unique reads ce10 ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF355KPT/ 10030605 Kevin White, UChicago f70d66c84f52d4ba1dbcbd391f4a0cd2 https://www.encodeproject.org/files/ENCFF908VSD/@@download/ENCFF908VSD.bigWig released s3://encode-public/2016/10/20/de0729ee-1179-44a9-8481-f0a3e7985135/ENCFF908VSD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF704USW bigWig bigWig read-depth normalized signal ce11 ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF999DWC/ 10003780 Kevin White, UChicago 3789ffa764be1eb4095bada0302acc93 https://www.encodeproject.org/files/ENCFF704USW/@@download/ENCFF704USW.bigWig released s3://encode-public/2016/10/20/181219f1-4f35-4839-9dee-e02a24dfffa7/ENCFF704USW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF640KOR bigWig bigWig signal of unique reads ce11 ENCSR452BKA Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF999DWC/ 10026844 Kevin White, UChicago 02e7c6023f123db8e52309abf615d728 https://www.encodeproject.org/files/ENCFF640KOR/@@download/ENCFF640KOR.bigWig released s3://encode-public/2016/10/20/5b800dcf-0fe6-48cd-be96-06bcc42fdd6e/ENCFF640KOR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF872VVD fastq fastq reads ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 139974396 Michael Snyder, Stanford c5b2ad9386e8e5bb1fc9464e3c3b369a https://www.encodeproject.org/files/ENCFF872VVD/@@download/ENCFF872VVD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/37ffe15a-376f-4869-9161-ae214800667e/ENCFF872VVD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF871NDY fastq fastq reads ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 134171805 Michael Snyder, Stanford 74f7869c3b0ce1368c580de1b1ecbbc0 https://www.encodeproject.org/files/ENCFF871NDY/@@download/ENCFF871NDY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/50e70187-480b-4745-9278-62ed6fb3dc28/ENCFF871NDY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF887UNH bam bam alignments ce10 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF872VVD/, /files/ENCFF871NDY/, /files/ENCFF987UMF/ 184455998 Kevin White, UChicago a84b740b8437d665291c66aa445729b3 https://www.encodeproject.org/files/ENCFF887UNH/@@download/ENCFF887UNH.bam archived s3://encode-public/2016/10/18/9d65ea5a-ee09-48b1-af0b-b02573387146/ENCFF887UNH.bam missing genetic modification characterization, missing biosample characterization ENCFF924GAN bam bam alignments ce11 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF872VVD/, /files/ENCFF871NDY/, /files/ENCFF586MOL/ 361671091 Kevin White, UChicago f934f758ad18b93818d18e92718cd837 https://www.encodeproject.org/files/ENCFF924GAN/@@download/ENCFF924GAN.bam released s3://encode-public/2016/10/19/4362eded-8b1f-400d-a136-a3864fa7014a/ENCFF924GAN.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF652GJN bigWig bigWig signal of unique reads ce10 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF887UNH/ 10002376 Kevin White, UChicago 87cc4ae902f69bebc388a1fed6ffbcf9 https://www.encodeproject.org/files/ENCFF652GJN/@@download/ENCFF652GJN.bigWig archived s3://encode-public/2016/10/20/ecc23a6d-5324-441b-8172-a1402de952d6/ENCFF652GJN.bigWig missing genetic modification characterization, missing biosample characterization ENCFF456HLH bigWig bigWig read-depth normalized signal ce10 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF887UNH/ 9999280 Kevin White, UChicago 260a33cfa10463644083b0b7d4e04484 https://www.encodeproject.org/files/ENCFF456HLH/@@download/ENCFF456HLH.bigWig archived s3://encode-public/2016/10/20/f0788178-4f4e-463e-b43a-7970d1b4de3e/ENCFF456HLH.bigWig missing genetic modification characterization, missing biosample characterization ENCFF545GUL bigWig bigWig signal of unique reads ce11 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF924GAN/ 10025471 Kevin White, UChicago 2d97693c6f78d64987eff5389a93ba15 https://www.encodeproject.org/files/ENCFF545GUL/@@download/ENCFF545GUL.bigWig released s3://encode-public/2016/10/21/7f433b42-97b4-4094-bb39-6ac6b3b46a24/ENCFF545GUL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF712RQH bigWig bigWig read-depth normalized signal ce11 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF924GAN/ 9987025 Kevin White, UChicago 1db95772fee3a272cbff49d130c8e591 https://www.encodeproject.org/files/ENCFF712RQH/@@download/ENCFF712RQH.bigWig released s3://encode-public/2016/10/21/cf72f87c-bdb3-4559-9ccb-e6688510d52f/ENCFF712RQH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF981TZT bam bam alignments ce10 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF872VVD/, /files/ENCFF871NDY/, /files/ENCFF987UMF/ 361243467 Kevin White, UChicago 62c03f4c047e7399304e6516bbc05a35 https://www.encodeproject.org/files/ENCFF981TZT/@@download/ENCFF981TZT.bam released s3://encode-public/2017/11/13/2d683147-49c9-4f4f-95e5-7962f62f823f/ENCFF981TZT.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF401ZNI bigWig bigWig read-depth normalized signal ce10 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF981TZT/ 9997938 Kevin White, UChicago 859b7c52344fcb45dc09cc3900d576fa https://www.encodeproject.org/files/ENCFF401ZNI/@@download/ENCFF401ZNI.bigWig released s3://encode-public/2017/11/13/32eab207-1220-49f8-a8a7-866a15f3b71f/ENCFF401ZNI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF065KTS bigWig bigWig signal of unique reads ce10 ENCSR112GYX Control ChIP-seq /worm-donors/ENCDO692APA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187105/'], '@type': ['Target', 'Item'], 'name': 'pax-1-celegans', 'label': 'pax-1', '@id': '/targets/pax-1-celegans/', 'title': 'pax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a795cd5a-a599-4676-aee0-d80a81c61933', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF981TZT/ 10022876 Kevin White, UChicago 5e15cf25031ba536c22e26804754dd4c https://www.encodeproject.org/files/ENCFF065KTS/@@download/ENCFF065KTS.bigWig released s3://encode-public/2017/11/13/880ac4fd-f8be-473c-a1f8-8c8f72a6f4ec/ENCFF065KTS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF347FLR fastq fastq reads ENCSR191UXN Control ChIP-seq /fly-donors/ENCDO317GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31523/'], '@type': ['Target', 'Item'], 'name': 'CG12236-dmelanogaster', 'label': 'CG12236', '@id': '/targets/CG12236-dmelanogaster/', 'title': 'CG12236 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a28ed61c-9215-415d-bb28-c230bb9f494a', 'status': 'released'} dm3 X 5800973 5820440 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 904672786 Kevin White, UChicago 2fbd251a5f9f9c1bbd6130e32a592d5e https://www.encodeproject.org/files/ENCFF347FLR/@@download/ENCFF347FLR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/40c3ac66-f328-4fce-b718-84de0746dcad/ENCFF347FLR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF925VBA bam bam alignments dm3 ENCSR191UXN Control ChIP-seq /fly-donors/ENCDO317GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31523/'], '@type': ['Target', 'Item'], 'name': 'CG12236-dmelanogaster', 'label': 'CG12236', '@id': '/targets/CG12236-dmelanogaster/', 'title': 'CG12236 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a28ed61c-9215-415d-bb28-c230bb9f494a', 'status': 'released'} dm3 X 5800973 5820440 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF347FLR/ 1313380293 Kevin White, UChicago af41652162045cb27b3ebdcab4619c35 https://www.encodeproject.org/files/ENCFF925VBA/@@download/ENCFF925VBA.bam released s3://encode-public/2015/08/03/03a15a62-be44-476c-ae06-c2c681603578/ENCFF925VBA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF763XKY bigWig bigWig read-depth normalized signal dm3 ENCSR191UXN Control ChIP-seq /fly-donors/ENCDO317GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31523/'], '@type': ['Target', 'Item'], 'name': 'CG12236-dmelanogaster', 'label': 'CG12236', '@id': '/targets/CG12236-dmelanogaster/', 'title': 'CG12236 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a28ed61c-9215-415d-bb28-c230bb9f494a', 'status': 'released'} dm3 X 5800973 5820440 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF925VBA/ 15457457 Kevin White, UChicago 0c8638848737518200b9c3c7fdabcc61 https://www.encodeproject.org/files/ENCFF763XKY/@@download/ENCFF763XKY.bigWig released s3://encode-public/2015/10/05/80b83483-dcd3-4724-94be-fdf880c5fe61/ENCFF763XKY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF663SJN bigWig bigWig signal of unique reads dm3 ENCSR191UXN Control ChIP-seq /fly-donors/ENCDO317GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31523/'], '@type': ['Target', 'Item'], 'name': 'CG12236-dmelanogaster', 'label': 'CG12236', '@id': '/targets/CG12236-dmelanogaster/', 'title': 'CG12236 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a28ed61c-9215-415d-bb28-c230bb9f494a', 'status': 'released'} dm3 X 5800973 5820440 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF925VBA/ 15427123 Kevin White, UChicago 49e774ecb45108cbb41cb48fc81e9f8f https://www.encodeproject.org/files/ENCFF663SJN/@@download/ENCFF663SJN.bigWig released s3://encode-public/2015/10/05/5ad9b312-e564-4e55-a05f-cabea2ab270d/ENCFF663SJN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF953FDO bam bam alignments dm6 ENCSR191UXN Control ChIP-seq /fly-donors/ENCDO317GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31523/'], '@type': ['Target', 'Item'], 'name': 'CG12236-dmelanogaster', 'label': 'CG12236', '@id': '/targets/CG12236-dmelanogaster/', 'title': 'CG12236 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a28ed61c-9215-415d-bb28-c230bb9f494a', 'status': 'released'} dm3 X 5800973 5820440 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF347FLR/ 1307445191 Kevin White, UChicago 1460be5de246dfee47eba136e84bd761 https://www.encodeproject.org/files/ENCFF953FDO/@@download/ENCFF953FDO.bam released s3://encode-public/2016/04/20/8d5fb1aa-413a-4a08-8259-2cb8038f773c/ENCFF953FDO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF322EQI bigWig bigWig read-depth normalized signal dm6 ENCSR191UXN Control ChIP-seq /fly-donors/ENCDO317GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31523/'], '@type': ['Target', 'Item'], 'name': 'CG12236-dmelanogaster', 'label': 'CG12236', '@id': '/targets/CG12236-dmelanogaster/', 'title': 'CG12236 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a28ed61c-9215-415d-bb28-c230bb9f494a', 'status': 'released'} dm3 X 5800973 5820440 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF953FDO/ 17541800 Kevin White, UChicago 003fdd460ef4f06b6e9d1c261dcf6576 https://www.encodeproject.org/files/ENCFF322EQI/@@download/ENCFF322EQI.bigWig released s3://encode-public/2016/06/20/4a68b09d-e98d-439c-900c-57ab54e51a8a/ENCFF322EQI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF541KYN bigWig bigWig signal of unique reads dm6 ENCSR191UXN Control ChIP-seq /fly-donors/ENCDO317GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31523/'], '@type': ['Target', 'Item'], 'name': 'CG12236-dmelanogaster', 'label': 'CG12236', '@id': '/targets/CG12236-dmelanogaster/', 'title': 'CG12236 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a28ed61c-9215-415d-bb28-c230bb9f494a', 'status': 'released'} dm3 X 5800973 5820440 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF953FDO/ 17497427 Kevin White, UChicago a206eda1f9031ad9acb031f30c7bab35 https://www.encodeproject.org/files/ENCFF541KYN/@@download/ENCFF541KYN.bigWig released s3://encode-public/2016/06/20/1c348d02-e743-47d1-b048-299150888109/ENCFF541KYN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF964VSW fastq fastq reads ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 117005083 Michael Snyder, Stanford 167fb32a6c44418eb36e3c2fde234f6c https://www.encodeproject.org/files/ENCFF964VSW/@@download/ENCFF964VSW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d1e79354-1d12-4da8-9d2a-cda6c2845b5b/ENCFF964VSW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF934AVB fastq fastq reads ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 3 3_1 32 single-ended 162333527 Michael Snyder, Stanford ab1d3333f43b69d5f3e324fb2238e234 https://www.encodeproject.org/files/ENCFF934AVB/@@download/ENCFF934AVB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/01/14/bec542fc-9b84-4ae6-9136-57947bd0b4ae/ENCFF934AVB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF967YFG bam bam alignments ce10 ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 32 /files/ENCFF964VSW/, /files/ENCFF934AVB/, /files/ENCFF987UMF/ 366038853 Kevin White, UChicago 61813f3a0372831cd5f155e43082e312 https://www.encodeproject.org/files/ENCFF967YFG/@@download/ENCFF967YFG.bam released s3://encode-public/2016/10/18/3d482463-9b14-4980-935d-e99d0434dea9/ENCFF967YFG.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF673MRO bam bam alignments ce11 ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 32 /files/ENCFF964VSW/, /files/ENCFF934AVB/, /files/ENCFF586MOL/ 366445112 Kevin White, UChicago 591f08d637d34676250a0064fc717904 https://www.encodeproject.org/files/ENCFF673MRO/@@download/ENCFF673MRO.bam released s3://encode-public/2016/10/18/a56fae1f-1d4a-45a6-85c2-edc018a11292/ENCFF673MRO.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF905GFA bigWig bigWig read-depth normalized signal ce10 ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF967YFG/ 9972364 Kevin White, UChicago bf8c645ddc2cd96817a96c15d45782f3 https://www.encodeproject.org/files/ENCFF905GFA/@@download/ENCFF905GFA.bigWig released s3://encode-public/2016/10/20/2f25e38e-3ebc-4eb0-893e-0556e00a94a4/ENCFF905GFA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF263TVU bigWig bigWig signal of unique reads ce10 ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF967YFG/ 10035125 Kevin White, UChicago cf81a5857e554fc587ff36f01aee1ca8 https://www.encodeproject.org/files/ENCFF263TVU/@@download/ENCFF263TVU.bigWig released s3://encode-public/2016/10/20/d3b47dc2-da29-424b-87c5-00a68c8191dd/ENCFF263TVU.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF721HAZ bigWig bigWig signal of unique reads ce11 ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF673MRO/ 10033255 Kevin White, UChicago 61f41c3a00c9000a7ad4b41b7000d595 https://www.encodeproject.org/files/ENCFF721HAZ/@@download/ENCFF721HAZ.bigWig released s3://encode-public/2016/10/21/47c6d974-f583-4a3a-a6c5-74f18cf6c8f3/ENCFF721HAZ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF745NOE bigWig bigWig read-depth normalized signal ce11 ENCSR463EQY Control ChIP-seq /worm-donors/ENCDO109QCF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF673MRO/ 9969972 Kevin White, UChicago aed89ad2fec8c79bbe7a7d174fdda8f2 https://www.encodeproject.org/files/ENCFF745NOE/@@download/ENCFF745NOE.bigWig released s3://encode-public/2016/10/21/ca7e16fd-9904-46a4-a677-efaf7c7930d8/ENCFF745NOE.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF084SQE fastq fastq reads ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 81627137 Michael Snyder, Stanford 35828ebf871d48b894b5a561663d2ffc https://www.encodeproject.org/files/ENCFF084SQE/@@download/ENCFF084SQE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d4d5da35-2f7a-4686-8a09-9ece1cc9c17e/ENCFF084SQE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF445NPW fastq fastq reads ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 119049640 Michael Snyder, Stanford 567dcf303faeadb5a26ffcd27cd3f702 https://www.encodeproject.org/files/ENCFF445NPW/@@download/ENCFF445NPW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8bb235f3-4073-4451-9a30-a627270ed239/ENCFF445NPW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF633PMW bam bam alignments ce10 ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF084SQE/, /files/ENCFF445NPW/, /files/ENCFF987UMF/ 241448627 Kevin White, UChicago 414da4d2a8acb1e3972a6e98f99cbad5 https://www.encodeproject.org/files/ENCFF633PMW/@@download/ENCFF633PMW.bam released s3://encode-public/2016/10/18/175b6e70-6a62-4fc1-bb13-d1956d576db2/ENCFF633PMW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF655ZWH bam bam alignments ce11 ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF084SQE/, /files/ENCFF445NPW/, /files/ENCFF586MOL/ 241645718 Kevin White, UChicago 257d62b7375f5ce40ec01e8391bbb1ad https://www.encodeproject.org/files/ENCFF655ZWH/@@download/ENCFF655ZWH.bam released s3://encode-public/2016/10/18/b7b66779-2d0e-4bd0-ae7b-b0494fa28c05/ENCFF655ZWH.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF925RWX bigWig bigWig signal of unique reads ce10 ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF633PMW/ 9975447 Kevin White, UChicago 6b84d6b26555b7a213f7814903281e64 https://www.encodeproject.org/files/ENCFF925RWX/@@download/ENCFF925RWX.bigWig released s3://encode-public/2016/10/20/e7b187a5-a5ac-4640-96be-7b4265727349/ENCFF925RWX.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF926ONR bigWig bigWig read-depth normalized signal ce10 ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF633PMW/ 9977093 Kevin White, UChicago f40b5cd0b0450f1f4ab06d64b08b1562 https://www.encodeproject.org/files/ENCFF926ONR/@@download/ENCFF926ONR.bigWig released s3://encode-public/2016/10/20/5b11b624-6ee4-4750-b747-f612d8a9e84e/ENCFF926ONR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF343UGP bigWig bigWig read-depth normalized signal ce11 ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF655ZWH/ 9981011 Kevin White, UChicago 85e271b6fde005f8a9683911c13c93b2 https://www.encodeproject.org/files/ENCFF343UGP/@@download/ENCFF343UGP.bigWig released s3://encode-public/2016/10/20/c21c85d1-8acd-4bbe-bb3a-c6d5f4b1417d/ENCFF343UGP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF884ATH bigWig bigWig signal of unique reads ce11 ENCSR569UBF Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF655ZWH/ 9983539 Kevin White, UChicago bc30a6d59009d892b4c7fd339c7ec026 https://www.encodeproject.org/files/ENCFF884ATH/@@download/ENCFF884ATH.bigWig released s3://encode-public/2016/10/20/4256f9ea-554a-44b1-bda3-09e742045009/ENCFF884ATH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF233DST fastq fastq reads ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 158883688 Michael Snyder, Stanford e2a98f6450458fc8c5c8f5019c469864 https://www.encodeproject.org/files/ENCFF233DST/@@download/ENCFF233DST.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/31b3021f-f0f3-4e5f-86a9-649755e0313a/ENCFF233DST.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF879JHT fastq fastq reads ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 178108806 Michael Snyder, Stanford 5964443e373bbe22d684f5d658b666b0 https://www.encodeproject.org/files/ENCFF879JHT/@@download/ENCFF879JHT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/8b337e91-21fa-43f5-9990-910eea87e78f/ENCFF879JHT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF491NFS bam bam alignments ce10 ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF233DST/, /files/ENCFF879JHT/, /files/ENCFF987UMF/ 452754242 Kevin White, UChicago 9b86678b1c6099be61bf13080a6a8e07 https://www.encodeproject.org/files/ENCFF491NFS/@@download/ENCFF491NFS.bam released s3://encode-public/2016/10/18/20abe0f5-0f88-4e06-8e04-7edcb7893e05/ENCFF491NFS.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF378ACG bam bam alignments ce11 ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF233DST/, /files/ENCFF879JHT/, /files/ENCFF586MOL/ 453291698 Kevin White, UChicago 7cd3d376d0c5001b74e9249edad2d4a6 https://www.encodeproject.org/files/ENCFF378ACG/@@download/ENCFF378ACG.bam released s3://encode-public/2016/10/18/219ca0cd-38b0-41fd-b5e6-67689263c0ed/ENCFF378ACG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF136HRN bigWig bigWig signal of unique reads ce10 ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF491NFS/ 10065704 Kevin White, UChicago ecf3596f13f5929bc0dba41276b8f3c5 https://www.encodeproject.org/files/ENCFF136HRN/@@download/ENCFF136HRN.bigWig released s3://encode-public/2016/10/20/ae3fb3f0-a7c9-4400-9175-5b8951582520/ENCFF136HRN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF875ECU bigWig bigWig read-depth normalized signal ce10 ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF491NFS/ 10093749 Kevin White, UChicago 7dfd4ae55b5196b38a0cfc735a8e2f7d https://www.encodeproject.org/files/ENCFF875ECU/@@download/ENCFF875ECU.bigWig released s3://encode-public/2016/10/20/dcafc661-ac4d-4ca2-8e43-046d5a1dbf22/ENCFF875ECU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF250XXA bigWig bigWig read-depth normalized signal ce11 ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF378ACG/ 10088309 Kevin White, UChicago 4295125fef2f0a7c66440c689c2ebe62 https://www.encodeproject.org/files/ENCFF250XXA/@@download/ENCFF250XXA.bigWig released s3://encode-public/2016/10/20/4328b836-0de7-42e1-9a84-231de34d1d12/ENCFF250XXA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF512DFZ bigWig bigWig signal of unique reads ce11 ENCSR788SPS Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF378ACG/ 10061570 Kevin White, UChicago a6a0399110ec49a0304656544fd71600 https://www.encodeproject.org/files/ENCFF512DFZ/@@download/ENCFF512DFZ.bigWig released s3://encode-public/2016/10/20/82bdf3b7-de79-4fa0-8412-1f20ae961ee3/ENCFF512DFZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF053SLT bam bam unfiltered alignments hg19 ENCSR129NAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF774EJH/ 1855306178 ENCODE Processing Pipeline 3338e505832294cee02695d437ac3517 https://www.encodeproject.org/files/ENCFF053SLT/@@download/ENCFF053SLT.bam released s3://encode-public/2018/02/20/e41fb2a1-b09e-4882-ba62-ccde1feaa53b/ENCFF053SLT.bam ENCODE3 hg19 archived ENCFF774EJH fastq fastq reads ENCSR129NAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 single-ended 1720455051 Richard Myers, HAIB 01d8fda4257403fd23cccef6a3882840 SRA:SRR5331292 https://www.encodeproject.org/files/ENCFF774EJH/@@download/ENCFF774EJH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/31/2fca38f8-92dd-4362-82e5-da201c1d3e9c/ENCFF774EJH.fastq.gz ENCFF454QBD bam bam alignments hg19 ENCSR129NAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF774EJH/ 1426102234 ENCODE Processing Pipeline 6604b51b3257d2dca6c5a0ce8532117f https://www.encodeproject.org/files/ENCFF454QBD/@@download/ENCFF454QBD.bam released s3://encode-public/2015/11/17/cd0cf155-ab85-49be-9b02-2bd49a08a35d/ENCFF454QBD.bam ENCODE3 hg19 archived ENCFF611SZR bam bam unfiltered alignments GRCh38 ENCSR129NAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF774EJH/ 1861808706 ENCODE Processing Pipeline 3b1a43c3e31554d0fb3dfd27c36a3668 https://www.encodeproject.org/files/ENCFF611SZR/@@download/ENCFF611SZR.bam released s3://encode-public/2016/05/06/50c84f61-08d6-4319-aca1-1c41380563fa/ENCFF611SZR.bam ENCODE3 GRCh38 archived ENCFF213VVQ bam bam alignments GRCh38 ENCSR129NAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF774EJH/ 1425796075 ENCODE Processing Pipeline f6ee0369cae743bb0a34cfa541d48854 https://www.encodeproject.org/files/ENCFF213VVQ/@@download/ENCFF213VVQ.bam released s3://encode-public/2016/05/06/febcb5bd-00f8-4e87-a7f5-da3e1fd59d52/ENCFF213VVQ.bam ENCODE3 GRCh38 archived ENCFF980TNJ bam bam alignments GRCh38 ENCSR129NAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF774EJH/ 1495501736 ENCODE Processing Pipeline 9b06ec8df5f8c1d6363976a6fc190684 https://www.encodeproject.org/files/ENCFF980TNJ/@@download/ENCFF980TNJ.bam released s3://encode-public/2020/06/06/f68e73c7-7e49-4f9c-bd6c-6574f0063ddb/ENCFF980TNJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF717KZM bam bam unfiltered alignments GRCh38 ENCSR129NAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF774EJH/ 1846684503 ENCODE Processing Pipeline 44ea1d58deaa617010b02856f08c7eb3 https://www.encodeproject.org/files/ENCFF717KZM/@@download/ENCFF717KZM.bam released s3://encode-public/2020/06/06/24046ac8-0f12-4e3a-aa6c-d74cf58d5ab8/ENCFF717KZM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF870IFM tagAlign tagAlign alignments hg19 ENCSR644CBZ Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/ENCFF526EBG/, /files/ENCFF955GRV/, /files/ENCFF892GTI/ 203252909 Anshul Kundaje, Stanford 74959def7a7cdb0caaa69e676eb3a4ee https://www.encodeproject.org/files/ENCFF870IFM/@@download/ENCFF870IFM.tagAlign.gz archived s3://encode-public/2016/03/30/e846d686-b293-4647-9acb-df88fbcac4e0/ENCFF870IFM.tagAlign.gz Lab custom hg19 archived low read length ENCFF737YRO bam bam redacted alignments GRCh38 ENCSR644CBZ Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF526EBG/, /files/ENCFF643CGH/, /files/ENCFF955GRV/, /files/ENCFF892GTI/ 429838274 ENCODE Processing Pipeline bef3495cfb27c7ce92c295407f3d5e5d https://www.encodeproject.org/files/ENCFF737YRO/@@download/ENCFF737YRO.bam released s3://encode-public/2018/01/24/42d2cd8b-1f8b-42f2-b561-a61721388454/ENCFF737YRO.bam ENCODE3 GRCh38 archived low read length ENCFF670CMC bam bam redacted unfiltered alignments GRCh38 ENCSR644CBZ Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF526EBG/, /files/ENCFF643CGH/, /files/ENCFF955GRV/, /files/ENCFF892GTI/ 614294668 ENCODE Processing Pipeline a7e03a35b3b15e293ec1441bc403184c https://www.encodeproject.org/files/ENCFF670CMC/@@download/ENCFF670CMC.bam released s3://encode-public/2018/01/24/854090fd-f5a4-427d-9781-66b48e9cb5af/ENCFF670CMC.bam ENCODE3 GRCh38 archived low read length ENCFF302LEI bam bam redacted alignments hg19 ENCSR644CBZ Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF526EBG/, /files/ENCFF807MUK/, /files/ENCFF955GRV/, /files/ENCFF892GTI/ 429820010 ENCODE Processing Pipeline f8e7c16d7388819f7b2803a53bf09c47 https://www.encodeproject.org/files/ENCFF302LEI/@@download/ENCFF302LEI.bam released s3://encode-public/2018/01/24/8e6ad860-5bfe-4901-b543-dc8c08b8228c/ENCFF302LEI.bam ENCODE3 hg19 archived low read length ENCFF840ZKH bam bam redacted unfiltered alignments hg19 ENCSR644CBZ Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF526EBG/, /files/ENCFF807MUK/, /files/ENCFF955GRV/, /files/ENCFF892GTI/ 607392995 ENCODE Processing Pipeline 50adaad0f5988e76cfa4360dcc2470f8 https://www.encodeproject.org/files/ENCFF840ZKH/@@download/ENCFF840ZKH.bam released s3://encode-public/2018/01/24/397a227e-7a84-4be0-b2c0-5a7ce0e65602/ENCFF840ZKH.bam ENCODE3 hg19 archived low read length ENCFF671UZW bam bam redacted alignments GRCh38 ENCSR644CBZ Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF526EBG/, /files/ENCFF110MCL/, /files/ENCFF955GRV/, /files/ENCFF892GTI/ 1332026705 ENCODE Processing Pipeline eb24e8d7ca2062e468acfcc06ee20aac https://www.encodeproject.org/files/ENCFF671UZW/@@download/ENCFF671UZW.bam released s3://encode-public/2021/01/27/020c68d6-5652-4f68-8e91-caea4b28f551/ENCFF671UZW.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF740VPJ fastq fastq reads ENCSR974LIK Control ChIP-seq /human-donors/ENCDO017FQX/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1353137921 Zhiping Weng, UMass dc78f52bb286fb00b6bb4ec17b63143f SRA:SRR1068373 https://www.encodeproject.org/files/ENCFF740VPJ/@@download/ENCFF740VPJ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/c9dcd774-86a8-4b84-a92f-13084841515b/ENCFF740VPJ.fastq.gz low read length ENCFF461UDM bam bam unfiltered alignments hg19 ENCSR974LIK Control ChIP-seq /human-donors/ENCDO017FQX/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF740VPJ/, /files/ENCFF807MUK/ 1588132154 ENCODE Processing Pipeline 6ca140d4dfce84b055f6bdc19aa19557 https://www.encodeproject.org/files/ENCFF461UDM/@@download/ENCFF461UDM.bam released s3://encode-public/2016/12/19/d19a07cc-e25d-477f-943c-67434d3ef231/ENCFF461UDM.bam ENCODE3 hg19 archived low read length ENCFF585PWF bam bam alignments hg19 ENCSR974LIK Control ChIP-seq /human-donors/ENCDO017FQX/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF740VPJ/, /files/ENCFF807MUK/ 1161667697 ENCODE Processing Pipeline f3c282111d67a504747b0289637c1611 https://www.encodeproject.org/files/ENCFF585PWF/@@download/ENCFF585PWF.bam released s3://encode-public/2016/12/19/db40340f-a4d0-4f71-a5c0-9d7103865b5b/ENCFF585PWF.bam ENCODE3 hg19 archived low read length ENCFF793OMH bam bam unfiltered alignments GRCh38 ENCSR974LIK Control ChIP-seq /human-donors/ENCDO017FQX/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF740VPJ/, /files/ENCFF643CGH/ 1600146228 ENCODE Processing Pipeline 36c6f29edc7ebbcb441ca8ff0a5003a3 https://www.encodeproject.org/files/ENCFF793OMH/@@download/ENCFF793OMH.bam released s3://encode-public/2016/12/19/f234ee14-d9be-4cc3-957e-ecf86b518b6a/ENCFF793OMH.bam ENCODE3 GRCh38 archived low read length ENCFF160NEI bam bam alignments GRCh38 ENCSR974LIK Control ChIP-seq /human-donors/ENCDO017FQX/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF740VPJ/, /files/ENCFF643CGH/ 1161521036 ENCODE Processing Pipeline 9d9861b33bce7e079939a093a8ccad3d https://www.encodeproject.org/files/ENCFF160NEI/@@download/ENCFF160NEI.bam released s3://encode-public/2016/12/19/77980507-2d54-4ff0-b52c-89220967625d/ENCFF160NEI.bam ENCODE3 GRCh38 archived low read length ENCFF296ULE bam bam unfiltered alignments GRCh38 ENCSR974LIK Control ChIP-seq /human-donors/ENCDO017FQX/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF740VPJ/ 1561888619 ENCODE Processing Pipeline 5b9e15010b2178105bad6c6d0f003810 https://www.encodeproject.org/files/ENCFF296ULE/@@download/ENCFF296ULE.bam released s3://encode-public/2020/11/13/d4619453-a7da-4dad-a0dd-4ca10328bc13/ENCFF296ULE.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF579JIX bam bam alignments GRCh38 ENCSR974LIK Control ChIP-seq /human-donors/ENCDO017FQX/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF740VPJ/ 1250215806 ENCODE Processing Pipeline 7603f697114e560cf55a7bf7c5b7174b https://www.encodeproject.org/files/ENCFF579JIX/@@download/ENCFF579JIX.bam released s3://encode-public/2020/11/13/e200742f-e104-4789-bcc3-9f185adf51d6/ENCFF579JIX.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF395MBL tagAlign tagAlign alignments hg19 ENCSR664SHQ Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF769XXQ/ 51042611 Anshul Kundaje, Stanford 50845f891e242cdf89e459a165226903 https://www.encodeproject.org/files/ENCFF395MBL/@@download/ENCFF395MBL.tagAlign.gz archived s3://encode-public/2016/05/02/aec4745a-3afa-4752-aec0-03fc9a645757/ENCFF395MBL.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF732LQD tagAlign tagAlign alignments hg19 ENCSR664SHQ Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF389FEH/ 99785413 Anshul Kundaje, Stanford 77400de69190dca36ca5eb936c7ba643 https://www.encodeproject.org/files/ENCFF732LQD/@@download/ENCFF732LQD.tagAlign.gz archived s3://encode-public/2016/05/02/40f1087d-5dd7-45ba-8c67-426470087b36/ENCFF732LQD.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF389FEH fastq fastq reads ENCSR664SHQ Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 782718221 Zhiping Weng, UMass 34bb1bd98717d6ed25246a5ea92b9d1a SRA:SRR037642 https://www.encodeproject.org/files/ENCFF389FEH/@@download/ENCFF389FEH.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/11/78af44e1-9262-4497-b5f9-49ceec188a8e/ENCFF389FEH.fastq.gz low read depth, low read length ENCFF769XXQ fastq fastq reads ENCSR664SHQ Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 462480621 Zhiping Weng, UMass 9c6c474adbeadac7772b8998b8f485fa SRA:SRR037641 https://www.encodeproject.org/files/ENCFF769XXQ/@@download/ENCFF769XXQ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/19a4b44b-04d5-4bb3-abe6-3c83568a2e1c/ENCFF769XXQ.fastq.gz low read depth, low read length ENCFF167BVO bam bam unfiltered alignments GRCh38 ENCSR664SHQ Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF389FEH/, /files/ENCFF643CGH/, /files/ENCFF769XXQ/ 1499668071 ENCODE Processing Pipeline 06d0e3cc0f6559147866eaef96b7bf71 https://www.encodeproject.org/files/ENCFF167BVO/@@download/ENCFF167BVO.bam released s3://encode-public/2017/04/16/dc21e521-f3e8-4b2a-a2c1-ac2e0248406b/ENCFF167BVO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF470LQI bam bam unfiltered alignments hg19 ENCSR664SHQ Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF389FEH/, /files/ENCFF807MUK/, /files/ENCFF769XXQ/ 1495384534 ENCODE Processing Pipeline fc7befad5c0195d83ce80d87ac7a08d5 https://www.encodeproject.org/files/ENCFF470LQI/@@download/ENCFF470LQI.bam released s3://encode-public/2017/04/16/c8681c5c-98c4-48e4-b8f8-251cea696a1e/ENCFF470LQI.bam ENCODE3 hg19 archived low read depth, low read length ENCFF617YEB bam bam alignments GRCh38 ENCSR664SHQ Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF389FEH/, 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ENCSR247NUF Control ChIP-seq /human-donors/ENCDO438RUL/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF489KLF/, /files/ENCFF131YWN/, /files/ENCFF284FRV/, /files/ENCFF994OXJ/, /files/ENCFF643CGH/ 386849520 ENCODE Processing Pipeline fc213cb5163f4c3e713114cfa3f0b13c https://www.encodeproject.org/files/ENCFF715ZRV/@@download/ENCFF715ZRV.bam released s3://encode-public/2018/01/18/bef58de3-63ff-4477-8e31-2ce194860113/ENCFF715ZRV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF556KHR bam bam redacted alignments GRCh38 ENCSR247NUF Control ChIP-seq /human-donors/ENCDO438RUL/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF489KLF/, /files/ENCFF131YWN/, /files/ENCFF284FRV/, /files/ENCFF994OXJ/, /files/ENCFF643CGH/ 247172263 ENCODE Processing Pipeline 2907548b9b3049cb4955b176d63a4551 https://www.encodeproject.org/files/ENCFF556KHR/@@download/ENCFF556KHR.bam released s3://encode-public/2018/01/18/b1061804-ae17-4527-9083-3acb23d95a69/ENCFF556KHR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF482FHF bam bam redacted unfiltered alignments hg19 ENCSR247NUF Control ChIP-seq /human-donors/ENCDO438RUL/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF489KLF/, /files/ENCFF131YWN/, /files/ENCFF284FRV/, /files/ENCFF994OXJ/ 382322262 ENCODE Processing Pipeline 5665f6c85e0d625fa01f509bcbb05c53 https://www.encodeproject.org/files/ENCFF482FHF/@@download/ENCFF482FHF.bam released s3://encode-public/2018/01/19/18c42406-b28e-4a29-aeaf-60e3c0f15a37/ENCFF482FHF.bam ENCODE3 hg19 archived low read depth, low read length ENCFF207QUU bam bam redacted alignments hg19 ENCSR247NUF Control ChIP-seq /human-donors/ENCDO438RUL/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF489KLF/, /files/ENCFF131YWN/, /files/ENCFF284FRV/, 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archived mild to moderate bottlenecking, low read length ENCFF080YJE bam bam unfiltered alignments GRCh38 ENCSR545ZKE Control ChIP-seq /human-donors/ENCDO978TAT/ CL:0000775 neutrophil primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF490ENT/, /files/ENCFF643CGH/, /files/ENCFF339IWR/ 3291243721 ENCODE Processing Pipeline b67322ae722440e718210aeefe11e115 https://www.encodeproject.org/files/ENCFF080YJE/@@download/ENCFF080YJE.bam released s3://encode-public/2017/03/26/5d0b64a4-6aba-45ff-92fd-3cbf3ef68157/ENCFF080YJE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF294RDL bam bam unfiltered alignments GRCh38 ENCSR545ZKE Control ChIP-seq /human-donors/ENCDO978TAT/ CL:0000775 neutrophil primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF490ENT/, /files/ENCFF110MCL/, /files/ENCFF339IWR/ 3964190939 ENCODE Processing Pipeline d913040cda8f117f365e8c36c2c6076f https://www.encodeproject.org/files/ENCFF294RDL/@@download/ENCFF294RDL.bam released s3://encode-public/2020/10/08/5db437d7-972d-43a4-b081-c341033173f1/ENCFF294RDL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF695GDI bam bam alignments GRCh38 ENCSR545ZKE Control ChIP-seq /human-donors/ENCDO978TAT/ CL:0000775 neutrophil primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF490ENT/, /files/ENCFF110MCL/, /files/ENCFF339IWR/ 1352789797 ENCODE Processing Pipeline c31eb8c5228c45fdbf54e77b1e423f0b https://www.encodeproject.org/files/ENCFF695GDI/@@download/ENCFF695GDI.bam released s3://encode-public/2020/10/08/7307b4c5-f4cb-40b6-bfff-700c98607134/ENCFF695GDI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF199TIU bam bam alignments ce10 ENCSR276KDH Control ChIP-seq /worm-donors/ENCDO327YXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178384/'], '@type': ['Target', 'Item'], 'name': 'F55B11.4-celegans', 'label': 'F55B11.4', '@id': '/targets/F55B11.4-celegans/', 'title': 'F55B11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c4590778-1108-4a0e-8d6c-97ce4ec60ea7', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF197OTU/ 275664868 Kevin White, UChicago 373a7164a0cf35fd0567e616c52e4678 https://www.encodeproject.org/files/ENCFF199TIU/@@download/ENCFF199TIU.bam released s3://encode-public/2015/08/19/a4af0c0d-453a-413c-8e07-c5b04d975f78/ENCFF199TIU.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF962ACT bigWig bigWig read-depth normalized signal ce10 ENCSR276KDH Control ChIP-seq /worm-donors/ENCDO327YXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178384/'], '@type': ['Target', 'Item'], 'name': 'F55B11.4-celegans', 'label': 'F55B11.4', '@id': '/targets/F55B11.4-celegans/', 'title': 'F55B11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c4590778-1108-4a0e-8d6c-97ce4ec60ea7', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF199TIU/ 9958306 Kevin White, UChicago 04e34f5a52cea013d90428a0ea703c5d https://www.encodeproject.org/files/ENCFF962ACT/@@download/ENCFF962ACT.bigWig released s3://encode-public/2015/10/02/de90040a-a8eb-4aa8-b363-a69b4e2b091f/ENCFF962ACT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF567VCT bigWig bigWig signal of unique reads ce10 ENCSR276KDH Control ChIP-seq /worm-donors/ENCDO327YXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178384/'], '@type': ['Target', 'Item'], 'name': 'F55B11.4-celegans', 'label': 'F55B11.4', '@id': '/targets/F55B11.4-celegans/', 'title': 'F55B11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c4590778-1108-4a0e-8d6c-97ce4ec60ea7', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF199TIU/ 9962357 Kevin White, UChicago 207fc4d5f7efb675a226af216354f056 https://www.encodeproject.org/files/ENCFF567VCT/@@download/ENCFF567VCT.bigWig released s3://encode-public/2015/10/02/24604248-d580-443c-93cc-8ab253e57141/ENCFF567VCT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF197OTU fastq fastq reads ENCSR276KDH Control ChIP-seq /worm-donors/ENCDO327YXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178384/'], '@type': ['Target', 'Item'], 'name': 'F55B11.4-celegans', 'label': 'F55B11.4', '@id': '/targets/F55B11.4-celegans/', 'title': 'F55B11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c4590778-1108-4a0e-8d6c-97ce4ec60ea7', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 235705698 Kevin White, UChicago 42310bf877a8eb8373c70e8d54cc7dbf https://www.encodeproject.org/files/ENCFF197OTU/@@download/ENCFF197OTU.fastq.gz Illumina HiSeq 2500 /files/ENCFF746VWD/ released s3://encode-public/2015/08/24/086a6924-eaaa-4885-809b-a49c7e8bc91e/ENCFF197OTU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF610YHR bigWig bigWig signal of unique reads ce11 ENCSR276KDH Control ChIP-seq /worm-donors/ENCDO327YXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178384/'], '@type': ['Target', 'Item'], 'name': 'F55B11.4-celegans', 'label': 'F55B11.4', '@id': '/targets/F55B11.4-celegans/', 'title': 'F55B11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c4590778-1108-4a0e-8d6c-97ce4ec60ea7', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF532KNW/ 9959919 Kevin White, UChicago 1494b0d49f5e75a9f7f963e61eced762 https://www.encodeproject.org/files/ENCFF610YHR/@@download/ENCFF610YHR.bigWig released s3://encode-public/2016/02/03/f0444679-3b88-44a5-923b-9c1c69dfa13d/ENCFF610YHR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF228EWZ bigWig bigWig read-depth normalized signal ce11 ENCSR276KDH Control ChIP-seq /worm-donors/ENCDO327YXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178384/'], '@type': ['Target', 'Item'], 'name': 'F55B11.4-celegans', 'label': 'F55B11.4', '@id': '/targets/F55B11.4-celegans/', 'title': 'F55B11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c4590778-1108-4a0e-8d6c-97ce4ec60ea7', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF532KNW/ 9956921 Kevin White, UChicago 4a84f9c76d844dff4b1125d651ae296c https://www.encodeproject.org/files/ENCFF228EWZ/@@download/ENCFF228EWZ.bigWig released s3://encode-public/2016/02/03/bb89ff50-32ce-4a0d-a4d7-82638e34af26/ENCFF228EWZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF532KNW bam bam alignments ce11 ENCSR276KDH Control ChIP-seq /worm-donors/ENCDO327YXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178384/'], '@type': ['Target', 'Item'], 'name': 'F55B11.4-celegans', 'label': 'F55B11.4', '@id': '/targets/F55B11.4-celegans/', 'title': 'F55B11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c4590778-1108-4a0e-8d6c-97ce4ec60ea7', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF197OTU/ 275935148 Kevin White, UChicago babb6bc2ff58b646ae9d1804f86762fe https://www.encodeproject.org/files/ENCFF532KNW/@@download/ENCFF532KNW.bam released s3://encode-public/2016/01/17/b0b1affb-6ed4-45a5-b25d-1b4fc27a40ef/ENCFF532KNW.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF145GCW fastq fastq reads ENCSR101VVI Control ChIP-seq /worm-donors/ENCDO022KND/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175955/'], '@type': ['Target', 'Item'], 'name': 'sma-3-celegans', 'label': 'sma-3', '@id': '/targets/sma-3-celegans/', 'title': 'sma-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '145c68e4-2064-40d1-b8ee-df6430f26384', 'status': 'released'} ce10 III 6859735 6867560 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 772598187 Kevin White, UChicago 7e676360c83c55f63a791033bade1891 https://www.encodeproject.org/files/ENCFF145GCW/@@download/ENCFF145GCW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/5688b80c-c050-42e6-921b-55dd0af77616/ENCFF145GCW.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF495XON bam bam alignments ce10 ENCSR101VVI Control ChIP-seq /worm-donors/ENCDO022KND/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175955/'], '@type': ['Target', 'Item'], 'name': 'sma-3-celegans', 'label': 'sma-3', '@id': '/targets/sma-3-celegans/', 'title': 'sma-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '145c68e4-2064-40d1-b8ee-df6430f26384', 'status': 'released'} ce10 III 6859735 6867560 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF145GCW/ 1104363805 Kevin White, UChicago bfe045fef75a9b68693010d5f857b3de https://www.encodeproject.org/files/ENCFF495XON/@@download/ENCFF495XON.bam released s3://encode-public/2015/08/07/63db78ea-6c24-473e-b820-026781ca6454/ENCFF495XON.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF950TXS bigWig bigWig read-depth normalized signal ce10 ENCSR101VVI Control ChIP-seq /worm-donors/ENCDO022KND/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175955/'], '@type': ['Target', 'Item'], 'name': 'sma-3-celegans', 'label': 'sma-3', '@id': '/targets/sma-3-celegans/', 'title': 'sma-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '145c68e4-2064-40d1-b8ee-df6430f26384', 'status': 'released'} ce10 III 6859735 6867560 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF495XON/ 10065073 Kevin White, UChicago a0bf89ebf28e0bd6fadb810c856d672e https://www.encodeproject.org/files/ENCFF950TXS/@@download/ENCFF950TXS.bigWig released s3://encode-public/2015/10/02/7fe436d6-de66-47d9-ac5d-3c6ff09d3f36/ENCFF950TXS.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF511DMP bigWig bigWig signal of unique reads ce10 ENCSR101VVI Control ChIP-seq /worm-donors/ENCDO022KND/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175955/'], '@type': ['Target', 'Item'], 'name': 'sma-3-celegans', 'label': 'sma-3', '@id': '/targets/sma-3-celegans/', 'title': 'sma-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '145c68e4-2064-40d1-b8ee-df6430f26384', 'status': 'released'} ce10 III 6859735 6867560 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF495XON/ 10027101 Kevin White, UChicago 1983d3c2a153a353411250afa1f6a318 https://www.encodeproject.org/files/ENCFF511DMP/@@download/ENCFF511DMP.bigWig released s3://encode-public/2015/10/02/35a44931-6701-479d-9823-68c684b2b97f/ENCFF511DMP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF546DSX bam bam alignments ce11 ENCSR101VVI Control ChIP-seq /worm-donors/ENCDO022KND/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175955/'], '@type': ['Target', 'Item'], 'name': 'sma-3-celegans', 'label': 'sma-3', '@id': '/targets/sma-3-celegans/', 'title': 'sma-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '145c68e4-2064-40d1-b8ee-df6430f26384', 'status': 'released'} ce10 III 6859735 6867560 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF145GCW/ 1105284722 Kevin White, UChicago 2c5d4bd5a6bc042f1ec0b5f056b634f4 https://www.encodeproject.org/files/ENCFF546DSX/@@download/ENCFF546DSX.bam released s3://encode-public/2016/01/19/6a715b88-5b9e-4ec4-8538-bf84bfe71d5d/ENCFF546DSX.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF766RZY bigWig bigWig signal of unique reads ce11 ENCSR101VVI Control ChIP-seq /worm-donors/ENCDO022KND/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175955/'], '@type': ['Target', 'Item'], 'name': 'sma-3-celegans', 'label': 'sma-3', '@id': '/targets/sma-3-celegans/', 'title': 'sma-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '145c68e4-2064-40d1-b8ee-df6430f26384', 'status': 'released'} ce10 III 6859735 6867560 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF546DSX/ 10023242 Kevin White, UChicago 749b26199aee9c6b5ed3b109d7196e8c https://www.encodeproject.org/files/ENCFF766RZY/@@download/ENCFF766RZY.bigWig released s3://encode-public/2016/02/03/32b289e3-8342-42e9-ae0a-ae474b1c6eb8/ENCFF766RZY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF008XWI bigWig bigWig read-depth normalized signal ce11 ENCSR101VVI Control ChIP-seq /worm-donors/ENCDO022KND/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175955/'], '@type': ['Target', 'Item'], 'name': 'sma-3-celegans', 'label': 'sma-3', '@id': '/targets/sma-3-celegans/', 'title': 'sma-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '145c68e4-2064-40d1-b8ee-df6430f26384', 'status': 'released'} ce10 III 6859735 6867560 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF546DSX/ 10058169 Kevin White, UChicago b02cca53953dbe0abdd48df08b91725e https://www.encodeproject.org/files/ENCFF008XWI/@@download/ENCFF008XWI.bigWig released s3://encode-public/2016/02/03/1cf4434f-2ec5-401c-9e37-cc59a7a94998/ENCFF008XWI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF746JNO fastq fastq reads ENCSR335VJF Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 568438349 Kevin White, UChicago 860827a991f62161cfe39ecde05e4c18 https://www.encodeproject.org/files/ENCFF746JNO/@@download/ENCFF746JNO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/214a9b8a-4202-4ffd-b5ab-089806967655/ENCFF746JNO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF043KFB bam bam alignments ce10 ENCSR335VJF Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF746JNO/ 812428589 Kevin White, UChicago b65787adadec735c13c4ff18a18b6e97 https://www.encodeproject.org/files/ENCFF043KFB/@@download/ENCFF043KFB.bam released s3://encode-public/2015/08/07/191bb9df-6bb9-42cc-83e9-443790d0c29b/ENCFF043KFB.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF052YKH bigWig bigWig signal of unique reads ce10 ENCSR335VJF Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF043KFB/ 9954688 Kevin White, UChicago 1692385f697751f80e6909365632c634 https://www.encodeproject.org/files/ENCFF052YKH/@@download/ENCFF052YKH.bigWig released s3://encode-public/2015/10/02/2addb039-040e-4a62-96d7-95dc2d7a267d/ENCFF052YKH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF319MDZ bigWig bigWig read-depth normalized signal ce10 ENCSR335VJF Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF043KFB/ 9958754 Kevin White, UChicago 085d8e752b6a03de5d22c30f634c0ea0 https://www.encodeproject.org/files/ENCFF319MDZ/@@download/ENCFF319MDZ.bigWig released s3://encode-public/2015/10/02/47039841-1479-4cf4-b28a-f21d2a18e1eb/ENCFF319MDZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF633NDW bam bam alignments ce11 ENCSR335VJF Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF746JNO/ 813093760 Kevin White, UChicago 7d6ba4fa925b8f5f97496cb8fb4e4ef3 https://www.encodeproject.org/files/ENCFF633NDW/@@download/ENCFF633NDW.bam released s3://encode-public/2016/01/20/08915084-1472-4263-9da9-247959ce4623/ENCFF633NDW.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF593EZI bigWig bigWig signal of unique reads ce11 ENCSR335VJF Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF633NDW/ 9951214 Kevin White, UChicago b3d6692154775af06048b5ec199550ae https://www.encodeproject.org/files/ENCFF593EZI/@@download/ENCFF593EZI.bigWig released s3://encode-public/2016/02/03/1fe39217-829c-4fa4-91a1-bee786bf25fd/ENCFF593EZI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF902BEP bigWig bigWig read-depth normalized signal ce11 ENCSR335VJF Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF633NDW/ 9953596 Kevin White, UChicago e698a9819c3fb6e80b56c79e0691a157 https://www.encodeproject.org/files/ENCFF902BEP/@@download/ENCFF902BEP.bigWig released s3://encode-public/2016/02/03/cef9154a-106b-4930-9359-5101b4ffaea7/ENCFF902BEP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF178ZOM fastq fastq reads ENCSR563BQL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-11-22 modENCODE >200 1 1_1 44 single-ended 1138329902 Kevin White, UChicago ba857a18120d519fdb2dd8d457ccbcf0 https://www.encodeproject.org/files/ENCFF178ZOM/@@download/ENCFF178ZOM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/16/882abe68-875d-4ef6-bbd8-c80d69b47b24/ENCFF178ZOM.fastq.gz ENCFF946AKF bam bam alignments dm3 ENCSR563BQL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-11-22 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF178ZOM/ 1406348972 Kevin White, UChicago 9f5f8445807ddf1d9b1698e318d40d4e https://www.encodeproject.org/files/ENCFF946AKF/@@download/ENCFF946AKF.bam released s3://encode-public/2017/06/19/479ff437-deb2-474c-a256-ac88e3a69676/ENCFF946AKF.bam Lab custom dm3 archived ENCFF265PCV bam bam alignments dm6 ENCSR563BQL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-11-22 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF178ZOM/ 1402316680 Kevin White, UChicago d2121afae2585f9d62197ace0d3ed9c1 https://www.encodeproject.org/files/ENCFF265PCV/@@download/ENCFF265PCV.bam released s3://encode-public/2017/06/28/7c9fcebd-b082-41c4-9c0b-a856f7205ea4/ENCFF265PCV.bam Lab custom dm6 released ENCFF054CJC bigWig bigWig signal of unique reads dm3 ENCSR563BQL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-11-22 modENCODE >200 1 1_1 /files/ENCFF946AKF/ 15479541 Kevin White, UChicago 765bcc4f9023a928126987d7ad91c965 https://www.encodeproject.org/files/ENCFF054CJC/@@download/ENCFF054CJC.bigWig released s3://encode-public/2017/06/29/5c89c3bc-fba6-4ed2-b510-24f06535a0a6/ENCFF054CJC.bigWig Lab custom dm3 archived ENCFF398XTM bigWig bigWig read-depth normalized signal dm3 ENCSR563BQL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-11-22 modENCODE >200 1 1_1 /files/ENCFF946AKF/ 15520026 Kevin White, UChicago 8607ef459a200fdbc3fead68a3bece27 https://www.encodeproject.org/files/ENCFF398XTM/@@download/ENCFF398XTM.bigWig released s3://encode-public/2017/06/29/a88ca3a3-be97-40e9-8641-35f226cec986/ENCFF398XTM.bigWig Lab custom dm3 archived ENCFF614QAR bigWig bigWig read-depth normalized signal dm6 ENCSR563BQL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-11-22 modENCODE >200 1 1_1 /files/ENCFF265PCV/ 17729178 Kevin White, UChicago 74a1601da26b6e98e3388add1e3c6250 https://www.encodeproject.org/files/ENCFF614QAR/@@download/ENCFF614QAR.bigWig released s3://encode-public/2017/06/30/1fbcaa08-1a3f-4678-b8c9-0f23b5c0d4cb/ENCFF614QAR.bigWig Lab custom dm6 released ENCFF477AZJ bigWig bigWig signal of unique reads dm6 ENCSR563BQL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-11-22 modENCODE >200 1 1_1 /files/ENCFF265PCV/ 17663250 Kevin White, UChicago 343531c60e552d69ec31048d8f108635 https://www.encodeproject.org/files/ENCFF477AZJ/@@download/ENCFF477AZJ.bigWig released s3://encode-public/2017/06/30/bea3f4e9-0f53-4690-91ac-3fbdb3c3227a/ENCFF477AZJ.bigWig Lab custom dm6 released ENCFF184WZS fastq fastq reads ENCSR543WTO Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-21 modENCODE >200 1 1_1 50 single-ended 1214537845 Kevin White, UChicago 7e018d9cf37aafe048f6af0d3a9037b6 https://www.encodeproject.org/files/ENCFF184WZS/@@download/ENCFF184WZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF348OXP/ released s3://encode-public/2016/08/24/fc56bcc6-3a66-4b41-a3e5-3b890cd82d87/ENCFF184WZS.fastq.gz ENCFF458DOV bam bam alignments dm3 ENCSR543WTO Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-21 modENCODE >200 1 1_1 50 /files/ENCFF184WZS/, /files/ENCFF059UHX/ 1529887982 Kevin White, UChicago 6c6fea8b632834b83f125ee91985ea4a https://www.encodeproject.org/files/ENCFF458DOV/@@download/ENCFF458DOV.bam released s3://encode-public/2017/12/22/73a2455a-7bcf-4f26-ad37-1463548004f1/ENCFF458DOV.bam Lab custom dm3 archived ENCFF747JPE bam bam alignments dm6 ENCSR543WTO Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-21 modENCODE >200 1 1_1 50 /files/ENCFF184WZS/, /files/ENCFF479RCH/ 1522666339 Kevin White, UChicago e19a0d9481b200fb7ae39a7036a3eb55 https://www.encodeproject.org/files/ENCFF747JPE/@@download/ENCFF747JPE.bam released s3://encode-public/2017/12/24/28d23898-5cdf-4741-924e-c853f2f19b41/ENCFF747JPE.bam Lab custom dm6 released ENCFF675LLH bigWig bigWig signal of unique reads dm3 ENCSR543WTO Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-21 modENCODE >200 1 1_1 /files/ENCFF458DOV/ 15398800 Kevin White, UChicago 270d772cafaa0deb9b528baf8f92ed98 https://www.encodeproject.org/files/ENCFF675LLH/@@download/ENCFF675LLH.bigWig released s3://encode-public/2017/12/24/91224967-b9fc-4fb1-a64d-b4a7fdefe9d0/ENCFF675LLH.bigWig Lab custom dm3 archived ENCFF758CAH bigWig bigWig read-depth normalized signal dm3 ENCSR543WTO Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-21 modENCODE >200 1 1_1 /files/ENCFF458DOV/ 15395432 Kevin White, UChicago a77843290262eb552ec8015a89a5b40c https://www.encodeproject.org/files/ENCFF758CAH/@@download/ENCFF758CAH.bigWig released s3://encode-public/2017/12/24/e76b6fca-4f28-4bcf-871d-6337616165f2/ENCFF758CAH.bigWig Lab custom dm3 archived ENCFF896IBH bigWig bigWig signal of unique reads dm6 ENCSR543WTO Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-21 modENCODE >200 1 1_1 /files/ENCFF747JPE/ 17252701 Kevin White, UChicago 38c3c3335ffd0eb321de17c897f0c9bb https://www.encodeproject.org/files/ENCFF896IBH/@@download/ENCFF896IBH.bigWig released s3://encode-public/2017/12/24/3c3f5fb7-1c83-41e7-ae2a-51465ac4ff42/ENCFF896IBH.bigWig Lab custom dm6 released ENCFF437TYD bigWig bigWig read-depth normalized signal dm6 ENCSR543WTO Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-21 modENCODE >200 1 1_1 /files/ENCFF747JPE/ 17253554 Kevin White, UChicago c2d0014b1a755c0a33581589f95e27a2 https://www.encodeproject.org/files/ENCFF437TYD/@@download/ENCFF437TYD.bigWig released s3://encode-public/2017/12/24/1e5abd50-0bd8-4d43-8ef8-5b0ec5ce5d99/ENCFF437TYD.bigWig Lab custom dm6 released ENCFF564TNW fastq fastq reads ENCSR294UFC Control ChIP-seq /fly-donors/ENCDO493AQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47285/'], '@type': ['Target', 'Item'], 'name': 'repo-dmelanogaster', 'label': 'repo', '@id': '/targets/repo-dmelanogaster/', 'title': 'repo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5e2817d7-432b-4bb1-825d-5cb0bacd5192', 'status': 'released'} dm3 3R 14054355 14073996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 792667054 Kevin White, UChicago 56f7da09ae51c1ac99bfea44330a568d https://www.encodeproject.org/files/ENCFF564TNW/@@download/ENCFF564TNW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f18293e9-29e5-49c0-9bfb-5c1eaa5d9657/ENCFF564TNW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF223QDQ bam bam alignments dm3 ENCSR294UFC Control ChIP-seq /fly-donors/ENCDO493AQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47285/'], '@type': ['Target', 'Item'], 'name': 'repo-dmelanogaster', 'label': 'repo', '@id': '/targets/repo-dmelanogaster/', 'title': 'repo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5e2817d7-432b-4bb1-825d-5cb0bacd5192', 'status': 'released'} dm3 3R 14054355 14073996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF564TNW/ 1164710584 Kevin White, UChicago 5bee983d5ec98b4c5b3bec8ccec9a14e https://www.encodeproject.org/files/ENCFF223QDQ/@@download/ENCFF223QDQ.bam released s3://encode-public/2015/08/03/6e511ef4-34e9-49f3-b8ce-6bd0fdf736ae/ENCFF223QDQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF190LXM bigWig bigWig read-depth normalized signal dm3 ENCSR294UFC Control ChIP-seq /fly-donors/ENCDO493AQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47285/'], '@type': ['Target', 'Item'], 'name': 'repo-dmelanogaster', 'label': 'repo', '@id': '/targets/repo-dmelanogaster/', 'title': 'repo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5e2817d7-432b-4bb1-825d-5cb0bacd5192', 'status': 'released'} dm3 3R 14054355 14073996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF223QDQ/ 15409193 Kevin White, UChicago 6c7eea69894c6103fac49cfe0465a20d https://www.encodeproject.org/files/ENCFF190LXM/@@download/ENCFF190LXM.bigWig released s3://encode-public/2015/10/06/9310ca48-034c-45c6-a57e-89c4becfdaca/ENCFF190LXM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF492ISK bigWig bigWig signal of unique reads dm3 ENCSR294UFC Control ChIP-seq /fly-donors/ENCDO493AQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47285/'], '@type': ['Target', 'Item'], 'name': 'repo-dmelanogaster', 'label': 'repo', '@id': '/targets/repo-dmelanogaster/', 'title': 'repo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5e2817d7-432b-4bb1-825d-5cb0bacd5192', 'status': 'released'} dm3 3R 14054355 14073996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF223QDQ/ 15400611 Kevin White, UChicago 1728b6c4015eb5bbca0ba2ff5612b94f https://www.encodeproject.org/files/ENCFF492ISK/@@download/ENCFF492ISK.bigWig released s3://encode-public/2015/10/06/fe7b116d-0372-45ea-b705-ebb0760dc623/ENCFF492ISK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF564JZK bam bam alignments dm6 ENCSR294UFC Control ChIP-seq /fly-donors/ENCDO493AQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47285/'], '@type': ['Target', 'Item'], 'name': 'repo-dmelanogaster', 'label': 'repo', '@id': '/targets/repo-dmelanogaster/', 'title': 'repo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5e2817d7-432b-4bb1-825d-5cb0bacd5192', 'status': 'released'} dm3 3R 14054355 14073996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF564TNW/ 1160319063 Kevin White, UChicago 1df28e409590e2567fa23edb0fd6fa15 https://www.encodeproject.org/files/ENCFF564JZK/@@download/ENCFF564JZK.bam released s3://encode-public/2016/04/22/f8568421-9671-4fef-ac9d-1bfcfe9aeb46/ENCFF564JZK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF434IUW bigWig bigWig signal of unique reads dm6 ENCSR294UFC Control ChIP-seq /fly-donors/ENCDO493AQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47285/'], '@type': ['Target', 'Item'], 'name': 'repo-dmelanogaster', 'label': 'repo', '@id': '/targets/repo-dmelanogaster/', 'title': 'repo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5e2817d7-432b-4bb1-825d-5cb0bacd5192', 'status': 'released'} dm3 3R 14054355 14073996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF564JZK/ 17473290 Kevin White, UChicago 2a9ce9d2aa16959ee19d4efafe459a00 https://www.encodeproject.org/files/ENCFF434IUW/@@download/ENCFF434IUW.bigWig released s3://encode-public/2016/07/02/1b9b73fd-0481-4199-8b6e-7bc3d0e815be/ENCFF434IUW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF451WCD bigWig bigWig read-depth normalized signal dm6 ENCSR294UFC Control ChIP-seq /fly-donors/ENCDO493AQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47285/'], '@type': ['Target', 'Item'], 'name': 'repo-dmelanogaster', 'label': 'repo', '@id': '/targets/repo-dmelanogaster/', 'title': 'repo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5e2817d7-432b-4bb1-825d-5cb0bacd5192', 'status': 'released'} dm3 3R 14054355 14073996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF564JZK/ 17493969 Kevin White, UChicago e5ff5eb0d5d68ca8a46f81486cd1996e https://www.encodeproject.org/files/ENCFF451WCD/@@download/ENCFF451WCD.bigWig released s3://encode-public/2016/07/02/ccd829ad-842f-4858-98cb-b20bbe6cf8ef/ENCFF451WCD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF459PIA fastq fastq reads ENCSR602FMN Control ChIP-seq /fly-donors/ENCDO258YKT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53557/'], '@type': ['Target', 'Item'], 'name': 'esn-dmelanogaster', 'label': 'esn', '@id': '/targets/esn-dmelanogaster/', 'title': 'esn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65aed2d1-eb79-4e3d-9ec6-94c69f172ab4', 'status': 'released'} dm3 2R 2942682 3054585 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 353206565 Kevin White, UChicago ed9b99f1d31656f769a78018beef29d1 https://www.encodeproject.org/files/ENCFF459PIA/@@download/ENCFF459PIA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/fa09658d-c5b9-4d56-b804-7cb8e43e5058/ENCFF459PIA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF387NXT bam bam alignments dm3 ENCSR602FMN Control ChIP-seq /fly-donors/ENCDO258YKT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53557/'], '@type': ['Target', 'Item'], 'name': 'esn-dmelanogaster', 'label': 'esn', '@id': '/targets/esn-dmelanogaster/', 'title': 'esn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65aed2d1-eb79-4e3d-9ec6-94c69f172ab4', 'status': 'released'} dm3 2R 2942682 3054585 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF459PIA/ 525324499 Kevin White, UChicago 4d1da4afbd7db2dd8b30534bbdc3305a https://www.encodeproject.org/files/ENCFF387NXT/@@download/ENCFF387NXT.bam released s3://encode-public/2015/08/03/f3e96121-c0b0-4867-bf31-1f322e9d7e89/ENCFF387NXT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF435FNJ bigWig bigWig signal of unique reads dm3 ENCSR602FMN Control ChIP-seq /fly-donors/ENCDO258YKT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53557/'], '@type': ['Target', 'Item'], 'name': 'esn-dmelanogaster', 'label': 'esn', '@id': '/targets/esn-dmelanogaster/', 'title': 'esn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65aed2d1-eb79-4e3d-9ec6-94c69f172ab4', 'status': 'released'} dm3 2R 2942682 3054585 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF387NXT/ 15211374 Kevin White, UChicago 258bbb0e20b1a33fabd3b4d80d9c8f5d https://www.encodeproject.org/files/ENCFF435FNJ/@@download/ENCFF435FNJ.bigWig released s3://encode-public/2015/10/06/5e2b8cfb-1f28-4280-99f2-59e2cdf74177/ENCFF435FNJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF064JHA bigWig bigWig read-depth normalized signal dm3 ENCSR602FMN Control ChIP-seq /fly-donors/ENCDO258YKT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53557/'], '@type': ['Target', 'Item'], 'name': 'esn-dmelanogaster', 'label': 'esn', '@id': '/targets/esn-dmelanogaster/', 'title': 'esn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65aed2d1-eb79-4e3d-9ec6-94c69f172ab4', 'status': 'released'} dm3 2R 2942682 3054585 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF387NXT/ 15179230 Kevin White, UChicago aa0529f1e07965528ca6b9297283bb0e https://www.encodeproject.org/files/ENCFF064JHA/@@download/ENCFF064JHA.bigWig released s3://encode-public/2015/10/06/04195e06-8c33-407b-af23-7c8b6332ae2d/ENCFF064JHA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF029EZI bam bam alignments dm6 ENCSR602FMN Control ChIP-seq /fly-donors/ENCDO258YKT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53557/'], '@type': ['Target', 'Item'], 'name': 'esn-dmelanogaster', 'label': 'esn', '@id': '/targets/esn-dmelanogaster/', 'title': 'esn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65aed2d1-eb79-4e3d-9ec6-94c69f172ab4', 'status': 'released'} dm3 2R 2942682 3054585 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF459PIA/ 523970002 Kevin White, UChicago 12227dc570c3f600656301ffb556a553 https://www.encodeproject.org/files/ENCFF029EZI/@@download/ENCFF029EZI.bam released s3://encode-public/2016/04/20/6918a48a-dde6-4311-a3dc-bd62216ee9c6/ENCFF029EZI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF644DKN bigWig bigWig signal of unique reads dm6 ENCSR602FMN Control ChIP-seq /fly-donors/ENCDO258YKT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53557/'], '@type': ['Target', 'Item'], 'name': 'esn-dmelanogaster', 'label': 'esn', '@id': '/targets/esn-dmelanogaster/', 'title': 'esn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65aed2d1-eb79-4e3d-9ec6-94c69f172ab4', 'status': 'released'} dm3 2R 2942682 3054585 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF029EZI/ 17314978 Kevin White, UChicago eac13834d791e470527f0eca0e5559f4 https://www.encodeproject.org/files/ENCFF644DKN/@@download/ENCFF644DKN.bigWig released s3://encode-public/2016/06/21/ca8c3e3d-9af9-495c-aa7e-f6f099220cf0/ENCFF644DKN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF378ERV bigWig bigWig read-depth normalized signal dm6 ENCSR602FMN Control ChIP-seq /fly-donors/ENCDO258YKT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53557/'], '@type': ['Target', 'Item'], 'name': 'esn-dmelanogaster', 'label': 'esn', '@id': '/targets/esn-dmelanogaster/', 'title': 'esn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65aed2d1-eb79-4e3d-9ec6-94c69f172ab4', 'status': 'released'} dm3 2R 2942682 3054585 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF029EZI/ 17246434 Kevin White, UChicago 7ccb47a5977b8000ba45758bfef99341 https://www.encodeproject.org/files/ENCFF378ERV/@@download/ENCFF378ERV.bigWig released s3://encode-public/2016/06/21/5a151645-f4c0-45d2-aadc-b8a76693ecda/ENCFF378ERV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF807EYA fastq fastq reads ENCSR251CBF Control ChIP-seq /fly-donors/ENCDO024EFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43825/'], '@type': ['Target', 'Item'], 'name': 'sv-dmelanogaster', 'label': 'sv', '@id': '/targets/sv-dmelanogaster/', 'title': 'sv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ac4e99b9-a38e-4fc8-8eaf-63530978ab98', 'status': 'released'} dm3 4 1063819 1151317 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 396633850 Kevin White, UChicago d51bf8112dfe62aee295860b5b09be4d https://www.encodeproject.org/files/ENCFF807EYA/@@download/ENCFF807EYA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f5d0c09d-743a-431a-be7a-14b4df21b784/ENCFF807EYA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF831NLI bam bam alignments dm3 ENCSR251CBF Control ChIP-seq /fly-donors/ENCDO024EFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43825/'], '@type': ['Target', 'Item'], 'name': 'sv-dmelanogaster', 'label': 'sv', '@id': '/targets/sv-dmelanogaster/', 'title': 'sv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ac4e99b9-a38e-4fc8-8eaf-63530978ab98', 'status': 'released'} dm3 4 1063819 1151317 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF807EYA/ 569131220 Kevin White, UChicago 50da260f4ee6450098741c3871fe88ec https://www.encodeproject.org/files/ENCFF831NLI/@@download/ENCFF831NLI.bam released s3://encode-public/2015/08/05/b2dd1a99-6a39-4763-a0fa-6c6dbd26fd50/ENCFF831NLI.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF055BEQ bigWig bigWig read-depth normalized signal dm3 ENCSR251CBF Control ChIP-seq /fly-donors/ENCDO024EFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43825/'], '@type': ['Target', 'Item'], 'name': 'sv-dmelanogaster', 'label': 'sv', '@id': '/targets/sv-dmelanogaster/', 'title': 'sv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ac4e99b9-a38e-4fc8-8eaf-63530978ab98', 'status': 'released'} dm3 4 1063819 1151317 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF831NLI/ 15221773 Kevin White, UChicago 6b45b523ad083e5847b86deed105cb0e https://www.encodeproject.org/files/ENCFF055BEQ/@@download/ENCFF055BEQ.bigWig released s3://encode-public/2015/10/05/23948047-8478-4a94-a096-8e3758cbb891/ENCFF055BEQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF723JMA bigWig bigWig signal of unique reads dm3 ENCSR251CBF Control ChIP-seq /fly-donors/ENCDO024EFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43825/'], '@type': ['Target', 'Item'], 'name': 'sv-dmelanogaster', 'label': 'sv', '@id': '/targets/sv-dmelanogaster/', 'title': 'sv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ac4e99b9-a38e-4fc8-8eaf-63530978ab98', 'status': 'released'} dm3 4 1063819 1151317 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF831NLI/ 15285336 Kevin White, UChicago 97fd04c075c0de79bbd6309833106975 https://www.encodeproject.org/files/ENCFF723JMA/@@download/ENCFF723JMA.bigWig released s3://encode-public/2015/10/05/b7b0b2eb-2a42-4eaa-bec8-3d6ad3be85ef/ENCFF723JMA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF963NEH bam bam alignments dm6 ENCSR251CBF Control ChIP-seq /fly-donors/ENCDO024EFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43825/'], '@type': ['Target', 'Item'], 'name': 'sv-dmelanogaster', 'label': 'sv', '@id': '/targets/sv-dmelanogaster/', 'title': 'sv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ac4e99b9-a38e-4fc8-8eaf-63530978ab98', 'status': 'released'} dm3 4 1063819 1151317 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF807EYA/ 566336997 Kevin White, UChicago daf6f2b91c8a77795d3880534437ce5a https://www.encodeproject.org/files/ENCFF963NEH/@@download/ENCFF963NEH.bam released s3://encode-public/2016/04/20/010aa097-aae2-4db9-b830-23ffd3a0ebfd/ENCFF963NEH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF493WEH bigWig bigWig read-depth normalized signal dm6 ENCSR251CBF Control ChIP-seq /fly-donors/ENCDO024EFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43825/'], '@type': ['Target', 'Item'], 'name': 'sv-dmelanogaster', 'label': 'sv', '@id': '/targets/sv-dmelanogaster/', 'title': 'sv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ac4e99b9-a38e-4fc8-8eaf-63530978ab98', 'status': 'released'} dm3 4 1063819 1151317 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF963NEH/ 17312317 Kevin White, UChicago 6c8e804c3e67abb8882d0f1dfbbf2ea0 https://www.encodeproject.org/files/ENCFF493WEH/@@download/ENCFF493WEH.bigWig released s3://encode-public/2016/06/21/ebe73d42-abc8-413b-95ac-00d9e42071bc/ENCFF493WEH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF922JXX bigWig bigWig signal of unique reads dm6 ENCSR251CBF Control ChIP-seq /fly-donors/ENCDO024EFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43825/'], '@type': ['Target', 'Item'], 'name': 'sv-dmelanogaster', 'label': 'sv', '@id': '/targets/sv-dmelanogaster/', 'title': 'sv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ac4e99b9-a38e-4fc8-8eaf-63530978ab98', 'status': 'released'} dm3 4 1063819 1151317 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF963NEH/ 17410742 Kevin White, UChicago ed9a7ed81c1b6001be4400f2644abe9f https://www.encodeproject.org/files/ENCFF922JXX/@@download/ENCFF922JXX.bigWig released s3://encode-public/2016/06/21/4fb88550-e63d-4d64-8713-706d46de8718/ENCFF922JXX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF645BCP tagAlign tagAlign alignments hg19 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF757POM/, /files/ENCFF805ZJS/, /files/ENCFF632EPK/, /files/ENCFF039VDX/ 220248448 Anshul Kundaje, Stanford 4c5bfc39d5b8de10054151855c9f0472 https://www.encodeproject.org/files/ENCFF645BCP/@@download/ENCFF645BCP.tagAlign.gz archived s3://encode-public/2016/03/30/9e9f4338-ecbd-4d32-9221-a4d78dddff06/ENCFF645BCP.tagAlign.gz Lab custom hg19 archived low read length ENCFF039VDX fastq fastq reads ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 449072530 Zhiping Weng, UMass fad139a84448b673db4e0ce9c6ddc7d0 SRA:SRR1067197 https://www.encodeproject.org/files/ENCFF039VDX/@@download/ENCFF039VDX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/851bf1b8-9250-4e83-a6b7-a7bfe1356641/ENCFF039VDX.fastq.gz low read length ENCFF632EPK fastq fastq reads ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 501156768 Zhiping Weng, UMass 96dfe27b9daa5b3a40c676af69c74987 SRA:SRR1067201 https://www.encodeproject.org/files/ENCFF632EPK/@@download/ENCFF632EPK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/31a4b68a-e165-46b4-ab0f-c94b39e34ed2/ENCFF632EPK.fastq.gz low read length ENCFF805ZJS fastq fastq reads ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 440627670 Zhiping Weng, UMass 3f334d85b9398a7e6b43c2ad42e66579 SRA:SRR1067194 https://www.encodeproject.org/files/ENCFF805ZJS/@@download/ENCFF805ZJS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/25332eba-edbe-4d9a-ab91-7cb4c38d27f9/ENCFF805ZJS.fastq.gz low read length ENCFF757POM fastq fastq reads ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 476048412 Zhiping Weng, UMass a605b67cce2b345e1b5d9ec1fe0bd705 SRA:SRR1067282 https://www.encodeproject.org/files/ENCFF757POM/@@download/ENCFF757POM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/6190f976-33e7-449e-b489-2f35040e142d/ENCFF757POM.fastq.gz low read length ENCFF039ZCG bam bam unfiltered alignments GRCh38 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF757POM/, /files/ENCFF805ZJS/, /files/ENCFF632EPK/, /files/ENCFF643CGH/, /files/ENCFF039VDX/ 2153054155 ENCODE Processing Pipeline d70b70bfdeee82cfc87699f14a61933a https://www.encodeproject.org/files/ENCFF039ZCG/@@download/ENCFF039ZCG.bam released s3://encode-public/2016/12/19/6671fccc-9612-4c85-b071-c3b5b464986d/ENCFF039ZCG.bam ENCODE3 GRCh38 archived low read length ENCFF754UIL bam bam unfiltered alignments hg19 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF757POM/, /files/ENCFF805ZJS/, /files/ENCFF632EPK/, /files/ENCFF039VDX/ 2138715695 ENCODE Processing Pipeline 8694a8f807250876184925a8aad7b07b https://www.encodeproject.org/files/ENCFF754UIL/@@download/ENCFF754UIL.bam released s3://encode-public/2016/12/19/3a0bcd2b-7d55-4c57-98a1-33cf4dc6c37a/ENCFF754UIL.bam ENCODE3 hg19 archived low read length ENCFF623WHF bam bam alignments GRCh38 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF757POM/, /files/ENCFF805ZJS/, /files/ENCFF632EPK/, /files/ENCFF643CGH/, /files/ENCFF039VDX/ 1438077743 ENCODE Processing Pipeline eaa2c636cd66801908d03ff8ea6f8ded https://www.encodeproject.org/files/ENCFF623WHF/@@download/ENCFF623WHF.bam released s3://encode-public/2016/12/19/abd8661f-2c4f-404e-803c-2a0407752708/ENCFF623WHF.bam ENCODE3 GRCh38 archived low read length ENCFF318ZUP bam bam alignments hg19 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF757POM/, /files/ENCFF805ZJS/, /files/ENCFF632EPK/, /files/ENCFF039VDX/ 1438429181 ENCODE Processing Pipeline 5bff3c0c1d9da9b3168755211efa4087 https://www.encodeproject.org/files/ENCFF318ZUP/@@download/ENCFF318ZUP.bam released s3://encode-public/2016/12/19/b975cc66-c44f-4b92-9043-fea15eedffbc/ENCFF318ZUP.bam ENCODE3 hg19 archived low read length ENCFF380SNG tagAlign tagAlign alignments hg19 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF549YXP/, /files/ENCFF579OKU/ 239490726 Anshul Kundaje, Stanford e882f77916e08bd5fe82fc64a1ceaf09 https://www.encodeproject.org/files/ENCFF380SNG/@@download/ENCFF380SNG.tagAlign.gz archived s3://encode-public/2016/03/30/082f0c65-4001-434b-8753-4d7a90837b79/ENCFF380SNG.tagAlign.gz Lab custom hg19 archived low read length ENCFF231MLL bam bam redacted unfiltered alignments GRCh38 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF549YXP/, /files/ENCFF579OKU/ 702083103 ENCODE Processing Pipeline b12b21b224091b71333efef0c39d6130 https://www.encodeproject.org/files/ENCFF231MLL/@@download/ENCFF231MLL.bam released s3://encode-public/2018/01/19/3c5e67aa-2097-4102-ba8f-13f8d8e13a39/ENCFF231MLL.bam ENCODE3 GRCh38 archived low read length ENCFF304XVH bam bam redacted unfiltered alignments hg19 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF549YXP/, /files/ENCFF579OKU/ 695479430 ENCODE Processing Pipeline bcf3630bc241256cc7eaf56015fa548a https://www.encodeproject.org/files/ENCFF304XVH/@@download/ENCFF304XVH.bam released s3://encode-public/2018/01/19/90c3f5a7-318b-4413-b9b2-369b270e09bf/ENCFF304XVH.bam ENCODE3 hg19 archived low read length ENCFF949YMK bam bam redacted alignments hg19 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF549YXP/, /files/ENCFF579OKU/ 495636547 ENCODE Processing Pipeline 093d439286d5e5493ec47fa77624f9d2 https://www.encodeproject.org/files/ENCFF949YMK/@@download/ENCFF949YMK.bam released s3://encode-public/2018/01/19/32845955-79aa-4c62-af20-ef7a01a5c714/ENCFF949YMK.bam ENCODE3 hg19 archived low read length ENCFF209JDO bam bam redacted alignments GRCh38 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF549YXP/, /files/ENCFF579OKU/ 495609245 ENCODE Processing Pipeline e7f965efb460e4926951f42d60d7c545 https://www.encodeproject.org/files/ENCFF209JDO/@@download/ENCFF209JDO.bam released s3://encode-public/2018/01/19/c4ba0ff8-a39a-4ee6-b33e-ca7f07d47407/ENCFF209JDO.bam ENCODE3 GRCh38 archived low read length ENCFF326USP bam bam redacted alignments GRCh38 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF110MCL/, /files/ENCFF757POM/, /files/ENCFF632EPK/, /files/ENCFF039VDX/, /files/ENCFF805ZJS/ 1574137329 ENCODE Processing Pipeline cd53aa5fbef27f3b6854002752fc1c2c https://www.encodeproject.org/files/ENCFF326USP/@@download/ENCFF326USP.bam released s3://encode-public/2021/01/27/70dccbe9-dcb9-49ef-a3b0-cad2c87cea75/ENCFF326USP.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF560NSO bam bam redacted alignments GRCh38 ENCSR828DDP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000899 T-helper 17 cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF549YXP/, /files/ENCFF579OKU/ 1600153802 ENCODE Processing Pipeline a08a84a952ad3911b38c12134cf722fa https://www.encodeproject.org/files/ENCFF560NSO/@@download/ENCFF560NSO.bam released s3://encode-public/2021/01/27/a4272b41-c3e0-48e9-b146-1ae667c17053/ENCFF560NSO.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF613GVP fastq fastq reads ENCSR332NCE Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 138119703 Michael Snyder, Stanford 98905bc4e2cd1154ca369236f366e498 https://www.encodeproject.org/files/ENCFF613GVP/@@download/ENCFF613GVP.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/3a7adc56-3535-4604-a780-cf6774ee28a3/ENCFF613GVP.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF105GUP fastq fastq reads ENCSR332NCE Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 148238122 Kevin White, UChicago 10f0e053b1b33641efdc559d30dfe54b https://www.encodeproject.org/files/ENCFF105GUP/@@download/ENCFF105GUP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF467MSO/, /files/ENCFF530NCC/ archived s3://encode-public/2016/10/25/7c7bd3dc-9e48-4bae-b73e-0054d6bc28e3/ENCFF105GUP.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF753PFI fastq fastq reads ENCSR950VOB Control ChIP-seq /fly-donors/ENCDO984YCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37978/'], '@type': ['Target', 'Item'], 'name': 'Atf-2-dmelanogaster', 'label': 'Atf-2', '@id': '/targets/Atf-2-dmelanogaster/', 'title': 'Atf-2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e6a4cfa5-d412-47c2-b9b3-f8dbc416a586', 'status': 'released'} dm3 2R 20676270 20774373 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 926988193 Kevin White, UChicago 18998fe312e2f3970b0a3bd3b69d0b0f https://www.encodeproject.org/files/ENCFF753PFI/@@download/ENCFF753PFI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/edf9a385-feb3-40cd-b3ee-410efe53dab7/ENCFF753PFI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF226UNJ bam bam alignments dm3 ENCSR950VOB Control ChIP-seq /fly-donors/ENCDO984YCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37978/'], '@type': ['Target', 'Item'], 'name': 'Atf-2-dmelanogaster', 'label': 'Atf-2', '@id': '/targets/Atf-2-dmelanogaster/', 'title': 'Atf-2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e6a4cfa5-d412-47c2-b9b3-f8dbc416a586', 'status': 'released'} dm3 2R 20676270 20774373 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF753PFI/ 1335889364 Kevin White, UChicago e554a50b04a0cfc84b4dfc2053002390 https://www.encodeproject.org/files/ENCFF226UNJ/@@download/ENCFF226UNJ.bam released s3://encode-public/2015/08/03/ecb63d5a-b905-4d5d-8ce1-15248cd83807/ENCFF226UNJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF387JIC bigWig bigWig read-depth normalized signal dm3 ENCSR950VOB Control ChIP-seq /fly-donors/ENCDO984YCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37978/'], '@type': ['Target', 'Item'], 'name': 'Atf-2-dmelanogaster', 'label': 'Atf-2', '@id': '/targets/Atf-2-dmelanogaster/', 'title': 'Atf-2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e6a4cfa5-d412-47c2-b9b3-f8dbc416a586', 'status': 'released'} dm3 2R 20676270 20774373 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF226UNJ/ 15456484 Kevin White, UChicago bdb271449239af23084eeabeba8d8b0a https://www.encodeproject.org/files/ENCFF387JIC/@@download/ENCFF387JIC.bigWig released s3://encode-public/2015/10/05/f0119fe7-6003-4328-999b-d4c5018f330f/ENCFF387JIC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF699MKT bigWig bigWig signal of unique reads dm3 ENCSR950VOB Control ChIP-seq /fly-donors/ENCDO984YCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37978/'], '@type': ['Target', 'Item'], 'name': 'Atf-2-dmelanogaster', 'label': 'Atf-2', '@id': '/targets/Atf-2-dmelanogaster/', 'title': 'Atf-2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e6a4cfa5-d412-47c2-b9b3-f8dbc416a586', 'status': 'released'} dm3 2R 20676270 20774373 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF226UNJ/ 15422211 Kevin White, UChicago a092dd59af10e68db4d1d5249202ecdf https://www.encodeproject.org/files/ENCFF699MKT/@@download/ENCFF699MKT.bigWig released s3://encode-public/2015/10/05/627342af-7279-4327-b4c3-e77257b705bc/ENCFF699MKT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF119OXJ bam bam alignments dm6 ENCSR950VOB Control ChIP-seq /fly-donors/ENCDO984YCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37978/'], '@type': ['Target', 'Item'], 'name': 'Atf-2-dmelanogaster', 'label': 'Atf-2', '@id': '/targets/Atf-2-dmelanogaster/', 'title': 'Atf-2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e6a4cfa5-d412-47c2-b9b3-f8dbc416a586', 'status': 'released'} dm3 2R 20676270 20774373 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF753PFI/ 1331032968 Kevin White, UChicago 88858ebc18d448ae9f38cd4e1b5280cf https://www.encodeproject.org/files/ENCFF119OXJ/@@download/ENCFF119OXJ.bam released s3://encode-public/2016/04/20/25afd6af-bf0f-44c3-946c-ba2416c85313/ENCFF119OXJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF797JWG bigWig bigWig read-depth normalized signal dm6 ENCSR950VOB Control ChIP-seq /fly-donors/ENCDO984YCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37978/'], '@type': ['Target', 'Item'], 'name': 'Atf-2-dmelanogaster', 'label': 'Atf-2', '@id': '/targets/Atf-2-dmelanogaster/', 'title': 'Atf-2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e6a4cfa5-d412-47c2-b9b3-f8dbc416a586', 'status': 'released'} dm3 2R 20676270 20774373 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF119OXJ/ 17507727 Kevin White, UChicago e9dc6bde54fd7744d33b6024756beb54 https://www.encodeproject.org/files/ENCFF797JWG/@@download/ENCFF797JWG.bigWig released s3://encode-public/2016/06/20/02309a20-4d99-49bb-970c-41aa0da8756c/ENCFF797JWG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF167TPX bigWig bigWig signal of unique reads dm6 ENCSR950VOB Control ChIP-seq /fly-donors/ENCDO984YCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37978/'], '@type': ['Target', 'Item'], 'name': 'Atf-2-dmelanogaster', 'label': 'Atf-2', '@id': '/targets/Atf-2-dmelanogaster/', 'title': 'Atf-2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e6a4cfa5-d412-47c2-b9b3-f8dbc416a586', 'status': 'released'} dm3 2R 20676270 20774373 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF119OXJ/ 17454147 Kevin White, UChicago 7c307cb99bb6ecaf4afd1deffa873e25 https://www.encodeproject.org/files/ENCFF167TPX/@@download/ENCFF167TPX.bigWig released s3://encode-public/2016/06/20/b5870292-abef-4a67-adb6-4588f19b443e/ENCFF167TPX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF798MRO fastq fastq reads ENCSR890SJI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1105858611 Richard Myers, HAIB a6d6e14e912ba7dd0d792680b14ecf74 SRA:SRR5112226 https://www.encodeproject.org/files/ENCFF798MRO/@@download/ENCFF798MRO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/a7e0157d-bf56-481e-bde7-90c9841fc9d6/ENCFF798MRO.fastq.gz ENCFF237MGW bam bam unfiltered alignments mm10 ENCSR890SJI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF798MRO/ 1221359283 ENCODE Processing Pipeline 4e1fefe9a80e57e3b7ff2377eeddc6fe https://www.encodeproject.org/files/ENCFF237MGW/@@download/ENCFF237MGW.bam released s3://encode-public/2016/05/20/b5e0e279-5829-4a58-b057-d0062cb2f663/ENCFF237MGW.bam ENCODE3 mm10 archived ENCFF365VOZ bam bam alignments mm10 ENCSR890SJI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF798MRO/ 920901870 ENCODE Processing Pipeline 494e210b80abd851820efadb5c9db603 https://www.encodeproject.org/files/ENCFF365VOZ/@@download/ENCFF365VOZ.bam released s3://encode-public/2016/05/20/0792c896-e552-427c-bc96-b5f5db4da9cb/ENCFF365VOZ.bam ENCODE3 mm10 archived ENCFF927VZI bam bam unfiltered alignments mm10 ENCSR890SJI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF798MRO/, /files/ENCFF309GLL/ 1200717326 ENCODE Processing Pipeline 1596164d206ef20885f46aad8b109742 https://www.encodeproject.org/files/ENCFF927VZI/@@download/ENCFF927VZI.bam released s3://encode-public/2020/11/06/a395dbdd-779d-45c9-97c3-e005a97001c5/ENCFF927VZI.bam ENCODE4 v1.6.1 mm10 released ENCFF069KMY bam bam alignments mm10 ENCSR890SJI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF798MRO/, /files/ENCFF309GLL/ 943595678 ENCODE Processing Pipeline 1da47d96b6d66aab605428874ee613cc https://www.encodeproject.org/files/ENCFF069KMY/@@download/ENCFF069KMY.bam released s3://encode-public/2020/11/06/adce7af4-4184-47af-816a-843e862299d6/ENCFF069KMY.bam ENCODE4 v1.6.1 mm10 released ENCFF559ZYU fastq fastq reads ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 155612731 Michael Snyder, Stanford 825d5663acaafc38c4a5fc7cfafc45b4 https://www.encodeproject.org/files/ENCFF559ZYU/@@download/ENCFF559ZYU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8560d59b-30a0-4b2e-ae22-c543709be507/ENCFF559ZYU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF787IXA fastq fastq reads ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 168413331 Michael Snyder, Stanford 28d2dfe95d506668dc1d5912263df040 https://www.encodeproject.org/files/ENCFF787IXA/@@download/ENCFF787IXA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4ac171bf-fad6-4675-985b-cde7c1bb9c93/ENCFF787IXA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF497LPP bam bam alignments ce10 ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF559ZYU/, /files/ENCFF787IXA/, /files/ENCFF987UMF/ 349612710 Kevin White, UChicago 373561596fc6de0ef1821658f84bd9c7 https://www.encodeproject.org/files/ENCFF497LPP/@@download/ENCFF497LPP.bam released s3://encode-public/2016/10/18/5115bcc9-5459-4280-8940-6ba7673ad338/ENCFF497LPP.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF660KHE bam bam alignments ce11 ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF559ZYU/, /files/ENCFF787IXA/, /files/ENCFF586MOL/ 349853827 Kevin White, UChicago c587bd1c1718816038d7a3d71fa7c3ac https://www.encodeproject.org/files/ENCFF660KHE/@@download/ENCFF660KHE.bam released s3://encode-public/2016/10/18/af18b2c7-88af-494a-b068-62b3d1c58131/ENCFF660KHE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF146CAR bigWig bigWig read-depth normalized signal ce10 ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF497LPP/ 10043698 Kevin White, UChicago a90a3aafaeb41a11e62dd0a861e2f5c5 https://www.encodeproject.org/files/ENCFF146CAR/@@download/ENCFF146CAR.bigWig released s3://encode-public/2016/10/20/407d49c9-3bd9-4b77-9d5d-3ba28459f78e/ENCFF146CAR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF025AMO bigWig bigWig signal of unique reads ce10 ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF497LPP/ 9981447 Kevin White, UChicago a31413c6ee91913cb39df8ace8c08c27 https://www.encodeproject.org/files/ENCFF025AMO/@@download/ENCFF025AMO.bigWig released s3://encode-public/2016/10/20/067914fa-5969-4392-8bb5-a7639f9ab0ef/ENCFF025AMO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF475DUH bigWig bigWig read-depth normalized signal ce11 ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF660KHE/ 10041291 Kevin White, UChicago a90e3d7870b595c17542c738b1337064 https://www.encodeproject.org/files/ENCFF475DUH/@@download/ENCFF475DUH.bigWig released s3://encode-public/2016/10/20/dabc6655-2fbc-4a67-9bf1-7c01c3daa17e/ENCFF475DUH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF731LSM bigWig bigWig signal of unique reads ce11 ENCSR903ZHS Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF660KHE/ 9982842 Kevin White, UChicago 731a07ac6459916d5ab591273833dc3b https://www.encodeproject.org/files/ENCFF731LSM/@@download/ENCFF731LSM.bigWig released s3://encode-public/2016/10/20/313e42dc-7ea6-4dcf-8fa8-5039a763a4f5/ENCFF731LSM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF963ULK fastq fastq reads ENCSR166BOY Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-03-12 modENCODE >200 1 1_1 44 single-ended 839903604 Kevin White, UChicago 9d072126da1ba3d9145cc10edde7beee https://www.encodeproject.org/files/ENCFF963ULK/@@download/ENCFF963ULK.fastq.gz Illumina Genome Analyzer /files/ENCFF339NVG/ released s3://encode-public/2017/12/22/71f5f18e-f401-4f3a-ac1d-b0281aa8f07d/ENCFF963ULK.fastq.gz ENCFF207PAC bam bam alignments dm3 ENCSR166BOY Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-03-12 modENCODE >200 1 1_1 44 /files/ENCFF963ULK/, /files/ENCFF059UHX/ 1065064507 Kevin White, UChicago fd1fcfe349cba27a6b1602732d58353f https://www.encodeproject.org/files/ENCFF207PAC/@@download/ENCFF207PAC.bam released s3://encode-public/2017/12/22/04b2bf8d-a16d-440f-9791-3c3a74b91373/ENCFF207PAC.bam Lab custom dm3 archived ENCFF172BBO bam bam alignments dm6 ENCSR166BOY Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-03-12 modENCODE >200 1 1_1 44 /files/ENCFF963ULK/, /files/ENCFF479RCH/ 1059409707 Kevin White, UChicago 6dc11b7c79944bdfb3eee0f2bbd015ca https://www.encodeproject.org/files/ENCFF172BBO/@@download/ENCFF172BBO.bam released s3://encode-public/2017/12/24/50df43cc-662d-4628-bdfc-8a30249bc1d2/ENCFF172BBO.bam Lab custom dm6 released ENCFF449QWW bigWig bigWig signal of unique reads dm3 ENCSR166BOY Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-03-12 modENCODE >200 1 1_1 /files/ENCFF207PAC/ 15621934 Kevin White, UChicago f92e4b35fc749d454f2b88ce61d1a676 https://www.encodeproject.org/files/ENCFF449QWW/@@download/ENCFF449QWW.bigWig released s3://encode-public/2017/12/24/8dfa5576-0dae-4c36-98eb-d7bb79bd11db/ENCFF449QWW.bigWig Lab custom dm3 archived ENCFF494NQK bigWig bigWig read-depth normalized signal dm3 ENCSR166BOY Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-03-12 modENCODE >200 1 1_1 /files/ENCFF207PAC/ 15615708 Kevin White, UChicago d61d2f886109bbb95bd3d183939b59e6 https://www.encodeproject.org/files/ENCFF494NQK/@@download/ENCFF494NQK.bigWig released s3://encode-public/2017/12/24/c3739073-2395-4c34-8ff7-2f1652970802/ENCFF494NQK.bigWig Lab custom dm3 archived ENCFF088GKD bigWig bigWig signal of unique reads dm6 ENCSR166BOY Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-03-12 modENCODE >200 1 1_1 /files/ENCFF172BBO/ 17699853 Kevin White, UChicago 9dd7f208b4d99ac3fdbbd77b9360ce73 https://www.encodeproject.org/files/ENCFF088GKD/@@download/ENCFF088GKD.bigWig released s3://encode-public/2017/12/24/62e1e09d-04c4-4db7-a43a-1d4c382913d0/ENCFF088GKD.bigWig Lab custom dm6 released ENCFF392AZB bigWig bigWig read-depth normalized signal dm6 ENCSR166BOY Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-03-12 modENCODE >200 1 1_1 /files/ENCFF172BBO/ 17683962 Kevin White, UChicago 9a2ecd0f9fdeaa9123044a8b550544c6 https://www.encodeproject.org/files/ENCFF392AZB/@@download/ENCFF392AZB.bigWig released s3://encode-public/2017/12/24/fbd42a3d-41f3-4246-8329-cdbfb270a6a5/ENCFF392AZB.bigWig Lab custom dm6 released ENCFF299JNL fastq fastq reads ENCSR014GMV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-09 ENCODE sonication (generic) 1 1_1 50 single-ended 1397468210 Richard Myers, HAIB 8407312291d9cccd103bf6aacd514e31 SRA:SRR5112436 https://www.encodeproject.org/files/ENCFF299JNL/@@download/ENCFF299JNL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/12/05/8cf367bb-bd73-4a33-9764-7a775618bce7/ENCFF299JNL.fastq.gz ENCFF280ERM bam bam unfiltered alignments mm10 ENCSR014GMV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-09 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF299JNL/ 1547388740 ENCODE Processing Pipeline 74381b2edb8e152f223623532268e8c7 https://www.encodeproject.org/files/ENCFF280ERM/@@download/ENCFF280ERM.bam released s3://encode-public/2016/05/20/ccbcf679-d708-4ca6-8069-f0615a9b81a1/ENCFF280ERM.bam ENCODE3 mm10 archived ENCFF431RNJ bam bam alignments mm10 ENCSR014GMV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-09 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF299JNL/ 1135888339 ENCODE Processing Pipeline 4a09cfd6d6ad06a67bc386330af9266c https://www.encodeproject.org/files/ENCFF431RNJ/@@download/ENCFF431RNJ.bam released s3://encode-public/2016/05/20/502b08a1-1716-4a5c-9609-792fe4d499c1/ENCFF431RNJ.bam ENCODE3 mm10 archived ENCFF130IIX bam bam unfiltered alignments mm10 ENCSR014GMV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-09 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF299JNL/ 1534796391 ENCODE Processing Pipeline e5ce5c676a772d7e7edfaf004ce597bf https://www.encodeproject.org/files/ENCFF130IIX/@@download/ENCFF130IIX.bam released s3://encode-public/2020/10/08/e3a6bb1d-4397-4e6d-b57d-fe4f49dc1c84/ENCFF130IIX.bam ENCODE4 v1.5.1 mm10 released ENCFF429OCX bam bam alignments mm10 ENCSR014GMV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-09 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF299JNL/ 1175798557 ENCODE Processing Pipeline a43b9ed580ecec380dbe6616042a1970 https://www.encodeproject.org/files/ENCFF429OCX/@@download/ENCFF429OCX.bam released s3://encode-public/2020/10/08/ec41430a-bfc8-4379-ab77-3fba1f7d2ca5/ENCFF429OCX.bam ENCODE4 v1.5.1 mm10 released ENCFF036FTY fastq fastq reads ENCSR646YCH Control ChIP-seq /worm-donors/ENCDO327FAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181529/'], '@type': ['Target', 'Item'], 'name': 'ceh-36-celegans', 'label': 'ceh-36', '@id': '/targets/ceh-36-celegans/', 'title': 'ceh-36 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '06992983-41e9-445f-8fae-c103dd94c446', 'status': 'released'} ce11 X 14172586 14207236 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 805480350 Kevin White, UChicago 9def3e1a67703a2dd40c65aaec80f570 https://www.encodeproject.org/files/ENCFF036FTY/@@download/ENCFF036FTY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/04/0ddb5bce-d9b1-4a0c-b1bd-bf068a12f452/ENCFF036FTY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF191BQL bam bam alignments ce10 ENCSR646YCH Control ChIP-seq /worm-donors/ENCDO327FAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181529/'], '@type': ['Target', 'Item'], 'name': 'ceh-36-celegans', 'label': 'ceh-36', '@id': '/targets/ceh-36-celegans/', 'title': 'ceh-36 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '06992983-41e9-445f-8fae-c103dd94c446', 'status': 'released'} ce11 X 14172586 14207236 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF036FTY/, /files/ENCFF987UMF/ 967935126 Kevin White, UChicago 82883f5fb0da087a935857d96a2ff28b https://www.encodeproject.org/files/ENCFF191BQL/@@download/ENCFF191BQL.bam released s3://encode-public/2016/10/04/9eb34d49-ed90-4cad-bb93-d2b2970ef933/ENCFF191BQL.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF078KCS bam bam alignments ce11 ENCSR646YCH Control ChIP-seq /worm-donors/ENCDO327FAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181529/'], '@type': ['Target', 'Item'], 'name': 'ceh-36-celegans', 'label': 'ceh-36', '@id': '/targets/ceh-36-celegans/', 'title': 'ceh-36 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '06992983-41e9-445f-8fae-c103dd94c446', 'status': 'released'} ce11 X 14172586 14207236 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF036FTY/, /files/ENCFF586MOL/ 968925088 Kevin White, UChicago 1e26dea78f10189e69f213022783de11 https://www.encodeproject.org/files/ENCFF078KCS/@@download/ENCFF078KCS.bam released s3://encode-public/2016/10/05/c20443b1-4352-467c-b1d8-60c3bb6fc65d/ENCFF078KCS.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF429BZZ bigWig bigWig signal of unique reads ce10 ENCSR646YCH Control ChIP-seq /worm-donors/ENCDO327FAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181529/'], '@type': ['Target', 'Item'], 'name': 'ceh-36-celegans', 'label': 'ceh-36', '@id': '/targets/ceh-36-celegans/', 'title': 'ceh-36 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '06992983-41e9-445f-8fae-c103dd94c446', 'status': 'released'} ce11 X 14172586 14207236 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF191BQL/ 9925543 Kevin White, UChicago 26f8578a1933f9d0378a67446bcafb23 https://www.encodeproject.org/files/ENCFF429BZZ/@@download/ENCFF429BZZ.bigWig released s3://encode-public/2016/10/06/067340d7-0f78-4747-ba26-4917cede2943/ENCFF429BZZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF461UBA bigWig bigWig read-depth normalized signal ce10 ENCSR646YCH Control ChIP-seq /worm-donors/ENCDO327FAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181529/'], '@type': ['Target', 'Item'], 'name': 'ceh-36-celegans', 'label': 'ceh-36', '@id': '/targets/ceh-36-celegans/', 'title': 'ceh-36 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '06992983-41e9-445f-8fae-c103dd94c446', 'status': 'released'} ce11 X 14172586 14207236 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF191BQL/ 9922859 Kevin White, UChicago 521658553a34a7bf32b8935d97e321f5 https://www.encodeproject.org/files/ENCFF461UBA/@@download/ENCFF461UBA.bigWig released s3://encode-public/2016/10/06/4a770ec2-9b41-4005-b93f-3eb7e12f7af9/ENCFF461UBA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF607EVS bigWig bigWig signal of unique reads ce11 ENCSR646YCH Control ChIP-seq /worm-donors/ENCDO327FAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181529/'], '@type': ['Target', 'Item'], 'name': 'ceh-36-celegans', 'label': 'ceh-36', '@id': '/targets/ceh-36-celegans/', 'title': 'ceh-36 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '06992983-41e9-445f-8fae-c103dd94c446', 'status': 'released'} ce11 X 14172586 14207236 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF078KCS/ 9925545 Kevin White, UChicago d0c394ab4f21ebac9c16af5e1b98435b https://www.encodeproject.org/files/ENCFF607EVS/@@download/ENCFF607EVS.bigWig released s3://encode-public/2016/10/06/1c49f742-5159-4bc5-aba8-065eeed2fc39/ENCFF607EVS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF579RDO bigWig bigWig read-depth normalized signal ce11 ENCSR646YCH Control ChIP-seq /worm-donors/ENCDO327FAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181529/'], '@type': ['Target', 'Item'], 'name': 'ceh-36-celegans', 'label': 'ceh-36', '@id': '/targets/ceh-36-celegans/', 'title': 'ceh-36 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '06992983-41e9-445f-8fae-c103dd94c446', 'status': 'released'} ce11 X 14172586 14207236 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF078KCS/ 9922857 Kevin White, UChicago 0c7a67df4e6d8d5063aef6920ea187b2 https://www.encodeproject.org/files/ENCFF579RDO/@@download/ENCFF579RDO.bigWig released s3://encode-public/2016/10/06/5f76785c-5195-4425-9b49-6b5f752aab0b/ENCFF579RDO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF422NNM fastq fastq reads ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 237164872 Michael Snyder, Stanford 2f80df1f462897e53447b02a0ca2c862 https://www.encodeproject.org/files/ENCFF422NNM/@@download/ENCFF422NNM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/137edd61-1eb5-45f7-a0f6-1622b097ba9b/ENCFF422NNM.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF170WMF fastq fastq reads ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 229745970 Michael Snyder, Stanford 56e841efda69b87b178f72703f31d1f0 https://www.encodeproject.org/files/ENCFF170WMF/@@download/ENCFF170WMF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/f034403f-f8a3-4dd3-9fd0-7075a419a5d3/ENCFF170WMF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF470RQF bam bam alignments ce10 ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF170WMF/, /files/ENCFF422NNM/, /files/ENCFF987UMF/ 605210433 Kevin White, UChicago ade2604d45c4a3b2d2c68d23275c7ff9 https://www.encodeproject.org/files/ENCFF470RQF/@@download/ENCFF470RQF.bam released s3://encode-public/2016/10/18/f05fb3f8-9c60-48f0-877f-a71bcad501ac/ENCFF470RQF.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF935NYF bam bam alignments ce11 ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF170WMF/, /files/ENCFF422NNM/, /files/ENCFF586MOL/ 605837039 Kevin White, UChicago 41a071695b1870a2be4088d153ff9396 https://www.encodeproject.org/files/ENCFF935NYF/@@download/ENCFF935NYF.bam released s3://encode-public/2016/10/19/b5975056-5ac2-4feb-a6d5-98a60e4868d3/ENCFF935NYF.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF154NRA bigWig bigWig read-depth normalized signal ce10 ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF470RQF/ 10021716 Kevin White, UChicago aa3e606aa2c670d2719156d84499185e https://www.encodeproject.org/files/ENCFF154NRA/@@download/ENCFF154NRA.bigWig released s3://encode-public/2016/10/20/70463540-bac6-4ba2-a141-f941ce024772/ENCFF154NRA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF650HEK bigWig bigWig signal of unique reads ce10 ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF470RQF/ 9995593 Kevin White, UChicago c4466aa799dafa620681f4b675e88941 https://www.encodeproject.org/files/ENCFF650HEK/@@download/ENCFF650HEK.bigWig released s3://encode-public/2016/10/20/3f742734-b9f5-40de-9840-017c542e949f/ENCFF650HEK.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF639JJU bigWig bigWig signal of unique reads ce11 ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF935NYF/ 9992047 Kevin White, UChicago 80db64b7a8dd0de50f3617cfc7f44223 https://www.encodeproject.org/files/ENCFF639JJU/@@download/ENCFF639JJU.bigWig released s3://encode-public/2016/10/21/6e154df0-5b84-4d12-9a5d-69fae8934f16/ENCFF639JJU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF601SSU bigWig bigWig read-depth normalized signal ce11 ENCSR195VRA Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF935NYF/ 10032089 Kevin White, UChicago a114699fe868a9f319581386d206b99b https://www.encodeproject.org/files/ENCFF601SSU/@@download/ENCFF601SSU.bigWig released s3://encode-public/2016/10/21/784f5a38-5026-467d-b02d-5b519312d8e6/ENCFF601SSU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF231XNM fastq fastq reads ENCSR355TQJ Control ChIP-seq /fly-donors/ENCDO961KMK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35974/'], '@type': ['Target', 'Item'], 'name': 'Camta-dmelanogaster', 'label': 'Camta', '@id': '/targets/Camta-dmelanogaster/', 'title': 'Camta (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eaa3a01d-61de-4ce7-b089-a3507d15819e', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 854199819 Kevin White, UChicago 2baa1853e7f5bb91ec8d76fd18e6e16f https://www.encodeproject.org/files/ENCFF231XNM/@@download/ENCFF231XNM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/fb991858-e45f-473d-8af1-30c9821d7525/ENCFF231XNM.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF742WYI bam bam alignments dm3 ENCSR355TQJ Control ChIP-seq /fly-donors/ENCDO961KMK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35974/'], '@type': ['Target', 'Item'], 'name': 'Camta-dmelanogaster', 'label': 'Camta', '@id': '/targets/Camta-dmelanogaster/', 'title': 'Camta (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eaa3a01d-61de-4ce7-b089-a3507d15819e', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF231XNM/ 1228135965 Kevin White, UChicago 91a78750c4578fb0c369c9cc655ff92f https://www.encodeproject.org/files/ENCFF742WYI/@@download/ENCFF742WYI.bam released s3://encode-public/2015/08/03/bf8b4db5-e7b9-4ed2-b28b-21ee09241940/ENCFF742WYI.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF565YBN bigWig bigWig read-depth normalized signal dm3 ENCSR355TQJ Control ChIP-seq /fly-donors/ENCDO961KMK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35974/'], '@type': ['Target', 'Item'], 'name': 'Camta-dmelanogaster', 'label': 'Camta', '@id': '/targets/Camta-dmelanogaster/', 'title': 'Camta (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eaa3a01d-61de-4ce7-b089-a3507d15819e', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF742WYI/ 15408617 Kevin White, UChicago 0a5f7534607ca00ed94fa90ad94933cb https://www.encodeproject.org/files/ENCFF565YBN/@@download/ENCFF565YBN.bigWig released s3://encode-public/2015/10/05/18e14b44-3f16-4bac-977a-136b719edb55/ENCFF565YBN.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF361LQT bigWig bigWig signal of unique reads dm3 ENCSR355TQJ Control ChIP-seq /fly-donors/ENCDO961KMK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35974/'], '@type': ['Target', 'Item'], 'name': 'Camta-dmelanogaster', 'label': 'Camta', '@id': '/targets/Camta-dmelanogaster/', 'title': 'Camta (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eaa3a01d-61de-4ce7-b089-a3507d15819e', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF742WYI/ 15393705 Kevin White, UChicago 90970492f31969cf5a8221e64234610d https://www.encodeproject.org/files/ENCFF361LQT/@@download/ENCFF361LQT.bigWig released s3://encode-public/2015/10/05/d46a8f11-70fd-43a4-996e-e580f9b735e8/ENCFF361LQT.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF129IHI bam bam alignments dm6 ENCSR355TQJ Control ChIP-seq /fly-donors/ENCDO961KMK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35974/'], '@type': ['Target', 'Item'], 'name': 'Camta-dmelanogaster', 'label': 'Camta', '@id': '/targets/Camta-dmelanogaster/', 'title': 'Camta (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eaa3a01d-61de-4ce7-b089-a3507d15819e', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF231XNM/ 1221169478 Kevin White, UChicago ad544d50afcae7fd7ea50e2151499e03 https://www.encodeproject.org/files/ENCFF129IHI/@@download/ENCFF129IHI.bam released s3://encode-public/2016/04/20/aad800b6-3107-483f-b7a8-534d61f03840/ENCFF129IHI.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF534KRP bigWig bigWig signal of unique reads dm6 ENCSR355TQJ Control ChIP-seq /fly-donors/ENCDO961KMK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35974/'], '@type': ['Target', 'Item'], 'name': 'Camta-dmelanogaster', 'label': 'Camta', '@id': '/targets/Camta-dmelanogaster/', 'title': 'Camta (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eaa3a01d-61de-4ce7-b089-a3507d15819e', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF129IHI/ 17459071 Kevin White, UChicago 7b62b23c56e3871836c93911b511ae85 https://www.encodeproject.org/files/ENCFF534KRP/@@download/ENCFF534KRP.bigWig released s3://encode-public/2016/06/21/45973fef-774a-4628-9549-aac4d551b477/ENCFF534KRP.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF716CJJ bigWig bigWig read-depth normalized signal dm6 ENCSR355TQJ Control ChIP-seq /fly-donors/ENCDO961KMK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35974/'], '@type': ['Target', 'Item'], 'name': 'Camta-dmelanogaster', 'label': 'Camta', '@id': '/targets/Camta-dmelanogaster/', 'title': 'Camta (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eaa3a01d-61de-4ce7-b089-a3507d15819e', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF129IHI/ 17479601 Kevin White, UChicago 84ca9e13f7008eeded47ad8ad9529e87 https://www.encodeproject.org/files/ENCFF716CJJ/@@download/ENCFF716CJJ.bigWig released s3://encode-public/2016/06/21/4e99dbdf-e494-453c-a0f7-6ebd577b3090/ENCFF716CJJ.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF632GEO fastq fastq reads ENCSR711IHB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1302024606 Kevin White, UChicago 13bae6334ef174bf0e1aef3f5a9a4c76 https://www.encodeproject.org/files/ENCFF632GEO/@@download/ENCFF632GEO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/23/b0b61de9-d238-4230-b4b6-3b97d10fa170/ENCFF632GEO.fastq.gz ENCFF306ZFT bam bam alignments dm3 ENCSR711IHB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF632GEO/ 1635364945 Kevin White, UChicago c67850b30bbf5d8ab532203abffc64e1 https://www.encodeproject.org/files/ENCFF306ZFT/@@download/ENCFF306ZFT.bam released s3://encode-public/2017/06/19/ece196da-209c-46e4-a9c5-4340b7d20d2d/ENCFF306ZFT.bam Lab custom dm3 archived ENCFF313KVG bam bam alignments dm6 ENCSR711IHB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF632GEO/ 1627214257 Kevin White, UChicago 7bab16f7bebe2e989eb5de7042872d05 https://www.encodeproject.org/files/ENCFF313KVG/@@download/ENCFF313KVG.bam released s3://encode-public/2017/06/28/214bbd56-19f3-4e10-8814-d42d903c1c48/ENCFF313KVG.bam Lab custom dm6 released ENCFF339TFZ bigWig bigWig signal of unique reads dm3 ENCSR711IHB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF306ZFT/ 15700981 Kevin White, UChicago ae9587bab399f943f8f443b5b4faeaed https://www.encodeproject.org/files/ENCFF339TFZ/@@download/ENCFF339TFZ.bigWig released s3://encode-public/2017/06/29/b9397245-8126-4286-844c-e3f0d8361a71/ENCFF339TFZ.bigWig Lab custom dm3 archived ENCFF646EIU bigWig bigWig read-depth normalized signal dm3 ENCSR711IHB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF306ZFT/ 15715436 Kevin White, UChicago c059bcc1e3b2e14186c6190c5c36a60f https://www.encodeproject.org/files/ENCFF646EIU/@@download/ENCFF646EIU.bigWig released s3://encode-public/2017/06/29/ec03380c-d658-4e53-a2d5-563c574b1642/ENCFF646EIU.bigWig Lab custom dm3 archived ENCFF789CRR bigWig bigWig read-depth normalized signal dm6 ENCSR711IHB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF313KVG/ 17800587 Kevin White, UChicago 70966abcdbc25f7e247f83f08b92ff42 https://www.encodeproject.org/files/ENCFF789CRR/@@download/ENCFF789CRR.bigWig released s3://encode-public/2017/06/30/4dc7178f-5ec1-45dc-a9d0-07c8c4515bfb/ENCFF789CRR.bigWig Lab custom dm6 released ENCFF515JWB bigWig bigWig signal of unique reads dm6 ENCSR711IHB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF313KVG/ 17767375 Kevin White, UChicago 5dda70fe6777cba2963692ae8c4d8f1a https://www.encodeproject.org/files/ENCFF515JWB/@@download/ENCFF515JWB.bigWig released s3://encode-public/2017/06/30/29356f63-5246-4996-9f36-3c85bb835d2d/ENCFF515JWB.bigWig Lab custom dm6 released ENCFF456EMT bam bam unfiltered alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF649OIW/ 859901553 ENCODE Processing Pipeline ab6c71db2a817c5954784581603e0baf https://www.encodeproject.org/files/ENCFF456EMT/@@download/ENCFF456EMT.bam released s3://encode-public/2020/09/29/37ba03c8-5fef-46e5-bbd2-9fba58a503d5/ENCFF456EMT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF572ZEF fastq fastq reads ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 547670039 Tim Reddy, Duke 73c7129d384d7a43548b3d2388e045cb SRA:SRR5093404 https://www.encodeproject.org/files/ENCFF572ZEF/@@download/ENCFF572ZEF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/99dc5175-c4cb-4c28-9685-b0d687f71ab8/ENCFF572ZEF.fastq.gz ENCFF689LDK fastq fastq reads ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 764894744 Tim Reddy, Duke 6264ca2e85cd673de1d27f1949c12048 SRA:SRR5093405 https://www.encodeproject.org/files/ENCFF689LDK/@@download/ENCFF689LDK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/4c62c469-059d-4a59-b125-921620714d4a/ENCFF689LDK.fastq.gz ENCFF649OIW fastq fastq reads ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 730034385 Tim Reddy, Duke 61d9a56ee9517c23d17f779393fdefbf SRA:SRR5093403 https://www.encodeproject.org/files/ENCFF649OIW/@@download/ENCFF649OIW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/b0841437-cdeb-44ba-9a06-a0fd02e00af2/ENCFF649OIW.fastq.gz ENCFF940WFM bam bam alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF649OIW/ 584862872 Tim Reddy, Duke b0b17db23e93f69b8045e7bc75a3ed6e https://www.encodeproject.org/files/ENCFF940WFM/@@download/ENCFF940WFM.bam released s3://encode-public/2016/05/31/99c3580a-1e03-41ba-9674-89fdd5ba73f2/ENCFF940WFM.bam Lab custom GRCh38 archived ENCFF293SHQ bam bam alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF572ZEF/ 594781835 Tim Reddy, Duke 0c44d3ab8efc05493e5b767d2852ff61 https://www.encodeproject.org/files/ENCFF293SHQ/@@download/ENCFF293SHQ.bam released s3://encode-public/2016/05/31/179550d6-9546-4b2a-87a7-e071149f871f/ENCFF293SHQ.bam Lab custom GRCh38 archived ENCFF497VSZ bam bam alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF689LDK/ 776815845 Tim Reddy, Duke 872597e7f87e59e448baa087fc0a4e66 https://www.encodeproject.org/files/ENCFF497VSZ/@@download/ENCFF497VSZ.bam released s3://encode-public/2016/05/31/0a310681-40d5-47bc-87cf-76fad704b537/ENCFF497VSZ.bam Lab custom GRCh38 archived ENCFF854XWD bam bam unfiltered alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF689LDK/, /files/ENCFF110MCL/ 1009990032 ENCODE Processing Pipeline 348ad739bebf394a3f48f01cbe9a8e83 https://www.encodeproject.org/files/ENCFF854XWD/@@download/ENCFF854XWD.bam released s3://encode-public/2020/09/29/6b8abf77-64fb-4f53-8b7f-32a14003bfb0/ENCFF854XWD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF105PEP bam bam alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF649OIW/ 613746515 ENCODE Processing Pipeline 2560a7eff800a68255f4bf8ffaab0720 https://www.encodeproject.org/files/ENCFF105PEP/@@download/ENCFF105PEP.bam released s3://encode-public/2020/09/29/81994d6b-43b1-43cf-ae80-b218089c815b/ENCFF105PEP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF462MUE bam bam unfiltered alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF572ZEF/ 737218860 ENCODE Processing Pipeline 2c4d35ea9072b9eb2a6a14c338207f27 https://www.encodeproject.org/files/ENCFF462MUE/@@download/ENCFF462MUE.bam released s3://encode-public/2020/09/29/4158ae95-9030-4627-8f9f-2b0bad8b00ea/ENCFF462MUE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF448FLI bam bam alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF689LDK/, /files/ENCFF110MCL/ 813481471 ENCODE Processing Pipeline dd42b5910e8fe16e7fbfb1b32368f155 https://www.encodeproject.org/files/ENCFF448FLI/@@download/ENCFF448FLI.bam released s3://encode-public/2020/09/29/ebbd7f2f-4f52-496d-9263-a5201d8efd2b/ENCFF448FLI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF477SZN bam bam alignments GRCh38 ENCSR310TYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF572ZEF/ 621874860 ENCODE Processing Pipeline 97dc7750642695f10ff7316950fe130a https://www.encodeproject.org/files/ENCFF477SZN/@@download/ENCFF477SZN.bam released s3://encode-public/2020/09/29/6704245f-ed19-4773-b085-aaec57a5c5f1/ENCFF477SZN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF675GHS fastq fastq reads ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 184774423 Michael Snyder, Stanford fd6513798865bd4bb97c783a97399029 https://www.encodeproject.org/files/ENCFF675GHS/@@download/ENCFF675GHS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/b3360d39-3395-43b3-afb3-13da502ec2f8/ENCFF675GHS.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF472PTP fastq fastq reads ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 137859820 Michael Snyder, Stanford 186a906fd126e8b19e86413e546edb43 https://www.encodeproject.org/files/ENCFF472PTP/@@download/ENCFF472PTP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/b3b0dc12-d527-4ffa-990b-c18709055bc5/ENCFF472PTP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF208OMC fastq fastq reads ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 207433341 Michael Snyder, Stanford 9255227854b9d3f7c1b4eaf091024ccf https://www.encodeproject.org/files/ENCFF208OMC/@@download/ENCFF208OMC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/9d01f131-a511-41ac-926e-1bec7f110b37/ENCFF208OMC.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF281ZIS bam bam alignments ce10 ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF472PTP/, /files/ENCFF675GHS/, /files/ENCFF208OMC/, /files/ENCFF987UMF/ 764185613 Kevin White, UChicago e7364670f1530025915b897514c0b66d https://www.encodeproject.org/files/ENCFF281ZIS/@@download/ENCFF281ZIS.bam released s3://encode-public/2017/04/27/4804715d-10f4-43e9-8a30-d2fcfb497907/ENCFF281ZIS.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF934UWI bam bam alignments ce11 ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF586MOL/, /files/ENCFF472PTP/, /files/ENCFF675GHS/, /files/ENCFF208OMC/ 764898966 Kevin White, UChicago 62cfe84d8810b3e63899319312056512 https://www.encodeproject.org/files/ENCFF934UWI/@@download/ENCFF934UWI.bam released s3://encode-public/2017/04/27/4b12888b-ddaf-414e-91d6-96e24d3e3298/ENCFF934UWI.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF657POX bigWig bigWig signal of unique reads ce10 ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF281ZIS/ 10032948 Kevin White, UChicago 8185ac9589b108f337452127640bdb36 https://www.encodeproject.org/files/ENCFF657POX/@@download/ENCFF657POX.bigWig released s3://encode-public/2017/04/29/c65678d5-872d-482c-8aa5-7c4f98470599/ENCFF657POX.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF133XHG bigWig bigWig read-depth normalized signal ce10 ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF281ZIS/ 10068141 Kevin White, UChicago b9cb648ccdb26dbbca9fda6c68706b54 https://www.encodeproject.org/files/ENCFF133XHG/@@download/ENCFF133XHG.bigWig released s3://encode-public/2017/04/29/af35de5d-992b-435f-89bc-489ed5d9d3cf/ENCFF133XHG.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF668BOE bigWig bigWig read-depth normalized signal ce11 ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF934UWI/ 10064744 Kevin White, UChicago bf45a1dc778a55e7569d44ccbc91995e https://www.encodeproject.org/files/ENCFF668BOE/@@download/ENCFF668BOE.bigWig released s3://encode-public/2017/04/29/481d82fb-b47f-4d3b-8ba2-f848b42a0bdb/ENCFF668BOE.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF629HJS bigWig bigWig signal of unique reads ce11 ENCSR528YHA Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF934UWI/ 10028022 Kevin White, UChicago 29685ac91d1160db0c5d15fca5d6dee6 https://www.encodeproject.org/files/ENCFF629HJS/@@download/ENCFF629HJS.bigWig released s3://encode-public/2017/04/29/f3f77984-7d1f-4ca7-b37f-39895cbf6b36/ENCFF629HJS.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF464DJG bam bam alignments ce11 ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF851SZV/, /files/ENCFF359PRT/, /files/ENCFF854RGL/, /files/ENCFF453MJW/, /files/ENCFF698VRV/, /files/ENCFF680LPN/, /files/ENCFF586MOL/ 749955874 Kevin White, UChicago 9b45c6b0b51c2912d38a83a6cf0d0de1 https://www.encodeproject.org/files/ENCFF464DJG/@@download/ENCFF464DJG.bam released s3://encode-public/2018/01/09/6b77cafb-c37f-4543-8e7c-33d47449c920/ENCFF464DJG.bam Lab custom ce11 released ENCFF857NEC bigWig bigWig read-depth normalized signal ce10 ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF473NKE/ 10034806 Kevin White, UChicago b6ce1286c54036571573e69358ce9067 https://www.encodeproject.org/files/ENCFF857NEC/@@download/ENCFF857NEC.bigWig released s3://encode-public/2018/01/09/0d2ac1be-53d1-4874-aebd-1d21326e4a2c/ENCFF857NEC.bigWig Lab custom ce10 archived ENCFF359PRT fastq fastq reads ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1 1_1 31 single-ended 133720765 Kevin White, UChicago 7dcd32ad496210142262ed5925da5383 https://www.encodeproject.org/files/ENCFF359PRT/@@download/ENCFF359PRT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2018/01/09/3a356e91-10d9-402c-b4c2-38ccbfc83585/ENCFF359PRT.fastq.gz ENCFF680LPN fastq fastq reads ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 2 2_1 31 single-ended 141464105 Kevin White, UChicago b05bb361eb7f5fd8782fbd4b3d0fe4c6 https://www.encodeproject.org/files/ENCFF680LPN/@@download/ENCFF680LPN.fastq.gz Illumina Genome Analyzer released s3://encode-public/2018/01/09/230ce8dd-23dc-4ce9-bb2d-422440f97420/ENCFF680LPN.fastq.gz ENCFF851SZV fastq fastq reads ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1 1_1 31 single-ended 87552642 Kevin White, UChicago 18e46b6d7bf243dc21ec96f9294ebaf3 https://www.encodeproject.org/files/ENCFF851SZV/@@download/ENCFF851SZV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2018/01/09/7256eae3-5e14-4e98-9b4d-32b33f5c9a09/ENCFF851SZV.fastq.gz ENCFF854RGL fastq fastq reads ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1 1_1 31 single-ended 105957684 Kevin White, UChicago d238ac06f713228f73c42c1e88fdef2a https://www.encodeproject.org/files/ENCFF854RGL/@@download/ENCFF854RGL.fastq.gz Illumina Genome Analyzer released s3://encode-public/2018/01/09/695f93c3-5b52-46e3-8dfb-11924b3fa692/ENCFF854RGL.fastq.gz ENCFF453MJW fastq fastq reads ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 2 2_1 31 single-ended 128770675 Kevin White, UChicago 78d8ea86482ced1da1302074261a3186 https://www.encodeproject.org/files/ENCFF453MJW/@@download/ENCFF453MJW.fastq.gz Illumina Genome Analyzer released s3://encode-public/2018/01/09/f77c11d3-95ed-466c-a2b1-3f1189a5f72d/ENCFF453MJW.fastq.gz ENCFF698VRV fastq fastq reads ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 2 2_1 31 single-ended 127662984 Kevin White, UChicago fa38ff307f3daf74fd2a8fdd4835117f https://www.encodeproject.org/files/ENCFF698VRV/@@download/ENCFF698VRV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2018/01/09/645e9706-6a7d-4dd5-aa08-58f3e95f6411/ENCFF698VRV.fastq.gz ENCFF473NKE bam bam alignments ce10 ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF851SZV/, /files/ENCFF359PRT/, /files/ENCFF854RGL/, /files/ENCFF453MJW/, /files/ENCFF698VRV/, /files/ENCFF680LPN/, /files/ENCFF987UMF/ 749548185 Kevin White, UChicago de8d14a22930039ca088c7d8c74ae12f https://www.encodeproject.org/files/ENCFF473NKE/@@download/ENCFF473NKE.bam released s3://encode-public/2018/01/09/d6d4611b-f904-4c6f-aaa9-d99b432fa80f/ENCFF473NKE.bam Lab custom ce10 archived ENCFF039MVB bigWig bigWig signal of unique reads ce10 ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF473NKE/ 10040897 Kevin White, UChicago 76cb2dea7d83bea02495885d76b29d41 https://www.encodeproject.org/files/ENCFF039MVB/@@download/ENCFF039MVB.bigWig released s3://encode-public/2018/01/09/b01e4ebd-213f-4f41-be6c-337be0973d0a/ENCFF039MVB.bigWig Lab custom ce10 archived ENCFF427JQZ bigWig bigWig signal of unique reads ce11 ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF464DJG/ 10044906 Kevin White, UChicago 34ecd224d0387ed8b0066b9d41eaac03 https://www.encodeproject.org/files/ENCFF427JQZ/@@download/ENCFF427JQZ.bigWig released s3://encode-public/2018/01/09/e9253e98-1048-4e6b-a21c-c5783b102184/ENCFF427JQZ.bigWig Lab custom ce11 released ENCFF180NUV bigWig bigWig read-depth normalized signal ce11 ENCSR608DYO Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2018-01-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF464DJG/ 10037700 Kevin White, UChicago 7b77e6210a96f2cf049999be208406f9 https://www.encodeproject.org/files/ENCFF180NUV/@@download/ENCFF180NUV.bigWig released s3://encode-public/2018/01/09/05b3456c-f3dc-4c9a-8e47-1166ee5d1a7a/ENCFF180NUV.bigWig Lab custom ce11 released ENCFF832LNG bam bam unfiltered alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF496ZLN/, /files/ENCFF110MCL/ 725644499 ENCODE Processing Pipeline 5b60404228e0cd8b69a4adcec7a6db2c https://www.encodeproject.org/files/ENCFF832LNG/@@download/ENCFF832LNG.bam released s3://encode-public/2020/09/29/79fbd2da-7259-4bbe-a7f9-968d68d45dcd/ENCFF832LNG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF340EGF fastq fastq reads ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 466897998 Tim Reddy, Duke 8279cb1c5b938e043e064f5cf79f1df7 SRA:SRR5093035 https://www.encodeproject.org/files/ENCFF340EGF/@@download/ENCFF340EGF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/02ed3463-413c-4a9d-a23a-8985dd4730a1/ENCFF340EGF.fastq.gz ENCFF496ZLN fastq fastq reads ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 540917397 Tim Reddy, Duke d8fdc855058fa4072ad2e4ffef9ec6ba SRA:SRR5093033 https://www.encodeproject.org/files/ENCFF496ZLN/@@download/ENCFF496ZLN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/f504e514-6798-4e3b-8783-791f167cd5e4/ENCFF496ZLN.fastq.gz ENCFF404KBB fastq fastq reads ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 694577450 Tim Reddy, Duke 4081d51cdb878949d33ad4a05ecf7756 SRA:SRR5093034 https://www.encodeproject.org/files/ENCFF404KBB/@@download/ENCFF404KBB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/6c948946-9db3-483c-a914-82c5bef0f29f/ENCFF404KBB.fastq.gz ENCFF087YHX bam bam alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF496ZLN/ 578638470 Tim Reddy, Duke 0e76cdee00b5c7e754f89f4cb391a150 https://www.encodeproject.org/files/ENCFF087YHX/@@download/ENCFF087YHX.bam released s3://encode-public/2016/05/31/56925287-5777-430e-87cf-c9b772eeb173/ENCFF087YHX.bam Lab custom GRCh38 archived ENCFF942NAU bam bam alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF404KBB/ 759862267 Tim Reddy, Duke 2469c2035f28fa3fa3e277df487b04de https://www.encodeproject.org/files/ENCFF942NAU/@@download/ENCFF942NAU.bam released s3://encode-public/2016/05/31/7772022a-825b-41dd-b2b9-34cb00d3e6ff/ENCFF942NAU.bam Lab custom GRCh38 archived ENCFF290LVR bam bam alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF340EGF/ 432749218 Tim Reddy, Duke 09dc2326167834cb62195983db9095dc https://www.encodeproject.org/files/ENCFF290LVR/@@download/ENCFF290LVR.bam released s3://encode-public/2016/05/31/f7bb0a12-76b2-4b73-a3a1-47f37f2c7e1b/ENCFF290LVR.bam Lab custom GRCh38 archived ENCFF260DVX bam bam alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF404KBB/ 796447888 ENCODE Processing Pipeline e42a3c8e1b8117694d20ba2e78916830 https://www.encodeproject.org/files/ENCFF260DVX/@@download/ENCFF260DVX.bam released s3://encode-public/2020/09/29/9257b446-646b-413f-a4df-0f034d3e25fa/ENCFF260DVX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF313PKI bam bam unfiltered alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF340EGF/, /files/ENCFF110MCL/ 581470877 ENCODE Processing Pipeline 0aabf71ca66b2565d83593fc9820850f https://www.encodeproject.org/files/ENCFF313PKI/@@download/ENCFF313PKI.bam released s3://encode-public/2020/09/29/51245b9e-5bee-470f-ac35-1132f453490f/ENCFF313PKI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF059WHA bam bam unfiltered alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF404KBB/ 950744639 ENCODE Processing Pipeline aecdd1ad84a607c72aafb5cd902804be https://www.encodeproject.org/files/ENCFF059WHA/@@download/ENCFF059WHA.bam released s3://encode-public/2020/09/29/02480082-6a54-4169-a58e-4e51967ef189/ENCFF059WHA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF487LVT bam bam alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF340EGF/, /files/ENCFF110MCL/ 453935276 ENCODE Processing Pipeline 4c995bc297906efc7f5eafdd50b058da https://www.encodeproject.org/files/ENCFF487LVT/@@download/ENCFF487LVT.bam released s3://encode-public/2020/09/29/579028fa-fbc4-498e-a393-76cb3bb92c5f/ENCFF487LVT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF719MFQ bam bam alignments GRCh38 ENCSR627RBH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF496ZLN/, /files/ENCFF110MCL/ 605628130 ENCODE Processing Pipeline e7797f10c7ebc43ff58248df2750b133 https://www.encodeproject.org/files/ENCFF719MFQ/@@download/ENCFF719MFQ.bam released s3://encode-public/2020/09/29/27dcdb3b-f088-4ba3-9f44-c3779cc26fae/ENCFF719MFQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF035WQF fastq fastq reads ENCSR932WVK Control ChIP-seq /human-donors/ENCDO736MLL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1991560818 Bradley Bernstein, Broad 9dfc2a287dedf589359d37eebf2d8fd5 SRA:SRR13804612 https://www.encodeproject.org/files/ENCFF035WQF/@@download/ENCFF035WQF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/eb0a1192-3c00-461a-a3fd-979450e23bc4/ENCFF035WQF.fastq.gz ENCFF396DZG fastq fastq reads ENCSR932WVK Control ChIP-seq /human-donors/ENCDO736MLL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2009579406 Bradley Bernstein, Broad 83f2eeea837eefb033b5b7434cb355ed SRA:SRR13804613 https://www.encodeproject.org/files/ENCFF396DZG/@@download/ENCFF396DZG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/6f2b21fe-4d1f-4206-9259-ebcbab177df1/ENCFF396DZG.fastq.gz ENCFF808GHH bam bam unfiltered alignments GRCh38 ENCSR932WVK Control ChIP-seq /human-donors/ENCDO736MLL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF035WQF/, /files/ENCFF396DZG/, /files/ENCFF110MCL/ 3905594371 ENCODE Processing Pipeline 342474a01ee0d69adcb784cb9cc3319a https://www.encodeproject.org/files/ENCFF808GHH/@@download/ENCFF808GHH.bam released s3://encode-public/2020/07/19/88af3c57-c79a-4f9a-b8c2-ab2315377bff/ENCFF808GHH.bam ENCODE4 v1.5.0 GRCh38 released ENCFF504YDV bam bam alignments GRCh38 ENCSR932WVK Control ChIP-seq /human-donors/ENCDO736MLL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF035WQF/, /files/ENCFF396DZG/, /files/ENCFF110MCL/ 3175158026 ENCODE Processing Pipeline 5e82f0ef5c18f6e2d15eead002b37e96 https://www.encodeproject.org/files/ENCFF504YDV/@@download/ENCFF504YDV.bam released s3://encode-public/2020/07/19/16fc9870-bfac-4636-9636-2275da90083a/ENCFF504YDV.bam ENCODE4 v1.5.0 GRCh38 released ENCFF206LQY bam bam alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF133HKU/ 927353850 ENCODE Processing Pipeline 4e6bf0eb2a4cd77e36a6b73c572bf99c https://www.encodeproject.org/files/ENCFF206LQY/@@download/ENCFF206LQY.bam released s3://encode-public/2020/09/29/1016a43c-cd6d-461d-9d2c-016c4a8da70f/ENCFF206LQY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF880UIX bam bam alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF619EHQ/ 683385183 ENCODE Processing Pipeline cf86100634a5a7c15ddb293b16af744a https://www.encodeproject.org/files/ENCFF880UIX/@@download/ENCFF880UIX.bam released s3://encode-public/2020/09/29/61f97815-e778-42e3-aca7-1ba55a9902fe/ENCFF880UIX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF619EHQ fastq fastq reads ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 586329234 Tim Reddy, Duke 5625d815533f42c39007d8878694e297 SRA:SRR5092939 https://www.encodeproject.org/files/ENCFF619EHQ/@@download/ENCFF619EHQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/26822e19-b547-4292-bc74-0ac11c9e3314/ENCFF619EHQ.fastq.gz ENCFF133HKU fastq fastq reads ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 812026533 Tim Reddy, Duke 18a2265933222a52c5d6dd22e30405d9 SRA:SRR5092938 https://www.encodeproject.org/files/ENCFF133HKU/@@download/ENCFF133HKU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/555eb42c-c5d7-4acf-bc6c-a2e24dc7209e/ENCFF133HKU.fastq.gz ENCFF796VRG fastq fastq reads ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 589456049 Tim Reddy, Duke c1d08b08627470d1b6bf279bde6bd555 SRA:SRR5092940 https://www.encodeproject.org/files/ENCFF796VRG/@@download/ENCFF796VRG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/3d07de77-93e6-4eee-ae40-988941092756/ENCFF796VRG.fastq.gz ENCFF869CFK bam bam alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF133HKU/ 886559740 Tim Reddy, Duke bf1e11b32294c9d148d50e59f0f30312 https://www.encodeproject.org/files/ENCFF869CFK/@@download/ENCFF869CFK.bam released s3://encode-public/2016/05/31/53554334-3532-42fb-93f7-6e85d5745b56/ENCFF869CFK.bam Lab custom GRCh38 archived ENCFF672SZY bam bam alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF619EHQ/ 654678492 Tim Reddy, Duke ddb7b429882f35da7c854013246df6dd https://www.encodeproject.org/files/ENCFF672SZY/@@download/ENCFF672SZY.bam released s3://encode-public/2016/05/31/c8fa94ac-7536-4f78-b3cf-c3fb35b2c5d0/ENCFF672SZY.bam Lab custom GRCh38 archived ENCFF634KQK bam bam alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF796VRG/ 647591232 Tim Reddy, Duke 13b71d9ed6079c3b8631012575f73e1e https://www.encodeproject.org/files/ENCFF634KQK/@@download/ENCFF634KQK.bam released s3://encode-public/2016/05/31/bde28442-d3d5-473d-be7b-f63736d71836/ENCFF634KQK.bam Lab custom GRCh38 archived ENCFF224UUS bam bam unfiltered alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF133HKU/ 1099886584 ENCODE Processing Pipeline 9572d64cda78a9fdb64de504eff7110a https://www.encodeproject.org/files/ENCFF224UUS/@@download/ENCFF224UUS.bam released s3://encode-public/2020/09/29/8451ffab-c4d5-4a0c-b609-446333fd5c15/ENCFF224UUS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF411DBZ bam bam unfiltered alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF619EHQ/ 804842997 ENCODE Processing Pipeline f7a20879036418ede2cd91e6eca8cb56 https://www.encodeproject.org/files/ENCFF411DBZ/@@download/ENCFF411DBZ.bam released s3://encode-public/2020/09/29/261c5dc9-53eb-4ac4-a8ad-568cf12ba457/ENCFF411DBZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF198TLQ bam bam unfiltered alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF796VRG/ 807843258 ENCODE Processing Pipeline 78db4f789f14877982df81e01ab5d08b https://www.encodeproject.org/files/ENCFF198TLQ/@@download/ENCFF198TLQ.bam released s3://encode-public/2020/09/29/0558815d-f50a-4f72-a026-7dac382be1b5/ENCFF198TLQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF304YDU bam bam alignments GRCh38 ENCSR491TAD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF796VRG/ 675910344 ENCODE Processing Pipeline 40c08aeea5cd4c66469cb36d10b8d88c https://www.encodeproject.org/files/ENCFF304YDU/@@download/ENCFF304YDU.bam released s3://encode-public/2020/09/29/80acca94-e019-42a4-947d-e80dc7e9bd9a/ENCFF304YDU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF647AVQ fastq fastq reads ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 86895479 Michael Snyder, Stanford 3f9de64af370721a7eced78d86af4681 https://www.encodeproject.org/files/ENCFF647AVQ/@@download/ENCFF647AVQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/958b4aea-241e-488d-be03-9516b51d230c/ENCFF647AVQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF932QTN fastq fastq reads ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 110356952 Michael Snyder, Stanford 735b48253640ea7004bb7fcbd237bc4c https://www.encodeproject.org/files/ENCFF932QTN/@@download/ENCFF932QTN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ca1c4274-bb6b-4871-b955-8a3169287adc/ENCFF932QTN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF104SKI bam bam alignments ce10 ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF647AVQ/, /files/ENCFF932QTN/, /files/ENCFF987UMF/ 261336424 Kevin White, UChicago a9b020171e8880cccca2da39e63b6076 https://www.encodeproject.org/files/ENCFF104SKI/@@download/ENCFF104SKI.bam released s3://encode-public/2016/10/18/02a43f98-1d7e-4403-b3e8-c2e3ffa3dd13/ENCFF104SKI.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF458YKE bam bam alignments ce11 ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF647AVQ/, /files/ENCFF932QTN/, /files/ENCFF586MOL/ 261609527 Kevin White, UChicago 4315c0e18d768f2fb08fee445c3ab795 https://www.encodeproject.org/files/ENCFF458YKE/@@download/ENCFF458YKE.bam released s3://encode-public/2016/10/19/290338d2-3660-47f2-9757-68ccb89afac4/ENCFF458YKE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF578YPR bigWig bigWig read-depth normalized signal ce10 ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF104SKI/ 10036937 Kevin White, UChicago 47f71f2325e7a45e4c5ac665bd5c9e07 https://www.encodeproject.org/files/ENCFF578YPR/@@download/ENCFF578YPR.bigWig released s3://encode-public/2016/10/20/a3fe24cd-601d-403c-9122-9e393c0f22e6/ENCFF578YPR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF306MXG bigWig bigWig signal of unique reads ce10 ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF104SKI/ 10054438 Kevin White, UChicago 3ca2e4f183981f94aa48059eaf0d2604 https://www.encodeproject.org/files/ENCFF306MXG/@@download/ENCFF306MXG.bigWig released s3://encode-public/2016/10/20/996bd115-ba7e-4929-a51a-5756b28d30bf/ENCFF306MXG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF158EMO bigWig bigWig read-depth normalized signal ce11 ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF458YKE/ 10034635 Kevin White, UChicago 54377089bd218033c0d3308726a39bdd https://www.encodeproject.org/files/ENCFF158EMO/@@download/ENCFF158EMO.bigWig released s3://encode-public/2016/10/21/4c1cace7-cc86-4734-83c7-8bcb9cb26371/ENCFF158EMO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF400HHO bigWig bigWig signal of unique reads ce11 ENCSR031AIO Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF458YKE/ 10056985 Kevin White, UChicago 75b46dbaf46d423040e1b4e6b72ec2a4 https://www.encodeproject.org/files/ENCFF400HHO/@@download/ENCFF400HHO.bigWig released s3://encode-public/2016/10/21/7e0778dc-06ba-4319-90a1-2b11ec9524ae/ENCFF400HHO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF129DZY fastq fastq reads ENCSR164BWS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1385876198 Richard Myers, HAIB 033289aa3dfad9170eac8cd9c6a2486b SRA:SRR5111205 https://www.encodeproject.org/files/ENCFF129DZY/@@download/ENCFF129DZY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/fa8f301e-724b-4c2c-ab22-79e8b3032cbe/ENCFF129DZY.fastq.gz ENCFF981OXO bam bam unfiltered alignments mm10 ENCSR164BWS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF129DZY/ 1555170623 ENCODE Processing Pipeline 931dd468254a6e44fe49cc736b972578 https://www.encodeproject.org/files/ENCFF981OXO/@@download/ENCFF981OXO.bam released s3://encode-public/2016/05/20/e28f9c80-41a8-4a6a-aaa0-fd27162f915b/ENCFF981OXO.bam ENCODE3 mm10 archived ENCFF887OHK bam bam alignments mm10 ENCSR164BWS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF129DZY/ 1189821729 ENCODE Processing Pipeline d6db5c8566e69f1a226b8c3d4216e9f6 https://www.encodeproject.org/files/ENCFF887OHK/@@download/ENCFF887OHK.bam released s3://encode-public/2016/05/20/f72dd3de-c783-4c75-81ad-27a04f8fd164/ENCFF887OHK.bam ENCODE3 mm10 archived ENCFF117KGW bam bam alignments mm10 ENCSR164BWS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF129DZY/ 1229172276 ENCODE Processing Pipeline 0e4196e27875cb22344878effe0ece7f https://www.encodeproject.org/files/ENCFF117KGW/@@download/ENCFF117KGW.bam released s3://encode-public/2020/11/06/d7a93e0c-a7db-4951-8655-a5c3b30b7a98/ENCFF117KGW.bam ENCODE4 v1.6.1 mm10 released ENCFF187TUF bam bam unfiltered alignments mm10 ENCSR164BWS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF129DZY/ 1532691680 ENCODE Processing Pipeline 00c0341912484cbe887675d23b2383c4 https://www.encodeproject.org/files/ENCFF187TUF/@@download/ENCFF187TUF.bam released s3://encode-public/2020/11/06/6201e5a5-4d69-4871-8534-63fcfe6a7df7/ENCFF187TUF.bam ENCODE4 v1.6.1 mm10 released ENCFF306PVM fastq fastq reads ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 223891586 Michael Snyder, Stanford c8fd6242b9cb3ad342e262a4d0ed85bd https://www.encodeproject.org/files/ENCFF306PVM/@@download/ENCFF306PVM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fc04a98e-604a-46e3-8a88-86d59f069a92/ENCFF306PVM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF415WHK fastq fastq reads ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 208481849 Michael Snyder, Stanford 9a9a198af1720ced7e730d63ce27165e https://www.encodeproject.org/files/ENCFF415WHK/@@download/ENCFF415WHK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/08772928-01e5-4d57-a04d-0797cf66a2b7/ENCFF415WHK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF835MVV bam bam alignments ce10 ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF415WHK/, /files/ENCFF306PVM/, /files/ENCFF987UMF/ 564584917 Kevin White, UChicago b43c95482877768f21d994a5a0b38905 https://www.encodeproject.org/files/ENCFF835MVV/@@download/ENCFF835MVV.bam released s3://encode-public/2016/10/18/ad4ed03b-afe2-41a9-b045-58fec6132f15/ENCFF835MVV.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF679YSD bam bam alignments ce11 ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF415WHK/, /files/ENCFF306PVM/, /files/ENCFF586MOL/ 565217393 Kevin White, UChicago 5154b9b794b6ee7ca0de787ab47963d2 https://www.encodeproject.org/files/ENCFF679YSD/@@download/ENCFF679YSD.bam released s3://encode-public/2016/10/19/c363efbb-10d0-42b6-89a8-c2d41ec590ee/ENCFF679YSD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF155ZEV bigWig bigWig signal of unique reads ce10 ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF835MVV/ 9999689 Kevin White, UChicago daa4e2d1ee52671191ba75276a67b418 https://www.encodeproject.org/files/ENCFF155ZEV/@@download/ENCFF155ZEV.bigWig released s3://encode-public/2016/10/20/3540b6c4-6f5e-404c-8529-1f4912546afa/ENCFF155ZEV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF868QFT bigWig bigWig read-depth normalized signal ce10 ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF835MVV/ 10039152 Kevin White, UChicago a5572876ea6502a431e2be6f6199ca23 https://www.encodeproject.org/files/ENCFF868QFT/@@download/ENCFF868QFT.bigWig released s3://encode-public/2016/10/20/921758ca-810c-460d-aa4c-0e78fd1a8936/ENCFF868QFT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF326TMR bigWig bigWig read-depth normalized signal ce11 ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF679YSD/ 10038235 Kevin White, UChicago 27390ceb10e37913467e7e9205702a6d https://www.encodeproject.org/files/ENCFF326TMR/@@download/ENCFF326TMR.bigWig released s3://encode-public/2016/10/21/19195514-373f-498e-a782-b6a26b00f633/ENCFF326TMR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF572OXO bigWig bigWig signal of unique reads ce11 ENCSR528CPO Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF679YSD/ 9996311 Kevin White, UChicago d3211eea3fa3ab6a03408a82aae38297 https://www.encodeproject.org/files/ENCFF572OXO/@@download/ENCFF572OXO.bigWig released s3://encode-public/2016/10/21/691b73d8-3b4f-4a07-b3e3-dea9248d81f0/ENCFF572OXO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF839LMR fastq fastq reads ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 4 4_1 33 single-ended 76132892 Kevin White, UChicago bbc57fcf5fff3a86e1bc336d45e28cff https://www.encodeproject.org/files/ENCFF839LMR/@@download/ENCFF839LMR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/0f4d2194-530c-48ec-9b92-eb4358145d8c/ENCFF839LMR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF477ZXZ fastq fastq reads ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 90065458 Kevin White, UChicago 4419fae890a068e6295ed14fa93eee7a https://www.encodeproject.org/files/ENCFF477ZXZ/@@download/ENCFF477ZXZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/9fcf4e94-dab7-4b68-922c-580651a2bc52/ENCFF477ZXZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF366AFZ fastq fastq reads ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 34276224 Kevin White, UChicago 714fc427c30e7d930fd99710bfd827e0 https://www.encodeproject.org/files/ENCFF366AFZ/@@download/ENCFF366AFZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/14641c98-ac9c-4ea3-a056-352b6bb209d3/ENCFF366AFZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF377CPZ bam bam alignments ce10 ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 4 1_1, 2_1, 4_1 32 /files/ENCFF987UMF/, /files/ENCFF477ZXZ/, /files/ENCFF366AFZ/, /files/ENCFF839LMR/ 199335651 Kevin White, UChicago 5e7c2114bc42c1993e4ceebfb761dd06 https://www.encodeproject.org/files/ENCFF377CPZ/@@download/ENCFF377CPZ.bam released s3://encode-public/2017/10/30/4fe9913d-729e-4819-b16c-f7214f20dd11/ENCFF377CPZ.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF127HAV bam bam alignments ce11 ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 4 1_1, 2_1, 4_1 32 /files/ENCFF586MOL/, /files/ENCFF477ZXZ/, /files/ENCFF366AFZ/, /files/ENCFF839LMR/ 199466539 Kevin White, UChicago dea7bb7f65ad9a67810bfba639e55140 https://www.encodeproject.org/files/ENCFF127HAV/@@download/ENCFF127HAV.bam released s3://encode-public/2017/10/30/f0cfad1f-d066-4861-b022-74a3fcc339e8/ENCFF127HAV.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF476FQM bigWig bigWig signal of unique reads ce10 ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 4 1_1, 2_1, 4_1 /files/ENCFF377CPZ/ 10007944 Kevin White, UChicago bdafff7f1e4356dbd6d54fbb88a246ce https://www.encodeproject.org/files/ENCFF476FQM/@@download/ENCFF476FQM.bigWig released s3://encode-public/2017/10/31/a4ea4997-4421-4247-90d4-942df54099a9/ENCFF476FQM.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF924BQJ bigWig bigWig read-depth normalized signal ce10 ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 4 1_1, 2_1, 4_1 /files/ENCFF377CPZ/ 10029359 Kevin White, UChicago 5642fdb36ef5bbf1833f14218b6b53f5 https://www.encodeproject.org/files/ENCFF924BQJ/@@download/ENCFF924BQJ.bigWig released s3://encode-public/2017/10/31/e0f74d21-e46c-4227-9406-d50521e5c271/ENCFF924BQJ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF135RRB bigWig bigWig signal of unique reads ce11 ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 4 1_1, 2_1, 4_1 /files/ENCFF127HAV/ 10009118 Kevin White, UChicago 9d5ac6f116b5c847f0fe241f5ab0a546 https://www.encodeproject.org/files/ENCFF135RRB/@@download/ENCFF135RRB.bigWig released s3://encode-public/2017/10/31/49982c5a-7458-4131-8c2d-1ad61b038c5f/ENCFF135RRB.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF712MVU bigWig bigWig read-depth normalized signal ce11 ENCSR756JUX Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 4 1_1, 2_1, 4_1 /files/ENCFF127HAV/ 10032734 Kevin White, UChicago 48e34d5a198f21fdcdef464c44e71781 https://www.encodeproject.org/files/ENCFF712MVU/@@download/ENCFF712MVU.bigWig released s3://encode-public/2017/10/31/28c1ae38-c3c1-4ad7-bf98-9c38d7c644e5/ENCFF712MVU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF928UTV bam bam alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF754TTA/, /files/ENCFF110MCL/ 2080001479 ENCODE Processing Pipeline 6db432c8058ae8a63d520e454a22cf1c https://www.encodeproject.org/files/ENCFF928UTV/@@download/ENCFF928UTV.bam released s3://encode-public/2020/09/29/75470d09-3623-430e-ba1d-b5a63c995a81/ENCFF928UTV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF439UUO bam bam alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF910GIL/, /files/ENCFF110MCL/ 1101344785 ENCODE Processing Pipeline f302480bc439ab4a0e492006dd738afe https://www.encodeproject.org/files/ENCFF439UUO/@@download/ENCFF439UUO.bam released s3://encode-public/2020/09/29/53bd52b5-cd5a-4ff0-b826-61f3cc04f540/ENCFF439UUO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF156NLX bam bam unfiltered alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF910GIL/, /files/ENCFF110MCL/ 1331724386 ENCODE Processing Pipeline 46b84145395331468de8940fe7aea916 https://www.encodeproject.org/files/ENCFF156NLX/@@download/ENCFF156NLX.bam released s3://encode-public/2020/09/29/e6096f25-18b6-4be1-810f-cbb130851aff/ENCFF156NLX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF690PEG bam bam alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF464IKO/, /files/ENCFF110MCL/ 1551992372 ENCODE Processing Pipeline 9b5fafeacbf789491460408f2206316a https://www.encodeproject.org/files/ENCFF690PEG/@@download/ENCFF690PEG.bam released s3://encode-public/2020/09/29/84c3d23e-1051-41ca-a161-ae31fd5e2eb1/ENCFF690PEG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF174CIV bam bam alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF910GIL/ 1072227914 Tim Reddy, Duke 97c5ee73476e18eeaaeec4b609f5f5c7 https://www.encodeproject.org/files/ENCFF174CIV/@@download/ENCFF174CIV.bam released s3://encode-public/2017/10/13/6105c582-8887-4649-9c22-3da7ffd2397e/ENCFF174CIV.bam Lab custom GRCh38 archived ENCFF754TTA fastq fastq reads ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 1876226167 Tim Reddy, Duke 9183001e048a1c2c901180440bb5122f SRA:SRR14638464 https://www.encodeproject.org/files/ENCFF754TTA/@@download/ENCFF754TTA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/8dd03c93-ecda-49e3-9c5f-450e02f462cf/ENCFF754TTA.fastq.gz ENCFF388YCZ bam bam alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF464IKO/ 1510192165 Tim Reddy, Duke b914d47a3141130b9a4c7f323d69c7a1 https://www.encodeproject.org/files/ENCFF388YCZ/@@download/ENCFF388YCZ.bam released s3://encode-public/2017/10/13/d999309a-0831-4478-a4f2-8db1a7c30bd0/ENCFF388YCZ.bam Lab custom GRCh38 archived ENCFF464IKO fastq fastq reads ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 1408851973 Tim Reddy, Duke f9b5cdd1bbe64011546dea41625d9108 SRA:SRR14638463 https://www.encodeproject.org/files/ENCFF464IKO/@@download/ENCFF464IKO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/a71abf42-52e1-48c2-82a8-851e25e20351/ENCFF464IKO.fastq.gz ENCFF465VQL bam bam alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF754TTA/ 2028020536 Tim Reddy, Duke c3ac17fb6d6089f7ee45db46bb9580c0 https://www.encodeproject.org/files/ENCFF465VQL/@@download/ENCFF465VQL.bam released s3://encode-public/2017/10/13/0e982a4c-2788-4526-8eff-8cf702a188d5/ENCFF465VQL.bam Lab custom GRCh38 archived ENCFF910GIL fastq fastq reads ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 964569058 Tim Reddy, Duke e1ee887e7670c340de3fbcd62d64974b SRA:SRR14638465 https://www.encodeproject.org/files/ENCFF910GIL/@@download/ENCFF910GIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/22ab733e-e5db-453f-b206-6ed888e38a55/ENCFF910GIL.fastq.gz ENCFF578UOD bam bam unfiltered alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF754TTA/, /files/ENCFF110MCL/ 2535419061 ENCODE Processing Pipeline 356eeab0d5fb5ecc043c0e41e4749174 https://www.encodeproject.org/files/ENCFF578UOD/@@download/ENCFF578UOD.bam released s3://encode-public/2020/09/29/51c03b68-0419-44c2-9200-1880272a98ac/ENCFF578UOD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF521MZX bam bam unfiltered alignments GRCh38 ENCSR814XCZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF464IKO/, /files/ENCFF110MCL/ 1911017919 ENCODE Processing Pipeline 1f6d2fa41e9f8c5a02760d0ca3826021 https://www.encodeproject.org/files/ENCFF521MZX/@@download/ENCFF521MZX.bam released s3://encode-public/2020/09/29/38fb1f68-0271-4341-b98e-4d215a39b7d7/ENCFF521MZX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF673BCP bam bam alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF600HSN/ 699934058 Tim Reddy, Duke e58cca4d2a869f5ca05a3ef80f573d47 https://www.encodeproject.org/files/ENCFF673BCP/@@download/ENCFF673BCP.bam released s3://encode-public/2017/10/13/0bd77630-4f6f-480b-972f-851438c4e943/ENCFF673BCP.bam Lab custom GRCh38 archived ENCFF854CYY bam bam alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF360EKK/ 910170548 Tim Reddy, Duke b56324552b586538c85a391e35e89283 https://www.encodeproject.org/files/ENCFF854CYY/@@download/ENCFF854CYY.bam released s3://encode-public/2017/10/13/2ba8d645-9274-4950-915c-b928e1d12bdf/ENCFF854CYY.bam Lab custom GRCh38 archived ENCFF600HSN fastq fastq reads ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 626215518 Tim Reddy, Duke 7623118e27e8b057a981b604e46ae2c6 SRA:SRR14637510 https://www.encodeproject.org/files/ENCFF600HSN/@@download/ENCFF600HSN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/17d8fd23-4852-435e-b011-5492f5c7dcdc/ENCFF600HSN.fastq.gz ENCFF961IHR fastq fastq reads ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 2135420595 Tim Reddy, Duke a7b0578e2f502988286aab7eecd729bc SRA:SRR14637509 https://www.encodeproject.org/files/ENCFF961IHR/@@download/ENCFF961IHR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/e150da4a-fde3-4820-b428-3062378822fa/ENCFF961IHR.fastq.gz ENCFF681BAP bam bam alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF961IHR/ 2305147928 Tim Reddy, Duke ff296a084fc816b1088caee8c33324ae https://www.encodeproject.org/files/ENCFF681BAP/@@download/ENCFF681BAP.bam released s3://encode-public/2017/10/13/e9ba006c-b11d-4235-8b39-1e7997074e9a/ENCFF681BAP.bam Lab custom GRCh38 archived ENCFF360EKK fastq fastq reads ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 828463583 Tim Reddy, Duke f1df05d8a260b3fe33b53cbb3d9a6cea SRA:SRR14637511 https://www.encodeproject.org/files/ENCFF360EKK/@@download/ENCFF360EKK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/a1a3272d-20af-429f-ba93-39885037923c/ENCFF360EKK.fastq.gz ENCFF797ZYM bam bam alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF961IHR/ 2366254882 ENCODE Processing Pipeline 8ed82ef6c232ebc9b7d84d8d945e4a07 https://www.encodeproject.org/files/ENCFF797ZYM/@@download/ENCFF797ZYM.bam released s3://encode-public/2020/09/30/df45cefb-22ee-4e03-ad3b-cf478df19f9a/ENCFF797ZYM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF624AZA bam bam unfiltered alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF961IHR/ 2840897785 ENCODE Processing Pipeline e933375133c69858fad7ff1a9659d13c https://www.encodeproject.org/files/ENCFF624AZA/@@download/ENCFF624AZA.bam released s3://encode-public/2020/09/30/8b6b6c8d-117d-4e9a-8279-8ad5511d354f/ENCFF624AZA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF571SGY bam bam unfiltered alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF600HSN/, /files/ENCFF110MCL/ 873958156 ENCODE Processing Pipeline 51b744d51c708b0b74fd1a15eac23398 https://www.encodeproject.org/files/ENCFF571SGY/@@download/ENCFF571SGY.bam released s3://encode-public/2020/09/30/0f45a24f-3a5a-4e01-a46b-ed49161b026c/ENCFF571SGY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF337EKS bam bam alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF600HSN/, /files/ENCFF110MCL/ 719856013 ENCODE Processing Pipeline 4b321fedaed21fd0388eb00635ebbead https://www.encodeproject.org/files/ENCFF337EKS/@@download/ENCFF337EKS.bam released s3://encode-public/2020/09/30/7d42c13f-4d1d-4475-afe5-c44aa299436b/ENCFF337EKS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF563UJK bam bam alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF360EKK/, /files/ENCFF110MCL/ 933949566 ENCODE Processing Pipeline 5c214ce9f10d5aafe5fd9feda2485e0b https://www.encodeproject.org/files/ENCFF563UJK/@@download/ENCFF563UJK.bam released s3://encode-public/2020/09/30/4ac0c30b-f427-47f4-a24b-9a684df7656f/ENCFF563UJK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF845VWS bam bam unfiltered alignments GRCh38 ENCSR204GMP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF360EKK/, /files/ENCFF110MCL/ 1128732016 ENCODE Processing Pipeline d72848d43ea27ebaf578589b2adfc2dc https://www.encodeproject.org/files/ENCFF845VWS/@@download/ENCFF845VWS.bam released s3://encode-public/2020/09/30/c1c45b47-797a-4088-b90b-6f5ab530cb43/ENCFF845VWS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF138DZC bam bam alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF272DGG/, /files/ENCFF110MCL/ 2103682132 ENCODE Processing Pipeline e16ae8d16f46da6e726f0fcd1714c8c6 https://www.encodeproject.org/files/ENCFF138DZC/@@download/ENCFF138DZC.bam released s3://encode-public/2020/09/30/3f159ea5-a36c-4180-b5ba-a790ac9f76e2/ENCFF138DZC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF183KQM bam bam alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF272DGG/ 2050269700 Tim Reddy, Duke 6961a0849a6693c6c9ba0361518ffd9f https://www.encodeproject.org/files/ENCFF183KQM/@@download/ENCFF183KQM.bam released s3://encode-public/2017/10/13/e29092ca-5fd4-403d-8cc7-1945bec57e70/ENCFF183KQM.bam Lab custom GRCh38 archived ENCFF142DCQ bam bam alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220JJE/ 1272972178 Tim Reddy, Duke 1511ce4920f0ccf8d1071091b38608e3 https://www.encodeproject.org/files/ENCFF142DCQ/@@download/ENCFF142DCQ.bam released s3://encode-public/2017/10/13/f9b716c7-a798-4adb-809e-d6bd7fd91dce/ENCFF142DCQ.bam Lab custom GRCh38 archived ENCFF272DGG fastq fastq reads ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 1878817217 Tim Reddy, Duke f7650ec2ca4c9bd770b48784f3f282ff SRA:SRR14636878 https://www.encodeproject.org/files/ENCFF272DGG/@@download/ENCFF272DGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/472484c7-4112-4a2c-a244-d2d4bcdddb95/ENCFF272DGG.fastq.gz ENCFF386KQX bam bam alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF871AWA/ 910688956 Tim Reddy, Duke 439ea9289690584c5b57ae1560792f40 https://www.encodeproject.org/files/ENCFF386KQX/@@download/ENCFF386KQX.bam released s3://encode-public/2017/10/13/a2f1005a-2e86-419b-a253-940b7290d608/ENCFF386KQX.bam Lab custom GRCh38 archived ENCFF220JJE fastq fastq reads ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 1156355479 Tim Reddy, Duke a103749828fe96a53d70bad7f86ed31b SRA:SRR14636877 https://www.encodeproject.org/files/ENCFF220JJE/@@download/ENCFF220JJE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/72a16d41-811b-458d-a6bd-aeb1581b508a/ENCFF220JJE.fastq.gz ENCFF871AWA fastq fastq reads ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 809734070 Tim Reddy, Duke 1ba7eb8899319b200ab9085b4b061add SRA:SRR14636876 https://www.encodeproject.org/files/ENCFF871AWA/@@download/ENCFF871AWA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/d21342ff-2edc-48a4-86eb-fda68e795309/ENCFF871AWA.fastq.gz ENCFF365GCZ bam bam unfiltered alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF220JJE/, /files/ENCFF110MCL/ 1582358161 ENCODE Processing Pipeline ae1015109cf4e4cdebd488ca1a31dc8a https://www.encodeproject.org/files/ENCFF365GCZ/@@download/ENCFF365GCZ.bam released s3://encode-public/2020/09/30/f4a15f29-17cb-4b95-84be-865886a80186/ENCFF365GCZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF912MTD bam bam alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF220JJE/, /files/ENCFF110MCL/ 1308922422 ENCODE Processing Pipeline 57b9f1687eb221aaf545105ca9f3b415 https://www.encodeproject.org/files/ENCFF912MTD/@@download/ENCFF912MTD.bam released s3://encode-public/2020/09/30/6c163408-5683-4900-8f69-d844254dceab/ENCFF912MTD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF283BWH bam bam alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF871AWA/, /files/ENCFF110MCL/ 933635498 ENCODE Processing Pipeline 131986017be372036650d819433f0f24 https://www.encodeproject.org/files/ENCFF283BWH/@@download/ENCFF283BWH.bam released s3://encode-public/2020/09/30/d87141c4-3d26-4dc0-8d75-e564ecf8150a/ENCFF283BWH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF575PAW bam bam unfiltered alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF272DGG/, /files/ENCFF110MCL/ 2536953574 ENCODE Processing Pipeline ba3c3bca86bbe750bfbc8bcb6f282554 https://www.encodeproject.org/files/ENCFF575PAW/@@download/ENCFF575PAW.bam released s3://encode-public/2020/09/30/0838e032-3fbc-417a-aadc-d63499f5ffd4/ENCFF575PAW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF075FWB bam bam unfiltered alignments GRCh38 ENCSR085WWL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF871AWA/, /files/ENCFF110MCL/ 1127364143 ENCODE Processing Pipeline e4c25f19f1aec15edd7859689becada7 https://www.encodeproject.org/files/ENCFF075FWB/@@download/ENCFF075FWB.bam released s3://encode-public/2020/09/30/d9c3b6c9-e10b-4d80-9cd9-b57f5f429181/ENCFF075FWB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF309ABE fastq fastq reads ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 299757953 Kevin White, UChicago a309df81b70e42f77e57688b8d0cc88e https://www.encodeproject.org/files/ENCFF309ABE/@@download/ENCFF309ABE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/04/61c2c2c9-e580-4865-b8b5-c7a3a2a834f4/ENCFF309ABE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF864AJX fastq fastq reads ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 50 single-ended 1094268790 Kevin White, UChicago 524d4c9f8b27f5da7f6ac2120fe188cd https://www.encodeproject.org/files/ENCFF864AJX/@@download/ENCFF864AJX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/04/5dabce1c-5f36-4108-8978-86b5b6c7b116/ENCFF864AJX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF940VUZ bam bam alignments ce11 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF309ABE/, /files/ENCFF586MOL/ 361090896 Kevin White, UChicago 5346c6f3b978c8faa965baeab3bfd630 https://www.encodeproject.org/files/ENCFF940VUZ/@@download/ENCFF940VUZ.bam released s3://encode-public/2016/10/05/5d47df86-e451-4403-9240-144e1a87f056/ENCFF940VUZ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF024LOL bam bam alignments ce10 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 49 /files/ENCFF864AJX/, /files/ENCFF987UMF/ 1289258583 Kevin White, UChicago 151666c4e6a1fba4990d76a50fa1f4f6 https://www.encodeproject.org/files/ENCFF024LOL/@@download/ENCFF024LOL.bam released s3://encode-public/2016/10/05/2ee85853-2506-4ffe-ac89-218d6007709d/ENCFF024LOL.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF121VDF bam bam alignments ce10 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF309ABE/, /files/ENCFF987UMF/ 360739781 Kevin White, UChicago 073a145f4c459aca94822804f2aded9a https://www.encodeproject.org/files/ENCFF121VDF/@@download/ENCFF121VDF.bam released s3://encode-public/2016/10/05/922befe5-afc4-4e53-abce-28bf38a51599/ENCFF121VDF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF347YYK bam bam alignments ce11 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 49 /files/ENCFF864AJX/, /files/ENCFF586MOL/ 1290350676 Kevin White, UChicago 87eea0d7b5cee3a2c97f2877bb1f9141 https://www.encodeproject.org/files/ENCFF347YYK/@@download/ENCFF347YYK.bam released s3://encode-public/2016/10/05/490e4bbb-1b5d-4db4-a499-60dc25a6c9c5/ENCFF347YYK.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF089IFL bigWig bigWig signal of unique reads ce10 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF024LOL/, /files/ENCFF121VDF/ 10001207 Kevin White, UChicago 51bb55d01a0768a6e4a2de7c53167ab2 https://www.encodeproject.org/files/ENCFF089IFL/@@download/ENCFF089IFL.bigWig released s3://encode-public/2016/10/06/c97a471e-97a5-4187-9098-ba4d3cfe97d2/ENCFF089IFL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF949MDL bigWig bigWig read-depth normalized signal ce10 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF024LOL/, /files/ENCFF121VDF/ 9937583 Kevin White, UChicago 7970f604f11b6623288554745b540ec9 https://www.encodeproject.org/files/ENCFF949MDL/@@download/ENCFF949MDL.bigWig released s3://encode-public/2016/10/06/1a02b4ff-2e9c-437f-952e-818cd2dbebf5/ENCFF949MDL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF196XMS bigWig bigWig read-depth normalized signal ce11 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF347YYK/, /files/ENCFF940VUZ/ 9937586 Kevin White, UChicago 1de272d449a71062c01f8985f54bb8b7 https://www.encodeproject.org/files/ENCFF196XMS/@@download/ENCFF196XMS.bigWig released s3://encode-public/2016/10/06/a8aee725-806b-4dbf-8d11-ec7f1f2c8acf/ENCFF196XMS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF508ZMY bigWig bigWig signal of unique reads ce11 ENCSR183CDG Control ChIP-seq /worm-donors/ENCDO980JSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176449/'], '@type': ['Target', 'Item'], 'name': 'tbx-9-celegans', 'label': 'tbx-9', '@id': '/targets/tbx-9-celegans/', 'title': 'tbx-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bc3f3fdd-c20b-416f-a694-1c9c227d524a', 'status': 'released'} ce11 III 10327867 10363855 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF347YYK/, /files/ENCFF940VUZ/ 10001209 Kevin White, UChicago 03c48aecd8eb344f347a66f543425c03 https://www.encodeproject.org/files/ENCFF508ZMY/@@download/ENCFF508ZMY.bigWig released s3://encode-public/2016/10/06/91c794f5-7085-4f0d-9dda-4ee414791b81/ENCFF508ZMY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF032GZG fastq fastq reads ENCSR130CHN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 469901106 Kevin White, UChicago c5053b21d062528019cdef29be341333 https://www.encodeproject.org/files/ENCFF032GZG/@@download/ENCFF032GZG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/09/01/4340a18a-4718-4d37-8201-7fb5c23d8662/ENCFF032GZG.fastq.gz ENCFF436TJC bam bam alignments dm3 ENCSR130CHN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF032GZG/ 583323865 Kevin White, UChicago f930d6ea93917f0f88e06f9567b24bae https://www.encodeproject.org/files/ENCFF436TJC/@@download/ENCFF436TJC.bam released s3://encode-public/2017/06/19/9e3fa598-c45c-485a-a28b-b80a0e271f78/ENCFF436TJC.bam Lab custom dm3 archived ENCFF132GBG bam bam alignments dm6 ENCSR130CHN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF032GZG/ 576533495 Kevin White, UChicago aad4f4967360cd4e1409e996b2550df2 https://www.encodeproject.org/files/ENCFF132GBG/@@download/ENCFF132GBG.bam released s3://encode-public/2017/06/28/c035f6a6-dfcd-4064-9e81-4db2d826b1ad/ENCFF132GBG.bam Lab custom dm6 released ENCFF337SNY bigWig bigWig signal of unique reads dm3 ENCSR130CHN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF436TJC/ 15302908 Kevin White, UChicago c95d2376aa83153371b5e2afd03e1033 https://www.encodeproject.org/files/ENCFF337SNY/@@download/ENCFF337SNY.bigWig released s3://encode-public/2017/06/29/ce7384ec-0215-404d-a869-00fb868e586b/ENCFF337SNY.bigWig Lab custom dm3 archived ENCFF877MQU bigWig bigWig read-depth normalized signal dm3 ENCSR130CHN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF436TJC/ 15243541 Kevin White, UChicago a184944324ed51108d069a240159dd3a https://www.encodeproject.org/files/ENCFF877MQU/@@download/ENCFF877MQU.bigWig released s3://encode-public/2017/06/29/a56a3da9-aa36-4a30-98c7-9db176ae65ac/ENCFF877MQU.bigWig Lab custom dm3 archived ENCFF576JKO bigWig bigWig read-depth normalized signal dm6 ENCSR130CHN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF132GBG/ 17392648 Kevin White, UChicago fc15066afacdf8a6e3c17db4468010e3 https://www.encodeproject.org/files/ENCFF576JKO/@@download/ENCFF576JKO.bigWig released s3://encode-public/2017/06/30/0b2e0af8-95ca-4c3a-8387-4a996fa7000f/ENCFF576JKO.bigWig Lab custom dm6 released ENCFF116VTT bigWig bigWig signal of unique reads dm6 ENCSR130CHN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF132GBG/ 17476667 Kevin White, UChicago bdcf69630919cbc8f847e84817f40a96 https://www.encodeproject.org/files/ENCFF116VTT/@@download/ENCFF116VTT.bigWig released s3://encode-public/2017/06/30/2feb41a9-af5a-469c-ab3c-345dc6ae3262/ENCFF116VTT.bigWig Lab custom dm6 released ENCFF000VPI fastq fastq reads ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 822862347 Michael Snyder, Stanford 6a1a2cc75d61501b174af1078d177be8 SRA:SRR6213874 https://www.encodeproject.org/files/ENCFF000VPI/@@download/ENCFF000VPI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/07/01/3238e758-9a7b-43d1-b89d-708f155a6759/ENCFF000VPI.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF000VPP bam bam alignments hg19 ENCSR496AXR Control ChIP-seq EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 32 1006604744 Michael Snyder, Stanford e3c1b8fa9b83cb181082decea3ed5c4d https://www.encodeproject.org/files/ENCFF000VPP/@@download/ENCFF000VPP.bam archived s3://encode-public/2012/07/01/3b2117b5-fa6e-4f32-8d9e-92d29309b197/ENCFF000VPP.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF000VPN bigWig bigWig signal hg19 ENCSR496AXR Control ChIP-seq EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 377860810 Michael Snyder, Stanford 11e22d2810dc38cb1c9dcd5c65968731 https://www.encodeproject.org/files/ENCFF000VPN/@@download/ENCFF000VPN.bigWig archived s3://encode-public/2012/07/01/7d87ca4e-7221-461e-b546-8f4c0577891e/ENCFF000VPN.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF000VPK fastq fastq reads ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 single-ended 1024990089 Michael Snyder, Stanford cd44c9e8a9e13eb4f7ceb4d10e72167a SRA:SRR6213873 https://www.encodeproject.org/files/ENCFF000VPK/@@download/ENCFF000VPK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/07/01/b8a5bc53-c876-42b2-acbe-5773d43ba018/ENCFF000VPK.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF051WWL bam bam unfiltered alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000VPI/, /files/ENCFF643CGH/ 930088166 ENCODE Processing Pipeline 05fdd032eac7a5e27fd77a2e1d198329 https://www.encodeproject.org/files/ENCFF051WWL/@@download/ENCFF051WWL.bam released s3://encode-public/2016/10/26/c24bdba8-3c64-4259-bc74-17014cbffa6b/ENCFF051WWL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF751VDM bam bam unfiltered alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF000VPK/, /files/ENCFF643CGH/ 1176745447 ENCODE Processing Pipeline 1bdc147b798e8a6b8030619d46959fbf https://www.encodeproject.org/files/ENCFF751VDM/@@download/ENCFF751VDM.bam released s3://encode-public/2016/10/26/245d0977-e00d-4a41-a505-b5181e5b39f0/ENCFF751VDM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF857MFM bam bam alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000VPI/, /files/ENCFF643CGH/ 587436101 ENCODE Processing Pipeline 909190ed7142d6fd486f4cca61d4eeb8 https://www.encodeproject.org/files/ENCFF857MFM/@@download/ENCFF857MFM.bam released s3://encode-public/2016/10/26/280217ae-ac39-480f-bd27-cb729593e650/ENCFF857MFM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF777NWU bam bam alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF000VPK/, /files/ENCFF643CGH/ 792136475 ENCODE Processing Pipeline e780bc60b84c4c9dc538aa070f329457 https://www.encodeproject.org/files/ENCFF777NWU/@@download/ENCFF777NWU.bam released s3://encode-public/2016/10/26/1fe18a04-9423-4460-9c1f-9e48a49f46b1/ENCFF777NWU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF512WDI bam bam alignments hg19 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000VPI/, /files/ENCFF807MUK/ 587576299 ENCODE Processing Pipeline 32a484859c7eca73362874ad80e0b657 https://www.encodeproject.org/files/ENCFF512WDI/@@download/ENCFF512WDI.bam released s3://encode-public/2017/07/11/96359685-f89d-44e2-a58f-a70009eb59ef/ENCFF512WDI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF296BML bam bam alignments hg19 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF000VPK/, /files/ENCFF807MUK/ 792350322 ENCODE Processing Pipeline 24d771c960b3c2924540ef284f58e06e https://www.encodeproject.org/files/ENCFF296BML/@@download/ENCFF296BML.bam released s3://encode-public/2017/07/11/d48d224c-8140-4b2d-bd2e-20576078f175/ENCFF296BML.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF332ILN bam bam unfiltered alignments hg19 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000VPI/, /files/ENCFF807MUK/ 926017777 ENCODE Processing Pipeline 190a6f13670849cc92413a908bd02c25 https://www.encodeproject.org/files/ENCFF332ILN/@@download/ENCFF332ILN.bam released s3://encode-public/2017/07/11/8167a4bb-db74-4bc7-b4e6-56a28026ecfd/ENCFF332ILN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF584XHS bam bam unfiltered alignments hg19 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF000VPK/, /files/ENCFF807MUK/ 1171219712 ENCODE Processing Pipeline 1f945f3067376b6ed6246677fe90e1df https://www.encodeproject.org/files/ENCFF584XHS/@@download/ENCFF584XHS.bam released s3://encode-public/2017/07/11/6ae765b1-cc90-4652-94e9-ba1c5e96208d/ENCFF584XHS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF682VRL bam bam alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF000VPK/, /files/ENCFF110MCL/ 871822871 ENCODE Processing Pipeline 3b9b0c17953fb6a45019b99cd4cdc539 https://www.encodeproject.org/files/ENCFF682VRL/@@download/ENCFF682VRL.bam released s3://encode-public/2020/09/03/b7393d16-021f-4d98-9955-d2a63dc5f114/ENCFF682VRL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF968ZQN bam bam alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000VPI/, /files/ENCFF110MCL/ 645699135 ENCODE Processing Pipeline e9a80002a21420db672fbf995fea70f0 https://www.encodeproject.org/files/ENCFF968ZQN/@@download/ENCFF968ZQN.bam released s3://encode-public/2020/09/03/0f30d3f0-0627-4276-b45d-baa01dea11be/ENCFF968ZQN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF612HHD bam bam unfiltered alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000VPI/, /files/ENCFF110MCL/ 905879695 ENCODE Processing Pipeline f17f6151f6f4dc3acacf4ea2fdfc9764 https://www.encodeproject.org/files/ENCFF612HHD/@@download/ENCFF612HHD.bam released s3://encode-public/2020/09/03/cdc64ccd-c123-4b10-9f6c-e1a789dcc45f/ENCFF612HHD.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF204EOL bam bam unfiltered alignments GRCh38 ENCSR496AXR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF000VPK/, /files/ENCFF110MCL/ 1147433048 ENCODE Processing Pipeline e8cf9387233fcc5a9a1f355ecc2f0d7e https://www.encodeproject.org/files/ENCFF204EOL/@@download/ENCFF204EOL.bam released s3://encode-public/2020/09/03/e39ec348-4441-4bb3-909b-4c145d17b0b0/ENCFF204EOL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF024JXT fastq fastq reads ENCSR296KEA Control ChIP-seq /fly-donors/ENCDO520NWT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42930/'], '@type': ['Target', 'Item'], 'name': 'CG13624-dmelanogaster', 'label': 'CG13624', '@id': '/targets/CG13624-dmelanogaster/', 'title': 'CG13624 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b187667-dd4e-4a06-bba8-dae74624e147', 'status': 'released'} dm3 3R 20359210 20451034 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 634005131 Kevin White, UChicago 68eb94256a481c08b9430c7c6153cd13 https://www.encodeproject.org/files/ENCFF024JXT/@@download/ENCFF024JXT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/0a8800cb-6cb5-4713-bb55-dfc3f6ed6cfe/ENCFF024JXT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF436XZF bam bam alignments dm3 ENCSR296KEA Control ChIP-seq /fly-donors/ENCDO520NWT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42930/'], '@type': ['Target', 'Item'], 'name': 'CG13624-dmelanogaster', 'label': 'CG13624', '@id': '/targets/CG13624-dmelanogaster/', 'title': 'CG13624 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b187667-dd4e-4a06-bba8-dae74624e147', 'status': 'released'} dm3 3R 20359210 20451034 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF024JXT/ 937976492 Kevin White, UChicago 5ec6b0bd800d8e7c085e907b011ecd0f https://www.encodeproject.org/files/ENCFF436XZF/@@download/ENCFF436XZF.bam released s3://encode-public/2015/08/03/954c0fbf-b54a-4a1c-b101-75dfcd8bb076/ENCFF436XZF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF776ZPG bigWig bigWig read-depth normalized signal dm3 ENCSR296KEA Control ChIP-seq /fly-donors/ENCDO520NWT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42930/'], '@type': ['Target', 'Item'], 'name': 'CG13624-dmelanogaster', 'label': 'CG13624', '@id': '/targets/CG13624-dmelanogaster/', 'title': 'CG13624 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b187667-dd4e-4a06-bba8-dae74624e147', 'status': 'released'} dm3 3R 20359210 20451034 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF436XZF/ 15401704 Kevin White, UChicago edfef948382719e881b020b18c2f9ee0 https://www.encodeproject.org/files/ENCFF776ZPG/@@download/ENCFF776ZPG.bigWig released s3://encode-public/2015/10/05/b75ffa28-967a-464c-9aaf-0ff77e15f238/ENCFF776ZPG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF384VWW bigWig bigWig signal of unique reads dm3 ENCSR296KEA Control ChIP-seq /fly-donors/ENCDO520NWT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42930/'], '@type': ['Target', 'Item'], 'name': 'CG13624-dmelanogaster', 'label': 'CG13624', '@id': '/targets/CG13624-dmelanogaster/', 'title': 'CG13624 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b187667-dd4e-4a06-bba8-dae74624e147', 'status': 'released'} dm3 3R 20359210 20451034 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF436XZF/ 15379514 Kevin White, UChicago e7cc6befcdce2d00527f38e34a6af1b7 https://www.encodeproject.org/files/ENCFF384VWW/@@download/ENCFF384VWW.bigWig released s3://encode-public/2015/10/05/a5c5f8f7-0139-4811-80ea-c5625489d714/ENCFF384VWW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF429JTJ bam bam alignments dm6 ENCSR296KEA Control ChIP-seq /fly-donors/ENCDO520NWT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42930/'], '@type': ['Target', 'Item'], 'name': 'CG13624-dmelanogaster', 'label': 'CG13624', '@id': '/targets/CG13624-dmelanogaster/', 'title': 'CG13624 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b187667-dd4e-4a06-bba8-dae74624e147', 'status': 'released'} dm3 3R 20359210 20451034 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF024JXT/ 935568466 Kevin White, UChicago d38f73f209642e402f54d6e75b8f29ce https://www.encodeproject.org/files/ENCFF429JTJ/@@download/ENCFF429JTJ.bam released s3://encode-public/2016/04/20/0da6c979-130e-4ad7-95a7-cd139e8039ba/ENCFF429JTJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF496OQB bigWig bigWig read-depth normalized signal dm6 ENCSR296KEA Control ChIP-seq /fly-donors/ENCDO520NWT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42930/'], '@type': ['Target', 'Item'], 'name': 'CG13624-dmelanogaster', 'label': 'CG13624', '@id': '/targets/CG13624-dmelanogaster/', 'title': 'CG13624 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b187667-dd4e-4a06-bba8-dae74624e147', 'status': 'released'} dm3 3R 20359210 20451034 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF429JTJ/ 17502097 Kevin White, UChicago d3416297d98dc42db1fa8de1c78b5a9c https://www.encodeproject.org/files/ENCFF496OQB/@@download/ENCFF496OQB.bigWig released s3://encode-public/2016/06/21/5e58055a-5205-429f-9f98-76cb434a2529/ENCFF496OQB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF854DBL bigWig bigWig signal of unique reads dm6 ENCSR296KEA Control ChIP-seq /fly-donors/ENCDO520NWT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42930/'], '@type': ['Target', 'Item'], 'name': 'CG13624-dmelanogaster', 'label': 'CG13624', '@id': '/targets/CG13624-dmelanogaster/', 'title': 'CG13624 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b187667-dd4e-4a06-bba8-dae74624e147', 'status': 'released'} dm3 3R 20359210 20451034 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF429JTJ/ 17469961 Kevin White, UChicago e79e7dc0633fc40f9a3182b94227e4c2 https://www.encodeproject.org/files/ENCFF854DBL/@@download/ENCFF854DBL.bigWig released s3://encode-public/2016/06/21/627163bf-3cf1-49cc-a180-da8b4eca6300/ENCFF854DBL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF601FUG fastq fastq reads ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 155509551 Michael Snyder, Stanford b9e145d01ec7f6d7d0bc2abceb20cbd9 https://www.encodeproject.org/files/ENCFF601FUG/@@download/ENCFF601FUG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/69985300-a064-42c0-bd3c-671663af2ddf/ENCFF601FUG.fastq.gz ENCFF185DWB fastq fastq reads ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 106842088 Michael Snyder, Stanford 53dd35747b333b138dab94963f2ca44b https://www.encodeproject.org/files/ENCFF185DWB/@@download/ENCFF185DWB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/7fe07009-70b8-4872-a4a0-ef84f180a761/ENCFF185DWB.fastq.gz ENCFF737CVD bam bam alignments ce10 ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF601FUG/, /files/ENCFF185DWB/, /files/ENCFF987UMF/ 343103639 Kevin White, UChicago b9981952096bfca3b2cd1fd429e80b1f https://www.encodeproject.org/files/ENCFF737CVD/@@download/ENCFF737CVD.bam released s3://encode-public/2018/01/09/8753f07b-1c18-4fef-b965-27ec702f6565/ENCFF737CVD.bam Lab custom ce10 archived ENCFF960HTO bam bam alignments ce11 ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF601FUG/, /files/ENCFF185DWB/, /files/ENCFF586MOL/ 343482217 Kevin White, UChicago a23e24ad2a726643631e4446528fb12c https://www.encodeproject.org/files/ENCFF960HTO/@@download/ENCFF960HTO.bam released s3://encode-public/2018/01/09/7d0ca797-bad7-4f5e-b35f-0f816f7b3160/ENCFF960HTO.bam Lab custom ce11 released ENCFF761OSX bigWig bigWig read-depth normalized signal ce10 ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF737CVD/ 9993355 Kevin White, UChicago b5160658dd8b7eeddd7afd43eac4fbdf https://www.encodeproject.org/files/ENCFF761OSX/@@download/ENCFF761OSX.bigWig released s3://encode-public/2018/01/09/61f54e30-5dae-4191-bdfd-cf85d57e55c8/ENCFF761OSX.bigWig Lab custom ce10 archived ENCFF653AFX bigWig bigWig signal of unique reads ce10 ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF737CVD/ 10053418 Kevin White, UChicago fa8fbd197a40a0e1435b870862761495 https://www.encodeproject.org/files/ENCFF653AFX/@@download/ENCFF653AFX.bigWig released s3://encode-public/2018/01/09/79e060d3-85a6-4a66-b9a8-08ad988abd25/ENCFF653AFX.bigWig Lab custom ce10 archived ENCFF094LZA bigWig bigWig read-depth normalized signal ce11 ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF960HTO/ 9987672 Kevin White, UChicago b9afb31a135f6bd352cac0d99471ceea https://www.encodeproject.org/files/ENCFF094LZA/@@download/ENCFF094LZA.bigWig released s3://encode-public/2018/01/09/58630e8f-2f01-4eef-932b-199baa7cb38f/ENCFF094LZA.bigWig Lab custom ce11 released ENCFF366TRF bigWig bigWig signal of unique reads ce11 ENCSR959KFB Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF960HTO/ 10051536 Kevin White, UChicago ca55cadc8975e40ba5b197e243225369 https://www.encodeproject.org/files/ENCFF366TRF/@@download/ENCFF366TRF.bigWig released s3://encode-public/2018/01/09/8be5737b-fa61-4ee3-ab89-2adc43e69bed/ENCFF366TRF.bigWig Lab custom ce11 released ENCFF743FKP fastq fastq reads ENCSR756ESY Control ChIP-seq /worm-donors/ENCDO752TIF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 106599074 Michael Snyder, Stanford 2a329fc7417e89ef485b61dd2f5390f8 https://www.encodeproject.org/files/ENCFF743FKP/@@download/ENCFF743FKP.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/6fdfe9cd-2c6e-485e-a2a0-b8517b1b5203/ENCFF743FKP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF494VBT fastq fastq reads ENCSR601HSS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1849414864 Richard Myers, HAIB 798c8f8a3fd843de49ebee034ab78294 SRA:SRR5111856 https://www.encodeproject.org/files/ENCFF494VBT/@@download/ENCFF494VBT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/9b658d12-d04a-4a73-9feb-e6f9e1f834f6/ENCFF494VBT.fastq.gz ENCFF040OST bam bam unfiltered alignments mm10 ENCSR601HSS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF494VBT/ 2017437642 ENCODE Processing Pipeline 749840e07c7b95a69ed7329ff8649118 https://www.encodeproject.org/files/ENCFF040OST/@@download/ENCFF040OST.bam released s3://encode-public/2016/05/20/5b4d111b-2a87-460e-aa35-781fac020c4f/ENCFF040OST.bam ENCODE3 mm10 archived ENCFF574XMX bam bam alignments mm10 ENCSR601HSS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF494VBT/ 1589262723 ENCODE Processing Pipeline 6584502fa3d3e4490920fa5d4cd5ac17 https://www.encodeproject.org/files/ENCFF574XMX/@@download/ENCFF574XMX.bam released s3://encode-public/2016/05/20/ff7c933a-e65b-4b80-835e-fe2115a2b000/ENCFF574XMX.bam ENCODE3 mm10 archived ENCFF323RID bam bam unfiltered alignments mm10 ENCSR601HSS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF494VBT/, /files/ENCFF309GLL/ 1995017619 ENCODE Processing Pipeline 71d7d8d548a5e7d6e1383957f6771277 https://www.encodeproject.org/files/ENCFF323RID/@@download/ENCFF323RID.bam released s3://encode-public/2020/10/08/0fa84070-741f-4e98-83cc-de1981891ce4/ENCFF323RID.bam ENCODE4 v1.5.1 mm10 released ENCFF326IKX bam bam alignments mm10 ENCSR601HSS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF494VBT/, /files/ENCFF309GLL/ 1647133746 ENCODE Processing Pipeline 65b24adaebf4320b46ffd37374f014d5 https://www.encodeproject.org/files/ENCFF326IKX/@@download/ENCFF326IKX.bam released s3://encode-public/2020/10/08/3e0a5fd7-074d-43e4-8a26-1c4255b1fea6/ENCFF326IKX.bam ENCODE4 v1.5.1 mm10 released ENCFF700XDG fastq fastq reads ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 231051540 Michael Snyder, Stanford 943888eb4b6c9a9fd65a3ec43fc2a56d https://www.encodeproject.org/files/ENCFF700XDG/@@download/ENCFF700XDG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/ec044ad5-3358-4fb3-8ae6-e63a08bc8ad4/ENCFF700XDG.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF446PUC fastq fastq reads ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 196850256 Michael Snyder, Stanford b00bdebcee60a23a5b0bd0a80548e86a https://www.encodeproject.org/files/ENCFF446PUC/@@download/ENCFF446PUC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/2d107c65-749b-41f5-8b28-553009327355/ENCFF446PUC.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF342EYS fastq fastq reads ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 212094151 Michael Snyder, Stanford 9233e8dfae9c0b6ba3d7bdf256884cff https://www.encodeproject.org/files/ENCFF342EYS/@@download/ENCFF342EYS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/a77008f9-9682-4dbf-97c5-42b893b2266d/ENCFF342EYS.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF699PVU bam bam alignments ce10 ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF446PUC/, /files/ENCFF700XDG/, /files/ENCFF342EYS/, /files/ENCFF987UMF/ 829569347 Kevin White, UChicago 4c26a6498577fff3ed3d1bda327e7e87 https://www.encodeproject.org/files/ENCFF699PVU/@@download/ENCFF699PVU.bam released s3://encode-public/2017/04/27/197c659d-e950-44ca-8a1b-43e23307626c/ENCFF699PVU.bam Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF529ATO bam bam alignments ce11 ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF446PUC/, /files/ENCFF700XDG/, /files/ENCFF342EYS/, /files/ENCFF586MOL/ 830372272 Kevin White, UChicago 1c4b0f58bb81059c43709022767fe3f9 https://www.encodeproject.org/files/ENCFF529ATO/@@download/ENCFF529ATO.bam released s3://encode-public/2017/04/27/7525f515-8bec-492a-876a-8018f288ae00/ENCFF529ATO.bam Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF530FJP bigWig bigWig signal of unique reads ce10 ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF699PVU/ 10000710 Kevin White, UChicago ed155d1a84311fc0786a37718bd9ac3e https://www.encodeproject.org/files/ENCFF530FJP/@@download/ENCFF530FJP.bigWig released s3://encode-public/2017/04/29/e9b19414-bc86-4cbc-96d8-fa0bde9fc0f1/ENCFF530FJP.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF101LSD bigWig bigWig read-depth normalized signal ce10 ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF699PVU/ 9997741 Kevin White, UChicago 7e87de374942569566257ccb6e4d964a https://www.encodeproject.org/files/ENCFF101LSD/@@download/ENCFF101LSD.bigWig released s3://encode-public/2017/04/29/1589844a-3786-4daa-a837-a9d23fed3198/ENCFF101LSD.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF257DXP bigWig bigWig read-depth normalized signal ce11 ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF529ATO/ 9990352 Kevin White, UChicago 28504b270064119dfa4d9895500b0ad0 https://www.encodeproject.org/files/ENCFF257DXP/@@download/ENCFF257DXP.bigWig released s3://encode-public/2017/04/29/b97be420-454e-4b62-9cde-90d963231076/ENCFF257DXP.bigWig Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF705OKN bigWig bigWig signal of unique reads ce11 ENCSR453EAC Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF529ATO/ 9996691 Kevin White, UChicago 701f0d654f5c4e006c9ebff77fea7fcf https://www.encodeproject.org/files/ENCFF705OKN/@@download/ENCFF705OKN.bigWig released s3://encode-public/2017/04/29/2b2464e6-fa34-4d82-83a8-f274869b6189/ENCFF705OKN.bigWig Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF110BTD fastq fastq reads ENCSR513RYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 959703421 Kevin White, UChicago efba704b1563faf777b990984eb5642e https://www.encodeproject.org/files/ENCFF110BTD/@@download/ENCFF110BTD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/09/01/46ba28a1-f7ef-4663-af74-cccfa643dd28/ENCFF110BTD.fastq.gz ENCFF180OPH bam bam alignments dm3 ENCSR513RYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF110BTD/ 1212895851 Kevin White, UChicago 8e7cac72f6f57be4dc26c280f536f840 https://www.encodeproject.org/files/ENCFF180OPH/@@download/ENCFF180OPH.bam released s3://encode-public/2017/06/19/0769da6f-73dc-4017-ace6-b7221edffad3/ENCFF180OPH.bam Lab custom dm3 archived ENCFF463RYF bam bam alignments dm6 ENCSR513RYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF110BTD/ 1200939723 Kevin White, UChicago e3aee657760fcc355903d2fa093235d9 https://www.encodeproject.org/files/ENCFF463RYF/@@download/ENCFF463RYF.bam released s3://encode-public/2017/06/28/974a9010-3b64-42d3-b422-7daddeb18d30/ENCFF463RYF.bam Lab custom dm6 released ENCFF656ZNK bigWig bigWig signal of unique reads dm3 ENCSR513RYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF180OPH/ 15571172 Kevin White, UChicago 0c5a56cdc02d7397ab7970de8399b195 https://www.encodeproject.org/files/ENCFF656ZNK/@@download/ENCFF656ZNK.bigWig released s3://encode-public/2017/06/29/38bd64da-9f33-4d02-8760-b8447e90cd25/ENCFF656ZNK.bigWig Lab custom dm3 archived ENCFF117YAN bigWig bigWig read-depth normalized signal dm3 ENCSR513RYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF180OPH/ 15576860 Kevin White, UChicago eb10b0ccce101dc34cb3e4791a7e043b https://www.encodeproject.org/files/ENCFF117YAN/@@download/ENCFF117YAN.bigWig released s3://encode-public/2017/06/29/21e102a3-7483-481d-8a40-a42e40d4c64a/ENCFF117YAN.bigWig Lab custom dm3 archived ENCFF462SES bigWig bigWig read-depth normalized signal dm6 ENCSR513RYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF463RYF/ 17652490 Kevin White, UChicago 1550198d3bbf4930bf2d8e2627d013df https://www.encodeproject.org/files/ENCFF462SES/@@download/ENCFF462SES.bigWig released s3://encode-public/2017/06/30/175a2bac-ac6e-4c92-a337-206add0f3ea6/ENCFF462SES.bigWig Lab custom dm6 released ENCFF618YLO bigWig bigWig signal of unique reads dm6 ENCSR513RYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF463RYF/ 17655485 Kevin White, UChicago 1429e61deeec55ef1d4b03ad2a46780d https://www.encodeproject.org/files/ENCFF618YLO/@@download/ENCFF618YLO.bigWig released s3://encode-public/2017/06/30/263f70cd-6f58-4904-b35a-76bb9cf62a48/ENCFF618YLO.bigWig Lab custom dm6 released ENCFF963YDE fastq fastq reads ENCSR260YDC Control ChIP-seq /fly-donors/ENCDO933ZTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41627/'], '@type': ['Target', 'Item'], 'name': 'Su(var)3-7-dmelanogaster', 'label': 'Su(var)3-7', '@id': '/targets/Su(var)3-7-dmelanogaster/', 'title': 'Su(var)3-7 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8429ed7c-c689-4e0e-b804-f3bdccd59b0c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1044407231 Kevin White, UChicago 1c6d5371c4d7d9b07453f4207a51f388 https://www.encodeproject.org/files/ENCFF963YDE/@@download/ENCFF963YDE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/103d0eca-2abe-47bb-a9db-75c14687133a/ENCFF963YDE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF317YMT bam bam alignments dm3 ENCSR260YDC Control ChIP-seq /fly-donors/ENCDO933ZTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41627/'], '@type': ['Target', 'Item'], 'name': 'Su(var)3-7-dmelanogaster', 'label': 'Su(var)3-7', '@id': '/targets/Su(var)3-7-dmelanogaster/', 'title': 'Su(var)3-7 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8429ed7c-c689-4e0e-b804-f3bdccd59b0c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF963YDE/ 1507856181 Kevin White, UChicago e7b873ed55da0b95b594ab8590f38e70 https://www.encodeproject.org/files/ENCFF317YMT/@@download/ENCFF317YMT.bam released s3://encode-public/2015/08/03/1ab335e2-4b6e-4de6-9d92-7461fb2846d2/ENCFF317YMT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF518MVP bigWig bigWig read-depth normalized signal dm3 ENCSR260YDC Control ChIP-seq /fly-donors/ENCDO933ZTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41627/'], '@type': ['Target', 'Item'], 'name': 'Su(var)3-7-dmelanogaster', 'label': 'Su(var)3-7', '@id': '/targets/Su(var)3-7-dmelanogaster/', 'title': 'Su(var)3-7 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8429ed7c-c689-4e0e-b804-f3bdccd59b0c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF317YMT/ 15553297 Kevin White, UChicago a4cee1286ab5ef27a1efce37a4c5cda0 https://www.encodeproject.org/files/ENCFF518MVP/@@download/ENCFF518MVP.bigWig released s3://encode-public/2015/10/06/10088df1-8632-4e45-8cff-0f37a69922f9/ENCFF518MVP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF975DHY bigWig bigWig signal of unique reads dm3 ENCSR260YDC Control ChIP-seq /fly-donors/ENCDO933ZTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41627/'], '@type': ['Target', 'Item'], 'name': 'Su(var)3-7-dmelanogaster', 'label': 'Su(var)3-7', '@id': '/targets/Su(var)3-7-dmelanogaster/', 'title': 'Su(var)3-7 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8429ed7c-c689-4e0e-b804-f3bdccd59b0c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF317YMT/ 15516577 Kevin White, UChicago efc31bd18b0f96259cc5097093349e91 https://www.encodeproject.org/files/ENCFF975DHY/@@download/ENCFF975DHY.bigWig released s3://encode-public/2015/10/06/af14b3a6-a155-42d5-bc4b-ff640ffb6f22/ENCFF975DHY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF700KOA bam bam alignments dm6 ENCSR260YDC Control ChIP-seq /fly-donors/ENCDO933ZTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41627/'], '@type': ['Target', 'Item'], 'name': 'Su(var)3-7-dmelanogaster', 'label': 'Su(var)3-7', '@id': '/targets/Su(var)3-7-dmelanogaster/', 'title': 'Su(var)3-7 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8429ed7c-c689-4e0e-b804-f3bdccd59b0c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF963YDE/ 1501616469 Kevin White, UChicago 67e6d13ce16f231832b6634f8fd6dd9c https://www.encodeproject.org/files/ENCFF700KOA/@@download/ENCFF700KOA.bam released s3://encode-public/2016/04/22/8b8a8412-56aa-4623-a2e8-1817e1446ce0/ENCFF700KOA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF343MGN bigWig bigWig signal of unique reads dm6 ENCSR260YDC Control ChIP-seq /fly-donors/ENCDO933ZTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41627/'], '@type': ['Target', 'Item'], 'name': 'Su(var)3-7-dmelanogaster', 'label': 'Su(var)3-7', '@id': '/targets/Su(var)3-7-dmelanogaster/', 'title': 'Su(var)3-7 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8429ed7c-c689-4e0e-b804-f3bdccd59b0c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF700KOA/ 17598709 Kevin White, UChicago 0ef9042d75969aaf348630936e15233c https://www.encodeproject.org/files/ENCFF343MGN/@@download/ENCFF343MGN.bigWig released s3://encode-public/2016/06/20/caf7b58e-532e-4ca0-af20-33b2d2868a20/ENCFF343MGN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF994HXZ bigWig bigWig read-depth normalized signal dm6 ENCSR260YDC Control ChIP-seq /fly-donors/ENCDO933ZTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41627/'], '@type': ['Target', 'Item'], 'name': 'Su(var)3-7-dmelanogaster', 'label': 'Su(var)3-7', '@id': '/targets/Su(var)3-7-dmelanogaster/', 'title': 'Su(var)3-7 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8429ed7c-c689-4e0e-b804-f3bdccd59b0c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF700KOA/ 17669130 Kevin White, UChicago b4aead1b2bde36a58a35a5a0359f47c3 https://www.encodeproject.org/files/ENCFF994HXZ/@@download/ENCFF994HXZ.bigWig released s3://encode-public/2016/06/20/1069ce60-4fbd-467a-bb26-591ec1323d19/ENCFF994HXZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF979RAP fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 494459721 Bradley Bernstein, Broad e378bd9efc90328dfc364dd31dd31dfa SRA:SRR16806886 https://www.encodeproject.org/files/ENCFF979RAP/@@download/ENCFF979RAP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/248412d1-0c21-4a3f-a0b6-ff45160309f5/ENCFF979RAP.fastq.gz ENCFF643FSG fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 492604744 Bradley Bernstein, Broad 80f734a42adff407d0ca3ee6ca733ed9 SRA:SRR16806887 https://www.encodeproject.org/files/ENCFF643FSG/@@download/ENCFF643FSG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/515cf6d8-4dfe-4b24-b7c2-30270502babf/ENCFF643FSG.fastq.gz ENCFF029ZXI fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 425493044 Bradley Bernstein, Broad 31e5b08a9c6f1b0da56915b46ef17cf0 SRA:SRR16806890 https://www.encodeproject.org/files/ENCFF029ZXI/@@download/ENCFF029ZXI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/660c5591-9057-4000-ab87-cd8a20a19166/ENCFF029ZXI.fastq.gz ENCFF650MAG fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 490206843 Bradley Bernstein, Broad 935ce5fc1bdc6f1542ac192c4a59d809 SRA:SRR16806888 https://www.encodeproject.org/files/ENCFF650MAG/@@download/ENCFF650MAG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/78e86a28-9d9f-471a-830a-b1e2833be99c/ENCFF650MAG.fastq.gz ENCFF169NSD fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 489486331 Bradley Bernstein, Broad 0da8eae92d2ef0ead8ec8eb99d049f28 SRA:SRR16806889 https://www.encodeproject.org/files/ENCFF169NSD/@@download/ENCFF169NSD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/b4b1849d-9807-4568-91dd-dfe6fdd07d08/ENCFF169NSD.fastq.gz ENCFF284AIQ fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 424129394 Bradley Bernstein, Broad 6d6e41fc6e2e20cbbf921b1c25a96a2d SRA:SRR16806891 https://www.encodeproject.org/files/ENCFF284AIQ/@@download/ENCFF284AIQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/c77fc552-b164-4697-97aa-70c67837bb1e/ENCFF284AIQ.fastq.gz ENCFF771DTY fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 421277980 Bradley Bernstein, Broad 5c33d09da13803f770c2ca073bac0f99 SRA:SRR16806892 https://www.encodeproject.org/files/ENCFF771DTY/@@download/ENCFF771DTY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/bae47cf7-beb4-4a24-8f92-485dc311a3e0/ENCFF771DTY.fastq.gz ENCFF504BQS fastq fastq reads ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 422452408 Bradley Bernstein, Broad 13ad45e866e0b63d475d98dad25adbd2 SRA:SRR16806893 https://www.encodeproject.org/files/ENCFF504BQS/@@download/ENCFF504BQS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/394a99da-6590-4ec3-8dac-8d1fa6606b44/ENCFF504BQS.fastq.gz ENCFF644FSL bam bam unfiltered alignments GRCh38 ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643FSG/, /files/ENCFF504BQS/, /files/ENCFF771DTY/, /files/ENCFF110MCL/, /files/ENCFF284AIQ/, /files/ENCFF650MAG/, /files/ENCFF979RAP/, /files/ENCFF169NSD/, /files/ENCFF029ZXI/ 3567742911 ENCODE Processing Pipeline e898c510e632e6dfc09da1bc150b1f51 https://www.encodeproject.org/files/ENCFF644FSL/@@download/ENCFF644FSL.bam released s3://encode-public/2021/06/18/002b12be-9b79-46e4-b622-30232a2e6c05/ENCFF644FSL.bam ENCODE4 v1.8.0 GRCh38 released ENCFF858KWR bam bam alignments GRCh38 ENCSR119AVG Control ChIP-seq /human-donors/ENCDO186XRB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643FSG/, /files/ENCFF504BQS/, /files/ENCFF771DTY/, /files/ENCFF110MCL/, /files/ENCFF284AIQ/, /files/ENCFF650MAG/, /files/ENCFF979RAP/, /files/ENCFF169NSD/, /files/ENCFF029ZXI/ 3051431628 ENCODE Processing Pipeline de1f8dc1dd5735848f3486e66fc0c71b https://www.encodeproject.org/files/ENCFF858KWR/@@download/ENCFF858KWR.bam released s3://encode-public/2021/06/18/bc431626-f650-4a20-bef3-80d280b3643b/ENCFF858KWR.bam ENCODE4 v1.8.0 GRCh38 released ENCFF591IGX fastq fastq reads ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 130925074 Michael Snyder, Stanford a14083097b52a9f94935c5feb61255e7 https://www.encodeproject.org/files/ENCFF591IGX/@@download/ENCFF591IGX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/656a0261-d7f0-4d6b-9994-1ee5d9b6d483/ENCFF591IGX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF454ZSV fastq fastq reads ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 149762390 Michael Snyder, Stanford 8026d8f940260044fe496fbc377e0385 https://www.encodeproject.org/files/ENCFF454ZSV/@@download/ENCFF454ZSV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/515279dd-18f3-4c45-a191-4a85c7c50b75/ENCFF454ZSV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF410GRZ bam bam alignments ce10 ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF591IGX/, /files/ENCFF454ZSV/, /files/ENCFF987UMF/ 356581864 Kevin White, UChicago dde882db7f8e6589152858df133c67ff https://www.encodeproject.org/files/ENCFF410GRZ/@@download/ENCFF410GRZ.bam released s3://encode-public/2016/10/18/2fb208fa-6a49-4d90-9d99-7e4e66c642b1/ENCFF410GRZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF814NWS bam bam alignments ce11 ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF591IGX/, /files/ENCFF454ZSV/, /files/ENCFF586MOL/ 356936863 Kevin White, UChicago fea01e9980d1b671eb9a6efb35e085b3 https://www.encodeproject.org/files/ENCFF814NWS/@@download/ENCFF814NWS.bam released s3://encode-public/2016/10/19/7d3c9e3e-2d99-4cdb-81ff-ca0f768ffbe7/ENCFF814NWS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF453ZCC bigWig bigWig signal of unique reads ce10 ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF410GRZ/ 10061347 Kevin White, UChicago c4ebc8af38c985c2ce14d22cbbe492b6 https://www.encodeproject.org/files/ENCFF453ZCC/@@download/ENCFF453ZCC.bigWig released s3://encode-public/2016/10/20/3553c8ab-956d-4756-9844-f79af1cd869f/ENCFF453ZCC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF474VTL bigWig bigWig read-depth normalized signal ce10 ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF410GRZ/ 10000429 Kevin White, UChicago 5d65480d27fcdadfbf6bd5121b00ad00 https://www.encodeproject.org/files/ENCFF474VTL/@@download/ENCFF474VTL.bigWig released s3://encode-public/2016/10/20/57f008bb-5928-40eb-91d1-a6c66bab39dc/ENCFF474VTL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF945ZTK bigWig bigWig read-depth normalized signal ce11 ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF814NWS/ 9999410 Kevin White, UChicago fc9fc2edaa357a00a846f5cf33c7703c https://www.encodeproject.org/files/ENCFF945ZTK/@@download/ENCFF945ZTK.bigWig released s3://encode-public/2016/10/21/6c0cea81-8114-4342-b9c1-3df4abcfe85a/ENCFF945ZTK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF244JPD bigWig bigWig signal of unique reads ce11 ENCSR586FLU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF814NWS/ 10055643 Kevin White, UChicago 67be19dcd84d17b40f9e91824baa27ca https://www.encodeproject.org/files/ENCFF244JPD/@@download/ENCFF244JPD.bigWig released s3://encode-public/2016/10/21/1d64574e-c963-4495-af82-b25db7aac8ec/ENCFF244JPD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF717PIS fastq fastq reads ENCSR142DHZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA modENCODE >200 1 1_1 44 single-ended 1096196714 Kevin White, UChicago ce8f411d3f74753da35ab7e63c7005f3 https://www.encodeproject.org/files/ENCFF717PIS/@@download/ENCFF717PIS.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2016/08/23/a67c5f49-1d9a-431d-955d-ebd27736f4ac/ENCFF717PIS.fastq.gz lacking processed data ENCFF703ETZ fastq fastq reads ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 391692829 Michael Snyder, Stanford b08e42fb5367243f7ca2c8b8bc433409 https://www.encodeproject.org/files/ENCFF703ETZ/@@download/ENCFF703ETZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/620a3c2c-48c1-4550-8621-9dbc8439cea1/ENCFF703ETZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF927GFI fastq fastq reads ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 254368974 Michael Snyder, Stanford afb6b6d17fcb4db16a22d7edfa95e744 https://www.encodeproject.org/files/ENCFF927GFI/@@download/ENCFF927GFI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/5a2e9f7d-9a68-4ae3-ad87-e9582c80ebc8/ENCFF927GFI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF606RQK bam bam alignments ce10 ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF927GFI/, /files/ENCFF703ETZ/, /files/ENCFF987UMF/ 835797846 Kevin White, UChicago 5233f2c039069c0fcecee0dc9def7602 https://www.encodeproject.org/files/ENCFF606RQK/@@download/ENCFF606RQK.bam released s3://encode-public/2016/10/18/e1102e6a-84a3-40e5-a40b-75b42d9ba487/ENCFF606RQK.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF127GCE bam bam alignments ce11 ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF927GFI/, /files/ENCFF703ETZ/, /files/ENCFF586MOL/ 836722588 Kevin White, UChicago c214677545993c5d53eb767f049c3902 https://www.encodeproject.org/files/ENCFF127GCE/@@download/ENCFF127GCE.bam released s3://encode-public/2016/10/18/2e61e801-5735-4f16-a728-3e489fbfc216/ENCFF127GCE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF699TGH bigWig bigWig read-depth normalized signal ce10 ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF606RQK/ 9980096 Kevin White, UChicago b70d093a127ee2270262352f1e7978bc https://www.encodeproject.org/files/ENCFF699TGH/@@download/ENCFF699TGH.bigWig released s3://encode-public/2016/10/20/fbee8dad-9875-4af7-8ed6-cee2ea6350d6/ENCFF699TGH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF106GLV bigWig bigWig signal of unique reads ce10 ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF606RQK/ 9984895 Kevin White, UChicago 5c37ff4c7ceb534c269f995ab6f0375c https://www.encodeproject.org/files/ENCFF106GLV/@@download/ENCFF106GLV.bigWig released s3://encode-public/2016/10/20/90ba546e-a2d5-4f3b-8c40-28b1ca5f763d/ENCFF106GLV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF784KAG bigWig bigWig read-depth normalized signal ce11 ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF127GCE/ 9972903 Kevin White, UChicago 617da787aa280499ac7070735afc4a79 https://www.encodeproject.org/files/ENCFF784KAG/@@download/ENCFF784KAG.bigWig released s3://encode-public/2016/10/20/23eec38a-e490-457b-8f49-39cddc76f17a/ENCFF784KAG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF846EXL bigWig bigWig signal of unique reads ce11 ENCSR244KIK Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF127GCE/ 9979617 Kevin White, UChicago e9cac0d04e554f91b57863c3feb71e67 https://www.encodeproject.org/files/ENCFF846EXL/@@download/ENCFF846EXL.bigWig released s3://encode-public/2016/10/20/1aef5d0a-f7d5-4a74-b572-7a2269f0794a/ENCFF846EXL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF215OBC fastq fastq reads ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 183675172 Michael Snyder, Stanford 524a2c1fc50def3ccec8f6b7b58ec123 https://www.encodeproject.org/files/ENCFF215OBC/@@download/ENCFF215OBC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/44aa447c-0603-4229-bed7-160b43b118f7/ENCFF215OBC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF799VGW fastq fastq reads ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 142319435 Michael Snyder, Stanford 635ddf3d5e49b4ca8257944abade5c33 https://www.encodeproject.org/files/ENCFF799VGW/@@download/ENCFF799VGW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/9ef2375e-bfef-43f2-bb51-fd60346bdc3a/ENCFF799VGW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF602RNK bam bam alignments ce10 ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF215OBC/, /files/ENCFF799VGW/, /files/ENCFF987UMF/ 428093253 Kevin White, UChicago 4871b937937f4bfe131b1766c7d05391 https://www.encodeproject.org/files/ENCFF602RNK/@@download/ENCFF602RNK.bam released s3://encode-public/2016/10/18/db16afde-412d-422c-8a12-8b0d493520bd/ENCFF602RNK.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF394ZWM bam bam alignments ce11 ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF215OBC/, /files/ENCFF799VGW/, /files/ENCFF586MOL/ 428558211 Kevin White, UChicago e6949aa7673bbc18901fd40dd3af4bc9 https://www.encodeproject.org/files/ENCFF394ZWM/@@download/ENCFF394ZWM.bam released s3://encode-public/2016/10/19/332bfb1e-ca00-4e28-a983-aa7a9ce5da92/ENCFF394ZWM.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF939FXT bigWig bigWig read-depth normalized signal ce10 ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF602RNK/ 10071142 Kevin White, UChicago c0404ea7bf3beae13a474304367f7bc6 https://www.encodeproject.org/files/ENCFF939FXT/@@download/ENCFF939FXT.bigWig released s3://encode-public/2016/10/20/a0b4d2fc-2684-4668-996a-e6da90a599d7/ENCFF939FXT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF592DUY bigWig bigWig signal of unique reads ce10 ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF602RNK/ 10060850 Kevin White, UChicago adf2d65a608decbb3202bc956d93a077 https://www.encodeproject.org/files/ENCFF592DUY/@@download/ENCFF592DUY.bigWig released s3://encode-public/2016/10/20/ea01026c-5c5c-46ea-8350-b628238658c1/ENCFF592DUY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF897WNZ bigWig bigWig signal of unique reads ce11 ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF394ZWM/ 10057882 Kevin White, UChicago 17dac38e8318c370d7548087bed5b43e https://www.encodeproject.org/files/ENCFF897WNZ/@@download/ENCFF897WNZ.bigWig released s3://encode-public/2016/10/21/83e26261-d556-46e5-8230-3b607ab8ad30/ENCFF897WNZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF300IRI bigWig bigWig read-depth normalized signal ce11 ENCSR567JAU Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF394ZWM/ 10068116 Kevin White, UChicago 63038a3c2efdbe4fcd16e170b70024ea https://www.encodeproject.org/files/ENCFF300IRI/@@download/ENCFF300IRI.bigWig released s3://encode-public/2016/10/21/e9e75f3e-8c92-40df-a163-ba61d2c82fe2/ENCFF300IRI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF269FWC fastq fastq reads ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 149799712 Michael Snyder, Stanford 15d472f4d0422f204d407952f56993bb https://www.encodeproject.org/files/ENCFF269FWC/@@download/ENCFF269FWC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c7b9f445-c490-4b27-b845-6a08cc8b02cc/ENCFF269FWC.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF126WUW fastq fastq reads ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 117526786 Michael Snyder, Stanford ad5b2e2755d684b088e91a276f7c2360 https://www.encodeproject.org/files/ENCFF126WUW/@@download/ENCFF126WUW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/5f3e205c-74cc-4ebf-aebe-a6777263f372/ENCFF126WUW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF433FYU bam bam alignments ce10 ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF269FWC/, /files/ENCFF126WUW/, /files/ENCFF987UMF/ 350138542 Kevin White, UChicago bbb1bcd6bbb029a06d217429f9ba2860 https://www.encodeproject.org/files/ENCFF433FYU/@@download/ENCFF433FYU.bam released s3://encode-public/2016/10/18/50a3011a-2370-4b99-89bd-10c771837c25/ENCFF433FYU.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF806TPK bam bam alignments ce11 ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF269FWC/, /files/ENCFF126WUW/, /files/ENCFF586MOL/ 350548221 Kevin White, UChicago 5e3ea98a9595f8ecc8c0f1736874708c https://www.encodeproject.org/files/ENCFF806TPK/@@download/ENCFF806TPK.bam released s3://encode-public/2016/10/19/2fb14f62-e3a8-4b60-ace0-cca5f04b30e8/ENCFF806TPK.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF695GBL bigWig bigWig signal of unique reads ce10 ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF433FYU/ 10021511 Kevin White, UChicago 3177a24c045957b4b8390f277242c26d https://www.encodeproject.org/files/ENCFF695GBL/@@download/ENCFF695GBL.bigWig released s3://encode-public/2016/10/20/a69ded7a-f73a-4aa8-8e72-b0afd6eb0cc5/ENCFF695GBL.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF401TEZ bigWig bigWig read-depth normalized signal ce10 ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF433FYU/ 9963756 Kevin White, UChicago 4efa23fe756abd0446d51c892eddce73 https://www.encodeproject.org/files/ENCFF401TEZ/@@download/ENCFF401TEZ.bigWig released s3://encode-public/2016/10/20/bd5eb558-9e08-4435-8433-3aadba3b95af/ENCFF401TEZ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF761MTL bigWig bigWig read-depth normalized signal ce11 ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF806TPK/ 9957577 Kevin White, UChicago d9b4f957fcc2d7a9a7aa7d962da464b5 https://www.encodeproject.org/files/ENCFF761MTL/@@download/ENCFF761MTL.bigWig released s3://encode-public/2016/10/21/4d34c9d1-d5b1-4a1b-bdc9-ff6215ed817c/ENCFF761MTL.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF054XGT bigWig bigWig signal of unique reads ce11 ENCSR784WEG Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF806TPK/ 10016910 Kevin White, UChicago 316240d47c63f5fb88f3b178d36a00b3 https://www.encodeproject.org/files/ENCFF054XGT/@@download/ENCFF054XGT.bigWig released s3://encode-public/2016/10/21/31798e00-3809-4070-8035-40e77ff8ff8d/ENCFF054XGT.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF434QDD fastq fastq reads ENCSR927UOT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF186IUU/ 2364318950 Michael Snyder, Stanford 59b43bcc4eebbdb4d66363932e7a9a6f https://www.encodeproject.org/files/ENCFF434QDD/@@download/ENCFF434QDD.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/25dc7dfd-d539-4379-b3a4-e0a5fef5ea74/ENCFF434QDD.fastq.gz mild to moderate bottlenecking ENCFF186IUU fastq fastq reads ENCSR927UOT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF434QDD/ 2385527459 Michael Snyder, Stanford 2de68330656f9166aa0c40ad54ab631f https://www.encodeproject.org/files/ENCFF186IUU/@@download/ENCFF186IUU.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/c1043d41-6e0a-4929-949f-d9e1478f6c18/ENCFF186IUU.fastq.gz mild to moderate bottlenecking ENCFF121TKB bam bam unfiltered alignments GRCh38 ENCSR927UOT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF186IUU/, /files/ENCFF434QDD/ 4541589540 ENCODE Processing Pipeline 21798529c2b0bb5d22429816d19137d4 https://www.encodeproject.org/files/ENCFF121TKB/@@download/ENCFF121TKB.bam released s3://encode-public/2021/08/30/dc798f04-2e8b-4a96-ad24-48611bb9e305/ENCFF121TKB.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF488ARB bam bam alignments GRCh38 ENCSR927UOT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF186IUU/, /files/ENCFF434QDD/ 3480182806 ENCODE Processing Pipeline 939bf4cd0e17455cffcaf0a48ee00af9 https://www.encodeproject.org/files/ENCFF488ARB/@@download/ENCFF488ARB.bam released s3://encode-public/2021/08/30/684d194f-8d1d-42b5-9a57-3f258dddc763/ENCFF488ARB.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF638VJM fastq fastq reads ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 153194180 Michael Snyder, Stanford c5a4c08c70f3a98494146e9e0d23ab30 https://www.encodeproject.org/files/ENCFF638VJM/@@download/ENCFF638VJM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e1176b04-19d6-42bc-8077-e9e2c8bc1ae8/ENCFF638VJM.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF326MWV fastq fastq reads ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 152007448 Michael Snyder, Stanford af765acffb9bf8914214dff9b83cc91d https://www.encodeproject.org/files/ENCFF326MWV/@@download/ENCFF326MWV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/9c9a5ee5-ff6a-49db-952f-0eb4dbc876b2/ENCFF326MWV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF312EGT bam bam alignments ce10 ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF638VJM/, /files/ENCFF326MWV/, /files/ENCFF987UMF/ 403509842 Kevin White, UChicago b6dbead4db2e6a8610fceabe8da62d1b https://www.encodeproject.org/files/ENCFF312EGT/@@download/ENCFF312EGT.bam released s3://encode-public/2016/10/18/4ba3ba0b-5f89-430f-8df4-efee0f2ac94a/ENCFF312EGT.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF094UFX bam bam alignments ce11 ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF638VJM/, /files/ENCFF326MWV/, /files/ENCFF586MOL/ 403960033 Kevin White, UChicago 2a27f6586a99abc680cd292eea39df99 https://www.encodeproject.org/files/ENCFF094UFX/@@download/ENCFF094UFX.bam released s3://encode-public/2016/10/19/f3f67ab5-841c-4dea-b301-49e5f77a2db0/ENCFF094UFX.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF588WRG bigWig bigWig read-depth normalized signal ce10 ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF312EGT/ 9983955 Kevin White, UChicago 9950064f18b8cf062c26bebfdb4b209c https://www.encodeproject.org/files/ENCFF588WRG/@@download/ENCFF588WRG.bigWig released s3://encode-public/2016/10/20/5999be82-c0a3-4f3f-8eaf-c135038114cf/ENCFF588WRG.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF368DDR bigWig bigWig signal of unique reads ce10 ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF312EGT/ 10006945 Kevin White, UChicago 68376c6bf8a05371feef9212351a16d0 https://www.encodeproject.org/files/ENCFF368DDR/@@download/ENCFF368DDR.bigWig released s3://encode-public/2016/10/20/65246e05-9985-4e59-866f-e9b89df6f125/ENCFF368DDR.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF684AIH bigWig bigWig read-depth normalized signal ce11 ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF094UFX/ 9976855 Kevin White, UChicago 3b66d2efad896d4d2e7a4c55331bd4ab https://www.encodeproject.org/files/ENCFF684AIH/@@download/ENCFF684AIH.bigWig released s3://encode-public/2016/10/21/22eac4b7-999f-4875-9884-12116941e7a1/ENCFF684AIH.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF462XCQ bigWig bigWig signal of unique reads ce11 ENCSR788PJR Control ChIP-seq /worm-donors/ENCDO145GLO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191619/'], '@type': ['Target', 'Item'], 'name': 'ceh-28-celegans', 'label': 'ceh-28', '@id': '/targets/ceh-28-celegans/', 'title': 'ceh-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '888c5c0f-28f6-498a-838a-aeafa191a8d9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF094UFX/ 10002836 Kevin White, UChicago 72cfffcb87e8fbe6d2d5e42d85c062cd https://www.encodeproject.org/files/ENCFF462XCQ/@@download/ENCFF462XCQ.bigWig released s3://encode-public/2016/10/21/b4850979-b8a5-4d8e-ad5f-d4b10c4d07be/ENCFF462XCQ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF294JJG fastq fastq reads ENCSR195OCT Control ChIP-seq /fly-donors/ENCDO722NEY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41747/'], '@type': ['Target', 'Item'], 'name': 'NK7.1-dmelanogaster', 'label': 'NK7.1', '@id': '/targets/NK7.1-dmelanogaster/', 'title': 'NK7.1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '12a79ecb-cbab-4628-a8e5-4a598e25e26b', 'status': 'released'} dm3 3R 10123493 10223218 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 638652085 Kevin White, UChicago eea3b9979318d7de1d0b454a0e1ffcd1 https://www.encodeproject.org/files/ENCFF294JJG/@@download/ENCFF294JJG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/a40d56e2-e5f2-43dc-9f41-9b8b30efbf9e/ENCFF294JJG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF093ZNB bam bam alignments dm3 ENCSR195OCT Control ChIP-seq /fly-donors/ENCDO722NEY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41747/'], '@type': ['Target', 'Item'], 'name': 'NK7.1-dmelanogaster', 'label': 'NK7.1', '@id': '/targets/NK7.1-dmelanogaster/', 'title': 'NK7.1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '12a79ecb-cbab-4628-a8e5-4a598e25e26b', 'status': 'released'} dm3 3R 10123493 10223218 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF294JJG/ 940216859 Kevin White, UChicago 7a5d1b97b53114b3e722e19e5dc305ff https://www.encodeproject.org/files/ENCFF093ZNB/@@download/ENCFF093ZNB.bam released s3://encode-public/2015/08/03/7ddd807b-c415-4872-87ea-9a03e102df87/ENCFF093ZNB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF531VTC bigWig bigWig read-depth normalized signal dm3 ENCSR195OCT Control ChIP-seq /fly-donors/ENCDO722NEY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41747/'], '@type': ['Target', 'Item'], 'name': 'NK7.1-dmelanogaster', 'label': 'NK7.1', '@id': '/targets/NK7.1-dmelanogaster/', 'title': 'NK7.1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '12a79ecb-cbab-4628-a8e5-4a598e25e26b', 'status': 'released'} dm3 3R 10123493 10223218 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093ZNB/ 15351996 Kevin White, UChicago f13427b0f142a5010bea2df2cc0218ae https://www.encodeproject.org/files/ENCFF531VTC/@@download/ENCFF531VTC.bigWig released s3://encode-public/2015/10/05/da5f12fa-0858-47a6-9fae-d86124e4c83b/ENCFF531VTC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF412RDL bigWig bigWig signal of unique reads dm3 ENCSR195OCT Control ChIP-seq /fly-donors/ENCDO722NEY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41747/'], '@type': ['Target', 'Item'], 'name': 'NK7.1-dmelanogaster', 'label': 'NK7.1', '@id': '/targets/NK7.1-dmelanogaster/', 'title': 'NK7.1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '12a79ecb-cbab-4628-a8e5-4a598e25e26b', 'status': 'released'} dm3 3R 10123493 10223218 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093ZNB/ 15338566 Kevin White, UChicago 02271bff98397767150e30c74b01c04d https://www.encodeproject.org/files/ENCFF412RDL/@@download/ENCFF412RDL.bigWig released s3://encode-public/2015/10/05/5350d9d1-616b-4556-96b0-6e6f1cc50040/ENCFF412RDL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF025UGB bam bam alignments dm6 ENCSR195OCT Control ChIP-seq /fly-donors/ENCDO722NEY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41747/'], '@type': ['Target', 'Item'], 'name': 'NK7.1-dmelanogaster', 'label': 'NK7.1', '@id': '/targets/NK7.1-dmelanogaster/', 'title': 'NK7.1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '12a79ecb-cbab-4628-a8e5-4a598e25e26b', 'status': 'released'} dm3 3R 10123493 10223218 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF294JJG/ 936076532 Kevin White, UChicago 6d09f8958da2f8e945fd15a3c70044f4 https://www.encodeproject.org/files/ENCFF025UGB/@@download/ENCFF025UGB.bam released s3://encode-public/2016/04/22/4828e689-4226-48b5-840a-16904a6e21c2/ENCFF025UGB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF668QHR bigWig bigWig read-depth normalized signal dm6 ENCSR195OCT Control ChIP-seq /fly-donors/ENCDO722NEY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41747/'], '@type': ['Target', 'Item'], 'name': 'NK7.1-dmelanogaster', 'label': 'NK7.1', '@id': '/targets/NK7.1-dmelanogaster/', 'title': 'NK7.1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '12a79ecb-cbab-4628-a8e5-4a598e25e26b', 'status': 'released'} dm3 3R 10123493 10223218 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF025UGB/ 17417152 Kevin White, UChicago 97d37225bbc06793f4273f82e0126fc3 https://www.encodeproject.org/files/ENCFF668QHR/@@download/ENCFF668QHR.bigWig released s3://encode-public/2016/06/20/2d23e74e-32d8-4db3-9be9-3c3708a23322/ENCFF668QHR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF111PEH bigWig bigWig signal of unique reads dm6 ENCSR195OCT Control ChIP-seq /fly-donors/ENCDO722NEY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41747/'], '@type': ['Target', 'Item'], 'name': 'NK7.1-dmelanogaster', 'label': 'NK7.1', '@id': '/targets/NK7.1-dmelanogaster/', 'title': 'NK7.1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '12a79ecb-cbab-4628-a8e5-4a598e25e26b', 'status': 'released'} dm3 3R 10123493 10223218 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF025UGB/ 17397071 Kevin White, UChicago 7b6bf32ff043df84a929d9f9e4aab79e https://www.encodeproject.org/files/ENCFF111PEH/@@download/ENCFF111PEH.bigWig released s3://encode-public/2016/06/20/7bb83063-6641-487c-8dce-bf27a0aa7dbc/ENCFF111PEH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF742HRI fastq fastq reads ENCSR264VTB Control ChIP-seq /fly-donors/ENCDO012ZUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31310/'], '@type': ['Target', 'Item'], 'name': 'dm-dmelanogaster', 'label': 'dm', '@id': '/targets/dm-dmelanogaster/', 'title': 'dm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a30b0351-e93b-4991-828f-aec6c627d8a1', 'status': 'deleted'} dm3 X 3224568 3296675 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 472006522 Kevin White, UChicago f79170a41c5012c8e534ac6f78835197 https://www.encodeproject.org/files/ENCFF742HRI/@@download/ENCFF742HRI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/c1676415-7aba-4332-b8e8-257d1e5930f4/ENCFF742HRI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF613JIK bam bam alignments dm3 ENCSR264VTB Control ChIP-seq /fly-donors/ENCDO012ZUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31310/'], '@type': ['Target', 'Item'], 'name': 'dm-dmelanogaster', 'label': 'dm', '@id': '/targets/dm-dmelanogaster/', 'title': 'dm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a30b0351-e93b-4991-828f-aec6c627d8a1', 'status': 'deleted'} dm3 X 3224568 3296675 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF059UHX/, /files/ENCFF742HRI/ 680858483 Kevin White, UChicago 97bc68a4bf6d4e93a03664f31e84b2a0 https://www.encodeproject.org/files/ENCFF613JIK/@@download/ENCFF613JIK.bam released s3://encode-public/2015/08/03/b02d5b78-f327-4d39-898b-2a8340716c0e/ENCFF613JIK.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF118ZEF bigWig bigWig read-depth normalized signal dm3 ENCSR264VTB Control ChIP-seq /fly-donors/ENCDO012ZUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31310/'], '@type': ['Target', 'Item'], 'name': 'dm-dmelanogaster', 'label': 'dm', '@id': '/targets/dm-dmelanogaster/', 'title': 'dm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a30b0351-e93b-4991-828f-aec6c627d8a1', 'status': 'deleted'} dm3 X 3224568 3296675 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF613JIK/ 15319951 Kevin White, UChicago 8eb590ddf9dd911296a4d81fdf199c78 https://www.encodeproject.org/files/ENCFF118ZEF/@@download/ENCFF118ZEF.bigWig released s3://encode-public/2015/10/05/2e16570d-4ee9-46e7-98f5-acf475b7f98c/ENCFF118ZEF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF573NNT bigWig bigWig signal of unique reads dm3 ENCSR264VTB Control ChIP-seq /fly-donors/ENCDO012ZUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31310/'], '@type': ['Target', 'Item'], 'name': 'dm-dmelanogaster', 'label': 'dm', '@id': '/targets/dm-dmelanogaster/', 'title': 'dm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a30b0351-e93b-4991-828f-aec6c627d8a1', 'status': 'deleted'} dm3 X 3224568 3296675 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF613JIK/ 15305829 Kevin White, UChicago 175944ea6e16994af94335c32873a635 https://www.encodeproject.org/files/ENCFF573NNT/@@download/ENCFF573NNT.bigWig released s3://encode-public/2015/10/05/389321e3-f53b-4389-802d-aa79f8782439/ENCFF573NNT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF526XAG bam bam alignments dm6 ENCSR264VTB Control ChIP-seq /fly-donors/ENCDO012ZUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31310/'], '@type': ['Target', 'Item'], 'name': 'dm-dmelanogaster', 'label': 'dm', '@id': '/targets/dm-dmelanogaster/', 'title': 'dm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a30b0351-e93b-4991-828f-aec6c627d8a1', 'status': 'deleted'} dm3 X 3224568 3296675 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF479RCH/, /files/ENCFF742HRI/ 677506527 Kevin White, UChicago 6d5d45a70f502d1c32d0ec41833bbe3d https://www.encodeproject.org/files/ENCFF526XAG/@@download/ENCFF526XAG.bam released s3://encode-public/2016/04/21/cf78ea4e-2b30-4201-8e68-0ffa064b80c5/ENCFF526XAG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF245DKL bigWig bigWig signal of unique reads dm6 ENCSR264VTB Control ChIP-seq /fly-donors/ENCDO012ZUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31310/'], '@type': ['Target', 'Item'], 'name': 'dm-dmelanogaster', 'label': 'dm', '@id': '/targets/dm-dmelanogaster/', 'title': 'dm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a30b0351-e93b-4991-828f-aec6c627d8a1', 'status': 'deleted'} dm3 X 3224568 3296675 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF526XAG/ 17429695 Kevin White, UChicago 013b5cc225230eea0e9e9b2948dd2448 https://www.encodeproject.org/files/ENCFF245DKL/@@download/ENCFF245DKL.bigWig released s3://encode-public/2016/06/20/036a37f2-9055-445c-8f0a-5f6e5920448d/ENCFF245DKL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF836LFR bigWig bigWig read-depth normalized signal dm6 ENCSR264VTB Control ChIP-seq /fly-donors/ENCDO012ZUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31310/'], '@type': ['Target', 'Item'], 'name': 'dm-dmelanogaster', 'label': 'dm', '@id': '/targets/dm-dmelanogaster/', 'title': 'dm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a30b0351-e93b-4991-828f-aec6c627d8a1', 'status': 'deleted'} dm3 X 3224568 3296675 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF526XAG/ 17439173 Kevin White, UChicago ca80adcc3ccee6b1a28410faeff5cf19 https://www.encodeproject.org/files/ENCFF836LFR/@@download/ENCFF836LFR.bigWig released s3://encode-public/2016/06/20/608bcd4c-370d-4d9f-b7da-39da867ba85c/ENCFF836LFR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF608AZS fastq fastq reads ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 124538961 Michael Snyder, Stanford f7c3984db5a142c169e98343325658ab https://www.encodeproject.org/files/ENCFF608AZS/@@download/ENCFF608AZS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ea0566d7-59ba-4ccb-a867-d912da332c40/ENCFF608AZS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF324AYK fastq fastq reads ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 142441200 Michael Snyder, Stanford 62c735a59483694543ae469c81e17b65 https://www.encodeproject.org/files/ENCFF324AYK/@@download/ENCFF324AYK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/68f4dc15-50d1-4002-a839-c2c079bf5cb6/ENCFF324AYK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF385WBG bam bam alignments ce10 ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF608AZS/, /files/ENCFF324AYK/, /files/ENCFF987UMF/ 341015608 Kevin White, UChicago 6dc4e67745d6317ccbfb61ea908d0c58 https://www.encodeproject.org/files/ENCFF385WBG/@@download/ENCFF385WBG.bam released s3://encode-public/2016/10/18/2139d8d3-e29a-4f97-9391-f25934e945ff/ENCFF385WBG.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF536LBZ bam bam alignments ce11 ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF608AZS/, /files/ENCFF324AYK/, /files/ENCFF586MOL/ 341369849 Kevin White, UChicago e8033715f42eec46758f0f5d3a749791 https://www.encodeproject.org/files/ENCFF536LBZ/@@download/ENCFF536LBZ.bam released s3://encode-public/2016/10/19/c379329d-6199-45e4-949c-6852af21a461/ENCFF536LBZ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF111TOW bigWig bigWig signal of unique reads ce10 ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF385WBG/ 10044096 Kevin White, UChicago d7833ad0392c98062fbd7550ffde736e https://www.encodeproject.org/files/ENCFF111TOW/@@download/ENCFF111TOW.bigWig released s3://encode-public/2016/10/20/d5806cee-7dc5-46a6-9acc-41bb26c2b1ef/ENCFF111TOW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF512SNT bigWig bigWig read-depth normalized signal ce10 ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF385WBG/ 9980010 Kevin White, UChicago a42db63bc3eef24c2c22d46f82aef8e4 https://www.encodeproject.org/files/ENCFF512SNT/@@download/ENCFF512SNT.bigWig released s3://encode-public/2016/10/20/1e7459a2-a381-4868-a8c1-277b8f2a5b9d/ENCFF512SNT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF268HAC bigWig bigWig read-depth normalized signal ce11 ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF536LBZ/ 9987919 Kevin White, UChicago 431451c70d8a63fb8c6be1294f992b8d https://www.encodeproject.org/files/ENCFF268HAC/@@download/ENCFF268HAC.bigWig released s3://encode-public/2016/10/21/df6531f6-17b2-4e1d-903d-108096f82855/ENCFF268HAC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF213YIL bigWig bigWig signal of unique reads ce11 ENCSR582YPQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF536LBZ/ 10043793 Kevin White, UChicago 733ce1c35892729c209e8d24d90241f2 https://www.encodeproject.org/files/ENCFF213YIL/@@download/ENCFF213YIL.bigWig released s3://encode-public/2016/10/21/b0a31ed7-936c-490b-9328-6c9536e2e1e3/ENCFF213YIL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF359WRI fastq fastq reads ENCSR028XNW Control ChIP-seq /worm-donors/ENCDO428SCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179365/'], '@type': ['Target', 'Item'], 'name': 'drap-1-celegans', 'label': 'drap-1', '@id': '/targets/drap-1-celegans/', 'title': 'drap-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7cc0c0a5-c481-4143-9bff-5ac366732492', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 799733704 Kevin White, UChicago 9f71180dccda40cf779d71ca4776f4b6 https://www.encodeproject.org/files/ENCFF359WRI/@@download/ENCFF359WRI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/9e5731cc-4bf7-4b07-83f2-e8fc759ced45/ENCFF359WRI.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF195WYW fastq fastq reads ENCSR028XNW Control ChIP-seq /worm-donors/ENCDO428SCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179365/'], '@type': ['Target', 'Item'], 'name': 'drap-1-celegans', 'label': 'drap-1', '@id': '/targets/drap-1-celegans/', 'title': 'drap-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7cc0c0a5-c481-4143-9bff-5ac366732492', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 1059834581 Kevin White, UChicago ff97bb72ccf7ce1729ebb225648b64e8 https://www.encodeproject.org/files/ENCFF195WYW/@@download/ENCFF195WYW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/21b15560-18b5-476c-b0d3-db2dfc34cb41/ENCFF195WYW.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF924XXQ bam bam alignments ce11 ENCSR028XNW Control ChIP-seq /worm-donors/ENCDO428SCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179365/'], '@type': ['Target', 'Item'], 'name': 'drap-1-celegans', 'label': 'drap-1', '@id': '/targets/drap-1-celegans/', 'title': 'drap-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7cc0c0a5-c481-4143-9bff-5ac366732492', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF359WRI/, /files/ENCFF586MOL/ 1048004215 Kevin White, UChicago 38fef61206aaa8b4afb9b8d597d606ed https://www.encodeproject.org/files/ENCFF924XXQ/@@download/ENCFF924XXQ.bam released s3://encode-public/2018/05/31/2b3d0729-95a6-4cb5-9ede-2da0dc31c0ec/ENCFF924XXQ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF887BQI bam bam alignments ce11 ENCSR028XNW Control ChIP-seq /worm-donors/ENCDO428SCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179365/'], '@type': ['Target', 'Item'], 'name': 'drap-1-celegans', 'label': 'drap-1', '@id': '/targets/drap-1-celegans/', 'title': 'drap-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7cc0c0a5-c481-4143-9bff-5ac366732492', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 /files/ENCFF195WYW/, /files/ENCFF586MOL/ 1373309533 Kevin White, UChicago f8c92959c21c353decb2ed3529c4b1f5 https://www.encodeproject.org/files/ENCFF887BQI/@@download/ENCFF887BQI.bam released s3://encode-public/2018/05/31/ad517b6d-54bb-4872-9f99-a802db898ff3/ENCFF887BQI.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF162VTR bigWig bigWig read-depth normalized signal ce11 ENCSR028XNW Control ChIP-seq /worm-donors/ENCDO428SCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179365/'], '@type': ['Target', 'Item'], 'name': 'drap-1-celegans', 'label': 'drap-1', '@id': '/targets/drap-1-celegans/', 'title': 'drap-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7cc0c0a5-c481-4143-9bff-5ac366732492', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF924XXQ/, /files/ENCFF887BQI/ 9958566 Kevin White, UChicago 5bd0c8d5d8dc13aa7d8d1ef5fc2b4d2e https://www.encodeproject.org/files/ENCFF162VTR/@@download/ENCFF162VTR.bigWig released s3://encode-public/2018/05/31/f9455acc-1947-43fc-a689-84bb479871b2/ENCFF162VTR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF456FNP bigWig bigWig signal of unique reads ce11 ENCSR028XNW Control ChIP-seq /worm-donors/ENCDO428SCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179365/'], '@type': ['Target', 'Item'], 'name': 'drap-1-celegans', 'label': 'drap-1', '@id': '/targets/drap-1-celegans/', 'title': 'drap-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7cc0c0a5-c481-4143-9bff-5ac366732492', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF924XXQ/, /files/ENCFF887BQI/ 9938661 Kevin White, UChicago dcb0b76f2b2df66b5035f5765d706f9a https://www.encodeproject.org/files/ENCFF456FNP/@@download/ENCFF456FNP.bigWig released s3://encode-public/2018/05/31/f24961c2-b175-41d1-9949-9bc7683cf7bc/ENCFF456FNP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF793PFL fastq fastq reads ENCSR343CPV Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 498755199 Kevin White, UChicago 746e991fee5ba8fb3331fcbd153c9e3e https://www.encodeproject.org/files/ENCFF793PFL/@@download/ENCFF793PFL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/21/cd95bdbe-201c-4913-b45a-41daac6e64bf/ENCFF793PFL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF693UNA bam bam alignments dm3 ENCSR343CPV Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF793PFL/ 612702517 Kevin White, UChicago b8a0be6af45fd5aede896be2b6651443 https://www.encodeproject.org/files/ENCFF693UNA/@@download/ENCFF693UNA.bam released s3://encode-public/2015/10/21/fa022118-21e0-4cea-8771-2f4b5e42418b/ENCFF693UNA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF324VUM bigWig bigWig read-depth normalized signal dm3 ENCSR343CPV Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF693UNA/ 15267782 Kevin White, UChicago 3a709d8468e5a333789e7b5bc6287df2 https://www.encodeproject.org/files/ENCFF324VUM/@@download/ENCFF324VUM.bigWig released s3://encode-public/2015/10/21/9903cd27-bc38-4922-9fae-66adf2317f8b/ENCFF324VUM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF193JVO bigWig bigWig signal of unique reads dm3 ENCSR343CPV Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF693UNA/ 15321317 Kevin White, UChicago 0ecaaa1b7ad5e5bc411ed0c7a24191c2 https://www.encodeproject.org/files/ENCFF193JVO/@@download/ENCFF193JVO.bigWig released s3://encode-public/2015/10/21/95f8ad8c-4158-4e36-9094-98290bdc78a8/ENCFF193JVO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF456PFZ bam bam alignments dm6 ENCSR343CPV Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF793PFL/ 609157474 Kevin White, UChicago 3c1938d10c4532ece8a9b95f4c4f6fa5 https://www.encodeproject.org/files/ENCFF456PFZ/@@download/ENCFF456PFZ.bam released s3://encode-public/2016/04/21/a5cc6449-8c64-42d1-820f-e92461256a38/ENCFF456PFZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF674BIJ bigWig bigWig read-depth normalized signal dm6 ENCSR343CPV Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF456PFZ/ 17349285 Kevin White, UChicago 9436fdf9f65c9a46960fbe5f5f2d303f https://www.encodeproject.org/files/ENCFF674BIJ/@@download/ENCFF674BIJ.bigWig released s3://encode-public/2016/06/21/4df89c92-1919-40c8-8e2d-002a627eb02c/ENCFF674BIJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF356BDX bigWig bigWig signal of unique reads dm6 ENCSR343CPV Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF456PFZ/ 17427589 Kevin White, UChicago 5e60973284b99fcd2e5da8d25fe75e09 https://www.encodeproject.org/files/ENCFF356BDX/@@download/ENCFF356BDX.bigWig released s3://encode-public/2016/06/21/8c938dff-88bf-4aac-88b3-d517ead9b0df/ENCFF356BDX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF765QAR fastq fastq reads ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2734487936 Bing Ren, UCSD fa39ae86bb9c14b65d8baad3b19a07eb SRA:SRR3652071 https://www.encodeproject.org/files/ENCFF765QAR/@@download/ENCFF765QAR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/0ef1ac74-793f-4332-bf66-bef3bee035f6/ENCFF765QAR.fastq.gz inconsistent platforms ENCFF647PIC fastq fastq reads ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2858738507 Bing Ren, UCSD 77af25292c2bf7c535ae93838e8ca3d3 SRA:SRR3652069 https://www.encodeproject.org/files/ENCFF647PIC/@@download/ENCFF647PIC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/188acb11-baef-4dd3-97d9-382c12ca3531/ENCFF647PIC.fastq.gz inconsistent platforms ENCFF241ENQ bam bam alignments mm10-minimal ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF765QAR/ 2227880518 ENCODE Processing Pipeline e840a86575c0878d099c71b02bcf9b0e https://www.encodeproject.org/files/ENCFF241ENQ/@@download/ENCFF241ENQ.bam archived s3://encode-public/2015/10/31/ceabcf59-f763-4d6b-ac9a-4fe89907d2b3/ENCFF241ENQ.bam inconsistent platforms ENCFF037XLR bam bam alignments mm10-minimal ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF647PIC/, /files/ENCFF806TVZ/ 2346354344 ENCODE Processing Pipeline a86c934e2c973f0becd79877001822af https://www.encodeproject.org/files/ENCFF037XLR/@@download/ENCFF037XLR.bam archived s3://encode-public/2015/10/31/ecb46f1c-801d-4473-9d89-39c017c4dd5e/ENCFF037XLR.bam inconsistent platforms ENCFF568OGC fastq fastq reads ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 245483521 Bing Ren, UCSD e25699543f842f69c6b7497b3ac75d87 SRA:SRR3652070 https://www.encodeproject.org/files/ENCFF568OGC/@@download/ENCFF568OGC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/105922b9-32e8-465f-a0ac-fdce42967546/ENCFF568OGC.fastq.gz inconsistent platforms ENCFF732BVK fastq fastq reads ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 372698945 Bing Ren, UCSD b2c4208f19ea1770cafa42ba59aeec6d SRA:SRR3652072 https://www.encodeproject.org/files/ENCFF732BVK/@@download/ENCFF732BVK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/f65a0951-4abf-4e05-8d91-4bcb0266f1ac/ENCFF732BVK.fastq.gz inconsistent platforms ENCFF977IDX bam bam unfiltered alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF732BVK/, /files/ENCFF765QAR/ 3894091585 ENCODE Processing Pipeline 049ffe72de56fd11ac08ff41d89dc5ac https://www.encodeproject.org/files/ENCFF977IDX/@@download/ENCFF977IDX.bam released s3://encode-public/2016/07/18/1914b7ee-b396-4768-9c3d-6287d4f9439c/ENCFF977IDX.bam ENCODE3 mm10 archived inconsistent platforms ENCFF642FOT bam bam alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF647PIC/, /files/ENCFF018NEO/, /files/ENCFF568OGC/ 2608757952 ENCODE Processing Pipeline 460d39b70fc137cc5279f1e4a8825e72 https://www.encodeproject.org/files/ENCFF642FOT/@@download/ENCFF642FOT.bam released s3://encode-public/2016/07/18/f6073961-d52f-4248-b1fb-f607c00e27a8/ENCFF642FOT.bam ENCODE3 mm10 archived inconsistent platforms ENCFF553MCQ bam bam unfiltered alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF647PIC/, /files/ENCFF018NEO/, /files/ENCFF568OGC/ 3861439444 ENCODE Processing Pipeline 4ce2389569baa698f84c1728afa5977b https://www.encodeproject.org/files/ENCFF553MCQ/@@download/ENCFF553MCQ.bam released s3://encode-public/2016/07/18/249d56b2-d72f-48e1-9c01-3d26d0c2e168/ENCFF553MCQ.bam ENCODE3 mm10 archived inconsistent platforms ENCFF487AIV bam bam alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF732BVK/, /files/ENCFF765QAR/ 2614257160 ENCODE Processing Pipeline e1413084a4b7b187051f97866344931d https://www.encodeproject.org/files/ENCFF487AIV/@@download/ENCFF487AIV.bam released s3://encode-public/2016/07/18/59817f55-f5c2-46ca-b5fc-be943533f577/ENCFF487AIV.bam ENCODE3 mm10 archived inconsistent platforms ENCFF382KGG bam bam alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF732BVK/, /files/ENCFF309GLL/, /files/ENCFF765QAR/ 2699206116 ENCODE Processing Pipeline e895da6ec2bef1809ee664fd5bb504a5 https://www.encodeproject.org/files/ENCFF382KGG/@@download/ENCFF382KGG.bam released s3://encode-public/2020/10/08/b9b30935-4328-4d70-bf5c-bb56718f85ff/ENCFF382KGG.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF021LHH bam bam unfiltered alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF732BVK/, /files/ENCFF309GLL/, /files/ENCFF765QAR/ 3807277776 ENCODE Processing Pipeline ddcd4466e170297d40f6332f4fe4eb6d https://www.encodeproject.org/files/ENCFF021LHH/@@download/ENCFF021LHH.bam released s3://encode-public/2020/10/08/3a8a1e91-1dcb-41e5-80d5-235e4072fef8/ENCFF021LHH.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF432PIJ bam bam unfiltered alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF309GLL/, /files/ENCFF568OGC/, /files/ENCFF647PIC/ 3779698421 ENCODE Processing Pipeline 402204e3a0c24787e295b71bfb9422b1 https://www.encodeproject.org/files/ENCFF432PIJ/@@download/ENCFF432PIJ.bam released s3://encode-public/2020/10/08/1fa72018-93c5-409f-94d5-9cc921ea7f9c/ENCFF432PIJ.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF074XLH bam bam alignments mm10 ENCSR424WHM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF309GLL/, /files/ENCFF568OGC/, /files/ENCFF647PIC/ 2700865154 ENCODE Processing Pipeline 81800165212fba6458e09921c3f40c3a https://www.encodeproject.org/files/ENCFF074XLH/@@download/ENCFF074XLH.bam released s3://encode-public/2020/10/08/43bcda89-99e1-45a1-a742-1011e9ec4e14/ENCFF074XLH.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF538TOX fastq fastq reads ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 2122158233 Bradley Bernstein, Broad a31f9096a9794b6e567aa8483a07eaa7 SRA:SRR10388644 https://www.encodeproject.org/files/ENCFF538TOX/@@download/ENCFF538TOX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/b3762ba9-98f3-4681-82ca-bfe5b50ee4dd/ENCFF538TOX.fastq.gz ENCFF917PJD fastq fastq reads ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1153719970 Bradley Bernstein, Broad 1fe1bcb7dcf7c86c56184ee7d90859e7 SRA:SRR10388648 https://www.encodeproject.org/files/ENCFF917PJD/@@download/ENCFF917PJD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/4e6119fc-9d62-424d-8c59-ee73bb7f9b84/ENCFF917PJD.fastq.gz ENCFF420TPT fastq fastq reads ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 2111114484 Bradley Bernstein, Broad 24b15280bf412b8591a1e71b1d2ab870 SRA:SRR10388645 https://www.encodeproject.org/files/ENCFF420TPT/@@download/ENCFF420TPT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/42f0c604-6614-4997-9edd-8e10d9b09360/ENCFF420TPT.fastq.gz ENCFF992RYH fastq fastq reads ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1172378708 Bradley Bernstein, Broad 4bda4a5e744547ec82b30950033ad10a SRA:SRR10388649 https://www.encodeproject.org/files/ENCFF992RYH/@@download/ENCFF992RYH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/39fe19a2-0f7e-4ad7-ba94-0edd924a177f/ENCFF992RYH.fastq.gz ENCFF197ZIR fastq fastq reads ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 1048460382 Bradley Bernstein, Broad 71774c213c6472ba81405e8f98e6879a SRA:SRR10388646 https://www.encodeproject.org/files/ENCFF197ZIR/@@download/ENCFF197ZIR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/a03a2e16-2205-4aa5-af33-f64093ebb559/ENCFF197ZIR.fastq.gz ENCFF412QKG fastq fastq reads ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 1061833917 Bradley Bernstein, Broad cb6ddf6031e5032e416ceca75808443f SRA:SRR10388647 https://www.encodeproject.org/files/ENCFF412QKG/@@download/ENCFF412QKG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/82fb3f37-abda-413a-b11e-bc47816b7e1a/ENCFF412QKG.fastq.gz ENCFF702PKY bam bam unfiltered alignments hg19 ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF420TPT/, /files/ENCFF917PJD/, /files/ENCFF197ZIR/, /files/ENCFF538TOX/, /files/ENCFF807MUK/, /files/ENCFF412QKG/, /files/ENCFF992RYH/ 7966300020 ENCODE Processing Pipeline 3e4be8faf9900f601fb3a0c45f880c6d https://www.encodeproject.org/files/ENCFF702PKY/@@download/ENCFF702PKY.bam released s3://encode-public/2019/08/12/c422418e-79b1-467a-96bb-ffe2103c492c/ENCFF702PKY.bam ENCODE3 hg19 archived ENCFF613WFP bam bam unfiltered alignments GRCh38 ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF420TPT/, /files/ENCFF917PJD/, /files/ENCFF197ZIR/, /files/ENCFF538TOX/, /files/ENCFF643CGH/, /files/ENCFF412QKG/, /files/ENCFF992RYH/ 7983233506 ENCODE Processing Pipeline 09f148b767652b6090d2be21cabee733 https://www.encodeproject.org/files/ENCFF613WFP/@@download/ENCFF613WFP.bam released s3://encode-public/2019/08/12/c2afecb2-ef92-4591-8eb8-95ed4853a4a7/ENCFF613WFP.bam ENCODE3 GRCh38 archived ENCFF940RRX bam bam alignments hg19 ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF420TPT/, /files/ENCFF917PJD/, /files/ENCFF197ZIR/, /files/ENCFF538TOX/, /files/ENCFF807MUK/, /files/ENCFF412QKG/, /files/ENCFF992RYH/ 6469961349 ENCODE Processing Pipeline 5560c0fe437c0aec3db612fe99b003c3 https://www.encodeproject.org/files/ENCFF940RRX/@@download/ENCFF940RRX.bam released s3://encode-public/2019/08/12/031812c6-0f9c-47f4-ac60-44b591f2b299/ENCFF940RRX.bam ENCODE3 hg19 archived ENCFF663JWI bam bam alignments GRCh38 ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF420TPT/, /files/ENCFF917PJD/, /files/ENCFF197ZIR/, /files/ENCFF538TOX/, /files/ENCFF643CGH/, /files/ENCFF412QKG/, /files/ENCFF992RYH/ 6479532184 ENCODE Processing Pipeline b659cb4740a28571e0a7636ae88b16c8 https://www.encodeproject.org/files/ENCFF663JWI/@@download/ENCFF663JWI.bam released s3://encode-public/2019/08/12/67152a12-894d-49bf-b92f-903992ac6ed1/ENCFF663JWI.bam ENCODE3 GRCh38 archived ENCFF392SVF bam bam unfiltered alignments GRCh38 ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF197ZIR/, /files/ENCFF110MCL/, /files/ENCFF538TOX/, /files/ENCFF992RYH/, /files/ENCFF412QKG/, /files/ENCFF420TPT/, /files/ENCFF917PJD/ 7913232011 ENCODE Processing Pipeline d4f4905bb70d68928e14a81602cc5461 https://www.encodeproject.org/files/ENCFF392SVF/@@download/ENCFF392SVF.bam released s3://encode-public/2020/09/19/6cc20a25-c838-4b21-920e-f4a770aee53f/ENCFF392SVF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF831MFQ bam bam alignments GRCh38 ENCSR746QZL Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF197ZIR/, /files/ENCFF110MCL/, /files/ENCFF538TOX/, /files/ENCFF992RYH/, /files/ENCFF412QKG/, /files/ENCFF420TPT/, /files/ENCFF917PJD/ 6467771311 ENCODE Processing Pipeline 48f615a5373a1dabf521938e2a3a88c1 https://www.encodeproject.org/files/ENCFF831MFQ/@@download/ENCFF831MFQ.bam released s3://encode-public/2020/09/19/4d13d354-d8ae-4cb3-9fb4-326086d93b00/ENCFF831MFQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF876HRO fastq fastq reads ENCSR227UFB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 1_1 50 single-ended 924106938 Richard Myers, HAIB 508ea5a542027dea2fe8389d373814f6 SRA:SRR5111321 https://www.encodeproject.org/files/ENCFF876HRO/@@download/ENCFF876HRO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/61235429-0c97-4c7a-ad04-07fd144c892e/ENCFF876HRO.fastq.gz low read depth ENCFF306XML bam bam unfiltered alignments mm10 ENCSR227UFB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF876HRO/ 1048155067 ENCODE Processing Pipeline 875d675872f5b4df782ee85b0f81e808 https://www.encodeproject.org/files/ENCFF306XML/@@download/ENCFF306XML.bam released s3://encode-public/2016/05/20/b69ed779-8638-49f0-baaa-d626aac9e3db/ENCFF306XML.bam ENCODE3 mm10 archived low read depth ENCFF503YHJ bam bam alignments mm10 ENCSR227UFB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF876HRO/ 806993697 ENCODE Processing Pipeline 43dc22eee288c327beb98d68aee02fba https://www.encodeproject.org/files/ENCFF503YHJ/@@download/ENCFF503YHJ.bam released s3://encode-public/2016/05/20/20af9e37-7190-45ab-927f-c93a536a3136/ENCFF503YHJ.bam ENCODE3 mm10 archived low read depth ENCFF495IIB bam bam alignments mm10 ENCSR227UFB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF876HRO/ 823218315 ENCODE Processing Pipeline 71f048c33e6d108eece1ebcc02e10fa8 https://www.encodeproject.org/files/ENCFF495IIB/@@download/ENCFF495IIB.bam released s3://encode-public/2020/11/06/c89a271a-15f1-4c7c-984f-5ebf94ab5c59/ENCFF495IIB.bam ENCODE4 v1.6.1 mm10 released low read depth ENCFF885JQX bam bam unfiltered alignments mm10 ENCSR227UFB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF876HRO/ 1031505757 ENCODE Processing Pipeline 33c6f2e7f7d7e44bf68fc7fb0e56c131 https://www.encodeproject.org/files/ENCFF885JQX/@@download/ENCFF885JQX.bam released s3://encode-public/2020/11/06/847464c8-6123-401b-923f-e94a03c76331/ENCFF885JQX.bam ENCODE4 v1.6.1 mm10 released low read depth ENCFF575QQQ fastq fastq reads ENCSR398DIK Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 133809101 Michael Snyder, Stanford 979e78a6ff4874a84be7bf0821c0bd6e https://www.encodeproject.org/files/ENCFF575QQQ/@@download/ENCFF575QQQ.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/6744ba0e-438e-4db4-8344-0369232fb881/ENCFF575QQQ.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF921TGE fastq fastq reads ENCSR398DIK Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 152774872 Kevin White, UChicago 5f91def3bb44821b0075a799edd0b5bf https://www.encodeproject.org/files/ENCFF921TGE/@@download/ENCFF921TGE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF890GMZ/, /files/ENCFF677KCA/ archived s3://encode-public/2016/10/25/34c8343f-450a-4bfb-bba2-cf8041943c2d/ENCFF921TGE.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF633RGF tagAlign tagAlign alignments hg19 ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF634CSE/ 83200394 Anshul Kundaje, Stanford 4117b631ef2e1c3bf01096ad74e99112 https://www.encodeproject.org/files/ENCFF633RGF/@@download/ENCFF633RGF.tagAlign.gz archived s3://encode-public/2016/03/30/bb328458-26f8-4c06-a778-24f92e4bcc7a/ENCFF633RGF.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF634CSE fastq fastq reads ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 501531459 Zhiping Weng, UMass 45887624e8fa47cfb7ec03debbb5d6d5 SRA:SRR067975 https://www.encodeproject.org/files/ENCFF634CSE/@@download/ENCFF634CSE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/12/6000fee4-7daf-4ca8-bc87-a450909e7141/ENCFF634CSE.fastq.gz low read depth, low read length ENCFF069BCD bam bam unfiltered alignments hg19 ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF634CSE/, /files/ENCFF807MUK/ 629762580 ENCODE Processing Pipeline af43b7719c99cc278d878aec5cba7cba https://www.encodeproject.org/files/ENCFF069BCD/@@download/ENCFF069BCD.bam released s3://encode-public/2016/12/19/8cde6415-5df5-4b87-9530-eb36a33dae3a/ENCFF069BCD.bam ENCODE3 hg19 archived low read depth, low read length ENCFF666XWP bam bam alignments hg19 ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF634CSE/, /files/ENCFF807MUK/ 448874968 ENCODE Processing Pipeline fc953697c2a0f5e36f289e4d18683730 https://www.encodeproject.org/files/ENCFF666XWP/@@download/ENCFF666XWP.bam released s3://encode-public/2016/12/19/58621cfb-ceaa-4353-9d3a-b96a3250c376/ENCFF666XWP.bam ENCODE3 hg19 archived low read depth, low read length ENCFF955QUS bam bam unfiltered alignments GRCh38 ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF634CSE/, /files/ENCFF643CGH/ 632243326 ENCODE Processing Pipeline 20c65f1f9d05ff5f3160d32943b6d894 https://www.encodeproject.org/files/ENCFF955QUS/@@download/ENCFF955QUS.bam released s3://encode-public/2016/12/19/232aeeac-a3f7-452c-929a-838db420fa50/ENCFF955QUS.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF393RKZ bam bam alignments GRCh38 ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF634CSE/, /files/ENCFF643CGH/ 448772020 ENCODE Processing Pipeline 4cedf9ddeab18f63a584aff3abe1b620 https://www.encodeproject.org/files/ENCFF393RKZ/@@download/ENCFF393RKZ.bam released s3://encode-public/2016/12/19/6dda4025-3de6-4494-90c2-fc557cbb5f1b/ENCFF393RKZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF082DVM bam bam unfiltered alignments GRCh38 ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF634CSE/, /files/ENCFF110MCL/ 621074585 ENCODE Processing Pipeline 8526fcc94b2324811ec7991b90764840 https://www.encodeproject.org/files/ENCFF082DVM/@@download/ENCFF082DVM.bam released s3://encode-public/2020/11/13/4d3d943c-17ca-43f4-b1c8-18c1250b35f8/ENCFF082DVM.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF246BVN bam bam alignments GRCh38 ENCSR407ZAC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF634CSE/, /files/ENCFF110MCL/ 476320934 ENCODE Processing Pipeline 5514b88671d486644273ae13ff39d2db https://www.encodeproject.org/files/ENCFF246BVN/@@download/ENCFF246BVN.bam released s3://encode-public/2020/11/13/ab2393eb-d4bd-466e-97ef-ade9267644d7/ENCFF246BVN.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF089IQB fastq fastq reads ENCSR309FNI Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 781914416 Kevin White, UChicago 13ff64baa162083757b239708790cce7 https://www.encodeproject.org/files/ENCFF089IQB/@@download/ENCFF089IQB.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/15/e2722b2b-16cd-4415-9b1f-4bfafb495d15/ENCFF089IQB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF004BRF bam bam alignments dm3 ENCSR309FNI Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF059UHX/, /files/ENCFF089IQB/ 883475426 Kevin White, UChicago 67a7e388738779873d82e6eef2bf8717 https://www.encodeproject.org/files/ENCFF004BRF/@@download/ENCFF004BRF.bam released s3://encode-public/2017/06/18/4c3d5fd9-56d2-423f-ba78-fa12a758df09/ENCFF004BRF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF300LCZ bam bam alignments dm6 ENCSR309FNI Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF479RCH/, /files/ENCFF089IQB/ 862345749 Kevin White, UChicago 43e0cc07a06d80ed9fb5a9c8205ce32a https://www.encodeproject.org/files/ENCFF300LCZ/@@download/ENCFF300LCZ.bam released s3://encode-public/2017/06/28/48bd5f1b-c5d7-4788-b019-6efaa50e2204/ENCFF300LCZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF068NJK bigWig bigWig signal of unique reads dm3 ENCSR309FNI Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF004BRF/ 15419777 Kevin White, UChicago c5b7ea50791b35b4c344bb4185589949 https://www.encodeproject.org/files/ENCFF068NJK/@@download/ENCFF068NJK.bigWig released s3://encode-public/2017/06/29/ee2af7bc-dcb2-43bb-ab7c-5032f34dbbba/ENCFF068NJK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF297LVB bigWig bigWig read-depth normalized signal dm3 ENCSR309FNI Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF004BRF/ 15430048 Kevin White, UChicago 9db1486f3971116a9a86d72821d0afd0 https://www.encodeproject.org/files/ENCFF297LVB/@@download/ENCFF297LVB.bigWig released s3://encode-public/2017/06/29/3f07f4a8-8099-4d95-a83c-dd69547a1680/ENCFF297LVB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF526IFI bigWig bigWig signal of unique reads dm6 ENCSR309FNI Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF300LCZ/ 17583159 Kevin White, UChicago 6e2182e06b31456a014a90499095f30e https://www.encodeproject.org/files/ENCFF526IFI/@@download/ENCFF526IFI.bigWig released s3://encode-public/2017/07/03/4e21bf06-40aa-42d9-8471-ac67a6402562/ENCFF526IFI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF917GZG bigWig bigWig read-depth normalized signal dm6 ENCSR309FNI Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF300LCZ/ 17599212 Kevin White, UChicago a0526018a17d24524db0b77d88a92140 https://www.encodeproject.org/files/ENCFF917GZG/@@download/ENCFF917GZG.bigWig released s3://encode-public/2017/07/03/5e9ac46e-2bb5-4802-a92d-b7d8a57f1b54/ENCFF917GZG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF204XEC tagAlign tagAlign alignments hg19 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF126XLK/ 45857729 Anshul Kundaje, Stanford 27633f10932f03fa189a5bd55477bb83 https://www.encodeproject.org/files/ENCFF204XEC/@@download/ENCFF204XEC.tagAlign.gz archived s3://encode-public/2016/03/30/5aa9edba-2b08-4aea-8332-35e992ecea48/ENCFF204XEC.tagAlign.gz Lab custom hg19 archived low read length insufficient read depth ENCFF126XLK fastq fastq reads ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 291288146 Zhiping Weng, UMass 77af48f85e1ffd14d62f8b6ed77fff22 SRA:SRR067970 https://www.encodeproject.org/files/ENCFF126XLK/@@download/ENCFF126XLK.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/705f999f-7c62-4f26-a9ef-06f9d2aa462b/ENCFF126XLK.fastq.gz low read length insufficient read depth ENCFF515ZEL bam bam unfiltered alignments GRCh38 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF126XLK/ 334211865 ENCODE Processing Pipeline 61e34ed63737be07e08c263def4c3b87 https://www.encodeproject.org/files/ENCFF515ZEL/@@download/ENCFF515ZEL.bam released s3://encode-public/2016/12/19/9e2a0ceb-a470-4ab8-bee2-ed3001c63c40/ENCFF515ZEL.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF572GEP bam bam alignments GRCh38 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF126XLK/ 194593432 ENCODE Processing Pipeline 5a8729c99ea0449c94bd5b672b534589 https://www.encodeproject.org/files/ENCFF572GEP/@@download/ENCFF572GEP.bam released s3://encode-public/2016/12/19/bd631752-f33f-4a25-a4f2-9a98f3245cb9/ENCFF572GEP.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF513REG bam bam unfiltered alignments hg19 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF126XLK/ 333808874 ENCODE Processing Pipeline 194d9bb3acde49d7ac21a4dfd8dbb2a0 https://www.encodeproject.org/files/ENCFF513REG/@@download/ENCFF513REG.bam released s3://encode-public/2016/12/19/9a488d7d-bd72-4711-a5c1-07f66d9f386c/ENCFF513REG.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF852AWC bam bam alignments hg19 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF126XLK/ 194641544 ENCODE Processing Pipeline 0c93610e2a585e858ac865a871ec7ebf https://www.encodeproject.org/files/ENCFF852AWC/@@download/ENCFF852AWC.bam released s3://encode-public/2016/12/19/068e6cd4-28f1-41b2-8a2d-3ac84c507082/ENCFF852AWC.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF543YCR bam bam unfiltered alignments GRCh38 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF126XLK/ 330862252 ENCODE Processing Pipeline d3615439860faa3f1a56e2b94d859a25 https://www.encodeproject.org/files/ENCFF543YCR/@@download/ENCFF543YCR.bam released s3://encode-public/2020/10/08/88a70c81-4d26-4496-aade-74a004150ddd/ENCFF543YCR.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF957SWP bam bam alignments GRCh38 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF126XLK/ 209817764 ENCODE Processing Pipeline ec82649838759ca6f9d1bf2a7ab20966 https://www.encodeproject.org/files/ENCFF957SWP/@@download/ENCFF957SWP.bam released s3://encode-public/2020/10/08/406b7638-9778-4801-a93c-746078f4849e/ENCFF957SWP.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF801LEU bam bam unfiltered alignments GRCh38 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF126XLK/ 289300045 ENCODE Processing Pipeline 6ecbf5b54222a65dc2e56cb5ab061f39 https://www.encodeproject.org/files/ENCFF801LEU/@@download/ENCFF801LEU.bam released s3://encode-public/2020/10/21/db950be4-81e1-483b-ad70-0d07fde19ccc/ENCFF801LEU.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF983JUZ bam bam alignments GRCh38 ENCSR985CHJ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF126XLK/ 177828723 ENCODE Processing Pipeline 552f3a261b6325ba157a8cd787e35d6a https://www.encodeproject.org/files/ENCFF983JUZ/@@download/ENCFF983JUZ.bam released s3://encode-public/2020/10/21/10e8346c-8d38-454c-9441-8138fdffe643/ENCFF983JUZ.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF688CJA bam bam alignments GRCh38 ENCSR606GRT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF906FLV/, /files/ENCFF989FNQ/ 974070330 Yijun Ruan, JAX 408a471dc058d58706a82d44fcecbc38 https://www.encodeproject.org/files/ENCFF688CJA/@@download/ENCFF688CJA.bam released s3://encode-public/2020/08/07/16d8d3c0-8f4b-4c26-b351-242da33b840b/ENCFF688CJA.bam Lab custom GRCh38 archived low read depth ENCFF989FNQ fastq fastq reads ENCSR606GRT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 single-ended 1041965903 Yijun Ruan, JAX c8ede71b2f783ef708a662bf1c34a537 SRA:SRR14107608 https://www.encodeproject.org/files/ENCFF989FNQ/@@download/ENCFF989FNQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/08/07/83eea542-0731-4dfd-ab23-e17c2d0efc5c/ENCFF989FNQ.fastq.gz low read depth ENCFF824IQI bam bam unfiltered alignments GRCh38 ENCSR606GRT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF989FNQ/, /files/ENCFF110MCL/ 1197326850 ENCODE Processing Pipeline 072ac5ca926d7f957e3f2e66133a4cbf https://www.encodeproject.org/files/ENCFF824IQI/@@download/ENCFF824IQI.bam released s3://encode-public/2020/11/13/d80fd978-77b5-4362-a500-3766db884532/ENCFF824IQI.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF805JAE bam bam alignments GRCh38 ENCSR606GRT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF989FNQ/, /files/ENCFF110MCL/ 967435372 ENCODE Processing Pipeline 10ba974302aba9d5399d49a44bb34931 https://www.encodeproject.org/files/ENCFF805JAE/@@download/ENCFF805JAE.bam released s3://encode-public/2020/11/13/2770cb74-7b4b-475d-9805-0a1e4d13e0e6/ENCFF805JAE.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF697YMQ fastq fastq reads ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 542864246 Tim Reddy, Duke bfd00b6197d4d42c4857bf8bcb4435b5 SRA:SRR5092922 https://www.encodeproject.org/files/ENCFF697YMQ/@@download/ENCFF697YMQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/50b1a01d-31cd-4228-8020-74ef23ab96bc/ENCFF697YMQ.fastq.gz ENCFF759SMG fastq fastq reads ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 743417750 Tim Reddy, Duke a21d10023289e3fd204d0640a6723bca SRA:SRR5092920 https://www.encodeproject.org/files/ENCFF759SMG/@@download/ENCFF759SMG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/86747971-1619-4176-8509-c82d41ca631c/ENCFF759SMG.fastq.gz ENCFF989IQK fastq fastq reads ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 827323069 Tim Reddy, Duke 174aed7f0554b661b4353ca223719bb0 SRA:SRR5092921 https://www.encodeproject.org/files/ENCFF989IQK/@@download/ENCFF989IQK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/a399207b-f929-41e8-b60f-20ada42557f5/ENCFF989IQK.fastq.gz ENCFF316HIV bam bam alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF989IQK/ 918675533 Tim Reddy, Duke 52478a7a02df8b99d040693468a88a27 https://www.encodeproject.org/files/ENCFF316HIV/@@download/ENCFF316HIV.bam released s3://encode-public/2016/10/19/f68b6dcb-ec91-49ac-aea3-1d9f83cdfe68/ENCFF316HIV.bam Lab custom GRCh38 archived ENCFF922QHU bam bam alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF697YMQ/ 603364239 Tim Reddy, Duke 10c75e1003d85160c43cc364ee50ccc7 https://www.encodeproject.org/files/ENCFF922QHU/@@download/ENCFF922QHU.bam released s3://encode-public/2016/10/19/300271a9-2f0d-4bd9-841b-7a4c5332e2aa/ENCFF922QHU.bam Lab custom GRCh38 archived ENCFF791ASI bam bam alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF759SMG/ 819930622 Tim Reddy, Duke f351341714ec0aa21e2dc3ba995b9e27 https://www.encodeproject.org/files/ENCFF791ASI/@@download/ENCFF791ASI.bam released s3://encode-public/2016/10/19/a1c8a20e-86d6-4744-9dc4-3da444b78580/ENCFF791ASI.bam Lab custom GRCh38 archived ENCFF884SZY bam bam alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF697YMQ/ 615479529 ENCODE Processing Pipeline 8df9ba38b839f3b991b4aeaffec3661e https://www.encodeproject.org/files/ENCFF884SZY/@@download/ENCFF884SZY.bam released s3://encode-public/2020/11/13/31998f5d-18bc-4c6d-8100-7adc2ce7324a/ENCFF884SZY.bam ENCODE4 v1.6.1 GRCh38 released ENCFF711HGG bam bam unfiltered alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF759SMG/, /files/ENCFF110MCL/ 1004844237 ENCODE Processing Pipeline bc0eb668b19ce6684b2762988fc046b5 https://www.encodeproject.org/files/ENCFF711HGG/@@download/ENCFF711HGG.bam released s3://encode-public/2020/11/13/13419b2c-4d61-4083-bef3-bc5ababebc95/ENCFF711HGG.bam ENCODE4 v1.6.1 GRCh38 released ENCFF708MIN bam bam alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF989IQK/, /files/ENCFF110MCL/ 965018048 ENCODE Processing Pipeline c5833061b3e5ffddef0efcf5424fbbb6 https://www.encodeproject.org/files/ENCFF708MIN/@@download/ENCFF708MIN.bam released s3://encode-public/2020/11/13/bf8b348a-e3e1-4411-95a6-6d888e7db704/ENCFF708MIN.bam ENCODE4 v1.6.1 GRCh38 released ENCFF342XDL bam bam unfiltered alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF989IQK/, /files/ENCFF110MCL/ 1129764398 ENCODE Processing Pipeline 1753146d67ff1060abaf4d6c33043fe8 https://www.encodeproject.org/files/ENCFF342XDL/@@download/ENCFF342XDL.bam released s3://encode-public/2020/11/13/72c4c38a-dce3-4b34-87c6-157bd194c0fd/ENCFF342XDL.bam ENCODE4 v1.6.1 GRCh38 released ENCFF939EBH bam bam unfiltered alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF697YMQ/ 755008694 ENCODE Processing Pipeline ead9e982e4e1e9f38a39fc48eaf25a0f https://www.encodeproject.org/files/ENCFF939EBH/@@download/ENCFF939EBH.bam released s3://encode-public/2020/11/13/b67c9d13-9b5a-443a-abf5-6943939008f8/ENCFF939EBH.bam ENCODE4 v1.6.1 GRCh38 released ENCFF992ULQ bam bam alignments GRCh38 ENCSR467GRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF759SMG/, /files/ENCFF110MCL/ 859101518 ENCODE Processing Pipeline 6772d2cd21d12f879fc54a1d0eaca596 https://www.encodeproject.org/files/ENCFF992ULQ/@@download/ENCFF992ULQ.bam released s3://encode-public/2020/11/13/a7f2842b-5e98-4759-8305-c06670f13676/ENCFF992ULQ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF509VQG fastq fastq reads ENCSR983OYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 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Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9572/'], '@type': ['Target', 'Item'], 'name': 'NR1D1-human', 'label': 'NR1D1', '@id': '/targets/NR1D1-human/', 'title': 'NR1D1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e8b50f06-81be-4100-866e-47912a10f354', 'status': 'released'} DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF509VQG/ 3723094185 Michael Snyder, Stanford b4e85ad2560b8427d063a8b1f9146b35 https://www.encodeproject.org/files/ENCFF049GKP/@@download/ENCFF049GKP.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/f32a9fd9-fadd-4d4f-97bb-c148e2535114/ENCFF049GKP.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF768LUF bam bam unfiltered alignments GRCh38 ENCSR983OYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9572/'], '@type': ['Target', 'Item'], 'name': 'NR1D1-human', 'label': 'NR1D1', '@id': '/targets/NR1D1-human/', 'title': 'NR1D1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e8b50f06-81be-4100-866e-47912a10f354', 'status': 'released'} DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF049GKP/, /files/ENCFF509VQG/, /files/ENCFF110MCL/ 5660204833 ENCODE Processing Pipeline cdbeb6d755b28eeeb456b778fe54d070 https://www.encodeproject.org/files/ENCFF768LUF/@@download/ENCFF768LUF.bam released s3://encode-public/2022/04/01/e142583b-7c18-4822-8626-2ab489ec1d2b/ENCFF768LUF.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF008LMH bam bam alignments GRCh38 ENCSR983OYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9572/'], '@type': ['Target', 'Item'], 'name': 'NR1D1-human', 'label': 'NR1D1', '@id': '/targets/NR1D1-human/', 'title': 'NR1D1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e8b50f06-81be-4100-866e-47912a10f354', 'status': 'released'} DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF049GKP/, /files/ENCFF509VQG/, /files/ENCFF110MCL/ 3789637500 ENCODE Processing Pipeline 829c35840e747f50290c5de66ea83dd9 https://www.encodeproject.org/files/ENCFF008LMH/@@download/ENCFF008LMH.bam released s3://encode-public/2022/04/01/e01bf95a-dc29-4736-a5d1-28e2fb588ed1/ENCFF008LMH.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF571OYN bam bam alignments GRCh38 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF338WSS/, /files/ENCFF374QGZ/, /files/ENCFF834RYS/, /files/ENCFF173TCS/, /files/ENCFF110MCL/ 5240744402 ENCODE Processing Pipeline fa606d7629d385ffe9cdd51b212697f9 https://www.encodeproject.org/files/ENCFF571OYN/@@download/ENCFF571OYN.bam released s3://encode-public/2020/09/19/9aeb3302-5984-4aa9-a2ec-163b05e4da2a/ENCFF571OYN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF636MKR bam bam alignments GRCh38 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 /files/ENCFF404GDX/, /files/ENCFF110MCL/, /files/ENCFF410OSO/ 2960155523 ENCODE Processing Pipeline 5c3438c59a374247e4feb15b71801744 https://www.encodeproject.org/files/ENCFF636MKR/@@download/ENCFF636MKR.bam released s3://encode-public/2020/09/19/2c7c1c31-9d71-4a00-85df-5944924177bf/ENCFF636MKR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF374QGZ fastq fastq reads ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 1872738484 Bradley Bernstein, Broad b31012f49addc8b3f1aeec9787a3d278 SRA:SRR10838592 https://www.encodeproject.org/files/ENCFF374QGZ/@@download/ENCFF374QGZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/b4c9b86a-e703-4251-9901-6735f82bf2c3/ENCFF374QGZ.fastq.gz ENCFF410OSO fastq fastq reads ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 single-ended 1777983750 Bradley Bernstein, Broad e770d472735c4f2523464c99dee55fab SRA:SRR10838590 https://www.encodeproject.org/files/ENCFF410OSO/@@download/ENCFF410OSO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/52ac5f6e-4090-4e21-bc6f-a9d4f2e4b287/ENCFF410OSO.fastq.gz ENCFF404GDX fastq fastq reads ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 single-ended 1852542722 Bradley Bernstein, Broad e3aabef5d2b6ee1e8f36daefbdd3f31f SRA:SRR10838591 https://www.encodeproject.org/files/ENCFF404GDX/@@download/ENCFF404GDX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/20c18baa-3337-42da-8873-ea4329bb8412/ENCFF404GDX.fastq.gz ENCFF834RYS fastq fastq reads ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 1840891286 Bradley Bernstein, Broad 1df4aba2c9289b6f109ba8f2a48bff30 SRA:SRR10838593 https://www.encodeproject.org/files/ENCFF834RYS/@@download/ENCFF834RYS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/c2ed5e13-dd03-4382-8b11-ead75ef12a5b/ENCFF834RYS.fastq.gz ENCFF173TCS fastq fastq reads ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 1711622464 Bradley Bernstein, Broad 2d3ddd6cdf44ec38c0b40a61493f7781 SRA:SRR10838594 https://www.encodeproject.org/files/ENCFF173TCS/@@download/ENCFF173TCS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/7621c9de-085f-4a5c-b1ff-204879186ffd/ENCFF173TCS.fastq.gz ENCFF338WSS fastq fastq reads ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 1684372082 Bradley Bernstein, Broad 6465f2538c8115a0b37c67e1da6d3468 SRA:SRR10838595 https://www.encodeproject.org/files/ENCFF338WSS/@@download/ENCFF338WSS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/6f19dba2-3e75-4df0-9c3d-49bceb6072c5/ENCFF338WSS.fastq.gz ENCFF369KSF bam bam unfiltered alignments GRCh38 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF404GDX/, /files/ENCFF410OSO/ 3469936784 ENCODE Processing Pipeline f0b67d197282b7c27b8a1488e2e32bb4 https://www.encodeproject.org/files/ENCFF369KSF/@@download/ENCFF369KSF.bam released s3://encode-public/2018/11/27/8d943035-faee-4e16-ae9f-4e54689d1a63/ENCFF369KSF.bam ENCODE3 GRCh38 archived ENCFF386HHN bam bam alignments GRCh38 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF404GDX/, /files/ENCFF410OSO/ 2913778670 ENCODE Processing Pipeline 90ee88f0612748287c7539daa8a33345 https://www.encodeproject.org/files/ENCFF386HHN/@@download/ENCFF386HHN.bam released s3://encode-public/2018/11/27/c690eaf9-b637-453e-920d-790c706b10c3/ENCFF386HHN.bam ENCODE3 GRCh38 archived ENCFF275IXC bam bam unfiltered alignments GRCh38 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF338WSS/, /files/ENCFF643CGH/, /files/ENCFF173TCS/, /files/ENCFF834RYS/, /files/ENCFF374QGZ/ 6678051782 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/files/ENCFF807MUK/, /files/ENCFF404GDX/, /files/ENCFF410OSO/ 3461137833 ENCODE Processing Pipeline de1432da41ca7e053f86ce51e394aa65 https://www.encodeproject.org/files/ENCFF249OAI/@@download/ENCFF249OAI.bam released s3://encode-public/2018/11/27/68358d64-50a0-4397-b7cd-29057ac4c83d/ENCFF249OAI.bam ENCODE3 hg19 archived ENCFF053BBW bam bam alignments hg19 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF404GDX/, /files/ENCFF410OSO/ 2910388702 ENCODE Processing Pipeline 8b6ed9638d4afb0242e72c8d7aa85fd7 https://www.encodeproject.org/files/ENCFF053BBW/@@download/ENCFF053BBW.bam released s3://encode-public/2018/11/27/6b605e50-3048-423f-8212-91fb48552b6f/ENCFF053BBW.bam ENCODE3 hg19 archived ENCFF142BCJ bam bam unfiltered alignments hg19 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 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/human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF338WSS/, /files/ENCFF374QGZ/, /files/ENCFF834RYS/, /files/ENCFF173TCS/, /files/ENCFF110MCL/ 6894016300 ENCODE Processing Pipeline ef58d14e485740116c9414b8676b7059 https://www.encodeproject.org/files/ENCFF852ARS/@@download/ENCFF852ARS.bam released s3://encode-public/2020/09/19/93b2e578-4c07-4e3a-ae7c-3013e3c410ac/ENCFF852ARS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF271JBL bam bam unfiltered alignments GRCh38 ENCSR948DNK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 2 2_1 76 /files/ENCFF404GDX/, /files/ENCFF110MCL/, /files/ENCFF410OSO/ 3513755018 ENCODE Processing Pipeline a3bdf67a40f7cc4498b826d3eaf73138 https://www.encodeproject.org/files/ENCFF271JBL/@@download/ENCFF271JBL.bam released s3://encode-public/2020/09/19/dbb5d4d4-cdb7-4b20-b64c-dd6e9cf26fa3/ENCFF271JBL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF433TZR fastq fastq reads ENCSR771IOP Control ChIP-seq /human-donors/ENCDO763VKT/ EFO:0007598 HAP-1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF044UIT/ 4483712972 Michael Snyder, Stanford d15ca21a4d7e41e8530e70890bbf65f8 SRA:SRR13803887 https://www.encodeproject.org/files/ENCFF433TZR/@@download/ENCFF433TZR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/b9d0a5db-7f59-4207-9f87-702311a7307a/ENCFF433TZR.fastq.gz mild to moderate bottlenecking ENCFF044UIT fastq fastq reads ENCSR771IOP Control ChIP-seq /human-donors/ENCDO763VKT/ EFO:0007598 HAP-1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF433TZR/ 4665377449 Michael Snyder, Stanford 5bb7249cd597c9fc943bf9f402a8a30b SRA:SRR13803887 https://www.encodeproject.org/files/ENCFF044UIT/@@download/ENCFF044UIT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/bf9cd819-0e2d-46f4-9702-fec28ac61e8f/ENCFF044UIT.fastq.gz mild to moderate bottlenecking ENCFF582TTW bam bam unfiltered alignments GRCh38 ENCSR771IOP Control ChIP-seq /human-donors/ENCDO763VKT/ EFO:0007598 HAP-1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF044UIT/, /files/ENCFF433TZR/ 8501051713 ENCODE Processing Pipeline 2d0fd53941bb89bc2d0400d1b1b08a5a https://www.encodeproject.org/files/ENCFF582TTW/@@download/ENCFF582TTW.bam released s3://encode-public/2020/08/20/448ee989-b69e-40bf-ae5f-0866c3e3f8a5/ENCFF582TTW.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF247DSQ bam bam alignments GRCh38 ENCSR771IOP Control ChIP-seq /human-donors/ENCDO763VKT/ EFO:0007598 HAP-1 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF044UIT/, /files/ENCFF433TZR/ 6184125714 ENCODE Processing Pipeline 67d83f9f0dd3385ceeaeed31d034d161 https://www.encodeproject.org/files/ENCFF247DSQ/@@download/ENCFF247DSQ.bam released s3://encode-public/2020/08/20/f8216852-1020-4e25-9b35-626ed1c8880c/ENCFF247DSQ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF079YIZ fastq fastq reads ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 119647959 Michael Snyder, Stanford 6b0ee8c6cf223810c910fd474acf8e86 https://www.encodeproject.org/files/ENCFF079YIZ/@@download/ENCFF079YIZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/41ba5eb8-795d-40b8-b93d-9b240042440b/ENCFF079YIZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF831ILE fastq fastq reads ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 144282963 Michael Snyder, Stanford 080cdaa76deedfe99fae44ccd32dfaef https://www.encodeproject.org/files/ENCFF831ILE/@@download/ENCFF831ILE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b6c6ce76-3e61-462f-8253-75f2d6eeda78/ENCFF831ILE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF574VLP bam bam alignments ce10 ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF079YIZ/, /files/ENCFF831ILE/, /files/ENCFF987UMF/ 342203467 Kevin White, UChicago 4c28552c207a807eabe3f80e261eb2c9 https://www.encodeproject.org/files/ENCFF574VLP/@@download/ENCFF574VLP.bam released s3://encode-public/2016/10/18/db7f8e9f-45c7-4d8f-9596-2f05a9e9a2a0/ENCFF574VLP.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF160IJP bam bam alignments ce11 ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF079YIZ/, /files/ENCFF831ILE/, /files/ENCFF586MOL/ 342600056 Kevin White, UChicago 39672c2837490595d522c0de94125158 https://www.encodeproject.org/files/ENCFF160IJP/@@download/ENCFF160IJP.bam released s3://encode-public/2016/10/18/e3953bf0-01b3-482e-9c09-dd5753651098/ENCFF160IJP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF162SIH bigWig bigWig signal of unique reads ce10 ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF574VLP/ 10067518 Kevin White, UChicago 50c1683084b93557ede7d7b736669ada https://www.encodeproject.org/files/ENCFF162SIH/@@download/ENCFF162SIH.bigWig released s3://encode-public/2016/10/20/22098d02-3e1a-4c99-8962-7c1aaa36d66c/ENCFF162SIH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF446HFA bigWig bigWig read-depth normalized signal ce10 ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF574VLP/ 10029819 Kevin White, UChicago d24a7f74b6f7dab8f38234d556c4c100 https://www.encodeproject.org/files/ENCFF446HFA/@@download/ENCFF446HFA.bigWig released s3://encode-public/2016/10/20/310fa7f8-56ec-4bb6-b120-1ca5386be122/ENCFF446HFA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF714ZWC bigWig bigWig signal of unique reads ce11 ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF160IJP/ 10066619 Kevin White, UChicago 9f2af6e99844826a85c19304cf3a572c https://www.encodeproject.org/files/ENCFF714ZWC/@@download/ENCFF714ZWC.bigWig released s3://encode-public/2016/10/21/98ad3a1b-b9ab-43e6-a6cd-089594d13b39/ENCFF714ZWC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF986JWY bigWig bigWig read-depth normalized signal ce11 ENCSR643FLY Control ChIP-seq /worm-donors/ENCDO103YMR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191620/'], '@type': ['Target', 'Item'], 'name': 'ceh-30-celegans', 'label': 'ceh-30', '@id': '/targets/ceh-30-celegans/', 'title': 'ceh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '349aba08-498d-4a09-ae62-4273ee3962da', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF160IJP/ 10030337 Kevin White, UChicago ad0b5da0b1a4b363e978521288938c3a https://www.encodeproject.org/files/ENCFF986JWY/@@download/ENCFF986JWY.bigWig released s3://encode-public/2016/10/21/583cebf7-c668-4d51-b2f5-12486da2a893/ENCFF986JWY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF147ETI fastq fastq reads ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 172615101 Michael Snyder, Stanford d31c9642b41655834712132804c658df https://www.encodeproject.org/files/ENCFF147ETI/@@download/ENCFF147ETI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/18cee4ab-2465-45cf-b68d-f7cc4fd2dd45/ENCFF147ETI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF476JOR fastq fastq reads ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 140102139 Michael Snyder, Stanford b991df57afc2b3516f6c34913dc82bb8 https://www.encodeproject.org/files/ENCFF476JOR/@@download/ENCFF476JOR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0d573ac8-f744-4b41-bc62-aca78cfda1d1/ENCFF476JOR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF654RRA bam bam alignments ce10 ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF147ETI/, /files/ENCFF476JOR/, /files/ENCFF987UMF/ 410155934 Kevin White, UChicago 207bee828ac43990415e8805b3e006f6 https://www.encodeproject.org/files/ENCFF654RRA/@@download/ENCFF654RRA.bam released s3://encode-public/2016/10/18/c9ec89ff-b8a2-4587-8cf8-af710735150d/ENCFF654RRA.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF748MYT bam bam alignments ce11 ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF147ETI/, /files/ENCFF476JOR/, /files/ENCFF586MOL/ 410573529 Kevin White, UChicago b57285db9623b0e14ba2ab980b406ab9 https://www.encodeproject.org/files/ENCFF748MYT/@@download/ENCFF748MYT.bam released s3://encode-public/2016/10/19/dd84e06a-ddf9-4053-ac39-972623e020ce/ENCFF748MYT.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF566MUA bigWig bigWig signal of unique reads ce10 ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF654RRA/ 10014201 Kevin White, UChicago 0ab1feda3b3f7c5a7c5eda111df63553 https://www.encodeproject.org/files/ENCFF566MUA/@@download/ENCFF566MUA.bigWig released s3://encode-public/2016/10/20/7c8f042c-b567-4199-9a5b-219da7503a3c/ENCFF566MUA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF967WCH bigWig bigWig read-depth normalized signal ce10 ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF654RRA/ 9994646 Kevin White, UChicago 0af095f281d1c77e592a49d5debca849 https://www.encodeproject.org/files/ENCFF967WCH/@@download/ENCFF967WCH.bigWig released s3://encode-public/2016/10/20/8983773d-0994-46c6-b874-d9aad89a4305/ENCFF967WCH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF129FCW bigWig bigWig signal of unique reads ce11 ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF748MYT/ 10010828 Kevin White, UChicago f9f327edf12199f67f4a0e65b9e53088 https://www.encodeproject.org/files/ENCFF129FCW/@@download/ENCFF129FCW.bigWig released s3://encode-public/2016/10/21/1c775e6e-5233-4267-b0a0-0100b22efc7f/ENCFF129FCW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF544SZS bigWig bigWig read-depth normalized signal ce11 ENCSR785WCC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF748MYT/ 9988755 Kevin White, UChicago 53a6ac53a05814c4cb787f4097a62e03 https://www.encodeproject.org/files/ENCFF544SZS/@@download/ENCFF544SZS.bigWig released s3://encode-public/2016/10/21/2507288b-631c-4a31-b57b-e3634f385623/ENCFF544SZS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF325OIP bam bam unfiltered alignments hg19 ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF444LSU/, /files/ENCFF437ZGA/ 3095133219 ENCODE Processing Pipeline 5281f2a549a2e5f6d8d4bafb0df097fe https://www.encodeproject.org/files/ENCFF325OIP/@@download/ENCFF325OIP.bam released s3://encode-public/2018/02/22/aa6af370-2e76-4689-9d04-fb38f84afc1a/ENCFF325OIP.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF437ZGA fastq fastq reads ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1323206151 Kevin White, UChicago c362e705ab0de9516132a331c3d9badb SRA:SRR6212856 https://www.encodeproject.org/files/ENCFF437ZGA/@@download/ENCFF437ZGA.fastq.gz Illumina HiSeq 2000 /files/ENCFF422UWG/ released s3://encode-public/2016/03/14/24fc3125-ad77-45b7-abd4-b48057aad9e6/ENCFF437ZGA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF444LSU fastq fastq reads ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1505491379 Kevin White, UChicago 10227c1ab6295ccf4bfd06b97e214e91 SRA:SRR6212857 https://www.encodeproject.org/files/ENCFF444LSU/@@download/ENCFF444LSU.fastq.gz Illumina HiSeq 2500 /files/ENCFF422UWG/ released s3://encode-public/2016/03/15/a64f2444-c638-4325-82a2-e80da28cb975/ENCFF444LSU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF275QSN bam bam alignments hg19 ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF444LSU/, /files/ENCFF437ZGA/ 2463625072 ENCODE Processing Pipeline f38caa9086195965eecc1b1a61831f15 https://www.encodeproject.org/files/ENCFF275QSN/@@download/ENCFF275QSN.bam released s3://encode-public/2016/04/23/e3d2290a-624a-422b-a8d1-049ef32f26b0/ENCFF275QSN.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF072VHG bam bam unfiltered alignments GRCh38 ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF444LSU/, /files/ENCFF437ZGA/ 3112115697 ENCODE Processing Pipeline 0e651a0164bb4c9b78b4faa772fb3fd7 https://www.encodeproject.org/files/ENCFF072VHG/@@download/ENCFF072VHG.bam released s3://encode-public/2016/05/06/ea87e67a-7f4c-4e64-9cc7-b381e9bd89fc/ENCFF072VHG.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF163QIC bam bam alignments GRCh38 ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF444LSU/, /files/ENCFF437ZGA/ 2463471869 ENCODE Processing Pipeline f3fe89c5f144dd7aa8fc9e36a680e480 https://www.encodeproject.org/files/ENCFF163QIC/@@download/ENCFF163QIC.bam released s3://encode-public/2016/05/06/53dd3c68-9d05-4a22-99be-b10b51e304b5/ENCFF163QIC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF178YHH bam bam alignments GRCh38 ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF437ZGA/, /files/ENCFF444LSU/, /files/ENCFF110MCL/ 2570659888 ENCODE Processing Pipeline 6bf37545d68d2f2c56a73da7d4a1544e https://www.encodeproject.org/files/ENCFF178YHH/@@download/ENCFF178YHH.bam released s3://encode-public/2020/10/27/5c1bb678-8622-4f5a-9e1b-75832444d5fb/ENCFF178YHH.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF448KNF bam bam unfiltered alignments GRCh38 ENCSR158PLQ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF437ZGA/, /files/ENCFF444LSU/, /files/ENCFF110MCL/ 3074235963 ENCODE Processing Pipeline df76a412d69a9bce2bee00ac5e818e9a https://www.encodeproject.org/files/ENCFF448KNF/@@download/ENCFF448KNF.bam released s3://encode-public/2020/10/27/f1a7aa3c-d1c0-4c59-a244-b52a742c9a28/ENCFF448KNF.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF940BDP fastq fastq reads ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 55414448 Michael Snyder, Stanford 429ddfe3a56e094c2879d6466962ce81 https://www.encodeproject.org/files/ENCFF940BDP/@@download/ENCFF940BDP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0d2106ad-ee9a-46d7-a46b-ea485503d6e7/ENCFF940BDP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF274SSM fastq fastq reads ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 30817264 Michael Snyder, Stanford b19154060f5a90c60464c8b9ecfcbc96 https://www.encodeproject.org/files/ENCFF274SSM/@@download/ENCFF274SSM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a3055fe8-5707-49a8-bdaa-8c5936c02556/ENCFF274SSM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF757RIL fastq fastq reads ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 44069326 Michael Snyder, Stanford 6ffc46f0643d0b67532dce62c653a2b6 https://www.encodeproject.org/files/ENCFF757RIL/@@download/ENCFF757RIL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/48d780ea-7365-4735-b007-417f8ef1b457/ENCFF757RIL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF617USB bam bam alignments ce10 ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF940BDP/, /files/ENCFF274SSM/, /files/ENCFF757RIL/, /files/ENCFF987UMF/ 170835621 Kevin White, UChicago a2e0aee20895871545708a6438fe445a https://www.encodeproject.org/files/ENCFF617USB/@@download/ENCFF617USB.bam released s3://encode-public/2017/04/27/9fea1721-c9c2-41bd-875c-e8a5bc0670eb/ENCFF617USB.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF770WYK bam bam alignments ce11 ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF940BDP/, /files/ENCFF274SSM/, /files/ENCFF757RIL/, /files/ENCFF586MOL/ 171008887 Kevin White, UChicago 968a70f0094ae511883851f889d6d3bc https://www.encodeproject.org/files/ENCFF770WYK/@@download/ENCFF770WYK.bam released s3://encode-public/2017/04/27/50504ab7-fc70-4523-b84c-f866e1ccc111/ENCFF770WYK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF781FNK bigWig bigWig read-depth normalized signal ce10 ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF617USB/ 9969440 Kevin White, UChicago f7f96b3a7bda66c0fa0dc24bf63ff8bc https://www.encodeproject.org/files/ENCFF781FNK/@@download/ENCFF781FNK.bigWig released s3://encode-public/2017/04/29/4638d961-a143-4ba4-a678-773e8cd55d2e/ENCFF781FNK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF179DCZ bigWig bigWig signal of unique reads ce10 ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF617USB/ 9962930 Kevin White, UChicago 3c8a7b800a18e3d2c0f62b33a1dff724 https://www.encodeproject.org/files/ENCFF179DCZ/@@download/ENCFF179DCZ.bigWig released s3://encode-public/2017/04/29/937a010e-f320-4338-a1ea-bb8f6b837e82/ENCFF179DCZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF580CRC bigWig bigWig signal of unique reads ce11 ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF770WYK/ 9958149 Kevin White, UChicago 0ae946b15aed371da79c0a46ca44d298 https://www.encodeproject.org/files/ENCFF580CRC/@@download/ENCFF580CRC.bigWig released s3://encode-public/2017/04/29/dcfe5529-aa79-4e2a-8049-be51c200b171/ENCFF580CRC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF146IUN bigWig bigWig read-depth normalized signal ce11 ENCSR938FCA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF770WYK/ 9965143 Kevin White, UChicago 1e2a6dd2ed2721a0c1ac17bd56af4b39 https://www.encodeproject.org/files/ENCFF146IUN/@@download/ENCFF146IUN.bigWig released s3://encode-public/2017/04/29/bd35f929-7192-4dd6-9db2-f19f1379bb08/ENCFF146IUN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF198DVF fastq fastq reads ENCSR269HSO Control ChIP-seq /fly-donors/ENCDO273WUF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41039/'], '@type': ['Target', 'Item'], 'name': 'CG11762-dmelanogaster', 'label': 'CG11762', '@id': '/targets/CG11762-dmelanogaster/', 'title': 'CG11762 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '93573b84-1513-4c75-8c6d-59ad616d4d2c', 'status': 'released'} dm3 3R 8719267 8739997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 276868367 Kevin White, UChicago 546bdb63b371e52d305ecaadfc22df37 https://www.encodeproject.org/files/ENCFF198DVF/@@download/ENCFF198DVF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/50fa91d6-f269-4444-af59-94f10f255a42/ENCFF198DVF.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF623CWQ bam bam alignments dm3 ENCSR269HSO Control ChIP-seq /fly-donors/ENCDO273WUF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41039/'], '@type': ['Target', 'Item'], 'name': 'CG11762-dmelanogaster', 'label': 'CG11762', '@id': '/targets/CG11762-dmelanogaster/', 'title': 'CG11762 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '93573b84-1513-4c75-8c6d-59ad616d4d2c', 'status': 'released'} dm3 3R 8719267 8739997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF198DVF/ 329133267 Kevin White, UChicago d5ea237d24447db820ed89c8735c7af9 https://www.encodeproject.org/files/ENCFF623CWQ/@@download/ENCFF623CWQ.bam released s3://encode-public/2016/04/11/8129faf0-5506-495e-9645-9dd69fe56e8a/ENCFF623CWQ.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF963QQA bigWig bigWig signal of unique reads dm3 ENCSR269HSO Control ChIP-seq /fly-donors/ENCDO273WUF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41039/'], '@type': ['Target', 'Item'], 'name': 'CG11762-dmelanogaster', 'label': 'CG11762', '@id': '/targets/CG11762-dmelanogaster/', 'title': 'CG11762 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '93573b84-1513-4c75-8c6d-59ad616d4d2c', 'status': 'released'} dm3 3R 8719267 8739997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623CWQ/ 14953052 Kevin White, UChicago 5094ef823d448a555d97ef1522f4104c https://www.encodeproject.org/files/ENCFF963QQA/@@download/ENCFF963QQA.bigWig released s3://encode-public/2016/04/11/fb798527-3ad1-43d3-ac8f-4de34d43ee24/ENCFF963QQA.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF017TUZ bigWig bigWig read-depth normalized signal dm3 ENCSR269HSO Control ChIP-seq /fly-donors/ENCDO273WUF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41039/'], '@type': ['Target', 'Item'], 'name': 'CG11762-dmelanogaster', 'label': 'CG11762', '@id': '/targets/CG11762-dmelanogaster/', 'title': 'CG11762 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '93573b84-1513-4c75-8c6d-59ad616d4d2c', 'status': 'released'} dm3 3R 8719267 8739997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623CWQ/ 14965710 Kevin White, UChicago 9bec75717b96d71a61c32d92e3d8372d https://www.encodeproject.org/files/ENCFF017TUZ/@@download/ENCFF017TUZ.bigWig released s3://encode-public/2016/04/11/49cef1b0-4c2a-433e-9820-8cef5193ff6f/ENCFF017TUZ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF627CQJ bam bam alignments dm6 ENCSR269HSO Control ChIP-seq /fly-donors/ENCDO273WUF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41039/'], '@type': ['Target', 'Item'], 'name': 'CG11762-dmelanogaster', 'label': 'CG11762', '@id': '/targets/CG11762-dmelanogaster/', 'title': 'CG11762 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '93573b84-1513-4c75-8c6d-59ad616d4d2c', 'status': 'released'} dm3 3R 8719267 8739997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF198DVF/ 327713524 Kevin White, UChicago 3754c12af27a2baaddb1521acb2b4ebd https://www.encodeproject.org/files/ENCFF627CQJ/@@download/ENCFF627CQJ.bam released s3://encode-public/2016/04/20/98de1438-e031-4c34-83f5-b2fd0c1925e1/ENCFF627CQJ.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF795SAL bigWig bigWig signal of unique reads dm6 ENCSR269HSO Control ChIP-seq /fly-donors/ENCDO273WUF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41039/'], '@type': ['Target', 'Item'], 'name': 'CG11762-dmelanogaster', 'label': 'CG11762', '@id': '/targets/CG11762-dmelanogaster/', 'title': 'CG11762 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '93573b84-1513-4c75-8c6d-59ad616d4d2c', 'status': 'released'} dm3 3R 8719267 8739997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF627CQJ/ 16986811 Kevin White, UChicago f93e2f7e23cd63a0cbbb96dfb8b12c91 https://www.encodeproject.org/files/ENCFF795SAL/@@download/ENCFF795SAL.bigWig released s3://encode-public/2016/06/20/b744122f-cb0c-4fbf-bce6-24be61d97688/ENCFF795SAL.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF679FCK bigWig bigWig read-depth normalized signal dm6 ENCSR269HSO Control ChIP-seq /fly-donors/ENCDO273WUF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41039/'], '@type': ['Target', 'Item'], 'name': 'CG11762-dmelanogaster', 'label': 'CG11762', '@id': '/targets/CG11762-dmelanogaster/', 'title': 'CG11762 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '93573b84-1513-4c75-8c6d-59ad616d4d2c', 'status': 'released'} dm3 3R 8719267 8739997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF627CQJ/ 16998081 Kevin White, UChicago 1a2f6ef08a7ac6db8bb879b73b3f43c9 https://www.encodeproject.org/files/ENCFF679FCK/@@download/ENCFF679FCK.bigWig released s3://encode-public/2016/06/20/01647a32-ccea-4945-ae0f-0db9c4649b8e/ENCFF679FCK.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF447URE fastq fastq reads ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 210088427 Michael Snyder, Stanford 76ef3735c408bfe4ed13e2fe78afe2c7 https://www.encodeproject.org/files/ENCFF447URE/@@download/ENCFF447URE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8b3401d8-e4ad-4f3f-9253-5262623da6d7/ENCFF447URE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF992UWI fastq fastq reads ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 212236212 Michael Snyder, Stanford 46951d92251c06702629a6b55a69cab6 https://www.encodeproject.org/files/ENCFF992UWI/@@download/ENCFF992UWI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f3b375ca-b18a-4f19-9550-0b9f1289170a/ENCFF992UWI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF452WNO bam bam alignments ce10 ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF992UWI/, /files/ENCFF447URE/, /files/ENCFF987UMF/ 552813260 Kevin White, UChicago 4dcd22a20cd589918c316d913e8cb498 https://www.encodeproject.org/files/ENCFF452WNO/@@download/ENCFF452WNO.bam released s3://encode-public/2016/10/18/47923a66-79af-4d79-aefc-c694e3d1140c/ENCFF452WNO.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF136ZRL bam bam alignments ce11 ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF992UWI/, /files/ENCFF447URE/, /files/ENCFF586MOL/ 553461879 Kevin White, UChicago 88ee779b27a14c2799c63e34432cee1b https://www.encodeproject.org/files/ENCFF136ZRL/@@download/ENCFF136ZRL.bam released s3://encode-public/2016/10/19/0b973aa3-9960-46c1-ab77-83c183536ff8/ENCFF136ZRL.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF912NIS bigWig bigWig read-depth normalized signal ce10 ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF452WNO/ 10046268 Kevin White, UChicago adcaf01fa0684d5a3468998e28a13eab https://www.encodeproject.org/files/ENCFF912NIS/@@download/ENCFF912NIS.bigWig released s3://encode-public/2016/10/20/5b34c73a-39df-4d3f-a747-451ea32370cc/ENCFF912NIS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF250KMN bigWig bigWig signal of unique reads ce10 ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF452WNO/ 10004539 Kevin White, UChicago a096d302eef83daa5f8f286da5bd4934 https://www.encodeproject.org/files/ENCFF250KMN/@@download/ENCFF250KMN.bigWig released s3://encode-public/2016/10/20/43fc8bc1-3e44-46e2-b5b6-2506fbf9f9ca/ENCFF250KMN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF963LNX bigWig bigWig read-depth normalized signal ce11 ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF136ZRL/ 10044625 Kevin White, UChicago e9593a22ced4e827f7c7a6d6a8ee97ef https://www.encodeproject.org/files/ENCFF963LNX/@@download/ENCFF963LNX.bigWig released s3://encode-public/2016/10/21/6f3b2308-92ed-45bd-b21a-e32e90d5eea6/ENCFF963LNX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF005TFM bigWig bigWig signal of unique reads ce11 ENCSR452WHZ Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF136ZRL/ 10001279 Kevin White, UChicago 234188f68b593b23300c6d62e4634b07 https://www.encodeproject.org/files/ENCFF005TFM/@@download/ENCFF005TFM.bigWig released s3://encode-public/2016/10/21/630a9401-a4a3-4987-ac59-fe9196d76303/ENCFF005TFM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF758ELE fastq fastq reads ENCSR080NUS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 single-ended 2517469041 Richard Myers, HAIB b5d7a6763f59d1044a9931ac42c2e7fe SRA:SRR14104043 https://www.encodeproject.org/files/ENCFF758ELE/@@download/ENCFF758ELE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2018/04/19/8ea0d1b1-4c81-4061-bdf3-b40bcf9bfb9f/ENCFF758ELE.fastq.gz ENCFF341VXW bam bam unfiltered alignments GRCh38 ENCSR080NUS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF758ELE/ 2562773073 ENCODE Processing Pipeline 98b12ddb01f629db019132da46ee2e41 https://www.encodeproject.org/files/ENCFF341VXW/@@download/ENCFF341VXW.bam released s3://encode-public/2020/04/20/947d699e-515f-4b6c-aed5-a712b85df9c2/ENCFF341VXW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF198XCA bam bam alignments GRCh38 ENCSR080NUS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF758ELE/ 1623576865 ENCODE Processing Pipeline 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3293487b24a5890979e5044c58fd1bdc SRA:SRR6214026 https://www.encodeproject.org/files/ENCFF084TFW/@@download/ENCFF084TFW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/bc565b28-5b1d-4ccc-894a-260d977b2412/ENCFF084TFW.fastq.gz ENCFF521VJP bam bam unfiltered alignments GRCh38 ENCSR827FNU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF084TFW/, /files/ENCFF217QHT/, /files/ENCFF643CGH/ 4664511310 ENCODE Processing Pipeline 74404c3ffb576fc24524572226866f81 https://www.encodeproject.org/files/ENCFF521VJP/@@download/ENCFF521VJP.bam released s3://encode-public/2016/05/06/8ee1a68a-25f7-435e-80e9-4079bd9eed03/ENCFF521VJP.bam ENCODE3 GRCh38 archived ENCFF016UQX bam bam alignments GRCh38 ENCSR827FNU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF084TFW/, /files/ENCFF217QHT/, 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2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF084TFW/, /files/ENCFF217QHT/ 4636097755 ENCODE Processing Pipeline f36472ec5c9a1d8f56379f3e5155a2f0 https://www.encodeproject.org/files/ENCFF309XCK/@@download/ENCFF309XCK.bam released s3://encode-public/2020/06/02/f50ed379-a122-41fd-a89e-650e259a7e96/ENCFF309XCK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF012IMV fastq fastq reads ENCSR770XRC Control ChIP-seq /human-donors/ENCDO423GGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 480602094 Bradley Bernstein, Broad 75a06a5ab0f235b8470d04fba7794b8b SRA:SRR16814160 https://www.encodeproject.org/files/ENCFF012IMV/@@download/ENCFF012IMV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/b7938b90-6f0b-4a7a-aedd-f099c940b0a9/ENCFF012IMV.fastq.gz ENCFF047CGD fastq fastq reads ENCSR770XRC Control ChIP-seq /human-donors/ENCDO423GGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 437690645 Bradley Bernstein, Broad c5ce23480d97819b7765758dd41e1295 SRA:SRR16814156 https://www.encodeproject.org/files/ENCFF047CGD/@@download/ENCFF047CGD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/1e3b3ace-8e52-4d92-82b1-36bef5dcb53f/ENCFF047CGD.fastq.gz ENCFF171LFR fastq fastq reads ENCSR770XRC Control ChIP-seq /human-donors/ENCDO423GGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 452081683 Bradley Bernstein, Broad 830793714f3cc2262908958554a830cb SRA:SRR16814157 https://www.encodeproject.org/files/ENCFF171LFR/@@download/ENCFF171LFR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/35ead429-48bd-49e0-8427-0b6100142753/ENCFF171LFR.fastq.gz ENCFF903KEU fastq fastq reads ENCSR770XRC Control ChIP-seq /human-donors/ENCDO423GGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 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SRA:SRR16814159 https://www.encodeproject.org/files/ENCFF163MAI/@@download/ENCFF163MAI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/cc8e8ca6-a4db-4ffa-8a35-a9afbb95b3c3/ENCFF163MAI.fastq.gz ENCFF210PZF bam bam alignments GRCh38 ENCSR770XRC Control ChIP-seq /human-donors/ENCDO423GGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF171LFR/, /files/ENCFF298SNZ/, /files/ENCFF110MCL/, /files/ENCFF067LRU/, /files/ENCFF047CGD/, /files/ENCFF260WMY/, /files/ENCFF012IMV/, /files/ENCFF163MAI/, /files/ENCFF903KEU/ 3039115196 ENCODE Processing Pipeline 9504956d0e337707d03dddcfa1258074 https://www.encodeproject.org/files/ENCFF210PZF/@@download/ENCFF210PZF.bam released s3://encode-public/2021/06/18/023c22a0-eee2-42e1-8ca0-0e3746b8a2e5/ENCFF210PZF.bam ENCODE4 v1.8.0 GRCh38 released ENCFF104GYS bam bam unfiltered alignments GRCh38 ENCSR770XRC Control ChIP-seq /human-donors/ENCDO423GGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF171LFR/, /files/ENCFF298SNZ/, /files/ENCFF110MCL/, /files/ENCFF067LRU/, /files/ENCFF047CGD/, /files/ENCFF260WMY/, /files/ENCFF012IMV/, /files/ENCFF163MAI/, /files/ENCFF903KEU/ 3621428345 ENCODE Processing Pipeline 27b86fd4b423c2701af67055a8fc2b41 https://www.encodeproject.org/files/ENCFF104GYS/@@download/ENCFF104GYS.bam released s3://encode-public/2021/06/18/957c4a33-82c1-4070-ab99-9e74b1a39908/ENCFF104GYS.bam ENCODE4 v1.8.0 GRCh38 released ENCFF932QQJ fastq fastq reads ENCSR712GVO Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-10-07 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF846JYH/ 6828256645 Michael Snyder, Stanford ece66cf617e1bd15517de02d195b3f82 SRA:SRR14103145 https://www.encodeproject.org/files/ENCFF932QQJ/@@download/ENCFF932QQJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/04/e1da254b-437e-460a-9151-ee01e5ec6461/ENCFF932QQJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF846JYH fastq fastq reads ENCSR712GVO Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-10-07 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF932QQJ/ 7851266448 Michael Snyder, Stanford f3d118735bc48b3a26171225318fd313 SRA:SRR14103145 https://www.encodeproject.org/files/ENCFF846JYH/@@download/ENCFF846JYH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/04/2831db22-a90f-4edd-8320-57a51a04fba1/ENCFF846JYH.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF713BIV bam bam unfiltered alignments GRCh38 ENCSR712GVO Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-10-07 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF932QQJ/, /files/ENCFF846JYH/, /files/ENCFF110MCL/ 11664545718 ENCODE Processing Pipeline 4f3101a268dbf7a3c6ae4461b6abed95 https://www.encodeproject.org/files/ENCFF713BIV/@@download/ENCFF713BIV.bam released s3://encode-public/2020/09/13/82748b51-b6a2-4e88-b6a6-10cd63ac7c66/ENCFF713BIV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF295KVO bam bam alignments GRCh38 ENCSR712GVO Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-10-07 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF932QQJ/, /files/ENCFF846JYH/, /files/ENCFF110MCL/ 6019968060 ENCODE Processing Pipeline ff64e62135096a41581a71d18c234f5f https://www.encodeproject.org/files/ENCFF295KVO/@@download/ENCFF295KVO.bam released s3://encode-public/2020/09/13/08f2cbe6-8623-4c58-825d-971cf9920079/ENCFF295KVO.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF732GLO bam bam unfiltered alignments hg19 ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF598DYO/, /files/ENCFF821AJH/ 7540708591 ENCODE Processing Pipeline cf50b97818cc161488b193a8f3d5144f https://www.encodeproject.org/files/ENCFF732GLO/@@download/ENCFF732GLO.bam released s3://encode-public/2018/02/22/236efd80-0f91-421c-aeb1-b09a546f0178/ENCFF732GLO.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF598DYO fastq fastq reads ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF821AJH/ 3485693244 Michael Snyder, Stanford 0d15f9fcd8ba376c2be6190bf87f8fb5 SRA:SRR5111668 https://www.encodeproject.org/files/ENCFF598DYO/@@download/ENCFF598DYO.fastq.gz Illumina HiSeq 2000 /files/ENCFF224SOH/, /files/ENCFF451VBV/ released s3://encode-public/2016/04/01/855b6448-c9a6-448f-be21-354890c99a76/ENCFF598DYO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF821AJH fastq fastq reads ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF598DYO/ 3477553925 Michael Snyder, Stanford ebaf8640d9372526e05f2d3c00d48e6d SRA:SRR5111668 https://www.encodeproject.org/files/ENCFF821AJH/@@download/ENCFF821AJH.fastq.gz Illumina HiSeq 2000 /files/ENCFF224SOH/, /files/ENCFF451VBV/ released s3://encode-public/2016/04/01/fea0074d-61d8-4c9f-9086-2018446da849/ENCFF821AJH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF523XHJ bam bam alignments hg19 ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF598DYO/, /files/ENCFF821AJH/ 6345796778 ENCODE Processing Pipeline 620cc03c9d9e6f64725590de6e1bf1e5 https://www.encodeproject.org/files/ENCFF523XHJ/@@download/ENCFF523XHJ.bam released s3://encode-public/2016/05/21/ea3f87b0-eed2-48c7-b8b0-ca104b92224f/ENCFF523XHJ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF402FMI bam bam unfiltered alignments GRCh38 ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF598DYO/, /files/ENCFF821AJH/ 7555224793 ENCODE Processing Pipeline 5a617f644774551886cc28ce49da9fec https://www.encodeproject.org/files/ENCFF402FMI/@@download/ENCFF402FMI.bam released s3://encode-public/2016/10/29/686f17fb-3727-494d-9728-1c8178a9a880/ENCFF402FMI.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF458FYW bam bam alignments GRCh38 ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF598DYO/, /files/ENCFF821AJH/ 6347836422 ENCODE Processing Pipeline 8ae14ccd225913e30319c8ad69ba68c4 https://www.encodeproject.org/files/ENCFF458FYW/@@download/ENCFF458FYW.bam released s3://encode-public/2016/10/29/58a81421-c9f3-4848-bffd-9fa4f9e4dc32/ENCFF458FYW.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF876IKP bam bam unfiltered alignments GRCh38 ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF598DYO/, /files/ENCFF821AJH/ 7522873507 ENCODE Processing Pipeline 748c9d7ec469d968d87b4f01b5f68529 https://www.encodeproject.org/files/ENCFF876IKP/@@download/ENCFF876IKP.bam released s3://encode-public/2020/06/02/06ff017e-4bb4-4a52-97ab-ae3171691dd7/ENCFF876IKP.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF568QHH bam bam alignments GRCh38 ENCSR492SGS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2958/'], '@type': ['Target', 'Item'], 'name': 'GTF2A2-human', 'label': 'GTF2A2', '@id': '/targets/GTF2A2-human/', 'title': 'GTF2A2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'a38f083e-4dd4-47ae-a930-098a7490d943', 'status': 'released'} hg19 15 59868277 60086089 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF598DYO/, /files/ENCFF821AJH/ 6279551421 ENCODE Processing Pipeline 767ebdab823347ad13777b7f8ecc0fd1 https://www.encodeproject.org/files/ENCFF568QHH/@@download/ENCFF568QHH.bam released s3://encode-public/2020/06/02/44cb6197-b2a7-4242-8d53-f985c09d503f/ENCFF568QHH.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF706KJZ bam bam unfiltered alignments hg19 ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF144ZOK/, /files/ENCFF514OKS/, /files/ENCFF807MUK/ 11935838570 ENCODE Processing Pipeline 4a722e1354ea6e42df3326eb5af62c01 https://www.encodeproject.org/files/ENCFF706KJZ/@@download/ENCFF706KJZ.bam released s3://encode-public/2018/02/22/78d578d8-e94d-477c-9a0c-d8fd7e582122/ENCFF706KJZ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF144ZOK fastq fastq reads ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF514OKS/ 5645906455 Michael Snyder, Stanford 86ad9421a244696ad610b0e017c75924 SRA:SRR5111141 https://www.encodeproject.org/files/ENCFF144ZOK/@@download/ENCFF144ZOK.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released s3://encode-public/2016/03/31/31e2fabc-6d85-425f-9f61-e205f9ec6437/ENCFF144ZOK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF514OKS fastq fastq reads ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF144ZOK/ 5706331995 Michael Snyder, Stanford 2f13695b6c19857c05aea242da639a91 SRA:SRR5111141 https://www.encodeproject.org/files/ENCFF514OKS/@@download/ENCFF514OKS.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released s3://encode-public/2016/03/31/44e229a5-fcb2-4e06-8ab6-8331df4f5595/ENCFF514OKS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF267TAG bam bam alignments hg19 ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF144ZOK/, /files/ENCFF514OKS/, /files/ENCFF807MUK/ 10035826782 ENCODE Processing Pipeline 675d610a485a151b1b180a59eb54b268 https://www.encodeproject.org/files/ENCFF267TAG/@@download/ENCFF267TAG.bam released s3://encode-public/2016/05/21/f10228f2-c6ca-4727-8877-b562a16a912f/ENCFF267TAG.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF956FKI bam bam unfiltered alignments GRCh38 ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF144ZOK/, /files/ENCFF514OKS/, /files/ENCFF643CGH/ 11958859052 ENCODE Processing Pipeline b96976ae536fceaf13f9af8501260fbb https://www.encodeproject.org/files/ENCFF956FKI/@@download/ENCFF956FKI.bam released s3://encode-public/2016/10/29/6e196acc-e626-4914-ae84-916ec622548e/ENCFF956FKI.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF752BZZ bam bam alignments GRCh38 ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF144ZOK/, /files/ENCFF514OKS/, /files/ENCFF643CGH/ 10045347459 ENCODE Processing Pipeline 498f1ded6062ce5616428064e03eaf8c https://www.encodeproject.org/files/ENCFF752BZZ/@@download/ENCFF752BZZ.bam released s3://encode-public/2016/10/29/9adedd39-6350-4112-acc1-e951281554ea/ENCFF752BZZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF624KEW bam bam alignments GRCh38 ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF144ZOK/, /files/ENCFF514OKS/ 10001617745 ENCODE Processing Pipeline cbce988783973967d8543b476aa2c987 https://www.encodeproject.org/files/ENCFF624KEW/@@download/ENCFF624KEW.bam released s3://encode-public/2020/06/03/ae732e86-79e9-49fd-9c2e-cb7f299ec70e/ENCFF624KEW.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF471SSM bam bam unfiltered alignments GRCh38 ENCSR108OFV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84450/'], '@type': ['Target', 'Item'], 'name': 'ZNF512-human', 'label': 'ZNF512', '@id': '/targets/ZNF512-human/', 'title': 'ZNF512 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '42a83bbd-d316-4a1a-8269-72b564b16738', 'status': 'released'} hg19 2 27794416 27985384 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF144ZOK/, /files/ENCFF514OKS/ 11897573920 ENCODE Processing Pipeline 2623e034d722d3eccf90152bd39037bf https://www.encodeproject.org/files/ENCFF471SSM/@@download/ENCFF471SSM.bam released s3://encode-public/2020/06/03/ffe81afc-53c5-490f-b37c-5bc06b59c124/ENCFF471SSM.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF788LAN fastq fastq reads ENCSR078CBW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF663SAA/ 1393651128 Michael Snyder, Stanford 44eb463647122641c77e38fa2200748f SRA:SRR6212597 https://www.encodeproject.org/files/ENCFF788LAN/@@download/ENCFF788LAN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/f5a5481a-b862-4460-85c8-f6034df3ecc2/ENCFF788LAN.fastq.gz low read depth ENCFF663SAA fastq fastq reads ENCSR078CBW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF788LAN/ 1396537589 Michael Snyder, Stanford 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/files/ENCFF667DOK/, /files/ENCFF252XHQ/, /files/ENCFF110MCL/, /files/ENCFF531MNB/, /files/ENCFF252WND/, /files/ENCFF549HCA/ 4338103110 ENCODE Processing Pipeline e884c6cf59311f13bd77867e53d928ec https://www.encodeproject.org/files/ENCFF809WCM/@@download/ENCFF809WCM.bam released s3://encode-public/2021/09/15/dd9bea6e-8fe9-44a1-a6b8-86f09751953a/ENCFF809WCM.bam ENCODE4 v1.8.0 GRCh38 released ENCFF422MKH bam bam alignments GRCh38 ENCSR040TRJ Control ChIP-seq /human-donors/ENCDO039RUH/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF005AGU/, /files/ENCFF513LTZ/, /files/ENCFF344ZBX/, /files/ENCFF667DOK/, /files/ENCFF252XHQ/, /files/ENCFF110MCL/, /files/ENCFF531MNB/, /files/ENCFF252WND/, /files/ENCFF549HCA/ 3563632952 ENCODE Processing Pipeline 21045ffea753636b92d3f7b12740fa93 https://www.encodeproject.org/files/ENCFF422MKH/@@download/ENCFF422MKH.bam released s3://encode-public/2021/09/15/86bb958a-1d5e-4dbb-918a-8fdcf46391e9/ENCFF422MKH.bam ENCODE4 v1.8.0 GRCh38 released ENCFF093RJH fastq fastq reads ENCSR951GLF Control ChIP-seq /worm-donors/ENCDO599BDC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 183279257 Michael Snyder, Stanford c5c2b2817e71a38bfdb4937e69235d3b https://www.encodeproject.org/files/ENCFF093RJH/@@download/ENCFF093RJH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a816c4d1-d468-4547-9e58-70fb0ac8c929/ENCFF093RJH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF191BNR fastq fastq reads ENCSR951GLF Control ChIP-seq /worm-donors/ENCDO599BDC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA 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'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF191BNR/, /files/ENCFF093RJH/, /files/ENCFF987UMF/ 550229270 Kevin White, UChicago 23f876417f0721991a9fc9e1c5f05a40 https://www.encodeproject.org/files/ENCFF892CIN/@@download/ENCFF892CIN.bam released s3://encode-public/2016/10/18/c4d7bb6a-e10b-4983-84ba-ef9e113fe3ce/ENCFF892CIN.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF893FUO bam bam alignments ce11 ENCSR951GLF Control ChIP-seq /worm-donors/ENCDO599BDC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF191BNR/, /files/ENCFF093RJH/, /files/ENCFF586MOL/ 550812060 Kevin White, UChicago 3c15201943a953884f358f314bcbb7db https://www.encodeproject.org/files/ENCFF893FUO/@@download/ENCFF893FUO.bam released s3://encode-public/2016/10/19/68d4a66e-9193-4726-92da-abba20192573/ENCFF893FUO.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF459ZTX bigWig bigWig read-depth normalized signal ce10 ENCSR951GLF Control ChIP-seq /worm-donors/ENCDO599BDC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF892CIN/ 10052403 Kevin White, UChicago ba0a1b5ef563c4f396bb80f6c8ecae1c https://www.encodeproject.org/files/ENCFF459ZTX/@@download/ENCFF459ZTX.bigWig released s3://encode-public/2016/10/20/6dfdd4cb-c9c0-4eab-b29d-47ddc214603d/ENCFF459ZTX.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF828RHC bigWig bigWig signal of unique reads ce10 ENCSR951GLF Control ChIP-seq /worm-donors/ENCDO599BDC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF892CIN/ 10004169 Kevin White, UChicago f81ae57fd6ad2ab5b1988eff38a17772 https://www.encodeproject.org/files/ENCFF828RHC/@@download/ENCFF828RHC.bigWig released s3://encode-public/2016/10/20/04c58a83-48e8-4334-ae11-5855ae8caf59/ENCFF828RHC.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF311ZJZ bigWig bigWig signal of unique reads ce11 ENCSR951GLF Control ChIP-seq /worm-donors/ENCDO599BDC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF893FUO/ 10001388 Kevin White, UChicago 3cecc80dc5f603ccfca350c52e284699 https://www.encodeproject.org/files/ENCFF311ZJZ/@@download/ENCFF311ZJZ.bigWig released s3://encode-public/2016/10/21/17908d20-716d-4fa5-b39d-cdc9822a42d6/ENCFF311ZJZ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF652BPB bigWig bigWig read-depth normalized signal ce11 ENCSR951GLF Control ChIP-seq /worm-donors/ENCDO599BDC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF893FUO/ 10047117 Kevin White, UChicago b33d3179f327ff77491e6c4be6a65b37 https://www.encodeproject.org/files/ENCFF652BPB/@@download/ENCFF652BPB.bigWig released s3://encode-public/2016/10/21/a31c23b8-d813-4de5-9fa9-a101f69070dc/ENCFF652BPB.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF536BLK fastq fastq reads ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1207714208 Bradley Bernstein, Broad 7a5152ee7c7e51a63652e807e97fed41 SRA:SRR5833178 https://www.encodeproject.org/files/ENCFF536BLK/@@download/ENCFF536BLK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/24d757b7-777e-47b4-be63-1b6883eae764/ENCFF536BLK.fastq.gz ENCFF244KIM fastq fastq reads ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1172565998 Bradley Bernstein, Broad 8ea6558601a5a3e740c10a9d2eb0a025 SRA:SRR5833179 https://www.encodeproject.org/files/ENCFF244KIM/@@download/ENCFF244KIM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/a9ab06d6-5fc5-4211-a4d6-93f873968691/ENCFF244KIM.fastq.gz ENCFF396DKW fastq fastq reads ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1642352289 Bradley Bernstein, Broad a4d16665db9158620e339b6524e4a6bd SRA:SRR5833176 https://www.encodeproject.org/files/ENCFF396DKW/@@download/ENCFF396DKW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/289296a1-7ea3-4aeb-8139-a471776f26c9/ENCFF396DKW.fastq.gz ENCFF823DXS fastq fastq reads ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1647488897 Bradley Bernstein, Broad 2b3cef8c2e2ce3522afe53810ddc884f SRA:SRR5833177 https://www.encodeproject.org/files/ENCFF823DXS/@@download/ENCFF823DXS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/45509a0f-9e10-46e4-9dd4-e6b60070bd07/ENCFF823DXS.fastq.gz ENCFF025UMS bam bam unfiltered alignments GRCh38 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF244KIM/, /files/ENCFF643CGH/, /files/ENCFF396DKW/, /files/ENCFF536BLK/, /files/ENCFF823DXS/ 5304609363 ENCODE Processing Pipeline cac86df498b3ab7fc100ecbe56caf6d0 https://www.encodeproject.org/files/ENCFF025UMS/@@download/ENCFF025UMS.bam released s3://encode-public/2016/10/27/4670b724-0e0a-4d2d-b18f-2dd7ac1f7925/ENCFF025UMS.bam ENCODE3 GRCh38 archived ENCFF419CIS bam bam unfiltered alignments hg19 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF244KIM/, /files/ENCFF807MUK/, /files/ENCFF396DKW/, /files/ENCFF536BLK/, /files/ENCFF823DXS/ 5289845068 ENCODE Processing Pipeline 34103dee1dd268f65a5dca9087339024 https://www.encodeproject.org/files/ENCFF419CIS/@@download/ENCFF419CIS.bam released s3://encode-public/2016/10/27/4ce700e5-e722-4d8f-b6bc-7bee91eb9cfc/ENCFF419CIS.bam ENCODE3 hg19 archived ENCFF493MOQ bam bam alignments hg19 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF244KIM/, /files/ENCFF807MUK/, /files/ENCFF396DKW/, /files/ENCFF536BLK/, /files/ENCFF823DXS/ 4436598264 ENCODE Processing Pipeline f7b3333f95cfd9769e9a012ccbb0485c https://www.encodeproject.org/files/ENCFF493MOQ/@@download/ENCFF493MOQ.bam released s3://encode-public/2016/10/27/12164776-bb93-4966-8890-4d802e135be2/ENCFF493MOQ.bam ENCODE3 hg19 archived ENCFF326UUS bam bam alignments GRCh38 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF244KIM/, /files/ENCFF643CGH/, /files/ENCFF396DKW/, /files/ENCFF536BLK/, /files/ENCFF823DXS/ 4442788314 ENCODE Processing Pipeline 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Illumina HiSeq 2500 released s3://encode-public/2017/07/28/df0188a0-97ec-4fb7-bc7b-8cac887f7856/ENCFF912VFJ.fastq.gz ENCFF275HQY bam bam unfiltered alignments GRCh38 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF912VFJ/, /files/ENCFF723PEI/ 3625060380 ENCODE Processing Pipeline 7a6ea169978dbd57fc47b4f0e6562d05 https://www.encodeproject.org/files/ENCFF275HQY/@@download/ENCFF275HQY.bam released s3://encode-public/2017/08/17/73d84638-fe31-4425-976c-a10a87814a6c/ENCFF275HQY.bam ENCODE3 GRCh38 archived ENCFF429VQL bam bam alignments GRCh38 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF912VFJ/, /files/ENCFF723PEI/ 3089133636 ENCODE Processing Pipeline cc764b6e63757524fb81295a557b8f34 https://www.encodeproject.org/files/ENCFF429VQL/@@download/ENCFF429VQL.bam released s3://encode-public/2017/08/17/84d6ccae-e7fa-45ae-9fad-08b7c18a70e9/ENCFF429VQL.bam ENCODE3 GRCh38 archived ENCFF498OHT bam bam unfiltered alignments hg19 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF912VFJ/, /files/ENCFF723PEI/ 3615321009 ENCODE Processing Pipeline 851f44b61760a85d1ba0b558cd7d5a52 https://www.encodeproject.org/files/ENCFF498OHT/@@download/ENCFF498OHT.bam released s3://encode-public/2017/08/17/256af4dc-be02-4e19-b4e8-b0058a6a4600/ENCFF498OHT.bam ENCODE3 hg19 archived ENCFF779KAY bam bam alignments hg19 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF912VFJ/, /files/ENCFF723PEI/ 3085073081 ENCODE Processing Pipeline 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/files/ENCFF823DXS/, /files/ENCFF110MCL/, /files/ENCFF244KIM/, /files/ENCFF396DKW/ 4550195090 ENCODE Processing Pipeline 58739e1cc7c344c87800e2a70907071a https://www.encodeproject.org/files/ENCFF403FRJ/@@download/ENCFF403FRJ.bam released s3://encode-public/2020/08/20/425ed627-a21c-41b5-8624-9f8a7adc582d/ENCFF403FRJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF709TUG bam bam unfiltered alignments GRCh38 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF723PEI/, /files/ENCFF912VFJ/, /files/ENCFF110MCL/ 3657779708 ENCODE Processing Pipeline e75dd119f83baf23c8bccf8c0e609fca https://www.encodeproject.org/files/ENCFF709TUG/@@download/ENCFF709TUG.bam released s3://encode-public/2020/08/20/4c64e100-b235-42c5-a95a-45776e565339/ENCFF709TUG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF913QUI bam bam alignments GRCh38 ENCSR979XBX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF723PEI/, /files/ENCFF912VFJ/, /files/ENCFF110MCL/ 3153527755 ENCODE Processing Pipeline 8e8928d05bf157cb947a9e9d00a2b1d3 https://www.encodeproject.org/files/ENCFF913QUI/@@download/ENCFF913QUI.bam released s3://encode-public/2020/08/20/d87acf41-9876-4aaa-8238-9b79ecc8db0e/ENCFF913QUI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF544FLC fastq fastq reads ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1907241544 Bradley Bernstein, Broad e71e830e15da608899a2d189534b0628 SRA:SRR5331286 https://www.encodeproject.org/files/ENCFF544FLC/@@download/ENCFF544FLC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/226c8e76-c71b-4dd8-9f88-d83b2790390b/ENCFF544FLC.fastq.gz ENCFF183TQF fastq fastq reads ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1859419827 Bradley Bernstein, Broad 8d8500505e8ef85b3ba98c9841b4adf8 SRA:SRR5331287 https://www.encodeproject.org/files/ENCFF183TQF/@@download/ENCFF183TQF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/f4ac3d07-41b2-4b1e-8900-f41b66126717/ENCFF183TQF.fastq.gz ENCFF110BDU bam bam alignments GRCh38 ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF544FLC/, /files/ENCFF643CGH/, /files/ENCFF183TQF/ 2982762098 ENCODE Processing Pipeline f43d899b830b7556974b1895fcbff55f https://www.encodeproject.org/files/ENCFF110BDU/@@download/ENCFF110BDU.bam released s3://encode-public/2016/10/27/6776a70b-55a3-42b7-afd5-9e061a338526/ENCFF110BDU.bam ENCODE3 GRCh38 archived ENCFF781ZJA bam bam unfiltered alignments GRCh38 ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF544FLC/, /files/ENCFF643CGH/, /files/ENCFF183TQF/ 3560578639 ENCODE Processing Pipeline bca2c0c1e7a0899f08e30b1843a26848 https://www.encodeproject.org/files/ENCFF781ZJA/@@download/ENCFF781ZJA.bam released s3://encode-public/2016/10/27/6f45577f-8508-41b9-9b57-26da56bf4c26/ENCFF781ZJA.bam ENCODE3 GRCh38 archived ENCFF534EIV bam bam unfiltered alignments hg19 ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF544FLC/, /files/ENCFF807MUK/, /files/ENCFF183TQF/ 3551136129 ENCODE Processing Pipeline 7174c6c9d028a72878095d18c64acf7f https://www.encodeproject.org/files/ENCFF534EIV/@@download/ENCFF534EIV.bam released s3://encode-public/2016/10/27/f1a218b7-6725-44c9-8000-01edcb635a5f/ENCFF534EIV.bam ENCODE3 hg19 archived ENCFF422SJW bam bam alignments hg19 ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF544FLC/, /files/ENCFF807MUK/, /files/ENCFF183TQF/ 2978886537 ENCODE Processing Pipeline 1cdefb55da2df582cf482ebfdd4b68e7 https://www.encodeproject.org/files/ENCFF422SJW/@@download/ENCFF422SJW.bam released s3://encode-public/2016/10/27/73b8fb88-d2b5-47e3-9fc3-ccd64050bbb2/ENCFF422SJW.bam ENCODE3 hg19 archived ENCFF714YQM bam bam unfiltered alignments GRCh38 ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF544FLC/, /files/ENCFF183TQF/ 3600491631 ENCODE Processing Pipeline 5acdedc90bb282b15237311dfc8e92df https://www.encodeproject.org/files/ENCFF714YQM/@@download/ENCFF714YQM.bam released s3://encode-public/2020/08/06/6b3db3ef-a8a3-4f08-8452-b944a807badd/ENCFF714YQM.bam ENCODE4 GRCh38 released ENCFF473KLH bam bam alignments GRCh38 ENCSR124GAS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF544FLC/, /files/ENCFF183TQF/ 3047240385 ENCODE Processing Pipeline 1522b7f0a25730764cf2ceedb3a1c14d https://www.encodeproject.org/files/ENCFF473KLH/@@download/ENCFF473KLH.bam released s3://encode-public/2020/08/06/8870d497-cec9-4227-acc8-4c93092f9603/ENCFF473KLH.bam ENCODE4 GRCh38 released ENCFF828TKY fastq fastq reads ENCSR347AVI Control ChIP-seq /worm-donors/ENCDO671BBR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174173/'], '@type': ['Target', 'Item'], 'name': 'T07F8.4-celegans', 'label': 'T07F8.4', '@id': '/targets/T07F8.4-celegans/', 'title': 'T07F8.4 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '8621dcb4-066e-4875-8e18-0c9b9ac24ef6', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 440580276 Kevin White, UChicago 0b2570555713c43733a6a3dd89604243 https://www.encodeproject.org/files/ENCFF828TKY/@@download/ENCFF828TKY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/d3e056ac-dc85-48dc-a5fa-51eb97eb93b9/ENCFF828TKY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF498GST bam bam alignments ce10 ENCSR347AVI Control ChIP-seq /worm-donors/ENCDO671BBR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174173/'], '@type': ['Target', 'Item'], 'name': 'T07F8.4-celegans', 'label': 'T07F8.4', '@id': '/targets/T07F8.4-celegans/', 'title': 'T07F8.4 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '8621dcb4-066e-4875-8e18-0c9b9ac24ef6', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF828TKY/ 639887147 Kevin White, UChicago a08de909c4467ec2a6c328ab899ac179 https://www.encodeproject.org/files/ENCFF498GST/@@download/ENCFF498GST.bam released s3://encode-public/2015/08/07/974643ee-491d-42b8-8126-f7540fd5c87b/ENCFF498GST.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF095VOO bigWig bigWig read-depth normalized signal ce10 ENCSR347AVI Control ChIP-seq /worm-donors/ENCDO671BBR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174173/'], '@type': ['Target', 'Item'], 'name': 'T07F8.4-celegans', 'label': 'T07F8.4', '@id': '/targets/T07F8.4-celegans/', 'title': 'T07F8.4 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '8621dcb4-066e-4875-8e18-0c9b9ac24ef6', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF498GST/ 9992103 Kevin White, UChicago 086c3ae7aca95aec54fabbdaa4435cae https://www.encodeproject.org/files/ENCFF095VOO/@@download/ENCFF095VOO.bigWig released s3://encode-public/2015/10/02/48ac9384-8233-4919-9774-bbecb7a7d5ba/ENCFF095VOO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF861RUR bigWig bigWig signal of unique reads ce10 ENCSR347AVI Control ChIP-seq /worm-donors/ENCDO671BBR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174173/'], '@type': ['Target', 'Item'], 'name': 'T07F8.4-celegans', 'label': 'T07F8.4', '@id': '/targets/T07F8.4-celegans/', 'title': 'T07F8.4 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '8621dcb4-066e-4875-8e18-0c9b9ac24ef6', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF498GST/ 9956148 Kevin White, UChicago 3e77d161309bb2517a52faadcce3bb78 https://www.encodeproject.org/files/ENCFF861RUR/@@download/ENCFF861RUR.bigWig released s3://encode-public/2015/10/02/036089a8-e085-479c-b012-1cf122042c66/ENCFF861RUR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF633JPY bam bam alignments ce11 ENCSR347AVI Control ChIP-seq /worm-donors/ENCDO671BBR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174173/'], '@type': ['Target', 'Item'], 'name': 'T07F8.4-celegans', 'label': 'T07F8.4', '@id': '/targets/T07F8.4-celegans/', 'title': 'T07F8.4 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '8621dcb4-066e-4875-8e18-0c9b9ac24ef6', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF828TKY/ 640419897 Kevin White, UChicago 5953c6357344bb07db50fccae7d79731 https://www.encodeproject.org/files/ENCFF633JPY/@@download/ENCFF633JPY.bam released s3://encode-public/2016/01/20/9d4cc044-1fec-4aef-846a-d574019231d6/ENCFF633JPY.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF757RBS bigWig bigWig signal of unique reads ce11 ENCSR347AVI Control ChIP-seq /worm-donors/ENCDO671BBR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174173/'], '@type': ['Target', 'Item'], 'name': 'T07F8.4-celegans', 'label': 'T07F8.4', '@id': '/targets/T07F8.4-celegans/', 'title': 'T07F8.4 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '8621dcb4-066e-4875-8e18-0c9b9ac24ef6', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF633JPY/ 9954640 Kevin White, UChicago 619f07b5cd1fd06d25716993bb5334b0 https://www.encodeproject.org/files/ENCFF757RBS/@@download/ENCFF757RBS.bigWig released s3://encode-public/2016/02/03/1f877cf3-0bec-494f-9594-bec42536a15e/ENCFF757RBS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF024KXU bigWig bigWig read-depth normalized signal ce11 ENCSR347AVI Control ChIP-seq /worm-donors/ENCDO671BBR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174173/'], '@type': ['Target', 'Item'], 'name': 'T07F8.4-celegans', 'label': 'T07F8.4', '@id': '/targets/T07F8.4-celegans/', 'title': 'T07F8.4 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '8621dcb4-066e-4875-8e18-0c9b9ac24ef6', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF633JPY/ 9990777 Kevin White, UChicago fa0b449e533fcb1768e92f35689c7ee7 https://www.encodeproject.org/files/ENCFF024KXU/@@download/ENCFF024KXU.bigWig released s3://encode-public/2016/02/03/1816feea-7358-4598-a88c-4d249a233713/ENCFF024KXU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF692OGI fastq fastq reads ENCSR637IJM Control ChIP-seq /fly-donors/ENCDO059CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41160/'], '@type': ['Target', 'Item'], 'name': 'CG8301-dmelanogaster', 'label': 'CG8301', '@id': '/targets/CG8301-dmelanogaster/', 'title': 'CG8301 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c17e1e84-ffba-4731-91e7-e565c2e375f1', 'status': 'released'} dm3 3R 5393818 5415804 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 664264256 Kevin White, UChicago 9f8ff5df7681721d79f16e6d0d41aab6 https://www.encodeproject.org/files/ENCFF692OGI/@@download/ENCFF692OGI.fastq.gz Illumina HiSeq 4000 /files/ENCFF027SZK/ released s3://encode-public/2018/05/29/708e3a3c-69ef-4cde-abea-4dfc99b58a5d/ENCFF692OGI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF771ICA fastq fastq reads ENCSR637IJM Control ChIP-seq /fly-donors/ENCDO059CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41160/'], '@type': ['Target', 'Item'], 'name': 'CG8301-dmelanogaster', 'label': 'CG8301', '@id': '/targets/CG8301-dmelanogaster/', 'title': 'CG8301 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c17e1e84-ffba-4731-91e7-e565c2e375f1', 'status': 'released'} dm3 3R 5393818 5415804 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 719084456 Kevin White, UChicago 39faf6d02b58c4c38d7319fd2716e126 https://www.encodeproject.org/files/ENCFF771ICA/@@download/ENCFF771ICA.fastq.gz Illumina HiSeq 4000 /files/ENCFF027SZK/ released s3://encode-public/2018/05/29/e334cdef-e459-4802-be0d-74ca48aa72dc/ENCFF771ICA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF087HBK bam bam alignments dm6 ENCSR637IJM Control ChIP-seq /fly-donors/ENCDO059CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41160/'], '@type': ['Target', 'Item'], 'name': 'CG8301-dmelanogaster', 'label': 'CG8301', '@id': '/targets/CG8301-dmelanogaster/', 'title': 'CG8301 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c17e1e84-ffba-4731-91e7-e565c2e375f1', 'status': 'released'} dm3 3R 5393818 5415804 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF771ICA/, /files/ENCFF692OGI/, /files/ENCFF479RCH/ 1822833915 Kevin White, UChicago a246137bfaf3fb7ee355bdb07cfc8714 https://www.encodeproject.org/files/ENCFF087HBK/@@download/ENCFF087HBK.bam released s3://encode-public/2018/05/29/01a6b72b-1b10-4b0a-b9a4-f862f7a78bd3/ENCFF087HBK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF043LUF bigWig bigWig read-depth normalized signal dm6 ENCSR637IJM Control ChIP-seq /fly-donors/ENCDO059CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41160/'], '@type': ['Target', 'Item'], 'name': 'CG8301-dmelanogaster', 'label': 'CG8301', '@id': '/targets/CG8301-dmelanogaster/', 'title': 'CG8301 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c17e1e84-ffba-4731-91e7-e565c2e375f1', 'status': 'released'} dm3 3R 5393818 5415804 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF087HBK/ 17681766 Kevin White, UChicago 28ad00ce8f4114e45125bbf8081ae361 https://www.encodeproject.org/files/ENCFF043LUF/@@download/ENCFF043LUF.bigWig released s3://encode-public/2018/05/30/cde7a62e-d04a-424d-834f-23847ae3846e/ENCFF043LUF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF125GVD bigWig bigWig signal of unique reads dm6 ENCSR637IJM Control ChIP-seq /fly-donors/ENCDO059CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41160/'], '@type': ['Target', 'Item'], 'name': 'CG8301-dmelanogaster', 'label': 'CG8301', '@id': '/targets/CG8301-dmelanogaster/', 'title': 'CG8301 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c17e1e84-ffba-4731-91e7-e565c2e375f1', 'status': 'released'} dm3 3R 5393818 5415804 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF087HBK/ 17731152 Kevin White, UChicago a0a222fc4b3b577ef5b8f8e474d52f5e https://www.encodeproject.org/files/ENCFF125GVD/@@download/ENCFF125GVD.bigWig released s3://encode-public/2018/05/30/2e29cbac-b94c-490f-aeb4-30b70fa5a9a7/ENCFF125GVD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF757SQE fastq fastq reads ENCSR887YEV Control ChIP-seq /worm-donors/ENCDO418MGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1122652955 Kevin White, UChicago 1714e265aaa82432e66b19b0d66571f3 https://www.encodeproject.org/files/ENCFF757SQE/@@download/ENCFF757SQE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/f5fe6eb9-cbf5-4398-90ee-83755af0eb69/ENCFF757SQE.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF899XTH bam bam alignments ce11 ENCSR887YEV Control ChIP-seq /worm-donors/ENCDO418MGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF757SQE/, /files/ENCFF586MOL/ 1467354596 Kevin White, UChicago 3aa44b0aa3a335695f399c56aa0e3f9c https://www.encodeproject.org/files/ENCFF899XTH/@@download/ENCFF899XTH.bam released s3://encode-public/2018/05/31/30435a69-c1ea-42ce-b9fb-8feb413c497f/ENCFF899XTH.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF210CAA bigWig bigWig signal of unique reads ce11 ENCSR887YEV Control ChIP-seq /worm-donors/ENCDO418MGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF899XTH/ 10022779 Kevin White, UChicago 360be483e0e64311b59df4fe72984507 https://www.encodeproject.org/files/ENCFF210CAA/@@download/ENCFF210CAA.bigWig released s3://encode-public/2018/05/31/21ccb9d2-def5-4f59-a0cf-6600b36545e8/ENCFF210CAA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF785GFV bigWig bigWig read-depth normalized signal ce11 ENCSR887YEV Control ChIP-seq /worm-donors/ENCDO418MGO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} ce11 II 8420207 8420207 DNA 2018-06-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF899XTH/ 9955838 Kevin White, UChicago 28060c1bb7b64a69664746176ada499e https://www.encodeproject.org/files/ENCFF785GFV/@@download/ENCFF785GFV.bigWig released s3://encode-public/2018/05/31/6ec33d72-51c8-4b51-9bd4-0dc6269fb3db/ENCFF785GFV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF216PQG fastq fastq reads ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 273973952 Bradley Bernstein, Broad 15e3c2db14708fae43b5d7e7ecb25322 SRA:SRR13804048 https://www.encodeproject.org/files/ENCFF216PQG/@@download/ENCFF216PQG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/8ea09868-9f9b-4e58-969d-3af5e6427f4d/ENCFF216PQG.fastq.gz inconsistent platforms ENCFF926UGR fastq fastq reads ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 273654011 Bradley Bernstein, Broad 763a032b2b8a7988014dfcaf0e9ef182 SRA:SRR13804049 https://www.encodeproject.org/files/ENCFF926UGR/@@download/ENCFF926UGR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/efe02aeb-9d2b-4b45-b3d5-836d68f8a64b/ENCFF926UGR.fastq.gz inconsistent platforms ENCFF848FUY fastq fastq reads ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 274247546 Bradley Bernstein, Broad a85229a9f10d470cc0e0de5cd32f8810 SRA:SRR13804050 https://www.encodeproject.org/files/ENCFF848FUY/@@download/ENCFF848FUY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/42b00331-6a00-4f9d-9276-a4e509e11a3e/ENCFF848FUY.fastq.gz inconsistent platforms ENCFF568FCX fastq fastq reads ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 273890637 Bradley Bernstein, Broad f5f265e0f881c6e84bdd0da6af8acf2c SRA:SRR13804051 https://www.encodeproject.org/files/ENCFF568FCX/@@download/ENCFF568FCX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/02/f1a35027-50a3-4504-80bb-227b9617ebfa/ENCFF568FCX.fastq.gz inconsistent platforms ENCFF281QRK fastq fastq reads ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 593936785 Bradley Bernstein, Broad be15a24851c2339a3d7a519edd59e455 SRA:SRR13804052 https://www.encodeproject.org/files/ENCFF281QRK/@@download/ENCFF281QRK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/a947e332-88ff-443e-8f50-11c2e3f69594/ENCFF281QRK.fastq.gz inconsistent platforms ENCFF836UKY fastq fastq reads ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 589293141 Bradley Bernstein, Broad 1027421b026ec60561b82951e46a3d86 SRA:SRR13804053 https://www.encodeproject.org/files/ENCFF836UKY/@@download/ENCFF836UKY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/7ca69786-b23b-4c18-9811-8f5e821e7c0d/ENCFF836UKY.fastq.gz inconsistent platforms ENCFF422UNM bam bam unfiltered alignments GRCh38 ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF836UKY/, /files/ENCFF216PQG/, /files/ENCFF568FCX/, /files/ENCFF281QRK/, /files/ENCFF848FUY/, /files/ENCFF110MCL/, /files/ENCFF926UGR/ 2326193635 ENCODE Processing Pipeline 8673bf65fc0fa1c28f6560bb4d46266c https://www.encodeproject.org/files/ENCFF422UNM/@@download/ENCFF422UNM.bam released s3://encode-public/2020/07/19/1424e7bd-dc57-465d-a98b-1e90e49e6778/ENCFF422UNM.bam ENCODE4 v1.5.0 GRCh38 released inconsistent platforms ENCFF619NYP bam bam alignments GRCh38 ENCSR568JFZ Control ChIP-seq /human-donors/ENCDO128KBJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF836UKY/, /files/ENCFF216PQG/, /files/ENCFF568FCX/, /files/ENCFF281QRK/, /files/ENCFF848FUY/, /files/ENCFF110MCL/, /files/ENCFF926UGR/ 1908957518 ENCODE Processing Pipeline 8e821e01ab18dc4ec7ded8bac6ef236b https://www.encodeproject.org/files/ENCFF619NYP/@@download/ENCFF619NYP.bam released s3://encode-public/2020/07/19/1aa75ae5-9034-4b84-8394-f92b0b8fdfad/ENCFF619NYP.bam ENCODE4 v1.5.0 GRCh38 released inconsistent platforms ENCFF009XQW bam bam unfiltered alignments hg19 ENCSR924PBF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF735GUP/ 1307118097 ENCODE Processing Pipeline 8b3c28975393556e6a8605f9341bf8fe https://www.encodeproject.org/files/ENCFF009XQW/@@download/ENCFF009XQW.bam released s3://encode-public/2018/02/22/aea318f5-ee66-4126-8d39-7490860c797f/ENCFF009XQW.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF735GUP fastq fastq reads ENCSR924PBF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 1170347437 Richard Myers, HAIB 0f91ea36c31ab61644e8fd2fb7cef890 SRA:SRR5339566 https://www.encodeproject.org/files/ENCFF735GUP/@@download/ENCFF735GUP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/455f06f9-17ac-4ffe-97a3-8ff58e2a7687/ENCFF735GUP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF714VIM bam bam unfiltered alignments GRCh38 ENCSR924PBF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF735GUP/ 1311309693 ENCODE Processing Pipeline f1c6e524bbaf90c285cbdf47a4591060 https://www.encodeproject.org/files/ENCFF714VIM/@@download/ENCFF714VIM.bam released s3://encode-public/2016/05/06/43851d36-03da-4d0f-a554-ad7c5a68f49a/ENCFF714VIM.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF156BNP bam bam alignments GRCh38 ENCSR924PBF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF735GUP/ 991215226 ENCODE Processing Pipeline 0694cfb4672b68d40e43722000edde28 https://www.encodeproject.org/files/ENCFF156BNP/@@download/ENCFF156BNP.bam released s3://encode-public/2016/05/06/5d84026a-e1f0-47f5-bebc-b4fb81e9f385/ENCFF156BNP.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF847YWA bam bam alignments hg19 ENCSR924PBF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF735GUP/ 991463071 ENCODE Processing Pipeline 81592c107a0c823f885c9405c09c42c4 https://www.encodeproject.org/files/ENCFF847YWA/@@download/ENCFF847YWA.bam released s3://encode-public/2016/05/07/215ad8e7-64ad-4bce-b25b-423cdedd6129/ENCFF847YWA.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF575BAW bam bam unfiltered alignments GRCh38 ENCSR924PBF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF735GUP/ 1294458109 ENCODE Processing Pipeline 182c279c6daae7465025a13cfce019f3 https://www.encodeproject.org/files/ENCFF575BAW/@@download/ENCFF575BAW.bam released s3://encode-public/2020/06/06/b5277a33-e19d-41c0-bec6-cd6f50ca2139/ENCFF575BAW.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF761XES bam bam alignments GRCh38 ENCSR924PBF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF735GUP/ 1029515265 ENCODE Processing Pipeline d75a14cf0ce29ea8073b364f10842507 https://www.encodeproject.org/files/ENCFF761XES/@@download/ENCFF761XES.bam released s3://encode-public/2020/06/06/b645526d-032a-4eff-859f-9efe2ad2f238/ENCFF761XES.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF169IFR fastq fastq reads ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 single-ended 1804039191 Bradley Bernstein, Broad 03baae885bc65ae70fce81ed2429f491 SRA:SRR5331495 https://www.encodeproject.org/files/ENCFF169IFR/@@download/ENCFF169IFR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/c63331d4-f553-465b-87e2-80b7aae4e9d9/ENCFF169IFR.fastq.gz ENCFF694XOO fastq fastq reads ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 single-ended 907571491 Bradley Bernstein, Broad 39669c21d20930c3cd79901ea70c4119 SRA:SRR5331496 https://www.encodeproject.org/files/ENCFF694XOO/@@download/ENCFF694XOO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/95c34b76-6920-4d6d-90d3-64d35ab6b905/ENCFF694XOO.fastq.gz ENCFF098NQZ fastq fastq reads ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 single-ended 884514677 Bradley Bernstein, Broad 2f8d125378b21da9ad1ce9078d427bfe SRA:SRR5331497 https://www.encodeproject.org/files/ENCFF098NQZ/@@download/ENCFF098NQZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/b80526cc-8b97-4090-9810-32c049ebb719/ENCFF098NQZ.fastq.gz ENCFF881SJD bam bam unfiltered alignments GRCh38 ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF169IFR/, /files/ENCFF098NQZ/, /files/ENCFF643CGH/, /files/ENCFF694XOO/ 3784246093 ENCODE Processing Pipeline 4b59aa38aee3c466ec6d0aa408474e53 https://www.encodeproject.org/files/ENCFF881SJD/@@download/ENCFF881SJD.bam released s3://encode-public/2016/10/30/9f3756e3-8b2f-45a5-a567-8854f12d9f96/ENCFF881SJD.bam ENCODE3 GRCh38 archived ENCFF901HZC bam bam alignments GRCh38 ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF169IFR/, /files/ENCFF098NQZ/, /files/ENCFF643CGH/, /files/ENCFF694XOO/ 3088813060 ENCODE Processing Pipeline bca151da5705713ae3c9ae621c352b3d https://www.encodeproject.org/files/ENCFF901HZC/@@download/ENCFF901HZC.bam released s3://encode-public/2016/10/30/e13eb74e-e32e-4800-ad4a-2ca613150054/ENCFF901HZC.bam ENCODE3 GRCh38 archived ENCFF280YQN bam bam unfiltered alignments hg19 ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF169IFR/, /files/ENCFF098NQZ/, /files/ENCFF807MUK/, /files/ENCFF694XOO/ 3772816254 ENCODE Processing Pipeline c7bd0e1df871f599930f419fb5de2fba https://www.encodeproject.org/files/ENCFF280YQN/@@download/ENCFF280YQN.bam released s3://encode-public/2016/10/30/4e826e86-d791-439d-9508-c3d3d86adaf3/ENCFF280YQN.bam ENCODE3 hg19 archived ENCFF264DFJ bam bam alignments hg19 ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF169IFR/, /files/ENCFF098NQZ/, /files/ENCFF807MUK/, /files/ENCFF694XOO/ 3083917091 ENCODE Processing Pipeline adbbf94945f27396797823914cfaa342 https://www.encodeproject.org/files/ENCFF264DFJ/@@download/ENCFF264DFJ.bam released s3://encode-public/2016/10/30/35eb932c-1666-4274-8388-7c76ec2b4b24/ENCFF264DFJ.bam ENCODE3 hg19 archived ENCFF289GAO bam bam alignments GRCh38 ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF694XOO/, /files/ENCFF169IFR/, /files/ENCFF098NQZ/, /files/ENCFF110MCL/ 3155524939 ENCODE Processing Pipeline 94693211c4b84a098517fc1fbead9f70 https://www.encodeproject.org/files/ENCFF289GAO/@@download/ENCFF289GAO.bam released s3://encode-public/2020/08/20/d74c7517-f7ff-4fb1-913f-d92af28759c2/ENCFF289GAO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF980PKQ bam bam unfiltered alignments GRCh38 ENCSR266XMB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF694XOO/, /files/ENCFF169IFR/, /files/ENCFF098NQZ/, /files/ENCFF110MCL/ 3829255387 ENCODE Processing Pipeline 3f9fb03baee51fb94ae4af3e98b78e7c https://www.encodeproject.org/files/ENCFF980PKQ/@@download/ENCFF980PKQ.bam released s3://encode-public/2020/08/20/38608459-bc9d-4fc8-9078-ab7672a8c2a9/ENCFF980PKQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF002BGB fastq fastq reads ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 single-ended 2191067332 Richard Myers, HAIB f2e3e2ab1506a9b95addf14b2dfa6f3c SRA:SRR5339660 https://www.encodeproject.org/files/ENCFF002BGB/@@download/ENCFF002BGB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/4/5/e4efa196-a6bb-4ee8-a1e6-5f43f24ac934/ENCFF002BGB.fastq.gz ENCFF092ACZ bam bam alignments hg19 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF002BGB/ 1761073622 ENCODE Processing Pipeline b6b9987a04b0d60e75b068f5bf252102 https://www.encodeproject.org/files/ENCFF092ACZ/@@download/ENCFF092ACZ.bam released s3://encode-public/2015/10/28/3b2605e3-3999-4a1a-b0b0-40b8a86b72e2/ENCFF092ACZ.bam ENCODE3 hg19 archived ENCFF588EWX bam bam unfiltered alignments GRCh38 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF002BGB/ 2343364841 ENCODE Processing Pipeline c49eb655c7a0e1100dc414664b104dd2 https://www.encodeproject.org/files/ENCFF588EWX/@@download/ENCFF588EWX.bam released s3://encode-public/2016/04/19/839a1b5f-ff0e-4858-aab4-4edeaf2df8b5/ENCFF588EWX.bam ENCODE3 GRCh38 archived ENCFF696ZGZ bam bam alignments GRCh38 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF002BGB/ 1760791024 ENCODE Processing Pipeline 2f412d45286163dc8e701e2f67bd18d1 https://www.encodeproject.org/files/ENCFF696ZGZ/@@download/ENCFF696ZGZ.bam released s3://encode-public/2016/05/05/2a028be7-4bf1-4b0e-8cd2-ccd797bcd007/ENCFF696ZGZ.bam ENCODE3 GRCh38 archived ENCFF583ZWN bam bam unfiltered alignments hg19 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF002BGB/ 2336265916 ENCODE Processing Pipeline d88d09b0651d0fa7f51ae5b079faaf58 https://www.encodeproject.org/files/ENCFF583ZWN/@@download/ENCFF583ZWN.bam released s3://encode-public/2016/09/06/4c57c1a6-7c02-4c48-8df4-7d796ce8c901/ENCFF583ZWN.bam ENCODE3 hg19 archived ENCFF194WGW bam bam unfiltered alignments GRCh38 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF002BGB/ 2343364876 ENCODE Processing Pipeline 9fe4d29dec87bbd776b3c35268dff44b https://www.encodeproject.org/files/ENCFF194WGW/@@download/ENCFF194WGW.bam released s3://encode-public/2016/10/29/3cdf70e3-e2f8-416e-9fdb-e91787da8a44/ENCFF194WGW.bam ENCODE3 GRCh38 archived ENCFF285EWB bam bam alignments GRCh38 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF002BGB/ 1760791057 ENCODE Processing Pipeline 06e2c3184f6ba8f5347e29983433d07a https://www.encodeproject.org/files/ENCFF285EWB/@@download/ENCFF285EWB.bam released s3://encode-public/2016/10/29/b2a91a3c-cfeb-4f42-8a64-050dbf45e8c5/ENCFF285EWB.bam ENCODE3 GRCh38 archived ENCFF124ZWQ bam bam unfiltered alignments GRCh38 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF002BGB/ 2339356339 ENCODE Processing Pipeline ea89a743ddcc9f2ee80352fd40bc09ff https://www.encodeproject.org/files/ENCFF124ZWQ/@@download/ENCFF124ZWQ.bam released s3://encode-public/2020/11/05/8357811e-68c9-4756-af33-8fbe6fc93323/ENCFF124ZWQ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF244VAF bam bam alignments GRCh38 ENCSR996HUG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF002BGB/ 1832367469 ENCODE Processing Pipeline 7c3b24830e806df0e03d9b90a47cb5f3 https://www.encodeproject.org/files/ENCFF244VAF/@@download/ENCFF244VAF.bam released s3://encode-public/2020/11/05/50b4468a-96fd-4e8e-b109-105c3a2330fb/ENCFF244VAF.bam ENCODE4 v1.6.1 GRCh38 released ENCFF919YIJ fastq fastq reads ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF957VLE/ 1839310822 Michael Snyder, Stanford 662aa9063ae4f2c57ad9442d59186b9a SRA:SRR8660038 https://www.encodeproject.org/files/ENCFF919YIJ/@@download/ENCFF919YIJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/178ed7ba-73d5-4457-bf8f-c19e60cd1e3c/ENCFF919YIJ.fastq.gz low read depth ENCFF957VLE fastq fastq reads ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF919YIJ/ 1802243291 Michael Snyder, Stanford 88a6a6e6c4366f7285afc42b83c3dd7a SRA:SRR8660038 https://www.encodeproject.org/files/ENCFF957VLE/@@download/ENCFF957VLE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/d17127d8-cde5-46ed-8bb3-09c1fd153492/ENCFF957VLE.fastq.gz low read depth ENCFF602TNO bam bam unfiltered alignments GRCh38 ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF919YIJ/, /files/ENCFF643CGH/, /files/ENCFF957VLE/ 4132087371 ENCODE Processing Pipeline 7f68ce928faad5685f934825d6fbdd56 https://www.encodeproject.org/files/ENCFF602TNO/@@download/ENCFF602TNO.bam released s3://encode-public/2016/05/06/9077466b-7bee-4364-ae57-e78001dcf61a/ENCFF602TNO.bam ENCODE3 GRCh38 archived low read depth ENCFF182FSP bam bam alignments GRCh38 ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF919YIJ/, /files/ENCFF643CGH/, /files/ENCFF957VLE/ 3462249599 ENCODE Processing Pipeline 969ef8e85268e1a6188fc6e312821e18 https://www.encodeproject.org/files/ENCFF182FSP/@@download/ENCFF182FSP.bam released s3://encode-public/2016/05/06/5b05e257-b1a0-4f86-a07c-2c4451cc3d71/ENCFF182FSP.bam ENCODE3 GRCh38 archived low read depth ENCFF366RVT bam bam unfiltered alignments hg19 ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF919YIJ/, /files/ENCFF807MUK/, /files/ENCFF957VLE/ 4124485820 ENCODE Processing Pipeline 960ca4505cc8260254264f7c2f495e65 https://www.encodeproject.org/files/ENCFF366RVT/@@download/ENCFF366RVT.bam released s3://encode-public/2016/12/06/d35647ac-414a-42d8-8134-b066397c96ac/ENCFF366RVT.bam ENCODE3 hg19 archived low read depth ENCFF507ADG bam bam alignments hg19 ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF919YIJ/, /files/ENCFF807MUK/, /files/ENCFF957VLE/ 3457234163 ENCODE Processing Pipeline ee3fa92826dc81899df766bb601bd401 https://www.encodeproject.org/files/ENCFF507ADG/@@download/ENCFF507ADG.bam released s3://encode-public/2016/12/06/eedbf8ed-16c5-4b22-80ca-3edf4bf5776b/ENCFF507ADG.bam ENCODE3 hg19 archived low read depth ENCFF020QQS bam bam unfiltered alignments GRCh38 ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF919YIJ/, /files/ENCFF110MCL/, /files/ENCFF957VLE/ 4109851399 ENCODE Processing Pipeline c35cda9761f9633d9c10b1ecd68cc24f https://www.encodeproject.org/files/ENCFF020QQS/@@download/ENCFF020QQS.bam released s3://encode-public/2020/06/13/fdd85103-1890-4fb3-8e2b-ec3af030d129/ENCFF020QQS.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF593JQQ bam bam alignments GRCh38 ENCSR607EOD Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF919YIJ/, /files/ENCFF110MCL/, /files/ENCFF957VLE/ 3396130412 ENCODE Processing Pipeline 6930875362e2cf1df647e1d27493495c https://www.encodeproject.org/files/ENCFF593JQQ/@@download/ENCFF593JQQ.bam released s3://encode-public/2020/06/13/37e1cf17-46db-4811-b17d-ea6e3f742a0c/ENCFF593JQQ.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF931YEK bam bam alignments dm3 ENCSR685RPG Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF339ABT/ 776803981 Kevin White, UChicago 120ff76abedc5405ba29195cfe3518f3 https://www.encodeproject.org/files/ENCFF931YEK/@@download/ENCFF931YEK.bam released s3://encode-public/2016/04/11/af05754b-4864-432b-9378-76d49a24490b/ENCFF931YEK.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF965TFY bigWig bigWig read-depth normalized signal dm3 ENCSR685RPG Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF931YEK/ 15372560 Kevin White, UChicago af239e3127c75ec5ea0a36663df64029 https://www.encodeproject.org/files/ENCFF965TFY/@@download/ENCFF965TFY.bigWig released s3://encode-public/2016/04/11/218fab37-124b-40be-8a94-83c527ca4b3e/ENCFF965TFY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF911JWT bigWig bigWig signal of unique reads dm3 ENCSR685RPG Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF931YEK/ 15313010 Kevin White, UChicago 4f9cc28148359c6c62062affb68e0a27 https://www.encodeproject.org/files/ENCFF911JWT/@@download/ENCFF911JWT.bigWig released s3://encode-public/2016/04/11/82c3ec92-dae4-4bf3-aab5-d77fe67cd652/ENCFF911JWT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF339ABT fastq fastq reads ENCSR685RPG Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 626806482 Kevin White, UChicago 46089a40e7366c471448a05bf6fceb8b https://www.encodeproject.org/files/ENCFF339ABT/@@download/ENCFF339ABT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/1126c68c-2d83-408a-91a8-f6bda8d4849a/ENCFF339ABT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF347EUE bigWig bigWig signal of unique reads dm6 ENCSR685RPG Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF247MBB/ 17393059 Kevin White, UChicago 115ffb4cdcf998e63f18b50a05c111cc https://www.encodeproject.org/files/ENCFF347EUE/@@download/ENCFF347EUE.bigWig released s3://encode-public/2016/06/20/b713bc2d-b0e0-46f3-8336-f5fdf91d79fb/ENCFF347EUE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF247MBB bam bam alignments dm6 ENCSR685RPG Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF339ABT/ 773218646 Kevin White, UChicago 8d0e5b058dcae008c2a940df1e8ed0df https://www.encodeproject.org/files/ENCFF247MBB/@@download/ENCFF247MBB.bam released s3://encode-public/2016/04/21/e70a5d80-60b9-4585-9161-559eb0a4414f/ENCFF247MBB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF361BVX bigWig bigWig read-depth normalized signal dm6 ENCSR685RPG Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF247MBB/ 17464966 Kevin White, UChicago be87db6d5b7f7606d46e140767f96883 https://www.encodeproject.org/files/ENCFF361BVX/@@download/ENCFF361BVX.bigWig released s3://encode-public/2016/06/20/bea75eb9-f353-46b6-9105-068636d83734/ENCFF361BVX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF285IGT fastq fastq reads ENCSR559HIP Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 286892921 Kevin White, UChicago 5d4252411f0b17468e01161da20051d6 https://www.encodeproject.org/files/ENCFF285IGT/@@download/ENCFF285IGT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/ad9eee70-2dcb-4a74-94d1-482c34f74fa2/ENCFF285IGT.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF043DGE bam bam alignments ce10 ENCSR559HIP Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF285IGT/ 413044401 Kevin White, UChicago 9a2b28888a2d8f427b9814ff4e384a31 https://www.encodeproject.org/files/ENCFF043DGE/@@download/ENCFF043DGE.bam released s3://encode-public/2015/08/07/d48d6438-56bc-43a7-b68b-d116df466114/ENCFF043DGE.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF149DOV bigWig bigWig signal of unique reads ce10 ENCSR559HIP Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF043DGE/ 10015571 Kevin White, UChicago 39c1d495cbd8a72804c6f32e6950befc https://www.encodeproject.org/files/ENCFF149DOV/@@download/ENCFF149DOV.bigWig released s3://encode-public/2015/10/02/ca4193b3-f0a4-49a7-8056-68f4ce47b36d/ENCFF149DOV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF686GJW bigWig bigWig read-depth normalized signal ce10 ENCSR559HIP Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF043DGE/ 9946892 Kevin White, UChicago 309780592dd9b6b92af034b69a93eafe https://www.encodeproject.org/files/ENCFF686GJW/@@download/ENCFF686GJW.bigWig released s3://encode-public/2015/10/02/da9583c1-081e-422c-ae37-aff9dffc1350/ENCFF686GJW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF684QYD bam bam alignments ce11 ENCSR559HIP Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF285IGT/ 413388723 Kevin White, UChicago a7b3f5f31d290eb2cfdd3deabdac3484 https://www.encodeproject.org/files/ENCFF684QYD/@@download/ENCFF684QYD.bam released s3://encode-public/2016/01/20/032c32d2-50b0-406a-a644-4ec3a91283d4/ENCFF684QYD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF117YQL bigWig bigWig signal of unique reads ce11 ENCSR559HIP Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF684QYD/ 10014486 Kevin White, UChicago 3580ae2765aeae0c6bf37d816e657a82 https://www.encodeproject.org/files/ENCFF117YQL/@@download/ENCFF117YQL.bigWig released s3://encode-public/2016/02/03/96fff7ca-4b21-421d-ac40-44beb7d6621e/ENCFF117YQL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF462BES bigWig bigWig read-depth normalized signal ce11 ENCSR559HIP Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF684QYD/ 9943636 Kevin White, UChicago be70afd42c67a4f95addffa23c589cf0 https://www.encodeproject.org/files/ENCFF462BES/@@download/ENCFF462BES.bigWig released s3://encode-public/2016/02/03/97d06578-3364-4cae-872c-f3d8c0b1a03a/ENCFF462BES.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF244NJF fastq fastq reads ENCSR784CLT Control ChIP-seq /worm-donors/ENCDO299WKN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179793/'], '@type': ['Target', 'Item'], 'name': 'C34B4.2-celegans', 'label': 'C34B4.2', '@id': '/targets/C34B4.2-celegans/', 'title': 'C34B4.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dbbcd192-5731-45d7-9305-3ac086bd11b9', 'status': 'released'} ce11 V 13069827 13103033 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1309801475 Kevin White, UChicago 2c1254ad27d8498a73ad72ec927af3d1 https://www.encodeproject.org/files/ENCFF244NJF/@@download/ENCFF244NJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/07baa4bf-af42-4787-b224-89d54062caab/ENCFF244NJF.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF090HYG bam bam alignments ce10 ENCSR784CLT Control ChIP-seq /worm-donors/ENCDO299WKN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': 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elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179793/'], '@type': ['Target', 'Item'], 'name': 'C34B4.2-celegans', 'label': 'C34B4.2', '@id': '/targets/C34B4.2-celegans/', 'title': 'C34B4.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dbbcd192-5731-45d7-9305-3ac086bd11b9', 'status': 'released'} ce11 V 13069827 13103033 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF244NJF/ 1683246932 Kevin White, UChicago 5d194b335a43b4888ad7c86b060f92ca https://www.encodeproject.org/files/ENCFF117AYO/@@download/ENCFF117AYO.bam released s3://encode-public/2017/10/06/28c50859-58a3-4b6e-8c03-be56a70d08f3/ENCFF117AYO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF722EXG bigWig bigWig read-depth normalized signal ce10 ENCSR784CLT Control ChIP-seq /worm-donors/ENCDO299WKN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179793/'], '@type': ['Target', 'Item'], 'name': 'C34B4.2-celegans', 'label': 'C34B4.2', '@id': '/targets/C34B4.2-celegans/', 'title': 'C34B4.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dbbcd192-5731-45d7-9305-3ac086bd11b9', 'status': 'released'} ce11 V 13069827 13103033 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF090HYG/ 9950689 Kevin White, UChicago 713a96581f9ece7af4896f7d84915151 https://www.encodeproject.org/files/ENCFF722EXG/@@download/ENCFF722EXG.bigWig released s3://encode-public/2017/10/09/e920ed19-57ce-4cba-828f-e9c0b0cb2221/ENCFF722EXG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF472QBS bigWig bigWig signal of unique reads ce10 ENCSR784CLT Control ChIP-seq /worm-donors/ENCDO299WKN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179793/'], '@type': ['Target', 'Item'], 'name': 'C34B4.2-celegans', 'label': 'C34B4.2', '@id': '/targets/C34B4.2-celegans/', 'title': 'C34B4.2 (Caenorhabditis 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'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179793/'], '@type': ['Target', 'Item'], 'name': 'C34B4.2-celegans', 'label': 'C34B4.2', '@id': '/targets/C34B4.2-celegans/', 'title': 'C34B4.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dbbcd192-5731-45d7-9305-3ac086bd11b9', 'status': 'released'} ce11 V 13069827 13103033 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF117AYO/ 9946651 Kevin White, UChicago e5655c1695ee19439c1ba6b72f442cc9 https://www.encodeproject.org/files/ENCFF961FOP/@@download/ENCFF961FOP.bigWig released s3://encode-public/2017/10/09/dd1f15e3-864b-40d9-93bb-df8b6973407e/ENCFF961FOP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF461JZP bigWig bigWig signal of unique reads ce11 ENCSR784CLT Control ChIP-seq /worm-donors/ENCDO299WKN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179793/'], '@type': ['Target', 'Item'], 'name': 'C34B4.2-celegans', 'label': 'C34B4.2', '@id': '/targets/C34B4.2-celegans/', 'title': 'C34B4.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dbbcd192-5731-45d7-9305-3ac086bd11b9', 'status': 'released'} ce11 V 13069827 13103033 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF117AYO/ 9996829 Kevin White, UChicago 27e38501fd39c6021d7e8307d76866e2 https://www.encodeproject.org/files/ENCFF461JZP/@@download/ENCFF461JZP.bigWig released s3://encode-public/2017/10/09/de53945b-9596-4b3a-814a-6a05cfd597b7/ENCFF461JZP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF183EPG bam bam unfiltered alignments hg19 ENCSR204BLL Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF527ZQY/ 1820332907 ENCODE Processing Pipeline af021782513c6d4f990f72bb8731a94a https://www.encodeproject.org/files/ENCFF183EPG/@@download/ENCFF183EPG.bam released s3://encode-public/2018/02/21/9d08356f-867d-4746-9442-0523bef34ebd/ENCFF183EPG.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF527ZQY fastq fastq reads ENCSR204BLL Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 1611818754 Richard Myers, HAIB e6593c54328173c30d08c495b2614164 SRA:SRR5331435 https://www.encodeproject.org/files/ENCFF527ZQY/@@download/ENCFF527ZQY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/e0ad7fe1-67f7-49aa-9fe5-6bd29711ac31/ENCFF527ZQY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF515ZHR bam bam unfiltered alignments GRCh38 ENCSR204BLL Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF527ZQY/ 1827252660 ENCODE Processing Pipeline 3a7c915e714d0e7238d0e2513ad2fd79 https://www.encodeproject.org/files/ENCFF515ZHR/@@download/ENCFF515ZHR.bam released s3://encode-public/2016/05/06/d92ae958-25b4-4697-b0bc-bfea791caab8/ENCFF515ZHR.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF291JPZ bam bam alignments GRCh38 ENCSR204BLL Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 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'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF527ZQY/ 1339676507 ENCODE Processing Pipeline adc50b5da4822188df83b31b0b08c7fa https://www.encodeproject.org/files/ENCFF078CCC/@@download/ENCFF078CCC.bam released s3://encode-public/2016/05/07/c19e316b-d65b-445c-abb7-2e40a205bde2/ENCFF078CCC.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF681UXV bam bam alignments GRCh38 ENCSR204BLL Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF527ZQY/ 1375876018 ENCODE Processing Pipeline ae553199a093a9dc85d2ffbab9b1ed9f https://www.encodeproject.org/files/ENCFF681UXV/@@download/ENCFF681UXV.bam released s3://encode-public/2020/06/25/717569c6-588b-47df-9176-815fbd165dbc/ENCFF681UXV.bam ENCODE4 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF334IVO bam bam unfiltered alignments GRCh38 ENCSR204BLL Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF527ZQY/ 1821579580 ENCODE Processing Pipeline 793331e2a6ec3867bf5669df5b12e04a https://www.encodeproject.org/files/ENCFF334IVO/@@download/ENCFF334IVO.bam released s3://encode-public/2020/06/25/8c36e017-9216-4ea3-a8f6-bbf64d9f8f01/ENCFF334IVO.bam ENCODE4 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF337NNX fastq fastq reads ENCSR433UJZ Control ChIP-seq /worm-donors/ENCDO000FMG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173019/'], '@type': ['Target', 'Item'], 'name': 'madf-2-celegans', 'label': 'madf-2', '@id': '/targets/madf-2-celegans/', 'title': 'madf-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e3bb1cc1-c472-4b4a-9d9e-f8946ff479df', 'status': 'released'} ce11 I 11269689 11305922 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1429280257 Kevin White, UChicago 7d0690dc6b5ef7a26e94fe83c5ca78e8 https://www.encodeproject.org/files/ENCFF337NNX/@@download/ENCFF337NNX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/10/05/79eb884b-7eaf-47c1-8dac-4948774d9d15/ENCFF337NNX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF480LRG bam bam alignments ce10 ENCSR433UJZ Control ChIP-seq /worm-donors/ENCDO000FMG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173019/'], '@type': ['Target', 'Item'], 'name': 'madf-2-celegans', 'label': 'madf-2', '@id': '/targets/madf-2-celegans/', 'title': 'madf-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e3bb1cc1-c472-4b4a-9d9e-f8946ff479df', 'status': 'released'} ce11 I 11269689 11305922 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF337NNX/ 1677653504 Kevin White, UChicago 3ad26a2b8c92b3d319112f54b771fba0 https://www.encodeproject.org/files/ENCFF480LRG/@@download/ENCFF480LRG.bam released s3://encode-public/2017/10/06/33e601a7-c182-422f-8817-b88b560e7fa1/ENCFF480LRG.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF038PZI bam bam alignments ce11 ENCSR433UJZ Control ChIP-seq /worm-donors/ENCDO000FMG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173019/'], '@type': ['Target', 'Item'], 'name': 'madf-2-celegans', 'label': 'madf-2', '@id': '/targets/madf-2-celegans/', 'title': 'madf-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e3bb1cc1-c472-4b4a-9d9e-f8946ff479df', 'status': 'released'} ce11 I 11269689 11305922 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF337NNX/ 1679052887 Kevin White, UChicago cea96970f0c75747e6b46d08643bb17b https://www.encodeproject.org/files/ENCFF038PZI/@@download/ENCFF038PZI.bam released s3://encode-public/2017/10/06/8a9ff4fb-345c-4b78-abd4-c83d75bb3189/ENCFF038PZI.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF911UXF bigWig bigWig read-depth normalized signal ce10 ENCSR433UJZ Control ChIP-seq /worm-donors/ENCDO000FMG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173019/'], '@type': ['Target', 'Item'], 'name': 'madf-2-celegans', 'label': 'madf-2', '@id': '/targets/madf-2-celegans/', 'title': 'madf-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e3bb1cc1-c472-4b4a-9d9e-f8946ff479df', 'status': 'released'} ce11 I 11269689 11305922 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF480LRG/ 9915917 Kevin White, UChicago fb59a6539a0a51e148873f7c0b20b976 https://www.encodeproject.org/files/ENCFF911UXF/@@download/ENCFF911UXF.bigWig released s3://encode-public/2017/10/09/6dcbdca8-1ba0-4006-99da-3e4231f1628a/ENCFF911UXF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF635NJV bigWig bigWig signal of unique reads ce10 ENCSR433UJZ Control ChIP-seq /worm-donors/ENCDO000FMG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173019/'], '@type': ['Target', 'Item'], 'name': 'madf-2-celegans', 'label': 'madf-2', '@id': '/targets/madf-2-celegans/', 'title': 'madf-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e3bb1cc1-c472-4b4a-9d9e-f8946ff479df', 'status': 'released'} ce11 I 11269689 11305922 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF480LRG/ 9963336 Kevin White, UChicago e595f5e3c11f5edac18e379545bb9566 https://www.encodeproject.org/files/ENCFF635NJV/@@download/ENCFF635NJV.bigWig released s3://encode-public/2017/10/09/5a3a4175-a8da-40cd-a5dd-9b7d7b239bcf/ENCFF635NJV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF221VFZ bigWig bigWig signal of unique reads ce11 ENCSR433UJZ Control ChIP-seq /worm-donors/ENCDO000FMG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 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characterization ENCFF769MAD bam bam alignments ce11 ENCSR830CMX Control ChIP-seq /worm-donors/ENCDO659PPF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565014/'], '@type': ['Target', 'Item'], 'name': 'attf-5-celegans', 'label': 'attf-5', '@id': '/targets/attf-5-celegans/', 'title': 'attf-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4788ac30-27bc-48b2-815c-ae1264f10cd0', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3 1_1, 3_1 50 /files/ENCFF584TXZ/, /files/ENCFF380VQQ/, /files/ENCFF586MOL/ 2103466990 Kevin White, UChicago 7117ce39e5dd098956c6f89ad684a074 https://www.encodeproject.org/files/ENCFF769MAD/@@download/ENCFF769MAD.bam released s3://encode-public/2018/02/27/1412172e-9af6-417a-9523-6aca21e0f587/ENCFF769MAD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF380VQQ fastq fastq reads ENCSR830CMX Control ChIP-seq /worm-donors/ENCDO659PPF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565014/'], '@type': ['Target', 'Item'], 'name': 'attf-5-celegans', 'label': 'attf-5', '@id': '/targets/attf-5-celegans/', 'title': 'attf-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4788ac30-27bc-48b2-815c-ae1264f10cd0', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3 3_1 50 single-ended 644948362 Kevin White, UChicago 1709ca0ea3690b5766f32b28e05b37bd https://www.encodeproject.org/files/ENCFF380VQQ/@@download/ENCFF380VQQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/4537c605-daae-4d15-8915-c799c26b5d75/ENCFF380VQQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF584TXZ fastq fastq reads ENCSR830CMX Control ChIP-seq /worm-donors/ENCDO659PPF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565014/'], '@type': ['Target', 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'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565014/'], '@type': ['Target', 'Item'], 'name': 'attf-5-celegans', 'label': 'attf-5', '@id': '/targets/attf-5-celegans/', 'title': 'attf-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4788ac30-27bc-48b2-815c-ae1264f10cd0', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3 1_1, 3_1 /files/ENCFF769MAD/ 10003276 Kevin White, UChicago 4bc91973577099bf856b486d2ece7644 https://www.encodeproject.org/files/ENCFF119EZN/@@download/ENCFF119EZN.bigWig released s3://encode-public/2018/03/01/35ed8055-3e5e-4f5f-a31a-2179ce8bcc7c/ENCFF119EZN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF247CSO bigWig bigWig signal of unique reads ce11 ENCSR830CMX Control ChIP-seq /worm-donors/ENCDO659PPF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565014/'], '@type': ['Target', 'Item'], 'name': 'attf-5-celegans', 'label': 'attf-5', '@id': '/targets/attf-5-celegans/', 'title': 'attf-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4788ac30-27bc-48b2-815c-ae1264f10cd0', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3 1_1, 3_1 /files/ENCFF769MAD/ 9940603 Kevin White, UChicago 1174227214ba51bd96573d16252480e5 https://www.encodeproject.org/files/ENCFF247CSO/@@download/ENCFF247CSO.bigWig released s3://encode-public/2018/03/01/27ac9f30-8afd-4a46-8a95-929b829f4720/ENCFF247CSO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF803MRK fastq fastq reads ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 215021915 Michael Snyder, Stanford 62fa7040d18e45aa3fa19656cd533a38 https://www.encodeproject.org/files/ENCFF803MRK/@@download/ENCFF803MRK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8306c6a8-abc3-4df3-8afd-bd2a7512c0fa/ENCFF803MRK.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF210BDW fastq fastq reads ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 189154112 Michael Snyder, Stanford 1eeb054b7deaaaf16a07356d48e7814e https://www.encodeproject.org/files/ENCFF210BDW/@@download/ENCFF210BDW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/44a73863-9858-452c-b61f-f21e4cf734a7/ENCFF210BDW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF560BJS bam bam alignments ce10 ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF803MRK/, /files/ENCFF210BDW/, /files/ENCFF987UMF/ 532466261 Kevin White, UChicago 043800d6d8590645cf70c6d02ccbfbaa https://www.encodeproject.org/files/ENCFF560BJS/@@download/ENCFF560BJS.bam released s3://encode-public/2016/10/18/9abc05c7-bb96-49b1-97e0-4c75f2785a21/ENCFF560BJS.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF893VGX bam bam alignments ce11 ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF803MRK/, /files/ENCFF210BDW/, /files/ENCFF586MOL/ 533060315 Kevin White, UChicago fde1f820b986cd39ce0758cfe4e9eaf3 https://www.encodeproject.org/files/ENCFF893VGX/@@download/ENCFF893VGX.bam released s3://encode-public/2016/10/19/4be298fa-fac7-4192-9977-9e193f9e7079/ENCFF893VGX.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF131LRJ bigWig bigWig signal of unique reads ce10 ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF560BJS/ 10005112 Kevin White, UChicago 7905babc23dc345da47df5d60249725c https://www.encodeproject.org/files/ENCFF131LRJ/@@download/ENCFF131LRJ.bigWig released s3://encode-public/2016/10/20/dd23dd59-9627-4bb5-8888-b571f96ee6d8/ENCFF131LRJ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF649GLY bigWig bigWig read-depth normalized signal ce10 ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF560BJS/ 10045095 Kevin White, UChicago 377753f260b673aaf39194c99679d252 https://www.encodeproject.org/files/ENCFF649GLY/@@download/ENCFF649GLY.bigWig released s3://encode-public/2016/10/20/f8617d89-10c8-4141-a1f6-1de902b71361/ENCFF649GLY.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF759GKN bigWig bigWig read-depth normalized signal ce11 ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF893VGX/ 10040716 Kevin White, UChicago b86e8bda06c730a6d86e15535f8528ae https://www.encodeproject.org/files/ENCFF759GKN/@@download/ENCFF759GKN.bigWig released s3://encode-public/2016/10/21/147e58a7-5aeb-4995-bc4b-25f29e4a392b/ENCFF759GKN.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF641NAX bigWig bigWig signal of unique reads ce11 ENCSR837ZAW Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF893VGX/ 10000663 Kevin White, UChicago 179fab7b8e3bf77fbec97b921cc89ff8 https://www.encodeproject.org/files/ENCFF641NAX/@@download/ENCFF641NAX.bigWig released s3://encode-public/2016/10/21/21c1f599-2bd3-42d3-a1ea-4ef346da6ced/ENCFF641NAX.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF196IPB fastq fastq reads ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 1452161424 Xiang-Dong Fu, UCSD 8e48ce8a7279a1f42c2b5d14cc37a30c SRA:SRR14104208 https://www.encodeproject.org/files/ENCFF196IPB/@@download/ENCFF196IPB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/e07ae8eb-5827-4b7a-a926-de40811ec88f/ENCFF196IPB.fastq.gz low read length ENCFF377ZTC fastq fastq reads ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1384470254 Xiang-Dong Fu, UCSD 00f8319a60dcb02491120876151f4bc8 SRA:SRR14104209 https://www.encodeproject.org/files/ENCFF377ZTC/@@download/ENCFF377ZTC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/2605ff7f-72c8-426c-b544-c45454f016c9/ENCFF377ZTC.fastq.gz low read length ENCFF409GXK bam bam alignments hg19 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF377ZTC/ 1447631294 ENCODE Processing Pipeline 4e497d7e72a44ae09d08967e00f67da4 https://www.encodeproject.org/files/ENCFF409GXK/@@download/ENCFF409GXK.bam released s3://encode-public/2015/11/12/2bb658a4-8a4a-4fe6-8825-66b674b77d4c/ENCFF409GXK.bam ENCODE3 hg19 archived low read length ENCFF323AAG bam bam alignments hg19 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF196IPB/ 1564569029 ENCODE Processing Pipeline b305a2312b4c794cee24c5dccc02e7b4 https://www.encodeproject.org/files/ENCFF323AAG/@@download/ENCFF323AAG.bam released s3://encode-public/2015/11/12/51abeda5-a264-450f-93f8-762204a41d1f/ENCFF323AAG.bam ENCODE3 hg19 archived low read length ENCFF174VYS bam bam unfiltered alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF196IPB/ 2061056339 ENCODE Processing Pipeline b66d1a7deefcc268a22a02c127320dad https://www.encodeproject.org/files/ENCFF174VYS/@@download/ENCFF174VYS.bam released s3://encode-public/2016/05/06/5b8b1694-90d7-4e30-91db-b7f790541804/ENCFF174VYS.bam ENCODE3 GRCh38 archived low read length ENCFF206EPF bam bam unfiltered alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF377ZTC/ 1941917877 ENCODE Processing Pipeline 2a05bb832beec60424fc64cdf72b2a9b https://www.encodeproject.org/files/ENCFF206EPF/@@download/ENCFF206EPF.bam released s3://encode-public/2016/05/06/51ebf635-b04d-4c15-ac83-7ffb59f9167e/ENCFF206EPF.bam ENCODE3 GRCh38 archived low read length ENCFF707OHH bam bam alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF196IPB/ 1563384625 ENCODE Processing Pipeline 5e3526916a88593df94eeffa2b2b13d0 https://www.encodeproject.org/files/ENCFF707OHH/@@download/ENCFF707OHH.bam released s3://encode-public/2016/05/06/73a6b5d6-4bdf-43e0-b2fc-6da94db60c44/ENCFF707OHH.bam ENCODE3 GRCh38 archived low read length ENCFF058TVV bam bam alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF377ZTC/ 1446524929 ENCODE Processing Pipeline 8ddfbbb14b86a821af02b7aeeb4a1577 https://www.encodeproject.org/files/ENCFF058TVV/@@download/ENCFF058TVV.bam released s3://encode-public/2016/05/06/48946842-b263-44f6-8827-f76dd32b83ab/ENCFF058TVV.bam ENCODE3 GRCh38 archived low read length ENCFF439KAE bam bam unfiltered alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF196IPB/, /files/ENCFF110MCL/ 2032984118 ENCODE Processing Pipeline d79fc09018f32dc1604f4d189d5aedaf https://www.encodeproject.org/files/ENCFF439KAE/@@download/ENCFF439KAE.bam released s3://encode-public/2020/10/27/687961d2-9666-4e3c-a9be-89e2c485f472/ENCFF439KAE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF304JHO bam bam alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF377ZTC/, /files/ENCFF110MCL/ 1491738865 ENCODE Processing Pipeline 308af1a066416156ad9ce1c8b3a662cd https://www.encodeproject.org/files/ENCFF304JHO/@@download/ENCFF304JHO.bam released s3://encode-public/2020/10/27/00c86f68-3001-4154-82ca-121eb292585f/ENCFF304JHO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF715NVC bam bam unfiltered alignments hg19 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF196IPB/ 2052925809 ENCODE Processing Pipeline a959e0bfe2cda3f001161ba8afbc8ea5 https://www.encodeproject.org/files/ENCFF715NVC/@@download/ENCFF715NVC.bam released s3://encode-public/2018/01/12/d0971a54-b448-4116-b2a4-d75a91593aab/ENCFF715NVC.bam ENCODE3 hg19 archived low read length ENCFF801JNT bam bam unfiltered alignments hg19 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF377ZTC/ 1934824532 ENCODE Processing Pipeline db11346b5d95651a967a65b17a251873 https://www.encodeproject.org/files/ENCFF801JNT/@@download/ENCFF801JNT.bam released s3://encode-public/2018/01/12/c25c51a6-2ae7-4655-b205-57eb941a7493/ENCFF801JNT.bam ENCODE3 hg19 archived low read length ENCFF081HFQ bam bam unfiltered alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF377ZTC/, /files/ENCFF110MCL/ 1915777448 ENCODE Processing Pipeline 8af0ceb92ad1ea689313779fad4d8ec9 https://www.encodeproject.org/files/ENCFF081HFQ/@@download/ENCFF081HFQ.bam released s3://encode-public/2020/10/27/cebf0c86-52b1-4ca6-ad7f-98dc7b641fe7/ENCFF081HFQ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF824ESZ bam bam alignments GRCh38 ENCSR487JIM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF196IPB/, /files/ENCFF110MCL/ 1604529472 ENCODE Processing Pipeline e6cf2d870ef3988689dc052404575c26 https://www.encodeproject.org/files/ENCFF824ESZ/@@download/ENCFF824ESZ.bam released s3://encode-public/2020/10/27/327aa153-e21c-4fc0-bf4f-feccf746783d/ENCFF824ESZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF676FAV bam bam unfiltered alignments hg19 ENCSR264VDP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF993VKM/, /files/ENCFF807MUK/ 2306806115 ENCODE Processing Pipeline 02f6726177773de5807b6c6401dd53c1 https://www.encodeproject.org/files/ENCFF676FAV/@@download/ENCFF676FAV.bam released s3://encode-public/2018/02/20/08c02e0f-5574-4feb-a715-598b1f82b1b5/ENCFF676FAV.bam ENCODE3 hg19 archived ENCFF993VKM fastq fastq reads ENCSR264VDP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 single-ended 2157374307 Richard Myers, HAIB 0c2b6bf77e3ab428830fbfaff4cd2734 SRA:SRR5331492 https://www.encodeproject.org/files/ENCFF993VKM/@@download/ENCFF993VKM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/17/1f2b9484-de2b-4a91-ba6a-af48bffa71e9/ENCFF993VKM.fastq.gz ENCFF847YDJ bam bam alignments hg19 ENCSR264VDP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF993VKM/, /files/ENCFF807MUK/ 1776680124 ENCODE Processing Pipeline 9fabdb3e1ebb9bfb398bb5993ca5970c https://www.encodeproject.org/files/ENCFF847YDJ/@@download/ENCFF847YDJ.bam released s3://encode-public/2015/11/17/34d2463c-9532-4854-9d6c-d0f6f90341c3/ENCFF847YDJ.bam ENCODE3 hg19 archived ENCFF057EMC bam bam unfiltered alignments GRCh38 ENCSR264VDP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF993VKM/, /files/ENCFF643CGH/ 2314015320 ENCODE Processing Pipeline f00e49a7e1e0a4c4071d7c04f970f6e7 https://www.encodeproject.org/files/ENCFF057EMC/@@download/ENCFF057EMC.bam released s3://encode-public/2016/05/06/37d3da0b-4521-43a4-a1a7-593a25ff3a8d/ENCFF057EMC.bam ENCODE3 GRCh38 archived ENCFF092PMQ bam bam alignments GRCh38 ENCSR264VDP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF993VKM/, /files/ENCFF643CGH/ 1776183289 ENCODE Processing Pipeline 18554e7062adb94f6ab67ef3756e4cc6 https://www.encodeproject.org/files/ENCFF092PMQ/@@download/ENCFF092PMQ.bam released s3://encode-public/2016/05/06/afb19453-a941-4b20-afd2-3bf99f88f22f/ENCFF092PMQ.bam ENCODE3 GRCh38 archived ENCFF110TDS bam bam unfiltered alignments GRCh38 ENCSR264VDP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF993VKM/ 2291664436 ENCODE Processing Pipeline 82dddf85059895ca7eca80aa0505f2ca https://www.encodeproject.org/files/ENCFF110TDS/@@download/ENCFF110TDS.bam released s3://encode-public/2020/06/25/8d1e6844-004c-445f-8011-86c7f7fbca74/ENCFF110TDS.bam ENCODE4 GRCh38 released ENCFF531ROB bam bam alignments GRCh38 ENCSR264VDP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF993VKM/ 1862467041 ENCODE Processing Pipeline a183e470bd7c1fa2cea7b42fc11bc83d https://www.encodeproject.org/files/ENCFF531ROB/@@download/ENCFF531ROB.bam released s3://encode-public/2020/06/25/30909170-db0e-4c4d-8824-b9cdbdb71c6e/ENCFF531ROB.bam ENCODE4 GRCh38 released ENCFF476JTK fastq fastq reads ENCSR742BIV Control ChIP-seq /worm-donors/ENCDO528IIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184388/'], '@type': ['Target', 'Item'], 'name': 'sdz-12-celegans', 'label': 'sdz-12', '@id': '/targets/sdz-12-celegans/', 'title': 'sdz-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0fd5896-2c07-4281-ac40-fc291bb47141', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 567344134 Kevin White, UChicago 3c134743b217b4cc3a990516f89135a1 https://www.encodeproject.org/files/ENCFF476JTK/@@download/ENCFF476JTK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/585b805e-6e57-473d-904e-2924cd4edc9a/ENCFF476JTK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF318CMZ bam bam alignments ce11 ENCSR742BIV Control ChIP-seq /worm-donors/ENCDO528IIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184388/'], '@type': ['Target', 'Item'], 'name': 'sdz-12-celegans', 'label': 'sdz-12', '@id': '/targets/sdz-12-celegans/', 'title': 'sdz-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0fd5896-2c07-4281-ac40-fc291bb47141', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF476JTK/, /files/ENCFF586MOL/ 733514874 Kevin White, UChicago d2e1a593295ee00dc07375e7f763b695 https://www.encodeproject.org/files/ENCFF318CMZ/@@download/ENCFF318CMZ.bam released s3://encode-public/2018/02/28/74be2a68-aaa4-4975-963e-a5153dc6fb94/ENCFF318CMZ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF608KTF bigWig bigWig read-depth normalized signal ce11 ENCSR742BIV Control ChIP-seq /worm-donors/ENCDO528IIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184388/'], '@type': ['Target', 'Item'], 'name': 'sdz-12-celegans', 'label': 'sdz-12', '@id': '/targets/sdz-12-celegans/', 'title': 'sdz-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0fd5896-2c07-4281-ac40-fc291bb47141', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF318CMZ/ 9928592 Kevin White, UChicago 3107758bb2a85d67aaccaf3238dfac03 https://www.encodeproject.org/files/ENCFF608KTF/@@download/ENCFF608KTF.bigWig released s3://encode-public/2018/03/01/534734a9-7d6f-44d2-b947-7a5449b71d85/ENCFF608KTF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF884PQR bigWig bigWig signal of unique reads ce11 ENCSR742BIV Control ChIP-seq /worm-donors/ENCDO528IIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184388/'], '@type': ['Target', 'Item'], 'name': 'sdz-12-celegans', 'label': 'sdz-12', '@id': '/targets/sdz-12-celegans/', 'title': 'sdz-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0fd5896-2c07-4281-ac40-fc291bb47141', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF318CMZ/ 9926434 Kevin White, UChicago 41d8de0259dd6312ee0c1a0168ce7edc https://www.encodeproject.org/files/ENCFF884PQR/@@download/ENCFF884PQR.bigWig released s3://encode-public/2018/03/01/f866c291-9692-46bf-bba4-9603ea1e54db/ENCFF884PQR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF216TZP fastq fastq reads ENCSR990KPW Control ChIP-seq /worm-donors/ENCDO445JDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184597/'], '@type': ['Target', 'Item'], 'name': 'nhr-27-celegans', 'label': 'nhr-27', '@id': '/targets/nhr-27-celegans/', 'title': 'nhr-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a75028c9-4ec6-45dc-b00d-d2c4c980de8b', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 634361556 Kevin White, UChicago 5bdacadfac80e10b8ebc47452d5346df https://www.encodeproject.org/files/ENCFF216TZP/@@download/ENCFF216TZP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/bd6c1bc2-e228-4d64-ae33-b5fc709f4676/ENCFF216TZP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF675PQO bigWig bigWig read-depth normalized signal ce11 ENCSR990KPW Control ChIP-seq /worm-donors/ENCDO445JDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184597/'], '@type': ['Target', 'Item'], 'name': 'nhr-27-celegans', 'label': 'nhr-27', '@id': '/targets/nhr-27-celegans/', 'title': 'nhr-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a75028c9-4ec6-45dc-b00d-d2c4c980de8b', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF715CUU/ 9919111 Kevin White, UChicago 911651e599e44d6a5caf6a9d89ddb24a https://www.encodeproject.org/files/ENCFF675PQO/@@download/ENCFF675PQO.bigWig released s3://encode-public/2018/03/01/7eb6cfc8-c047-48ea-84bc-306143da9aa0/ENCFF675PQO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF069ZTH bigWig bigWig signal of unique reads ce11 ENCSR990KPW Control ChIP-seq /worm-donors/ENCDO445JDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184597/'], '@type': ['Target', 'Item'], 'name': 'nhr-27-celegans', 'label': 'nhr-27', '@id': '/targets/nhr-27-celegans/', 'title': 'nhr-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a75028c9-4ec6-45dc-b00d-d2c4c980de8b', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF715CUU/ 9919217 Kevin White, UChicago 9ae8ca1645daefc065f7bd8729705b5c https://www.encodeproject.org/files/ENCFF069ZTH/@@download/ENCFF069ZTH.bigWig released s3://encode-public/2018/03/01/18ca50de-5c9e-481d-af4a-f352f898f8fa/ENCFF069ZTH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF715CUU bam bam alignments ce11 ENCSR990KPW Control ChIP-seq /worm-donors/ENCDO445JDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184597/'], '@type': ['Target', 'Item'], 'name': 'nhr-27-celegans', 'label': 'nhr-27', '@id': '/targets/nhr-27-celegans/', 'title': 'nhr-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a75028c9-4ec6-45dc-b00d-d2c4c980de8b', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF216TZP/, /files/ENCFF586MOL/ 825166864 Kevin White, UChicago 2dd37272985c1c778bc25dae7806e970 https://www.encodeproject.org/files/ENCFF715CUU/@@download/ENCFF715CUU.bam released s3://encode-public/2018/02/28/04c98444-2ef9-44f2-a70a-976c4c8d9efb/ENCFF715CUU.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF644IGO fastq fastq reads ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF023XZI/ 3870156134 Michael Snyder, Stanford 1c7486637db13e836355385aa5821fd0 SRA:SRR5111520 https://www.encodeproject.org/files/ENCFF644IGO/@@download/ENCFF644IGO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/18/5c122d31-4141-480c-be3b-79c367559b93/ENCFF644IGO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF023XZI fastq fastq reads ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF644IGO/ 3654883521 Michael Snyder, Stanford adafb391e988e47b3eef3586782520ea SRA:SRR5111520 https://www.encodeproject.org/files/ENCFF023XZI/@@download/ENCFF023XZI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/18/75db328a-1979-4305-9feb-8f667c191a8d/ENCFF023XZI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF862EKZ fastq fastq reads ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF005OJL/ 3983096744 Michael Snyder, Stanford 2b9901994550cbfaff6d4bc289bcbe97 SRA:SRR5111521 https://www.encodeproject.org/files/ENCFF862EKZ/@@download/ENCFF862EKZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/18/4a68b307-2a5e-4e4f-973e-7371849cf268/ENCFF862EKZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF005OJL fastq fastq reads ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF862EKZ/ 3883346657 Michael Snyder, Stanford 01117785d3103b147f5df032f4e97822 SRA:SRR5111521 https://www.encodeproject.org/files/ENCFF005OJL/@@download/ENCFF005OJL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/18/3d7d9420-6aa7-42e0-a085-7f0682966ff7/ENCFF005OJL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF565UUC bam bam unfiltered alignments hg19 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF862EKZ/, /files/ENCFF807MUK/, /files/ENCFF005OJL/ 7213243217 ENCODE Processing Pipeline 696df07e0009398c2fb8bc7bb62a2e1f https://www.encodeproject.org/files/ENCFF565UUC/@@download/ENCFF565UUC.bam released s3://encode-public/2016/10/27/3a8533de-bbda-4123-9a66-5fb901c3c661/ENCFF565UUC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF846BQW bam bam unfiltered alignments hg19 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF644IGO/, /files/ENCFF023XZI/ 7062242441 ENCODE Processing Pipeline 3408d56f8d20597e606000c29717c0f4 https://www.encodeproject.org/files/ENCFF846BQW/@@download/ENCFF846BQW.bam released s3://encode-public/2016/10/27/c0c0c979-f563-4870-a50d-09908989fbf0/ENCFF846BQW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF040GAR bam bam alignments hg19 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF644IGO/, /files/ENCFF023XZI/ 5267250862 ENCODE Processing Pipeline 8c60f3c4203f77e12db0f3e29cefe039 https://www.encodeproject.org/files/ENCFF040GAR/@@download/ENCFF040GAR.bam released s3://encode-public/2016/10/27/8e5d3cb6-ddca-4995-88dd-0bafbb5414ca/ENCFF040GAR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF760DHW bam bam alignments hg19 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF862EKZ/, /files/ENCFF807MUK/, /files/ENCFF005OJL/ 5293033232 ENCODE Processing Pipeline fce2949b4e4d36faa128534cdfb27df3 https://www.encodeproject.org/files/ENCFF760DHW/@@download/ENCFF760DHW.bam released s3://encode-public/2016/10/27/26abc209-b261-48b8-916d-5b6aced2c6ba/ENCFF760DHW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF495CIW bam bam unfiltered alignments GRCh38 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF644IGO/, /files/ENCFF023XZI/, /files/ENCFF643CGH/ 7062872836 ENCODE Processing Pipeline 0f1ba28906473720a8b8fe82fb47b77e https://www.encodeproject.org/files/ENCFF495CIW/@@download/ENCFF495CIW.bam released s3://encode-public/2016/10/27/a15e070c-3b5e-4c4c-9d3a-16ab5b127302/ENCFF495CIW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF008GCZ bam bam unfiltered alignments GRCh38 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF862EKZ/, /files/ENCFF643CGH/, /files/ENCFF005OJL/ 7216762221 ENCODE Processing Pipeline 415de853a4f8aee3ecacfbc340616c17 https://www.encodeproject.org/files/ENCFF008GCZ/@@download/ENCFF008GCZ.bam released s3://encode-public/2016/10/27/88bd62f4-c006-407d-bd2c-e4d151dd0ec5/ENCFF008GCZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF290DLX bam bam alignments GRCh38 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF862EKZ/, /files/ENCFF643CGH/, /files/ENCFF005OJL/ 5296357243 ENCODE Processing Pipeline b670de10240dd2e0584435b22defe86f https://www.encodeproject.org/files/ENCFF290DLX/@@download/ENCFF290DLX.bam released s3://encode-public/2016/10/27/8a334007-9942-453c-bea2-588903138377/ENCFF290DLX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF488RJA bam bam alignments GRCh38 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF644IGO/, /files/ENCFF023XZI/, /files/ENCFF643CGH/ 5270583239 ENCODE Processing Pipeline 28f6baeed46b121b875460ea4a4ecc27 https://www.encodeproject.org/files/ENCFF488RJA/@@download/ENCFF488RJA.bam released s3://encode-public/2016/10/27/23cc542a-9f4e-405e-b675-f2f66afe58cb/ENCFF488RJA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF636ORI bam bam alignments GRCh38 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF005OJL/, /files/ENCFF862EKZ/ 5186870953 ENCODE Processing Pipeline 58de641eeb671c97c69b83df1832f218 https://www.encodeproject.org/files/ENCFF636ORI/@@download/ENCFF636ORI.bam released s3://encode-public/2020/06/02/60cb2116-d751-4f3d-979e-e84f6f4525a7/ENCFF636ORI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF278TAS bam bam unfiltered alignments GRCh38 ENCSR386FAB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo 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read-depth normalized signal dm3 ENCSR089QIZ Control ChIP-seq /fly-donors/ENCDO372UXB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31682/'], '@type': ['Target', 'Item'], 'name': 'CG12155-dmelanogaster', 'label': 'CG12155', '@id': '/targets/CG12155-dmelanogaster/', 'title': 'CG12155 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06f1d684-a984-4229-bd68-3cf5698e4b92', 'status': 'released'} dm3 X 7619045 7639432 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF958HPY/ 15363068 Kevin White, UChicago bf251c758c8273ad3ac2f5c9bb418260 https://www.encodeproject.org/files/ENCFF379SMT/@@download/ENCFF379SMT.bigWig released s3://encode-public/2016/04/11/fb31069e-3c73-41d5-86d0-7a2faaa01c7f/ENCFF379SMT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF447CQS bigWig bigWig signal of unique reads dm3 ENCSR089QIZ Control ChIP-seq /fly-donors/ENCDO372UXB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31682/'], '@type': ['Target', 'Item'], 'name': 'CG12155-dmelanogaster', 'label': 'CG12155', '@id': '/targets/CG12155-dmelanogaster/', 'title': 'CG12155 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06f1d684-a984-4229-bd68-3cf5698e4b92', 'status': 'released'} dm3 X 7619045 7639432 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF958HPY/ 15313903 Kevin White, UChicago 859607c4727194e9dbc22827ab568349 https://www.encodeproject.org/files/ENCFF447CQS/@@download/ENCFF447CQS.bigWig released s3://encode-public/2016/04/11/fcf2cb6e-a271-4d72-a5cd-d574effaadc2/ENCFF447CQS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF552YEC bam bam alignments dm6 ENCSR089QIZ Control ChIP-seq /fly-donors/ENCDO372UXB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31682/'], '@type': ['Target', 'Item'], 'name': 'CG12155-dmelanogaster', 'label': 'CG12155', '@id': '/targets/CG12155-dmelanogaster/', 'title': 'CG12155 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06f1d684-a984-4229-bd68-3cf5698e4b92', 'status': 'released'} dm3 X 7619045 7639432 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF964IPO/ 727085410 Kevin White, UChicago 45697b59b74eb82f2c26092473be4adb https://www.encodeproject.org/files/ENCFF552YEC/@@download/ENCFF552YEC.bam released s3://encode-public/2016/04/20/cfaac163-f8ec-4ef8-a05c-028d0513c66b/ENCFF552YEC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF292LCJ bigWig bigWig read-depth normalized signal dm6 ENCSR089QIZ Control ChIP-seq /fly-donors/ENCDO372UXB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31682/'], '@type': ['Target', 'Item'], 'name': 'CG12155-dmelanogaster', 'label': 'CG12155', '@id': '/targets/CG12155-dmelanogaster/', 'title': 'CG12155 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06f1d684-a984-4229-bd68-3cf5698e4b92', 'status': 'released'} dm3 X 7619045 7639432 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF552YEC/ 17483892 Kevin White, UChicago aa34713ca1ec63f8181d38e4816476b7 https://www.encodeproject.org/files/ENCFF292LCJ/@@download/ENCFF292LCJ.bigWig released s3://encode-public/2016/06/21/8bc0b8fa-4a88-48c3-9e99-eaa86fe43668/ENCFF292LCJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF513UUS bigWig bigWig signal of unique reads dm6 ENCSR089QIZ Control ChIP-seq /fly-donors/ENCDO372UXB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31682/'], '@type': ['Target', 'Item'], 'name': 'CG12155-dmelanogaster', 'label': 'CG12155', '@id': '/targets/CG12155-dmelanogaster/', 'title': 'CG12155 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06f1d684-a984-4229-bd68-3cf5698e4b92', 'status': 'released'} dm3 X 7619045 7639432 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF552YEC/ 17419056 Kevin White, UChicago b5416f7393731733577142e19e3e13af https://www.encodeproject.org/files/ENCFF513UUS/@@download/ENCFF513UUS.bigWig released s3://encode-public/2016/06/21/7d0341ec-a9b5-41c4-824e-ffbeeb00b480/ENCFF513UUS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF691VJX fastq fastq reads ENCSR862ZBY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 single-ended 1323088172 Richard Myers, HAIB 0dba8ab963ce66741c8f0896bdf382ab SRA:SRR5112188 https://www.encodeproject.org/files/ENCFF691VJX/@@download/ENCFF691VJX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/05/a07e9089-7eb1-404f-bf51-2bf4fb3001c1/ENCFF691VJX.fastq.gz ENCFF263KEN bam bam unfiltered alignments mm10 ENCSR862ZBY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF691VJX/ 1423975469 ENCODE Processing Pipeline def2ee9cc6ba3a525e3477ecd8ad5ff9 https://www.encodeproject.org/files/ENCFF263KEN/@@download/ENCFF263KEN.bam released s3://encode-public/2016/05/20/739e4ac8-c25d-4664-a184-e3a0d77512d1/ENCFF263KEN.bam ENCODE3 mm10 archived ENCFF147QOO bam bam alignments mm10 ENCSR862ZBY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF691VJX/ 1076315704 ENCODE Processing Pipeline 7d65068607ee5bd493dcadbeadb5858c https://www.encodeproject.org/files/ENCFF147QOO/@@download/ENCFF147QOO.bam released s3://encode-public/2016/05/20/eecb9c12-e146-4821-bf64-4a13287435b8/ENCFF147QOO.bam ENCODE3 mm10 archived ENCFF742CNW bam bam unfiltered alignments mm10 ENCSR862ZBY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF691VJX/ 1411948861 ENCODE Processing Pipeline 2a83bba3881ceab00debf1ef3b78a768 https://www.encodeproject.org/files/ENCFF742CNW/@@download/ENCFF742CNW.bam released s3://encode-public/2020/10/07/5e5ee68a-8c09-4a23-ace6-dc8b7b28533e/ENCFF742CNW.bam ENCODE4 v1.5.1 mm10 released ENCFF130ZVO bam bam alignments mm10 ENCSR862ZBY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF691VJX/ 1114533202 ENCODE Processing Pipeline 9fcb1129623e49e3468d26207d1d97e2 https://www.encodeproject.org/files/ENCFF130ZVO/@@download/ENCFF130ZVO.bam released s3://encode-public/2020/10/07/d9a9f8a4-cdb0-4f3f-9176-3ce9be43ddf9/ENCFF130ZVO.bam ENCODE4 v1.5.1 mm10 released ENCFF404GTP fastq fastq reads ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 166074532 Michael Snyder, Stanford 3e1c321b606945ab477fad08e66df018 https://www.encodeproject.org/files/ENCFF404GTP/@@download/ENCFF404GTP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e562c4c9-e025-493e-bdce-b5332a332759/ENCFF404GTP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF932EBA fastq fastq reads ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 156165188 Michael Snyder, Stanford 70db0b9edea0f4547b4720899d2689e7 https://www.encodeproject.org/files/ENCFF932EBA/@@download/ENCFF932EBA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cff63178-0e1b-403c-bbb9-84e8d53225f7/ENCFF932EBA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF932EKY bam bam alignments ce10 ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF932EBA/, /files/ENCFF404GTP/, /files/ENCFF987UMF/ 427045744 Kevin White, UChicago 0336bf65ca001d4efb2812a3f67fc9f8 https://www.encodeproject.org/files/ENCFF932EKY/@@download/ENCFF932EKY.bam released s3://encode-public/2016/10/18/b9319e8f-aede-47a7-a464-09a48e19e5f5/ENCFF932EKY.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF678ZSR bam bam alignments ce11 ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF932EBA/, /files/ENCFF404GTP/, /files/ENCFF586MOL/ 427581361 Kevin White, UChicago b5204de3e80063ff49c3f21f4962acb1 https://www.encodeproject.org/files/ENCFF678ZSR/@@download/ENCFF678ZSR.bam released s3://encode-public/2016/10/18/c29e5d7b-6116-469b-9463-a1c9829b41f6/ENCFF678ZSR.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF418UPD bigWig bigWig signal of unique reads ce10 ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF932EKY/ 10056158 Kevin White, UChicago 553911853e73b5e680d9c746f2160b4b https://www.encodeproject.org/files/ENCFF418UPD/@@download/ENCFF418UPD.bigWig released s3://encode-public/2016/10/20/a2a011d9-b361-4828-8963-098ee0c794c2/ENCFF418UPD.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF830EVF bigWig bigWig read-depth normalized signal ce10 ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF932EKY/ 10022112 Kevin White, UChicago 26ea245112f8690195ed3e58cfc6af58 https://www.encodeproject.org/files/ENCFF830EVF/@@download/ENCFF830EVF.bigWig released s3://encode-public/2016/10/20/8d4e7bd4-00a2-4bfa-b95b-823903ec03a4/ENCFF830EVF.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF085NJO bigWig bigWig read-depth normalized signal ce11 ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF678ZSR/ 10017316 Kevin White, UChicago e0e37e4023167c4c9380f8552aa403bd https://www.encodeproject.org/files/ENCFF085NJO/@@download/ENCFF085NJO.bigWig released s3://encode-public/2016/10/20/7c678bce-e8ad-43fe-a809-b9b09d5efaa7/ENCFF085NJO.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF042ITX bigWig bigWig signal of unique reads ce11 ENCSR378JHP Control ChIP-seq /worm-donors/ENCDO864HIT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176137/'], '@type': ['Target', 'Item'], 'name': 'pros-1-celegans', 'label': 'pros-1', '@id': '/targets/pros-1-celegans/', 'title': 'pros-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b37176dd-23ee-45a0-9672-1b9cb5274902', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF678ZSR/ 10051347 Kevin White, UChicago 3e4215a43e341851e3388d04895e2e82 https://www.encodeproject.org/files/ENCFF042ITX/@@download/ENCFF042ITX.bigWig released s3://encode-public/2016/10/20/cde5fafc-0117-4ec8-9b81-692361f4d043/ENCFF042ITX.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF324NRH bam bam unfiltered alignments hg19 ENCSR136WQZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF598SBH/, /files/ENCFF807MUK/ 3062275380 ENCODE Processing Pipeline cdcd981c5811f40a96837b6fb22f35e9 https://www.encodeproject.org/files/ENCFF324NRH/@@download/ENCFF324NRH.bam released s3://encode-public/2018/02/21/394dea8c-a31e-4cec-aba1-86d018a6cb1b/ENCFF324NRH.bam ENCODE3 hg19 archived ENCFF598SBH fastq fastq reads ENCSR136WQZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 single-ended 2855347833 Richard Myers, HAIB 6a86d2bbe52bf83efffa2bd781a2042f https://www.encodeproject.org/files/ENCFF598SBH/@@download/ENCFF598SBH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/a761517c-96ab-4e1a-93bf-d011a6213be9/ENCFF598SBH.fastq.gz ENCFF313NWV bam bam alignments hg19 ENCSR136WQZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF598SBH/, /files/ENCFF807MUK/ 2330227771 ENCODE Processing Pipeline f5f590b54dfc7a3eaeda3b4b22a86062 https://www.encodeproject.org/files/ENCFF313NWV/@@download/ENCFF313NWV.bam released s3://encode-public/2015/11/17/54248e9f-de1b-4b88-aa25-42cded045f09/ENCFF313NWV.bam ENCODE3 hg19 archived ENCFF933WXM bam bam unfiltered alignments GRCh38 ENCSR136WQZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF598SBH/, /files/ENCFF643CGH/ 3070590610 ENCODE Processing Pipeline dbd2c8009c80535e7c8e0587dc08573b https://www.encodeproject.org/files/ENCFF933WXM/@@download/ENCFF933WXM.bam released s3://encode-public/2016/05/06/845dfde2-463c-4b03-9ca4-999669c7e161/ENCFF933WXM.bam ENCODE3 GRCh38 archived ENCFF409OXD bam bam alignments GRCh38 ENCSR136WQZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF598SBH/, /files/ENCFF643CGH/ 2337730122 ENCODE Processing Pipeline d733f3d3ab862fc98840c1f4a385e889 https://www.encodeproject.org/files/ENCFF409OXD/@@download/ENCFF409OXD.bam released s3://encode-public/2016/05/06/18fa1508-33ae-4017-9603-047db20f8d5b/ENCFF409OXD.bam ENCODE3 GRCh38 archived ENCFF654VKA bam bam alignments GRCh38 ENCSR136WQZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF598SBH/ 2428034596 ENCODE Processing Pipeline 037071684dbbb9a4f40144a609833fbc https://www.encodeproject.org/files/ENCFF654VKA/@@download/ENCFF654VKA.bam released s3://encode-public/2020/11/05/d98e11ca-a16d-44a5-8372-42fc7d158c9d/ENCFF654VKA.bam ENCODE4 v1.6.1 GRCh38 released ENCFF458NAY bam bam unfiltered alignments GRCh38 ENCSR136WQZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF598SBH/ 3042993901 ENCODE Processing Pipeline 247d9c44e959862f1f1f4e001a0b4d45 https://www.encodeproject.org/files/ENCFF458NAY/@@download/ENCFF458NAY.bam released s3://encode-public/2020/11/05/0428aebd-c86d-4cdf-9607-4e3e1064a766/ENCFF458NAY.bam ENCODE4 v1.6.1 GRCh38 released ENCFF878QWB fastq fastq reads ENCSR826WZK Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF236CWV/ 2733534770 Michael Snyder, Stanford 3ae39bc591faf3df693f195163136170 https://www.encodeproject.org/files/ENCFF878QWB/@@download/ENCFF878QWB.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/07/e797fba8-8c81-43cb-8bd6-b83ace74af64/ENCFF878QWB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF236CWV fastq fastq reads ENCSR826WZK Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF878QWB/ 2819940661 Michael Snyder, Stanford b70dbbd70a9fbad00ba031b81c3fc05f https://www.encodeproject.org/files/ENCFF236CWV/@@download/ENCFF236CWV.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/07/3be1cf1b-e9fd-43ff-8fe5-675c0ff42ad5/ENCFF236CWV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF997AYB bam bam unfiltered alignments GRCh38 ENCSR826WZK Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF878QWB/, /files/ENCFF236CWV/, /files/ENCFF110MCL/ 4503263728 ENCODE Processing Pipeline 32023c4b13fad7c20ddc8e446ae9e999 https://www.encodeproject.org/files/ENCFF997AYB/@@download/ENCFF997AYB.bam released s3://encode-public/2021/10/22/e6848f92-fd27-4c46-a53a-288870922481/ENCFF997AYB.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF869OHA bam bam alignments GRCh38 ENCSR826WZK Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF878QWB/, /files/ENCFF236CWV/, /files/ENCFF110MCL/ 2631917343 ENCODE Processing Pipeline 23bed99aafc60cd23575a4e5324ee090 https://www.encodeproject.org/files/ENCFF869OHA/@@download/ENCFF869OHA.bam released s3://encode-public/2021/10/22/4b7604df-4d32-475c-91d8-a704c5b85460/ENCFF869OHA.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF614SYY fastq fastq reads ENCSR178PAG Control ChIP-seq /fly-donors/ENCDO991CKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31657/'], '@type': ['Target', 'Item'], 'name': 'CG4617-dmelanogaster', 'label': 'CG4617', '@id': '/targets/CG4617-dmelanogaster/', 'title': 'CG4617 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '07b86572-8579-4727-beb9-48944f9f5153', 'status': 'released'} dm3 X 6982491 7002188 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 702296769 Kevin White, UChicago cb541fe2a9e06ea565239b58957497be https://www.encodeproject.org/files/ENCFF614SYY/@@download/ENCFF614SYY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/f6ec5de8-87d4-49aa-b829-69d616f6e0f7/ENCFF614SYY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF372NKB bam bam alignments dm3 ENCSR178PAG Control ChIP-seq /fly-donors/ENCDO991CKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31657/'], '@type': ['Target', 'Item'], 'name': 'CG4617-dmelanogaster', 'label': 'CG4617', '@id': '/targets/CG4617-dmelanogaster/', 'title': 'CG4617 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '07b86572-8579-4727-beb9-48944f9f5153', 'status': 'released'} dm3 X 6982491 7002188 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF614SYY/ 855696417 Kevin White, UChicago 1549aa74b845583ba279581b33bce9ad https://www.encodeproject.org/files/ENCFF372NKB/@@download/ENCFF372NKB.bam released s3://encode-public/2016/04/10/7399c4a7-615e-4916-a97b-d17082d504a4/ENCFF372NKB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF482YKS bigWig bigWig read-depth normalized signal dm3 ENCSR178PAG Control ChIP-seq /fly-donors/ENCDO991CKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31657/'], '@type': ['Target', 'Item'], 'name': 'CG4617-dmelanogaster', 'label': 'CG4617', '@id': '/targets/CG4617-dmelanogaster/', 'title': 'CG4617 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '07b86572-8579-4727-beb9-48944f9f5153', 'status': 'released'} dm3 X 6982491 7002188 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF372NKB/ 15378886 Kevin White, UChicago 734c06f99f54aac4eec1b3a144292e39 https://www.encodeproject.org/files/ENCFF482YKS/@@download/ENCFF482YKS.bigWig released s3://encode-public/2016/04/11/9c781bea-ccbf-400e-ac55-1d064aab219b/ENCFF482YKS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF918BIS bigWig bigWig signal of unique reads dm3 ENCSR178PAG Control ChIP-seq /fly-donors/ENCDO991CKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31657/'], '@type': ['Target', 'Item'], 'name': 'CG4617-dmelanogaster', 'label': 'CG4617', '@id': '/targets/CG4617-dmelanogaster/', 'title': 'CG4617 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '07b86572-8579-4727-beb9-48944f9f5153', 'status': 'released'} dm3 X 6982491 7002188 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF372NKB/ 15345778 Kevin White, UChicago 65c30e7e7aad8eb04b4f60a96a218f01 https://www.encodeproject.org/files/ENCFF918BIS/@@download/ENCFF918BIS.bigWig released s3://encode-public/2016/04/11/180f7140-ea04-49b2-bcde-acceefd6fb48/ENCFF918BIS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF691CKE bam bam alignments dm6 ENCSR178PAG Control ChIP-seq /fly-donors/ENCDO991CKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31657/'], '@type': ['Target', 'Item'], 'name': 'CG4617-dmelanogaster', 'label': 'CG4617', '@id': '/targets/CG4617-dmelanogaster/', 'title': 'CG4617 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '07b86572-8579-4727-beb9-48944f9f5153', 'status': 'released'} dm3 X 6982491 7002188 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF614SYY/ 852816786 Kevin White, UChicago e029c02139b6c7d0c770f34c7d7eae55 https://www.encodeproject.org/files/ENCFF691CKE/@@download/ENCFF691CKE.bam released s3://encode-public/2016/04/20/ea089f95-835d-44ca-a510-0f703ff49307/ENCFF691CKE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF200RNG bigWig bigWig read-depth normalized signal dm6 ENCSR178PAG Control ChIP-seq /fly-donors/ENCDO991CKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31657/'], '@type': ['Target', 'Item'], 'name': 'CG4617-dmelanogaster', 'label': 'CG4617', '@id': '/targets/CG4617-dmelanogaster/', 'title': 'CG4617 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '07b86572-8579-4727-beb9-48944f9f5153', 'status': 'released'} dm3 X 6982491 7002188 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF691CKE/ 17497586 Kevin White, UChicago 0d20711d45d7771b4e8ad6e6778c70a2 https://www.encodeproject.org/files/ENCFF200RNG/@@download/ENCFF200RNG.bigWig released s3://encode-public/2016/06/20/aeef6025-a27a-470c-9f88-2630a5013add/ENCFF200RNG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF382YOD bigWig bigWig signal of unique reads dm6 ENCSR178PAG Control ChIP-seq /fly-donors/ENCDO991CKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31657/'], '@type': ['Target', 'Item'], 'name': 'CG4617-dmelanogaster', 'label': 'CG4617', '@id': '/targets/CG4617-dmelanogaster/', 'title': 'CG4617 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '07b86572-8579-4727-beb9-48944f9f5153', 'status': 'released'} dm3 X 6982491 7002188 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF691CKE/ 17451229 Kevin White, UChicago 9363f661f4d5586120175f31dc29b5e9 https://www.encodeproject.org/files/ENCFF382YOD/@@download/ENCFF382YOD.bigWig released s3://encode-public/2016/06/20/77e357e8-5862-4d3f-85b1-956bcbff8d2a/ENCFF382YOD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF189CVV bam bam alignments mm10-minimal ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF580JZM/ 2062262271 ENCODE Processing Pipeline 55b9c4d6de665f5a74c57acb02235e63 https://www.encodeproject.org/files/ENCFF189CVV/@@download/ENCFF189CVV.bam archived s3://encode-public/2015/06/24/e6589334-e02f-46e0-9d3a-545160d7eb8f/ENCFF189CVV.bam ENCFF366PSQ bam bam alignments mm10-minimal ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF037ZOC/, /files/ENCFF806TVZ/ 1923093134 ENCODE Processing Pipeline 04a2fdb83e8f87bab20f09df58306078 https://www.encodeproject.org/files/ENCFF366PSQ/@@download/ENCFF366PSQ.bam archived s3://encode-public/2015/06/24/bdc3cd7b-5e0b-4c38-b75f-eecabaa5fa2e/ENCFF366PSQ.bam ENCFF037ZOC fastq fastq reads ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2262295805 Bing Ren, UCSD 5a7a4fb560880845b32e2b8462269847 SRA:SRR3652506 https://www.encodeproject.org/files/ENCFF037ZOC/@@download/ENCFF037ZOC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/27bef4f5-6af0-4824-9a2f-1cae7c52f09d/ENCFF037ZOC.fastq.gz ENCFF580JZM fastq fastq reads ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2443951067 Bing Ren, UCSD 72a6a7198d868f40c4ed5254731b3269 SRA:SRR3652504 https://www.encodeproject.org/files/ENCFF580JZM/@@download/ENCFF580JZM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/cd1e8649-1b35-4071-a90f-bca08cd9c2fa/ENCFF580JZM.fastq.gz ENCFF387BTM fastq fastq reads ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 834131717 Bing Ren, UCSD b7a5e9e073404be7ffc6f7e69204beb7 SRA:SRR3652507 https://www.encodeproject.org/files/ENCFF387BTM/@@download/ENCFF387BTM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/ca729725-7e45-42e3-af71-55ef718d51b5/ENCFF387BTM.fastq.gz ENCFF131YVS fastq fastq reads ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 835240799 Bing Ren, UCSD 573cbd599bbf111f3332d6bf7b19277f SRA:SRR3652505 https://www.encodeproject.org/files/ENCFF131YVS/@@download/ENCFF131YVS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/73c9ae8c-6ef8-43db-928b-be5c6d6ee320/ENCFF131YVS.fastq.gz ENCFF072LCQ bam bam unfiltered alignments mm10 ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF131YVS/, /files/ENCFF580JZM/ 4229353961 ENCODE Processing Pipeline d3bd4fc9c20c0106b619a84b1cd05f06 https://www.encodeproject.org/files/ENCFF072LCQ/@@download/ENCFF072LCQ.bam released s3://encode-public/2016/07/18/a22cc4e5-4078-4468-94e9-90aaaea0004f/ENCFF072LCQ.bam ENCODE3 mm10 archived ENCFF493APT bam bam unfiltered alignments mm10 ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF387BTM/, /files/ENCFF037ZOC/, /files/ENCFF018NEO/ 4017117880 ENCODE Processing Pipeline f40b3112df71361a7c7119ee636a8448 https://www.encodeproject.org/files/ENCFF493APT/@@download/ENCFF493APT.bam released s3://encode-public/2016/07/18/9f645688-c9b9-459e-9287-b90ddc195fee/ENCFF493APT.bam ENCODE3 mm10 archived ENCFF837CRH bam bam alignments mm10 ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF131YVS/, /files/ENCFF580JZM/ 2924218788 ENCODE Processing Pipeline ea8dc04f42b75710b6cd51cb984e7541 https://www.encodeproject.org/files/ENCFF837CRH/@@download/ENCFF837CRH.bam released s3://encode-public/2016/07/18/723ab7f6-b7e8-4bb0-a212-8182d599008a/ENCFF837CRH.bam ENCODE3 mm10 archived ENCFF956XFI bam bam alignments mm10 ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF387BTM/, /files/ENCFF037ZOC/, /files/ENCFF018NEO/ 2795972550 ENCODE Processing Pipeline fac211477b4f06c39dabfa72a69aac79 https://www.encodeproject.org/files/ENCFF956XFI/@@download/ENCFF956XFI.bam released s3://encode-public/2016/07/18/a851fcaf-2e40-42ed-8384-ffc387f62dc9/ENCFF956XFI.bam ENCODE3 mm10 archived ENCFF334SCL bam bam unfiltered alignments mm10 ENCSR583ZEV Control ChIP-seq 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released ENCFF844HGM bam bam unfiltered alignments mm10 ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF131YVS/, /files/ENCFF580JZM/, /files/ENCFF309GLL/ 4116722962 ENCODE Processing Pipeline 670834807d4e904a4eacf9760621eee5 https://www.encodeproject.org/files/ENCFF844HGM/@@download/ENCFF844HGM.bam released s3://encode-public/2020/10/08/e111e103-bbdb-40eb-8a6b-a4fa158678e4/ENCFF844HGM.bam ENCODE4 v1.5.1 mm10 released ENCFF376HWE bam bam alignments mm10 ENCSR583ZEV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF037ZOC/, /files/ENCFF387BTM/, /files/ENCFF309GLL/ 2875924263 ENCODE Processing Pipeline 0151fb02fb94a7e4143e759e4d168e48 https://www.encodeproject.org/files/ENCFF376HWE/@@download/ENCFF376HWE.bam released 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https://www.encodeproject.org/files/ENCFF211SOO/@@download/ENCFF211SOO.bam released s3://encode-public/2020/09/03/5ec5722b-5330-4c35-90c2-6e8df9b5cff7/ENCFF211SOO.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF191YYG bam bam alignments GRCh38 ENCSR000DVL Control ChIP-seq /human-donors/ENCDO342AAA/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HSV/ 657453657 ENCODE Processing Pipeline 6304b15f761b208ac2a81ea13d8653d9 https://www.encodeproject.org/files/ENCFF191YYG/@@download/ENCFF191YYG.bam released s3://encode-public/2020/09/03/b352de01-dacb-44d0-852c-755d910465f1/ENCFF191YYG.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF927DNL fastq fastq reads ENCSR981QSV Control ChIP-seq /worm-donors/ENCDO080URV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': 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ce10 ENCSR981QSV Control ChIP-seq /worm-donors/ENCDO080URV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182466/'], '@type': ['Target', 'Item'], 'name': 'npax-4-celegans', 'label': 'npax-4', '@id': '/targets/npax-4-celegans/', 'title': 'npax-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1b2556c-3b7a-42b3-a2a3-11c01be83c7e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF927DNL/ 1039091939 Kevin White, UChicago fc9f18d4717b268a27a8f08aabc5c948 https://www.encodeproject.org/files/ENCFF306CTU/@@download/ENCFF306CTU.bam released s3://encode-public/2015/08/07/fedf7951-937f-4bb7-af5e-0ba430ce9fc5/ENCFF306CTU.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF758YTW bigWig bigWig signal of unique reads ce10 ENCSR981QSV Control ChIP-seq /worm-donors/ENCDO080URV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182466/'], '@type': ['Target', 'Item'], 'name': 'npax-4-celegans', 'label': 'npax-4', '@id': '/targets/npax-4-celegans/', 'title': 'npax-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1b2556c-3b7a-42b3-a2a3-11c01be83c7e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF306CTU/ 9984014 Kevin White, UChicago 19aa02053583333c23fbf61b2f2beb7f https://www.encodeproject.org/files/ENCFF758YTW/@@download/ENCFF758YTW.bigWig released s3://encode-public/2015/10/02/04d284ea-581d-449b-93d9-708e8f409616/ENCFF758YTW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF239TTN bigWig bigWig read-depth normalized signal ce10 ENCSR981QSV Control ChIP-seq /worm-donors/ENCDO080URV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182466/'], '@type': ['Target', 'Item'], 'name': 'npax-4-celegans', 'label': 'npax-4', '@id': '/targets/npax-4-celegans/', 'title': 'npax-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1b2556c-3b7a-42b3-a2a3-11c01be83c7e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF306CTU/ 10032075 Kevin White, UChicago e7dcc8f5ccd2e5fdf873a47b84fcf6f0 https://www.encodeproject.org/files/ENCFF239TTN/@@download/ENCFF239TTN.bigWig released s3://encode-public/2015/10/02/702b48a0-2965-4021-a33d-01b8b21a9d14/ENCFF239TTN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF079SSS bam bam alignments ce11 ENCSR981QSV Control ChIP-seq /worm-donors/ENCDO080URV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182466/'], '@type': ['Target', 'Item'], 'name': 'npax-4-celegans', 'label': 'npax-4', '@id': '/targets/npax-4-celegans/', 'title': 'npax-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1b2556c-3b7a-42b3-a2a3-11c01be83c7e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF927DNL/ 1039915748 Kevin White, UChicago 9c4ee6382284e1a54d2da7d463308fc9 https://www.encodeproject.org/files/ENCFF079SSS/@@download/ENCFF079SSS.bam released s3://encode-public/2016/01/19/0e9b5d49-0eeb-4db3-af57-c9d1996e0623/ENCFF079SSS.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF226PYA bigWig bigWig signal of unique reads ce11 ENCSR981QSV Control ChIP-seq /worm-donors/ENCDO080URV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182466/'], '@type': ['Target', 'Item'], 'name': 'npax-4-celegans', 'label': 'npax-4', '@id': '/targets/npax-4-celegans/', 'title': 'npax-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1b2556c-3b7a-42b3-a2a3-11c01be83c7e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF079SSS/ 9979680 Kevin White, UChicago f4888ee3d3f6f6a3d61120ca10fc5cc1 https://www.encodeproject.org/files/ENCFF226PYA/@@download/ENCFF226PYA.bigWig released s3://encode-public/2016/02/03/119f8857-fc9d-4d74-93c1-1607e7ce3fb4/ENCFF226PYA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF190NPF bigWig bigWig read-depth normalized signal ce11 ENCSR981QSV Control ChIP-seq /worm-donors/ENCDO080URV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182466/'], '@type': ['Target', 'Item'], 'name': 'npax-4-celegans', 'label': 'npax-4', '@id': '/targets/npax-4-celegans/', 'title': 'npax-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f1b2556c-3b7a-42b3-a2a3-11c01be83c7e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF079SSS/ 10026211 Kevin White, UChicago 37f4d583060744c56876b99e6a9dff2e https://www.encodeproject.org/files/ENCFF190NPF/@@download/ENCFF190NPF.bigWig released s3://encode-public/2016/02/03/557215fe-46dc-418a-bac9-e034f54849fc/ENCFF190NPF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF010LTF fastq fastq reads ENCSR033RMH Control ChIP-seq /fly-donors/ENCDO186GEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37668/'], '@type': ['Target', 'Item'], 'name': 'CG9876-dmelanogaster', 'label': 'CG9876', '@id': '/targets/CG9876-dmelanogaster/', 'title': 'CG9876 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a66fc33-3eb0-4d22-97cc-4053c6ccc676', 'status': 'released'} dm3 2R 18968904 18990054 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 740292364 Kevin White, UChicago a490b0fddfe784ae43dcb4e1075291cb https://www.encodeproject.org/files/ENCFF010LTF/@@download/ENCFF010LTF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/22453f54-0730-4649-b0fb-38d85914e078/ENCFF010LTF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF161PKG bam bam alignments dm3 ENCSR033RMH Control ChIP-seq /fly-donors/ENCDO186GEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37668/'], '@type': ['Target', 'Item'], 'name': 'CG9876-dmelanogaster', 'label': 'CG9876', '@id': '/targets/CG9876-dmelanogaster/', 'title': 'CG9876 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a66fc33-3eb0-4d22-97cc-4053c6ccc676', 'status': 'released'} dm3 2R 18968904 18990054 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF010LTF/ 1072800601 Kevin White, UChicago cdaf965a0d7cb99718f957db5eb67c80 https://www.encodeproject.org/files/ENCFF161PKG/@@download/ENCFF161PKG.bam released s3://encode-public/2015/08/03/4e7e56d0-3c81-4060-9437-9107d6bb610b/ENCFF161PKG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF438DQC bigWig bigWig signal of unique reads dm3 ENCSR033RMH Control ChIP-seq /fly-donors/ENCDO186GEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37668/'], '@type': ['Target', 'Item'], 'name': 'CG9876-dmelanogaster', 'label': 'CG9876', '@id': '/targets/CG9876-dmelanogaster/', 'title': 'CG9876 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a66fc33-3eb0-4d22-97cc-4053c6ccc676', 'status': 'released'} dm3 2R 18968904 18990054 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF161PKG/ 15390991 Kevin White, UChicago f411693dd18573f4e2d7588b23fd0c6f https://www.encodeproject.org/files/ENCFF438DQC/@@download/ENCFF438DQC.bigWig released s3://encode-public/2015/10/06/2e054293-9a00-4a41-955a-22706316352b/ENCFF438DQC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF530EPK bigWig bigWig read-depth normalized signal dm3 ENCSR033RMH Control ChIP-seq /fly-donors/ENCDO186GEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37668/'], '@type': ['Target', 'Item'], 'name': 'CG9876-dmelanogaster', 'label': 'CG9876', '@id': '/targets/CG9876-dmelanogaster/', 'title': 'CG9876 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a66fc33-3eb0-4d22-97cc-4053c6ccc676', 'status': 'released'} dm3 2R 18968904 18990054 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF161PKG/ 15388181 Kevin White, UChicago d12f9db8dcb964adba3fab52fbbf174b https://www.encodeproject.org/files/ENCFF530EPK/@@download/ENCFF530EPK.bigWig released s3://encode-public/2015/10/06/1be34b23-635d-4a94-86b6-d83f98d48c0c/ENCFF530EPK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF092XRG bam bam alignments dm6 ENCSR033RMH Control ChIP-seq /fly-donors/ENCDO186GEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37668/'], '@type': ['Target', 'Item'], 'name': 'CG9876-dmelanogaster', 'label': 'CG9876', '@id': '/targets/CG9876-dmelanogaster/', 'title': 'CG9876 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a66fc33-3eb0-4d22-97cc-4053c6ccc676', 'status': 'released'} dm3 2R 18968904 18990054 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF010LTF/ 1069749748 Kevin White, UChicago 2ac5d9b542ac857f6f17ec3dc7beb053 https://www.encodeproject.org/files/ENCFF092XRG/@@download/ENCFF092XRG.bam released s3://encode-public/2016/04/21/7668f710-aa0a-40e7-934a-586bbc6466cb/ENCFF092XRG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF953NED bigWig bigWig signal of unique reads dm6 ENCSR033RMH Control ChIP-seq /fly-donors/ENCDO186GEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37668/'], '@type': ['Target', 'Item'], 'name': 'CG9876-dmelanogaster', 'label': 'CG9876', '@id': '/targets/CG9876-dmelanogaster/', 'title': 'CG9876 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a66fc33-3eb0-4d22-97cc-4053c6ccc676', 'status': 'released'} dm3 2R 18968904 18990054 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF092XRG/ 17458269 Kevin White, UChicago 5b55f1459dd5091158cb0cc37762c3a7 https://www.encodeproject.org/files/ENCFF953NED/@@download/ENCFF953NED.bigWig released s3://encode-public/2016/06/21/1cc9ae90-058d-403f-9d6a-98dc63fe6a06/ENCFF953NED.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF563ZAI bigWig bigWig read-depth normalized signal dm6 ENCSR033RMH Control ChIP-seq /fly-donors/ENCDO186GEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37668/'], '@type': ['Target', 'Item'], 'name': 'CG9876-dmelanogaster', 'label': 'CG9876', '@id': '/targets/CG9876-dmelanogaster/', 'title': 'CG9876 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a66fc33-3eb0-4d22-97cc-4053c6ccc676', 'status': 'released'} dm3 2R 18968904 18990054 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF092XRG/ 17462665 Kevin White, UChicago 0ae70fc0a68ca0beb1e44b1fe7dc0255 https://www.encodeproject.org/files/ENCFF563ZAI/@@download/ENCFF563ZAI.bigWig released s3://encode-public/2016/06/21/53228a80-fd53-4d11-978d-2ed5cea71773/ENCFF563ZAI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF330VNE fastq fastq reads ENCSR340PDD Control ChIP-seq /fly-donors/ENCDO233RVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37836/'], '@type': ['Target', 'Item'], 'name': 'CG3163-dmelanogaster', 'label': 'CG3163', '@id': '/targets/CG3163-dmelanogaster/', 'title': 'CG3163 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2cdd0e26-c7a1-4335-8e79-6179ba831a5d', 'status': 'released'} dm3 2R 19909793 19928019 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 596727401 Kevin White, UChicago 20493f1f256025019835153e80b530e7 https://www.encodeproject.org/files/ENCFF330VNE/@@download/ENCFF330VNE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/a4fbd316-37ed-4b90-8a13-f53155d1fc9e/ENCFF330VNE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF662MLO bam bam alignments dm3 ENCSR340PDD Control ChIP-seq /fly-donors/ENCDO233RVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37836/'], '@type': ['Target', 'Item'], 'name': 'CG3163-dmelanogaster', 'label': 'CG3163', '@id': '/targets/CG3163-dmelanogaster/', 'title': 'CG3163 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2cdd0e26-c7a1-4335-8e79-6179ba831a5d', 'status': 'released'} dm3 2R 19909793 19928019 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF330VNE/ 855459272 Kevin White, UChicago 4a0dacfad78fc28b8e162db7de5ef065 https://www.encodeproject.org/files/ENCFF662MLO/@@download/ENCFF662MLO.bam released s3://encode-public/2015/08/03/05a0ee1c-53e6-4ac3-a129-377f09125098/ENCFF662MLO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF294QBH bigWig bigWig read-depth normalized signal dm3 ENCSR340PDD Control ChIP-seq /fly-donors/ENCDO233RVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37836/'], '@type': ['Target', 'Item'], 'name': 'CG3163-dmelanogaster', 'label': 'CG3163', '@id': '/targets/CG3163-dmelanogaster/', 'title': 'CG3163 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2cdd0e26-c7a1-4335-8e79-6179ba831a5d', 'status': 'released'} dm3 2R 19909793 19928019 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF662MLO/ 15404467 Kevin White, UChicago 670fd936a15fd1b93b5e6bec5c1cc579 https://www.encodeproject.org/files/ENCFF294QBH/@@download/ENCFF294QBH.bigWig released s3://encode-public/2015/10/06/7977881d-bbec-455e-9988-449463c33e8c/ENCFF294QBH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF659JDT bigWig bigWig signal of unique reads dm3 ENCSR340PDD Control ChIP-seq /fly-donors/ENCDO233RVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37836/'], '@type': ['Target', 'Item'], 'name': 'CG3163-dmelanogaster', 'label': 'CG3163', '@id': '/targets/CG3163-dmelanogaster/', 'title': 'CG3163 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2cdd0e26-c7a1-4335-8e79-6179ba831a5d', 'status': 'released'} dm3 2R 19909793 19928019 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF662MLO/ 15354859 Kevin White, UChicago 3f3c7023c81643015bbb86c5d78bbcaf https://www.encodeproject.org/files/ENCFF659JDT/@@download/ENCFF659JDT.bigWig released s3://encode-public/2015/10/06/5831f8e2-9672-42f0-aac7-7c82bbfafc75/ENCFF659JDT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF293PGL bam bam alignments dm6 ENCSR340PDD Control ChIP-seq /fly-donors/ENCDO233RVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37836/'], '@type': ['Target', 'Item'], 'name': 'CG3163-dmelanogaster', 'label': 'CG3163', '@id': '/targets/CG3163-dmelanogaster/', 'title': 'CG3163 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2cdd0e26-c7a1-4335-8e79-6179ba831a5d', 'status': 'released'} dm3 2R 19909793 19928019 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF330VNE/ 852462049 Kevin White, UChicago 3cc24bf0ad5a6e064889106beccec658 https://www.encodeproject.org/files/ENCFF293PGL/@@download/ENCFF293PGL.bam released s3://encode-public/2016/04/21/a5d257d8-5213-4090-902a-07b206bb982b/ENCFF293PGL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF028MBP bigWig bigWig read-depth normalized signal dm6 ENCSR340PDD Control ChIP-seq /fly-donors/ENCDO233RVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37836/'], '@type': ['Target', 'Item'], 'name': 'CG3163-dmelanogaster', 'label': 'CG3163', '@id': '/targets/CG3163-dmelanogaster/', 'title': 'CG3163 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2cdd0e26-c7a1-4335-8e79-6179ba831a5d', 'status': 'released'} dm3 2R 19909793 19928019 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF293PGL/ 17531103 Kevin White, UChicago 0922b73b5eed07a095e0005a8b3b7ae3 https://www.encodeproject.org/files/ENCFF028MBP/@@download/ENCFF028MBP.bigWig released s3://encode-public/2016/06/20/eae61e78-9d3b-47fa-9c0b-b1b46fbd5374/ENCFF028MBP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF271YKN bigWig bigWig signal of unique reads dm6 ENCSR340PDD Control ChIP-seq /fly-donors/ENCDO233RVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37836/'], '@type': ['Target', 'Item'], 'name': 'CG3163-dmelanogaster', 'label': 'CG3163', '@id': '/targets/CG3163-dmelanogaster/', 'title': 'CG3163 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2cdd0e26-c7a1-4335-8e79-6179ba831a5d', 'status': 'released'} dm3 2R 19909793 19928019 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF293PGL/ 17462140 Kevin White, UChicago bb12a8883476c7150dca15407232ea42 https://www.encodeproject.org/files/ENCFF271YKN/@@download/ENCFF271YKN.bigWig released s3://encode-public/2016/06/20/e155b61e-e88d-40ff-bf10-999b459ff580/ENCFF271YKN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HPJ bam bam alignments hg19 ENCSR000DUR Control ChIP-seq /human-donors/ENCDO343AAA/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HPU/ 699915150 John Stamatoyannopoulos, UW 84f1f647c7fa6a8fa6755ac90a37f496 https://www.encodeproject.org/files/ENCFF001HPJ/@@download/ENCFF001HPJ.bam archived s3://encode-public/2011/06/25/57940458-b077-4a08-baad-f10be50c0fe7/ENCFF001HPJ.bam Lab custom hg19 archived low read depth, low read length ENCFF001HPK 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s3://encode-public/2016/08/09/7dcf2a9c-7f75-46cf-b61b-372bcaecf811/ENCFF163IHR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF843OXE bam bam unfiltered alignments hg19 ENCSR000DUR Control ChIP-seq /human-donors/ENCDO343AAA/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HPU/, /files/ENCFF807MUK/ 911290988 ENCODE Processing Pipeline d1e91d133365f3a3d53521229fe3f914 https://www.encodeproject.org/files/ENCFF843OXE/@@download/ENCFF843OXE.bam released s3://encode-public/2016/11/13/5e194bf0-884a-48e4-98fa-f3946266efd9/ENCFF843OXE.bam ENCODE3 hg19 archived low read depth, low read length ENCFF620RYQ bam bam alignments hg19 ENCSR000DUR Control ChIP-seq /human-donors/ENCDO343AAA/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HPU/, /files/ENCFF807MUK/ 642539846 ENCODE Processing Pipeline bb37985d0bd214b435df71dc76f7c753 https://www.encodeproject.org/files/ENCFF620RYQ/@@download/ENCFF620RYQ.bam released s3://encode-public/2016/11/13/fa78787a-71bb-4d44-9774-dd670145012c/ENCFF620RYQ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF563EAK bam bam unfiltered alignments GRCh38 ENCSR000DUR Control ChIP-seq /human-donors/ENCDO343AAA/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HPU/ 895648047 ENCODE Processing Pipeline 52470dda6867c25f3c9a734b098f784c https://www.encodeproject.org/files/ENCFF563EAK/@@download/ENCFF563EAK.bam released s3://encode-public/2020/09/03/bc2701e7-d9c3-4969-9db0-9277c805491b/ENCFF563EAK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF522LKL bam bam alignments GRCh38 ENCSR000DUR Control ChIP-seq /human-donors/ENCDO343AAA/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, 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Bernstein, Broad fd1d4e2ef420c1b1f8acaef95711660a https://www.encodeproject.org/files/ENCFF702KBP/@@download/ENCFF702KBP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e6ae3852-ba29-43a8-a4c3-5adbaf430a91/ENCFF702KBP.fastq.gz ENCFF890ZJR fastq fastq reads ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 365269590 Bradley Bernstein, Broad 28cad9fcf3355e9e6b0f1984f44fc66d https://www.encodeproject.org/files/ENCFF890ZJR/@@download/ENCFF890ZJR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/90f705e6-3c14-423e-9f0f-26f9adb5c6e0/ENCFF890ZJR.fastq.gz ENCFF013TZB fastq fastq reads ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 374340556 Bradley Bernstein, Broad e6907654c8ec8e97c02d4527e54cb675 https://www.encodeproject.org/files/ENCFF013TZB/@@download/ENCFF013TZB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/77905c7e-a9ad-4a56-b567-e248e236abc2/ENCFF013TZB.fastq.gz ENCFF028USO fastq fastq reads ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 323150963 Bradley Bernstein, Broad 3091c8784c52e1d55fba9cd3eb8d2412 https://www.encodeproject.org/files/ENCFF028USO/@@download/ENCFF028USO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/adbbdc66-0312-4b67-9d09-22fe5850b83d/ENCFF028USO.fastq.gz ENCFF458JSZ fastq fastq reads ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 324352147 Bradley Bernstein, Broad a50d6f18aa377148a45e989dd2f603dc https://www.encodeproject.org/files/ENCFF458JSZ/@@download/ENCFF458JSZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/15fbe9ce-fa99-460a-8fa0-35d8b5126a96/ENCFF458JSZ.fastq.gz ENCFF475GLP fastq fastq reads ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 325617131 Bradley Bernstein, Broad 95a48382ff4fe1b8729f097299a0252a https://www.encodeproject.org/files/ENCFF475GLP/@@download/ENCFF475GLP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e7b31fe1-08ed-4027-9a9c-8d47fe468a7a/ENCFF475GLP.fastq.gz ENCFF859HVR fastq fastq reads ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 325166366 Bradley Bernstein, Broad 7f5f72e137cfae84d3ba37e471d75ed7 https://www.encodeproject.org/files/ENCFF859HVR/@@download/ENCFF859HVR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/77dda2d0-930d-4c3e-825d-b2acf258814c/ENCFF859HVR.fastq.gz ENCFF620PKH bam bam unfiltered alignments GRCh38 ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF702KBP/, /files/ENCFF458JSZ/, /files/ENCFF890ZJR/, /files/ENCFF859HVR/, /files/ENCFF028USO/, /files/ENCFF013TZB/, /files/ENCFF139APE/, /files/ENCFF110MCL/, /files/ENCFF475GLP/ 2785494844 ENCODE Processing Pipeline 3e8c5453b18798a3457aeddfd5f8fa57 https://www.encodeproject.org/files/ENCFF620PKH/@@download/ENCFF620PKH.bam released s3://encode-public/2021/09/15/5d39fced-c2bf-4236-b1c7-cbea691804b7/ENCFF620PKH.bam ENCODE4 v1.8.0 GRCh38 released ENCFF579FLB bam bam alignments GRCh38 ENCSR405BDN Control ChIP-seq /human-donors/ENCDO290OPS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF702KBP/, /files/ENCFF458JSZ/, /files/ENCFF890ZJR/, /files/ENCFF859HVR/, /files/ENCFF028USO/, /files/ENCFF013TZB/, /files/ENCFF139APE/, /files/ENCFF110MCL/, /files/ENCFF475GLP/ 2369917783 ENCODE Processing Pipeline b806b5f794d5d25db32bb3afa98ea66b https://www.encodeproject.org/files/ENCFF579FLB/@@download/ENCFF579FLB.bam released s3://encode-public/2021/09/15/da8f236f-02f5-48f7-ae46-d2b422c7e135/ENCFF579FLB.bam ENCODE4 v1.8.0 GRCh38 released ENCFF963PAM fastq fastq reads ENCSR977MGF Control ChIP-seq /worm-donors/ENCDO075QZP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 735530169 Kevin White, UChicago 46f96897ee0481da924f914625d52a40 https://www.encodeproject.org/files/ENCFF963PAM/@@download/ENCFF963PAM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/e504793f-4076-4cc7-9da2-346ca04750b4/ENCFF963PAM.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF549RDM bam bam alignments ce10 ENCSR977MGF Control ChIP-seq /worm-donors/ENCDO075QZP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF963PAM/ 1047275164 Kevin White, UChicago b15a0ad719e929db1bdc1f6485f63694 https://www.encodeproject.org/files/ENCFF549RDM/@@download/ENCFF549RDM.bam released s3://encode-public/2015/08/19/ad39ff92-40c0-45b9-a8ea-3b612b750722/ENCFF549RDM.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF543MQG bigWig bigWig read-depth normalized signal ce10 ENCSR977MGF Control ChIP-seq /worm-donors/ENCDO075QZP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF549RDM/ 10021861 Kevin White, UChicago ef9779a8c38edf1b74168cdf4cc2ae5b https://www.encodeproject.org/files/ENCFF543MQG/@@download/ENCFF543MQG.bigWig released s3://encode-public/2015/10/02/e663dab7-0541-48a8-8673-7e47f6498ca5/ENCFF543MQG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF900FFD bigWig bigWig signal of unique reads ce10 ENCSR977MGF Control ChIP-seq /worm-donors/ENCDO075QZP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF549RDM/ 9981926 Kevin White, UChicago 7ba2ef95f72140d1878727fe542eb028 https://www.encodeproject.org/files/ENCFF900FFD/@@download/ENCFF900FFD.bigWig released s3://encode-public/2015/10/02/97235a4d-b4f8-4c83-9d13-b6fc6de5fa98/ENCFF900FFD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF825BTI bam bam alignments ce11 ENCSR977MGF Control ChIP-seq /worm-donors/ENCDO075QZP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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Control ChIP-seq /worm-donors/ENCDO075QZP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF825BTI/ 9978117 Kevin White, UChicago 06dd1845e2a17a567f4d120be99d6476 https://www.encodeproject.org/files/ENCFF559FLZ/@@download/ENCFF559FLZ.bigWig released s3://encode-public/2016/02/03/8f3224ec-e145-4f71-a1fe-ccd29741e76c/ENCFF559FLZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF035UAK bigWig bigWig read-depth normalized signal ce11 ENCSR977MGF Control ChIP-seq /worm-donors/ENCDO075QZP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF825BTI/ 10013471 Kevin White, UChicago e5bf372b70cb45fd4d581dcf8d4acd37 https://www.encodeproject.org/files/ENCFF035UAK/@@download/ENCFF035UAK.bigWig released s3://encode-public/2016/02/03/99939177-ba65-4231-8049-c6f1c7459aef/ENCFF035UAK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF000CLV bam bam alignments hg19 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000CMD/ 660618994 Bradley Bernstein, Broad ccf2c3a2329158a8992043aca96bd863 https://www.encodeproject.org/files/ENCFF000CLV/@@download/ENCFF000CLV.bam archived s3://encode-public/2010/11/16/53545c31-e6a5-4bbb-ba17-324cc8c246c1/ENCFF000CLV.bam Lab custom hg19 archived low read length, mixed read lengths insufficient read depth ENCFF000CLW bam bam alignments hg19 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 36 /files/ENCFF000CMJ/ 486906661 Bradley Bernstein, Broad abfce110cda82e966c43407ed7208fa4 https://www.encodeproject.org/files/ENCFF000CLW/@@download/ENCFF000CLW.bam archived s3://encode-public/2010/11/16/59ed296a-1e49-41d2-9c56-6e7dd3c70210/ENCFF000CLW.bam Lab custom hg19 archived low read length, mixed read lengths insufficient read depth ENCFF000CLX bigWig bigWig signal hg19 ENCSR000ALS Control ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 439530745 Bradley Bernstein, Broad 3f8dadeb4759974d6c0aa09b1273f53f https://www.encodeproject.org/files/ENCFF000CLX/@@download/ENCFF000CLX.bigWig archived s3://encode-public/2010/11/16/644530a9-a0de-4785-a3a2-a2ce8d08daca/ENCFF000CLX.bigWig Lab custom hg19 archived low read length, mixed read lengths insufficient read depth ENCFF000CMD fastq fastq reads ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 single-ended 954747894 Bradley Bernstein, Broad b25981e165739d67f1065d19be3a6525 SRA:SRR5331353 https://www.encodeproject.org/files/ENCFF000CMD/@@download/ENCFF000CMD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/b15f12dc-6800-44cb-a82c-01acc963e08a/ENCFF000CMD.fastq.gz low read length, mixed read lengths insufficient read depth ENCFF000CMJ fastq fastq reads ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 51 single-ended 888556486 Bradley Bernstein, Broad 7d68adc1e8ac33c68b3dabb06b6a3456 SRA:SRR5331354 https://www.encodeproject.org/files/ENCFF000CMJ/@@download/ENCFF000CMJ.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/3ab4f65e-9179-4c41-96e2-d87b14579fd8/ENCFF000CMJ.fastq.gz low read length, mixed read lengths insufficient read depth ENCFF316KUT bam bam alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000CMD/ 446625437 ENCODE Processing Pipeline caf65716c2e3a09c3883f90410344109 https://www.encodeproject.org/files/ENCFF316KUT/@@download/ENCFF316KUT.bam released s3://encode-public/2020/09/16/0b24def3-f7fe-4cce-9e59-7f6b1028f6df/ENCFF316KUT.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths insufficient read depth ENCFF604QBU bam bam unfiltered alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000CMD/ 1127027494 ENCODE Processing Pipeline afb0374c56a846edbb926f21ea9cc158 https://www.encodeproject.org/files/ENCFF604QBU/@@download/ENCFF604QBU.bam released s3://encode-public/2016/08/09/69f706c8-4c76-4d1b-8b80-1572a4de6709/ENCFF604QBU.bam ENCODE3 GRCh38 archived low read length, mixed read lengths insufficient read depth ENCFF292GHV bam bam alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000CMD/ 384440018 ENCODE Processing Pipeline d1182f59dcf529de2c0a040af694038e https://www.encodeproject.org/files/ENCFF292GHV/@@download/ENCFF292GHV.bam released s3://encode-public/2016/08/09/f075ed6c-7671-4566-91db-434c327a7af9/ENCFF292GHV.bam ENCODE3 GRCh38 archived low read length, mixed read lengths insufficient read depth ENCFF221LXY bam bam alignments hg19 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000CMD/ 384544283 ENCODE Processing Pipeline ec4570b578e876fc547ab22f2225363c https://www.encodeproject.org/files/ENCFF221LXY/@@download/ENCFF221LXY.bam released s3://encode-public/2016/11/18/afa6107a-2fbc-4f39-9c04-675b00a34bcc/ENCFF221LXY.bam ENCODE3 hg19 archived low read length, mixed read lengths insufficient read depth ENCFF377CTF bam bam unfiltered alignments hg19 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000CMD/ 1123184950 ENCODE Processing Pipeline 5bafd1bdf845fa18a635614fc76f1ad9 https://www.encodeproject.org/files/ENCFF377CTF/@@download/ENCFF377CTF.bam released s3://encode-public/2016/11/18/87dd76e4-f908-4dab-899f-cbfde814fd25/ENCFF377CTF.bam ENCODE3 hg19 archived low read length, mixed read lengths insufficient read depth ENCFF516NPM tagAlign tagAlign alignments hg19 ENCSR000ALS Control ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 141435314 Anshul Kundaje, Stanford af6ad6e3c64b2fcdd6ea4f34a6979fc5 https://www.encodeproject.org/files/ENCFF516NPM/@@download/ENCFF516NPM.tagAlign.gz archived s3://encode-public/2016/07/19/9b388f50-e582-4e52-b958-6be778d9471b/ENCFF516NPM.tagAlign.gz Lab custom hg19 archived low read length, mixed read lengths insufficient read depth ENCFF050XUG bam bam unfiltered alignments hg19 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 36 /files/ENCFF000CMJ/, /files/ENCFF807MUK/ 785991179 ENCODE Processing Pipeline 8f4e24c72895462d5e18612733eeecef https://www.encodeproject.org/files/ENCFF050XUG/@@download/ENCFF050XUG.bam released s3://encode-public/2017/03/13/43b9fbee-159d-4925-936c-7a1f36c86f12/ENCFF050XUG.bam ENCODE3 hg19 archived low read length, mixed read lengths insufficient read depth ENCFF288LLD bam bam alignments hg19 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 36 /files/ENCFF000CMJ/, /files/ENCFF807MUK/ 332447690 ENCODE Processing Pipeline fa8445beab5b39ca4bb4aed7310ceb43 https://www.encodeproject.org/files/ENCFF288LLD/@@download/ENCFF288LLD.bam released s3://encode-public/2017/03/13/3ef2dca4-56ef-4c05-9dda-8294e5199c20/ENCFF288LLD.bam ENCODE3 hg19 archived low read length, mixed read lengths insufficient read depth ENCFF587LRA bam bam unfiltered alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 36 /files/ENCFF000CMJ/, /files/ENCFF643CGH/ 788601762 ENCODE Processing Pipeline 49c9140b8a9e6172ccb7966baf58ea5c https://www.encodeproject.org/files/ENCFF587LRA/@@download/ENCFF587LRA.bam released s3://encode-public/2017/03/13/b49e1053-364b-4eb2-b880-f7afaf1a6786/ENCFF587LRA.bam ENCODE3 GRCh38 archived low read length, mixed read lengths insufficient read depth ENCFF715NGU bam bam alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 36 /files/ENCFF000CMJ/, /files/ENCFF643CGH/ 332273364 ENCODE Processing Pipeline 7d0d17fa48b0d3630843fad054db1e76 https://www.encodeproject.org/files/ENCFF715NGU/@@download/ENCFF715NGU.bam released s3://encode-public/2017/03/13/eab4a4bf-29cd-4c58-9449-55c9e6a6ab8c/ENCFF715NGU.bam ENCODE3 GRCh38 archived low read length, mixed read lengths insufficient read depth ENCFF488PQU bam bam unfiltered alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000CMD/ 1123823627 ENCODE Processing Pipeline 03af60717d53b309c8ce83663986b073 https://www.encodeproject.org/files/ENCFF488PQU/@@download/ENCFF488PQU.bam released s3://encode-public/2020/09/16/81a00957-a766-438f-a026-1068a7e8c22c/ENCFF488PQU.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths insufficient read depth ENCFF995TOW bam bam unfiltered alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000CMJ/ 781913400 ENCODE Processing Pipeline df5f53642fbc1cc6a5305334b7c7489c https://www.encodeproject.org/files/ENCFF995TOW/@@download/ENCFF995TOW.bam released s3://encode-public/2020/09/16/a42d1b6a-30b9-4fc9-9d59-c75d3a4b819d/ENCFF995TOW.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths insufficient read depth ENCFF425ERN bam bam alignments GRCh38 ENCSR000ALS Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000CMJ/ 374395056 ENCODE Processing Pipeline de5e3f273d3e39d5cb1daeda96f38ed7 https://www.encodeproject.org/files/ENCFF425ERN/@@download/ENCFF425ERN.bam released s3://encode-public/2020/09/16/6c326fd2-ff16-4015-bcb3-c7881b80fa4a/ENCFF425ERN.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths insufficient read depth ENCFF148OZA bam bam unfiltered alignments hg19 ENCSR510ZTI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 6 6_2 50 /files/ENCFF302DND/, /files/ENCFF807MUK/ 1322680684 ENCODE Processing Pipeline eee671ef51266b7010b1bf4228b5e587 https://www.encodeproject.org/files/ENCFF148OZA/@@download/ENCFF148OZA.bam released s3://encode-public/2018/02/22/1f7f8ab1-e447-4c12-a8b6-a57cee0b1e6f/ENCFF148OZA.bam ENCODE3 hg19 archived low read depth ENCFF302DND fastq fastq reads ENCSR510ZTI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 6 6_2 50 single-ended 1229394158 Richard Myers, HAIB b6def00628355a4c83cc50ef0a4bcfd1 SRA:SRR8659937 https://www.encodeproject.org/files/ENCFF302DND/@@download/ENCFF302DND.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/04/06/0484447e-4b7c-47e0-b662-50855c6b4f73/ENCFF302DND.fastq.gz low read depth ENCFF245EYR bam bam alignments hg19 ENCSR510ZTI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 6 6_2 50 /files/ENCFF302DND/, /files/ENCFF807MUK/ 1024212937 ENCODE Processing Pipeline ac25cc64b1e516c3a8c952dba06a5b88 https://www.encodeproject.org/files/ENCFF245EYR/@@download/ENCFF245EYR.bam released s3://encode-public/2015/11/17/17260950-4c8b-49b8-96e8-826944271120/ENCFF245EYR.bam ENCODE3 hg19 archived low read depth ENCFF507WOL bam bam unfiltered alignments GRCh38 ENCSR510ZTI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 6 6_2 50 /files/ENCFF302DND/, /files/ENCFF643CGH/ 1326686807 ENCODE Processing Pipeline b97f804c14ac046f8c9f27dc4fdf2225 https://www.encodeproject.org/files/ENCFF507WOL/@@download/ENCFF507WOL.bam released s3://encode-public/2016/05/06/aee3afbc-e154-41cb-b13b-b1ef98bdf482/ENCFF507WOL.bam ENCODE3 GRCh38 archived low read depth ENCFF269BJQ bam bam alignments GRCh38 ENCSR510ZTI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 6 6_2 50 /files/ENCFF302DND/, /files/ENCFF643CGH/ 1023982841 ENCODE Processing Pipeline bfe5c044dc17a66c4b9e51a9523ecc4a https://www.encodeproject.org/files/ENCFF269BJQ/@@download/ENCFF269BJQ.bam released s3://encode-public/2016/05/06/64561ea4-0dc0-4dc1-9cfb-bc478b40bfc6/ENCFF269BJQ.bam ENCODE3 GRCh38 archived low read depth ENCFF568EZK bam bam alignments GRCh38 ENCSR510ZTI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 6 6_2 50 /files/ENCFF110MCL/, /files/ENCFF302DND/ 1073488946 ENCODE Processing Pipeline c281efb1722d85140d69b3d69c7a74ee https://www.encodeproject.org/files/ENCFF568EZK/@@download/ENCFF568EZK.bam released s3://encode-public/2020/10/27/7d09d8f8-1832-4a81-a472-47661b4cf9f3/ENCFF568EZK.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF907BSR bam bam unfiltered alignments GRCh38 ENCSR510ZTI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 6 6_2 50 /files/ENCFF110MCL/, /files/ENCFF302DND/ 1319448639 ENCODE Processing Pipeline a76f10330a6634273c7fbb279aaf121b https://www.encodeproject.org/files/ENCFF907BSR/@@download/ENCFF907BSR.bam released s3://encode-public/2020/10/27/cac2b2d2-3b93-41b0-8e48-68ffe8436efb/ENCFF907BSR.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF000NFO bigWig bigWig raw signal hg19 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 41329299 Richard Myers, HAIB 6800fbd3140026a7bb479fb0c39aa5bb https://www.encodeproject.org/files/ENCFF000NFO/@@download/ENCFF000NFO.bigWig archived s3://encode-public/2012/01/23/c825ac37-c798-4103-8bb6-848ab338f636/ENCFF000NFO.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000NFP bam bam alignments hg19 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFZ/ 1311807732 Richard Myers, HAIB aa681b7269f04804263b82558d36f137 https://www.encodeproject.org/files/ENCFF000NFP/@@download/ENCFF000NFP.bam archived s3://encode-public/2012/01/23/554f4f58-092e-4492-8ba8-996b9647fa3a/ENCFF000NFP.bam Lab custom hg19 archived low read depth, low read length ENCFF000NFZ fastq fastq reads ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 966713956 Richard Myers, HAIB 66027fc084fae37a1bc065fcad469bfa https://www.encodeproject.org/files/ENCFF000NFZ/@@download/ENCFF000NFZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/84196b06-7574-432e-bb78-e2bd1e011078/ENCFF000NFZ.fastq.gz low read depth, low read length ENCFF594SCK bam bam unfiltered alignments GRCh38 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFZ/, /files/ENCFF643CGH/ 1252223771 ENCODE Processing Pipeline 0679af9e7b830e74b704d006e7f38e2c https://www.encodeproject.org/files/ENCFF594SCK/@@download/ENCFF594SCK.bam released s3://encode-public/2016/10/26/10c4abae-600a-4acc-905a-e84cf03c4912/ENCFF594SCK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF466VLR bam bam alignments GRCh38 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFZ/, /files/ENCFF643CGH/ 493318309 ENCODE Processing Pipeline fa4819e068d50bc6d730499a92e7ac2d https://www.encodeproject.org/files/ENCFF466VLR/@@download/ENCFF466VLR.bam released s3://encode-public/2016/10/26/8b0dca44-a6ae-4945-929d-3da303e977b8/ENCFF466VLR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF399NMG bam bam unfiltered alignments hg19 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFZ/, /files/ENCFF807MUK/ 1249276968 ENCODE Processing Pipeline 8671a718335d381c4b4d7b383c8b826c https://www.encodeproject.org/files/ENCFF399NMG/@@download/ENCFF399NMG.bam released s3://encode-public/2016/11/13/f3fce40d-7512-471a-bcf6-2ae28d5db4f5/ENCFF399NMG.bam ENCODE3 hg19 archived low read depth, low read length ENCFF161DLA bam bam alignments hg19 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFZ/, /files/ENCFF807MUK/ 493423319 ENCODE Processing Pipeline d10f482f34bd179a533601dcd4b93136 https://www.encodeproject.org/files/ENCFF161DLA/@@download/ENCFF161DLA.bam released s3://encode-public/2016/11/13/55ac8806-bf1f-4824-a75f-83544a7c314a/ENCFF161DLA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF713MRB bam bam unfiltered alignments GRCh38 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFZ/, /files/ENCFF110MCL/ 1231985227 ENCODE Processing Pipeline a08c591f66faadfefe5f145909deb26f https://www.encodeproject.org/files/ENCFF713MRB/@@download/ENCFF713MRB.bam released s3://encode-public/2020/10/28/b0d12173-7532-4a26-bd42-fc5d27cbcf80/ENCFF713MRB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF635OAL bam bam alignments GRCh38 ENCSR000BLA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFZ/, /files/ENCFF110MCL/ 567236211 ENCODE Processing Pipeline 015b17a705c6c6058eba41a45e0758a1 https://www.encodeproject.org/files/ENCFF635OAL/@@download/ENCFF635OAL.bam released s3://encode-public/2020/10/28/b57e6c99-9517-4cd7-9768-e762ac46f056/ENCFF635OAL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000VRC bam bam alignments hg19 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000VRQ/ 282670827 Michael Snyder, Stanford 6f7fe76581d67ae1e8c79a24992507c4 https://www.encodeproject.org/files/ENCFF000VRC/@@download/ENCFF000VRC.bam archived s3://encode-public/2012/07/01/ff55a019-2714-4a65-9cd5-8b2d2c79a5e9/ENCFF000VRC.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000VRD bam bam alignments hg19 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VRO/ 289395966 Michael Snyder, Stanford 5b8af16b1c86db6e26eed1ff2d580bfa https://www.encodeproject.org/files/ENCFF000VRD/@@download/ENCFF000VRD.bam archived s3://encode-public/2012/07/01/1bffa882-0606-49e3-8c9d-adbfb5950481/ENCFF000VRD.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000VRE bigWig bigWig signal hg19 ENCSR000DYN Control ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 307724639 Michael Snyder, Stanford 44135f68948374c71ed4c0295757e334 https://www.encodeproject.org/files/ENCFF000VRE/@@download/ENCFF000VRE.bigWig archived s3://encode-public/2012/07/01/d6b444c8-a536-4d1f-802d-6a7333e1f130/ENCFF000VRE.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000VRO fastq fastq reads ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 229908104 Michael Snyder, Stanford f8367df966d30afbdc43aef320db81c5 https://www.encodeproject.org/files/ENCFF000VRO/@@download/ENCFF000VRO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/094ef184-70e0-488f-b3b5-823ba0899614/ENCFF000VRO.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF000VRQ fastq fastq reads ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 226757988 Michael Snyder, Stanford 6cc534389d88c363cf3dca8d514c151a https://www.encodeproject.org/files/ENCFF000VRQ/@@download/ENCFF000VRQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/10dbdb8b-b62f-436a-9b46-2c2605aabe47/ENCFF000VRQ.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF140IDL bam bam unfiltered alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VRO/, /files/ENCFF643CGH/ 290705169 ENCODE Processing Pipeline 85a340e38cce16625c4bf43fe2e40b72 https://www.encodeproject.org/files/ENCFF140IDL/@@download/ENCFF140IDL.bam released s3://encode-public/2016/10/26/a0905a69-b503-4b71-8c4a-2856f2fdf801/ENCFF140IDL.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF750HFA bam bam unfiltered alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VRQ/ 284341046 ENCODE Processing Pipeline 1a5034e26b3512608c5d233e7e0664ac https://www.encodeproject.org/files/ENCFF750HFA/@@download/ENCFF750HFA.bam released s3://encode-public/2016/10/26/374296bd-679a-4fc0-b1cd-9c6b2c2ca18b/ENCFF750HFA.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF545MCH bam bam alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VRO/, /files/ENCFF643CGH/ 185072647 ENCODE Processing Pipeline 1c917183f30f103a9c8988ea5d321af0 https://www.encodeproject.org/files/ENCFF545MCH/@@download/ENCFF545MCH.bam released s3://encode-public/2016/10/26/0276c9c3-1ee9-4dc8-9309-f2b02a5ae9f1/ENCFF545MCH.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF369ALO bam bam alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VRQ/ 172228330 ENCODE Processing Pipeline 005a7b622a15f4134b96e3bdd5c87463 https://www.encodeproject.org/files/ENCFF369ALO/@@download/ENCFF369ALO.bam released s3://encode-public/2016/10/26/5f6f0445-38d7-4986-b4f0-e162d091ac8b/ENCFF369ALO.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF112TIV bam bam unfiltered alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000VRO/ 275801319 ENCODE Processing Pipeline c25ade4470f078a0ba39e07a817629bc https://www.encodeproject.org/files/ENCFF112TIV/@@download/ENCFF112TIV.bam released s3://encode-public/2020/10/27/12bdbc68-5e90-4040-ae6c-3ed2873d086d/ENCFF112TIV.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF098PPU bam bam alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VRQ/ 176816982 ENCODE Processing Pipeline 497337ff1212f809ce379f8abfde8cb8 https://www.encodeproject.org/files/ENCFF098PPU/@@download/ENCFF098PPU.bam released s3://encode-public/2020/10/27/ec98bf16-6a44-4c8a-89b8-91cb8ceea27a/ENCFF098PPU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF418ZHT bam bam unfiltered alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VRQ/ 270044768 ENCODE Processing Pipeline c25dbc307ecacdf587ef8be96a900d43 https://www.encodeproject.org/files/ENCFF418ZHT/@@download/ENCFF418ZHT.bam released s3://encode-public/2020/10/27/70d46484-fdbc-43f8-8e3b-6453ed5fb134/ENCFF418ZHT.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF480ILH bam bam alignments GRCh38 ENCSR000DYN Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000VRO/ 191549296 ENCODE Processing Pipeline 2264d66722e12a30c2ed18c5203b2c74 https://www.encodeproject.org/files/ENCFF480ILH/@@download/ENCFF480ILH.bam released s3://encode-public/2020/10/27/9c5ca541-4b34-4bc9-9279-a2a4f9f7c90e/ENCFF480ILH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF998IRH fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 490697492 Bradley Bernstein, Broad cd7f41f3c8672376e68c15c6b1b3ea9c SRA:SRR16809175 https://www.encodeproject.org/files/ENCFF998IRH/@@download/ENCFF998IRH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/eede868a-d072-4370-9f60-1d1e6d2bf277/ENCFF998IRH.fastq.gz ENCFF798AFZ fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 501404584 Bradley Bernstein, Broad 7f0d10ccdcbbb1eab8bea5678ad3c5ac SRA:SRR16809176 https://www.encodeproject.org/files/ENCFF798AFZ/@@download/ENCFF798AFZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/177bd256-7b9e-4264-9286-06a54d916e6a/ENCFF798AFZ.fastq.gz ENCFF420TOD fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 496834301 Bradley Bernstein, Broad ae09982170200b86a99354acf1a4fe16 SRA:SRR16809177 https://www.encodeproject.org/files/ENCFF420TOD/@@download/ENCFF420TOD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/0bdb554d-c2da-4301-ad17-a44fd019389a/ENCFF420TOD.fastq.gz ENCFF434JQK fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 497454645 Bradley Bernstein, Broad 1a3b4df250d5cc3f73c200f8f4b2e8cf SRA:SRR16809178 https://www.encodeproject.org/files/ENCFF434JQK/@@download/ENCFF434JQK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/2d3c18ba-6020-427f-8b06-0a63a34f5c27/ENCFF434JQK.fastq.gz ENCFF122XKL fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 421211567 Bradley Bernstein, Broad 592a06eb582859dcedb2e1ec62477847 SRA:SRR16809171 https://www.encodeproject.org/files/ENCFF122XKL/@@download/ENCFF122XKL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a13b0297-21fb-4426-aead-9bea41999ecc/ENCFF122XKL.fastq.gz ENCFF805DKX fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 423115280 Bradley Bernstein, Broad 5fada0f69410b361a80f3507b753e108 SRA:SRR16809172 https://www.encodeproject.org/files/ENCFF805DKX/@@download/ENCFF805DKX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/98ce0551-1aff-4486-a977-81448a05e73c/ENCFF805DKX.fastq.gz ENCFF780DJN fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 436211080 Bradley Bernstein, Broad 5af9c0cdf10b0c3604f2b97b44c12630 SRA:SRR16809173 https://www.encodeproject.org/files/ENCFF780DJN/@@download/ENCFF780DJN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/7dd92950-b411-4f5c-b1e8-0a742cfafcca/ENCFF780DJN.fastq.gz ENCFF295LFN fastq fastq reads ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 431148842 Bradley Bernstein, Broad a1cd9614a8b185ae6381a6f6a55d8278 SRA:SRR16809174 https://www.encodeproject.org/files/ENCFF295LFN/@@download/ENCFF295LFN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e8f533da-61b4-4412-bf50-ecee53ad78ac/ENCFF295LFN.fastq.gz ENCFF939FKO bam bam unfiltered alignments GRCh38 ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF122XKL/, /files/ENCFF780DJN/, /files/ENCFF798AFZ/, /files/ENCFF998IRH/, /files/ENCFF420TOD/, /files/ENCFF805DKX/, /files/ENCFF110MCL/, /files/ENCFF295LFN/, /files/ENCFF434JQK/ 3610700072 ENCODE Processing Pipeline 730b35fe0e62ed516dd1d535890a971a https://www.encodeproject.org/files/ENCFF939FKO/@@download/ENCFF939FKO.bam released s3://encode-public/2021/09/15/0198f9da-fa90-4fd7-aa6f-b89372a61e6b/ENCFF939FKO.bam ENCODE4 v1.8.0 GRCh38 released ENCFF944AYC bam bam alignments GRCh38 ENCSR061EXX Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF122XKL/, /files/ENCFF780DJN/, /files/ENCFF798AFZ/, /files/ENCFF998IRH/, /files/ENCFF420TOD/, /files/ENCFF805DKX/, /files/ENCFF110MCL/, /files/ENCFF295LFN/, /files/ENCFF434JQK/ 2964833622 ENCODE Processing Pipeline cd66df8f0739767d31a4c1bb61a34af4 https://www.encodeproject.org/files/ENCFF944AYC/@@download/ENCFF944AYC.bam released s3://encode-public/2021/09/15/f41b6d4a-0cbf-4488-8e88-a7ab87cc927f/ENCFF944AYC.bam ENCODE4 v1.8.0 GRCh38 released ENCFF484CUK fastq fastq reads ENCSR745OUC Control ChIP-seq /worm-donors/ENCDO845MTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182980/'], '@type': ['Target', 'Item'], 'name': 'hlh-12-celegans', 'label': 'hlh-12', '@id': '/targets/hlh-12-celegans/', 'title': 'hlh-12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a0fdd87d-ffa1-4692-8796-855c795d51c5', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 769896257 Kevin White, UChicago b3b4574280c04852568899ace974fc7a https://www.encodeproject.org/files/ENCFF484CUK/@@download/ENCFF484CUK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/d8c229ba-5a52-4136-9ad2-671bedf8c001/ENCFF484CUK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF733UPF bam bam alignments ce10 ENCSR745OUC Control ChIP-seq /worm-donors/ENCDO845MTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182980/'], '@type': ['Target', 'Item'], 'name': 'hlh-12-celegans', 'label': 'hlh-12', '@id': '/targets/hlh-12-celegans/', 'title': 'hlh-12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a0fdd87d-ffa1-4692-8796-855c795d51c5', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF484CUK/ 900527393 Kevin White, UChicago 961ba45132e37d6d2b013b6e58c8a548 https://www.encodeproject.org/files/ENCFF733UPF/@@download/ENCFF733UPF.bam released s3://encode-public/2015/08/19/15596da9-9952-40b1-b89a-e859b23019dd/ENCFF733UPF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF727FMH bigWig bigWig read-depth normalized signal ce10 ENCSR745OUC Control ChIP-seq /worm-donors/ENCDO845MTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182980/'], '@type': ['Target', 'Item'], 'name': 'hlh-12-celegans', 'label': 'hlh-12', '@id': '/targets/hlh-12-celegans/', 'title': 'hlh-12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a0fdd87d-ffa1-4692-8796-855c795d51c5', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF733UPF/ 9953650 Kevin White, UChicago e07443a50963e40f94b71e3577523fac https://www.encodeproject.org/files/ENCFF727FMH/@@download/ENCFF727FMH.bigWig released s3://encode-public/2015/10/02/e878146d-b6f3-4f6a-82c4-83ea39915c3d/ENCFF727FMH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF917DYJ bigWig bigWig signal of unique reads ce10 ENCSR745OUC Control ChIP-seq /worm-donors/ENCDO845MTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182980/'], '@type': ['Target', 'Item'], 'name': 'hlh-12-celegans', 'label': 'hlh-12', '@id': '/targets/hlh-12-celegans/', 'title': 'hlh-12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a0fdd87d-ffa1-4692-8796-855c795d51c5', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF733UPF/ 9951856 Kevin White, UChicago be3b8067b40247eb70ae36518a5beb5d https://www.encodeproject.org/files/ENCFF917DYJ/@@download/ENCFF917DYJ.bigWig released s3://encode-public/2015/10/02/f8aadb8a-9834-42fb-99c7-a1dbd451f42b/ENCFF917DYJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF610UVB bam bam alignments ce11 ENCSR745OUC Control ChIP-seq /worm-donors/ENCDO845MTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182980/'], '@type': ['Target', 'Item'], 'name': 'hlh-12-celegans', 'label': 'hlh-12', '@id': '/targets/hlh-12-celegans/', 'title': 'hlh-12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a0fdd87d-ffa1-4692-8796-855c795d51c5', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF484CUK/ 901235625 Kevin White, UChicago 1cb9ddd705e87f3c595e82f587b7ecba https://www.encodeproject.org/files/ENCFF610UVB/@@download/ENCFF610UVB.bam released s3://encode-public/2016/01/16/f98d11b8-a0ba-4d51-945f-e8f25315dd2c/ENCFF610UVB.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF965GMC bigWig bigWig signal of unique reads ce11 ENCSR745OUC Control ChIP-seq /worm-donors/ENCDO845MTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182980/'], '@type': ['Target', 'Item'], 'name': 'hlh-12-celegans', 'label': 'hlh-12', '@id': '/targets/hlh-12-celegans/', 'title': 'hlh-12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a0fdd87d-ffa1-4692-8796-855c795d51c5', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF610UVB/ 9946754 Kevin White, UChicago c0c487632aa13310867a81fff5974f66 https://www.encodeproject.org/files/ENCFF965GMC/@@download/ENCFF965GMC.bigWig released s3://encode-public/2016/02/03/48b4abd3-73b6-4da5-8de3-728b2f642cec/ENCFF965GMC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF129FEH bigWig bigWig read-depth normalized signal ce11 ENCSR745OUC Control ChIP-seq /worm-donors/ENCDO845MTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182980/'], '@type': ['Target', 'Item'], 'name': 'hlh-12-celegans', 'label': 'hlh-12', '@id': '/targets/hlh-12-celegans/', 'title': 'hlh-12 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a0fdd87d-ffa1-4692-8796-855c795d51c5', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF610UVB/ 9947366 Kevin White, UChicago fb3c83a7eedf489b269e7d65373ab9f3 https://www.encodeproject.org/files/ENCFF129FEH/@@download/ENCFF129FEH.bigWig released s3://encode-public/2016/02/03/e3e2e66b-8e79-4c27-ad29-75d8a0d912d2/ENCFF129FEH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF841RMN fastq fastq reads ENCSR481SJM Control ChIP-seq /human-donors/ENCDO477WED/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 696157851 Bradley Bernstein, Broad 308f2cfeb27ab1c69ea4f493d7d96002 SRA:SRR16814733 https://www.encodeproject.org/files/ENCFF841RMN/@@download/ENCFF841RMN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/1293ec9e-d639-496e-897a-f38f106b46d6/ENCFF841RMN.fastq.gz ENCFF326OPU fastq fastq reads ENCSR481SJM Control ChIP-seq /human-donors/ENCDO477WED/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 703932419 Bradley Bernstein, Broad d8d5811730b2552cc20d0ba8858f3486 SRA:SRR16814734 https://www.encodeproject.org/files/ENCFF326OPU/@@download/ENCFF326OPU.fastq.gz Illumina NextSeq 500 released 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s3://encode-public/2021/08/25/17e4fcae-a505-45da-8951-72c0da0244c2/ENCFF078PTC.fastq.gz ENCFF542SOW bam bam alignments GRCh38 ENCSR481SJM Control ChIP-seq /human-donors/ENCDO477WED/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF123EGR/, /files/ENCFF597MZI/, /files/ENCFF370RTY/, /files/ENCFF326OPU/, /files/ENCFF294NTW/, /files/ENCFF447CYZ/, /files/ENCFF078PTC/, /files/ENCFF841RMN/ 3892120508 ENCODE Processing Pipeline f0c891283f495827f1a0287b691a68b9 https://www.encodeproject.org/files/ENCFF542SOW/@@download/ENCFF542SOW.bam released s3://encode-public/2021/09/15/cfd02fbb-7afc-47a9-a9ec-2124cf2d4179/ENCFF542SOW.bam ENCODE4 v1.8.0 GRCh38 released ENCFF635BNP bam bam unfiltered alignments GRCh38 ENCSR481SJM Control ChIP-seq /human-donors/ENCDO477WED/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF123EGR/, /files/ENCFF597MZI/, /files/ENCFF370RTY/, /files/ENCFF326OPU/, /files/ENCFF294NTW/, /files/ENCFF447CYZ/, /files/ENCFF078PTC/, /files/ENCFF841RMN/ 4886569108 ENCODE Processing Pipeline c82fa0eb097eda6878110ffd271c3fb7 https://www.encodeproject.org/files/ENCFF635BNP/@@download/ENCFF635BNP.bam released s3://encode-public/2021/09/15/84a7fcde-6473-4060-9b7e-92c65099acef/ENCFF635BNP.bam ENCODE4 v1.8.0 GRCh38 released ENCFF000OCL bam bam alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 1425895292 Richard Myers, HAIB 55b003604e07c2166bae4e81c48bbddd https://www.encodeproject.org/files/ENCFF000OCL/@@download/ENCFF000OCL.bam archived s3://encode-public/2012/01/23/719d8348-b223-46dc-858c-2bda7f5b3cfa/ENCFF000OCL.bam Lab custom hg19 archived low read depth, low read length ENCFF000OCM bam bam alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000OCS/ 1463902292 Richard Myers, HAIB 8f95095b58bd99c619f35ddfac54c350 https://www.encodeproject.org/files/ENCFF000OCM/@@download/ENCFF000OCM.bam archived s3://encode-public/2012/01/23/5c230f4b-3265-4bbb-aaac-ed22fcb88b8d/ENCFF000OCM.bam Lab custom hg19 archived low read depth, low read length ENCFF000OCN bam bam alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 4027034812 Richard Myers, HAIB 7afb94dd451be6e3b504f17bb6c483fd https://www.encodeproject.org/files/ENCFF000OCN/@@download/ENCFF000OCN.bam archived s3://encode-public/2012/01/23/25b867c8-b231-467c-b58c-717825ff1bde/ENCFF000OCN.bam Lab custom hg19 archived low read depth, low read length ENCFF000OCQ bam bam alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 2257293860 Richard Myers, HAIB e8ec739e5369d94f165dabf2e0c0ec23 https://www.encodeproject.org/files/ENCFF000OCQ/@@download/ENCFF000OCQ.bam archived s3://encode-public/2012/01/23/49c1f498-876b-44b8-98d6-73f92d605676/ENCFF000OCQ.bam Lab custom hg19 archived low read depth, low read length ENCFF000OCS fastq fastq reads ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 single-ended 1027460557 Richard Myers, HAIB f16ef24c1e770e6958a0313f60e8d931 https://www.encodeproject.org/files/ENCFF000OCS/@@download/ENCFF000OCS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/1507a1e4-b1cf-4dbb-a82e-1a533a6741d3/ENCFF000OCS.fastq.gz low read depth, low read length ENCFF000OCT bigWig bigWig raw signal hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 34212123 Richard Myers, HAIB 5a50b3336e2d4ccdbb129c7e63ceeadc https://www.encodeproject.org/files/ENCFF000OCT/@@download/ENCFF000OCT.bigWig archived s3://encode-public/2012/01/23/a66669f7-d0e7-4821-a315-5aa22bdffc2f/ENCFF000OCT.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000OCU fastq fastq reads ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 1941061267 Richard Myers, HAIB c61354d061ae3f2651ae62b208ca7328 https://www.encodeproject.org/files/ENCFF000OCU/@@download/ENCFF000OCU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/452d4ba5-b4b3-4755-9392-026085720525/ENCFF000OCU.fastq.gz low read depth, low read length ENCFF000OCV bigWig bigWig raw signal hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 23387899 Richard Myers, HAIB 36abc1405146cc993793e7c1aa07884f https://www.encodeproject.org/files/ENCFF000OCV/@@download/ENCFF000OCV.bigWig archived s3://encode-public/2012/01/23/b475259d-0b24-4c86-8bda-7fae6e86d11e/ENCFF000OCV.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000OCW fastq fastq reads ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 2928549213 Richard Myers, HAIB d9496d78bbb8b424424f5a177e46dfef https://www.encodeproject.org/files/ENCFF000OCW/@@download/ENCFF000OCW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/424da38f-104b-441b-896b-4487d0b03098/ENCFF000OCW.fastq.gz low read depth, low read length ENCFF000OCX bigWig bigWig raw signal hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 9201717 Richard Myers, HAIB d550a98726c3fe720d07ab9225e85ec7 https://www.encodeproject.org/files/ENCFF000OCX/@@download/ENCFF000OCX.bigWig archived s3://encode-public/2012/01/23/62f04041-d1b5-420e-98a3-fc708c5826e8/ENCFF000OCX.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000ODB bigWig bigWig raw signal hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 1192877 Richard Myers, HAIB e69c8f5fdca624eaeba3975b356f6e36 https://www.encodeproject.org/files/ENCFF000ODB/@@download/ENCFF000ODB.bigWig archived s3://encode-public/2012/01/23/4eac1526-9b17-4c6f-b5aa-b6fe201a634b/ENCFF000ODB.bigWig Lab custom hg19 archived low read depth, low read length ENCFF294FNY bam bam unfiltered alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OCW/, /files/ENCFF643CGH/ 3575730872 ENCODE Processing Pipeline 2b312aa80d16bccdd0090a3cc6704692 https://www.encodeproject.org/files/ENCFF294FNY/@@download/ENCFF294FNY.bam released s3://encode-public/2016/10/26/2f333b8a-6881-4812-85d5-0b2635c0116b/ENCFF294FNY.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF562HPN bam bam alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OCW/, /files/ENCFF643CGH/ 1414040596 ENCODE Processing Pipeline add79983da458d42ea98fa98a948ea55 https://www.encodeproject.org/files/ENCFF562HPN/@@download/ENCFF562HPN.bam released s3://encode-public/2016/10/26/5df60444-7a0b-440f-bc5a-01219708a693/ENCFF562HPN.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF446EKX bam bam unfiltered alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF000OCS/ 1294056557 ENCODE Processing Pipeline 18e7352c36c35a424649aecab335e43d https://www.encodeproject.org/files/ENCFF446EKX/@@download/ENCFF446EKX.bam released s3://encode-public/2016/10/26/de2a3939-7c07-40aa-887e-65e2cae4ad99/ENCFF446EKX.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF248TVY bam bam unfiltered alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000OCU/, /files/ENCFF643CGH/ 2502368921 ENCODE Processing Pipeline 5ecabb5ca24f271d9fcc88ce0b0abea8 https://www.encodeproject.org/files/ENCFF248TVY/@@download/ENCFF248TVY.bam released s3://encode-public/2016/10/26/9cfc9428-b949-4398-b844-fb705420ba06/ENCFF248TVY.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF100EIH bam bam alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF000OCS/ 625969477 ENCODE Processing Pipeline 7159e6bb24a26c0287c8c1e38ce17741 https://www.encodeproject.org/files/ENCFF100EIH/@@download/ENCFF100EIH.bam released s3://encode-public/2016/10/26/4d90fea5-f64b-4b17-bfea-7097d032cff9/ENCFF100EIH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF438FFV bam bam alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000OCU/, /files/ENCFF643CGH/ 1232338922 ENCODE Processing Pipeline b73949a4e4533af414ed4337f68212c0 https://www.encodeproject.org/files/ENCFF438FFV/@@download/ENCFF438FFV.bam released s3://encode-public/2016/10/26/111373cd-cd8e-4c81-804f-5e7d95dd2895/ENCFF438FFV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF379YGC bam bam unfiltered alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000OCU/, /files/ENCFF110MCL/ 2488874582 ENCODE Processing Pipeline ea90bed24dd706ec20fff1bcfafc75a7 https://www.encodeproject.org/files/ENCFF379YGC/@@download/ENCFF379YGC.bam released s3://encode-public/2020/10/28/1f18d361-47a8-4de5-ad14-3f2d4864893a/ENCFF379YGC.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF032WUR bam bam alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF000OCS/ 625621911 ENCODE Processing Pipeline efb00e43b04977c52adb56074709d15a https://www.encodeproject.org/files/ENCFF032WUR/@@download/ENCFF032WUR.bam released s3://encode-public/2017/06/20/450a242f-85fb-42af-ae65-f2aa8a91568f/ENCFF032WUR.bam ENCODE3 hg19 archived low read depth, low read length ENCFF958RTR bam bam alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OCW/, /files/ENCFF807MUK/ 1408063248 ENCODE Processing Pipeline 0df241a9e250daf046a47240d6279f7c https://www.encodeproject.org/files/ENCFF958RTR/@@download/ENCFF958RTR.bam released s3://encode-public/2017/06/20/7dc479b5-619f-4653-8bff-5eeb2a96e4e1/ENCFF958RTR.bam ENCODE3 hg19 archived low read depth, low read length ENCFF091HSQ bam bam unfiltered alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF000OCS/ 1289791086 ENCODE Processing Pipeline aa13e7cdb30dd530964d975bc3d8c086 https://www.encodeproject.org/files/ENCFF091HSQ/@@download/ENCFF091HSQ.bam released s3://encode-public/2017/06/20/c56c8910-ca7f-4a4f-8a79-e1d720e8215a/ENCFF091HSQ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF860YRZ bam bam unfiltered alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000OCU/, /files/ENCFF807MUK/ 2491984775 ENCODE Processing Pipeline ba347f8d046bc60dc12656d3d0986fff https://www.encodeproject.org/files/ENCFF860YRZ/@@download/ENCFF860YRZ.bam released s3://encode-public/2017/06/20/e2330a74-c0f4-4ba4-83d4-e4fcb83fcb8a/ENCFF860YRZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF837IOW bam bam alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000OCU/, /files/ENCFF807MUK/ 1226669130 ENCODE Processing Pipeline 64a764297bb57277beef125de5982b3b https://www.encodeproject.org/files/ENCFF837IOW/@@download/ENCFF837IOW.bam released s3://encode-public/2017/06/20/369805c4-d667-423e-9af5-cea77ad9b9e5/ENCFF837IOW.bam ENCODE3 hg19 archived low read depth, low read length ENCFF310AOA bam bam unfiltered alignments hg19 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OCW/, /files/ENCFF807MUK/ 3562642723 ENCODE Processing Pipeline 2705f23ac8bfe139ae0c4d87b23e5709 https://www.encodeproject.org/files/ENCFF310AOA/@@download/ENCFF310AOA.bam released s3://encode-public/2017/06/20/6926c02c-d121-4044-b1bb-6536c8547fb6/ENCFF310AOA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF745UOD bam bam unfiltered alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OCW/, /files/ENCFF110MCL/ 3589348559 ENCODE Processing Pipeline d3eaedb0d26fbd0e6ebb65a093af7c32 https://www.encodeproject.org/files/ENCFF745UOD/@@download/ENCFF745UOD.bam released s3://encode-public/2020/10/28/73897108-9cdd-4baf-82a6-b6b0c5efe3b6/ENCFF745UOD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF882OBA bam bam alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000OCS/ 685617923 ENCODE Processing Pipeline d267f6bbb07c689919a9ab55fda4a192 https://www.encodeproject.org/files/ENCFF882OBA/@@download/ENCFF882OBA.bam released s3://encode-public/2020/10/28/475b865e-c9e0-4086-8b54-919b916b54f0/ENCFF882OBA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF070THX bam bam unfiltered alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000OCS/ 1276421974 ENCODE Processing Pipeline e5c1046a1374f7aca9d9eff2089b665c https://www.encodeproject.org/files/ENCFF070THX/@@download/ENCFF070THX.bam released s3://encode-public/2020/10/28/d30b4ffb-29cd-4352-ba70-26818e936d11/ENCFF070THX.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF075XYL bam bam alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OCW/, /files/ENCFF110MCL/ 1558327631 ENCODE Processing Pipeline e8fe2dae49b3def4b0410a8c5c94c3c4 https://www.encodeproject.org/files/ENCFF075XYL/@@download/ENCFF075XYL.bam released s3://encode-public/2020/10/28/0e6b702c-0bf2-48d8-9184-a8400445a953/ENCFF075XYL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF519KIS bam bam alignments GRCh38 ENCSR000BGH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000OCU/, /files/ENCFF110MCL/ 1358131022 ENCODE Processing Pipeline f51b941487dd1c919603ce73d40645c3 https://www.encodeproject.org/files/ENCFF519KIS/@@download/ENCFF519KIS.bam released s3://encode-public/2020/10/28/ba82b24a-f860-4ba3-a506-65f1c799a9a3/ENCFF519KIS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001HIG bam bam alignments hg19 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF001HIR/ 894758529 John Stamatoyannopoulos, UW 9aaa7fd5eb1c2368ce237f30d25886cd https://www.encodeproject.org/files/ENCFF001HIG/@@download/ENCFF001HIG.bam archived s3://encode-public/2011/06/25/92602a18-9556-4e00-8541-43b8f51bd3af/ENCFF001HIG.bam Lab custom hg19 archived low read length ENCFF001HIH bigWig bigWig raw signal hg19 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 /files/ENCFF001HIG/ 183112717 John Stamatoyannopoulos, UW 92311ba1418c9e406ffe16a0da9262d2 https://www.encodeproject.org/files/ENCFF001HIH/@@download/ENCFF001HIH.bigWig archived s3://encode-public/2011/06/25/c8badc87-d7ca-4a06-9b05-5e207048a179/ENCFF001HIH.bigWig Lab custom hg19 archived low read length ENCFF001HIR fastq fastq reads ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 single-ended 980832127 John Stamatoyannopoulos, UW 647184ce010333879bda47b9e3d57ea9 https://www.encodeproject.org/files/ENCFF001HIR/@@download/ENCFF001HIR.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/f9782064-830c-4c77-be35-b28075ff0188/ENCFF001HIR.fastq.gz low read length ENCFF663QBU bam bam unfiltered alignments GRCh38 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HIR/ 1201010850 ENCODE Processing Pipeline 97280bfbf69cac9db6619008a33523e8 https://www.encodeproject.org/files/ENCFF663QBU/@@download/ENCFF663QBU.bam released s3://encode-public/2016/08/09/abe18501-ddd6-4e24-938b-9adef398c302/ENCFF663QBU.bam ENCODE3 GRCh38 archived low read length ENCFF331JTO bam bam alignments GRCh38 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HIR/ 816704688 ENCODE Processing Pipeline 210f1c9f04e866a23689707605f6c732 https://www.encodeproject.org/files/ENCFF331JTO/@@download/ENCFF331JTO.bam released s3://encode-public/2016/08/09/e1e971a4-1e6e-4f8d-9f3f-3e9131136909/ENCFF331JTO.bam ENCODE3 GRCh38 archived low read length ENCFF962KKN bam bam unfiltered alignments hg19 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HIR/ 1197372185 ENCODE Processing Pipeline 5ebb047e460c54d0fce420664f3f450f https://www.encodeproject.org/files/ENCFF962KKN/@@download/ENCFF962KKN.bam released s3://encode-public/2016/11/13/dccd4a9d-96a8-4846-a8ee-3ce0c7bf7496/ENCFF962KKN.bam ENCODE3 hg19 archived low read length ENCFF164EAM bam bam alignments hg19 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HIR/ 817063282 ENCODE Processing Pipeline 25f0ce701d7e756f15f33da3f6981b18 https://www.encodeproject.org/files/ENCFF164EAM/@@download/ENCFF164EAM.bam released s3://encode-public/2016/11/13/beabfad1-45ef-4e6b-ba03-af23ff60f9b0/ENCFF164EAM.bam ENCODE3 hg19 archived low read length ENCFF293ETI bam bam alignments GRCh38 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF001HIR/, /files/ENCFF110MCL/ 902520044 ENCODE Processing Pipeline e4b4554091b242cf1b71411269fe9aa5 https://www.encodeproject.org/files/ENCFF293ETI/@@download/ENCFF293ETI.bam released s3://encode-public/2020/09/03/25547a11-c632-4a85-b84f-d022b227ddaf/ENCFF293ETI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF123IUD bam bam unfiltered alignments GRCh38 ENCSR000DSA Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0010021 cardiac myoblast in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 9 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF001HIR/, /files/ENCFF110MCL/ 1172091954 ENCODE Processing Pipeline d99ba7e9d7934db1f3df34179fb389ad https://www.encodeproject.org/files/ENCFF123IUD/@@download/ENCFF123IUD.bam released s3://encode-public/2020/09/03/2d37ee36-587a-4db3-bf2b-66354f9e74d5/ENCFF123IUD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF468GMR fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 507566879 Bradley Bernstein, Broad 222bcec6ede5733e40e8018fcc35b6fa SRA:SRR16814961 https://www.encodeproject.org/files/ENCFF468GMR/@@download/ENCFF468GMR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/00750eca-c07f-4858-a66f-10219715e4d3/ENCFF468GMR.fastq.gz ENCFF297GSA fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 530957374 Bradley Bernstein, Broad 8afa1799e8d3bb416a3ed61ee107ceba SRA:SRR16814957 https://www.encodeproject.org/files/ENCFF297GSA/@@download/ENCFF297GSA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/84208ebe-0c3f-4cd6-b305-5b8d559f5b97/ENCFF297GSA.fastq.gz ENCFF494AFP fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 504752266 Bradley Bernstein, Broad 6e3c1496851db82cf23c05650c5bc1d3 SRA:SRR16814962 https://www.encodeproject.org/files/ENCFF494AFP/@@download/ENCFF494AFP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/0191662a-5222-432b-b65e-9d7b3dd9eccb/ENCFF494AFP.fastq.gz ENCFF629CFG fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 512510442 Bradley Bernstein, Broad b6b77ec087daf15b63e0f4509fceffdb SRA:SRR16814958 https://www.encodeproject.org/files/ENCFF629CFG/@@download/ENCFF629CFG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/b568b686-e0da-483f-8f06-039eeaf8c747/ENCFF629CFG.fastq.gz ENCFF337SFT fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 517906765 Bradley Bernstein, Broad 5d5dc237545bd22b2e343596d21df2a1 SRA:SRR16814963 https://www.encodeproject.org/files/ENCFF337SFT/@@download/ENCFF337SFT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/6caa78fc-35df-4536-b8c9-3bd76f8a18af/ENCFF337SFT.fastq.gz ENCFF644DRL fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 514702443 Bradley Bernstein, Broad e000d16f5f4bc7f7ec40e4d2277e2469 SRA:SRR16814959 https://www.encodeproject.org/files/ENCFF644DRL/@@download/ENCFF644DRL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e90651b8-96ac-4884-a991-23dc2c4cb5df/ENCFF644DRL.fastq.gz ENCFF742ETU fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 524891672 Bradley Bernstein, Broad 251efdf21a48a78454ec815210663e11 SRA:SRR16814964 https://www.encodeproject.org/files/ENCFF742ETU/@@download/ENCFF742ETU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/b7196372-243d-4b01-97d0-3b0c8426ed4d/ENCFF742ETU.fastq.gz ENCFF517SDH fastq fastq reads ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 524813722 Bradley Bernstein, Broad 51725180536342994e9881be3120bba7 SRA:SRR16814960 https://www.encodeproject.org/files/ENCFF517SDH/@@download/ENCFF517SDH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/9788f40a-0256-4807-ae97-1b1b4afb5b3c/ENCFF517SDH.fastq.gz ENCFF979AOG bam bam unfiltered alignments GRCh38 ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF742ETU/, /files/ENCFF629CFG/, /files/ENCFF110MCL/, /files/ENCFF337SFT/, /files/ENCFF517SDH/, /files/ENCFF644DRL/, /files/ENCFF468GMR/, /files/ENCFF494AFP/, /files/ENCFF297GSA/ 3971961788 ENCODE Processing Pipeline 5755b2232dfa9db082e61bfcdd479814 https://www.encodeproject.org/files/ENCFF979AOG/@@download/ENCFF979AOG.bam released s3://encode-public/2021/09/14/10305618-4104-41cd-83d4-f378a8fbe2fa/ENCFF979AOG.bam ENCODE4 v1.8.0 GRCh38 released ENCFF727PVC bam bam alignments GRCh38 ENCSR898WPF Control ChIP-seq /human-donors/ENCDO926KEV/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF742ETU/, /files/ENCFF629CFG/, /files/ENCFF110MCL/, /files/ENCFF337SFT/, /files/ENCFF517SDH/, /files/ENCFF644DRL/, /files/ENCFF468GMR/, /files/ENCFF494AFP/, /files/ENCFF297GSA/ 3249358467 ENCODE Processing Pipeline ab42f1bb1e2c7c620630ad479a69d8dd https://www.encodeproject.org/files/ENCFF727PVC/@@download/ENCFF727PVC.bam released s3://encode-public/2021/09/14/0354b836-fe0f-4475-a7e3-bb8d92fe6e14/ENCFF727PVC.bam ENCODE4 v1.8.0 GRCh38 released ENCFF772EDO tagAlign tagAlign alignments hg19 ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF197MRK/ 230284175 Anshul Kundaje, Stanford bb99df470a5d0d7616632370a0206e57 https://www.encodeproject.org/files/ENCFF772EDO/@@download/ENCFF772EDO.tagAlign.gz archived s3://encode-public/2016/05/02/55dc3786-3a12-4554-8d32-d5d5de50b367/ENCFF772EDO.tagAlign.gz Lab custom hg19 archived low read length ENCFF197MRK fastq fastq reads ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1738628550 Zhiping Weng, UMass 3c4b4465382f9585b704167a6cb9d790 SRA:SRR1066993 https://www.encodeproject.org/files/ENCFF197MRK/@@download/ENCFF197MRK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/0f67623a-a7b4-4b08-b602-df84e2eccb14/ENCFF197MRK.fastq.gz low read length ENCFF932EFO bam bam alignments GRCh38 ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF197MRK/, /files/ENCFF110MCL/ 1548518129 ENCODE Processing Pipeline 1ced0a272fa9afd45b2529255c960ef4 https://www.encodeproject.org/files/ENCFF932EFO/@@download/ENCFF932EFO.bam released s3://encode-public/2020/10/08/07d0607f-1e01-4532-a89c-761df85b384d/ENCFF932EFO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF395SRZ bam bam unfiltered alignments hg19 ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF197MRK/ 1992726827 ENCODE Processing Pipeline a9439c47f38b211748285e6d5b23f6fb https://www.encodeproject.org/files/ENCFF395SRZ/@@download/ENCFF395SRZ.bam released s3://encode-public/2016/12/19/57faf40f-16b9-44c9-be2e-5df0b596e0e0/ENCFF395SRZ.bam ENCODE3 hg19 archived low read length ENCFF872FMF bam bam unfiltered alignments GRCh38 ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF197MRK/ 2002291746 ENCODE Processing Pipeline ce0dbc9558b914c8d858979edb1483cd https://www.encodeproject.org/files/ENCFF872FMF/@@download/ENCFF872FMF.bam released s3://encode-public/2016/12/19/35300f97-5cf4-42ec-8123-3918284a8804/ENCFF872FMF.bam ENCODE3 GRCh38 archived low read length ENCFF734RCU bam bam alignments hg19 ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF197MRK/ 1429602651 ENCODE Processing Pipeline 3945215378b2621013610fef067d5960 https://www.encodeproject.org/files/ENCFF734RCU/@@download/ENCFF734RCU.bam released s3://encode-public/2016/12/19/6cc5201b-2c5c-4f1b-a8f8-a3cfb701d359/ENCFF734RCU.bam ENCODE3 hg19 archived low read length ENCFF608MUE bam bam alignments GRCh38 ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF197MRK/ 1429113659 ENCODE Processing Pipeline b1ba71382c31da35aac8286492a8c2bc https://www.encodeproject.org/files/ENCFF608MUE/@@download/ENCFF608MUE.bam released s3://encode-public/2016/12/19/e7220012-9ae0-40da-96da-8287c562ad73/ENCFF608MUE.bam ENCODE3 GRCh38 archived low read length ENCFF915SDE bam bam unfiltered alignments GRCh38 ENCSR534CZJ Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF197MRK/, /files/ENCFF110MCL/ 1956995676 ENCODE Processing Pipeline f5d34b0ee03835a17c23214b2fcb7c0d https://www.encodeproject.org/files/ENCFF915SDE/@@download/ENCFF915SDE.bam released s3://encode-public/2020/10/08/2655a629-31f4-4086-95a3-db6b9e74ae86/ENCFF915SDE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001NUB bigWig bigWig signal mm9 ENCSR000EUF Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 /files/ENCFF001NUC/ 228964669 Michael Snyder, Stanford 4056b997280b27541abc367dd46c5dbd https://www.encodeproject.org/files/ENCFF001NUB/@@download/ENCFF001NUB.bigWig archived s3://encode-public/2012/08/01/aaca8450-7710-4809-ab58-ae70d59cc8db/ENCFF001NUB.bigWig Lab custom mm9 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF001NUC bam bam alignments mm9 ENCSR000EUF Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 27 /files/ENCFF001NUK/ 522475665 Michael Snyder, Stanford 2211e6172e7d69dcae0dee5e46081028 https://www.encodeproject.org/files/ENCFF001NUC/@@download/ENCFF001NUC.bam archived s3://encode-public/2012/08/01/1e5c411b-4fe1-40bf-8966-aeb2282ed141/ENCFF001NUC.bam Lab custom mm9 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF001NUK fastq fastq reads ENCSR000EUF Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 single-ended 1667838826 Michael Snyder, Stanford 6821267e1e67c2fe4b731a1ae451ae1b https://www.encodeproject.org/files/ENCFF001NUK/@@download/ENCFF001NUK.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/6684b898-6c5d-4b75-8658-4a20ce8559d6/ENCFF001NUK.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF399IPF bam bam unfiltered alignments mm10 ENCSR000EUF Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NUK/ 1884787248 ENCODE Processing Pipeline a39266f74273299d3a5ff483a0642d69 https://www.encodeproject.org/files/ENCFF399IPF/@@download/ENCFF399IPF.bam released s3://encode-public/2016/10/26/b1978496-c91d-4d96-987e-78ba4e81cea7/ENCFF399IPF.bam ENCODE3 mm10 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF017EBX bam bam alignments mm10 ENCSR000EUF Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NUK/ 900446655 ENCODE Processing Pipeline 90765d4081048ba93d242e4c11a3d9cc https://www.encodeproject.org/files/ENCFF017EBX/@@download/ENCFF017EBX.bam released s3://encode-public/2016/10/26/c357a274-9c6c-4e1c-adbf-247589d53025/ENCFF017EBX.bam ENCODE3 mm10 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF676BZA bam bam unfiltered alignments mm10 ENCSR000EUF Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF001NUK/, /files/ENCFF309GLL/ 1862705538 ENCODE Processing Pipeline 2c2cd5110bba5fec5475ff62c7ec3341 https://www.encodeproject.org/files/ENCFF676BZA/@@download/ENCFF676BZA.bam released s3://encode-public/2020/11/06/89ca2751-07fe-448d-911c-19219611c6fd/ENCFF676BZA.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF412IAL bam bam alignments mm10 ENCSR000EUF Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF001NUK/, /files/ENCFF309GLL/ 955111873 ENCODE Processing Pipeline fecf8b3014486d10a395f1faadc13f88 https://www.encodeproject.org/files/ENCFF412IAL/@@download/ENCFF412IAL.bam released s3://encode-public/2020/11/06/338e4fca-de6f-4e96-8be0-6529ef0f5069/ENCFF412IAL.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF390DPK bam bam unfiltered alignments hg19 ENCSR896JFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 5 5_1 50 /files/ENCFF001RVQ/, /files/ENCFF807MUK/ 3353817008 ENCODE Processing Pipeline a923220f7237ce40eda042aa9c02f2d3 https://www.encodeproject.org/files/ENCFF390DPK/@@download/ENCFF390DPK.bam released s3://encode-public/2018/02/21/73be31ba-8d1b-441d-ad83-7b3ceb03c5d0/ENCFF390DPK.bam ENCODE3 hg19 archived ENCFF001RVQ fastq fastq reads ENCSR896JFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 5 5_1 50 single-ended 3211284517 Richard Myers, HAIB d9dca34c9f58d84cb51b001e93d05df2 SRA:SRR5339514 https://www.encodeproject.org/files/ENCFF001RVQ/@@download/ENCFF001RVQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2013/11/01/642bea87-aa28-4400-a16b-a953c3a9ac13/ENCFF001RVQ.fastq.gz ENCFF747SPK bam bam alignments hg19 ENCSR896JFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 5 5_1 50 /files/ENCFF001RVQ/, /files/ENCFF807MUK/ 2327875410 ENCODE Processing Pipeline 2dd7f3e1e4f52dd8bb784f1dd7047347 https://www.encodeproject.org/files/ENCFF747SPK/@@download/ENCFF747SPK.bam released s3://encode-public/2015/10/28/b71410ed-fbe2-42cc-b236-38071dbe573b/ENCFF747SPK.bam ENCODE3 hg19 archived ENCFF675HPK bam bam unfiltered alignments GRCh38 ENCSR896JFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 5 5_1 50 /files/ENCFF001RVQ/, /files/ENCFF643CGH/ 3360363477 ENCODE Processing Pipeline 1d9a2112940b374db5d04c8e5c21d458 https://www.encodeproject.org/files/ENCFF675HPK/@@download/ENCFF675HPK.bam released s3://encode-public/2016/05/06/a4b39368-f6ea-4c87-bbe4-ee955e8efabe/ENCFF675HPK.bam ENCODE3 GRCh38 archived ENCFF505ZUJ bam bam alignments GRCh38 ENCSR896JFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 5 5_1 50 /files/ENCFF001RVQ/, /files/ENCFF643CGH/ 2327385950 ENCODE Processing Pipeline f5dfdb908d606d6fd702ce074ab77796 https://www.encodeproject.org/files/ENCFF505ZUJ/@@download/ENCFF505ZUJ.bam released s3://encode-public/2016/05/06/cde4d658-2f97-4d43-8d9f-4763e56c5d2e/ENCFF505ZUJ.bam ENCODE3 GRCh38 archived ENCFF679MNM bam bam unfiltered alignments GRCh38 ENCSR896JFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 5 5_1 50 /files/ENCFF110MCL/, /files/ENCFF001RVQ/ 3357480014 ENCODE Processing Pipeline 35d510ac6e657897b6ca284cd1115361 https://www.encodeproject.org/files/ENCFF679MNM/@@download/ENCFF679MNM.bam released s3://encode-public/2020/06/06/9efee052-680c-4496-b142-25a8ca25e5da/ENCFF679MNM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF060DGR bam bam alignments GRCh38 ENCSR896JFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 5 5_1 50 /files/ENCFF110MCL/, /files/ENCFF001RVQ/ 2449874218 ENCODE Processing Pipeline 85b75c7badd34575271f5d71b83e4d2b https://www.encodeproject.org/files/ENCFF060DGR/@@download/ENCFF060DGR.bam released s3://encode-public/2020/06/06/6c66ebaa-855b-450d-aac3-2e24e60114a5/ENCFF060DGR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF946PKI fastq fastq reads ENCSR283BPT Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1401158452 Zhiping Weng, UMass 607c87a407e1830481118faf19e16209 SRA:SRR1067508 https://www.encodeproject.org/files/ENCFF946PKI/@@download/ENCFF946PKI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/22/46da3f9c-3804-4950-a405-ae765bf822cb/ENCFF946PKI.fastq.gz low read length ENCFF772UAR bam bam unfiltered alignments hg19 ENCSR283BPT Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF946PKI/ 1632285082 ENCODE Processing Pipeline dd1ee99614085c1c43bd4ae6038cdbe0 https://www.encodeproject.org/files/ENCFF772UAR/@@download/ENCFF772UAR.bam released s3://encode-public/2016/12/19/14978f11-23d9-4bae-9fc0-a4b00c949e52/ENCFF772UAR.bam ENCODE3 hg19 archived low read length ENCFF228WDT bam bam unfiltered alignments GRCh38 ENCSR283BPT Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF946PKI/ 1637852029 ENCODE Processing Pipeline 9159df859f733ccf9424dac9e0538f34 https://www.encodeproject.org/files/ENCFF228WDT/@@download/ENCFF228WDT.bam released s3://encode-public/2016/12/19/0ccb3349-c445-45db-a7e8-838af7cd0327/ENCFF228WDT.bam ENCODE3 GRCh38 archived low read length ENCFF607JHY bam bam alignments hg19 ENCSR283BPT Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF946PKI/ 1243239041 ENCODE Processing Pipeline 22c255f2a7237f8bcb2ba14fe583ba6b https://www.encodeproject.org/files/ENCFF607JHY/@@download/ENCFF607JHY.bam released s3://encode-public/2016/12/19/d3c44fcf-3120-45bd-be1e-8a9984ea896e/ENCFF607JHY.bam ENCODE3 hg19 archived low read length ENCFF465RHU bam bam alignments GRCh38 ENCSR283BPT Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF946PKI/ 1240999797 ENCODE Processing Pipeline da0183f2fbfd1d077781037d1f745d4a https://www.encodeproject.org/files/ENCFF465RHU/@@download/ENCFF465RHU.bam released s3://encode-public/2016/12/19/4235fed2-8cc7-471f-a968-271d0db723d0/ENCFF465RHU.bam ENCODE3 GRCh38 archived low read length ENCFF847KBY bam bam alignments GRCh38 ENCSR283BPT Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF946PKI/, /files/ENCFF110MCL/ 1335404646 ENCODE Processing Pipeline 314944f0d1f9ed18c713149993c9c76b https://www.encodeproject.org/files/ENCFF847KBY/@@download/ENCFF847KBY.bam released s3://encode-public/2020/11/13/da491ee8-1b5e-4efc-9a2d-2f923c3c9ad2/ENCFF847KBY.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF744YJD bam bam unfiltered alignments GRCh38 ENCSR283BPT Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF946PKI/, /files/ENCFF110MCL/ 1593381528 ENCODE Processing Pipeline 9dea9ec69c422a1d70f45ef45d6ea7c6 https://www.encodeproject.org/files/ENCFF744YJD/@@download/ENCFF744YJD.bam released s3://encode-public/2020/11/13/1f0be220-d421-47a8-9511-b8f6f26c1035/ENCFF744YJD.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF000SAV bam bam alignments hg19 ENCSR000DMW Control ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 36 1032046726 Vishwanath Iyer, UTA af4ee4b58bdfb92878ee0035295474ca https://www.encodeproject.org/files/ENCFF000SAV/@@download/ENCFF000SAV.bam archived s3://encode-public/2012/07/26/38ce1556-3dad-451e-bd0d-841f0f36c966/ENCFF000SAV.bam Lab custom hg19 archived low read length ENCFF000SAW bigWig bigWig signal hg19 ENCSR000DMW Control ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 4743789254 Vishwanath Iyer, UTA 78db549a6772a68e73403e017650cfbd https://www.encodeproject.org/files/ENCFF000SAW/@@download/ENCFF000SAW.bigWig archived s3://encode-public/2012/07/26/7d5da7c4-57b2-470e-930a-54e45edf272b/ENCFF000SAW.bigWig Lab custom hg19 archived low read length ENCFF000SAZ fastq fastq reads ENCSR000DMW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 890103924 Vishwanath Iyer, UTA a50029660a56274542b1b9bf3a1024bd https://www.encodeproject.org/files/ENCFF000SAZ/@@download/ENCFF000SAZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/1796e861-23a9-4b83-9871-74a28ef7e2e7/ENCFF000SAZ.fastq.gz low read length ENCFF028DNB bam bam unfiltered alignments GRCh38 ENCSR000DMW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000SAZ/ 1286163118 ENCODE Processing Pipeline b171bcb2801c5ea3ebc976b3234a2cd3 https://www.encodeproject.org/files/ENCFF028DNB/@@download/ENCFF028DNB.bam released s3://encode-public/2016/10/26/8ab6370b-e8ea-4cbf-bbce-4079250c48ad/ENCFF028DNB.bam ENCODE3 GRCh38 archived low read length ENCFF946WAV bam bam alignments GRCh38 ENCSR000DMW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000SAZ/ 870959182 ENCODE Processing Pipeline 5964b37076d4a6d87a74a50bcb4a4114 https://www.encodeproject.org/files/ENCFF946WAV/@@download/ENCFF946WAV.bam released s3://encode-public/2016/10/26/b57d5822-f23f-4349-b6fa-deca1bc508b3/ENCFF946WAV.bam ENCODE3 GRCh38 archived low read length ENCFF650VGT bam bam unfiltered alignments hg19 ENCSR000DMW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000SAZ/ 1279496456 ENCODE Processing Pipeline 286dfc6c23a35a1adb37106128e8d817 https://www.encodeproject.org/files/ENCFF650VGT/@@download/ENCFF650VGT.bam released s3://encode-public/2017/04/11/d1b24aa1-4d22-4e77-8286-10b571b12b7f/ENCFF650VGT.bam ENCODE3 hg19 archived low read length ENCFF602XLT bam bam alignments hg19 ENCSR000DMW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000SAZ/ 871336710 ENCODE Processing Pipeline bfbe054ce39a75e78836c9087499c127 https://www.encodeproject.org/files/ENCFF602XLT/@@download/ENCFF602XLT.bam released s3://encode-public/2017/04/11/0c5a89ea-662e-4982-ab68-7e82fb9bf7f9/ENCFF602XLT.bam ENCODE3 hg19 archived low read length ENCFF245AKI bam bam unfiltered alignments GRCh38 ENCSR000DMW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF000SAZ/, /files/ENCFF110MCL/ 1242617344 ENCODE Processing Pipeline a29f81571dfc2cb8235cbeabe01af848 https://www.encodeproject.org/files/ENCFF245AKI/@@download/ENCFF245AKI.bam released s3://encode-public/2020/09/03/aa2e6530-7995-428f-8a5b-9cdfb23eff75/ENCFF245AKI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF797MVP bam bam alignments GRCh38 ENCSR000DMW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF000SAZ/, /files/ENCFF110MCL/ 969395462 ENCODE Processing Pipeline dbf9e9036e510cf0cdd61a18ce150ccc https://www.encodeproject.org/files/ENCFF797MVP/@@download/ENCFF797MVP.bam released s3://encode-public/2020/09/03/8ad46a6c-e219-472e-a14d-8cb726b5761e/ENCFF797MVP.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF854JWI tagAlign tagAlign alignments hg19 ENCSR298OPL Control ChIP-seq CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 257627656 Anshul Kundaje, Stanford b0c54ec89981d1fe8eebbd73c440698d https://www.encodeproject.org/files/ENCFF854JWI/@@download/ENCFF854JWI.tagAlign.gz archived s3://encode-public/2016/03/30/45d6d241-dd95-4767-a485-e53ede6f1577/ENCFF854JWI.tagAlign.gz Lab custom hg19 released inconsistent ontology term ENCFF263EIQ fastq fastq reads ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1770364931 Zhiping Weng, UMass df43daceb29bcd534d4e81cc12646d1e SRA:SRR1067074 https://www.encodeproject.org/files/ENCFF263EIQ/@@download/ENCFF263EIQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/c2b6fe32-49d3-4dfd-a829-a895f61f3a43/ENCFF263EIQ.fastq.gz low read length ENCFF197CBU fastq fastq reads ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1816194915 Zhiping Weng, UMass 018bbaf166142c0dfbb730a38d210389 SRA:SRR1067097 https://www.encodeproject.org/files/ENCFF197CBU/@@download/ENCFF197CBU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/39611f8c-611c-4fc8-8c3b-3915c01144c7/ENCFF197CBU.fastq.gz low read length ENCFF623YOL bam bam unfiltered alignments GRCh38 ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF263EIQ/, /files/ENCFF110MCL/, /files/ENCFF197CBU/ 4096256985 ENCODE Processing Pipeline 0c630e248a47359c19e213dbc713553a https://www.encodeproject.org/files/ENCFF623YOL/@@download/ENCFF623YOL.bam released s3://encode-public/2020/10/08/0d730b9b-757b-495d-8e6d-20896dc0cc87/ENCFF623YOL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF891DLI tagAlign tagAlign alignments hg19 ENCSR141WNW Control ChIP-seq CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 203978503 Anshul Kundaje, Stanford e6fd310dbda0255a2a9ed0a532a1b964 https://www.encodeproject.org/files/ENCFF891DLI/@@download/ENCFF891DLI.tagAlign.gz archived s3://encode-public/2016/02/11/7cb2e0b0-9c60-4678-b7d6-8c0c9e63eb7d/ENCFF891DLI.tagAlign.gz Lab custom hg19 archived low read length ENCFF372JRA bam bam unfiltered alignments hg19 ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF263EIQ/, /files/ENCFF807MUK/, /files/ENCFF197CBU/ 4180045889 ENCODE Processing Pipeline 410ec85a1bc677b43d62190914afad2d https://www.encodeproject.org/files/ENCFF372JRA/@@download/ENCFF372JRA.bam released s3://encode-public/2017/03/21/0d6db4e0-de1c-4358-bd40-3ba049292f2e/ENCFF372JRA.bam ENCODE3 hg19 archived low read length ENCFF985TKB bam bam alignments hg19 ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF263EIQ/, /files/ENCFF807MUK/, /files/ENCFF197CBU/ 2946571442 ENCODE Processing Pipeline 7dae046c5f0a7653dd4010e982985f84 https://www.encodeproject.org/files/ENCFF985TKB/@@download/ENCFF985TKB.bam released s3://encode-public/2017/03/21/8392f12a-b00b-48cd-ba96-bb40cc698a9f/ENCFF985TKB.bam ENCODE3 hg19 archived low read length ENCFF032JTZ bam bam alignments GRCh38 ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF263EIQ/, /files/ENCFF643CGH/, /files/ENCFF197CBU/ 2946130415 ENCODE Processing Pipeline f74e3773e6fe4c460f5885c13437b2eb https://www.encodeproject.org/files/ENCFF032JTZ/@@download/ENCFF032JTZ.bam released s3://encode-public/2017/03/21/ea447be4-92c1-4199-8c68-896d3f2dbb1b/ENCFF032JTZ.bam ENCODE3 GRCh38 archived low read length ENCFF450CXD bam bam unfiltered alignments GRCh38 ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF263EIQ/, /files/ENCFF643CGH/, /files/ENCFF197CBU/ 4209618827 ENCODE Processing Pipeline c057f40375feda470cfe54fd9fb58639 https://www.encodeproject.org/files/ENCFF450CXD/@@download/ENCFF450CXD.bam released s3://encode-public/2017/03/21/b6351e85-b28a-40ed-a79b-37bfc1b14309/ENCFF450CXD.bam ENCODE3 GRCh38 archived low read length ENCFF413GYI bam bam alignments GRCh38 ENCSR141WNW Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000540 neuron in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF263EIQ/, /files/ENCFF110MCL/, /files/ENCFF197CBU/ 3217891689 ENCODE Processing Pipeline 8845b620295229e089a0616448219ee8 https://www.encodeproject.org/files/ENCFF413GYI/@@download/ENCFF413GYI.bam released s3://encode-public/2020/10/08/33ddca98-6185-428b-9d2a-71af3a12e1a0/ENCFF413GYI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF708OPU tagAlign tagAlign alignments hg19 ENCSR193TCX Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/SRR1270461/, /files/SRR1270477/, /files/SRR1270492/ 102915653 Anshul Kundaje, Stanford 410559d1e7aca57fbe939032ae8668da https://www.encodeproject.org/files/ENCFF708OPU/@@download/ENCFF708OPU.tagAlign.gz archived s3://encode-public/2016/03/30/ca1ee8ba-fd5a-4007-888e-c4ae43b74584/ENCFF708OPU.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF550VSZ bam bam redacted unfiltered alignments GRCh38 ENCSR193TCX Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF667YUP/, /files/ENCFF109ANP/, /files/ENCFF643CGH/, /files/ENCFF545BZX/ 225934721 ENCODE Processing Pipeline bbc8cddded89d68c96ec34bd72ea9528 https://www.encodeproject.org/files/ENCFF550VSZ/@@download/ENCFF550VSZ.bam released s3://encode-public/2017/10/16/d0c3c16c-8894-4d4a-aabb-be85afc9fc1b/ENCFF550VSZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF548HKU bam bam redacted alignments GRCh38 ENCSR193TCX Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF667YUP/, /files/ENCFF109ANP/, /files/ENCFF643CGH/, /files/ENCFF545BZX/ 122795875 ENCODE Processing Pipeline d9d98c925d8b1be026b97bb1b921836c https://www.encodeproject.org/files/ENCFF548HKU/@@download/ENCFF548HKU.bam released s3://encode-public/2017/10/16/150b8998-07b5-4f67-9a70-c01ba4b5e7a0/ENCFF548HKU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF489RXL bam bam redacted unfiltered alignments hg19 ENCSR193TCX Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF667YUP/, /files/ENCFF109ANP/, /files/ENCFF807MUK/, /files/ENCFF545BZX/ 136724692 ENCODE Processing Pipeline 33c0699ebe47146b3bb729b685b807d6 https://www.encodeproject.org/files/ENCFF489RXL/@@download/ENCFF489RXL.bam released s3://encode-public/2018/01/20/bad5ecfc-3dc8-4e17-818b-f2a1e7a61796/ENCFF489RXL.bam ENCODE3 hg19 archived low read depth, low read length ENCFF612WCL bam bam redacted alignments hg19 ENCSR193TCX Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF667YUP/, /files/ENCFF109ANP/, /files/ENCFF807MUK/, /files/ENCFF545BZX/ 89514907 ENCODE Processing Pipeline 388847788ca26fbbcdeb6fd064e1a4d0 https://www.encodeproject.org/files/ENCFF612WCL/@@download/ENCFF612WCL.bam released s3://encode-public/2018/01/20/63ea1f1c-e514-495a-9696-7db8998d8db0/ENCFF612WCL.bam ENCODE3 hg19 archived low read depth, low read length ENCFF416VVI bam bam redacted alignments GRCh38 ENCSR193TCX Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF112DSW/, /files/ENCFF973RAV/, /files/ENCFF110MCL/, /files/ENCFF462VKX/ 548107149 ENCODE Processing Pipeline 9d1ba866e6409c712b9e88d8d8242294 https://www.encodeproject.org/files/ENCFF416VVI/@@download/ENCFF416VVI.bam released s3://encode-public/2021/01/28/15992bcb-fbad-485f-b03f-4fc18667ae18/ENCFF416VVI.bam ENCODE4 v1.7.0 GRCh38 released low read depth, low read length ENCFF214OYU tagAlign tagAlign alignments hg19 ENCSR639SUM Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR1270633/ 237302872 Anshul Kundaje, Stanford 94e7f4dbe41add5676c59b714d1b9ccb https://www.encodeproject.org/files/ENCFF214OYU/@@download/ENCFF214OYU.tagAlign.gz archived s3://encode-public/2016/03/30/dff1dc76-2036-455d-8496-1ecc521a5ef7/ENCFF214OYU.tagAlign.gz Lab custom hg19 archived low read length ENCFF803ZRM bam bam redacted unfiltered alignments GRCh38 ENCSR639SUM Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF552OPC/ 402037492 ENCODE Processing Pipeline 23eaf59d7671440411354504e85bc261 https://www.encodeproject.org/files/ENCFF803ZRM/@@download/ENCFF803ZRM.bam released s3://encode-public/2017/10/16/8fcd2b8e-e9f0-4e63-bdd5-bafe5021914e/ENCFF803ZRM.bam ENCODE3 GRCh38 archived low read length ENCFF820UZU bam bam redacted alignments GRCh38 ENCSR639SUM Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF552OPC/ 221744067 ENCODE Processing Pipeline 8ac85172d5fb581b3f70e007f6b7cc46 https://www.encodeproject.org/files/ENCFF820UZU/@@download/ENCFF820UZU.bam released s3://encode-public/2017/10/16/7e806fe4-10e9-419b-b9fe-a65ff69d8108/ENCFF820UZU.bam ENCODE3 GRCh38 archived low read length ENCFF208YPL bam bam redacted alignments hg19 ENCSR639SUM Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF552OPC/ 183928007 ENCODE Processing Pipeline f96f89ab0acf6276dd4d0dc3294ca7aa https://www.encodeproject.org/files/ENCFF208YPL/@@download/ENCFF208YPL.bam released s3://encode-public/2018/01/20/863f3384-53f4-4bf9-9277-1485755ae056/ENCFF208YPL.bam ENCODE3 hg19 archived low read length ENCFF670VZC bam bam redacted unfiltered alignments hg19 ENCSR639SUM Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF552OPC/ 271130033 ENCODE Processing Pipeline 0703c5c2e84ad6261641c7db9dd010c9 https://www.encodeproject.org/files/ENCFF670VZC/@@download/ENCFF670VZC.bam released s3://encode-public/2018/01/20/d0c34686-5bcb-4989-8730-942c79c69135/ENCFF670VZC.bam ENCODE3 hg19 archived low read length ENCFF768GCK bam bam redacted alignments GRCh38 ENCSR639SUM Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF093WPI/, /files/ENCFF110MCL/ 1309041635 ENCODE Processing Pipeline 22d52cb8ebb7d3661a6d518c1408931a https://www.encodeproject.org/files/ENCFF768GCK/@@download/ENCFF768GCK.bam released s3://encode-public/2021/01/28/f3181a4a-baa4-4778-9a8a-e17b64b5b7d4/ENCFF768GCK.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF393EAJ fastq fastq reads ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2485416626 Bing Ren, UCSD 8004e7d4c778b83f60c5215b15ee6137 SRA:SRR3651324 https://www.encodeproject.org/files/ENCFF393EAJ/@@download/ENCFF393EAJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/ebc40d1c-ba88-433d-aaab-cb19cce1611d/ENCFF393EAJ.fastq.gz ENCFF545UQA fastq fastq reads ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2113820910 Bing Ren, UCSD 34df064202bd4c5b1dbddcf149de8a95 SRA:SRR3651326 https://www.encodeproject.org/files/ENCFF545UQA/@@download/ENCFF545UQA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/a3709697-bbf4-436d-83e1-17a6a8a4b2a7/ENCFF545UQA.fastq.gz ENCFF371GCA bam bam alignments mm10-minimal ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF393EAJ/ 2148029176 ENCODE Processing Pipeline 48f8fef962eab4ff59a2d2b7fb1ec9be https://www.encodeproject.org/files/ENCFF371GCA/@@download/ENCFF371GCA.bam archived s3://encode-public/2015/06/24/4d22a9bd-e673-4fca-a5a7-1a1cc4bad1ed/ENCFF371GCA.bam ENCFF627MYB bam bam alignments mm10-minimal ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF545UQA/, /files/ENCFF806TVZ/ 1853469538 ENCODE Processing Pipeline e2926973cb46ead4599123e1c04cdcf6 https://www.encodeproject.org/files/ENCFF627MYB/@@download/ENCFF627MYB.bam archived s3://encode-public/2015/06/24/6b7726df-2f81-413b-a664-85900f7ea12b/ENCFF627MYB.bam ENCFF731RTD fastq fastq reads ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 270130818 Bing Ren, UCSD 76afd909f6f34188b1fd80a2581b3c0b SRA:SRR3651325 https://www.encodeproject.org/files/ENCFF731RTD/@@download/ENCFF731RTD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/d3a04850-cc39-4836-8d91-6fbb8088a10b/ENCFF731RTD.fastq.gz ENCFF972QSB fastq fastq reads ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 370297383 Bing Ren, UCSD c3ccbeeb47b89a849ef1df68a7262f38 SRA:SRR3651327 https://www.encodeproject.org/files/ENCFF972QSB/@@download/ENCFF972QSB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/ea8c19ff-d7f2-40b4-86e5-ae6ef839de6a/ENCFF972QSB.fastq.gz ENCFF490LBM fastq fastq reads ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 190584853 Bing Ren, UCSD a24e00d64117c0618ae719bd3bcf2b8d SRA:SRR3651328 https://www.encodeproject.org/files/ENCFF490LBM/@@download/ENCFF490LBM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/d47ee6b4-f322-4738-bb90-e8ea3cc15d87/ENCFF490LBM.fastq.gz ENCFF060JKD bam bam alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF393EAJ/, /files/ENCFF731RTD/ 2445503245 ENCODE Processing Pipeline 065ecaf8cf4f4eb0a89f06267772df30 https://www.encodeproject.org/files/ENCFF060JKD/@@download/ENCFF060JKD.bam released s3://encode-public/2016/07/18/f8f66bb2-fbff-461a-bc76-8e490ef77267/ENCFF060JKD.bam ENCODE3 mm10 archived ENCFF884PDZ bam bam alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF545UQA/, /files/ENCFF490LBM/, /files/ENCFF018NEO/, /files/ENCFF972QSB/ 2468239767 ENCODE Processing Pipeline 37b900d675dca123aa8a5c692a2daba4 https://www.encodeproject.org/files/ENCFF884PDZ/@@download/ENCFF884PDZ.bam released s3://encode-public/2016/07/18/c218b1b0-27d5-460e-b847-c11d15dd237f/ENCFF884PDZ.bam ENCODE3 mm10 archived ENCFF771ITO bam bam unfiltered alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF393EAJ/, /files/ENCFF731RTD/ 3472726408 ENCODE Processing Pipeline 62ff9631d1940c9f5d933985de80ed99 https://www.encodeproject.org/files/ENCFF771ITO/@@download/ENCFF771ITO.bam released s3://encode-public/2016/07/18/a4558ad4-4255-4fac-854c-02506b6cdc57/ENCFF771ITO.bam ENCODE3 mm10 archived ENCFF440RKT bam bam unfiltered alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF545UQA/, /files/ENCFF490LBM/, /files/ENCFF018NEO/, /files/ENCFF972QSB/ 3471893667 ENCODE Processing Pipeline b94d41d975a4e18aa44bc91ec9d0d649 https://www.encodeproject.org/files/ENCFF440RKT/@@download/ENCFF440RKT.bam released s3://encode-public/2016/07/18/c0c81316-c3bb-42a6-8f9e-8ce7677a0b5e/ENCFF440RKT.bam ENCODE3 mm10 archived ENCFF422VVF bam bam unfiltered alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF731RTD/, /files/ENCFF309GLL/, /files/ENCFF393EAJ/ 3398225800 ENCODE Processing Pipeline 0a7bde6393bb6deeed869550bc9b95fe https://www.encodeproject.org/files/ENCFF422VVF/@@download/ENCFF422VVF.bam released s3://encode-public/2020/10/08/ea8555e6-fe67-4092-b91b-e8c93bbb7089/ENCFF422VVF.bam ENCODE4 v1.5.1 mm10 released ENCFF910BUW bam bam alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF972QSB/, /files/ENCFF490LBM/, /files/ENCFF309GLL/, /files/ENCFF545UQA/ 2540044826 ENCODE Processing Pipeline c491cc326e08aa2e925f598bd48129fb https://www.encodeproject.org/files/ENCFF910BUW/@@download/ENCFF910BUW.bam released s3://encode-public/2020/10/08/92550818-a336-4575-8d00-e76c71b62c1e/ENCFF910BUW.bam ENCODE4 v1.5.1 mm10 released ENCFF738FDE bam bam alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF731RTD/, /files/ENCFF309GLL/, /files/ENCFF393EAJ/ 2533357839 ENCODE Processing Pipeline bb01c70c53a99ef13b4c201a6c3adae2 https://www.encodeproject.org/files/ENCFF738FDE/@@download/ENCFF738FDE.bam released s3://encode-public/2020/10/08/9eb97a30-57ca-4c6c-8684-565f5e17d233/ENCFF738FDE.bam ENCODE4 v1.5.1 mm10 released ENCFF822SIN bam bam unfiltered alignments mm10 ENCSR077QRY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF972QSB/, /files/ENCFF490LBM/, /files/ENCFF309GLL/, /files/ENCFF545UQA/ 3385861350 ENCODE Processing Pipeline 176989747f88f89a1f201c49da3d8339 https://www.encodeproject.org/files/ENCFF822SIN/@@download/ENCFF822SIN.bam released s3://encode-public/2020/10/08/08050c8e-9258-4ef2-a4b2-fddfa116fb8e/ENCFF822SIN.bam ENCODE4 v1.5.1 mm10 released ENCFF035AXH fastq fastq reads ENCSR698YQL Control ChIP-seq /human-donors/ENCDO907CMO/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 325108706 Bradley Bernstein, Broad bc40dbb313643ccfe3b5c9e6176d3905 SRA:SRR14637311 https://www.encodeproject.org/files/ENCFF035AXH/@@download/ENCFF035AXH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/7cd06db0-c8cd-4884-bf39-3b667a95482a/ENCFF035AXH.fastq.gz ENCFF098LGA fastq fastq reads ENCSR698YQL Control ChIP-seq /human-donors/ENCDO907CMO/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 342097610 Bradley Bernstein, Broad 812e70f4bf1efeea8e588a42f2ec15c7 SRA:SRR14637307 https://www.encodeproject.org/files/ENCFF098LGA/@@download/ENCFF098LGA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/6365d186-995e-46c8-9a47-60667ea7814c/ENCFF098LGA.fastq.gz ENCFF438PBH fastq fastq reads ENCSR698YQL Control ChIP-seq /human-donors/ENCDO907CMO/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 327020479 Bradley Bernstein, Broad 123106bff11b3fa3b47f9f4992fd2c91 SRA:SRR14637312 https://www.encodeproject.org/files/ENCFF438PBH/@@download/ENCFF438PBH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/af0dcffa-8eaa-4fb6-83b2-8962014346a9/ENCFF438PBH.fastq.gz ENCFF677MQT fastq fastq reads ENCSR698YQL Control ChIP-seq /human-donors/ENCDO907CMO/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 325192638 Bradley Bernstein, Broad 8c0c3014decacd94f95d20bbc0403fe0 SRA:SRR14637313 https://www.encodeproject.org/files/ENCFF677MQT/@@download/ENCFF677MQT.fastq.gz Illumina NextSeq 500 released 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https://www.encodeproject.org/files/ENCFF592XDE/@@download/ENCFF592XDE.fastq.gz Illumina Genome Analyzer I released s3://encode-public/2016/10/25/5ec65519-4aa3-495f-b916-e499b5c77355/ENCFF592XDE.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF494QQI fastq fastq reads ENCSR333ISV Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': 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https://www.encodeproject.org/files/ENCFF656UOZ/@@download/ENCFF656UOZ.bam released s3://encode-public/2016/10/26/f34e30dc-3568-42d9-998f-c494b995a926/ENCFF656UOZ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF095VYK bam bam alignments ce11 ENCSR333ISV Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription 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Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF424RMB/, /files/ENCFF848BQS/ 10067486 Kevin White, UChicago 11a5a1ff2830f19a233738fc1cbbc91c https://www.encodeproject.org/files/ENCFF833NZZ/@@download/ENCFF833NZZ.bigWig released s3://encode-public/2016/10/26/0bc59f81-eabf-44ac-abb2-6e351abd7b7d/ENCFF833NZZ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF303ULK bigWig bigWig signal of unique reads ce11 ENCSR333ISV Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF656UOZ/, /files/ENCFF095VYK/ 10065186 Kevin White, UChicago ddeba79f5d6b9c95a43cb91e1315bb51 https://www.encodeproject.org/files/ENCFF303ULK/@@download/ENCFF303ULK.bigWig released s3://encode-public/2016/10/26/031bad6d-9a61-4e6a-8eeb-51843e439921/ENCFF303ULK.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF961SAN bigWig bigWig read-depth normalized signal ce11 ENCSR333ISV Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF656UOZ/, /files/ENCFF095VYK/ 10043465 Kevin White, UChicago 83eb4208ce34917ae6c6e924de16e583 https://www.encodeproject.org/files/ENCFF961SAN/@@download/ENCFF961SAN.bigWig released s3://encode-public/2016/10/26/21f9e8e6-95b5-4c18-b75f-f5321229b25d/ENCFF961SAN.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF389ZAU fastq fastq reads ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 100542880 Michael Snyder, Stanford e0b90417410042d50d2ac6d70aea8012 https://www.encodeproject.org/files/ENCFF389ZAU/@@download/ENCFF389ZAU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/dc6feb16-00ec-4e6b-b422-b475d50cf43b/ENCFF389ZAU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF415NTL fastq fastq reads ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 92859521 Michael Snyder, Stanford 8d408b1b97549b6ff3743ddcbed3eec5 https://www.encodeproject.org/files/ENCFF415NTL/@@download/ENCFF415NTL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1a5a0e86-32ba-45b7-9f49-60bbbdd92e70/ENCFF415NTL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF250KUK bam bam alignments ce10 ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF415NTL/, /files/ENCFF389ZAU/, /files/ENCFF987UMF/ 252054930 Kevin White, UChicago f74a5bc6b8976e2d81faa0a1073c8a25 https://www.encodeproject.org/files/ENCFF250KUK/@@download/ENCFF250KUK.bam released s3://encode-public/2016/10/18/41587e77-5ee2-45d9-98c1-b0cbfd31c28b/ENCFF250KUK.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF744AWZ bam bam alignments ce11 ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF415NTL/, /files/ENCFF389ZAU/, /files/ENCFF586MOL/ 252329747 Kevin White, UChicago 333342f457d7b487a6dad05ba10e81cb https://www.encodeproject.org/files/ENCFF744AWZ/@@download/ENCFF744AWZ.bam released s3://encode-public/2016/10/18/574d1d64-f0f1-4c8e-8b98-289a0551bf7f/ENCFF744AWZ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF041DMS bigWig bigWig read-depth normalized signal ce10 ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF250KUK/ 10054791 Kevin White, UChicago 644c5006033d2fe5f60307fa8b83b075 https://www.encodeproject.org/files/ENCFF041DMS/@@download/ENCFF041DMS.bigWig released s3://encode-public/2016/10/20/3036e0ea-d46e-4ff5-ad21-744530a98923/ENCFF041DMS.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF927WMB bigWig bigWig signal of unique reads ce10 ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF250KUK/ 10038774 Kevin White, UChicago 2617c81627dd84fdf2a619f78354b455 https://www.encodeproject.org/files/ENCFF927WMB/@@download/ENCFF927WMB.bigWig released s3://encode-public/2016/10/20/34746560-f398-4143-a229-ea4551c01f75/ENCFF927WMB.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF040JZM bigWig bigWig read-depth normalized signal ce11 ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF744AWZ/ 10050109 Kevin White, UChicago f99fe5ed15628d4320ddfad4cb419acb https://www.encodeproject.org/files/ENCFF040JZM/@@download/ENCFF040JZM.bigWig released s3://encode-public/2016/10/21/71da492e-5b1e-45d9-84d2-5112b737ca92/ENCFF040JZM.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF507VKB bigWig bigWig signal of unique reads ce11 ENCSR403WXH Control ChIP-seq /worm-donors/ENCDO007TQF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172435/'], '@type': ['Target', 'Item'], 'name': 'sem-4-celegans', 'label': 'sem-4', '@id': '/targets/sem-4-celegans/', 'title': 'sem-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1c73e18d-0c24-463b-abb7-149ee74c05f4', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF744AWZ/ 10033273 Kevin White, UChicago 10baece12fc0df114c790fc64e54cd03 https://www.encodeproject.org/files/ENCFF507VKB/@@download/ENCFF507VKB.bigWig released s3://encode-public/2016/10/21/d63ca0a1-1601-4426-9892-b89ac34b8241/ENCFF507VKB.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF435KTE bam bam redacted unfiltered alignments GRCh38 ENCSR659WYW Control ChIP-seq /human-donors/ENCDO881IIS/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 75 /files/ENCFF060HIR/, /files/ENCFF643CGH/, /files/ENCFF489RYI/ 660649171 ENCODE Processing Pipeline 87cfcecdbb4d55daf648db51da689e03 https://www.encodeproject.org/files/ENCFF435KTE/@@download/ENCFF435KTE.bam released s3://encode-public/2017/11/09/b5498d67-8253-42fc-b4f1-93559af4ba00/ENCFF435KTE.bam ENCODE3 GRCh38 archived ENCFF647NFS bam bam redacted alignments GRCh38 ENCSR659WYW Control ChIP-seq /human-donors/ENCDO881IIS/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 75 /files/ENCFF060HIR/, /files/ENCFF643CGH/, /files/ENCFF489RYI/ 522836709 ENCODE Processing Pipeline 3adc568bc21807cf195d7f7f68ce6620 https://www.encodeproject.org/files/ENCFF647NFS/@@download/ENCFF647NFS.bam released s3://encode-public/2017/11/09/2575268d-6ddf-4124-b3e9-e95edec0ed8e/ENCFF647NFS.bam ENCODE3 GRCh38 archived ENCFF594OMA bam bam redacted unfiltered alignments hg19 ENCSR659WYW Control ChIP-seq /human-donors/ENCDO881IIS/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 75 /files/ENCFF060HIR/, /files/ENCFF807MUK/, /files/ENCFF489RYI/ 649722469 ENCODE Processing Pipeline 674da13a6345a3ef2d2913bab76ed059 https://www.encodeproject.org/files/ENCFF594OMA/@@download/ENCFF594OMA.bam released s3://encode-public/2018/01/20/0d11f566-becb-49d4-92df-380b706c23bf/ENCFF594OMA.bam ENCODE3 hg19 archived ENCFF124JGU bam bam redacted alignments hg19 ENCSR659WYW Control ChIP-seq /human-donors/ENCDO881IIS/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 75 /files/ENCFF060HIR/, /files/ENCFF807MUK/, /files/ENCFF489RYI/ 522143018 ENCODE Processing Pipeline 428e7a7caf05592c1854a1c5b5546af1 https://www.encodeproject.org/files/ENCFF124JGU/@@download/ENCFF124JGU.bam released s3://encode-public/2018/01/20/a0c40a42-f9c1-4d91-abf3-9a78e9ba8f4a/ENCFF124JGU.bam ENCODE3 hg19 archived ENCFF429XWI bam bam redacted alignments GRCh38 ENCSR659WYW Control ChIP-seq /human-donors/ENCDO881IIS/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 75 /files/ENCFF053YSY/, /files/ENCFF453NAX/, /files/ENCFF110MCL/ 2944308993 ENCODE Processing Pipeline 77cc1fb548cd12cc41777595b868b4dd https://www.encodeproject.org/files/ENCFF429XWI/@@download/ENCFF429XWI.bam released s3://encode-public/2021/01/28/6ae85145-a173-4f1d-9df1-68d71f19bd0b/ENCFF429XWI.bam ENCODE4 v1.7.0 GRCh38 released ENCFF816QXY fastq fastq reads ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 166077325 Michael Snyder, Stanford 9952715db1bc2700260cbef908200fb7 https://www.encodeproject.org/files/ENCFF816QXY/@@download/ENCFF816QXY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2f08680a-2d6e-4134-bae2-c290dab13f00/ENCFF816QXY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF190IML fastq fastq reads ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 169404460 Michael Snyder, Stanford 3b44e116e945097938e6da0d1ad9d3e8 https://www.encodeproject.org/files/ENCFF190IML/@@download/ENCFF190IML.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cc8d52d3-6947-4264-8c5a-7deaca03cfde/ENCFF190IML.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF075TTT bam bam alignments ce10 ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF816QXY/, /files/ENCFF190IML/, /files/ENCFF987UMF/ 404787102 Kevin White, UChicago 2d632f262a1cd56faa8799b8f0aa2609 https://www.encodeproject.org/files/ENCFF075TTT/@@download/ENCFF075TTT.bam released s3://encode-public/2016/10/18/5cee0026-13be-411f-a960-f6f723a710fb/ENCFF075TTT.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF349DWV bam bam alignments ce11 ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF816QXY/, /files/ENCFF190IML/, /files/ENCFF586MOL/ 405124078 Kevin White, UChicago d83c1e099749e93407941311702e3b64 https://www.encodeproject.org/files/ENCFF349DWV/@@download/ENCFF349DWV.bam released s3://encode-public/2016/10/18/aa2741ae-dbaa-40f0-9d9e-094b60a95254/ENCFF349DWV.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF811MMH bigWig bigWig read-depth normalized signal ce10 ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF075TTT/ 10024053 Kevin White, UChicago 65f30c06653b77ce615a971295937c0e https://www.encodeproject.org/files/ENCFF811MMH/@@download/ENCFF811MMH.bigWig released s3://encode-public/2016/10/20/5856beb5-7f85-45a4-9d93-27711d7f3d02/ENCFF811MMH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF168CKB bigWig bigWig signal of unique reads ce10 ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF075TTT/ 10049643 Kevin White, UChicago b3dc98b0006446dd91badcade505cb2b https://www.encodeproject.org/files/ENCFF168CKB/@@download/ENCFF168CKB.bigWig released s3://encode-public/2016/10/20/c141b57d-9941-4137-b955-3f976e099ed8/ENCFF168CKB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF963LJE bigWig bigWig read-depth normalized signal ce11 ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF349DWV/ 10024543 Kevin White, UChicago 1aebf1e99dd62bd74b40abb5dd9c2745 https://www.encodeproject.org/files/ENCFF963LJE/@@download/ENCFF963LJE.bigWig released s3://encode-public/2016/10/20/e0090c7a-81fc-499b-af71-23cd2bfa6bda/ENCFF963LJE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF187ING bigWig bigWig signal of unique reads ce11 ENCSR702LKU Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF349DWV/ 10049729 Kevin White, UChicago 4a1250c116d791ace1d41956a1744674 https://www.encodeproject.org/files/ENCFF187ING/@@download/ENCFF187ING.bigWig released s3://encode-public/2016/10/20/215f0eef-4e76-40d9-b180-f0920fb3fb64/ENCFF187ING.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF729QGG bam bam redacted unfiltered alignments GRCh38 ENCSR857YQI Control ChIP-seq /human-donors/ENCDO620KOS/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF229PVT/, /files/ENCFF643CGH/ 487152199 ENCODE Processing Pipeline c50f62bc61d1f3c79c088a398b3cf6e3 https://www.encodeproject.org/files/ENCFF729QGG/@@download/ENCFF729QGG.bam released s3://encode-public/2018/01/19/15e400ea-bb4b-4128-99e3-7e1eb8525adf/ENCFF729QGG.bam ENCODE3 GRCh38 archived low read length ENCFF226FMX bam bam redacted alignments GRCh38 ENCSR857YQI Control ChIP-seq /human-donors/ENCDO620KOS/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF229PVT/, /files/ENCFF643CGH/ 336116963 ENCODE Processing Pipeline d6427f533980ba20bcf3fa388d529af6 https://www.encodeproject.org/files/ENCFF226FMX/@@download/ENCFF226FMX.bam released s3://encode-public/2018/01/19/2b33f82c-a642-4c04-9fb4-763efd2d32e6/ENCFF226FMX.bam ENCODE3 GRCh38 archived low read length ENCFF279PUN bam bam redacted unfiltered alignments hg19 ENCSR857YQI Control ChIP-seq /human-donors/ENCDO620KOS/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF229PVT/, /files/ENCFF807MUK/ 482212187 ENCODE Processing Pipeline 0896eaef705b914ac38d2154fd5296ad https://www.encodeproject.org/files/ENCFF279PUN/@@download/ENCFF279PUN.bam released s3://encode-public/2018/01/19/e18b7489-8fca-4ee2-b651-50812900f5c4/ENCFF279PUN.bam ENCODE3 hg19 archived low read length ENCFF707OTO bam bam redacted alignments hg19 ENCSR857YQI Control ChIP-seq /human-donors/ENCDO620KOS/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF229PVT/, /files/ENCFF807MUK/ 336124410 ENCODE Processing Pipeline 35dcabb6b71423a46e124b5ec7602d35 https://www.encodeproject.org/files/ENCFF707OTO/@@download/ENCFF707OTO.bam released s3://encode-public/2018/01/19/8c172d1b-c56c-4f48-b89c-aeddc8ab164b/ENCFF707OTO.bam ENCODE3 hg19 archived low read length ENCFF074IDP bam bam redacted alignments GRCh38 ENCSR857YQI Control ChIP-seq /human-donors/ENCDO620KOS/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF229PVT/ 1055963487 ENCODE Processing Pipeline 5ee640be7453fc9b2c5183872fcff4eb https://www.encodeproject.org/files/ENCFF074IDP/@@download/ENCFF074IDP.bam released s3://encode-public/2021/01/27/8521c0f1-55cd-405b-9c0e-06c02abe5d0e/ENCFF074IDP.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF521SIZ fastq fastq reads ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 single-ended 1087206121 Xiang-Dong Fu, UCSD 82df9332b79959d63d4e538ba8107dda SRA:SRR14103695 https://www.encodeproject.org/files/ENCFF521SIZ/@@download/ENCFF521SIZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/0ed167bd-3874-45af-bc34-751e97a8ea46/ENCFF521SIZ.fastq.gz low read length ENCFF448VZC fastq fastq reads ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 single-ended 819222316 Xiang-Dong Fu, UCSD 93c8f403fc70e195a78ff82b247003ef SRA:SRR14103696 https://www.encodeproject.org/files/ENCFF448VZC/@@download/ENCFF448VZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/5f5f7230-45ae-40a1-97f8-638f73e8cb19/ENCFF448VZC.fastq.gz low read length ENCFF800YJW bam bam alignments hg19 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF521SIZ/ 1206739852 ENCODE Processing Pipeline 68de3621a080495ff630666b3d428fda https://www.encodeproject.org/files/ENCFF800YJW/@@download/ENCFF800YJW.bam released s3://encode-public/2015/11/12/5008b4f1-6519-4b7d-8511-0b40de01e601/ENCFF800YJW.bam ENCODE3 hg19 archived low read length ENCFF565UJC bam bam alignments hg19 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF448VZC/ 918570140 ENCODE Processing Pipeline f2829492caca3ed31106be119a93f782 https://www.encodeproject.org/files/ENCFF565UJC/@@download/ENCFF565UJC.bam released s3://encode-public/2015/11/12/2032fc81-1def-4fc9-ac4f-edd15937de23/ENCFF565UJC.bam ENCODE3 hg19 archived low read length ENCFF871OYT bam bam unfiltered alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF448VZC/ 1208161483 ENCODE Processing Pipeline b80c2a4ee2895ef63fdca9aa9108ea8f https://www.encodeproject.org/files/ENCFF871OYT/@@download/ENCFF871OYT.bam released s3://encode-public/2016/05/06/65417313-1f88-4c6b-8fe7-6d70aa0ed279/ENCFF871OYT.bam ENCODE3 GRCh38 archived low read length ENCFF349NCR bam bam alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF448VZC/ 917767938 ENCODE Processing Pipeline 2ca5640f6d1e1367f2071fb8f37d212a https://www.encodeproject.org/files/ENCFF349NCR/@@download/ENCFF349NCR.bam released s3://encode-public/2016/05/06/1aecbe6e-2068-433f-8e47-897c326f8823/ENCFF349NCR.bam ENCODE3 GRCh38 archived low read length ENCFF305WQU bam bam unfiltered alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF521SIZ/ 1598229753 ENCODE Processing Pipeline 82683ebaa6361222cd56a58a72e5a057 https://www.encodeproject.org/files/ENCFF305WQU/@@download/ENCFF305WQU.bam released s3://encode-public/2016/05/06/56eb3826-46ea-4be0-a7b6-4410cb100ce8/ENCFF305WQU.bam ENCODE3 GRCh38 archived low read length ENCFF728ZED bam bam alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF521SIZ/ 1205734703 ENCODE Processing Pipeline 3bcfc1dd81251e17a73686149684f6ee https://www.encodeproject.org/files/ENCFF728ZED/@@download/ENCFF728ZED.bam released s3://encode-public/2016/05/06/fa6fc177-83d3-4294-8188-ed7f2490305e/ENCFF728ZED.bam ENCODE3 GRCh38 archived low read length ENCFF677OCG bam bam unfiltered alignments hg19 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF521SIZ/ 1591522247 ENCODE Processing Pipeline fbb065fda9deb15ff45017e9fdb9b1ec https://www.encodeproject.org/files/ENCFF677OCG/@@download/ENCFF677OCG.bam released s3://encode-public/2018/01/12/025eb88c-b735-48d0-a850-b5eee7d6fe81/ENCFF677OCG.bam ENCODE3 hg19 archived low read length ENCFF002OQK bam bam unfiltered alignments hg19 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF448VZC/ 1203014096 ENCODE Processing Pipeline f206089e95b73d9271a0261e4f070344 https://www.encodeproject.org/files/ENCFF002OQK/@@download/ENCFF002OQK.bam released s3://encode-public/2018/01/12/adfc3685-ddfd-4e01-84ae-24d128899e0f/ENCFF002OQK.bam ENCODE3 hg19 archived low read length ENCFF578CNM bam bam alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF521SIZ/ 1229771589 ENCODE Processing Pipeline fbbccd9e5fde8231622b0866fc4b7742 https://www.encodeproject.org/files/ENCFF578CNM/@@download/ENCFF578CNM.bam released s3://encode-public/2020/10/27/9b75eb6c-69eb-4945-97dc-c32d3ad81435/ENCFF578CNM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF306VBL bam bam unfiltered alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF521SIZ/ 1559879589 ENCODE Processing Pipeline 5076c1bf69f3673e5e5cb48a86b8523e https://www.encodeproject.org/files/ENCFF306VBL/@@download/ENCFF306VBL.bam released s3://encode-public/2020/10/27/ec21d5f2-1d96-4ea8-9d7e-ffc9131dedf1/ENCFF306VBL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF639OSW bam bam unfiltered alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF448VZC/ 1184138005 ENCODE Processing Pipeline a0158b9e92a7e8beec7650d98133f29e https://www.encodeproject.org/files/ENCFF639OSW/@@download/ENCFF639OSW.bam released s3://encode-public/2020/10/27/1821c666-75aa-4915-88b9-44fabb2d792d/ENCFF639OSW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF482QMO bam bam alignments GRCh38 ENCSR775ETD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF448VZC/ 935764359 ENCODE Processing Pipeline 32aef8e2b81d057a99e65a051da3f338 https://www.encodeproject.org/files/ENCFF482QMO/@@download/ENCFF482QMO.bam released s3://encode-public/2020/10/27/2679f26c-39be-4c97-b6b0-8ca9762d7fc7/ENCFF482QMO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF526TGW fastq fastq reads ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 single-ended 1859706486 Xiang-Dong Fu, UCSD f45c44d369a5e16d9fe36db463c39945 SRA:SRR6214172 https://www.encodeproject.org/files/ENCFF526TGW/@@download/ENCFF526TGW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/1865066b-1ec5-4f91-8fd4-934fce31b0df/ENCFF526TGW.fastq.gz low read length ENCFF883CMB fastq fastq reads ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 single-ended 1446471583 Xiang-Dong Fu, UCSD 529a3fc8b7300d7aac47bc629c93df9a SRA:SRR6214173 https://www.encodeproject.org/files/ENCFF883CMB/@@download/ENCFF883CMB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/ae665144-d88b-462b-b25e-6cfefcd3eb1f/ENCFF883CMB.fastq.gz low read length ENCFF951UMF bam bam alignments hg19 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF526TGW/ 1949694872 ENCODE Processing Pipeline a4cd8abd24b416635048618ceee7443e https://www.encodeproject.org/files/ENCFF951UMF/@@download/ENCFF951UMF.bam released s3://encode-public/2015/11/12/a78e2b84-1bfb-44a1-be9a-da0a013ebdb1/ENCFF951UMF.bam ENCODE3 hg19 archived low read length ENCFF580VRU bam bam alignments hg19 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF883CMB/ 1542129647 ENCODE Processing Pipeline bad6a3a6d66bffb564de0d18bb7efcb3 https://www.encodeproject.org/files/ENCFF580VRU/@@download/ENCFF580VRU.bam released s3://encode-public/2015/11/12/3038b76a-3cc3-491d-8db8-084719e38cdf/ENCFF580VRU.bam ENCODE3 hg19 archived low read length ENCFF510GFY bam bam unfiltered alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF883CMB/ 2068643523 ENCODE Processing Pipeline dcad45be900fb499f0dca4939761dba7 https://www.encodeproject.org/files/ENCFF510GFY/@@download/ENCFF510GFY.bam released s3://encode-public/2016/05/06/4d986111-f107-4a3d-adcd-c168712792a6/ENCFF510GFY.bam ENCODE3 GRCh38 archived low read length ENCFF289MCV bam bam unfiltered alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF526TGW/ 2638044932 ENCODE Processing Pipeline 3c8587bbb7d4b09b9a62a0dd2f54fa84 https://www.encodeproject.org/files/ENCFF289MCV/@@download/ENCFF289MCV.bam released s3://encode-public/2016/05/06/6f010441-2e68-405d-9c78-36bf3bf7f7d6/ENCFF289MCV.bam ENCODE3 GRCh38 archived low read length ENCFF659EXP bam bam alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF526TGW/ 1948343315 ENCODE Processing Pipeline b968f5361234ba9c4cb265cb15056522 https://www.encodeproject.org/files/ENCFF659EXP/@@download/ENCFF659EXP.bam released s3://encode-public/2016/05/06/d2e8ad4c-48d9-47ba-ad36-8b2025cff7f6/ENCFF659EXP.bam ENCODE3 GRCh38 archived low read length ENCFF872JOE bam bam alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF883CMB/ 1540939305 ENCODE Processing Pipeline 2b3b3eec5288e120d8c0d4bb892e68cd https://www.encodeproject.org/files/ENCFF872JOE/@@download/ENCFF872JOE.bam released s3://encode-public/2016/05/06/f4dfe567-1edf-4111-a4c5-f5f9608efe7f/ENCFF872JOE.bam ENCODE3 GRCh38 archived low read length ENCFF558MII bam bam unfiltered alignments hg19 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF883CMB/ 2060262981 ENCODE Processing Pipeline 03b1525902cb2f693429cbec871eb3a7 https://www.encodeproject.org/files/ENCFF558MII/@@download/ENCFF558MII.bam released s3://encode-public/2018/01/12/1e070c8e-9d25-4621-a3d1-94d7320bcc11/ENCFF558MII.bam ENCODE3 hg19 archived low read length ENCFF163JPJ bam bam unfiltered alignments hg19 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF526TGW/ 2626802482 ENCODE Processing Pipeline d409d728621cdce0e46ed5867c1db0cd https://www.encodeproject.org/files/ENCFF163JPJ/@@download/ENCFF163JPJ.bam released s3://encode-public/2018/01/12/be01cc81-d6d9-450a-9247-6e80e6cc4ca9/ENCFF163JPJ.bam ENCODE3 hg19 archived low read length ENCFF136DUC bam bam unfiltered alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF883CMB/ 2034568998 ENCODE Processing Pipeline 940679a4e920a2e8f87574838b0c39ff https://www.encodeproject.org/files/ENCFF136DUC/@@download/ENCFF136DUC.bam released s3://encode-public/2020/10/27/a535e7e5-3310-4e7c-93e1-fc0b8ce09e0c/ENCFF136DUC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF194FGZ bam bam unfiltered alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF526TGW/ 2599230896 ENCODE Processing Pipeline e1ef6a7484d4ed6fc3a3388b09cae1f2 https://www.encodeproject.org/files/ENCFF194FGZ/@@download/ENCFF194FGZ.bam released s3://encode-public/2020/10/27/23b34db2-de45-41c7-898c-987745224ccb/ENCFF194FGZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF395UUL bam bam alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF883CMB/ 1602130850 ENCODE Processing Pipeline a75cfbcc706165e09857dcfb67d6d616 https://www.encodeproject.org/files/ENCFF395UUL/@@download/ENCFF395UUL.bam released s3://encode-public/2020/10/27/1eb35f53-b6c1-4a74-a443-96bcab206fa2/ENCFF395UUL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF788XUJ bam bam alignments GRCh38 ENCSR748EXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF526TGW/ 2030819649 ENCODE Processing Pipeline 2a96ab9b2398ae741f08f0d48b973104 https://www.encodeproject.org/files/ENCFF788XUJ/@@download/ENCFF788XUJ.bam released s3://encode-public/2020/10/27/2bfbade7-f2f2-4529-bab2-df9922c65fc0/ENCFF788XUJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF971VAX bam bam redacted unfiltered alignments GRCh38 ENCSR577ACO Control ChIP-seq /human-donors/ENCDO273TST/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF155TVY/, /files/ENCFF643CGH/ 327150931 ENCODE Processing Pipeline cf5f9068d61561aa78b8980c0bf740e1 https://www.encodeproject.org/files/ENCFF971VAX/@@download/ENCFF971VAX.bam released s3://encode-public/2017/11/09/a389980e-d533-4654-8496-e02a2852ab96/ENCFF971VAX.bam ENCODE3 GRCh38 archived ENCFF704GDL bam bam redacted alignments GRCh38 ENCSR577ACO Control ChIP-seq /human-donors/ENCDO273TST/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF155TVY/, /files/ENCFF643CGH/ 255748164 ENCODE Processing Pipeline 926859f64121b9e33f0ec011466edbec https://www.encodeproject.org/files/ENCFF704GDL/@@download/ENCFF704GDL.bam released s3://encode-public/2017/11/09/329f148d-311e-486d-bdfd-22e65ee9a4c2/ENCFF704GDL.bam ENCODE3 GRCh38 archived ENCFF444TSH bam bam redacted alignments hg19 ENCSR577ACO Control ChIP-seq /human-donors/ENCDO273TST/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF155TVY/, /files/ENCFF807MUK/ 255559442 ENCODE Processing Pipeline 0ead603c8ea75e2fbebcfa7d3fc792af https://www.encodeproject.org/files/ENCFF444TSH/@@download/ENCFF444TSH.bam released s3://encode-public/2018/01/20/5a09e0a7-95c8-4935-879f-1013b29d71f9/ENCFF444TSH.bam ENCODE3 hg19 archived ENCFF780ZNY bam bam redacted unfiltered alignments hg19 ENCSR577ACO Control ChIP-seq /human-donors/ENCDO273TST/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF155TVY/, /files/ENCFF807MUK/ 323724225 ENCODE Processing Pipeline cf6a73991ba3c4e0b45c8e06d378c48e https://www.encodeproject.org/files/ENCFF780ZNY/@@download/ENCFF780ZNY.bam released s3://encode-public/2018/01/20/9696790e-5a99-45d1-8230-69429bf397de/ENCFF780ZNY.bam ENCODE3 hg19 archived ENCFF024UXR bam bam redacted alignments GRCh38 ENCSR577ACO Control ChIP-seq /human-donors/ENCDO273TST/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF922SFF/, /files/ENCFF110MCL/ 1496474948 ENCODE Processing Pipeline 98428331c68da8114c907b2350c23f5e https://www.encodeproject.org/files/ENCFF024UXR/@@download/ENCFF024UXR.bam released s3://encode-public/2021/01/28/4906000a-20fe-460c-95eb-69578b2f42c6/ENCFF024UXR.bam ENCODE4 v1.7.0 GRCh38 released ENCFF500JEP tagAlign tagAlign alignments hg19 ENCSR055YMD Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0000305 amnion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172783/ 174860206 Anshul Kundaje, Stanford cdbb0aff971573bfdc9caa8d28ef420b https://www.encodeproject.org/files/ENCFF500JEP/@@download/ENCFF500JEP.tagAlign.gz archived s3://encode-public/2016/02/11/65d39ca5-f0be-4e34-b06f-96ce29a8da2b/ENCFF500JEP.tagAlign.gz Lab custom hg19 archived ENCFF989MMP bam bam redacted unfiltered alignments GRCh38 ENCSR055YMD Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0000305 amnion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF762WLA/ 364469695 ENCODE Processing Pipeline 80db2e41ede95a653f1a1eaba6a26392 https://www.encodeproject.org/files/ENCFF989MMP/@@download/ENCFF989MMP.bam released s3://encode-public/2017/11/09/8f66117e-645c-4bad-ac67-fb22c7ab5b3a/ENCFF989MMP.bam ENCODE3 GRCh38 archived ENCFF454LRX bam bam redacted alignments GRCh38 ENCSR055YMD Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0000305 amnion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF762WLA/ 295812764 ENCODE Processing Pipeline 81ff5e21a56a944f871fe21b90549a1a https://www.encodeproject.org/files/ENCFF454LRX/@@download/ENCFF454LRX.bam released s3://encode-public/2017/11/09/23297974-c12f-4602-849f-8e81050acb04/ENCFF454LRX.bam ENCODE3 GRCh38 archived ENCFF559KRH bam bam redacted unfiltered alignments hg19 ENCSR055YMD Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0000305 amnion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF762WLA/ 358297610 ENCODE Processing Pipeline 0040fba95518e83460e3eac6c48f8295 https://www.encodeproject.org/files/ENCFF559KRH/@@download/ENCFF559KRH.bam released s3://encode-public/2018/01/20/d29687ff-79f8-49f1-b877-3744e29d809c/ENCFF559KRH.bam ENCODE3 hg19 archived ENCFF256TZM bam bam redacted alignments hg19 ENCSR055YMD Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0000305 amnion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF762WLA/ 295402784 ENCODE Processing Pipeline c4515915892134b654de489491c00d7a https://www.encodeproject.org/files/ENCFF256TZM/@@download/ENCFF256TZM.bam released s3://encode-public/2018/01/20/7b93fbca-8876-400b-9fad-cfc4f86b53d5/ENCFF256TZM.bam ENCODE3 hg19 archived ENCFF196AZH bam bam redacted alignments GRCh38 ENCSR055YMD Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0000305 amnion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF525VHA/ 1952044542 ENCODE Processing Pipeline 213ba30c961b2d7ca7681e2fd34252fb https://www.encodeproject.org/files/ENCFF196AZH/@@download/ENCFF196AZH.bam released s3://encode-public/2021/01/28/22b7b95c-d028-4101-99b2-7cc8fe6b984e/ENCFF196AZH.bam ENCODE4 v1.7.0 GRCh38 released ENCFF936VXK tagAlign tagAlign alignments hg19 ENCSR958OEP Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172641/ 109134471 Anshul Kundaje, Stanford a0513db75bf5acf71e9951521712ce84 https://www.encodeproject.org/files/ENCFF936VXK/@@download/ENCFF936VXK.tagAlign.gz archived s3://encode-public/2016/02/11/1284caf8-0028-4165-951b-ec4c0c3d3c91/ENCFF936VXK.tagAlign.gz Lab custom hg19 archived low read depth ENCFF489JNS bam bam redacted unfiltered alignments GRCh38 ENCSR958OEP Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF667LJM/ 247520237 ENCODE Processing Pipeline c78d81a726e353dbef5581ee60ab478b https://www.encodeproject.org/files/ENCFF489JNS/@@download/ENCFF489JNS.bam released s3://encode-public/2017/11/09/72823650-dcbc-4831-811d-e69e185cfd06/ENCFF489JNS.bam ENCODE3 GRCh38 archived low read depth ENCFF818CPT bam bam redacted alignments GRCh38 ENCSR958OEP Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF667LJM/ 197980307 ENCODE Processing Pipeline dfc15e5c21de29f7a360923c0c7a2d68 https://www.encodeproject.org/files/ENCFF818CPT/@@download/ENCFF818CPT.bam released s3://encode-public/2017/11/09/ef843ffd-cc62-4c68-9abe-00765020eb94/ENCFF818CPT.bam ENCODE3 GRCh38 archived low read depth ENCFF800LVB bam bam redacted unfiltered alignments hg19 ENCSR958OEP Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF667LJM/ 243218491 ENCODE Processing Pipeline 4824ded4f3006eb534efd235f39c8262 https://www.encodeproject.org/files/ENCFF800LVB/@@download/ENCFF800LVB.bam released s3://encode-public/2018/01/20/27cc5481-eaaa-449b-a3e6-c52a7ba8fd88/ENCFF800LVB.bam ENCODE3 hg19 archived low read depth ENCFF943OJX bam bam redacted alignments hg19 ENCSR958OEP Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF667LJM/ 197751030 ENCODE Processing Pipeline 8a6ca43972088b0a65f9e7f01c117663 https://www.encodeproject.org/files/ENCFF943OJX/@@download/ENCFF943OJX.bam released s3://encode-public/2018/01/20/eebe0d3a-2062-4c0f-8d2d-99ffd924acf8/ENCFF943OJX.bam ENCODE3 hg19 archived low read depth ENCFF956KOV bam bam redacted alignments GRCh38 ENCSR958OEP Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF338MZH/, /files/ENCFF110MCL/ 1133953650 ENCODE Processing Pipeline 5614325312aba4d0c42c101145d4e551 https://www.encodeproject.org/files/ENCFF956KOV/@@download/ENCFF956KOV.bam released s3://encode-public/2021/01/28/54207fa4-6b41-45ef-a0cf-8bf37893705a/ENCFF956KOV.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF001MRA bam bam alignments mm9 ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRI/ 680790180 Ross Hardison, PennState 819f25c46224a35866b419d0148b5fcc https://www.encodeproject.org/files/ENCFF001MRA/@@download/ENCFF001MRA.bam archived s3://encode-public/2011/11/05/983e3b7e-789c-44db-9f61-c7578df7246b/ENCFF001MRA.bam Lab custom mm9 archived low read length insufficient read depth ENCFF001MRB bigWig bigWig signal mm9 ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 1240960188 Ross Hardison, PennState 3be97192b78c41e9c2f8f16cdee576c7 https://www.encodeproject.org/files/ENCFF001MRB/@@download/ENCFF001MRB.bigWig archived s3://encode-public/2011/11/05/199417cd-e31c-48ea-a6b5-fa1b4c33a79a/ENCFF001MRB.bigWig Lab custom mm9 archived low read length insufficient read depth ENCFF001MRI fastq fastq reads ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 single-ended 549740339 Ross Hardison, PennState a55d36047c4db314b4e01455a54aa8b5 https://www.encodeproject.org/files/ENCFF001MRI/@@download/ENCFF001MRI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/dcc4f68d-da0f-44a1-9bba-61c8eb322ad9/ENCFF001MRI.fastq.gz low read length insufficient read depth ENCFF786JZS bam bam unfiltered alignments mm10-minimal ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRI/ 718273505 J. Michael Cherry, Stanford 61660c99f8b122b06f4b653bb498a5bc https://www.encodeproject.org/files/ENCFF786JZS/@@download/ENCFF786JZS.bam archived s3://encode-public/2015/02/04/87800984-3376-4929-9a02-6a1c9e35db4b/ENCFF786JZS.bam ENCODE3 mm10-minimal archived low read length insufficient read depth ENCFF730TVA bam bam alignments mm10-minimal ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRI/ 526625585 J. Michael Cherry, Stanford 5e74f6a3efe4fab44ac5c02ff921eefb https://www.encodeproject.org/files/ENCFF730TVA/@@download/ENCFF730TVA.bam archived s3://encode-public/2015/05/23/523a63ef-4669-49a2-a28c-18f3074e2317/ENCFF730TVA.bam ENCODE3 mm10-minimal archived low read length insufficient read depth ENCFF421WGK bam bam unfiltered alignments mm10 ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MRI/ 658087439 ENCODE Processing Pipeline eee81906db63d1c020c57b75d9c84874 https://www.encodeproject.org/files/ENCFF421WGK/@@download/ENCFF421WGK.bam released s3://encode-public/2016/11/28/478751a6-2f71-419c-aa46-bd00a95c8830/ENCFF421WGK.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF043ZAY bam bam alignments mm10 ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MRI/ 480726577 ENCODE Processing Pipeline 0b40fbd786ecd3a731fd23b2714e7240 https://www.encodeproject.org/files/ENCFF043ZAY/@@download/ENCFF043ZAY.bam released s3://encode-public/2016/11/28/fa9c103b-dc37-4136-80eb-5ac5c17f536f/ENCFF043ZAY.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF048CFF bam bam alignments mm10 ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF309GLL/, /files/ENCFF001MRI/ 530133443 ENCODE Processing Pipeline 4492a0f05d63567d6513b5043f736071 https://www.encodeproject.org/files/ENCFF048CFF/@@download/ENCFF048CFF.bam released s3://encode-public/2020/11/06/2f53c89f-7b5a-4dd0-811d-633af0ad2f07/ENCFF048CFF.bam ENCODE4 v1.6.1 mm10 released low read length insufficient read depth ENCFF556HPK bam bam unfiltered alignments mm10 ENCSR000DGR Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 7 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF309GLL/, /files/ENCFF001MRI/ 719012174 ENCODE Processing Pipeline d702760b00a3988879c13448d828b037 https://www.encodeproject.org/files/ENCFF556HPK/@@download/ENCFF556HPK.bam released s3://encode-public/2020/11/06/d75b3470-2a36-4557-b03e-34459fd57fa9/ENCFF556HPK.bam ENCODE4 v1.6.1 mm10 released low read length insufficient read depth ENCFF445YWO fastq fastq reads ENCSR639KBJ Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 1197742253 Kevin White, UChicago e7b773edc9cca4bff5da5d244a73dd93 https://www.encodeproject.org/files/ENCFF445YWO/@@download/ENCFF445YWO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/bb87c7a2-8ec5-4b75-8bbf-f2f9010e3195/ENCFF445YWO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF611GZZ bam bam alignments ce10 ENCSR639KBJ Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF445YWO/ 1717300273 Kevin White, UChicago abd59bb9acac39990fe33a249418825c https://www.encodeproject.org/files/ENCFF611GZZ/@@download/ENCFF611GZZ.bam released s3://encode-public/2015/08/07/2c1fa5ea-109e-4cf8-95f2-e3cdff34c394/ENCFF611GZZ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF249QJI bigWig bigWig signal of unique reads ce10 ENCSR639KBJ Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF611GZZ/ 10035978 Kevin White, UChicago 87c8c69308c49ea17bf025a826a66541 https://www.encodeproject.org/files/ENCFF249QJI/@@download/ENCFF249QJI.bigWig released s3://encode-public/2015/10/02/811311c5-a493-4bc3-973e-1607a1557a42/ENCFF249QJI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF699XRV bigWig bigWig read-depth normalized signal ce10 ENCSR639KBJ Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF611GZZ/ 9976109 Kevin White, UChicago 0f903ad35b9130b6bc9426bc963f8503 https://www.encodeproject.org/files/ENCFF699XRV/@@download/ENCFF699XRV.bigWig released s3://encode-public/2015/10/02/cbf45d91-3716-4a9f-bd74-d03dcfa125c8/ENCFF699XRV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF350QIY bam bam alignments ce11 ENCSR639KBJ Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF445YWO/ 1718761300 Kevin White, UChicago 27ea4d96f4dac65a5f16ceedaafcf66c https://www.encodeproject.org/files/ENCFF350QIY/@@download/ENCFF350QIY.bam released s3://encode-public/2016/01/20/a46bec0e-7a99-474b-8265-f90e4a60fa3f/ENCFF350QIY.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF911SSG bigWig bigWig signal of unique reads ce11 ENCSR639KBJ Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF350QIY/ 10026730 Kevin White, UChicago f7516b1a65731e237ce2e28de646d18b https://www.encodeproject.org/files/ENCFF911SSG/@@download/ENCFF911SSG.bigWig released s3://encode-public/2016/02/03/d9cd2669-31f2-49a7-92b6-18cf425a5c62/ENCFF911SSG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF374KID bigWig bigWig read-depth normalized signal ce11 ENCSR639KBJ Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF350QIY/ 9968935 Kevin White, UChicago 50e4a23d30ea17381e58e934e80839e0 https://www.encodeproject.org/files/ENCFF374KID/@@download/ENCFF374KID.bigWig released s3://encode-public/2016/02/03/62c73e2d-7749-48e2-93b6-b9afdec6d24b/ENCFF374KID.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF980FTO fastq fastq reads ENCSR753IXW Control ChIP-seq /human-donors/ENCDO135ZNV/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF849WDS/ 4669108416 Michael Snyder, Stanford 3dc948ec30eb96c0c1b5c547a1a63d5b SRA:SRR13804875 https://www.encodeproject.org/files/ENCFF980FTO/@@download/ENCFF980FTO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/c6c69778-a658-4d82-b931-8452cfaa796f/ENCFF980FTO.fastq.gz ENCFF849WDS fastq fastq reads ENCSR753IXW Control ChIP-seq /human-donors/ENCDO135ZNV/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF980FTO/ 5297119936 Michael Snyder, Stanford 8d98831299cf4043bfc2b9f8e17026a5 SRA:SRR13804875 https://www.encodeproject.org/files/ENCFF849WDS/@@download/ENCFF849WDS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/bf25cbb2-898c-49ec-8dd8-e45d1fefd412/ENCFF849WDS.fastq.gz ENCFF923FUE bam bam unfiltered alignments GRCh38 ENCSR753IXW Control ChIP-seq /human-donors/ENCDO135ZNV/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF849WDS/, /files/ENCFF110MCL/, /files/ENCFF980FTO/ 9518634421 ENCODE Processing Pipeline adf044d20d8e71e6d771b9beaaa87b56 https://www.encodeproject.org/files/ENCFF923FUE/@@download/ENCFF923FUE.bam released s3://encode-public/2020/08/20/f81ed426-fba3-431f-a7b8-86a2d208dd25/ENCFF923FUE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF576MYK bam bam alignments GRCh38 ENCSR753IXW Control ChIP-seq /human-donors/ENCDO135ZNV/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF849WDS/, /files/ENCFF110MCL/, /files/ENCFF980FTO/ 6946366683 ENCODE Processing Pipeline 3a3ea1ba77e2de9f6eb4ee2d313939d6 https://www.encodeproject.org/files/ENCFF576MYK/@@download/ENCFF576MYK.bam released s3://encode-public/2020/08/20/90e9ed40-f9cf-4a4d-a751-80180baa995d/ENCFF576MYK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF206UZF tagAlign tagAlign alignments hg19 ENCSR456XCT Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/ENCFF329EHF/, /files/ENCFF698YBF/, /files/ENCFF865NVO/ 290897096 Anshul Kundaje, Stanford 921e8cce6f4e50eeaebf27809a9dc6aa https://www.encodeproject.org/files/ENCFF206UZF/@@download/ENCFF206UZF.tagAlign.gz archived s3://encode-public/2016/03/30/4095dcc7-f382-4463-93c8-37b44ea43ec0/ENCFF206UZF.tagAlign.gz Lab custom hg19 archived low read length ENCFF709SFZ bam bam redacted unfiltered alignments hg19 ENCSR456XCT Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF329EHF/, /files/ENCFF865NVO/, /files/ENCFF698YBF/ 882703196 ENCODE Processing Pipeline 8409d8d3b683dd616ffcbaedfaf01679 https://www.encodeproject.org/files/ENCFF709SFZ/@@download/ENCFF709SFZ.bam released s3://encode-public/2018/01/24/81872137-c3fb-4329-8dce-cde1a569a43d/ENCFF709SFZ.bam ENCODE3 hg19 archived low read length ENCFF359GHU bam bam redacted alignments hg19 ENCSR456XCT Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF329EHF/, /files/ENCFF865NVO/, /files/ENCFF698YBF/ 621344311 ENCODE Processing Pipeline 9e7f2c638e56a52720ffccd7f633161b https://www.encodeproject.org/files/ENCFF359GHU/@@download/ENCFF359GHU.bam released s3://encode-public/2018/01/24/b59a6d97-67a3-4715-bc47-c1a88dbf26b9/ENCFF359GHU.bam ENCODE3 hg19 archived low read length ENCFF152JEH bam bam redacted alignments GRCh38 ENCSR456XCT Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF643CGH/, /files/ENCFF329EHF/, /files/ENCFF865NVO/, /files/ENCFF698YBF/ 621386348 ENCODE Processing Pipeline 968607ffc58e83b5fe643373c4e1f0ac https://www.encodeproject.org/files/ENCFF152JEH/@@download/ENCFF152JEH.bam released s3://encode-public/2018/01/24/e00b60ab-333b-4f04-acef-91c137b12be3/ENCFF152JEH.bam ENCODE3 GRCh38 archived low read length ENCFF166WDN bam bam redacted unfiltered alignments GRCh38 ENCSR456XCT Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF643CGH/, /files/ENCFF329EHF/, /files/ENCFF865NVO/, /files/ENCFF698YBF/ 892839693 ENCODE Processing Pipeline f0c019c53c9570df43763fb7d6780378 https://www.encodeproject.org/files/ENCFF166WDN/@@download/ENCFF166WDN.bam released s3://encode-public/2018/01/24/d2ac0431-2fd4-43cd-ba2e-6c5bd5659de1/ENCFF166WDN.bam ENCODE3 GRCh38 archived low read length ENCFF140FVH bam bam redacted alignments GRCh38 ENCSR456XCT Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF110MCL/, /files/ENCFF865NVO/, /files/ENCFF698YBF/, /files/ENCFF329EHF/ 1929112474 ENCODE Processing Pipeline 1083eb33184b650fec70ec95bf4c1d21 https://www.encodeproject.org/files/ENCFF140FVH/@@download/ENCFF140FVH.bam released s3://encode-public/2021/01/27/59d08480-507d-4539-bd20-7e4271264df9/ENCFF140FVH.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF819AIA fastq fastq reads ENCSR721CXH Control ChIP-seq /worm-donors/ENCDO824FHR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179733/'], '@type': ['Target', 'Item'], 'name': 'ccch-3-celegans', 'label': 'ccch-3', '@id': '/targets/ccch-3-celegans/', 'title': 'ccch-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd9487275-9b48-44e8-a203-191dffd8ff01', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1057929375 Kevin White, UChicago 65c485030f124f4496d2ea8b0623b3fb https://www.encodeproject.org/files/ENCFF819AIA/@@download/ENCFF819AIA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/a2d1ee21-5643-4706-b998-28abb5bb5145/ENCFF819AIA.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF212ANC bam bam alignments ce11 ENCSR721CXH Control ChIP-seq /worm-donors/ENCDO824FHR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179733/'], '@type': ['Target', 'Item'], 'name': 'ccch-3-celegans', 'label': 'ccch-3', '@id': '/targets/ccch-3-celegans/', 'title': 'ccch-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd9487275-9b48-44e8-a203-191dffd8ff01', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF819AIA/, /files/ENCFF586MOL/ 1372074118 Kevin White, UChicago 5150aa75ff47b0003252ca3ecfa2a655 https://www.encodeproject.org/files/ENCFF212ANC/@@download/ENCFF212ANC.bam released s3://encode-public/2018/05/31/bb5b123e-b6f8-486c-9180-b8d4ce7cbae0/ENCFF212ANC.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF482YOD bigWig bigWig read-depth normalized signal ce11 ENCSR721CXH Control ChIP-seq /worm-donors/ENCDO824FHR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179733/'], '@type': ['Target', 'Item'], 'name': 'ccch-3-celegans', 'label': 'ccch-3', '@id': '/targets/ccch-3-celegans/', 'title': 'ccch-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd9487275-9b48-44e8-a203-191dffd8ff01', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF212ANC/ 9951274 Kevin White, UChicago c7758d7a66ec1c3f0b707fba316cabfc https://www.encodeproject.org/files/ENCFF482YOD/@@download/ENCFF482YOD.bigWig released s3://encode-public/2018/05/31/972157ec-61e0-4144-bf82-4d99d10ed5f0/ENCFF482YOD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF380HPY bigWig bigWig signal of unique reads ce11 ENCSR721CXH Control ChIP-seq /worm-donors/ENCDO824FHR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179733/'], '@type': ['Target', 'Item'], 'name': 'ccch-3-celegans', 'label': 'ccch-3', '@id': '/targets/ccch-3-celegans/', 'title': 'ccch-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd9487275-9b48-44e8-a203-191dffd8ff01', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF212ANC/ 10024418 Kevin White, UChicago a3189e17c3de152efaed7976847f025d https://www.encodeproject.org/files/ENCFF380HPY/@@download/ENCFF380HPY.bigWig released s3://encode-public/2018/05/31/4159b8c2-01e4-4da9-b433-6678eaf1e5df/ENCFF380HPY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF298FEZ fastq fastq reads ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1846174294 Xiang-Dong Fu, UCSD cbf4b2e7157129d6325013d970c43665 SRA:SRR14103838 https://www.encodeproject.org/files/ENCFF298FEZ/@@download/ENCFF298FEZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/b81650b0-ac49-40a5-8c38-887d44f95f45/ENCFF298FEZ.fastq.gz low read length ENCFF017VZP fastq fastq reads ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 1879327701 Xiang-Dong Fu, UCSD 3332831966ded3b87e1f5c069d2f28af SRA:SRR14103839 https://www.encodeproject.org/files/ENCFF017VZP/@@download/ENCFF017VZP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/ea820ece-7b22-4c9a-b02c-54607b802c02/ENCFF017VZP.fastq.gz low read length ENCFF192EBX bam bam alignments hg19 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 38 /files/ENCFF807MUK/, /files/ENCFF298FEZ/ 1855682821 ENCODE Processing Pipeline 0ea7950d22305977c8f446ad5c860ec5 https://www.encodeproject.org/files/ENCFF192EBX/@@download/ENCFF192EBX.bam archived s3://encode-public/2015/11/12/d1d1c8d0-772d-4714-9eab-fca4f47c17e9/ENCFF192EBX.bam ENCODE3 hg19 archived low read length ENCFF604LXX bam bam alignments hg19 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 38 /files/ENCFF807MUK/, /files/ENCFF017VZP/ 1894924721 ENCODE Processing Pipeline bae9517734be0bca07cf239b8eed5179 https://www.encodeproject.org/files/ENCFF604LXX/@@download/ENCFF604LXX.bam archived s3://encode-public/2015/11/12/74437262-4135-45df-a200-4fed33a0c8f3/ENCFF604LXX.bam ENCODE3 hg19 archived low read length ENCFF029QSG bam bam unfiltered alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 38 /files/ENCFF298FEZ/, /files/ENCFF110MCL/ 2466846540 ENCODE Processing Pipeline 877a34b5889ac09ebeb95603245544be https://www.encodeproject.org/files/ENCFF029QSG/@@download/ENCFF029QSG.bam released s3://encode-public/2020/10/27/aa9155cd-e6ec-464c-ac7f-cd742b8268b8/ENCFF029QSG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF773DJG bam bam alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 38 /files/ENCFF643CGH/, /files/ENCFF017VZP/ 1893453196 ENCODE Processing Pipeline 0050f4c0be826066c8a1e14bf79a0272 https://www.encodeproject.org/files/ENCFF773DJG/@@download/ENCFF773DJG.bam released s3://encode-public/2017/12/21/576d2894-0600-47f0-8fe5-7039e419ec70/ENCFF773DJG.bam ENCODE3 GRCh38 archived low read length ENCFF608RAU bam bam unfiltered alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 38 /files/ENCFF643CGH/, /files/ENCFF017VZP/ 2526486069 ENCODE Processing Pipeline 13c66785a1302d3e72ad9c9560527ad6 https://www.encodeproject.org/files/ENCFF608RAU/@@download/ENCFF608RAU.bam released s3://encode-public/2017/12/21/4631cdc2-0aaf-41b7-bfd8-c502aa5427e9/ENCFF608RAU.bam ENCODE3 GRCh38 archived low read length ENCFF864WWH bam bam unfiltered alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 38 /files/ENCFF643CGH/, /files/ENCFF298FEZ/ 2480813297 ENCODE Processing Pipeline da3f88b51d92a3adbe7b13328e180151 https://www.encodeproject.org/files/ENCFF864WWH/@@download/ENCFF864WWH.bam released s3://encode-public/2017/12/21/ec0e054d-a806-4df6-93c6-eb807aceb97f/ENCFF864WWH.bam ENCODE3 GRCh38 archived low read length ENCFF695XBC bam bam alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 38 /files/ENCFF643CGH/, /files/ENCFF298FEZ/ 1854228226 ENCODE Processing Pipeline 5c3341c8437f80bcaf0c6d076c37c8c8 https://www.encodeproject.org/files/ENCFF695XBC/@@download/ENCFF695XBC.bam released s3://encode-public/2017/12/21/9272ea90-194b-495e-ac98-2159346b6030/ENCFF695XBC.bam ENCODE3 GRCh38 archived low read length ENCFF080OQT bam bam unfiltered alignments hg19 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 38 /files/ENCFF807MUK/, /files/ENCFF298FEZ/ 2471250365 ENCODE Processing Pipeline c82ec121da48a24c650ef61b275b5e65 https://www.encodeproject.org/files/ENCFF080OQT/@@download/ENCFF080OQT.bam released s3://encode-public/2018/01/12/f4eb9413-5484-4945-ac01-54e8985edef8/ENCFF080OQT.bam ENCODE3 hg19 archived low read length ENCFF945EEA bam bam unfiltered alignments hg19 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 38 /files/ENCFF807MUK/, /files/ENCFF017VZP/ 2516806865 ENCODE Processing Pipeline d22bc9fcf598c27293788dfd17a457de https://www.encodeproject.org/files/ENCFF945EEA/@@download/ENCFF945EEA.bam released s3://encode-public/2018/01/12/22bbb78c-866d-48e1-b382-f82c8e5e9994/ENCFF945EEA.bam ENCODE3 hg19 archived low read length ENCFF405FNP bam bam alignments hg19 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 38 /files/ENCFF807MUK/, /files/ENCFF017VZP/ 1894924749 ENCODE Processing Pipeline f5eb3c81513e29b91ce24f6f8ee1bad6 https://www.encodeproject.org/files/ENCFF405FNP/@@download/ENCFF405FNP.bam released s3://encode-public/2018/01/12/dd131e38-8c3e-43cc-9b8e-fb272ace1d80/ENCFF405FNP.bam ENCODE3 hg19 archived low read length ENCFF732BTE bam bam alignments hg19 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 38 /files/ENCFF807MUK/, /files/ENCFF298FEZ/ 1855682849 ENCODE Processing Pipeline d526b6f1f390ddbce6c85992d967cf11 https://www.encodeproject.org/files/ENCFF732BTE/@@download/ENCFF732BTE.bam released s3://encode-public/2018/01/12/f9276018-5867-492e-94ee-78f26498c20c/ENCFF732BTE.bam ENCODE3 hg19 archived low read length ENCFF293GCS bam bam unfiltered alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 38 /files/ENCFF110MCL/, /files/ENCFF017VZP/ 2508962230 ENCODE Processing Pipeline 4f0d4ff388b80387c5784a232b3cfafc https://www.encodeproject.org/files/ENCFF293GCS/@@download/ENCFF293GCS.bam released s3://encode-public/2020/10/27/c8c0256a-6210-4b20-90ea-e972b9109ba7/ENCFF293GCS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF158NJD bam bam alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 38 /files/ENCFF110MCL/, /files/ENCFF017VZP/ 1951642039 ENCODE Processing Pipeline e938bb72a66ace155012cf56127125cc https://www.encodeproject.org/files/ENCFF158NJD/@@download/ENCFF158NJD.bam released s3://encode-public/2020/10/27/a12013d8-3343-4595-826d-d487b1ff8a0d/ENCFF158NJD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF274QEC bam bam alignments GRCh38 ENCSR792MRQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 38 /files/ENCFF298FEZ/, /files/ENCFF110MCL/ 1907569173 ENCODE Processing Pipeline 5182f9a3d96e97e75e6941bb90b130a9 https://www.encodeproject.org/files/ENCFF274QEC/@@download/ENCFF274QEC.bam released s3://encode-public/2020/10/27/b3e87ab2-dfa9-4bba-a313-ea1bc81c26bf/ENCFF274QEC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF628OMO fastq fastq reads ENCSR209FGM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF424AQE/ 2996923983 Michael Snyder, Stanford b0418a9c45b7b58c6e4c9ac167887c76 SRA:SRR14838018 https://www.encodeproject.org/files/ENCFF628OMO/@@download/ENCFF628OMO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/08ceb9b3-d4e4-4774-a108-df678a249b93/ENCFF628OMO.fastq.gz mild to moderate bottlenecking ENCFF424AQE fastq fastq reads ENCSR209FGM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF628OMO/ 3424235049 Michael Snyder, Stanford 67a19f060f3b8b730930642f11acde56 SRA:SRR14838018 https://www.encodeproject.org/files/ENCFF424AQE/@@download/ENCFF424AQE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/64be0f5b-189c-4716-9ddc-d38b9469b8d5/ENCFF424AQE.fastq.gz mild to moderate bottlenecking ENCFF316VUS bam bam unfiltered alignments GRCh38 ENCSR209FGM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF628OMO/, /files/ENCFF424AQE/ 6295766908 ENCODE Processing Pipeline 3a2127acf5ab9f22ccff310392b170d8 https://www.encodeproject.org/files/ENCFF316VUS/@@download/ENCFF316VUS.bam released s3://encode-public/2020/08/20/a6f3a19e-9e06-4d3e-9da9-39d84e40e04e/ENCFF316VUS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF976TLX bam bam alignments GRCh38 ENCSR209FGM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF628OMO/, /files/ENCFF424AQE/ 4805715334 ENCODE Processing Pipeline cad3c9c49bc922098aa64d1f728b2565 https://www.encodeproject.org/files/ENCFF976TLX/@@download/ENCFF976TLX.bam released s3://encode-public/2020/08/20/db16c61e-b8b2-4c3c-a35a-87344953d522/ENCFF976TLX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF000RWL bigWig bigWig signal hg19 ENCSR000DMB Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 4533731416 Vishwanath Iyer, UTA 782bf5a344f4a710fe91b369b1d9ee71 https://www.encodeproject.org/files/ENCFF000RWL/@@download/ENCFF000RWL.bigWig archived s3://encode-public/2012/07/26/8dbc9ffe-3340-4388-92da-f186c62d15f9/ENCFF000RWL.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000RWM bam bam alignments hg19 ENCSR000DMB Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 35 751465443 Vishwanath Iyer, UTA 7ff0918d3b3ab1496824af7488de1a17 https://www.encodeproject.org/files/ENCFF000RWM/@@download/ENCFF000RWM.bam archived s3://encode-public/2012/07/26/18fe9ada-f2af-4e65-b813-64e62fd56821/ENCFF000RWM.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000RWS fastq fastq reads ENCSR000DMB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 single-ended 698035239 Vishwanath Iyer, UTA faef9165afd3051ee701f853027a4d34 https://www.encodeproject.org/files/ENCFF000RWS/@@download/ENCFF000RWS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/95a28339-e2c1-4342-ad29-db686229d137/ENCFF000RWS.fastq.gz low read depth insufficient read length ENCFF681OVW bam bam unfiltered alignments GRCh38 ENCSR000DMB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF643CGH/, /files/ENCFF000RWS/ 916098514 ENCODE Processing Pipeline 09edd59d943ce1b4e29691cbbf7955e3 https://www.encodeproject.org/files/ENCFF681OVW/@@download/ENCFF681OVW.bam released s3://encode-public/2016/07/28/980dbb79-d7c1-48d0-8818-447c2af42a42/ENCFF681OVW.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF020CFW bam bam alignments GRCh38 ENCSR000DMB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF643CGH/, /files/ENCFF000RWS/ 620207966 ENCODE Processing Pipeline 8ad1d29262d7480a28c7e31e4bcd0790 https://www.encodeproject.org/files/ENCFF020CFW/@@download/ENCFF020CFW.bam released s3://encode-public/2016/07/28/7036dd5c-ea56-4b7a-bad3-f753b6a8e961/ENCFF020CFW.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF765JUA bam bam unfiltered alignments GRCh38 ENCSR000DMB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF110MCL/, /files/ENCFF000RWS/ 894622664 ENCODE Processing Pipeline 5a661a97860c8b39f8fe29ce07e614ab https://www.encodeproject.org/files/ENCFF765JUA/@@download/ENCFF765JUA.bam released s3://encode-public/2020/09/03/9e3cf6bd-7e18-4de7-9f76-3a3e2517dd26/ENCFF765JUA.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF500EAO bam bam alignments GRCh38 ENCSR000DMB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF110MCL/, /files/ENCFF000RWS/ 676924857 ENCODE Processing Pipeline 47d665841b59c19e50d687a8e7bf6496 https://www.encodeproject.org/files/ENCFF500EAO/@@download/ENCFF500EAO.bam released s3://encode-public/2020/09/03/a8e83525-1494-412d-b142-da6ed7ffe1de/ENCFF500EAO.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF636INC tagAlign tagAlign alignments hg19 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 /files/ENCFF852FAM/, /files/ENCFF719UBC/, /files/ENCFF850XFV/ 224832007 Anshul Kundaje, Stanford 0de2d6a7145163a8fed0d41e575eb783 https://www.encodeproject.org/files/ENCFF636INC/@@download/ENCFF636INC.tagAlign.gz archived s3://encode-public/2016/03/30/f7a4afd9-68e6-4ad0-96a7-31346eebdc81/ENCFF636INC.tagAlign.gz Lab custom hg19 archived low read length ENCFF850XFV fastq fastq reads ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 570442991 Zhiping Weng, UMass 75d4505c2b71e8990677fc28f13e3884 SRA:SRR1067376 https://www.encodeproject.org/files/ENCFF850XFV/@@download/ENCFF850XFV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/98e550fe-cd94-434f-b2c0-79618235d229/ENCFF850XFV.fastq.gz low read length ENCFF719UBC fastq fastq reads ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 580430284 Zhiping Weng, UMass 3f02be97da06b09656469b9665359aab SRA:SRR1067316 https://www.encodeproject.org/files/ENCFF719UBC/@@download/ENCFF719UBC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/cdd1190f-332d-4ba5-822c-f571b0deec67/ENCFF719UBC.fastq.gz low read length ENCFF852FAM fastq fastq reads ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 579058685 Zhiping Weng, UMass fb7f9442833118be25cdcfd938fabac8 SRA:SRR1067228 https://www.encodeproject.org/files/ENCFF852FAM/@@download/ENCFF852FAM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/f8d33677-b369-428d-a1f8-0bd20f762330/ENCFF852FAM.fastq.gz low read length ENCFF885YAI bam bam unfiltered alignments hg19 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF719UBC/, /files/ENCFF850XFV/, /files/ENCFF807MUK/, /files/ENCFF852FAM/ 1987409555 ENCODE Processing Pipeline 68f276971cbda3b5124659aba45129d5 https://www.encodeproject.org/files/ENCFF885YAI/@@download/ENCFF885YAI.bam released s3://encode-public/2016/12/19/0caee8f5-1b08-4766-abb7-b6f196f113c3/ENCFF885YAI.bam ENCODE3 hg19 archived low read length ENCFF900ASE bam bam unfiltered alignments GRCh38 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF719UBC/, /files/ENCFF850XFV/, /files/ENCFF852FAM/, /files/ENCFF643CGH/ 2004677460 ENCODE Processing Pipeline e0dad5aff50caf9d50447b75ec6f1b20 https://www.encodeproject.org/files/ENCFF900ASE/@@download/ENCFF900ASE.bam released s3://encode-public/2016/12/19/fb9af08c-bd27-4ac7-9229-da6459b69d36/ENCFF900ASE.bam ENCODE3 GRCh38 archived low read length ENCFF391JKP bam bam alignments hg19 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF719UBC/, /files/ENCFF850XFV/, /files/ENCFF807MUK/, /files/ENCFF852FAM/ 1389026901 ENCODE Processing Pipeline c92e00b68052d0bec99d7f386c8ba035 https://www.encodeproject.org/files/ENCFF391JKP/@@download/ENCFF391JKP.bam released s3://encode-public/2016/12/19/dd5feb80-f077-44ff-b516-b7ef8aaf22b4/ENCFF391JKP.bam ENCODE3 hg19 archived low read length ENCFF165EHS bam bam alignments GRCh38 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF719UBC/, /files/ENCFF850XFV/, /files/ENCFF852FAM/, /files/ENCFF643CGH/ 1388924712 ENCODE Processing Pipeline 0a115b90be9e718acda076f8798fc719 https://www.encodeproject.org/files/ENCFF165EHS/@@download/ENCFF165EHS.bam released s3://encode-public/2016/12/19/a7465772-1f1c-4070-8fd4-11311e034b8e/ENCFF165EHS.bam ENCODE3 GRCh38 archived low read length ENCFF868IKZ tagAlign tagAlign alignments hg19 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF617COT/, /files/ENCFF954TXY/ 223195762 Anshul Kundaje, Stanford 03ea9a42621bb0be0d8651f1b1cc8655 https://www.encodeproject.org/files/ENCFF868IKZ/@@download/ENCFF868IKZ.tagAlign.gz archived s3://encode-public/2016/03/30/fee9a190-f181-44e7-ae68-89ddfe54b518/ENCFF868IKZ.tagAlign.gz Lab custom hg19 archived low read length ENCFF915NQY bam bam redacted unfiltered alignments GRCh38 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF954TXY/, /files/ENCFF643CGH/, /files/ENCFF617COT/ 653999035 ENCODE Processing Pipeline 6c406e9d1213192ccb917c287725b1d1 https://www.encodeproject.org/files/ENCFF915NQY/@@download/ENCFF915NQY.bam released s3://encode-public/2018/01/19/91fbc33b-3075-4dc7-bfa4-00aaeb90718c/ENCFF915NQY.bam ENCODE3 GRCh38 archived low read length ENCFF609VLB bam bam redacted alignments hg19 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF954TXY/, /files/ENCFF807MUK/, /files/ENCFF617COT/ 461015101 ENCODE Processing Pipeline 466cdd6fdc3d62c15b214f3b370612dc https://www.encodeproject.org/files/ENCFF609VLB/@@download/ENCFF609VLB.bam released s3://encode-public/2018/01/19/ac93c333-9977-4e20-bf51-8970d704a870/ENCFF609VLB.bam ENCODE3 hg19 archived low read length ENCFF567CGS bam bam redacted alignments GRCh38 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF954TXY/, /files/ENCFF643CGH/, /files/ENCFF617COT/ 460982920 ENCODE Processing Pipeline 394192b22e0c7f5abd38f8bc4e443adb https://www.encodeproject.org/files/ENCFF567CGS/@@download/ENCFF567CGS.bam released s3://encode-public/2018/01/19/d8069ebe-8880-4345-9fe3-720d76ff0f55/ENCFF567CGS.bam ENCODE3 GRCh38 archived low read length ENCFF738YSN bam bam redacted unfiltered alignments hg19 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF954TXY/, /files/ENCFF807MUK/, /files/ENCFF617COT/ 647628832 ENCODE Processing Pipeline dfb25a40ab002017937617edc641922d https://www.encodeproject.org/files/ENCFF738YSN/@@download/ENCFF738YSN.bam released s3://encode-public/2018/01/19/cfb646d0-5c3b-4037-a662-9fecc48285f0/ENCFF738YSN.bam ENCODE3 hg19 archived low read length ENCFF687ZNJ bam bam redacted alignments GRCh38 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF852FAM/, /files/ENCFF719UBC/, /files/ENCFF110MCL/, /files/ENCFF850XFV/ 1500749234 ENCODE Processing Pipeline 7145d35c3922cff135dc14db26a59df8 https://www.encodeproject.org/files/ENCFF687ZNJ/@@download/ENCFF687ZNJ.bam released s3://encode-public/2021/01/27/137eb086-3154-4c9a-b582-3e76d306c79a/ENCFF687ZNJ.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF968LMW bam bam redacted alignments GRCh38 ENCSR510OLN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens phorbol 13-acetate 12-myristate, ionomycin DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF954TXY/, /files/ENCFF110MCL/, /files/ENCFF617COT/ 1490189151 ENCODE Processing Pipeline 2cdeef6fe64866d1f304e874bbf4ea5f https://www.encodeproject.org/files/ENCFF968LMW/@@download/ENCFF968LMW.bam released s3://encode-public/2021/01/27/50d9c4c2-3bca-49ca-9013-1ac3c574424f/ENCFF968LMW.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF277UJT fastq fastq reads ENCSR608IVH Control ChIP-seq /human-donors/ENCDO520EJG/ NTR:0000493 left ventricle myocardium inferior tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 567486180 Bradley Bernstein, Broad 3fa3adba05888eba001de656be9b2fbf SRA:SRR14636615 https://www.encodeproject.org/files/ENCFF277UJT/@@download/ENCFF277UJT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/c8b2db9e-0812-4fef-b45e-01aea55d88fe/ENCFF277UJT.fastq.gz ENCFF745IFH fastq fastq reads ENCSR608IVH Control ChIP-seq /human-donors/ENCDO520EJG/ NTR:0000493 left ventricle myocardium inferior tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 555739141 Bradley Bernstein, Broad 83b10d877d9eb7e55b5615ffab1a12f5 SRA:SRR14636616 https://www.encodeproject.org/files/ENCFF745IFH/@@download/ENCFF745IFH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/a414fcaf-260c-4126-9b56-dfd18618dda9/ENCFF745IFH.fastq.gz ENCFF818CFF fastq fastq reads ENCSR608IVH Control ChIP-seq /human-donors/ENCDO520EJG/ NTR:0000493 left ventricle myocardium inferior tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 569187460 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/files/ENCFF015CUD/, /files/ENCFF277UJT/, /files/ENCFF537TSX/, /files/ENCFF745IFH/, /files/ENCFF176WDD/, /files/ENCFF237UIH/, /files/ENCFF110MCL/ 3643258398 ENCODE Processing Pipeline 6f8bec19225da4cfb9953551ac5b6b3c https://www.encodeproject.org/files/ENCFF258IRE/@@download/ENCFF258IRE.bam released s3://encode-public/2021/04/09/8d69a85f-abf0-4bb2-953b-95b33582d220/ENCFF258IRE.bam ENCODE4 v1.8.0 GRCh38 released ENCFF852QYP bam bam unfiltered alignments GRCh38 ENCSR608IVH Control ChIP-seq /human-donors/ENCDO520EJG/ NTR:0000493 left ventricle myocardium inferior tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF628UEX/, /files/ENCFF392SII/, /files/ENCFF410DKO/, /files/ENCFF434LIC/, /files/ENCFF462UEJ/, /files/ENCFF796OSE/, /files/ENCFF110MCL/, /files/ENCFF533PZG/, /files/ENCFF917RBD/ 3112013061 ENCODE Processing Pipeline ce93374d6d55c70a8a4b379f75b3402d https://www.encodeproject.org/files/ENCFF852QYP/@@download/ENCFF852QYP.bam released s3://encode-public/2021/04/09/59a5faa7-2a0d-469b-85a4-9ba26f605d91/ENCFF852QYP.bam ENCODE4 v1.8.0 GRCh38 released ENCFF801IUM bam bam alignments GRCh38 ENCSR608IVH Control ChIP-seq /human-donors/ENCDO520EJG/ NTR:0000493 left ventricle myocardium inferior tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF628UEX/, /files/ENCFF392SII/, /files/ENCFF410DKO/, /files/ENCFF434LIC/, /files/ENCFF462UEJ/, /files/ENCFF796OSE/, /files/ENCFF110MCL/, /files/ENCFF533PZG/, /files/ENCFF917RBD/ 2591326896 ENCODE Processing Pipeline 7fc1d1fe5e21417a0c6a41996fe3b20d https://www.encodeproject.org/files/ENCFF801IUM/@@download/ENCFF801IUM.bam released s3://encode-public/2021/04/09/29e3f233-2ea6-490d-95bb-5e67bc4725cc/ENCFF801IUM.bam ENCODE4 v1.8.0 GRCh38 released ENCFF850KKY bam bam alignments GRCh38 ENCSR608IVH Control ChIP-seq /human-donors/ENCDO520EJG/ NTR:0000493 left ventricle myocardium inferior tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF818CFF/, /files/ENCFF400TJD/, /files/ENCFF015CUD/, /files/ENCFF277UJT/, /files/ENCFF537TSX/, /files/ENCFF745IFH/, /files/ENCFF176WDD/, /files/ENCFF237UIH/, /files/ENCFF110MCL/ 3014324326 ENCODE Processing Pipeline 941cfea869d1805c8b66c1b43408cb24 https://www.encodeproject.org/files/ENCFF850KKY/@@download/ENCFF850KKY.bam released s3://encode-public/2021/04/09/4a484198-77fc-4432-bcf5-5e478a2e2acb/ENCFF850KKY.bam ENCODE4 v1.8.0 GRCh38 released ENCFF001HTA bam bam alignments hg19 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTJ/ 952026273 John Stamatoyannopoulos, UW 5081f727d9ff27391c09e391b3661da5 https://www.encodeproject.org/files/ENCFF001HTA/@@download/ENCFF001HTA.bam archived s3://encode-public/2011/06/25/85d65ca2-fd6f-44b2-90e5-003c0edf0bc7/ENCFF001HTA.bam Lab custom hg19 archived low read depth, low read length ENCFF001HTB bigWig bigWig raw signal hg19 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HTA/ 189446666 John Stamatoyannopoulos, UW 4d860ef11fe0f3ac2c629e5238b40df9 https://www.encodeproject.org/files/ENCFF001HTB/@@download/ENCFF001HTB.bigWig archived s3://encode-public/2011/06/25/7e227751-2c3b-43a9-aa4b-db6032d12423/ENCFF001HTB.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HTJ fastq fastq reads ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 1031026092 John Stamatoyannopoulos, UW 58767348bba4f5b6ddce676946cd7b76 https://www.encodeproject.org/files/ENCFF001HTJ/@@download/ENCFF001HTJ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/4eb17c5a-5e15-440c-aa4c-1a89ca045eb5/ENCFF001HTJ.fastq.gz low read depth, low read length ENCFF830DMG bam bam unfiltered alignments GRCh38 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTJ/, /files/ENCFF643CGH/ 1226777915 ENCODE Processing Pipeline 2de5a6a6ccc0107b8e8a235e65afb343 https://www.encodeproject.org/files/ENCFF830DMG/@@download/ENCFF830DMG.bam released s3://encode-public/2016/08/09/bb1cae47-3098-48bf-9478-9a737784a0ee/ENCFF830DMG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF862DPC bam bam alignments GRCh38 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTJ/, /files/ENCFF643CGH/ 848755178 ENCODE Processing Pipeline 93e27d3f6fe0d627f2b89e570b149873 https://www.encodeproject.org/files/ENCFF862DPC/@@download/ENCFF862DPC.bam released s3://encode-public/2016/08/09/162ca840-00d6-42a1-8b62-7c2a6a0f94b9/ENCFF862DPC.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF189KIL bam bam unfiltered alignments hg19 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTJ/, /files/ENCFF807MUK/ 1219147383 ENCODE Processing Pipeline 3a86a3dc1995cbb75eabbe31a8910827 https://www.encodeproject.org/files/ENCFF189KIL/@@download/ENCFF189KIL.bam released s3://encode-public/2016/11/13/a187d860-af8b-4d11-89b3-53b7dd2da2c3/ENCFF189KIL.bam ENCODE3 hg19 archived low read depth, low read length ENCFF579PZV bam bam alignments hg19 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTJ/, /files/ENCFF807MUK/ 848835464 ENCODE Processing Pipeline 67ea5b63c36c10b54745a9fc6cb04198 https://www.encodeproject.org/files/ENCFF579PZV/@@download/ENCFF579PZV.bam released s3://encode-public/2016/11/13/982ce522-19ed-4563-a698-a1e5703a9007/ENCFF579PZV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF669PRD bam bam alignments GRCh38 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HTJ/ 915162334 ENCODE Processing Pipeline 9faee56fedabbe05f82bf76cbd5a3a11 https://www.encodeproject.org/files/ENCFF669PRD/@@download/ENCFF669PRD.bam released s3://encode-public/2020/09/03/1fe7b30a-06d9-41a1-876b-69314dfdd75d/ENCFF669PRD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF171QIC bam bam unfiltered alignments GRCh38 ENCSR000DVT Control ChIP-seq /human-donors/ENCDO000AAY/ CLO:0007045 Jurkat, Clone E6-1 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HTJ/ 1209506739 ENCODE Processing Pipeline 29cfd55dde1aa7c560a33e810e221e8b https://www.encodeproject.org/files/ENCFF171QIC/@@download/ENCFF171QIC.bam released s3://encode-public/2020/09/03/937b83a9-a0df-4f78-a4f3-0b242898f1d2/ENCFF171QIC.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF034JHX bam bam redacted unfiltered alignments GRCh38 ENCSR513BYX Control ChIP-seq /human-donors/ENCDO123NFT/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF921OII/, /files/ENCFF068XZV/, /files/ENCFF643CGH/ 703005946 ENCODE Processing Pipeline 64bc8a8ef1bb914a6cf872c1a3933be2 https://www.encodeproject.org/files/ENCFF034JHX/@@download/ENCFF034JHX.bam released s3://encode-public/2017/11/09/17386117-3285-4f69-8d8d-5b38b8beee05/ENCFF034JHX.bam ENCODE3 GRCh38 archived ENCFF347ZZQ bam bam redacted alignments GRCh38 ENCSR513BYX Control ChIP-seq /human-donors/ENCDO123NFT/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF921OII/, /files/ENCFF068XZV/, /files/ENCFF643CGH/ 478352882 ENCODE Processing Pipeline b1f6e6dbd51ea6bfab6fe99bf98a930a https://www.encodeproject.org/files/ENCFF347ZZQ/@@download/ENCFF347ZZQ.bam released s3://encode-public/2017/11/09/7d7511cc-f5d4-43f3-9e67-87a1210587d1/ENCFF347ZZQ.bam ENCODE3 GRCh38 archived ENCFF117LTD bam bam redacted unfiltered alignments hg19 ENCSR513BYX Control ChIP-seq /human-donors/ENCDO123NFT/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF921OII/, /files/ENCFF068XZV/, /files/ENCFF807MUK/ 687120285 ENCODE Processing Pipeline 77183e9ec87fec05d23b46b00fb92e5e https://www.encodeproject.org/files/ENCFF117LTD/@@download/ENCFF117LTD.bam released s3://encode-public/2018/01/20/14c6e595-d835-4667-b49d-4b3576f341b3/ENCFF117LTD.bam ENCODE3 hg19 archived ENCFF663GXH bam bam redacted alignments hg19 ENCSR513BYX Control ChIP-seq /human-donors/ENCDO123NFT/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF921OII/, /files/ENCFF068XZV/, /files/ENCFF807MUK/ 476899142 ENCODE Processing Pipeline b5005be778f5a4060734692c741a8586 https://www.encodeproject.org/files/ENCFF663GXH/@@download/ENCFF663GXH.bam released s3://encode-public/2018/01/20/db173334-973d-45f4-9655-a7d1bc870afb/ENCFF663GXH.bam ENCODE3 hg19 archived ENCFF913MAG bam bam redacted alignments GRCh38 ENCSR513BYX Control ChIP-seq /human-donors/ENCDO123NFT/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF687HSP/, /files/ENCFF590CUT/, /files/ENCFF110MCL/ 2515075902 ENCODE Processing Pipeline 5a04792b27651fa56404dba05aba1596 https://www.encodeproject.org/files/ENCFF913MAG/@@download/ENCFF913MAG.bam released s3://encode-public/2021/01/28/d0fef665-e902-4cdd-8e9d-0be6e641f3ab/ENCFF913MAG.bam ENCODE4 v1.7.0 GRCh38 released ENCFF000WJS bam bam alignments hg19 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WJW/ 222889594 Michael Snyder, Stanford 1ab92d818ee706dfda3ddcac9c8173d5 https://www.encodeproject.org/files/ENCFF000WJS/@@download/ENCFF000WJS.bam archived s3://encode-public/2012/07/01/463d5674-ab52-4610-bf59-374bd538331b/ENCFF000WJS.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WJT bigWig bigWig signal hg19 ENCSR000EAS Control ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 367926546 Michael Snyder, Stanford c3def3b3f6a215062e19881c56a7376e https://www.encodeproject.org/files/ENCFF000WJT/@@download/ENCFF000WJT.bigWig archived s3://encode-public/2012/07/01/f8673502-6e58-41dd-a1e0-8c8991346c65/ENCFF000WJT.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WJU bam bam alignments hg19 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WKI/ 1074219253 Michael Snyder, Stanford f61b57131df678caf86653bab647e284 https://www.encodeproject.org/files/ENCFF000WJU/@@download/ENCFF000WJU.bam archived s3://encode-public/2012/07/01/5c950ef0-f90c-4d67-bb71-fde47b171b64/ENCFF000WJU.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WJW fastq fastq reads ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 175901731 Michael Snyder, Stanford 45c69d9642763e4a6f608e972b54f6b8 https://www.encodeproject.org/files/ENCFF000WJW/@@download/ENCFF000WJW.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/74ece163-891e-47c3-a180-fcb1fc42a9d4/ENCFF000WJW.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF000WKI fastq fastq reads ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 855376297 Michael Snyder, Stanford d93b29db3fc416d449c8b74580b6a2f9 https://www.encodeproject.org/files/ENCFF000WKI/@@download/ENCFF000WKI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/f9d09a92-94d2-4564-bd81-d91e46e42903/ENCFF000WKI.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF601IYE bam bam unfiltered alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WJW/ 223933161 ENCODE Processing Pipeline 536e189577eb0160856700d9d72685ec https://www.encodeproject.org/files/ENCFF601IYE/@@download/ENCFF601IYE.bam released s3://encode-public/2016/10/26/ddda3054-5e18-4667-9e02-9b9cae090827/ENCFF601IYE.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF034BYM bam bam alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WJW/ 136237769 ENCODE Processing Pipeline a39957e3496e6a85d2f1e7509c231e18 https://www.encodeproject.org/files/ENCFF034BYM/@@download/ENCFF034BYM.bam released s3://encode-public/2016/10/26/e176ddf6-2b03-4b19-beb2-115fd2c94fbe/ENCFF034BYM.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF307THL bam bam unfiltered alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WKI/ 1080207738 ENCODE Processing Pipeline da9af5d319811197125bfc2e768ee3a0 https://www.encodeproject.org/files/ENCFF307THL/@@download/ENCFF307THL.bam released s3://encode-public/2016/10/26/7c23edbe-a585-4ff3-ac7b-fa0edea88fbb/ENCFF307THL.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF842AKP bam bam alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WKI/ 408606408 ENCODE Processing Pipeline 6eeb416b93871e576d687dd6510bd944 https://www.encodeproject.org/files/ENCFF842AKP/@@download/ENCFF842AKP.bam released s3://encode-public/2016/10/26/b0972dd4-89da-48d6-9d83-bfaf45d31202/ENCFF842AKP.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF048QSF bam bam alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WKI/ 390427259 ENCODE Processing Pipeline 556ed9b8f6b29a976956a816a2b0f2b8 https://www.encodeproject.org/files/ENCFF048QSF/@@download/ENCFF048QSF.bam released s3://encode-public/2020/10/27/2f11d2b7-f263-4010-8598-c1c96b5f2daf/ENCFF048QSF.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF757QTJ bam bam unfiltered alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WKI/ 1011139624 ENCODE Processing Pipeline fbf3f986d5f387f392072d4d0e98c0a5 https://www.encodeproject.org/files/ENCFF757QTJ/@@download/ENCFF757QTJ.bam released s3://encode-public/2020/10/27/ecf6a6cc-7baa-4d0f-94a7-801c7996ac44/ENCFF757QTJ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF810JAJ bam bam alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WJW/ 139559400 ENCODE Processing Pipeline b88cfa5a6bb5ca6ead4dc901c5ddb3d4 https://www.encodeproject.org/files/ENCFF810JAJ/@@download/ENCFF810JAJ.bam released s3://encode-public/2020/10/27/e74d2735-d870-458a-9b26-f048be2b3e7f/ENCFF810JAJ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF186QIY bam bam unfiltered alignments GRCh38 ENCSR000EAS Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WJW/ 212524906 ENCODE Processing Pipeline b69cb92b6cd17f409d89377956da3090 https://www.encodeproject.org/files/ENCFF186QIY/@@download/ENCFF186QIY.bam released s3://encode-public/2020/10/27/7419d165-1269-4d52-805f-ac355f6f9f34/ENCFF186QIY.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF493BXI bam bam alignments mm10-minimal ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF890PHI/ 2056706130 ENCODE Processing Pipeline ee44f1754ca678986909de3d1f764639 https://www.encodeproject.org/files/ENCFF493BXI/@@download/ENCFF493BXI.bam archived s3://encode-public/2015/06/24/b5e08d9f-9cfb-4163-b316-4ed77e8489eb/ENCFF493BXI.bam ENCFF330HOT bam bam alignments mm10-minimal ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF586JAL/ 1966113154 ENCODE Processing Pipeline e4c2cce6e7ce9b80528c49d3b2238cec https://www.encodeproject.org/files/ENCFF330HOT/@@download/ENCFF330HOT.bam archived s3://encode-public/2015/06/24/fc68c457-cc6b-45dd-9f65-c577b1d40e03/ENCFF330HOT.bam ENCFF586JAL fastq fastq reads ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2311643390 Bing Ren, UCSD 85c6c0c9f1d50187032639caa4684a50 SRA:SRR3652949 https://www.encodeproject.org/files/ENCFF586JAL/@@download/ENCFF586JAL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/5371db86-ef6a-4fc3-8187-5e9167294a22/ENCFF586JAL.fastq.gz ENCFF890PHI fastq fastq reads ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2416988087 Bing Ren, UCSD 9b75c3d424edf59fdcc9668a87c0f270 SRA:SRR3652947 https://www.encodeproject.org/files/ENCFF890PHI/@@download/ENCFF890PHI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/6fd5c933-6923-4aa5-b1cd-eea71d52dbca/ENCFF890PHI.fastq.gz ENCFF974QSS fastq fastq reads ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 428429775 Bing Ren, UCSD f0233e83a341e1fa6ba10a22e81f510f SRA:SRR3652948 https://www.encodeproject.org/files/ENCFF974QSS/@@download/ENCFF974QSS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/521b8d4d-48f8-49f7-82e1-db11a2a31d93/ENCFF974QSS.fastq.gz ENCFF573WFQ fastq fastq reads ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 834827890 Bing Ren, UCSD 68b4629fc7f7ec59afa6af4bc25616d8 SRA:SRR3652950 https://www.encodeproject.org/files/ENCFF573WFQ/@@download/ENCFF573WFQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/6ea98dc0-55d7-43d2-9e98-eb6ffd9fa081/ENCFF573WFQ.fastq.gz ENCFF117QRC bam bam unfiltered alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF573WFQ/, /files/ENCFF586JAL/ 4059656649 ENCODE Processing Pipeline 26accd9040cb3afa83f455e551fb93ba https://www.encodeproject.org/files/ENCFF117QRC/@@download/ENCFF117QRC.bam released s3://encode-public/2016/07/18/c48f4ba0-90d4-4179-abba-cfe055f9ae76/ENCFF117QRC.bam ENCODE3 mm10 archived ENCFF893IOJ bam bam alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF974QSS/, /files/ENCFF890PHI/ 2514805851 ENCODE Processing Pipeline 375fd17961df577a17fd9605cbb6cafa https://www.encodeproject.org/files/ENCFF893IOJ/@@download/ENCFF893IOJ.bam released s3://encode-public/2016/07/18/02691dd1-bc6f-4b10-a885-73cd72ae540c/ENCFF893IOJ.bam ENCODE3 mm10 archived ENCFF248PGK bam bam unfiltered alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF974QSS/, /files/ENCFF890PHI/ 3613892781 ENCODE Processing Pipeline 5590edfdad9b30da4a6bc84a493b69d1 https://www.encodeproject.org/files/ENCFF248PGK/@@download/ENCFF248PGK.bam released s3://encode-public/2016/07/18/ed079e03-0f12-48e5-a26c-dad1df5ca366/ENCFF248PGK.bam ENCODE3 mm10 archived ENCFF279URC bam bam alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF573WFQ/, /files/ENCFF586JAL/ 2813654969 ENCODE Processing Pipeline fa7bd58daf95d2dced0618c425d7d4ae https://www.encodeproject.org/files/ENCFF279URC/@@download/ENCFF279URC.bam released s3://encode-public/2016/07/18/34b52561-4b3e-41e6-a7d3-1ffb97db7b27/ENCFF279URC.bam ENCODE3 mm10 archived ENCFF447GYD bam bam unfiltered alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF573WFQ/, /files/ENCFF309GLL/, /files/ENCFF586JAL/ 3948190760 ENCODE Processing Pipeline 8da31634aa9f73d9454e8d159b9cbfbc https://www.encodeproject.org/files/ENCFF447GYD/@@download/ENCFF447GYD.bam released s3://encode-public/2020/10/07/027f5089-a45b-40d3-8cea-09fd8da2af28/ENCFF447GYD.bam ENCODE4 v1.5.1 mm10 released ENCFF242IVR bam bam unfiltered alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF309GLL/, /files/ENCFF974QSS/, /files/ENCFF890PHI/ 3529147207 ENCODE Processing Pipeline 7438267125144f45624e2355951bc685 https://www.encodeproject.org/files/ENCFF242IVR/@@download/ENCFF242IVR.bam released s3://encode-public/2020/10/07/6f67d97c-50dc-44ca-9431-9acf5c26941d/ENCFF242IVR.bam ENCODE4 v1.5.1 mm10 released ENCFF464WOT bam bam alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF573WFQ/, /files/ENCFF309GLL/, /files/ENCFF586JAL/ 2903518729 ENCODE Processing Pipeline 18580527bb72236984b2ae567b0132e9 https://www.encodeproject.org/files/ENCFF464WOT/@@download/ENCFF464WOT.bam released s3://encode-public/2020/10/07/77009d91-8f4f-416e-83b2-8eca054e717e/ENCFF464WOT.bam ENCODE4 v1.5.1 mm10 released ENCFF685SXR bam bam alignments mm10 ENCSR742ZUI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF309GLL/, /files/ENCFF974QSS/, /files/ENCFF890PHI/ 2605132411 ENCODE Processing Pipeline 1506c84bfe3a9803e03f0f1cf58efabf https://www.encodeproject.org/files/ENCFF685SXR/@@download/ENCFF685SXR.bam released s3://encode-public/2020/10/07/d2619b74-0156-41d8-a769-1ca1b77ac861/ENCFF685SXR.bam ENCODE4 v1.5.1 mm10 released ENCFF777WGZ fastq fastq reads ENCSR331XEF Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 444560804 Kevin White, UChicago e9b367dd89163488eed2a6959870e9f6 https://www.encodeproject.org/files/ENCFF777WGZ/@@download/ENCFF777WGZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/7ac07a53-c5d7-4f3b-b9e5-dd9e6dfa3865/ENCFF777WGZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF259PTP bam bam alignments dm3 ENCSR331XEF Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF777WGZ/ 656388913 Kevin White, UChicago 281e011ceca5f935ff225219e14015ba https://www.encodeproject.org/files/ENCFF259PTP/@@download/ENCFF259PTP.bam released s3://encode-public/2015/08/03/ee882c7f-05c8-4381-a534-7f2298d90cad/ENCFF259PTP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF484FNE bigWig bigWig read-depth normalized signal dm3 ENCSR331XEF Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF259PTP/ 15243973 Kevin White, UChicago c21dbf0314efc8313af2f4648c8441ba https://www.encodeproject.org/files/ENCFF484FNE/@@download/ENCFF484FNE.bigWig released s3://encode-public/2015/10/06/3de1eff2-4e22-4e22-8c8f-2eb251d306b8/ENCFF484FNE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF503WNX bigWig bigWig signal of unique reads dm3 ENCSR331XEF Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF259PTP/ 15257223 Kevin White, UChicago 973ba6ca7632b36fd81bff1763d21009 https://www.encodeproject.org/files/ENCFF503WNX/@@download/ENCFF503WNX.bigWig released s3://encode-public/2015/10/06/cb8d0d9f-647b-4f57-8399-d01b136ebe7e/ENCFF503WNX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF864SDN bam bam alignments dm6 ENCSR331XEF Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF777WGZ/ 645346874 Kevin White, UChicago 7f5120559dc85ca307457bcbd78bfdac https://www.encodeproject.org/files/ENCFF864SDN/@@download/ENCFF864SDN.bam released s3://encode-public/2016/04/21/0ff69518-9a30-4acb-ad24-aae4670d6590/ENCFF864SDN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF677EHX bigWig bigWig signal of unique reads dm6 ENCSR331XEF Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF864SDN/ 17368110 Kevin White, UChicago 0e12d0cfd063ef500dc9a14302f7ddf2 https://www.encodeproject.org/files/ENCFF677EHX/@@download/ENCFF677EHX.bigWig released s3://encode-public/2016/06/20/8dbeb1f3-b8c2-42d5-8399-150c358a548f/ENCFF677EHX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF870URI bigWig bigWig read-depth normalized signal dm6 ENCSR331XEF Control ChIP-seq /fly-donors/ENCDO119RIM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3772082/'], '@type': ['Target', 'Item'], 'name': 'kay-dmelanogaster', 'label': 'kay', '@id': '/targets/kay-dmelanogaster/', 'title': 'kay (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7060f09b-f39b-46aa-90f0-5f16707aa478', 'status': 'released'} dm3 3R 25575804 25663303 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF864SDN/ 17346104 Kevin White, UChicago 6d9c9fb4fae59de5259ee32b037f6d2e https://www.encodeproject.org/files/ENCFF870URI/@@download/ENCFF870URI.bigWig released s3://encode-public/2016/06/20/006de533-bcb2-4153-a2a9-b6058eab4ecc/ENCFF870URI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF913NGJ fastq fastq reads ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 53383372 Kevin White, UChicago fefa7bf42e6db9b652bdbe07ed2784ed https://www.encodeproject.org/files/ENCFF913NGJ/@@download/ENCFF913NGJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/41a9d9a7-3ccc-4632-bc67-0946718c50e2/ENCFF913NGJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF556JUK fastq fastq reads ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 447785778 Kevin White, UChicago f7b0d981c8b7073293b9ec6648a52828 https://www.encodeproject.org/files/ENCFF556JUK/@@download/ENCFF556JUK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/906dc7a6-b99a-474d-a302-1718d8be0a8d/ENCFF556JUK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF505OKE bigWig bigWig read-depth normalized signal dm3 ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF237RWO/ 15407433 Kevin White, UChicago e63b78ae2e6c55b3c9f14805e49b6131 https://www.encodeproject.org/files/ENCFF505OKE/@@download/ENCFF505OKE.bigWig released s3://encode-public/2018/08/08/a96acd9f-827f-49ac-ac90-5ae27e195143/ENCFF505OKE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF237RWO bam bam alignments dm3 ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF913NGJ/, /files/ENCFF556JUK/, /files/ENCFF059UHX/ 746815383 Kevin White, UChicago 157ef4d528ec81ca0f9fd184c5938b55 https://www.encodeproject.org/files/ENCFF237RWO/@@download/ENCFF237RWO.bam released s3://encode-public/2018/08/08/7c567b92-c5ba-41bb-8ab4-1cc9786a3e6c/ENCFF237RWO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF613VDL bigWig bigWig signal of unique reads dm3 ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF237RWO/ 15350901 Kevin White, UChicago 06773758b6f1e01913a23facc7cfa027 https://www.encodeproject.org/files/ENCFF613VDL/@@download/ENCFF613VDL.bigWig released s3://encode-public/2018/08/08/0c807021-7973-4f85-9083-85933752628f/ENCFF613VDL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF795BKT bam bam alignments dm6 ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF913NGJ/, /files/ENCFF556JUK/, /files/ENCFF479RCH/ 743930791 Kevin White, UChicago 11fd72670b5236509dc82b521b926dbd https://www.encodeproject.org/files/ENCFF795BKT/@@download/ENCFF795BKT.bam released s3://encode-public/2018/08/08/aaf7ae33-a7a1-4b9b-92f1-23ecf10b2125/ENCFF795BKT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF087ORZ bigWig bigWig read-depth normalized signal dm6 ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF795BKT/ 17613732 Kevin White, UChicago 817a643389745cf578055e42828a09a6 https://www.encodeproject.org/files/ENCFF087ORZ/@@download/ENCFF087ORZ.bigWig released s3://encode-public/2018/08/08/47995656-08ff-445d-828e-461813d32d54/ENCFF087ORZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF601REL bigWig bigWig signal of unique reads dm6 ENCSR310QLH Control ChIP-seq /fly-donors/ENCDO678ZVV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38700/'], '@type': ['Target', 'Item'], 'name': 'Ets65A-dmelanogaster', 'label': 'Ets65A', '@id': '/targets/Ets65A-dmelanogaster/', 'title': 'Ets65A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c88626c7-0b66-48a2-9925-c49efb7dbd23', 'status': 'released'} dm3 3L 6083178 6157292 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF795BKT/ 17548846 Kevin White, UChicago 40efa092a15d027eb0fc3d63262f7205 https://www.encodeproject.org/files/ENCFF601REL/@@download/ENCFF601REL.bigWig released s3://encode-public/2018/08/08/309246e0-071c-46d8-a307-9dfe491fd065/ENCFF601REL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF094ZKQ fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 299473759 Bradley Bernstein, Broad a29b65cda16be2b478888465415b8785 SRA:SRR14638450 https://www.encodeproject.org/files/ENCFF094ZKQ/@@download/ENCFF094ZKQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/036b6db0-0dcb-4494-adbd-06a069bd1b21/ENCFF094ZKQ.fastq.gz ENCFF804WDX fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 307364088 Bradley Bernstein, Broad b5993db17065d2b2bfa369f1233f2a08 SRA:SRR14638451 https://www.encodeproject.org/files/ENCFF804WDX/@@download/ENCFF804WDX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/5fef1b96-e2b4-4a06-87e2-22a3aa869e6b/ENCFF804WDX.fastq.gz ENCFF845XRF fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 517492960 Bradley Bernstein, Broad f6078d77f00e401e3f5d0c7b87d42192 SRA:SRR14638446 https://www.encodeproject.org/files/ENCFF845XRF/@@download/ENCFF845XRF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/c7bc9f2d-ed35-4baa-aee3-87f1f0cf7276/ENCFF845XRF.fastq.gz ENCFF540KFW fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 521165238 Bradley Bernstein, Broad 47bf3f20f94317e030c2b0f303bf6563 SRA:SRR14638447 https://www.encodeproject.org/files/ENCFF540KFW/@@download/ENCFF540KFW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/b15665fa-3368-4bc2-97ef-8dd98c85a76d/ENCFF540KFW.fastq.gz ENCFF350EDF fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 296762928 Bradley Bernstein, Broad a6833996bba4f32f33f41563098a92bb SRA:SRR14638452 https://www.encodeproject.org/files/ENCFF350EDF/@@download/ENCFF350EDF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/876400f7-7479-48a6-b4fc-4c6b66494a6b/ENCFF350EDF.fastq.gz ENCFF737CJG fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 525529854 Bradley Bernstein, Broad 14e7dd760c5092a37ae5724e5de54a10 SRA:SRR14638448 https://www.encodeproject.org/files/ENCFF737CJG/@@download/ENCFF737CJG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/440212dc-5fb4-4d26-9c29-8aae9cad4277/ENCFF737CJG.fastq.gz ENCFF877CYX fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 521854568 Bradley Bernstein, Broad ab31cdad49665d388acf77a35c7b9d8a SRA:SRR14638449 https://www.encodeproject.org/files/ENCFF877CYX/@@download/ENCFF877CYX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/2ff9fcab-88c7-4d66-ba15-d27226df6169/ENCFF877CYX.fastq.gz ENCFF321LHC fastq fastq reads ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 300498656 Bradley Bernstein, Broad 1e2a241b45307c83b05d0197bf235e4d SRA:SRR14638453 https://www.encodeproject.org/files/ENCFF321LHC/@@download/ENCFF321LHC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/9ff7e496-80b8-4945-b731-c89a41d90b2e/ENCFF321LHC.fastq.gz ENCFF607EWS bam bam unfiltered alignments GRCh38 ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF877CYX/, /files/ENCFF737CJG/, /files/ENCFF094ZKQ/, /files/ENCFF845XRF/, /files/ENCFF350EDF/, /files/ENCFF540KFW/, /files/ENCFF110MCL/, /files/ENCFF321LHC/, /files/ENCFF804WDX/ 3289671742 ENCODE Processing Pipeline 7a38231f6ac6d1d8c2673ac6060965d0 https://www.encodeproject.org/files/ENCFF607EWS/@@download/ENCFF607EWS.bam released s3://encode-public/2021/04/09/1c0459df-4ac1-4c50-bfce-5d30f81e85f2/ENCFF607EWS.bam ENCODE4 v1.8.0 GRCh38 released ENCFF983MVP bam bam alignments GRCh38 ENCSR376YUP Control ChIP-seq /human-donors/ENCDO940VNT/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF877CYX/, /files/ENCFF737CJG/, /files/ENCFF094ZKQ/, /files/ENCFF845XRF/, /files/ENCFF350EDF/, /files/ENCFF540KFW/, /files/ENCFF110MCL/, /files/ENCFF321LHC/, /files/ENCFF804WDX/ 2678492940 ENCODE Processing Pipeline 4d41aec130bf8a2f38d3dd6555bf0ac2 https://www.encodeproject.org/files/ENCFF983MVP/@@download/ENCFF983MVP.bam released s3://encode-public/2021/04/09/1933037f-9318-4570-8bd8-ff6bc3943f73/ENCFF983MVP.bam ENCODE4 v1.8.0 GRCh38 released ENCFF786BQZ fastq fastq reads ENCSR890EWP Control ChIP-seq /fly-donors/ENCDO850YTM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3771985/'], '@type': ['Target', 'Item'], 'name': 'Pif1B-dmelanogaster', 'label': 'Pif1B', '@id': '/targets/Pif1B-dmelanogaster/', 'title': 'Pif1B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2515ec05-bf93-47bf-8fc4-c2664559a41d', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 389134370 Kevin White, UChicago 25618f2722fce7874f417d5f3c0e49c2 https://www.encodeproject.org/files/ENCFF786BQZ/@@download/ENCFF786BQZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/6dfb1072-e14a-4554-b6b8-be3646642903/ENCFF786BQZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF407PGW bam bam alignments dm3 ENCSR890EWP Control ChIP-seq /fly-donors/ENCDO850YTM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3771985/'], '@type': ['Target', 'Item'], 'name': 'Pif1B-dmelanogaster', 'label': 'Pif1B', '@id': '/targets/Pif1B-dmelanogaster/', 'title': 'Pif1B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2515ec05-bf93-47bf-8fc4-c2664559a41d', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF786BQZ/ 568831771 Kevin White, UChicago 0bccfcd04d0eca534204f08e79bed47d https://www.encodeproject.org/files/ENCFF407PGW/@@download/ENCFF407PGW.bam released s3://encode-public/2015/08/05/56609f3e-a62e-4f04-8d15-b0067f70136a/ENCFF407PGW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF064WRP bigWig bigWig read-depth normalized signal dm3 ENCSR890EWP Control ChIP-seq /fly-donors/ENCDO850YTM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3771985/'], '@type': ['Target', 'Item'], 'name': 'Pif1B-dmelanogaster', 'label': 'Pif1B', '@id': '/targets/Pif1B-dmelanogaster/', 'title': 'Pif1B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2515ec05-bf93-47bf-8fc4-c2664559a41d', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF407PGW/ 15068976 Kevin White, UChicago 45df0d0762561dabe25263eb1c512f5a https://www.encodeproject.org/files/ENCFF064WRP/@@download/ENCFF064WRP.bigWig released s3://encode-public/2015/10/05/a7ca7050-148b-4a58-af38-4e9f0147f5f5/ENCFF064WRP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF358PTJ bigWig bigWig signal of unique reads dm3 ENCSR890EWP Control ChIP-seq /fly-donors/ENCDO850YTM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3771985/'], '@type': ['Target', 'Item'], 'name': 'Pif1B-dmelanogaster', 'label': 'Pif1B', '@id': '/targets/Pif1B-dmelanogaster/', 'title': 'Pif1B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2515ec05-bf93-47bf-8fc4-c2664559a41d', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF407PGW/ 15061109 Kevin White, UChicago 90d446f58e1c571951cf85a1a0c04e55 https://www.encodeproject.org/files/ENCFF358PTJ/@@download/ENCFF358PTJ.bigWig released s3://encode-public/2015/10/05/caec46fe-444a-4edf-b87f-a5dc781d1c24/ENCFF358PTJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF596HFA bam bam alignments dm6 ENCSR890EWP Control ChIP-seq /fly-donors/ENCDO850YTM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3771985/'], '@type': ['Target', 'Item'], 'name': 'Pif1B-dmelanogaster', 'label': 'Pif1B', '@id': '/targets/Pif1B-dmelanogaster/', 'title': 'Pif1B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2515ec05-bf93-47bf-8fc4-c2664559a41d', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF786BQZ/ 567328738 Kevin White, UChicago b4d6102ebffce0f9b7daf39a727073de https://www.encodeproject.org/files/ENCFF596HFA/@@download/ENCFF596HFA.bam released s3://encode-public/2016/04/22/5a2b19e1-7f17-476f-9e6a-974a281c9716/ENCFF596HFA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF877SGR bigWig bigWig signal of unique reads dm6 ENCSR890EWP Control ChIP-seq /fly-donors/ENCDO850YTM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3771985/'], '@type': ['Target', 'Item'], 'name': 'Pif1B-dmelanogaster', 'label': 'Pif1B', '@id': '/targets/Pif1B-dmelanogaster/', 'title': 'Pif1B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2515ec05-bf93-47bf-8fc4-c2664559a41d', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF596HFA/ 17120776 Kevin White, UChicago e6fce153420d2bc83e88077d9e47790c https://www.encodeproject.org/files/ENCFF877SGR/@@download/ENCFF877SGR.bigWig released s3://encode-public/2016/06/21/eb693e68-5f39-40d7-b7a4-fbc28e009f34/ENCFF877SGR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF341LKV bigWig bigWig read-depth normalized signal dm6 ENCSR890EWP Control ChIP-seq /fly-donors/ENCDO850YTM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3771985/'], '@type': ['Target', 'Item'], 'name': 'Pif1B-dmelanogaster', 'label': 'Pif1B', '@id': '/targets/Pif1B-dmelanogaster/', 'title': 'Pif1B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2515ec05-bf93-47bf-8fc4-c2664559a41d', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF596HFA/ 17116352 Kevin White, UChicago a1b8610c7d3d4648a92fd29b7b05e154 https://www.encodeproject.org/files/ENCFF341LKV/@@download/ENCFF341LKV.bigWig released s3://encode-public/2016/06/21/44d2cee6-b2c9-40c7-b8bc-2de6645dd32d/ENCFF341LKV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF603HLG fastq fastq reads ENCSR564PVU Control ChIP-seq /fly-donors/ENCDO482IKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43160/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m7-HLH-dmelanogaster', 'label': 'E(spl)m7-HLH', '@id': '/targets/E(spl)m7-HLH-dmelanogaster/', 'title': 'E(spl)m7-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aa496a9e-84c6-4c07-b205-013192c360f6', 'status': 'released'} dm3 3R 21852818 21873561 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 617036820 Kevin White, UChicago b6f14cff792f98544d6ebff062f31794 https://www.encodeproject.org/files/ENCFF603HLG/@@download/ENCFF603HLG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/a7493d8a-4547-4f91-8374-b311c56a9f9e/ENCFF603HLG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF616TJT bam bam alignments dm3 ENCSR564PVU Control ChIP-seq /fly-donors/ENCDO482IKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43160/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m7-HLH-dmelanogaster', 'label': 'E(spl)m7-HLH', '@id': '/targets/E(spl)m7-HLH-dmelanogaster/', 'title': 'E(spl)m7-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aa496a9e-84c6-4c07-b205-013192c360f6', 'status': 'released'} dm3 3R 21852818 21873561 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF603HLG/ 751942696 Kevin White, UChicago ed61d95faba8803e99ac5b9a2b1e0f96 https://www.encodeproject.org/files/ENCFF616TJT/@@download/ENCFF616TJT.bam released s3://encode-public/2015/08/05/9d84873a-6653-46af-a147-dc7bdf646184/ENCFF616TJT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF618ZQJ bam bam alignments dm6 ENCSR564PVU Control ChIP-seq /fly-donors/ENCDO482IKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43160/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m7-HLH-dmelanogaster', 'label': 'E(spl)m7-HLH', '@id': '/targets/E(spl)m7-HLH-dmelanogaster/', 'title': 'E(spl)m7-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aa496a9e-84c6-4c07-b205-013192c360f6', 'status': 'released'} dm3 3R 21852818 21873561 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF603HLG/ 749254208 Kevin White, UChicago d0d429b720a444f71f8f1d98b330c21a https://www.encodeproject.org/files/ENCFF618ZQJ/@@download/ENCFF618ZQJ.bam released s3://encode-public/2016/04/21/3fd6a424-6771-4813-a489-6349494c0a74/ENCFF618ZQJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF426PSN bigWig bigWig read-depth normalized signal dm6 ENCSR564PVU Control ChIP-seq /fly-donors/ENCDO482IKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43160/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m7-HLH-dmelanogaster', 'label': 'E(spl)m7-HLH', '@id': '/targets/E(spl)m7-HLH-dmelanogaster/', 'title': 'E(spl)m7-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aa496a9e-84c6-4c07-b205-013192c360f6', 'status': 'released'} dm3 3R 21852818 21873561 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF618ZQJ/ 17465678 Kevin White, UChicago 1172a7ad0d08f249e500c47fca56f807 https://www.encodeproject.org/files/ENCFF426PSN/@@download/ENCFF426PSN.bigWig released s3://encode-public/2016/07/02/cf9f06eb-1eec-4e1f-b03e-10afb2a6eaaa/ENCFF426PSN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF725NQW bigWig bigWig signal of unique reads dm6 ENCSR564PVU Control ChIP-seq /fly-donors/ENCDO482IKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43160/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m7-HLH-dmelanogaster', 'label': 'E(spl)m7-HLH', '@id': '/targets/E(spl)m7-HLH-dmelanogaster/', 'title': 'E(spl)m7-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aa496a9e-84c6-4c07-b205-013192c360f6', 'status': 'released'} dm3 3R 21852818 21873561 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF618ZQJ/ 17413596 Kevin White, UChicago 69c2fe11c27304def17941dbf74d2735 https://www.encodeproject.org/files/ENCFF725NQW/@@download/ENCFF725NQW.bigWig released s3://encode-public/2016/07/02/b79e8fde-d9be-46f6-975e-73b0e6c3cf38/ENCFF725NQW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF380OGK bigWig bigWig signal of unique reads dm3 ENCSR564PVU Control ChIP-seq /fly-donors/ENCDO482IKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43160/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m7-HLH-dmelanogaster', 'label': 'E(spl)m7-HLH', '@id': '/targets/E(spl)m7-HLH-dmelanogaster/', 'title': 'E(spl)m7-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aa496a9e-84c6-4c07-b205-013192c360f6', 'status': 'released'} dm3 3R 21852818 21873561 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF616TJT/ 15300510 Kevin White, UChicago 4eafad42f5b30068be99869f8d9c43b5 https://www.encodeproject.org/files/ENCFF380OGK/@@download/ENCFF380OGK.bigWig released s3://encode-public/2016/07/02/a20a4eec-1b7d-4605-b3c5-66594a734b0c/ENCFF380OGK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF675AJE bigWig bigWig read-depth normalized signal dm3 ENCSR564PVU Control ChIP-seq /fly-donors/ENCDO482IKP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43160/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m7-HLH-dmelanogaster', 'label': 'E(spl)m7-HLH', '@id': '/targets/E(spl)m7-HLH-dmelanogaster/', 'title': 'E(spl)m7-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aa496a9e-84c6-4c07-b205-013192c360f6', 'status': 'released'} dm3 3R 21852818 21873561 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF616TJT/ 15341082 Kevin White, UChicago fba8028e840709acb9ee23bea9fc6b72 https://www.encodeproject.org/files/ENCFF675AJE/@@download/ENCFF675AJE.bigWig released s3://encode-public/2016/07/02/b5b2ccb7-ae93-43bd-9384-85a120faa6b8/ENCFF675AJE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF467WDT bam bam redacted unfiltered alignments GRCh38 ENCSR367NSM Control ChIP-seq /human-donors/ENCDO544NAV/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF410NDJ/, /files/ENCFF643CGH/ 645490055 ENCODE Processing Pipeline e3048abbc2956e0b352f2d7e5302b7da https://www.encodeproject.org/files/ENCFF467WDT/@@download/ENCFF467WDT.bam released s3://encode-public/2018/01/18/00099c74-3b63-492a-b8e2-0cc520a3a1dd/ENCFF467WDT.bam ENCODE3 GRCh38 archived low read length ENCFF288IRL bam bam redacted alignments GRCh38 ENCSR367NSM Control ChIP-seq /human-donors/ENCDO544NAV/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF410NDJ/, /files/ENCFF643CGH/ 447186819 ENCODE Processing Pipeline b3114ea8100e115796550109635c02c3 https://www.encodeproject.org/files/ENCFF288IRL/@@download/ENCFF288IRL.bam released s3://encode-public/2018/01/18/c431f0c4-65c2-4a2a-9dca-7a18709c49d8/ENCFF288IRL.bam ENCODE3 GRCh38 archived low read length ENCFF122AXG bam bam redacted alignments hg19 ENCSR367NSM Control ChIP-seq /human-donors/ENCDO544NAV/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF410NDJ/, /files/ENCFF807MUK/ 447138595 ENCODE Processing Pipeline b5bd21b385d756d3c9a879e22ce8c9b7 https://www.encodeproject.org/files/ENCFF122AXG/@@download/ENCFF122AXG.bam released s3://encode-public/2018/01/19/f71cc681-2cc4-4534-9389-51efbc6ff41d/ENCFF122AXG.bam ENCODE3 hg19 archived low read length ENCFF948VRS bam bam redacted unfiltered alignments hg19 ENCSR367NSM Control ChIP-seq /human-donors/ENCDO544NAV/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF410NDJ/, /files/ENCFF807MUK/ 638936804 ENCODE Processing Pipeline 312b116171a8149fc20f3de79cb123fd https://www.encodeproject.org/files/ENCFF948VRS/@@download/ENCFF948VRS.bam released s3://encode-public/2018/01/19/d6401fc2-5e10-48cb-8930-490513430372/ENCFF948VRS.bam ENCODE3 hg19 archived low read length ENCFF937DII bam bam redacted alignments GRCh38 ENCSR367NSM Control ChIP-seq /human-donors/ENCDO544NAV/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF410NDJ/ 1425811872 ENCODE Processing Pipeline 907e6138acb880e559a4b4cbe9f3c10e https://www.encodeproject.org/files/ENCFF937DII/@@download/ENCFF937DII.bam released s3://encode-public/2021/01/27/02ef3f7d-448c-4fa2-94c6-7b3f0da56d05/ENCFF937DII.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF082YHB tagAlign tagAlign alignments hg19 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF342ZXR/, /files/ENCFF700UWP/, /files/ENCFF911DBY/, /files/ENCFF121KFB/ 101329272 Anshul Kundaje, Stanford b850db6f21d5d3f4523889bd78b95e52 https://www.encodeproject.org/files/ENCFF082YHB/@@download/ENCFF082YHB.tagAlign.gz archived s3://encode-public/2016/03/30/98b897a0-1809-4cb8-9790-596097551094/ENCFF082YHB.tagAlign.gz Lab custom hg19 archived low read length ENCFF121KFB fastq fastq reads ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 685524071 Zhiping Weng, UMass c95f69eb74c931d633a706217d920bd9 SRA:SRR1067408 https://www.encodeproject.org/files/ENCFF121KFB/@@download/ENCFF121KFB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/00f80a2c-d4d4-4799-9407-817fbeb3917b/ENCFF121KFB.fastq.gz low read length ENCFF911DBY fastq fastq reads ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 312337210 Zhiping Weng, UMass fef2bf323967e6245ed6f85984c05d1e SRA:SRR1067366 https://www.encodeproject.org/files/ENCFF911DBY/@@download/ENCFF911DBY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/22ab8c93-3cf4-4eeb-8f4c-7dad48ec5221/ENCFF911DBY.fastq.gz low read length ENCFF342ZXR fastq fastq reads ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 150145736 Zhiping Weng, UMass 1472e11982d78169d7e3e9d233f9e2fa SRA:SRR1067175 https://www.encodeproject.org/files/ENCFF342ZXR/@@download/ENCFF342ZXR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/caf71a6c-07e4-4012-9bfd-8ca5fcd4c411/ENCFF342ZXR.fastq.gz low read length ENCFF700UWP fastq fastq reads ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 317202262 Zhiping Weng, UMass 7a36b2af530a04b404e76ac89845dce6 SRA:SRR1067255 https://www.encodeproject.org/files/ENCFF700UWP/@@download/ENCFF700UWP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/6463c6db-4c26-4f3a-86b4-e3984521c017/ENCFF700UWP.fastq.gz low read length ENCFF549GPL bam bam unfiltered alignments GRCh38 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF342ZXR/, /files/ENCFF700UWP/, /files/ENCFF643CGH/, /files/ENCFF911DBY/, /files/ENCFF121KFB/ 1746468355 ENCODE Processing Pipeline 2082dd1b7cb305196680851e0d5c9dd5 https://www.encodeproject.org/files/ENCFF549GPL/@@download/ENCFF549GPL.bam released s3://encode-public/2016/12/19/ee1117fd-61e2-4c9e-826b-ac8fa4725398/ENCFF549GPL.bam ENCODE3 GRCh38 archived low read length ENCFF099UBE bam bam unfiltered alignments hg19 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF342ZXR/, /files/ENCFF700UWP/, /files/ENCFF807MUK/, /files/ENCFF911DBY/, /files/ENCFF121KFB/ 1730324695 ENCODE Processing Pipeline 006eb6a02b72b3edfebe9662a9d6eb08 https://www.encodeproject.org/files/ENCFF099UBE/@@download/ENCFF099UBE.bam released s3://encode-public/2016/12/19/12594d2c-1069-487b-847c-bc5158208345/ENCFF099UBE.bam ENCODE3 hg19 archived low read length ENCFF115XCR bam bam alignments GRCh38 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF342ZXR/, /files/ENCFF700UWP/, /files/ENCFF643CGH/, /files/ENCFF911DBY/, /files/ENCFF121KFB/ 1245661045 ENCODE Processing Pipeline eed95b27cc4d1bc22585abe364f8191f https://www.encodeproject.org/files/ENCFF115XCR/@@download/ENCFF115XCR.bam released s3://encode-public/2016/12/19/7f028560-052f-494c-a23e-f5272070f52f/ENCFF115XCR.bam ENCODE3 GRCh38 archived low read length ENCFF265MHA bam bam alignments hg19 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF342ZXR/, /files/ENCFF700UWP/, /files/ENCFF807MUK/, /files/ENCFF911DBY/, /files/ENCFF121KFB/ 1245907516 ENCODE Processing Pipeline 76fad7f5c71b42e16bf25aa09cd43163 https://www.encodeproject.org/files/ENCFF265MHA/@@download/ENCFF265MHA.bam released s3://encode-public/2016/12/19/ae374637-9bb5-481b-8474-b4c5a3533ea3/ENCFF265MHA.bam ENCODE3 hg19 archived low read length ENCFF635ADK tagAlign tagAlign alignments hg19 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF749YQA/, /files/ENCFF484CVX/ 189686313 Anshul Kundaje, Stanford 5f222d0e146a5cc33596266f8c3066c1 https://www.encodeproject.org/files/ENCFF635ADK/@@download/ENCFF635ADK.tagAlign.gz archived s3://encode-public/2016/03/30/15613cb0-72b0-4882-9fa5-2604fa526c52/ENCFF635ADK.tagAlign.gz Lab custom hg19 archived low read length ENCFF410NYZ bam bam redacted unfiltered alignments hg19 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF484CVX/, /files/ENCFF807MUK/, /files/ENCFF749YQA/ 590988096 ENCODE Processing Pipeline b68f636a446938cbd6afc43f9f1423cf https://www.encodeproject.org/files/ENCFF410NYZ/@@download/ENCFF410NYZ.bam released s3://encode-public/2018/01/19/977ed15b-761a-4931-bd01-c7c4246f1410/ENCFF410NYZ.bam ENCODE3 hg19 archived low read length ENCFF163SPB bam bam redacted unfiltered alignments GRCh38 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF484CVX/, /files/ENCFF749YQA/, /files/ENCFF643CGH/ 599976596 ENCODE Processing Pipeline 4d5fb27702f447852a0d8ea17189186f https://www.encodeproject.org/files/ENCFF163SPB/@@download/ENCFF163SPB.bam released s3://encode-public/2018/01/19/42109474-fd6c-46cc-bca5-07f8f0b42b7f/ENCFF163SPB.bam ENCODE3 GRCh38 archived low read length ENCFF528AGJ bam bam redacted alignments hg19 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF484CVX/, /files/ENCFF807MUK/, /files/ENCFF749YQA/ 383723477 ENCODE Processing Pipeline 0a49d45778f7e2dce29f8406b8d34f7a https://www.encodeproject.org/files/ENCFF528AGJ/@@download/ENCFF528AGJ.bam released s3://encode-public/2018/01/19/6e186a96-e4c7-4eab-9ae7-e640bd1de6d3/ENCFF528AGJ.bam ENCODE3 hg19 archived low read length ENCFF583UWD bam bam redacted alignments GRCh38 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF484CVX/, /files/ENCFF749YQA/, /files/ENCFF643CGH/ 383925492 ENCODE Processing Pipeline b4cb238906884e00e3100bf705a815cc https://www.encodeproject.org/files/ENCFF583UWD/@@download/ENCFF583UWD.bam released s3://encode-public/2018/01/19/823698e0-fe9d-4a95-82dd-95849a9c1aac/ENCFF583UWD.bam ENCODE3 GRCh38 archived low read length ENCFF912XUR bam bam redacted alignments GRCh38 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF484CVX/, /files/ENCFF110MCL/, /files/ENCFF749YQA/ 1268327004 ENCODE Processing Pipeline 35538113a917ecde4c5fb6fe65a95a04 https://www.encodeproject.org/files/ENCFF912XUR/@@download/ENCFF912XUR.bam released s3://encode-public/2021/01/27/a163e7c7-cc6e-4079-b336-5dc1441a65f1/ENCFF912XUR.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF573BIU bam bam redacted alignments GRCh38 ENCSR595SMV Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF121KFB/, /files/ENCFF110MCL/, /files/ENCFF911DBY/, /files/ENCFF700UWP/, /files/ENCFF342ZXR/ 1358952902 ENCODE Processing Pipeline 39d6af97f6ac406248e4ad70fc1f5397 https://www.encodeproject.org/files/ENCFF573BIU/@@download/ENCFF573BIU.bam released s3://encode-public/2021/01/27/b614a243-9517-468e-9411-c879bec17586/ENCFF573BIU.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF537JGM tagAlign tagAlign alignments hg19 ENCSR770OIC Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/SRR1270528/, /files/SRR1270543/, /files/SRR1270542/ 132303476 Anshul Kundaje, Stanford e781bbdcc7a89d73c00c499a6a8e0113 https://www.encodeproject.org/files/ENCFF537JGM/@@download/ENCFF537JGM.tagAlign.gz archived s3://encode-public/2016/03/30/2d479a0d-1cde-4602-b275-0c9f53cd7639/ENCFF537JGM.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF104FCD bam bam redacted unfiltered alignments GRCh38 ENCSR770OIC Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF808XNU/, /files/ENCFF579LXQ/, /files/ENCFF643CGH/, /files/ENCFF061KLJ/ 293971348 ENCODE Processing Pipeline cbe215fcedb9a6031bde6c1d2f5e392c https://www.encodeproject.org/files/ENCFF104FCD/@@download/ENCFF104FCD.bam archived s3://encode-public/2017/10/16/f78257c1-6426-43a0-a022-756056fd9cc0/ENCFF104FCD.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF018JTJ bam bam redacted alignments GRCh38 ENCSR770OIC Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF808XNU/, /files/ENCFF579LXQ/, /files/ENCFF643CGH/, /files/ENCFF061KLJ/ 159712317 ENCODE Processing Pipeline db05c4b329cc78022991b7981208a991 https://www.encodeproject.org/files/ENCFF018JTJ/@@download/ENCFF018JTJ.bam archived s3://encode-public/2017/10/16/862b485b-5799-4135-a527-fd2594177bb7/ENCFF018JTJ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF841IUK bam bam redacted alignments hg19 ENCSR770OIC Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF808XNU/, /files/ENCFF579LXQ/, /files/ENCFF807MUK/, /files/ENCFF061KLJ/ 116593351 ENCODE Processing Pipeline 65a11df7f6890280313865a4712dd2d0 https://www.encodeproject.org/files/ENCFF841IUK/@@download/ENCFF841IUK.bam archived s3://encode-public/2018/01/20/ace16da4-9cab-482c-b53f-1a2d0b1364c2/ENCFF841IUK.bam ENCODE3 hg19 archived low read depth, low read length ENCFF393NMU bam bam redacted unfiltered alignments hg19 ENCSR770OIC Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002038 substantia nigra tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF808XNU/, /files/ENCFF579LXQ/, /files/ENCFF807MUK/, /files/ENCFF061KLJ/ 177725063 ENCODE Processing Pipeline 49693adcc575ee200c385f78d77d4afc https://www.encodeproject.org/files/ENCFF393NMU/@@download/ENCFF393NMU.bam archived s3://encode-public/2018/01/20/2fc117c9-a8e4-47ef-93a7-5c21c0541582/ENCFF393NMU.bam 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ENCSR759EUL Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_1 50 /files/ENCFF110MCL/, /files/ENCFF570HOL/ 1785008095 ENCODE Processing Pipeline 932007fa0daca86e09dfbfde92e3f9e3 https://www.encodeproject.org/files/ENCFF443XIE/@@download/ENCFF443XIE.bam released s3://encode-public/2020/10/27/1f172362-8319-4a03-a71c-b455fbea4cb8/ENCFF443XIE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF836LXK fastq fastq reads ENCSR097GQQ Control ChIP-seq /fly-donors/ENCDO772AVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37471/'], '@type': ['Target', 'Item'], 'name': 'NC2α-dmelanogaster', 'label': 'NC2α', '@id': '/targets/NC2%CE%B1-dmelanogaster/', 'title': 'NC2α (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22532452-b122-4cad-9e1f-9e12ddd9eafc', 'status': 'released'} dm3 2R 17553880 17573057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 578050392 Kevin White, UChicago 3ab2860f9933c1d0a94edd54e2f4a044 https://www.encodeproject.org/files/ENCFF836LXK/@@download/ENCFF836LXK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/acc00c00-329c-4772-b649-5897672b16f0/ENCFF836LXK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF687BSO bam bam alignments dm3 ENCSR097GQQ Control ChIP-seq /fly-donors/ENCDO772AVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': 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characterization ENCFF330CVU bigWig bigWig read-depth normalized signal dm3 ENCSR097GQQ Control ChIP-seq /fly-donors/ENCDO772AVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37471/'], '@type': ['Target', 'Item'], 'name': 'NC2α-dmelanogaster', 'label': 'NC2α', '@id': '/targets/NC2%CE%B1-dmelanogaster/', 'title': 'NC2α (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22532452-b122-4cad-9e1f-9e12ddd9eafc', 'status': 'released'} dm3 2R 17553880 17573057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF687BSO/ 15374806 Kevin White, UChicago 49146faf2706f2cfd2e1c4dbb6cff2ff https://www.encodeproject.org/files/ENCFF330CVU/@@download/ENCFF330CVU.bigWig released s3://encode-public/2015/10/06/8000e380-b223-4b3c-9eaa-ec0d58303824/ENCFF330CVU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF806ORI bigWig bigWig signal of unique reads dm3 ENCSR097GQQ Control ChIP-seq /fly-donors/ENCDO772AVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37471/'], '@type': ['Target', 'Item'], 'name': 'NC2α-dmelanogaster', 'label': 'NC2α', '@id': '/targets/NC2%CE%B1-dmelanogaster/', 'title': 'NC2α (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22532452-b122-4cad-9e1f-9e12ddd9eafc', 'status': 'released'} dm3 2R 17553880 17573057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF687BSO/ 15337969 Kevin White, UChicago 1145528d32bc23275bd6b8493469c7f3 https://www.encodeproject.org/files/ENCFF806ORI/@@download/ENCFF806ORI.bigWig released s3://encode-public/2015/10/06/a0ba513c-3e74-44d3-9b58-813f9bfaa48a/ENCFF806ORI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF736UWK bam bam alignments dm6 ENCSR097GQQ Control ChIP-seq /fly-donors/ENCDO772AVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37471/'], '@type': ['Target', 'Item'], 'name': 'NC2α-dmelanogaster', 'label': 'NC2α', '@id': '/targets/NC2%CE%B1-dmelanogaster/', 'title': 'NC2α (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22532452-b122-4cad-9e1f-9e12ddd9eafc', 'status': 'released'} dm3 2R 17553880 17573057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF736UWK/ 17441644 Kevin White, UChicago 7416331cd44ccd04d8dd1a9b25e23a27 https://www.encodeproject.org/files/ENCFF751RQW/@@download/ENCFF751RQW.bigWig released s3://encode-public/2016/06/20/d0cde01c-dfba-4edd-aaf4-6226e26856fe/ENCFF751RQW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF496PWG bigWig bigWig read-depth normalized signal dm6 ENCSR097GQQ Control ChIP-seq /fly-donors/ENCDO772AVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37471/'], '@type': ['Target', 'Item'], 'name': 'NC2α-dmelanogaster', 'label': 'NC2α', '@id': '/targets/NC2%CE%B1-dmelanogaster/', 'title': 'NC2α (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 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GRCh38 released ENCFF902XQU bam bam alignments GRCh38 ENCSR822YWX Control ChIP-seq /human-donors/ENCDO845GYA/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF159TWI/, /files/ENCFF985XSE/, /files/ENCFF958IKV/, /files/ENCFF296TCS/, /files/ENCFF110MCL/, /files/ENCFF732PUT/, /files/ENCFF934ZGH/, /files/ENCFF962VPS/, /files/ENCFF371FMJ/ 2721824394 ENCODE Processing Pipeline bd9e3ddcdd0044c532bece1a0fb20163 https://www.encodeproject.org/files/ENCFF902XQU/@@download/ENCFF902XQU.bam released s3://encode-public/2021/04/09/ea710972-95af-49d3-bca1-0f1c3d6e68cb/ENCFF902XQU.bam ENCODE4 v1.8.0 GRCh38 released ENCFF230SCC fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 403237539 Bradley Bernstein, Broad d63aeb1791314d49617d91de795b6cf7 SRA:SRR14638499 https://www.encodeproject.org/files/ENCFF230SCC/@@download/ENCFF230SCC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/3ec7f8df-0bf4-4f18-adf6-85d2a3081a8a/ENCFF230SCC.fastq.gz ENCFF802YQP fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 400287545 Bradley Bernstein, Broad f17bfea0a4783bc785f317ea7b80fb80 SRA:SRR14638500 https://www.encodeproject.org/files/ENCFF802YQP/@@download/ENCFF802YQP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/98c2eacd-3355-4ddb-84e0-2a7e41d3fb80/ENCFF802YQP.fastq.gz ENCFF394JRB fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 408403991 Bradley Bernstein, Broad d15f9ffffa59837302bbe5fecf4bf87d SRA:SRR14638501 https://www.encodeproject.org/files/ENCFF394JRB/@@download/ENCFF394JRB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/12c39b7d-de40-4af7-95f4-ac95f3b1fabe/ENCFF394JRB.fastq.gz ENCFF368BBG fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 416682908 Bradley Bernstein, Broad 91e4e9ab990fef7f0e19335a86b68c14 SRA:SRR14638502 https://www.encodeproject.org/files/ENCFF368BBG/@@download/ENCFF368BBG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/693aa737-3698-431d-94bf-19fe713034ad/ENCFF368BBG.fastq.gz ENCFF935UMC fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 548086899 Bradley Bernstein, Broad 5ea6500a3402922f747252d14e53493a SRA:SRR14638503 https://www.encodeproject.org/files/ENCFF935UMC/@@download/ENCFF935UMC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/eb3867bf-7d60-4ddd-8443-bb6901920025/ENCFF935UMC.fastq.gz ENCFF713PEH fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 536149454 Bradley Bernstein, Broad cf4c64cc92b83f4fc0da36adb457be88 SRA:SRR14638504 https://www.encodeproject.org/files/ENCFF713PEH/@@download/ENCFF713PEH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/2f26f7c2-b9ef-49e8-9fc0-e8b2a957b6b6/ENCFF713PEH.fastq.gz ENCFF053EZC fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 538986059 Bradley Bernstein, Broad 99fadf9bbe7c4cfaa1595c01748ac0cd SRA:SRR14638505 https://www.encodeproject.org/files/ENCFF053EZC/@@download/ENCFF053EZC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/711e80f6-fb70-49ed-abf9-c2b940be1378/ENCFF053EZC.fastq.gz ENCFF268TTB fastq fastq reads ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 543097059 Bradley Bernstein, Broad f1c1c5509a91c65df0752b8bb645ef23 SRA:SRR14638506 https://www.encodeproject.org/files/ENCFF268TTB/@@download/ENCFF268TTB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/7d258a34-9167-4a3c-b198-809930068ceb/ENCFF268TTB.fastq.gz ENCFF524GWY bam bam unfiltered alignments GRCh38 ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF713PEH/, /files/ENCFF268TTB/, /files/ENCFF394JRB/, /files/ENCFF935UMC/, /files/ENCFF053EZC/, /files/ENCFF368BBG/, /files/ENCFF230SCC/, /files/ENCFF802YQP/, /files/ENCFF110MCL/ 3727006115 ENCODE Processing Pipeline 54d1fab499f74b6f15e7b956842011d5 https://www.encodeproject.org/files/ENCFF524GWY/@@download/ENCFF524GWY.bam released s3://encode-public/2021/04/09/92ed0f04-f251-4ad2-b92d-1637c91b3509/ENCFF524GWY.bam ENCODE4 v1.8.0 GRCh38 released ENCFF150VKE bam bam alignments GRCh38 ENCSR394ZWY Control ChIP-seq /human-donors/ENCDO354SJE/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF713PEH/, /files/ENCFF268TTB/, /files/ENCFF394JRB/, /files/ENCFF935UMC/, /files/ENCFF053EZC/, /files/ENCFF368BBG/, /files/ENCFF230SCC/, /files/ENCFF802YQP/, /files/ENCFF110MCL/ 3129162157 ENCODE Processing Pipeline a6c037851321cc2e19626b5acf5f18db https://www.encodeproject.org/files/ENCFF150VKE/@@download/ENCFF150VKE.bam released s3://encode-public/2021/04/09/bebddee4-8719-4f66-8fa9-dc609c4a5967/ENCFF150VKE.bam ENCODE4 v1.8.0 GRCh38 released ENCFF897SUG bam bam redacted unfiltered alignments hg19 ENCSR069UAQ Control ChIP-seq /human-donors/ENCDO498XPV/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF236LCL/, /files/ENCFF866IIG/, /files/ENCFF807MUK/ 503017048 ENCODE Processing Pipeline b0eb1b07d438133431f848042b8fcd38 https://www.encodeproject.org/files/ENCFF897SUG/@@download/ENCFF897SUG.bam released s3://encode-public/2018/01/31/600032f6-3f4a-4034-a6ed-f3077b15cdf0/ENCFF897SUG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF157KPL bam bam redacted unfiltered alignments GRCh38 ENCSR069UAQ Control ChIP-seq /human-donors/ENCDO498XPV/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF236LCL/, /files/ENCFF866IIG/, /files/ENCFF643CGH/ 507974048 ENCODE Processing Pipeline 2d10572137e3201486a3f9ae71df8c73 https://www.encodeproject.org/files/ENCFF157KPL/@@download/ENCFF157KPL.bam released s3://encode-public/2018/01/31/6f9b64fb-a7c5-4964-a13c-797da29e91cf/ENCFF157KPL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF053UXR bam bam redacted alignments hg19 ENCSR069UAQ Control ChIP-seq /human-donors/ENCDO498XPV/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF236LCL/, /files/ENCFF866IIG/, /files/ENCFF807MUK/ 268266530 ENCODE Processing Pipeline b0f646b9ea17827b04a561ff12d95f70 https://www.encodeproject.org/files/ENCFF053UXR/@@download/ENCFF053UXR.bam released s3://encode-public/2018/01/31/24483055-274b-4dd0-97f6-43fa867e6f8c/ENCFF053UXR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF243SOS bam bam redacted alignments GRCh38 ENCSR069UAQ Control ChIP-seq /human-donors/ENCDO498XPV/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF236LCL/, /files/ENCFF866IIG/, /files/ENCFF643CGH/ 268191135 ENCODE Processing Pipeline 8fccda51b453a78f4c35e4fadf20a125 https://www.encodeproject.org/files/ENCFF243SOS/@@download/ENCFF243SOS.bam released s3://encode-public/2018/01/31/e76d7074-e1c9-4750-9595-67edec483cf6/ENCFF243SOS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF251VRA bam bam redacted alignments GRCh38 ENCSR069UAQ Control ChIP-seq /human-donors/ENCDO498XPV/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF866IIG/, /files/ENCFF110MCL/, /files/ENCFF236LCL/ 954946583 ENCODE Processing Pipeline ce76ef0b2ff12465bbecacfd3039e735 https://www.encodeproject.org/files/ENCFF251VRA/@@download/ENCFF251VRA.bam released s3://encode-public/2021/01/28/ef0ff819-dca3-4c4c-b6d1-c6be1550b023/ENCFF251VRA.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF441BJJ fastq fastq reads ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1270481063 Bing Ren, UCSD 3fb992c6501d95ff8c85b317f367a8eb SRA:SRR3651754 https://www.encodeproject.org/files/ENCFF441BJJ/@@download/ENCFF441BJJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/3bd15c83-f7c2-4663-8566-4dd7ccaf25fd/ENCFF441BJJ.fastq.gz inconsistent platforms ENCFF636CUM fastq fastq reads ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2670705841 Bing Ren, UCSD 0f94a5bc596beb2cc11ca757d6aaeb24 SRA:SRR3651756 https://www.encodeproject.org/files/ENCFF636CUM/@@download/ENCFF636CUM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/6d1163ec-2b1b-472a-98da-765c72887b92/ENCFF636CUM.fastq.gz inconsistent platforms ENCFF824WNR fastq fastq reads ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 3620983964 Bing Ren, UCSD d17dc60cff4d0b02abf9e82a05f4c5e5 SRA:SRR3651755 https://www.encodeproject.org/files/ENCFF824WNR/@@download/ENCFF824WNR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/a89d5bbc-207e-4917-b2cd-1090998cc71c/ENCFF824WNR.fastq.gz inconsistent platforms ENCFF081EMS bam bam alignments mm10-minimal ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF806TVZ/, /files/ENCFF824WNR/, /files/ENCFF441BJJ/ 3982097668 ENCODE Processing Pipeline ef56d36fb1a5e440c68fd07987f2cc57 https://www.encodeproject.org/files/ENCFF081EMS/@@download/ENCFF081EMS.bam archived s3://encode-public/2015/10/31/465fa359-a6c3-4fab-b6e3-eee3e836d3cc/ENCFF081EMS.bam inconsistent platforms ENCFF881FJP bam bam alignments mm10-minimal ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF636CUM/, /files/ENCFF806TVZ/ 2280745382 ENCODE Processing Pipeline eda2152ae376bc22017f447cae227c12 https://www.encodeproject.org/files/ENCFF881FJP/@@download/ENCFF881FJP.bam archived s3://encode-public/2015/10/31/c558b1a7-bc5a-4f88-8107-ed9fcdbf0a41/ENCFF881FJP.bam inconsistent platforms ENCFF894XEQ bam bam unfiltered alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF824WNR/, /files/ENCFF441BJJ/ 5848626701 ENCODE Processing Pipeline ee9fb401d25d22e43c3aa6564eebdfb2 https://www.encodeproject.org/files/ENCFF894XEQ/@@download/ENCFF894XEQ.bam released s3://encode-public/2016/05/20/e4b79b3c-7e9d-417e-9592-2f9730c2fdad/ENCFF894XEQ.bam ENCODE3 mm10 archived inconsistent platforms ENCFF634NAV bam bam alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF824WNR/, /files/ENCFF441BJJ/ 3981334614 ENCODE Processing Pipeline 7ddb47b07bf0beca483b22b504878ce3 https://www.encodeproject.org/files/ENCFF634NAV/@@download/ENCFF634NAV.bam released s3://encode-public/2016/05/20/0d8e6690-e7e4-4fcc-8e88-a603ebec22ff/ENCFF634NAV.bam ENCODE3 mm10 archived inconsistent platforms ENCFF905TFJ fastq fastq reads ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 306435172 Bing Ren, UCSD a8a1397b619b7b0110f4b7297e9bcdb1 SRA:SRR3651757 https://www.encodeproject.org/files/ENCFF905TFJ/@@download/ENCFF905TFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/b83f91ee-ddcf-41a5-8156-08a62f6063d9/ENCFF905TFJ.fastq.gz inconsistent platforms ENCFF044KKF bam bam unfiltered alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF636CUM/, /files/ENCFF905TFJ/ 3739698549 ENCODE Processing Pipeline 6dca018ae99f203d8cbb0cae53012789 https://www.encodeproject.org/files/ENCFF044KKF/@@download/ENCFF044KKF.bam released s3://encode-public/2016/07/18/e7ecc473-392c-4ab8-a80f-41af00789766/ENCFF044KKF.bam ENCODE3 mm10 archived inconsistent platforms ENCFF209HPI bam bam alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF636CUM/, /files/ENCFF905TFJ/ 2613993051 ENCODE Processing Pipeline d75f6d9cb454c71ca6bd5b95e169796f https://www.encodeproject.org/files/ENCFF209HPI/@@download/ENCFF209HPI.bam released s3://encode-public/2016/07/18/dfd7b499-7dfb-4bea-9b3a-e776568c3366/ENCFF209HPI.bam ENCODE3 mm10 archived inconsistent platforms ENCFF672WRE bam bam unfiltered alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF905TFJ/, /files/ENCFF309GLL/, /files/ENCFF636CUM/ 3659989041 ENCODE Processing Pipeline 8c24d6dd33a91b4d79e9276870c1fc32 https://www.encodeproject.org/files/ENCFF672WRE/@@download/ENCFF672WRE.bam released s3://encode-public/2020/10/08/b02d4f4e-6af3-4e00-9967-f666cfbf538d/ENCFF672WRE.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF756ZGW bam bam unfiltered alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF309GLL/, /files/ENCFF824WNR/, /files/ENCFF441BJJ/ 5727220333 ENCODE Processing Pipeline a9d04c7284f6fb6abd90f29fe593b6e2 https://www.encodeproject.org/files/ENCFF756ZGW/@@download/ENCFF756ZGW.bam released s3://encode-public/2020/10/08/44a6ff7a-0d87-4d83-9d59-8adc6a6863bb/ENCFF756ZGW.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF098TLW bam bam alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF309GLL/, /files/ENCFF824WNR/, /files/ENCFF441BJJ/ 4142886025 ENCODE Processing Pipeline 2ac945aa3f004527c133b33d27449022 https://www.encodeproject.org/files/ENCFF098TLW/@@download/ENCFF098TLW.bam released s3://encode-public/2020/10/08/a0968603-71e9-4286-9345-c211eff8f170/ENCFF098TLW.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF161BEU bam bam alignments mm10 ENCSR274AQL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF905TFJ/, /files/ENCFF309GLL/, /files/ENCFF636CUM/ 2701166606 ENCODE Processing Pipeline ee08cd9ddfa908a05eb00a0e4d7d03f8 https://www.encodeproject.org/files/ENCFF161BEU/@@download/ENCFF161BEU.bam released s3://encode-public/2020/10/08/f92ac07a-e2ef-49d2-8e3f-d5ab08a3d85b/ENCFF161BEU.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF707RGZ tagAlign tagAlign alignments hg19 ENCSR315YQI Control ChIP-seq /human-donors/ENCDO375CKP/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF668IHS/ 37522612 Anshul Kundaje, Stanford 70ae65bf9cb1f790a6ef87049af2855c https://www.encodeproject.org/files/ENCFF707RGZ/@@download/ENCFF707RGZ.tagAlign.gz archived s3://encode-public/2016/02/11/17f42862-923d-4710-adc0-8e4af25406b1/ENCFF707RGZ.tagAlign.gz Lab custom hg19 archived extremely low read depth ENCFF481CAB bam bam redacted unfiltered alignments hg19 ENCSR315YQI Control ChIP-seq /human-donors/ENCDO375CKP/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF668IHS/, /files/ENCFF807MUK/ 85830547 ENCODE Processing Pipeline 0fc87bf90596ed5ea300fdde23b2b5b9 https://www.encodeproject.org/files/ENCFF481CAB/@@download/ENCFF481CAB.bam released s3://encode-public/2018/01/31/b47b1e40-0870-4a43-a85f-8fc10cbaa272/ENCFF481CAB.bam ENCODE3 hg19 archived extremely low read depth ENCFF674SCO bam bam redacted alignments hg19 ENCSR315YQI Control ChIP-seq /human-donors/ENCDO375CKP/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF668IHS/, /files/ENCFF807MUK/ 47288868 ENCODE Processing Pipeline 311733c2b68feb7b8133854ee3be85ce https://www.encodeproject.org/files/ENCFF674SCO/@@download/ENCFF674SCO.bam released s3://encode-public/2018/01/31/50272f8b-6f3b-4444-a0a7-8e470bdd6b1b/ENCFF674SCO.bam ENCODE3 hg19 archived extremely low read depth ENCFF427XZH bam bam redacted unfiltered alignments GRCh38 ENCSR315YQI Control ChIP-seq /human-donors/ENCDO375CKP/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF668IHS/, /files/ENCFF643CGH/ 86735506 ENCODE Processing Pipeline 504d1c2ea95dde7adaea0ad2edd6f1cc https://www.encodeproject.org/files/ENCFF427XZH/@@download/ENCFF427XZH.bam released s3://encode-public/2018/01/31/3d303682-01c3-4bd7-9ce6-9e94a4f3b056/ENCFF427XZH.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF336FYB bam bam redacted alignments GRCh38 ENCSR315YQI Control ChIP-seq /human-donors/ENCDO375CKP/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF668IHS/, /files/ENCFF643CGH/ 47339550 ENCODE Processing Pipeline 7bd05a3434bda421efe084bb87020c46 https://www.encodeproject.org/files/ENCFF336FYB/@@download/ENCFF336FYB.bam released s3://encode-public/2018/01/31/321ed33d-6a64-4036-8797-90849d718aaa/ENCFF336FYB.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF123KWV bam bam redacted alignments GRCh38 ENCSR315YQI Control ChIP-seq /human-donors/ENCDO375CKP/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF668IHS/, /files/ENCFF110MCL/ 199204133 ENCODE Processing Pipeline ee874b797f81342518fa6074054c77e8 https://www.encodeproject.org/files/ENCFF123KWV/@@download/ENCFF123KWV.bam released s3://encode-public/2021/01/27/db76fafe-ec59-42c8-af23-5fd1adb65520/ENCFF123KWV.bam ENCODE4 v1.7.0 GRCh38 released extremely low read depth ENCFF781XFX tagAlign tagAlign alignments hg19 ENCSR596DLY Control ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 204045228 Anshul Kundaje, Stanford cebd5744c3507b4db11c8b1d1fbe79a0 https://www.encodeproject.org/files/ENCFF781XFX/@@download/ENCFF781XFX.tagAlign.gz archived s3://encode-public/2016/02/11/cc26d1a7-9c83-4014-992d-7c7178f9fcce/ENCFF781XFX.tagAlign.gz Lab custom hg19 archived ENCFF591CGZ bam bam redacted unfiltered alignments GRCh38 ENCSR596DLY Control ChIP-seq /human-donors/ENCDO147MBH/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF739ENQ/, /files/ENCFF267NAE/, /files/ENCFF643CGH/ 754201928 ENCODE Processing Pipeline 230f5c705f304d90eb171c4ffeb795d5 https://www.encodeproject.org/files/ENCFF591CGZ/@@download/ENCFF591CGZ.bam released s3://encode-public/2017/11/09/e78ff37b-f1d0-41d6-ae3f-c21436e7cc93/ENCFF591CGZ.bam ENCODE3 GRCh38 archived ENCFF659GET bam bam redacted alignments GRCh38 ENCSR596DLY Control ChIP-seq /human-donors/ENCDO147MBH/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF739ENQ/, /files/ENCFF267NAE/, /files/ENCFF643CGH/ 511564278 ENCODE Processing Pipeline 28bb3f0b98014e06a6fe93ead6f9c4de https://www.encodeproject.org/files/ENCFF659GET/@@download/ENCFF659GET.bam released s3://encode-public/2017/11/09/1b99360d-d768-4b75-8e02-e31082b58928/ENCFF659GET.bam ENCODE3 GRCh38 archived ENCFF745IHH bam bam redacted alignments hg19 ENCSR596DLY Control ChIP-seq /human-donors/ENCDO147MBH/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF739ENQ/, /files/ENCFF267NAE/, /files/ENCFF807MUK/ 510743786 ENCODE Processing Pipeline 499d260c1a15601bcaebbb2c58230ff0 https://www.encodeproject.org/files/ENCFF745IHH/@@download/ENCFF745IHH.bam released s3://encode-public/2018/01/20/0b2a4001-18bb-4369-b905-5ce39e7a05e3/ENCFF745IHH.bam ENCODE3 hg19 archived ENCFF613PXE bam bam redacted unfiltered alignments hg19 ENCSR596DLY Control ChIP-seq /human-donors/ENCDO147MBH/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF739ENQ/, /files/ENCFF267NAE/, /files/ENCFF807MUK/ 740851630 ENCODE Processing Pipeline a77dff832b3c7e895fb6edb81c01d573 https://www.encodeproject.org/files/ENCFF613PXE/@@download/ENCFF613PXE.bam released s3://encode-public/2018/01/20/c4a6e97b-59eb-473c-831d-291e5d4e25c7/ENCFF613PXE.bam ENCODE3 hg19 archived ENCFF348SFW bam bam redacted alignments GRCh38 ENCSR596DLY Control ChIP-seq /human-donors/ENCDO147MBH/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF923HED/, /files/ENCFF368GDJ/, /files/ENCFF110MCL/ 2483066667 ENCODE Processing Pipeline 59b953db20d5fd7d85746f6223b69e20 https://www.encodeproject.org/files/ENCFF348SFW/@@download/ENCFF348SFW.bam released s3://encode-public/2021/01/28/69686477-0f33-404d-b64b-546ea23e4cca/ENCFF348SFW.bam ENCODE4 v1.7.0 GRCh38 released ENCFF117MJR bam bam unfiltered alignments hg19 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF505NFA/, /files/ENCFF807MUK/ 4219172805 ENCODE Processing Pipeline 2e5bd62e217c4b2a5d5ef57217c1392f https://www.encodeproject.org/files/ENCFF117MJR/@@download/ENCFF117MJR.bam released s3://encode-public/2018/02/22/89961159-239a-4fc6-9c55-971899025d66/ENCFF117MJR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF505NFA fastq fastq reads ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 single-ended 3418880798 Bradley Bernstein, Broad 5493a1d8673f980e2a58299ecb629d8a SRA:SRR5339521 https://www.encodeproject.org/files/ENCFF505NFA/@@download/ENCFF505NFA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/25/cefb57a1-0964-4b7b-894a-d365367cdfd7/ENCFF505NFA.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF321VYX fastq fastq reads ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_2 25 paired-ended 2 /files/ENCFF215EPF/ 1888034398 Bradley Bernstein, Broad 96f9bf81a00653d9f65f74c51a4627ea https://www.encodeproject.org/files/ENCFF321VYX/@@download/ENCFF321VYX.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2014/10/28/0707037f-c534-439a-a779-4dc56e79178e/ENCFF321VYX.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF215EPF fastq fastq reads ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_2 25 paired-ended 1 /files/ENCFF321VYX/ 1873903522 Bradley Bernstein, Broad 8d81df6376f65921fb8b897437de4064 https://www.encodeproject.org/files/ENCFF215EPF/@@download/ENCFF215EPF.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2014/10/28/ab837bb1-9a32-47c1-b4dd-0690835ccec0/ENCFF215EPF.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF874VZF fastq fastq reads ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 30 paired-ended 1 /files/ENCFF167TUG/ 891292107 Bradley Bernstein, Broad 33e254b338878fca8520369c29510676 https://www.encodeproject.org/files/ENCFF874VZF/@@download/ENCFF874VZF.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2015/12/22/49ae0473-1ae0-43d9-bbea-65f56a9a66a2/ENCFF874VZF.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF167TUG fastq fastq reads ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 30 paired-ended 2 /files/ENCFF874VZF/ 933603465 Bradley Bernstein, Broad fbd6a09bbe5fbb7301045894de116d0c https://www.encodeproject.org/files/ENCFF167TUG/@@download/ENCFF167TUG.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2015/12/22/4ce63c1c-8518-4875-8808-521297eb6451/ENCFF167TUG.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF505ZSL bam bam alignments hg19 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF505NFA/, /files/ENCFF807MUK/ 2322796464 ENCODE Processing Pipeline b0e57aa44eb37f2941a02769efd9c08c https://www.encodeproject.org/files/ENCFF505ZSL/@@download/ENCFF505ZSL.bam released s3://encode-public/2016/01/07/9cb8d090-ccc4-45d6-8b7f-4ff1c8b286b6/ENCFF505ZSL.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF131TJA bam bam unfiltered alignments GRCh38 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF505NFA/, /files/ENCFF643CGH/ 4242955550 ENCODE Processing Pipeline acabff0aac8aa6d79c71beced6f7ef59 https://www.encodeproject.org/files/ENCFF131TJA/@@download/ENCFF131TJA.bam released s3://encode-public/2016/05/06/61173cef-2c1f-42a4-91a2-d9eb32bb7639/ENCFF131TJA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF989JQG bam bam alignments GRCh38 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF505NFA/, /files/ENCFF643CGH/ 2321958184 ENCODE Processing Pipeline cfbb0432f33666d8406594c909ba9757 https://www.encodeproject.org/files/ENCFF989JQG/@@download/ENCFF989JQG.bam released s3://encode-public/2016/05/06/cbbbb097-f4b1-455b-8ff3-1f43d9184f31/ENCFF989JQG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF402RTK bam bam unfiltered alignments GRCh38 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF505NFA/ 4127955611 ENCODE Processing Pipeline 7866bd9906ae972c8c741492131156f5 https://www.encodeproject.org/files/ENCFF402RTK/@@download/ENCFF402RTK.bam released s3://encode-public/2020/09/16/6b5cd99a-339b-4d3c-9a2d-0bdce9cf60dc/ENCFF402RTK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF825DPO bam bam alignments GRCh38 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF505NFA/ 2505082972 ENCODE Processing Pipeline 25d7da037425622a1fe787f90f9bcb8b https://www.encodeproject.org/files/ENCFF825DPO/@@download/ENCFF825DPO.bam released s3://encode-public/2020/09/16/4b33c890-e1dd-4180-bb09-f31ffa6397f4/ENCFF825DPO.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF552SEY bam bam unfiltered alignments GRCh38 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF505NFA/ 3716053584 ENCODE Processing Pipeline ba704c5f61b3b87426b4dadb1df94f9c https://www.encodeproject.org/files/ENCFF552SEY/@@download/ENCFF552SEY.bam released s3://encode-public/2021/03/18/4ce9667e-b126-4911-b48a-17d98bc44a2a/ENCFF552SEY.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF721QOX bam bam alignments GRCh38 ENCSR899XXQ Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF505NFA/ 2182837466 ENCODE Processing Pipeline 8b9dbd02a51409a6f707e3cd965ab5b0 https://www.encodeproject.org/files/ENCFF721QOX/@@download/ENCFF721QOX.bam released s3://encode-public/2021/03/18/cb23b56b-bbe4-46d5-9869-843d215c1a06/ENCFF721QOX.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF325XDH tagAlign tagAlign alignments hg19 ENCSR860QVB Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF082CWZ/ 226016668 Anshul Kundaje, Stanford 390c88106a11c56d7813ed7f9cb08b89 https://www.encodeproject.org/files/ENCFF325XDH/@@download/ENCFF325XDH.tagAlign.gz archived s3://encode-public/2016/05/02/c7eb00ea-257b-4486-8746-416751a6caa3/ENCFF325XDH.tagAlign.gz Lab custom hg19 archived low read length ENCFF082CWZ fastq fastq reads ENCSR860QVB Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1697782336 Zhiping Weng, UMass 42129288ab7d7cb28645dcc896e6dd6d SRA:SRR1067000 https://www.encodeproject.org/files/ENCFF082CWZ/@@download/ENCFF082CWZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/abcb96c1-c37a-46e0-8549-5ed4e4633d65/ENCFF082CWZ.fastq.gz low read length ENCFF166YWN bam bam alignments GRCh38 ENCSR860QVB Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF082CWZ/, /files/ENCFF110MCL/ 1537678004 ENCODE Processing Pipeline 0f9e15b916d157cf680761d40d492398 https://www.encodeproject.org/files/ENCFF166YWN/@@download/ENCFF166YWN.bam released s3://encode-public/2020/10/08/2b1332b8-86be-4588-b477-b06337228e47/ENCFF166YWN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF524EAB bam bam unfiltered alignments GRCh38 ENCSR860QVB Control ChIP-seq /human-donors/ENCDO734LQV/ EFO:0007086 HUES6 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF082CWZ/ 1972370627 ENCODE Processing Pipeline 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single-ended 358923888 Zhiping Weng, UMass fa3681a166e35376af143523c4fb22da SRA:SRR1067428 https://www.encodeproject.org/files/ENCFF867VQK/@@download/ENCFF867VQK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/7f59eba3-dcbc-44c3-91b8-6ab0acf9c9db/ENCFF867VQK.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF590VUK fastq fastq reads ENCSR842VGU Control ChIP-seq /human-donors/ENCDO778DGP/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 365669911 Zhiping Weng, UMass 0bca9700bba9ea51fa0e2b44626ab2c2 SRA:SRR1067414 https://www.encodeproject.org/files/ENCFF590VUK/@@download/ENCFF590VUK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/2307a28b-92aa-4237-847e-2d55382020da/ENCFF590VUK.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF372QSN bam bam unfiltered alignments hg19 ENCSR842VGU 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ENCODE Processing Pipeline c8993d8a6a97701978fb6a38d6bd2dda https://www.encodeproject.org/files/ENCFF004FTN/@@download/ENCFF004FTN.bam released s3://encode-public/2021/06/18/cae21b21-3822-4b77-a9d0-af0ef53ffb62/ENCFF004FTN.bam ENCODE4 v1.8.0 GRCh38 released ENCFF332GFK fastq fastq reads ENCSR458NUL Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 188248878 Kevin White, UChicago 40096e314c9ee09b69391cd16265e0ff https://www.encodeproject.org/files/ENCFF332GFK/@@download/ENCFF332GFK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF761DEA/ released s3://encode-public/2015/07/30/c991fe5b-fa58-4e0e-abec-fcff0fe7937c/ENCFF332GFK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF801IGT bam bam alignments ce10 ENCSR458NUL Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF332GFK/ 247368471 Kevin White, UChicago 99846294dc1360f61f7dff51789680fd https://www.encodeproject.org/files/ENCFF801IGT/@@download/ENCFF801IGT.bam released s3://encode-public/2015/08/07/56ea9faa-5775-4292-a89f-9494419aafd2/ENCFF801IGT.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF154OJM bigWig bigWig signal of unique reads ce10 ENCSR458NUL Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF801IGT/ 10074451 Kevin White, UChicago ac834909f87a849e09759c55514152c3 https://www.encodeproject.org/files/ENCFF154OJM/@@download/ENCFF154OJM.bigWig released s3://encode-public/2015/09/22/a55a9e03-5787-404e-97d9-b0215b5facc4/ENCFF154OJM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF093XOM bigWig bigWig read-depth normalized signal ce10 ENCSR458NUL Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF801IGT/ 10083785 Kevin White, UChicago 245a2861de38bd467bf33ad51f923caa https://www.encodeproject.org/files/ENCFF093XOM/@@download/ENCFF093XOM.bigWig released s3://encode-public/2015/09/22/729ca0b9-fc21-452f-9780-9e831d923e0f/ENCFF093XOM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF722HIE bam bam alignments ce11 ENCSR458NUL Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF332GFK/ 247622886 Kevin White, UChicago 6e3c3b9cd8dadf98794318a064074fb9 https://www.encodeproject.org/files/ENCFF722HIE/@@download/ENCFF722HIE.bam released s3://encode-public/2016/01/19/4fe7d7bd-da80-4670-9de7-dc3be3e19352/ENCFF722HIE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF016RHR bigWig bigWig signal of unique reads ce11 ENCSR458NUL Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF722HIE/ 10071375 Kevin White, UChicago 31a08470f85d94a10840a9521f7d1499 https://www.encodeproject.org/files/ENCFF016RHR/@@download/ENCFF016RHR.bigWig released s3://encode-public/2016/02/03/4aa1bc1c-645e-45ab-9128-8cf4a90a6452/ENCFF016RHR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF958YXS bigWig bigWig read-depth normalized signal ce11 ENCSR458NUL Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF722HIE/ 10082812 Kevin White, UChicago 4407c100eca3bd08caf93d024d032218 https://www.encodeproject.org/files/ENCFF958YXS/@@download/ENCFF958YXS.bigWig released s3://encode-public/2016/02/03/746dd52c-c602-43a6-81f5-a0a16e92c58d/ENCFF958YXS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF878GIK fastq fastq reads ENCSR917QWA Control ChIP-seq /worm-donors/ENCDO013XCZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173537/'], '@type': ['Target', 'Item'], 'name': 'duxl-1-celegans', 'label': 'duxl-1', '@id': '/targets/duxl-1-celegans/', 'title': 'duxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1f5fe3d0-d388-40f3-a8ad-08812536178e', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 488137385 Kevin White, UChicago 2a2e2ce1897db88de10cab9b1b993c27 https://www.encodeproject.org/files/ENCFF878GIK/@@download/ENCFF878GIK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/e93012c1-af8b-41fb-835c-4c5fd6543ee5/ENCFF878GIK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF990KTF bam bam alignments ce10 ENCSR917QWA Control ChIP-seq /worm-donors/ENCDO013XCZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173537/'], '@type': ['Target', 'Item'], 'name': 'duxl-1-celegans', 'label': 'duxl-1', '@id': '/targets/duxl-1-celegans/', 'title': 'duxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1f5fe3d0-d388-40f3-a8ad-08812536178e', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF878GIK/ 653335327 Kevin White, UChicago c4d78d14d4282cd16e6ff29ee91cf941 https://www.encodeproject.org/files/ENCFF990KTF/@@download/ENCFF990KTF.bam released s3://encode-public/2015/08/07/d9eddcc8-9092-4762-a026-29db185bf8ee/ENCFF990KTF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF524HWN bigWig bigWig read-depth normalized signal ce10 ENCSR917QWA Control ChIP-seq /worm-donors/ENCDO013XCZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173537/'], '@type': ['Target', 'Item'], 'name': 'duxl-1-celegans', 'label': 'duxl-1', '@id': '/targets/duxl-1-celegans/', 'title': 'duxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1f5fe3d0-d388-40f3-a8ad-08812536178e', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF990KTF/ 9974254 Kevin White, UChicago e734c850d32739ec436f7aa9dfdc823f https://www.encodeproject.org/files/ENCFF524HWN/@@download/ENCFF524HWN.bigWig released s3://encode-public/2015/10/02/92953f4f-506b-49d1-a6ac-24b8ba9348e6/ENCFF524HWN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF568EDH bigWig bigWig signal of unique reads ce10 ENCSR917QWA Control ChIP-seq /worm-donors/ENCDO013XCZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173537/'], '@type': ['Target', 'Item'], 'name': 'duxl-1-celegans', 'label': 'duxl-1', '@id': '/targets/duxl-1-celegans/', 'title': 'duxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1f5fe3d0-d388-40f3-a8ad-08812536178e', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF990KTF/ 9999062 Kevin White, UChicago 81b250cb46a3cadd1bcac1aa2f4961e7 https://www.encodeproject.org/files/ENCFF568EDH/@@download/ENCFF568EDH.bigWig released s3://encode-public/2015/10/02/3f8399b5-aa2b-4f38-96a0-112dbe6e1a8f/ENCFF568EDH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF621CID bam bam alignments ce11 ENCSR917QWA Control ChIP-seq /worm-donors/ENCDO013XCZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173537/'], '@type': ['Target', 'Item'], 'name': 'duxl-1-celegans', 'label': 'duxl-1', '@id': '/targets/duxl-1-celegans/', 'title': 'duxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1f5fe3d0-d388-40f3-a8ad-08812536178e', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF878GIK/ 653867181 Kevin White, UChicago ee7fa8e5d49a05391fed42193365cdbc https://www.encodeproject.org/files/ENCFF621CID/@@download/ENCFF621CID.bam released s3://encode-public/2016/01/16/9c7cb4ae-fa8e-4d48-a471-0012ce7bd484/ENCFF621CID.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF433PBV bigWig bigWig signal of unique reads ce11 ENCSR917QWA Control ChIP-seq /worm-donors/ENCDO013XCZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173537/'], '@type': ['Target', 'Item'], 'name': 'duxl-1-celegans', 'label': 'duxl-1', '@id': '/targets/duxl-1-celegans/', 'title': 'duxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1f5fe3d0-d388-40f3-a8ad-08812536178e', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF621CID/ 9995925 Kevin White, UChicago 65cb44f4a33207747391882db5ccf03c https://www.encodeproject.org/files/ENCFF433PBV/@@download/ENCFF433PBV.bigWig released s3://encode-public/2016/02/03/ba68fe87-600d-450d-88eb-b2ba34668aa7/ENCFF433PBV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF864VET bigWig bigWig read-depth normalized signal ce11 ENCSR917QWA Control ChIP-seq /worm-donors/ENCDO013XCZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173537/'], '@type': ['Target', 'Item'], 'name': 'duxl-1-celegans', 'label': 'duxl-1', '@id': '/targets/duxl-1-celegans/', 'title': 'duxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1f5fe3d0-d388-40f3-a8ad-08812536178e', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF621CID/ 9966912 Kevin White, UChicago 008173825b1e750adf02df1ce970608a https://www.encodeproject.org/files/ENCFF864VET/@@download/ENCFF864VET.bigWig released s3://encode-public/2016/02/03/ef923c09-7e9f-478d-bb17-e97b6d87d595/ENCFF864VET.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF657AYR tagAlign tagAlign alignments hg19 ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF693FJC/, /files/ENCFF454ZHO/ 176902963 Anshul Kundaje, Stanford e87d7288cec8c1ad41cee8a143178fb1 https://www.encodeproject.org/files/ENCFF657AYR/@@download/ENCFF657AYR.tagAlign.gz archived s3://encode-public/2016/03/30/3dc2a35f-adc4-4977-b183-7576220a6a0c/ENCFF657AYR.tagAlign.gz Lab custom hg19 archived insufficient read length ENCFF693FJC fastq fastq reads ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 single-ended 873252897 Zhiping Weng, UMass 1ab6373861e335bcee4a543cf7edeb94 SRA:SRR179765 https://www.encodeproject.org/files/ENCFF693FJC/@@download/ENCFF693FJC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/17/a5387b65-8cee-4430-98f2-b4869c77f63d/ENCFF693FJC.fastq.gz insufficient read length ENCFF454ZHO fastq fastq reads ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 single-ended 919762678 Zhiping Weng, UMass 50af7902c5c5231968285f4b3265ff50 SRA:SRR179764 https://www.encodeproject.org/files/ENCFF454ZHO/@@download/ENCFF454ZHO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/17/cdc811d0-6f74-4d15-a17e-da81c4551080/ENCFF454ZHO.fastq.gz insufficient read length ENCFF853RAG bam bam unfiltered alignments hg19 ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF693FJC/, /files/ENCFF807MUK/, /files/ENCFF454ZHO/ 2188596000 ENCODE Processing Pipeline aab9e620065fd5ba8b42ff7fadbea99b https://www.encodeproject.org/files/ENCFF853RAG/@@download/ENCFF853RAG.bam released s3://encode-public/2017/02/04/e907270a-8f6c-4684-a10a-756bb2da5942/ENCFF853RAG.bam ENCODE3 hg19 archived insufficient read length ENCFF132AYD bam bam unfiltered alignments GRCh38 ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF693FJC/, /files/ENCFF643CGH/, /files/ENCFF454ZHO/ 2202822897 ENCODE Processing Pipeline d5d626c045b2c9d70134fd6defab6380 https://www.encodeproject.org/files/ENCFF132AYD/@@download/ENCFF132AYD.bam released s3://encode-public/2017/02/04/776c335f-bef5-40a1-b8a3-bab16466f8a5/ENCFF132AYD.bam ENCODE3 GRCh38 archived insufficient read length ENCFF899CRH bam bam alignments GRCh38 ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF693FJC/, /files/ENCFF643CGH/, /files/ENCFF454ZHO/ 1066086374 ENCODE Processing Pipeline f79c1c266f0460840d80034fa4006c92 https://www.encodeproject.org/files/ENCFF899CRH/@@download/ENCFF899CRH.bam released s3://encode-public/2017/02/04/abc3c235-b911-4d2b-b9e1-76a1ceffd1da/ENCFF899CRH.bam ENCODE3 GRCh38 archived insufficient read length ENCFF865GGX bam bam alignments hg19 ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF693FJC/, /files/ENCFF807MUK/, /files/ENCFF454ZHO/ 1066578521 ENCODE Processing Pipeline 00ac244c1a72622a2e4fb2478c04253a https://www.encodeproject.org/files/ENCFF865GGX/@@download/ENCFF865GGX.bam released s3://encode-public/2017/02/04/cc506e1b-cc14-4099-93ac-804fd5932783/ENCFF865GGX.bam ENCODE3 hg19 archived insufficient read length ENCFF752KKB bam bam unfiltered alignments GRCh38 ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF454ZHO/, /files/ENCFF110MCL/, /files/ENCFF693FJC/ 2095771740 ENCODE Processing Pipeline 66162026b3576fbd994d93de628a45eb https://www.encodeproject.org/files/ENCFF752KKB/@@download/ENCFF752KKB.bam released s3://encode-public/2020/11/13/0e8ffdc9-f5f0-42f1-8c5b-e35ba8995afc/ENCFF752KKB.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length ENCFF837OAD bam bam alignments GRCh38 ENCSR697DAD Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF454ZHO/, /files/ENCFF110MCL/, /files/ENCFF693FJC/ 1192089463 ENCODE Processing Pipeline 61ee5b6b3c5bb39435847f5f8b5f7255 https://www.encodeproject.org/files/ENCFF837OAD/@@download/ENCFF837OAD.bam released s3://encode-public/2020/11/13/00c27dc0-d758-49ad-a0c8-608b3314c877/ENCFF837OAD.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length ENCFF810OTN tagAlign tagAlign alignments hg19 ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF308WTH/ 180576528 Anshul Kundaje, Stanford 35904fdebc11bb53e227b68469ea4475 https://www.encodeproject.org/files/ENCFF810OTN/@@download/ENCFF810OTN.tagAlign.gz archived s3://encode-public/2016/05/02/de88fde3-7ac7-47aa-a633-1215f0239dd6/ENCFF810OTN.tagAlign.gz Lab custom hg19 archived low read length ENCFF308WTH fastq fastq reads ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1270498731 Zhiping Weng, UMass 4fd8e4f711f2879046faed1643ae1c22 SRA:SRR1068404 https://www.encodeproject.org/files/ENCFF308WTH/@@download/ENCFF308WTH.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/19/c678e69c-7c0d-4156-9456-207510692268/ENCFF308WTH.fastq.gz low read length ENCFF378YSD bam bam unfiltered alignments hg19 ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF308WTH/ 1483361102 ENCODE Processing Pipeline 225a6592b5014cb62753ae864ed57fc6 https://www.encodeproject.org/files/ENCFF378YSD/@@download/ENCFF378YSD.bam released s3://encode-public/2016/12/19/da78faa7-e767-4cc3-8ba4-ab68a8d346eb/ENCFF378YSD.bam ENCODE3 hg19 archived low read length ENCFF904OCQ bam bam unfiltered alignments GRCh38 ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF308WTH/ 1492001461 ENCODE Processing Pipeline ea522b593638a6eeb53c634ee3030fb6 https://www.encodeproject.org/files/ENCFF904OCQ/@@download/ENCFF904OCQ.bam released s3://encode-public/2016/12/19/02ed84d1-3a9c-4fef-a00b-e95011105828/ENCFF904OCQ.bam ENCODE3 GRCh38 archived low read length ENCFF017XRP bam bam alignments hg19 ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF308WTH/ 1098689876 ENCODE Processing Pipeline af4c893faddc4ed0c38aa3d1a49cb918 https://www.encodeproject.org/files/ENCFF017XRP/@@download/ENCFF017XRP.bam released s3://encode-public/2016/12/19/e2a6e1c5-58ab-47a5-9dd3-fcc9b98fb329/ENCFF017XRP.bam ENCODE3 hg19 archived low read length ENCFF584IFA bam bam alignments GRCh38 ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF308WTH/ 1098490565 ENCODE Processing Pipeline 346d946761b72fc57933954205f815f8 https://www.encodeproject.org/files/ENCFF584IFA/@@download/ENCFF584IFA.bam released s3://encode-public/2016/12/19/417d9cbd-87f7-4763-891c-19e9518c2e93/ENCFF584IFA.bam ENCODE3 GRCh38 archived low read length ENCFF178NCC bam bam alignments GRCh38 ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF308WTH/ 1181900984 ENCODE Processing Pipeline 36224da5e86c7487671c35acbc020fe8 https://www.encodeproject.org/files/ENCFF178NCC/@@download/ENCFF178NCC.bam released s3://encode-public/2020/11/13/5e21bc60-2880-459f-9c34-51488b7b68be/ENCFF178NCC.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF521SQR bam bam unfiltered alignments GRCh38 ENCSR332DTY Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007107 iPS-18c cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF308WTH/ 1460250906 ENCODE Processing Pipeline ceab61382993604936324411d7012284 https://www.encodeproject.org/files/ENCFF521SQR/@@download/ENCFF521SQR.bam released s3://encode-public/2020/11/13/aff28719-1080-4949-81e0-78a71eabbde2/ENCFF521SQR.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF853TEO fastq fastq reads ENCSR324PNK Control ChIP-seq /worm-donors/ENCDO126ROT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180062/'], '@type': ['Target', 'Item'], 'name': 'nhr-102-celegans', 'label': 'nhr-102', '@id': '/targets/nhr-102-celegans/', 'title': 'nhr-102 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '71164a82-2387-4334-a79d-d96a700ee278', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 677011830 Kevin White, UChicago 98cf68d2a798886fe3d9213ec7b653ea https://www.encodeproject.org/files/ENCFF853TEO/@@download/ENCFF853TEO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/9e3b8199-2116-44a8-a7a2-2f86b1e4bbc0/ENCFF853TEO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF511NWR bam bam alignments ce10 ENCSR324PNK Control ChIP-seq /worm-donors/ENCDO126ROT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180062/'], '@type': ['Target', 'Item'], 'name': 'nhr-102-celegans', 'label': 'nhr-102', '@id': '/targets/nhr-102-celegans/', 'title': 'nhr-102 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '71164a82-2387-4334-a79d-d96a700ee278', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF853TEO/ 985010181 Kevin White, UChicago 4efd355b8137b7a09c450027cd021e1a https://www.encodeproject.org/files/ENCFF511NWR/@@download/ENCFF511NWR.bam released s3://encode-public/2015/08/07/d85cb16c-2ff8-4690-8b83-313391dcbc69/ENCFF511NWR.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF603JKB bigWig bigWig read-depth normalized signal ce10 ENCSR324PNK Control ChIP-seq /worm-donors/ENCDO126ROT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180062/'], '@type': ['Target', 'Item'], 'name': 'nhr-102-celegans', 'label': 'nhr-102', '@id': '/targets/nhr-102-celegans/', 'title': 'nhr-102 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '71164a82-2387-4334-a79d-d96a700ee278', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF511NWR/ 10033276 Kevin White, UChicago 7d3923eadaf98141927ee2d7764d4807 https://www.encodeproject.org/files/ENCFF603JKB/@@download/ENCFF603JKB.bigWig released s3://encode-public/2015/10/02/ff12149d-ac2f-44ed-8550-2f2dc3475347/ENCFF603JKB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF418EZF bigWig bigWig signal of unique reads ce10 ENCSR324PNK Control ChIP-seq /worm-donors/ENCDO126ROT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180062/'], '@type': ['Target', 'Item'], 'name': 'nhr-102-celegans', 'label': 'nhr-102', '@id': '/targets/nhr-102-celegans/', 'title': 'nhr-102 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '71164a82-2387-4334-a79d-d96a700ee278', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF511NWR/ 9986341 Kevin White, UChicago b43a7d645fcfb1494c50777419beef61 https://www.encodeproject.org/files/ENCFF418EZF/@@download/ENCFF418EZF.bigWig released s3://encode-public/2015/10/02/5c8e596d-1401-447b-83df-006a0df7a102/ENCFF418EZF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF082RAL bam bam alignments ce11 ENCSR324PNK Control ChIP-seq /worm-donors/ENCDO126ROT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180062/'], '@type': ['Target', 'Item'], 'name': 'nhr-102-celegans', 'label': 'nhr-102', '@id': '/targets/nhr-102-celegans/', 'title': 'nhr-102 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '71164a82-2387-4334-a79d-d96a700ee278', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF853TEO/ 985905825 Kevin White, UChicago f3ce5bbd918306ce6d0897cbcde38a64 https://www.encodeproject.org/files/ENCFF082RAL/@@download/ENCFF082RAL.bam released s3://encode-public/2016/01/19/042fea62-47ac-44e0-86cf-1002d77c739b/ENCFF082RAL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF649QFS bigWig bigWig signal of unique reads ce11 ENCSR324PNK Control ChIP-seq /worm-donors/ENCDO126ROT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180062/'], '@type': ['Target', 'Item'], 'name': 'nhr-102-celegans', 'label': 'nhr-102', '@id': '/targets/nhr-102-celegans/', 'title': 'nhr-102 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '71164a82-2387-4334-a79d-d96a700ee278', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF082RAL/ 9981760 Kevin White, UChicago 241204e46f778b2d4a215d0d771609a7 https://www.encodeproject.org/files/ENCFF649QFS/@@download/ENCFF649QFS.bigWig released s3://encode-public/2016/02/03/17b61115-a11f-4020-9dfe-d25e02bb4a20/ENCFF649QFS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF551LIS bigWig bigWig read-depth normalized signal ce11 ENCSR324PNK Control ChIP-seq /worm-donors/ENCDO126ROT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180062/'], '@type': ['Target', 'Item'], 'name': 'nhr-102-celegans', 'label': 'nhr-102', '@id': '/targets/nhr-102-celegans/', 'title': 'nhr-102 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '71164a82-2387-4334-a79d-d96a700ee278', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF082RAL/ 10025235 Kevin White, UChicago 9443ddc76cd59bc6af53c74e141425db https://www.encodeproject.org/files/ENCFF551LIS/@@download/ENCFF551LIS.bigWig released s3://encode-public/2016/02/03/26bc3e36-35b8-4290-a5d4-5f8eaca633ec/ENCFF551LIS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF768VSZ fastq fastq reads ENCSR534KYQ Control ChIP-seq /human-donors/ENCDO776JEI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 312312030 Bradley Bernstein, Broad ecf6e8c663ee3ba5cc21e7a4e040bd75 SRA:SRR16811791 https://www.encodeproject.org/files/ENCFF768VSZ/@@download/ENCFF768VSZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/e5269844-87f3-48a2-9785-4d12d103b07f/ENCFF768VSZ.fastq.gz 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released ENCFF637ICH fastq fastq reads ENCSR535ZRZ Control ChIP-seq /fly-donors/ENCDO860AHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34992/'], '@type': ['Target', 'Item'], 'name': 'her-dmelanogaster', 'label': 'her', '@id': '/targets/her-dmelanogaster/', 'title': 'her (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8e361de5-8eb0-45fd-af69-63e89aa83e45', 'status': 'released'} dm3 2L 16669187 16688363 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1081589430 Kevin White, UChicago 1276c15ff6c0ffe520fb9541b0f944f0 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organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34992/'], '@type': ['Target', 'Item'], 'name': 'her-dmelanogaster', 'label': 'her', '@id': '/targets/her-dmelanogaster/', 'title': 'her (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8e361de5-8eb0-45fd-af69-63e89aa83e45', 'status': 'released'} dm3 2L 16669187 16688363 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF206YSR/ 15595137 Kevin White, UChicago 8206ff4e948468d009bfb2728ef045c6 https://www.encodeproject.org/files/ENCFF416NET/@@download/ENCFF416NET.bigWig released s3://encode-public/2015/10/06/72360623-9fd4-46b2-b879-a566c0f6227f/ENCFF416NET.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF886KZJ bam bam alignments dm6 ENCSR535ZRZ Control ChIP-seq /fly-donors/ENCDO860AHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34992/'], '@type': ['Target', 'Item'], 'name': 'her-dmelanogaster', 'label': 'her', '@id': '/targets/her-dmelanogaster/', 'title': 'her (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8e361de5-8eb0-45fd-af69-63e89aa83e45', 'status': 'released'} dm3 2L 16669187 16688363 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF637ICH/ 1579658614 Kevin White, UChicago 53920277db4aba7d0c2a79ecd030132d https://www.encodeproject.org/files/ENCFF886KZJ/@@download/ENCFF886KZJ.bam released s3://encode-public/2016/04/21/02aebcd6-e0b7-4831-b9ef-31cf69898756/ENCFF886KZJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF519YDY bigWig bigWig signal of unique reads dm6 ENCSR535ZRZ Control ChIP-seq /fly-donors/ENCDO860AHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34992/'], '@type': ['Target', 'Item'], 'name': 'her-dmelanogaster', 'label': 'her', '@id': '/targets/her-dmelanogaster/', 'title': 'her (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8e361de5-8eb0-45fd-af69-63e89aa83e45', 'status': 'released'} dm3 2L 16669187 16688363 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF886KZJ/ 17654848 Kevin White, UChicago c29cf4789d2fa8e3e83dd152ef77a0b9 https://www.encodeproject.org/files/ENCFF519YDY/@@download/ENCFF519YDY.bigWig released s3://encode-public/2016/06/21/04d99b2d-1bd4-42a8-be01-f9abab3cb344/ENCFF519YDY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF748YFK bigWig bigWig read-depth normalized signal dm6 ENCSR535ZRZ Control ChIP-seq /fly-donors/ENCDO860AHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34992/'], '@type': ['Target', 'Item'], 'name': 'her-dmelanogaster', 'label': 'her', '@id': '/targets/her-dmelanogaster/', 'title': 'her (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8e361de5-8eb0-45fd-af69-63e89aa83e45', 'status': 'released'} dm3 2L 16669187 16688363 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF886KZJ/ 17688032 Kevin White, UChicago 16022b8d4ba0878dd4a4551568361b94 https://www.encodeproject.org/files/ENCFF748YFK/@@download/ENCFF748YFK.bigWig released s3://encode-public/2016/06/21/9adbc43d-42e4-41d6-8944-57eed2efae08/ENCFF748YFK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF808DMU tagAlign tagAlign alignments hg19 ENCSR425TBM Control ChIP-seq /human-donors/ENCDO120UGO/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF525FPV/ 236156354 Anshul Kundaje, Stanford cd047d24aa2a6757e9766147eafbf64a https://www.encodeproject.org/files/ENCFF808DMU/@@download/ENCFF808DMU.tagAlign.gz archived s3://encode-public/2016/03/30/6eb2c791-8178-4857-9aa6-da60f0b6137d/ENCFF808DMU.tagAlign.gz Lab custom hg19 archived low read length ENCFF655STS bam bam redacted unfiltered alignments GRCh38 ENCSR425TBM Control ChIP-seq /human-donors/ENCDO120UGO/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF525FPV/, /files/ENCFF643CGH/ 659366211 ENCODE Processing Pipeline 518d9b661e355065a0950b0cdea5199b https://www.encodeproject.org/files/ENCFF655STS/@@download/ENCFF655STS.bam released s3://encode-public/2018/01/18/e27a2991-0305-42f0-bc6f-659da6f3ea65/ENCFF655STS.bam ENCODE3 GRCh38 archived low read length ENCFF076MUM bam bam redacted alignments GRCh38 ENCSR425TBM Control ChIP-seq /human-donors/ENCDO120UGO/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF525FPV/, /files/ENCFF643CGH/ 461555306 ENCODE Processing Pipeline a5b180bae800860b9576676a4f4d5dbc https://www.encodeproject.org/files/ENCFF076MUM/@@download/ENCFF076MUM.bam released s3://encode-public/2018/01/18/3609b828-8546-4c69-893e-039677e03ee8/ENCFF076MUM.bam ENCODE3 GRCh38 archived low read length ENCFF375WMJ bam bam redacted alignments hg19 ENCSR425TBM Control ChIP-seq /human-donors/ENCDO120UGO/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF525FPV/, /files/ENCFF807MUK/ 461545526 ENCODE Processing Pipeline 49d22fd11c1f4179935be8571b7cefd7 https://www.encodeproject.org/files/ENCFF375WMJ/@@download/ENCFF375WMJ.bam released s3://encode-public/2018/01/19/815b8f23-e007-4f28-9c4e-c974a78ca031/ENCFF375WMJ.bam ENCODE3 hg19 archived low read length ENCFF421FUR bam bam redacted unfiltered alignments hg19 ENCSR425TBM Control ChIP-seq /human-donors/ENCDO120UGO/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF525FPV/, /files/ENCFF807MUK/ 652646924 ENCODE Processing Pipeline 29f91feeaf867c78f203bf6ea721eaf6 https://www.encodeproject.org/files/ENCFF421FUR/@@download/ENCFF421FUR.bam released s3://encode-public/2018/01/19/0e23062c-ef17-425d-9a84-680d26ef7609/ENCFF421FUR.bam ENCODE3 hg19 archived low read length ENCFF282DCO bam bam redacted alignments GRCh38 ENCSR425TBM Control ChIP-seq /human-donors/ENCDO120UGO/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF525FPV/, /files/ENCFF110MCL/ 1445607132 ENCODE Processing Pipeline 12136a3e0263e4100a9e5eeae9592b52 https://www.encodeproject.org/files/ENCFF282DCO/@@download/ENCFF282DCO.bam released s3://encode-public/2021/01/27/d9130968-df50-4d87-b1c7-a9fc8716bf0f/ENCFF282DCO.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF411YQM fastq fastq reads ENCSR139WMA Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 2065253139 Zhiping Weng, UMass bae3cd4a22edfd384937e8518e11bcd2 SRA:SRR578716 https://www.encodeproject.org/files/ENCFF411YQM/@@download/ENCFF411YQM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/b08b0aa5-c903-467b-bf73-c77a0e922945/ENCFF411YQM.fastq.gz ENCFF383WSJ bam bam alignments hg19 ENCSR139WMA Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411YQM/, /files/ENCFF807MUK/ 1143014100 ENCODE Processing Pipeline 8b7c4bc3240c371ff852aa281a846401 https://www.encodeproject.org/files/ENCFF383WSJ/@@download/ENCFF383WSJ.bam released s3://encode-public/2017/03/17/872026ea-8d0b-432a-87d3-47695d3c8377/ENCFF383WSJ.bam ENCODE3 hg19 archived ENCFF685ZDP bam bam unfiltered alignments GRCh38 ENCSR139WMA Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411YQM/, /files/ENCFF643CGH/ 1952375984 ENCODE Processing Pipeline 3b2e362a55f0517e924ddc0a83f6bf57 https://www.encodeproject.org/files/ENCFF685ZDP/@@download/ENCFF685ZDP.bam released s3://encode-public/2017/03/17/e0b5b0b1-1a44-4f31-8a97-dc837f315ecc/ENCFF685ZDP.bam ENCODE3 GRCh38 archived ENCFF881HEW bam bam alignments GRCh38 ENCSR139WMA Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411YQM/, /files/ENCFF643CGH/ 1142719452 ENCODE Processing Pipeline 60304da7eb0d287a9c3cace44d9b101a https://www.encodeproject.org/files/ENCFF881HEW/@@download/ENCFF881HEW.bam released s3://encode-public/2017/03/17/fac0ecad-8ede-40a3-95f0-baf4f3887da9/ENCFF881HEW.bam ENCODE3 GRCh38 archived ENCFF178NYO bam bam unfiltered alignments hg19 ENCSR139WMA Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411YQM/, /files/ENCFF807MUK/ 1948023897 ENCODE Processing Pipeline 5ead427ff0e3f6c6656c2727417cda1f https://www.encodeproject.org/files/ENCFF178NYO/@@download/ENCFF178NYO.bam released s3://encode-public/2017/03/17/1c5e4a52-b0f3-4674-a94a-b892591e52ba/ENCFF178NYO.bam ENCODE3 hg19 archived ENCFF445FMS bam bam unfiltered alignments GRCh38 ENCSR139WMA Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF411YQM/ 2296545334 ENCODE Processing Pipeline 59f3007e8d050404bae2df55c24dfc31 https://www.encodeproject.org/files/ENCFF445FMS/@@download/ENCFF445FMS.bam released s3://encode-public/2020/10/08/f1f266ba-69e1-41a3-bd70-6b08c58db776/ENCFF445FMS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF241WZA bam bam alignments GRCh38 ENCSR139WMA Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF411YQM/ 1699278919 ENCODE Processing Pipeline 669033cfa6c351c4a771a102ca284997 https://www.encodeproject.org/files/ENCFF241WZA/@@download/ENCFF241WZA.bam released s3://encode-public/2020/10/08/716eacc5-787c-4bac-9d57-219e80970ceb/ENCFF241WZA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF768ZOR bam bam redacted alignments GRCh38 ENCSR684ZLL Control ChIP-seq /human-donors/ENCDO686OPO/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF533FLV/ 290261089 ENCODE Processing Pipeline b62583106cc5a5dee8a2cceae4660161 https://www.encodeproject.org/files/ENCFF768ZOR/@@download/ENCFF768ZOR.bam released s3://encode-public/2017/11/09/7bca7ca9-a459-4a72-b857-ab319963a0c6/ENCFF768ZOR.bam ENCODE3 GRCh38 archived ENCFF260EDJ bam bam redacted unfiltered alignments GRCh38 ENCSR684ZLL Control ChIP-seq /human-donors/ENCDO686OPO/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF533FLV/ 366806155 ENCODE Processing Pipeline 0e29c0697e1c39b05b6dcf9bd4240b87 https://www.encodeproject.org/files/ENCFF260EDJ/@@download/ENCFF260EDJ.bam released s3://encode-public/2017/11/09/67490752-b2f4-4775-aa9a-3cd1c14d3e27/ENCFF260EDJ.bam ENCODE3 GRCh38 archived ENCFF553IGQ bam bam redacted unfiltered alignments hg19 ENCSR684ZLL Control ChIP-seq /human-donors/ENCDO686OPO/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF533FLV/ 360685366 ENCODE Processing Pipeline 912037e422eb9686b1fe10af8bddd410 https://www.encodeproject.org/files/ENCFF553IGQ/@@download/ENCFF553IGQ.bam released s3://encode-public/2018/01/20/53687396-4bc9-44d5-bd85-579e924010f8/ENCFF553IGQ.bam ENCODE3 hg19 archived ENCFF325NEL bam bam redacted alignments hg19 ENCSR684ZLL Control ChIP-seq /human-donors/ENCDO686OPO/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF533FLV/ 289856787 ENCODE Processing Pipeline 50b5bd9ba985d2ebe5f672f5c350c768 https://www.encodeproject.org/files/ENCFF325NEL/@@download/ENCFF325NEL.bam released s3://encode-public/2018/01/20/ffed9325-6b3f-4af6-959e-d2a4ae708771/ENCFF325NEL.bam ENCODE3 hg19 archived ENCFF080XZH bam bam redacted alignments GRCh38 ENCSR684ZLL Control ChIP-seq /human-donors/ENCDO686OPO/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF816RXB/, /files/ENCFF110MCL/ 1736775354 ENCODE Processing Pipeline 83a24f41a6d5634d30e2efec73effbe9 https://www.encodeproject.org/files/ENCFF080XZH/@@download/ENCFF080XZH.bam released s3://encode-public/2021/01/28/461fa0ed-d6c0-4e90-8148-1a4bcefad161/ENCFF080XZH.bam ENCODE4 v1.7.0 GRCh38 released ENCFF047BQR fastq fastq reads ENCSR599UYD Control ChIP-seq /fly-donors/ENCDO483EQU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45328/'], '@type': ['Target', 'Item'], 'name': 'sens-dmelanogaster', 'label': 'sens', '@id': '/targets/sens-dmelanogaster/', 'title': 'sens (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b05861-b3fe-41d8-933d-7bd8de288aae', 'status': 'released'} dm3 3L 13383086 13402260 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1137293896 Kevin White, UChicago 30afa44eb6e8e2ba7f5318077c1d53f5 https://www.encodeproject.org/files/ENCFF047BQR/@@download/ENCFF047BQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF898SUQ/ released s3://encode-public/2015/07/23/3f9d1d4a-f112-4975-bad8-825477d51618/ENCFF047BQR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF274WFB bam bam alignments dm3 ENCSR599UYD Control ChIP-seq /fly-donors/ENCDO483EQU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45328/'], '@type': ['Target', 'Item'], 'name': 'sens-dmelanogaster', 'label': 'sens', '@id': '/targets/sens-dmelanogaster/', 'title': 'sens (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b05861-b3fe-41d8-933d-7bd8de288aae', 'status': 'released'} dm3 3L 13383086 13402260 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF047BQR/ 1652160340 Kevin White, UChicago 9437dae4744dbed8d56c9a79f511747b https://www.encodeproject.org/files/ENCFF274WFB/@@download/ENCFF274WFB.bam released s3://encode-public/2015/08/03/1b4c0c7c-5a05-41be-8d3e-8d360be6ae3f/ENCFF274WFB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF573OMP bigWig bigWig read-depth normalized signal dm3 ENCSR599UYD Control ChIP-seq /fly-donors/ENCDO483EQU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45328/'], '@type': ['Target', 'Item'], 'name': 'sens-dmelanogaster', 'label': 'sens', '@id': '/targets/sens-dmelanogaster/', 'title': 'sens (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b05861-b3fe-41d8-933d-7bd8de288aae', 'status': 'released'} dm3 3L 13383086 13402260 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF274WFB/ 15504898 Kevin White, UChicago 54b2abb14b3e1af94de7ca3683e59088 https://www.encodeproject.org/files/ENCFF573OMP/@@download/ENCFF573OMP.bigWig released s3://encode-public/2015/10/06/daac4cc7-4ba5-4565-8088-8187b82861d1/ENCFF573OMP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF429DPU bigWig bigWig signal of unique reads dm3 ENCSR599UYD Control ChIP-seq /fly-donors/ENCDO483EQU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45328/'], '@type': ['Target', 'Item'], 'name': 'sens-dmelanogaster', 'label': 'sens', '@id': '/targets/sens-dmelanogaster/', 'title': 'sens (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b05861-b3fe-41d8-933d-7bd8de288aae', 'status': 'released'} dm3 3L 13383086 13402260 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF274WFB/ 15513966 Kevin White, UChicago 3b459312e59efee3f05539a3fb7e82a8 https://www.encodeproject.org/files/ENCFF429DPU/@@download/ENCFF429DPU.bigWig released s3://encode-public/2015/10/06/1826bc0f-4619-4c12-a9ff-0a24f8ba184d/ENCFF429DPU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF714YGI bam bam alignments dm6 ENCSR599UYD Control ChIP-seq /fly-donors/ENCDO483EQU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45328/'], '@type': ['Target', 'Item'], 'name': 'sens-dmelanogaster', 'label': 'sens', '@id': '/targets/sens-dmelanogaster/', 'title': 'sens (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b05861-b3fe-41d8-933d-7bd8de288aae', 'status': 'released'} dm3 3L 13383086 13402260 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF047BQR/ 1642881425 Kevin White, UChicago 528368e98ff110a23f3d5e6011dc1dad https://www.encodeproject.org/files/ENCFF714YGI/@@download/ENCFF714YGI.bam released s3://encode-public/2016/04/22/3f69bdfe-13d7-4580-850f-53eece462253/ENCFF714YGI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF956KDX bigWig bigWig read-depth normalized signal dm6 ENCSR599UYD Control ChIP-seq /fly-donors/ENCDO483EQU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45328/'], '@type': ['Target', 'Item'], 'name': 'sens-dmelanogaster', 'label': 'sens', '@id': '/targets/sens-dmelanogaster/', 'title': 'sens (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b05861-b3fe-41d8-933d-7bd8de288aae', 'status': 'released'} dm3 3L 13383086 13402260 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714YGI/ 17610815 Kevin White, UChicago 1f5c99643f553c4fec8a4a30bb8996ec https://www.encodeproject.org/files/ENCFF956KDX/@@download/ENCFF956KDX.bigWig released s3://encode-public/2016/06/20/38733994-f26d-4672-9486-f6cd3adabd36/ENCFF956KDX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF893TPN bigWig bigWig signal of unique reads dm6 ENCSR599UYD Control ChIP-seq /fly-donors/ENCDO483EQU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45328/'], '@type': ['Target', 'Item'], 'name': 'sens-dmelanogaster', 'label': 'sens', '@id': '/targets/sens-dmelanogaster/', 'title': 'sens (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b05861-b3fe-41d8-933d-7bd8de288aae', 'status': 'released'} dm3 3L 13383086 13402260 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714YGI/ 17616542 Kevin White, UChicago c3ba3d939aa4f179c6596eab16c8e1ef https://www.encodeproject.org/files/ENCFF893TPN/@@download/ENCFF893TPN.bigWig released s3://encode-public/2016/06/20/2a89b079-5c2d-4c68-91a9-5c94881fbf75/ENCFF893TPN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF883ZEO fastq fastq reads ENCSR799VTP Control ChIP-seq /human-donors/ENCDO832DBZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 431145430 Bradley Bernstein, Broad aa1643451538762cfa689a4b83082ae3 SRA:SRR14638331 https://www.encodeproject.org/files/ENCFF883ZEO/@@download/ENCFF883ZEO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/2b819af4-ecab-4f66-983d-55143dd33435/ENCFF883ZEO.fastq.gz ENCFF200SXO fastq fastq reads ENCSR799VTP Control ChIP-seq /human-donors/ENCDO832DBZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 422142229 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SRA:SRR14638336 https://www.encodeproject.org/files/ENCFF311UYX/@@download/ENCFF311UYX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/83b956b4-2851-410c-9cbe-16a39b9b460a/ENCFF311UYX.fastq.gz ENCFF632EWA fastq fastq reads ENCSR799VTP Control ChIP-seq /human-donors/ENCDO832DBZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 786450857 Bradley Bernstein, Broad da6080b3f4955b3245e6019a8376105c SRA:SRR14638337 https://www.encodeproject.org/files/ENCFF632EWA/@@download/ENCFF632EWA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/48d52f32-71b1-4e6e-abe0-286dedf5c966/ENCFF632EWA.fastq.gz ENCFF132JRY fastq fastq reads ENCSR799VTP Control ChIP-seq /human-donors/ENCDO832DBZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 778373829 Bradley Bernstein, Broad af355cce061a90f2cb84da546026d763 SRA:SRR14638338 https://www.encodeproject.org/files/ENCFF132JRY/@@download/ENCFF132JRY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/aadcadbe-2854-4e44-91d7-353d15831e1b/ENCFF132JRY.fastq.gz ENCFF439GBZ bam bam unfiltered alignments GRCh38 ENCSR799VTP Control ChIP-seq /human-donors/ENCDO832DBZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF051KRI/, /files/ENCFF883ZEO/, /files/ENCFF311UYX/, /files/ENCFF110MCL/, /files/ENCFF454TWG/, /files/ENCFF132JRY/, /files/ENCFF083MQH/, /files/ENCFF632EWA/, /files/ENCFF200SXO/ 4645130781 ENCODE Processing Pipeline 9296b61afa83adb43296d789c8aa0ea6 https://www.encodeproject.org/files/ENCFF439GBZ/@@download/ENCFF439GBZ.bam released s3://encode-public/2021/04/09/44420009-c142-4b65-85c4-3f1d10935c04/ENCFF439GBZ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF571MQR bam bam alignments GRCh38 ENCSR799VTP Control ChIP-seq /human-donors/ENCDO832DBZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF051KRI/, /files/ENCFF883ZEO/, /files/ENCFF311UYX/, /files/ENCFF110MCL/, /files/ENCFF454TWG/, /files/ENCFF132JRY/, /files/ENCFF083MQH/, /files/ENCFF632EWA/, /files/ENCFF200SXO/ 3902329710 ENCODE Processing Pipeline 3f038bb43de812ed5d7743096504c93a https://www.encodeproject.org/files/ENCFF571MQR/@@download/ENCFF571MQR.bam released s3://encode-public/2021/04/09/b10da91c-8caa-4d81-a0d6-5dc223ff9699/ENCFF571MQR.bam ENCODE4 v1.8.0 GRCh38 released ENCFF985MZS fastq fastq reads ENCSR829OFH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 394300645 Kevin White, UChicago 1c1809f23759ad78a748d2917c7559dd https://www.encodeproject.org/files/ENCFF985MZS/@@download/ENCFF985MZS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/8a913928-2a5b-4739-ad73-f2278952160b/ENCFF985MZS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF300VNX bam bam alignments ce10 ENCSR829OFH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF985MZS/ 523003810 Kevin White, UChicago c86e4ffaa529709f65f5f718414a7f93 https://www.encodeproject.org/files/ENCFF300VNX/@@download/ENCFF300VNX.bam released s3://encode-public/2015/08/07/09f64dd8-f117-4054-907d-e654d7243fa5/ENCFF300VNX.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF452BAW bigWig bigWig read-depth normalized signal ce10 ENCSR829OFH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF300VNX/ 10041970 Kevin White, UChicago acdbc7c47588c79e829d987f26456454 https://www.encodeproject.org/files/ENCFF452BAW/@@download/ENCFF452BAW.bigWig released s3://encode-public/2015/10/02/29aed598-1379-4503-8081-6a21ace521fe/ENCFF452BAW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF758GDG bigWig bigWig signal of unique reads ce10 ENCSR829OFH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF300VNX/ 10081880 Kevin White, UChicago 26f4e5f9a014823e4ad070c98b1ba212 https://www.encodeproject.org/files/ENCFF758GDG/@@download/ENCFF758GDG.bigWig released s3://encode-public/2015/10/02/5b615c54-c5a0-444e-a6e5-08511ce330ea/ENCFF758GDG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF528LGJ bam bam alignments ce11 ENCSR829OFH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF985MZS/ 523411334 Kevin White, UChicago e7913a4386908eef46db4b46749e9c4f https://www.encodeproject.org/files/ENCFF528LGJ/@@download/ENCFF528LGJ.bam released s3://encode-public/2016/01/20/48088657-5c5b-4c68-a345-b76f1d617f47/ENCFF528LGJ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF788UTE bigWig bigWig signal of unique reads ce11 ENCSR829OFH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF528LGJ/ 10082586 Kevin White, UChicago 11bf51cf98e51afa857f984554710149 https://www.encodeproject.org/files/ENCFF788UTE/@@download/ENCFF788UTE.bigWig released s3://encode-public/2016/02/03/8497a82a-811a-4a88-86f4-ead64b2c626d/ENCFF788UTE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF715SEO bigWig bigWig read-depth normalized signal ce11 ENCSR829OFH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF528LGJ/ 10042778 Kevin White, UChicago 465e6e1b77f48a82ff33bcac62b61d92 https://www.encodeproject.org/files/ENCFF715SEO/@@download/ENCFF715SEO.bigWig released s3://encode-public/2016/02/03/0ceb9bc0-0739-47a1-ae87-e33b867674b7/ENCFF715SEO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF973CFJ tagAlign tagAlign alignments hg19 ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF969KKW/ 121348056 Anshul Kundaje, Stanford 84a321f51d216559c8134b5fe2544402 https://www.encodeproject.org/files/ENCFF973CFJ/@@download/ENCFF973CFJ.tagAlign.gz archived s3://encode-public/2016/03/30/d6707478-d70e-4c8e-a03d-96353d1c5f8e/ENCFF973CFJ.tagAlign.gz Lab custom hg19 archived low read depth insufficient read length ENCFF969KKW fastq fastq reads ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 single-ended 1536464032 Zhiping Weng, UMass b0240a8552dddda871602d66e93c44a9 SRA:SRR179766 https://www.encodeproject.org/files/ENCFF969KKW/@@download/ENCFF969KKW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/17/20cacfea-0c26-4d8b-ac0e-d9e5e125474f/ENCFF969KKW.fastq.gz low read depth insufficient read length ENCFF925TWO bam bam unfiltered alignments hg19 ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF969KKW/, /files/ENCFF807MUK/ 1727473807 ENCODE Processing Pipeline 3f6e93ff1c06ea2647c6ae7645ac02ac https://www.encodeproject.org/files/ENCFF925TWO/@@download/ENCFF925TWO.bam released s3://encode-public/2017/02/04/41962b36-1c7e-4f9d-809b-2037b755f7a1/ENCFF925TWO.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF294HZV bam bam alignments hg19 ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF969KKW/, /files/ENCFF807MUK/ 578890359 ENCODE Processing Pipeline d3a564e0fab545589cb7c6c831c858f6 https://www.encodeproject.org/files/ENCFF294HZV/@@download/ENCFF294HZV.bam released s3://encode-public/2017/02/04/0990781e-e05d-4648-8fb3-5b84cd89468d/ENCFF294HZV.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF572WNH bam bam unfiltered alignments GRCh38 ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF969KKW/, /files/ENCFF643CGH/ 1736451001 ENCODE Processing Pipeline c6e7a97ff96572863cba9996a80e0298 https://www.encodeproject.org/files/ENCFF572WNH/@@download/ENCFF572WNH.bam released s3://encode-public/2017/02/04/09723fc2-3a74-436a-9fe7-dc8c801b1ea6/ENCFF572WNH.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF462GOJ bam bam alignments GRCh38 ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF969KKW/, /files/ENCFF643CGH/ 578524968 ENCODE Processing Pipeline 13d8eccbde90f9419eb17cfefeab4082 https://www.encodeproject.org/files/ENCFF462GOJ/@@download/ENCFF462GOJ.bam released s3://encode-public/2017/02/04/bf73bc08-b39f-4c0e-bc4e-6a13abbc2e8f/ENCFF462GOJ.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF905KSQ bam bam unfiltered alignments GRCh38 ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF969KKW/ 1660613324 ENCODE Processing Pipeline 4a1289c6ef3e015903a6a8686076da64 https://www.encodeproject.org/files/ENCFF905KSQ/@@download/ENCFF905KSQ.bam released s3://encode-public/2020/10/08/23d7d37c-27dc-4fc8-9548-89c43037b209/ENCFF905KSQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF566LZC bam bam alignments GRCh38 ENCSR529SWW Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF969KKW/ 660374582 ENCODE Processing Pipeline 8b481cdae9f54fd1895ae45cf693ce34 https://www.encodeproject.org/files/ENCFF566LZC/@@download/ENCFF566LZC.bam released s3://encode-public/2020/10/08/051561fc-cae7-42e0-b5ae-9855a2ae26d0/ENCFF566LZC.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF463UEX fastq fastq reads ENCSR024OAH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 722603964 Kevin White, UChicago 22e9c56f7178eac594ceba8a67e486b5 https://www.encodeproject.org/files/ENCFF463UEX/@@download/ENCFF463UEX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/740d4a91-a828-4bc9-a743-9abd358ad800/ENCFF463UEX.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF445WHI bam bam alignments ce10 ENCSR024OAH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF463UEX/ 1033537034 Kevin White, UChicago 8413ca773bbf7a38721ca31af9c7a6a5 https://www.encodeproject.org/files/ENCFF445WHI/@@download/ENCFF445WHI.bam released s3://encode-public/2015/08/07/136eb004-a3d3-4c77-b49d-9b22143b6b5a/ENCFF445WHI.bam Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF893VAA bigWig bigWig signal of unique reads ce10 ENCSR024OAH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF445WHI/ 9979795 Kevin White, UChicago 30d4224e06e52608a6fbe4436893406c https://www.encodeproject.org/files/ENCFF893VAA/@@download/ENCFF893VAA.bigWig released s3://encode-public/2015/10/02/6bae25ae-5b3f-4ac1-b3aa-eacc8c8e1c13/ENCFF893VAA.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF776LBO bigWig bigWig read-depth normalized signal ce10 ENCSR024OAH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF445WHI/ 10025290 Kevin White, UChicago 91d83588e9a77be1b9cce24d95ff5459 https://www.encodeproject.org/files/ENCFF776LBO/@@download/ENCFF776LBO.bigWig released s3://encode-public/2015/10/02/192bd0fa-1b82-4381-b25f-169ce356c7b8/ENCFF776LBO.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF740KWL bam bam alignments ce11 ENCSR024OAH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF463UEX/ 1034415399 Kevin White, UChicago a26fd6cc1a9622c480ec9326afe35b2a https://www.encodeproject.org/files/ENCFF740KWL/@@download/ENCFF740KWL.bam released s3://encode-public/2016/01/16/752d58b7-80c6-41bc-8b83-268f33800762/ENCFF740KWL.bam Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF254OHT bigWig bigWig signal of unique reads ce11 ENCSR024OAH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF740KWL/ 9978597 Kevin White, UChicago 43a5add2dedc4a75e81aba8e79b5b19c https://www.encodeproject.org/files/ENCFF254OHT/@@download/ENCFF254OHT.bigWig released s3://encode-public/2016/02/03/486c2b72-85ab-412a-a83b-e25b103dab56/ENCFF254OHT.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF531OLH bigWig bigWig read-depth normalized signal ce11 ENCSR024OAH Control ChIP-seq /worm-donors/ENCDO918FAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174707/'], '@type': ['Target', 'Item'], 'name': 'lir-3-celegans', 'label': 'lir-3', '@id': '/targets/lir-3-celegans/', 'title': 'lir-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '36f4247d-6a6e-4efd-b097-6efb31661f84', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF740KWL/ 10021626 Kevin White, UChicago 42399f905ef80c6474053cfaaf5cf9ed https://www.encodeproject.org/files/ENCFF531OLH/@@download/ENCFF531OLH.bigWig released s3://encode-public/2016/02/03/77b6c8c1-7b38-47e7-8b22-36e2a8a62ab3/ENCFF531OLH.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF378JXW fastq fastq reads ENCSR064LXF Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2014-03-31 modENCODE 1 1_1 30 single-ended 304309568 David MacAlpine, Duke 3ee72658cef121fd6720d45c6309587a https://www.encodeproject.org/files/ENCFF378JXW/@@download/ENCFF378JXW.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2016/01/29/9725dfdb-0eba-46a6-8ce0-87e80a086b2f/ENCFF378JXW.fastq.gz lacking processed data ENCFF808IWW fastq fastq reads ENCSR096QCF Control ChIP-seq /human-donors/ENCDO359XWR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 1078257586 Bradley Bernstein, Broad 1bccdded91386fef6368ee637989efdb SRA:SRR14636943 https://www.encodeproject.org/files/ENCFF808IWW/@@download/ENCFF808IWW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/9b0174f3-f168-49fd-b465-e3f39b2e95db/ENCFF808IWW.fastq.gz ENCFF660MNU fastq fastq reads ENCSR096QCF Control ChIP-seq /human-donors/ENCDO359XWR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 359299356 Bradley Bernstein, Broad 3dd9aa6d5abe035c504f014f26e7accc SRA:SRR14636939 https://www.encodeproject.org/files/ENCFF660MNU/@@download/ENCFF660MNU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/18b00be2-9890-4523-9661-6e76deeb54a9/ENCFF660MNU.fastq.gz ENCFF493QDH fastq fastq reads ENCSR096QCF Control ChIP-seq /human-donors/ENCDO359XWR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 375589218 Bradley Bernstein, Broad e39c019e9ee5e4b8509e1be83dce32cf 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https://www.encodeproject.org/files/ENCFF626YEL/@@download/ENCFF626YEL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/c08a262b-b3e7-4fb1-bad7-656d06536241/ENCFF626YEL.fastq.gz ENCFF284PRM fastq fastq reads ENCSR096QCF Control ChIP-seq /human-donors/ENCDO359XWR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 367654372 Bradley Bernstein, Broad e3555976c17289bda7ddf385b6ba03a6 SRA:SRR14636941 https://www.encodeproject.org/files/ENCFF284PRM/@@download/ENCFF284PRM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/22e0460a-26a1-4dfa-b153-832490eb8b59/ENCFF284PRM.fastq.gz ENCFF716RMF fastq fastq reads ENCSR096QCF Control ChIP-seq /human-donors/ENCDO359XWR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 1124599418 Bradley Bernstein, Broad f7d5fd84a21b9d6d4e398b489ca3d06e SRA:SRR14636946 https://www.encodeproject.org/files/ENCFF716RMF/@@download/ENCFF716RMF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/4cea6845-64ba-4b87-bd3b-dbe3c5b6862e/ENCFF716RMF.fastq.gz ENCFF739CBW fastq fastq reads ENCSR096QCF Control ChIP-seq /human-donors/ENCDO359XWR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 362040041 Bradley Bernstein, Broad 2e1aafe6abe2ec94a64d1c8d1427ec75 SRA:SRR14636942 https://www.encodeproject.org/files/ENCFF739CBW/@@download/ENCFF739CBW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/5823ec1c-3646-43a8-939d-b4538abc800a/ENCFF739CBW.fastq.gz ENCFF193IVO bam bam alignments GRCh38 ENCSR096QCF Control ChIP-seq /human-donors/ENCDO359XWR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF626YEL/, /files/ENCFF493QDH/, /files/ENCFF660MNU/, /files/ENCFF947UTC/, /files/ENCFF808IWW/, /files/ENCFF739CBW/, 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ENCFF740YGT fastq fastq reads ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 230779078 Michael Snyder, Stanford da808cc1387f47f110fe4b3641a1f81e https://www.encodeproject.org/files/ENCFF740YGT/@@download/ENCFF740YGT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/034b4937-12e4-4451-9dfb-13945b58a076/ENCFF740YGT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF064JGS fastq fastq reads ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 262913824 Michael Snyder, Stanford 104778e4ade6e411543799e87deec05a https://www.encodeproject.org/files/ENCFF064JGS/@@download/ENCFF064JGS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c00c93de-665b-45f8-86e4-8c3bf088b1e7/ENCFF064JGS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF203QNE bam bam alignments ce10 ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF740YGT/, /files/ENCFF064JGS/, /files/ENCFF987UMF/ 589400996 Kevin White, UChicago c418abae6774c29972e2e33b1152d414 https://www.encodeproject.org/files/ENCFF203QNE/@@download/ENCFF203QNE.bam released s3://encode-public/2016/10/18/7a921e7c-bd74-4178-b9b8-8a620817d947/ENCFF203QNE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF048PXM bam bam alignments ce11 ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF740YGT/, /files/ENCFF064JGS/, /files/ENCFF586MOL/ 589937968 Kevin White, UChicago ce8012e720e9d031d379f5b0efd189e3 https://www.encodeproject.org/files/ENCFF048PXM/@@download/ENCFF048PXM.bam released s3://encode-public/2016/10/19/a6b81fe3-5e2c-4784-abe0-d7912692eb46/ENCFF048PXM.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF667TNH bigWig bigWig read-depth normalized signal ce10 ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF203QNE/ 10034285 Kevin White, UChicago b82a5d2d67754baf66030cbbee963f62 https://www.encodeproject.org/files/ENCFF667TNH/@@download/ENCFF667TNH.bigWig released s3://encode-public/2016/10/20/50c415f0-b856-4c1c-a0a4-b57db421e0e3/ENCFF667TNH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF913AHB bigWig bigWig signal of unique reads ce10 ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF203QNE/ 10015894 Kevin White, UChicago 896b02a2f883fdabbfda13a00fd8c114 https://www.encodeproject.org/files/ENCFF913AHB/@@download/ENCFF913AHB.bigWig released s3://encode-public/2016/10/20/00fa26f7-58cb-4b50-92a5-dac72907fc47/ENCFF913AHB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF654SCC bigWig bigWig signal of unique reads ce11 ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF048PXM/ 10012179 Kevin White, UChicago fe89733aa88f401dbe4f9e67a79e8135 https://www.encodeproject.org/files/ENCFF654SCC/@@download/ENCFF654SCC.bigWig released s3://encode-public/2016/10/21/af8f104d-e9d4-48d5-a15a-5380223fd7a4/ENCFF654SCC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF960IQF bigWig bigWig read-depth normalized signal ce11 ENCSR849GNY Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF048PXM/ 10025868 Kevin White, UChicago a99bb19a376d0c3c7dabed458a9b7a96 https://www.encodeproject.org/files/ENCFF960IQF/@@download/ENCFF960IQF.bigWig released s3://encode-public/2016/10/21/1721906b-fce2-43a0-b028-ae47a1cdcdbb/ENCFF960IQF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF005OTS fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 339777820 Bradley Bernstein, Broad 238cdf948249d7a2826a19c8f1279bf6 SRA:SRR14637616 https://www.encodeproject.org/files/ENCFF005OTS/@@download/ENCFF005OTS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/6a5a0007-7f51-40db-a9b2-d706f662d91b/ENCFF005OTS.fastq.gz ENCFF572DOE fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 303113369 Bradley Bernstein, Broad 32e1743d0b177707d6eba6df1bc89574 SRA:SRR14637608 https://www.encodeproject.org/files/ENCFF572DOE/@@download/ENCFF572DOE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/4bc6b425-ba37-4b3e-adfa-4315ab7293eb/ENCFF572DOE.fastq.gz ENCFF452KVD fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 353337680 Bradley Bernstein, Broad bba5bdb894a1b22a299c10703ba3be7d SRA:SRR14637617 https://www.encodeproject.org/files/ENCFF452KVD/@@download/ENCFF452KVD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/5f037e31-5d61-4d6b-bbf3-65a61b49f2aa/ENCFF452KVD.fastq.gz ENCFF381VZP fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 333718579 Bradley Bernstein, Broad 77827847f826f221587a8ed0752788ae SRA:SRR14637618 https://www.encodeproject.org/files/ENCFF381VZP/@@download/ENCFF381VZP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/ead09adf-fc2f-4e3e-8e76-b4894a377d0c/ENCFF381VZP.fastq.gz ENCFF499OHG fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 337656064 Bradley Bernstein, Broad 440b7ae1e9be814d2b42fa1912322793 SRA:SRR14637619 https://www.encodeproject.org/files/ENCFF499OHG/@@download/ENCFF499OHG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/07a0b684-a659-463d-a029-b962fe4002b4/ENCFF499OHG.fastq.gz ENCFF948BHQ fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 335212314 Bradley Bernstein, Broad b9205600959f96ed1cdfa4b70182e7ac SRA:SRR14637609 https://www.encodeproject.org/files/ENCFF948BHQ/@@download/ENCFF948BHQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/a1d00209-6297-44fa-8028-36e6f386afca/ENCFF948BHQ.fastq.gz ENCFF992BVO fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 342418097 Bradley Bernstein, Broad 1f07add4c086364dde8fe36d982c093f SRA:SRR14637610 https://www.encodeproject.org/files/ENCFF992BVO/@@download/ENCFF992BVO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/0b96a058-da75-4c65-ab3e-157b741e7c73/ENCFF992BVO.fastq.gz ENCFF133HFC fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 340076247 Bradley Bernstein, Broad 4e6039e69d07ab94e13ffe0716e8ba76 SRA:SRR14637611 https://www.encodeproject.org/files/ENCFF133HFC/@@download/ENCFF133HFC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/138eb234-9b4a-49c1-8680-59ad34dd1df8/ENCFF133HFC.fastq.gz ENCFF324ZCT fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 336908105 Bradley Bernstein, Broad a585960b015b229d97f275cba80f6d8a SRA:SRR14637612 https://www.encodeproject.org/files/ENCFF324ZCT/@@download/ENCFF324ZCT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/dc90a3d8-060a-4857-822e-9f135b62d873/ENCFF324ZCT.fastq.gz ENCFF803HRX fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 302140956 Bradley Bernstein, Broad fc6fcb30bc199e713b3724d968bc7493 SRA:SRR14637613 https://www.encodeproject.org/files/ENCFF803HRX/@@download/ENCFF803HRX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/3ac431fc-eb53-49f4-89c4-64b99e167785/ENCFF803HRX.fastq.gz ENCFF268OMT fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 304989608 Bradley Bernstein, Broad c7248b6446bac04d9606ffdb31237dbf SRA:SRR14637614 https://www.encodeproject.org/files/ENCFF268OMT/@@download/ENCFF268OMT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/08b2bb06-af7b-4028-9e1d-cdd234fc7a10/ENCFF268OMT.fastq.gz ENCFF222JSS fastq fastq reads ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 303243555 Bradley Bernstein, Broad 1ed4fe368c64dcc752e1dbcac4f8a225 SRA:SRR14637615 https://www.encodeproject.org/files/ENCFF222JSS/@@download/ENCFF222JSS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/fbcd8bc3-1c4d-4e39-8649-94fd5724ffff/ENCFF222JSS.fastq.gz ENCFF575TSV bam bam unfiltered alignments GRCh38 ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF992BVO/, /files/ENCFF324ZCT/, /files/ENCFF572DOE/, /files/ENCFF005OTS/, /files/ENCFF110MCL/, /files/ENCFF268OMT/, /files/ENCFF133HFC/, /files/ENCFF803HRX/, /files/ENCFF222JSS/, /files/ENCFF499OHG/, /files/ENCFF948BHQ/, /files/ENCFF452KVD/, /files/ENCFF381VZP/ 3815366831 ENCODE Processing Pipeline b9424307e70c622651d8a280f7dd7476 https://www.encodeproject.org/files/ENCFF575TSV/@@download/ENCFF575TSV.bam released s3://encode-public/2021/04/09/af4ffbd6-43e7-44a3-8c81-ed8f932c1bc8/ENCFF575TSV.bam ENCODE4 v1.8.0 GRCh38 released ENCFF439GOT bam bam alignments GRCh38 ENCSR739QEI Control ChIP-seq /human-donors/ENCDO203ASI/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF992BVO/, /files/ENCFF324ZCT/, /files/ENCFF572DOE/, /files/ENCFF005OTS/, /files/ENCFF110MCL/, /files/ENCFF268OMT/, /files/ENCFF133HFC/, /files/ENCFF803HRX/, /files/ENCFF222JSS/, /files/ENCFF499OHG/, /files/ENCFF948BHQ/, /files/ENCFF452KVD/, /files/ENCFF381VZP/ 3182960574 ENCODE Processing Pipeline b383d3efa9c583b8736412c9e83d272e https://www.encodeproject.org/files/ENCFF439GOT/@@download/ENCFF439GOT.bam released s3://encode-public/2021/04/09/801f4aac-b1a5-4d6e-bb46-cf1602bc47f9/ENCFF439GOT.bam ENCODE4 v1.8.0 GRCh38 released ENCFF469QND fastq fastq reads ENCSR106DTT Control ChIP-seq /worm-donors/ENCDO421FNE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182756/'], '@type': ['Target', 'Item'], 'name': 'ceh-48-celegans', 'label': 'ceh-48', '@id': '/targets/ceh-48-celegans/', 'title': 'ceh-48 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e59db827-8bac-4bce-8422-729bc7c8ad7e', 'status': 'released'} ce11 IV 6793071 6827926 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1349138516 Kevin White, UChicago 3e41bfa0e7555ff6dbd1f902f4428fa4 https://www.encodeproject.org/files/ENCFF469QND/@@download/ENCFF469QND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/04b293db-3fc4-4694-a747-7679b8f257f3/ENCFF469QND.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF765QRO bam bam alignments ce10 ENCSR106DTT Control ChIP-seq /worm-donors/ENCDO421FNE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182756/'], '@type': ['Target', 'Item'], 'name': 'ceh-48-celegans', 'label': 'ceh-48', '@id': '/targets/ceh-48-celegans/', 'title': 'ceh-48 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e59db827-8bac-4bce-8422-729bc7c8ad7e', 'status': 'released'} ce11 IV 6793071 6827926 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF469QND/, /files/ENCFF987UMF/ 1751889715 Kevin White, UChicago a5cd3e00480782c0739ab59f5b57ed68 https://www.encodeproject.org/files/ENCFF765QRO/@@download/ENCFF765QRO.bam released s3://encode-public/2016/10/04/92a20150-f016-46f4-9a51-89a6087f8669/ENCFF765QRO.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF848GGY bam bam alignments ce11 ENCSR106DTT Control ChIP-seq /worm-donors/ENCDO421FNE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182756/'], '@type': ['Target', 'Item'], 'name': 'ceh-48-celegans', 'label': 'ceh-48', '@id': '/targets/ceh-48-celegans/', 'title': 'ceh-48 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e59db827-8bac-4bce-8422-729bc7c8ad7e', 'status': 'released'} ce11 IV 6793071 6827926 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF469QND/, /files/ENCFF586MOL/ 1753358157 Kevin White, UChicago efd69534aec01e92d67aae7059126dd4 https://www.encodeproject.org/files/ENCFF848GGY/@@download/ENCFF848GGY.bam released s3://encode-public/2016/10/05/226bc8b6-3269-4cea-9420-bb886001bd48/ENCFF848GGY.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF243WFS bigWig bigWig signal of unique reads ce10 ENCSR106DTT Control ChIP-seq /worm-donors/ENCDO421FNE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182756/'], '@type': ['Target', 'Item'], 'name': 'ceh-48-celegans', 'label': 'ceh-48', '@id': '/targets/ceh-48-celegans/', 'title': 'ceh-48 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e59db827-8bac-4bce-8422-729bc7c8ad7e', 'status': 'released'} ce11 IV 6793071 6827926 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF765QRO/ 9932550 Kevin White, UChicago 6095c527b4a36ba27cb898ffff901984 https://www.encodeproject.org/files/ENCFF243WFS/@@download/ENCFF243WFS.bigWig released s3://encode-public/2016/10/06/6856de21-0f29-4c54-b8c0-883213c0c26b/ENCFF243WFS.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF203XHJ bigWig bigWig read-depth normalized signal ce10 ENCSR106DTT Control ChIP-seq /worm-donors/ENCDO421FNE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182756/'], '@type': ['Target', 'Item'], 'name': 'ceh-48-celegans', 'label': 'ceh-48', '@id': '/targets/ceh-48-celegans/', 'title': 'ceh-48 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e59db827-8bac-4bce-8422-729bc7c8ad7e', 'status': 'released'} ce11 IV 6793071 6827926 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF765QRO/ 9911114 Kevin White, UChicago d0c241fcd046dec3a04a8593f5cb8184 https://www.encodeproject.org/files/ENCFF203XHJ/@@download/ENCFF203XHJ.bigWig released s3://encode-public/2016/10/06/12f9b8ee-3fdb-476b-a386-db3461c330e7/ENCFF203XHJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF709UJU bigWig bigWig signal of unique reads ce11 ENCSR106DTT Control ChIP-seq /worm-donors/ENCDO421FNE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182756/'], '@type': ['Target', 'Item'], 'name': 'ceh-48-celegans', 'label': 'ceh-48', '@id': '/targets/ceh-48-celegans/', 'title': 'ceh-48 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e59db827-8bac-4bce-8422-729bc7c8ad7e', 'status': 'released'} ce11 IV 6793071 6827926 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF848GGY/ 9932554 Kevin White, UChicago d4b75cc888a770d2a224915890b9793f https://www.encodeproject.org/files/ENCFF709UJU/@@download/ENCFF709UJU.bigWig released s3://encode-public/2016/10/06/f6e46a9d-088d-4e56-8650-3b785c3e7461/ENCFF709UJU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF580QGF bigWig bigWig read-depth normalized signal ce11 ENCSR106DTT Control ChIP-seq /worm-donors/ENCDO421FNE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 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/worm-donors/ENCDO845WEN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179192/'], '@type': ['Target', 'Item'], 'name': 'spr-1-celegans', 'label': 'spr-1', '@id': '/targets/spr-1-celegans/', 'title': 'spr-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7a57cae3-3dbc-4b61-b6c5-da2ef34bcc60', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 545055186 Kevin White, UChicago 98dd84b1c31c158f000f856e408e20ce https://www.encodeproject.org/files/ENCFF648SKP/@@download/ENCFF648SKP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/54cec61a-4ddd-4cd2-ac37-9f98e4de1124/ENCFF648SKP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF635VVF bam bam alignments ce10 ENCSR616DAV Control ChIP-seq /worm-donors/ENCDO845WEN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179192/'], '@type': ['Target', 'Item'], 'name': 'spr-1-celegans', 'label': 'spr-1', '@id': '/targets/spr-1-celegans/', 'title': 'spr-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7a57cae3-3dbc-4b61-b6c5-da2ef34bcc60', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF648SKP/ 789195871 Kevin White, UChicago ee7037e5daa0bc2a5476639cc7ba5768 https://www.encodeproject.org/files/ENCFF635VVF/@@download/ENCFF635VVF.bam released s3://encode-public/2015/08/07/061b690d-3aa3-415b-8c10-5826b61ebfc6/ENCFF635VVF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF469MTB bigWig bigWig read-depth normalized signal ce10 ENCSR616DAV Control ChIP-seq /worm-donors/ENCDO845WEN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179192/'], '@type': ['Target', 'Item'], 'name': 'spr-1-celegans', 'label': 'spr-1', '@id': '/targets/spr-1-celegans/', 'title': 'spr-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7a57cae3-3dbc-4b61-b6c5-da2ef34bcc60', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF635VVF/ 9962505 Kevin White, UChicago 84ce9dc9a8d8adcb81b9717384a867e5 https://www.encodeproject.org/files/ENCFF469MTB/@@download/ENCFF469MTB.bigWig released s3://encode-public/2015/10/02/94fe9163-4a87-4730-85c4-a1db12ea6591/ENCFF469MTB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF674PCY bigWig bigWig signal of unique reads ce10 ENCSR616DAV Control ChIP-seq /worm-donors/ENCDO845WEN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179192/'], '@type': ['Target', 'Item'], 'name': 'spr-1-celegans', 'label': 'spr-1', '@id': '/targets/spr-1-celegans/', 'title': 'spr-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7a57cae3-3dbc-4b61-b6c5-da2ef34bcc60', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF635VVF/ 9961332 Kevin White, UChicago acd92e3609ba5a21286758c74dfc860c https://www.encodeproject.org/files/ENCFF674PCY/@@download/ENCFF674PCY.bigWig released s3://encode-public/2015/10/02/2f69346a-48d4-4d8d-8802-8fccefb60ad9/ENCFF674PCY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF603LSA bam bam alignments ce11 ENCSR616DAV Control ChIP-seq /worm-donors/ENCDO845WEN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179192/'], '@type': ['Target', 'Item'], 'name': 'spr-1-celegans', 'label': 'spr-1', '@id': '/targets/spr-1-celegans/', 'title': 'spr-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7a57cae3-3dbc-4b61-b6c5-da2ef34bcc60', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF648SKP/ 789889112 Kevin White, UChicago 024d248301f8316c3296c2a57b38acca https://www.encodeproject.org/files/ENCFF603LSA/@@download/ENCFF603LSA.bam released s3://encode-public/2016/01/20/866ac1f5-2ad3-47b9-8ea3-9b3c1d566b71/ENCFF603LSA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF952IEK bigWig bigWig signal of unique reads ce11 ENCSR616DAV Control ChIP-seq /worm-donors/ENCDO845WEN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179192/'], '@type': ['Target', 'Item'], 'name': 'spr-1-celegans', 'label': 'spr-1', '@id': '/targets/spr-1-celegans/', 'title': 'spr-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7a57cae3-3dbc-4b61-b6c5-da2ef34bcc60', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF603LSA/ 9960465 Kevin White, UChicago e773b5b3701da24be895dc4c2adb727d https://www.encodeproject.org/files/ENCFF952IEK/@@download/ENCFF952IEK.bigWig released s3://encode-public/2016/02/03/2e1ae56a-72f2-4f9e-a0b3-bfe7dc745042/ENCFF952IEK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF277ZJC bigWig bigWig read-depth normalized signal ce11 ENCSR616DAV Control ChIP-seq /worm-donors/ENCDO845WEN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179192/'], '@type': ['Target', 'Item'], 'name': 'spr-1-celegans', 'label': 'spr-1', '@id': '/targets/spr-1-celegans/', 'title': 'spr-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '7a57cae3-3dbc-4b61-b6c5-da2ef34bcc60', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF603LSA/ 9962579 Kevin White, UChicago e323bb3c3c1ee5354be609bc4a5f26d6 https://www.encodeproject.org/files/ENCFF277ZJC/@@download/ENCFF277ZJC.bigWig released s3://encode-public/2016/02/03/8cdc745c-2a44-4303-96cd-407e46750f06/ENCFF277ZJC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF324XDQ fastq fastq reads ENCSR613JAK Control ChIP-seq /human-donors/ENCDO660TGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 295147432 Bradley Bernstein, Broad 46248f02ccb69f2be68296d211cc8bab SRA:SRR14636742 https://www.encodeproject.org/files/ENCFF324XDQ/@@download/ENCFF324XDQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/8a91c68b-e20c-426f-88df-a137ba35f1cd/ENCFF324XDQ.fastq.gz ENCFF153AHJ fastq fastq reads ENCSR613JAK Control ChIP-seq /human-donors/ENCDO660TGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 288040517 Bradley Bernstein, Broad d746aa01cbf2d924e3fdd1ec07f7f5c9 SRA:SRR14636743 https://www.encodeproject.org/files/ENCFF153AHJ/@@download/ENCFF153AHJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/56667d4c-ebb5-43bf-b05f-d4d38a399939/ENCFF153AHJ.fastq.gz ENCFF651MKX fastq fastq reads ENCSR613JAK Control ChIP-seq /human-donors/ENCDO660TGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 322344921 Bradley Bernstein, Broad a05e40e0730feda3253e07250f4ad0f2 SRA:SRR14636750 https://www.encodeproject.org/files/ENCFF651MKX/@@download/ENCFF651MKX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/a4121204-b7b3-4bd1-b931-b6deae15f5ae/ENCFF651MKX.fastq.gz ENCFF220MEX fastq fastq reads ENCSR613JAK Control ChIP-seq /human-donors/ENCDO660TGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens 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https://www.encodeproject.org/files/ENCFF601WHF/@@download/ENCFF601WHF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/41183c3f-2120-496e-a1c1-f33427d33461/ENCFF601WHF.fastq.gz ENCFF797IBU bam bam unfiltered alignments GRCh38 ENCSR613JAK Control ChIP-seq /human-donors/ENCDO660TGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF112EFB/, /files/ENCFF572WQO/, /files/ENCFF153AHJ/, /files/ENCFF853AIT/, /files/ENCFF245XLY/, /files/ENCFF601WHF/, /files/ENCFF658BIB/, /files/ENCFF324XDQ/, /files/ENCFF651MKX/, /files/ENCFF220MEX/, /files/ENCFF206YRI/, /files/ENCFF374NCH/, /files/ENCFF110MCL/ 3138126829 ENCODE Processing Pipeline d61657b422675204f523aa43767343be https://www.encodeproject.org/files/ENCFF797IBU/@@download/ENCFF797IBU.bam released s3://encode-public/2021/04/09/4a726831-9815-44bb-9fdf-481bc060954f/ENCFF797IBU.bam ENCODE4 v1.8.0 GRCh38 released ENCFF403MJC bam bam alignments GRCh38 ENCSR613JAK Control ChIP-seq /human-donors/ENCDO660TGP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF112EFB/, /files/ENCFF572WQO/, /files/ENCFF153AHJ/, /files/ENCFF853AIT/, /files/ENCFF245XLY/, /files/ENCFF601WHF/, /files/ENCFF658BIB/, /files/ENCFF324XDQ/, /files/ENCFF651MKX/, /files/ENCFF220MEX/, /files/ENCFF206YRI/, /files/ENCFF374NCH/, /files/ENCFF110MCL/ 2547058848 ENCODE Processing Pipeline 47f6e08d885cb96f037c20639162e7ba https://www.encodeproject.org/files/ENCFF403MJC/@@download/ENCFF403MJC.bam released s3://encode-public/2021/04/09/c5e7caf7-2e11-455f-8317-9da009e5d19d/ENCFF403MJC.bam ENCODE4 v1.8.0 GRCh38 released ENCFF445SQY fastq fastq reads ENCSR187HHD Control ChIP-seq /worm-donors/ENCDO767LRS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 726909375 Kevin White, UChicago d2e5124178064fcb3ae720777afe1312 https://www.encodeproject.org/files/ENCFF445SQY/@@download/ENCFF445SQY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/2e5ea758-830e-418a-ac02-43a7b9adfca8/ENCFF445SQY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF960NGM bam bam alignments ce10 ENCSR187HHD Control ChIP-seq /worm-donors/ENCDO767LRS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF445SQY/ 1040694316 Kevin White, UChicago d51f3a09359a9d66dea633d95cbdaccb https://www.encodeproject.org/files/ENCFF960NGM/@@download/ENCFF960NGM.bam released s3://encode-public/2015/08/19/bcdf8412-f324-49dd-86ae-73ebb89d170e/ENCFF960NGM.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF165GQR bigWig bigWig signal of unique reads ce10 ENCSR187HHD Control ChIP-seq /worm-donors/ENCDO767LRS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF960NGM/ 10009398 Kevin White, UChicago 38e81d9c167b1145d8f7067a2965c47d https://www.encodeproject.org/files/ENCFF165GQR/@@download/ENCFF165GQR.bigWig released s3://encode-public/2015/10/02/bf1600f5-bb0b-450c-9a62-2bd17c31e770/ENCFF165GQR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF630SSA bigWig bigWig read-depth normalized signal ce10 ENCSR187HHD Control ChIP-seq /worm-donors/ENCDO767LRS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF960NGM/ 10051810 Kevin White, UChicago 4f0b970adcf70c2a430bb03a7df35294 https://www.encodeproject.org/files/ENCFF630SSA/@@download/ENCFF630SSA.bigWig released s3://encode-public/2015/10/02/42a1a0f9-bcdd-4d72-b949-08c3d0fe9cb0/ENCFF630SSA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF467NOA bam bam alignments ce11 ENCSR187HHD Control ChIP-seq /worm-donors/ENCDO767LRS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF445SQY/ 1041560216 Kevin White, UChicago 7ffb6b2c00554e31b950efd00a3aab9a https://www.encodeproject.org/files/ENCFF467NOA/@@download/ENCFF467NOA.bam released s3://encode-public/2016/01/16/685b4b1f-ee60-417c-8aa9-42fda9a4e687/ENCFF467NOA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF992BFR bigWig bigWig signal of unique reads ce11 ENCSR187HHD Control ChIP-seq /worm-donors/ENCDO767LRS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF467NOA/ 10007109 Kevin White, UChicago 39d461c86375220c6c9122bb3320e1a3 https://www.encodeproject.org/files/ENCFF992BFR/@@download/ENCFF992BFR.bigWig released s3://encode-public/2016/02/03/20bbb44c-2afa-4fe7-ba0b-a76cbdcf7de7/ENCFF992BFR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF553CGF bigWig bigWig read-depth normalized signal ce11 ENCSR187HHD Control ChIP-seq /worm-donors/ENCDO767LRS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180927/'], '@type': ['Target', 'Item'], 'name': 'ets-4-celegans', 'label': 'ets-4', '@id': '/targets/ets-4-celegans/', 'title': 'ets-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'dc92af7a-58cb-4106-aff8-3f5979c54a79', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF467NOA/ 10049905 Kevin White, UChicago 020d052be60c32d8d79e05e116083344 https://www.encodeproject.org/files/ENCFF553CGF/@@download/ENCFF553CGF.bigWig released s3://encode-public/2016/02/03/c53ac1a4-f70c-432b-ae55-39c412a9a0d0/ENCFF553CGF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF600HFO fastq fastq reads ENCSR167WDQ Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 132369230 Kevin White, UChicago 5e5d57160f8afaa87b6e49d527728aee https://www.encodeproject.org/files/ENCFF600HFO/@@download/ENCFF600HFO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF592RHD/ released s3://encode-public/2015/07/30/a5699bfd-30d8-4954-a9ce-ece9718b96d7/ENCFF600HFO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF906GGX bam bam alignments ce10 ENCSR167WDQ Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF600HFO/ 175171539 Kevin White, UChicago 27bdaa65960e853c2f4330c7e987f863 https://www.encodeproject.org/files/ENCFF906GGX/@@download/ENCFF906GGX.bam released s3://encode-public/2015/08/19/ae1b3b85-d69d-45cc-a7b6-481881dac262/ENCFF906GGX.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF916JUA bigWig bigWig read-depth normalized signal ce10 ENCSR167WDQ Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF906GGX/ 10020686 Kevin White, UChicago 7f1737b44f663183563caa304d0367c4 https://www.encodeproject.org/files/ENCFF916JUA/@@download/ENCFF916JUA.bigWig released s3://encode-public/2015/10/02/8d18ba4b-501b-4a40-b2b0-15b33b030861/ENCFF916JUA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF963BVP bigWig bigWig signal of unique reads ce10 ENCSR167WDQ Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF906GGX/ 10026168 Kevin White, UChicago 894ee337f6ec5b8f4c580ec68ff56972 https://www.encodeproject.org/files/ENCFF963BVP/@@download/ENCFF963BVP.bigWig released s3://encode-public/2015/10/02/0a43f09e-2670-4697-9c38-a805e9cb8a5c/ENCFF963BVP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF677WYJ bam bam alignments ce11 ENCSR167WDQ Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF600HFO/ 175372930 Kevin White, UChicago 66e3e0fd957da2e34b1f34643f105e94 https://www.encodeproject.org/files/ENCFF677WYJ/@@download/ENCFF677WYJ.bam released s3://encode-public/2016/01/16/8a12ab91-c845-4809-87f0-5ea223a80bed/ENCFF677WYJ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF666ZLU bigWig bigWig signal of unique reads ce11 ENCSR167WDQ Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF677WYJ/ 10026417 Kevin White, UChicago 171b79ec779c670cf38950fb06e988a8 https://www.encodeproject.org/files/ENCFF666ZLU/@@download/ENCFF666ZLU.bigWig released s3://encode-public/2016/02/03/b571b023-d918-4e04-97d8-80a0c5add0ba/ENCFF666ZLU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF349GVU bigWig bigWig read-depth normalized signal ce11 ENCSR167WDQ Control ChIP-seq /worm-donors/ENCDO642UEL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179947/'], '@type': ['Target', 'Item'], 'name': 'F23B12.7-celegans', 'label': 'F23B12.7', '@id': '/targets/F23B12.7-celegans/', 'title': 'F23B12.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'bd3ff1c3-0d82-4cc2-8aed-eb1e0c9b0923', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF677WYJ/ 10016739 Kevin White, UChicago 9def9270091ec2245876fc495b03c84e https://www.encodeproject.org/files/ENCFF349GVU/@@download/ENCFF349GVU.bigWig released s3://encode-public/2016/02/03/ea580b1d-5cc0-4c82-bdf9-93eaa4e7fb5d/ENCFF349GVU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF841BAF fastq fastq reads ENCSR365RFY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF385YGD/ 3046149149 Michael Snyder, Stanford 4cf20d564c67d8e9ebfe5baf1df11259 SRA:SRR16809533 https://www.encodeproject.org/files/ENCFF841BAF/@@download/ENCFF841BAF.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/a8f776b2-b55e-4953-8a19-10138e621038/ENCFF841BAF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF385YGD fastq fastq reads ENCSR365RFY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF841BAF/ 3183213499 Michael Snyder, Stanford 75d4b1fde47bf7a34631054448a5a98d SRA:SRR16809533 https://www.encodeproject.org/files/ENCFF385YGD/@@download/ENCFF385YGD.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/f0f80601-5178-4a9c-a3fa-a7b0770dea18/ENCFF385YGD.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF621CUK bam bam unfiltered alignments GRCh38 ENCSR365RFY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF841BAF/, /files/ENCFF110MCL/, /files/ENCFF385YGD/ 5257259982 ENCODE Processing Pipeline 0af2a9c313ab4b5817af454433455857 https://www.encodeproject.org/files/ENCFF621CUK/@@download/ENCFF621CUK.bam released s3://encode-public/2021/05/27/b9473713-cb5f-40e1-8170-fc7ce064c7cf/ENCFF621CUK.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF996EGZ bam bam alignments GRCh38 ENCSR365RFY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF841BAF/, /files/ENCFF110MCL/, /files/ENCFF385YGD/ 3767562869 ENCODE Processing Pipeline 3ac0b70552d1965089f92a5d83be47e8 https://www.encodeproject.org/files/ENCFF996EGZ/@@download/ENCFF996EGZ.bam released s3://encode-public/2021/05/27/4598914c-b5b4-4f8e-aea7-c398d6b4f47e/ENCFF996EGZ.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF298OWD tagAlign tagAlign alignments hg19 ENCSR405VDU Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF819XIA/, /files/ENCFF951BTP/, /files/ENCFF393SYM/, /files/ENCFF461XSL/ 237299954 Anshul Kundaje, Stanford 00ea52598d3edec59956e6a806459f98 https://www.encodeproject.org/files/ENCFF298OWD/@@download/ENCFF298OWD.tagAlign.gz archived s3://encode-public/2016/03/30/437d88b2-faaf-46e0-b926-b6a4b45a74e4/ENCFF298OWD.tagAlign.gz Lab custom hg19 archived low read length ENCFF245QQG bam bam redacted unfiltered alignments hg19 ENCSR405VDU Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF951BTP/, /files/ENCFF461XSL/, /files/ENCFF807MUK/, /files/ENCFF819XIA/, /files/ENCFF393SYM/ 714225416 ENCODE Processing Pipeline 6447b7f6bcbf66fc76d1c87cfea0e7f4 https://www.encodeproject.org/files/ENCFF245QQG/@@download/ENCFF245QQG.bam released s3://encode-public/2018/01/24/5ada6ae1-bc0d-4399-a2cf-655b4dbec24f/ENCFF245QQG.bam ENCODE3 hg19 archived low read length ENCFF146SWY bam bam redacted unfiltered alignments GRCh38 ENCSR405VDU Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF951BTP/, /files/ENCFF461XSL/, /files/ENCFF643CGH/, /files/ENCFF819XIA/, /files/ENCFF393SYM/ 721663958 ENCODE Processing Pipeline a67be6bf9656dbe6b1bb2dce4c583acf https://www.encodeproject.org/files/ENCFF146SWY/@@download/ENCFF146SWY.bam released s3://encode-public/2018/01/24/7e4fa92d-2b3d-4687-a9c2-1dc66297e641/ENCFF146SWY.bam ENCODE3 GRCh38 archived low read length ENCFF807ZCI bam bam redacted alignments GRCh38 ENCSR405VDU Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF951BTP/, /files/ENCFF461XSL/, /files/ENCFF643CGH/, /files/ENCFF819XIA/, /files/ENCFF393SYM/ 508988236 ENCODE Processing Pipeline 3b9749b895c1fc273072051c0de74152 https://www.encodeproject.org/files/ENCFF807ZCI/@@download/ENCFF807ZCI.bam released s3://encode-public/2018/01/24/c78991f4-cb46-461b-90c5-8aa5a1b37ad7/ENCFF807ZCI.bam ENCODE3 GRCh38 archived low read length ENCFF843SOW bam bam redacted alignments hg19 ENCSR405VDU Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF951BTP/, /files/ENCFF461XSL/, /files/ENCFF807MUK/, /files/ENCFF819XIA/, /files/ENCFF393SYM/ 508988024 ENCODE Processing Pipeline 822929855d70a2bcbbf6413da3d24b8a https://www.encodeproject.org/files/ENCFF843SOW/@@download/ENCFF843SOW.bam released s3://encode-public/2018/01/24/91d46176-0ce4-458a-ba3f-6f61319aa925/ENCFF843SOW.bam ENCODE3 hg19 archived low read length ENCFF902FTJ bam bam redacted alignments GRCh38 ENCSR405VDU Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF951BTP/, /files/ENCFF110MCL/, /files/ENCFF393SYM/, /files/ENCFF819XIA/, /files/ENCFF461XSL/ 1487167605 ENCODE Processing Pipeline 6d1f094172415727018a7cd66f385fdf https://www.encodeproject.org/files/ENCFF902FTJ/@@download/ENCFF902FTJ.bam released s3://encode-public/2021/01/27/cd77669a-698d-409c-9f0e-95f79028d86a/ENCFF902FTJ.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF454IJD tagAlign tagAlign alignments hg19 ENCSR315NIO Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR1270624/ 191126825 Anshul Kundaje, Stanford 7f27c470c508a5af1d72b460e158184b https://www.encodeproject.org/files/ENCFF454IJD/@@download/ENCFF454IJD.tagAlign.gz archived s3://encode-public/2016/03/30/8bd01fe3-05d1-4713-b8e1-4c9641067767/ENCFF454IJD.tagAlign.gz Lab custom hg19 archived low read length ENCFF319RXV bam bam redacted unfiltered alignments GRCh38 ENCSR315NIO Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF819ZTY/ 337890379 ENCODE Processing Pipeline daaa6d52a7aee270904991c71179ddfe https://www.encodeproject.org/files/ENCFF319RXV/@@download/ENCFF319RXV.bam released s3://encode-public/2017/10/16/fe39d355-1212-487d-8dff-92a53f988123/ENCFF319RXV.bam ENCODE3 GRCh38 archived low read length ENCFF899JWW bam bam redacted alignments GRCh38 ENCSR315NIO Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF819ZTY/ 181742795 ENCODE Processing Pipeline 223d8fbd7d2e609a3d62562925cd967b https://www.encodeproject.org/files/ENCFF899JWW/@@download/ENCFF899JWW.bam released s3://encode-public/2017/10/16/4e331df8-b95f-446b-a9b2-a4d88d214475/ENCFF899JWW.bam ENCODE3 GRCh38 archived low read length ENCFF958BYK bam bam redacted alignments hg19 ENCSR315NIO Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF819ZTY/ 149759260 ENCODE Processing Pipeline 0c4f73a156e569f923e568969aed3f50 https://www.encodeproject.org/files/ENCFF958BYK/@@download/ENCFF958BYK.bam released s3://encode-public/2018/01/20/8974c548-e4ed-4797-8914-2bef73890aa8/ENCFF958BYK.bam ENCODE3 hg19 archived low read length ENCFF972YDH bam bam redacted unfiltered alignments hg19 ENCSR315NIO Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF819ZTY/ 225671138 ENCODE Processing Pipeline a20d53953321e63742afab019a7166c5 https://www.encodeproject.org/files/ENCFF972YDH/@@download/ENCFF972YDH.bam released s3://encode-public/2018/01/20/58d9b01e-3c21-450b-8d51-bb1706517291/ENCFF972YDH.bam ENCODE3 hg19 archived low read length ENCFF611NSO bam bam redacted alignments GRCh38 ENCSR315NIO Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF494MPT/ 1067048636 ENCODE Processing Pipeline 4c10704742cb831dcb1785e1536ccc04 https://www.encodeproject.org/files/ENCFF611NSO/@@download/ENCFF611NSO.bam released s3://encode-public/2021/01/28/6c0dbe8b-bb0d-4cf9-a705-1f4925d38eae/ENCFF611NSO.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF816XEW tagAlign tagAlign alignments hg19 ENCSR687HYO Control ChIP-seq /human-donors/ENCDO832GKP/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF229EVL/ 81603185 Anshul Kundaje, Stanford 0431873f595ce6fbcca96bfffeec4637 https://www.encodeproject.org/files/ENCFF816XEW/@@download/ENCFF816XEW.tagAlign.gz archived s3://encode-public/2016/03/30/1ac1b45f-a9bb-48fb-94e0-a9d6fd9ded36/ENCFF816XEW.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF187VUX bam bam redacted alignments GRCh38 ENCSR687HYO Control ChIP-seq /human-donors/ENCDO832GKP/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF229EVL/ 156472595 ENCODE Processing Pipeline 82e477580d903fe3592fbb9128927889 https://www.encodeproject.org/files/ENCFF187VUX/@@download/ENCFF187VUX.bam released s3://encode-public/2018/01/18/b41c5d2f-782d-46a4-8f3e-5878610098e4/ENCFF187VUX.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF752PGK bam bam redacted unfiltered alignments GRCh38 ENCSR687HYO Control ChIP-seq /human-donors/ENCDO832GKP/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF229EVL/ 251528237 ENCODE Processing Pipeline 69b11fb3d904d4b4317ca77d0026725f https://www.encodeproject.org/files/ENCFF752PGK/@@download/ENCFF752PGK.bam released s3://encode-public/2018/01/18/d3d16e89-7f45-4404-a4e1-53d7849b703a/ENCFF752PGK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF258MKZ bam bam redacted alignments hg19 ENCSR687HYO Control ChIP-seq /human-donors/ENCDO832GKP/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF229EVL/ 156475749 ENCODE Processing Pipeline e49beb19e421c3db6f95a0b5a4ead90e https://www.encodeproject.org/files/ENCFF258MKZ/@@download/ENCFF258MKZ.bam released s3://encode-public/2018/01/18/1c0e2d02-cf8f-433f-8292-5e6edffef491/ENCFF258MKZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF536TJU bam bam redacted unfiltered alignments hg19 ENCSR687HYO Control ChIP-seq /human-donors/ENCDO832GKP/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF229EVL/ 249284351 ENCODE Processing Pipeline 50956090a0456476f959b6deb289d5bb https://www.encodeproject.org/files/ENCFF536TJU/@@download/ENCFF536TJU.bam released s3://encode-public/2018/01/18/3e18fd8d-1b5d-4892-a2df-4b54e3c0f335/ENCFF536TJU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF139CJD bam bam redacted alignments GRCh38 ENCSR687HYO Control ChIP-seq /human-donors/ENCDO832GKP/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF229EVL/, /files/ENCFF110MCL/ 474791739 ENCODE Processing Pipeline b1dbdb5ec5028fa6528b00f01313ed6e https://www.encodeproject.org/files/ENCFF139CJD/@@download/ENCFF139CJD.bam released s3://encode-public/2021/01/27/85064e95-dbfe-416f-8ac7-a0e66896c42d/ENCFF139CJD.bam ENCODE4 v1.7.0 GRCh38 released low read depth, low read length ENCFF001NNN fastq fastq reads ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 single-ended 1269638131 Michael Snyder, Stanford 9fd24411e480bc08b657585d6f59f519 SRA:SRR10049567 https://www.encodeproject.org/files/ENCFF001NNN/@@download/ENCFF001NNN.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/d8ff87b7-05e1-4521-94b7-844df6d9405e/ENCFF001NNN.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NNR bigWig bigWig signal mm9 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 /files/ENCFF001NNX/ 337948373 Michael Snyder, Stanford 0c788c4c1a3bdfe50e1f01084287eb6b https://www.encodeproject.org/files/ENCFF001NNR/@@download/ENCFF001NNR.bigWig archived s3://encode-public/2012/08/01/36992db1-d039-4280-8e1c-9b2905215eb9/ENCFF001NNR.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NNX bam bam alignments mm9 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 27 /files/ENCFF001NNN/ 955912982 Michael Snyder, Stanford 9ed316c3288be7a3b74ece734db5e152 https://www.encodeproject.org/files/ENCFF001NNX/@@download/ENCFF001NNX.bam archived s3://encode-public/2012/08/01/bc91af79-3c6a-4de0-80b5-a0b18b64ddeb/ENCFF001NNX.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NNP fastq fastq reads ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 single-ended 1033176802 Michael Snyder, Stanford c514504604eff5cfe025b36b3926dad5 SRA:SRR10049566 https://www.encodeproject.org/files/ENCFF001NNP/@@download/ENCFF001NNP.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/62da9d27-27ff-4ea5-9afb-975ee890f920/ENCFF001NNP.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF074LDJ bam bam alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001NNP/ 547688744 ENCODE Processing Pipeline d479a97cc9bd5fff732a1a6f79c853df https://www.encodeproject.org/files/ENCFF074LDJ/@@download/ENCFF074LDJ.bam released s3://encode-public/2016/04/28/f18c3412-9fde-4068-9f99-181f6d58f953/ENCFF074LDJ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF966YUS bam bam alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NNN/ 756319187 ENCODE Processing Pipeline 07e77a62fa09a9c6b0f83581d0fd02ec https://www.encodeproject.org/files/ENCFF966YUS/@@download/ENCFF966YUS.bam released s3://encode-public/2016/04/28/71f16277-21a0-49bd-adac-6106c28185bc/ENCFF966YUS.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF196DMU bam bam unfiltered alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001NNP/ 1099886928 ENCODE Processing Pipeline a1d70ed3970f651ed6140595bd4cfff4 https://www.encodeproject.org/files/ENCFF196DMU/@@download/ENCFF196DMU.bam released s3://encode-public/2016/07/06/8873ab57-c5ed-469d-b705-298563017c25/ENCFF196DMU.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF938WHJ bam bam unfiltered alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NNN/ 1354474958 ENCODE Processing Pipeline d97dd18c8e06101d0d59be7e0040f5eb https://www.encodeproject.org/files/ENCFF938WHJ/@@download/ENCFF938WHJ.bam released s3://encode-public/2016/07/06/f2d835c2-540b-454f-aa83-115fe742d7af/ENCFF938WHJ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF765KSY bam bam unfiltered alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NNP/ 1078496892 ENCODE Processing Pipeline 47a365677cd9588723ad22ea47e3b5a2 https://www.encodeproject.org/files/ENCFF765KSY/@@download/ENCFF765KSY.bam released s3://encode-public/2020/10/12/0f418591-d4dd-49c5-bb55-03b7e88365cf/ENCFF765KSY.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF740TUE bam bam alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NNP/ 580344966 ENCODE Processing Pipeline 2696a7162125ff7648f29678e0f21f97 https://www.encodeproject.org/files/ENCFF740TUE/@@download/ENCFF740TUE.bam released s3://encode-public/2020/10/12/566d92aa-e9b6-45e1-8c5f-a69f24a985eb/ENCFF740TUE.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF224HWC bam bam alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NNN/ 802492161 ENCODE Processing Pipeline 3f4200e278716f77ce28879e6c165ce6 https://www.encodeproject.org/files/ENCFF224HWC/@@download/ENCFF224HWC.bam released s3://encode-public/2020/10/12/a55415d2-ac54-43a0-a718-68c2d1e9aa31/ENCFF224HWC.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF307ICT bam bam unfiltered alignments mm10 ENCSR000ADJ Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NNN/ 1327921825 ENCODE Processing Pipeline 28a2090058ec74a0eb7c21def61b6005 https://www.encodeproject.org/files/ENCFF307ICT/@@download/ENCFF307ICT.bam released s3://encode-public/2020/10/12/8f59c7ca-0963-4152-855f-842a3aec3299/ENCFF307ICT.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF440IEP fastq fastq reads ENCSR702YWZ Control ChIP-seq /fly-donors/ENCDO384HCU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/338395/'], '@type': ['Target', 'Item'], 'name': 'CG33213-dmelanogaster', 'label': 'CG33213', '@id': '/targets/CG33213-dmelanogaster/', 'title': 'CG33213 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c92b4e2e-151f-4598-8245-7ce24aca60d8', 'status': 'released'} dm3 3R 23734756 23753822 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 913152383 Kevin White, UChicago 6d25f92d0d6d16ab35ce202b9cebd9ac https://www.encodeproject.org/files/ENCFF440IEP/@@download/ENCFF440IEP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/8810c0c9-e40c-4b38-a9e1-c75761cb4c96/ENCFF440IEP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF960KAE bam bam alignments dm3 ENCSR702YWZ Control ChIP-seq /fly-donors/ENCDO384HCU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/338395/'], '@type': ['Target', 'Item'], 'name': 'CG33213-dmelanogaster', 'label': 'CG33213', '@id': '/targets/CG33213-dmelanogaster/', 'title': 'CG33213 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c92b4e2e-151f-4598-8245-7ce24aca60d8', 'status': 'released'} dm3 3R 23734756 23753822 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF440IEP/ 1341085298 Kevin White, UChicago 731c943f39c1f9636446aa10598a1709 https://www.encodeproject.org/files/ENCFF960KAE/@@download/ENCFF960KAE.bam released s3://encode-public/2015/08/03/13331aad-31e2-41a8-a61c-9e6fa676067b/ENCFF960KAE.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF554XSX bigWig bigWig read-depth normalized signal dm3 ENCSR702YWZ Control ChIP-seq /fly-donors/ENCDO384HCU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/338395/'], '@type': ['Target', 'Item'], 'name': 'CG33213-dmelanogaster', 'label': 'CG33213', '@id': '/targets/CG33213-dmelanogaster/', 'title': 'CG33213 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c92b4e2e-151f-4598-8245-7ce24aca60d8', 'status': 'released'} dm3 3R 23734756 23753822 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF960KAE/ 15512260 Kevin White, UChicago 9a2175eca054384531a876bb0298bcb1 https://www.encodeproject.org/files/ENCFF554XSX/@@download/ENCFF554XSX.bigWig released s3://encode-public/2015/10/05/98b84d22-1dc1-4dad-92a5-958c2727b2be/ENCFF554XSX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF113AVG bigWig bigWig signal of unique reads dm3 ENCSR702YWZ Control ChIP-seq /fly-donors/ENCDO384HCU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/338395/'], '@type': ['Target', 'Item'], 'name': 'CG33213-dmelanogaster', 'label': 'CG33213', '@id': '/targets/CG33213-dmelanogaster/', 'title': 'CG33213 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c92b4e2e-151f-4598-8245-7ce24aca60d8', 'status': 'released'} dm3 3R 23734756 23753822 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF960KAE/ 15475641 Kevin White, UChicago 274ef77306752242792350dde15d2fc5 https://www.encodeproject.org/files/ENCFF113AVG/@@download/ENCFF113AVG.bigWig released s3://encode-public/2015/10/05/5bf8ff75-6a07-41ed-8c63-16eeb1978457/ENCFF113AVG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF843BZR bam bam alignments dm6 ENCSR702YWZ Control ChIP-seq /fly-donors/ENCDO384HCU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/338395/'], '@type': ['Target', 'Item'], 'name': 'CG33213-dmelanogaster', 'label': 'CG33213', '@id': '/targets/CG33213-dmelanogaster/', 'title': 'CG33213 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c92b4e2e-151f-4598-8245-7ce24aca60d8', 'status': 'released'} dm3 3R 23734756 23753822 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF440IEP/ 1335746238 Kevin White, UChicago 7955bcb0a768a90377ad53fcdc0dad54 https://www.encodeproject.org/files/ENCFF843BZR/@@download/ENCFF843BZR.bam released s3://encode-public/2016/04/21/b6376961-cb39-46ff-8ce4-5006df0b1507/ENCFF843BZR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF151LFA bigWig bigWig signal of unique reads dm6 ENCSR702YWZ Control ChIP-seq /fly-donors/ENCDO384HCU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/338395/'], '@type': ['Target', 'Item'], 'name': 'CG33213-dmelanogaster', 'label': 'CG33213', '@id': '/targets/CG33213-dmelanogaster/', 'title': 'CG33213 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c92b4e2e-151f-4598-8245-7ce24aca60d8', 'status': 'released'} dm3 3R 23734756 23753822 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF843BZR/ 17572853 Kevin White, UChicago b694faeba6ece402dd96bf9dd130787e https://www.encodeproject.org/files/ENCFF151LFA/@@download/ENCFF151LFA.bigWig released s3://encode-public/2016/06/20/e3c83285-0b47-492a-b122-bc7a89ce36c1/ENCFF151LFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF254WVO bigWig bigWig read-depth normalized signal dm6 ENCSR702YWZ Control ChIP-seq /fly-donors/ENCDO384HCU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/338395/'], '@type': ['Target', 'Item'], 'name': 'CG33213-dmelanogaster', 'label': 'CG33213', '@id': '/targets/CG33213-dmelanogaster/', 'title': 'CG33213 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c92b4e2e-151f-4598-8245-7ce24aca60d8', 'status': 'released'} dm3 3R 23734756 23753822 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF843BZR/ 17647034 Kevin White, UChicago 6c5e9b4f52e394049a0777d30e8c628b https://www.encodeproject.org/files/ENCFF254WVO/@@download/ENCFF254WVO.bigWig released s3://encode-public/2016/06/20/1846d61b-d160-4624-a6c0-683ef97ef171/ENCFF254WVO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF207NSJ fastq fastq reads ENCSR072SOX Control ChIP-seq /fly-donors/ENCDO019NLH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33077/'], '@type': ['Target', 'Item'], 'name': 'CG1529-dmelanogaster', 'label': 'CG1529', '@id': '/targets/CG1529-dmelanogaster/', 'title': 'CG1529 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b0659785-3df5-4ad4-a00b-ee9d91222553', 'status': 'released'} dm3 X 20888312 20908098 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 703712702 Kevin White, UChicago ade3108d77ca69b6cd26cdf2c0be7a5c https://www.encodeproject.org/files/ENCFF207NSJ/@@download/ENCFF207NSJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF156YSY/ released s3://encode-public/2018/02/01/38e05a59-c873-4826-8934-9908ef6fa455/ENCFF207NSJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF380TXR bam bam alignments dm6 ENCSR072SOX Control ChIP-seq /fly-donors/ENCDO019NLH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33077/'], '@type': ['Target', 'Item'], 'name': 'CG1529-dmelanogaster', 'label': 'CG1529', '@id': '/targets/CG1529-dmelanogaster/', 'title': 'CG1529 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b0659785-3df5-4ad4-a00b-ee9d91222553', 'status': 'released'} dm3 X 20888312 20908098 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF207NSJ/, /files/ENCFF479RCH/ 1398153718 Kevin White, UChicago cc846718f23bf7bad6fb8672c1c85ca2 https://www.encodeproject.org/files/ENCFF380TXR/@@download/ENCFF380TXR.bam released s3://encode-public/2018/02/03/698a6077-bfde-45ae-ae8e-46d297d5685c/ENCFF380TXR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF708OCJ bigWig bigWig read-depth normalized signal dm6 ENCSR072SOX Control ChIP-seq /fly-donors/ENCDO019NLH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33077/'], '@type': ['Target', 'Item'], 'name': 'CG1529-dmelanogaster', 'label': 'CG1529', '@id': '/targets/CG1529-dmelanogaster/', 'title': 'CG1529 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b0659785-3df5-4ad4-a00b-ee9d91222553', 'status': 'released'} dm3 X 20888312 20908098 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF380TXR/ 3235434 Kevin White, UChicago 520d07829567fc5b105c869adb757102 https://www.encodeproject.org/files/ENCFF708OCJ/@@download/ENCFF708OCJ.bigWig released s3://encode-public/2018/02/03/e0771315-fba3-4d41-8996-1a5dfa0467df/ENCFF708OCJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF615KNX bigWig bigWig signal of unique reads dm6 ENCSR072SOX Control ChIP-seq /fly-donors/ENCDO019NLH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33077/'], '@type': ['Target', 'Item'], 'name': 'CG1529-dmelanogaster', 'label': 'CG1529', '@id': '/targets/CG1529-dmelanogaster/', 'title': 'CG1529 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b0659785-3df5-4ad4-a00b-ee9d91222553', 'status': 'released'} dm3 X 20888312 20908098 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF380TXR/ 3243714 Kevin White, UChicago c4882803ba3a5b027f258eb756fb07c2 https://www.encodeproject.org/files/ENCFF615KNX/@@download/ENCFF615KNX.bigWig released s3://encode-public/2018/02/03/b336e8d2-2092-44ff-b1ae-71d44b8191bb/ENCFF615KNX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000POS bam bam alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PPC/ 2316952531 Richard Myers, HAIB fbbe0e246ae78047341ea3acc78498a3 https://www.encodeproject.org/files/ENCFF000POS/@@download/ENCFF000POS.bam archived s3://encode-public/2012/01/23/0fe0f5f5-8511-4926-a3e3-886d11745c96/ENCFF000POS.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000POT bam bam alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 /files/ENCFF000PPF/ 1666898845 Richard Myers, HAIB f5c7d403a3a6a3ee55788289b0cccb50 https://www.encodeproject.org/files/ENCFF000POT/@@download/ENCFF000POT.bam archived s3://encode-public/2012/01/23/a68588b7-1d3b-4fd6-8c4c-f3a811e24c8f/ENCFF000POT.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000POW bigWig bigWig raw signal hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 13249401 Richard Myers, HAIB 4a4bdba5de514b1e68fec681f9d63bd5 https://www.encodeproject.org/files/ENCFF000POW/@@download/ENCFF000POW.bigWig archived s3://encode-public/2012/01/23/c4a0428d-2e63-4c35-92f6-86bd6b9b1836/ENCFF000POW.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000POX bigWig bigWig raw signal hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 219565810 Richard Myers, HAIB c3ff334eaa3ec82d052a705e75300aa7 https://www.encodeproject.org/files/ENCFF000POX/@@download/ENCFF000POX.bigWig archived s3://encode-public/2012/01/23/867e0230-1850-428a-8096-3526410394eb/ENCFF000POX.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000POY bam bam alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF000PPI/ 2147344486 Richard Myers, HAIB dd43f75d724dbdac606db3d15aea99a4 https://www.encodeproject.org/files/ENCFF000POY/@@download/ENCFF000POY.bam archived s3://encode-public/2012/01/23/745910c6-e902-4a65-96a4-5033d8063698/ENCFF000POY.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000POZ bigWig bigWig raw signal hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 332488280 Richard Myers, HAIB 1a8f38c80f19c3aadd245d9979c79dee https://www.encodeproject.org/files/ENCFF000POZ/@@download/ENCFF000POZ.bigWig archived s3://encode-public/2012/01/23/02ca66e9-fc40-4d94-a7bd-f8d3750a4e10/ENCFF000POZ.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000PPC fastq fastq reads ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 2232931531 Richard Myers, HAIB 0d553acc7a2021467e9dc1532b6aa2dc https://www.encodeproject.org/files/ENCFF000PPC/@@download/ENCFF000PPC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/303750fd-effb-4eec-8001-d9bcf5eb6cc2/ENCFF000PPC.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF000PPF fastq fastq reads ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 single-ended 1700113734 Richard Myers, HAIB 06c5c7645efc918f9551cd82e1895567 https://www.encodeproject.org/files/ENCFF000PPF/@@download/ENCFF000PPF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/376f60e4-35e8-43f7-855f-456ee5a79d28/ENCFF000PPF.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF000PPI fastq fastq reads ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 single-ended 2255184447 Richard Myers, HAIB 6d656bf00f27e4a0f7221bd4d297cffc https://www.encodeproject.org/files/ENCFF000PPI/@@download/ENCFF000PPI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/996d994e-becb-46d4-b646-b027abce1d32/ENCFF000PPI.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF481NVO bam bam alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 /files/ENCFF000PPF/, /files/ENCFF807MUK/ 1295884120 ENCODE Processing Pipeline 329e6ffa10253d37f7b6c853c2fbd99c https://www.encodeproject.org/files/ENCFF481NVO/@@download/ENCFF481NVO.bam released s3://encode-public/2016/12/15/222172a6-9fee-4c07-94c7-34190176d283/ENCFF481NVO.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF956NCM bam bam unfiltered alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 /files/ENCFF000PPF/, /files/ENCFF807MUK/ 1793199804 ENCODE Processing Pipeline 31b300010850bae50c1e2d74718bccec https://www.encodeproject.org/files/ENCFF956NCM/@@download/ENCFF956NCM.bam released s3://encode-public/2016/12/15/7a70eabf-67db-46f7-af1b-226d42e16652/ENCFF956NCM.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF505NPR bam bam alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 /files/ENCFF000PPF/, /files/ENCFF643CGH/ 1296052927 ENCODE Processing Pipeline 2e0b3728fd3a1fefb618f0aebedcdc97 https://www.encodeproject.org/files/ENCFF505NPR/@@download/ENCFF505NPR.bam released s3://encode-public/2016/12/15/98c82948-b9b3-4715-bf08-a6c187d419d5/ENCFF505NPR.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF357JEK bam bam unfiltered alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 50 /files/ENCFF000PPF/, /files/ENCFF643CGH/ 1796589461 ENCODE Processing Pipeline ae511058b3061fb0b700754a7c6947a7 https://www.encodeproject.org/files/ENCFF357JEK/@@download/ENCFF357JEK.bam released s3://encode-public/2016/12/15/faa32010-da59-4601-a098-36941b320e2a/ENCFF357JEK.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF490RCV bam bam unfiltered alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000PPC/ 2499088666 ENCODE Processing Pipeline 5578cc5de29c1fe28d6881c9be54b750 https://www.encodeproject.org/files/ENCFF490RCV/@@download/ENCFF490RCV.bam released s3://encode-public/2016/12/15/4604c460-1961-46ad-a98f-8694f06b557e/ENCFF490RCV.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF776OAY bam bam alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000PPC/ 1514823842 ENCODE Processing Pipeline c3cc75ee48c732e708c94e4f4ed33f53 https://www.encodeproject.org/files/ENCFF776OAY/@@download/ENCFF776OAY.bam released s3://encode-public/2016/12/15/808a00c9-954f-49fa-990f-16b19abe998f/ENCFF776OAY.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF587ORK bam bam unfiltered alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000PPC/ 2509035746 ENCODE Processing Pipeline f5238a61e556e474bbb64e61d814975e https://www.encodeproject.org/files/ENCFF587ORK/@@download/ENCFF587ORK.bam released s3://encode-public/2016/12/15/e6d1abbd-a440-4cfe-8814-d3d3dd70d736/ENCFF587ORK.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF764CYY bam bam unfiltered alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF643CGH/, /files/ENCFF000PPI/ 2303452492 ENCODE Processing Pipeline 54abcb7d2e3090d18f1f73d84fbd9a89 https://www.encodeproject.org/files/ENCFF764CYY/@@download/ENCFF764CYY.bam released s3://encode-public/2016/12/15/70e23a60-9fcc-4f9c-b3b1-318abb85dd74/ENCFF764CYY.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF678ETY bam bam alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF807MUK/, /files/ENCFF000PPI/ 1675612215 ENCODE Processing Pipeline 4d9e967bbd8dd6cf5f86cd2347d7aeb1 https://www.encodeproject.org/files/ENCFF678ETY/@@download/ENCFF678ETY.bam released s3://encode-public/2016/12/15/0113565e-fc2e-464d-82ef-aaa2a288bf00/ENCFF678ETY.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF705DPZ bam bam alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000PPC/ 1514567521 ENCODE Processing Pipeline f285e8e046c1949ffffc5ef906f11f89 https://www.encodeproject.org/files/ENCFF705DPZ/@@download/ENCFF705DPZ.bam released s3://encode-public/2016/12/15/3417d830-e896-4370-a68a-9fcb5c8f1c8a/ENCFF705DPZ.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF823OYY bam bam unfiltered alignments hg19 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF807MUK/, /files/ENCFF000PPI/ 2299529925 ENCODE Processing Pipeline a2a668603e9720e09c6a5d4e6b49baa0 https://www.encodeproject.org/files/ENCFF823OYY/@@download/ENCFF823OYY.bam released s3://encode-public/2016/12/15/58663d42-adb4-4933-a849-e4d243690275/ENCFF823OYY.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF032FZF bam bam alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF643CGH/, /files/ENCFF000PPI/ 1675639907 ENCODE Processing Pipeline 88a94fe25993851bddd53e124664d733 https://www.encodeproject.org/files/ENCFF032FZF/@@download/ENCFF032FZF.bam released s3://encode-public/2016/12/15/74764a3c-93b4-4d0e-8a35-6ec4afa63ba2/ENCFF032FZF.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF379RHD bam bam alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF000PPI/, /files/ENCFF110MCL/ 1425689034 ENCODE Processing Pipeline 0a8f1b60624e9a05bfe0b5ee36f1b595 https://www.encodeproject.org/files/ENCFF379RHD/@@download/ENCFF379RHD.bam released s3://encode-public/2020/10/27/433b77b8-8cf2-4c0a-958f-cb6a845245df/ENCFF379RHD.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF584AKH bam bam unfiltered alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PPC/, /files/ENCFF110MCL/ 2468406779 ENCODE Processing Pipeline 8daa5438a5f9981e00d87425e1e23cb7 https://www.encodeproject.org/files/ENCFF584AKH/@@download/ENCFF584AKH.bam released s3://encode-public/2020/10/27/e3c59bfd-6077-4b10-8e44-a87ff94864fa/ENCFF584AKH.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF085OKO bam bam unfiltered alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000PPF/, /files/ENCFF110MCL/ 1475252461 ENCODE Processing Pipeline 3a97fef878a1ac6c11c880705143159d https://www.encodeproject.org/files/ENCFF085OKO/@@download/ENCFF085OKO.bam released s3://encode-public/2020/10/27/978b6307-5cfd-458e-8045-30ca4492aff6/ENCFF085OKO.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF196WDI bam bam unfiltered alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF000PPI/, /files/ENCFF110MCL/ 1873978696 ENCODE Processing Pipeline a6ca75b955f10302f9c4326dcf74e7db https://www.encodeproject.org/files/ENCFF196WDI/@@download/ENCFF196WDI.bam released s3://encode-public/2020/10/27/666c7ad4-5d38-442c-a056-ba18f092fc09/ENCFF196WDI.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF434VWY bam bam alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PPC/, /files/ENCFF110MCL/ 1722783682 ENCODE Processing Pipeline f14347c6f63107dca875a9f3088b0ba2 https://www.encodeproject.org/files/ENCFF434VWY/@@download/ENCFF434VWY.bam released s3://encode-public/2020/10/27/d6b4e836-93d8-44c0-9f39-ee2646ef8626/ENCFF434VWY.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF430MNY bam bam alignments GRCh38 ENCSR000BPH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000PPF/, /files/ENCFF110MCL/ 1081589612 ENCODE Processing Pipeline 3a6d5a4d6cf51850a539c56248bce1a0 https://www.encodeproject.org/files/ENCFF430MNY/@@download/ENCFF430MNY.bam released s3://encode-public/2020/10/27/645d91ab-18d7-43da-b9b0-a968b9e397c2/ENCFF430MNY.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF324KNZ fastq fastq reads ENCSR380CVK Control ChIP-seq /fly-donors/ENCDO785USL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39875/'], '@type': ['Target', 'Item'], 'name': 'CG9705-dmelanogaster', 'label': 'CG9705', '@id': '/targets/CG9705-dmelanogaster/', 'title': 'CG9705 (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': '9a3882ec-3ad1-4b41-a55e-befdcaf09bc7', 'status': 'released'} dm3 3L 16758871 16779690 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1021610194 Kevin White, UChicago 3c9f3a7d7fdb7a00cfb423fa5d2e97f1 https://www.encodeproject.org/files/ENCFF324KNZ/@@download/ENCFF324KNZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF095RQD/ released s3://encode-public/2018/02/01/c50bb37c-a018-4d55-9982-4052d6dedecb/ENCFF324KNZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF056XMA bam bam alignments dm6 ENCSR380CVK Control ChIP-seq /fly-donors/ENCDO785USL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39875/'], '@type': ['Target', 'Item'], 'name': 'CG9705-dmelanogaster', 'label': 'CG9705', '@id': '/targets/CG9705-dmelanogaster/', 'title': 'CG9705 (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': '9a3882ec-3ad1-4b41-a55e-befdcaf09bc7', 'status': 'released'} dm3 3L 16758871 16779690 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF324KNZ/, /files/ENCFF479RCH/ 1359499679 Kevin White, UChicago 2462ef288922a3296b73dc278b6d27cf https://www.encodeproject.org/files/ENCFF056XMA/@@download/ENCFF056XMA.bam released s3://encode-public/2018/02/02/b0691634-b3b0-4a4c-901e-972ca49fc03b/ENCFF056XMA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF305GGE bigWig bigWig read-depth normalized signal dm6 ENCSR380CVK Control ChIP-seq /fly-donors/ENCDO785USL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39875/'], '@type': ['Target', 'Item'], 'name': 'CG9705-dmelanogaster', 'label': 'CG9705', '@id': '/targets/CG9705-dmelanogaster/', 'title': 'CG9705 (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': '9a3882ec-3ad1-4b41-a55e-befdcaf09bc7', 'status': 'released'} dm3 3L 16758871 16779690 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF056XMA/ 17665525 Kevin White, UChicago b513bfbb8bbf3f2b3b6d9a30fb0ab945 https://www.encodeproject.org/files/ENCFF305GGE/@@download/ENCFF305GGE.bigWig released s3://encode-public/2018/02/02/3cead22e-092d-4bf5-ac96-dfd6954f93a8/ENCFF305GGE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF023PQT bigWig bigWig signal of unique reads dm6 ENCSR380CVK Control ChIP-seq /fly-donors/ENCDO785USL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39875/'], '@type': ['Target', 'Item'], 'name': 'CG9705-dmelanogaster', 'label': 'CG9705', '@id': '/targets/CG9705-dmelanogaster/', 'title': 'CG9705 (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': '9a3882ec-3ad1-4b41-a55e-befdcaf09bc7', 'status': 'released'} dm3 3L 16758871 16779690 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF056XMA/ 17647051 Kevin White, UChicago 1bb058325812add156ba53de3538bb6a https://www.encodeproject.org/files/ENCFF023PQT/@@download/ENCFF023PQT.bigWig released s3://encode-public/2018/02/02/f7898329-eb20-47a9-a05d-b14364aca260/ENCFF023PQT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000ZHZ fastq fastq reads ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 1057160416 Kevin Struhl, HMS 7b53917aeccd0672f396d315cef06ea2 https://www.encodeproject.org/files/ENCFF000ZHZ/@@download/ENCFF000ZHZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/2726c605-7d06-45a0-8700-01593433095c/ENCFF000ZHZ.fastq.gz low read length ENCFF000ZIL bigWig bigWig signal hg19 ENCSR000DOL Control ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1275918373 Kevin Struhl, HMS 07f30dbb5df95fd92cd0c045af37ea37 https://www.encodeproject.org/files/ENCFF000ZIL/@@download/ENCFF000ZIL.bigWig archived s3://encode-public/2010/10/20/49bb9a6d-4375-40ac-b93f-58d3c1102f5a/ENCFF000ZIL.bigWig Lab custom hg19 archived low read length ENCFF000ZIO bam bam alignments hg19 ENCSR000DOL Control ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 34 3446070891 Kevin Struhl, HMS 388206fec78e0c65af7fb4b331569a4c https://www.encodeproject.org/files/ENCFF000ZIO/@@download/ENCFF000ZIO.bam archived s3://encode-public/2010/10/20/dfcab21b-07c2-4e9a-83e7-afd7cbae77dd/ENCFF000ZIO.bam Lab custom hg19 archived low read length ENCFF000ZIJ fastq fastq reads ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 1262529400 Kevin Struhl, HMS cde5386c7e482faf76e69655780e815d https://www.encodeproject.org/files/ENCFF000ZIJ/@@download/ENCFF000ZIJ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/5a3fae40-4b0e-42a8-a92a-4604011404b4/ENCFF000ZIJ.fastq.gz low read length ENCFF000ZID fastq fastq reads ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 906152632 Kevin Struhl, HMS dc2d9d33dfc26c0decbf3678def42cf4 https://www.encodeproject.org/files/ENCFF000ZID/@@download/ENCFF000ZID.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/ea117eb7-9ada-41eb-a81f-09223ccb1ec0/ENCFF000ZID.fastq.gz low read length ENCFF000ZIH fastq fastq reads ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 1133054282 Kevin Struhl, HMS 2bde1bd31427764d826183bb2974dcdd https://www.encodeproject.org/files/ENCFF000ZIH/@@download/ENCFF000ZIH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/c8b7f1da-27a7-441e-b36e-fae0c292ccce/ENCFF000ZIH.fastq.gz low read length ENCFF000ZIB fastq fastq reads ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 1053867371 Kevin Struhl, HMS 83d047bcc735077a782a07d6975d6d1a https://www.encodeproject.org/files/ENCFF000ZIB/@@download/ENCFF000ZIB.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/97e66cfc-f894-4cd8-b0a8-cc64052a59c1/ENCFF000ZIB.fastq.gz low read length ENCFF000ZIF fastq fastq reads ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 831008041 Kevin Struhl, HMS ff313a8e6cda3b323a92e91b63b22e8b https://www.encodeproject.org/files/ENCFF000ZIF/@@download/ENCFF000ZIF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/77f51ce2-bb64-4b1c-8834-71f47a9bf9a7/ENCFF000ZIF.fastq.gz low read length ENCFF942DSY bam bam unfiltered alignments GRCh38 ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZIF/, /files/ENCFF000ZID/, /files/ENCFF000ZIJ/, /files/ENCFF000ZIH/ 6859942071 ENCODE Processing Pipeline bbb08f79740de4e95a005bdafbb7528b https://www.encodeproject.org/files/ENCFF942DSY/@@download/ENCFF942DSY.bam released s3://encode-public/2016/10/26/a6858613-6d6c-42b6-aac2-6b3e971db3bf/ENCFF942DSY.bam ENCODE3 GRCh38 archived low read length ENCFF252KTP bam bam alignments GRCh38 ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZIF/, /files/ENCFF000ZID/, /files/ENCFF000ZIJ/, /files/ENCFF000ZIH/ 4846489469 ENCODE Processing Pipeline 6b26a11b7657d77f503f46b3e596e7c1 https://www.encodeproject.org/files/ENCFF252KTP/@@download/ENCFF252KTP.bam released s3://encode-public/2016/10/26/2dd88208-2b8e-425e-81ed-ffdfa56a4a61/ENCFF252KTP.bam ENCODE3 GRCh38 archived low read length ENCFF747QNW bam bam alignments GRCh38 ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000ZIH/, /files/ENCFF000ZHZ/, /files/ENCFF110MCL/, /files/ENCFF000ZID/, /files/ENCFF000ZIJ/, /files/ENCFF000ZIF/, /files/ENCFF000ZIB/ 5213516360 ENCODE Processing Pipeline 0cdb7b31b5bd28d38ef44e5b6dbd51ce https://www.encodeproject.org/files/ENCFF747QNW/@@download/ENCFF747QNW.bam released s3://encode-public/2020/10/27/5129e3c1-ef85-436a-be7b-58fd0dd322d6/ENCFF747QNW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF532EKB bam bam unfiltered alignments GRCh38 ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000ZIH/, /files/ENCFF000ZHZ/, /files/ENCFF110MCL/, /files/ENCFF000ZID/, /files/ENCFF000ZIJ/, /files/ENCFF000ZIF/, /files/ENCFF000ZIB/ 6753480885 ENCODE Processing Pipeline 96d96aa81fc79c320a694f69ba1d322d https://www.encodeproject.org/files/ENCFF532EKB/@@download/ENCFF532EKB.bam released s3://encode-public/2020/10/27/e6efea48-6a56-457d-a215-84839ddfa870/ENCFF532EKB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF267QBT bam bam unfiltered alignments hg19 ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000ZHZ/, /files/ENCFF807MUK/, /files/ENCFF000ZIB/, /files/ENCFF000ZIF/, /files/ENCFF000ZID/, /files/ENCFF000ZIJ/, /files/ENCFF000ZIH/ 6819537232 ENCODE Processing Pipeline d54439ae7e677d8001611934ed4f4639 https://www.encodeproject.org/files/ENCFF267QBT/@@download/ENCFF267QBT.bam released s3://encode-public/2017/07/21/82ccf002-b6b3-46d4-82a1-cfa1301db3bc/ENCFF267QBT.bam ENCODE3 hg19 archived low read length ENCFF425RUE bam bam alignments hg19 ENCSR000DOL Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000ZHZ/, /files/ENCFF807MUK/, /files/ENCFF000ZIB/, /files/ENCFF000ZIF/, /files/ENCFF000ZID/, /files/ENCFF000ZIJ/, /files/ENCFF000ZIH/ 4846932567 ENCODE Processing Pipeline 050919636f843a65a19f0dd856587930 https://www.encodeproject.org/files/ENCFF425RUE/@@download/ENCFF425RUE.bam released s3://encode-public/2017/07/21/0c34142e-2fa2-49ad-9139-babedf71db4e/ENCFF425RUE.bam ENCODE3 hg19 archived low read length ENCFF175TOM tagAlign tagAlign alignments hg19 ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF217MRH/ 96183813 Anshul Kundaje, Stanford fdb56c3af0af3a99b953bd730f21952e https://www.encodeproject.org/files/ENCFF175TOM/@@download/ENCFF175TOM.tagAlign.gz archived s3://encode-public/2016/03/30/93cda5be-582c-46cf-b2c4-efa74be693fe/ENCFF175TOM.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF217MRH fastq fastq reads ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 569035010 Zhiping Weng, UMass 04cedeb0a81c231dd13a04494ed7763e SRA:SRR179701 https://www.encodeproject.org/files/ENCFF217MRH/@@download/ENCFF217MRH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/11/17/41cb6443-f217-4f39-8406-569f61c67d88/ENCFF217MRH.fastq.gz low read depth, low read length ENCFF289YEQ bam bam unfiltered alignments GRCh38 ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF217MRH/ 745064096 ENCODE Processing Pipeline 833f213d3278b37a711b0442c71ad527 https://www.encodeproject.org/files/ENCFF289YEQ/@@download/ENCFF289YEQ.bam released s3://encode-public/2016/12/19/a3a265ea-55f2-4382-8a71-20b91d8bfbe1/ENCFF289YEQ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF769RQH bam bam unfiltered alignments hg19 ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF217MRH/ 743042658 ENCODE Processing Pipeline 2435bc9fe5c412498ad8e7362f6130f4 https://www.encodeproject.org/files/ENCFF769RQH/@@download/ENCFF769RQH.bam released s3://encode-public/2016/12/19/dcb98e1a-7e35-4a0f-8444-8e1124c2e775/ENCFF769RQH.bam ENCODE3 hg19 archived low read depth, low read length ENCFF353DFP bam bam alignments GRCh38 ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF217MRH/ 442824507 ENCODE Processing Pipeline 16f189b416592c550189313c819b23cf https://www.encodeproject.org/files/ENCFF353DFP/@@download/ENCFF353DFP.bam released s3://encode-public/2016/12/19/e84185f0-d21c-411f-85e7-cea6254a0f83/ENCFF353DFP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF145IFQ bam bam alignments hg19 ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF217MRH/ 443040296 ENCODE Processing Pipeline ca10801773c3f9f1d208f6fedeca9ee8 https://www.encodeproject.org/files/ENCFF145IFQ/@@download/ENCFF145IFQ.bam released s3://encode-public/2016/12/19/f1958d14-3684-4d88-aff0-f3e4d00187a3/ENCFF145IFQ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF343XIS bam bam unfiltered alignments GRCh38 ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF217MRH/ 728088425 ENCODE Processing Pipeline a1b687de0f7b9b0fb02cfa7cebbfe92d https://www.encodeproject.org/files/ENCFF343XIS/@@download/ENCFF343XIS.bam released s3://encode-public/2020/10/08/9fcb018d-1f87-4395-a9f0-3c92fefebb51/ENCFF343XIS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF600JCD bam bam alignments GRCh38 ENCSR212SJH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF217MRH/ 495333205 ENCODE Processing Pipeline 008e3ef28c3e675f2f45a63e35cd5bc5 https://www.encodeproject.org/files/ENCFF600JCD/@@download/ENCFF600JCD.bam released s3://encode-public/2020/10/08/10614bbf-8d53-46f4-ab3e-cd5f2fd66ab2/ENCFF600JCD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF296MSA bam bam unfiltered alignments hg19 ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF001RVP/, /files/ENCFF807MUK/ 3592139724 ENCODE Processing Pipeline 306f688d776b0675e542b64cc0658527 https://www.encodeproject.org/files/ENCFF296MSA/@@download/ENCFF296MSA.bam released s3://encode-public/2018/02/22/1c7b18f7-4f94-43db-9f30-df20242a9605/ENCFF296MSA.bam ENCODE3 hg19 archived ENCFF001RVP fastq fastq reads ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 single-ended 3432653219 Richard Myers, HAIB d180655c73506b1864adaab53d9cf3fe SRA:SRR5339411 https://www.encodeproject.org/files/ENCFF001RVP/@@download/ENCFF001RVP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2013/11/01/9d1df5c7-f956-4234-8591-960ca47b8c57/ENCFF001RVP.fastq.gz ENCFF048VYQ bam bam alignments hg19 ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF001RVP/, /files/ENCFF807MUK/ 2757139028 ENCODE Processing Pipeline ef93b153b6d95ee8b1066a60aa0fc348 https://www.encodeproject.org/files/ENCFF048VYQ/@@download/ENCFF048VYQ.bam archived s3://encode-public/2015/10/28/26e5531c-cbaa-4e2e-b34a-0d0c7137f57a/ENCFF048VYQ.bam ENCODE3 hg19 archived ENCFF338DYR bam bam unfiltered alignments GRCh38 ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF001RVP/, /files/ENCFF643CGH/ 3602052555 ENCODE Processing Pipeline e86d8982ca5eacc3ee63bead1b05f792 https://www.encodeproject.org/files/ENCFF338DYR/@@download/ENCFF338DYR.bam released s3://encode-public/2016/05/06/16f970d7-b5c6-4e86-86a9-b0e4c1a4b4c9/ENCFF338DYR.bam ENCODE3 GRCh38 archived ENCFF121DUE bam bam alignments GRCh38 ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF001RVP/, /files/ENCFF643CGH/ 2757087840 ENCODE Processing Pipeline b9708f1831867988eebc284e3afb9de8 https://www.encodeproject.org/files/ENCFF121DUE/@@download/ENCFF121DUE.bam released s3://encode-public/2016/05/06/933d0a63-5063-4cdc-baef-a5995bf8cb85/ENCFF121DUE.bam ENCODE3 GRCh38 archived ENCFF578ISP bam bam alignments hg19 ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF001RVP/, /files/ENCFF807MUK/ 2757139057 ENCODE Processing Pipeline 06c099e41059873d6b60a17ef0c9c069 https://www.encodeproject.org/files/ENCFF578ISP/@@download/ENCFF578ISP.bam released s3://encode-public/2017/03/06/fcb78977-954e-4b8a-849b-b43465165fa2/ENCFF578ISP.bam ENCODE3 hg19 archived ENCFF005VIU bam bam unfiltered alignments GRCh38 ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF001RVP/ 3566567157 ENCODE Processing Pipeline 0155712539d5ff44c4f031728670529f https://www.encodeproject.org/files/ENCFF005VIU/@@download/ENCFF005VIU.bam released s3://encode-public/2020/11/05/3caaee53-55c7-4d73-9ef7-c69bd9353728/ENCFF005VIU.bam ENCODE4 v1.6.1 GRCh38 released ENCFF088DMI bam bam alignments GRCh38 ENCSR824WND Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF001RVP/ 2886617323 ENCODE Processing Pipeline d211b3c5c9ed5e0e1a06f0bcf1ce59b9 https://www.encodeproject.org/files/ENCFF088DMI/@@download/ENCFF088DMI.bam released s3://encode-public/2020/11/05/13ec7701-f7bc-483e-bf7b-1f3579d66ed9/ENCFF088DMI.bam ENCODE4 v1.6.1 GRCh38 released ENCFF001IEG fastq fastq reads ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 single-ended 229882249 Barbara Wold, Caltech 2cb320b206f655ac1792968c577d6d66 https://www.encodeproject.org/files/ENCFF001IEG/@@download/ENCFF001IEG.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/5d50d683-eff2-49f5-bb45-13b1d911cd84/ENCFF001IEG.fastq.gz low read depth insufficient read length ENCFF001IEJ bigWig bigWig signal mm9 ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 /files/ENCFF001IEK/ 88609706 Barbara Wold, Caltech a6cc5ca42bb44a3866a43f438627720a https://www.encodeproject.org/files/ENCFF001IEJ/@@download/ENCFF001IEJ.bigWig archived 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https://www.encodeproject.org/files/ENCFF001IEH/@@download/ENCFF001IEH.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/b0b05910-8ab8-4562-9e1c-5cc1bb61ffc4/ENCFF001IEH.fastq.gz low read depth insufficient read length ENCFF001IEI fastq fastq reads ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 single-ended 240351038 Barbara Wold, Caltech a6cdbf5d2fdf1ae53c0df9cfa61434fe https://www.encodeproject.org/files/ENCFF001IEI/@@download/ENCFF001IEI.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/6c2161c4-84cf-457c-93fb-45d2cc1ac4be/ENCFF001IEI.fastq.gz low read depth insufficient read length ENCFF823CBA bam bam unfiltered alignments mm10-minimal ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF001IEI/, /files/ENCFF806TVZ/, /files/ENCFF001IEH/, /files/ENCFF001IEG/ 890359190 ENCODE Processing Pipeline fc26bfeff3dbc7c741e083268a474c5d https://www.encodeproject.org/files/ENCFF823CBA/@@download/ENCFF823CBA.bam archived s3://encode-public/2015/11/18/0653c565-a406-4db1-8669-6f650feacdbf/ENCFF823CBA.bam ENCODE3 mm10-minimal archived low read depth insufficient read length ENCFF319ZGT bam bam alignments mm10 ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF018NEO/, /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ 433472947 ENCODE Processing Pipeline f02f85c71134bc2f4df56037aace7f08 https://www.encodeproject.org/files/ENCFF319ZGT/@@download/ENCFF319ZGT.bam released s3://encode-public/2016/10/26/4f0ee1da-7463-49a1-b4fd-9bf609ca20b9/ENCFF319ZGT.bam ENCODE3 mm10 archived low read depth insufficient read length ENCFF323CXM bam bam unfiltered alignments mm10 ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF018NEO/, /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ 890969377 ENCODE Processing Pipeline 782fc9bc419cfd307a40c471727742d2 https://www.encodeproject.org/files/ENCFF323CXM/@@download/ENCFF323CXM.bam released s3://encode-public/2016/10/26/e02cb4bf-9cf7-4f1b-a9b7-4cee0f3dc5a2/ENCFF323CXM.bam ENCODE3 mm10 archived low read depth insufficient read length ENCFF225PYM bam bam unfiltered alignments mm10 ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF309GLL/, /files/ENCFF001IEH/, /files/ENCFF001IEG/, /files/ENCFF001IEI/ 878394497 ENCODE Processing Pipeline 1f8fce9e3d071fc9dc57e622b6edad90 https://www.encodeproject.org/files/ENCFF225PYM/@@download/ENCFF225PYM.bam released s3://encode-public/2020/10/12/45025894-8a1d-402d-bf5c-4b2abd07d325/ENCFF225PYM.bam ENCODE4 v1.5.1 mm10 released low read depth insufficient read length ENCFF911IRI bam bam alignments mm10 ENCSR000AJP Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF309GLL/, /files/ENCFF001IEH/, /files/ENCFF001IEG/, /files/ENCFF001IEI/ 471619810 ENCODE Processing Pipeline 08d41f1e3eb512b2c301e13aa40d041b https://www.encodeproject.org/files/ENCFF911IRI/@@download/ENCFF911IRI.bam released s3://encode-public/2020/10/12/43c8dc33-f400-4388-8556-fa317e11f916/ENCFF911IRI.bam ENCODE4 v1.5.1 mm10 released low read depth insufficient read length ENCFF559YME fastq fastq reads ENCSR051HCW Control ChIP-seq /fly-donors/ENCDO934GPL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32723/'], '@type': ['Target', 'Item'], 'name': 'B-H2-dmelanogaster', 'label': 'B-H2', '@id': '/targets/B-H2-dmelanogaster/', 'title': 'B-H2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '92ed8f8f-2e98-4b75-a732-d4e138655afe', 'status': 'released'} dm3 X 17171479 17245727 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF559YME/, /files/ENCFF479RCH/ 1172981757 Kevin White, UChicago 1dfc2ce08b5b2d241f4942571c834db4 https://www.encodeproject.org/files/ENCFF160SFV/@@download/ENCFF160SFV.bam released s3://encode-public/2018/02/02/b6eb940c-1434-49a8-bbff-929993ede963/ENCFF160SFV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF068LPM bigWig bigWig read-depth normalized signal dm6 ENCSR051HCW Control ChIP-seq /fly-donors/ENCDO934GPL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32723/'], '@type': ['Target', 'Item'], 'name': 'B-H2-dmelanogaster', 'label': 'B-H2', '@id': '/targets/B-H2-dmelanogaster/', 'title': 'B-H2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '92ed8f8f-2e98-4b75-a732-d4e138655afe', 'status': 'released'} dm3 X 17171479 17245727 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF160SFV/ 17697952 Kevin White, UChicago d5772ceb7c13dbfe698922a52aeb9dbb https://www.encodeproject.org/files/ENCFF068LPM/@@download/ENCFF068LPM.bigWig released s3://encode-public/2018/02/02/ed46e4e2-5774-4c78-aff7-d11a23061914/ENCFF068LPM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF760VEU bigWig bigWig signal of unique reads dm6 ENCSR051HCW Control ChIP-seq /fly-donors/ENCDO934GPL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32723/'], '@type': ['Target', 'Item'], 'name': 'B-H2-dmelanogaster', 'label': 'B-H2', '@id': '/targets/B-H2-dmelanogaster/', 'title': 'B-H2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '92ed8f8f-2e98-4b75-a732-d4e138655afe', 'status': 'released'} dm3 X 17171479 17245727 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF160SFV/ 17633423 Kevin White, UChicago 61bc4435d05c5fd0cf4fe9afe4c1de81 https://www.encodeproject.org/files/ENCFF760VEU/@@download/ENCFF760VEU.bigWig released s3://encode-public/2018/02/02/ff03ac8c-5dc7-4279-8c49-d8ceb5ecf12b/ENCFF760VEU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF575PJW fastq fastq reads ENCSR734MCC Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1549561442 Kevin White, UChicago b597169bdd926c4d76b84fcb95813b98 https://www.encodeproject.org/files/ENCFF575PJW/@@download/ENCFF575PJW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/01/d5743ed7-6d02-494b-b0ba-5735e3464bdf/ENCFF575PJW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF338JMY bam bam alignments dm6 ENCSR734MCC Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF575PJW/, /files/ENCFF479RCH/ 2100105676 Kevin White, UChicago c017ae9e544b003c680afd516db50d9c https://www.encodeproject.org/files/ENCFF338JMY/@@download/ENCFF338JMY.bam released s3://encode-public/2018/02/02/a0971a24-919c-4232-b7db-7e6fb0964961/ENCFF338JMY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF203IOT bigWig bigWig signal of unique reads dm6 ENCSR734MCC Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF338JMY/ 17801585 Kevin White, UChicago f4590456852d6861d3a277bf10c9e0c7 https://www.encodeproject.org/files/ENCFF203IOT/@@download/ENCFF203IOT.bigWig released s3://encode-public/2018/02/02/dcbbb58b-e79e-42f6-934b-818af06617ce/ENCFF203IOT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF422GHN bigWig bigWig read-depth normalized signal dm6 ENCSR734MCC Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF338JMY/ 17795161 Kevin White, UChicago a3031eb1202eb6133c6164edb9a11d9c https://www.encodeproject.org/files/ENCFF422GHN/@@download/ENCFF422GHN.bigWig released s3://encode-public/2018/02/02/879a5668-dc40-4e0d-8d93-0f5df7017e15/ENCFF422GHN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001RVN fastq fastq reads ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 50 single-ended 2662686932 Richard Myers, HAIB 21eca7cec0c0e8d4045bd2871913866b SRA:SRR5339406 https://www.encodeproject.org/files/ENCFF001RVN/@@download/ENCFF001RVN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2013/11/01/b14bb676-bbfd-444f-8d31-2f9ffe6b1e40/ENCFF001RVN.fastq.gz ENCFF468ZDX bam bam alignments hg19 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF001RVN/ 1976384824 ENCODE Processing Pipeline 1d500f0f3a8da5618322cc413d27508d https://www.encodeproject.org/files/ENCFF468ZDX/@@download/ENCFF468ZDX.bam released s3://encode-public/2015/10/28/84525042-687b-44b3-b6f1-648644f5e7ae/ENCFF468ZDX.bam ENCODE3 hg19 archived ENCFF302OPH bam bam unfiltered alignments GRCh38 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF001RVN/ 2746920982 ENCODE Processing Pipeline 3e2c57781d87c8dc57fd766861226b37 https://www.encodeproject.org/files/ENCFF302OPH/@@download/ENCFF302OPH.bam released s3://encode-public/2016/05/06/b7debf88-99fd-4c9c-be4e-dc908a4f8e4a/ENCFF302OPH.bam ENCODE3 GRCh38 archived ENCFF204GLJ bam bam alignments GRCh38 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF001RVN/ 1975938924 ENCODE Processing Pipeline 78a88db2e3f0ca61d0021a4ca92b4f65 https://www.encodeproject.org/files/ENCFF204GLJ/@@download/ENCFF204GLJ.bam released s3://encode-public/2016/05/06/b6ae73a3-9699-43d5-a519-59c197f73a9b/ENCFF204GLJ.bam ENCODE3 GRCh38 archived ENCFF783OZL bam bam unfiltered alignments hg19 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF001RVN/ 2741836733 ENCODE Processing Pipeline 59a7c1af1951f5aeb2691c216876bc9e https://www.encodeproject.org/files/ENCFF783OZL/@@download/ENCFF783OZL.bam released s3://encode-public/2016/09/06/715062e0-9444-4ce9-8581-1e3ccf615fd4/ENCFF783OZL.bam ENCODE3 hg19 archived ENCFF657ATV bam bam alignments GRCh38 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF001RVN/ 2099150249 ENCODE Processing Pipeline 25c45e0cddfb24d9d703d0b587594f57 https://www.encodeproject.org/files/ENCFF657ATV/@@download/ENCFF657ATV.bam released s3://encode-public/2020/11/05/72e958dd-8363-4420-930a-6962837b7878/ENCFF657ATV.bam ENCODE4 v1.6.1 GRCh38 released ENCFF804DPT bam bam unfiltered alignments GRCh38 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF001RVN/ 2721869055 ENCODE Processing Pipeline d8f37df92d19fd42f353c54df0e7f8b7 https://www.encodeproject.org/files/ENCFF804DPT/@@download/ENCFF804DPT.bam released s3://encode-public/2020/11/05/4999107d-9e2e-4f09-a727-5f9edd6b58d3/ENCFF804DPT.bam ENCODE4 v1.6.1 GRCh38 released ENCFF806BZZ bam bam unfiltered alignments GRCh38 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 36 /files/ENCFF001RVN/, /files/ENCFF110MCL/ 2211863706 ENCODE Processing Pipeline 8dc6acdf24eabde6de95e050331fb222 https://www.encodeproject.org/files/ENCFF806BZZ/@@download/ENCFF806BZZ.bam released s3://encode-public/2021/01/06/49eaf2e6-e2de-4d17-9298-cca4e62b950c/ENCFF806BZZ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF140GBQ bam bam alignments GRCh38 ENCSR830KKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_2 36 /files/ENCFF001RVN/, /files/ENCFF110MCL/ 1658001077 ENCODE Processing Pipeline a843d75a25579e6d89d397e9f28f1a37 https://www.encodeproject.org/files/ENCFF140GBQ/@@download/ENCFF140GBQ.bam released s3://encode-public/2021/01/06/09b26854-eb4b-4492-8f55-f547712f17f4/ENCFF140GBQ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF955TGM fastq fastq reads ENCSR128QIX Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 136302893 Kevin White, UChicago 80d776b83f40017c46b4e2275eca044e https://www.encodeproject.org/files/ENCFF955TGM/@@download/ENCFF955TGM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF494BOK/ released s3://encode-public/2015/07/30/c5419bba-138f-4c46-89be-2314585e96be/ENCFF955TGM.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF410EUK bam bam alignments ce10 ENCSR128QIX Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF955TGM/ 179553130 Kevin White, UChicago f346bc7b8c4d4b9408a1782813fac943 https://www.encodeproject.org/files/ENCFF410EUK/@@download/ENCFF410EUK.bam released s3://encode-public/2015/08/19/3dd661f2-9680-4f09-829a-6725a1150099/ENCFF410EUK.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF040DAF bigWig bigWig read-depth normalized signal ce10 ENCSR128QIX Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF410EUK/ 10017748 Kevin White, UChicago a9e52b92d164019ff9dd3b40ee53b3a4 https://www.encodeproject.org/files/ENCFF040DAF/@@download/ENCFF040DAF.bigWig released s3://encode-public/2015/10/02/8204a036-b804-4745-9124-bd930f28360a/ENCFF040DAF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF171JIF bigWig bigWig signal of unique reads ce10 ENCSR128QIX Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF410EUK/ 10028032 Kevin White, UChicago 60a919fff733114a8489bbcc88643bba https://www.encodeproject.org/files/ENCFF171JIF/@@download/ENCFF171JIF.bigWig released s3://encode-public/2015/10/02/2d6a7d38-0554-4c51-81ae-2b55db067f9d/ENCFF171JIF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF489MRK bam bam alignments ce11 ENCSR128QIX Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF955TGM/ 179762691 Kevin White, UChicago 6092d387b27589e5880379b04ba1aec1 https://www.encodeproject.org/files/ENCFF489MRK/@@download/ENCFF489MRK.bam released s3://encode-public/2016/01/17/c9e09cbc-5725-40dc-9e43-47da8bcdb5d8/ENCFF489MRK.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF017IWJ bigWig bigWig signal of unique reads ce11 ENCSR128QIX Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF489MRK/ 10027311 Kevin White, UChicago 1e52182892f0a223836e08269ab812ab https://www.encodeproject.org/files/ENCFF017IWJ/@@download/ENCFF017IWJ.bigWig released s3://encode-public/2016/02/03/6709cbde-45a4-47f8-b119-8331e60a6dd6/ENCFF017IWJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF565NUL bigWig bigWig read-depth normalized signal ce11 ENCSR128QIX Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF489MRK/ 10016919 Kevin White, UChicago ccd949bda4ea78fddbe081290b1632ae https://www.encodeproject.org/files/ENCFF565NUL/@@download/ENCFF565NUL.bigWig released s3://encode-public/2016/02/03/cc8e22c8-6f96-4e6f-83ef-82346a604d3d/ENCFF565NUL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF874JOM bam bam unfiltered alignments GRCh38 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF080SRX/, /files/ENCFF110MCL/, /files/ENCFF517IZY/ 3830696439 ENCODE Processing Pipeline 3da5f293a38500b26ca4e01e847d5c50 https://www.encodeproject.org/files/ENCFF874JOM/@@download/ENCFF874JOM.bam released s3://encode-public/2020/09/20/2e3498cb-7ffd-4d24-8fb9-43f80368f230/ENCFF874JOM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF061SSP bam bam alignments GRCh38 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF571PYA/, /files/ENCFF304FNL/, /files/ENCFF349CVB/, /files/ENCFF422KOC/, /files/ENCFF110MCL/ 5409756928 ENCODE Processing Pipeline e5f8b84d01be40e7e006d4133f5883a7 https://www.encodeproject.org/files/ENCFF061SSP/@@download/ENCFF061SSP.bam released s3://encode-public/2020/09/20/86a02251-00e8-44a5-b797-b2c469e14c87/ENCFF061SSP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF517IZY fastq fastq reads ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 2023985284 Bradley Bernstein, Broad 7a42a83188524ffca3ebd76f4852f34a SRA:SRR10388737 https://www.encodeproject.org/files/ENCFF517IZY/@@download/ENCFF517IZY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/b2115100-edbd-4189-8ed3-fccc385ef809/ENCFF517IZY.fastq.gz ENCFF080SRX fastq fastq reads ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 2029995114 Bradley Bernstein, Broad 998c8fa82d7fc39cc941bdabcfd56e1b SRA:SRR10388738 https://www.encodeproject.org/files/ENCFF080SRX/@@download/ENCFF080SRX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/9de63725-be6e-41cf-b118-27b7f86441fb/ENCFF080SRX.fastq.gz ENCFF349CVB fastq fastq reads ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 1107253211 Bradley Bernstein, Broad 7bcf31e81c433d893cd89e8af551f313 SRA:SRR10388739 https://www.encodeproject.org/files/ENCFF349CVB/@@download/ENCFF349CVB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/58078820-0117-4dcf-82bc-27e747e7a466/ENCFF349CVB.fastq.gz ENCFF422KOC fastq fastq reads ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 1133341212 Bradley Bernstein, Broad c99bb1d17f5c7b5be1fa32eaa91199f4 SRA:SRR10388740 https://www.encodeproject.org/files/ENCFF422KOC/@@download/ENCFF422KOC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/3ca73a2d-7361-4b10-ad9a-71717b984e87/ENCFF422KOC.fastq.gz ENCFF729DUX bam bam alignments GRCh38 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF349CVB/, /files/ENCFF643CGH/, /files/ENCFF422KOC/ 1669997707 ENCODE Processing Pipeline bfe3694729131c3f076291b60b4cb995 https://www.encodeproject.org/files/ENCFF729DUX/@@download/ENCFF729DUX.bam archived s3://encode-public/2018/11/27/7c8f0030-439c-4454-8b05-8f06724c5bfd/ENCFF729DUX.bam ENCODE3 GRCh38 archived ENCFF360ZKB bam bam unfiltered alignments GRCh38 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF349CVB/, /files/ENCFF643CGH/, /files/ENCFF422KOC/ 2209027705 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/files/ENCFF643CGH/, /files/ENCFF517IZY/, /files/ENCFF080SRX/ 3172295602 ENCODE Processing Pipeline 9cb2f9aee73ec4f35ae3e2604b1e4c3d https://www.encodeproject.org/files/ENCFF410WPD/@@download/ENCFF410WPD.bam released s3://encode-public/2018/11/27/5e2d4907-0a7c-48a9-aa6a-029159cba4d0/ENCFF410WPD.bam ENCODE3 GRCh38 archived ENCFF341KAB bam bam unfiltered alignments hg19 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF349CVB/, /files/ENCFF807MUK/, /files/ENCFF422KOC/ 2203606388 ENCODE Processing Pipeline 8d35d0c392536fd33e3f3b331b409b58 https://www.encodeproject.org/files/ENCFF341KAB/@@download/ENCFF341KAB.bam archived s3://encode-public/2018/11/27/71837b99-e638-46e6-8cc6-1e0c4d96032c/ENCFF341KAB.bam ENCODE3 hg19 archived ENCFF354SYN bam bam alignments hg19 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue 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ENCFF319HYY bam bam unfiltered alignments hg19 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF422KOC/, /files/ENCFF349CVB/, /files/ENCFF571PYA/, /files/ENCFF304FNL/ 6693014378 ENCODE Processing Pipeline 61f6880f4443656d14a6a332b25208b4 https://www.encodeproject.org/files/ENCFF319HYY/@@download/ENCFF319HYY.bam released s3://encode-public/2019/08/29/651df872-d891-4ec4-b76e-dbc75ccbbbb4/ENCFF319HYY.bam ENCODE3 hg19 archived ENCFF742NXY bam bam alignments GRCh38 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF422KOC/, /files/ENCFF349CVB/, /files/ENCFF643CGH/, /files/ENCFF571PYA/, /files/ENCFF304FNL/ 5373654381 ENCODE Processing Pipeline 06d2ce09f6e54906184d5b5f21efaec9 https://www.encodeproject.org/files/ENCFF742NXY/@@download/ENCFF742NXY.bam released s3://encode-public/2019/08/29/b40b7ea0-1dc0-408a-b903-2e0e5a25b71d/ENCFF742NXY.bam ENCODE3 GRCh38 archived ENCFF926OAW bam bam alignments hg19 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF422KOC/, /files/ENCFF349CVB/, /files/ENCFF571PYA/, /files/ENCFF304FNL/ 5366369040 ENCODE Processing Pipeline 333ce0b8a7345e30f1bb0b87721b49f2 https://www.encodeproject.org/files/ENCFF926OAW/@@download/ENCFF926OAW.bam released s3://encode-public/2019/08/29/dba53ad8-0b00-44f5-8958-d032c3232cfb/ENCFF926OAW.bam ENCODE3 hg19 archived ENCFF571PYA fastq fastq reads ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 2416845389 Bradley Bernstein, Broad e5e38880733881a3d348f862abb0683c SRA:SRR10388741 https://www.encodeproject.org/files/ENCFF571PYA/@@download/ENCFF571PYA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/71c32868-3136-4f42-82e5-0c00de7b4b70/ENCFF571PYA.fastq.gz ENCFF304FNL fastq fastq reads ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 single-ended 2570624715 Bradley Bernstein, Broad 2fc9156b6a590774f12634459397a9e9 SRA:SRR10388742 https://www.encodeproject.org/files/ENCFF304FNL/@@download/ENCFF304FNL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/ed2b5583-bdc8-4f89-b9e4-4d2048c3eed2/ENCFF304FNL.fastq.gz ENCFF786YFO bam bam unfiltered alignments GRCh38 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF571PYA/, /files/ENCFF304FNL/, /files/ENCFF349CVB/, /files/ENCFF422KOC/, /files/ENCFF110MCL/ 6736847265 ENCODE Processing Pipeline dbc451b0e82e11c4e810e53da2a6482c https://www.encodeproject.org/files/ENCFF786YFO/@@download/ENCFF786YFO.bam released s3://encode-public/2020/09/20/e1d9bdf5-4392-4784-b4ae-57922b3f1532/ENCFF786YFO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF020TRP bam bam alignments GRCh38 ENCSR368NLE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF080SRX/, /files/ENCFF110MCL/, /files/ENCFF517IZY/ 3238790779 ENCODE Processing Pipeline 74561de38cb8fb3220ad50aed699bf39 https://www.encodeproject.org/files/ENCFF020TRP/@@download/ENCFF020TRP.bam released s3://encode-public/2020/09/20/6ca63673-3f7b-45e3-b8e4-f984cc584e56/ENCFF020TRP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF001IEP bam bam alignments mm9 ENCSR000AJO Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 36 /files/ENCFF001IEV/ 1426200917 Barbara Wold, Caltech 41b2a554e8048790108b64f2ea645860 https://www.encodeproject.org/files/ENCFF001IEP/@@download/ENCFF001IEP.bam archived s3://encode-public/2011/08/11/f75b9a4d-2d0c-4bd7-8f77-35d61284a3a5/ENCFF001IEP.bam Lab custom mm9 archived low read length ENCFF001IEQ bigWig bigWig signal mm9 ENCSR000AJO Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 /files/ENCFF001IEP/ 159609320 Barbara Wold, Caltech 537dc35f41ca00a3418d7aa68187542e https://www.encodeproject.org/files/ENCFF001IEQ/@@download/ENCFF001IEQ.bigWig archived s3://encode-public/2011/08/11/755618bb-e724-4a9c-b6eb-a121f2f21f0e/ENCFF001IEQ.bigWig Lab custom mm9 archived low read length ENCFF001IEV fastq fastq reads ENCSR000AJO Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 36 single-ended 1161072132 Barbara Wold, Caltech 893887c61424c2e1ec8ecee617fefa33 https://www.encodeproject.org/files/ENCFF001IEV/@@download/ENCFF001IEV.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/8e37acd8-4fc0-41de-a1be-0defb2c4e10c/ENCFF001IEV.fastq.gz low read length ENCFF251BUB bam bam unfiltered alignments mm10-minimal ENCSR000AJO Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 36 /files/ENCFF001IEV/, /files/ENCFF806TVZ/ 1553054264 J. Michael Cherry, Stanford 5b1ffaea89532e85cf19b9a77e60f108 https://www.encodeproject.org/files/ENCFF251BUB/@@download/ENCFF251BUB.bam archived s3://encode-public/2015/02/09/2da2d75b-c418-4eda-8e9f-0f6c3d6074a8/ENCFF251BUB.bam ENCODE3 mm10-minimal archived low read length ENCFF610YTA bam bam unfiltered alignments mm10 ENCSR000AJO Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 36 /files/ENCFF001IEV/, /files/ENCFF018NEO/ 1555180694 ENCODE Processing Pipeline 55265c8ffca538a0a0fa7d6a084c871d https://www.encodeproject.org/files/ENCFF610YTA/@@download/ENCFF610YTA.bam released s3://encode-public/2016/10/26/76dfea59-0482-489c-9118-a8cf4b91958e/ENCFF610YTA.bam ENCODE3 mm10 archived low read length ENCFF940VSO bam bam alignments mm10 ENCSR000AJO Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 36 /files/ENCFF001IEV/, /files/ENCFF018NEO/ 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/human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF010XKC/, /files/ENCFF048DDF/ 3822425024 ENCODE Processing Pipeline fb88526a2bcd94ad0e34f65e29ee808b https://www.encodeproject.org/files/ENCFF832WSG/@@download/ENCFF832WSG.bam released s3://encode-public/2018/11/27/34db3210-7453-4a98-9452-c32b366aa6e9/ENCFF832WSG.bam ENCODE3 hg19 archived ENCFF048AVT bam bam alignments hg19 ENCSR642QDW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF010XKC/, /files/ENCFF048DDF/ 3200623688 ENCODE Processing Pipeline 2433d4550656c1dac7ba54bfe987e16d https://www.encodeproject.org/files/ENCFF048AVT/@@download/ENCFF048AVT.bam released s3://encode-public/2018/11/27/c5d4fcd2-da63-49ae-a8e3-b93deb6cb7e9/ENCFF048AVT.bam ENCODE3 hg19 archived ENCFF514SAI bam bam unfiltered alignments GRCh38 ENCSR642QDW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF048DDF/, /files/ENCFF110MCL/, /files/ENCFF010XKC/ 3872661000 ENCODE Processing Pipeline 16aaaf3769e173855876cdc5f39f1f87 https://www.encodeproject.org/files/ENCFF514SAI/@@download/ENCFF514SAI.bam released s3://encode-public/2020/09/19/a1cd40c1-cbb0-4d94-8691-150a573c4aed/ENCFF514SAI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF705GND bam bam unfiltered alignments GRCh38 ENCSR642QDW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF361CTF/, /files/ENCFF241LMO/ 3126334420 ENCODE Processing Pipeline 3176c6082331bc899a85f6f85eae49cc https://www.encodeproject.org/files/ENCFF705GND/@@download/ENCFF705GND.bam released 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UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 /files/ENCFF957GKV/, /files/ENCFF305NCS/, /files/ENCFF807MUK/, /files/ENCFF347KJF/, /files/ENCFF579MCS/ 3590920455 ENCODE Processing Pipeline 3c546fdac9930eeac923f7749b0b98f9 https://www.encodeproject.org/files/ENCFF725VHA/@@download/ENCFF725VHA.bam released s3://encode-public/2019/02/08/7345d9ca-24f5-407c-bc11-82af8b243640/ENCFF725VHA.bam ENCODE3 hg19 archived ENCFF347KJF fastq fastq reads ENCSR776ZDB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1028276817 Bradley Bernstein, Broad 6a06b8309cb96eaab922c6292d0cd365 SRA:SRR14103726 https://www.encodeproject.org/files/ENCFF347KJF/@@download/ENCFF347KJF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/dbe58c79-240d-42aa-bc54-8917a5e2f1c5/ENCFF347KJF.fastq.gz ENCFF579MCS fastq fastq reads ENCSR776ZDB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1025296925 Bradley Bernstein, Broad 4ad77bd8a868c0a786116bf23d305f08 SRA:SRR14103727 https://www.encodeproject.org/files/ENCFF579MCS/@@download/ENCFF579MCS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/83e92631-8e77-4cb3-a5de-921d73aaff79/ENCFF579MCS.fastq.gz ENCFF305NCS fastq fastq reads ENCSR776ZDB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1289698593 Bradley Bernstein, Broad 218b780afa24242fdc629999bcf8566e SRA:SRR14103728 https://www.encodeproject.org/files/ENCFF305NCS/@@download/ENCFF305NCS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/0e4515dd-04d7-4e5a-9441-fa2f4927ef93/ENCFF305NCS.fastq.gz ENCFF957GKV fastq fastq reads ENCSR776ZDB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1270632703 Bradley Bernstein, Broad 4a515d31cca8a5a47c85fa55683fd69b SRA:SRR14103729 https://www.encodeproject.org/files/ENCFF957GKV/@@download/ENCFF957GKV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/4ea8e7fd-8495-4087-97cd-ba6b175013fa/ENCFF957GKV.fastq.gz ENCFF594YZU bam bam unfiltered alignments GRCh38 ENCSR776ZDB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 /files/ENCFF957GKV/, /files/ENCFF305NCS/, /files/ENCFF110MCL/, /files/ENCFF347KJF/, /files/ENCFF579MCS/ 4327101045 ENCODE Processing Pipeline 1e8b8a52ab27aaffeaf7533f5c735ccc https://www.encodeproject.org/files/ENCFF594YZU/@@download/ENCFF594YZU.bam released s3://encode-public/2020/09/19/db659fa5-813d-4336-bf6e-2ce6dd22a06c/ENCFF594YZU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF159VTV bam bam unfiltered alignments GRCh38 ENCSR776ZDB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 /files/ENCFF824TZP/, /files/ENCFF078EBE/, /files/ENCFF106PAH/, /files/ENCFF543VDP/, /files/ENCFF110MCL/ 2934369647 ENCODE Processing Pipeline ec91df08e6198e2012b136896b79b84e https://www.encodeproject.org/files/ENCFF159VTV/@@download/ENCFF159VTV.bam released s3://encode-public/2020/09/19/e6bc8324-35d7-4356-a95f-11d6c3fa3895/ENCFF159VTV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF143UBS bam bam alignments GRCh38 ENCSR776ZDB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 /files/ENCFF824TZP/, /files/ENCFF078EBE/, /files/ENCFF106PAH/, /files/ENCFF543VDP/, /files/ENCFF110MCL/ 2425764671 ENCODE Processing Pipeline c0e70141d8426e0ecdcd8e6b40e4b483 https://www.encodeproject.org/files/ENCFF143UBS/@@download/ENCFF143UBS.bam released s3://encode-public/2020/09/19/c7ffc535-3836-4cb6-abbb-698b2dad790d/ENCFF143UBS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF678ARU fastq fastq reads ENCSR685FEO Control ChIP-seq /fly-donors/ENCDO243WOR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42993/'], '@type': ['Target', 'Item'], 'name': 'Hr96-dmelanogaster', 'label': 'Hr96', '@id': '/targets/Hr96-dmelanogaster/', 'title': 'Hr96 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b6fc2879-288e-4795-a8ef-696aa5a15d2a', 'status': 'released'} dm3 3R 20841822 20864573 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 451104954 Kevin White, UChicago 8d91e39342f90e05a88233887c8adfc3 https://www.encodeproject.org/files/ENCFF678ARU/@@download/ENCFF678ARU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/722f40f5-adbd-41a9-9f73-f3009c534745/ENCFF678ARU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF353FUD bam bam alignments dm3 ENCSR685FEO Control ChIP-seq /fly-donors/ENCDO243WOR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42993/'], '@type': ['Target', 'Item'], 'name': 'Hr96-dmelanogaster', 'label': 'Hr96', '@id': '/targets/Hr96-dmelanogaster/', 'title': 'Hr96 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b6fc2879-288e-4795-a8ef-696aa5a15d2a', 'status': 'released'} dm3 3R 20841822 20864573 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF678ARU/ 639134576 Kevin White, UChicago 89bd4e0c66b9bffe54e3837bf699fdf3 https://www.encodeproject.org/files/ENCFF353FUD/@@download/ENCFF353FUD.bam released s3://encode-public/2015/08/03/7de0bef0-aed0-46b8-8041-3a5abaea677a/ENCFF353FUD.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF328ZND bigWig bigWig signal of unique reads dm3 ENCSR685FEO Control ChIP-seq /fly-donors/ENCDO243WOR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42993/'], '@type': ['Target', 'Item'], 'name': 'Hr96-dmelanogaster', 'label': 'Hr96', '@id': '/targets/Hr96-dmelanogaster/', 'title': 'Hr96 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b6fc2879-288e-4795-a8ef-696aa5a15d2a', 'status': 'released'} dm3 3R 20841822 20864573 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF353FUD/ 14998470 Kevin White, UChicago 8582a2a78da68588f981c98cfeeebb7b https://www.encodeproject.org/files/ENCFF328ZND/@@download/ENCFF328ZND.bigWig released s3://encode-public/2015/10/06/a58934de-8527-4611-9c10-2d8ceedf712e/ENCFF328ZND.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF003TQQ bigWig bigWig read-depth normalized signal dm3 ENCSR685FEO Control ChIP-seq /fly-donors/ENCDO243WOR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42993/'], '@type': ['Target', 'Item'], 'name': 'Hr96-dmelanogaster', 'label': 'Hr96', '@id': '/targets/Hr96-dmelanogaster/', 'title': 'Hr96 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b6fc2879-288e-4795-a8ef-696aa5a15d2a', 'status': 'released'} dm3 3R 20841822 20864573 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF353FUD/ 14993235 Kevin White, UChicago d432d25d1cf0432ae168db12dfaaeb9a https://www.encodeproject.org/files/ENCFF003TQQ/@@download/ENCFF003TQQ.bigWig released s3://encode-public/2015/10/06/ce42a10a-bf47-464a-b2c0-db500a526e2c/ENCFF003TQQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF335NUI bam bam alignments dm6 ENCSR685FEO Control ChIP-seq /fly-donors/ENCDO243WOR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42993/'], '@type': ['Target', 'Item'], 'name': 'Hr96-dmelanogaster', 'label': 'Hr96', '@id': '/targets/Hr96-dmelanogaster/', 'title': 'Hr96 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b6fc2879-288e-4795-a8ef-696aa5a15d2a', 'status': 'released'} dm3 3R 20841822 20864573 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF678ARU/ 633210127 Kevin White, UChicago 727ce39e71be96a065f36a0994bdb973 https://www.encodeproject.org/files/ENCFF335NUI/@@download/ENCFF335NUI.bam released s3://encode-public/2016/04/21/3d9a758c-6054-4bd6-a48e-4177cd03fc5e/ENCFF335NUI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF509VRA bigWig bigWig read-depth normalized signal dm6 ENCSR685FEO Control ChIP-seq /fly-donors/ENCDO243WOR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42993/'], '@type': ['Target', 'Item'], 'name': 'Hr96-dmelanogaster', 'label': 'Hr96', '@id': '/targets/Hr96-dmelanogaster/', 'title': 'Hr96 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b6fc2879-288e-4795-a8ef-696aa5a15d2a', 'status': 'released'} dm3 3R 20841822 20864573 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF335NUI/ 16999815 Kevin White, UChicago 97163be3aad9a7ba66663114e929c11c https://www.encodeproject.org/files/ENCFF125ONB/@@download/ENCFF125ONB.bigWig released s3://encode-public/2016/06/20/0184dec2-2672-4b35-9d05-2c0ac49dd727/ENCFF125ONB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF132VQS fastq fastq reads ENCSR002ABL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF249XJO/ 2700260280 Michael Snyder, Stanford d77cccd5e0942b75f4cf4baa04a2f4a3 SRA:SRR14102931 https://www.encodeproject.org/files/ENCFF132VQS/@@download/ENCFF132VQS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/aff7e7f1-d408-4c0c-8fe9-f767d40314a2/ENCFF132VQS.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF249XJO fastq fastq reads ENCSR002ABL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF132VQS/ 2399123516 Michael Snyder, Stanford 7c3be3c14c09348866ccef03acbfa976 SRA:SRR14102931 https://www.encodeproject.org/files/ENCFF249XJO/@@download/ENCFF249XJO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/40b16197-d8b4-4a99-a99f-1c70f374ec9b/ENCFF249XJO.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF051BEQ bam bam unfiltered alignments GRCh38 ENCSR002ABL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 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EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF249XJO/, /files/ENCFF132VQS/ 3403781605 ENCODE Processing Pipeline c9a934c25544ab6a0592d6c34ef9d171 https://www.encodeproject.org/files/ENCFF793FNN/@@download/ENCFF793FNN.bam released s3://encode-public/2020/04/20/d54ea3a9-8cc1-493a-908a-a032bca07de3/ENCFF793FNN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF042JQQ tagAlign tagAlign alignments hg19 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF719PNH/, /files/ENCFF913WQY/, /files/ENCFF505RHM/, /files/ENCFF101IHA/ 155437887 Anshul Kundaje, Stanford 0846c321608dd974f36d77161604048d https://www.encodeproject.org/files/ENCFF042JQQ/@@download/ENCFF042JQQ.tagAlign.gz archived s3://encode-public/2016/03/30/8b096f27-159f-436f-9a57-6b77c96159ad/ENCFF042JQQ.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF101IHA fastq fastq reads ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 447360269 Zhiping Weng, UMass 39d8edfc2d47016146939ce1cda01796 SRA:SRR1067215 https://www.encodeproject.org/files/ENCFF101IHA/@@download/ENCFF101IHA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/5c14ff6f-9e99-4252-9ce8-803784b5c051/ENCFF101IHA.fastq.gz mild to moderate bottlenecking, low read length ENCFF505RHM fastq fastq reads ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 972908405 Zhiping Weng, UMass 576c4b1ed7b458d2cad3a2cbed332acd SRA:SRR1067412 https://www.encodeproject.org/files/ENCFF505RHM/@@download/ENCFF505RHM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/161c0980-16f0-40d5-8db0-2a0364a3dec9/ENCFF505RHM.fastq.gz mild to moderate bottlenecking, low read length ENCFF913WQY fastq fastq reads ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 378521858 Zhiping Weng, UMass 7f2a1cedcba7a8b1f1ca8b8c7f9c4e06 SRA:SRR1067326 https://www.encodeproject.org/files/ENCFF913WQY/@@download/ENCFF913WQY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/d4704490-ff48-48b0-9f90-a23b01106241/ENCFF913WQY.fastq.gz mild to moderate bottlenecking, low read length ENCFF719PNH fastq fastq reads ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 461613997 Zhiping Weng, UMass b6e374b73f3eba96a1805580c487f0b9 SRA:SRR1067314 https://www.encodeproject.org/files/ENCFF719PNH/@@download/ENCFF719PNH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/e2166fef-5d15-4481-b4cd-2f7af19823d0/ENCFF719PNH.fastq.gz mild to moderate bottlenecking, low read length ENCFF332UFU bam bam unfiltered alignments GRCh38 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF505RHM/, /files/ENCFF643CGH/, /files/ENCFF913WQY/, /files/ENCFF719PNH/, /files/ENCFF101IHA/ 2633476603 ENCODE Processing Pipeline 595c4e791f227e02b81de0e9822e1667 https://www.encodeproject.org/files/ENCFF332UFU/@@download/ENCFF332UFU.bam released s3://encode-public/2016/12/19/774dbbfc-1d8f-46c5-ba7a-626c3c091b49/ENCFF332UFU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF434QYO bam bam unfiltered alignments hg19 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF505RHM/, /files/ENCFF807MUK/, /files/ENCFF913WQY/, /files/ENCFF719PNH/, /files/ENCFF101IHA/ 2612047992 ENCODE Processing Pipeline d2f5b14dc9cc798b27dac92f7a276a70 https://www.encodeproject.org/files/ENCFF434QYO/@@download/ENCFF434QYO.bam released s3://encode-public/2016/12/19/b1fa538d-8fba-429a-b8a4-904a5fd48a3f/ENCFF434QYO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF239KPF bam bam alignments GRCh38 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF505RHM/, /files/ENCFF643CGH/, /files/ENCFF913WQY/, /files/ENCFF719PNH/, /files/ENCFF101IHA/ 1780249248 ENCODE Processing Pipeline 92e9fb21440ac7df5452d4f82447c073 https://www.encodeproject.org/files/ENCFF239KPF/@@download/ENCFF239KPF.bam released s3://encode-public/2016/12/19/af8bfb4a-22e5-49dc-a633-cb6269849fd0/ENCFF239KPF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF508FTG bam bam alignments hg19 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF505RHM/, /files/ENCFF807MUK/, /files/ENCFF913WQY/, /files/ENCFF719PNH/, /files/ENCFF101IHA/ 1780692612 ENCODE Processing Pipeline 65467e5fa6b7f9215947d94417f24b32 https://www.encodeproject.org/files/ENCFF508FTG/@@download/ENCFF508FTG.bam released s3://encode-public/2016/12/19/fd570fd6-c365-45c1-9219-83ac05e37b84/ENCFF508FTG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF494CZZ tagAlign tagAlign alignments hg19 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF974ONB/, /files/ENCFF405FJY/ 219390147 Anshul Kundaje, Stanford b4357b260d13c5c82a214b4a169134e6 https://www.encodeproject.org/files/ENCFF494CZZ/@@download/ENCFF494CZZ.tagAlign.gz archived s3://encode-public/2016/03/30/e4e4bd49-099b-48d2-9b99-35076fdfb985/ENCFF494CZZ.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF481HRN bam bam redacted alignments hg19 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF405FJY/, /files/ENCFF807MUK/, /files/ENCFF974ONB/ 453195494 ENCODE Processing Pipeline 8eda1806e31e76ac9205c4f96a6720db https://www.encodeproject.org/files/ENCFF481HRN/@@download/ENCFF481HRN.bam released s3://encode-public/2018/01/19/47e21c89-32e9-41dd-acc2-fa59ee9d325d/ENCFF481HRN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF805KCF bam bam redacted unfiltered alignments hg19 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF405FJY/, /files/ENCFF807MUK/, /files/ENCFF974ONB/ 632752456 ENCODE Processing Pipeline 5259048c08e19566f3d5e17b407b579c https://www.encodeproject.org/files/ENCFF805KCF/@@download/ENCFF805KCF.bam released s3://encode-public/2018/01/19/5c2a3078-1cd2-40ec-bb0d-01d0e8d8c4b8/ENCFF805KCF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF676SQW bam bam redacted unfiltered alignments GRCh38 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF405FJY/, /files/ENCFF643CGH/, /files/ENCFF974ONB/ 638875657 ENCODE Processing Pipeline 852a9480015afbb523d9fabb094ee4a4 https://www.encodeproject.org/files/ENCFF676SQW/@@download/ENCFF676SQW.bam released s3://encode-public/2018/01/19/c391e086-3046-4aaf-9d67-4923d2f63d7a/ENCFF676SQW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF585LYF bam bam redacted alignments GRCh38 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF405FJY/, /files/ENCFF643CGH/, /files/ENCFF974ONB/ 453157064 ENCODE Processing Pipeline 89320a646ce9ef89deafd2a657ec7aac https://www.encodeproject.org/files/ENCFF585LYF/@@download/ENCFF585LYF.bam released s3://encode-public/2018/01/19/f57e6c5c-1e2f-47c6-9982-af42354ace86/ENCFF585LYF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF131OLM bam bam redacted alignments GRCh38 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF974ONB/, /files/ENCFF405FJY/ 1462103919 ENCODE Processing Pipeline e91e499efda6129cb7a095d18312dd30 https://www.encodeproject.org/files/ENCFF131OLM/@@download/ENCFF131OLM.bam released s3://encode-public/2021/01/27/088d0080-ae23-4d14-a192-a546da2dd0cf/ENCFF131OLM.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length ENCFF075KJA bam bam redacted alignments GRCh38 ENCSR563SVE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000905 effector memory CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF913WQY/, /files/ENCFF505RHM/, /files/ENCFF110MCL/, /files/ENCFF101IHA/, /files/ENCFF719PNH/ 1937993983 ENCODE Processing Pipeline eac5e8e757abda15b71fcce49e8306cc https://www.encodeproject.org/files/ENCFF075KJA/@@download/ENCFF075KJA.bam released s3://encode-public/2021/01/27/d84a7caf-752c-4c26-9180-5b68b16cbebb/ENCFF075KJA.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length ENCFF116NJA fastq fastq reads ENCSR793USS Control ChIP-seq /worm-donors/ENCDO820MWR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180722/'], '@type': ['Target', 'Item'], 'name': 'spr-3-celegans', 'label': 'spr-3', '@id': '/targets/spr-3-celegans/', 'title': 'spr-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '03da56a9-81fc-40e3-bff4-4d310335f385', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 811288849 Kevin White, UChicago d9f6b10ab8d0f6c5f32cdf52dde34bc6 https://www.encodeproject.org/files/ENCFF116NJA/@@download/ENCFF116NJA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/cd1539ba-4c2e-4414-9405-4ba917915a3f/ENCFF116NJA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF677HQA bam bam alignments ce11 ENCSR793USS Control ChIP-seq /worm-donors/ENCDO820MWR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180722/'], '@type': ['Target', 'Item'], 'name': 'spr-3-celegans', 'label': 'spr-3', '@id': '/targets/spr-3-celegans/', 'title': 'spr-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '03da56a9-81fc-40e3-bff4-4d310335f385', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF116NJA/, /files/ENCFF586MOL/ 1056909873 Kevin White, UChicago 80d7aa1f794e2246ca10e2ab3bad3d55 https://www.encodeproject.org/files/ENCFF677HQA/@@download/ENCFF677HQA.bam released s3://encode-public/2018/02/28/2394d632-fcbe-4528-9492-16a37336c798/ENCFF677HQA.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF242KXX bigWig bigWig read-depth normalized signal ce11 ENCSR793USS Control ChIP-seq /worm-donors/ENCDO820MWR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180722/'], '@type': ['Target', 'Item'], 'name': 'spr-3-celegans', 'label': 'spr-3', '@id': '/targets/spr-3-celegans/', 'title': 'spr-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '03da56a9-81fc-40e3-bff4-4d310335f385', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF677HQA/ 9988879 Kevin White, UChicago c987c75fd69231cfefc345fc57f44a26 https://www.encodeproject.org/files/ENCFF242KXX/@@download/ENCFF242KXX.bigWig released s3://encode-public/2018/03/01/53fcd4cc-649e-48da-844a-44e64369a2c4/ENCFF242KXX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF398MGE bigWig bigWig signal of unique reads ce11 ENCSR793USS Control ChIP-seq /worm-donors/ENCDO820MWR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180722/'], '@type': ['Target', 'Item'], 'name': 'spr-3-celegans', 'label': 'spr-3', '@id': '/targets/spr-3-celegans/', 'title': 'spr-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '03da56a9-81fc-40e3-bff4-4d310335f385', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF677HQA/ 9965248 Kevin White, UChicago 6c0b79956f3550e413ab5b6602ff42ce https://www.encodeproject.org/files/ENCFF398MGE/@@download/ENCFF398MGE.bigWig released s3://encode-public/2018/03/01/e10484a3-a069-4c8e-86c6-070ffc5594af/ENCFF398MGE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF347EIS bam bam unfiltered alignments hg19 ENCSR713ONE Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_2 50 /files/ENCFF225JIA/, /files/ENCFF807MUK/ 2124018925 ENCODE Processing Pipeline 20a21ba569ac243f7ae6e40b1e1c63e6 https://www.encodeproject.org/files/ENCFF347EIS/@@download/ENCFF347EIS.bam released s3://encode-public/2018/02/22/1ccd0e3e-be17-4b19-b917-72d3e2968852/ENCFF347EIS.bam ENCODE3 hg19 archived ENCFF225JIA fastq fastq reads ENCSR713ONE Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_2 50 single-ended 2017194020 Richard Myers, HAIB 42bad3b29a675d76670241da120217d4 SRA:SRR5339200 https://www.encodeproject.org/files/ENCFF225JIA/@@download/ENCFF225JIA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/3d269448-ae6a-4fb2-8445-9175b53b1c95/ENCFF225JIA.fastq.gz ENCFF927EKA bam bam alignments hg19 ENCSR713ONE Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_2 50 /files/ENCFF225JIA/, /files/ENCFF807MUK/ 1417790269 ENCODE Processing Pipeline 545ac8f63358f33d948ffd2d69b2ded2 https://www.encodeproject.org/files/ENCFF927EKA/@@download/ENCFF927EKA.bam released s3://encode-public/2015/11/17/7dc624c2-5fa9-4274-a05f-5b959b50240d/ENCFF927EKA.bam ENCODE3 hg19 archived ENCFF657NYM bam bam unfiltered alignments GRCh38 ENCSR713ONE Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_2 50 /files/ENCFF225JIA/, /files/ENCFF643CGH/ 2125247403 ENCODE Processing Pipeline 4b5dee2580a54b700eaea26114d4b8ff https://www.encodeproject.org/files/ENCFF657NYM/@@download/ENCFF657NYM.bam released s3://encode-public/2016/05/06/377de53b-4c1a-4db7-b90d-805e81598759/ENCFF657NYM.bam ENCODE3 GRCh38 archived ENCFF183AOM bam bam alignments GRCh38 ENCSR713ONE Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_2 50 /files/ENCFF225JIA/, /files/ENCFF643CGH/ 1424843942 ENCODE Processing Pipeline 648cbd40dffeb1abae04b1b10f1889e7 https://www.encodeproject.org/files/ENCFF183AOM/@@download/ENCFF183AOM.bam released s3://encode-public/2016/05/06/51e7d3a6-5202-4562-a5dd-05191405f75a/ENCFF183AOM.bam ENCODE3 GRCh38 archived ENCFF386YDY bam bam unfiltered alignments GRCh38 ENCSR713ONE Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF225JIA/ 2124777163 ENCODE Processing Pipeline f2de87c5401227244fdd6926e0121ecb https://www.encodeproject.org/files/ENCFF386YDY/@@download/ENCFF386YDY.bam released s3://encode-public/2020/06/24/9cd2c5ca-aa76-4620-828b-e32b5a4e1af3/ENCFF386YDY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF264GVN bam bam alignments GRCh38 ENCSR713ONE Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF225JIA/ 1492453058 ENCODE Processing Pipeline 1d74f593949238faecee83a79431b8d8 https://www.encodeproject.org/files/ENCFF264GVN/@@download/ENCFF264GVN.bam released s3://encode-public/2020/06/24/34ab470e-99e7-4820-bd85-3a86aca3a88b/ENCFF264GVN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF272NQX fastq fastq reads ENCSR638MNR Control ChIP-seq /fly-donors/ENCDO484QBM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38471/'], '@type': ['Target', 'Item'], 'name': 'fd64A-dmelanogaster', 'label': 'fd64A', '@id': '/targets/fd64A-dmelanogaster/', 'title': 'fd64A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c03c51e4-9930-437f-aedd-fbcfab8213a2', 'status': 'released'} dm3 3L 4003884 4029353 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1335287657 Kevin White, UChicago ee816b3e8799a4c77d20cd84abf59ac1 https://www.encodeproject.org/files/ENCFF272NQX/@@download/ENCFF272NQX.fastq.gz Illumina HiSeq 4000 /files/ENCFF279YSJ/ released s3://encode-public/2018/02/01/a9bd80f5-95c6-4b0b-978d-68f773ef8664/ENCFF272NQX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF402HWE bam bam alignments dm6 ENCSR638MNR Control ChIP-seq /fly-donors/ENCDO484QBM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38471/'], '@type': ['Target', 'Item'], 'name': 'fd64A-dmelanogaster', 'label': 'fd64A', '@id': '/targets/fd64A-dmelanogaster/', 'title': 'fd64A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c03c51e4-9930-437f-aedd-fbcfab8213a2', 'status': 'released'} dm3 3L 4003884 4029353 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF272NQX/, /files/ENCFF479RCH/ 1786031296 Kevin White, UChicago d26e869b99207aa1617274687ce28c46 https://www.encodeproject.org/files/ENCFF402HWE/@@download/ENCFF402HWE.bam released s3://encode-public/2018/02/02/5ee38ceb-9978-4498-9452-3e475d871cb8/ENCFF402HWE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF780EBG bigWig bigWig read-depth normalized signal dm6 ENCSR638MNR Control ChIP-seq /fly-donors/ENCDO484QBM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38471/'], '@type': ['Target', 'Item'], 'name': 'fd64A-dmelanogaster', 'label': 'fd64A', '@id': '/targets/fd64A-dmelanogaster/', 'title': 'fd64A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c03c51e4-9930-437f-aedd-fbcfab8213a2', 'status': 'released'} dm3 3L 4003884 4029353 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF402HWE/ 17653824 Kevin White, UChicago 656bff466d4315b423f8866dba152732 https://www.encodeproject.org/files/ENCFF780EBG/@@download/ENCFF780EBG.bigWig released s3://encode-public/2018/02/02/89a1da1c-276a-4616-8841-67c64d4f01fd/ENCFF780EBG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF813OTJ bigWig bigWig signal of unique reads dm6 ENCSR638MNR Control ChIP-seq /fly-donors/ENCDO484QBM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38471/'], '@type': ['Target', 'Item'], 'name': 'fd64A-dmelanogaster', 'label': 'fd64A', '@id': '/targets/fd64A-dmelanogaster/', 'title': 'fd64A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c03c51e4-9930-437f-aedd-fbcfab8213a2', 'status': 'released'} dm3 3L 4003884 4029353 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF402HWE/ 17726593 Kevin White, UChicago 52b7689f37883a40cec273fc9606a67b https://www.encodeproject.org/files/ENCFF813OTJ/@@download/ENCFF813OTJ.bigWig released s3://encode-public/2018/02/02/63fa5729-8a6b-48d2-8ec4-a8defa62eec3/ENCFF813OTJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF479ROH fastq fastq reads ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 93150021 Michael Snyder, Stanford f35f755d1519a79c047665d9388f2201 https://www.encodeproject.org/files/ENCFF479ROH/@@download/ENCFF479ROH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4c4881de-3b30-4863-aa71-45d012bcc455/ENCFF479ROH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF251DEA fastq fastq reads ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 81010344 Michael Snyder, Stanford 09707ddced53ddc012d7990ab5218758 https://www.encodeproject.org/files/ENCFF251DEA/@@download/ENCFF251DEA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/545239db-4207-4232-9689-32b2982da5c8/ENCFF251DEA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF456MHK bam bam alignments ce10 ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF479ROH/, /files/ENCFF251DEA/, /files/ENCFF987UMF/ 201583559 Kevin White, UChicago 40684a8b4112b703f6a11cecf503957d https://www.encodeproject.org/files/ENCFF456MHK/@@download/ENCFF456MHK.bam released s3://encode-public/2016/10/18/47f6c5b9-c243-4dbe-b831-3e455d36ead6/ENCFF456MHK.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF003YAE bam bam alignments ce11 ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF479ROH/, /files/ENCFF251DEA/, /files/ENCFF586MOL/ 201756067 Kevin White, UChicago 475d15710db80044faa9724bb3c5095b https://www.encodeproject.org/files/ENCFF003YAE/@@download/ENCFF003YAE.bam released s3://encode-public/2016/10/19/3e0e07ec-bee5-462b-9ee8-07b30f10e5d2/ENCFF003YAE.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF026APQ bigWig bigWig read-depth normalized signal ce10 ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF456MHK/ 10060294 Kevin White, UChicago a1da3d40fbb056e27ff847a1fc11a080 https://www.encodeproject.org/files/ENCFF026APQ/@@download/ENCFF026APQ.bigWig released s3://encode-public/2016/10/20/8f2e2841-b9ca-4523-a834-1660b63c31be/ENCFF026APQ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF491ANV bigWig bigWig signal of unique reads ce10 ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF456MHK/ 10021509 Kevin White, UChicago b46185acb4284f02606b526309168609 https://www.encodeproject.org/files/ENCFF491ANV/@@download/ENCFF491ANV.bigWig released s3://encode-public/2016/10/20/e61861ef-1149-497e-ad73-c599fcd4e9a1/ENCFF491ANV.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF834WVJ bigWig bigWig signal of unique reads ce11 ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF003YAE/ 10014364 Kevin White, UChicago eccfc580a3f248dd0bfc1569ffa7f507 https://www.encodeproject.org/files/ENCFF834WVJ/@@download/ENCFF834WVJ.bigWig released s3://encode-public/2016/10/21/41088a20-bc50-49ab-8e2f-5d1c49df31e8/ENCFF834WVJ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF298CNG bigWig bigWig read-depth normalized signal ce11 ENCSR165EZK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF003YAE/ 10056578 Kevin White, UChicago d21db8373a325b77af9bd9893edea1a5 https://www.encodeproject.org/files/ENCFF298CNG/@@download/ENCFF298CNG.bigWig released s3://encode-public/2016/10/21/afb138e8-c202-4b2f-8c5e-3bf4a5df0fa1/ENCFF298CNG.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF483ZSX bam bam unfiltered alignments hg19 ENCSR904IXG Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF158AFC/ 1729107893 ENCODE Processing Pipeline 0276368a46c23483df6e93c09f77ff28 https://www.encodeproject.org/files/ENCFF483ZSX/@@download/ENCFF483ZSX.bam released s3://encode-public/2018/02/21/4bba4876-ca0c-41a1-8572-c3aa6f006365/ENCFF483ZSX.bam ENCODE3 hg19 archived ENCFF158AFC fastq fastq reads ENCSR904IXG Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1541184972 Richard Myers, HAIB 0a6144a2a41cf03fe1635511f2e1ea57 SRA:SRR5339524 https://www.encodeproject.org/files/ENCFF158AFC/@@download/ENCFF158AFC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/a870bef5-36a0-4ffa-b4ca-3b6cdd351fab/ENCFF158AFC.fastq.gz ENCFF359TIO bam bam alignments hg19 ENCSR904IXG Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF158AFC/ 1282105169 ENCODE Processing Pipeline ab55ff89c481117cf2a256f221739212 https://www.encodeproject.org/files/ENCFF359TIO/@@download/ENCFF359TIO.bam released s3://encode-public/2016/01/15/b8113e9c-6688-4573-aec5-ba409f6ed3a4/ENCFF359TIO.bam ENCODE3 hg19 archived ENCFF350FIM bam bam unfiltered alignments GRCh38 ENCSR904IXG Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF158AFC/ 1737157579 ENCODE Processing Pipeline d1d7569c2ba5eaeeed6d31cc4673c095 https://www.encodeproject.org/files/ENCFF350FIM/@@download/ENCFF350FIM.bam released s3://encode-public/2016/05/06/75b14534-0d82-43dc-838d-e64d03b4459e/ENCFF350FIM.bam ENCODE3 GRCh38 archived ENCFF985NSN bam bam alignments GRCh38 ENCSR904IXG Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF158AFC/ 1282462844 ENCODE Processing Pipeline 15bb4141b23ba446ae141530ca6e9ae3 https://www.encodeproject.org/files/ENCFF985NSN/@@download/ENCFF985NSN.bam released s3://encode-public/2016/05/06/40d77a2a-507b-4bf3-a352-9554cd35ef5b/ENCFF985NSN.bam ENCODE3 GRCh38 archived ENCFF914YCV bam bam unfiltered alignments GRCh38 ENCSR904IXG Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF158AFC/ 1736925999 ENCODE Processing Pipeline d5cbbda644f9e1c2271723f7f5c83b96 https://www.encodeproject.org/files/ENCFF914YCV/@@download/ENCFF914YCV.bam released s3://encode-public/2020/06/06/d36516cc-2827-4213-9274-cc2c0f54df95/ENCFF914YCV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF862RGS bam bam alignments GRCh38 ENCSR904IXG Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF158AFC/ 1348401177 ENCODE Processing Pipeline 9ec368aeb5e841f8727152963fc4b548 https://www.encodeproject.org/files/ENCFF862RGS/@@download/ENCFF862RGS.bam released s3://encode-public/2020/06/06/f058dd4f-b218-4050-b0c9-7a42798011a7/ENCFF862RGS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF298QLL fastq fastq reads ENCSR309MYO Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF351TQQ/ 4881397308 Michael Snyder, Stanford abeb55c34d80f88c73b063db9de55644 SRA:SRR13803808 https://www.encodeproject.org/files/ENCFF298QLL/@@download/ENCFF298QLL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/6cb5dc79-3bac-483d-bd60-2c0b3c673641/ENCFF298QLL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF351TQQ fastq fastq reads ENCSR309MYO Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF298QLL/ 5254023850 Michael Snyder, Stanford 79f07f2b017e513b60318303bd7d128d SRA:SRR13803808 https://www.encodeproject.org/files/ENCFF351TQQ/@@download/ENCFF351TQQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/6c19a03d-b700-4024-b511-2195de8cc9be/ENCFF351TQQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF204JME bam bam unfiltered alignments GRCh38 ENCSR309MYO Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF298QLL/, /files/ENCFF351TQQ/ 8922382863 ENCODE Processing Pipeline e01b406b1d0a12b944b73cc3201fac81 https://www.encodeproject.org/files/ENCFF204JME/@@download/ENCFF204JME.bam released s3://encode-public/2020/08/20/622593c6-b329-4057-8e80-cc8b934d018b/ENCFF204JME.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF733OEO bam bam alignments GRCh38 ENCSR309MYO Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF298QLL/, /files/ENCFF351TQQ/ 5580337821 ENCODE Processing Pipeline de1da112ed3269a476260647cf7f7892 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/files/ENCFF448KGM/, /files/ENCFF480CLN/, /files/ENCFF583ICZ/, /files/ENCFF643CGH/, /files/ENCFF535UZA/ 3857345116 ENCODE Processing Pipeline 2ecb6c49f9541b4d9008c28df1374cfe https://www.encodeproject.org/files/ENCFF579VWV/@@download/ENCFF579VWV.bam released s3://encode-public/2019/06/12/421ed2ca-2a9c-45a2-b0cc-641c68da0689/ENCFF579VWV.bam ENCODE3 GRCh38 archived ENCFF763ECA bam bam unfiltered alignments hg19 ENCSR343GIV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF448KGM/, /files/ENCFF480CLN/, /files/ENCFF583ICZ/, /files/ENCFF807MUK/, /files/ENCFF535UZA/ 4692302338 ENCODE Processing Pipeline 1558f6cd8e9df6999e46205510ae5e2f https://www.encodeproject.org/files/ENCFF763ECA/@@download/ENCFF763ECA.bam released s3://encode-public/2019/06/12/e9545005-9951-4b54-aa85-018b10c8504f/ENCFF763ECA.bam ENCODE3 hg19 archived ENCFF793SOD bam bam alignments hg19 ENCSR343GIV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF448KGM/, /files/ENCFF480CLN/, /files/ENCFF583ICZ/, /files/ENCFF807MUK/, /files/ENCFF535UZA/ 3851865978 ENCODE Processing Pipeline 65b83c9fb5487a2478050feec28053b0 https://www.encodeproject.org/files/ENCFF793SOD/@@download/ENCFF793SOD.bam released s3://encode-public/2019/06/12/fd8d1d9d-9029-43f8-824c-f81eb1195d4c/ENCFF793SOD.bam ENCODE3 hg19 archived ENCFF504ATL bam bam unfiltered alignments GRCh38 ENCSR343GIV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF448KGM/, /files/ENCFF583ICZ/, /files/ENCFF480CLN/, /files/ENCFF535UZA/, /files/ENCFF110MCL/ 4675172584 ENCODE Processing Pipeline 2c7907ca812133a601bf87a16f5af174 https://www.encodeproject.org/files/ENCFF504ATL/@@download/ENCFF504ATL.bam released s3://encode-public/2020/09/20/99b1c52d-f618-4412-a679-1cf53f9b6adc/ENCFF504ATL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF188HDA bam bam alignments GRCh38 ENCSR343GIV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF448KGM/, /files/ENCFF583ICZ/, /files/ENCFF480CLN/, /files/ENCFF535UZA/, /files/ENCFF110MCL/ 3857298780 ENCODE Processing Pipeline e4f5d25e082dc2a2a689772190acdbf4 https://www.encodeproject.org/files/ENCFF188HDA/@@download/ENCFF188HDA.bam released s3://encode-public/2020/09/20/962ff6bf-47b8-4ad7-94bd-eb36e7db8634/ENCFF188HDA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF824MTK fastq fastq reads ENCSR920JDE Control ChIP-seq /fly-donors/ENCDO680UDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39682/'], '@type': ['Target', 'Item'], 'name': 'CrebA-dmelanogaster', 'label': 'CrebA', '@id': '/targets/CrebA-dmelanogaster/', 'title': 'CrebA (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a1656deb-2484-4416-83c6-0f059d6db163', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1756570869 Kevin White, UChicago da9b6672552c214d8a51b6fe0f3a377a https://www.encodeproject.org/files/ENCFF824MTK/@@download/ENCFF824MTK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/26e86d5a-856c-414a-adcd-3e9ebb3faf1a/ENCFF824MTK.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF583KHT bam bam alignments dm3 ENCSR920JDE Control ChIP-seq /fly-donors/ENCDO680UDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39682/'], '@type': ['Target', 'Item'], 'name': 'CrebA-dmelanogaster', 'label': 'CrebA', '@id': '/targets/CrebA-dmelanogaster/', 'title': 'CrebA (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a1656deb-2484-4416-83c6-0f059d6db163', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF824MTK/ 2379611976 Kevin White, UChicago 9756d35488794544b3b37108f95a3ce6 https://www.encodeproject.org/files/ENCFF583KHT/@@download/ENCFF583KHT.bam released s3://encode-public/2015/08/03/33c10a55-0810-4bc2-abcb-a063a027fb01/ENCFF583KHT.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF416CYN bigWig bigWig read-depth normalized signal dm3 ENCSR920JDE Control ChIP-seq /fly-donors/ENCDO680UDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39682/'], '@type': ['Target', 'Item'], 'name': 'CrebA-dmelanogaster', 'label': 'CrebA', '@id': '/targets/CrebA-dmelanogaster/', 'title': 'CrebA (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a1656deb-2484-4416-83c6-0f059d6db163', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF583KHT/ 15344959 Kevin White, UChicago 9b7198707fd7e629ddbc9b149fbd178a https://www.encodeproject.org/files/ENCFF416CYN/@@download/ENCFF416CYN.bigWig released s3://encode-public/2015/10/06/01c7b7d0-313a-46a6-b793-0a3ec652a7f8/ENCFF416CYN.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF664CIK bigWig bigWig signal of unique reads dm3 ENCSR920JDE Control ChIP-seq /fly-donors/ENCDO680UDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39682/'], '@type': ['Target', 'Item'], 'name': 'CrebA-dmelanogaster', 'label': 'CrebA', '@id': '/targets/CrebA-dmelanogaster/', 'title': 'CrebA (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a1656deb-2484-4416-83c6-0f059d6db163', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF583KHT/ 15343486 Kevin White, UChicago 821ca226a2eaea2ba525130c08f3f7a6 https://www.encodeproject.org/files/ENCFF664CIK/@@download/ENCFF664CIK.bigWig released s3://encode-public/2015/10/06/fb974af1-c90b-4e60-9d16-547a8432daf4/ENCFF664CIK.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF160CIA bam bam alignments dm6 ENCSR920JDE Control ChIP-seq /fly-donors/ENCDO680UDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39682/'], '@type': ['Target', 'Item'], 'name': 'CrebA-dmelanogaster', 'label': 'CrebA', '@id': '/targets/CrebA-dmelanogaster/', 'title': 'CrebA (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a1656deb-2484-4416-83c6-0f059d6db163', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF824MTK/ 2350984006 Kevin White, UChicago c4128fc369bea566001e7cf9738ffddb https://www.encodeproject.org/files/ENCFF160CIA/@@download/ENCFF160CIA.bam released s3://encode-public/2016/04/21/b40fd305-ae4c-4d4c-ba03-eb796f3bd5b2/ENCFF160CIA.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF402UWJ bigWig bigWig read-depth normalized signal dm6 ENCSR920JDE Control ChIP-seq /fly-donors/ENCDO680UDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39682/'], '@type': ['Target', 'Item'], 'name': 'CrebA-dmelanogaster', 'label': 'CrebA', '@id': '/targets/CrebA-dmelanogaster/', 'title': 'CrebA (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a1656deb-2484-4416-83c6-0f059d6db163', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF160CIA/ 17426007 Kevin White, UChicago b140e4dcc2d7d5dd3608c98e2a3bb247 https://www.encodeproject.org/files/ENCFF402UWJ/@@download/ENCFF402UWJ.bigWig released s3://encode-public/2016/06/20/8b3f1067-155b-4f8e-9f86-0c558333a900/ENCFF402UWJ.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF434XEX bigWig bigWig signal of unique reads dm6 ENCSR920JDE Control ChIP-seq /fly-donors/ENCDO680UDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 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recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47249/'], '@type': ['Target', 'Item'], 'name': 'woc-dmelanogaster', 'label': 'woc', '@id': '/targets/woc-dmelanogaster/', 'title': 'woc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e2a9a33d-f45e-42e3-8449-6c5bd1cd7c78', 'status': 'released'} dm3 3R 23032819 23112747 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 50 single-ended 438830498 Kevin White, UChicago f80e80f547d7c3efb42218296cb95d18 https://www.encodeproject.org/files/ENCFF558SFL/@@download/ENCFF558SFL.fastq.gz Illumina HiSeq 2500 /files/ENCFF967YPA/ released s3://encode-public/2015/07/23/382cd01f-8ba2-49b0-a8a5-128a2a6b9b40/ENCFF558SFL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF035ELZ bam bam alignments dm3 ENCSR851XBU Control ChIP-seq /fly-donors/ENCDO985YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47249/'], '@type': ['Target', 'Item'], 'name': 'woc-dmelanogaster', 'label': 'woc', '@id': '/targets/woc-dmelanogaster/', 'title': 'woc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e2a9a33d-f45e-42e3-8449-6c5bd1cd7c78', 'status': 'released'} dm3 3R 23032819 23112747 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF558SFL/ 599011871 Kevin White, UChicago aa3e8b4cac210907d9b216042ff61dd1 https://www.encodeproject.org/files/ENCFF035ELZ/@@download/ENCFF035ELZ.bam released s3://encode-public/2015/08/03/cc3acf00-38bf-468f-923f-d76b62d3da3a/ENCFF035ELZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF324DBR bigWig bigWig signal of unique reads dm3 ENCSR851XBU Control ChIP-seq /fly-donors/ENCDO985YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47249/'], '@type': ['Target', 'Item'], 'name': 'woc-dmelanogaster', 'label': 'woc', '@id': '/targets/woc-dmelanogaster/', 'title': 'woc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e2a9a33d-f45e-42e3-8449-6c5bd1cd7c78', 'status': 'released'} dm3 3R 23032819 23112747 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF035ELZ/ 15067075 Kevin White, UChicago 2437bcad98135a31542aacb648928c1c https://www.encodeproject.org/files/ENCFF324DBR/@@download/ENCFF324DBR.bigWig released s3://encode-public/2015/10/06/6734ed66-b01b-48f2-84d2-298394be287e/ENCFF324DBR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF364FDI bigWig bigWig read-depth normalized signal dm3 ENCSR851XBU Control ChIP-seq /fly-donors/ENCDO985YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47249/'], '@type': ['Target', 'Item'], 'name': 'woc-dmelanogaster', 'label': 'woc', '@id': '/targets/woc-dmelanogaster/', 'title': 'woc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e2a9a33d-f45e-42e3-8449-6c5bd1cd7c78', 'status': 'released'} dm3 3R 23032819 23112747 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF035ELZ/ 15068595 Kevin White, UChicago 756d6f934f7b2cfba11038202010ff2e https://www.encodeproject.org/files/ENCFF364FDI/@@download/ENCFF364FDI.bigWig released s3://encode-public/2015/10/06/d3950b78-b949-477d-a799-393bc8e446e0/ENCFF364FDI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF121PZW bam bam alignments dm6 ENCSR851XBU Control ChIP-seq /fly-donors/ENCDO985YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47249/'], '@type': ['Target', 'Item'], 'name': 'woc-dmelanogaster', 'label': 'woc', '@id': '/targets/woc-dmelanogaster/', 'title': 'woc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e2a9a33d-f45e-42e3-8449-6c5bd1cd7c78', 'status': 'released'} dm3 3R 23032819 23112747 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF558SFL/ 596755482 Kevin White, UChicago 836566e3b7f2e19227aac56840862dc0 https://www.encodeproject.org/files/ENCFF121PZW/@@download/ENCFF121PZW.bam released s3://encode-public/2016/04/22/b19a5ebc-f497-49da-86eb-d901978eb389/ENCFF121PZW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF530CIP bigWig bigWig signal of unique reads dm6 ENCSR851XBU Control ChIP-seq /fly-donors/ENCDO985YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47249/'], '@type': ['Target', 'Item'], 'name': 'woc-dmelanogaster', 'label': 'woc', '@id': '/targets/woc-dmelanogaster/', 'title': 'woc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e2a9a33d-f45e-42e3-8449-6c5bd1cd7c78', 'status': 'released'} dm3 3R 23032819 23112747 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF121PZW/ 17126634 Kevin White, UChicago b516c4a011659d7fe0cb5d5d936a7ce8 https://www.encodeproject.org/files/ENCFF530CIP/@@download/ENCFF530CIP.bigWig released s3://encode-public/2016/06/20/651d9051-1e0d-4b83-b78e-3f3530de4b94/ENCFF530CIP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF125LOL bigWig bigWig read-depth normalized signal dm6 ENCSR851XBU Control ChIP-seq /fly-donors/ENCDO985YKO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47249/'], '@type': ['Target', 'Item'], 'name': 'woc-dmelanogaster', 'label': 'woc', '@id': '/targets/woc-dmelanogaster/', 'title': 'woc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e2a9a33d-f45e-42e3-8449-6c5bd1cd7c78', 'status': 'released'} dm3 3R 23032819 23112747 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF121PZW/ 17127764 Kevin White, UChicago 8983c3865e43de22106dbd629916989c https://www.encodeproject.org/files/ENCFF125LOL/@@download/ENCFF125LOL.bigWig released s3://encode-public/2016/06/20/43b37d34-e31c-49ea-8683-c88562159a0c/ENCFF125LOL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF389SSZ tagAlign tagAlign alignments hg19 ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF411AOW/ 103673243 Anshul Kundaje, Stanford bf32f3c110c8119c789a3e3a647b3731 https://www.encodeproject.org/files/ENCFF389SSZ/@@download/ENCFF389SSZ.tagAlign.gz archived s3://encode-public/2016/05/02/7b42a460-36d7-421f-87b4-942c4422b9f1/ENCFF389SSZ.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF411AOW fastq fastq reads ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1004064566 Zhiping Weng, UMass 3bfcd93be71e1522f038ec9da562178b SRA:SRR1107950 https://www.encodeproject.org/files/ENCFF411AOW/@@download/ENCFF411AOW.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/20/19092035-fb1e-41da-81b4-79cdca923d57/ENCFF411AOW.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF853ZBX bam bam unfiltered alignments GRCh38 ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411AOW/, /files/ENCFF643CGH/ 1212696933 ENCODE Processing Pipeline 4cbdbcdef44c1158cb8895c5bdb603ec https://www.encodeproject.org/files/ENCFF853ZBX/@@download/ENCFF853ZBX.bam released s3://encode-public/2016/12/19/81575792-86d9-4bd4-ac81-fdf96de2cfa2/ENCFF853ZBX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF791PNS bam bam unfiltered alignments hg19 ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411AOW/, /files/ENCFF807MUK/ 1206115583 ENCODE Processing Pipeline 18368588e933a08a84043b395a3c350f https://www.encodeproject.org/files/ENCFF791PNS/@@download/ENCFF791PNS.bam released s3://encode-public/2016/12/19/7abf689f-b5bf-4ee4-a85a-5546e21bc8f2/ENCFF791PNS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF637QLW bam bam alignments hg19 ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411AOW/, /files/ENCFF807MUK/ 619146295 ENCODE Processing Pipeline 5f219f5bf26540bfe10f758e603b83bb https://www.encodeproject.org/files/ENCFF637QLW/@@download/ENCFF637QLW.bam released s3://encode-public/2016/12/19/ec13fdcb-85c5-47ab-96c0-9f5985e34065/ENCFF637QLW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF729OAL bam bam alignments GRCh38 ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF411AOW/, /files/ENCFF643CGH/ 619031657 ENCODE Processing Pipeline 624d3f68d5f7fed5f3944d7e20f0b4d7 https://www.encodeproject.org/files/ENCFF729OAL/@@download/ENCFF729OAL.bam released s3://encode-public/2016/12/19/d0e3158d-d535-4788-961a-76d110368948/ENCFF729OAL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF852OYV bam bam unfiltered alignments GRCh38 ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF411AOW/ 1175304220 ENCODE Processing Pipeline b01feea7427b410a2f20587583bc05a9 https://www.encodeproject.org/files/ENCFF852OYV/@@download/ENCFF852OYV.bam released s3://encode-public/2020/10/08/e85fb656-4111-43c5-8834-4085c136b9ce/ENCFF852OYV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF749JDM bam bam alignments GRCh38 ENCSR612PJQ Control ChIP-seq /human-donors/ENCDO441UHQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF411AOW/ 675915859 ENCODE Processing Pipeline 7245f7fb2f485507f8810863e6afeffd https://www.encodeproject.org/files/ENCFF749JDM/@@download/ENCFF749JDM.bam released s3://encode-public/2020/10/08/aa0a908c-c4b5-4227-b210-c1f8e4dc3bed/ENCFF749JDM.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF802XYI fastq fastq reads ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1484756848 Bradley Bernstein, Broad 21793a66b66ac6aa373dda2eca294424 SRA:SRR10838311 https://www.encodeproject.org/files/ENCFF802XYI/@@download/ENCFF802XYI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/adf48d5e-adcd-47da-bdd7-e648ec573867/ENCFF802XYI.fastq.gz ENCFF126HXI fastq fastq reads ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1539392479 Bradley Bernstein, Broad 21051b3e81edf10652cb01f2c0c04415 SRA:SRR10838312 https://www.encodeproject.org/files/ENCFF126HXI/@@download/ENCFF126HXI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/c8d38b17-aa3b-4f99-8e87-26d2dfcd4396/ENCFF126HXI.fastq.gz ENCFF065JQQ fastq fastq reads ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 965549491 Bradley Bernstein, Broad b7a80e14c93aefad5328efa5b9233b52 SRA:SRR10838313 https://www.encodeproject.org/files/ENCFF065JQQ/@@download/ENCFF065JQQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/1d4bbfc6-fd31-4fa4-8c38-9fe753d03231/ENCFF065JQQ.fastq.gz ENCFF634HGM fastq fastq reads ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 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/human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF126HXI/, /files/ENCFF634HGM/, /files/ENCFF065JQQ/, /files/ENCFF643CGH/, /files/ENCFF802XYI/ 3850997605 ENCODE Processing Pipeline 8caa9d8f27ec34afcd738a5a3180da26 https://www.encodeproject.org/files/ENCFF329HGQ/@@download/ENCFF329HGQ.bam released s3://encode-public/2018/11/27/576b46eb-a3cd-4453-a117-9ac597558997/ENCFF329HGQ.bam ENCODE3 GRCh38 archived ENCFF810BPW bam bam unfiltered alignments hg19 ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF126HXI/, /files/ENCFF634HGM/, /files/ENCFF807MUK/, /files/ENCFF065JQQ/, /files/ENCFF802XYI/ 4622558224 ENCODE Processing Pipeline 01e07420461869a5a065877c288f2e8d https://www.encodeproject.org/files/ENCFF810BPW/@@download/ENCFF810BPW.bam released s3://encode-public/2018/11/27/25c8a4d1-e5a7-4a57-a361-984d2da07a99/ENCFF810BPW.bam ENCODE3 hg19 archived ENCFF627AIB bam bam alignments hg19 ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF126HXI/, /files/ENCFF634HGM/, /files/ENCFF807MUK/, /files/ENCFF065JQQ/, /files/ENCFF802XYI/ 3846213471 ENCODE Processing Pipeline d026b193ff09ba253b9b31814b5cb306 https://www.encodeproject.org/files/ENCFF627AIB/@@download/ENCFF627AIB.bam released s3://encode-public/2018/11/27/73f73fc3-ca30-4068-92ed-f8e47242b9b5/ENCFF627AIB.bam ENCODE3 hg19 archived ENCFF148DGE bam bam unfiltered alignments GRCh38 ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF634HGM/, /files/ENCFF110MCL/, /files/ENCFF065JQQ/, /files/ENCFF802XYI/, /files/ENCFF126HXI/ 4693894111 ENCODE Processing Pipeline 1b25e070907ab1285d445056dce428e7 https://www.encodeproject.org/files/ENCFF148DGE/@@download/ENCFF148DGE.bam released s3://encode-public/2020/09/19/54653cb1-aad6-4eb3-9855-d29e2320fbed/ENCFF148DGE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF703FET bam bam alignments GRCh38 ENCSR714GXC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF634HGM/, /files/ENCFF110MCL/, /files/ENCFF065JQQ/, /files/ENCFF802XYI/, /files/ENCFF126HXI/ 3917811168 ENCODE Processing Pipeline 929060046fbb4b8288dd593d79e2a902 https://www.encodeproject.org/files/ENCFF703FET/@@download/ENCFF703FET.bam released s3://encode-public/2020/09/19/4b534bcd-1f5a-43c6-af4d-4b0e6fe9b9b9/ENCFF703FET.bam ENCODE4 v1.5.1 GRCh38 released ENCFF078REN tagAlign tagAlign alignments hg19 ENCSR674ANR Control ChIP-seq /human-donors/ENCDO261FUX/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172868/ 136907585 Anshul Kundaje, Stanford 681580d3f05a99d510d45efb2c030c6f https://www.encodeproject.org/files/ENCFF078REN/@@download/ENCFF078REN.tagAlign.gz archived s3://encode-public/2016/03/30/6c19794c-2332-4a9a-b59c-60c23e04266e/ENCFF078REN.tagAlign.gz Lab custom hg19 archived low read depth ENCFF368VZV bam bam redacted unfiltered alignments GRCh38 ENCSR674ANR Control ChIP-seq /human-donors/ENCDO261FUX/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF811IMB/ 283469209 ENCODE Processing Pipeline 562c1d0de244ad6d00c475bcf3e20e26 https://www.encodeproject.org/files/ENCFF368VZV/@@download/ENCFF368VZV.bam released s3://encode-public/2017/11/09/02fb3f50-3d0f-44ec-a9a6-f5545c5ad3b5/ENCFF368VZV.bam ENCODE3 GRCh38 archived low read depth ENCFF881GVR bam bam redacted alignments GRCh38 ENCSR674ANR Control ChIP-seq /human-donors/ENCDO261FUX/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF811IMB/ 226530365 ENCODE Processing Pipeline d583e1567e94f3b14fca53aa196c265f https://www.encodeproject.org/files/ENCFF881GVR/@@download/ENCFF881GVR.bam released s3://encode-public/2017/11/09/709b150d-f529-4844-8366-647e8ea8ad61/ENCFF881GVR.bam ENCODE3 GRCh38 archived low read depth ENCFF952YVH bam bam redacted unfiltered alignments hg19 ENCSR674ANR Control ChIP-seq /human-donors/ENCDO261FUX/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF811IMB/ 278174620 ENCODE Processing Pipeline 91dfad440bc5cfcbe21f8265bd6150d4 https://www.encodeproject.org/files/ENCFF952YVH/@@download/ENCFF952YVH.bam released s3://encode-public/2018/01/20/b22f6564-8f8e-4513-b789-b76d5eb56551/ENCFF952YVH.bam ENCODE3 hg19 archived low read depth ENCFF658MFG bam bam redacted alignments hg19 ENCSR674ANR Control ChIP-seq /human-donors/ENCDO261FUX/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF811IMB/ 226165234 ENCODE Processing Pipeline 0c7d3e5a00d90c791967bc2133c17622 https://www.encodeproject.org/files/ENCFF658MFG/@@download/ENCFF658MFG.bam released s3://encode-public/2018/01/20/db51da77-32f8-4f5a-a0e0-9e831d925ffe/ENCFF658MFG.bam ENCODE3 hg19 archived low read depth ENCFF826VBW bam bam redacted alignments GRCh38 ENCSR674ANR Control ChIP-seq /human-donors/ENCDO261FUX/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF981SVA/ 1297556060 ENCODE Processing Pipeline 1c17bd1a5e3041830ab0d90fd45eb569 https://www.encodeproject.org/files/ENCFF826VBW/@@download/ENCFF826VBW.bam released s3://encode-public/2021/01/28/f4925681-524e-4877-aa4d-88504bd0e954/ENCFF826VBW.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF486WJM fastq fastq reads ENCSR899CDG Control ChIP-seq /fly-donors/ENCDO366MPG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44936/'], '@type': ['Target', 'Item'], 'name': 'Eip93F-dmelanogaster', 'label': 'Eip93F', '@id': '/targets/Eip93F-dmelanogaster/', 'title': 'Eip93F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1113e4ed-86ae-4290-977b-e51a26ae03de', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1422316153 Kevin White, UChicago 43fc278356a42f599a77c441e226e6e8 https://www.encodeproject.org/files/ENCFF486WJM/@@download/ENCFF486WJM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/d25d2de0-5517-4786-90e6-6d10674e0357/ENCFF486WJM.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF176FBJ bam bam alignments dm3 ENCSR899CDG Control ChIP-seq /fly-donors/ENCDO366MPG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44936/'], '@type': ['Target', 'Item'], 'name': 'Eip93F-dmelanogaster', 'label': 'Eip93F', '@id': '/targets/Eip93F-dmelanogaster/', 'title': 'Eip93F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1113e4ed-86ae-4290-977b-e51a26ae03de', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF486WJM/ 1870157564 Kevin White, UChicago d9b02e4be184ce78bb442d0bd7d2e6a9 https://www.encodeproject.org/files/ENCFF176FBJ/@@download/ENCFF176FBJ.bam released s3://encode-public/2015/08/03/6a6de4e2-75a8-4368-9063-2b67b006361d/ENCFF176FBJ.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF294RRQ bigWig bigWig read-depth normalized signal dm3 ENCSR899CDG Control ChIP-seq /fly-donors/ENCDO366MPG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44936/'], '@type': ['Target', 'Item'], 'name': 'Eip93F-dmelanogaster', 'label': 'Eip93F', '@id': '/targets/Eip93F-dmelanogaster/', 'title': 'Eip93F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1113e4ed-86ae-4290-977b-e51a26ae03de', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF176FBJ/ 15281359 Kevin White, UChicago 8188fed58b779b3202f7a617cd32e035 https://www.encodeproject.org/files/ENCFF294RRQ/@@download/ENCFF294RRQ.bigWig released s3://encode-public/2015/10/06/f77759dc-c3be-492e-a633-1c54becfba8b/ENCFF294RRQ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF931CVC bigWig bigWig signal of unique reads dm3 ENCSR899CDG Control ChIP-seq /fly-donors/ENCDO366MPG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44936/'], '@type': ['Target', 'Item'], 'name': 'Eip93F-dmelanogaster', 'label': 'Eip93F', '@id': '/targets/Eip93F-dmelanogaster/', 'title': 'Eip93F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1113e4ed-86ae-4290-977b-e51a26ae03de', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF176FBJ/ 15280115 Kevin White, UChicago a3bd99f2a6ee061068475e98c1bd40b4 https://www.encodeproject.org/files/ENCFF931CVC/@@download/ENCFF931CVC.bigWig released s3://encode-public/2015/10/06/c7ef0687-d4d0-45d1-a015-c7bce0efabed/ENCFF931CVC.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF306AZA bam bam alignments dm6 ENCSR899CDG Control ChIP-seq /fly-donors/ENCDO366MPG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44936/'], '@type': ['Target', 'Item'], 'name': 'Eip93F-dmelanogaster', 'label': 'Eip93F', '@id': '/targets/Eip93F-dmelanogaster/', 'title': 'Eip93F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1113e4ed-86ae-4290-977b-e51a26ae03de', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF486WJM/ 1851943971 Kevin White, UChicago ed5088be22308f6267b60d3c6cd6f60d https://www.encodeproject.org/files/ENCFF306AZA/@@download/ENCFF306AZA.bam released s3://encode-public/2016/04/21/fca13d8b-bb67-4961-af4f-c0c89cbdb25b/ENCFF306AZA.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF276HAY bigWig bigWig signal of unique reads dm6 ENCSR899CDG Control ChIP-seq /fly-donors/ENCDO366MPG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44936/'], '@type': ['Target', 'Item'], 'name': 'Eip93F-dmelanogaster', 'label': 'Eip93F', '@id': '/targets/Eip93F-dmelanogaster/', 'title': 'Eip93F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1113e4ed-86ae-4290-977b-e51a26ae03de', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF306AZA/ 17386252 Kevin White, UChicago d2203923dfa99036e107d54f8ac97092 https://www.encodeproject.org/files/ENCFF276HAY/@@download/ENCFF276HAY.bigWig released s3://encode-public/2016/06/21/28be5d5f-b88c-4b96-b1b2-70eb6bbc298f/ENCFF276HAY.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF381ZJK bigWig bigWig read-depth normalized signal dm6 ENCSR899CDG Control ChIP-seq /fly-donors/ENCDO366MPG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44936/'], '@type': ['Target', 'Item'], 'name': 'Eip93F-dmelanogaster', 'label': 'Eip93F', '@id': '/targets/Eip93F-dmelanogaster/', 'title': 'Eip93F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1113e4ed-86ae-4290-977b-e51a26ae03de', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF306AZA/ 17386045 Kevin White, UChicago 7f866f49e188ca4b12d943428b790e16 https://www.encodeproject.org/files/ENCFF381ZJK/@@download/ENCFF381ZJK.bigWig released s3://encode-public/2016/06/21/c20344d3-7341-42fe-8cd4-c401d393688b/ENCFF381ZJK.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF859OFF tagAlign tagAlign alignments hg19 ENCSR426ZZP Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007106 iPS-18b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF466QZV/ 91190501 Anshul Kundaje, Stanford 873b2a30216c49f423427355211b4751 https://www.encodeproject.org/files/ENCFF859OFF/@@download/ENCFF859OFF.tagAlign.gz archived s3://encode-public/2016/05/02/b5e1f325-c73b-4d63-934c-9d103af4fefe/ENCFF859OFF.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF466QZV fastq fastq reads ENCSR426ZZP Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007106 iPS-18b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 704598187 Zhiping Weng, UMass 20dd388432864306f31ceac4171b8986 SRA:SRR1068403 https://www.encodeproject.org/files/ENCFF466QZV/@@download/ENCFF466QZV.fastq.gz Illumina Genome Analyzer II archived s3://encode-public/2016/10/19/38fad480-1203-42b8-9f93-25cdb8ea0d04/ENCFF466QZV.fastq.gz low read depth, low read length ENCFF400XWU bam bam unfiltered alignments hg19 ENCSR426ZZP Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007106 iPS-18b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF466QZV/, /files/ENCFF807MUK/ 833471044 ENCODE Processing Pipeline 4c78cff847b9deee9bdfc8cefddd2a39 https://www.encodeproject.org/files/ENCFF400XWU/@@download/ENCFF400XWU.bam archived s3://encode-public/2016/12/19/369f00fa-8530-4e0e-beb8-26f79f809a1b/ENCFF400XWU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF743LDO bam bam unfiltered alignments GRCh38 ENCSR426ZZP Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007106 iPS-18b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF466QZV/, /files/ENCFF643CGH/ 836692397 ENCODE Processing Pipeline 9fb5b269aa886f288faf012b44732ada https://www.encodeproject.org/files/ENCFF743LDO/@@download/ENCFF743LDO.bam archived s3://encode-public/2016/12/19/23997350-9ba0-4a0d-9bcb-d47f3cae3613/ENCFF743LDO.bam ENCODE3 GRCh38 released low read depth, low read length ENCFF096SNB bam bam alignments GRCh38 ENCSR426ZZP Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007106 iPS-18b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF466QZV/, /files/ENCFF643CGH/ 554963735 ENCODE Processing Pipeline b3bb5b8225d93d88bec590fc96088cc1 https://www.encodeproject.org/files/ENCFF096SNB/@@download/ENCFF096SNB.bam archived s3://encode-public/2016/12/19/15ba9599-5ac6-4941-8ed6-5886d55897f3/ENCFF096SNB.bam ENCODE3 GRCh38 released low read depth, low read length ENCFF894MCE bam bam alignments hg19 ENCSR426ZZP Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007106 iPS-18b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF466QZV/, /files/ENCFF807MUK/ 555227862 ENCODE Processing Pipeline 9ec8f293eda65fd6a4d69ac00adafad3 https://www.encodeproject.org/files/ENCFF894MCE/@@download/ENCFF894MCE.bam archived s3://encode-public/2016/12/19/3713422d-782e-47f4-933a-1279dfee1a6f/ENCFF894MCE.bam ENCODE3 hg19 archived low read depth, low read length ENCFF778CWC bam bam alignments dm3 ENCSR323PMD Control ChIP-seq /fly-donors/ENCDO820ELA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34875/'], '@type': ['Target', 'Item'], 'name': 'NC2β-dmelanogaster', 'label': 'NC2β', '@id': '/targets/NC2%CE%B2-dmelanogaster/', 'title': 'NC2β (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e288a620-c962-445b-a95d-daf3b7b74d10', 'status': 'released'} dm3 2L 15003803 15022518 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF239UBR/ 1323674771 Kevin White, UChicago e5494699d65b1627622c90ded5700a1c https://www.encodeproject.org/files/ENCFF778CWC/@@download/ENCFF778CWC.bam /files/ENCFF239UBR/ released s3://encode-public/2015/08/05/9d078f00-eb35-4399-9011-7e17a5f9565f/ENCFF778CWC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF239UBR fastq fastq reads ENCSR323PMD Control ChIP-seq /fly-donors/ENCDO820ELA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34875/'], '@type': ['Target', 'Item'], 'name': 'NC2β-dmelanogaster', 'label': 'NC2β', '@id': '/targets/NC2%CE%B2-dmelanogaster/', 'title': 'NC2β (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e288a620-c962-445b-a95d-daf3b7b74d10', 'status': 'released'} dm3 2L 15003803 15022518 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 901784926 Kevin White, UChicago 65f7d9b427402742533345389fa5c85d https://www.encodeproject.org/files/ENCFF239UBR/@@download/ENCFF239UBR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/d0cb45e8-8253-4550-b57a-0be787f2fba0/ENCFF239UBR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF603SEE bigWig bigWig signal of unique reads dm3 ENCSR323PMD Control ChIP-seq /fly-donors/ENCDO820ELA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34875/'], '@type': ['Target', 'Item'], 'name': 'NC2β-dmelanogaster', 'label': 'NC2β', '@id': '/targets/NC2%CE%B2-dmelanogaster/', 'title': 'NC2β (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e288a620-c962-445b-a95d-daf3b7b74d10', 'status': 'released'} dm3 2L 15003803 15022518 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF778CWC/ 15448150 Kevin White, UChicago 01c2ba276bfc1123745d8a680b24df3d https://www.encodeproject.org/files/ENCFF603SEE/@@download/ENCFF603SEE.bigWig released s3://encode-public/2015/10/06/17901133-c428-49e3-85a6-11ecc8667add/ENCFF603SEE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF757BXX bigWig bigWig read-depth normalized signal dm3 ENCSR323PMD Control ChIP-seq /fly-donors/ENCDO820ELA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34875/'], '@type': ['Target', 'Item'], 'name': 'NC2β-dmelanogaster', 'label': 'NC2β', '@id': '/targets/NC2%CE%B2-dmelanogaster/', 'title': 'NC2β (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e288a620-c962-445b-a95d-daf3b7b74d10', 'status': 'released'} dm3 2L 15003803 15022518 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF778CWC/ 15496714 Kevin White, UChicago 6bad53faba51f07daa7ea84d911dc6a1 https://www.encodeproject.org/files/ENCFF757BXX/@@download/ENCFF757BXX.bigWig released s3://encode-public/2015/10/06/b6213def-9aaa-4519-a9e4-a21d0e9f399d/ENCFF757BXX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF416UKK bam bam alignments dm6 ENCSR323PMD Control ChIP-seq /fly-donors/ENCDO820ELA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34875/'], '@type': ['Target', 'Item'], 'name': 'NC2β-dmelanogaster', 'label': 'NC2β', '@id': '/targets/NC2%CE%B2-dmelanogaster/', 'title': 'NC2β (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e288a620-c962-445b-a95d-daf3b7b74d10', 'status': 'released'} dm3 2L 15003803 15022518 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF239UBR/ 1318523493 Kevin White, UChicago 6291715be107b195a73c97069a33f265 https://www.encodeproject.org/files/ENCFF416UKK/@@download/ENCFF416UKK.bam released s3://encode-public/2016/04/22/79d6d78e-daa4-4a55-8bb2-9f53b7916235/ENCFF416UKK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF698SLA bigWig bigWig read-depth normalized signal dm6 ENCSR323PMD Control ChIP-seq /fly-donors/ENCDO820ELA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34875/'], '@type': ['Target', 'Item'], 'name': 'NC2β-dmelanogaster', 'label': 'NC2β', '@id': '/targets/NC2%CE%B2-dmelanogaster/', 'title': 'NC2β (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e288a620-c962-445b-a95d-daf3b7b74d10', 'status': 'released'} dm3 2L 15003803 15022518 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF416UKK/ 17576972 Kevin White, UChicago a08d09b320b05fe33da80ad33dfd7293 https://www.encodeproject.org/files/ENCFF698SLA/@@download/ENCFF698SLA.bigWig released s3://encode-public/2016/06/20/d1f30c15-8c29-41eb-96c4-56dce7f1ea09/ENCFF698SLA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF165HNO bigWig bigWig signal of unique reads dm6 ENCSR323PMD Control ChIP-seq /fly-donors/ENCDO820ELA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34875/'], '@type': ['Target', 'Item'], 'name': 'NC2β-dmelanogaster', 'label': 'NC2β', '@id': '/targets/NC2%CE%B2-dmelanogaster/', 'title': 'NC2β (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e288a620-c962-445b-a95d-daf3b7b74d10', 'status': 'released'} dm3 2L 15003803 15022518 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF416UKK/ 17509877 Kevin White, UChicago e62b717f873f674bf6ef85557db2a904 https://www.encodeproject.org/files/ENCFF165HNO/@@download/ENCFF165HNO.bigWig released s3://encode-public/2016/06/20/c27a0a51-0535-4d63-a4ce-169adb15811f/ENCFF165HNO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF082CUP tagAlign tagAlign alignments hg19 ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF624LOP/ 184520289 Anshul Kundaje, Stanford 52c2f717b03c3d6b40fd239d293d56f6 https://www.encodeproject.org/files/ENCFF082CUP/@@download/ENCFF082CUP.tagAlign.gz archived s3://encode-public/2016/05/02/86b8b563-581a-4511-b7ed-ee8bbb51aac9/ENCFF082CUP.tagAlign.gz Lab custom hg19 archived low read length ENCFF624LOP fastq fastq reads ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1264689992 Zhiping Weng, UMass 7112ac550ccad3e14c580f1cb011ed4b SRA:SRR1068375 https://www.encodeproject.org/files/ENCFF624LOP/@@download/ENCFF624LOP.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/48af39a5-0d43-45e6-9bb8-80449f02fb7c/ENCFF624LOP.fastq.gz low read length ENCFF008OPN bam bam alignments GRCh38 ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF624LOP/ 1167693404 ENCODE Processing Pipeline e552310e2328ceb096e2bdd94c1531da https://www.encodeproject.org/files/ENCFF008OPN/@@download/ENCFF008OPN.bam released s3://encode-public/2020/10/08/10e87a10-820c-40ed-92f0-16e25826540b/ENCFF008OPN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF003BWS bam bam unfiltered alignments hg19 ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF624LOP/, /files/ENCFF807MUK/ 1469671344 ENCODE Processing Pipeline d7b8b6d4bce8f0f61b0aba421b5851da https://www.encodeproject.org/files/ENCFF003BWS/@@download/ENCFF003BWS.bam released s3://encode-public/2016/12/19/ad455377-819c-4c61-8db0-3d24b829aa07/ENCFF003BWS.bam ENCODE3 hg19 archived low read length ENCFF735OQZ bam bam alignments hg19 ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF624LOP/, /files/ENCFF807MUK/ 1087182774 ENCODE Processing Pipeline cc0beacd7c7989ec29c929a1d63d8c5f https://www.encodeproject.org/files/ENCFF735OQZ/@@download/ENCFF735OQZ.bam released s3://encode-public/2016/12/19/deeafb03-5d46-40eb-9d13-c80943ca0b02/ENCFF735OQZ.bam ENCODE3 hg19 archived low read length ENCFF224UAS bam bam unfiltered alignments GRCh38 ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF624LOP/, /files/ENCFF643CGH/ 1477282361 ENCODE Processing Pipeline 694b02424f0a20c741fd69a6cdb16dc1 https://www.encodeproject.org/files/ENCFF224UAS/@@download/ENCFF224UAS.bam released s3://encode-public/2016/12/19/66938e79-c268-440a-91f1-b9f8e9e53bd4/ENCFF224UAS.bam ENCODE3 GRCh38 archived low read length ENCFF541WSY bam bam alignments GRCh38 ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF624LOP/, /files/ENCFF643CGH/ 1086962469 ENCODE Processing Pipeline 0a887107ea09fa34d2c3bff7619e68e8 https://www.encodeproject.org/files/ENCFF541WSY/@@download/ENCFF541WSY.bam released s3://encode-public/2016/12/19/2ae2388f-d405-4369-922d-9c5d2eb4a3c5/ENCFF541WSY.bam ENCODE3 GRCh38 archived low read length ENCFF411CRI bam bam unfiltered alignments GRCh38 ENCSR065SFQ Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF624LOP/ 1444873717 ENCODE Processing Pipeline 3918e6eb8ac07e90f8c0ba488ae52e2e https://www.encodeproject.org/files/ENCFF411CRI/@@download/ENCFF411CRI.bam released s3://encode-public/2020/10/08/b1b9cee6-7821-43b1-913f-07828bb91d93/ENCFF411CRI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF133ALD fastq fastq reads ENCSR328LRC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 196577423 Kevin White, UChicago eca3dec64946eab2777b7b91d2dbdd86 https://www.encodeproject.org/files/ENCFF133ALD/@@download/ENCFF133ALD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF237UKX/ released s3://encode-public/2015/07/30/91c57993-efce-4af7-acb2-81e38ad4ddd8/ENCFF133ALD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF696EYK bam bam alignments ce10 ENCSR328LRC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF133ALD/ 257460761 Kevin White, UChicago db71ebafa6c322551ede6f217e757cf5 https://www.encodeproject.org/files/ENCFF696EYK/@@download/ENCFF696EYK.bam released s3://encode-public/2015/08/19/e0abc056-699a-4116-aba2-6d4cb796a7c6/ENCFF696EYK.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF416OVH bigWig bigWig signal of unique reads ce10 ENCSR328LRC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF696EYK/ 10063758 Kevin White, UChicago 8a7c22b3b78bd3514b25572db2061866 https://www.encodeproject.org/files/ENCFF416OVH/@@download/ENCFF416OVH.bigWig released s3://encode-public/2015/10/02/44144f2b-0070-4a69-a779-39ba90d7fe6a/ENCFF416OVH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF851QUB bigWig bigWig read-depth normalized signal ce10 ENCSR328LRC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF696EYK/ 10069141 Kevin White, UChicago b4dfb7cbba391f81d62a93d9587e0ade https://www.encodeproject.org/files/ENCFF851QUB/@@download/ENCFF851QUB.bigWig released s3://encode-public/2015/10/02/20e891f2-7cfd-4938-aad2-789cab7b0d8f/ENCFF851QUB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF419OWT bam bam alignments ce11 ENCSR328LRC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF133ALD/ 257756801 Kevin White, UChicago 734796cb0e17f52b4a41b3127417f53b https://www.encodeproject.org/files/ENCFF419OWT/@@download/ENCFF419OWT.bam released s3://encode-public/2016/01/16/d74213d3-ecea-48af-b5f3-9713ad1639ac/ENCFF419OWT.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF864HFS bigWig bigWig signal of unique reads ce11 ENCSR328LRC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF419OWT/ 10061122 Kevin White, UChicago 5e596edaec1115519a7107ad2ee6bd8e https://www.encodeproject.org/files/ENCFF864HFS/@@download/ENCFF864HFS.bigWig released s3://encode-public/2016/02/03/17478696-f78c-4d8d-8f5c-edc613510db3/ENCFF864HFS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF904DTB bigWig bigWig read-depth normalized signal ce11 ENCSR328LRC Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF419OWT/ 10066039 Kevin White, UChicago 06d204f6efb7a881a53e2a2e5e62978c https://www.encodeproject.org/files/ENCFF904DTB/@@download/ENCFF904DTB.bigWig released s3://encode-public/2016/02/03/2452ba9a-b552-476f-a8aa-a6e1ae82ec60/ENCFF904DTB.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF706PHJ fastq fastq reads ENCSR467AKB Control ChIP-seq /fly-donors/ENCDO668XHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42210/'], '@type': ['Target', 'Item'], 'name': 'gl-dmelanogaster', 'label': 'gl', '@id': '/targets/gl-dmelanogaster/', 'title': 'gl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '07ae57ad-4da0-4c9c-b5f5-d19d9357e45a', 'status': 'released'} dm3 3R 14138073 14224014 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 566359816 Kevin White, UChicago aafe05f7a41ac3e717d8d071c96a59f2 https://www.encodeproject.org/files/ENCFF706PHJ/@@download/ENCFF706PHJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF499PLN/, /files/ENCFF148KBR/ released s3://encode-public/2018/05/29/5055242f-769f-4c74-b84c-3204490e66f0/ENCFF706PHJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF252JII bam bam alignments dm6 ENCSR467AKB Control ChIP-seq /fly-donors/ENCDO668XHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42210/'], '@type': ['Target', 'Item'], 'name': 'gl-dmelanogaster', 'label': 'gl', '@id': '/targets/gl-dmelanogaster/', 'title': 'gl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '07ae57ad-4da0-4c9c-b5f5-d19d9357e45a', 'status': 'released'} dm3 3R 14138073 14224014 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF706PHJ/, /files/ENCFF479RCH/ 748014725 Kevin White, UChicago c500e8b08105fee69a98db9328009ae7 https://www.encodeproject.org/files/ENCFF252JII/@@download/ENCFF252JII.bam released s3://encode-public/2018/05/29/620cc78e-6e36-4715-99d7-32a2844b4aa7/ENCFF252JII.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF501XKT bigWig bigWig read-depth normalized signal dm6 ENCSR467AKB Control ChIP-seq /fly-donors/ENCDO668XHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42210/'], '@type': ['Target', 'Item'], 'name': 'gl-dmelanogaster', 'label': 'gl', '@id': '/targets/gl-dmelanogaster/', 'title': 'gl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '07ae57ad-4da0-4c9c-b5f5-d19d9357e45a', 'status': 'released'} dm3 3R 14138073 14224014 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF252JII/ 17586086 Kevin White, UChicago 8e50715bd41df4dd85e518bfd742d471 https://www.encodeproject.org/files/ENCFF501XKT/@@download/ENCFF501XKT.bigWig released s3://encode-public/2018/05/30/f0122861-d90d-41a8-a1df-6582f7d42198/ENCFF501XKT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF773RMH bigWig bigWig signal of unique reads dm6 ENCSR467AKB Control ChIP-seq /fly-donors/ENCDO668XHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42210/'], '@type': ['Target', 'Item'], 'name': 'gl-dmelanogaster', 'label': 'gl', '@id': '/targets/gl-dmelanogaster/', 'title': 'gl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '07ae57ad-4da0-4c9c-b5f5-d19d9357e45a', 'status': 'released'} dm3 3R 14138073 14224014 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF252JII/ 17532678 Kevin White, UChicago 67ac82b81ee8676bb647adc3ec0f4f63 https://www.encodeproject.org/files/ENCFF773RMH/@@download/ENCFF773RMH.bigWig released s3://encode-public/2018/05/30/8522361d-84e2-4626-ae01-8c8f9922731d/ENCFF773RMH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF563OAO tagAlign tagAlign alignments hg19 ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF224FXM/ 230395623 Anshul Kundaje, Stanford 2afbd2716465187aeda6a61ad1a352b2 https://www.encodeproject.org/files/ENCFF563OAO/@@download/ENCFF563OAO.tagAlign.gz archived s3://encode-public/2016/03/30/3e3126c4-f9db-4840-a18b-90a14c907d36/ENCFF563OAO.tagAlign.gz Lab custom hg19 archived low read length ENCFF224FXM fastq fastq reads ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1535213249 Zhiping Weng, UMass 4227262f96b943816a548e5fc74a9a8a SRA:SRR486249 https://www.encodeproject.org/files/ENCFF224FXM/@@download/ENCFF224FXM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/21/0691d33c-988c-46da-986e-3fd88ac6150f/ENCFF224FXM.fastq.gz low read length ENCFF664TUB tagAlign tagAlign alignments hg19 ENCSR687YOP Control ChIP-seq UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 202652656 Anshul Kundaje, Stanford fb9886fc144b92ba0e98247d15b0f1aa https://www.encodeproject.org/files/ENCFF664TUB/@@download/ENCFF664TUB.tagAlign.gz archived s3://encode-public/2016/02/11/20b85cf8-aa78-4522-97b1-5feadfdf808c/ENCFF664TUB.tagAlign.gz Lab custom hg19 archived low read length ENCFF356XXK bam bam unfiltered alignments GRCh38 ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF224FXM/ 1975357842 ENCODE Processing Pipeline 419e2c655c6f59ca9f1da9eed065f78c https://www.encodeproject.org/files/ENCFF356XXK/@@download/ENCFF356XXK.bam released s3://encode-public/2017/03/20/7fd02599-a4ea-4ff0-b163-dcc3ab1aad82/ENCFF356XXK.bam ENCODE3 GRCh38 archived low read length ENCFF034DXU bam bam alignments GRCh38 ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF224FXM/ 1191479945 ENCODE Processing Pipeline b206045a5c9a672e98c7942984291d67 https://www.encodeproject.org/files/ENCFF034DXU/@@download/ENCFF034DXU.bam released s3://encode-public/2017/03/20/5b0e3b09-fd13-41ed-a9f0-09d0a9949353/ENCFF034DXU.bam ENCODE3 GRCh38 archived low read length ENCFF341JIM bam bam unfiltered alignments hg19 ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF224FXM/ 1962806183 ENCODE Processing Pipeline 0faa2e1daefb8717218e8538d75754aa https://www.encodeproject.org/files/ENCFF341JIM/@@download/ENCFF341JIM.bam released s3://encode-public/2017/03/21/a97cfca6-5cb8-4e54-859f-08530cfc021d/ENCFF341JIM.bam ENCODE3 hg19 archived low read length ENCFF433RZW bam bam alignments hg19 ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF224FXM/ 1191517526 ENCODE Processing Pipeline 74af110a3dfd30b926a729cde0269e47 https://www.encodeproject.org/files/ENCFF433RZW/@@download/ENCFF433RZW.bam released s3://encode-public/2017/03/21/fa081a7e-0e3c-4df1-b8f6-3024d7297bdf/ENCFF433RZW.bam ENCODE3 hg19 archived low read length ENCFF064SNW bam bam alignments GRCh38 ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF224FXM/ 1317592661 ENCODE Processing Pipeline d910b3857c77c5777ecabb73dbc994bd https://www.encodeproject.org/files/ENCFF064SNW/@@download/ENCFF064SNW.bam released s3://encode-public/2020/10/08/04ba63e4-475d-4380-8773-956c23e79cec/ENCFF064SNW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF927HIN bam bam unfiltered alignments GRCh38 ENCSR687YOP Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF224FXM/ 1899466815 ENCODE Processing Pipeline 370f8d473c8e44798298207b13af116f https://www.encodeproject.org/files/ENCFF927HIN/@@download/ENCFF927HIN.bam released s3://encode-public/2020/10/08/eb70f0b7-b3cf-4c7b-a52c-939d597a2787/ENCFF927HIN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF178DRP tagAlign tagAlign alignments hg19 ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF167BJI/ 284770769 Anshul Kundaje, Stanford 91d9a7453a0ab52187fbf87438ea9739 https://www.encodeproject.org/files/ENCFF178DRP/@@download/ENCFF178DRP.tagAlign.gz archived s3://encode-public/2016/03/30/bae7f27a-61af-4104-a694-b03b59fbf537/ENCFF178DRP.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF167BJI fastq fastq reads ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2968351991 Zhiping Weng, UMass 06207a8ea257995296652c3710c84653 SRA:SRR578714 https://www.encodeproject.org/files/ENCFF167BJI/@@download/ENCFF167BJI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/e9f2a809-6925-43bf-a70e-f2c3a5bfc2ec/ENCFF167BJI.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF437ZUQ bam bam unfiltered alignments hg19 ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF167BJI/, /files/ENCFF807MUK/ 3375891898 ENCODE Processing Pipeline f769751fa464468ea19bf0d3e71dc6e2 https://www.encodeproject.org/files/ENCFF437ZUQ/@@download/ENCFF437ZUQ.bam released s3://encode-public/2016/12/19/244c2d6a-30c1-42a0-8b06-64dd04d4aca2/ENCFF437ZUQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF282TNP bam bam alignments hg19 ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF167BJI/, /files/ENCFF807MUK/ 1694748396 ENCODE Processing Pipeline e65b016bcb8f51defd6eb566139b7bb6 https://www.encodeproject.org/files/ENCFF282TNP/@@download/ENCFF282TNP.bam released s3://encode-public/2016/12/19/f692f211-90e9-48f5-9c0c-35a260d83af9/ENCFF282TNP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF520HKV bam bam unfiltered alignments GRCh38 ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF167BJI/, /files/ENCFF643CGH/ 3390835874 ENCODE Processing Pipeline 8579235742a848e74d4b09801d4e90ae https://www.encodeproject.org/files/ENCFF520HKV/@@download/ENCFF520HKV.bam released s3://encode-public/2016/12/19/c4a64d74-5744-4847-b979-668abd7e925e/ENCFF520HKV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF791PRR bam bam alignments GRCh38 ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF167BJI/, /files/ENCFF643CGH/ 1694184786 ENCODE Processing Pipeline 9d1bf26b40fd9006319941746c624d65 https://www.encodeproject.org/files/ENCFF791PRR/@@download/ENCFF791PRR.bam released s3://encode-public/2016/12/19/9af32569-7702-4336-acaf-41643b977092/ENCFF791PRR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF329CXA tagAlign tagAlign alignments hg19 ENCSR674QIU Control ChIP-seq UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 201631140 Anshul Kundaje, Stanford 5318c8daaec7bde2c527091ae5705847 https://www.encodeproject.org/files/ENCFF329CXA/@@download/ENCFF329CXA.tagAlign.gz archived s3://encode-public/2016/02/11/c558a789-09fb-45f5-bc11-9157e6d62fb6/ENCFF329CXA.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF207NLN bam bam unfiltered alignments GRCh38 ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF167BJI/ 3286773260 ENCODE Processing Pipeline 90d05e94b11ff478a5724c171b9d680e https://www.encodeproject.org/files/ENCFF207NLN/@@download/ENCFF207NLN.bam released s3://encode-public/2020/10/09/04138139-132c-43d2-a4ae-092c24345b03/ENCFF207NLN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF869YMB bam bam alignments GRCh38 ENCSR674QIU Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF167BJI/ 1863060831 ENCODE Processing Pipeline 1b00b60e310ed1cafe434a124da29b71 https://www.encodeproject.org/files/ENCFF869YMB/@@download/ENCFF869YMB.bam released s3://encode-public/2020/10/09/5e297c5a-fd56-4008-b9d5-158368ed5f0b/ENCFF869YMB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF889XZY fastq fastq reads ENCSR751LNC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 784242685 Kevin White, UChicago 0da02d345fe062a0044df85fcb80dbd5 https://www.encodeproject.org/files/ENCFF889XZY/@@download/ENCFF889XZY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/23/0380f00d-5c75-45f8-8ae1-2dc4df1f46a3/ENCFF889XZY.fastq.gz ENCFF283GTE bam bam alignments dm3 ENCSR751LNC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF889XZY/ 965042927 Kevin White, UChicago 1d648b651582d26f2dd8fa483fa2cd45 https://www.encodeproject.org/files/ENCFF283GTE/@@download/ENCFF283GTE.bam released s3://encode-public/2017/06/19/caa5e796-24c2-46cf-87c5-49d65b090771/ENCFF283GTE.bam Lab custom dm3 archived ENCFF044WHF bam bam alignments dm6 ENCSR751LNC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF889XZY/ 959931918 Kevin White, UChicago d61f07aab918009a05f2a0ed433dd274 https://www.encodeproject.org/files/ENCFF044WHF/@@download/ENCFF044WHF.bam released s3://encode-public/2017/06/28/6f4948c9-a96f-4b59-a672-7c1779be8558/ENCFF044WHF.bam Lab custom dm6 released ENCFF244TZC bigWig bigWig signal of unique reads dm3 ENCSR751LNC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF283GTE/ 15273122 Kevin White, UChicago 2e6562a81ef3aed5acaf695a771508fa https://www.encodeproject.org/files/ENCFF244TZC/@@download/ENCFF244TZC.bigWig released s3://encode-public/2017/06/29/e310c206-ffee-4557-96c7-eadebc72f011/ENCFF244TZC.bigWig Lab custom dm3 archived ENCFF935RSU bigWig bigWig read-depth normalized signal dm3 ENCSR751LNC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF283GTE/ 15279927 Kevin White, UChicago f5fd1557bedbd4d52dc4c994cf7eed82 https://www.encodeproject.org/files/ENCFF935RSU/@@download/ENCFF935RSU.bigWig released s3://encode-public/2017/06/29/2e97a9bf-c800-4e2c-987d-6bd54aea6105/ENCFF935RSU.bigWig Lab custom dm3 archived ENCFF737MJJ bigWig bigWig read-depth normalized signal dm6 ENCSR751LNC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF044WHF/ 17468701 Kevin White, UChicago bd7a7d8902d7924d5ad6c42cbe2428e8 https://www.encodeproject.org/files/ENCFF737MJJ/@@download/ENCFF737MJJ.bigWig released s3://encode-public/2017/06/30/716c5d4c-660b-4823-b34b-dd43e2312ff3/ENCFF737MJJ.bigWig Lab custom dm6 released ENCFF062DOJ bigWig bigWig signal of unique reads dm6 ENCSR751LNC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF044WHF/ 17445636 Kevin White, UChicago 38597ee37a6c25d80c19597492d61bb7 https://www.encodeproject.org/files/ENCFF062DOJ/@@download/ENCFF062DOJ.bigWig released s3://encode-public/2017/06/30/6fca33c5-8efb-4790-a893-286d4d138d17/ENCFF062DOJ.bigWig Lab custom dm6 released ENCFF522UNC fastq fastq reads ENCSR823XQM Control ChIP-seq /worm-donors/ENCDO648DRA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179257/'], '@type': ['Target', 'Item'], 'name': 'sup-37-celegans', 'label': 'sup-37', '@id': '/targets/sup-37-celegans/', 'title': 'sup-37 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f076789c-8517-4e0e-93c6-9d1d6d35f84f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 664505131 Kevin White, UChicago 422b2d645bf1eecf1531c1f8413fc8f4 https://www.encodeproject.org/files/ENCFF522UNC/@@download/ENCFF522UNC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/85a1e40d-fd9c-429b-bfe8-181fb013b09d/ENCFF522UNC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF573EBJ bam bam alignments ce11 ENCSR823XQM Control ChIP-seq /worm-donors/ENCDO648DRA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179257/'], '@type': ['Target', 'Item'], 'name': 'sup-37-celegans', 'label': 'sup-37', '@id': '/targets/sup-37-celegans/', 'title': 'sup-37 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f076789c-8517-4e0e-93c6-9d1d6d35f84f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF522UNC/, /files/ENCFF586MOL/ 858907907 Kevin White, UChicago 9a022393a5eb2b3189a4a16b88a85b59 https://www.encodeproject.org/files/ENCFF573EBJ/@@download/ENCFF573EBJ.bam released s3://encode-public/2018/03/01/ad44baf1-5ab2-483a-affc-47d1669c59ea/ENCFF573EBJ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF424HAD bigWig bigWig signal of unique reads ce11 ENCSR823XQM Control ChIP-seq /worm-donors/ENCDO648DRA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179257/'], '@type': ['Target', 'Item'], 'name': 'sup-37-celegans', 'label': 'sup-37', '@id': '/targets/sup-37-celegans/', 'title': 'sup-37 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f076789c-8517-4e0e-93c6-9d1d6d35f84f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF573EBJ/ 9959630 Kevin White, UChicago 60eedd26f642e9dd950b010be8b716bf https://www.encodeproject.org/files/ENCFF424HAD/@@download/ENCFF424HAD.bigWig released s3://encode-public/2018/03/01/7a83ca8d-daa9-480c-bb84-26d9cdfd0574/ENCFF424HAD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF182GPZ bigWig bigWig read-depth normalized signal ce11 ENCSR823XQM Control ChIP-seq /worm-donors/ENCDO648DRA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179257/'], '@type': ['Target', 'Item'], 'name': 'sup-37-celegans', 'label': 'sup-37', '@id': '/targets/sup-37-celegans/', 'title': 'sup-37 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f076789c-8517-4e0e-93c6-9d1d6d35f84f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF573EBJ/ 9955420 Kevin White, UChicago eb84d553e63bea2af8d075111aed06ce https://www.encodeproject.org/files/ENCFF182GPZ/@@download/ENCFF182GPZ.bigWig released s3://encode-public/2018/03/01/7199ac3e-33ee-4b3c-8c04-5d6fe6e781e6/ENCFF182GPZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF610AIH fastq fastq reads ENCSR659YGJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 50 single-ended 2442253835 Kevin White, UChicago f945b7d4c18574b7cf60c7432b986128 https://www.encodeproject.org/files/ENCFF610AIH/@@download/ENCFF610AIH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/24/c6dfed0a-c177-4da9-887a-132c27d8496a/ENCFF610AIH.fastq.gz ENCFF451HVT bam bam alignments dm3 ENCSR659YGJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 44 /files/ENCFF610AIH/, /files/ENCFF059UHX/ 1348905608 Kevin White, UChicago 170bc40a2a8b3b3d7c9ae6d5a06c047b https://www.encodeproject.org/files/ENCFF451HVT/@@download/ENCFF451HVT.bam released s3://encode-public/2017/12/15/df65ab10-1dc3-4fa0-a85c-b7c476a3c7bb/ENCFF451HVT.bam Lab custom dm3 archived ENCFF800RTX bam bam alignments dm6 ENCSR659YGJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 44 /files/ENCFF610AIH/, /files/ENCFF479RCH/ 1343454032 Kevin White, UChicago 793b269f2bc49e36fce12757a3adcfc0 https://www.encodeproject.org/files/ENCFF800RTX/@@download/ENCFF800RTX.bam released s3://encode-public/2017/12/19/ff49dd1c-f102-4eec-bfcb-10d84c4d6668/ENCFF800RTX.bam Lab custom dm6 released ENCFF048AXV bigWig bigWig read-depth normalized signal dm3 ENCSR659YGJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF451HVT/ 15607717 Kevin White, UChicago 04fc4c70a68d2bcd6eb0f7f06b93a762 https://www.encodeproject.org/files/ENCFF048AXV/@@download/ENCFF048AXV.bigWig released s3://encode-public/2017/12/19/84fbc70b-0072-4a3c-85d4-0366711750bd/ENCFF048AXV.bigWig Lab custom dm3 archived ENCFF873LUA bigWig bigWig signal of unique reads dm3 ENCSR659YGJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF451HVT/ 15580272 Kevin White, UChicago 53a7da01d569f67e478667602aa14705 https://www.encodeproject.org/files/ENCFF873LUA/@@download/ENCFF873LUA.bigWig released s3://encode-public/2017/12/19/671e4c65-354a-444c-b5de-07e959fe3ff7/ENCFF873LUA.bigWig Lab custom dm3 archived ENCFF618QAP bigWig bigWig read-depth normalized signal dm6 ENCSR659YGJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF800RTX/ 17804785 Kevin White, UChicago f0a834349703a35c1e9ef1c41a167259 https://www.encodeproject.org/files/ENCFF618QAP/@@download/ENCFF618QAP.bigWig released s3://encode-public/2017/12/19/83d54957-16ae-468c-a445-9f2582df10c5/ENCFF618QAP.bigWig Lab custom dm6 released ENCFF653NAC bigWig bigWig signal of unique reads dm6 ENCSR659YGJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF800RTX/ 17769703 Kevin White, UChicago e8dd278de2f5d0b2c9785837d72a56e2 https://www.encodeproject.org/files/ENCFF653NAC/@@download/ENCFF653NAC.bigWig released s3://encode-public/2017/12/19/1108d2cc-a8fa-4a68-9386-30e4b237cf0a/ENCFF653NAC.bigWig Lab custom dm6 released ENCFF845VLI fastq fastq reads ENCSR842BMI Control ChIP-seq /fly-donors/ENCDO484IWD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36227/'], '@type': ['Target', 'Item'], 'name': 'CG13204-dmelanogaster', 'label': 'CG13204', '@id': '/targets/CG13204-dmelanogaster/', 'title': 'CG13204 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f0b37c39-9008-437d-b41c-4ae2fcb90497', 'status': 'released'} dm3 2R 11356925 11379081 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 709028207 Kevin White, UChicago 2534732df453f9f29552697a38653fad https://www.encodeproject.org/files/ENCFF845VLI/@@download/ENCFF845VLI.fastq.gz Illumina HiSeq 4000 /files/ENCFF846ASW/ released s3://encode-public/2018/02/01/7e76a37f-0997-4927-b0dd-486ca0180373/ENCFF845VLI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF400CPJ bam bam alignments dm6 ENCSR842BMI Control ChIP-seq /fly-donors/ENCDO484IWD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36227/'], '@type': ['Target', 'Item'], 'name': 'CG13204-dmelanogaster', 'label': 'CG13204', '@id': '/targets/CG13204-dmelanogaster/', 'title': 'CG13204 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f0b37c39-9008-437d-b41c-4ae2fcb90497', 'status': 'released'} dm3 2R 11356925 11379081 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF845VLI/, /files/ENCFF479RCH/ 923499212 Kevin White, UChicago 7e7053accdbb144bae9d2dde53d3f859 https://www.encodeproject.org/files/ENCFF400CPJ/@@download/ENCFF400CPJ.bam released s3://encode-public/2018/02/02/1efc1c41-f2c9-465d-b761-71655bf0ee8a/ENCFF400CPJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF335AIG bigWig bigWig read-depth normalized signal dm6 ENCSR842BMI Control ChIP-seq /fly-donors/ENCDO484IWD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36227/'], '@type': ['Target', 'Item'], 'name': 'CG13204-dmelanogaster', 'label': 'CG13204', '@id': '/targets/CG13204-dmelanogaster/', 'title': 'CG13204 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f0b37c39-9008-437d-b41c-4ae2fcb90497', 'status': 'released'} dm3 2R 11356925 11379081 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF400CPJ/ 17488071 Kevin White, UChicago 8475a49969ed57e3e48c33c53d040369 https://www.encodeproject.org/files/ENCFF335AIG/@@download/ENCFF335AIG.bigWig released s3://encode-public/2018/02/02/cdfdac96-8210-4845-b31f-617ea51e6f9b/ENCFF335AIG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF173EYH bigWig bigWig signal of unique reads dm6 ENCSR842BMI Control ChIP-seq /fly-donors/ENCDO484IWD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36227/'], '@type': ['Target', 'Item'], 'name': 'CG13204-dmelanogaster', 'label': 'CG13204', '@id': '/targets/CG13204-dmelanogaster/', 'title': 'CG13204 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f0b37c39-9008-437d-b41c-4ae2fcb90497', 'status': 'released'} dm3 2R 11356925 11379081 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF400CPJ/ 17485587 Kevin White, UChicago 0beb7e48b0e15b85f0371ab7b7a84c93 https://www.encodeproject.org/files/ENCFF173EYH/@@download/ENCFF173EYH.bigWig released s3://encode-public/2018/02/02/211c39da-b8c4-4700-858b-effce72dbef2/ENCFF173EYH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF245YBQ fastq fastq reads ENCSR560NYN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 1000249204 Kevin White, UChicago 384856a9002ef0dd170de9f608386e5c https://www.encodeproject.org/files/ENCFF245YBQ/@@download/ENCFF245YBQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/9c14a3f2-cdd8-4449-be9c-f0d50837dad8/ENCFF245YBQ.fastq.gz ENCFF394RFK bam bam alignments dm3 ENCSR560NYN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF245YBQ/ 1208800485 Kevin White, UChicago b0c201231efe347447dc2dc6bef3b358 https://www.encodeproject.org/files/ENCFF394RFK/@@download/ENCFF394RFK.bam released s3://encode-public/2017/06/19/ca4cf7cb-0b83-49be-8fff-16ceea29e915/ENCFF394RFK.bam Lab custom dm3 archived ENCFF999XEI bam bam alignments dm6 ENCSR560NYN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF245YBQ/ 1205853014 Kevin White, UChicago cfadcf326ba3784927634ea7e3666474 https://www.encodeproject.org/files/ENCFF999XEI/@@download/ENCFF999XEI.bam released s3://encode-public/2017/06/28/a1eed667-d31c-4dd9-a781-75412f55f2bc/ENCFF999XEI.bam Lab custom dm6 released ENCFF022QLO bigWig bigWig signal of unique reads dm3 ENCSR560NYN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF394RFK/ 15183738 Kevin White, UChicago ceb5f3e045db6462df560f98017d5cfd https://www.encodeproject.org/files/ENCFF022QLO/@@download/ENCFF022QLO.bigWig released s3://encode-public/2017/06/29/3c4edefd-55fa-416a-9f7a-f9501201b354/ENCFF022QLO.bigWig Lab custom dm3 archived ENCFF355PDA bigWig bigWig read-depth normalized signal dm3 ENCSR560NYN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF394RFK/ 15178089 Kevin White, UChicago e587ee3349dc19469c98151f45e8fe95 https://www.encodeproject.org/files/ENCFF355PDA/@@download/ENCFF355PDA.bigWig released s3://encode-public/2017/06/29/cb6c6c29-7a5b-4508-ac36-4afb9fea9d30/ENCFF355PDA.bigWig Lab custom dm3 archived ENCFF941BES bigWig bigWig read-depth normalized signal dm6 ENCSR560NYN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF999XEI/ 17290066 Kevin White, UChicago ff0bd598a155ed01cb43ea6b4b11351b https://www.encodeproject.org/files/ENCFF941BES/@@download/ENCFF941BES.bigWig released s3://encode-public/2017/06/30/edb124a8-21d2-4e9c-b2b6-6ef5db3a7826/ENCFF941BES.bigWig Lab custom dm6 released ENCFF546QHK bigWig bigWig signal of unique reads dm6 ENCSR560NYN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF999XEI/ 17283522 Kevin White, UChicago 158f2a385c1e8598a5c40f09edf1f344 https://www.encodeproject.org/files/ENCFF546QHK/@@download/ENCFF546QHK.bigWig released s3://encode-public/2017/06/30/2ef85053-ee5d-4ba4-bd3f-bfee89aded0e/ENCFF546QHK.bigWig Lab custom dm6 released ENCFF821JDA fastq fastq reads ENCSR529PRD Control ChIP-seq /fly-donors/ENCDO647KXS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37412/'], '@type': ['Target', 'Item'], 'name': 'CG9437-dmelanogaster', 'label': 'CG9437', '@id': '/targets/CG9437-dmelanogaster/', 'title': 'CG9437 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '004c73db-4fa5-4769-917d-91b075b6854a', 'status': 'released'} dm3 2R 21167222 21187003 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 630679078 Kevin White, UChicago d11eaa4d6fa915c5e6b3466c5da64dc0 https://www.encodeproject.org/files/ENCFF821JDA/@@download/ENCFF821JDA.fastq.gz Illumina HiSeq 4000 /files/ENCFF828JDY/ released s3://encode-public/2018/02/01/4e49198b-071d-4af1-a269-b6a975039916/ENCFF821JDA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF035MZF bam bam alignments dm6 ENCSR529PRD Control ChIP-seq /fly-donors/ENCDO647KXS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37412/'], '@type': ['Target', 'Item'], 'name': 'CG9437-dmelanogaster', 'label': 'CG9437', '@id': '/targets/CG9437-dmelanogaster/', 'title': 'CG9437 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '004c73db-4fa5-4769-917d-91b075b6854a', 'status': 'released'} dm3 2R 21167222 21187003 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF821JDA/, /files/ENCFF479RCH/ 836280123 Kevin White, UChicago bfc064184bd600b2e6ba06680b9e880e https://www.encodeproject.org/files/ENCFF035MZF/@@download/ENCFF035MZF.bam released s3://encode-public/2018/02/02/87f0d951-f98a-46b1-8fbb-d446fa8e6c0b/ENCFF035MZF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF201QJX bigWig bigWig signal of unique reads dm6 ENCSR529PRD Control ChIP-seq /fly-donors/ENCDO647KXS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37412/'], '@type': ['Target', 'Item'], 'name': 'CG9437-dmelanogaster', 'label': 'CG9437', '@id': '/targets/CG9437-dmelanogaster/', 'title': 'CG9437 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '004c73db-4fa5-4769-917d-91b075b6854a', 'status': 'released'} dm3 2R 21167222 21187003 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF035MZF/ 17533692 Kevin White, UChicago e737917efb651f5c0853b3d38b7a78a6 https://www.encodeproject.org/files/ENCFF201QJX/@@download/ENCFF201QJX.bigWig released s3://encode-public/2018/02/02/d561ba42-4e4f-4cd0-801d-371a40da3c0a/ENCFF201QJX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF237WCO bigWig bigWig read-depth normalized signal dm6 ENCSR529PRD Control ChIP-seq /fly-donors/ENCDO647KXS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37412/'], '@type': ['Target', 'Item'], 'name': 'CG9437-dmelanogaster', 'label': 'CG9437', '@id': '/targets/CG9437-dmelanogaster/', 'title': 'CG9437 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '004c73db-4fa5-4769-917d-91b075b6854a', 'status': 'released'} dm3 2R 21167222 21187003 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF035MZF/ 17535112 Kevin White, UChicago 725f53e6ae2be1092fa27e8e2a699cdd https://www.encodeproject.org/files/ENCFF237WCO/@@download/ENCFF237WCO.bigWig released s3://encode-public/2018/02/02/631c5ceb-18a7-4298-95ff-0e39fd963f29/ENCFF237WCO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF635MIX fastq fastq reads ENCSR333ZYI Control ChIP-seq /fly-donors/ENCDO608BID/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36461/'], '@type': ['Target', 'Item'], 'name': 'Dp-dmelanogaster', 'label': 'Dp', '@id': '/targets/Dp-dmelanogaster/', 'title': 'Dp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6fe21cf-7a5c-4799-b822-a09913e8ef15', 'status': 'released'} dm3 2R 13216567 13234186 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 607303085 Kevin White, UChicago c428e998a9d171b3170a6b3347e0b513 https://www.encodeproject.org/files/ENCFF635MIX/@@download/ENCFF635MIX.fastq.gz Illumina HiSeq 4000 /files/ENCFF719YMU/ released s3://encode-public/2018/02/01/fe3625da-dea0-4b2e-8989-48d4c44f9674/ENCFF635MIX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF126DPW bam bam alignments dm6 ENCSR333ZYI Control ChIP-seq /fly-donors/ENCDO608BID/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36461/'], '@type': ['Target', 'Item'], 'name': 'Dp-dmelanogaster', 'label': 'Dp', '@id': '/targets/Dp-dmelanogaster/', 'title': 'Dp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6fe21cf-7a5c-4799-b822-a09913e8ef15', 'status': 'released'} dm3 2R 13216567 13234186 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF635MIX/, /files/ENCFF479RCH/ 813840215 Kevin White, UChicago ce7c0a71b76f2ea527e87c8df30d5db8 https://www.encodeproject.org/files/ENCFF126DPW/@@download/ENCFF126DPW.bam released s3://encode-public/2018/02/02/576fe460-999a-483b-9771-7f37abca4cf3/ENCFF126DPW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF954FZP bigWig bigWig signal of unique reads dm6 ENCSR333ZYI Control ChIP-seq /fly-donors/ENCDO608BID/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36461/'], '@type': ['Target', 'Item'], 'name': 'Dp-dmelanogaster', 'label': 'Dp', '@id': '/targets/Dp-dmelanogaster/', 'title': 'Dp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6fe21cf-7a5c-4799-b822-a09913e8ef15', 'status': 'released'} dm3 2R 13216567 13234186 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF126DPW/ 17536988 Kevin White, UChicago 092f34afca78839b85f656f76465601c https://www.encodeproject.org/files/ENCFF954FZP/@@download/ENCFF954FZP.bigWig released s3://encode-public/2018/02/02/a1e6ce16-dcd5-4ee4-8c47-aaf9245a7aa9/ENCFF954FZP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF342NDU bigWig bigWig read-depth normalized signal dm6 ENCSR333ZYI Control ChIP-seq /fly-donors/ENCDO608BID/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36461/'], '@type': ['Target', 'Item'], 'name': 'Dp-dmelanogaster', 'label': 'Dp', '@id': '/targets/Dp-dmelanogaster/', 'title': 'Dp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6fe21cf-7a5c-4799-b822-a09913e8ef15', 'status': 'released'} dm3 2R 13216567 13234186 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF126DPW/ 17580448 Kevin White, UChicago af7352fc1319677e1e5ca6909cd2c601 https://www.encodeproject.org/files/ENCFF342NDU/@@download/ENCFF342NDU.bigWig released s3://encode-public/2018/02/02/8c3d3930-a352-41fa-8392-ea5e572708cd/ENCFF342NDU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF434SPH fastq fastq reads ENCSR346XJA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-79'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3087/'], '@type': ['Target', 'Item'], 'name': 'HHEX-human', 'label': 'HHEX', '@id': '/targets/HHEX-human/', 'title': 'HHEX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dfa49931-b7a5-48dc-a8b4-e18eb70c81d4', 'status': 'released'} DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 910387450 Richard Myers, HAIB aae20b149484d09c493483dcfd83ba46 SRA:SRR5338628 https://www.encodeproject.org/files/ENCFF434SPH/@@download/ENCFF434SPH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/39882c01-6ac4-4e7e-8f76-f3d1053cd3d0/ENCFF434SPH.fastq.gz ENCFF023YTY bam bam alignments hg19 ENCSR346XJA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-79'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3087/'], '@type': ['Target', 'Item'], 'name': 'HHEX-human', 'label': 'HHEX', '@id': '/targets/HHEX-human/', 'title': 'HHEX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dfa49931-b7a5-48dc-a8b4-e18eb70c81d4', 'status': 'released'} DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF434SPH/ 790714061 ENCODE Processing Pipeline e43e3549a8decb9711c1b6a31c4f3d95 https://www.encodeproject.org/files/ENCFF023YTY/@@download/ENCFF023YTY.bam released s3://encode-public/2016/01/14/e27c206c-9767-4863-8567-2e20ebeed256/ENCFF023YTY.bam ENCODE3 hg19 archived ENCFF455PHJ bam bam unfiltered alignments GRCh38 ENCSR346XJA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-79'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3087/'], '@type': ['Target', 'Item'], 'name': 'HHEX-human', 'label': 'HHEX', '@id': '/targets/HHEX-human/', 'title': 'HHEX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dfa49931-b7a5-48dc-a8b4-e18eb70c81d4', 'status': 'released'} DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF434SPH/ 1051306248 ENCODE Processing Pipeline 7c815d28f2ff43983d5e19b0ab3257ad https://www.encodeproject.org/files/ENCFF455PHJ/@@download/ENCFF455PHJ.bam released s3://encode-public/2016/05/06/e58efc70-922c-474e-8ed1-d4b1e1554190/ENCFF455PHJ.bam ENCODE3 GRCh38 archived ENCFF582CVJ bam bam alignments GRCh38 ENCSR346XJA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-79'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3087/'], '@type': ['Target', 'Item'], 'name': 'HHEX-human', 'label': 'HHEX', '@id': '/targets/HHEX-human/', 'title': 'HHEX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dfa49931-b7a5-48dc-a8b4-e18eb70c81d4', 'status': 'released'} DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF434SPH/ 790899575 ENCODE Processing Pipeline 9f497eab4abbce436ccf77d176416f7b https://www.encodeproject.org/files/ENCFF582CVJ/@@download/ENCFF582CVJ.bam released s3://encode-public/2016/05/06/0aaf05ed-9324-46b4-a244-97bb5b7073c5/ENCFF582CVJ.bam ENCODE3 GRCh38 archived ENCFF902FAW bam bam unfiltered alignments hg19 ENCSR346XJA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-79'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3087/'], '@type': ['Target', 'Item'], 'name': 'HHEX-human', 'label': 'HHEX', '@id': '/targets/HHEX-human/', 'title': 'HHEX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dfa49931-b7a5-48dc-a8b4-e18eb70c81d4', 'status': 'released'} DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF434SPH/ 1046206570 ENCODE Processing Pipeline 6c8fc7547622a6484e9f8f8de4c4eae0 https://www.encodeproject.org/files/ENCFF902FAW/@@download/ENCFF902FAW.bam released s3://encode-public/2016/09/20/f5c30055-c23b-467b-9b06-df65eedbc2aa/ENCFF902FAW.bam ENCODE3 hg19 archived ENCFF940MAY bam bam alignments GRCh38 ENCSR346XJA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-79'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3087/'], '@type': ['Target', 'Item'], 'name': 'HHEX-human', 'label': 'HHEX', '@id': '/targets/HHEX-human/', 'title': 'HHEX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dfa49931-b7a5-48dc-a8b4-e18eb70c81d4', 'status': 'released'} DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF434SPH/ 819192131 ENCODE Processing Pipeline 0f27c218d5808fd15900b6748d9e6ede https://www.encodeproject.org/files/ENCFF940MAY/@@download/ENCFF940MAY.bam released s3://encode-public/2020/06/06/52460d6e-7e68-4401-a762-53a3d4bfee68/ENCFF940MAY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF093EYW bam bam unfiltered alignments GRCh38 ENCSR346XJA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-79'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3087/'], '@type': ['Target', 'Item'], 'name': 'HHEX-human', 'label': 'HHEX', '@id': '/targets/HHEX-human/', 'title': 'HHEX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dfa49931-b7a5-48dc-a8b4-e18eb70c81d4', 'status': 'released'} DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF434SPH/ 1052996457 ENCODE Processing Pipeline 595387ed15eba99688a605231b3ec7e5 https://www.encodeproject.org/files/ENCFF093EYW/@@download/ENCFF093EYW.bam released s3://encode-public/2020/06/06/421490ae-bbac-49d2-a2e2-45a1fd1df6f5/ENCFF093EYW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF143TLT bam bam alignments ce10 ENCSR095MXI Control ChIP-seq /worm-donors/ENCDO320VPM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2019-01-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF350ETV/, /files/ENCFF987UMF/ 1194558282 Kevin White, UChicago 5ddc03d0b4c3615da1a935aff19619fc https://www.encodeproject.org/files/ENCFF143TLT/@@download/ENCFF143TLT.bam released s3://encode-public/2015/08/19/27b1a136-b567-44d8-b05c-d83c9e4a4b95/ENCFF143TLT.bam Lab custom ce10 archived ENCFF728XAK bigWig bigWig signal of unique reads ce10 ENCSR095MXI Control ChIP-seq /worm-donors/ENCDO320VPM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2019-01-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF143TLT/ 9981584 Kevin White, UChicago 1ff7baee364918be5a053e004bb64066 https://www.encodeproject.org/files/ENCFF728XAK/@@download/ENCFF728XAK.bigWig released s3://encode-public/2015/10/02/29b7848b-ce5a-4169-8496-fa2b8e2ac21a/ENCFF728XAK.bigWig Lab custom ce10 archived ENCFF171YZO bigWig bigWig read-depth normalized signal ce10 ENCSR095MXI Control ChIP-seq /worm-donors/ENCDO320VPM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2019-01-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF143TLT/ 10010487 Kevin White, UChicago e35d47c30572329aee393129f6f07e91 https://www.encodeproject.org/files/ENCFF171YZO/@@download/ENCFF171YZO.bigWig released s3://encode-public/2015/10/02/cae9fd7e-dca7-48a9-aca1-cb6950cab8ae/ENCFF171YZO.bigWig Lab custom ce10 archived ENCFF185XOS bigWig bigWig signal of unique reads ce11 ENCSR095MXI Control ChIP-seq /worm-donors/ENCDO320VPM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2019-01-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF036KJI/ 9980339 Kevin White, UChicago 4f772d403f012650ec4ad086eec76807 https://www.encodeproject.org/files/ENCFF185XOS/@@download/ENCFF185XOS.bigWig released s3://encode-public/2016/02/03/bd6fdda8-37e1-4c11-85cb-43611b9c6c58/ENCFF185XOS.bigWig Lab custom ce11 released ENCFF286VOK bigWig bigWig read-depth normalized signal ce11 ENCSR095MXI Control ChIP-seq /worm-donors/ENCDO320VPM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2019-01-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF036KJI/ 10003011 Kevin White, UChicago 4dc8a57cc63c6212a755254237e54385 https://www.encodeproject.org/files/ENCFF286VOK/@@download/ENCFF286VOK.bigWig released s3://encode-public/2016/02/03/52cf9a40-3d6e-436a-b2e7-82ca809709e1/ENCFF286VOK.bigWig Lab custom ce11 released ENCFF036KJI bam bam alignments ce11 ENCSR095MXI Control ChIP-seq /worm-donors/ENCDO320VPM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2019-01-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF350ETV/, /files/ENCFF586MOL/ 1195568751 Kevin White, UChicago c2903ff4cbbd5efae1d48396e0d4c585 https://www.encodeproject.org/files/ENCFF036KJI/@@download/ENCFF036KJI.bam released s3://encode-public/2016/01/19/7a1a00c8-f181-47af-a3ed-d67af16c3630/ENCFF036KJI.bam Lab custom ce11 released ENCFF350ETV fastq fastq reads ENCSR095MXI Control ChIP-seq /worm-donors/ENCDO320VPM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2019-01-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 874642695 Kevin White, UChicago 88fe1406366b633ee4d3a2fecf3c8278 https://www.encodeproject.org/files/ENCFF350ETV/@@download/ENCFF350ETV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/08/24/98f121ad-1319-4791-bed6-7835c35d2906/ENCFF350ETV.fastq.gz ENCFF714HAD bam bam unfiltered alignments hg19 ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF002BGD/, /files/ENCFF807MUK/ 1391898252 ENCODE Processing Pipeline b94b008da0199e716fbb7fc5c98cf67f https://www.encodeproject.org/files/ENCFF714HAD/@@download/ENCFF714HAD.bam released s3://encode-public/2018/02/22/6a940eff-9695-4b07-85ed-9bde403cd3b2/ENCFF714HAD.bam ENCODE3 hg19 archived ENCFF002BGD fastq fastq reads ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 single-ended 1292865126 Richard Myers, HAIB 501b7debd6ba8980b45d7474b61ac06d SRA:SRR5339440 https://www.encodeproject.org/files/ENCFF002BGD/@@download/ENCFF002BGD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/04/04/38ac6a43-0d73-4f55-947a-8b458a5ee538/ENCFF002BGD.fastq.gz ENCFF524UOI bam bam unfiltered alignments GRCh38-minimal ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF002BGD/, /files/ENCFF454YOX/ 1395748196 J. Michael Cherry, Stanford 07082a92a98be1e48f0fc43e04200175 https://www.encodeproject.org/files/ENCFF524UOI/@@download/ENCFF524UOI.bam archived s3://encode-public/2014/12/12/9062fc4e-d850-4234-b4d1-043b0b66eb6e/ENCFF524UOI.bam ENCFF419TYN bam bam alignments hg19 ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF002BGD/, /files/ENCFF807MUK/ 1080308437 ENCODE Processing Pipeline cf74200ac4fc8da092f896ee61102932 https://www.encodeproject.org/files/ENCFF419TYN/@@download/ENCFF419TYN.bam archived s3://encode-public/2015/10/28/a8aafeec-768c-4f59-8e6b-113e5d6dd299/ENCFF419TYN.bam ENCODE3 hg19 archived ENCFF677MSU bam bam unfiltered alignments GRCh38 ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF002BGD/, /files/ENCFF643CGH/ 1396048019 ENCODE Processing Pipeline c6c1eb5af08d4e5f7f71bacc50028422 https://www.encodeproject.org/files/ENCFF677MSU/@@download/ENCFF677MSU.bam released s3://encode-public/2016/05/06/3699ea9f-1954-4b58-a261-9b094e1f5720/ENCFF677MSU.bam ENCODE3 GRCh38 archived ENCFF113QYJ bam bam alignments GRCh38 ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF002BGD/, /files/ENCFF643CGH/ 1080351243 ENCODE Processing Pipeline e3ad8700c02a32942fa5d9bab5cd3e21 https://www.encodeproject.org/files/ENCFF113QYJ/@@download/ENCFF113QYJ.bam released s3://encode-public/2016/05/06/b0c69e84-363c-49be-97e7-82f1e9551986/ENCFF113QYJ.bam ENCODE3 GRCh38 archived ENCFF632RLI bam bam alignments hg19 ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF002BGD/, /files/ENCFF807MUK/ 1080308466 ENCODE Processing Pipeline ca5aeb99aa731776320c05a22d78ed22 https://www.encodeproject.org/files/ENCFF632RLI/@@download/ENCFF632RLI.bam released s3://encode-public/2017/03/06/7036e36d-5056-4279-a4e2-0629983aa45c/ENCFF632RLI.bam ENCODE3 hg19 archived ENCFF159DIX bam bam alignments GRCh38 ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF110MCL/, /files/ENCFF002BGD/ 1134090296 ENCODE Processing Pipeline 0c7b0ce3672d100abd5e105e0fcafcd2 https://www.encodeproject.org/files/ENCFF159DIX/@@download/ENCFF159DIX.bam released s3://encode-public/2020/06/06/5523ee8a-9cf2-481e-9adb-25724fec6e9a/ENCFF159DIX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF404CTW bam bam unfiltered alignments GRCh38 ENCSR855LCA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 9 9_1 50 /files/ENCFF110MCL/, /files/ENCFF002BGD/ 1382656653 ENCODE Processing Pipeline bfe780c0f7324d54de3b9d32a4bacf00 https://www.encodeproject.org/files/ENCFF404CTW/@@download/ENCFF404CTW.bam released s3://encode-public/2020/06/06/94c33197-1954-4352-b5f4-1b0829cf6ba8/ENCFF404CTW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF291VOE fastq fastq reads ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2693807250 Bing Ren, UCSD 243545cb0713a1aac7789fa632f337d3 SRA:SRR3653192 https://www.encodeproject.org/files/ENCFF291VOE/@@download/ENCFF291VOE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/855c5d35-3ca3-4d03-92fb-0a351c9de393/ENCFF291VOE.fastq.gz inconsistent platforms ENCFF661YTO fastq fastq reads ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 3634351239 Bing Ren, UCSD 1617038f6fda159131129834f8d692b2 SRA:SRR3653191 https://www.encodeproject.org/files/ENCFF661YTO/@@download/ENCFF661YTO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/8083354b-1ee2-49a0-825c-0568203fe9e4/ENCFF661YTO.fastq.gz inconsistent platforms ENCFF792GEI bam bam alignments mm10-minimal ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF661YTO/ 2811089497 ENCODE Processing Pipeline 30ef045bcbb6f1cb28dc35f4c9e182ac https://www.encodeproject.org/files/ENCFF792GEI/@@download/ENCFF792GEI.bam archived s3://encode-public/2015/10/31/481f8976-fc9e-4130-bb36-118faad5fb45/ENCFF792GEI.bam inconsistent platforms ENCFF002TFZ bam bam alignments mm10-minimal ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF291VOE/, /files/ENCFF806TVZ/ 2073430918 ENCODE Processing Pipeline 43843bece32d6d14cb138b2dab631c10 https://www.encodeproject.org/files/ENCFF002TFZ/@@download/ENCFF002TFZ.bam archived s3://encode-public/2015/10/31/637881c2-e426-413b-a473-7bd3e4182573/ENCFF002TFZ.bam inconsistent platforms ENCFF379ZGJ bam bam unfiltered alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF661YTO/ 4339330839 ENCODE Processing Pipeline b612d6efe553611c2a575ed638d8b0ef https://www.encodeproject.org/files/ENCFF379ZGJ/@@download/ENCFF379ZGJ.bam released s3://encode-public/2016/05/20/31446331-5f4f-410c-b32a-0d8b8800aa77/ENCFF379ZGJ.bam ENCODE3 mm10 archived inconsistent platforms ENCFF880SQD bam bam alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF661YTO/ 2810411214 ENCODE Processing Pipeline b3e3921420c1be6def09a502d40f22d6 https://www.encodeproject.org/files/ENCFF880SQD/@@download/ENCFF880SQD.bam released s3://encode-public/2016/05/20/48653a83-676e-4725-baad-30f6c6d54ac8/ENCFF880SQD.bam ENCODE3 mm10 archived inconsistent platforms ENCFF293HIQ fastq fastq reads ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 212133161 Bing Ren, UCSD 971804fd87507744c768556b291fb850 SRA:SRR3653194 https://www.encodeproject.org/files/ENCFF293HIQ/@@download/ENCFF293HIQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/e444eb45-8417-49b1-b02b-7cf8dd92195e/ENCFF293HIQ.fastq.gz inconsistent platforms ENCFF572OIN fastq fastq reads ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 324851029 Bing Ren, UCSD f448e7f4e5ea86f6ac86fb0a1eec8215 SRA:SRR3653195 https://www.encodeproject.org/files/ENCFF572OIN/@@download/ENCFF572OIN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/1e67eb3a-704a-42b2-9a93-00c82a38ad9f/ENCFF572OIN.fastq.gz inconsistent platforms ENCFF901RYX bam bam alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF291VOE/, /files/ENCFF293HIQ/, /files/ENCFF572OIN/ 2640005554 ENCODE Processing Pipeline 0631a74e1efa1477c01b53d9e3debe51 https://www.encodeproject.org/files/ENCFF901RYX/@@download/ENCFF901RYX.bam released s3://encode-public/2016/07/18/f75a5c5f-688d-4919-a473-7379d1497690/ENCFF901RYX.bam ENCODE3 mm10 archived inconsistent platforms ENCFF669UJV bam bam unfiltered alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF291VOE/, /files/ENCFF293HIQ/, /files/ENCFF572OIN/ 4068120307 ENCODE Processing Pipeline baa39178e0f1a4b3f37253f52a15e50e https://www.encodeproject.org/files/ENCFF669UJV/@@download/ENCFF669UJV.bam released s3://encode-public/2016/07/18/11684902-433e-415b-903b-e136efbb6a39/ENCFF669UJV.bam ENCODE3 mm10 archived inconsistent platforms ENCFF408RPR bam bam alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF661YTO/, /files/ENCFF309GLL/ 2935659594 ENCODE Processing Pipeline a0ba2f972ea11bb68de0d1f72ec2e394 https://www.encodeproject.org/files/ENCFF408RPR/@@download/ENCFF408RPR.bam released s3://encode-public/2020/10/07/6a985411-d08e-4d72-b93e-57a4b60dbbd4/ENCFF408RPR.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF631HAW bam bam unfiltered alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF291VOE/, /files/ENCFF293HIQ/, /files/ENCFF572OIN/, /files/ENCFF309GLL/ 3971025391 ENCODE Processing Pipeline a8411a33da718e5afa3cabeec716e2a0 https://www.encodeproject.org/files/ENCFF631HAW/@@download/ENCFF631HAW.bam released s3://encode-public/2020/10/07/fbc76a8e-4106-4926-ab13-8a9c0eadf297/ENCFF631HAW.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF543SES bam bam unfiltered alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF661YTO/, /files/ENCFF309GLL/ 4261508468 ENCODE Processing Pipeline 42f0e7f14fa7c0308576be5e4ce0d8b1 https://www.encodeproject.org/files/ENCFF543SES/@@download/ENCFF543SES.bam released s3://encode-public/2020/10/07/b5869b43-548e-48c2-9719-7407755cc498/ENCFF543SES.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF339SSC bam bam alignments mm10 ENCSR880HDV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF291VOE/, /files/ENCFF293HIQ/, /files/ENCFF572OIN/, /files/ENCFF309GLL/ 2720383343 ENCODE Processing Pipeline 6db47c4fa16e0045e51eadfc62c8923e https://www.encodeproject.org/files/ENCFF339SSC/@@download/ENCFF339SSC.bam released s3://encode-public/2020/10/07/8593f2cb-1f45-4206-bee5-43405029ba2c/ENCFF339SSC.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF490ZJJ fastq fastq reads ENCSR461LST Control ChIP-seq /fly-donors/ENCDO096QHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35677/'], '@type': ['Target', 'Item'], 'name': 'CG1621-dmelanogaster', 'label': 'CG1621', '@id': '/targets/CG1621-dmelanogaster/', 'title': 'CG1621 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '92c43642-fd98-408d-92a4-5d1d01d04c72', 'status': 'released'} dm3 2R 3378340 3380084 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 721447251 Kevin White, UChicago 110c0aef4f17600a36c96c4c9deb94c1 https://www.encodeproject.org/files/ENCFF490ZJJ/@@download/ENCFF490ZJJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF332DMC/ released s3://encode-public/2018/05/29/31c75b57-23d4-407c-b4cc-a7420db92bba/ENCFF490ZJJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF174GFT fastq fastq reads ENCSR461LST Control ChIP-seq /fly-donors/ENCDO096QHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35677/'], '@type': ['Target', 'Item'], 'name': 'CG1621-dmelanogaster', 'label': 'CG1621', '@id': '/targets/CG1621-dmelanogaster/', 'title': 'CG1621 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '92c43642-fd98-408d-92a4-5d1d01d04c72', 'status': 'released'} dm3 2R 3378340 3380084 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 645860461 Kevin White, UChicago b448163b02ab729702ef1d39715f1f1a https://www.encodeproject.org/files/ENCFF174GFT/@@download/ENCFF174GFT.fastq.gz Illumina HiSeq 4000 /files/ENCFF332DMC/ released s3://encode-public/2018/05/29/9f7780b6-093a-477a-9221-72c8c00bbdf9/ENCFF174GFT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF936CSQ bam bam alignments dm6 ENCSR461LST Control ChIP-seq /fly-donors/ENCDO096QHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35677/'], '@type': ['Target', 'Item'], 'name': 'CG1621-dmelanogaster', 'label': 'CG1621', '@id': '/targets/CG1621-dmelanogaster/', 'title': 'CG1621 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '92c43642-fd98-408d-92a4-5d1d01d04c72', 'status': 'released'} dm3 2R 3378340 3380084 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF174GFT/, /files/ENCFF490ZJJ/, /files/ENCFF479RCH/ 1797810272 Kevin White, UChicago 12af317bb137e2e62a35d222dc006069 https://www.encodeproject.org/files/ENCFF936CSQ/@@download/ENCFF936CSQ.bam released s3://encode-public/2018/05/29/fe06e067-ad89-4ec2-853a-efaea80f7bac/ENCFF936CSQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF623RZP bigWig bigWig read-depth normalized signal dm6 ENCSR461LST Control ChIP-seq /fly-donors/ENCDO096QHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35677/'], '@type': ['Target', 'Item'], 'name': 'CG1621-dmelanogaster', 'label': 'CG1621', '@id': '/targets/CG1621-dmelanogaster/', 'title': 'CG1621 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '92c43642-fd98-408d-92a4-5d1d01d04c72', 'status': 'released'} dm3 2R 3378340 3380084 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF936CSQ/ 17695620 Kevin White, UChicago 44fbcf3dbb7035924501f3b615cec475 https://www.encodeproject.org/files/ENCFF623RZP/@@download/ENCFF623RZP.bigWig released s3://encode-public/2018/05/30/0ffc6a9c-6935-4630-b21f-d3186c339f6e/ENCFF623RZP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF350TAM bigWig bigWig signal of unique reads dm6 ENCSR461LST Control ChIP-seq /fly-donors/ENCDO096QHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35677/'], '@type': ['Target', 'Item'], 'name': 'CG1621-dmelanogaster', 'label': 'CG1621', '@id': '/targets/CG1621-dmelanogaster/', 'title': 'CG1621 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '92c43642-fd98-408d-92a4-5d1d01d04c72', 'status': 'released'} dm3 2R 3378340 3380084 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF936CSQ/ 17766213 Kevin White, UChicago 4b4373d97e2b344fcbc832b4e02073cc https://www.encodeproject.org/files/ENCFF350TAM/@@download/ENCFF350TAM.bigWig released s3://encode-public/2018/05/30/e69ae8bd-fbb7-48da-b255-9dc5773a618d/ENCFF350TAM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF785DJC fastq fastq reads ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 45835343 Kevin White, UChicago 378ab39f3490155f1f1879f423a14ec1 https://www.encodeproject.org/files/ENCFF785DJC/@@download/ENCFF785DJC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/28/bd6513a4-e0f9-4c66-ad47-99d19ffd3b5d/ENCFF785DJC.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF234OWA fastq fastq reads ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 424430572 Kevin White, UChicago c383c5c4bc7ca660cd511551d1d8a85d https://www.encodeproject.org/files/ENCFF234OWA/@@download/ENCFF234OWA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/28/123a41e1-c699-4971-94e5-1c9765562be7/ENCFF234OWA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF041HTG fastq fastq reads ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 155498 Kevin White, UChicago c44a1c5926592ce664e599d7f459801f https://www.encodeproject.org/files/ENCFF041HTG/@@download/ENCFF041HTG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/30/b55f4a4d-9ff5-4a31-a1b6-4cfe13794cda/ENCFF041HTG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF972XHJ bam bam alignments ce10 ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF785DJC/, /files/ENCFF234OWA/, /files/ENCFF041HTG/ 680767177 Kevin White, UChicago 91b318a90c0d097c612eaeffb4a2827c https://www.encodeproject.org/files/ENCFF972XHJ/@@download/ENCFF972XHJ.bam released s3://encode-public/2015/08/19/7ec0d064-e914-48f8-bfe4-756452641267/ENCFF972XHJ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF929CNQ bigWig bigWig signal of unique reads ce10 ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF972XHJ/ 9982930 Kevin White, UChicago cbe6e7b42d074772980cc7b11a2567fd https://www.encodeproject.org/files/ENCFF929CNQ/@@download/ENCFF929CNQ.bigWig released s3://encode-public/2015/10/02/a29adeae-8e3b-4e5a-af46-f734b4b68377/ENCFF929CNQ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF818EEE bigWig bigWig read-depth normalized signal ce10 ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF972XHJ/ 9988724 Kevin White, UChicago fde636ec9298ce71621adfd4a922c38b https://www.encodeproject.org/files/ENCFF818EEE/@@download/ENCFF818EEE.bigWig released s3://encode-public/2015/10/02/47a2cd0e-ecf7-4ee3-9f68-895b83fa72e7/ENCFF818EEE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF858WFD bam bam alignments ce11 ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF785DJC/, /files/ENCFF234OWA/, /files/ENCFF041HTG/ 681338508 Kevin White, UChicago eec1ad5f2c1a717153583e7d9cc8b8b6 https://www.encodeproject.org/files/ENCFF858WFD/@@download/ENCFF858WFD.bam released s3://encode-public/2016/01/20/8b4d8c16-0060-43e3-8414-9d654c514237/ENCFF858WFD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF063TNO bigWig bigWig signal of unique reads ce11 ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF858WFD/ 9979505 Kevin White, UChicago 60d3d69947b712c34f7bd9ad89c75a9b https://www.encodeproject.org/files/ENCFF063TNO/@@download/ENCFF063TNO.bigWig released s3://encode-public/2016/02/03/20732567-5deb-487a-8a78-0d356ff0b5cb/ENCFF063TNO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF912HAP bigWig bigWig read-depth normalized signal ce11 ENCSR892EIQ Control ChIP-seq /worm-donors/ENCDO484RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF858WFD/ 9986440 Kevin White, UChicago 45f53af7f80db6d1fc6c13e73eb6b55e https://www.encodeproject.org/files/ENCFF912HAP/@@download/ENCFF912HAP.bigWig released s3://encode-public/2016/02/03/d4b51a9e-9ac7-42a1-8cd8-ad0b478338e5/ENCFF912HAP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF531VJO bam bam unfiltered alignments hg19 ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BFW/ 2271940096 ENCODE Processing Pipeline 4ccf3bf1e13aa5b5a61f26d7b07061d8 https://www.encodeproject.org/files/ENCFF531VJO/@@download/ENCFF531VJO.bam released s3://encode-public/2018/02/22/68bb0237-8cb3-4bd5-bc3f-51b46d561fc4/ENCFF531VJO.bam ENCODE3 hg19 archived ENCFF002BFW fastq fastq reads ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 single-ended 2182506275 Richard Myers, HAIB 489d601f4d7a36404928c4f4d3e60d0c SRA:SRR5338630 https://www.encodeproject.org/files/ENCFF002BFW/@@download/ENCFF002BFW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/04/04/58931fac-9f1f-4424-9eb1-765b3f8c8ef3/ENCFF002BFW.fastq.gz ENCFF428FQC bam bam unfiltered alignments GRCh38-minimal ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF752DYX/, /files/ENCFF002BFW/ 2276071984 J. Michael Cherry, Stanford caf762dac1e28bd1734947fb5c61c048 https://www.encodeproject.org/files/ENCFF428FQC/@@download/ENCFF428FQC.bam archived s3://encode-public/2014/12/12/7aedf356-1f5e-4d21-ac00-afa462610d52/ENCFF428FQC.bam ENCFF859ZYD bam bam alignments hg19 ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BFW/ 1545101844 ENCODE Processing Pipeline 08896a12c6a409a12a7ea757a9632377 https://www.encodeproject.org/files/ENCFF859ZYD/@@download/ENCFF859ZYD.bam archived s3://encode-public/2015/10/28/f3fdac78-56da-4834-9af6-bb3a3b6eeb63/ENCFF859ZYD.bam ENCODE3 hg19 archived ENCFF429RAN bam bam unfiltered alignments GRCh38 ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF002BFW/ 2262421852 ENCODE Processing Pipeline 0a9f522471741f06fbebbca0f124c261 https://www.encodeproject.org/files/ENCFF429RAN/@@download/ENCFF429RAN.bam released s3://encode-public/2016/05/06/22f4ac3f-b9a2-4143-b34c-8af3779a104b/ENCFF429RAN.bam ENCODE3 GRCh38 archived ENCFF154WIU bam bam alignments GRCh38 ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF002BFW/ 1552705969 ENCODE Processing Pipeline 55199d0b13cdd1361ee0e5b45cc890a5 https://www.encodeproject.org/files/ENCFF154WIU/@@download/ENCFF154WIU.bam released s3://encode-public/2016/05/06/9da795a8-fc84-4993-af4e-7fccbfec1d6b/ENCFF154WIU.bam ENCODE3 GRCh38 archived ENCFF943IIV bam bam alignments hg19 ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BFW/ 1545101873 ENCODE Processing Pipeline 4cdb8239e97e53a329b737a8bb96cb96 https://www.encodeproject.org/files/ENCFF943IIV/@@download/ENCFF943IIV.bam released s3://encode-public/2016/11/16/21642fd6-abc8-4572-988e-8bf3ff57cde5/ENCFF943IIV.bam ENCODE3 hg19 archived ENCFF455CKZ bam bam unfiltered alignments GRCh38 ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF002BFW/, /files/ENCFF110MCL/ 2250161635 ENCODE Processing Pipeline 7f105996f2087c32f4d743a5921668fd https://www.encodeproject.org/files/ENCFF455CKZ/@@download/ENCFF455CKZ.bam released s3://encode-public/2020/11/05/a81bbd4e-0977-41a3-86d2-f1f83c1c77f4/ENCFF455CKZ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF028PUX bam bam alignments GRCh38 ENCSR360XQV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF002BFW/, /files/ENCFF110MCL/ 1652488917 ENCODE Processing Pipeline 61e737c92f8ada5e175d7f4d3320f1a4 https://www.encodeproject.org/files/ENCFF028PUX/@@download/ENCFF028PUX.bam released s3://encode-public/2020/11/05/00c3b490-d9d4-4433-9087-7c8a9ad6b500/ENCFF028PUX.bam ENCODE4 v1.6.1 GRCh38 released ENCFF816PXZ bam bam unfiltered alignments hg19 ENCSR814KDE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF610IKU/ 1003597430 ENCODE Processing Pipeline 3b40169f034ce1ef0ea863065bd9d335 https://www.encodeproject.org/files/ENCFF816PXZ/@@download/ENCFF816PXZ.bam released s3://encode-public/2018/02/22/baa836f4-4ce7-4552-b9f9-615cdd8239ef/ENCFF816PXZ.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF610IKU fastq fastq reads ENCSR814KDE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 901981580 Kevin White, UChicago 3fa4e9f8b1161ebedcec8f4717f0c384 SRA:SRR6213970 https://www.encodeproject.org/files/ENCFF610IKU/@@download/ENCFF610IKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF330MJC/ released s3://encode-public/2016/03/14/06887a4d-8597-4660-85f7-e5a25ce0abec/ENCFF610IKU.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF513LAW bam bam alignments hg19 ENCSR814KDE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF610IKU/ 804645392 ENCODE Processing Pipeline d9b00df67ecf8bf812935915ce8f85dd https://www.encodeproject.org/files/ENCFF513LAW/@@download/ENCFF513LAW.bam released s3://encode-public/2016/04/23/b3391f56-868d-4510-8b11-9e168d58be76/ENCFF513LAW.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF435XNC bam bam unfiltered alignments GRCh38 ENCSR814KDE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF610IKU/ 1008295860 ENCODE Processing Pipeline 24cff3e987e069f657c163c13132da3a https://www.encodeproject.org/files/ENCFF435XNC/@@download/ENCFF435XNC.bam released s3://encode-public/2016/05/06/1ebfba89-f76a-45b8-a7b4-fc47eb2c017b/ENCFF435XNC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF604HFX bam bam alignments GRCh38 ENCSR814KDE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF610IKU/ 804278706 ENCODE Processing Pipeline c84e2c1ca86f8f561557267b006aee90 https://www.encodeproject.org/files/ENCFF604HFX/@@download/ENCFF604HFX.bam released s3://encode-public/2016/05/06/fb0991a2-260d-4e89-8db6-773c93f13ecc/ENCFF604HFX.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF307YJK bam bam unfiltered alignments GRCh38 ENCSR814KDE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF610IKU/, /files/ENCFF110MCL/ 1005311430 ENCODE Processing Pipeline fa38e1421b9a73d5ff02c7d5ca254416 https://www.encodeproject.org/files/ENCFF307YJK/@@download/ENCFF307YJK.bam released s3://encode-public/2020/10/27/90935da0-30e8-4b52-94f0-9e6383c64bc8/ENCFF307YJK.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF980DSU bam bam alignments GRCh38 ENCSR814KDE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF610IKU/, /files/ENCFF110MCL/ 854399268 ENCODE Processing Pipeline 73ed26dfec3e2c580b9eb0c9dfdb9b90 https://www.encodeproject.org/files/ENCFF980DSU/@@download/ENCFF980DSU.bam released s3://encode-public/2020/10/27/e9d1a529-08ce-4faa-8511-6af0c19039ea/ENCFF980DSU.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF731NMN bam bam unfiltered alignments GRCh38 ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF472NJP/, /files/ENCFF639FFG/, /files/ENCFF759HIS/, /files/ENCFF112IVN/ 7649531653 ENCODE Processing Pipeline d763e2a5b2174a38cf0815f4ff78a064 https://www.encodeproject.org/files/ENCFF731NMN/@@download/ENCFF731NMN.bam released s3://encode-public/2020/09/20/dec679d0-84f5-4943-8ef0-444244649d49/ENCFF731NMN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF112IVN fastq fastq reads ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_2 76 single-ended 995135636 Bradley Bernstein, Broad df2e1f48ec00318e0e7e2f132ce6ef8a SRA:SRR14103062 https://www.encodeproject.org/files/ENCFF112IVN/@@download/ENCFF112IVN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/85791dfd-3c92-4aac-ae6b-83a4ad64ab19/ENCFF112IVN.fastq.gz ENCFF759HIS fastq fastq reads ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_2 76 single-ended 1043387427 Bradley Bernstein, Broad a0a4caf9f396a5f003df2879f5af02c2 SRA:SRR14103063 https://www.encodeproject.org/files/ENCFF759HIS/@@download/ENCFF759HIS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/3caae6f7-7afe-42b4-a250-7807958d4ef6/ENCFF759HIS.fastq.gz ENCFF893BFO bam bam unfiltered alignments hg19 ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF472NJP/, /files/ENCFF807MUK/, /files/ENCFF759HIS/, /files/ENCFF639FFG/, /files/ENCFF112IVN/ 7574170846 ENCODE Processing Pipeline 68c54b6e8204f1330ba23e5d15827234 https://www.encodeproject.org/files/ENCFF893BFO/@@download/ENCFF893BFO.bam released s3://encode-public/2019/01/31/26c179eb-77cc-4c28-ada2-77a486dadd79/ENCFF893BFO.bam ENCODE3 hg19 archived ENCFF317AFP bam bam alignments hg19 ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF472NJP/, /files/ENCFF807MUK/, /files/ENCFF759HIS/, /files/ENCFF639FFG/, /files/ENCFF112IVN/ 6036232852 ENCODE Processing Pipeline 1c1ae796bf1a86148a96389fe78c4e78 https://www.encodeproject.org/files/ENCFF317AFP/@@download/ENCFF317AFP.bam released s3://encode-public/2019/01/31/2c09e69b-dbdd-45c2-9703-97f56ac375ce/ENCFF317AFP.bam ENCODE3 hg19 archived ENCFF577HWA bam bam unfiltered alignments GRCh38 ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF472NJP/, /files/ENCFF759HIS/, /files/ENCFF639FFG/, /files/ENCFF643CGH/, /files/ENCFF112IVN/ 7588464763 ENCODE Processing Pipeline 5b6d2cd5078359a039f274c52c9dd59f https://www.encodeproject.org/files/ENCFF577HWA/@@download/ENCFF577HWA.bam released s3://encode-public/2019/01/31/1c29d146-00fa-4714-a974-f80ff0c81a69/ENCFF577HWA.bam ENCODE3 GRCh38 archived ENCFF190OUS bam bam alignments GRCh38 ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF472NJP/, /files/ENCFF759HIS/, /files/ENCFF639FFG/, /files/ENCFF643CGH/, /files/ENCFF112IVN/ 6046631209 ENCODE Processing Pipeline a62509adc86a156a753a6bebeab66285 https://www.encodeproject.org/files/ENCFF190OUS/@@download/ENCFF190OUS.bam released s3://encode-public/2019/01/31/e4843839-6600-4565-bbe3-465fd00d4bb7/ENCFF190OUS.bam ENCODE3 GRCh38 archived ENCFF639FFG fastq fastq reads ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1 76 single-ended 3153579215 Bradley Bernstein, Broad 0768fbadcc727dea2c05a04037f22217 SRA:SRR14103064 https://www.encodeproject.org/files/ENCFF639FFG/@@download/ENCFF639FFG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/b9d970c6-eec2-4330-a1a2-902ab7e3521d/ENCFF639FFG.fastq.gz ENCFF472NJP fastq fastq reads ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1 76 single-ended 3114897243 Bradley Bernstein, Broad 605acc9c4150de28c340b40b7f36246b SRA:SRR14103065 https://www.encodeproject.org/files/ENCFF472NJP/@@download/ENCFF472NJP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/062fc615-7dd7-4961-864e-6922772457fd/ENCFF472NJP.fastq.gz ENCFF141TEG bam bam alignments GRCh38 ENCSR010HMS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2019-02-01 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF472NJP/, /files/ENCFF639FFG/, /files/ENCFF759HIS/, /files/ENCFF112IVN/ 6153970919 ENCODE Processing Pipeline 63d610f985e8dd20b817cb3b4cb261a1 https://www.encodeproject.org/files/ENCFF141TEG/@@download/ENCFF141TEG.bam released s3://encode-public/2020/09/20/f6df16de-a0bc-4ecc-8e90-12e71518b84a/ENCFF141TEG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF252PYF fastq fastq reads ENCSR655HDE Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1105432266 Richard Myers, HAIB 1c497c4ba4646fd98f7100f80e9d6a3a SRA:SRR5339079 https://www.encodeproject.org/files/ENCFF252PYF/@@download/ENCFF252PYF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/f80b0381-97cc-4c76-bf5c-ac9b0fcc40ed/ENCFF252PYF.fastq.gz ENCFF956QBZ bam bam alignments hg19 ENCSR655HDE Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF252PYF/ 998123000 ENCODE Processing Pipeline 7d15d948dd4530dc2df99da426309806 https://www.encodeproject.org/files/ENCFF956QBZ/@@download/ENCFF956QBZ.bam released s3://encode-public/2016/01/14/45ebb69b-3786-4124-90e7-03eee942fc35/ENCFF956QBZ.bam ENCODE3 hg19 archived ENCFF308CYL bam bam unfiltered alignments GRCh38 ENCSR655HDE Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF252PYF/ 1279598001 ENCODE Processing Pipeline dc36ffd922df894094f3d38c054b9d7f https://www.encodeproject.org/files/ENCFF308CYL/@@download/ENCFF308CYL.bam released s3://encode-public/2016/05/06/124adb8b-8586-403a-bc90-5348f6a2e1bd/ENCFF308CYL.bam ENCODE3 GRCh38 archived ENCFF341IVK bam bam alignments GRCh38 ENCSR655HDE Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF252PYF/ 998092394 ENCODE Processing Pipeline f51894ce2ac2a2a4886dd94d203518ae https://www.encodeproject.org/files/ENCFF341IVK/@@download/ENCFF341IVK.bam released s3://encode-public/2016/05/06/5b56e02f-9afe-423d-bb36-a821ceccb74f/ENCFF341IVK.bam ENCODE3 GRCh38 archived ENCFF595RJR bam bam unfiltered alignments hg19 ENCSR655HDE Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF252PYF/ 1277024040 ENCODE Processing Pipeline 32b99cf389bab5e3d517c775137ab29a https://www.encodeproject.org/files/ENCFF595RJR/@@download/ENCFF595RJR.bam released s3://encode-public/2017/03/10/27ef57e3-e63c-4947-8c13-738dd27ab4fb/ENCFF595RJR.bam ENCODE3 hg19 archived ENCFF624WTL bam bam unfiltered alignments GRCh38 ENCSR655HDE Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF252PYF/ 1277904346 ENCODE Processing Pipeline ab4c1eef63c3cd20b4169e5d8e7d1d05 https://www.encodeproject.org/files/ENCFF624WTL/@@download/ENCFF624WTL.bam released s3://encode-public/2020/06/25/e6f9cede-9163-41f7-a3dd-72e568fa3d3b/ENCFF624WTL.bam ENCODE4 GRCh38 released ENCFF369PJN bam bam alignments GRCh38 ENCSR655HDE Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF252PYF/ 1032788781 ENCODE Processing Pipeline a1359418da868664a48304b76be0379b https://www.encodeproject.org/files/ENCFF369PJN/@@download/ENCFF369PJN.bam released s3://encode-public/2020/06/25/d56f0723-8c6d-4170-976b-f02aa6a385c0/ENCFF369PJN.bam ENCODE4 GRCh38 released ENCFF229ZQW fastq fastq reads ENCSR503YWW Control ChIP-seq /worm-donors/ENCDO035MAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 173276795 Kevin White, UChicago a25f0eb30898cb7369dc4081e4320a3f https://www.encodeproject.org/files/ENCFF229ZQW/@@download/ENCFF229ZQW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF133ALD/ released s3://encode-public/2015/07/30/cc2bcb38-100c-48b0-a5e8-dbb36d868565/ENCFF229ZQW.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF583NFV bam bam alignments ce10 ENCSR503YWW Control ChIP-seq /worm-donors/ENCDO035MAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF229ZQW/ 268036789 Kevin White, UChicago 4a089bea9b30a10d84ce4a5b6956f94f https://www.encodeproject.org/files/ENCFF583NFV/@@download/ENCFF583NFV.bam released s3://encode-public/2015/08/19/091f8a06-70dd-4859-a262-a45912e9f193/ENCFF583NFV.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF294GYT bigWig bigWig read-depth normalized signal ce10 ENCSR503YWW Control ChIP-seq /worm-donors/ENCDO035MAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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ChIP-seq /worm-donors/ENCDO035MAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF583NFV/ 10057477 Kevin White, UChicago b223a36b2d567fbb588d5a19a513bebe https://www.encodeproject.org/files/ENCFF879RSI/@@download/ENCFF879RSI.bigWig released s3://encode-public/2015/10/02/66af9569-bf4c-48ca-903b-325b962f0115/ENCFF879RSI.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF805JRC bam bam alignments ce11 ENCSR503YWW Control ChIP-seq /worm-donors/ENCDO035MAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF229ZQW/ 268425008 Kevin White, UChicago 98cf452b8d0819e34b9219d022329d9f https://www.encodeproject.org/files/ENCFF805JRC/@@download/ENCFF805JRC.bam released s3://encode-public/2016/01/20/0777f695-5437-4434-a5f2-87f4765e7d67/ENCFF805JRC.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF628SAM bigWig bigWig signal of unique reads ce11 ENCSR503YWW Control ChIP-seq /worm-donors/ENCDO035MAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF805JRC/ 10055152 Kevin White, UChicago 72f68c80c3f9fd4d4492a8a28ee5aa54 https://www.encodeproject.org/files/ENCFF628SAM/@@download/ENCFF628SAM.bigWig released s3://encode-public/2016/02/03/c84ada7f-15e6-4a41-8814-1e0fefa00ca9/ENCFF628SAM.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF815MPP bigWig bigWig read-depth normalized signal ce11 ENCSR503YWW Control ChIP-seq /worm-donors/ENCDO035MAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF805JRC/ 10032447 Kevin White, UChicago 00c5011ed50c529344d5ba83972ebe0d https://www.encodeproject.org/files/ENCFF815MPP/@@download/ENCFF815MPP.bigWig released s3://encode-public/2016/02/03/92d62346-765e-42a2-8692-9fd65c5f5097/ENCFF815MPP.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF077BCR fastq fastq reads ENCSR906OSH Control ChIP-seq /human-donors/ENCDO736MLL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1878680369 Bradley Bernstein, Broad d3be3ec147415559d5205cb122718612 SRA:SRR13804493 https://www.encodeproject.org/files/ENCFF077BCR/@@download/ENCFF077BCR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/cdac69e8-98c7-49a0-a87a-2181715aeca6/ENCFF077BCR.fastq.gz ENCFF463SGK fastq fastq reads ENCSR906OSH Control ChIP-seq /human-donors/ENCDO736MLL/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1896991544 Bradley Bernstein, Broad 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2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF700OYN/ 1898412409 Michael Snyder, Stanford 71ab32dfdbc0f2954e5567022c9d1bee SRA:SRR13803790 https://www.encodeproject.org/files/ENCFF487NAF/@@download/ENCFF487NAF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/8393258d-422a-4a15-a16b-bff104611e14/ENCFF487NAF.fastq.gz ENCFF940LWU bam bam unfiltered alignments GRCh38 ENCSR000JGO Control ChIP-seq /human-donors/ENCDO227AAA/ CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF700OYN/, /files/ENCFF487NAF/, /files/ENCFF110MCL/ 3752010242 ENCODE Processing Pipeline 9eddde2c76084a50af541ef0e6f54f18 https://www.encodeproject.org/files/ENCFF940LWU/@@download/ENCFF940LWU.bam released s3://encode-public/2020/08/20/6a900c38-2cf1-4b03-89f2-d59c4287bfe5/ENCFF940LWU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF361FZC bam bam alignments GRCh38 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characterization ENCFF679NOJ fastq fastq reads ENCSR744FDJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 861862159 Kevin White, UChicago 376def05f95506a4de9d624da3f49749 SRA:SRR14103361 https://www.encodeproject.org/files/ENCFF679NOJ/@@download/ENCFF679NOJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF067NSO/ released s3://encode-public/2016/03/15/20547b22-5eb9-4806-89e3-d5076efc4e6c/ENCFF679NOJ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF830KJE bam bam alignments hg19 ENCSR744FDJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 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insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF067NSO/, /files/ENCFF643CGH/, /files/ENCFF679NOJ/ 1464026105 ENCODE Processing Pipeline c24ce0371f8b180cda43e4f2533f3f74 https://www.encodeproject.org/files/ENCFF362FTX/@@download/ENCFF362FTX.bam released s3://encode-public/2016/05/06/3fe4940e-cbe4-4220-a5c0-205d3ffb0c5a/ENCFF362FTX.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF017JQT bam bam unfiltered alignments GRCh38 ENCSR744FDJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF067NSO/, /files/ENCFF110MCL/, 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s3://encode-public/2016/05/02/47839352-4dbd-49f6-bdf5-566d454c260f/ENCFF091MOP.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF484LKZ fastq fastq reads ENCSR110LEG Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 749621564 Zhiping Weng, UMass 8dfbd7c67dc4a9c8a23d4deb0d4aaf20 SRA:SRR037639 https://www.encodeproject.org/files/ENCFF484LKZ/@@download/ENCFF484LKZ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/31311d8a-bd5d-4023-ab9a-9b769f6e8439/ENCFF484LKZ.fastq.gz low read depth, low read length ENCFF528QYK bam bam alignments GRCh38 ENCSR110LEG Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF484LKZ/ 616969998 ENCODE Processing Pipeline eb2133eebda8ccc1387cc8cf351e2f87 https://www.encodeproject.org/files/ENCFF528QYK/@@download/ENCFF528QYK.bam released 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https://www.encodeproject.org/files/ENCFF759GHJ/@@download/ENCFF759GHJ.bam released s3://encode-public/2016/12/19/37a23a07-d41c-4bbf-8168-f95634c614d5/ENCFF759GHJ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF726NAG bam bam unfiltered alignments GRCh38 ENCSR110LEG Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF484LKZ/, /files/ENCFF643CGH/ 916235489 ENCODE Processing Pipeline 3fb935101efa2d8c5af466e47073b698 https://www.encodeproject.org/files/ENCFF726NAG/@@download/ENCFF726NAG.bam released s3://encode-public/2016/12/19/d8bfb00b-9c40-4088-a6cc-e22621d683d3/ENCFF726NAG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF530HCQ bam bam alignments GRCh38 ENCSR110LEG Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF484LKZ/, /files/ENCFF643CGH/ 570247180 ENCODE Processing Pipeline 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/files/ENCFF190ZGD/ 7154730744 Michael Snyder, Stanford b183e6f2a9bcfe4321128d7b1b45ea29 SRA:SRR13804538 https://www.encodeproject.org/files/ENCFF164WQW/@@download/ENCFF164WQW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/7cd19608-2720-42af-8501-8e3037585f19/ENCFF164WQW.fastq.gz mild to moderate bottlenecking ENCFF190ZGD fastq fastq reads ENCSR269OND Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF164WQW/ 9371438311 Michael Snyder, Stanford 7b634995c1b6edd5d89e836d847a66b7 SRA:SRR13804538 https://www.encodeproject.org/files/ENCFF190ZGD/@@download/ENCFF190ZGD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/11/4472e3b3-e1c2-4df4-9741-db9365b6fb84/ENCFF190ZGD.fastq.gz mild to moderate bottlenecking ENCFF585QHK bam bam unfiltered alignments GRCh38 ENCSR269OND Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF164WQW/, /files/ENCFF190ZGD/ 15476442691 ENCODE Processing Pipeline 9c24019c4dc43012496a3e223255b68c https://www.encodeproject.org/files/ENCFF585QHK/@@download/ENCFF585QHK.bam released s3://encode-public/2020/08/20/d430b0d6-e4f6-4c9b-814d-b0f07e27237f/ENCFF585QHK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF579DGX bam bam alignments GRCh38 ENCSR269OND Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF164WQW/, /files/ENCFF190ZGD/ 10619092939 ENCODE Processing Pipeline bba480bc3e99223242afe2991262ff14 https://www.encodeproject.org/files/ENCFF579DGX/@@download/ENCFF579DGX.bam released s3://encode-public/2020/08/20/4a2a3e77-3e3e-4e82-b9f8-b2a85cb9e11b/ENCFF579DGX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF845SCG bam bam redacted alignments GRCh38 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 75 /files/ENCFF535HOG/, /files/ENCFF643CGH/ 230590752 ENCODE Processing Pipeline b9f9fb9f5ef5d36ce30e0a2d8b5e0ac3 https://www.encodeproject.org/files/ENCFF845SCG/@@download/ENCFF845SCG.bam released s3://encode-public/2017/11/09/2e8c4ae8-5cf7-4b48-a619-41ad46177ed8/ENCFF845SCG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF938ARZ bam bam redacted unfiltered alignments GRCh38 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 75 /files/ENCFF535HOG/, /files/ENCFF643CGH/ 325558199 ENCODE Processing Pipeline f53299d792891b508aad71d59e9869dc https://www.encodeproject.org/files/ENCFF938ARZ/@@download/ENCFF938ARZ.bam released s3://encode-public/2017/11/09/d97424a6-4b0c-45db-9c77-4b1f8cb42d07/ENCFF938ARZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF166ISM bam bam redacted unfiltered alignments GRCh38 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF414CJD/ 415310479 ENCODE Processing Pipeline ea51cb3f6ccd4975dc92b86b1c772771 https://www.encodeproject.org/files/ENCFF166ISM/@@download/ENCFF166ISM.bam released s3://encode-public/2017/11/09/8ea5be4b-ed0c-4f81-be73-9e882e8e89bb/ENCFF166ISM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF182BXL bam bam redacted alignments GRCh38 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF414CJD/ 257262713 ENCODE Processing Pipeline cda431f7b8a6b126c01ff4cd7ca109c0 https://www.encodeproject.org/files/ENCFF182BXL/@@download/ENCFF182BXL.bam released s3://encode-public/2017/11/09/3f593d3d-65bb-4219-b557-7ccbd65620f6/ENCFF182BXL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF459RWE bam bam redacted unfiltered alignments hg19 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF414CJD/ 406780782 ENCODE Processing Pipeline e42d1144ea813392ccdf731305eebe2a https://www.encodeproject.org/files/ENCFF459RWE/@@download/ENCFF459RWE.bam released s3://encode-public/2018/01/20/e5420559-122a-4f7e-b13b-37d9cdd7c5f3/ENCFF459RWE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF609FQP bam bam redacted unfiltered alignments hg19 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 75 /files/ENCFF535HOG/, /files/ENCFF807MUK/ 319121704 ENCODE Processing Pipeline 47de329451879273f564a2c3fdd8e5be https://www.encodeproject.org/files/ENCFF609FQP/@@download/ENCFF609FQP.bam released s3://encode-public/2018/01/20/6c08fe18-0c9c-4b71-b99e-59be5b971823/ENCFF609FQP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF470BVJ bam bam redacted alignments hg19 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 75 /files/ENCFF535HOG/, /files/ENCFF807MUK/ 229967119 ENCODE Processing Pipeline 99eea688cbd56879d97e8f2cda51f133 https://www.encodeproject.org/files/ENCFF470BVJ/@@download/ENCFF470BVJ.bam released s3://encode-public/2018/01/20/87031daa-f8e4-45f3-9b22-819b3daf2d8c/ENCFF470BVJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF065HFR bam bam redacted alignments hg19 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF414CJD/ 256789959 ENCODE Processing Pipeline f4e3337176bbc656db3c53260c5079a1 https://www.encodeproject.org/files/ENCFF065HFR/@@download/ENCFF065HFR.bam released s3://encode-public/2018/01/20/f3b6f8db-5715-451e-8c60-23ba58f36e3a/ENCFF065HFR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF022VMB bam bam redacted alignments GRCh38 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF101AYS/, /files/ENCFF110MCL/ 1538434203 ENCODE Processing Pipeline a45928a6b999bd1145c86443f19cc184 https://www.encodeproject.org/files/ENCFF022VMB/@@download/ENCFF022VMB.bam released s3://encode-public/2021/01/28/2fb55c79-60e5-4827-8f77-8430098c985a/ENCFF022VMB.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF802CDJ bam bam redacted alignments GRCh38 ENCSR813QNE Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 75 /files/ENCFF110MCL/, /files/ENCFF099UDM/ 1421852699 ENCODE Processing Pipeline 289729d79a0f7fe11ff6970021b5efe5 https://www.encodeproject.org/files/ENCFF802CDJ/@@download/ENCFF802CDJ.bam released s3://encode-public/2021/01/28/90d4429a-ab96-4607-93ba-d4254ac15f53/ENCFF802CDJ.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF987DRF fastq fastq reads ENCSR661GOR Control ChIP-seq /worm-donors/ENCDO940NOA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565873/'], '@type': ['Target', 'Item'], 'name': 'lsy-12-celegans', 'label': 'lsy-12', '@id': '/targets/lsy-12-celegans/', 'title': 'lsy-12 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '96e75b96-e7ab-4aad-be50-5d26be1f85c1', 'status': 'released'} ce11 V 9842309 9881673 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 687413856 Kevin White, UChicago 5d6f7162b1e60a070212a7aac75a1914 https://www.encodeproject.org/files/ENCFF987DRF/@@download/ENCFF987DRF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/d6c523f5-cb68-4638-b9ec-d644b064e3ab/ENCFF987DRF.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF846LQP bam bam alignments ce10 ENCSR661GOR Control ChIP-seq /worm-donors/ENCDO940NOA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565873/'], '@type': ['Target', 'Item'], 'name': 'lsy-12-celegans', 'label': 'lsy-12', '@id': '/targets/lsy-12-celegans/', 'title': 'lsy-12 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '96e75b96-e7ab-4aad-be50-5d26be1f85c1', 'status': 'released'} ce11 V 9842309 9881673 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987DRF/, /files/ENCFF987UMF/ 858734971 Kevin White, UChicago 454a720fa3c747593928873213cc02f4 https://www.encodeproject.org/files/ENCFF846LQP/@@download/ENCFF846LQP.bam released s3://encode-public/2016/10/06/6f0c62fe-0531-4a08-a4c8-c0d5194e7e91/ENCFF846LQP.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF127EKJ bam bam alignments ce11 ENCSR661GOR Control ChIP-seq /worm-donors/ENCDO940NOA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565873/'], '@type': ['Target', 'Item'], 'name': 'lsy-12-celegans', 'label': 'lsy-12', '@id': '/targets/lsy-12-celegans/', 'title': 'lsy-12 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '96e75b96-e7ab-4aad-be50-5d26be1f85c1', 'status': 'released'} ce11 V 9842309 9881673 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987DRF/, /files/ENCFF586MOL/ 859408917 Kevin White, UChicago 747fad915f3dcc9ede3fbbe643d6b9e4 https://www.encodeproject.org/files/ENCFF127EKJ/@@download/ENCFF127EKJ.bam released s3://encode-public/2016/10/06/70c96725-1c4d-48fc-a77c-fe0742831bb9/ENCFF127EKJ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF727XWP bigWig bigWig signal of unique reads ce10 ENCSR661GOR Control ChIP-seq /worm-donors/ENCDO940NOA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565873/'], '@type': ['Target', 'Item'], 'name': 'lsy-12-celegans', 'label': 'lsy-12', '@id': '/targets/lsy-12-celegans/', 'title': 'lsy-12 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '96e75b96-e7ab-4aad-be50-5d26be1f85c1', 'status': 'released'} ce11 V 9842309 9881673 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF846LQP/ 9955597 Kevin White, UChicago d6a2e701f1ff52fd7423616757369b97 https://www.encodeproject.org/files/ENCFF727XWP/@@download/ENCFF727XWP.bigWig released s3://encode-public/2016/10/06/d6a2643e-d5b9-4a27-96fa-413c572a9067/ENCFF727XWP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF338GYM bigWig bigWig read-depth normalized signal ce10 ENCSR661GOR Control ChIP-seq /worm-donors/ENCDO940NOA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565873/'], '@type': ['Target', 'Item'], 'name': 'lsy-12-celegans', 'label': 'lsy-12', '@id': '/targets/lsy-12-celegans/', 'title': 'lsy-12 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '96e75b96-e7ab-4aad-be50-5d26be1f85c1', 'status': 'released'} ce11 V 9842309 9881673 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF846LQP/ 9956387 Kevin White, UChicago f192ad34a2d8680de019a67bc8309525 https://www.encodeproject.org/files/ENCFF338GYM/@@download/ENCFF338GYM.bigWig released s3://encode-public/2016/10/06/4c9dfc0b-b75c-47e5-abd1-2255d9625f2c/ENCFF338GYM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF373GES bigWig bigWig read-depth normalized signal ce11 ENCSR661GOR Control ChIP-seq /worm-donors/ENCDO940NOA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565873/'], '@type': ['Target', 'Item'], 'name': 'lsy-12-celegans', 'label': 'lsy-12', '@id': '/targets/lsy-12-celegans/', 'title': 'lsy-12 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '96e75b96-e7ab-4aad-be50-5d26be1f85c1', 'status': 'released'} ce11 V 9842309 9881673 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF127EKJ/ 9956388 Kevin White, UChicago 1daca990ff889c030b85bd1ee629088a https://www.encodeproject.org/files/ENCFF373GES/@@download/ENCFF373GES.bigWig released s3://encode-public/2016/10/06/3de694fc-73fe-46cc-bcd5-62cb54be44e8/ENCFF373GES.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF124GRO bigWig bigWig signal of unique reads ce11 ENCSR661GOR Control ChIP-seq /worm-donors/ENCDO940NOA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565873/'], '@type': ['Target', 'Item'], 'name': 'lsy-12-celegans', 'label': 'lsy-12', '@id': '/targets/lsy-12-celegans/', 'title': 'lsy-12 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '96e75b96-e7ab-4aad-be50-5d26be1f85c1', 'status': 'released'} ce11 V 9842309 9881673 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF127EKJ/ 9955596 Kevin White, UChicago 25aa188236521bf4c2a966abf4c9cb5c https://www.encodeproject.org/files/ENCFF124GRO/@@download/ENCFF124GRO.bigWig released s3://encode-public/2016/10/06/dff592a9-8a45-4579-af3c-3c10db1a1dc3/ENCFF124GRO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF597GVW fastq fastq reads ENCSR303ZWP Control ChIP-seq /fly-donors/ENCDO849QIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34982/'], '@type': ['Target', 'Item'], 'name': 'dac-dmelanogaster', 'label': 'dac', '@id': '/targets/dac-dmelanogaster/', 'title': 'dac (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '58b9aa70-2f8c-40f2-8f61-db899697b197', 'status': 'released'} dm3 2L 16404686 16490786 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 804796842 Kevin White, UChicago c374ef1ff8523687deee35948ec5f4ad https://www.encodeproject.org/files/ENCFF597GVW/@@download/ENCFF597GVW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/9b4a5e8d-9e64-45a9-8e03-dc92a137427f/ENCFF597GVW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF710UNB bam bam alignments dm3 ENCSR303ZWP Control ChIP-seq /fly-donors/ENCDO849QIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34982/'], '@type': ['Target', 'Item'], 'name': 'dac-dmelanogaster', 'label': 'dac', '@id': '/targets/dac-dmelanogaster/', 'title': 'dac (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '58b9aa70-2f8c-40f2-8f61-db899697b197', 'status': 'released'} dm3 2L 16404686 16490786 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF597GVW/, /files/ENCFF059UHX/ 1093275426 Kevin White, UChicago ea318e3864489e46810852721d4ba358 https://www.encodeproject.org/files/ENCFF710UNB/@@download/ENCFF710UNB.bam released s3://encode-public/2016/12/22/a9a2cf6c-3ee5-4319-8319-ac2249aafe6a/ENCFF710UNB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF662QFG bam bam alignments dm6 ENCSR303ZWP Control ChIP-seq /fly-donors/ENCDO849QIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34982/'], '@type': ['Target', 'Item'], 'name': 'dac-dmelanogaster', 'label': 'dac', '@id': '/targets/dac-dmelanogaster/', 'title': 'dac (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '58b9aa70-2f8c-40f2-8f61-db899697b197', 'status': 'released'} dm3 2L 16404686 16490786 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF597GVW/, /files/ENCFF479RCH/ 1090414680 Kevin White, UChicago 7e4bd34a8e6f220c52192b9c2cc77a64 https://www.encodeproject.org/files/ENCFF662QFG/@@download/ENCFF662QFG.bam released s3://encode-public/2016/12/22/6b3ecffd-a3a8-4fd8-bcc0-62899c5c9858/ENCFF662QFG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF489XPV bigWig bigWig signal of unique reads dm6 ENCSR303ZWP Control ChIP-seq /fly-donors/ENCDO849QIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34982/'], '@type': ['Target', 'Item'], 'name': 'dac-dmelanogaster', 'label': 'dac', '@id': '/targets/dac-dmelanogaster/', 'title': 'dac (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '58b9aa70-2f8c-40f2-8f61-db899697b197', 'status': 'released'} dm3 2L 16404686 16490786 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF662QFG/ 17469141 Kevin White, UChicago a495f3b9e5b6810875e09984184bc367 https://www.encodeproject.org/files/ENCFF489XPV/@@download/ENCFF489XPV.bigWig released s3://encode-public/2017/01/04/360b9c92-f937-4cf2-ab42-1ce4c53ec30f/ENCFF489XPV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF741WRT bigWig bigWig signal of unique reads dm3 ENCSR303ZWP Control ChIP-seq /fly-donors/ENCDO849QIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34982/'], '@type': ['Target', 'Item'], 'name': 'dac-dmelanogaster', 'label': 'dac', '@id': '/targets/dac-dmelanogaster/', 'title': 'dac (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '58b9aa70-2f8c-40f2-8f61-db899697b197', 'status': 'released'} dm3 2L 16404686 16490786 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF710UNB/ 15432625 Kevin White, UChicago 7588324ae811b27a94bc3d5e0032599b https://www.encodeproject.org/files/ENCFF741WRT/@@download/ENCFF741WRT.bigWig released s3://encode-public/2017/01/04/21634b46-b0cf-4d8c-b9f4-3095b0652e63/ENCFF741WRT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF182BUR bigWig bigWig read-depth normalized signal dm3 ENCSR303ZWP Control ChIP-seq /fly-donors/ENCDO849QIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34982/'], '@type': ['Target', 'Item'], 'name': 'dac-dmelanogaster', 'label': 'dac', '@id': '/targets/dac-dmelanogaster/', 'title': 'dac (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '58b9aa70-2f8c-40f2-8f61-db899697b197', 'status': 'released'} dm3 2L 16404686 16490786 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF710UNB/ 15480562 Kevin White, UChicago 84b7bc6fe08a138d3af3e29f7a45d2c1 https://www.encodeproject.org/files/ENCFF182BUR/@@download/ENCFF182BUR.bigWig released s3://encode-public/2017/01/04/d25c43ed-4ae4-41e7-a57d-b903452a60b4/ENCFF182BUR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF890OHP bigWig bigWig read-depth normalized signal dm6 ENCSR303ZWP Control ChIP-seq /fly-donors/ENCDO849QIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34982/'], '@type': ['Target', 'Item'], 'name': 'dac-dmelanogaster', 'label': 'dac', '@id': '/targets/dac-dmelanogaster/', 'title': 'dac (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '58b9aa70-2f8c-40f2-8f61-db899697b197', 'status': 'released'} dm3 2L 16404686 16490786 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF662QFG/ 17536581 Kevin White, UChicago e66309e7e80cd7666e37c75f306686f5 https://www.encodeproject.org/files/ENCFF890OHP/@@download/ENCFF890OHP.bigWig released s3://encode-public/2017/01/04/4596ebad-6e04-461f-b8cb-d7d3f1ea46a8/ENCFF890OHP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF434ADM fastq fastq reads ENCSR576KIW Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 303570516 Kevin White, UChicago 8909849b53a66f972634a58583c2bfd1 https://www.encodeproject.org/files/ENCFF434ADM/@@download/ENCFF434ADM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/21/f43203c6-4bbf-44d4-847b-2c33705800d7/ENCFF434ADM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF917SZH bam bam alignments dm3 ENCSR576KIW Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF434ADM/ 369933840 Kevin White, UChicago 978524c02b7048e726b607aa87423158 https://www.encodeproject.org/files/ENCFF917SZH/@@download/ENCFF917SZH.bam released s3://encode-public/2015/10/21/b229c69f-5cc2-407a-87dc-1f41aeaf1138/ENCFF917SZH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF733MSZ bigWig bigWig read-depth normalized signal dm3 ENCSR576KIW Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF917SZH/ 15050941 Kevin White, UChicago 1d6f66a95773db82258a597f33ffbbb3 https://www.encodeproject.org/files/ENCFF733MSZ/@@download/ENCFF733MSZ.bigWig released s3://encode-public/2015/10/21/324fe9c6-3036-48b3-9656-bea6a64c3d28/ENCFF733MSZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF059PCW bigWig bigWig signal of unique reads dm3 ENCSR576KIW Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF917SZH/ 15059194 Kevin White, UChicago 7b618c0fe7f287ac3087c957492327c9 https://www.encodeproject.org/files/ENCFF059PCW/@@download/ENCFF059PCW.bigWig released s3://encode-public/2015/10/21/eeaacd46-8583-4b47-b0d2-55c217cf50c4/ENCFF059PCW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF049UUS bam bam alignments dm6 ENCSR576KIW Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF434ADM/ 366737443 Kevin White, UChicago 5cedb87562bedd6b253dc17c322bd75f https://www.encodeproject.org/files/ENCFF049UUS/@@download/ENCFF049UUS.bam released s3://encode-public/2016/06/24/23b0fc57-9dff-4e9b-bc2f-69b6f962fee5/ENCFF049UUS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF006BST bigWig bigWig read-depth normalized signal dm6 ENCSR576KIW Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF049UUS/ 17105762 Kevin White, UChicago 0af622aa7e4723de7ae7fbaed21d36fa https://www.encodeproject.org/files/ENCFF006BST/@@download/ENCFF006BST.bigWig released s3://encode-public/2016/06/24/de0631ca-cf85-4ab2-bc22-94974ade2183/ENCFF006BST.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF522RLY bigWig bigWig signal of unique reads dm6 ENCSR576KIW Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF049UUS/ 17107412 Kevin White, UChicago 31e00bc20f0451cc1da52ba4fa64ec2a https://www.encodeproject.org/files/ENCFF522RLY/@@download/ENCFF522RLY.bigWig released s3://encode-public/2016/06/24/aebedb79-dee2-4bbb-b9a7-de7528f57d01/ENCFF522RLY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF363QTN bam bam alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF695BNF/ 800996243 ENCODE Processing Pipeline 934f1e0dbf88808cd1ffa1da42d929f9 https://www.encodeproject.org/files/ENCFF363QTN/@@download/ENCFF363QTN.bam released s3://encode-public/2020/09/29/753a7873-d236-434a-a869-ea967fe44c35/ENCFF363QTN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF487GTT bam bam unfiltered alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF695BNF/ 954283248 ENCODE Processing Pipeline 542fdbbb3276b98b5599331df868f20e https://www.encodeproject.org/files/ENCFF487GTT/@@download/ENCFF487GTT.bam released s3://encode-public/2020/09/29/874fa925-c157-4ec3-a1fb-49de202fdd1a/ENCFF487GTT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF894UBN bam bam alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF928FXR/ 704360832 ENCODE Processing Pipeline aa0d4ce750e0d3de1f7954267a898cd6 https://www.encodeproject.org/files/ENCFF894UBN/@@download/ENCFF894UBN.bam released s3://encode-public/2020/09/29/966b7126-6ac1-41d9-9f18-21bf9ff890b2/ENCFF894UBN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF445GRN bam bam alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF786UZX/ 685218824 ENCODE Processing Pipeline 20ccf7200565625ef46c130f92a03221 https://www.encodeproject.org/files/ENCFF445GRN/@@download/ENCFF445GRN.bam released s3://encode-public/2020/09/29/a21559a3-3761-4d7e-b44b-f05e00ee226c/ENCFF445GRN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF201ZQF bam bam unfiltered alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF928FXR/ 832840830 ENCODE Processing Pipeline fda4fa920b48b1be1b1182e6ab7a9ba2 https://www.encodeproject.org/files/ENCFF201ZQF/@@download/ENCFF201ZQF.bam released s3://encode-public/2020/09/29/ed859223-6cf2-43d2-a94a-f9df915f8578/ENCFF201ZQF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF928FXR fastq fastq reads ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 612679550 Tim Reddy, Duke b843447d299ad5b0a5042260d84ace28 SRA:SRR5093407 https://www.encodeproject.org/files/ENCFF928FXR/@@download/ENCFF928FXR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/56d220f4-470a-41c8-a9c0-5b4364f15f3a/ENCFF928FXR.fastq.gz ENCFF786UZX fastq fastq reads ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 625676812 Tim Reddy, Duke fd2ec2015177170289242120de4c7b65 SRA:SRR5093406 https://www.encodeproject.org/files/ENCFF786UZX/@@download/ENCFF786UZX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/ed51b24b-61c8-4f96-93a5-a73b4366f60b/ENCFF786UZX.fastq.gz ENCFF695BNF fastq fastq reads ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 699791041 Tim Reddy, Duke 66457431aaba92dc8d8d118e53ab4c88 SRA:SRR5093408 https://www.encodeproject.org/files/ENCFF695BNF/@@download/ENCFF695BNF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/bf5a4d2b-f612-4b66-a3ba-945c19f96b67/ENCFF695BNF.fastq.gz ENCFF027OCG bam bam alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF928FXR/ 672589778 Tim Reddy, Duke 99013fbb99df74015a8c0683084af754 https://www.encodeproject.org/files/ENCFF027OCG/@@download/ENCFF027OCG.bam released s3://encode-public/2016/05/31/39069098-4ade-41d0-ade7-e6fcae04cac9/ENCFF027OCG.bam Lab custom GRCh38 archived ENCFF219AQO bam bam alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF695BNF/ 759534580 Tim Reddy, Duke da07dce7417e7daf5f922a6cdd6580ad https://www.encodeproject.org/files/ENCFF219AQO/@@download/ENCFF219AQO.bam released s3://encode-public/2016/05/31/e5cf8c52-10f5-4a0f-b364-982fc95c7b94/ENCFF219AQO.bam Lab custom GRCh38 archived ENCFF397JTQ bam bam alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF786UZX/ 654663804 Tim Reddy, Duke a2f49dcff0b0369c794723bd00d9ff69 https://www.encodeproject.org/files/ENCFF397JTQ/@@download/ENCFF397JTQ.bam released s3://encode-public/2016/05/31/031f260c-5048-469a-b72c-197f54509946/ENCFF397JTQ.bam Lab custom GRCh38 archived ENCFF156GJZ bam bam unfiltered alignments GRCh38 ENCSR325PXS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF786UZX/ 831596782 ENCODE Processing Pipeline fda43eb4ef9c9cb130fee7a6d53b65c6 https://www.encodeproject.org/files/ENCFF156GJZ/@@download/ENCFF156GJZ.bam released s3://encode-public/2020/09/29/2b48cd23-5c41-4af2-a0ad-d911ea9cb64f/ENCFF156GJZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF002IJA fastq fastq reads ENCSR723FET Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2021-04-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF444YGW/ 5247573930 Michael Snyder, Stanford f445741c92d4c6a7a29e9818c0999e1c SRA:SRR14637477 https://www.encodeproject.org/files/ENCFF002IJA/@@download/ENCFF002IJA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/9f44d2f9-b94e-41f1-9916-5afe22d9d949/ENCFF002IJA.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF444YGW fastq fastq reads ENCSR723FET Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2021-04-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF002IJA/ 6223468833 Michael Snyder, Stanford c7a02fd9fb8750db73d44980f2a5d5ee SRA:SRR14637477 https://www.encodeproject.org/files/ENCFF444YGW/@@download/ENCFF444YGW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/dfc24c4d-a1d0-4b36-ae04-05347d86d9c8/ENCFF444YGW.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF670USS bam bam unfiltered alignments GRCh38 ENCSR723FET Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2021-04-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF002IJA/, /files/ENCFF110MCL/, /files/ENCFF444YGW/ 9872874176 ENCODE Processing Pipeline baf996ab07b4f51e780f880ba2604e70 https://www.encodeproject.org/files/ENCFF670USS/@@download/ENCFF670USS.bam released s3://encode-public/2020/08/20/d9906fa9-12d2-415a-acd6-d4d19d99f6d3/ENCFF670USS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF988DRF bam bam alignments GRCh38 ENCSR723FET Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2021-04-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF002IJA/, /files/ENCFF110MCL/, /files/ENCFF444YGW/ 4799478007 ENCODE Processing Pipeline 4996f01b1e286bec305f6b6b5c2ffd97 https://www.encodeproject.org/files/ENCFF988DRF/@@download/ENCFF988DRF.bam released s3://encode-public/2020/08/20/931390c6-ee8a-49e6-a78b-3b48126bce17/ENCFF988DRF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF001MXE bam bam alignments mm9 ENCSR000ADH Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 27 /files/ENCFF001MYM/ 539779283 Sherman Weissman, Yale 0e030c2a38ce317817a6067cea669923 https://www.encodeproject.org/files/ENCFF001MXE/@@download/ENCFF001MXE.bam archived s3://encode-public/2010/04/26/9558830f-154f-449f-814b-fd3435417edf/ENCFF001MXE.bam Lab custom mm9 archived low read length ENCFF001MXG bigWig bigWig signal mm9 ENCSR000ADH Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 203006412 Sherman Weissman, Yale a603df9010bde0e6faa37806efa9daf0 https://www.encodeproject.org/files/ENCFF001MXG/@@download/ENCFF001MXG.bigWig archived s3://encode-public/2013/04/18/95befcc1-9f85-415a-8eb5-e0f69756f053/ENCFF001MXG.bigWig Lab custom mm9 archived low read length ENCFF001MYM fastq fastq reads ENCSR000ADH Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 36 single-ended 1822959682 Sherman Weissman, Yale f7acb742cf7e0637878651b2b949aad1 https://www.encodeproject.org/files/ENCFF001MYM/@@download/ENCFF001MYM.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2010/04/26/dd11e1af-affd-47fe-9663-db7f2601c8c0/ENCFF001MYM.fastq.gz low read length ENCFF672FWR bam bam unfiltered alignments mm10 ENCSR000ADH Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MYM/ 2102247367 ENCODE Processing Pipeline 2592a81c273063e394a68a4bacd5fd7c https://www.encodeproject.org/files/ENCFF672FWR/@@download/ENCFF672FWR.bam released s3://encode-public/2016/10/26/825dec97-1088-45ea-96b7-b3e32a78f245/ENCFF672FWR.bam ENCODE3 mm10 archived low read length ENCFF784ZAX bam bam alignments mm10 ENCSR000ADH Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MYM/ 1133923475 ENCODE Processing Pipeline edef23b1dafc78af7f2444378ef46806 https://www.encodeproject.org/files/ENCFF784ZAX/@@download/ENCFF784ZAX.bam released s3://encode-public/2016/10/26/7d4feaae-4e26-4491-a20a-c673f093b271/ENCFF784ZAX.bam ENCODE3 mm10 archived low read length ENCFF820EAQ bam bam unfiltered alignments mm10 ENCSR000ADH Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF001MYM/, /files/ENCFF309GLL/ 2075943789 ENCODE Processing Pipeline c8bd9b06063d845bbbfd27c2ae3790a1 https://www.encodeproject.org/files/ENCFF820EAQ/@@download/ENCFF820EAQ.bam released s3://encode-public/2020/10/12/c5658e77-26c9-49d5-bbeb-79c396127532/ENCFF820EAQ.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF514CHI bam bam alignments mm10 ENCSR000ADH Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF001MYM/, /files/ENCFF309GLL/ 1211129715 ENCODE Processing Pipeline 3f1efd326ffe34343c8d54eeec2ea4cf https://www.encodeproject.org/files/ENCFF514CHI/@@download/ENCFF514CHI.bam released s3://encode-public/2020/10/12/2c4e1182-9877-4906-a867-aba17023d113/ENCFF514CHI.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF685TAR fastq fastq reads ENCSR719RUU Control ChIP-seq /fly-donors/ENCDO838ERE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32817/'], '@type': ['Target', 'Item'], 'name': 'CrebB-dmelanogaster', 'label': 'CrebB', '@id': '/targets/CrebB-dmelanogaster/', 'title': 'CrebB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8130fb12-c349-48e5-9181-71adeca43a21', 'status': 'released'} dm3 X 18359804 18382619 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1021996783 Kevin White, UChicago a38facdc2d91c43d48acafa0ab703e62 https://www.encodeproject.org/files/ENCFF685TAR/@@download/ENCFF685TAR.fastq.gz Illumina HiSeq 4000 /files/ENCFF706PHJ/ released s3://encode-public/2018/05/29/2c6946f4-7c42-4df2-88c2-a41b73b54cb1/ENCFF685TAR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF541UIT bam bam alignments dm6 ENCSR719RUU Control ChIP-seq /fly-donors/ENCDO838ERE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32817/'], '@type': ['Target', 'Item'], 'name': 'CrebB-dmelanogaster', 'label': 'CrebB', '@id': '/targets/CrebB-dmelanogaster/', 'title': 'CrebB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8130fb12-c349-48e5-9181-71adeca43a21', 'status': 'released'} dm3 X 18359804 18382619 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF685TAR/, /files/ENCFF479RCH/ 1339489536 Kevin White, UChicago 0022b98c042b5c01381d95f101b42e7f https://www.encodeproject.org/files/ENCFF541UIT/@@download/ENCFF541UIT.bam released s3://encode-public/2018/05/29/4b2e9d2f-e082-4c31-b6ad-c9cc3df1edb4/ENCFF541UIT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF636GJA bigWig bigWig read-depth normalized signal dm6 ENCSR719RUU Control ChIP-seq /fly-donors/ENCDO838ERE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32817/'], '@type': ['Target', 'Item'], 'name': 'CrebB-dmelanogaster', 'label': 'CrebB', '@id': '/targets/CrebB-dmelanogaster/', 'title': 'CrebB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8130fb12-c349-48e5-9181-71adeca43a21', 'status': 'released'} dm3 X 18359804 18382619 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF541UIT/ 17677099 Kevin White, UChicago c750510c8f1ffe29526325adde174b1a https://www.encodeproject.org/files/ENCFF636GJA/@@download/ENCFF636GJA.bigWig released s3://encode-public/2018/05/30/de29281a-0b93-4850-a2cb-c1c041943de2/ENCFF636GJA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002PAP bigWig bigWig signal of unique reads dm6 ENCSR719RUU Control ChIP-seq /fly-donors/ENCDO838ERE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32817/'], '@type': ['Target', 'Item'], 'name': 'CrebB-dmelanogaster', 'label': 'CrebB', '@id': '/targets/CrebB-dmelanogaster/', 'title': 'CrebB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8130fb12-c349-48e5-9181-71adeca43a21', 'status': 'released'} dm3 X 18359804 18382619 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF541UIT/ 17626346 Kevin White, UChicago 3dc432b7f1b2e59ddf2b516ee3a5a464 https://www.encodeproject.org/files/ENCFF002PAP/@@download/ENCFF002PAP.bigWig released s3://encode-public/2018/05/30/adf34b4e-9d08-4884-8801-8b41479d8e05/ENCFF002PAP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001NUJ fastq fastq reads ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 single-ended 1190869193 Michael Snyder, Stanford bec2e4357a0e66f9a1145d54d9eef77d https://www.encodeproject.org/files/ENCFF001NUJ/@@download/ENCFF001NUJ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/13ab8e90-f55d-43ba-81cb-d0b23520168e/ENCFF001NUJ.fastq.gz low read depth, low read length ENCFF001NUO bigWig bigWig signal mm9 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 /files/ENCFF001NUP/ 374561173 Michael Snyder, Stanford 58061b58b1a68fbe602837d6d7b80560 https://www.encodeproject.org/files/ENCFF001NUO/@@download/ENCFF001NUO.bigWig archived s3://encode-public/2012/08/01/2919a53a-1b98-43fb-94cf-29fd71e482ff/ENCFF001NUO.bigWig Lab custom mm9 archived low read depth, low read length ENCFF001NUP bam bam alignments mm9 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 27 /files/ENCFF001NUJ/ 982295981 Michael Snyder, Stanford bfe20db607504aad5df8f4ced189dc57 https://www.encodeproject.org/files/ENCFF001NUP/@@download/ENCFF001NUP.bam archived s3://encode-public/2012/08/01/821f2cc3-4636-450b-b01d-d349e7ab8116/ENCFF001NUP.bam Lab custom mm9 archived low read depth, low read length ENCFF001NUM fastq fastq reads ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 2 2_1 36 single-ended 1131718130 Michael Snyder, Stanford 1b3f727d0a92c758c6333feec1be360a https://www.encodeproject.org/files/ENCFF001NUM/@@download/ENCFF001NUM.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/ad8ab49e-18dd-4406-8eb6-9457cee0ba46/ENCFF001NUM.fastq.gz low read depth, low read length ENCFF671RKO bam bam unfiltered alignments mm10-minimal ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF001NUJ/, /files/ENCFF806TVZ/ 1329055144 J. Michael Cherry, Stanford 77f62ea9376734041fc89fd9861ab59f https://www.encodeproject.org/files/ENCFF671RKO/@@download/ENCFF671RKO.bam archived s3://encode-public/2015/02/09/18905732-53ee-4cdf-8802-cf355a0ea267/ENCFF671RKO.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF591DUL bam bam unfiltered alignments mm10-minimal ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 2 2_1 36 /files/ENCFF001NUM/, /files/ENCFF806TVZ/ 1267364496 J. 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/files/ENCFF018NEO/, /files/ENCFF001NUJ/ 1330641354 ENCODE Processing Pipeline 7f44c82d4f72d919fc1dab907ce327d9 https://www.encodeproject.org/files/ENCFF190WZK/@@download/ENCFF190WZK.bam released s3://encode-public/2016/10/26/9118b73e-66b8-4283-9ed1-5964de47e01e/ENCFF190WZK.bam ENCODE3 mm10 archived low read depth, low read length ENCFF157OGB bam bam alignments mm10 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001NUM/ 833575879 ENCODE Processing Pipeline eba004eb944dc1f0714335579e1f3899 https://www.encodeproject.org/files/ENCFF157OGB/@@download/ENCFF157OGB.bam released s3://encode-public/2016/10/26/a404c93e-de70-4a0d-9832-fbcdaedfcc72/ENCFF157OGB.bam ENCODE3 mm10 archived low read depth, low read length ENCFF273KKQ bam bam alignments mm10 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NUJ/ 857907565 ENCODE Processing Pipeline 6e8c34dd7e9b37cda69d92271f31e407 https://www.encodeproject.org/files/ENCFF273KKQ/@@download/ENCFF273KKQ.bam released s3://encode-public/2016/10/26/cf843e52-1c46-4fae-bc66-323f72c8aa41/ENCFF273KKQ.bam ENCODE3 mm10 archived low read depth, low read length ENCFF730PMX bam bam unfiltered alignments mm10 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NUJ/ 1306260435 ENCODE Processing Pipeline 825f2e38af176be950c79135f007b28a https://www.encodeproject.org/files/ENCFF730PMX/@@download/ENCFF730PMX.bam released s3://encode-public/2020/11/06/856d3ad8-330f-40b9-93b8-f1f6aa9678cb/ENCFF730PMX.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF210BAN bam bam unfiltered alignments mm10 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NUM/ 1245411220 ENCODE Processing Pipeline 565d8fe469eeeea031cd7afd0d64da65 https://www.encodeproject.org/files/ENCFF210BAN/@@download/ENCFF210BAN.bam released s3://encode-public/2020/11/06/d80ef79f-b024-4bb0-b4c4-f6b08e8c8147/ENCFF210BAN.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF443WBS bam bam alignments mm10 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NUJ/ 907962225 ENCODE Processing Pipeline 1095076d3213f76ab7554e6af79968ed https://www.encodeproject.org/files/ENCFF443WBS/@@download/ENCFF443WBS.bam released s3://encode-public/2020/11/06/59a8ce5d-c1f5-4da8-999e-745fc16238cd/ENCFF443WBS.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF409NKC bam bam alignments mm10 ENCSR000ETJ Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NUM/ 881952328 ENCODE Processing Pipeline 51df5ba233492aaa97a83d024301af92 https://www.encodeproject.org/files/ENCFF409NKC/@@download/ENCFF409NKC.bam released s3://encode-public/2020/11/06/27e210cd-3d74-41b1-ac84-90d458da7398/ENCFF409NKC.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF179TDC bam bam unfiltered alignments hg19 ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF697PWI/, /files/ENCFF486HGM/ 6932174026 ENCODE Processing Pipeline d5b95920c6625e18579214612ce1c1d9 https://www.encodeproject.org/files/ENCFF179TDC/@@download/ENCFF179TDC.bam released s3://encode-public/2018/02/21/78f495d9-c901-448f-81a3-b91dfa538b46/ENCFF179TDC.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF697PWI fastq fastq reads ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF486HGM/ 3188578468 Michael Snyder, Stanford be22d66369198cb7ccb43175eb3cb041 SRA:SRR5112346 https://www.encodeproject.org/files/ENCFF697PWI/@@download/ENCFF697PWI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/2b800be5-f7f3-465e-93ec-16cb3203a819/ENCFF697PWI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF486HGM fastq fastq reads ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF697PWI/ 3217454503 Michael Snyder, Stanford bcdfd2f964664c5c4dfa22d5fbc55609 SRA:SRR5112346 https://www.encodeproject.org/files/ENCFF486HGM/@@download/ENCFF486HGM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/bac9de80-6dc5-4d61-95ab-404b4098caaf/ENCFF486HGM.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF563OVT bam bam alignments hg19 ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF697PWI/, /files/ENCFF486HGM/ 5878348657 ENCODE Processing Pipeline ec3c9bee3b01bb9d598b76f8c0c0ec76 https://www.encodeproject.org/files/ENCFF563OVT/@@download/ENCFF563OVT.bam released s3://encode-public/2015/12/09/b7693ab8-1a35-496d-b504-984c5621bf3f/ENCFF563OVT.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF911DUX bam bam unfiltered alignments GRCh38 ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF697PWI/, /files/ENCFF486HGM/ 6944887818 ENCODE Processing Pipeline c2626dcb4f4da858238e992e29023a1e https://www.encodeproject.org/files/ENCFF911DUX/@@download/ENCFF911DUX.bam released s3://encode-public/2016/05/06/fe903c2c-e159-4e15-9a51-76f4e7a6713f/ENCFF911DUX.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF936BLQ bam bam alignments GRCh38 ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF697PWI/, /files/ENCFF486HGM/ 5883520480 ENCODE Processing Pipeline dbff5dcc8739effc3b30e0c5f0f9ede9 https://www.encodeproject.org/files/ENCFF936BLQ/@@download/ENCFF936BLQ.bam released s3://encode-public/2016/05/06/88524a90-9b2e-47d9-b7a8-ef6941a7b73a/ENCFF936BLQ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF600STZ bam bam unfiltered alignments GRCh38 ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF486HGM/, /files/ENCFF697PWI/, /files/ENCFF110MCL/ 6814482192 ENCODE Processing Pipeline 578d97393e72b0a1127c26f284f1c7d3 https://www.encodeproject.org/files/ENCFF600STZ/@@download/ENCFF600STZ.bam released s3://encode-public/2020/10/28/df163655-4405-41c1-9b70-f46b403fb117/ENCFF600STZ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF325TFI bam bam alignments GRCh38 ENCSR962GNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-195'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51621/'], '@type': ['Target', 'Item'], 'name': 'KLF13-human', 'label': 'KLF13', '@id': '/targets/KLF13-human/', 'title': 'KLF13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4e9e5e04-8723-4bcc-bb13-54eb331baa49', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF486HGM/, /files/ENCFF697PWI/, /files/ENCFF110MCL/ 5489113756 ENCODE Processing Pipeline 149a9c43cb1369fcf0b1c67bcea06b9a https://www.encodeproject.org/files/ENCFF325TFI/@@download/ENCFF325TFI.bam released s3://encode-public/2020/10/28/96dc98d8-bc72-4dbd-b9eb-14883f54807c/ENCFF325TFI.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF109VCO bam bam unfiltered alignments hg19 ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF241ECN/, /files/ENCFF217VQE/, /files/ENCFF807MUK/ 2821056725 ENCODE Processing Pipeline 7c9767154ccad60ab9f9d9b5e91636e1 https://www.encodeproject.org/files/ENCFF109VCO/@@download/ENCFF109VCO.bam released s3://encode-public/2018/02/21/5bac1d5d-28a6-46c2-8b8e-2d278e3c4b17/ENCFF109VCO.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF217VQE fastq fastq reads ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF241ECN/ 1209059708 Michael Snyder, Stanford 8fc01dc9c3fefdea30ff47e51018062a SRA:SRR5111775 https://www.encodeproject.org/files/ENCFF217VQE/@@download/ENCFF217VQE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/78f51a66-1242-4269-ab17-436b2f17b7b1/ENCFF217VQE.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF241ECN fastq fastq reads ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF217VQE/ 1270885088 Michael Snyder, Stanford 0d9a07f6c1c6db85db82dda988cb69a8 SRA:SRR5111775 https://www.encodeproject.org/files/ENCFF241ECN/@@download/ENCFF241ECN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/90e5b55b-0b91-404c-9044-61e5eaae2d01/ENCFF241ECN.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF180DLN bam bam alignments hg19 ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF241ECN/, /files/ENCFF217VQE/, /files/ENCFF807MUK/ 2372686841 ENCODE Processing Pipeline 456aa466fae6f033d23081eb76113078 https://www.encodeproject.org/files/ENCFF180DLN/@@download/ENCFF180DLN.bam released s3://encode-public/2015/12/09/800a10b8-68f2-4e6f-bade-0fbf4d5a4ee9/ENCFF180DLN.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF485XVB bam bam unfiltered alignments GRCh38 ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF241ECN/, /files/ENCFF217VQE/, /files/ENCFF643CGH/ 2826145647 ENCODE Processing Pipeline d77cdac38dde33d07db7ab57a7710628 https://www.encodeproject.org/files/ENCFF485XVB/@@download/ENCFF485XVB.bam released s3://encode-public/2016/05/06/cde5c195-c330-4303-b97d-aa5508ca39ee/ENCFF485XVB.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF596JNR bam bam alignments GRCh38 ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF241ECN/, /files/ENCFF217VQE/, /files/ENCFF643CGH/ 2374057966 ENCODE Processing Pipeline 4cd34305606756c2d180138962a406db https://www.encodeproject.org/files/ENCFF596JNR/@@download/ENCFF596JNR.bam released s3://encode-public/2016/05/06/915a63d1-ac16-4bc4-8c75-feb78d9770ff/ENCFF596JNR.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF654OPO bam bam unfiltered alignments GRCh38 ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF241ECN/, /files/ENCFF217VQE/ 2825447357 ENCODE Processing Pipeline 86578e6eda8d9c4a3b8b5a39b2adbec8 https://www.encodeproject.org/files/ENCFF654OPO/@@download/ENCFF654OPO.bam released s3://encode-public/2020/06/13/9bedf8c5-0735-4bb2-8a5e-705a0c8b9cab/ENCFF654OPO.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF198WXC bam bam alignments GRCh38 ENCSR557SDQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25988/'], '@type': ['Target', 'Item'], 'name': 'HINFP-human', 'label': 'HINFP', '@id': '/targets/HINFP-human/', 'title': 'HINFP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '84406cfe-b625-4b7c-896e-7e9154ffc636', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF241ECN/, /files/ENCFF217VQE/ 2307529247 ENCODE Processing Pipeline 42664e301f267d595ae53dedabc3ae08 https://www.encodeproject.org/files/ENCFF198WXC/@@download/ENCFF198WXC.bam released s3://encode-public/2020/06/13/abc04c72-abf4-485a-ac43-a98ee73f7638/ENCFF198WXC.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF179TMO fastq fastq reads ENCSR062TDA Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 780120297 Kevin White, UChicago cb6eed9f48308b6f9058817244e62e23 https://www.encodeproject.org/files/ENCFF179TMO/@@download/ENCFF179TMO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/1c0269ee-07b0-4334-a276-2210e50f4060/ENCFF179TMO.fastq.gz missing external identifiers ENCFF629EWI bam bam alignments dm3 ENCSR062TDA Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF179TMO/ 1005791445 Kevin White, UChicago b7783ec69431204ac2609c0705f8f503 https://www.encodeproject.org/files/ENCFF629EWI/@@download/ENCFF629EWI.bam released s3://encode-public/2017/06/18/76630be1-53d3-4994-a373-aec8fbfb7130/ENCFF629EWI.bam Lab custom dm3 archived missing external identifiers ENCFF360RSD bam bam alignments dm6 ENCSR062TDA Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF179TMO/ 994858426 Kevin White, UChicago d8b306ecbce3723c8388181a15e4984a https://www.encodeproject.org/files/ENCFF360RSD/@@download/ENCFF360RSD.bam released s3://encode-public/2017/06/28/817553c1-b9c2-49d3-9a0a-0266f3626424/ENCFF360RSD.bam Lab custom dm6 released missing external identifiers ENCFF722RLT bigWig bigWig signal of unique reads dm3 ENCSR062TDA Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF629EWI/ 15269927 Kevin White, UChicago 7f4dcda2b7011a5a067c10634e434ba6 https://www.encodeproject.org/files/ENCFF722RLT/@@download/ENCFF722RLT.bigWig released s3://encode-public/2017/06/29/2378e0f2-6cb7-4d82-b7e7-9e8c151ae9c6/ENCFF722RLT.bigWig Lab custom dm3 archived missing external identifiers ENCFF691YAE bigWig bigWig read-depth normalized signal dm3 ENCSR062TDA Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF629EWI/ 15322933 Kevin White, UChicago 535e04fac1101af9260d4d850cfd0662 https://www.encodeproject.org/files/ENCFF691YAE/@@download/ENCFF691YAE.bigWig released s3://encode-public/2017/06/29/c167b6a1-4b91-463b-83fe-ece51b5dc635/ENCFF691YAE.bigWig Lab custom dm3 archived missing external identifiers ENCFF493EMW bigWig bigWig read-depth normalized signal dm6 ENCSR062TDA Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF360RSD/ 17250790 Kevin White, UChicago c3814edbe0c26d1b66a5c658041ebfe5 https://www.encodeproject.org/files/ENCFF493EMW/@@download/ENCFF493EMW.bigWig released s3://encode-public/2017/06/30/42348b93-2bc5-4447-aa1b-dcf714745103/ENCFF493EMW.bigWig Lab custom dm6 released missing external identifiers ENCFF733BLZ bigWig bigWig signal of unique reads dm6 ENCSR062TDA Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF360RSD/ 17191604 Kevin White, UChicago 7e0c80ae197332445a8c1a3d90c0ba72 https://www.encodeproject.org/files/ENCFF733BLZ/@@download/ENCFF733BLZ.bigWig released s3://encode-public/2017/06/30/fcd0f50a-6016-4cf8-9504-4bb238ab014c/ENCFF733BLZ.bigWig Lab custom dm6 released missing external identifiers ENCFF806FHS fastq fastq reads ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 809041283 Bradley Bernstein, Broad 908d1e16461a233c68c8557a512b9477 SRA:SRR10388711 https://www.encodeproject.org/files/ENCFF806FHS/@@download/ENCFF806FHS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/a00cf1d0-5999-4790-a161-fbd11f3734fa/ENCFF806FHS.fastq.gz ENCFF197BET fastq fastq reads ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_2 76 single-ended 949131237 Bradley Bernstein, Broad 47242d1c01e829cd3a0e110ae1a1ea62 SRA:SRR10388713 https://www.encodeproject.org/files/ENCFF197BET/@@download/ENCFF197BET.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/bde2500f-af50-42b5-b35f-cbec06253a90/ENCFF197BET.fastq.gz ENCFF499TFY fastq fastq reads ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 809897004 Bradley Bernstein, Broad c422529c13ca225c84c9d7670ea7aac8 SRA:SRR10388712 https://www.encodeproject.org/files/ENCFF499TFY/@@download/ENCFF499TFY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/f0401296-e2b7-48dc-b6ce-ad5a4d318afe/ENCFF499TFY.fastq.gz ENCFF046OPD fastq fastq reads ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_2 76 single-ended 943552842 Bradley Bernstein, Broad 46539d8604984b2d5b98cdca5a2c2fce SRA:SRR10388714 https://www.encodeproject.org/files/ENCFF046OPD/@@download/ENCFF046OPD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/28/37370b97-1eb6-4fda-9b70-45b25edc1837/ENCFF046OPD.fastq.gz ENCFF378REO bam bam unfiltered alignments hg19 ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF806FHS/, /files/ENCFF197BET/, /files/ENCFF046OPD/, /files/ENCFF807MUK/, /files/ENCFF499TFY/ 3452077053 ENCODE Processing Pipeline 5500fec2afd85ca90432d921e2f09205 https://www.encodeproject.org/files/ENCFF378REO/@@download/ENCFF378REO.bam released s3://encode-public/2019/06/12/9063c557-82aa-4f2c-beee-47201654439d/ENCFF378REO.bam ENCODE3 hg19 archived ENCFF022GIY bam bam unfiltered alignments GRCh38 ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF806FHS/, /files/ENCFF197BET/, /files/ENCFF046OPD/, /files/ENCFF499TFY/, /files/ENCFF643CGH/ 3459862550 ENCODE Processing Pipeline 9ad9225892a6d5354b7932758af34764 https://www.encodeproject.org/files/ENCFF022GIY/@@download/ENCFF022GIY.bam released s3://encode-public/2019/06/12/e659cce7-05c5-4b5e-8570-11a5b33ce993/ENCFF022GIY.bam ENCODE3 GRCh38 archived ENCFF755BFK bam bam alignments hg19 ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF806FHS/, /files/ENCFF197BET/, /files/ENCFF046OPD/, /files/ENCFF807MUK/, /files/ENCFF499TFY/ 2861673516 ENCODE Processing Pipeline f9cad1689661c4fa1643dedc80e0d841 https://www.encodeproject.org/files/ENCFF755BFK/@@download/ENCFF755BFK.bam released s3://encode-public/2019/06/12/985182bf-277b-47d8-b658-d29549539e23/ENCFF755BFK.bam ENCODE3 hg19 archived ENCFF259JSG bam bam alignments GRCh38 ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF806FHS/, /files/ENCFF197BET/, /files/ENCFF046OPD/, /files/ENCFF499TFY/, /files/ENCFF643CGH/ 2865324160 ENCODE Processing Pipeline b9f7196b1b098cf1ff973d11ecb8bc1d https://www.encodeproject.org/files/ENCFF259JSG/@@download/ENCFF259JSG.bam released s3://encode-public/2019/06/12/86fa0d87-4b87-490f-8ad0-7ecb2e67b1d4/ENCFF259JSG.bam ENCODE3 GRCh38 archived ENCFF975MOR bam bam unfiltered alignments GRCh38 ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF806FHS/, /files/ENCFF197BET/, /files/ENCFF046OPD/, /files/ENCFF499TFY/ 3443718975 ENCODE Processing Pipeline 4f6c72b0b9427fc394eae1aac37a6312 https://www.encodeproject.org/files/ENCFF975MOR/@@download/ENCFF975MOR.bam released s3://encode-public/2020/09/19/de4b508f-7817-4422-b360-08f52d2b3ee3/ENCFF975MOR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF883HRL bam bam alignments GRCh38 ENCSR807FIZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF806FHS/, /files/ENCFF197BET/, /files/ENCFF046OPD/, /files/ENCFF499TFY/ 2872339427 ENCODE Processing Pipeline 5ee7f60d192432095f7e263e0fcfbc23 https://www.encodeproject.org/files/ENCFF883HRL/@@download/ENCFF883HRL.bam released s3://encode-public/2020/09/19/eb7ede42-8102-4be9-9ab0-8f32429767a3/ENCFF883HRL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF223XHF fastq fastq reads ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 3100946159 Bing Ren, UCSD df43e4dc21ae798db1324bca243cb496 SRA:SRR3651306 https://www.encodeproject.org/files/ENCFF223XHF/@@download/ENCFF223XHF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/0370c65f-b92c-4099-8c65-3fa8b9e2a0fc/ENCFF223XHF.fastq.gz inconsistent platforms ENCFF835CWG fastq fastq reads ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2735034956 Bing Ren, UCSD 69c63d814babd61c2e0c69fed323f57e SRA:SRR3651303 https://www.encodeproject.org/files/ENCFF835CWG/@@download/ENCFF835CWG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/b1ebe81d-7064-40bf-acdf-b1a6d6c7c137/ENCFF835CWG.fastq.gz inconsistent platforms ENCFF263OMS bam bam alignments mm10-minimal ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF223XHF/ 2596178757 ENCODE Processing Pipeline 893199fbc0b3c001a5c92f101f2be4d2 https://www.encodeproject.org/files/ENCFF263OMS/@@download/ENCFF263OMS.bam archived s3://encode-public/2015/10/31/e7b3a586-9523-4940-9902-1727007cc54d/ENCFF263OMS.bam inconsistent platforms ENCFF667WJC bam bam alignments mm10-minimal ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF835CWG/ 2124555683 ENCODE Processing Pipeline 0ff52260e1d8ba083987c443c258adab https://www.encodeproject.org/files/ENCFF667WJC/@@download/ENCFF667WJC.bam archived s3://encode-public/2015/10/31/c118d839-6d76-4aa6-ac50-0763c01a4705/ENCFF667WJC.bam inconsistent platforms ENCFF293FQT bam bam unfiltered alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF223XHF/ 3772907768 ENCODE Processing Pipeline c7672e7816dc8ca352175f6c37e3e771 https://www.encodeproject.org/files/ENCFF293FQT/@@download/ENCFF293FQT.bam released s3://encode-public/2016/05/20/64e99a01-a174-41e3-a229-641e26ca6d9c/ENCFF293FQT.bam ENCODE3 mm10 archived inconsistent platforms ENCFF031OYA bam bam alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF223XHF/ 2595493157 ENCODE Processing Pipeline 96e01a9e46ff2f0afc11c262dbda171e https://www.encodeproject.org/files/ENCFF031OYA/@@download/ENCFF031OYA.bam released s3://encode-public/2016/05/20/b3e45e23-69f3-4402-99c5-22aa1fa775e8/ENCFF031OYA.bam ENCODE3 mm10 archived inconsistent platforms ENCFF448VOB fastq fastq reads ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 303892799 Bing Ren, UCSD 0c280f5cbcc5e16b09a0a64beb5ad7ab SRA:SRR3651304 https://www.encodeproject.org/files/ENCFF448VOB/@@download/ENCFF448VOB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/db563eaa-8918-4df0-9502-012826a73ec2/ENCFF448VOB.fastq.gz inconsistent platforms ENCFF528TKO fastq fastq reads ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 830365087 Bing Ren, UCSD df38ee5348ae2565915892b6e17d436d SRA:SRR3651305 https://www.encodeproject.org/files/ENCFF528TKO/@@download/ENCFF528TKO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/1583536e-983e-4dd6-a8f6-ffd6c6592473/ENCFF528TKO.fastq.gz inconsistent platforms ENCFF514GVM bam bam alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF528TKO/, /files/ENCFF018NEO/, /files/ENCFF448VOB/, /files/ENCFF835CWG/ 3291859273 ENCODE Processing Pipeline 7d360b14ac2692d1bcbb7ae14435d30a https://www.encodeproject.org/files/ENCFF514GVM/@@download/ENCFF514GVM.bam released s3://encode-public/2016/07/18/2684df1d-622b-4a8b-a050-499e0169e26f/ENCFF514GVM.bam ENCODE3 mm10 archived inconsistent platforms ENCFF326OAB bam bam unfiltered alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF528TKO/, /files/ENCFF018NEO/, /files/ENCFF448VOB/, /files/ENCFF835CWG/ 4975912951 ENCODE Processing Pipeline d51ac8d4e8aa126f3ce4944ef99f1324 https://www.encodeproject.org/files/ENCFF326OAB/@@download/ENCFF326OAB.bam released s3://encode-public/2016/07/18/0416d169-c745-4bdc-b580-ecfd2f7db10a/ENCFF326OAB.bam ENCODE3 mm10 archived inconsistent platforms ENCFF028GTL bam bam alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF223XHF/, /files/ENCFF309GLL/ 2694143314 ENCODE Processing Pipeline a5d796cbd948f826e25bd81fde4ae855 https://www.encodeproject.org/files/ENCFF028GTL/@@download/ENCFF028GTL.bam released s3://encode-public/2020/10/08/1ebc722a-7946-4f25-9ad6-84496e0bf76f/ENCFF028GTL.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF195WJV bam bam unfiltered alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF223XHF/, /files/ENCFF309GLL/ 3707530943 ENCODE Processing Pipeline 028edc2129727261b73e2b62ca6e3abe https://www.encodeproject.org/files/ENCFF195WJV/@@download/ENCFF195WJV.bam released s3://encode-public/2020/10/08/2e508ad8-b502-400e-a35d-07a38ce2fb34/ENCFF195WJV.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF996VJA bam bam unfiltered alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF835CWG/, /files/ENCFF448VOB/, /files/ENCFF528TKO/, /files/ENCFF309GLL/ 4823922909 ENCODE Processing Pipeline 2526544b1797686daf5d92342a84fdf9 https://www.encodeproject.org/files/ENCFF996VJA/@@download/ENCFF996VJA.bam released s3://encode-public/2020/10/08/6c1e27b0-b0a8-41a2-a1f5-4ca8a3e35d94/ENCFF996VJA.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF905RGB bam bam alignments mm10 ENCSR070OXL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF835CWG/, /files/ENCFF448VOB/, /files/ENCFF528TKO/, /files/ENCFF309GLL/ 3355712679 ENCODE Processing Pipeline 5e1bae5a729302624140da0d56071c28 https://www.encodeproject.org/files/ENCFF905RGB/@@download/ENCFF905RGB.bam released s3://encode-public/2020/10/08/f756885c-1424-42bb-8d66-e110245eb330/ENCFF905RGB.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF427OYR bam bam redacted alignments GRCh38 ENCSR895KPB Control ChIP-seq /human-donors/ENCDO594MAO/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF688FIR/, /files/ENCFF643CGH/, /files/ENCFF772GQX/ 597265284 ENCODE Processing Pipeline 5011a1783d08c60c8e3dbda62e531864 https://www.encodeproject.org/files/ENCFF427OYR/@@download/ENCFF427OYR.bam released s3://encode-public/2017/11/28/41a6873e-f9de-41df-b240-ffc322e4599b/ENCFF427OYR.bam ENCODE3 GRCh38 archived low read depth ENCFF378LBV bam bam redacted unfiltered alignments GRCh38 ENCSR895KPB Control ChIP-seq /human-donors/ENCDO594MAO/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF688FIR/, /files/ENCFF643CGH/, /files/ENCFF772GQX/ 842751725 ENCODE Processing Pipeline a83539ef51de5940d270c94edeec509c https://www.encodeproject.org/files/ENCFF378LBV/@@download/ENCFF378LBV.bam released s3://encode-public/2017/11/28/62fbf49e-e61c-4d5d-82ef-094af9310530/ENCFF378LBV.bam ENCODE3 GRCh38 archived low read depth ENCFF192AEG bam bam redacted unfiltered alignments hg19 ENCSR895KPB Control ChIP-seq /human-donors/ENCDO594MAO/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF688FIR/, /files/ENCFF807MUK/, /files/ENCFF772GQX/ 835170684 ENCODE Processing Pipeline 61c32a4c0d87177bba9fee6416e5790e https://www.encodeproject.org/files/ENCFF192AEG/@@download/ENCFF192AEG.bam released s3://encode-public/2018/01/20/e3219e15-811a-4eca-b507-0c1d4f05f0a8/ENCFF192AEG.bam ENCODE3 hg19 archived low read depth ENCFF752CNJ bam bam redacted alignments hg19 ENCSR895KPB Control ChIP-seq /human-donors/ENCDO594MAO/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF688FIR/, /files/ENCFF807MUK/, /files/ENCFF772GQX/ 597102110 ENCODE Processing Pipeline e8227ba6eee2ff0acd6513733921c32d https://www.encodeproject.org/files/ENCFF752CNJ/@@download/ENCFF752CNJ.bam released s3://encode-public/2018/01/20/184e4087-583f-4051-9ac9-567b73bb4d64/ENCFF752CNJ.bam ENCODE3 hg19 archived low read depth ENCFF014GVK bam bam redacted alignments GRCh38 ENCSR895KPB Control ChIP-seq /human-donors/ENCDO594MAO/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF891DJN/, /files/ENCFF110MCL/, /files/ENCFF125NIU/ 2943541971 ENCODE Processing Pipeline 549bd0fcdb840405b7345eda50ce915e https://www.encodeproject.org/files/ENCFF014GVK/@@download/ENCFF014GVK.bam released s3://encode-public/2021/01/28/3ac66fd0-44f6-479f-ad2c-39d5a47d7ed2/ENCFF014GVK.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF873WII tagAlign tagAlign alignments hg19 ENCSR589NSH Control ChIP-seq /human-donors/ENCDO724KBU/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF390MCT/ 158443500 Anshul Kundaje, Stanford 4080edf351d5351f55082bd20c66f2fe https://www.encodeproject.org/files/ENCFF873WII/@@download/ENCFF873WII.tagAlign.gz archived s3://encode-public/2016/02/11/af9a8681-f4e2-4063-bd42-3ccd7434c2d6/ENCFF873WII.tagAlign.gz Lab custom hg19 archived low read length ENCFF722BJU bam bam redacted alignments GRCh38 ENCSR589NSH Control ChIP-seq /human-donors/ENCDO724KBU/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF390MCT/ 320191035 ENCODE Processing Pipeline 55edee03eb62125cb829be607163a7d7 https://www.encodeproject.org/files/ENCFF722BJU/@@download/ENCFF722BJU.bam released s3://encode-public/2018/01/18/3ef326ad-ce28-45dc-8273-1fe5fd29e20c/ENCFF722BJU.bam ENCODE3 GRCh38 archived low read length ENCFF035VUJ bam bam redacted unfiltered alignments GRCh38 ENCSR589NSH Control ChIP-seq /human-donors/ENCDO724KBU/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF390MCT/ 443394688 ENCODE Processing Pipeline 4982bfc56b0abec0799a46e488653dff https://www.encodeproject.org/files/ENCFF035VUJ/@@download/ENCFF035VUJ.bam released s3://encode-public/2018/01/18/40175f7a-dc22-463e-904f-72f400bcd2e9/ENCFF035VUJ.bam ENCODE3 GRCh38 archived low read length ENCFF629BUR bam bam redacted alignments hg19 ENCSR589NSH Control ChIP-seq /human-donors/ENCDO724KBU/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF390MCT/ 320067866 ENCODE Processing Pipeline 31050db9ba033c33d741214577521d8d https://www.encodeproject.org/files/ENCFF629BUR/@@download/ENCFF629BUR.bam released s3://encode-public/2018/01/19/d0d8d4d3-37dc-4bf0-b462-77e10e1cfde5/ENCFF629BUR.bam ENCODE3 hg19 archived low read length ENCFF412TVG bam bam redacted unfiltered alignments hg19 ENCSR589NSH Control ChIP-seq /human-donors/ENCDO724KBU/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF390MCT/ 436749807 ENCODE Processing Pipeline 0ca91aa73bd2965181fbdb75753ef0f8 https://www.encodeproject.org/files/ENCFF412TVG/@@download/ENCFF412TVG.bam released s3://encode-public/2018/01/19/0b6cca97-c99c-443f-a04b-a373302ebf77/ENCFF412TVG.bam ENCODE3 hg19 archived low read length ENCFF987QRO bam bam redacted alignments GRCh38 ENCSR589NSH Control ChIP-seq /human-donors/ENCDO724KBU/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF390MCT/ 978379591 ENCODE Processing Pipeline 6613fe0bd089baff0f460fe3e22282f5 https://www.encodeproject.org/files/ENCFF987QRO/@@download/ENCFF987QRO.bam released s3://encode-public/2021/01/27/6ee62185-2b8a-4e32-aa84-466b3f9fb709/ENCFF987QRO.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF977RFT fastq fastq reads ENCSR560IUO Control ChIP-seq /worm-donors/ENCDO633CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181737/'], '@type': ['Target', 'Item'], 'name': 'T20F7.1-celegans', 'label': 'T20F7.1', '@id': '/targets/T20F7.1-celegans/', 'title': 'T20F7.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6f85dada-99c3-474b-adeb-698771393ca0', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 866036179 Kevin White, UChicago c17d0a17c4d15d3d64e5ccc15c546c0b https://www.encodeproject.org/files/ENCFF977RFT/@@download/ENCFF977RFT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/cf579b44-eee9-420b-93ed-67ebf0241669/ENCFF977RFT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF544YRC bam bam alignments ce11 ENCSR560IUO Control ChIP-seq /worm-donors/ENCDO633CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181737/'], '@type': ['Target', 'Item'], 'name': 'T20F7.1-celegans', 'label': 'T20F7.1', '@id': '/targets/T20F7.1-celegans/', 'title': 'T20F7.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6f85dada-99c3-474b-adeb-698771393ca0', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF977RFT/, /files/ENCFF586MOL/ 1142838233 Kevin White, UChicago a2266984d0be94284a40c71f87d6ecee https://www.encodeproject.org/files/ENCFF544YRC/@@download/ENCFF544YRC.bam released s3://encode-public/2018/05/31/06d4fe6b-5915-4175-9237-e7b32057eb61/ENCFF544YRC.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF553EQN bigWig bigWig read-depth normalized signal ce11 ENCSR560IUO Control ChIP-seq /worm-donors/ENCDO633CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181737/'], '@type': ['Target', 'Item'], 'name': 'T20F7.1-celegans', 'label': 'T20F7.1', '@id': '/targets/T20F7.1-celegans/', 'title': 'T20F7.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6f85dada-99c3-474b-adeb-698771393ca0', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF544YRC/ 10129501 Kevin White, UChicago 75feee53370433af46919df73217d839 https://www.encodeproject.org/files/ENCFF553EQN/@@download/ENCFF553EQN.bigWig released s3://encode-public/2018/05/31/66ae9856-8d7a-4d95-974e-2da2c6b24e81/ENCFF553EQN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF575RYT bigWig bigWig signal of unique reads ce11 ENCSR560IUO Control ChIP-seq /worm-donors/ENCDO633CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181737/'], '@type': ['Target', 'Item'], 'name': 'T20F7.1-celegans', 'label': 'T20F7.1', '@id': '/targets/T20F7.1-celegans/', 'title': 'T20F7.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6f85dada-99c3-474b-adeb-698771393ca0', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF544YRC/ 10126347 Kevin White, UChicago 91ccd9530085da74b71a5557ab040a88 https://www.encodeproject.org/files/ENCFF575RYT/@@download/ENCFF575RYT.bigWig released s3://encode-public/2018/05/31/819287e2-65eb-4f25-94ef-1af5e09ec8a7/ENCFF575RYT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF456IOD fastq fastq reads ENCSR370EGA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 921016507 Kevin White, UChicago 00f497d6a629ce77a88062b8c85ea858 https://www.encodeproject.org/files/ENCFF456IOD/@@download/ENCFF456IOD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/29c6c9c3-f09e-43c5-a3f2-75e766e23f7e/ENCFF456IOD.fastq.gz ENCFF284HMI bam bam alignments dm3 ENCSR370EGA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF456IOD/ 1170304625 Kevin White, UChicago bf6538ca69f56e50c41a16a5f217d9b5 https://www.encodeproject.org/files/ENCFF284HMI/@@download/ENCFF284HMI.bam released s3://encode-public/2017/07/03/f0dbee11-b207-42aa-abbb-875bcddb175b/ENCFF284HMI.bam Lab custom dm3 archived ENCFF447ETP bam bam alignments dm6 ENCSR370EGA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF456IOD/ 1162792280 Kevin White, UChicago 8b7df8bf1be987de73cf57089afada1e https://www.encodeproject.org/files/ENCFF447ETP/@@download/ENCFF447ETP.bam released s3://encode-public/2017/07/04/de1c0e6b-25dd-4b14-8cf6-10954039b6bd/ENCFF447ETP.bam Lab custom dm6 released ENCFF646TCE bigWig bigWig signal of unique reads dm3 ENCSR370EGA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF284HMI/ 15570864 Kevin White, UChicago 3efef138f9635785839c921272ea0f54 https://www.encodeproject.org/files/ENCFF646TCE/@@download/ENCFF646TCE.bigWig released s3://encode-public/2017/07/05/a00f99d7-d747-4de7-950c-ffbc8bc60232/ENCFF646TCE.bigWig Lab custom dm3 archived ENCFF280BUT bigWig bigWig read-depth normalized signal dm6 ENCSR370EGA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF447ETP/ 17701000 Kevin White, UChicago e92b7c43c7184e98b459dfb204d75e4c https://www.encodeproject.org/files/ENCFF280BUT/@@download/ENCFF280BUT.bigWig released s3://encode-public/2017/07/05/a72a3d7e-b53c-4291-b833-7532504746fc/ENCFF280BUT.bigWig Lab custom dm6 released ENCFF070MKH bigWig bigWig signal of unique reads dm6 ENCSR370EGA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF447ETP/ 17690643 Kevin White, UChicago 1739a6151fb9292884f3cc0a288134a6 https://www.encodeproject.org/files/ENCFF070MKH/@@download/ENCFF070MKH.bigWig released s3://encode-public/2017/07/05/cd8a4270-87c4-4f3e-bc94-5ef335baed7f/ENCFF070MKH.bigWig Lab custom dm6 released ENCFF409KGU bigWig bigWig read-depth normalized signal dm3 ENCSR370EGA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF284HMI/ 15582888 Kevin White, UChicago 86f845d74e14f96ad88132b5e684e5ae https://www.encodeproject.org/files/ENCFF409KGU/@@download/ENCFF409KGU.bigWig released s3://encode-public/2017/07/05/e2972710-1632-4f50-bdd7-53ac13458a89/ENCFF409KGU.bigWig Lab custom dm3 archived ENCFF654NML fastq fastq reads ENCSR609PJK Control ChIP-seq /worm-donors/ENCDO427XZI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183212/'], '@type': ['Target', 'Item'], 'name': 'cnd-1-celegans', 'label': 'cnd-1', '@id': '/targets/cnd-1-celegans/', 'title': 'cnd-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '61f287b2-03fb-42ca-9ecc-9be36c48dde5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 631211957 Kevin White, UChicago 2c9c4cc31864fd4c72166bd71bd4e1ba https://www.encodeproject.org/files/ENCFF654NML/@@download/ENCFF654NML.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/d189227c-9a92-4784-9ff2-ac33e02d3522/ENCFF654NML.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF870LLB bam bam alignments ce11 ENCSR609PJK Control ChIP-seq /worm-donors/ENCDO427XZI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183212/'], '@type': ['Target', 'Item'], 'name': 'cnd-1-celegans', 'label': 'cnd-1', '@id': '/targets/cnd-1-celegans/', 'title': 'cnd-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '61f287b2-03fb-42ca-9ecc-9be36c48dde5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF654NML/, /files/ENCFF586MOL/ 819634176 Kevin White, UChicago 7f3419cd781456b767bf9bd087cd6bc6 https://www.encodeproject.org/files/ENCFF870LLB/@@download/ENCFF870LLB.bam released s3://encode-public/2018/05/31/a3018ad6-bd0f-49a0-9555-364619905d58/ENCFF870LLB.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF460BXG bigWig bigWig signal of unique reads ce11 ENCSR609PJK Control ChIP-seq /worm-donors/ENCDO427XZI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183212/'], '@type': ['Target', 'Item'], 'name': 'cnd-1-celegans', 'label': 'cnd-1', '@id': '/targets/cnd-1-celegans/', 'title': 'cnd-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '61f287b2-03fb-42ca-9ecc-9be36c48dde5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870LLB/ 9929891 Kevin White, UChicago 92363a7e450e6f944364940bf6997196 https://www.encodeproject.org/files/ENCFF460BXG/@@download/ENCFF460BXG.bigWig released s3://encode-public/2018/05/31/5c7132bd-8c54-4e24-b4b9-252117bf87c2/ENCFF460BXG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF301LIF bigWig bigWig read-depth normalized signal ce11 ENCSR609PJK Control ChIP-seq /worm-donors/ENCDO427XZI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183212/'], '@type': ['Target', 'Item'], 'name': 'cnd-1-celegans', 'label': 'cnd-1', '@id': '/targets/cnd-1-celegans/', 'title': 'cnd-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '61f287b2-03fb-42ca-9ecc-9be36c48dde5', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870LLB/ 9927213 Kevin White, UChicago 939971a1b41de7e339bdf432b21458bd https://www.encodeproject.org/files/ENCFF301LIF/@@download/ENCFF301LIF.bigWig released s3://encode-public/2018/05/31/cf9e750c-a31d-409b-98a4-e63bb46dfc1a/ENCFF301LIF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF868NYD bam bam unfiltered alignments GRCh38 ENCSR316ZPQ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2, 1_3, 1_4 76 /files/ENCFF643IBB/, /files/ENCFF705LMT/, /files/ENCFF402ELM/, /files/ENCFF110MCL/, /files/ENCFF441EWR/, /files/ENCFF040WYL/, /files/ENCFF631BZM/, /files/ENCFF978JUG/, /files/ENCFF851NWU/ 9884465112 ENCODE Processing Pipeline 01758dedab714d2824d71aac81be67e4 https://www.encodeproject.org/files/ENCFF868NYD/@@download/ENCFF868NYD.bam released s3://encode-public/2020/09/20/3320b95b-3a87-4aef-8d9b-d9dac39d8e05/ENCFF868NYD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF040WYL fastq fastq reads ENCSR316ZPQ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1510809069 Bradley Bernstein, Broad 0fc00ad9ca80f1b9d1146e534685b80f SRA:SRR10837743 https://www.encodeproject.org/files/ENCFF040WYL/@@download/ENCFF040WYL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/1a82ff3d-a16d-4f2d-8644-bac952d1867d/ENCFF040WYL.fastq.gz 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s3://encode-public/2016/05/06/becc40c7-93c1-4a77-9c2d-870158b19e7a/ENCFF868RUE.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF220MKZ bam bam unfiltered alignments GRCh38 ENCSR298DKW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:PYGO2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90780/'], '@type': ['Target', 'Item'], 'label': 'PYGO2', 'title': 'PYGO2 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '65283184-0b36-42b4-84aa-f97ced0d29a1', 'schema_version': '14', 'name': 'PYGO2-human', '@id': '/targets/PYGO2-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF427TUR/, /files/ENCFF422LHF/ 5200779480 ENCODE Processing Pipeline 9a1b409b3b5ed6c7a610c1d31403561c https://www.encodeproject.org/files/ENCFF220MKZ/@@download/ENCFF220MKZ.bam released s3://encode-public/2020/06/13/4eb738b4-776a-4d15-8932-733046dedf5e/ENCFF220MKZ.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF426YDV bam bam alignments GRCh38 ENCSR298DKW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:PYGO2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90780/'], '@type': ['Target', 'Item'], 'label': 'PYGO2', 'title': 'PYGO2 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '65283184-0b36-42b4-84aa-f97ced0d29a1', 'schema_version': '14', 'name': 'PYGO2-human', '@id': '/targets/PYGO2-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF427TUR/, /files/ENCFF422LHF/ 4246616417 ENCODE Processing Pipeline 68ca64ff2b03b8fc6aa920716403d984 https://www.encodeproject.org/files/ENCFF426YDV/@@download/ENCFF426YDV.bam released s3://encode-public/2020/06/13/03023377-ca57-45d1-8e7c-615bfed71b6a/ENCFF426YDV.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF291BQL tagAlign tagAlign alignments hg19 ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF827WPA/ 290356434 Anshul Kundaje, Stanford 54ba7ce57eb24c46d417db0e0a5c0fc1 https://www.encodeproject.org/files/ENCFF291BQL/@@download/ENCFF291BQL.tagAlign.gz archived s3://encode-public/2016/03/30/efdaa849-9421-49a0-b45e-9f7e53650a8c/ENCFF291BQL.tagAlign.gz Lab custom hg19 archived low read length ENCFF827WPA fastq fastq reads ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2388467112 Zhiping Weng, UMass ffa5410e890a0dddffaab19c7355c262 SRA:SRR449624 https://www.encodeproject.org/files/ENCFF827WPA/@@download/ENCFF827WPA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/91828980-dc5e-47c5-b9f5-26ecc6a95d7a/ENCFF827WPA.fastq.gz low read length ENCFF395VIU bam bam unfiltered alignments GRCh38 ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF827WPA/, /files/ENCFF110MCL/ 2842066031 ENCODE Processing Pipeline 54a7893e3ebbd1a396ff708c0c7b997a https://www.encodeproject.org/files/ENCFF395VIU/@@download/ENCFF395VIU.bam released s3://encode-public/2020/10/10/8dfd50fe-f022-4f06-be32-fa66f3f32f41/ENCFF395VIU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF320NMU bam bam alignments GRCh38 ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF827WPA/, /files/ENCFF110MCL/ 1997727778 ENCODE Processing Pipeline 758382f679b41b8e7d44f835b0495362 https://www.encodeproject.org/files/ENCFF320NMU/@@download/ENCFF320NMU.bam released s3://encode-public/2020/10/10/e78804fd-3ac4-40c0-9594-dfb911a1155f/ENCFF320NMU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF783SXE bam bam unfiltered alignments GRCh38 ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF827WPA/, /files/ENCFF643CGH/ 2936628275 ENCODE Processing Pipeline 27aa02b0a1d7e7da6c2c32a74748c2ec https://www.encodeproject.org/files/ENCFF783SXE/@@download/ENCFF783SXE.bam released s3://encode-public/2016/12/19/9663cb91-56d6-4917-992e-34f1945de5fa/ENCFF783SXE.bam ENCODE3 GRCh38 archived low read length ENCFF388CKC bam bam unfiltered alignments hg19 ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF827WPA/, /files/ENCFF807MUK/ 2917074892 ENCODE Processing Pipeline e9c32fc6c87aa104c704bb4e8c686587 https://www.encodeproject.org/files/ENCFF388CKC/@@download/ENCFF388CKC.bam released s3://encode-public/2016/12/19/46c2fa30-1635-4e2b-8c9e-d5a3e7473ac2/ENCFF388CKC.bam ENCODE3 hg19 archived low read length ENCFF912RCK bam bam alignments GRCh38 ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF827WPA/, /files/ENCFF643CGH/ 1812812872 ENCODE Processing Pipeline 43c36cb7604ae5381155266e792269f7 https://www.encodeproject.org/files/ENCFF912RCK/@@download/ENCFF912RCK.bam released s3://encode-public/2016/12/19/d79f5926-24ce-40f5-ae1f-bae9939d468a/ENCFF912RCK.bam ENCODE3 GRCh38 archived low read length ENCFF641HFO bam bam alignments hg19 ENCSR503BIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF827WPA/, /files/ENCFF807MUK/ 1813220588 ENCODE Processing Pipeline 94b3252a472b88fb6b0765544e9aa9ac https://www.encodeproject.org/files/ENCFF641HFO/@@download/ENCFF641HFO.bam released s3://encode-public/2016/12/19/4f4b7d0a-32c2-4e70-88ed-fa99f5cc6e07/ENCFF641HFO.bam ENCODE3 hg19 archived low read length ENCFF997BAK tagAlign tagAlign alignments hg19 ENCSR503BIB Control ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 203024425 Anshul Kundaje, Stanford 6a86dfb3ad97484e80c98b54b1506e12 https://www.encodeproject.org/files/ENCFF997BAK/@@download/ENCFF997BAK.tagAlign.gz archived s3://encode-public/2016/02/11/6b74c4e0-3da7-4bfb-9c10-4c9ac12c64e6/ENCFF997BAK.tagAlign.gz Lab custom hg19 archived low read length ENCFF669EED fastq fastq reads ENCSR276IVY Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 254557469 Kevin White, UChicago a314113803abdd89d476e0e9c1f1575d https://www.encodeproject.org/files/ENCFF669EED/@@download/ENCFF669EED.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF133ALD/ released s3://encode-public/2015/07/30/6c3b4e22-edb0-4547-a205-d63a0bc7e773/ENCFF669EED.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF861UZB bam bam alignments ce10 ENCSR276IVY Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF669EED/ 334543930 Kevin White, UChicago 4ff5d7bcd6ce3ad0bf9d0a4b6d07414c https://www.encodeproject.org/files/ENCFF861UZB/@@download/ENCFF861UZB.bam released s3://encode-public/2015/08/19/e4716fe8-36cb-41eb-a7c9-f09ca2e7f13a/ENCFF861UZB.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF998KIT bigWig bigWig signal of unique reads ce10 ENCSR276IVY Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF861UZB/ 10069805 Kevin White, UChicago ce6f76d1c04afd9b2f49f377096c1e99 https://www.encodeproject.org/files/ENCFF998KIT/@@download/ENCFF998KIT.bigWig released s3://encode-public/2015/10/02/d4229c29-3a97-4350-8ceb-11ceb0e04c90/ENCFF998KIT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF486TYW bigWig bigWig read-depth normalized signal ce10 ENCSR276IVY Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF861UZB/ 10008452 Kevin White, UChicago e43e0ae711cce641ddd04dcb9d25770a https://www.encodeproject.org/files/ENCFF486TYW/@@download/ENCFF486TYW.bigWig released s3://encode-public/2015/10/02/3486a542-8f56-48fc-b57a-0afcf97c1b39/ENCFF486TYW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF531WEU bam bam alignments ce11 ENCSR276IVY Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF669EED/ 334908685 Kevin White, UChicago 520157420105e55ac06d61ab361877a4 https://www.encodeproject.org/files/ENCFF531WEU/@@download/ENCFF531WEU.bam released s3://encode-public/2016/01/16/b3450744-c609-4aab-a3a3-8afaa2c17c59/ENCFF531WEU.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF022IKD bigWig bigWig signal of unique reads ce11 ENCSR276IVY Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF531WEU/ 10072401 Kevin White, UChicago b7e0fc10b9fd9bdb96e592dab30b0f75 https://www.encodeproject.org/files/ENCFF022IKD/@@download/ENCFF022IKD.bigWig released s3://encode-public/2016/02/03/6fa01ba2-1e21-4059-abc1-07450f7e2b28/ENCFF022IKD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF394AJQ bigWig bigWig read-depth normalized signal ce11 ENCSR276IVY Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF531WEU/ 10008779 Kevin White, UChicago 5e54c75f89e8d86b54b5e6b32c2152eb https://www.encodeproject.org/files/ENCFF394AJQ/@@download/ENCFF394AJQ.bigWig released s3://encode-public/2016/02/03/baa9b99a-0826-4c5b-8c1f-77f915b1a961/ENCFF394AJQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF523MNX fastq fastq reads ENCSR674LVV Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 108145293 Kevin White, UChicago 3bbe22c8d5d7f883ca287e60e9561ee8 https://www.encodeproject.org/files/ENCFF523MNX/@@download/ENCFF523MNX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF009YBG/ released s3://encode-public/2015/07/30/3159d010-89c2-482e-b31c-b2a112c8c329/ENCFF523MNX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF685NUT bam bam alignments ce10 ENCSR674LVV Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF523MNX/ 142406545 Kevin White, UChicago 32d535d2044dd49d163cc7819545b1f2 https://www.encodeproject.org/files/ENCFF685NUT/@@download/ENCFF685NUT.bam released s3://encode-public/2015/08/19/40879232-ff15-4b66-ac3d-da3ac42cdb4e/ENCFF685NUT.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF539PAT bigWig bigWig read-depth normalized signal ce10 ENCSR674LVV Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF685NUT/ 10026530 Kevin White, UChicago 8d4629b69a11208d9e242ad37ee96b2d https://www.encodeproject.org/files/ENCFF539PAT/@@download/ENCFF539PAT.bigWig released s3://encode-public/2015/10/02/2b983516-2400-475f-a365-a2e20a600f86/ENCFF539PAT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF186IFP bigWig bigWig signal of unique reads ce10 ENCSR674LVV Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF685NUT/ 10008118 Kevin White, UChicago 863cded445de6cd3a7f68efef08d7780 https://www.encodeproject.org/files/ENCFF186IFP/@@download/ENCFF186IFP.bigWig released s3://encode-public/2015/10/02/c7356e2a-0a38-4e2b-888c-1d67fa743952/ENCFF186IFP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF273VQX bam bam alignments ce11 ENCSR674LVV Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF523MNX/ 142572488 Kevin White, UChicago e9494b247fa894a50431776101edbaa9 https://www.encodeproject.org/files/ENCFF273VQX/@@download/ENCFF273VQX.bam released s3://encode-public/2016/01/16/9062d7ae-b64b-4bee-9d14-4512fc0e6825/ENCFF273VQX.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF349XKW bigWig bigWig signal of unique reads ce11 ENCSR674LVV Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': 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ENCSR674LVV Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF273VQX/ 10023565 Kevin White, UChicago 020d4ce7485cc337b5c2f1a719df86ef https://www.encodeproject.org/files/ENCFF605TXO/@@download/ENCFF605TXO.bigWig released s3://encode-public/2016/02/03/f2975f61-0165-4e82-ab38-7e8587203806/ENCFF605TXO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF052LLL fastq fastq reads ENCSR667YZB Control ChIP-seq /worm-donors/ENCDO513ATC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/186874/'], '@type': ['Target', 'Item'], 'name': 'K02D7.2-celegans', 'label': 'K02D7.2', '@id': '/targets/K02D7.2-celegans/', 'title': 'K02D7.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6c501a1b-53e6-44c3-a671-3fb297712a79', 'status': 'released'} ce11 IV 290378 325578 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 917267347 Kevin White, UChicago 372513233c35ac8ab6f99347dbfc09d0 https://www.encodeproject.org/files/ENCFF052LLL/@@download/ENCFF052LLL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/5c6fa3d3-cdf8-4b27-ab1e-6fd7458560d7/ENCFF052LLL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF079HKH bam bam alignments ce10 ENCSR667YZB Control ChIP-seq /worm-donors/ENCDO513ATC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/186874/'], '@type': ['Target', 'Item'], 'name': 'K02D7.2-celegans', 'label': 'K02D7.2', '@id': '/targets/K02D7.2-celegans/', 'title': 'K02D7.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6c501a1b-53e6-44c3-a671-3fb297712a79', 'status': 'released'} ce11 IV 290378 325578 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF052LLL/ 1202885339 Kevin White, UChicago 43f925756bcb1d3f79352b74f38764e6 https://www.encodeproject.org/files/ENCFF079HKH/@@download/ENCFF079HKH.bam released s3://encode-public/2017/10/06/44af07ad-0d40-4ebc-ae69-3a9eb5a27831/ENCFF079HKH.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF095ABO bam bam alignments ce11 ENCSR667YZB Control ChIP-seq /worm-donors/ENCDO513ATC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/186874/'], '@type': ['Target', 'Item'], 'name': 'K02D7.2-celegans', 'label': 'K02D7.2', '@id': '/targets/K02D7.2-celegans/', 'title': 'K02D7.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6c501a1b-53e6-44c3-a671-3fb297712a79', 'status': 'released'} ce11 IV 290378 325578 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF052LLL/ 1203877785 Kevin White, UChicago 7297336603232fc6844eb1f044160b55 https://www.encodeproject.org/files/ENCFF095ABO/@@download/ENCFF095ABO.bam released s3://encode-public/2017/10/06/165cdfd5-2c41-4793-947c-65b4a3744e9c/ENCFF095ABO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF597LAO bigWig bigWig read-depth normalized signal ce10 ENCSR667YZB Control ChIP-seq /worm-donors/ENCDO513ATC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/186874/'], '@type': ['Target', 'Item'], 'name': 'K02D7.2-celegans', 'label': 'K02D7.2', '@id': '/targets/K02D7.2-celegans/', 'title': 'K02D7.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6c501a1b-53e6-44c3-a671-3fb297712a79', 'status': 'released'} ce11 IV 290378 325578 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF079HKH/ 9984628 Kevin White, UChicago d23f2bc77c3dafa84c20b5ee7133e65e https://www.encodeproject.org/files/ENCFF597LAO/@@download/ENCFF597LAO.bigWig released s3://encode-public/2017/10/09/5e3e0fa6-cdb7-4055-848f-8dedddfddd95/ENCFF597LAO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF134DNA bigWig bigWig signal of unique reads ce10 ENCSR667YZB Control ChIP-seq /worm-donors/ENCDO513ATC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/186874/'], '@type': ['Target', 'Item'], 'name': 'K02D7.2-celegans', 'label': 'K02D7.2', '@id': '/targets/K02D7.2-celegans/', 'title': 'K02D7.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6c501a1b-53e6-44c3-a671-3fb297712a79', 'status': 'released'} ce11 IV 290378 325578 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF079HKH/ 10048483 Kevin White, UChicago ee6b2fbe0ec78c4d3f40c3c5e78407f0 https://www.encodeproject.org/files/ENCFF134DNA/@@download/ENCFF134DNA.bigWig released s3://encode-public/2017/10/09/fa90da4d-ba3b-4b58-b32f-b4003bf8e4fe/ENCFF134DNA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF938FKI bigWig bigWig signal of unique reads ce11 ENCSR667YZB Control ChIP-seq /worm-donors/ENCDO513ATC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/186874/'], '@type': ['Target', 'Item'], 'name': 'K02D7.2-celegans', 'label': 'K02D7.2', '@id': '/targets/K02D7.2-celegans/', 'title': 'K02D7.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6c501a1b-53e6-44c3-a671-3fb297712a79', 'status': 'released'} ce11 IV 290378 325578 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF095ABO/ 10046737 Kevin White, UChicago 4f0996800fdfd6696678d3b234780b9f https://www.encodeproject.org/files/ENCFF938FKI/@@download/ENCFF938FKI.bigWig released s3://encode-public/2017/10/09/63a88020-da7c-456b-8e1f-94977f6eea7b/ENCFF938FKI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF678GHY bigWig bigWig read-depth normalized signal ce11 ENCSR667YZB Control ChIP-seq /worm-donors/ENCDO513ATC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/186874/'], '@type': ['Target', 'Item'], 'name': 'K02D7.2-celegans', 'label': 'K02D7.2', '@id': '/targets/K02D7.2-celegans/', 'title': 'K02D7.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '6c501a1b-53e6-44c3-a671-3fb297712a79', 'status': 'released'} ce11 IV 290378 325578 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF095ABO/ 9982887 Kevin White, UChicago e322d6c83c50efaf465a21629dd5d734 https://www.encodeproject.org/files/ENCFF678GHY/@@download/ENCFF678GHY.bigWig released s3://encode-public/2017/10/09/54bd3add-de0e-4d55-a226-b5ced921422c/ENCFF678GHY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF911KYO fastq fastq reads ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 1014843377 Xiang-Dong Fu, UCSD f1c992dde14112a6d4b629fae52f6510 SRA:SRR6213583 https://www.encodeproject.org/files/ENCFF911KYO/@@download/ENCFF911KYO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/188521d6-b511-469d-b05f-3a8a182b3046/ENCFF911KYO.fastq.gz low read length ENCFF113ZAT fastq fastq reads ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1004448036 Xiang-Dong Fu, UCSD 326d06fd086ca724c4c59d7bf97ba966 SRA:SRR6213582 https://www.encodeproject.org/files/ENCFF113ZAT/@@download/ENCFF113ZAT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/aa5df2a4-dbd7-499c-b1ce-1133b64cee9c/ENCFF113ZAT.fastq.gz low read length ENCFF922JGL bam bam alignments hg19 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF113ZAT/, /files/ENCFF807MUK/ 1135638061 ENCODE Processing Pipeline 2864e8f575742cc524227fa4798e7083 https://www.encodeproject.org/files/ENCFF922JGL/@@download/ENCFF922JGL.bam released s3://encode-public/2016/02/26/268ed943-314f-4584-881c-efc106f41e4f/ENCFF922JGL.bam ENCODE3 hg19 archived low read length ENCFF851QFR bam bam alignments hg19 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF911KYO/, /files/ENCFF807MUK/ 1154658823 ENCODE Processing Pipeline d3cd561735dcb43efb3846ad249afaa3 https://www.encodeproject.org/files/ENCFF851QFR/@@download/ENCFF851QFR.bam released s3://encode-public/2016/02/26/7bf9c33f-e832-4c62-8c5b-97599b8d5466/ENCFF851QFR.bam ENCODE3 hg19 archived low read length ENCFF386XET bam bam unfiltered alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF113ZAT/, /files/ENCFF643CGH/ 1483991983 ENCODE Processing Pipeline fc617c484599e792ac4744ca9df14625 https://www.encodeproject.org/files/ENCFF386XET/@@download/ENCFF386XET.bam released s3://encode-public/2016/05/06/9163a243-3598-4dd8-93c3-bd0366fa51f6/ENCFF386XET.bam ENCODE3 GRCh38 archived low read length ENCFF658TYW bam bam unfiltered alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF911KYO/, /files/ENCFF643CGH/ 1492001866 ENCODE Processing Pipeline 2ab57bba4b670d7865b5629713a0f529 https://www.encodeproject.org/files/ENCFF658TYW/@@download/ENCFF658TYW.bam released s3://encode-public/2016/05/06/9f3dd9e1-ce60-4a50-9f42-df9218f0e4cd/ENCFF658TYW.bam ENCODE3 GRCh38 archived low read length ENCFF438FAN bam bam alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF113ZAT/, /files/ENCFF643CGH/ 1134696199 ENCODE Processing Pipeline 00d730e0b8fac6da9ceaae57a0eb523d https://www.encodeproject.org/files/ENCFF438FAN/@@download/ENCFF438FAN.bam released s3://encode-public/2016/05/06/fe50aa28-f0a2-477f-b055-b465682c07a0/ENCFF438FAN.bam ENCODE3 GRCh38 archived low read length ENCFF102RVF bam bam alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF911KYO/, /files/ENCFF643CGH/ 1153676769 ENCODE Processing Pipeline 63a77c318a453fbb9ad250abd754a9ef https://www.encodeproject.org/files/ENCFF102RVF/@@download/ENCFF102RVF.bam released s3://encode-public/2016/05/06/92929083-0627-4408-912d-088ce293388a/ENCFF102RVF.bam ENCODE3 GRCh38 archived low read length ENCFF574SSW bam bam unfiltered alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF911KYO/ 1471305502 ENCODE Processing Pipeline d052b1feb5d17468f1183e5d93cd7a51 https://www.encodeproject.org/files/ENCFF574SSW/@@download/ENCFF574SSW.bam released s3://encode-public/2020/10/27/72a9f557-5aaf-4851-a248-d586ce89b0e8/ENCFF574SSW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF750VAF bam bam alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF113ZAT/ 1177447611 ENCODE Processing Pipeline 3f98820719ecf02839d17ed7fa8849b8 https://www.encodeproject.org/files/ENCFF750VAF/@@download/ENCFF750VAF.bam released s3://encode-public/2020/10/27/4551172f-af87-4aed-a45d-a7a660f0c8f5/ENCFF750VAF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF122XBR bam bam unfiltered alignments hg19 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF113ZAT/, /files/ENCFF807MUK/ 1477465104 ENCODE Processing Pipeline 8c902703952b10567a0370125b70272a https://www.encodeproject.org/files/ENCFF122XBR/@@download/ENCFF122XBR.bam released s3://encode-public/2018/01/12/79fe45d4-56a5-40de-a833-0cebfe45315e/ENCFF122XBR.bam ENCODE3 hg19 archived low read length ENCFF790QEH bam bam unfiltered alignments hg19 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF911KYO/, /files/ENCFF807MUK/ 1485232209 ENCODE Processing Pipeline 2097ac868c174844244482279e091663 https://www.encodeproject.org/files/ENCFF790QEH/@@download/ENCFF790QEH.bam released s3://encode-public/2018/01/12/8b4fbdf4-5214-4b8a-ae3a-a8ca85007b06/ENCFF790QEH.bam ENCODE3 hg19 archived low read length ENCFF144RDT bam bam unfiltered alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF113ZAT/ 1461544152 ENCODE Processing Pipeline ac4cb45f3e8684c0cd67caa52e9e845a https://www.encodeproject.org/files/ENCFF144RDT/@@download/ENCFF144RDT.bam released s3://encode-public/2020/10/27/25dbabad-1aac-4c5f-9e6a-4ba1a07a855f/ENCFF144RDT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF178FKJ bam bam alignments GRCh38 ENCSR457PLC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF911KYO/ 1191722596 ENCODE Processing Pipeline 694ab77b084eadb0e2f4132e82c2acef https://www.encodeproject.org/files/ENCFF178FKJ/@@download/ENCFF178FKJ.bam released s3://encode-public/2020/10/27/f25ec07e-f1ff-47c2-8ce2-c2eff5fa1206/ENCFF178FKJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF933WKD fastq fastq reads ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 3 3_1 32 single-ended 180936953 Michael Snyder, Stanford 11f1895fe860137be5a571ec2fc4c65c https://www.encodeproject.org/files/ENCFF933WKD/@@download/ENCFF933WKD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/be6c8d04-49d7-4279-8008-37d32562b0f9/ENCFF933WKD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF225HHM fastq fastq reads ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 142401351 Michael Snyder, Stanford 15cc4c92cc0ff17d5a4fa988be0972d1 https://www.encodeproject.org/files/ENCFF225HHM/@@download/ENCFF225HHM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/f45b036e-884f-40cb-873f-fb7e541b94fa/ENCFF225HHM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF029SJR bam bam alignments ce11 ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 1, 3 1_1, 3_1 32 /files/ENCFF225HHM/, /files/ENCFF933WKD/, /files/ENCFF586MOL/ 423317730 Kevin White, UChicago d0116867abf10d766480f2143433c9d7 https://www.encodeproject.org/files/ENCFF029SJR/@@download/ENCFF029SJR.bam released s3://encode-public/2017/10/31/85355acd-4a8a-432e-b004-70aafdf11fb4/ENCFF029SJR.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF409AJE bam bam alignments ce10 ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 1, 3 1_1, 3_1 32 /files/ENCFF225HHM/, /files/ENCFF933WKD/, /files/ENCFF987UMF/ 422853947 Kevin White, UChicago eadfb8e7103cdda37902652f031d1e0c https://www.encodeproject.org/files/ENCFF409AJE/@@download/ENCFF409AJE.bam released s3://encode-public/2017/10/31/950af11f-b974-4ac8-bed2-41fe90002435/ENCFF409AJE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF477KMC bigWig bigWig signal of unique reads ce11 ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 1, 3 1_1, 3_1 /files/ENCFF029SJR/ 10011236 Kevin White, UChicago 6bbe67fe22592295f647a9fd2fb89771 https://www.encodeproject.org/files/ENCFF477KMC/@@download/ENCFF477KMC.bigWig released s3://encode-public/2017/10/31/19a07782-2e9f-465e-bbc9-47d6eaa18e86/ENCFF477KMC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF408NRI bigWig bigWig signal of unique reads ce10 ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 1, 3 1_1, 3_1 /files/ENCFF409AJE/ 10019034 Kevin White, UChicago d4c342f1e8c36b9eb399066623779ccf https://www.encodeproject.org/files/ENCFF408NRI/@@download/ENCFF408NRI.bigWig released s3://encode-public/2017/10/31/f62b24ce-e02e-430c-ba04-c9dfd3830fb6/ENCFF408NRI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF963UVS bigWig bigWig read-depth normalized signal ce11 ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 1, 3 1_1, 3_1 /files/ENCFF029SJR/ 9961489 Kevin White, UChicago dc827abdb2ffbba0ec48c322ba84f153 https://www.encodeproject.org/files/ENCFF963UVS/@@download/ENCFF963UVS.bigWig released s3://encode-public/2017/10/31/f3ca54c3-f499-4c90-a856-d0e295c5449b/ENCFF963UVS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF719OAC bigWig bigWig read-depth normalized signal ce10 ENCSR013ISV Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 150-350 1, 3 1_1, 3_1 /files/ENCFF409AJE/ 9973650 Kevin White, UChicago 5961c3d0700a16884fd52c8ef8a20e04 https://www.encodeproject.org/files/ENCFF719OAC/@@download/ENCFF719OAC.bigWig released s3://encode-public/2017/10/31/35c49fe2-1ffd-4372-a236-a843af842545/ENCFF719OAC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF665HEV fastq fastq reads ENCSR744SMV Control ChIP-seq /human-donors/ENCDO689YDN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF638KDF/ 3321325596 Michael Snyder, Stanford ef2d779cfd437e62902dac9523146659 https://www.encodeproject.org/files/ENCFF665HEV/@@download/ENCFF665HEV.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/29/6b268f77-0ecc-4eed-b69f-83df107ad95a/ENCFF665HEV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF638KDF fastq fastq reads ENCSR744SMV Control ChIP-seq /human-donors/ENCDO689YDN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF665HEV/ 3372964501 Michael Snyder, Stanford 301b04539b92e05ad188d207abe58c63 https://www.encodeproject.org/files/ENCFF638KDF/@@download/ENCFF638KDF.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/29/5fd2c851-9b36-4910-a676-a93dc69d2b9e/ENCFF638KDF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF791INM bam bam unfiltered alignments GRCh38 ENCSR744SMV Control ChIP-seq /human-donors/ENCDO689YDN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF638KDF/, /files/ENCFF110MCL/, /files/ENCFF665HEV/ 5723307752 ENCODE Processing Pipeline a7b921fd4dd8d160e08d77ba5ec80127 https://www.encodeproject.org/files/ENCFF791INM/@@download/ENCFF791INM.bam released s3://encode-public/2020/10/14/5129a0e6-e49f-4e2a-becb-bd3f0e892e2a/ENCFF791INM.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF107EKG bam bam alignments GRCh38 ENCSR744SMV Control ChIP-seq /human-donors/ENCDO689YDN/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF638KDF/, /files/ENCFF110MCL/, /files/ENCFF665HEV/ 3495740077 ENCODE Processing Pipeline 98afedd17a424930891e029bb6d84932 https://www.encodeproject.org/files/ENCFF107EKG/@@download/ENCFF107EKG.bam released s3://encode-public/2020/10/14/58461d62-68e1-464f-aa56-b073fe72a3b5/ENCFF107EKG.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF987TTG fastq fastq reads ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 196626242 Michael Snyder, Stanford 186203e5af9208b519bef345570a9ddb https://www.encodeproject.org/files/ENCFF987TTG/@@download/ENCFF987TTG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/18/b3328801-189b-40c7-8e27-5e3ae8646e86/ENCFF987TTG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF648MRN fastq fastq reads ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 173750493 Michael Snyder, Stanford a3d11a40bb8ceba9268c44331447dfbd https://www.encodeproject.org/files/ENCFF648MRN/@@download/ENCFF648MRN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/194a9c5e-0b74-42cb-9120-4e5dc7c780a0/ENCFF648MRN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF632VRG bam bam alignments ce10 ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF648MRN/, /files/ENCFF987TTG/, /files/ENCFF987UMF/ 445879633 Kevin White, UChicago 690dba0d12fb2606030a4d3833520523 https://www.encodeproject.org/files/ENCFF632VRG/@@download/ENCFF632VRG.bam released s3://encode-public/2017/04/27/a7b12269-3bc7-47ae-9593-2fc22eb71b1c/ENCFF632VRG.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF501WVK bam bam alignments ce11 ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF648MRN/, /files/ENCFF987TTG/, /files/ENCFF586MOL/ 446285177 Kevin White, UChicago 76827cc36ad098fa007ec50ce00a3052 https://www.encodeproject.org/files/ENCFF501WVK/@@download/ENCFF501WVK.bam released s3://encode-public/2017/04/27/bc02eff1-3cec-4ed0-9216-f24f06325e27/ENCFF501WVK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF237DET bigWig bigWig signal of unique reads ce10 ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF632VRG/ 10042656 Kevin White, UChicago e5e0b095d2bb428e19338978b6f1c6cf https://www.encodeproject.org/files/ENCFF237DET/@@download/ENCFF237DET.bigWig released s3://encode-public/2017/04/29/7276acf1-3fce-49b0-ae41-665a77f34419/ENCFF237DET.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF731FIQ bigWig bigWig read-depth normalized signal ce10 ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF632VRG/ 10004382 Kevin White, UChicago 88a6beb2d636ac65a59c2f3c4a04f1ae https://www.encodeproject.org/files/ENCFF731FIQ/@@download/ENCFF731FIQ.bigWig released s3://encode-public/2017/04/29/83e04ae5-5adb-4a08-8364-140169d44f81/ENCFF731FIQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF470FFQ bigWig bigWig signal of unique reads ce11 ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF501WVK/ 10038998 Kevin White, UChicago 366e1348be823743db5ebd5f6c73c212 https://www.encodeproject.org/files/ENCFF470FFQ/@@download/ENCFF470FFQ.bigWig released s3://encode-public/2017/04/29/c0662d35-4254-478a-a0dd-358df271e116/ENCFF470FFQ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF538SIU bigWig bigWig read-depth normalized signal ce11 ENCSR472KPY Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF501WVK/ 10005914 Kevin White, UChicago ba2d905f088b85e3633f114435b23fa6 https://www.encodeproject.org/files/ENCFF538SIU/@@download/ENCFF538SIU.bigWig released s3://encode-public/2017/04/29/1c35de17-05a2-4d62-b5b8-c722d4f2181e/ENCFF538SIU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF649CUQ tagAlign tagAlign alignments hg19 ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF094GYG/ 90720004 Anshul Kundaje, Stanford 23f90b0df95155c6a4898f9a1d8f0e1a https://www.encodeproject.org/files/ENCFF649CUQ/@@download/ENCFF649CUQ.tagAlign.gz archived s3://encode-public/2016/03/30/3a3c1236-5477-44d0-ba43-e6ddbc96695f/ENCFF649CUQ.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF094GYG fastq fastq reads ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 761373636 Zhiping Weng, UMass f4c035bdba15be2e2977853c86af442d SRA:SRR067976 https://www.encodeproject.org/files/ENCFF094GYG/@@download/ENCFF094GYG.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/f230bdeb-cb07-4f05-abbe-acd40f34c73f/ENCFF094GYG.fastq.gz low read depth, low read length ENCFF344WAX bam bam unfiltered alignments hg19 ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF094GYG/ 960484837 ENCODE Processing Pipeline 36626bf0f1e5c9244a878c99eed212bf https://www.encodeproject.org/files/ENCFF344WAX/@@download/ENCFF344WAX.bam released s3://encode-public/2016/12/19/8f8294d4-016a-46ea-bb6d-3c2c2e3a5c8f/ENCFF344WAX.bam ENCODE3 hg19 archived low read depth, low read length ENCFF798GRO bam bam alignments hg19 ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF094GYG/ 467810789 ENCODE Processing Pipeline 41e85ab0017a3bd2d98b97cabef3800f https://www.encodeproject.org/files/ENCFF798GRO/@@download/ENCFF798GRO.bam released s3://encode-public/2016/12/19/32b8d9e4-a096-4e3c-94c4-a2c558463cd4/ENCFF798GRO.bam ENCODE3 hg19 archived low read depth, low read length ENCFF346BFW bam bam unfiltered alignments GRCh38 ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF094GYG/ 964039049 ENCODE Processing Pipeline 25ed3d90dd577d42244cb33534a763a8 https://www.encodeproject.org/files/ENCFF346BFW/@@download/ENCFF346BFW.bam released s3://encode-public/2016/12/19/d3c482b5-eef8-4d97-9640-f169dd0857c3/ENCFF346BFW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF649HPW bam bam alignments GRCh38 ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF094GYG/ 467671296 ENCODE Processing Pipeline bb9230f243f0e5651b37224c24ddfa6a https://www.encodeproject.org/files/ENCFF649HPW/@@download/ENCFF649HPW.bam released s3://encode-public/2016/12/19/0bb4eb9c-9079-4cce-9b1a-cb64ed308ff8/ENCFF649HPW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF736CXZ bam bam unfiltered alignments GRCh38 ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF094GYG/, /files/ENCFF110MCL/ 928360787 ENCODE Processing Pipeline c68d02d6a469000834e2a2804c2298bd https://www.encodeproject.org/files/ENCFF736CXZ/@@download/ENCFF736CXZ.bam released s3://encode-public/2020/11/13/7de32965-25d1-4a1c-be46-bc7b563a3e51/ENCFF736CXZ.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF529CGD bam bam alignments GRCh38 ENCSR170FFQ Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF094GYG/, /files/ENCFF110MCL/ 533861969 ENCODE Processing Pipeline c52c9b3fed23b6ccd4293ae4cf537d55 https://www.encodeproject.org/files/ENCFF529CGD/@@download/ENCFF529CGD.bam released s3://encode-public/2020/11/13/c8a32014-5c2b-42b6-b6c6-47b2e9ab5dab/ENCFF529CGD.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF377CRJ fastq fastq reads ENCSR520CCE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1574'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7730/', '/genes/100529215/'], '@type': ['Target', 'Item'], 'name': 'ZNF177-human', 'label': 'ZNF177', '@id': '/targets/ZNF177-human/', 'title': 'ZNF177 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6250ddf-c51e-485c-81c6-4f3ccdff32c7', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF690JCV/ 3250840160 Michael Snyder, Stanford 939d9c74f7b7437c2adf533b5b1699d2 SRA:SRR14832591 https://www.encodeproject.org/files/ENCFF377CRJ/@@download/ENCFF377CRJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/08/212e9d33-70f2-499c-8649-b31e469a1698/ENCFF377CRJ.fastq.gz mild to moderate bottlenecking ENCFF690JCV fastq fastq reads ENCSR520CCE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1574'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7730/', '/genes/100529215/'], '@type': ['Target', 'Item'], 'name': 'ZNF177-human', 'label': 'ZNF177', '@id': '/targets/ZNF177-human/', 'title': 'ZNF177 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6250ddf-c51e-485c-81c6-4f3ccdff32c7', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF377CRJ/ 3475615342 Michael Snyder, Stanford e398ec8d402bf74b1ead6ad17c6953c6 SRA:SRR14832591 https://www.encodeproject.org/files/ENCFF690JCV/@@download/ENCFF690JCV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/08/4c674a90-bbaa-4715-a7f2-82648c77b0c9/ENCFF690JCV.fastq.gz mild to moderate bottlenecking ENCFF428HBH bam bam alignments GRCh38 ENCSR520CCE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1574'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7730/', '/genes/100529215/'], '@type': ['Target', 'Item'], 'name': 'ZNF177-human', 'label': 'ZNF177', '@id': '/targets/ZNF177-human/', 'title': 'ZNF177 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6250ddf-c51e-485c-81c6-4f3ccdff32c7', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF690JCV/, /files/ENCFF110MCL/, /files/ENCFF377CRJ/ 5265080026 ENCODE Processing Pipeline 55ada5322583b8f09e26eb131ecb3de3 https://www.encodeproject.org/files/ENCFF428HBH/@@download/ENCFF428HBH.bam released s3://encode-public/2020/10/14/3d610b13-6beb-458c-834d-fbfef23bdbf7/ENCFF428HBH.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF935UFX bam bam unfiltered alignments GRCh38 ENCSR520CCE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1574'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7730/', '/genes/100529215/'], '@type': ['Target', 'Item'], 'name': 'ZNF177-human', 'label': 'ZNF177', '@id': '/targets/ZNF177-human/', 'title': 'ZNF177 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6250ddf-c51e-485c-81c6-4f3ccdff32c7', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF690JCV/, /files/ENCFF110MCL/, /files/ENCFF377CRJ/ 6991549272 ENCODE Processing Pipeline 316d60cd9b43d6a99a490ee6dc5d1ead https://www.encodeproject.org/files/ENCFF935UFX/@@download/ENCFF935UFX.bam released s3://encode-public/2020/10/14/69388a75-7c8c-4254-9028-2e59707643ce/ENCFF935UFX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF212CIG fastq fastq reads ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 88394971 Michael Snyder, Stanford 44c862d8646f96d60c9b72331ed0453d https://www.encodeproject.org/files/ENCFF212CIG/@@download/ENCFF212CIG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cdc778e1-4809-4417-9cf8-6156bc134ea0/ENCFF212CIG.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF383PEY fastq fastq reads ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 102568827 Michael Snyder, Stanford fa66a6da2c21e34337b6158d8c67986e https://www.encodeproject.org/files/ENCFF383PEY/@@download/ENCFF383PEY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e612e79b-f6fc-4ba8-bdbf-fdcd510f96fe/ENCFF383PEY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF123VLW bam bam alignments ce10 ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF212CIG/, /files/ENCFF383PEY/, /files/ENCFF987UMF/ 229986501 Kevin White, UChicago e99ed58f5a1cffc31d72a0ee5bc50e96 https://www.encodeproject.org/files/ENCFF123VLW/@@download/ENCFF123VLW.bam released s3://encode-public/2016/10/18/0e836997-7c81-4cf8-bfe9-14600eb099c8/ENCFF123VLW.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF348ZCA bam bam alignments ce11 ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF212CIG/, /files/ENCFF383PEY/, /files/ENCFF586MOL/ 230186861 Kevin White, UChicago 59afe9fa61d9df91500e055c129e2916 https://www.encodeproject.org/files/ENCFF348ZCA/@@download/ENCFF348ZCA.bam released s3://encode-public/2016/10/18/b64b06af-650e-4a03-8677-9e88229a8427/ENCFF348ZCA.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF675UUN bigWig bigWig read-depth normalized signal ce10 ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF123VLW/ 9979148 Kevin White, UChicago 97a5a8f709a3466616ee0ba19bf77235 https://www.encodeproject.org/files/ENCFF675UUN/@@download/ENCFF675UUN.bigWig released s3://encode-public/2016/10/20/22006709-2fdc-4e39-beeb-85d2dbd57df1/ENCFF675UUN.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF607ATR bigWig bigWig signal of unique reads ce10 ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF123VLW/ 9977548 Kevin White, UChicago 37e8532e126796ae2a6ff11a5472955b https://www.encodeproject.org/files/ENCFF607ATR/@@download/ENCFF607ATR.bigWig released s3://encode-public/2016/10/20/dbac7af6-ab87-4448-9f83-06b52a57fb99/ENCFF607ATR.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF895BQC bigWig bigWig read-depth normalized signal ce11 ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF348ZCA/ 9978867 Kevin White, UChicago a73361977648b4f0cb41095e476d5c5d https://www.encodeproject.org/files/ENCFF895BQC/@@download/ENCFF895BQC.bigWig released s3://encode-public/2016/10/20/47394e89-398d-4387-be5c-e94fea291f4a/ENCFF895BQC.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF424TIN bigWig bigWig signal of unique reads ce11 ENCSR489QJI Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF348ZCA/ 9972729 Kevin White, UChicago 4dafcca4e0b1cb946e86643aaa696612 https://www.encodeproject.org/files/ENCFF424TIN/@@download/ENCFF424TIN.bigWig released s3://encode-public/2016/10/20/804cba17-8083-4335-9bbb-7e2024dba74d/ENCFF424TIN.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF026MQF bam bam unfiltered alignments hg19 ENCSR019XRC Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF086CFB/, /files/ENCFF807MUK/ 1805939543 ENCODE Processing Pipeline 3306c59310e2f99bc66a766bdb183323 https://www.encodeproject.org/files/ENCFF026MQF/@@download/ENCFF026MQF.bam released s3://encode-public/2018/02/21/4f86500b-9e8f-4775-b98c-16d66b91184d/ENCFF026MQF.bam ENCODE3 hg19 archived ENCFF086CFB fastq fastq reads ENCSR019XRC Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1596031356 Richard Myers, HAIB f93d8dc23e9967045b56d7f2c5db1b28 SRA:SRR5331645 https://www.encodeproject.org/files/ENCFF086CFB/@@download/ENCFF086CFB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/ddea0de9-7761-4f66-ab1b-330907564bb4/ENCFF086CFB.fastq.gz ENCFF321UJV bam bam alignments hg19 ENCSR019XRC Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF086CFB/, /files/ENCFF807MUK/ 1382777554 ENCODE Processing Pipeline e16874ac70d24dfe68b7bc166964c188 https://www.encodeproject.org/files/ENCFF321UJV/@@download/ENCFF321UJV.bam released s3://encode-public/2016/01/15/07cdf5e7-d7a3-427b-86dc-579c8ef13148/ENCFF321UJV.bam ENCODE3 hg19 archived ENCFF558ZSN bam bam unfiltered alignments GRCh38 ENCSR019XRC Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF086CFB/, /files/ENCFF643CGH/ 1817503699 ENCODE Processing Pipeline 99359065d53bcc7aded2ab48d60b1ac3 https://www.encodeproject.org/files/ENCFF558ZSN/@@download/ENCFF558ZSN.bam released s3://encode-public/2016/05/06/1b27bda8-b142-4971-8c87-fdfc23c7741b/ENCFF558ZSN.bam ENCODE3 GRCh38 archived ENCFF610PNU bam bam alignments GRCh38 ENCSR019XRC Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF086CFB/, /files/ENCFF643CGH/ 1383318286 ENCODE Processing Pipeline 0e1c68c4951373c48038496b75d1b695 https://www.encodeproject.org/files/ENCFF610PNU/@@download/ENCFF610PNU.bam released s3://encode-public/2016/05/06/046f598e-ac44-4797-ab7d-c98438159f02/ENCFF610PNU.bam ENCODE3 GRCh38 archived ENCFF237ZXH bam bam unfiltered alignments GRCh38 ENCSR019XRC Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF086CFB/ 1781073871 ENCODE Processing Pipeline f5bd00126bdde803f7205cc1b47befa7 https://www.encodeproject.org/files/ENCFF237ZXH/@@download/ENCFF237ZXH.bam released s3://encode-public/2020/06/06/ab37953b-f472-4c66-ac70-2de39a0cfda2/ENCFF237ZXH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF876ARH bam bam alignments GRCh38 ENCSR019XRC Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF086CFB/ 1439633228 ENCODE Processing Pipeline 029f7f0766640af17a8ffd907ed98596 https://www.encodeproject.org/files/ENCFF876ARH/@@download/ENCFF876ARH.bam released s3://encode-public/2020/06/06/bd65cf39-5856-46d5-881d-7d7ff6fc72f9/ENCFF876ARH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF579RVO fastq fastq reads ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 169289617 Michael Snyder, Stanford 4abfde5710d7622581e8ccbcbffe9474 https://www.encodeproject.org/files/ENCFF579RVO/@@download/ENCFF579RVO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e213453c-56db-413d-b147-d6d55db9d966/ENCFF579RVO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF446WZG fastq fastq reads ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 169572214 Michael Snyder, Stanford 19de03e152b80b87018fb15731c7b5a3 https://www.encodeproject.org/files/ENCFF446WZG/@@download/ENCFF446WZG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/3f29773f-6eca-4ab2-9126-d7bbc1f7f21a/ENCFF446WZG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF513KMB bigWig bigWig read-depth normalized signal ce10 ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF336LXZ/ 9981109 Kevin White, UChicago 5884c446deab05ce699b8871eb0cba7a https://www.encodeproject.org/files/ENCFF513KMB/@@download/ENCFF513KMB.bigWig released s3://encode-public/2018/01/05/6b1be8c1-0786-43af-9065-f679735821c3/ENCFF513KMB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF336LXZ bam bam alignments ce10 ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF579RVO/, /files/ENCFF446WZG/, /files/ENCFF987UMF/ 411170678 Kevin White, UChicago 6b5eaf4b77d3b9effab61aa686b3939d https://www.encodeproject.org/files/ENCFF336LXZ/@@download/ENCFF336LXZ.bam released s3://encode-public/2018/01/05/225f89bb-0606-4bea-ab4e-4d22a243a8ba/ENCFF336LXZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF174YOF bigWig bigWig read-depth normalized signal ce11 ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF203QSJ/ 9980366 Kevin White, UChicago bbca78cf1b2543d5cd8f718242259570 https://www.encodeproject.org/files/ENCFF174YOF/@@download/ENCFF174YOF.bigWig released s3://encode-public/2018/01/05/fde6794e-378b-4728-9332-9d2babf4ba03/ENCFF174YOF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF203QSJ bam bam alignments ce11 ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF579RVO/, /files/ENCFF446WZG/, /files/ENCFF586MOL/ 411561617 Kevin White, UChicago 56aa103b47de507f1b3d8b62977a81a0 https://www.encodeproject.org/files/ENCFF203QSJ/@@download/ENCFF203QSJ.bam released s3://encode-public/2018/01/05/d10a4d66-20ce-42e2-a472-ac0efd363db0/ENCFF203QSJ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF591CBP bigWig bigWig signal of unique reads ce11 ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF203QSJ/ 10035814 Kevin White, UChicago 6c035de14cfa0fb6e4434e13c96dcc25 https://www.encodeproject.org/files/ENCFF591CBP/@@download/ENCFF591CBP.bigWig released s3://encode-public/2018/01/05/7b152abc-a585-40fd-a734-09699cad735d/ENCFF591CBP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF759WMH bigWig bigWig signal of unique reads ce10 ENCSR149QCW Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF336LXZ/ 10038274 Kevin White, UChicago 32393ec94adf17a2e92932eeda395150 https://www.encodeproject.org/files/ENCFF759WMH/@@download/ENCFF759WMH.bigWig released s3://encode-public/2018/01/05/3bb3c8f2-05d3-4a11-9ae5-4c3f01251f93/ENCFF759WMH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF740SWJ fastq fastq reads ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 591744402 Kevin White, UChicago 8b98c22e05b879978066cb4522ec7d8d https://www.encodeproject.org/files/ENCFF740SWJ/@@download/ENCFF740SWJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/6ff0b9c0-4633-486f-b320-870277dd494d/ENCFF740SWJ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF414ZEW fastq fastq reads ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 3 3_1 50 single-ended 674650650 Kevin White, UChicago 95123800db8d34f1b468640eb3c9b01e https://www.encodeproject.org/files/ENCFF414ZEW/@@download/ENCFF414ZEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/325c7a54-0363-498e-80cb-ff60c868ab9e/ENCFF414ZEW.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF173JXI bam bam alignments ce10 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF740SWJ/ 763552926 Kevin White, UChicago ced0284f9012433efb4c438bb88918b5 https://www.encodeproject.org/files/ENCFF173JXI/@@download/ENCFF173JXI.bam released s3://encode-public/2017/10/06/97c3042b-0b24-4d5d-b664-38b789a537c9/ENCFF173JXI.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF830LHX bam bam alignments ce10 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 3 3_1 50 /files/ENCFF987UMF/, /files/ENCFF414ZEW/ 884887853 Kevin White, UChicago 39ea5b60ebcee16b355559bd63a828b8 https://www.encodeproject.org/files/ENCFF830LHX/@@download/ENCFF830LHX.bam released s3://encode-public/2017/10/06/81e0a3ec-4964-4063-875a-cc830804bd6d/ENCFF830LHX.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF764DIG bam bam alignments ce11 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF740SWJ/ 764203188 Kevin White, UChicago 9ca202e5ccfe4d0f9e19c12435655d10 https://www.encodeproject.org/files/ENCFF764DIG/@@download/ENCFF764DIG.bam released s3://encode-public/2017/10/07/5c68d721-f5bb-41b3-813a-0d09a026f7d5/ENCFF764DIG.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF576BZI bam bam alignments ce11 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 3 3_1 50 /files/ENCFF586MOL/, /files/ENCFF414ZEW/ 885610667 Kevin White, UChicago 685c40ee038873bed7802d7f91779c0a https://www.encodeproject.org/files/ENCFF576BZI/@@download/ENCFF576BZI.bam released s3://encode-public/2017/10/07/09336762-81f7-473b-ae03-b7062ff03d8d/ENCFF576BZI.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF309KIC bigWig bigWig read-depth normalized signal ce10 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF173JXI/, /files/ENCFF830LHX/ 9930480 Kevin White, UChicago b627e06e2f2a809356e737ccec4e9657 https://www.encodeproject.org/files/ENCFF309KIC/@@download/ENCFF309KIC.bigWig released s3://encode-public/2017/10/09/25912723-54c3-49bb-a3f2-d73f7804ca3c/ENCFF309KIC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF577TDY bigWig bigWig signal of unique reads ce10 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF173JXI/, /files/ENCFF830LHX/ 9966030 Kevin White, UChicago e92660229a22d716147b81fa6d479c7b https://www.encodeproject.org/files/ENCFF577TDY/@@download/ENCFF577TDY.bigWig released s3://encode-public/2017/10/09/fe2096f5-97bb-424b-9dfd-230b5a80dddb/ENCFF577TDY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF601VUN bigWig bigWig read-depth normalized signal ce11 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF764DIG/, /files/ENCFF576BZI/ 9935066 Kevin White, UChicago 33cccc559d27aab5b9614bc7759091db https://www.encodeproject.org/files/ENCFF601VUN/@@download/ENCFF601VUN.bigWig released s3://encode-public/2017/10/09/e4749e92-13ca-40e5-995f-e6fda5e700c0/ENCFF601VUN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF587INL bigWig bigWig signal of unique reads ce11 ENCSR223SII Control ChIP-seq /worm-donors/ENCDO316XRQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180410/'], '@type': ['Target', 'Item'], 'name': 'F13C5.2-celegans', 'label': 'F13C5.2', '@id': '/targets/F13C5.2-celegans/', 'title': 'F13C5.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7073325f-1064-45b1-8918-db1918108917', 'status': 'released'} ce11 X 571613 608473 DNA 2017-11-22 modERN sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF764DIG/, /files/ENCFF576BZI/ 9961575 Kevin White, UChicago 2275d405b8097c30abb76c64e41f5e76 https://www.encodeproject.org/files/ENCFF587INL/@@download/ENCFF587INL.bigWig released s3://encode-public/2017/10/09/cc7c86cb-927a-46f8-a1cf-4fd4f59d2822/ENCFF587INL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF224NOP bam bam unfiltered alignments hg19 ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF144MPP/, /files/ENCFF299IIG/, /files/ENCFF807MUK/ 2113199695 ENCODE Processing Pipeline 16d62ae1cea98048a4bf3c1dcf3f14f3 https://www.encodeproject.org/files/ENCFF224NOP/@@download/ENCFF224NOP.bam released s3://encode-public/2018/02/22/bac4da40-0401-4355-a5b6-04ad098ca4c8/ENCFF224NOP.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF299IIG fastq fastq reads ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 879143024 Kevin White, UChicago 29cb1f443eedb0ab7311c464c9021eb7 SRA:SRR6213968 https://www.encodeproject.org/files/ENCFF299IIG/@@download/ENCFF299IIG.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released s3://encode-public/2016/03/14/7d6b7db5-0b6c-4241-a3de-7ea54b97e0f1/ENCFF299IIG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF144MPP fastq fastq reads ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1147689356 Kevin White, UChicago 651959ea59b0d8c1feed9d0e267cbab7 SRA:SRR6213969 https://www.encodeproject.org/files/ENCFF144MPP/@@download/ENCFF144MPP.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released s3://encode-public/2016/03/26/97407f85-96a0-4c07-843c-7afb47032404/ENCFF144MPP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF359SKD bam bam alignments hg19 ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF144MPP/, /files/ENCFF299IIG/, /files/ENCFF807MUK/ 1567728705 ENCODE Processing Pipeline 413e67fbe6a6e16ee77cdd0381f6d2ca https://www.encodeproject.org/files/ENCFF359SKD/@@download/ENCFF359SKD.bam released s3://encode-public/2016/04/23/420c7f14-cbb5-440b-ae0e-f3f445247775/ENCFF359SKD.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF789BWF bam bam unfiltered alignments GRCh38 ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF144MPP/, /files/ENCFF299IIG/, /files/ENCFF643CGH/ 2120253882 ENCODE Processing Pipeline 97e53912f70f0906c826bd56ebe206a8 https://www.encodeproject.org/files/ENCFF789BWF/@@download/ENCFF789BWF.bam released s3://encode-public/2016/05/06/696a4874-dfeb-4f17-8de7-0be2eafb0a16/ENCFF789BWF.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF623HUN bam bam alignments GRCh38 ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF144MPP/, /files/ENCFF299IIG/, /files/ENCFF643CGH/ 1567104721 ENCODE Processing Pipeline f2790400da68c0c563cdb111ef189ca1 https://www.encodeproject.org/files/ENCFF623HUN/@@download/ENCFF623HUN.bam released s3://encode-public/2016/05/06/130558b6-1850-40c9-9abf-30bc2812cb3b/ENCFF623HUN.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF612KGJ bam bam unfiltered alignments GRCh38 ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF299IIG/, /files/ENCFF144MPP/, /files/ENCFF110MCL/ 2100623057 ENCODE Processing Pipeline 210dafa8680a7c67be93e0bb6793d7b8 https://www.encodeproject.org/files/ENCFF612KGJ/@@download/ENCFF612KGJ.bam released s3://encode-public/2020/10/27/a0cfeb01-7845-49b5-b422-b897d11e7f70/ENCFF612KGJ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF213BZN bam bam alignments GRCh38 ENCSR814CUB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF299IIG/, /files/ENCFF144MPP/, /files/ENCFF110MCL/ 1637315081 ENCODE Processing Pipeline b4594e3733cbcdd4f29f8663f0a15d0c https://www.encodeproject.org/files/ENCFF213BZN/@@download/ENCFF213BZN.bam released s3://encode-public/2020/10/27/bde86c71-1583-40dc-9c25-02190cfbc2bc/ENCFF213BZN.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF817ALA bam bam unfiltered alignments hg19 ENCSR769JUI Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF958NMQ/, /files/ENCFF807MUK/ 2413698993 ENCODE Processing Pipeline d56bcb1028de9db3470e7c1deb997d2d https://www.encodeproject.org/files/ENCFF817ALA/@@download/ENCFF817ALA.bam released s3://encode-public/2018/02/22/560727fd-d1d2-4f35-9d87-380ce41649b4/ENCFF817ALA.bam ENCODE3 hg19 archived ENCFF958NMQ fastq fastq reads ENCSR769JUI Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 2156280528 Richard Myers, HAIB d738f495498dceba3546de9156859e53 SRA:SRR5339302 https://www.encodeproject.org/files/ENCFF958NMQ/@@download/ENCFF958NMQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/6872df15-c64e-4911-a9f5-6a6d9cd090d4/ENCFF958NMQ.fastq.gz ENCFF654EHF bam bam alignments hg19 ENCSR769JUI Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF958NMQ/, /files/ENCFF807MUK/ 1835327542 ENCODE Processing Pipeline 6b8e4d612182b8b798909d687bcddbf1 https://www.encodeproject.org/files/ENCFF654EHF/@@download/ENCFF654EHF.bam released s3://encode-public/2016/01/15/bae395d7-0c92-447f-9e4c-be33bed4e6c7/ENCFF654EHF.bam ENCODE3 hg19 archived ENCFF038TGJ bam bam unfiltered alignments GRCh38 ENCSR769JUI Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF958NMQ/, /files/ENCFF643CGH/ 2428125570 ENCODE Processing Pipeline 802a87c470871a9c25e458c7c47a9049 https://www.encodeproject.org/files/ENCFF038TGJ/@@download/ENCFF038TGJ.bam released s3://encode-public/2016/05/06/1270d3bd-af79-4997-ab74-0b82914ff528/ENCFF038TGJ.bam ENCODE3 GRCh38 archived ENCFF995OIG bam bam alignments GRCh38 ENCSR769JUI Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF958NMQ/, /files/ENCFF643CGH/ 1836295646 ENCODE Processing Pipeline a5977b461781e15e25538a3863cb2663 https://www.encodeproject.org/files/ENCFF995OIG/@@download/ENCFF995OIG.bam released s3://encode-public/2016/05/06/17655965-be61-4031-8090-baca930051c2/ENCFF995OIG.bam ENCODE3 GRCh38 archived ENCFF572BGA bam bam unfiltered alignments GRCh38 ENCSR769JUI Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF958NMQ/ 2390765529 ENCODE Processing Pipeline c2297b7d411aac547c913f16a6669d64 https://www.encodeproject.org/files/ENCFF572BGA/@@download/ENCFF572BGA.bam released s3://encode-public/2020/06/06/f479b4c2-fff9-4193-bc21-2ce106403f68/ENCFF572BGA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF152TDN bam bam alignments GRCh38 ENCSR769JUI Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF958NMQ/ 1943353961 ENCODE Processing Pipeline 00b7275701267db62190d259230c72ee https://www.encodeproject.org/files/ENCFF152TDN/@@download/ENCFF152TDN.bam released s3://encode-public/2020/06/06/3b32b0e1-ee5c-4a52-8f67-5a2da9b58ea6/ENCFF152TDN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF239CJZ fastq fastq reads ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 123184957 Michael Snyder, Stanford 5b3818041b999842b7391bbbf047a67b https://www.encodeproject.org/files/ENCFF239CJZ/@@download/ENCFF239CJZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/5b79bdd7-17b8-40a5-9e71-8a02ab3c5d23/ENCFF239CJZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF596JND fastq fastq reads ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 190446432 Michael Snyder, Stanford 48e429bbda5726d2ab5dd6955d1c1a9b https://www.encodeproject.org/files/ENCFF596JND/@@download/ENCFF596JND.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/4fc17419-e0ac-438c-9676-e23a45dddf18/ENCFF596JND.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF229KQJ bam bam alignments ce10 ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF596JND/, /files/ENCFF239CJZ/, /files/ENCFF987UMF/ 417427621 Kevin White, UChicago 1048d591f561a5f90dca9904d061b67c https://www.encodeproject.org/files/ENCFF229KQJ/@@download/ENCFF229KQJ.bam released s3://encode-public/2016/10/18/0a6adc92-6613-4ffa-ab88-0147fd99c6d1/ENCFF229KQJ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF741NBR bam bam alignments ce11 ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF596JND/, /files/ENCFF239CJZ/, /files/ENCFF586MOL/ 417917685 Kevin White, UChicago cc87a59f9e28a5c005e7c045c49e9d28 https://www.encodeproject.org/files/ENCFF741NBR/@@download/ENCFF741NBR.bam released s3://encode-public/2016/10/18/30460377-f429-4dd3-8cba-2bab08891c63/ENCFF741NBR.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF273FBV bigWig bigWig signal of unique reads ce11 ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF741NBR/ 10030404 Kevin White, UChicago 95ebc9a69e82f80ce744abec59d3b456 https://www.encodeproject.org/files/ENCFF273FBV/@@download/ENCFF273FBV.bigWig released s3://encode-public/2016/10/24/30a846e0-ac3e-435d-bcef-e1fe1807e02f/ENCFF273FBV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF829FHO bigWig bigWig signal of unique reads ce10 ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF229KQJ/ 10035327 Kevin White, UChicago 808333ed4b34958ebbf4b1bea56040c2 https://www.encodeproject.org/files/ENCFF829FHO/@@download/ENCFF829FHO.bigWig released s3://encode-public/2016/10/24/9b598dfb-cef2-4986-8314-c0a27c2e3660/ENCFF829FHO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF456LSO bigWig bigWig read-depth normalized signal ce10 ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF229KQJ/ 10056902 Kevin White, UChicago fbeda6a3d3ad7190744e0835a0b8ba3e https://www.encodeproject.org/files/ENCFF456LSO/@@download/ENCFF456LSO.bigWig released s3://encode-public/2016/10/24/371f0743-b102-4f93-b7e8-54e3b59387a9/ENCFF456LSO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF787BWF bigWig bigWig read-depth normalized signal ce11 ENCSR729ROL Control ChIP-seq /worm-donors/ENCDO929KPD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178541/'], '@type': ['Target', 'Item'], 'name': 'W03F9.2-celegans', 'label': 'W03F9.2', '@id': '/targets/W03F9.2-celegans/', 'title': 'W03F9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '5b56e03b-b78e-45ee-bf50-6eb4fdbd918f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF741NBR/ 10046621 Kevin White, UChicago cf8713393139e20465e29e71269b4ada https://www.encodeproject.org/files/ENCFF787BWF/@@download/ENCFF787BWF.bigWig released s3://encode-public/2016/10/24/4cdb12cc-a3d2-422f-9897-fb3f18bd5d7f/ENCFF787BWF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF928URV bam bam unfiltered alignments hg19 ENCSR085OAX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9232/'], '@type': ['Target', 'Item'], 'name': 'PTTG1-human', 'label': 'PTTG1', '@id': '/targets/PTTG1-human/', 'title': 'PTTG1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '16775215-71ea-441a-97b4-ad92aa918d63', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF760WPA/, /files/ENCFF807MUK/, /files/ENCFF950USL/ 6380467530 ENCODE Processing Pipeline 919ea77ac8a5bbf17ef23f4a8500e024 https://www.encodeproject.org/files/ENCFF928URV/@@download/ENCFF928URV.bam released s3://encode-public/2018/02/21/a30f7be3-c00f-4df2-b240-b6b31e4d7906/ENCFF928URV.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF760WPA fastq fastq reads ENCSR085OAX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9232/'], '@type': ['Target', 'Item'], 'name': 'PTTG1-human', 'label': 'PTTG1', '@id': '/targets/PTTG1-human/', 'title': 'PTTG1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '16775215-71ea-441a-97b4-ad92aa918d63', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF950USL/ 2840268085 Michael Snyder, Stanford afa50f3e29d7f86a8867023c2e921e6b SRA:SRR5111072 https://www.encodeproject.org/files/ENCFF760WPA/@@download/ENCFF760WPA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/a626101b-98f3-46e2-838f-40bb0e35fbc9/ENCFF760WPA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF950USL fastq fastq reads ENCSR085OAX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9232/'], '@type': ['Target', 'Item'], 'name': 'PTTG1-human', 'label': 'PTTG1', '@id': '/targets/PTTG1-human/', 'title': 'PTTG1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '16775215-71ea-441a-97b4-ad92aa918d63', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF760WPA/ 3020777297 Michael Snyder, Stanford 363c944b08b28abf3cf97f53aeaaf2af SRA:SRR5111072 https://www.encodeproject.org/files/ENCFF950USL/@@download/ENCFF950USL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/52c5cbb4-7843-46cd-b6ae-e24101187b55/ENCFF950USL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF124STW bam bam alignments hg19 ENCSR085OAX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9232/'], '@type': ['Target', 'Item'], 'name': 'PTTG1-human', 'label': 'PTTG1', '@id': '/targets/PTTG1-human/', 'title': 'PTTG1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '16775215-71ea-441a-97b4-ad92aa918d63', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF760WPA/, /files/ENCFF807MUK/, /files/ENCFF950USL/ 5342463255 ENCODE Processing Pipeline 0137c0df5971a3e39cdfab3008be5c09 https://www.encodeproject.org/files/ENCFF124STW/@@download/ENCFF124STW.bam released s3://encode-public/2015/12/09/5bff6e40-45ef-42db-863e-b97a3edd52ef/ENCFF124STW.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF680JEZ bam bam unfiltered alignments GRCh38 ENCSR085OAX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9232/'], '@type': ['Target', 'Item'], 'name': 'PTTG1-human', 'label': 'PTTG1', '@id': '/targets/PTTG1-human/', 'title': 'PTTG1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '16775215-71ea-441a-97b4-ad92aa918d63', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF760WPA/, /files/ENCFF950USL/, /files/ENCFF643CGH/ 6390337128 ENCODE Processing Pipeline ac89d08397b2a5bc62985f1901a8b126 https://www.encodeproject.org/files/ENCFF680JEZ/@@download/ENCFF680JEZ.bam released s3://encode-public/2016/05/06/0c19b44b-e8c9-4973-87a5-df57da2ee8a6/ENCFF680JEZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF898KHD bam bam alignments GRCh38 ENCSR085OAX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9232/'], '@type': ['Target', 'Item'], 'name': 'PTTG1-human', 'label': 'PTTG1', '@id': '/targets/PTTG1-human/', 'title': 'PTTG1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '16775215-71ea-441a-97b4-ad92aa918d63', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF760WPA/, /files/ENCFF950USL/ 6359644032 ENCODE Processing Pipeline 87d600587db898f27a01606f237a5f78 https://www.encodeproject.org/files/ENCFF034BHT/@@download/ENCFF034BHT.bam released s3://encode-public/2020/06/03/33fc0320-0135-440c-9d24-aa048bb37129/ENCFF034BHT.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF191ZCT bam bam alignments GRCh38 ENCSR085OAX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9232/'], '@type': ['Target', 'Item'], 'name': 'PTTG1-human', 'label': 'PTTG1', '@id': '/targets/PTTG1-human/', 'title': 'PTTG1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '16775215-71ea-441a-97b4-ad92aa918d63', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF760WPA/, /files/ENCFF950USL/ 5247220263 ENCODE Processing Pipeline 317e3590db40388c9682d186ae981374 https://www.encodeproject.org/files/ENCFF191ZCT/@@download/ENCFF191ZCT.bam released s3://encode-public/2020/06/03/cefb50e4-ad0e-421a-ac77-036c11c987ad/ENCFF191ZCT.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF184PEP fastq fastq reads ENCSR264HIK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 single-ended 1166595914 Richard Myers, HAIB f2bb43a8c0a205e0c2c6acb5c2d3f786 SRA:SRR5111349 https://www.encodeproject.org/files/ENCFF184PEP/@@download/ENCFF184PEP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/05/23550ad0-c45b-4f05-9596-1083878784e1/ENCFF184PEP.fastq.gz low read depth ENCFF461UIL bam bam unfiltered alignments mm10 ENCSR264HIK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF184PEP/ 1264231054 ENCODE Processing Pipeline 883cba7a8c46c2c78d270a511caa1b9f https://www.encodeproject.org/files/ENCFF461UIL/@@download/ENCFF461UIL.bam released s3://encode-public/2016/05/20/4863a234-a1de-4ecb-93b6-25dd5f541bf5/ENCFF461UIL.bam ENCODE3 mm10 archived low read depth ENCFF135EEH bam bam alignments mm10 ENCSR264HIK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF184PEP/ 973677261 ENCODE Processing Pipeline 6c9cf1f938e5bf77ec4beb1ef6c78777 https://www.encodeproject.org/files/ENCFF135EEH/@@download/ENCFF135EEH.bam released s3://encode-public/2016/05/20/7815f703-a3ac-44b6-b57b-a3e904d8eaa2/ENCFF135EEH.bam ENCODE3 mm10 archived low read depth ENCFF181AWV bam bam unfiltered alignments mm10 ENCSR264HIK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF184PEP/ 1255190134 ENCODE Processing Pipeline b7fb25cadb6793f87bc947e114a84ba9 https://www.encodeproject.org/files/ENCFF181AWV/@@download/ENCFF181AWV.bam released s3://encode-public/2020/10/08/9e39ef8d-3e98-4c9a-9c7d-282645caad85/ENCFF181AWV.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF271QOI bam bam alignments mm10 ENCSR264HIK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF184PEP/ 1006019763 ENCODE Processing Pipeline 96df4461204182852bc2b06cc374c1ec https://www.encodeproject.org/files/ENCFF271QOI/@@download/ENCFF271QOI.bam released s3://encode-public/2020/10/08/53106565-8623-4f11-a4ee-259186139069/ENCFF271QOI.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF973HIU fastq fastq reads ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 100487186 Michael Snyder, Stanford 9d553f6b78509bfef211a750d247e6f3 https://www.encodeproject.org/files/ENCFF973HIU/@@download/ENCFF973HIU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/10be5047-bfc7-4007-8fd9-72367b507a3f/ENCFF973HIU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF894OQS fastq fastq reads ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 86417133 Michael Snyder, Stanford 028b844869eb3e62f2eed8b6e42deadf https://www.encodeproject.org/files/ENCFF894OQS/@@download/ENCFF894OQS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f5e6e040-869f-4f87-a779-ba036c6186a1/ENCFF894OQS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF948QNC bam bam alignments ce10 ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF894OQS/, /files/ENCFF973HIU/, /files/ENCFF987UMF/ 221887246 Kevin White, UChicago fae6c7d3638a892ec1dba59c268fd04a https://www.encodeproject.org/files/ENCFF948QNC/@@download/ENCFF948QNC.bam released s3://encode-public/2016/10/18/009d3a9a-7b9d-49fa-9999-2b611846f605/ENCFF948QNC.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF475KNC bam bam alignments ce11 ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF894OQS/, /files/ENCFF973HIU/, /files/ENCFF586MOL/ 222087864 Kevin White, UChicago e00b4a00051944d4e0239fd15f052fe7 https://www.encodeproject.org/files/ENCFF475KNC/@@download/ENCFF475KNC.bam released s3://encode-public/2016/10/18/a2300e8e-c3c0-4815-8de9-667fd8403a70/ENCFF475KNC.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF498COY bigWig bigWig signal of unique reads ce10 ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF948QNC/ 9960501 Kevin White, UChicago af7f2042988df5d69b7ad93c6e6b89c3 https://www.encodeproject.org/files/ENCFF498COY/@@download/ENCFF498COY.bigWig released s3://encode-public/2016/10/20/7448dd12-5261-4ff7-a1b4-bc22c49ef427/ENCFF498COY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF090BEQ bigWig bigWig read-depth normalized signal ce10 ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF948QNC/ 9994290 Kevin White, UChicago 28c3e7fdb4db7d3f1717c4fdb3f4d615 https://www.encodeproject.org/files/ENCFF090BEQ/@@download/ENCFF090BEQ.bigWig released s3://encode-public/2016/10/20/7b0d6759-8afb-4fb3-9873-453941ad3e4f/ENCFF090BEQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF670AKO bigWig bigWig signal of unique reads ce11 ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF475KNC/ 9961064 Kevin White, UChicago b76cb837454d9595011a586234fd7152 https://www.encodeproject.org/files/ENCFF670AKO/@@download/ENCFF670AKO.bigWig released s3://encode-public/2016/10/20/32791c05-d312-4d33-a80e-0725ead7d452/ENCFF670AKO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF486CKV bigWig bigWig read-depth normalized signal ce11 ENCSR247VJA Control ChIP-seq /worm-donors/ENCDO249OWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF475KNC/ 9995280 Kevin White, UChicago 70213354a69960aa136413832d0b8711 https://www.encodeproject.org/files/ENCFF486CKV/@@download/ENCFF486CKV.bigWig released s3://encode-public/2016/10/20/74d60bc0-16b3-4f68-a3b5-71bb1b5ba5e1/ENCFF486CKV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF294KLT fastq fastq reads ENCSR790CIN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1051443374 Kevin White, UChicago 8b2124e77f48d6b1a86a979e7e38616c https://www.encodeproject.org/files/ENCFF294KLT/@@download/ENCFF294KLT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/2c1da4b7-ba10-403d-b4a9-3d498c95df98/ENCFF294KLT.fastq.gz ENCFF590ZBF bam bam alignments dm3 ENCSR790CIN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF294KLT/ 1344011782 Kevin White, UChicago 6345e03f33c55fa181d777aa5362b224 https://www.encodeproject.org/files/ENCFF590ZBF/@@download/ENCFF590ZBF.bam released s3://encode-public/2017/07/03/6bd82cf5-f73b-46ef-8b1c-40172ee32472/ENCFF590ZBF.bam Lab custom dm3 archived ENCFF260MWW bam bam alignments dm6 ENCSR790CIN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF294KLT/ 1330788515 Kevin White, UChicago e45da157fc1fbd01ad7ce4e067b080c5 https://www.encodeproject.org/files/ENCFF260MWW/@@download/ENCFF260MWW.bam released s3://encode-public/2017/07/04/dbd4cb5c-b24a-4b32-be47-f6b15afc8563/ENCFF260MWW.bam Lab custom dm6 released ENCFF164MHC bigWig bigWig read-depth normalized signal dm3 ENCSR790CIN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF590ZBF/ 15740845 Kevin White, UChicago 5e7e891edf3ecf873a5e842b0e9d6713 https://www.encodeproject.org/files/ENCFF164MHC/@@download/ENCFF164MHC.bigWig released s3://encode-public/2017/07/05/42320a69-66b7-4fb3-910c-d8b1ae9b3f5b/ENCFF164MHC.bigWig Lab custom dm3 archived ENCFF659HGA bigWig bigWig signal of unique reads dm3 ENCSR790CIN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF590ZBF/ 15736827 Kevin White, UChicago 25b94626d5dd206c4ff476c7d72323e5 https://www.encodeproject.org/files/ENCFF659HGA/@@download/ENCFF659HGA.bigWig released s3://encode-public/2017/07/05/bce7b6c2-85d8-43e5-9dd1-58fe86abad0b/ENCFF659HGA.bigWig Lab custom dm3 archived ENCFF501PYQ bigWig bigWig read-depth normalized signal dm6 ENCSR790CIN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF260MWW/ 17804616 Kevin White, UChicago 04042abee96aeced5b0245952071d4a7 https://www.encodeproject.org/files/ENCFF501PYQ/@@download/ENCFF501PYQ.bigWig released s3://encode-public/2017/07/05/d35c6632-2e54-4596-8af2-b78c12011382/ENCFF501PYQ.bigWig Lab custom dm6 released ENCFF746QBK bigWig bigWig signal of unique reads dm6 ENCSR790CIN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF260MWW/ 17800719 Kevin White, UChicago 3a5171348585ca6924129ee9ebddd957 https://www.encodeproject.org/files/ENCFF746QBK/@@download/ENCFF746QBK.bigWig released s3://encode-public/2017/07/05/6def65b5-b5ca-4a42-b75d-4608c8c13138/ENCFF746QBK.bigWig Lab custom dm6 released ENCFF268DWX bam bam unfiltered alignments hg19 ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF419AVJ/, /files/ENCFF807MUK/, /files/ENCFF918QAP/ 5313451633 ENCODE Processing Pipeline 3559616ff6714342a7055857777c691b https://www.encodeproject.org/files/ENCFF268DWX/@@download/ENCFF268DWX.bam released s3://encode-public/2018/02/21/e51ec3a7-0e67-49e2-98fb-ce9c3aeaa7cf/ENCFF268DWX.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF918QAP fastq fastq reads ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF419AVJ/ 2329653681 Michael Snyder, Stanford 3680ecc7fc75baa77f55b21bc3175f82 SRA:SRR5111333 https://www.encodeproject.org/files/ENCFF918QAP/@@download/ENCFF918QAP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/5ed96a8b-8a17-4b43-9fe1-2cfd4aa280a5/ENCFF918QAP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF419AVJ fastq fastq reads ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF918QAP/ 2425735523 Michael Snyder, Stanford 806a5920bb2776754c1deb4c1084e85b SRA:SRR5111333 https://www.encodeproject.org/files/ENCFF419AVJ/@@download/ENCFF419AVJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/eb447e6f-5114-4074-abca-923165b94864/ENCFF419AVJ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF675KUA bam bam alignments hg19 ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF419AVJ/, /files/ENCFF807MUK/, /files/ENCFF918QAP/ 4694374828 ENCODE Processing Pipeline 8c926b79b0862833d40ad1131b46cda8 https://www.encodeproject.org/files/ENCFF675KUA/@@download/ENCFF675KUA.bam released s3://encode-public/2015/12/09/dd2ae544-044f-41fc-ac98-5cfd74e0068c/ENCFF675KUA.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF235PUM bam bam unfiltered alignments GRCh38 ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF419AVJ/, /files/ENCFF643CGH/, /files/ENCFF918QAP/ 5325128480 ENCODE Processing Pipeline 707a73adccb2b28ddc4948b6da760259 https://www.encodeproject.org/files/ENCFF235PUM/@@download/ENCFF235PUM.bam released s3://encode-public/2016/05/06/1de333a7-c930-42c4-8557-906c36a1ab6e/ENCFF235PUM.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF247YFL bam bam alignments GRCh38 ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF419AVJ/, /files/ENCFF643CGH/, /files/ENCFF918QAP/ 4698696262 ENCODE Processing Pipeline 949c4684dc744b6441d37ae50a9c4c2b https://www.encodeproject.org/files/ENCFF247YFL/@@download/ENCFF247YFL.bam released s3://encode-public/2016/05/06/ee4b4f14-0d52-4592-8bd8-5de5d0dd624b/ENCFF247YFL.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF519AFF bam bam alignments GRCh38 ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF419AVJ/, /files/ENCFF918QAP/ 4437951965 ENCODE Processing Pipeline 17c6406849876ed17d10dc0e36e5dd42 https://www.encodeproject.org/files/ENCFF519AFF/@@download/ENCFF519AFF.bam released s3://encode-public/2020/06/13/d9a26488-567e-4584-88bf-3c97d0237021/ENCFF519AFF.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF952UIW bam bam unfiltered alignments GRCh38 ENCSR249OFO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10661/'], '@type': ['Target', 'Item'], 'name': 'KLF1-human', 'label': 'KLF1', '@id': '/targets/KLF1-human/', 'title': 'KLF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '35534cda-fb29-45e0-8ad7-be4f9f04211b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF419AVJ/, /files/ENCFF918QAP/ 5249007601 ENCODE Processing Pipeline fb8ff092a293fc7298e053f3f97ee4bf https://www.encodeproject.org/files/ENCFF952UIW/@@download/ENCFF952UIW.bam released s3://encode-public/2020/06/13/66f7951b-250a-4d7d-bd8a-a831d63c549f/ENCFF952UIW.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF238TIK fastq fastq reads ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 118111636 Michael Snyder, Stanford c34f8c5915f208daa45ef62398a152ff https://www.encodeproject.org/files/ENCFF238TIK/@@download/ENCFF238TIK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/83fd0d42-d8d1-4233-b14f-d5994cb58940/ENCFF238TIK.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF694PLV fastq fastq reads ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 143218176 Michael Snyder, Stanford 1dafbc5ce78a7cbf21b3e61b5ac456c3 https://www.encodeproject.org/files/ENCFF694PLV/@@download/ENCFF694PLV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/befdf7f8-5a6b-4446-8f9d-38b7edda4393/ENCFF694PLV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF012HYX fastq fastq reads ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 78194499 Michael Snyder, Stanford 8642f33969ebeeaa2033e5988585ad96 https://www.encodeproject.org/files/ENCFF012HYX/@@download/ENCFF012HYX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d22968cd-8263-4260-a4b5-19da3738fe15/ENCFF012HYX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF140KOI bam bam alignments ce10 ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF238TIK/, /files/ENCFF012HYX/, /files/ENCFF694PLV/, /files/ENCFF987UMF/ 362320060 Kevin White, UChicago 5ed2224c5a36bdba3a99e3b2ab01c3f7 https://www.encodeproject.org/files/ENCFF140KOI/@@download/ENCFF140KOI.bam released s3://encode-public/2016/10/18/5e5bb6ed-96ef-4c61-a012-8b1a206bd64a/ENCFF140KOI.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF301BLV bam bam alignments ce11 ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF238TIK/, /files/ENCFF012HYX/, /files/ENCFF694PLV/, /files/ENCFF586MOL/ 362556945 Kevin White, UChicago dbaf6b352881102b7509c1894b39816e https://www.encodeproject.org/files/ENCFF301BLV/@@download/ENCFF301BLV.bam released s3://encode-public/2016/10/18/b817e8dd-52c4-448a-8a3b-2d65ab2a6b77/ENCFF301BLV.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF404QOC bigWig bigWig signal of unique reads ce10 ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF140KOI/ 9963029 Kevin White, UChicago 40a25356206ba7589cef38a70db441e0 https://www.encodeproject.org/files/ENCFF404QOC/@@download/ENCFF404QOC.bigWig released s3://encode-public/2016/10/20/7ced5dbe-0e26-4d3c-9edc-664c85ff6346/ENCFF404QOC.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF757TCP bigWig bigWig read-depth normalized signal ce10 ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF140KOI/ 9990838 Kevin White, UChicago a19018b21d10779b22aabdbf1778c857 https://www.encodeproject.org/files/ENCFF757TCP/@@download/ENCFF757TCP.bigWig released s3://encode-public/2016/10/20/c638fd45-d738-4354-8f79-814e659bb89f/ENCFF757TCP.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF283SKS bigWig bigWig read-depth normalized signal ce11 ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF301BLV/ 9988742 Kevin White, UChicago a707f52037c867377003592800ca3a0a https://www.encodeproject.org/files/ENCFF283SKS/@@download/ENCFF283SKS.bigWig released s3://encode-public/2016/10/21/55aca443-e624-4844-a07a-8175969bb5d4/ENCFF283SKS.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF900KRK bigWig bigWig signal of unique reads ce11 ENCSR815SRO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF301BLV/ 9957790 Kevin White, UChicago bd4c4e05f377177e4efd3a9242619905 https://www.encodeproject.org/files/ENCFF900KRK/@@download/ENCFF900KRK.bigWig released s3://encode-public/2016/10/21/c42cd13e-79ab-4551-a04f-1a717dbfcafe/ENCFF900KRK.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF310MLK fastq fastq reads ENCSR872ZLJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 361342 Kevin White, UChicago c48deed8cef9908e320b09658893b1df https://www.encodeproject.org/files/ENCFF310MLK/@@download/ENCFF310MLK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/23/adfba498-457e-490f-b8ac-98790a0f6d83/ENCFF310MLK.fastq.gz ENCFF106RDB bam bam alignments dm3 ENCSR872ZLJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF310MLK/ 432320 Kevin White, UChicago 61a99f49cf9abf2cd9b276250511de6e https://www.encodeproject.org/files/ENCFF106RDB/@@download/ENCFF106RDB.bam released s3://encode-public/2017/06/19/6103f76e-d772-424c-812e-3f01add0012a/ENCFF106RDB.bam Lab custom dm3 archived ENCFF232BXR bam bam alignments dm6 ENCSR872ZLJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF310MLK/ 452392 Kevin White, UChicago 5ca4387c5eb9aefce9c758970d6b268e https://www.encodeproject.org/files/ENCFF232BXR/@@download/ENCFF232BXR.bam released s3://encode-public/2017/06/28/4d8d1ea8-b0c5-488b-a819-e46775a727ab/ENCFF232BXR.bam Lab custom dm6 released ENCFF518DWD bigWig bigWig signal of unique reads dm3 ENCSR872ZLJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF106RDB/ 7217661 Kevin White, UChicago bbfe81f786d6f204db96860265616e2b https://www.encodeproject.org/files/ENCFF518DWD/@@download/ENCFF518DWD.bigWig released s3://encode-public/2017/06/29/7a7b1085-fa1d-4bce-85d2-9b373ebc13ec/ENCFF518DWD.bigWig Lab custom dm3 archived ENCFF642LOP bigWig bigWig read-depth normalized signal dm3 ENCSR872ZLJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF106RDB/ 7217249 Kevin White, UChicago d9d6e2d1763e2a2d5d3c6d751fdc21dc https://www.encodeproject.org/files/ENCFF642LOP/@@download/ENCFF642LOP.bigWig released s3://encode-public/2017/06/29/b9e84bd7-003f-4ce3-b511-f8072d974d97/ENCFF642LOP.bigWig Lab custom dm3 archived ENCFF039TLK bigWig bigWig read-depth normalized signal dm6 ENCSR872ZLJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF232BXR/ 6670754 Kevin White, UChicago 463d4bcdc5d623c9142d059c789d04e5 https://www.encodeproject.org/files/ENCFF039TLK/@@download/ENCFF039TLK.bigWig released s3://encode-public/2017/06/30/9cd003bc-c99f-4258-8156-49a264aa4b55/ENCFF039TLK.bigWig Lab custom dm6 released ENCFF963OKH bigWig bigWig signal of unique reads dm6 ENCSR872ZLJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF232BXR/ 6671707 Kevin White, UChicago 4b7e3f965c0112cfee4650dc5f2ab431 https://www.encodeproject.org/files/ENCFF963OKH/@@download/ENCFF963OKH.bigWig released s3://encode-public/2017/06/30/0eda0c6a-9c34-4515-b620-9e161e947509/ENCFF963OKH.bigWig Lab custom dm6 released ENCFF902FOR fastq fastq reads ENCSR163VJS Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001013 adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1792489779 Zhiping Weng, UMass 6db46d950ea371f310d9b62af0cda02f SRA:SRR449621 https://www.encodeproject.org/files/ENCFF902FOR/@@download/ENCFF902FOR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/90a49b36-4dea-46b9-9ed7-2a0172be7d23/ENCFF902FOR.fastq.gz low read length ENCFF813ZQH bam bam unfiltered alignments GRCh38 ENCSR163VJS Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001013 adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF902FOR/ 2164789022 ENCODE Processing Pipeline 09a0d9ca9e71a5a39f2a3002a825d603 https://www.encodeproject.org/files/ENCFF813ZQH/@@download/ENCFF813ZQH.bam released s3://encode-public/2020/10/08/4f239cba-1d29-4b82-a036-8a78896695f8/ENCFF813ZQH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF165RQJ bam bam alignments GRCh38 ENCSR163VJS Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001013 adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF902FOR/ 1581393324 ENCODE Processing Pipeline a483737ee887d69cba2ec0c6bd3a0a55 https://www.encodeproject.org/files/ENCFF165RQJ/@@download/ENCFF165RQJ.bam released s3://encode-public/2020/10/08/6d1cc35d-e46c-4979-b4e2-9f29326487c0/ENCFF165RQJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF241JUJ bam bam unfiltered alignments hg19 ENCSR163VJS Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001013 adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF902FOR/ 2219953592 ENCODE Processing Pipeline cbf3d09cd23d57f453240b4e930e6c78 https://www.encodeproject.org/files/ENCFF241JUJ/@@download/ENCFF241JUJ.bam released s3://encode-public/2016/12/19/62babfc3-0218-407d-845b-fcc424adfe3a/ENCFF241JUJ.bam ENCODE3 hg19 archived low read length ENCFF095MVW bam bam unfiltered alignments GRCh38 ENCSR163VJS Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001013 adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF902FOR/ 2235283071 ENCODE Processing Pipeline c0ca881aedb478f6533ddb0d199f69f1 https://www.encodeproject.org/files/ENCFF095MVW/@@download/ENCFF095MVW.bam released s3://encode-public/2016/12/19/2f4f7920-f219-4ec1-94c2-5ebfa65fcb42/ENCFF095MVW.bam ENCODE3 GRCh38 archived low read length ENCFF933NSA bam bam alignments hg19 ENCSR163VJS Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001013 adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF902FOR/ 1438763922 ENCODE Processing Pipeline 3907cc1d6664d375a37e6dcffa58026c https://www.encodeproject.org/files/ENCFF933NSA/@@download/ENCFF933NSA.bam released s3://encode-public/2016/12/19/a47243b3-f5ef-4889-ad73-5ddf394c7c95/ENCFF933NSA.bam ENCODE3 hg19 archived low read length ENCFF168AMY bam bam alignments GRCh38 ENCSR163VJS Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001013 adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF902FOR/ 1438419728 ENCODE Processing Pipeline 1b342c1198b9f81ba32d1287748a6059 https://www.encodeproject.org/files/ENCFF168AMY/@@download/ENCFF168AMY.bam released s3://encode-public/2016/12/19/bf950dfd-07a8-4337-a428-f4ca2d2da1e0/ENCFF168AMY.bam ENCODE3 GRCh38 archived low read length ENCFF394ONL fastq fastq reads ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 93495711 Michael Snyder, Stanford 3c2c76cbb4a99caff93ac5fd5c447ea6 https://www.encodeproject.org/files/ENCFF394ONL/@@download/ENCFF394ONL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/eba849b0-686f-4604-bf6c-8ed8572dde82/ENCFF394ONL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF046RTA fastq fastq reads ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 106277248 Michael Snyder, Stanford 5fc5f32ea2fe6d15f792813a7569a1b5 https://www.encodeproject.org/files/ENCFF046RTA/@@download/ENCFF046RTA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/05ff5698-85c2-47d9-abfe-1a524dd91aef/ENCFF046RTA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF414LBZ bam bam alignments ce10 ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF394ONL/, /files/ENCFF046RTA/, /files/ENCFF987UMF/ 261261819 Kevin White, UChicago 67d090cf360ed6e7d2ea21c837f2012d https://www.encodeproject.org/files/ENCFF414LBZ/@@download/ENCFF414LBZ.bam released s3://encode-public/2016/10/18/df98cf7e-e506-425b-80ed-c2b6f551e679/ENCFF414LBZ.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF959QJZ bam bam alignments ce11 ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF394ONL/, /files/ENCFF046RTA/, /files/ENCFF586MOL/ 261520215 Kevin White, UChicago 18263745cab2fb5a3a9208ef31b19cfc https://www.encodeproject.org/files/ENCFF959QJZ/@@download/ENCFF959QJZ.bam released s3://encode-public/2016/10/19/d21f1722-b4bb-4fc2-a58a-17a9338fdff1/ENCFF959QJZ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF171KLO bigWig bigWig signal of unique reads ce10 ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF414LBZ/ 10051338 Kevin White, UChicago 972b6c5f7a34b2e7e7949c2dab13b946 https://www.encodeproject.org/files/ENCFF171KLO/@@download/ENCFF171KLO.bigWig released s3://encode-public/2016/10/20/28176d5c-aa95-41d3-8c48-b8083221cb8e/ENCFF171KLO.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF969DJF bigWig bigWig read-depth normalized signal ce10 ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF414LBZ/ 10064795 Kevin White, UChicago efb1789ce77a18982c6e03eb0aebf30d https://www.encodeproject.org/files/ENCFF969DJF/@@download/ENCFF969DJF.bigWig released s3://encode-public/2016/10/20/772524dd-9653-46ea-9083-a0db4abfb540/ENCFF969DJF.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF594BDJ bigWig bigWig read-depth normalized signal ce11 ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF959QJZ/ 10064087 Kevin White, UChicago 48cfe1daff537976e5e035979bc50f8b https://www.encodeproject.org/files/ENCFF594BDJ/@@download/ENCFF594BDJ.bigWig released s3://encode-public/2016/10/21/f248931f-6eea-4360-9c8b-a9fd8948e2be/ENCFF594BDJ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF249GBM bigWig bigWig signal of unique reads ce11 ENCSR793GEI Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF959QJZ/ 10047311 Kevin White, UChicago 0084beec5a5421fb99856693599d6c9a https://www.encodeproject.org/files/ENCFF249GBM/@@download/ENCFF249GBM.bigWig released s3://encode-public/2016/10/21/90f49b91-1115-45a9-bdc2-3509380ccdf7/ENCFF249GBM.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF255VKS tagAlign tagAlign alignments hg19 ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF688HAU/ 257981432 Anshul Kundaje, Stanford 65f5d5db8459ac4ecc756845ba9cf7e2 https://www.encodeproject.org/files/ENCFF255VKS/@@download/ENCFF255VKS.tagAlign.gz archived s3://encode-public/2016/05/02/2a9a3dfc-b1ca-482f-a729-428ca4d2e550/ENCFF255VKS.tagAlign.gz Lab custom hg19 archived low read length ENCFF688HAU fastq fastq reads ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2129978273 Zhiping Weng, UMass b94924453f0876fed5664b5c9cd6d405 SRA:SRR304973 https://www.encodeproject.org/files/ENCFF688HAU/@@download/ENCFF688HAU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/17/17b0b47a-9eb9-4601-abf7-7fc4636a8c37/ENCFF688HAU.fastq.gz low read length ENCFF034IPF bam bam unfiltered alignments hg19 ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF688HAU/ 2616511411 ENCODE Processing Pipeline 1e65201b86a0d7d6b4f0afd397eba971 https://www.encodeproject.org/files/ENCFF034IPF/@@download/ENCFF034IPF.bam released s3://encode-public/2016/12/19/95fec4d9-1b9b-467e-a191-32331298b92c/ENCFF034IPF.bam ENCODE3 hg19 archived low read length ENCFF039CDA bam bam alignments hg19 ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF688HAU/ 1635403239 ENCODE Processing Pipeline e2b2c677c6ef97c82c317d6f98662cee https://www.encodeproject.org/files/ENCFF039CDA/@@download/ENCFF039CDA.bam released s3://encode-public/2016/12/19/b83b1b2c-11d1-4202-8a7f-861614a00dd0/ENCFF039CDA.bam ENCODE3 hg19 archived low read length ENCFF158SXC bam bam unfiltered alignments GRCh38 ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF688HAU/ 2630824386 ENCODE Processing Pipeline 18ba1937ce1589b32e8dd7475649be32 https://www.encodeproject.org/files/ENCFF158SXC/@@download/ENCFF158SXC.bam released s3://encode-public/2016/12/19/5ccc7902-b204-4027-84f8-d0552b350f28/ENCFF158SXC.bam ENCODE3 GRCh38 archived low read length ENCFF114RYR bam bam alignments GRCh38 ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF688HAU/ 1635123982 ENCODE Processing Pipeline 31899af090ab549e52f2782e9b245414 https://www.encodeproject.org/files/ENCFF114RYR/@@download/ENCFF114RYR.bam released s3://encode-public/2016/12/19/53421c45-a3f7-4077-92a6-81b095cd44c7/ENCFF114RYR.bam ENCODE3 GRCh38 archived low read length ENCFF215OZB bam bam alignments GRCh38 ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF688HAU/, /files/ENCFF110MCL/ 1803192830 ENCODE Processing Pipeline fee7e1ace2de6b551144c51ddd619ebf https://www.encodeproject.org/files/ENCFF215OZB/@@download/ENCFF215OZB.bam released s3://encode-public/2020/10/08/64799ef9-d07b-4db4-85d6-154e625fe7ce/ENCFF215OZB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF902VKM bam bam unfiltered alignments GRCh38 ENCSR687UKL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF688HAU/, /files/ENCFF110MCL/ 2540217347 ENCODE Processing Pipeline de506dde216253d60c1a84f8456f4203 https://www.encodeproject.org/files/ENCFF902VKM/@@download/ENCFF902VKM.bam released s3://encode-public/2020/10/08/631dc475-797e-4710-9566-9c611fbce13c/ENCFF902VKM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF832DGO fastq fastq reads ENCSR283MGP Control ChIP-seq /fly-donors/ENCDO396ZWH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43069/'], '@type': ['Target', 'Item'], 'name': 'CG10669-dmelanogaster', 'label': 'CG10669', '@id': '/targets/CG10669-dmelanogaster/', 'title': 'CG10669 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2178a011-092c-4049-af4c-3bcc7c37574a', 'status': 'released'} dm3 3R 21147419 21172038 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1139625627 Kevin White, UChicago 2ddb53a327304e44b782d47e3cbe01a4 https://www.encodeproject.org/files/ENCFF832DGO/@@download/ENCFF832DGO.fastq.gz Illumina HiSeq 4000 /files/ENCFF575PJW/ released s3://encode-public/2018/02/01/c8c85086-0608-43cf-8315-e67de5f2ec74/ENCFF832DGO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF873JUM bam bam alignments dm6 ENCSR283MGP Control ChIP-seq /fly-donors/ENCDO396ZWH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43069/'], '@type': ['Target', 'Item'], 'name': 'CG10669-dmelanogaster', 'label': 'CG10669', '@id': '/targets/CG10669-dmelanogaster/', 'title': 'CG10669 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2178a011-092c-4049-af4c-3bcc7c37574a', 'status': 'released'} dm3 3R 21147419 21172038 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF832DGO/, /files/ENCFF479RCH/ 1526873829 Kevin White, UChicago ff8ac3f1406844f45b1357c70102408c https://www.encodeproject.org/files/ENCFF873JUM/@@download/ENCFF873JUM.bam released s3://encode-public/2018/02/02/8fb92af6-4f9d-4e56-9e13-5b36201f8455/ENCFF873JUM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF276POB bigWig bigWig read-depth normalized signal dm6 ENCSR283MGP Control ChIP-seq /fly-donors/ENCDO396ZWH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43069/'], '@type': ['Target', 'Item'], 'name': 'CG10669-dmelanogaster', 'label': 'CG10669', '@id': '/targets/CG10669-dmelanogaster/', 'title': 'CG10669 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2178a011-092c-4049-af4c-3bcc7c37574a', 'status': 'released'} dm3 3R 21147419 21172038 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF873JUM/ 17678528 Kevin White, UChicago d8990ae86894acc17097503c060b55fb https://www.encodeproject.org/files/ENCFF276POB/@@download/ENCFF276POB.bigWig released s3://encode-public/2018/02/02/b6d286a7-ef66-4af7-97b7-c8d8dda5aa91/ENCFF276POB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF270IND bigWig bigWig signal of unique reads dm6 ENCSR283MGP Control ChIP-seq /fly-donors/ENCDO396ZWH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43069/'], '@type': ['Target', 'Item'], 'name': 'CG10669-dmelanogaster', 'label': 'CG10669', '@id': '/targets/CG10669-dmelanogaster/', 'title': 'CG10669 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2178a011-092c-4049-af4c-3bcc7c37574a', 'status': 'released'} dm3 3R 21147419 21172038 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF873JUM/ 17724914 Kevin White, UChicago c8290922fe362582ff6a25b5121253ec https://www.encodeproject.org/files/ENCFF270IND/@@download/ENCFF270IND.bigWig released s3://encode-public/2018/02/02/61d157ff-951b-4b96-b9f7-fd450364d900/ENCFF270IND.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF906UHA tagAlign tagAlign alignments hg19 ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF556KQJ/ 188667817 Anshul Kundaje, Stanford 92010c628c1ee6c5f605c8e18dbf8bb8 https://www.encodeproject.org/files/ENCFF906UHA/@@download/ENCFF906UHA.tagAlign.gz archived s3://encode-public/2016/05/02/99ac289d-eca3-4917-80a4-e83d6485e012/ENCFF906UHA.tagAlign.gz Lab custom hg19 archived low read length ENCFF556KQJ fastq fastq reads ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1285366089 Zhiping Weng, UMass 6fc1515b0fda89d7c1fe8ae70c7b61f3 SRA:SRR1068409 https://www.encodeproject.org/files/ENCFF556KQJ/@@download/ENCFF556KQJ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/19/cafe2581-973a-4e26-8cfc-ec82bfd7d8dd/ENCFF556KQJ.fastq.gz low read length ENCFF958SVY bam bam unfiltered alignments GRCh38 ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF556KQJ/, /files/ENCFF110MCL/ 1479942948 ENCODE Processing Pipeline cfdb32ff0d6c4726b167d553bc07a271 https://www.encodeproject.org/files/ENCFF958SVY/@@download/ENCFF958SVY.bam released s3://encode-public/2020/10/08/79ddf2c6-2b12-4919-9140-45347b28d307/ENCFF958SVY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF528UGS bam bam unfiltered alignments hg19 ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF556KQJ/ 1504172259 ENCODE Processing Pipeline f9f6fa18122111dcff88552da494dfb8 https://www.encodeproject.org/files/ENCFF528UGS/@@download/ENCFF528UGS.bam released s3://encode-public/2016/12/19/578ead29-33f4-4654-82b0-9b0d4b4059fc/ENCFF528UGS.bam ENCODE3 hg19 archived low read length ENCFF054EDG bam bam unfiltered alignments GRCh38 ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF556KQJ/ 1513826262 ENCODE Processing Pipeline 9e30cb63be7e1802fadb1ec879e22860 https://www.encodeproject.org/files/ENCFF054EDG/@@download/ENCFF054EDG.bam released s3://encode-public/2016/12/19/1bea8008-02c9-41c2-8a9a-69c98124c171/ENCFF054EDG.bam ENCODE3 GRCh38 archived low read length ENCFF043HLL bam bam alignments hg19 ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF556KQJ/ 1098626629 ENCODE Processing Pipeline 3efb39dc54d4e39deac1a1bb251a5d97 https://www.encodeproject.org/files/ENCFF043HLL/@@download/ENCFF043HLL.bam released s3://encode-public/2016/12/19/b427cf4f-2c33-49ea-b98e-ad05173a5bf9/ENCFF043HLL.bam ENCODE3 hg19 archived low read length ENCFF080VLA bam bam alignments GRCh38 ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF556KQJ/ 1098527565 ENCODE Processing Pipeline 802580c93736c400451cbb310f2be168 https://www.encodeproject.org/files/ENCFF080VLA/@@download/ENCFF080VLA.bam released s3://encode-public/2016/12/19/7a90293c-a83b-45a9-bc52-9728d046b91a/ENCFF080VLA.bam ENCODE3 GRCh38 archived low read length ENCFF433DSW bam bam alignments GRCh38 ENCSR927WKX Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF556KQJ/, /files/ENCFF110MCL/ 1179578809 ENCODE Processing Pipeline 35e42907da6b15a674d96da9c21889ad https://www.encodeproject.org/files/ENCFF433DSW/@@download/ENCFF433DSW.bam released s3://encode-public/2020/10/08/6b1d14dd-e1df-4bfb-a768-c186ce4dae06/ENCFF433DSW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF597CXC fastq fastq reads ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1106891477 Zhiping Weng, UMass c5e099f1bac05e62b9587af5475a82d5 SRA:SRR449626 https://www.encodeproject.org/files/ENCFF597CXC/@@download/ENCFF597CXC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/e59efe7b-b614-4530-b795-861175a7e4c9/ENCFF597CXC.fastq.gz low read length ENCFF406XBZ bam bam alignments GRCh38 ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF597CXC/, /files/ENCFF110MCL/ 974425830 ENCODE Processing Pipeline d86c7b9031f9ffe196c5a29bdbb5a392 https://www.encodeproject.org/files/ENCFF406XBZ/@@download/ENCFF406XBZ.bam released s3://encode-public/2020/10/08/f6f44d66-3850-4db6-9202-2e83a3459c42/ENCFF406XBZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF738TJZ bam bam unfiltered alignments GRCh38 ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF597CXC/, /files/ENCFF643CGH/ 1378006892 ENCODE Processing Pipeline 06897b88e463d1ed8c08f08bb6b3f4cb https://www.encodeproject.org/files/ENCFF738TJZ/@@download/ENCFF738TJZ.bam released s3://encode-public/2016/12/19/99e4018e-1902-49c0-bde2-eb3792cd58cf/ENCFF738TJZ.bam ENCODE3 GRCh38 archived low read length ENCFF301ZNZ bam bam alignments GRCh38 ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF597CXC/, /files/ENCFF643CGH/ 884804526 ENCODE Processing Pipeline 9e34a97af4daca248521a0f57056664b https://www.encodeproject.org/files/ENCFF301ZNZ/@@download/ENCFF301ZNZ.bam released s3://encode-public/2016/12/19/d540e0bb-7bd9-4244-94a5-439a37552a3f/ENCFF301ZNZ.bam ENCODE3 GRCh38 archived low read length ENCFF439ZXH bam bam unfiltered alignments hg19 ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF597CXC/, /files/ENCFF807MUK/ 1371820758 ENCODE Processing Pipeline d690d6d8be7c069d0acf88bab4e52415 https://www.encodeproject.org/files/ENCFF439ZXH/@@download/ENCFF439ZXH.bam released s3://encode-public/2016/12/19/33fea2df-4b6c-480a-91f7-86a2b05c5fc9/ENCFF439ZXH.bam ENCODE3 hg19 archived low read length ENCFF896AXY bam bam alignments hg19 ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF597CXC/, /files/ENCFF807MUK/ 885052084 ENCODE Processing Pipeline 1ca6b14d984c9cfd5711257a42cb9f99 https://www.encodeproject.org/files/ENCFF896AXY/@@download/ENCFF896AXY.bam released s3://encode-public/2016/12/19/caaa31c3-a1e2-40af-a53a-a1c5f1a4eeea/ENCFF896AXY.bam ENCODE3 hg19 archived low read length ENCFF802YCN tagAlign tagAlign alignments hg19 ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF597CXC/ 148336645 Anshul Kundaje, Stanford 0a39a4166d5b8117d151d6995699f4e1 https://www.encodeproject.org/files/ENCFF802YCN/@@download/ENCFF802YCN.tagAlign.gz archived s3://encode-public/2016/02/11/efc1af42-3250-4c7d-87b5-e64f214e2755/ENCFF802YCN.tagAlign.gz Lab custom hg19 archived low read length ENCFF101KGB bam bam unfiltered alignments GRCh38 ENCSR652ULP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002078 right cardiac atrium tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF597CXC/, /files/ENCFF110MCL/ 1334644137 ENCODE Processing Pipeline c09cdeab0450e69407e99ccd7f94c9fa https://www.encodeproject.org/files/ENCFF101KGB/@@download/ENCFF101KGB.bam released s3://encode-public/2020/10/08/208dd179-112e-46df-92a3-bd17d38e742b/ENCFF101KGB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF865GQB fastq fastq reads ENCSR294TOY Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2022-01-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF274KCI/ 2822590102 Michael Snyder, Stanford e1af372e60946c1841ecb0f7e34bb54d https://www.encodeproject.org/files/ENCFF865GQB/@@download/ENCFF865GQB.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/12/16/399cf6c1-fe12-4a77-89f4-91136510c0d7/ENCFF865GQB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF274KCI fastq fastq reads ENCSR294TOY Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2022-01-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF865GQB/ 2938896468 Michael Snyder, Stanford e1f2ba1f915d5ff1a4a15ba526378dad https://www.encodeproject.org/files/ENCFF274KCI/@@download/ENCFF274KCI.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/12/16/c94cf0bb-9c18-453e-a82e-94ca45e59e81/ENCFF274KCI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF901YUP bam bam unfiltered alignments GRCh38 ENCSR294TOY Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2022-01-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF865GQB/, /files/ENCFF110MCL/, /files/ENCFF274KCI/ 5143877451 ENCODE Processing Pipeline b4b9c259a5b32c96bd564c5f5624d332 https://www.encodeproject.org/files/ENCFF901YUP/@@download/ENCFF901YUP.bam released s3://encode-public/2021/12/21/be9e9981-b044-4cc4-ba45-e2ff1c07b848/ENCFF901YUP.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF648CKA bam bam alignments GRCh38 ENCSR294TOY Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2022-01-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF865GQB/, /files/ENCFF110MCL/, /files/ENCFF274KCI/ 3730808901 ENCODE Processing Pipeline 4d8e07a2bf30d7b4531e516a3cab3d32 https://www.encodeproject.org/files/ENCFF648CKA/@@download/ENCFF648CKA.bam released s3://encode-public/2021/12/21/388183dd-f10e-4395-ab0d-4febf2da50ac/ENCFF648CKA.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF691SWW fastq fastq reads ENCSR743RDE Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1018301905 Kevin White, UChicago d70b7783a4ac846c6bd8e816a8f1d9c0 https://www.encodeproject.org/files/ENCFF691SWW/@@download/ENCFF691SWW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/e094bb65-b6fd-438a-ba49-28cf4bb8ef86/ENCFF691SWW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF148TPN bam bam alignments ce11 ENCSR743RDE Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF691SWW/, /files/ENCFF586MOL/ 1339353232 Kevin White, UChicago d01acea8aa02b9e61fd8a84e964e9663 https://www.encodeproject.org/files/ENCFF148TPN/@@download/ENCFF148TPN.bam released s3://encode-public/2018/02/28/9e39d201-2fd9-4b1f-8c79-d4145ea0cc0b/ENCFF148TPN.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF819KGQ bigWig bigWig read-depth normalized signal ce11 ENCSR743RDE Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF148TPN/ 9953153 Kevin White, UChicago 4c6488803fa2fa96481a224956ee869d https://www.encodeproject.org/files/ENCFF819KGQ/@@download/ENCFF819KGQ.bigWig released s3://encode-public/2018/03/01/544c3872-8492-4fab-bd1f-5877bb6ab6a4/ENCFF819KGQ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF154TYQ bigWig bigWig signal of unique reads ce11 ENCSR743RDE Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', 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s3://encode-public/2021/01/28/8912af59-de42-42e6-9794-d596690f2872/ENCFF718HFQ.fastq.gz ENCFF583HHJ bam bam alignments GRCh38 ENCSR617ONQ Control ChIP-seq /human-donors/ENCDO097MEH/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF423HHL/, /files/ENCFF607LBX/, /files/ENCFF521ILL/, /files/ENCFF705HOT/, /files/ENCFF004CFB/, /files/ENCFF110MCL/, /files/ENCFF983CFH/, /files/ENCFF420JDV/, /files/ENCFF235OUR/, /files/ENCFF748WCY/, /files/ENCFF718HFQ/, /files/ENCFF099UCU/, /files/ENCFF616PUK/ 5494077548 ENCODE Processing Pipeline 321a60a5a437e3c912fe0a4af78799d1 https://www.encodeproject.org/files/ENCFF583HHJ/@@download/ENCFF583HHJ.bam released s3://encode-public/2021/04/09/1396fc29-0f76-4684-80a8-b22a2df489af/ENCFF583HHJ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF093ABP bam bam unfiltered alignments GRCh38 ENCSR617ONQ Control ChIP-seq /human-donors/ENCDO097MEH/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF423HHL/, /files/ENCFF607LBX/, /files/ENCFF521ILL/, /files/ENCFF705HOT/, /files/ENCFF004CFB/, /files/ENCFF110MCL/, /files/ENCFF983CFH/, /files/ENCFF420JDV/, /files/ENCFF235OUR/, /files/ENCFF748WCY/, /files/ENCFF718HFQ/, /files/ENCFF099UCU/, /files/ENCFF616PUK/ 6732426993 ENCODE Processing Pipeline 31557fb83aede8fe94f02a10dc9663c2 https://www.encodeproject.org/files/ENCFF093ABP/@@download/ENCFF093ABP.bam released s3://encode-public/2021/04/09/1afa4a51-8f2d-4160-9420-da214dae63b1/ENCFF093ABP.bam ENCODE4 v1.8.0 GRCh38 released ENCFF031RLD fastq fastq reads ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 448677423 Bing Ren, UCSD 787ae65a5c77b834b7de41d37f4458f6 SRA:SRR3652050 https://www.encodeproject.org/files/ENCFF031RLD/@@download/ENCFF031RLD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/24feeca8-da2d-4825-86ba-d2960a0861f1/ENCFF031RLD.fastq.gz ENCFF015ETA fastq fastq reads ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 434559061 Bing Ren, UCSD fe1f4f3b21c3cf9c8e3994329d909e03 SRA:SRR3652048 https://www.encodeproject.org/files/ENCFF015ETA/@@download/ENCFF015ETA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/8bc2a26b-c667-45e4-bad4-47080cafe2f9/ENCFF015ETA.fastq.gz ENCFF419PTI fastq fastq reads ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1789394983 Bing Ren, UCSD 89c432b08d4f0e6e7e9b7308760505c5 SRA:SRR3652051 https://www.encodeproject.org/files/ENCFF419PTI/@@download/ENCFF419PTI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/ac41280b-1538-4ac0-b92c-823a63c82b3d/ENCFF419PTI.fastq.gz ENCFF695ITS fastq fastq reads ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1891151247 Bing Ren, UCSD 8eb3a3172ded9d4ef81601cab2232eb5 SRA:SRR3652049 https://www.encodeproject.org/files/ENCFF695ITS/@@download/ENCFF695ITS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/33929d29-2b6d-420e-80b1-67ef06343ad2/ENCFF695ITS.fastq.gz ENCFF233LRZ bam bam alignments mm10-minimal ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF806TVZ/, /files/ENCFF695ITS/, /files/ENCFF015ETA/ 2315701757 ENCODE Processing Pipeline a2229138032367ec6216cac6a953b2df https://www.encodeproject.org/files/ENCFF233LRZ/@@download/ENCFF233LRZ.bam archived s3://encode-public/2016/03/29/6ede01ee-3ae9-426f-addf-806dc6063be5/ENCFF233LRZ.bam ENCFF595MDP bam bam alignments mm10-minimal ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF419PTI/, /files/ENCFF806TVZ/, /files/ENCFF031RLD/ 2255517534 ENCODE Processing Pipeline 10cabaa4c012f754c5fb75b1a151fa26 https://www.encodeproject.org/files/ENCFF595MDP/@@download/ENCFF595MDP.bam archived s3://encode-public/2016/03/29/8c5583aa-2386-486f-a3b4-01d17a3fc011/ENCFF595MDP.bam ENCFF131VYV bam bam unfiltered alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF018NEO/, /files/ENCFF695ITS/, /files/ENCFF015ETA/ 3205597747 ENCODE Processing Pipeline cc641e3a2a555c77999148953d47f067 https://www.encodeproject.org/files/ENCFF131VYV/@@download/ENCFF131VYV.bam released s3://encode-public/2016/05/20/a3829c4a-a464-4061-8b42-96dc218e7ac9/ENCFF131VYV.bam ENCODE3 mm10 archived ENCFF350XFJ bam bam unfiltered alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF419PTI/, /files/ENCFF018NEO/, /files/ENCFF031RLD/ 3097284945 ENCODE Processing Pipeline 0685dd70fdcd6b8ba104cd15282e794e https://www.encodeproject.org/files/ENCFF350XFJ/@@download/ENCFF350XFJ.bam released s3://encode-public/2016/05/20/dcc0304c-255d-4925-b31b-90856bb3a1d5/ENCFF350XFJ.bam ENCODE3 mm10 archived ENCFF781DUP bam bam alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF018NEO/, /files/ENCFF695ITS/, /files/ENCFF015ETA/ 2315156865 ENCODE Processing Pipeline 36bd590545316c4d07e44de7a866c322 https://www.encodeproject.org/files/ENCFF781DUP/@@download/ENCFF781DUP.bam released s3://encode-public/2016/05/20/4cea1730-0801-4259-bfc1-faa3dade9a0d/ENCFF781DUP.bam ENCODE3 mm10 archived ENCFF548IIV bam bam alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF419PTI/, /files/ENCFF018NEO/, /files/ENCFF031RLD/ 2255018175 ENCODE Processing Pipeline 47d9947365d7ce806820d1bd3eaa27a3 https://www.encodeproject.org/files/ENCFF548IIV/@@download/ENCFF548IIV.bam released s3://encode-public/2016/05/20/eb872a4a-6f07-4553-ac79-3cb258f0e3dc/ENCFF548IIV.bam ENCODE3 mm10 archived ENCFF612UYX bam bam alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF015ETA/, /files/ENCFF309GLL/, /files/ENCFF695ITS/ 2341179260 ENCODE Processing Pipeline 34f571dffbfb5683ca0dc376d8afc738 https://www.encodeproject.org/files/ENCFF612UYX/@@download/ENCFF612UYX.bam released s3://encode-public/2020/10/08/5afe1053-961f-4fd2-ab80-325da86c865e/ENCFF612UYX.bam ENCODE4 v1.5.1 mm10 released ENCFF659FXF bam bam unfiltered alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF031RLD/, /files/ENCFF419PTI/, /files/ENCFF309GLL/ 2949030913 ENCODE Processing Pipeline e47497a083feaf72c3b28b9f5fa9e714 https://www.encodeproject.org/files/ENCFF659FXF/@@download/ENCFF659FXF.bam released s3://encode-public/2020/10/08/58663685-94fe-48b4-94e5-3cc8e7879f93/ENCFF659FXF.bam ENCODE4 v1.5.1 mm10 released ENCFF878FCB bam bam unfiltered alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF015ETA/, /files/ENCFF309GLL/, /files/ENCFF695ITS/ 3051590062 ENCODE Processing Pipeline be4639ad5d252d1a4bd69103c9ef17bb https://www.encodeproject.org/files/ENCFF878FCB/@@download/ENCFF878FCB.bam released s3://encode-public/2020/10/08/92cdf5b4-96ae-47db-bc6b-cdd50a2534bb/ENCFF878FCB.bam ENCODE4 v1.5.1 mm10 released ENCFF595NGH bam bam alignments mm10 ENCSR415FCU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF031RLD/, /files/ENCFF419PTI/, /files/ENCFF309GLL/ 2279556182 ENCODE Processing Pipeline d415be234af314db6722d8218f70f1fb https://www.encodeproject.org/files/ENCFF595NGH/@@download/ENCFF595NGH.bam released s3://encode-public/2020/10/08/b8718f9a-90d6-4fa2-aee1-83442a72da72/ENCFF595NGH.bam ENCODE4 v1.5.1 mm10 released ENCFF179WWY bam bam redacted unfiltered alignments GRCh38 ENCSR787EKS Control ChIP-seq /human-donors/ENCDO884GGM/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF532QSQ/, /files/ENCFF630LSJ/, /files/ENCFF643CGH/, /files/ENCFF264EGZ/, /files/ENCFF131UFD/ 480566512 ENCODE Processing Pipeline 5a7b1ba16bc80a68288babf4fffa3716 https://www.encodeproject.org/files/ENCFF179WWY/@@download/ENCFF179WWY.bam released s3://encode-public/2018/01/18/131609fe-6f7d-4727-bed4-bb97cb2f0268/ENCFF179WWY.bam ENCODE3 GRCh38 archived low read length ENCFF946QOM bam bam redacted alignments GRCh38 ENCSR787EKS Control ChIP-seq /human-donors/ENCDO884GGM/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF532QSQ/, /files/ENCFF630LSJ/, /files/ENCFF643CGH/, /files/ENCFF264EGZ/, /files/ENCFF131UFD/ 330071150 ENCODE Processing Pipeline 793496c3367a28ecca60790019f22ea8 https://www.encodeproject.org/files/ENCFF946QOM/@@download/ENCFF946QOM.bam released s3://encode-public/2018/01/18/e7086ee4-d0d9-46f6-9ce4-d1f77926a547/ENCFF946QOM.bam ENCODE3 GRCh38 archived low read length ENCFF070ECZ bam bam redacted alignments hg19 ENCSR787EKS Control ChIP-seq /human-donors/ENCDO884GGM/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF532QSQ/, /files/ENCFF630LSJ/, /files/ENCFF807MUK/, /files/ENCFF264EGZ/, /files/ENCFF131UFD/ 330047459 ENCODE Processing Pipeline 0684219f0fa422e7dea4956ecb56e4af https://www.encodeproject.org/files/ENCFF070ECZ/@@download/ENCFF070ECZ.bam released s3://encode-public/2018/01/19/0fe69cc7-4a6c-4289-81b5-a0cfc6e8438b/ENCFF070ECZ.bam ENCODE3 hg19 archived low read length ENCFF185GDG bam bam redacted unfiltered alignments hg19 ENCSR787EKS Control ChIP-seq /human-donors/ENCDO884GGM/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF532QSQ/, /files/ENCFF630LSJ/, /files/ENCFF807MUK/, /files/ENCFF264EGZ/, /files/ENCFF131UFD/ 475968677 ENCODE Processing Pipeline 1d1ed982ca07ff6fe3e127ae1ca7db20 https://www.encodeproject.org/files/ENCFF185GDG/@@download/ENCFF185GDG.bam released s3://encode-public/2018/01/19/1aa00455-4996-492e-abc2-c6415340d19a/ENCFF185GDG.bam ENCODE3 hg19 archived low read length ENCFF607AIK bam bam redacted alignments GRCh38 ENCSR787EKS Control ChIP-seq /human-donors/ENCDO884GGM/ UBERON:0004222 stomach smooth muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF264EGZ/, /files/ENCFF532QSQ/, /files/ENCFF131UFD/, /files/ENCFF630LSJ/, /files/ENCFF110MCL/ 1045937288 ENCODE Processing Pipeline a0b93cc7cc13b1dae1210faf659b7269 https://www.encodeproject.org/files/ENCFF607AIK/@@download/ENCFF607AIK.bam released s3://encode-public/2021/01/27/a9840a73-b06b-4601-bea0-bfa45604212b/ENCFF607AIK.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF131OEZ fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1550646878 Bradley Bernstein, Broad 85c3ea1e1520df620796bc69ead6cabe SRA:SRR5832734 https://www.encodeproject.org/files/ENCFF131OEZ/@@download/ENCFF131OEZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/22895304-863f-422c-9cbe-c8cd9140f227/ENCFF131OEZ.fastq.gz inconsistent platforms ENCFF935YMD fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1526384738 Bradley Bernstein, Broad a8a265cab3637be6366966c9a554e760 SRA:SRR5832735 https://www.encodeproject.org/files/ENCFF935YMD/@@download/ENCFF935YMD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/b3edb472-5f90-4694-9320-4166aa33166f/ENCFF935YMD.fastq.gz inconsistent platforms ENCFF881SIL bam bam unfiltered alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 3006588406 ENCODE Processing Pipeline 1e19ed20e2ef3335c542d8b80e2ff4a4 https://www.encodeproject.org/files/ENCFF881SIL/@@download/ENCFF881SIL.bam archived s3://encode-public/2016/10/27/5122b1c4-dbb1-4859-96f2-453d36db9f7a/ENCFF881SIL.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF608SQR bam bam alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 2555984042 ENCODE Processing Pipeline af419f2ec09b20dbf9b954197c713e7e https://www.encodeproject.org/files/ENCFF608SQR/@@download/ENCFF608SQR.bam archived s3://encode-public/2016/10/27/6ce875fd-4d35-4eb6-885c-6b3b3ff9a684/ENCFF608SQR.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF360PCZ bam bam unfiltered alignments hg19 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 2996084179 ENCODE Processing Pipeline 1c2e149303e305c31d98400ca6d18a0c https://www.encodeproject.org/files/ENCFF360PCZ/@@download/ENCFF360PCZ.bam archived s3://encode-public/2016/10/27/a6b533a1-2757-4887-8e84-da17c16b8215/ENCFF360PCZ.bam ENCODE3 hg19 archived inconsistent platforms ENCFF715WFB bam bam alignments hg19 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 2552424073 ENCODE Processing Pipeline 15e048d97b24d75d31f477216f8c4e63 https://www.encodeproject.org/files/ENCFF715WFB/@@download/ENCFF715WFB.bam archived s3://encode-public/2016/10/27/d1467f54-b929-4f24-b18e-065b7f853832/ENCFF715WFB.bam ENCODE3 hg19 archived inconsistent platforms ENCFF428AYZ fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 328026948 Bradley Bernstein, Broad 575a99845b7de199370f073cefbd24db https://www.encodeproject.org/files/ENCFF428AYZ/@@download/ENCFF428AYZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/41a722cb-caeb-4746-9e26-7ae11d124fb1/ENCFF428AYZ.fastq.gz inconsistent platforms ENCFF639OOV fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 328043708 Bradley Bernstein, Broad 5b6093dcf29f9d36ad1064d9729a7d4d https://www.encodeproject.org/files/ENCFF639OOV/@@download/ENCFF639OOV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/531a554b-dd49-40c8-ae48-29cf037619f4/ENCFF639OOV.fastq.gz inconsistent platforms ENCFF080UEO fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 333641709 Bradley Bernstein, Broad 656b0226dffce9b73b6b06726deec94c https://www.encodeproject.org/files/ENCFF080UEO/@@download/ENCFF080UEO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/171f3bc5-a650-4765-8f4d-10ec069c6fdd/ENCFF080UEO.fastq.gz inconsistent platforms ENCFF043BJZ fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 330852360 Bradley Bernstein, Broad 8885c3ab448c058a529bdcefcff4ca00 https://www.encodeproject.org/files/ENCFF043BJZ/@@download/ENCFF043BJZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/6e951a56-27aa-4ea7-a2d0-9c6dfa0bcfa5/ENCFF043BJZ.fastq.gz inconsistent platforms ENCFF074BLL fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 292665804 Bradley Bernstein, Broad 4afe4d675db10d72782cd041295d6913 https://www.encodeproject.org/files/ENCFF074BLL/@@download/ENCFF074BLL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/69fb7c49-cd8c-423f-8068-49466433db55/ENCFF074BLL.fastq.gz inconsistent platforms ENCFF190XYQ fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 303992065 Bradley Bernstein, Broad 2fdffb3e37ba49fdf1eb65965a98868d https://www.encodeproject.org/files/ENCFF190XYQ/@@download/ENCFF190XYQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/42019fa3-348d-4ca5-9fb3-a21b4c924dcb/ENCFF190XYQ.fastq.gz inconsistent platforms ENCFF809SOJ fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 295163620 Bradley Bernstein, Broad 35c23d283ceb8438d342decf747a6cc5 https://www.encodeproject.org/files/ENCFF809SOJ/@@download/ENCFF809SOJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/7d2fa07a-046a-456d-868a-b6f70c75c0c3/ENCFF809SOJ.fastq.gz inconsistent platforms ENCFF790CKH fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 295186378 Bradley Bernstein, Broad 4847c471250d0de097f2a18653289ff6 https://www.encodeproject.org/files/ENCFF790CKH/@@download/ENCFF790CKH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/1036ebb5-e94a-4385-81f9-2b238e54f3de/ENCFF790CKH.fastq.gz inconsistent platforms ENCFF063EWB fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 808351645 Bradley Bernstein, Broad 2a4afa3b615cab46d21b907b7554c905 https://www.encodeproject.org/files/ENCFF063EWB/@@download/ENCFF063EWB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/7e8c91da-05f3-4167-bbd6-22d736ee5789/ENCFF063EWB.fastq.gz inconsistent platforms ENCFF943CXW fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 776660795 Bradley Bernstein, Broad 1717b760fc2d3a7694fd356f9de509e8 https://www.encodeproject.org/files/ENCFF943CXW/@@download/ENCFF943CXW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/0c3a87ec-7b57-4556-b7c6-0cbd1083016e/ENCFF943CXW.fastq.gz inconsistent platforms ENCFF685UNG bam bam unfiltered alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF943CXW/, /files/ENCFF063EWB/, /files/ENCFF643CGH/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 4474229153 ENCODE Processing Pipeline 0e890861952f6b47eadec7c19a30ea87 https://www.encodeproject.org/files/ENCFF685UNG/@@download/ENCFF685UNG.bam released s3://encode-public/2019/08/22/9c6ba14d-889e-48b2-b860-40834a508cf2/ENCFF685UNG.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF890XKJ bam bam unfiltered alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF043BJZ/, /files/ENCFF643CGH/, /files/ENCFF639OOV/, /files/ENCFF074BLL/, /files/ENCFF535QWD/, /files/ENCFF428AYZ/, /files/ENCFF080UEO/, /files/ENCFF809SOJ/, /files/ENCFF190XYQ/, /files/ENCFF574FYF/, /files/ENCFF790CKH/ 3641820191 ENCODE Processing Pipeline 461a7243ed11fdfbeb68c8103bbbee7c https://www.encodeproject.org/files/ENCFF890XKJ/@@download/ENCFF890XKJ.bam released s3://encode-public/2019/08/22/bdf626ba-060c-42bc-87de-4c0c62ace5eb/ENCFF890XKJ.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF704BVL bam bam unfiltered alignments hg19 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF943CXW/, /files/ENCFF063EWB/, /files/ENCFF807MUK/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 4458935730 ENCODE Processing Pipeline cee79e3f341b21380fadd8733a1dfb2e https://www.encodeproject.org/files/ENCFF704BVL/@@download/ENCFF704BVL.bam released s3://encode-public/2019/08/22/2d6e5ba8-153b-4b89-b217-961443ad6911/ENCFF704BVL.bam ENCODE3 hg19 archived inconsistent platforms ENCFF746ZRB bam bam alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF943CXW/, /files/ENCFF063EWB/, /files/ENCFF643CGH/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 3806386754 ENCODE Processing Pipeline d6593f0b8631d6fb27badd21d2556e5a https://www.encodeproject.org/files/ENCFF746ZRB/@@download/ENCFF746ZRB.bam released s3://encode-public/2019/08/22/1b0a1cfe-3c58-447d-84d9-a292d535b4b3/ENCFF746ZRB.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF700LDB bam bam unfiltered alignments hg19 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF043BJZ/, /files/ENCFF807MUK/, /files/ENCFF639OOV/, /files/ENCFF074BLL/, /files/ENCFF535QWD/, /files/ENCFF428AYZ/, /files/ENCFF080UEO/, /files/ENCFF809SOJ/, /files/ENCFF190XYQ/, /files/ENCFF574FYF/, /files/ENCFF790CKH/ 3627846712 ENCODE Processing Pipeline 7a3c2fc770f57be2e045d8db447b5a68 https://www.encodeproject.org/files/ENCFF700LDB/@@download/ENCFF700LDB.bam released s3://encode-public/2019/08/22/0574ecbf-46d7-47ef-bcb7-40ff577494cf/ENCFF700LDB.bam ENCODE3 hg19 archived inconsistent platforms ENCFF124DXU bam bam alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF043BJZ/, /files/ENCFF643CGH/, /files/ENCFF639OOV/, /files/ENCFF074BLL/, /files/ENCFF535QWD/, /files/ENCFF428AYZ/, /files/ENCFF080UEO/, /files/ENCFF809SOJ/, /files/ENCFF190XYQ/, /files/ENCFF574FYF/, /files/ENCFF790CKH/ 2913386168 ENCODE Processing Pipeline 8ad14fcca2a1825ce72d9a1934518f3d https://www.encodeproject.org/files/ENCFF124DXU/@@download/ENCFF124DXU.bam released s3://encode-public/2019/08/22/6d3f6817-7714-4f07-ba02-d3470ee4aa1e/ENCFF124DXU.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF875OHE bam bam alignments hg19 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF943CXW/, /files/ENCFF063EWB/, /files/ENCFF807MUK/, /files/ENCFF131OEZ/, /files/ENCFF935YMD/ 3800786338 ENCODE Processing Pipeline d82caa35df67c27ba24f9a77f7dbb0a8 https://www.encodeproject.org/files/ENCFF875OHE/@@download/ENCFF875OHE.bam released s3://encode-public/2019/08/22/c7ce3086-926b-42a5-8241-76a7da1bd3ba/ENCFF875OHE.bam ENCODE3 hg19 archived inconsistent platforms ENCFF458EFE bam bam alignments hg19 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF043BJZ/, /files/ENCFF807MUK/, /files/ENCFF639OOV/, /files/ENCFF074BLL/, /files/ENCFF535QWD/, /files/ENCFF428AYZ/, /files/ENCFF080UEO/, /files/ENCFF809SOJ/, /files/ENCFF190XYQ/, /files/ENCFF574FYF/, /files/ENCFF790CKH/ 2909244605 ENCODE Processing Pipeline 3b01373665e152f122c8e6ee3d0e316f https://www.encodeproject.org/files/ENCFF458EFE/@@download/ENCFF458EFE.bam released s3://encode-public/2019/08/22/e92b8df3-a954-4568-8058-3480c99e728d/ENCFF458EFE.bam ENCODE3 hg19 archived inconsistent platforms ENCFF535QWD fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 600606274 Bradley Bernstein, Broad dd851ff60db9eda03280290211a6ade9 https://www.encodeproject.org/files/ENCFF535QWD/@@download/ENCFF535QWD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/00f97cb8-7b08-4f30-93b0-c21e5cfd24af/ENCFF535QWD.fastq.gz inconsistent platforms ENCFF574FYF fastq fastq reads ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 585011989 Bradley Bernstein, Broad ce8f331bd2e9f0ea99b069b2c4cad35b https://www.encodeproject.org/files/ENCFF574FYF/@@download/ENCFF574FYF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/09fc1ebb-f513-4972-bdc2-e7c9dfd74303/ENCFF574FYF.fastq.gz inconsistent platforms ENCFF335NNA bam bam unfiltered alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF131OEZ/, /files/ENCFF110MCL/, /files/ENCFF935YMD/, /files/ENCFF063EWB/, /files/ENCFF943CXW/ 4498615997 ENCODE Processing Pipeline 8972a64b278a38c6da30c6bc1dac6c41 https://www.encodeproject.org/files/ENCFF335NNA/@@download/ENCFF335NNA.bam released s3://encode-public/2020/08/06/2cd0bf33-1e9d-4c6f-a826-b45929b51b2c/ENCFF335NNA.bam ENCODE4 GRCh38 released inconsistent platforms ENCFF455MJS bam bam unfiltered alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF639OOV/, /files/ENCFF809SOJ/, /files/ENCFF190XYQ/, /files/ENCFF074BLL/, /files/ENCFF110MCL/, /files/ENCFF790CKH/, /files/ENCFF428AYZ/, /files/ENCFF574FYF/, /files/ENCFF043BJZ/, /files/ENCFF080UEO/, /files/ENCFF535QWD/ 3621698494 ENCODE Processing Pipeline f1b697877eaa03c8691032241937367c https://www.encodeproject.org/files/ENCFF455MJS/@@download/ENCFF455MJS.bam released s3://encode-public/2020/08/06/f1650d2e-0c4a-4c02-a79e-0c96dcf2f58f/ENCFF455MJS.bam ENCODE4 GRCh38 released inconsistent platforms ENCFF310CQJ bam bam alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF131OEZ/, /files/ENCFF110MCL/, /files/ENCFF935YMD/, /files/ENCFF063EWB/, /files/ENCFF943CXW/ 3834916538 ENCODE Processing Pipeline 1349ec0de5a200f06db038e5a0e34437 https://www.encodeproject.org/files/ENCFF310CQJ/@@download/ENCFF310CQJ.bam released s3://encode-public/2020/08/06/79731af0-49b7-41bd-8bcf-4f3e14db95fd/ENCFF310CQJ.bam ENCODE4 GRCh38 released inconsistent platforms ENCFF207KUE bam bam alignments GRCh38 ENCSR189UPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF639OOV/, /files/ENCFF809SOJ/, /files/ENCFF190XYQ/, /files/ENCFF074BLL/, /files/ENCFF110MCL/, /files/ENCFF790CKH/, /files/ENCFF428AYZ/, /files/ENCFF574FYF/, /files/ENCFF043BJZ/, /files/ENCFF080UEO/, /files/ENCFF535QWD/ 2927910649 ENCODE Processing Pipeline 918c5c374cdd10ee8dbb31c9a4021417 https://www.encodeproject.org/files/ENCFF207KUE/@@download/ENCFF207KUE.bam released s3://encode-public/2020/08/06/2479392d-79d7-41bd-ab97-eeed8a8f46ae/ENCFF207KUE.bam ENCODE4 GRCh38 released inconsistent platforms ENCFF923RYW fastq fastq reads ENCSR914YDH Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 211928312 Michael Snyder, Stanford 1f9b960eeb1957e8e0bed931de54fcda https://www.encodeproject.org/files/ENCFF923RYW/@@download/ENCFF923RYW.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2016/02/03/a4804d7c-7cec-4c6d-b6b7-f4d5f5e7f658/ENCFF923RYW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF086IUY fastq fastq reads ENCSR914YDH Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 223900044 Michael Snyder, Stanford 8b85cbee26059610de25eafa3d38d104 https://www.encodeproject.org/files/ENCFF086IUY/@@download/ENCFF086IUY.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2016/02/03/4bfd8a52-16c0-4dcf-b3fb-5dd599c9513b/ENCFF086IUY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF222BHX tagAlign tagAlign alignments hg19 ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF351AVX/, /files/ENCFF499CAE/, /files/ENCFF563HLU/ 75211539 Anshul Kundaje, Stanford 366f161e9bf21ca5d7755a8ab5e8d607 https://www.encodeproject.org/files/ENCFF222BHX/@@download/ENCFF222BHX.tagAlign.gz archived s3://encode-public/2016/05/02/c492b6e8-9af8-4323-a843-4fb2f3c6c631/ENCFF222BHX.tagAlign.gz Lab custom hg19 archived low read depth insufficient read length ENCFF563HLU fastq fastq reads ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 single-ended 149407149 Zhiping Weng, UMass babf7f22ef2a35a1f62fdfd32a604d61 SRA:SRR097974 https://www.encodeproject.org/files/ENCFF563HLU/@@download/ENCFF563HLU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/12/a57acbd0-c378-4652-abb2-7bf607b6cf8f/ENCFF563HLU.fastq.gz low read depth insufficient read length ENCFF499CAE fastq fastq reads ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 single-ended 148918502 Zhiping Weng, UMass 8f6cb67a33e5f39927c835ecd51bd51c SRA:SRR097975 https://www.encodeproject.org/files/ENCFF499CAE/@@download/ENCFF499CAE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/12/5430a30d-95a5-487b-8844-a9e7f3cc797f/ENCFF499CAE.fastq.gz low read depth insufficient read length ENCFF351AVX fastq fastq reads ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 single-ended 144502776 Zhiping Weng, UMass ad2c4bdd9558ad3c47b47c3f6c223eb6 SRA:SRR097976 https://www.encodeproject.org/files/ENCFF351AVX/@@download/ENCFF351AVX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/12/9cad73f2-20a5-4e65-9994-0b58ccde679f/ENCFF351AVX.fastq.gz low read depth insufficient read length ENCFF556HRM bam bam unfiltered alignments hg19 ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF807MUK/, /files/ENCFF351AVX/, /files/ENCFF499CAE/, /files/ENCFF563HLU/ 560321699 ENCODE Processing Pipeline de29b44bcba1af277efa4c0e9df0372b https://www.encodeproject.org/files/ENCFF556HRM/@@download/ENCFF556HRM.bam released s3://encode-public/2017/03/31/3f4be636-49a5-4139-af0b-06ff08b3a7f3/ENCFF556HRM.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF969ORX bam bam alignments hg19 ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF807MUK/, /files/ENCFF351AVX/, /files/ENCFF499CAE/, /files/ENCFF563HLU/ 400322353 ENCODE Processing Pipeline c08f35ae4cc0a8d07e5d86fac182f62f https://www.encodeproject.org/files/ENCFF969ORX/@@download/ENCFF969ORX.bam released s3://encode-public/2017/03/31/1c90a6dc-6908-4c75-87b5-c01f9ce9282b/ENCFF969ORX.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF124UKZ bam bam unfiltered alignments GRCh38 ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF643CGH/, /files/ENCFF351AVX/, /files/ENCFF499CAE/, /files/ENCFF563HLU/ 561592604 ENCODE Processing Pipeline ffaa8d2bbbe3a14638036c6806f39f61 https://www.encodeproject.org/files/ENCFF124UKZ/@@download/ENCFF124UKZ.bam released s3://encode-public/2017/03/31/99b397af-2931-4e67-a859-75b0064ea5cc/ENCFF124UKZ.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF843GJA bam bam alignments GRCh38 ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF643CGH/, /files/ENCFF351AVX/, /files/ENCFF499CAE/, /files/ENCFF563HLU/ 400105185 ENCODE Processing Pipeline b6462cb29c363ce89ede54708a413189 https://www.encodeproject.org/files/ENCFF843GJA/@@download/ENCFF843GJA.bam released s3://encode-public/2017/03/31/1628ded3-640d-4f62-bc77-d79eb0fcb734/ENCFF843GJA.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF304XQO bam bam unfiltered alignments GRCh38 ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF499CAE/, /files/ENCFF563HLU/, /files/ENCFF351AVX/, /files/ENCFF110MCL/ 545496611 ENCODE Processing Pipeline 842877f7a25786bbdef48f033a4c9214 https://www.encodeproject.org/files/ENCFF304XQO/@@download/ENCFF304XQO.bam released s3://encode-public/2020/11/13/0cb3de5d-bef4-4277-8dc4-8f12fc9cbbf4/ENCFF304XQO.bam ENCODE4 v1.6.1 GRCh38 released low read depth insufficient read length ENCFF777KUY bam bam alignments GRCh38 ENCSR848XIE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF499CAE/, /files/ENCFF563HLU/, /files/ENCFF351AVX/, /files/ENCFF110MCL/ 429898598 ENCODE Processing Pipeline fea7389dc64fc02938cc4b4907cb815f https://www.encodeproject.org/files/ENCFF777KUY/@@download/ENCFF777KUY.bam released s3://encode-public/2020/11/13/8bada1a7-92b1-40c2-ada0-e4a36703b6c7/ENCFF777KUY.bam ENCODE4 v1.6.1 GRCh38 released low read depth insufficient read length ENCFF045OPQ fastq fastq reads ENCSR655QMD Control ChIP-seq /fly-donors/ENCDO058LDU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32166/'], '@type': ['Target', 'Item'], 'name': 'Chrac-16-dmelanogaster', 'label': 'Chrac-16', '@id': '/targets/Chrac-16-dmelanogaster/', 'title': 'Chrac-16 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b1546e83-c5dc-4bd6-a2fe-b12ef774492e', 'status': 'released'} dm3 X 11900862 11924670 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 467851546 Kevin White, UChicago f24db15880fe9f6293aff19e2a81237b https://www.encodeproject.org/files/ENCFF045OPQ/@@download/ENCFF045OPQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/09/4a3f5205-d88e-4752-a244-d1e700b7478c/ENCFF045OPQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF945ATF bam bam alignments dm3 ENCSR655QMD Control ChIP-seq /fly-donors/ENCDO058LDU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32166/'], '@type': ['Target', 'Item'], 'name': 'Chrac-16-dmelanogaster', 'label': 'Chrac-16', '@id': '/targets/Chrac-16-dmelanogaster/', 'title': 'Chrac-16 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b1546e83-c5dc-4bd6-a2fe-b12ef774492e', 'status': 'released'} dm3 X 11900862 11924670 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF059UHX/, /files/ENCFF045OPQ/ 572170243 Kevin White, UChicago 10a5c3cf1f372fdd0dea84ddaeab2361 https://www.encodeproject.org/files/ENCFF945ATF/@@download/ENCFF945ATF.bam released s3://encode-public/2016/04/10/f051ff06-c60e-4ecc-bd2c-ab62d8b677b3/ENCFF945ATF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF807TUV bigWig bigWig signal of unique reads dm3 ENCSR655QMD Control ChIP-seq /fly-donors/ENCDO058LDU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32166/'], '@type': ['Target', 'Item'], 'name': 'Chrac-16-dmelanogaster', 'label': 'Chrac-16', '@id': '/targets/Chrac-16-dmelanogaster/', 'title': 'Chrac-16 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b1546e83-c5dc-4bd6-a2fe-b12ef774492e', 'status': 'released'} dm3 X 11900862 11924670 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF945ATF/ 15328213 Kevin White, UChicago 740ce4f082ff751dbba7dee18a7acde4 https://www.encodeproject.org/files/ENCFF807TUV/@@download/ENCFF807TUV.bigWig released s3://encode-public/2016/04/11/d6ad96d0-c361-47f6-a1a6-5830bdf89bb3/ENCFF807TUV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF260SLQ bigWig bigWig read-depth normalized signal dm3 ENCSR655QMD Control ChIP-seq /fly-donors/ENCDO058LDU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32166/'], '@type': ['Target', 'Item'], 'name': 'Chrac-16-dmelanogaster', 'label': 'Chrac-16', '@id': '/targets/Chrac-16-dmelanogaster/', 'title': 'Chrac-16 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b1546e83-c5dc-4bd6-a2fe-b12ef774492e', 'status': 'released'} dm3 X 11900862 11924670 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF945ATF/ 15234964 Kevin White, UChicago 7f1676aa14d42d54663b853aeb205266 https://www.encodeproject.org/files/ENCFF260SLQ/@@download/ENCFF260SLQ.bigWig released s3://encode-public/2016/04/11/60051c02-a6c9-4b63-97bf-ef6f14c8b3e2/ENCFF260SLQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF822COV bam bam alignments dm6 ENCSR655QMD Control ChIP-seq /fly-donors/ENCDO058LDU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32166/'], '@type': ['Target', 'Item'], 'name': 'Chrac-16-dmelanogaster', 'label': 'Chrac-16', '@id': '/targets/Chrac-16-dmelanogaster/', 'title': 'Chrac-16 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b1546e83-c5dc-4bd6-a2fe-b12ef774492e', 'status': 'released'} dm3 X 11900862 11924670 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF479RCH/, /files/ENCFF045OPQ/ 568854587 Kevin White, UChicago 9612c8263a0a461dc5cb62c9d84d1896 https://www.encodeproject.org/files/ENCFF822COV/@@download/ENCFF822COV.bam released s3://encode-public/2016/04/21/9152e952-f022-4828-bbeb-f0718e341e22/ENCFF822COV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF840JBH bigWig bigWig signal of unique reads dm6 ENCSR655QMD Control ChIP-seq /fly-donors/ENCDO058LDU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32166/'], '@type': ['Target', 'Item'], 'name': 'Chrac-16-dmelanogaster', 'label': 'Chrac-16', '@id': '/targets/Chrac-16-dmelanogaster/', 'title': 'Chrac-16 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b1546e83-c5dc-4bd6-a2fe-b12ef774492e', 'status': 'released'} dm3 X 11900862 11924670 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF822COV/ 17421437 Kevin White, UChicago c611121063de196aa8b66d78b90360f9 https://www.encodeproject.org/files/ENCFF840JBH/@@download/ENCFF840JBH.bigWig released s3://encode-public/2016/06/20/0563c525-b4a8-490c-9dde-e1a0433b3dc8/ENCFF840JBH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF973TUU bigWig bigWig read-depth normalized signal dm6 ENCSR655QMD Control ChIP-seq /fly-donors/ENCDO058LDU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32166/'], '@type': ['Target', 'Item'], 'name': 'Chrac-16-dmelanogaster', 'label': 'Chrac-16', '@id': '/targets/Chrac-16-dmelanogaster/', 'title': 'Chrac-16 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b1546e83-c5dc-4bd6-a2fe-b12ef774492e', 'status': 'released'} dm3 X 11900862 11924670 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF822COV/ 17298920 Kevin White, UChicago 9c1311e2f3adfcfa43742172a9582dab https://www.encodeproject.org/files/ENCFF973TUU/@@download/ENCFF973TUU.bigWig released s3://encode-public/2016/06/20/2e6fea89-b134-44bc-b0f8-9b513e62ee94/ENCFF973TUU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF936AOH fastq fastq reads ENCSR802IDG Control ChIP-seq /fly-donors/ENCDO386FNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43580/'], '@type': ['Target', 'Item'], 'name': 'sima-dmelanogaster', 'label': 'sima', '@id': '/targets/sima-dmelanogaster/', 'title': 'sima (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a2a211ad-324a-4b2b-84f6-fe2f920accda', 'status': 'released'} dm3 3R 25859037 25962494 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 593002249 Kevin White, UChicago c74b3a343eac10ca5979d0dc60c8a5d4 https://www.encodeproject.org/files/ENCFF936AOH/@@download/ENCFF936AOH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/c99b8322-ebeb-4774-bbd0-f5166e2da114/ENCFF936AOH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF998LJN bam bam alignments dm3 ENCSR802IDG Control ChIP-seq /fly-donors/ENCDO386FNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43580/'], '@type': ['Target', 'Item'], 'name': 'sima-dmelanogaster', 'label': 'sima', '@id': '/targets/sima-dmelanogaster/', 'title': 'sima (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a2a211ad-324a-4b2b-84f6-fe2f920accda', 'status': 'released'} dm3 3R 25859037 25962494 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF936AOH/ 868933538 Kevin White, UChicago 321e99bc1d2355983dc15941a4e23a71 https://www.encodeproject.org/files/ENCFF998LJN/@@download/ENCFF998LJN.bam released s3://encode-public/2015/08/03/993553c4-7bc6-4d39-887e-f4b51f0352a2/ENCFF998LJN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF601EGJ bigWig bigWig signal of unique reads dm3 ENCSR802IDG Control ChIP-seq /fly-donors/ENCDO386FNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43580/'], '@type': ['Target', 'Item'], 'name': 'sima-dmelanogaster', 'label': 'sima', '@id': '/targets/sima-dmelanogaster/', 'title': 'sima (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a2a211ad-324a-4b2b-84f6-fe2f920accda', 'status': 'released'} dm3 3R 25859037 25962494 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF998LJN/ 15354815 Kevin White, UChicago c0ae92a1971abd2ca8d54c382c442e92 https://www.encodeproject.org/files/ENCFF601EGJ/@@download/ENCFF601EGJ.bigWig released s3://encode-public/2015/10/05/6201e535-71d8-43d7-b165-f1f5b76b613a/ENCFF601EGJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF802XDR bigWig bigWig read-depth normalized signal dm3 ENCSR802IDG Control ChIP-seq /fly-donors/ENCDO386FNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43580/'], '@type': ['Target', 'Item'], 'name': 'sima-dmelanogaster', 'label': 'sima', '@id': '/targets/sima-dmelanogaster/', 'title': 'sima (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a2a211ad-324a-4b2b-84f6-fe2f920accda', 'status': 'released'} dm3 3R 25859037 25962494 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF998LJN/ 15391439 Kevin White, UChicago 1f9aec23af847f5736411fbfda1fbcbb https://www.encodeproject.org/files/ENCFF802XDR/@@download/ENCFF802XDR.bigWig released s3://encode-public/2015/10/05/0758aae4-aae8-4de4-8fe4-1b553ac52813/ENCFF802XDR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF145LUV bam bam alignments dm6 ENCSR802IDG Control ChIP-seq /fly-donors/ENCDO386FNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43580/'], '@type': ['Target', 'Item'], 'name': 'sima-dmelanogaster', 'label': 'sima', '@id': '/targets/sima-dmelanogaster/', 'title': 'sima (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a2a211ad-324a-4b2b-84f6-fe2f920accda', 'status': 'released'} dm3 3R 25859037 25962494 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF936AOH/ 866246080 Kevin White, UChicago bd5a90cfd1a21eb39487004c125ed915 https://www.encodeproject.org/files/ENCFF145LUV/@@download/ENCFF145LUV.bam released s3://encode-public/2016/04/22/88bc5bc4-21d5-4237-b958-14840fc3b8c4/ENCFF145LUV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF334TGH bigWig bigWig read-depth normalized signal dm6 ENCSR802IDG Control ChIP-seq /fly-donors/ENCDO386FNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43580/'], '@type': ['Target', 'Item'], 'name': 'sima-dmelanogaster', 'label': 'sima', '@id': '/targets/sima-dmelanogaster/', 'title': 'sima (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a2a211ad-324a-4b2b-84f6-fe2f920accda', 'status': 'released'} dm3 3R 25859037 25962494 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF145LUV/ 17509454 Kevin White, UChicago c4775cbd0f19d3cad52987e6933e2985 https://www.encodeproject.org/files/ENCFF334TGH/@@download/ENCFF334TGH.bigWig released s3://encode-public/2016/06/21/72c6e9df-f89d-4643-93fc-1648257486fb/ENCFF334TGH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002SJQ bigWig bigWig signal of unique reads dm6 ENCSR802IDG Control ChIP-seq /fly-donors/ENCDO386FNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43580/'], '@type': ['Target', 'Item'], 'name': 'sima-dmelanogaster', 'label': 'sima', '@id': '/targets/sima-dmelanogaster/', 'title': 'sima (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a2a211ad-324a-4b2b-84f6-fe2f920accda', 'status': 'released'} dm3 3R 25859037 25962494 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF145LUV/ 17453815 Kevin White, UChicago 9d44b7cbb74d517fce0a400855d6fdc3 https://www.encodeproject.org/files/ENCFF002SJQ/@@download/ENCFF002SJQ.bigWig released s3://encode-public/2016/06/21/e779458b-0276-4fee-9853-979c1a5f1684/ENCFF002SJQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF636VMO fastq fastq reads ENCSR689PMU Control ChIP-seq /fly-donors/ENCDO562SBX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41182/'], '@type': ['Target', 'Item'], 'name': 'fd85E-dmelanogaster', 'label': 'fd85E', '@id': '/targets/fd85E-dmelanogaster/', 'title': 'fd85E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d80814b-d30c-4b5b-8782-5ccf6cbd1b64', 'status': 'released'} dm3 3R 9719040 9741201 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 387347630 Kevin White, UChicago 1a2eedb9587e8ed4e246216dfbe448ae https://www.encodeproject.org/files/ENCFF636VMO/@@download/ENCFF636VMO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/964d2693-c491-46c0-85ce-537ce86667c3/ENCFF636VMO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF383UQQ bam bam alignments dm3 ENCSR689PMU Control ChIP-seq /fly-donors/ENCDO562SBX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41182/'], '@type': ['Target', 'Item'], 'name': 'fd85E-dmelanogaster', 'label': 'fd85E', '@id': '/targets/fd85E-dmelanogaster/', 'title': 'fd85E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d80814b-d30c-4b5b-8782-5ccf6cbd1b64', 'status': 'released'} dm3 3R 9719040 9741201 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF636VMO/ 464127123 Kevin White, UChicago 093f1d8e66c91ea7cd87e5be0ea37aa2 https://www.encodeproject.org/files/ENCFF383UQQ/@@download/ENCFF383UQQ.bam released s3://encode-public/2016/04/10/d6b911c8-fc0d-4965-ab91-99c209572ec4/ENCFF383UQQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF189FOT bam bam alignments dm6 ENCSR689PMU Control ChIP-seq /fly-donors/ENCDO562SBX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41182/'], '@type': ['Target', 'Item'], 'name': 'fd85E-dmelanogaster', 'label': 'fd85E', '@id': '/targets/fd85E-dmelanogaster/', 'title': 'fd85E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d80814b-d30c-4b5b-8782-5ccf6cbd1b64', 'status': 'released'} dm3 3R 9719040 9741201 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF636VMO/ 462262568 Kevin White, 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UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41182/'], '@type': ['Target', 'Item'], 'name': 'fd85E-dmelanogaster', 'label': 'fd85E', '@id': '/targets/fd85E-dmelanogaster/', 'title': 'fd85E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d80814b-d30c-4b5b-8782-5ccf6cbd1b64', 'status': 'released'} dm3 3R 9719040 9741201 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF189FOT/ 17084347 Kevin White, UChicago ab94dcc7b7473312bcbf8aaac1c244bf https://www.encodeproject.org/files/ENCFF787APB/@@download/ENCFF787APB.bigWig released 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https://www.encodeproject.org/files/ENCFF193DWB/@@download/ENCFF193DWB.bam released s3://encode-public/2020/10/08/19de2b28-f6e7-4dac-93a1-35098a2f9cf6/ENCFF193DWB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF279CKD bam bam alignments GRCh38 ENCSR254MCO Control ChIP-seq /human-donors/ENCDO424FTP/ EFO:0007089 HUES64 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF902MPL/ 1479690014 ENCODE Processing Pipeline 90e0ca531f39fbd6576399ea8fac929d https://www.encodeproject.org/files/ENCFF279CKD/@@download/ENCFF279CKD.bam released s3://encode-public/2020/10/08/4d751346-0f5c-4def-a5e1-4e01ab187a49/ENCFF279CKD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF525BWR fastq fastq reads ENCSR764ZNN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF753JPR/ 2996675045 Michael Snyder, Stanford b52dc2b3891b8ca05ab6b117fe760626 SRA:SRR14637662 https://www.encodeproject.org/files/ENCFF525BWR/@@download/ENCFF525BWR.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/02/11/0e5f4484-6312-4eaf-9665-02d20bc0df74/ENCFF525BWR.fastq.gz mild to moderate bottlenecking ENCFF753JPR fastq fastq reads ENCSR764ZNN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF525BWR/ 3071737986 Michael Snyder, Stanford 36208be61f18747b9d2065b903f518b8 SRA:SRR14637662 https://www.encodeproject.org/files/ENCFF753JPR/@@download/ENCFF753JPR.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/02/11/0f0c876d-9b6c-4d52-b5c0-37a1411fef8e/ENCFF753JPR.fastq.gz mild to moderate bottlenecking ENCFF457YHQ bam bam unfiltered alignments GRCh38 ENCSR764ZNN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF525BWR/, /files/ENCFF753JPR/ 5500386234 ENCODE Processing Pipeline 7ca7d0890606264ec170123909c965e2 https://www.encodeproject.org/files/ENCFF457YHQ/@@download/ENCFF457YHQ.bam released s3://encode-public/2021/03/18/8ca4d49f-55b6-4751-b680-37756290ca7d/ENCFF457YHQ.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking ENCFF122WYR bam bam alignments GRCh38 ENCSR764ZNN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF525BWR/, /files/ENCFF753JPR/ 4264234750 ENCODE Processing Pipeline 8e25155c431ff67d98a4b16f443dec5d https://www.encodeproject.org/files/ENCFF122WYR/@@download/ENCFF122WYR.bam released s3://encode-public/2021/03/18/bbe13c81-8f6b-4175-80b1-79465fab7b7a/ENCFF122WYR.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking ENCFF628BRB fastq fastq reads ENCSR224PPR Control ChIP-seq /fly-donors/ENCDO968ITZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33442/'], '@type': ['Target', 'Item'], 'name': 'Elba2-dmelanogaster', 'label': 'Elba2', '@id': '/targets/Elba2-dmelanogaster/', 'title': 'Elba2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cdccbf0b-8b2e-4d63-89a9-54440e08c80a', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 370167086 Kevin White, UChicago f75b40a40e081ab9a2bbe4a22f3c01da https://www.encodeproject.org/files/ENCFF628BRB/@@download/ENCFF628BRB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/1009b989-b17d-4268-b497-4ebc27057015/ENCFF628BRB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF905JTV bam bam alignments dm3 ENCSR224PPR Control ChIP-seq /fly-donors/ENCDO968ITZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33442/'], '@type': ['Target', 'Item'], 'name': 'Elba2-dmelanogaster', 'label': 'Elba2', '@id': '/targets/Elba2-dmelanogaster/', 'title': 'Elba2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cdccbf0b-8b2e-4d63-89a9-54440e08c80a', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF628BRB/ 456224197 Kevin White, UChicago bdb1c5729fe8335f90e4a235c39a299e https://www.encodeproject.org/files/ENCFF905JTV/@@download/ENCFF905JTV.bam released s3://encode-public/2016/04/10/fe31e6e0-c8cf-454d-881d-9c87676c3c86/ENCFF905JTV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF222RUQ bigWig bigWig read-depth normalized signal dm3 ENCSR224PPR Control ChIP-seq /fly-donors/ENCDO968ITZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33442/'], '@type': ['Target', 'Item'], 'name': 'Elba2-dmelanogaster', 'label': 'Elba2', '@id': '/targets/Elba2-dmelanogaster/', 'title': 'Elba2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cdccbf0b-8b2e-4d63-89a9-54440e08c80a', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF905JTV/ 15270977 Kevin White, UChicago 2da5c38aae037c31bb7ff4c9baf159f0 https://www.encodeproject.org/files/ENCFF222RUQ/@@download/ENCFF222RUQ.bigWig released s3://encode-public/2016/04/11/663d7016-6bde-4ca4-91be-21fba47a5c03/ENCFF222RUQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF473ZNN bigWig bigWig signal of unique reads dm3 ENCSR224PPR Control ChIP-seq /fly-donors/ENCDO968ITZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33442/'], '@type': ['Target', 'Item'], 'name': 'Elba2-dmelanogaster', 'label': 'Elba2', '@id': '/targets/Elba2-dmelanogaster/', 'title': 'Elba2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cdccbf0b-8b2e-4d63-89a9-54440e08c80a', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF905JTV/ 15270045 Kevin White, UChicago e91ee7ee6d7856d99761e74aa0338c66 https://www.encodeproject.org/files/ENCFF473ZNN/@@download/ENCFF473ZNN.bigWig released s3://encode-public/2016/04/11/f1b2316c-bcce-435d-9a75-efef2d96cfd8/ENCFF473ZNN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF041SZP bam bam alignments dm6 ENCSR224PPR Control ChIP-seq /fly-donors/ENCDO968ITZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33442/'], '@type': ['Target', 'Item'], 'name': 'Elba2-dmelanogaster', 'label': 'Elba2', '@id': '/targets/Elba2-dmelanogaster/', 'title': 'Elba2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cdccbf0b-8b2e-4d63-89a9-54440e08c80a', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF628BRB/ 451055834 Kevin White, UChicago 9abf512de7ddfdf7fe2fcc42bad8aa22 https://www.encodeproject.org/files/ENCFF041SZP/@@download/ENCFF041SZP.bam released s3://encode-public/2016/04/21/e2356906-dd12-420d-9b12-f0c290d5fca0/ENCFF041SZP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF616RME bigWig bigWig signal of unique reads dm6 ENCSR224PPR Control ChIP-seq /fly-donors/ENCDO968ITZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33442/'], '@type': ['Target', 'Item'], 'name': 'Elba2-dmelanogaster', 'label': 'Elba2', '@id': '/targets/Elba2-dmelanogaster/', 'title': 'Elba2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cdccbf0b-8b2e-4d63-89a9-54440e08c80a', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF041SZP/ 17368160 Kevin White, UChicago 5d896158f53063cd346f32b934dbfc0a https://www.encodeproject.org/files/ENCFF616RME/@@download/ENCFF616RME.bigWig released s3://encode-public/2016/06/20/6abaa5b3-65d6-4250-8a81-ef32f7879435/ENCFF616RME.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF798YGC bigWig bigWig read-depth normalized signal dm6 ENCSR224PPR Control ChIP-seq /fly-donors/ENCDO968ITZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33442/'], '@type': ['Target', 'Item'], 'name': 'Elba2-dmelanogaster', 'label': 'Elba2', '@id': '/targets/Elba2-dmelanogaster/', 'title': 'Elba2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cdccbf0b-8b2e-4d63-89a9-54440e08c80a', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF041SZP/ 17379662 Kevin White, UChicago 19b5931d98511c2018e2fbb47b48c186 https://www.encodeproject.org/files/ENCFF798YGC/@@download/ENCFF798YGC.bigWig released s3://encode-public/2016/06/20/d2e8687a-c02a-46b9-af1f-92fdd3de1321/ENCFF798YGC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF594SCX fastq fastq reads ENCSR446IEV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF929TNV/ 2419683855 Michael Snyder, Stanford 2e619534f2c967fe9886f1eb01464d79 https://www.encodeproject.org/files/ENCFF594SCX/@@download/ENCFF594SCX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2022/01/18/2b94081c-be84-4d3a-8c92-6e5209fb2469/ENCFF594SCX.fastq.gz ENCFF929TNV fastq fastq reads ENCSR446IEV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF594SCX/ 2812827869 Michael Snyder, Stanford db02fea391f7f6e35781bbc4a7750453 https://www.encodeproject.org/files/ENCFF929TNV/@@download/ENCFF929TNV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2022/01/18/a0c76957-9536-4f78-b2fb-74eef1a9b916/ENCFF929TNV.fastq.gz ENCFF312VXC bam bam unfiltered alignments GRCh38 ENCSR446IEV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF929TNV/, /files/ENCFF594SCX/ 5387536797 ENCODE Processing Pipeline 8e95675d747cda3640e7731581ceb32c https://www.encodeproject.org/files/ENCFF312VXC/@@download/ENCFF312VXC.bam released s3://encode-public/2022/03/19/e65de51a-3773-4b20-82ac-680300c8a726/ENCFF312VXC.bam ENCODE4 v1.8.0 GRCh38 released ENCFF415JON bam bam alignments GRCh38 ENCSR446IEV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2022-03-22 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF929TNV/, /files/ENCFF594SCX/ 4197130291 ENCODE Processing Pipeline 9a800a29a2880c0ab7fbb87bcbc966cb https://www.encodeproject.org/files/ENCFF415JON/@@download/ENCFF415JON.bam released s3://encode-public/2022/03/19/4950dd5c-74e2-4bd5-b023-e5c0ba42f825/ENCFF415JON.bam ENCODE4 v1.8.0 GRCh38 released ENCFF344PWR fastq fastq reads ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF683TAH/ 4952943833 Michael Snyder, Stanford 64ae5648a686173d8a9e4c0aa809a6e6 SRA:SRR8660416 https://www.encodeproject.org/files/ENCFF344PWR/@@download/ENCFF344PWR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/24/1b291a69-9353-4638-9a92-842cd7d083eb/ENCFF344PWR.fastq.gz mild to moderate bottlenecking ENCFF683TAH fastq fastq reads ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF344PWR/ 4798518059 Michael Snyder, Stanford b735a6c3c619b2a13f7e5e929c674aca SRA:SRR8660416 https://www.encodeproject.org/files/ENCFF683TAH/@@download/ENCFF683TAH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/24/89b5574c-8b9e-472d-8964-d3f3afbeb973/ENCFF683TAH.fastq.gz mild to moderate bottlenecking ENCFF961LWZ bam bam unfiltered alignments GRCh38 ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF344PWR/, /files/ENCFF643CGH/, /files/ENCFF683TAH/ 8722511008 ENCODE Processing Pipeline 926bcc54f2e152f3f692fca5706697c3 https://www.encodeproject.org/files/ENCFF961LWZ/@@download/ENCFF961LWZ.bam released s3://encode-public/2016/05/06/3cac914f-850d-4dbb-b3b7-b604ed9430a1/ENCFF961LWZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF546KMN bam bam alignments GRCh38 ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF344PWR/, /files/ENCFF643CGH/, /files/ENCFF683TAH/ 6458705415 ENCODE Processing Pipeline 8e7269add146f02644356daf388f624c https://www.encodeproject.org/files/ENCFF546KMN/@@download/ENCFF546KMN.bam released s3://encode-public/2016/05/06/ca5cd595-4a9e-437c-9bed-b624b88c0ea0/ENCFF546KMN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF610NXF bam bam unfiltered alignments hg19 ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF344PWR/, /files/ENCFF807MUK/, /files/ENCFF683TAH/ 8717627567 ENCODE Processing Pipeline bb4f2950d006efd282a1be9a17123408 https://www.encodeproject.org/files/ENCFF610NXF/@@download/ENCFF610NXF.bam released s3://encode-public/2016/12/06/c98ca152-7f3d-42f2-9a3b-19cb44a6ef1e/ENCFF610NXF.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF769GZU bam bam alignments hg19 ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF344PWR/, /files/ENCFF807MUK/, /files/ENCFF683TAH/ 6442414870 ENCODE Processing Pipeline 98329c64ca32da8bacb9522946c1ada3 https://www.encodeproject.org/files/ENCFF769GZU/@@download/ENCFF769GZU.bam released s3://encode-public/2016/12/06/caf973b6-8440-46a7-a53d-9e3db5b6e282/ENCFF769GZU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF572PZL bam bam unfiltered alignments GRCh38 ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF683TAH/, /files/ENCFF344PWR/, /files/ENCFF110MCL/ 8715623287 ENCODE Processing Pipeline 28b730ed41aa8da97c49d2cbca7d34bd https://www.encodeproject.org/files/ENCFF572PZL/@@download/ENCFF572PZL.bam released s3://encode-public/2020/06/13/a5bb5cf8-b7c7-4e48-9cd9-1d30cebea90f/ENCFF572PZL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF982SSO bam bam alignments GRCh38 ENCSR498VPN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF683TAH/, /files/ENCFF344PWR/, /files/ENCFF110MCL/ 6312745495 ENCODE Processing Pipeline f5cc981606efe12235a0477ebe76b869 https://www.encodeproject.org/files/ENCFF982SSO/@@download/ENCFF982SSO.bam released s3://encode-public/2020/06/13/27794a8a-1e73-4098-89b3-483e61d342a8/ENCFF982SSO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF658HDH fastq fastq reads ENCSR437DCH Control ChIP-seq /human-donors/ENCDO634UMA/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 189467145 Bradley Bernstein, Broad 68c328a588567333b26390dda089d983 SRA:SRR14638637 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https://www.encodeproject.org/files/ENCFF341MXL/@@download/ENCFF341MXL.bam released s3://encode-public/2021/04/09/54a41c22-a8dc-4daf-8a21-b33bc3d4128f/ENCFF341MXL.bam ENCODE4 v1.8.0 GRCh38 released ENCFF910MYB fastq fastq reads ENCSR843KFW Control ChIP-seq /fly-donors/ENCDO273WUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37336/'], '@type': ['Target', 'Item'], 'name': 'maf-S-dmelanogaster', 'label': 'maf-S', '@id': '/targets/maf-S-dmelanogaster/', 'title': 'maf-S (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4fdeda29-88b5-4748-aae2-33b1130502dc', 'status': 'released'} dm3 2R 16451385 16557051 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 462445787 Kevin White, UChicago 4bd4cf273047cfc841424934ebb6ca39 https://www.encodeproject.org/files/ENCFF910MYB/@@download/ENCFF910MYB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/4ca45e54-aa7e-40a6-93e3-1098d0826742/ENCFF910MYB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF729RIB bam bam alignments dm3 ENCSR843KFW Control ChIP-seq /fly-donors/ENCDO273WUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37336/'], '@type': ['Target', 'Item'], 'name': 'maf-S-dmelanogaster', 'label': 'maf-S', '@id': '/targets/maf-S-dmelanogaster/', 'title': 'maf-S (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4fdeda29-88b5-4748-aae2-33b1130502dc', 'status': 'released'} dm3 2R 16451385 16557051 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF910MYB/ 669483562 Kevin White, UChicago 190203061d800466affdae227e14f9e5 https://www.encodeproject.org/files/ENCFF729RIB/@@download/ENCFF729RIB.bam released s3://encode-public/2015/08/03/2bcc8e84-90c4-4a32-bf7d-45a814008c2f/ENCFF729RIB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF343NKK bigWig bigWig signal of unique reads dm3 ENCSR843KFW Control ChIP-seq /fly-donors/ENCDO273WUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 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biosample characterization ENCFF860HND bigWig bigWig read-depth normalized signal dm3 ENCSR843KFW Control ChIP-seq /fly-donors/ENCDO273WUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37336/'], '@type': ['Target', 'Item'], 'name': 'maf-S-dmelanogaster', 'label': 'maf-S', '@id': '/targets/maf-S-dmelanogaster/', 'title': 'maf-S (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4fdeda29-88b5-4748-aae2-33b1130502dc', 'status': 'released'} dm3 2R 16451385 16557051 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF729RIB/ 15317641 Kevin White, UChicago ebc7089f5abe4b011c48054ff8ca937c https://www.encodeproject.org/files/ENCFF860HND/@@download/ENCFF860HND.bigWig released s3://encode-public/2015/10/05/54ebd296-e368-472c-b10b-a8c4ab21cbbe/ENCFF860HND.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF352QFT bam bam alignments dm6 ENCSR843KFW Control ChIP-seq /fly-donors/ENCDO273WUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37336/'], '@type': ['Target', 'Item'], 'name': 'maf-S-dmelanogaster', 'label': 'maf-S', '@id': '/targets/maf-S-dmelanogaster/', 'title': 'maf-S (Drosophila 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/fly-donors/ENCDO273WUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37336/'], '@type': ['Target', 'Item'], 'name': 'maf-S-dmelanogaster', 'label': 'maf-S', '@id': '/targets/maf-S-dmelanogaster/', 'title': 'maf-S (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4fdeda29-88b5-4748-aae2-33b1130502dc', 'status': 'released'} dm3 2R 16451385 16557051 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF352QFT/ 17403469 Kevin White, UChicago 9a625d5d7ee0ed9403dfd08352d26761 https://www.encodeproject.org/files/ENCFF412RFJ/@@download/ENCFF412RFJ.bigWig released s3://encode-public/2016/06/21/1d20afb0-65e1-4a07-aab9-cf12f35f0b20/ENCFF412RFJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF212LGV bam bam unfiltered alignments hg19 ENCSR021JFW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2961/'], '@type': ['Target', 'Item'], 'name': 'GTF2E2-human', 'label': 'GTF2E2', '@id': '/targets/GTF2E2-human/', 'title': 'GTF2E2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7ac16ca3-1ee6-4a41-b95b-222eda229f72', 'status': 'released'} hg19 8 30413856 30636691 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF422UWG/, /files/ENCFF807MUK/ 1083801170 ENCODE Processing Pipeline 896a98eec0f724538914b90abad83e32 https://www.encodeproject.org/files/ENCFF212LGV/@@download/ENCFF212LGV.bam released s3://encode-public/2018/02/21/8eec5c22-e646-42e4-8acc-536a58026fad/ENCFF212LGV.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF422UWG fastq fastq reads ENCSR021JFW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2961/'], '@type': ['Target', 'Item'], 'name': 'GTF2E2-human', 'label': 'GTF2E2', '@id': '/targets/GTF2E2-human/', 'title': 'GTF2E2 (Homo sapiens)', 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'7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2961/'], '@type': ['Target', 'Item'], 'name': 'GTF2E2-human', 'label': 'GTF2E2', '@id': '/targets/GTF2E2-human/', 'title': 'GTF2E2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7ac16ca3-1ee6-4a41-b95b-222eda229f72', 'status': 'released'} hg19 8 30413856 30636691 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF422UWG/, /files/ENCFF807MUK/ 830638737 ENCODE Processing Pipeline 7e09fecfd21db80080354bcce5834c01 https://www.encodeproject.org/files/ENCFF577QBK/@@download/ENCFF577QBK.bam released s3://encode-public/2016/04/23/28ebe491-f776-4227-a654-132c49300c38/ENCFF577QBK.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF899NVB bam bam unfiltered alignments GRCh38 ENCSR021JFW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2961/'], '@type': ['Target', 'Item'], 'name': 'GTF2E2-human', 'label': 'GTF2E2', '@id': '/targets/GTF2E2-human/', 'title': 'GTF2E2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7ac16ca3-1ee6-4a41-b95b-222eda229f72', 'status': 'released'} hg19 8 30413856 30636691 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF422UWG/, /files/ENCFF643CGH/ 1087263245 ENCODE Processing Pipeline 1418ff6711c71454f53b7e1235ad8d1c https://www.encodeproject.org/files/ENCFF899NVB/@@download/ENCFF899NVB.bam released s3://encode-public/2016/05/06/0ba25a8c-8f96-4ae2-bdd3-81cf7a492222/ENCFF899NVB.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF093MXU bam bam alignments GRCh38 ENCSR021JFW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2961/'], '@type': ['Target', 'Item'], 'name': 'GTF2E2-human', 'label': 'GTF2E2', '@id': '/targets/GTF2E2-human/', 'title': 'GTF2E2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7ac16ca3-1ee6-4a41-b95b-222eda229f72', 'status': 'released'} hg19 8 30413856 30636691 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF422UWG/, /files/ENCFF643CGH/ 830207603 ENCODE Processing Pipeline 88d31abd57f18cd4920dd42e0d90ea02 https://www.encodeproject.org/files/ENCFF093MXU/@@download/ENCFF093MXU.bam released s3://encode-public/2016/05/06/bc390baf-aadc-498c-8388-6da0d9aeb6ea/ENCFF093MXU.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF823EZZ bam bam unfiltered alignments GRCh38 ENCSR021JFW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2961/'], '@type': ['Target', 'Item'], 'name': 'GTF2E2-human', 'label': 'GTF2E2', '@id': '/targets/GTF2E2-human/', 'title': 'GTF2E2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7ac16ca3-1ee6-4a41-b95b-222eda229f72', 'status': 'released'} hg19 8 30413856 30636691 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF422UWG/ 1086312535 ENCODE Processing Pipeline 831ad1d6c0a4b2f3d71586e2522fd559 https://www.encodeproject.org/files/ENCFF823EZZ/@@download/ENCFF823EZZ.bam released s3://encode-public/2020/10/27/070bf4b8-bb7a-4c44-b1fb-a652c105ff77/ENCFF823EZZ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF784ZPW bam bam alignments GRCh38 ENCSR021JFW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2961/'], '@type': ['Target', 'Item'], 'name': 'GTF2E2-human', 'label': 'GTF2E2', '@id': '/targets/GTF2E2-human/', 'title': 'GTF2E2 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7ac16ca3-1ee6-4a41-b95b-222eda229f72', 'status': 'released'} hg19 8 30413856 30636691 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF422UWG/ 870152959 ENCODE Processing Pipeline 870f7c64cd7660d040d1594616e6d03f https://www.encodeproject.org/files/ENCFF784ZPW/@@download/ENCFF784ZPW.bam released s3://encode-public/2020/10/27/98c7bef1-289c-4e35-9e42-e93c100136b8/ENCFF784ZPW.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF731PKL tagAlign tagAlign alignments hg19 ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF312JHP/ 156133510 Anshul Kundaje, Stanford 6d0d3d1f36783f0747297912b0bcf3bb https://www.encodeproject.org/files/ENCFF731PKL/@@download/ENCFF731PKL.tagAlign.gz archived s3://encode-public/2016/03/30/ea1b6e94-601e-4987-a0ae-10c45b41f6c7/ENCFF731PKL.tagAlign.gz Lab custom hg19 archived low read length ENCFF975QTX bam bam alignments GRCh38 ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF312JHP/, /files/ENCFF110MCL/ 994776317 ENCODE Processing Pipeline 36c74a28e538f1a2ce7791f1d919af60 https://www.encodeproject.org/files/ENCFF975QTX/@@download/ENCFF975QTX.bam released s3://encode-public/2020/10/08/8d227b23-d0d6-43ea-8b8a-7cd8b8226a92/ENCFF975QTX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF312JHP fastq fastq reads ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1128352945 Zhiping Weng, UMass 6150cee57e07db690f6cd2db2294b54c SRA:SRR401268 https://www.encodeproject.org/files/ENCFF312JHP/@@download/ENCFF312JHP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/e62e7c04-de99-4c2b-955a-d427fa35e0aa/ENCFF312JHP.fastq.gz low read length ENCFF712HLV bam bam unfiltered alignments GRCh38 ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF312JHP/ 1407218958 ENCODE Processing Pipeline cd6b4994afd0a84b2bf345bbb85fbded https://www.encodeproject.org/files/ENCFF712HLV/@@download/ENCFF712HLV.bam released s3://encode-public/2016/12/19/0e4b5e77-1711-457d-8369-b93c96407dff/ENCFF712HLV.bam ENCODE3 GRCh38 archived low read length ENCFF327PTM bam bam unfiltered alignments hg19 ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF312JHP/ 1399957379 ENCODE Processing Pipeline 2feddd8492c6b86c57b03fe96b50a380 https://www.encodeproject.org/files/ENCFF327PTM/@@download/ENCFF327PTM.bam released s3://encode-public/2016/12/19/e09b4073-4b6b-4495-a0e0-51db3055034b/ENCFF327PTM.bam ENCODE3 hg19 archived low read length ENCFF043HHU bam bam alignments GRCh38 ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF312JHP/ 897780051 ENCODE Processing Pipeline b246ee73b4fa523b4e28271ef2b8943c https://www.encodeproject.org/files/ENCFF043HHU/@@download/ENCFF043HHU.bam released s3://encode-public/2016/12/19/66f2a69c-7e26-49a1-bcde-27af1c6c7266/ENCFF043HHU.bam ENCODE3 GRCh38 archived low read length ENCFF600MLA bam bam alignments hg19 ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF312JHP/ 897807971 ENCODE Processing Pipeline c84d013198b242bb7135d73a91f682f9 https://www.encodeproject.org/files/ENCFF600MLA/@@download/ENCFF600MLA.bam released s3://encode-public/2016/12/19/67c8630a-c25c-43a2-b697-b8630f2c8108/ENCFF600MLA.bam ENCODE3 hg19 archived low read length ENCFF523MEG bam bam unfiltered alignments GRCh38 ENCSR890MJO Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF312JHP/, /files/ENCFF110MCL/ 1359949515 ENCODE Processing Pipeline 7d1011f3348214c10e59c8dde3186cc8 https://www.encodeproject.org/files/ENCFF523MEG/@@download/ENCFF523MEG.bam released s3://encode-public/2020/10/08/81ec2b28-930a-4f97-afd7-fe40b36695f3/ENCFF523MEG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF101HEA fastq fastq reads ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 214286242 Michael Snyder, Stanford 9e2a3fadbb438ea009b79d7c813f21f9 https://www.encodeproject.org/files/ENCFF101HEA/@@download/ENCFF101HEA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/74188d75-b6d4-4cb1-90e9-6c53fc499bd5/ENCFF101HEA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF296IPA fastq fastq reads ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 220320226 Michael Snyder, Stanford 82004ff09e7f6b53faab8c97cde65667 https://www.encodeproject.org/files/ENCFF296IPA/@@download/ENCFF296IPA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/a6444363-59ec-41d8-a060-7632783afe20/ENCFF296IPA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF186AZI bam bam alignments ce10 ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF296IPA/, /files/ENCFF101HEA/, /files/ENCFF987UMF/ 571526925 Kevin White, UChicago 0e028673e913863936162a75dc3cb2cc https://www.encodeproject.org/files/ENCFF186AZI/@@download/ENCFF186AZI.bam released s3://encode-public/2016/10/18/2e5ca029-2fd2-4b4b-b529-c4b4038fd994/ENCFF186AZI.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF717WPV bam bam alignments ce11 ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF296IPA/, /files/ENCFF101HEA/, /files/ENCFF586MOL/ 572129759 Kevin White, UChicago 269e15df9b9f14dc9912150d3625330c https://www.encodeproject.org/files/ENCFF717WPV/@@download/ENCFF717WPV.bam released s3://encode-public/2016/10/19/c5941ece-dab7-4a33-a7b3-fa778895b120/ENCFF717WPV.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF069UCK bigWig bigWig read-depth normalized signal ce10 ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF186AZI/ 10006188 Kevin White, UChicago 65080158ad14f99a4e3414247a428239 https://www.encodeproject.org/files/ENCFF069UCK/@@download/ENCFF069UCK.bigWig released s3://encode-public/2016/10/20/2c0e6f7b-e0e6-4c9c-97f5-5b42cf1ec234/ENCFF069UCK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF778UWK bigWig bigWig signal of unique reads ce10 ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF186AZI/ 9980428 Kevin White, UChicago 23f3270abd9db4e32acbd1bc35be6989 https://www.encodeproject.org/files/ENCFF778UWK/@@download/ENCFF778UWK.bigWig released s3://encode-public/2016/10/20/f5d6a2c5-f364-4a7a-9754-05d377b5c61f/ENCFF778UWK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF548UPG bigWig bigWig signal of unique reads ce11 ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF717WPV/ 9980500 Kevin White, UChicago 680954c23b2e51c47dca2db7aeaf16bc https://www.encodeproject.org/files/ENCFF548UPG/@@download/ENCFF548UPG.bigWig released s3://encode-public/2016/10/21/88153408-fdfc-4c01-a5c3-0ca20d8a6ad5/ENCFF548UPG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF238JMY bigWig bigWig read-depth normalized signal ce11 ENCSR374KTM Control ChIP-seq /worm-donors/ENCDO843EAE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178024/'], '@type': ['Target', 'Item'], 'name': 'nhr-67-celegans', 'label': 'nhr-67', '@id': '/targets/nhr-67-celegans/', 'title': 'nhr-67 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1ddf3906-4f69-49ec-b167-96ea84390aa5', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF717WPV/ 10008685 Kevin White, UChicago a24e2472982985c601d99063869898d1 https://www.encodeproject.org/files/ENCFF238JMY/@@download/ENCFF238JMY.bigWig released s3://encode-public/2016/10/21/7867555c-ba4a-493e-b223-c5952e351c99/ENCFF238JMY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF684OAZ fastq fastq reads ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 17322847 Michael Snyder, Stanford ab413dd18c7a7257c6f029bef3d0c94b https://www.encodeproject.org/files/ENCFF684OAZ/@@download/ENCFF684OAZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/08b98a07-1f9b-49fe-a448-2de25ae42a45/ENCFF684OAZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF775VFY fastq fastq reads ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 38929757 Michael Snyder, Stanford d1a8de9dc55bd551e8e2f71fc5f202e9 https://www.encodeproject.org/files/ENCFF775VFY/@@download/ENCFF775VFY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4bb260ac-3b48-4c89-bbfa-96113e8b456f/ENCFF775VFY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF203QEV fastq fastq reads ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 66866191 Michael Snyder, Stanford 190680edf96ff69e8ad0d89e3f7fde56 https://www.encodeproject.org/files/ENCFF203QEV/@@download/ENCFF203QEV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/cc0ca0a7-2ddb-4504-a5e0-a08a0d5877a9/ENCFF203QEV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF700SDO fastq fastq reads ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 4 4_1 33 single-ended 78903786 Michael Snyder, Stanford be5f824a63f21840b776952fe1780650 https://www.encodeproject.org/files/ENCFF700SDO/@@download/ENCFF700SDO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/51d3c7f7-3ec4-4ac2-b202-c39614bbd6cf/ENCFF700SDO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF342KUC bam bam alignments ce10 ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 32 /files/ENCFF684OAZ/, /files/ENCFF775VFY/, /files/ENCFF203QEV/, /files/ENCFF987UMF/, /files/ENCFF700SDO/ 273147601 Kevin White, UChicago 445695c5bee53aa98123fcd096a41719 https://www.encodeproject.org/files/ENCFF342KUC/@@download/ENCFF342KUC.bam released s3://encode-public/2017/04/27/7481bf80-0eb5-4acd-ab9d-7f3e027e771e/ENCFF342KUC.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF202BPR bam bam alignments ce11 ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 32 /files/ENCFF684OAZ/, /files/ENCFF775VFY/, /files/ENCFF203QEV/, /files/ENCFF586MOL/, /files/ENCFF700SDO/ 273466314 Kevin White, UChicago 9f8ab8162ed5c54eb468280d00bd3e10 https://www.encodeproject.org/files/ENCFF202BPR/@@download/ENCFF202BPR.bam released s3://encode-public/2017/04/27/1f48c861-96aa-4545-9924-76cbb20415ce/ENCFF202BPR.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF549JZR bigWig bigWig read-depth normalized signal ce10 ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF342KUC/ 10003038 Kevin White, UChicago 1a56e2b68f08d3375f4b0a5562e00526 https://www.encodeproject.org/files/ENCFF549JZR/@@download/ENCFF549JZR.bigWig released s3://encode-public/2017/04/29/9f070a63-331c-4711-96f0-d769b86e9a0c/ENCFF549JZR.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF168UHJ bigWig bigWig signal of unique reads ce10 ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF342KUC/ 10034486 Kevin White, UChicago 6f13ab2c8db20b9abf8d9b86bb1ba8ca https://www.encodeproject.org/files/ENCFF168UHJ/@@download/ENCFF168UHJ.bigWig released s3://encode-public/2017/04/29/bd3b9628-2141-497a-81a1-4e896b694766/ENCFF168UHJ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF839HAH bigWig bigWig read-depth normalized signal ce11 ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF202BPR/ 10001363 Kevin White, UChicago 25641d5e2ad664de38e4af0d0427092a https://www.encodeproject.org/files/ENCFF839HAH/@@download/ENCFF839HAH.bigWig released s3://encode-public/2017/04/29/87378e8a-ed13-466d-8e52-a28b48cbcd8f/ENCFF839HAH.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF976NOU bigWig bigWig signal of unique reads ce11 ENCSR009OQO Control ChIP-seq /worm-donors/ENCDO705PPA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173738/'], '@type': ['Target', 'Item'], 'name': 'sea-2-celegans', 'label': 'sea-2', '@id': '/targets/sea-2-celegans/', 'title': 'sea-2 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'fb11636d-1092-4e97-8347-3c7f94974d92', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF202BPR/ 10029511 Kevin White, UChicago e08ad7a0187c610b3e93f401b2f3d16b https://www.encodeproject.org/files/ENCFF976NOU/@@download/ENCFF976NOU.bigWig released s3://encode-public/2017/04/29/2f0bd887-2f45-4543-adfb-72f9a6aa6ebd/ENCFF976NOU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF202TAY bam bam unfiltered alignments hg19 ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF860ICW/, /files/ENCFF807MUK/, /files/ENCFF406VEB/ 1788521121 ENCODE Processing Pipeline 9c71a0891128ba3958bcf21fede8eee5 https://www.encodeproject.org/files/ENCFF202TAY/@@download/ENCFF202TAY.bam released s3://encode-public/2018/02/22/6eb1e57e-6da6-4702-bbe5-8b8e4ed18b12/ENCFF202TAY.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF406VEB fastq fastq reads ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 805454510 Kevin White, UChicago 67377591f12be5b37950d2580041e0b2 SRA:SRR6212870 https://www.encodeproject.org/files/ENCFF406VEB/@@download/ENCFF406VEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF860ICW/ released s3://encode-public/2016/03/14/4ea2ea27-0ebf-4ab7-b92a-f473f69d53ff/ENCFF406VEB.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF860ICW fastq fastq reads ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 790007481 Kevin White, UChicago 2542cc3d04b235bda28b7a9556429c3b SRA:SRR6212871 https://www.encodeproject.org/files/ENCFF860ICW/@@download/ENCFF860ICW.fastq.gz Illumina HiSeq 2500 /files/ENCFF406VEB/ released s3://encode-public/2016/03/15/604063f2-a1d1-47bb-b439-7a46e41162e9/ENCFF860ICW.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF987QVP bam bam alignments hg19 ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF860ICW/, /files/ENCFF807MUK/, /files/ENCFF406VEB/ 1419469522 ENCODE Processing Pipeline e9e7762168f57548d61403e99e3194fe https://www.encodeproject.org/files/ENCFF987QVP/@@download/ENCFF987QVP.bam released s3://encode-public/2016/04/23/8d415e5e-df27-4a78-b38e-f1c6982236e1/ENCFF987QVP.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF558JDT bam bam unfiltered alignments GRCh38 ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF860ICW/, /files/ENCFF406VEB/, /files/ENCFF643CGH/ 1798758625 ENCODE Processing Pipeline 5e3b7eccbbfed49990d2039ef7ec474a https://www.encodeproject.org/files/ENCFF558JDT/@@download/ENCFF558JDT.bam released s3://encode-public/2016/05/06/92042cd7-0ce9-4b5b-aa68-8a77626a5311/ENCFF558JDT.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF422LHK bam bam alignments GRCh38 ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF860ICW/, /files/ENCFF406VEB/, /files/ENCFF643CGH/ 1419117433 ENCODE Processing Pipeline fe8d444c564fb5763664a25b3791e5e9 https://www.encodeproject.org/files/ENCFF422LHK/@@download/ENCFF422LHK.bam released s3://encode-public/2016/05/06/e90b012b-58f0-4cd9-b747-26832208bb1c/ENCFF422LHK.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF177XSY bam bam unfiltered alignments GRCh38 ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF860ICW/, /files/ENCFF110MCL/, /files/ENCFF406VEB/ 1778774638 ENCODE Processing Pipeline e7318b19b903b23b2b680f8b9a0cf648 https://www.encodeproject.org/files/ENCFF177XSY/@@download/ENCFF177XSY.bam released s3://encode-public/2020/10/27/97842e68-abd0-4736-8969-c5ab28b5a727/ENCFF177XSY.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF129BJJ bam bam alignments GRCh38 ENCSR167UME Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9314/'], '@type': ['Target', 'Item'], 'name': 'KLF4-human', 'label': 'KLF4', '@id': '/targets/KLF4-human/', 'title': 'KLF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5126ed9e-18f2-4a8c-a738-c501c70644f4', 'status': 'released'} hg19 9 110229008 110431066 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF860ICW/, /files/ENCFF110MCL/, /files/ENCFF406VEB/ 1485906236 ENCODE Processing Pipeline f4c6846432405900d58d40500d8b7cdf https://www.encodeproject.org/files/ENCFF129BJJ/@@download/ENCFF129BJJ.bam released s3://encode-public/2020/10/27/00664d25-1df7-4463-a745-022c4d234879/ENCFF129BJJ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF749XWW fastq fastq reads ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 219493165 Michael Snyder, Stanford 831dddd90a7ca7bd32fa0510eb11841a https://www.encodeproject.org/files/ENCFF749XWW/@@download/ENCFF749XWW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d36233dc-6282-40e0-8504-6946ca6e8f9d/ENCFF749XWW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF603EYY fastq fastq reads ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 226475034 Michael Snyder, Stanford 464806af15da555d783a56aba1f81fff https://www.encodeproject.org/files/ENCFF603EYY/@@download/ENCFF603EYY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b8d7c282-1445-4866-afc4-6b23d89b904f/ENCFF603EYY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF167UGD bam bam alignments ce10 ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF749XWW/, /files/ENCFF603EYY/, /files/ENCFF987UMF/ 582186289 Kevin White, UChicago 75a8508f504133a27f1408dba9ab366f https://www.encodeproject.org/files/ENCFF167UGD/@@download/ENCFF167UGD.bam released s3://encode-public/2016/10/18/2e6ca768-b437-44a1-8669-f6d67af60583/ENCFF167UGD.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF685POG bam bam alignments ce11 ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF749XWW/, /files/ENCFF603EYY/, /files/ENCFF586MOL/ 582820717 Kevin White, UChicago 3853f086bfc07b7c0dd5e225c641ed6a https://www.encodeproject.org/files/ENCFF685POG/@@download/ENCFF685POG.bam released s3://encode-public/2016/10/19/e4228b11-7fd2-4af0-830e-83b17b3cd484/ENCFF685POG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF676ZLY bigWig bigWig read-depth normalized signal ce10 ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF167UGD/ 10016259 Kevin White, UChicago 7e819988ab56deb238c76ad867a4f8ff https://www.encodeproject.org/files/ENCFF676ZLY/@@download/ENCFF676ZLY.bigWig released s3://encode-public/2016/10/20/985af201-0fc9-4862-ac7c-22e3d9a7ee65/ENCFF676ZLY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF146QVZ bigWig bigWig signal of unique reads ce10 ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF167UGD/ 9995349 Kevin White, UChicago 85de29a61523f29907c1dc290e9cf10e https://www.encodeproject.org/files/ENCFF146QVZ/@@download/ENCFF146QVZ.bigWig released s3://encode-public/2016/10/20/7d314af6-8931-4c52-a177-71b7bc63ae2c/ENCFF146QVZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF183TDA bigWig bigWig read-depth normalized signal ce11 ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF685POG/ 10011815 Kevin White, UChicago aa541b4df09142e011583d3b27a92728 https://www.encodeproject.org/files/ENCFF183TDA/@@download/ENCFF183TDA.bigWig released s3://encode-public/2016/10/21/40bd9c14-81e7-4e16-ad4d-d5e021cb50e3/ENCFF183TDA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF820TTO bigWig bigWig signal of unique reads ce11 ENCSR790PHS Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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1376798433 Bradley Bernstein, Broad 516771aa47f14ebe952ff7d1fcf85c64 SRA:SRR5833138 https://www.encodeproject.org/files/ENCFF294RSN/@@download/ENCFF294RSN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/4381e3d6-ed76-4083-8812-bb5697ffcc33/ENCFF294RSN.fastq.gz ENCFF202XJD fastq fastq reads ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1335897770 Bradley Bernstein, Broad fa7f96688c5943c3ee084e0429713b60 SRA:SRR5833139 https://www.encodeproject.org/files/ENCFF202XJD/@@download/ENCFF202XJD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/7937bbf0-30b0-4342-9b91-780946c9e17c/ENCFF202XJD.fastq.gz ENCFF415NBZ fastq fastq reads ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 119131476 Bradley Bernstein, Broad 249909f466a3f279bafe81b710ca1bd8 SRA:SRR5833140 https://www.encodeproject.org/files/ENCFF415NBZ/@@download/ENCFF415NBZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/9aa3c842-092e-4f77-8ad7-eff9dbfdcdcf/ENCFF415NBZ.fastq.gz ENCFF914QDH fastq fastq reads ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 122146020 Bradley Bernstein, Broad 61ebcdc816ab742cca1c62c4da2b4671 SRA:SRR5833141 https://www.encodeproject.org/files/ENCFF914QDH/@@download/ENCFF914QDH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/a7be2b40-b992-46c0-9ef6-d450c5b0f28c/ENCFF914QDH.fastq.gz ENCFF357AON bam bam unfiltered alignments hg19 ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF294RSN/, /files/ENCFF807MUK/, /files/ENCFF415NBZ/, /files/ENCFF914QDH/, /files/ENCFF202XJD/ 2854411701 ENCODE Processing Pipeline 712c141b8044e91d5df396e1d6c7cabe https://www.encodeproject.org/files/ENCFF357AON/@@download/ENCFF357AON.bam released s3://encode-public/2016/10/27/d1e24521-61e3-4516-b578-f05767ccde77/ENCFF357AON.bam ENCODE3 hg19 archived ENCFF941ESK bam bam unfiltered alignments GRCh38 ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF294RSN/, /files/ENCFF643CGH/, /files/ENCFF415NBZ/, /files/ENCFF914QDH/, /files/ENCFF202XJD/ 2862610926 ENCODE Processing Pipeline c8d11c3162de9e4d33777965d2fb9c62 https://www.encodeproject.org/files/ENCFF941ESK/@@download/ENCFF941ESK.bam released s3://encode-public/2016/10/27/7d9183ac-c2f9-4dd2-9005-b98e9fc828a9/ENCFF941ESK.bam ENCODE3 GRCh38 archived ENCFF128CEV bam bam alignments GRCh38 ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF294RSN/, /files/ENCFF643CGH/, /files/ENCFF415NBZ/, /files/ENCFF914QDH/, /files/ENCFF202XJD/ 2399539415 ENCODE Processing Pipeline c8200b54a158429163ee3bddabd1d062 https://www.encodeproject.org/files/ENCFF128CEV/@@download/ENCFF128CEV.bam released s3://encode-public/2016/10/27/b47999b4-6612-4159-8811-8cbb3f4d4036/ENCFF128CEV.bam ENCODE3 GRCh38 archived ENCFF324FZL bam bam alignments hg19 ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF294RSN/, /files/ENCFF807MUK/, /files/ENCFF415NBZ/, /files/ENCFF914QDH/, /files/ENCFF202XJD/ 2396738780 ENCODE Processing Pipeline 43226147a953b5d929d387609e85d0bd https://www.encodeproject.org/files/ENCFF324FZL/@@download/ENCFF324FZL.bam released s3://encode-public/2016/10/27/e7c5641e-00a5-4de0-83a3-2d446e6fbadf/ENCFF324FZL.bam ENCODE3 hg19 archived ENCFF503JQL bam bam unfiltered alignments GRCh38 ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF202XJD/, /files/ENCFF415NBZ/, /files/ENCFF294RSN/, /files/ENCFF914QDH/, /files/ENCFF110MCL/ 2894227880 ENCODE Processing Pipeline 9b068ece98155a908ba50a0cf8c71fe3 https://www.encodeproject.org/files/ENCFF503JQL/@@download/ENCFF503JQL.bam released s3://encode-public/2020/08/20/3fab2e8a-eca0-49c0-925a-3476547886dc/ENCFF503JQL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF203XKK bam bam alignments GRCh38 ENCSR043UWF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF202XJD/, /files/ENCFF415NBZ/, /files/ENCFF294RSN/, /files/ENCFF914QDH/, /files/ENCFF110MCL/ 2452476381 ENCODE Processing Pipeline 3612b43b7f663ffecce315376501de04 https://www.encodeproject.org/files/ENCFF203XKK/@@download/ENCFF203XKK.bam released s3://encode-public/2020/08/20/7e5eeff0-6c2e-456f-b926-36cca94a11aa/ENCFF203XKK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF026FDT bam bam unfiltered alignments hg19 ENCSR856HWY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF035QZC/ 1310401843 ENCODE Processing Pipeline 8681d07f6034b3072eebca3f77a31776 https://www.encodeproject.org/files/ENCFF026FDT/@@download/ENCFF026FDT.bam released s3://encode-public/2018/02/22/a118050b-4523-4a3d-a6c9-844ef3bc6bf7/ENCFF026FDT.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF035QZC fastq fastq reads ENCSR856HWY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 1144543613 Richard Myers, HAIB be72475a5af0651dbbdec1615f86ad65 SRA:SRR8660268 https://www.encodeproject.org/files/ENCFF035QZC/@@download/ENCFF035QZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/ca26ee48-b8e7-4bf0-9b27-9e3a458af5c4/ENCFF035QZC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF447FCN bam bam unfiltered alignments GRCh38 ENCSR856HWY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 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'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF035QZC/ 1011639300 ENCODE Processing Pipeline 322baee1217ecfa8b029ed8b5a8bb285 https://www.encodeproject.org/files/ENCFF272HGR/@@download/ENCFF272HGR.bam released s3://encode-public/2016/05/07/9857c57c-36bc-499d-8f11-c0a5ca315fa5/ENCFF272HGR.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF112UEK bam bam alignments GRCh38 ENCSR856HWY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF035QZC/ 1069231002 ENCODE Processing Pipeline b952ef9f43eabf1a09af73d977a6344d https://www.encodeproject.org/files/ENCFF112UEK/@@download/ENCFF112UEK.bam released s3://encode-public/2020/10/27/00b3fe38-f478-4f6c-8a8f-31927636c6a1/ENCFF112UEK.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF919HVP bam bam unfiltered alignments GRCh38 ENCSR856HWY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF035QZC/ 1292839190 ENCODE Processing Pipeline 7a1b2ba07e7dddecbcf3e15a31726c3a https://www.encodeproject.org/files/ENCFF919HVP/@@download/ENCFF919HVP.bam released s3://encode-public/2020/10/27/0e5d9837-4d9d-49c5-9ca6-527b17f3fab7/ENCFF919HVP.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF128NIB fastq fastq reads ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1 1_1 34 single-ended 137383189 Kevin White, UChicago d5257584911d22c9661343973e3e6320 https://www.encodeproject.org/files/ENCFF128NIB/@@download/ENCFF128NIB.fastq.gz Illumina Genome Analyzer I /files/ENCFF179FZW/, /files/ENCFF592NJW/ released s3://encode-public/2016/10/25/e165e004-bca7-4ab5-8d36-0a8b67d3b329/ENCFF128NIB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF094QNO fastq fastq reads ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': 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'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 2 2_1 34 single-ended 132828226 Kevin White, UChicago d533d860c8ada9985c99d436ce470749 https://www.encodeproject.org/files/ENCFF122TPK/@@download/ENCFF122TPK.fastq.gz Illumina Genome Analyzer I /files/ENCFF179FZW/, /files/ENCFF592NJW/ released s3://encode-public/2016/10/25/5b926842-6fe0-4583-8c4c-8288b52c14ba/ENCFF122TPK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF881IXV fastq fastq reads ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 2 2_1 34 single-ended 166084144 Kevin White, UChicago 8942af9fbee346770e00a77ac89a5bd6 https://www.encodeproject.org/files/ENCFF881IXV/@@download/ENCFF881IXV.fastq.gz Illumina Genome Analyzer I /files/ENCFF179FZW/, /files/ENCFF592NJW/ released s3://encode-public/2016/10/25/04beb13a-efc0-4939-93de-877952135cfb/ENCFF881IXV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF607QNX bam bam alignments ce10 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1 1_1 34 /files/ENCFF128NIB/, /files/ENCFF094QNO/, /files/ENCFF987UMF/ 236158265 Kevin White, UChicago 9a265fbbf5ec56ffacab8be1e7105780 https://www.encodeproject.org/files/ENCFF607QNX/@@download/ENCFF607QNX.bam released s3://encode-public/2016/10/26/ab8041bb-ac94-4423-ae82-2728948a96d1/ENCFF607QNX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF619PIC bam bam alignments ce10 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 2 2_1 34 /files/ENCFF881IXV/, /files/ENCFF122TPK/, /files/ENCFF987UMF/ 243822195 Kevin White, UChicago 69781b1ce40e5f32e468314e22fe4ca6 https://www.encodeproject.org/files/ENCFF619PIC/@@download/ENCFF619PIC.bam released s3://encode-public/2016/10/26/7a322ff6-9cf3-4b6c-9cb2-6fa0e6090e14/ENCFF619PIC.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF042NWG bam bam alignments ce11 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1 1_1 34 /files/ENCFF128NIB/, /files/ENCFF094QNO/, /files/ENCFF586MOL/ 236324442 Kevin White, UChicago 6870bf165263b07156fb1f8af94a637d https://www.encodeproject.org/files/ENCFF042NWG/@@download/ENCFF042NWG.bam released s3://encode-public/2016/10/26/0250f449-17f2-44e7-bdec-617e6075d083/ENCFF042NWG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF195COP bam bam alignments ce11 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 2 2_1 34 /files/ENCFF881IXV/, /files/ENCFF122TPK/, /files/ENCFF586MOL/ 243966499 Kevin White, UChicago 27217e6eafcbd05abde578ecc89e40c3 https://www.encodeproject.org/files/ENCFF195COP/@@download/ENCFF195COP.bam released s3://encode-public/2016/10/26/e5182ba2-c74c-4f5c-83c7-55552d358dc2/ENCFF195COP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF743MMR bigWig bigWig read-depth normalized signal ce10 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF607QNX/, /files/ENCFF619PIC/ 9929314 Kevin White, UChicago 04a53227ba50b57fcfe956d5d92a659e https://www.encodeproject.org/files/ENCFF743MMR/@@download/ENCFF743MMR.bigWig released s3://encode-public/2016/10/26/e7901bdd-ae30-4c3d-ab8a-73fea8061557/ENCFF743MMR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF885DAL bigWig bigWig signal of unique reads ce10 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF607QNX/, /files/ENCFF619PIC/ 9928272 Kevin White, UChicago 8f2535ffe9f918d1e78cc9393fc16fe2 https://www.encodeproject.org/files/ENCFF885DAL/@@download/ENCFF885DAL.bigWig released s3://encode-public/2016/10/26/2f9cb645-03ed-4ed4-9dcd-c39016b3ac82/ENCFF885DAL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF372ILK bigWig bigWig signal of unique reads ce11 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF042NWG/, /files/ENCFF195COP/ 9924510 Kevin White, UChicago 32d6c989ba5e4c863686ce52b372641e https://www.encodeproject.org/files/ENCFF372ILK/@@download/ENCFF372ILK.bigWig released s3://encode-public/2016/10/26/9d528423-44ee-4914-bac2-c5b75c1e8d33/ENCFF372ILK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF608GLP bigWig bigWig read-depth normalized signal ce11 ENCSR531CCR Control ChIP-seq /worm-donors/ENCDO868VVZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177249/'], '@type': ['Target', 'Item'], 'name': 'eor-1-celegans', 'label': 'eor-1', '@id': '/targets/eor-1-celegans/', 'title': 'eor-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'be75878b-d0c2-4ad4-ba4f-7bfd97d0d31e', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF042NWG/, /files/ENCFF195COP/ 9926352 Kevin White, UChicago b3d8029e197c91095be15007b09a0f0d https://www.encodeproject.org/files/ENCFF608GLP/@@download/ENCFF608GLP.bigWig released s3://encode-public/2016/10/26/a27f927e-a3e6-419f-8779-d147913c869e/ENCFF608GLP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF075RAH fastq fastq reads ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 71315362 Michael Snyder, Stanford 8d73f464dc6dd816b444025ec6316866 https://www.encodeproject.org/files/ENCFF075RAH/@@download/ENCFF075RAH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/94ca6193-c83a-4449-b2f0-4302713ee645/ENCFF075RAH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF184VBP fastq fastq reads ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 42070072 Michael Snyder, Stanford d17fbe4d8e7af60fdd30a4ef68b07868 https://www.encodeproject.org/files/ENCFF184VBP/@@download/ENCFF184VBP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/be9d41e5-f359-46bc-8e8b-6ba8d4f4b402/ENCFF184VBP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF852FAL bam bam alignments ce10 ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF184VBP/, /files/ENCFF075RAH/, /files/ENCFF987UMF/ 143628366 Kevin White, UChicago f0a8d4be10919adfaf75563f748ed117 https://www.encodeproject.org/files/ENCFF852FAL/@@download/ENCFF852FAL.bam released s3://encode-public/2016/10/18/4eb2a5e4-ab06-40ea-a6e3-ed4f8677875a/ENCFF852FAL.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF904DXM bam bam alignments ce11 ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF184VBP/, /files/ENCFF075RAH/, /files/ENCFF586MOL/ 143765027 Kevin White, UChicago e4d030830aea9ab924736b3a8a16d47d https://www.encodeproject.org/files/ENCFF904DXM/@@download/ENCFF904DXM.bam released s3://encode-public/2016/10/18/22c7f8a9-fd0d-4ae8-87da-ce3dbb0c9c19/ENCFF904DXM.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF222RLO bigWig bigWig read-depth normalized signal ce10 ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF852FAL/ 10058454 Kevin White, UChicago 94ed6d6322070ca6519cc1cceb8cc917 https://www.encodeproject.org/files/ENCFF222RLO/@@download/ENCFF222RLO.bigWig released s3://encode-public/2016/10/20/d0a18734-685d-4cdf-bc04-d43cb2e4a0fa/ENCFF222RLO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF825CCD bigWig bigWig signal of unique reads ce10 ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF852FAL/ 10052732 Kevin White, UChicago c215fb6bcb0937e4e12d044da864612a https://www.encodeproject.org/files/ENCFF825CCD/@@download/ENCFF825CCD.bigWig released s3://encode-public/2016/10/20/c4218adb-c2f0-4d76-a6dc-ee78d28df1ea/ENCFF825CCD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF147VSV bigWig bigWig read-depth normalized signal ce11 ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF904DXM/ 10044036 Kevin White, UChicago 766d3041cf4010cd1ae0a2368c0411e9 https://www.encodeproject.org/files/ENCFF147VSV/@@download/ENCFF147VSV.bigWig released s3://encode-public/2016/10/20/41096f91-8679-44d7-aefc-ebde8f5aa788/ENCFF147VSV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF109SLJ bigWig bigWig signal of unique reads ce11 ENCSR748QRA Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF904DXM/ 10035113 Kevin White, UChicago 1b5145e12440fcc64378b7f7852da1cd https://www.encodeproject.org/files/ENCFF109SLJ/@@download/ENCFF109SLJ.bigWig released s3://encode-public/2016/10/20/f6711385-83a8-4835-8830-77f0873f1b31/ENCFF109SLJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF467MSO fastq fastq reads ENCSR688DOF Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 127872248 Michael Snyder, Stanford 8fdca412bd73ccdc727f8945f010c64c https://www.encodeproject.org/files/ENCFF467MSO/@@download/ENCFF467MSO.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/4a3f9a12-608d-4198-8900-a27fde00d96e/ENCFF467MSO.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF530NCC fastq fastq reads ENCSR688DOF Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 120994418 Kevin White, UChicago 376e3426ea214bbb149732973c978829 https://www.encodeproject.org/files/ENCFF530NCC/@@download/ENCFF530NCC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF602CKG/, /files/ENCFF060CXV/ archived s3://encode-public/2016/10/25/0f923ed5-03ca-4ce1-83e5-3d6b8bff2100/ENCFF530NCC.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF497UCA fastq fastq reads ENCSR258GSA Control ChIP-seq /human-donors/ENCDO461DJY/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 441143056 Bradley Bernstein, Broad b8726d73135b4674baf367c8e772f381 SRA:SRR14637779 https://www.encodeproject.org/files/ENCFF497UCA/@@download/ENCFF497UCA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/4bb576b1-db84-484e-8d3c-95d787cdfbcb/ENCFF497UCA.fastq.gz ENCFF383HHN fastq fastq reads ENCSR258GSA Control ChIP-seq /human-donors/ENCDO461DJY/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 438638721 Bradley Bernstein, Broad 1838ba97da105a3620e4fb5865d25ef1 SRA:SRR14637780 https://www.encodeproject.org/files/ENCFF383HHN/@@download/ENCFF383HHN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/ffb1f2f9-7b3b-492f-95cd-f93f210949a9/ENCFF383HHN.fastq.gz ENCFF108JRZ fastq fastq reads ENCSR258GSA Control ChIP-seq /human-donors/ENCDO461DJY/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 452949161 Bradley Bernstein, Broad 35c4b32715cac8081c10ea6abc5ffd35 SRA:SRR14637781 https://www.encodeproject.org/files/ENCFF108JRZ/@@download/ENCFF108JRZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/31ac4fa9-c988-44f0-b2e3-8d45ca492b56/ENCFF108JRZ.fastq.gz ENCFF614GBX fastq fastq reads ENCSR258GSA Control ChIP-seq /human-donors/ENCDO461DJY/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1 76 single-ended 438674826 Bradley Bernstein, Broad 6335c98365e679e2f0968133dd090240 SRA:SRR14637782 https://www.encodeproject.org/files/ENCFF614GBX/@@download/ENCFF614GBX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/045a0547-4a93-490f-8fff-b5e25ecfef0a/ENCFF614GBX.fastq.gz ENCFF500AKN fastq fastq reads ENCSR258GSA Control ChIP-seq 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middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 439538924 Bradley Bernstein, Broad 2d2cfbd0d1f0d5479f00dea7eeb07a41 SRA:SRR14637777 https://www.encodeproject.org/files/ENCFF724DXA/@@download/ENCFF724DXA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/ae0cfe72-5fa2-4f23-9a4b-fae369567af5/ENCFF724DXA.fastq.gz ENCFF994STX fastq fastq reads ENCSR258GSA Control ChIP-seq /human-donors/ENCDO461DJY/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_2 76 single-ended 446136502 Bradley Bernstein, Broad 67818ff839ba8e4d87d7da2e0d5c5d0b SRA:SRR14637778 https://www.encodeproject.org/files/ENCFF994STX/@@download/ENCFF994STX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/01/28/d66d0945-2867-48fc-9d6f-739e9a8500a0/ENCFF994STX.fastq.gz ENCFF629ZVG bam bam alignments GRCh38 ENCSR258GSA Control ChIP-seq /human-donors/ENCDO461DJY/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF994STX/, /files/ENCFF497UCA/, /files/ENCFF108JRZ/, /files/ENCFF500AKN/, /files/ENCFF724DXA/, /files/ENCFF383HHN/, /files/ENCFF845FOM/, /files/ENCFF614GBX/ 2851544827 ENCODE Processing Pipeline fde4f6d461dc37b67cbd30a9ffb69fb0 https://www.encodeproject.org/files/ENCFF629ZVG/@@download/ENCFF629ZVG.bam released s3://encode-public/2021/04/09/af46b764-ffb9-432a-a513-a5981b525a3b/ENCFF629ZVG.bam ENCODE4 v1.8.0 GRCh38 released ENCFF508AXZ bam bam unfiltered alignments GRCh38 ENCSR258GSA Control ChIP-seq /human-donors/ENCDO461DJY/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-04-12 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF994STX/, /files/ENCFF497UCA/, /files/ENCFF108JRZ/, /files/ENCFF500AKN/, /files/ENCFF724DXA/, /files/ENCFF383HHN/, /files/ENCFF845FOM/, /files/ENCFF614GBX/ 3486164109 ENCODE Processing Pipeline 905ed252f1806afa4e3fa6c0a1aeb979 https://www.encodeproject.org/files/ENCFF508AXZ/@@download/ENCFF508AXZ.bam released s3://encode-public/2021/04/09/6bb269cd-f901-4ea6-a8cc-52a8f58834e1/ENCFF508AXZ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF372GDR fastq fastq reads ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 181508396 Michael Snyder, Stanford 7cfccba5b31b4153632c5b0ea2000329 https://www.encodeproject.org/files/ENCFF372GDR/@@download/ENCFF372GDR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2f2f915d-bd26-4c02-8983-38732cedf2fa/ENCFF372GDR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF825KUG fastq fastq reads ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 151516189 Michael Snyder, Stanford 140f1227bd98ce52f2410fca5871b8be https://www.encodeproject.org/files/ENCFF825KUG/@@download/ENCFF825KUG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6269fb4c-0f84-4195-9197-1d5bee27eac5/ENCFF825KUG.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF702BRS fastq fastq reads ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF372GDR/, /files/ENCFF825KUG/, /files/ENCFF702BRS/, /files/ENCFF987UMF/ 680229004 Kevin White, UChicago d055830de0ae496da79891d61d2816ee https://www.encodeproject.org/files/ENCFF371XRQ/@@download/ENCFF371XRQ.bam released s3://encode-public/2016/10/18/e943a977-1e8d-4026-bc15-aab9a5908ffc/ENCFF371XRQ.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF732KYT bam bam alignments ce11 ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF372GDR/, /files/ENCFF825KUG/, /files/ENCFF702BRS/, /files/ENCFF586MOL/ 680959475 Kevin White, UChicago cf7076a314e765c5aae34a450147d62f https://www.encodeproject.org/files/ENCFF732KYT/@@download/ENCFF732KYT.bam released s3://encode-public/2016/10/18/c605adc3-b990-4cbe-8a52-f70221eebbc0/ENCFF732KYT.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF458EWW bigWig bigWig read-depth normalized signal ce10 ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF371XRQ/ 10026529 Kevin White, UChicago 7388fd52d51c92f7b070e4be7903623b https://www.encodeproject.org/files/ENCFF458EWW/@@download/ENCFF458EWW.bigWig released s3://encode-public/2016/10/20/7dc0519f-4183-48c2-9cc1-e3971d058ced/ENCFF458EWW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF960IIK bigWig bigWig signal of unique reads ce10 ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF371XRQ/ 10025456 Kevin White, UChicago 52ece949190e43f09438d6c931364d12 https://www.encodeproject.org/files/ENCFF960IIK/@@download/ENCFF960IIK.bigWig released s3://encode-public/2016/10/20/23cb182f-d186-4431-802b-6e4ed7b2cec9/ENCFF960IIK.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF558EYT bigWig bigWig read-depth normalized signal ce11 ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF732KYT/ 10017920 Kevin White, UChicago 05fa8145a3e74c7267bb9cf48933ea66 https://www.encodeproject.org/files/ENCFF558EYT/@@download/ENCFF558EYT.bigWig released s3://encode-public/2016/10/21/8f31e62a-498f-4a74-bcc7-683b489aeb78/ENCFF558EYT.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF939SUR bigWig bigWig signal of unique reads ce11 ENCSR415CLB Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF732KYT/ 10022545 Kevin White, UChicago 7c6ea63888dd56f1fae51ab480b50b56 https://www.encodeproject.org/files/ENCFF939SUR/@@download/ENCFF939SUR.bigWig released s3://encode-public/2016/10/21/ca8c202a-a603-48b3-9d01-70e7551b7961/ENCFF939SUR.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF205VUD fastq fastq reads ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 2 2_1 36 single-ended 366356333 Kevin White, UChicago 8a106d7ad76fda5435d043a61f90e0d5 https://www.encodeproject.org/files/ENCFF205VUD/@@download/ENCFF205VUD.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/15/e690e6fd-48cb-481c-9e86-b4ecc75dac1c/ENCFF205VUD.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF536PXJ fastq fastq reads ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 3 3_1 36 single-ended 525482890 Kevin White, UChicago e0daf97c564ac74632855ccbd96ae230 https://www.encodeproject.org/files/ENCFF536PXJ/@@download/ENCFF536PXJ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/15/7f9a80cf-c888-44aa-b32b-db7a19c2eb50/ENCFF536PXJ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF868CXX fastq fastq reads ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 130117809 Kevin White, UChicago 541d15d42e281ed1d5162a52e647254e https://www.encodeproject.org/files/ENCFF868CXX/@@download/ENCFF868CXX.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/15/6ee38d1b-728a-4216-beb1-7a5c9c3d4a62/ENCFF868CXX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF601YEV bam bam alignments dm3 ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 36 /files/ENCFF059UHX/, /files/ENCFF868CXX/, /files/ENCFF536PXJ/, /files/ENCFF205VUD/ 1259044077 Kevin White, UChicago 6f97df5ed967405fea6287b0571a29e1 https://www.encodeproject.org/files/ENCFF601YEV/@@download/ENCFF601YEV.bam released s3://encode-public/2017/06/18/b8d8400c-2854-4990-b6ac-964d4e241f7f/ENCFF601YEV.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF203WMX bam bam alignments dm6 ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 36 /files/ENCFF479RCH/, /files/ENCFF868CXX/, /files/ENCFF536PXJ/, /files/ENCFF205VUD/ 1253582095 Kevin White, UChicago adc6c170c09061902caaa2169857cd4d https://www.encodeproject.org/files/ENCFF203WMX/@@download/ENCFF203WMX.bam released s3://encode-public/2017/06/28/b1d9478d-5389-4236-ac91-099ebd73865e/ENCFF203WMX.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF877FIA bigWig bigWig signal of unique reads dm3 ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF601YEV/ 15353786 Kevin White, UChicago 05dc402ffd52e3a60bb5bd408ecfb665 https://www.encodeproject.org/files/ENCFF877FIA/@@download/ENCFF877FIA.bigWig released s3://encode-public/2017/06/29/edfdbdd6-3c02-4902-8669-a8439da49fd8/ENCFF877FIA.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF175JRI bigWig bigWig read-depth normalized signal dm3 ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF601YEV/ 15353972 Kevin White, UChicago ced04326c20034bbcafa399020c11d60 https://www.encodeproject.org/files/ENCFF175JRI/@@download/ENCFF175JRI.bigWig released s3://encode-public/2017/06/29/f3e55a32-b9c4-4f8d-af4a-34d9adfd33e3/ENCFF175JRI.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF810VDM bigWig bigWig read-depth normalized signal dm6 ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF203WMX/ 17501153 Kevin White, UChicago 8773bbc64e47c84f7ad6daee015ddfdb https://www.encodeproject.org/files/ENCFF810VDM/@@download/ENCFF810VDM.bigWig released s3://encode-public/2017/06/30/f3b96710-20c1-499a-a6ec-e957126665d2/ENCFF810VDM.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF419QMB bigWig bigWig signal of unique reads dm6 ENCSR716CDW Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF203WMX/ 17500932 Kevin White, UChicago 1118fb3d1307b3ebcf6541d4fa991f17 https://www.encodeproject.org/files/ENCFF419QMB/@@download/ENCFF419QMB.bigWig released s3://encode-public/2017/06/30/c62b25f2-ebce-492b-97d4-ff9c580f7491/ENCFF419QMB.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF772GTI fastq fastq reads ENCSR012LAX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2021-04-06 ENCODE 1 1_1 150 paired-ended 2 /files/ENCFF295DZT/ 3179781879 Yijun Ruan, JAX e16529edb4494d2966bbf4a7ff2df4f2 SRA:SRR14838079 https://www.encodeproject.org/files/ENCFF772GTI/@@download/ENCFF772GTI.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/03/29/4327a3a5-9816-4002-8de5-5ec9c635aec4/ENCFF772GTI.fastq.gz ENCFF220UXU bam bam alignments GRCh38 ENCSR012LAX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2021-04-06 ENCODE 1 1_1 151 /files/ENCFF906FLV/, /files/ENCFF295DZT/, /files/ENCFF772GTI/ 4890070087 Yijun Ruan, JAX 32586c9928001384c3186baf0013303a https://www.encodeproject.org/files/ENCFF220UXU/@@download/ENCFF220UXU.bam released s3://encode-public/2021/03/29/99c5bd50-d8e0-4135-bb2d-75078720a76d/ENCFF220UXU.bam Lab custom GRCh38 released ENCFF295DZT fastq fastq reads ENCSR012LAX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2021-04-06 ENCODE 1 1_1 150 paired-ended 1 /files/ENCFF772GTI/ 3083313901 Yijun Ruan, JAX e6144af045e82661fa0d1b9cce48c031 SRA:SRR14838079 https://www.encodeproject.org/files/ENCFF295DZT/@@download/ENCFF295DZT.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/03/29/589e0463-dfd8-4337-9cf0-fc1a9f35322e/ENCFF295DZT.fastq.gz ENCFF647HIU fastq fastq reads ENCSR437TND Control ChIP-seq /fly-donors/ENCDO942RNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43867/'], '@type': ['Target', 'Item'], 'name': 'Atf3-dmelanogaster', 'label': 'Atf3', '@id': '/targets/Atf3-dmelanogaster/', 'title': 'Atf3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '40bf97a3-5ea1-4e44-8a3e-cfc754e8435a', 'status': 'released'} dm3 X 1106297 1192831 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 773325063 Kevin White, UChicago 876975193a989eb72c05c029a63429dc https://www.encodeproject.org/files/ENCFF647HIU/@@download/ENCFF647HIU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/3c779c5c-4428-43b0-99e6-41fa2c83ee43/ENCFF647HIU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF009ICI bam bam alignments dm3 ENCSR437TND Control ChIP-seq /fly-donors/ENCDO942RNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43867/'], '@type': ['Target', 'Item'], 'name': 'Atf3-dmelanogaster', 'label': 'Atf3', '@id': '/targets/Atf3-dmelanogaster/', 'title': 'Atf3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '40bf97a3-5ea1-4e44-8a3e-cfc754e8435a', 'status': 'released'} dm3 X 1106297 1192831 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF059UHX/, /files/ENCFF647HIU/ 1119906223 Kevin White, UChicago 71d11836776d4997602f41664f8b218f https://www.encodeproject.org/files/ENCFF009ICI/@@download/ENCFF009ICI.bam released s3://encode-public/2015/08/03/e963c904-dea1-4d39-9d28-35e8a71d7fda/ENCFF009ICI.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF163BYR bigWig bigWig read-depth normalized signal dm3 ENCSR437TND Control ChIP-seq /fly-donors/ENCDO942RNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43867/'], '@type': ['Target', 'Item'], 'name': 'Atf3-dmelanogaster', 'label': 'Atf3', '@id': '/targets/Atf3-dmelanogaster/', 'title': 'Atf3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '40bf97a3-5ea1-4e44-8a3e-cfc754e8435a', 'status': 'released'} dm3 X 1106297 1192831 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF009ICI/ 15400343 Kevin White, UChicago 42f98d6efde6bbd06e733dfef46656b2 https://www.encodeproject.org/files/ENCFF163BYR/@@download/ENCFF163BYR.bigWig released s3://encode-public/2015/10/05/91011522-86c4-41ab-81ea-d77a26ac2ca8/ENCFF163BYR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF635LPJ bigWig bigWig signal of unique reads dm3 ENCSR437TND Control ChIP-seq /fly-donors/ENCDO942RNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43867/'], '@type': ['Target', 'Item'], 'name': 'Atf3-dmelanogaster', 'label': 'Atf3', '@id': '/targets/Atf3-dmelanogaster/', 'title': 'Atf3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '40bf97a3-5ea1-4e44-8a3e-cfc754e8435a', 'status': 'released'} dm3 X 1106297 1192831 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF009ICI/ 15396394 Kevin White, UChicago 5e201d88f3b009336f668ee92aae831b https://www.encodeproject.org/files/ENCFF635LPJ/@@download/ENCFF635LPJ.bigWig released s3://encode-public/2015/10/05/cf45c1e2-7318-4b41-948c-4555b6908f2a/ENCFF635LPJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF991WYH bam bam alignments dm6 ENCSR437TND Control ChIP-seq /fly-donors/ENCDO942RNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43867/'], '@type': ['Target', 'Item'], 'name': 'Atf3-dmelanogaster', 'label': 'Atf3', '@id': '/targets/Atf3-dmelanogaster/', 'title': 'Atf3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '40bf97a3-5ea1-4e44-8a3e-cfc754e8435a', 'status': 'released'} dm3 X 1106297 1192831 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF479RCH/, /files/ENCFF647HIU/ 1114378524 Kevin White, UChicago 7d7f5a9bafeb4c0871a958bca4abdbb4 https://www.encodeproject.org/files/ENCFF991WYH/@@download/ENCFF991WYH.bam released s3://encode-public/2016/04/20/0a3de9e3-de0a-419e-9808-84805c136af7/ENCFF991WYH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF879FTS bigWig bigWig read-depth normalized signal dm6 ENCSR437TND Control ChIP-seq /fly-donors/ENCDO942RNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43867/'], '@type': ['Target', 'Item'], 'name': 'Atf3-dmelanogaster', 'label': 'Atf3', '@id': '/targets/Atf3-dmelanogaster/', 'title': 'Atf3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '40bf97a3-5ea1-4e44-8a3e-cfc754e8435a', 'status': 'released'} dm3 X 1106297 1192831 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF991WYH/ 17447639 Kevin White, UChicago bbf24dc4fd02e1091bcf97d1a614356b https://www.encodeproject.org/files/ENCFF879FTS/@@download/ENCFF879FTS.bigWig released s3://encode-public/2016/06/20/eea5410e-51f6-48cb-baa4-f185f62daaa5/ENCFF879FTS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF944TFK bigWig bigWig signal of unique reads dm6 ENCSR437TND Control ChIP-seq /fly-donors/ENCDO942RNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43867/'], '@type': ['Target', 'Item'], 'name': 'Atf3-dmelanogaster', 'label': 'Atf3', '@id': '/targets/Atf3-dmelanogaster/', 'title': 'Atf3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '40bf97a3-5ea1-4e44-8a3e-cfc754e8435a', 'status': 'released'} dm3 X 1106297 1192831 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF991WYH/ 17453752 Kevin White, UChicago f8d3ec20eed4eecdb292c7785415ffef https://www.encodeproject.org/files/ENCFF944TFK/@@download/ENCFF944TFK.bigWig released s3://encode-public/2016/06/20/092e82a9-a33e-4e77-8fe8-60af88e8a9b8/ENCFF944TFK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF369MSD fastq fastq reads ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 123720449 Michael Snyder, Stanford 846bcd1ff1b79c0b40e9eed1cfef3721 https://www.encodeproject.org/files/ENCFF369MSD/@@download/ENCFF369MSD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d73922c2-4d88-4a4c-b7fc-258763a0b33a/ENCFF369MSD.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF260NYX fastq fastq reads ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 103698811 Michael Snyder, Stanford ca75dec7448165cf10bae4aa5e6dc2f5 https://www.encodeproject.org/files/ENCFF260NYX/@@download/ENCFF260NYX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/758bc252-06ad-4743-99f4-4f88da71c684/ENCFF260NYX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF165XLW bam bam alignments ce10 ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF369MSD/, /files/ENCFF260NYX/, /files/ENCFF987UMF/ 247679846 Kevin White, UChicago 34bc3856db578dfcd61c96c7ccce4aea https://www.encodeproject.org/files/ENCFF165XLW/@@download/ENCFF165XLW.bam released s3://encode-public/2016/10/18/dfce868f-a146-4d48-b74e-2ed10731ed85/ENCFF165XLW.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF698OHG bam bam alignments ce11 ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF369MSD/, /files/ENCFF260NYX/, /files/ENCFF586MOL/ 247896320 Kevin White, UChicago 1759552f4373f5660cb388c49e1bd4bf https://www.encodeproject.org/files/ENCFF698OHG/@@download/ENCFF698OHG.bam released s3://encode-public/2016/10/18/180f053b-bb4c-41cb-8060-6ac5f458a457/ENCFF698OHG.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF148AAR bigWig bigWig read-depth normalized signal ce10 ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF165XLW/ 10039107 Kevin White, UChicago 1f6b718d1f01f6d710d85cc94509d597 https://www.encodeproject.org/files/ENCFF148AAR/@@download/ENCFF148AAR.bigWig released s3://encode-public/2016/10/20/712e3e2e-a810-456f-b55b-f6329965890f/ENCFF148AAR.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF017PTX bigWig bigWig signal of unique reads ce10 ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF165XLW/ 9999325 Kevin White, UChicago db11aa44f6079610873e3ae66c35e72e https://www.encodeproject.org/files/ENCFF017PTX/@@download/ENCFF017PTX.bigWig released s3://encode-public/2016/10/20/e9910d9d-4c6c-4479-9b85-ff16e9eccd1d/ENCFF017PTX.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF607UYR bigWig bigWig read-depth normalized signal ce11 ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF698OHG/ 10036480 Kevin White, UChicago 6157456cb36dc9b00530370c478b5493 https://www.encodeproject.org/files/ENCFF607UYR/@@download/ENCFF607UYR.bigWig released s3://encode-public/2016/10/20/f041809c-7b9c-45cc-bc77-672d72aa799c/ENCFF607UYR.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF694HYB bigWig bigWig signal of unique reads ce11 ENCSR041UOO Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF698OHG/ 9998450 Kevin White, UChicago 01e5ae492ba97c3b1c0ae4e0a459beb3 https://www.encodeproject.org/files/ENCFF694HYB/@@download/ENCFF694HYB.bigWig released s3://encode-public/2016/10/20/d1235c78-ece7-4071-ae37-8e7e5dc70c60/ENCFF694HYB.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF299YWE bam bam unfiltered alignments hg19 ENCSR943AOR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:USF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7392/'], '@type': ['Target', 'Item'], 'label': 'USF2', 'title': 'USF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '32ba2628-c5b4-40c4-bad6-f299d4eb068d', 'schema_version': '14', 'name': 'USF2-human', '@id': '/targets/USF2-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF532RGH/, /files/ENCFF807MUK/ 793714283 ENCODE Processing Pipeline 30cc5d8acfc7ac96a1dc799ed25cff6d https://www.encodeproject.org/files/ENCFF299YWE/@@download/ENCFF299YWE.bam released s3://encode-public/2018/02/22/d156b8d5-a3ed-4b76-ab81-f2e2dffd8a5b/ENCFF299YWE.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF532RGH fastq fastq reads ENCSR943AOR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:USF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7392/'], '@type': ['Target', 'Item'], 'label': 'USF2', 'title': 'USF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '32ba2628-c5b4-40c4-bad6-f299d4eb068d', 'schema_version': '14', 'name': 'USF2-human', '@id': '/targets/USF2-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 736442505 Kevin White, UChicago a9df9f18b57c1253364e2956f5eafc6b SRA:SRR6214042 https://www.encodeproject.org/files/ENCFF532RGH/@@download/ENCFF532RGH.fastq.gz Illumina HiSeq 2000 /files/ENCFF890NEW/ released s3://encode-public/2016/04/04/6414eda3-6d9f-47df-b1ca-634fc060237d/ENCFF532RGH.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF773XAD bam bam alignments hg19 ENCSR943AOR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:USF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7392/'], '@type': ['Target', 'Item'], 'label': 'USF2', 'title': 'USF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '32ba2628-c5b4-40c4-bad6-f299d4eb068d', 'schema_version': '14', 'name': 'USF2-human', '@id': '/targets/USF2-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF532RGH/, /files/ENCFF807MUK/ 604549937 ENCODE Processing Pipeline 401e3c2908eefbe9e58d09d22c82fbac https://www.encodeproject.org/files/ENCFF773XAD/@@download/ENCFF773XAD.bam released s3://encode-public/2016/04/23/6331be1f-0e4b-4db6-850c-1cef6f513ad0/ENCFF773XAD.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF964VYJ bam bam unfiltered alignments GRCh38 ENCSR943AOR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:USF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7392/'], '@type': ['Target', 'Item'], 'label': 'USF2', 'title': 'USF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '32ba2628-c5b4-40c4-bad6-f299d4eb068d', 'schema_version': '14', 'name': 'USF2-human', '@id': '/targets/USF2-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF532RGH/, /files/ENCFF643CGH/ 796514929 ENCODE Processing Pipeline 34c84b8084709eca8ad487a7938a8710 https://www.encodeproject.org/files/ENCFF964VYJ/@@download/ENCFF964VYJ.bam released s3://encode-public/2016/05/06/73153a9d-4848-459f-b622-2dea179e2844/ENCFF964VYJ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF465FJI bam bam alignments GRCh38 ENCSR943AOR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:USF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7392/'], '@type': ['Target', 'Item'], 'label': 'USF2', 'title': 'USF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '32ba2628-c5b4-40c4-bad6-f299d4eb068d', 'schema_version': '14', 'name': 'USF2-human', '@id': '/targets/USF2-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF532RGH/, /files/ENCFF643CGH/ 604218772 ENCODE Processing Pipeline b9afeb6cdee9b99eb36cb50faa0a629a https://www.encodeproject.org/files/ENCFF465FJI/@@download/ENCFF465FJI.bam released s3://encode-public/2016/05/06/2be959fe-054b-40c2-a4e5-78e4c791090d/ENCFF465FJI.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF056ORX bam bam alignments GRCh38 ENCSR943AOR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:USF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7392/'], '@type': ['Target', 'Item'], 'label': 'USF2', 'title': 'USF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '32ba2628-c5b4-40c4-bad6-f299d4eb068d', 'schema_version': '14', 'name': 'USF2-human', '@id': '/targets/USF2-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF532RGH/ 641916411 ENCODE Processing Pipeline a92563a52adb64b4254576ce0cf3dd4d https://www.encodeproject.org/files/ENCFF056ORX/@@download/ENCFF056ORX.bam released s3://encode-public/2020/10/27/e6f374a5-a0ea-44c8-9f94-b0eb461b1412/ENCFF056ORX.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF717ANW bam bam unfiltered alignments GRCh38 ENCSR943AOR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:USF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7392/'], '@type': ['Target', 'Item'], 'label': 'USF2', 'title': 'USF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '32ba2628-c5b4-40c4-bad6-f299d4eb068d', 'schema_version': '14', 'name': 'USF2-human', '@id': '/targets/USF2-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF532RGH/ 794815550 ENCODE Processing Pipeline e287b654c057363388fdc22ccf2073d3 https://www.encodeproject.org/files/ENCFF717ANW/@@download/ENCFF717ANW.bam released s3://encode-public/2020/10/27/3feaf530-c64b-4111-930e-7f8a611a1724/ENCFF717ANW.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF694ZRM bam bam unfiltered alignments hg19 ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF455LJL/, /files/ENCFF446PVB/ 2017902054 ENCODE Processing Pipeline 3fdb467b5cd6fef559bffa927c0d8222 https://www.encodeproject.org/files/ENCFF694ZRM/@@download/ENCFF694ZRM.bam released s3://encode-public/2018/02/22/eee685e5-7773-4f61-9e12-6bca11e6ce56/ENCFF694ZRM.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF455LJL fastq fastq reads ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 44212485 Kevin White, UChicago 513f9c7d696eca98b02567ed6ed60b10 SRA:SRR6212643 https://www.encodeproject.org/files/ENCFF455LJL/@@download/ENCFF455LJL.fastq.gz Illumina HiSeq 2500 /files/ENCFF422UWG/ released s3://encode-public/2016/03/14/25cc5ce8-10b6-4a92-9b79-bbaa2dbded5c/ENCFF455LJL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF446PVB fastq fastq reads ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1868958494 Kevin White, UChicago 1ce25be06b93a033ae9c9db2480be724 SRA:SRR6212644 https://www.encodeproject.org/files/ENCFF446PVB/@@download/ENCFF446PVB.fastq.gz Illumina HiSeq 2500 /files/ENCFF422UWG/ released s3://encode-public/2016/03/26/301a8aed-233e-47f3-beaf-d114de229b49/ENCFF446PVB.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF449ZQF bam bam alignments hg19 ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF455LJL/, /files/ENCFF446PVB/ 1531117442 ENCODE Processing Pipeline 49a4264e0087c5e29fda95e646e7def4 https://www.encodeproject.org/files/ENCFF449ZQF/@@download/ENCFF449ZQF.bam released s3://encode-public/2016/04/23/7955ab23-4555-42b9-a74c-2b5d223aec83/ENCFF449ZQF.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF813AFS bam bam unfiltered alignments GRCh38 ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF455LJL/, /files/ENCFF446PVB/ 2025733226 ENCODE Processing Pipeline 215db9984f31f03cda9d8fb6e7cfd003 https://www.encodeproject.org/files/ENCFF813AFS/@@download/ENCFF813AFS.bam released s3://encode-public/2016/05/06/11d970b8-287a-4c62-b9bf-91e799a2d1e3/ENCFF813AFS.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF036ZLP bam bam alignments GRCh38 ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF455LJL/, /files/ENCFF446PVB/ 1530566813 ENCODE Processing Pipeline d79a824777dbcd05e689d43325e60f10 https://www.encodeproject.org/files/ENCFF036ZLP/@@download/ENCFF036ZLP.bam released s3://encode-public/2016/05/06/d0bc595e-811c-4870-9047-2b746fdfc6d4/ENCFF036ZLP.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF083BFH bam bam unfiltered alignments GRCh38 ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF446PVB/, /files/ENCFF110MCL/, /files/ENCFF455LJL/ 2028958578 ENCODE Processing Pipeline 9321b019f965d1fed1290eb41d4bf38b https://www.encodeproject.org/files/ENCFF083BFH/@@download/ENCFF083BFH.bam released s3://encode-public/2020/10/27/4d65d123-1cd7-4eb2-b089-5a7433bdb77e/ENCFF083BFH.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF674PDO bam bam alignments GRCh38 ENCSR039ZBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8061/'], '@type': ['Target', 'Item'], 'label': 'FOSL1', 'title': 'FOSL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '53ca9569-e107-463b-857a-7a20592b6818', 'schema_version': '14', 'name': 'FOSL1-human', '@id': '/targets/FOSL1-human/', 'status': 'released'} hg19 11 65629201 65871508 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF446PVB/, /files/ENCFF110MCL/, /files/ENCFF455LJL/ 1613114814 ENCODE Processing Pipeline 28fe83fbbe679017ad00bccf0bb9ec34 https://www.encodeproject.org/files/ENCFF674PDO/@@download/ENCFF674PDO.bam released s3://encode-public/2020/10/27/aa71ab23-0898-47b2-a770-edc38e415c0a/ENCFF674PDO.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF003DZR fastq fastq reads ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 230971176 Michael Snyder, Stanford a96e4fb525d75bd84596c54308116d15 https://www.encodeproject.org/files/ENCFF003DZR/@@download/ENCFF003DZR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f7cdeffb-ef15-42cf-800b-18e66f90fd6e/ENCFF003DZR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF738QFX fastq fastq reads ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 246036033 Michael Snyder, Stanford 5bbfbb692a4d452192d4f224a3934a7a https://www.encodeproject.org/files/ENCFF738QFX/@@download/ENCFF738QFX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/514bd4c4-6e26-4ab2-b6fa-2ffe7d51b9bd/ENCFF738QFX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF201PGO bam bam alignments ce10 ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF003DZR/, /files/ENCFF738QFX/, /files/ENCFF987UMF/ 626405396 Kevin White, UChicago 5f91b5cd8370f825b9fe1ab7fd41091f https://www.encodeproject.org/files/ENCFF201PGO/@@download/ENCFF201PGO.bam released s3://encode-public/2016/10/18/83f62552-9457-4838-b6cf-03e746846c49/ENCFF201PGO.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF373ZZU bam bam alignments ce11 ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF003DZR/, /files/ENCFF738QFX/, /files/ENCFF586MOL/ 627080023 Kevin White, UChicago ccd1b2cf7f7c4e4a15e65373271472a9 https://www.encodeproject.org/files/ENCFF373ZZU/@@download/ENCFF373ZZU.bam released s3://encode-public/2016/10/19/8f372314-527d-4b58-8fa2-0d49d6f062aa/ENCFF373ZZU.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF925LNM bigWig bigWig read-depth normalized signal ce10 ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF201PGO/ 10018779 Kevin White, UChicago 7143ed9a70fc9791c0cc704f107160b3 https://www.encodeproject.org/files/ENCFF925LNM/@@download/ENCFF925LNM.bigWig released s3://encode-public/2016/10/20/72574ab1-772e-4b1e-b478-e7770a3d0a93/ENCFF925LNM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF588AIR bigWig bigWig signal of unique reads ce10 ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF201PGO/ 9994508 Kevin White, UChicago 03bc7f13aa51be7116e975593936bbe2 https://www.encodeproject.org/files/ENCFF588AIR/@@download/ENCFF588AIR.bigWig released s3://encode-public/2016/10/20/62419147-50cb-487e-ba82-951e1b52eddb/ENCFF588AIR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF970AUX bigWig bigWig signal of unique reads ce11 ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF373ZZU/ 9991321 Kevin White, UChicago 766fc2ab33b73464f9558c05190feee8 https://www.encodeproject.org/files/ENCFF970AUX/@@download/ENCFF970AUX.bigWig released s3://encode-public/2016/10/21/161b5711-8a8c-4397-aa59-532b0747c89c/ENCFF970AUX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF067BLA bigWig bigWig read-depth normalized signal ce11 ENCSR301AAS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF373ZZU/ 10016409 Kevin White, UChicago 3983faa4571c0cd91b45a15816b46429 https://www.encodeproject.org/files/ENCFF067BLA/@@download/ENCFF067BLA.bigWig released s3://encode-public/2016/10/21/e969de96-1e6f-4bda-8fa2-1ac656d1b6e7/ENCFF067BLA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF472KMS fastq fastq reads ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 447134581 Tim Reddy, Duke 64a431ab3eabe816b57e2bed1f4237a0 SRA:SRR5093084 https://www.encodeproject.org/files/ENCFF472KMS/@@download/ENCFF472KMS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/73266a9d-001b-4914-bc18-881937c5fa82/ENCFF472KMS.fastq.gz ENCFF991CBW fastq fastq reads ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 634568720 Tim Reddy, Duke d4c49b393bdea7cbbfe5a147bc278849 SRA:SRR5093082 https://www.encodeproject.org/files/ENCFF991CBW/@@download/ENCFF991CBW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/e95c7826-f72f-4053-9e58-816e8f2ec354/ENCFF991CBW.fastq.gz ENCFF583DKO fastq fastq reads ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 904176686 Tim Reddy, Duke 7336292d116ddcb1ca61280c24e8d61a SRA:SRR5093083 https://www.encodeproject.org/files/ENCFF583DKO/@@download/ENCFF583DKO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/a84a7586-06ca-4207-8914-d3a650088406/ENCFF583DKO.fastq.gz ENCFF455UAB bam bam alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF583DKO/ 994120858 Tim Reddy, Duke 257cc001808fc5343d06f667a5139d02 https://www.encodeproject.org/files/ENCFF455UAB/@@download/ENCFF455UAB.bam released s3://encode-public/2016/10/19/c2ffa410-c859-46a9-8d49-d81f834a4155/ENCFF455UAB.bam Lab custom GRCh38 archived ENCFF887YTT bam bam alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF991CBW/ 707848393 Tim Reddy, Duke b3b84cd2644adbcab98f04b279abbfa5 https://www.encodeproject.org/files/ENCFF887YTT/@@download/ENCFF887YTT.bam released s3://encode-public/2016/10/19/90aa6c11-7c98-4e34-9023-f24e8b170d44/ENCFF887YTT.bam Lab custom GRCh38 archived ENCFF081TBO bam bam alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF472KMS/ 498849145 Tim Reddy, Duke 2138e60238ad0892de324681d4999f89 https://www.encodeproject.org/files/ENCFF081TBO/@@download/ENCFF081TBO.bam released s3://encode-public/2016/10/19/311c46d1-5246-4e24-9b4a-0b75a9f41b93/ENCFF081TBO.bam Lab custom GRCh38 archived ENCFF567JAO bam bam unfiltered alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF991CBW/ 865865732 ENCODE Processing Pipeline bfdc10f2a534def1e469d04b3b62b1eb https://www.encodeproject.org/files/ENCFF567JAO/@@download/ENCFF567JAO.bam released s3://encode-public/2020/11/13/e89596fb-b9c3-4768-bc61-8d70019e2678/ENCFF567JAO.bam ENCODE4 v1.6.1 GRCh38 released ENCFF997YNE bam bam unfiltered alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF583DKO/, /files/ENCFF110MCL/ 1221341311 ENCODE Processing Pipeline 28759d9c13869f4443dbdea63e56d1b9 https://www.encodeproject.org/files/ENCFF997YNE/@@download/ENCFF997YNE.bam released s3://encode-public/2020/11/13/b744a0b5-4357-466f-9629-45ac90e95673/ENCFF997YNE.bam ENCODE4 v1.6.1 GRCh38 released ENCFF376THX bam bam unfiltered alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF472KMS/, /files/ENCFF110MCL/ 624546142 ENCODE Processing Pipeline a5aafe0bbc740cb9d8da8065ad2a6f8d https://www.encodeproject.org/files/ENCFF376THX/@@download/ENCFF376THX.bam released s3://encode-public/2020/11/13/129fa2e0-777e-48db-bb10-d7affcc44f4a/ENCFF376THX.bam ENCODE4 v1.6.1 GRCh38 released ENCFF866GIG bam bam alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF583DKO/, /files/ENCFF110MCL/ 1037906923 ENCODE Processing Pipeline 6176dc3e276c0a8a08a482d3d6aa5111 https://www.encodeproject.org/files/ENCFF866GIG/@@download/ENCFF866GIG.bam released s3://encode-public/2020/11/13/e5cdb46b-df8e-4c50-8bd6-c76c12452d0c/ENCFF866GIG.bam ENCODE4 v1.6.1 GRCh38 released ENCFF532AHH bam bam alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF991CBW/ 738655043 ENCODE Processing Pipeline 6d78ac0f991df0258736aec3aacb5a8b https://www.encodeproject.org/files/ENCFF532AHH/@@download/ENCFF532AHH.bam released s3://encode-public/2020/11/13/c7d322e4-d727-4f7e-a274-6650b79c6d6e/ENCFF532AHH.bam ENCODE4 v1.6.1 GRCh38 released ENCFF286PRE bam bam alignments GRCh38 ENCSR690JTW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF472KMS/, /files/ENCFF110MCL/ 512820393 ENCODE Processing Pipeline 25cde8f6ecb862bd60bbd0595827ec00 https://www.encodeproject.org/files/ENCFF286PRE/@@download/ENCFF286PRE.bam released s3://encode-public/2020/11/13/2c65305c-0a4e-4443-b332-08a16ddefb96/ENCFF286PRE.bam ENCODE4 v1.6.1 GRCh38 released ENCFF947ZPI fastq fastq reads ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 227437295 Michael Snyder, Stanford 4ea83ceba3ad3125ff8db91066065bbf https://www.encodeproject.org/files/ENCFF947ZPI/@@download/ENCFF947ZPI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fb0438cd-551a-4bf2-9297-f95a97a89771/ENCFF947ZPI.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF682EEI fastq fastq reads ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 243966815 Michael Snyder, Stanford f083fe8b2ee6b1f05b57ca181e085af5 https://www.encodeproject.org/files/ENCFF682EEI/@@download/ENCFF682EEI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/de02cd60-8d53-45f4-8495-ffabf6be071e/ENCFF682EEI.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF053ZFY bam bam alignments ce10 ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF947ZPI/, /files/ENCFF682EEI/, /files/ENCFF987UMF/ 232601809 Kevin White, UChicago f3fbb1bd19c0060787c4077e4bffb227 https://www.encodeproject.org/files/ENCFF053ZFY/@@download/ENCFF053ZFY.bam released s3://encode-public/2016/10/18/e74aebf5-dc5b-48eb-afa4-7ac0eb3f6598/ENCFF053ZFY.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF787FYX bam bam alignments ce11 ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF947ZPI/, /files/ENCFF682EEI/, /files/ENCFF586MOL/ 232791344 Kevin White, UChicago 20bd9262f9001e92d80e868fb90439a3 https://www.encodeproject.org/files/ENCFF787FYX/@@download/ENCFF787FYX.bam released s3://encode-public/2016/10/19/c8e91b6d-975d-481e-8e00-efa313b73034/ENCFF787FYX.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF747NKY bigWig bigWig read-depth normalized signal ce10 ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF053ZFY/ 9967360 Kevin White, UChicago 08dcf439461daa8296672ed0fa0a632b https://www.encodeproject.org/files/ENCFF747NKY/@@download/ENCFF747NKY.bigWig released s3://encode-public/2016/10/20/63b6ec20-6038-4df9-91c0-8653d5f80979/ENCFF747NKY.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF978IQS bigWig bigWig signal of unique reads ce10 ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF053ZFY/ 10013599 Kevin White, UChicago 50eda0d36987087f0bd295bdca20e815 https://www.encodeproject.org/files/ENCFF978IQS/@@download/ENCFF978IQS.bigWig released s3://encode-public/2016/10/20/b0548823-d4cc-4409-a366-27b05da1e7b2/ENCFF978IQS.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF885XKA bigWig bigWig read-depth normalized signal ce11 ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF787FYX/ 9965059 Kevin White, UChicago ffffe30b4dc681d8ccc9fb84be9b5157 https://www.encodeproject.org/files/ENCFF885XKA/@@download/ENCFF885XKA.bigWig released s3://encode-public/2016/10/21/6b2b200b-3b1f-41a0-9d1f-9078022cbfec/ENCFF885XKA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF137EPJ bigWig bigWig signal of unique reads ce11 ENCSR606HQA Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF787FYX/ 10010059 Kevin White, UChicago 751e2dc660ae579cd3153f1d46ba65b1 https://www.encodeproject.org/files/ENCFF137EPJ/@@download/ENCFF137EPJ.bigWig released s3://encode-public/2016/10/21/47f94566-6a57-404e-9f8f-4586316c4f01/ENCFF137EPJ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF125IOH tagAlign tagAlign alignments hg19 ENCSR583DLA Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR1270650/ 245705283 Anshul Kundaje, Stanford 717d837d6e16b15bd74114494610c006 https://www.encodeproject.org/files/ENCFF125IOH/@@download/ENCFF125IOH.tagAlign.gz archived s3://encode-public/2016/03/30/3ac302a9-6efa-45ba-a91d-cba0cf956271/ENCFF125IOH.tagAlign.gz Lab custom hg19 archived low read length ENCFF512LHB bam bam redacted unfiltered alignments GRCh38 ENCSR583DLA Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF264CZE/ 421216729 ENCODE Processing Pipeline 43472234709aa6e9e6f4690104349908 https://www.encodeproject.org/files/ENCFF512LHB/@@download/ENCFF512LHB.bam released s3://encode-public/2017/10/16/fb979ed1-b643-447c-b035-940000fce6da/ENCFF512LHB.bam ENCODE3 GRCh38 archived low read length ENCFF955KJR bam bam redacted alignments GRCh38 ENCSR583DLA Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF264CZE/ 232862126 ENCODE Processing Pipeline fd1f52033ee03b83c0116713b529514e https://www.encodeproject.org/files/ENCFF955KJR/@@download/ENCFF955KJR.bam released s3://encode-public/2017/10/16/23fcae94-ca9c-45b0-b207-12794ca4b036/ENCFF955KJR.bam ENCODE3 GRCh38 archived low read length ENCFF709QNO bam bam redacted unfiltered alignments hg19 ENCSR583DLA Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF264CZE/ 277604469 ENCODE Processing Pipeline c19e6b575b0b1e7add56d58d213e1c5a https://www.encodeproject.org/files/ENCFF709QNO/@@download/ENCFF709QNO.bam released s3://encode-public/2018/01/20/33e96055-c08e-4641-8fd2-a961f23547b4/ENCFF709QNO.bam ENCODE3 hg19 archived low read length ENCFF406EIB bam bam redacted alignments hg19 ENCSR583DLA Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF264CZE/ 187967903 ENCODE Processing Pipeline 7f154aab86e4fc683d0d23517f13cd99 https://www.encodeproject.org/files/ENCFF406EIB/@@download/ENCFF406EIB.bam released s3://encode-public/2018/01/20/c824489c-8739-407e-b008-c43471ba3f15/ENCFF406EIB.bam ENCODE3 hg19 archived low read length ENCFF275GXW bam bam redacted alignments GRCh38 ENCSR583DLA Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF435HBN/, /files/ENCFF110MCL/ 1323048755 ENCODE Processing Pipeline 055187037d2dedf276c52a61769c31de https://www.encodeproject.org/files/ENCFF275GXW/@@download/ENCFF275GXW.bam released s3://encode-public/2021/01/28/6112493c-13b3-4b1e-840b-54647aa6c694/ENCFF275GXW.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF952ECK fastq fastq reads ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 211018525 Michael Snyder, Stanford 9ae8c92ccefabeb9b6359916b94e8926 https://www.encodeproject.org/files/ENCFF952ECK/@@download/ENCFF952ECK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ac1371e5-7aea-41a1-94d4-16a83da00444/ENCFF952ECK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF043HKX fastq fastq reads ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 178898523 Michael Snyder, Stanford 6390292460c43156bfaa7cb363844c21 https://www.encodeproject.org/files/ENCFF043HKX/@@download/ENCFF043HKX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/da870725-d540-44b8-acee-06ebbc8cae32/ENCFF043HKX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF794ASQ bam bam alignments ce10 ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF952ECK/, /files/ENCFF043HKX/, /files/ENCFF987UMF/ 486370841 Kevin White, UChicago 3482ec4800273f1889d1a218c1165af4 https://www.encodeproject.org/files/ENCFF794ASQ/@@download/ENCFF794ASQ.bam released s3://encode-public/2016/10/18/168e296e-7e76-48de-9e95-f48017b71663/ENCFF794ASQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF106PVE bam bam alignments ce11 ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF952ECK/, /files/ENCFF043HKX/, /files/ENCFF586MOL/ 486865908 Kevin White, UChicago 8e533b8898d01e10e1e28087556c21c0 https://www.encodeproject.org/files/ENCFF106PVE/@@download/ENCFF106PVE.bam released s3://encode-public/2016/10/18/4d9adc0c-35ef-4238-96a4-f76cfff04385/ENCFF106PVE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF596VKD bigWig bigWig signal of unique reads ce10 ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF794ASQ/ 10024371 Kevin White, UChicago b4f8ecf5edda4f5ee736f042e3963678 https://www.encodeproject.org/files/ENCFF596VKD/@@download/ENCFF596VKD.bigWig released s3://encode-public/2016/10/20/1c266a9b-2288-4665-93b8-e15e690a0e8c/ENCFF596VKD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF167HER bigWig bigWig read-depth normalized signal ce10 ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF794ASQ/ 10007664 Kevin White, UChicago 03b3ed9a96bc94f030cacdba75df3b82 https://www.encodeproject.org/files/ENCFF167HER/@@download/ENCFF167HER.bigWig released s3://encode-public/2016/10/20/7aebbbfc-aad1-48e0-843d-e27afe81db15/ENCFF167HER.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF483LVP bigWig bigWig signal of unique reads ce11 ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF106PVE/ 10023421 Kevin White, UChicago ff8c7d34744831dbe2988508b149eefe https://www.encodeproject.org/files/ENCFF483LVP/@@download/ENCFF483LVP.bigWig released s3://encode-public/2016/10/20/f70dc47d-011b-4a0f-804b-000c7ffa5a6f/ENCFF483LVP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF317IPA bigWig bigWig read-depth normalized signal ce11 ENCSR912HOD Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF106PVE/ 10004427 Kevin White, UChicago 0de080a76d7434c457a496be6c0b0f31 https://www.encodeproject.org/files/ENCFF317IPA/@@download/ENCFF317IPA.bigWig released s3://encode-public/2016/10/20/8b40091c-bf63-4e9a-bc26-ac59e8d86913/ENCFF317IPA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF281CRF fastq fastq reads ENCSR656YMX Control ChIP-seq /fly-donors/ENCDO697UAS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42390/'], '@type': ['Target', 'Item'], 'name': 'CG4424-dmelanogaster', 'label': 'CG4424', '@id': '/targets/CG4424-dmelanogaster/', 'title': 'CG4424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd8c06dcc-16e3-469a-8dde-4e43804ca995', 'status': 'released'} dm3 3R 20015215 20035187 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 625706992 Kevin White, UChicago 4d4637ab5cfae898273baad934949441 https://www.encodeproject.org/files/ENCFF281CRF/@@download/ENCFF281CRF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/10/7e42b4f5-7d62-4b3b-8966-1e4b772fdd78/ENCFF281CRF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF623UPG bam bam alignments dm3 ENCSR656YMX Control ChIP-seq /fly-donors/ENCDO697UAS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42390/'], '@type': ['Target', 'Item'], 'name': 'CG4424-dmelanogaster', 'label': 'CG4424', '@id': '/targets/CG4424-dmelanogaster/', 'title': 'CG4424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd8c06dcc-16e3-469a-8dde-4e43804ca995', 'status': 'released'} dm3 3R 20015215 20035187 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF059UHX/, /files/ENCFF281CRF/ 762895930 Kevin White, UChicago 994184f2cfb5cf0ea1cf3822f23a31e2 https://www.encodeproject.org/files/ENCFF623UPG/@@download/ENCFF623UPG.bam released s3://encode-public/2016/04/10/593d7af5-207e-4e03-a997-cbe28365ea83/ENCFF623UPG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF776QOL bigWig bigWig signal of unique reads dm3 ENCSR656YMX Control ChIP-seq /fly-donors/ENCDO697UAS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42390/'], '@type': ['Target', 'Item'], 'name': 'CG4424-dmelanogaster', 'label': 'CG4424', '@id': '/targets/CG4424-dmelanogaster/', 'title': 'CG4424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd8c06dcc-16e3-469a-8dde-4e43804ca995', 'status': 'released'} dm3 3R 20015215 20035187 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623UPG/ 15310259 Kevin White, UChicago b1dfb2cc0caebe9a4896a4214e1f94c8 https://www.encodeproject.org/files/ENCFF776QOL/@@download/ENCFF776QOL.bigWig released s3://encode-public/2016/04/11/99ecf004-f802-4dd1-a81f-d92157ad36b3/ENCFF776QOL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF881KOL bigWig bigWig read-depth normalized signal dm3 ENCSR656YMX Control ChIP-seq /fly-donors/ENCDO697UAS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42390/'], '@type': ['Target', 'Item'], 'name': 'CG4424-dmelanogaster', 'label': 'CG4424', '@id': '/targets/CG4424-dmelanogaster/', 'title': 'CG4424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd8c06dcc-16e3-469a-8dde-4e43804ca995', 'status': 'released'} dm3 3R 20015215 20035187 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623UPG/ 15355892 Kevin White, UChicago cbf3e3462396bdf8b41e500cb150b615 https://www.encodeproject.org/files/ENCFF881KOL/@@download/ENCFF881KOL.bigWig released s3://encode-public/2016/04/11/7e831e97-0a2f-4661-b9a9-c5447f488c24/ENCFF881KOL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF463TNP bam bam alignments dm6 ENCSR656YMX Control ChIP-seq /fly-donors/ENCDO697UAS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42390/'], '@type': ['Target', 'Item'], 'name': 'CG4424-dmelanogaster', 'label': 'CG4424', '@id': '/targets/CG4424-dmelanogaster/', 'title': 'CG4424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd8c06dcc-16e3-469a-8dde-4e43804ca995', 'status': 'released'} dm3 3R 20015215 20035187 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF479RCH/, /files/ENCFF281CRF/ 759280667 Kevin White, UChicago 9b71c487a49915ce534f382a209c7f5b https://www.encodeproject.org/files/ENCFF463TNP/@@download/ENCFF463TNP.bam released s3://encode-public/2016/04/21/85083d3d-17fb-4824-aa60-552ac338d275/ENCFF463TNP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF249GCQ bigWig bigWig signal of unique reads dm6 ENCSR656YMX Control ChIP-seq /fly-donors/ENCDO697UAS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42390/'], '@type': ['Target', 'Item'], 'name': 'CG4424-dmelanogaster', 'label': 'CG4424', '@id': '/targets/CG4424-dmelanogaster/', 'title': 'CG4424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd8c06dcc-16e3-469a-8dde-4e43804ca995', 'status': 'released'} dm3 3R 20015215 20035187 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF463TNP/ 17421810 Kevin White, UChicago e079ab38c6a0e0912f73c773a06259c0 https://www.encodeproject.org/files/ENCFF249GCQ/@@download/ENCFF249GCQ.bigWig released s3://encode-public/2016/06/21/b60d55d0-eac8-4544-939a-816be986b302/ENCFF249GCQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF865ATU bigWig bigWig read-depth normalized signal dm6 ENCSR656YMX Control ChIP-seq /fly-donors/ENCDO697UAS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42390/'], '@type': ['Target', 'Item'], 'name': 'CG4424-dmelanogaster', 'label': 'CG4424', '@id': '/targets/CG4424-dmelanogaster/', 'title': 'CG4424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd8c06dcc-16e3-469a-8dde-4e43804ca995', 'status': 'released'} dm3 3R 20015215 20035187 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF463TNP/ 17487316 Kevin White, UChicago c8bad860e637b084fef06a359e7251b7 https://www.encodeproject.org/files/ENCFF865ATU/@@download/ENCFF865ATU.bigWig released s3://encode-public/2016/06/21/57051837-4305-4029-8056-b5d22d3d7886/ENCFF865ATU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF974ZFY tagAlign tagAlign alignments hg19 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 /files/ENCFF582UFD/, /files/ENCFF043RFW/ 287246579 Anshul Kundaje, Stanford ec44ff2dd311f65daf53d208c2a09608 https://www.encodeproject.org/files/ENCFF974ZFY/@@download/ENCFF974ZFY.tagAlign.gz archived s3://encode-public/2016/03/30/4d2fd5ec-46ab-4261-bb71-aa6243d3bec6/ENCFF974ZFY.tagAlign.gz Lab custom hg19 archived ENCFF043RFW fastq fastq reads ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 1755195998 Zhiping Weng, UMass 5314f018c8f93580913df7f498ee9f8f SRA:SRR1045834 https://www.encodeproject.org/files/ENCFF043RFW/@@download/ENCFF043RFW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/6cbcad38-a290-4dd9-8ba5-0ccab1bd420c/ENCFF043RFW.fastq.gz ENCFF582UFD fastq fastq reads ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 50 single-ended 2759563918 Zhiping Weng, UMass c4d1b4fefef5106ae89fe6bd1d5a1861 SRA:SRR643656 https://www.encodeproject.org/files/ENCFF582UFD/@@download/ENCFF582UFD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/ca9b7bd1-ee7b-459b-a612-84e05bc71f5b/ENCFF582UFD.fastq.gz ENCFF318REI bam bam unfiltered alignments GRCh38 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF582UFD/, /files/ENCFF043RFW/, /files/ENCFF110MCL/ 5062107688 ENCODE Processing Pipeline 428cd49926e70c37b3e7362d3e8e6caf https://www.encodeproject.org/files/ENCFF318REI/@@download/ENCFF318REI.bam released s3://encode-public/2020/10/09/4c44fcf3-aee1-4132-9503-92f43577f088/ENCFF318REI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF287BIT bam bam alignments GRCh38 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF582UFD/, /files/ENCFF043RFW/, /files/ENCFF110MCL/ 3792707813 ENCODE Processing Pipeline 4329ca3ebcd357a0bfa39f61c2d7fbc0 https://www.encodeproject.org/files/ENCFF287BIT/@@download/ENCFF287BIT.bam released s3://encode-public/2020/10/09/ac7fe97f-c591-44ca-ad82-ac0367c874de/ENCFF287BIT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF747ZVF bam bam unfiltered alignments GRCh38 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF582UFD/, /files/ENCFF643CGH/, /files/ENCFF043RFW/ 4300305683 ENCODE Processing Pipeline 465a106305b5b15dd720d97a9b1889ae https://www.encodeproject.org/files/ENCFF747ZVF/@@download/ENCFF747ZVF.bam released s3://encode-public/2017/03/17/308e08b4-6fd8-48e6-9cf2-613d5780d210/ENCFF747ZVF.bam ENCODE3 GRCh38 archived ENCFF999JOG bam bam alignments GRCh38 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF582UFD/, /files/ENCFF643CGH/, /files/ENCFF043RFW/ 2730061260 ENCODE Processing Pipeline 2de1905de951f9de9ab0bf569a92b2b8 https://www.encodeproject.org/files/ENCFF999JOG/@@download/ENCFF999JOG.bam released s3://encode-public/2017/03/17/ef569855-7570-4b15-bb6a-1cb32a0b1f35/ENCFF999JOG.bam ENCODE3 GRCh38 archived ENCFF563UYZ bam bam unfiltered alignments hg19 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF582UFD/, /files/ENCFF807MUK/, /files/ENCFF043RFW/ 4275567792 ENCODE Processing Pipeline 8f7ec71e794dda07599d7323bfb756a0 https://www.encodeproject.org/files/ENCFF563UYZ/@@download/ENCFF563UYZ.bam released s3://encode-public/2017/03/17/2c1855ea-390d-4f5d-b38e-0b61b46c56dc/ENCFF563UYZ.bam ENCODE3 hg19 archived ENCFF191VBQ bam bam alignments hg19 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF582UFD/, /files/ENCFF807MUK/, /files/ENCFF043RFW/ 2730668009 ENCODE Processing Pipeline ffac4a20dd4fc66d6699e1180b2bbab2 https://www.encodeproject.org/files/ENCFF191VBQ/@@download/ENCFF191VBQ.bam released s3://encode-public/2017/03/17/322143e6-78d6-4d7c-9c71-b06dedea9398/ENCFF191VBQ.bam ENCODE3 hg19 archived ENCFF538QTJ bam bam unfiltered alignments GRCh38 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF043RFW/, /files/ENCFF582UFD/, /files/ENCFF110MCL/ 4185998970 ENCODE Processing Pipeline 46c0297f65cdfd4a5469f3a1b2e24ae8 https://www.encodeproject.org/files/ENCFF538QTJ/@@download/ENCFF538QTJ.bam released s3://encode-public/2020/12/10/6d7219a7-d9cf-4c8a-a0a5-783830e551f0/ENCFF538QTJ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF292HQN bam bam alignments GRCh38 ENCSR780UWK Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF043RFW/, /files/ENCFF582UFD/, /files/ENCFF110MCL/ 2994331493 ENCODE Processing Pipeline 2bd1b16f8e611cff043db7774481f98d https://www.encodeproject.org/files/ENCFF292HQN/@@download/ENCFF292HQN.bam released s3://encode-public/2020/12/10/1786c7c8-a688-40c8-90f0-81b5cd3bc733/ENCFF292HQN.bam ENCODE4 v1.6.1 GRCh38 released ENCFF074GGV fastq fastq reads ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 158560695 Michael Snyder, Stanford 9667aaaff7cbea9b5c23824d27379a73 https://www.encodeproject.org/files/ENCFF074GGV/@@download/ENCFF074GGV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f7e93882-c7f3-4dd9-82f2-70a3105f5f6c/ENCFF074GGV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF383PNT fastq fastq reads ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 253463056 Michael Snyder, Stanford 7d75eae8b0931e77fe901fb36f04dd17 https://www.encodeproject.org/files/ENCFF383PNT/@@download/ENCFF383PNT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/3e99ca29-e3cc-4c50-95a4-a8cf105a6f5d/ENCFF383PNT.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF533IIF bam bam alignments ce10 ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF074GGV/, /files/ENCFF383PNT/, /files/ENCFF987UMF/ 462144050 Kevin White, UChicago d8277af2d7eeada635c6cea6c3f625c7 https://www.encodeproject.org/files/ENCFF533IIF/@@download/ENCFF533IIF.bam released s3://encode-public/2016/10/18/bd45c4e2-ef2e-4197-9eb4-aaade4ffe1c6/ENCFF533IIF.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF598KYU bam bam alignments ce11 ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF074GGV/, /files/ENCFF383PNT/, /files/ENCFF586MOL/ 462553098 Kevin White, UChicago ce9f4e4ee010f57a972f2ff3e2006f2d https://www.encodeproject.org/files/ENCFF598KYU/@@download/ENCFF598KYU.bam released s3://encode-public/2016/10/18/78a11bed-40ac-4693-96b5-56f06197fa7f/ENCFF598KYU.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF591UZI bigWig bigWig read-depth normalized signal ce10 ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF533IIF/ 10047702 Kevin White, UChicago f91ed507b994f0417f28c5761b45670f https://www.encodeproject.org/files/ENCFF591UZI/@@download/ENCFF591UZI.bigWig released s3://encode-public/2016/10/20/6a0ed09a-f8a2-45d5-b620-136f0ee37d5f/ENCFF591UZI.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF674NTA bigWig bigWig signal of unique reads ce10 ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF533IIF/ 10037866 Kevin White, UChicago 54d738edf05f620a4dea52e0a42833bd https://www.encodeproject.org/files/ENCFF674NTA/@@download/ENCFF674NTA.bigWig released s3://encode-public/2016/10/20/d89b996f-e7ab-4878-bd66-ae7a72069287/ENCFF674NTA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF394XSV bigWig bigWig read-depth normalized signal ce11 ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF598KYU/ 10039156 Kevin White, UChicago 31421b6658f8592fa782f8cd4f42ecbb https://www.encodeproject.org/files/ENCFF394XSV/@@download/ENCFF394XSV.bigWig released s3://encode-public/2016/10/21/351762c8-d26f-4997-950a-fba3e93ab4ce/ENCFF394XSV.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF434VLZ bigWig bigWig signal of unique reads ce11 ENCSR145MWJ Control ChIP-seq /worm-donors/ENCDO748FFY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF598KYU/ 10032876 Kevin White, UChicago ec8d056ac6371c9f6d6e76fe0a3de2c3 https://www.encodeproject.org/files/ENCFF434VLZ/@@download/ENCFF434VLZ.bigWig released s3://encode-public/2016/10/21/33d31b27-00fd-413d-a0a4-adec5bf922e0/ENCFF434VLZ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF275MWU fastq fastq reads ENCSR815MOO Control ChIP-seq /worm-donors/ENCDO453HAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 27 single-ended 28464157 Michael Snyder, Stanford f5c2b608dccb1045c3ac3b3994c65d55 https://www.encodeproject.org/files/ENCFF275MWU/@@download/ENCFF275MWU.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/18/4e490066-a893-4d44-837b-22e6a29aba3a/ENCFF275MWU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF812KNJ fastq fastq reads ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 225383972 Michael Snyder, Stanford c3d109d22b49ecdcb1c3c1e318009a90 https://www.encodeproject.org/files/ENCFF812KNJ/@@download/ENCFF812KNJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cdbd1cbf-4fc0-4851-96ca-bc26874a4bcc/ENCFF812KNJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF676KNM fastq fastq reads ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 280907970 Michael Snyder, Stanford 26d83e87e65a07e16c6c0638f05d8cd9 https://www.encodeproject.org/files/ENCFF676KNM/@@download/ENCFF676KNM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/634a86ec-3920-4a85-914c-b3cf0b22f4ef/ENCFF676KNM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF431WXV bam bam alignments ce10 ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF676KNM/, /files/ENCFF812KNJ/, /files/ENCFF987UMF/ 533740620 Kevin White, UChicago cb4c06053908b2040667088665a428fd https://www.encodeproject.org/files/ENCFF431WXV/@@download/ENCFF431WXV.bam released s3://encode-public/2016/10/18/c3288abf-1485-482f-ac18-799cf11bd5c4/ENCFF431WXV.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF678DIL bam bam alignments ce11 ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF676KNM/, /files/ENCFF812KNJ/, /files/ENCFF586MOL/ 534132255 Kevin White, UChicago f4be11363184de3e323237243f09951b https://www.encodeproject.org/files/ENCFF678DIL/@@download/ENCFF678DIL.bam released s3://encode-public/2016/10/19/a9670293-7720-472c-a63d-b582fe83d56f/ENCFF678DIL.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF309OXM bigWig bigWig read-depth normalized signal ce10 ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF431WXV/ 9996757 Kevin White, UChicago 9daf704c286d574b805630b26bdd2c86 https://www.encodeproject.org/files/ENCFF309OXM/@@download/ENCFF309OXM.bigWig released s3://encode-public/2016/10/20/8af51cc2-757d-440e-91e7-608d7099cbe8/ENCFF309OXM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF120JUJ bigWig bigWig signal of unique reads ce10 ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF431WXV/ 9998560 Kevin White, UChicago 8bcc396ee9f872dc8c32868753e96909 https://www.encodeproject.org/files/ENCFF120JUJ/@@download/ENCFF120JUJ.bigWig released s3://encode-public/2016/10/20/0522cd58-0adc-4fba-b0e0-2190b3d4ae08/ENCFF120JUJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF799OLK bigWig bigWig read-depth normalized signal ce11 ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF678DIL/ 9988447 Kevin White, UChicago 97a765529cba7e697d849aab1d8d41de https://www.encodeproject.org/files/ENCFF799OLK/@@download/ENCFF799OLK.bigWig released s3://encode-public/2016/10/21/65252afb-3777-43cf-9c27-41e81997e272/ENCFF799OLK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF758HRM bigWig bigWig signal of unique reads ce11 ENCSR815AQR Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF678DIL/ 9994431 Kevin White, UChicago 6f10a6ebb8d6991c5d8a03475f4ee502 https://www.encodeproject.org/files/ENCFF758HRM/@@download/ENCFF758HRM.bigWig released s3://encode-public/2016/10/21/888f357c-328f-4237-8477-a3ef27ad97c0/ENCFF758HRM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF355APW fastq fastq reads ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1838551746 Bradley Bernstein, Broad 5392d5fefea14693d58af1d2a53f2db9 SRA:SRR8275111 https://www.encodeproject.org/files/ENCFF355APW/@@download/ENCFF355APW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/18809be9-e598-4d5a-b75c-2488c4215f78/ENCFF355APW.fastq.gz ENCFF093XYO fastq fastq reads ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1794865361 Bradley Bernstein, Broad 672e1a150c8e444a3b1df34399cb8d45 SRA:SRR8275112 https://www.encodeproject.org/files/ENCFF093XYO/@@download/ENCFF093XYO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/890357d2-389b-4548-94c6-6ddad0f104f6/ENCFF093XYO.fastq.gz ENCFF439OAX bam bam unfiltered alignments GRCh38 ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF355APW/, /files/ENCFF093XYO/, /files/ENCFF643CGH/ 3450122326 ENCODE Processing Pipeline c5cbce228bb69afb3a5260aafc39a146 https://www.encodeproject.org/files/ENCFF439OAX/@@download/ENCFF439OAX.bam released s3://encode-public/2016/10/27/26632a01-4b06-4e8d-bd75-692e072be466/ENCFF439OAX.bam ENCODE3 GRCh38 archived ENCFF898XPK bam bam unfiltered alignments hg19 ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF355APW/, /files/ENCFF093XYO/ 3440988352 ENCODE Processing Pipeline 2ca5646b000c71aa84a5ccc4ee4a1f08 https://www.encodeproject.org/files/ENCFF898XPK/@@download/ENCFF898XPK.bam released s3://encode-public/2016/10/27/13068e81-422a-41eb-b826-79faf82493ee/ENCFF898XPK.bam ENCODE3 hg19 archived ENCFF010MTI bam bam alignments GRCh38 ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF355APW/, /files/ENCFF093XYO/, /files/ENCFF643CGH/ 2887043168 ENCODE Processing Pipeline 3c082c15da2e9d0d092a05cb8f11ca47 https://www.encodeproject.org/files/ENCFF010MTI/@@download/ENCFF010MTI.bam released s3://encode-public/2016/10/27/5c673b7c-bf0b-420c-afa4-985ca8c21777/ENCFF010MTI.bam ENCODE3 GRCh38 archived ENCFF785FPY bam bam alignments hg19 ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF355APW/, /files/ENCFF093XYO/ 2883083312 ENCODE Processing Pipeline 58f27d82b8b4a649a50072df702e7096 https://www.encodeproject.org/files/ENCFF785FPY/@@download/ENCFF785FPY.bam released s3://encode-public/2016/10/27/ae800cba-0c3a-401d-b9a6-fd617a70cf70/ENCFF785FPY.bam ENCODE3 hg19 archived ENCFF972JEV bam bam unfiltered alignments GRCh38 ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF355APW/, /files/ENCFF110MCL/, /files/ENCFF093XYO/ 3488900562 ENCODE Processing Pipeline a596048da3daa24db250f631bd058df8 https://www.encodeproject.org/files/ENCFF972JEV/@@download/ENCFF972JEV.bam released s3://encode-public/2020/08/20/d2471e09-56f8-472e-a624-9719c1df0db9/ENCFF972JEV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF931UGQ bam bam alignments GRCh38 ENCSR509SEX Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF355APW/, /files/ENCFF110MCL/, /files/ENCFF093XYO/ 2951266542 ENCODE Processing Pipeline 74e23fb05a90e274a5e10993b372344f https://www.encodeproject.org/files/ENCFF931UGQ/@@download/ENCFF931UGQ.bam released s3://encode-public/2020/08/20/460e1963-0294-47ed-8713-b228e67858cb/ENCFF931UGQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF731CNO fastq fastq reads ENCSR080CLA Control ChIP-seq /fly-donors/ENCDO469IAA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37481/'], '@type': ['Target', 'Item'], 'name': 'HmgD-dmelanogaster', 'label': 'HmgD', '@id': '/targets/HmgD-dmelanogaster/', 'title': 'HmgD (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1c8875a2-a19d-48c2-b348-ae9897eca289', 'status': 'released'} dm3 2R 17593153 17615075 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 814526211 Kevin White, UChicago 3ddac5a5e543270a7bd5c1047583b83a https://www.encodeproject.org/files/ENCFF731CNO/@@download/ENCFF731CNO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/ed43db2b-a07a-4662-8ef5-885489edd9f4/ENCFF731CNO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF029GFM bam bam alignments dm3 ENCSR080CLA Control ChIP-seq /fly-donors/ENCDO469IAA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37481/'], '@type': ['Target', 'Item'], 'name': 'HmgD-dmelanogaster', 'label': 'HmgD', '@id': '/targets/HmgD-dmelanogaster/', 'title': 'HmgD (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1c8875a2-a19d-48c2-b348-ae9897eca289', 'status': 'released'} dm3 2R 17593153 17615075 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF731CNO/ 1173806670 Kevin White, UChicago 87cd8d367ed83bd21b5f1da047f6c475 https://www.encodeproject.org/files/ENCFF029GFM/@@download/ENCFF029GFM.bam released s3://encode-public/2015/08/03/9aa53762-fe84-46f8-9ff5-bee57427810c/ENCFF029GFM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF123FGK bigWig bigWig signal of unique reads dm3 ENCSR080CLA Control ChIP-seq /fly-donors/ENCDO469IAA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37481/'], '@type': ['Target', 'Item'], 'name': 'HmgD-dmelanogaster', 'label': 'HmgD', '@id': '/targets/HmgD-dmelanogaster/', 'title': 'HmgD (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1c8875a2-a19d-48c2-b348-ae9897eca289', 'status': 'released'} dm3 2R 17593153 17615075 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF029GFM/ 15424569 Kevin White, UChicago ab9d91db1a84d6b24264caf58fe0b776 https://www.encodeproject.org/files/ENCFF123FGK/@@download/ENCFF123FGK.bigWig released s3://encode-public/2015/10/06/34f78779-8a52-4d46-a033-c0de064760ea/ENCFF123FGK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF444VCO bigWig bigWig read-depth normalized signal dm3 ENCSR080CLA Control ChIP-seq /fly-donors/ENCDO469IAA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37481/'], '@type': ['Target', 'Item'], 'name': 'HmgD-dmelanogaster', 'label': 'HmgD', '@id': '/targets/HmgD-dmelanogaster/', 'title': 'HmgD (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1c8875a2-a19d-48c2-b348-ae9897eca289', 'status': 'released'} dm3 2R 17593153 17615075 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF029GFM/ 15422137 Kevin White, UChicago 78542c918216e1bd00c44250202802ea https://www.encodeproject.org/files/ENCFF444VCO/@@download/ENCFF444VCO.bigWig released s3://encode-public/2015/10/06/4b9b5408-1dc1-433e-ac87-8ea0ffe7a1bd/ENCFF444VCO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF034DCG bam bam alignments dm6 ENCSR080CLA Control ChIP-seq /fly-donors/ENCDO469IAA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37481/'], '@type': ['Target', 'Item'], 'name': 'HmgD-dmelanogaster', 'label': 'HmgD', '@id': '/targets/HmgD-dmelanogaster/', 'title': 'HmgD (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1c8875a2-a19d-48c2-b348-ae9897eca289', 'status': 'released'} dm3 2R 17593153 17615075 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF731CNO/ 1170928145 Kevin White, UChicago 30667ca8bcbc11fb0a2f62fcc4fa3ab8 https://www.encodeproject.org/files/ENCFF034DCG/@@download/ENCFF034DCG.bam released s3://encode-public/2016/04/21/1b65fb8d-0e58-474b-a506-734f1473b1a8/ENCFF034DCG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF798PXD bigWig bigWig read-depth normalized signal dm6 ENCSR080CLA Control ChIP-seq /fly-donors/ENCDO469IAA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37481/'], '@type': ['Target', 'Item'], 'name': 'HmgD-dmelanogaster', 'label': 'HmgD', '@id': '/targets/HmgD-dmelanogaster/', 'title': 'HmgD (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1c8875a2-a19d-48c2-b348-ae9897eca289', 'status': 'released'} dm3 2R 17593153 17615075 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF034DCG/ 17471181 Kevin White, UChicago e16940a1f92fc8f11b05a6935446d118 https://www.encodeproject.org/files/ENCFF798PXD/@@download/ENCFF798PXD.bigWig released s3://encode-public/2016/06/20/fb5811bd-575e-46c4-b0cd-510584664503/ENCFF798PXD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF962USP bigWig bigWig signal of unique reads dm6 ENCSR080CLA Control ChIP-seq /fly-donors/ENCDO469IAA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37481/'], '@type': ['Target', 'Item'], 'name': 'HmgD-dmelanogaster', 'label': 'HmgD', '@id': '/targets/HmgD-dmelanogaster/', 'title': 'HmgD (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1c8875a2-a19d-48c2-b348-ae9897eca289', 'status': 'released'} dm3 2R 17593153 17615075 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF034DCG/ 17480049 Kevin White, UChicago a1dbf67cae66860747bbc5d901b34846 https://www.encodeproject.org/files/ENCFF962USP/@@download/ENCFF962USP.bigWig released s3://encode-public/2016/06/20/59b5c49b-e7a1-4fe5-853d-3372dbb61c6b/ENCFF962USP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF143CGO fastq fastq reads ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 3 3_1 36 single-ended 387819994 Kevin White, UChicago 237d195262892da243a4cae9b129dffb https://www.encodeproject.org/files/ENCFF143CGO/@@download/ENCFF143CGO.fastq.gz Illumina Genome Analyzer /files/ENCFF868CXX/, /files/ENCFF205VUD/, /files/ENCFF536PXJ/ released s3://encode-public/2017/06/15/21049694-efa2-480b-b3eb-f71de5f551ee/ENCFF143CGO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF475RQS fastq fastq reads ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 610690702 Kevin White, UChicago 51db46a8c64c1847082f7571626b9a89 https://www.encodeproject.org/files/ENCFF475RQS/@@download/ENCFF475RQS.fastq.gz Illumina Genome Analyzer /files/ENCFF868CXX/, /files/ENCFF205VUD/, /files/ENCFF536PXJ/ released s3://encode-public/2017/06/15/9941a4c7-3566-42cb-9e17-1820c746caba/ENCFF475RQS.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF462DBN fastq fastq reads ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 2 2_1 36 single-ended 557152586 Kevin White, UChicago 68815fb9608a319f601d2420d3b87580 https://www.encodeproject.org/files/ENCFF462DBN/@@download/ENCFF462DBN.fastq.gz Illumina Genome Analyzer /files/ENCFF868CXX/, /files/ENCFF205VUD/, /files/ENCFF536PXJ/ released s3://encode-public/2017/06/15/8d1233b4-1c4a-4400-ad59-1fa8bae58243/ENCFF462DBN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF559FVI bam bam alignments dm3 ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 36 /files/ENCFF059UHX/, /files/ENCFF475RQS/, /files/ENCFF143CGO/, /files/ENCFF462DBN/ 1896545756 Kevin White, UChicago 134f826105b6ff8ff731d6865e75aa8f https://www.encodeproject.org/files/ENCFF559FVI/@@download/ENCFF559FVI.bam released s3://encode-public/2017/06/18/b39b6330-fa88-4aa4-adac-172c84de2142/ENCFF559FVI.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF905AEO bam bam alignments dm6 ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 36 /files/ENCFF479RCH/, /files/ENCFF475RQS/, /files/ENCFF143CGO/, /files/ENCFF462DBN/ 1891280941 Kevin White, UChicago afc788b45fcf46973629b7c055c21cd9 https://www.encodeproject.org/files/ENCFF905AEO/@@download/ENCFF905AEO.bam released s3://encode-public/2017/06/28/cdc04b63-52cb-4e90-8bc1-f00e4ecbba4c/ENCFF905AEO.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF774BGS bigWig bigWig signal of unique reads dm3 ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF559FVI/ 15442276 Kevin White, UChicago 1342a201451b0599978b0d0ddcc620d9 https://www.encodeproject.org/files/ENCFF774BGS/@@download/ENCFF774BGS.bigWig released s3://encode-public/2017/06/29/5bd632d8-ee5e-4b12-ac92-cd8dab50a7c8/ENCFF774BGS.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF776VJZ bigWig bigWig read-depth normalized signal dm3 ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF559FVI/ 15432684 Kevin White, UChicago f060975d1a0fec9528c97a19e482f235 https://www.encodeproject.org/files/ENCFF776VJZ/@@download/ENCFF776VJZ.bigWig released s3://encode-public/2017/06/29/195f25a6-6eaf-48f6-bfa2-d58ed69d6e41/ENCFF776VJZ.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF794MYX bigWig bigWig read-depth normalized signal dm6 ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF905AEO/ 17607730 Kevin White, UChicago df4a0ba298875ead1ae164a5aa72811a https://www.encodeproject.org/files/ENCFF794MYX/@@download/ENCFF794MYX.bigWig released s3://encode-public/2017/06/30/373f3db4-9e22-447d-9643-4883d390a04f/ENCFF794MYX.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF949FEQ bigWig bigWig signal of unique reads dm6 ENCSR639VKM Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF905AEO/ 17602910 Kevin White, UChicago aaf0c3f87598e2e51801cc9fa929d835 https://www.encodeproject.org/files/ENCFF949FEQ/@@download/ENCFF949FEQ.bigWig released s3://encode-public/2017/06/30/22fc913f-8585-49e1-af64-935ee2bf7f8a/ENCFF949FEQ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF465BEY fastq fastq reads ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 167936430 Michael Snyder, Stanford d88af9c653df37c7bcd8ed384610230d https://www.encodeproject.org/files/ENCFF465BEY/@@download/ENCFF465BEY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ecfc5073-11a4-4ae1-aec7-ab2e9398dfb3/ENCFF465BEY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF081FMB fastq fastq reads ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 175379917 Michael Snyder, Stanford 4cc0f2b8e54a20f8d068a94a5dd0b96f https://www.encodeproject.org/files/ENCFF081FMB/@@download/ENCFF081FMB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4ff1be11-c0b8-444e-8b04-0088f4151809/ENCFF081FMB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF188YQZ bam bam alignments ce10 ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF081FMB/, /files/ENCFF465BEY/, /files/ENCFF987UMF/ 456273641 Kevin White, UChicago ed548685707306428e22377a767ca3a7 https://www.encodeproject.org/files/ENCFF188YQZ/@@download/ENCFF188YQZ.bam released s3://encode-public/2016/10/18/8a77b562-d93b-4dff-b23e-92afc8a742c3/ENCFF188YQZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF175CSG bam bam alignments ce11 ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF081FMB/, /files/ENCFF465BEY/, /files/ENCFF586MOL/ 456821324 Kevin White, UChicago 845fe1f216c53ae1f09407cfdb8b639f https://www.encodeproject.org/files/ENCFF175CSG/@@download/ENCFF175CSG.bam released s3://encode-public/2016/10/19/ad03b02a-74fb-4d82-8933-fb1166ab9409/ENCFF175CSG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF389UZG bigWig bigWig signal of unique reads ce10 ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF188YQZ/ 10005016 Kevin White, UChicago 84b0719a8597ba72f9244f42682c991f https://www.encodeproject.org/files/ENCFF389UZG/@@download/ENCFF389UZG.bigWig released s3://encode-public/2016/10/20/920e4a32-a518-4710-9de6-a6c3c90d60f0/ENCFF389UZG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF883GVJ bigWig bigWig read-depth normalized signal ce10 ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF188YQZ/ 10052787 Kevin White, UChicago 4e7e3e6b89bd6cac3ef6534a732efd7a https://www.encodeproject.org/files/ENCFF883GVJ/@@download/ENCFF883GVJ.bigWig released s3://encode-public/2016/10/20/742cea0e-327b-42d7-a8d2-3fa0109784d2/ENCFF883GVJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF766KDC bigWig bigWig read-depth normalized signal ce11 ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF175CSG/ 10045864 Kevin White, UChicago 7f849ef3a04dc0183a07940913c050a2 https://www.encodeproject.org/files/ENCFF766KDC/@@download/ENCFF766KDC.bigWig released s3://encode-public/2016/10/20/60642203-2fcd-483c-975a-b57227d234a9/ENCFF766KDC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF630YDB bigWig bigWig signal of unique reads ce11 ENCSR117DIE Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF175CSG/ 10001527 Kevin White, UChicago c2346d5e2c81851addc75ab2f4ddeb66 https://www.encodeproject.org/files/ENCFF630YDB/@@download/ENCFF630YDB.bigWig released s3://encode-public/2016/10/20/b3c44875-c9c7-4b67-bbb3-ccc3f17a1dde/ENCFF630YDB.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF174XJR fastq fastq reads ENCSR480NNC Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1744172253 Zhiping Weng, UMass 690f286d37993e86c0e4f3eccec61822 SRA:SRR578715 https://www.encodeproject.org/files/ENCFF174XJR/@@download/ENCFF174XJR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/9f86fc8e-b50c-4006-9a45-1d1710b5ab7f/ENCFF174XJR.fastq.gz mild to moderate bottlenecking, low read length ENCFF303FKW bam bam unfiltered alignments GRCh38 ENCSR480NNC Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF174XJR/ 2088558373 ENCODE Processing Pipeline 15afc4bb90526939e37c66c7f5914dd4 https://www.encodeproject.org/files/ENCFF303FKW/@@download/ENCFF303FKW.bam released s3://encode-public/2016/12/19/80fbb669-1fe1-4f8e-9ad2-0a6257e49cfd/ENCFF303FKW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF521DPV bam bam unfiltered alignments hg19 ENCSR480NNC Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF174XJR/ 2077682986 ENCODE Processing Pipeline 9e8fa687d0a4334c946a42503fe4d08b https://www.encodeproject.org/files/ENCFF521DPV/@@download/ENCFF521DPV.bam released s3://encode-public/2016/12/19/b40d7417-55b2-4db6-8808-1e6090db0939/ENCFF521DPV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF623LBS bam bam alignments GRCh38 ENCSR480NNC Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF174XJR/ 1155177445 ENCODE Processing Pipeline ea665492ee1a773985046df59267052d https://www.encodeproject.org/files/ENCFF623LBS/@@download/ENCFF623LBS.bam released s3://encode-public/2016/12/19/7bb82f34-2d58-4fc1-87be-6ee277c90abd/ENCFF623LBS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF932VMB bam bam alignments hg19 ENCSR480NNC Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF174XJR/ 1155374429 ENCODE Processing Pipeline 733dfb7416638fa77f8b7fb9b3a47e0d https://www.encodeproject.org/files/ENCFF932VMB/@@download/ENCFF932VMB.bam released s3://encode-public/2016/12/19/69f1bc2b-27d9-497a-a350-d170e3c5bd3f/ENCFF932VMB.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF671JXJ bam bam unfiltered alignments GRCh38 ENCSR480NNC Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF174XJR/, /files/ENCFF110MCL/ 2033502061 ENCODE Processing Pipeline 23b21e3855b221a5e9a0bd07f48f9204 https://www.encodeproject.org/files/ENCFF671JXJ/@@download/ENCFF671JXJ.bam released s3://encode-public/2020/10/08/a571798b-d4ea-43f6-8be6-f3bde39aa8d4/ENCFF671JXJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF367QNN bam bam alignments GRCh38 ENCSR480NNC Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF174XJR/, /files/ENCFF110MCL/ 1270128336 ENCODE Processing Pipeline 145666fa330469897341b77b82b850b8 https://www.encodeproject.org/files/ENCFF367QNN/@@download/ENCFF367QNN.bam released s3://encode-public/2020/10/08/d090af7a-ec22-4ed3-9c3c-9183908758ff/ENCFF367QNN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF916HOD fastq fastq reads ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1491897823 Zhiping Weng, UMass c340367fed02f47a7cd84f5559df138f SRA:SRR449628 https://www.encodeproject.org/files/ENCFF916HOD/@@download/ENCFF916HOD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/2c847242-353a-474e-8bd5-06766dff13a2/ENCFF916HOD.fastq.gz low read length ENCFF289HOH bam bam unfiltered alignments hg19 ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF916HOD/ 1850091967 ENCODE Processing Pipeline 7569026a1ec4a10716fa521fd503e752 https://www.encodeproject.org/files/ENCFF289HOH/@@download/ENCFF289HOH.bam released s3://encode-public/2016/12/19/c110794e-6a21-4b4d-a15e-6cff642664ce/ENCFF289HOH.bam ENCODE3 hg19 archived low read length ENCFF436DYG bam bam unfiltered alignments GRCh38 ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF916HOD/ 1863695233 ENCODE Processing Pipeline c1f9bde3e70530f3ee050d2ea029d492 https://www.encodeproject.org/files/ENCFF436DYG/@@download/ENCFF436DYG.bam released s3://encode-public/2016/12/19/d7ee64eb-4744-4a55-b066-a8e3ea2cbadf/ENCFF436DYG.bam ENCODE3 GRCh38 archived low read length ENCFF165BBY bam bam alignments hg19 ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF916HOD/ 1215336542 ENCODE Processing Pipeline 8b8dde9e6208a7a73441d23e769f2754 https://www.encodeproject.org/files/ENCFF165BBY/@@download/ENCFF165BBY.bam released s3://encode-public/2016/12/19/36d39d26-c069-41e8-b548-deb226b297bf/ENCFF165BBY.bam ENCODE3 hg19 archived low read length ENCFF969DRM bam bam alignments GRCh38 ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF916HOD/ 1215068181 ENCODE Processing Pipeline 02837b1799abd585df9316da07c99246 https://www.encodeproject.org/files/ENCFF969DRM/@@download/ENCFF969DRM.bam released s3://encode-public/2016/12/19/aaae36ca-1daa-4e00-887d-1855e63b1a1e/ENCFF969DRM.bam ENCODE3 GRCh38 archived low read length ENCFF047ITI tagAlign tagAlign alignments hg19 ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF916HOD/ 196593859 Anshul Kundaje, Stanford aa631806bec0c824756060f8475929e2 https://www.encodeproject.org/files/ENCFF047ITI/@@download/ENCFF047ITI.tagAlign.gz archived s3://encode-public/2016/02/11/d836ff31-e717-4fe0-8b13-92491969fec2/ENCFF047ITI.tagAlign.gz low read length ENCFF601GFT bam bam unfiltered alignments GRCh38 ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF916HOD/ 1812557365 ENCODE Processing Pipeline 0084ae27225aa42322a4e98870a160d4 https://www.encodeproject.org/files/ENCFF601GFT/@@download/ENCFF601GFT.bam released s3://encode-public/2020/08/06/9038c6fc-ba53-450f-9321-bb55a5c8bf80/ENCFF601GFT.bam ENCODE4 GRCh38 released low read length ENCFF378XXA bam bam alignments GRCh38 ENCSR239LAP Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF916HOD/ 1326500025 ENCODE Processing Pipeline deea048e1e678af0bf087047dd7259c0 https://www.encodeproject.org/files/ENCFF378XXA/@@download/ENCFF378XXA.bam released s3://encode-public/2020/08/06/e7bbf259-7e89-46f9-b14b-db9150702a64/ENCFF378XXA.bam ENCODE4 GRCh38 released low read length ENCFF420ARR bam bam redacted alignments GRCh38 ENCSR935BOB Control ChIP-seq /human-donors/ENCDO477HWZ/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF870UYB/, /files/ENCFF643CGH/ 465661216 ENCODE Processing Pipeline 7aa4bd35395edf96e1f74309f68ab622 https://www.encodeproject.org/files/ENCFF420ARR/@@download/ENCFF420ARR.bam released s3://encode-public/2018/01/18/47bc0644-54df-4efe-80d1-4480d5076c9e/ENCFF420ARR.bam ENCODE3 GRCh38 archived low read length ENCFF776YPH bam bam redacted unfiltered alignments GRCh38 ENCSR935BOB Control ChIP-seq /human-donors/ENCDO477HWZ/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF870UYB/, /files/ENCFF643CGH/ 670889420 ENCODE Processing Pipeline efe78af08611678972cf4fba9629688a https://www.encodeproject.org/files/ENCFF776YPH/@@download/ENCFF776YPH.bam released s3://encode-public/2018/01/18/0d87070c-a8b5-49e9-82c4-1496e8322f25/ENCFF776YPH.bam ENCODE3 GRCh38 archived low read length ENCFF124RKJ bam bam redacted unfiltered alignments hg19 ENCSR935BOB Control ChIP-seq /human-donors/ENCDO477HWZ/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF870UYB/, /files/ENCFF807MUK/ 663677960 ENCODE Processing Pipeline 8d1586dee259eabafc6ad7d58f18011c https://www.encodeproject.org/files/ENCFF124RKJ/@@download/ENCFF124RKJ.bam released s3://encode-public/2018/01/19/f99b06e0-b4ed-4e48-9b9d-6342cda11e0e/ENCFF124RKJ.bam ENCODE3 hg19 archived low read length ENCFF590QWG bam bam redacted alignments hg19 ENCSR935BOB Control ChIP-seq /human-donors/ENCDO477HWZ/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF870UYB/, /files/ENCFF807MUK/ 465710006 ENCODE Processing Pipeline a1eddec73119ab2a1cdbd00833819c33 https://www.encodeproject.org/files/ENCFF590QWG/@@download/ENCFF590QWG.bam released s3://encode-public/2018/01/19/484648ca-3d0b-49e2-bd78-9eb90a523ab7/ENCFF590QWG.bam ENCODE3 hg19 archived low read length ENCFF262XYP bam bam redacted alignments GRCh38 ENCSR935BOB Control ChIP-seq /human-donors/ENCDO477HWZ/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF870UYB/, /files/ENCFF110MCL/ 1294193014 ENCODE Processing Pipeline 9b1e4e53f7cca7a37078758c37ebfc67 https://www.encodeproject.org/files/ENCFF262XYP/@@download/ENCFF262XYP.bam released s3://encode-public/2021/01/27/a5a6473a-f61d-4238-ab46-523284d21c84/ENCFF262XYP.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF812XUX fastq fastq reads ENCSR636YHR Control ChIP-seq /fly-donors/ENCDO642HQK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37560/'], '@type': ['Target', 'Item'], 'name': 'Mes4-dmelanogaster', 'label': 'Mes4', '@id': '/targets/Mes4-dmelanogaster/', 'title': 'Mes4 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3fefe3f0-0ab8-455b-b19e-c72c3fcbc8b7', 'status': 'released'} dm3 2R 18289242 18310419 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 521664724 Kevin White, UChicago 05fc396c83e52523671d422fb193e603 https://www.encodeproject.org/files/ENCFF812XUX/@@download/ENCFF812XUX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/226a82da-b25a-4611-9972-24c19121a0b5/ENCFF812XUX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF865PFP bam bam alignments dm3 ENCSR636YHR Control ChIP-seq /fly-donors/ENCDO642HQK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37560/'], '@type': ['Target', 'Item'], 'name': 'Mes4-dmelanogaster', 'label': 'Mes4', '@id': '/targets/Mes4-dmelanogaster/', 'title': 'Mes4 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3fefe3f0-0ab8-455b-b19e-c72c3fcbc8b7', 'status': 'released'} dm3 2R 18289242 18310419 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF812XUX/ 772511787 Kevin White, UChicago 0639748d13d0ed626f0ebf057e6f05a5 https://www.encodeproject.org/files/ENCFF865PFP/@@download/ENCFF865PFP.bam released s3://encode-public/2015/10/22/e488034b-6d83-4ee5-981b-5627e3fab3d3/ENCFF865PFP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF260KYB bigWig bigWig signal of unique reads dm3 ENCSR636YHR Control ChIP-seq /fly-donors/ENCDO642HQK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37560/'], '@type': ['Target', 'Item'], 'name': 'Mes4-dmelanogaster', 'label': 'Mes4', '@id': '/targets/Mes4-dmelanogaster/', 'title': 'Mes4 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3fefe3f0-0ab8-455b-b19e-c72c3fcbc8b7', 'status': 'released'} dm3 2R 18289242 18310419 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865PFP/ 15325182 Kevin White, UChicago d9baa1cf33e2f8d970728d08f4410e94 https://www.encodeproject.org/files/ENCFF260KYB/@@download/ENCFF260KYB.bigWig released s3://encode-public/2015/10/22/c11c4e11-2eac-4899-997b-12d117e2fa65/ENCFF260KYB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF822SFE bigWig bigWig read-depth normalized signal dm3 ENCSR636YHR Control ChIP-seq /fly-donors/ENCDO642HQK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37560/'], '@type': ['Target', 'Item'], 'name': 'Mes4-dmelanogaster', 'label': 'Mes4', '@id': '/targets/Mes4-dmelanogaster/', 'title': 'Mes4 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3fefe3f0-0ab8-455b-b19e-c72c3fcbc8b7', 'status': 'released'} dm3 2R 18289242 18310419 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865PFP/ 15374152 Kevin White, UChicago a301cc2cdd98a587764d00d324f7bc77 https://www.encodeproject.org/files/ENCFF822SFE/@@download/ENCFF822SFE.bigWig released s3://encode-public/2015/10/22/767c8efe-2802-4592-99d4-e88d65856a4a/ENCFF822SFE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF918JYS bam bam alignments dm6 ENCSR636YHR Control ChIP-seq /fly-donors/ENCDO642HQK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37560/'], '@type': ['Target', 'Item'], 'name': 'Mes4-dmelanogaster', 'label': 'Mes4', '@id': '/targets/Mes4-dmelanogaster/', 'title': 'Mes4 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3fefe3f0-0ab8-455b-b19e-c72c3fcbc8b7', 'status': 'released'} dm3 2R 18289242 18310419 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF812XUX/ 769351339 Kevin White, UChicago e77f683832ad43f9efb2805748758d69 https://www.encodeproject.org/files/ENCFF918JYS/@@download/ENCFF918JYS.bam released s3://encode-public/2016/04/22/6b3bec08-9039-47fa-b0e2-d0443475f457/ENCFF918JYS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF300HLN bigWig bigWig signal of unique reads dm6 ENCSR636YHR Control ChIP-seq /fly-donors/ENCDO642HQK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37560/'], '@type': ['Target', 'Item'], 'name': 'Mes4-dmelanogaster', 'label': 'Mes4', '@id': '/targets/Mes4-dmelanogaster/', 'title': 'Mes4 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3fefe3f0-0ab8-455b-b19e-c72c3fcbc8b7', 'status': 'released'} dm3 2R 18289242 18310419 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF918JYS/ 17436982 Kevin White, UChicago dfe3ad94e1dccef289e3c40b1ab21cec https://www.encodeproject.org/files/ENCFF300HLN/@@download/ENCFF300HLN.bigWig released s3://encode-public/2016/06/20/c44bc93b-a759-4b7c-98d0-467cfe88181b/ENCFF300HLN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF481KAQ bigWig bigWig read-depth normalized signal dm6 ENCSR636YHR Control ChIP-seq /fly-donors/ENCDO642HQK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37560/'], '@type': ['Target', 'Item'], 'name': 'Mes4-dmelanogaster', 'label': 'Mes4', '@id': '/targets/Mes4-dmelanogaster/', 'title': 'Mes4 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3fefe3f0-0ab8-455b-b19e-c72c3fcbc8b7', 'status': 'released'} dm3 2R 18289242 18310419 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF918JYS/ 17499050 Kevin White, UChicago 4c2b9403760a6497ce3eb9f8cc495bb7 https://www.encodeproject.org/files/ENCFF481KAQ/@@download/ENCFF481KAQ.bigWig released s3://encode-public/2016/06/20/dfd64626-fb21-472a-9e5a-b61cb115df88/ENCFF481KAQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF671YXZ bam bam redacted alignments GRCh38 ENCSR464KBY Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF156GVP/, /files/ENCFF643CGH/ 610805231 ENCODE Processing Pipeline a374cf5352a61bd15b18f91a31504fce https://www.encodeproject.org/files/ENCFF671YXZ/@@download/ENCFF671YXZ.bam released s3://encode-public/2017/11/09/7cafd5d8-8106-4d3e-a559-cc245d355451/ENCFF671YXZ.bam ENCODE3 GRCh38 archived ENCFF906STP bam bam redacted unfiltered alignments GRCh38 ENCSR464KBY Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF156GVP/, /files/ENCFF643CGH/ 742623814 ENCODE Processing Pipeline cbb4f254cc66fae10bd00e233900430f https://www.encodeproject.org/files/ENCFF906STP/@@download/ENCFF906STP.bam released s3://encode-public/2017/11/09/ee57bdee-a558-475d-bd63-cb3bbed93b78/ENCFF906STP.bam ENCODE3 GRCh38 archived ENCFF638DJS bam bam redacted unfiltered alignments hg19 ENCSR464KBY Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF156GVP/, /files/ENCFF807MUK/ 728886361 ENCODE Processing Pipeline 1d287c3bc2e2d3f2bb6e37a385084f6c https://www.encodeproject.org/files/ENCFF638DJS/@@download/ENCFF638DJS.bam released s3://encode-public/2018/01/20/701b6eb2-14a4-4d4b-834c-d78216e1b31d/ENCFF638DJS.bam ENCODE3 hg19 archived ENCFF694RNQ bam bam redacted alignments hg19 ENCSR464KBY Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF156GVP/, /files/ENCFF807MUK/ 609841145 ENCODE Processing Pipeline 1353750ff9ff4f3ca298eec4b81b6490 https://www.encodeproject.org/files/ENCFF694RNQ/@@download/ENCFF694RNQ.bam released s3://encode-public/2018/01/20/d3aae339-4284-4986-b123-eebd3cd5e6b7/ENCFF694RNQ.bam ENCODE3 hg19 archived ENCFF695NBK bam bam redacted alignments GRCh38 ENCSR464KBY Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF072MUX/ 3712245678 ENCODE Processing Pipeline bbe256ee188c1ad9434e02eea587e3f2 https://www.encodeproject.org/files/ENCFF695NBK/@@download/ENCFF695NBK.bam released s3://encode-public/2021/01/28/5ade4ce3-41cc-40f7-ba6b-51bc114324be/ENCFF695NBK.bam ENCODE4 v1.7.0 GRCh38 released ENCFF117IFN fastq fastq reads ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 78512771 Michael Snyder, Stanford 82b09b84d5b5446a21447d128f5d20e3 https://www.encodeproject.org/files/ENCFF117IFN/@@download/ENCFF117IFN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d40e1ad0-bb14-4cc5-b5ce-298014419646/ENCFF117IFN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF136PPZ fastq fastq reads ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 97616424 Michael Snyder, Stanford 3fd204ff1832f4b0b1b15e16b2f55e6c https://www.encodeproject.org/files/ENCFF136PPZ/@@download/ENCFF136PPZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e7c34d6f-ba3b-43f2-a035-1414cd756ba3/ENCFF136PPZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF142BIP bam bam alignments ce10 ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF117IFN/, /files/ENCFF136PPZ/, /files/ENCFF987UMF/ 231665918 Kevin White, UChicago 2a3bd9bfd7ef2d53c49b0fefcfe984ad https://www.encodeproject.org/files/ENCFF142BIP/@@download/ENCFF142BIP.bam released s3://encode-public/2016/10/18/0cbcc3cf-cee1-4b39-a2da-230cbddb293f/ENCFF142BIP.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF155WHP bam bam alignments ce11 ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF117IFN/, /files/ENCFF136PPZ/, /files/ENCFF586MOL/ 231922610 Kevin White, UChicago 7c86cd482039b8f839380dfcc52090f7 https://www.encodeproject.org/files/ENCFF155WHP/@@download/ENCFF155WHP.bam released s3://encode-public/2016/10/18/8831c31b-5d42-4f5b-a766-1c91f83f3d8c/ENCFF155WHP.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF959EJD bigWig bigWig read-depth normalized signal ce10 ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF142BIP/ 10032377 Kevin White, UChicago a48a27d342c2b366ef7c4ff812f8fa3b https://www.encodeproject.org/files/ENCFF959EJD/@@download/ENCFF959EJD.bigWig released s3://encode-public/2016/10/20/b7e3b7c9-8f40-4c0d-9156-398ef9e0459e/ENCFF959EJD.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF671XGM bigWig bigWig signal of unique reads ce10 ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF142BIP/ 10011291 Kevin White, UChicago 96599f031d47dfdbdaa6f17611aca0f9 https://www.encodeproject.org/files/ENCFF671XGM/@@download/ENCFF671XGM.bigWig released s3://encode-public/2016/10/20/73ec7256-e61b-4808-8bb6-713547a0bbdd/ENCFF671XGM.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF890MUW bigWig bigWig signal of unique reads ce11 ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF155WHP/ 10007671 Kevin White, UChicago ac889dbad97495260ae95083286206ef https://www.encodeproject.org/files/ENCFF890MUW/@@download/ENCFF890MUW.bigWig released s3://encode-public/2016/10/20/c026e839-86c2-481b-8a9d-c8015ea5be0a/ENCFF890MUW.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF626KNE bigWig bigWig read-depth normalized signal ce11 ENCSR758JFY Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF155WHP/ 10029057 Kevin White, UChicago 721e6ebe63fe4bc81072578d10d74569 https://www.encodeproject.org/files/ENCFF626KNE/@@download/ENCFF626KNE.bigWig released s3://encode-public/2016/10/20/077840ad-8807-4710-8bb3-6cb4a97ac95f/ENCFF626KNE.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF164YOX fastq fastq reads ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 119487438 Michael Snyder, Stanford d58b8e76ec6cb567b99b32d3682ef18c https://www.encodeproject.org/files/ENCFF164YOX/@@download/ENCFF164YOX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/c67f2112-f9c1-41f2-93de-69fa8d5b9157/ENCFF164YOX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF730LWT fastq fastq reads ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 142375778 Michael Snyder, Stanford 5c9abff86848296a5091e49e4a4b5e84 https://www.encodeproject.org/files/ENCFF730LWT/@@download/ENCFF730LWT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/f07ce2e3-8b12-4b0f-b7dc-d5050dac3f7f/ENCFF730LWT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF215IUB bam bam alignments ce10 ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF730LWT/, /files/ENCFF164YOX/, /files/ENCFF987UMF/ 310573544 Kevin White, UChicago 6fb74b08c8f27368e8b84b0a44b19a3f https://www.encodeproject.org/files/ENCFF215IUB/@@download/ENCFF215IUB.bam released s3://encode-public/2016/10/18/7140f81a-4654-4891-a5bb-806104ff2ccd/ENCFF215IUB.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF485DKI bam bam alignments ce11 ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF730LWT/, /files/ENCFF164YOX/, /files/ENCFF586MOL/ 310850906 Kevin White, UChicago bde2bdb36d9e49934bc4d3dc9f687e91 https://www.encodeproject.org/files/ENCFF485DKI/@@download/ENCFF485DKI.bam released s3://encode-public/2016/10/19/ac11d294-d31e-4d62-a83b-813dc396f84e/ENCFF485DKI.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF620SKX bigWig bigWig read-depth normalized signal ce10 ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF215IUB/ 10002834 Kevin White, UChicago 9a202170e1994cacddef0b6f6ab529b2 https://www.encodeproject.org/files/ENCFF620SKX/@@download/ENCFF620SKX.bigWig released s3://encode-public/2016/10/20/763595d8-a179-4707-80ae-1b4a154ebb9d/ENCFF620SKX.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF231QNL bigWig bigWig signal of unique reads ce10 ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF215IUB/ 10002917 Kevin White, UChicago 743ff0743ca45a8b1bc6b657dee01ce5 https://www.encodeproject.org/files/ENCFF231QNL/@@download/ENCFF231QNL.bigWig released s3://encode-public/2016/10/20/fe6e7f16-748a-4382-b369-d1f090214b8c/ENCFF231QNL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF789ESV bigWig bigWig read-depth normalized signal ce11 ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF485DKI/ 10001124 Kevin White, UChicago dd6fef255936f7a5f2ad63e704dcec6d https://www.encodeproject.org/files/ENCFF789ESV/@@download/ENCFF789ESV.bigWig released s3://encode-public/2016/10/20/93c21266-54c0-456e-8a5d-2b33488e6cd5/ENCFF789ESV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF127WID bigWig bigWig signal of unique reads ce11 ENCSR077JEX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF485DKI/ 10001327 Kevin White, UChicago 5d3a3995f8f3ce28dc959f522e91345b https://www.encodeproject.org/files/ENCFF127WID/@@download/ENCFF127WID.bigWig released s3://encode-public/2016/10/20/bf318aa0-2aa4-4ed1-9d1f-6022f87d490b/ENCFF127WID.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF809NDL fastq fastq reads ENCSR301FVM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-01-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF546WRK/ 2292878682 Michael Snyder, Stanford 322760df4623cc71867eec3a611c1c0c SRA:SRR14832446 https://www.encodeproject.org/files/ENCFF809NDL/@@download/ENCFF809NDL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/10/30/9156dc75-d1cf-467e-af60-085e7aed13d8/ENCFF809NDL.fastq.gz ENCFF546WRK fastq fastq reads ENCSR301FVM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-01-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF809NDL/ 2605078003 Michael Snyder, Stanford f62d129f5224a9b62baeb5e83ca57174 SRA:SRR14832446 https://www.encodeproject.org/files/ENCFF546WRK/@@download/ENCFF546WRK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/10/30/066ffddc-0961-421a-8e28-7a2337dfd2da/ENCFF546WRK.fastq.gz ENCFF225BOY bam bam unfiltered alignments GRCh38 ENCSR301FVM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-01-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF546WRK/, /files/ENCFF110MCL/, /files/ENCFF809NDL/ 4974272297 ENCODE Processing Pipeline 69121fb021127b6581e952e628d5abf9 https://www.encodeproject.org/files/ENCFF225BOY/@@download/ENCFF225BOY.bam released s3://encode-public/2020/11/04/5e9400d9-1b9d-45ab-8971-c204bac57045/ENCFF225BOY.bam ENCODE4 v1.6.1 GRCh38 released ENCFF845ALL bam bam alignments GRCh38 ENCSR301FVM Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-01-06 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF546WRK/, /files/ENCFF110MCL/, /files/ENCFF809NDL/ 3929973429 ENCODE Processing Pipeline 8d277de985bd15dd959d5572aee20181 https://www.encodeproject.org/files/ENCFF845ALL/@@download/ENCFF845ALL.bam released s3://encode-public/2020/11/04/ed26f6a0-8635-4ca3-86ac-df6e55ada038/ENCFF845ALL.bam ENCODE4 v1.6.1 GRCh38 released ENCFF517LNK tagAlign tagAlign alignments hg19 ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF869JIH/ 260168173 Anshul Kundaje, Stanford b507fc90f33f29c15457eab17613e836 https://www.encodeproject.org/files/ENCFF517LNK/@@download/ENCFF517LNK.tagAlign.gz archived s3://encode-public/2016/03/30/44161e8a-9494-455a-b1c4-02028e2ab857/ENCFF517LNK.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF869JIH fastq fastq reads ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2580536522 Zhiping Weng, UMass 4f2153a03e54b20a1dfb93b97c1f4152 SRA:SRR400585 https://www.encodeproject.org/files/ENCFF869JIH/@@download/ENCFF869JIH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/cf9e4a4c-db7c-412f-a5cc-95ea9e244777/ENCFF869JIH.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF581TJF bam bam unfiltered alignments hg19 ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF869JIH/ 3016865312 ENCODE Processing Pipeline 2c7436bbf46988871f70c030def390bb https://www.encodeproject.org/files/ENCFF581TJF/@@download/ENCFF581TJF.bam released s3://encode-public/2016/12/19/16815146-6338-4373-b4ef-96842945df94/ENCFF581TJF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF182KWD bam bam unfiltered alignments GRCh38 ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF869JIH/ 3033295509 ENCODE Processing Pipeline df051ca48355ffcc789466dec5cb0478 https://www.encodeproject.org/files/ENCFF182KWD/@@download/ENCFF182KWD.bam released s3://encode-public/2016/12/19/b1ba79a3-637a-4d6e-a9c8-8ad2ec6b3e5d/ENCFF182KWD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF608DSA bam bam alignments hg19 ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF869JIH/ 1520408344 ENCODE Processing Pipeline e7171eb265e0a9206e237aa57797ec09 https://www.encodeproject.org/files/ENCFF608DSA/@@download/ENCFF608DSA.bam released s3://encode-public/2016/12/19/0fa1eff9-ae3f-49df-9cac-8cdb7b48ea43/ENCFF608DSA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF206BSE bam bam alignments GRCh38 ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF869JIH/ 1521054592 ENCODE Processing Pipeline 982b96a706475e587cabcd1a05233565 https://www.encodeproject.org/files/ENCFF206BSE/@@download/ENCFF206BSE.bam released s3://encode-public/2016/12/19/9b1db954-e43c-4e3f-9cfa-1d7169c93be6/ENCFF206BSE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF045VPR bam bam unfiltered alignments GRCh38 ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF869JIH/, /files/ENCFF110MCL/ 2934731723 ENCODE Processing Pipeline 76bc664ec3c7e58277e674d5a84a0c61 https://www.encodeproject.org/files/ENCFF045VPR/@@download/ENCFF045VPR.bam released s3://encode-public/2020/11/13/57bb0bc7-0177-4387-b310-b8485d9fc0f1/ENCFF045VPR.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF515ZWA bam bam alignments GRCh38 ENCSR960RHK Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF869JIH/, /files/ENCFF110MCL/ 1698304782 ENCODE Processing Pipeline f6f1b4def75d9b19d117fb43c255efaa https://www.encodeproject.org/files/ENCFF515ZWA/@@download/ENCFF515ZWA.bam released s3://encode-public/2020/11/13/d7456a47-08e3-4527-8aea-e4e135c8f3cd/ENCFF515ZWA.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF025MSC tagAlign tagAlign alignments hg19 ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF108OEG/ 110922045 Anshul Kundaje, Stanford 7173de238a0ebacf618fd328c4e80370 https://www.encodeproject.org/files/ENCFF025MSC/@@download/ENCFF025MSC.tagAlign.gz archived s3://encode-public/2016/03/30/d8d66c3f-5dd5-4bcb-89af-c8f555ff4423/ENCFF025MSC.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF108OEG fastq fastq reads ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 841458411 Zhiping Weng, UMass 35992e830fee27316f1985c6d0aa1cfe SRA:SRR486250 https://www.encodeproject.org/files/ENCFF108OEG/@@download/ENCFF108OEG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/fb85fb1b-43fe-4ee2-a7d1-29f148f18e35/ENCFF108OEG.fastq.gz low read depth, low read length ENCFF834ULF bam bam unfiltered alignments GRCh38 ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF108OEG/ 1014762342 ENCODE Processing Pipeline bad73690c7e8d21e8b4e883214a003dc https://www.encodeproject.org/files/ENCFF834ULF/@@download/ENCFF834ULF.bam released s3://encode-public/2020/10/08/965a4dc6-374a-40c3-b14a-5a209d5abb27/ENCFF834ULF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF506OKR bam bam alignments GRCh38 ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF108OEG/ 712166174 ENCODE Processing Pipeline 902a1aeb6af1c22bf98464ebb59764e1 https://www.encodeproject.org/files/ENCFF506OKR/@@download/ENCFF506OKR.bam released s3://encode-public/2020/10/08/9c00db90-fa84-4320-ba93-a2c83472f6ef/ENCFF506OKR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF015YGZ bam bam unfiltered alignments GRCh38 ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF108OEG/ 1048083534 ENCODE Processing Pipeline c242a96097a38d3080356d8c1a9bef0c https://www.encodeproject.org/files/ENCFF015YGZ/@@download/ENCFF015YGZ.bam released s3://encode-public/2016/12/19/d68244f5-2b26-4b09-b8de-9e81f792f8e5/ENCFF015YGZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF993LSH bam bam alignments GRCh38 ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF108OEG/ 645336899 ENCODE Processing Pipeline cde9a4a68dcdf7182d325327a43c7a55 https://www.encodeproject.org/files/ENCFF993LSH/@@download/ENCFF993LSH.bam released s3://encode-public/2016/12/19/56727664-1731-41d9-96f3-0f3022dcc168/ENCFF993LSH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF831YYD bam bam unfiltered alignments hg19 ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF108OEG/ 1041426202 ENCODE Processing Pipeline b7080028d2b64ad063a175af4abd1215 https://www.encodeproject.org/files/ENCFF831YYD/@@download/ENCFF831YYD.bam released s3://encode-public/2016/12/19/3fec11c4-12a6-4fd5-81e9-d2054f213df5/ENCFF831YYD.bam ENCODE3 hg19 archived low read depth, low read length ENCFF783FIH bam bam alignments hg19 ENCSR049LCN Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF108OEG/ 645621702 ENCODE Processing Pipeline f762c5fabe92b2c595027d409e6bddf3 https://www.encodeproject.org/files/ENCFF783FIH/@@download/ENCFF783FIH.bam released s3://encode-public/2016/12/19/8b2be9bf-3640-4788-8dd4-11d4f4c0f4ed/ENCFF783FIH.bam ENCODE3 hg19 archived low read depth, low read length ENCFF468PMI tagAlign tagAlign alignments hg19 ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF312GXL/, /files/ENCFF046EFX/ 202955395 Anshul Kundaje, Stanford 91eb56ffd7ba686c11b024891ac40f21 https://www.encodeproject.org/files/ENCFF468PMI/@@download/ENCFF468PMI.tagAlign.gz archived s3://encode-public/2016/05/02/75ce35f6-d1e6-4ee0-8126-3252e90eed8b/ENCFF468PMI.tagAlign.gz Lab custom hg19 archived low read length ENCFF046EFX fastq fastq reads ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 799298147 Zhiping Weng, UMass ed0126497c42a0fefdbd87beed4ec731 SRA:SRR609625 https://www.encodeproject.org/files/ENCFF046EFX/@@download/ENCFF046EFX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/2d986894-742f-40cd-93dd-b2d1cbb8209a/ENCFF046EFX.fastq.gz low read length ENCFF312GXL fastq fastq reads ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 582802609 Zhiping Weng, UMass 3658a32d7cd25984488e3b0579c1e9ff SRA:SRR609624 https://www.encodeproject.org/files/ENCFF312GXL/@@download/ENCFF312GXL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/0435a13b-5d8d-42a5-8a30-e972e8f1bff2/ENCFF312GXL.fastq.gz low read length ENCFF139NTT bam bam unfiltered alignments GRCh38 ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF312GXL/, /files/ENCFF046EFX/ 1696276292 ENCODE Processing Pipeline b3f9bf88efe2ae617f9b20482defa499 https://www.encodeproject.org/files/ENCFF139NTT/@@download/ENCFF139NTT.bam released s3://encode-public/2020/10/08/1d0386ec-e035-4d33-b54f-73a2ba90f335/ENCFF139NTT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF457SGX bam bam unfiltered alignments GRCh38 ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF312GXL/, /files/ENCFF046EFX/, /files/ENCFF643CGH/ 1743260189 ENCODE Processing Pipeline 0d2a638db3f694219e9438cbf1478667 https://www.encodeproject.org/files/ENCFF457SGX/@@download/ENCFF457SGX.bam released s3://encode-public/2016/12/19/6fa5b7c8-bdfa-4d4e-ad62-fba8d9549b2f/ENCFF457SGX.bam ENCODE3 GRCh38 archived low read length ENCFF373SDS bam bam alignments GRCh38 ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF312GXL/, /files/ENCFF046EFX/, /files/ENCFF643CGH/ 1241772818 ENCODE Processing Pipeline baf8c958de46964e54f614be0ac33386 https://www.encodeproject.org/files/ENCFF373SDS/@@download/ENCFF373SDS.bam released s3://encode-public/2016/12/19/b2c9f93a-c4be-48e6-bf09-fa27cc8174d2/ENCFF373SDS.bam ENCODE3 GRCh38 archived low read length ENCFF358JWK bam bam unfiltered alignments hg19 ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF312GXL/, /files/ENCFF807MUK/, /files/ENCFF046EFX/ 1732922113 ENCODE Processing Pipeline d05f78baecefd1cc7c9522f7c9bde2a1 https://www.encodeproject.org/files/ENCFF358JWK/@@download/ENCFF358JWK.bam released s3://encode-public/2016/12/19/cb8dfe2e-4c6c-4b49-af9e-869232670b4a/ENCFF358JWK.bam ENCODE3 hg19 archived low read length ENCFF886AXE bam bam alignments hg19 ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF312GXL/, /files/ENCFF807MUK/, /files/ENCFF046EFX/ 1241930033 ENCODE Processing Pipeline dedca7adad1b22b0940c226c3898c2e2 https://www.encodeproject.org/files/ENCFF886AXE/@@download/ENCFF886AXE.bam released s3://encode-public/2016/12/19/5b43aa3c-679e-42e4-9db3-0761f5c88ba5/ENCFF886AXE.bam ENCODE3 hg19 archived low read length ENCFF198QJK bam bam alignments GRCh38 ENCSR300ZUS Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF312GXL/, /files/ENCFF046EFX/ 1344869292 ENCODE Processing Pipeline cda593164b2b03d271e590ce47a9986d https://www.encodeproject.org/files/ENCFF198QJK/@@download/ENCFF198QJK.bam released s3://encode-public/2020/10/08/139422d5-fc6b-4485-ba85-50125cf8fe16/ENCFF198QJK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF851GHE fastq fastq reads ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 single-ended 2234247381 Bradley Bernstein, Broad d1b9abc85e8c549672c57c37205d2610 https://www.encodeproject.org/files/ENCFF851GHE/@@download/ENCFF851GHE.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2015/12/22/08438c8e-3f4e-496d-a776-0acef78ec43d/ENCFF851GHE.fastq.gz ENCFF808PAO fastq fastq reads ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 paired-ended 2 /files/ENCFF765UYP/ 2474735551 Bradley Bernstein, Broad b1cee0638c0d4ce3c16e23b7e84271fb SRA:SRR5338699 https://www.encodeproject.org/files/ENCFF808PAO/@@download/ENCFF808PAO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/22/00225676-7ab7-47bb-be98-0250398bc3aa/ENCFF808PAO.fastq.gz ENCFF765UYP fastq fastq reads ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF808PAO/ 2403525385 Bradley Bernstein, Broad 3ea70fdaccc4451879f9f97fed3bc8b0 SRA:SRR5338699 https://www.encodeproject.org/files/ENCFF765UYP/@@download/ENCFF765UYP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/22/beafee4a-eef1-4329-8403-597111c014fb/ENCFF765UYP.fastq.gz ENCFF837SVG fastq fastq reads ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF327EQZ/ 1533059657 Bradley Bernstein, Broad 58e23fcde85df54dbf7089f4c8deeb00 SRA:SRR5338702 https://www.encodeproject.org/files/ENCFF837SVG/@@download/ENCFF837SVG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/810a32c6-2e99-42b5-887e-ad89fd169314/ENCFF837SVG.fastq.gz ENCFF557IJC fastq fastq reads ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF698BKU/ 1848065686 Bradley Bernstein, Broad 962822a56084bf6b2f91c472c8da980f SRA:SRR5338700 https://www.encodeproject.org/files/ENCFF557IJC/@@download/ENCFF557IJC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/a0670767-a432-49b7-9532-e14601a87287/ENCFF557IJC.fastq.gz ENCFF698BKU fastq fastq reads ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 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GRCh38 archived ENCFF050WDN bam bam alignments hg19 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 /files/ENCFF327EQZ/, /files/ENCFF807MUK/, /files/ENCFF413GTS/, /files/ENCFF279GKI/, /files/ENCFF837SVG/ 4696488658 ENCODE Processing Pipeline 1e2dce8931132aa3759f6638a800f369 https://www.encodeproject.org/files/ENCFF050WDN/@@download/ENCFF050WDN.bam released s3://encode-public/2016/10/12/8dde22da-1f61-4e04-9507-64637f340dfc/ENCFF050WDN.bam ENCODE3 hg19 archived ENCFF446RUP bam bam alignments GRCh38 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF356KJM/, /files/ENCFF758JBV/, /files/ENCFF698BKU/, /files/ENCFF808PAO/, /files/ENCFF557IJC/, /files/ENCFF765UYP/ 9724454903 ENCODE Processing Pipeline 720402c982402c1edadee571413fb1e4 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/human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF279GKI/, /files/ENCFF837SVG/ 2867327444 ENCODE Processing Pipeline df3a120ebcfa5e27d71137ef06e71294 https://www.encodeproject.org/files/ENCFF111MOK/@@download/ENCFF111MOK.bam released s3://encode-public/2017/01/06/f1f522ba-c6e7-479d-8313-05774ac5627f/ENCFF111MOK.bam ENCODE3 hg19 archived ENCFF302QUP bam bam unfiltered alignments GRCh38 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF279GKI/, /files/ENCFF837SVG/ 2875706134 ENCODE Processing Pipeline 0a1923ecd8ece0799ba9e70fd934d921 https://www.encodeproject.org/files/ENCFF302QUP/@@download/ENCFF302QUP.bam released s3://encode-public/2017/01/06/72d420a0-f38e-44a2-8d8d-7060ba0ecb4c/ENCFF302QUP.bam ENCODE3 GRCh38 archived ENCFF161VRK bam bam unfiltered alignments hg19 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 /files/ENCFF557IJC/, /files/ENCFF765UYP/, /files/ENCFF807MUK/, /files/ENCFF356KJM/ 6221516987 ENCODE Processing Pipeline 3979c631182f336e4db2374942727820 https://www.encodeproject.org/files/ENCFF161VRK/@@download/ENCFF161VRK.bam released s3://encode-public/2017/01/06/f10f4e6c-1363-4b9e-9149-14e3f8624468/ENCFF161VRK.bam ENCODE3 hg19 archived ENCFF133LPT bam bam alignments hg19 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF279GKI/, /files/ENCFF837SVG/ 2298811365 ENCODE Processing Pipeline 0e8e0cdbf0f5e9df08744176c5eb8780 https://www.encodeproject.org/files/ENCFF133LPT/@@download/ENCFF133LPT.bam released s3://encode-public/2017/01/06/6284b028-4ec2-42b9-9a3f-a390f1e1dc0c/ENCFF133LPT.bam ENCODE3 hg19 archived ENCFF190IKF bam bam unfiltered alignments GRCh38 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 /files/ENCFF557IJC/, /files/ENCFF765UYP/, /files/ENCFF643CGH/, /files/ENCFF356KJM/ 6247468271 ENCODE Processing Pipeline c69e9bada07fd3d38df7756ab2ed3c38 https://www.encodeproject.org/files/ENCFF190IKF/@@download/ENCFF190IKF.bam released s3://encode-public/2017/01/06/914ca039-c4c6-463e-a3e7-1e355f12c80d/ENCFF190IKF.bam ENCODE3 GRCh38 archived ENCFF457VRT bam bam unfiltered alignments GRCh38 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 /files/ENCFF327EQZ/, /files/ENCFF837SVG/, /files/ENCFF279GKI/, /files/ENCFF413GTS/, /files/ENCFF110MCL/ 5999128070 ENCODE Processing Pipeline 69673d98375dbfe4d3cd4921f37a7b65 https://www.encodeproject.org/files/ENCFF457VRT/@@download/ENCFF457VRT.bam released s3://encode-public/2020/10/21/bde8ec03-7d53-40a0-8999-1e1bc21bdf51/ENCFF457VRT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF489JGD bam bam unfiltered alignments GRCh38 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF765UYP/, /files/ENCFF808PAO/, /files/ENCFF758JBV/, /files/ENCFF698BKU/, /files/ENCFF356KJM/, /files/ENCFF557IJC/ 13039242139 ENCODE Processing Pipeline bf581f1492fe205a83360ff6138eada9 https://www.encodeproject.org/files/ENCFF489JGD/@@download/ENCFF489JGD.bam released s3://encode-public/2020/10/21/c753485b-a015-4d0a-be78-d494763dd0af/ENCFF489JGD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF181CXT bam bam alignments GRCh38 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 1 1_1 76 /files/ENCFF327EQZ/, /files/ENCFF837SVG/, /files/ENCFF279GKI/, /files/ENCFF413GTS/, /files/ENCFF110MCL/ 4804121478 ENCODE Processing Pipeline ffec8961e15783bafb161fb7ab534568 https://www.encodeproject.org/files/ENCFF181CXT/@@download/ENCFF181CXT.bam released s3://encode-public/2020/10/21/9aee9c46-df07-4bc1-93b7-9f91bbc0614b/ENCFF181CXT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF295UVQ bam bam alignments GRCh38 ENCSR409FGC Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2016-10-12 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF765UYP/, /files/ENCFF808PAO/, /files/ENCFF758JBV/, /files/ENCFF698BKU/, /files/ENCFF356KJM/, /files/ENCFF557IJC/ 5807227035 ENCODE Processing Pipeline bbed5cbf6de38a4d66361d32f0360024 https://www.encodeproject.org/files/ENCFF295UVQ/@@download/ENCFF295UVQ.bam released s3://encode-public/2020/10/21/dfaac892-a9ed-4ce0-94cc-4d9bcc25c759/ENCFF295UVQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF948AEP bam bam unfiltered alignments hg19 ENCSR489RLS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3611/'], '@type': ['Target', 'Item'], 'name': 'ILK-human', 'label': 'ILK', '@id': '/targets/ILK-human/', 'title': 'ILK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3772d560-64a7-49e6-ad13-d495f9f6baa6', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF823MCH/, /files/ENCFF807MUK/, /files/ENCFF904LUM/ 6726190983 ENCODE Processing Pipeline c6c337f320dea97ff322fd06cc529dc3 https://www.encodeproject.org/files/ENCFF948AEP/@@download/ENCFF948AEP.bam released s3://encode-public/2018/02/21/49a4cbaf-5a76-4e22-a930-8753b5fd1474/ENCFF948AEP.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF904LUM fastq fastq reads ENCSR489RLS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3611/'], '@type': ['Target', 'Item'], 'name': 'ILK-human', 'label': 'ILK', '@id': '/targets/ILK-human/', 'title': 'ILK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3772d560-64a7-49e6-ad13-d495f9f6baa6', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF823MCH/ 3081582757 Michael Snyder, Stanford c51390a286dd3bb7d848bd5b9dcf5c91 SRA:SRR5111661 https://www.encodeproject.org/files/ENCFF904LUM/@@download/ENCFF904LUM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/2f7986cd-4acf-4afa-a849-012df48346db/ENCFF904LUM.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF823MCH fastq fastq reads ENCSR489RLS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3611/'], '@type': ['Target', 'Item'], 'name': 'ILK-human', 'label': 'ILK', '@id': '/targets/ILK-human/', 'title': 'ILK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3772d560-64a7-49e6-ad13-d495f9f6baa6', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF904LUM/ 3032529084 Michael Snyder, Stanford 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'3772d560-64a7-49e6-ad13-d495f9f6baa6', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF823MCH/, /files/ENCFF807MUK/, /files/ENCFF904LUM/ 5673532670 ENCODE Processing Pipeline 9d94ef4b4a6764816c54aab1bbeea83f https://www.encodeproject.org/files/ENCFF985LZI/@@download/ENCFF985LZI.bam released s3://encode-public/2016/01/15/e607d066-3b13-4f39-8849-3cc8b7719d7d/ENCFF985LZI.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF399UCQ bam bam unfiltered alignments GRCh38 ENCSR489RLS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3611/'], '@type': ['Target', 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ENCFF457DTQ bam bam alignments GRCh38 ENCSR489RLS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3611/'], '@type': ['Target', 'Item'], 'name': 'ILK-human', 'label': 'ILK', '@id': '/targets/ILK-human/', 'title': 'ILK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3772d560-64a7-49e6-ad13-d495f9f6baa6', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 /files/ENCFF904LUM/, /files/ENCFF110MCL/, /files/ENCFF823MCH/ 5593208160 ENCODE Processing Pipeline d79a99e4a4d98c77b686fcc103fcb893 https://www.encodeproject.org/files/ENCFF457DTQ/@@download/ENCFF457DTQ.bam released s3://encode-public/2020/06/13/3b75ee28-8203-440a-bded-f6ad8c25e203/ENCFF457DTQ.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF285EZB fastq fastq reads ENCSR718KRA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1479815427 Richard Myers, HAIB e398ec403746836059acb79589cd4172 SRA:SRR5111992 https://www.encodeproject.org/files/ENCFF285EZB/@@download/ENCFF285EZB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/84de1d79-3ae3-4fcd-a2ca-8c1aa91fecc4/ENCFF285EZB.fastq.gz ENCFF209YOD bam bam unfiltered alignments mm10 ENCSR718KRA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF285EZB/ 1652762895 ENCODE Processing Pipeline c0699df7fea678bad3b53a4d38893f1f https://www.encodeproject.org/files/ENCFF209YOD/@@download/ENCFF209YOD.bam released s3://encode-public/2016/05/20/e2e1f5c9-d82a-4919-9913-aaf4e3fa10dd/ENCFF209YOD.bam ENCODE3 mm10 archived ENCFF251CDJ bam bam alignments mm10 ENCSR718KRA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF285EZB/ 1249232106 ENCODE Processing Pipeline 6106dea486dce9dc87249ca785ca47fd https://www.encodeproject.org/files/ENCFF251CDJ/@@download/ENCFF251CDJ.bam released s3://encode-public/2016/05/20/70e9f9f2-c7b7-4b8e-a89c-4c77c7502c7b/ENCFF251CDJ.bam ENCODE3 mm10 archived ENCFF244UVC bam bam alignments mm10 ENCSR718KRA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF285EZB/, /files/ENCFF309GLL/ 1287129723 ENCODE Processing Pipeline 95b131720a996432592a1d2e3d738df0 https://www.encodeproject.org/files/ENCFF244UVC/@@download/ENCFF244UVC.bam released s3://encode-public/2020/10/08/17ec2509-78d0-49d4-bc59-88067dbb7cf7/ENCFF244UVC.bam ENCODE4 v1.5.1 mm10 released ENCFF704RLK bam bam unfiltered alignments mm10 ENCSR718KRA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF285EZB/, /files/ENCFF309GLL/ 1634424759 ENCODE Processing Pipeline 20db753dd285de7d87d2abeaabf8c3b7 https://www.encodeproject.org/files/ENCFF704RLK/@@download/ENCFF704RLK.bam released s3://encode-public/2020/10/08/19763902-67b4-4f11-8175-d5e3dd7a4cff/ENCFF704RLK.bam ENCODE4 v1.5.1 mm10 released ENCFF461IZI fastq fastq reads ENCSR574GMU Control ChIP-seq /human-donors/ENCDO147FTI/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1690197255 Zhiping Weng, UMass 1292ab9832979519cf1a9d91c0c461f7 SRA:SRR1067069 https://www.encodeproject.org/files/ENCFF461IZI/@@download/ENCFF461IZI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/6b043341-bccf-4a63-ab94-411f4b40104b/ENCFF461IZI.fastq.gz low read length ENCFF856XRP bam bam unfiltered alignments GRCh38 ENCSR574GMU Control ChIP-seq /human-donors/ENCDO147FTI/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF461IZI/ 1977205938 ENCODE Processing Pipeline 75fa5ec0439a504caa0179d6a87191ce https://www.encodeproject.org/files/ENCFF856XRP/@@download/ENCFF856XRP.bam released s3://encode-public/2016/12/19/8260889a-5850-454a-bf56-f14eeff21c7b/ENCFF856XRP.bam ENCODE3 GRCh38 archived low read length ENCFF595TNU bam bam unfiltered alignments hg19 ENCSR574GMU Control ChIP-seq /human-donors/ENCDO147FTI/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF461IZI/ 1968477117 ENCODE Processing Pipeline c53c0e73dfbeae91e6b8479ecc9fcdf8 https://www.encodeproject.org/files/ENCFF595TNU/@@download/ENCFF595TNU.bam released s3://encode-public/2016/12/19/9ea7502b-9182-4d60-98c7-00b0718e2ab9/ENCFF595TNU.bam ENCODE3 hg19 archived low read length ENCFF552EZF bam bam alignments GRCh38 ENCSR574GMU Control ChIP-seq /human-donors/ENCDO147FTI/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF461IZI/ 1429903357 ENCODE Processing Pipeline 11890f3ca8216e65f779d2d930117a86 https://www.encodeproject.org/files/ENCFF552EZF/@@download/ENCFF552EZF.bam released s3://encode-public/2016/12/19/177c15f0-9983-4db3-bf19-48f1534cf915/ENCFF552EZF.bam ENCODE3 GRCh38 archived low read length ENCFF283FOW bam bam alignments hg19 ENCSR574GMU Control ChIP-seq /human-donors/ENCDO147FTI/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 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myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF461IZI/ 1938223273 ENCODE Processing Pipeline 72c1ba7df6a7ac8f04a25b44dcf473c8 https://www.encodeproject.org/files/ENCFF758MPK/@@download/ENCFF758MPK.bam released s3://encode-public/2020/11/13/22ba012b-609c-4339-a607-059915515928/ENCFF758MPK.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF698RZR fastq fastq reads ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO930ZLO/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 1243423935 Zhiping Weng, UMass b2e81ca91178e4c252fe6e1890c005c9 SRA:SRR1067504 https://www.encodeproject.org/files/ENCFF698RZR/@@download/ENCFF698RZR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/22/f372629f-0975-434c-819f-de88e5120502/ENCFF698RZR.fastq.gz low read length ENCFF960NON fastq fastq reads ENCSR253EQJ Control ChIP-seq 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hg19 archived low read length ENCFF564LSD bam bam alignments GRCh38 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO026AEL/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF960NON/ 1169152367 ENCODE Processing Pipeline dc404e962eef8331b58e8f4e5592ec30 https://www.encodeproject.org/files/ENCFF564LSD/@@download/ENCFF564LSD.bam released s3://encode-public/2018/02/01/a8bceb90-d106-4cc7-ada6-f61f1afdb483/ENCFF564LSD.bam ENCODE3 GRCh38 archived low read length ENCFF245UWO bam bam alignments hg19 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO930ZLO/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF698RZR/ 1019006975 ENCODE Processing Pipeline 15ff3ffb5c06198d527b235a991ef951 https://www.encodeproject.org/files/ENCFF245UWO/@@download/ENCFF245UWO.bam released s3://encode-public/2018/02/01/8899fa9f-8b40-4327-a1f9-7dc71b1c5b20/ENCFF245UWO.bam ENCODE3 hg19 archived low read length ENCFF206KXB bam bam alignments GRCh38 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO930ZLO/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF698RZR/ 1018677175 ENCODE Processing Pipeline 670e91ea98f9aeb1138cfa750e00d5c5 https://www.encodeproject.org/files/ENCFF206KXB/@@download/ENCFF206KXB.bam released s3://encode-public/2018/02/01/4df3a72d-e1d3-4cf6-b95c-00a2ebb58625/ENCFF206KXB.bam ENCODE3 GRCh38 archived low read length ENCFF698YSR bam bam unfiltered alignments hg19 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO930ZLO/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF698RZR/ 1447468403 ENCODE Processing Pipeline 52a04898bc1ef10514729cf9f587e8ba https://www.encodeproject.org/files/ENCFF698YSR/@@download/ENCFF698YSR.bam released s3://encode-public/2018/02/01/d5ea15e5-1854-42de-a3fa-dc101233d1a3/ENCFF698YSR.bam ENCODE3 hg19 archived low read length ENCFF810IYD bam bam alignments hg19 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO026AEL/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF960NON/ 1169262265 ENCODE Processing Pipeline 421167c3117a55a630de8643ba6bfb23 https://www.encodeproject.org/files/ENCFF810IYD/@@download/ENCFF810IYD.bam released s3://encode-public/2018/02/01/749fe1f1-bad1-438d-9601-5025972ab04b/ENCFF810IYD.bam ENCODE3 hg19 archived low read length ENCFF758JSD bam bam unfiltered alignments GRCh38 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO026AEL/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF960NON/ 1624560005 ENCODE Processing Pipeline a0b7cbff44460c0f6ae01aa9172f7603 https://www.encodeproject.org/files/ENCFF758JSD/@@download/ENCFF758JSD.bam released s3://encode-public/2018/02/01/01ba773e-7a24-48b4-b289-f81d92732f7f/ENCFF758JSD.bam ENCODE3 GRCh38 archived low read length ENCFF326TJI bam bam unfiltered alignments GRCh38 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO930ZLO/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF698RZR/ 1455807858 ENCODE Processing Pipeline 9a842b33354c7f46e46b041966c4f95b https://www.encodeproject.org/files/ENCFF326TJI/@@download/ENCFF326TJI.bam released s3://encode-public/2018/02/01/b3020fba-8aab-4fe2-bb20-5ac39b1b7ff1/ENCFF326TJI.bam ENCODE3 GRCh38 archived low read length ENCFF977GKS bam bam unfiltered alignments hg19 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO026AEL/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF960NON/ 1613875886 ENCODE Processing Pipeline c7522c09780ffa0b675e153ffff7e150 https://www.encodeproject.org/files/ENCFF977GKS/@@download/ENCFF977GKS.bam released s3://encode-public/2018/02/01/40426855-c5db-49f4-a302-17706a292b60/ENCFF977GKS.bam ENCODE3 hg19 archived low read length ENCFF861UYL bam bam unfiltered alignments GRCh38 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO026AEL/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF960NON/, /files/ENCFF110MCL/ 1585294124 ENCODE Processing Pipeline df9980879dac9328d6a6402aec5d014c https://www.encodeproject.org/files/ENCFF861UYL/@@download/ENCFF861UYL.bam released s3://encode-public/2020/10/08/228eb1c1-fc82-4b5c-96f1-12a42bb60335/ENCFF861UYL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF285NII bam bam unfiltered alignments GRCh38 ENCSR253EQJ Control ChIP-seq /human-donors/ENCDO930ZLO/ CL:0001059 common myeloid 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ChIP-seq /human-donors/ENCDO930ZLO/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF698RZR/, /files/ENCFF110MCL/ 1113146237 ENCODE Processing Pipeline c681b56e90c1b198ea6684b700653072 https://www.encodeproject.org/files/ENCFF069FIG/@@download/ENCFF069FIG.bam released s3://encode-public/2020/10/08/8a725a1a-da6b-44d2-9951-b9c190f6568f/ENCFF069FIG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF747FRP fastq fastq reads ENCSR236UIQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1713958557 Richard Myers, HAIB e09894cf06b2f9a24bfbf429add9d808 SRA:SRR5111332 https://www.encodeproject.org/files/ENCFF747FRP/@@download/ENCFF747FRP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/c8824529-f3e6-4a59-a39f-b196b26370aa/ENCFF747FRP.fastq.gz ENCFF284BYN bam bam unfiltered alignments mm10 ENCSR236UIQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF747FRP/ 1887937626 ENCODE Processing Pipeline c323cb88c77247f10fde6f3897fb0c86 https://www.encodeproject.org/files/ENCFF284BYN/@@download/ENCFF284BYN.bam released s3://encode-public/2016/05/20/f2feea96-a35f-4144-8338-25a12673cdc8/ENCFF284BYN.bam ENCODE3 mm10 archived ENCFF814DMW bam bam alignments mm10 ENCSR236UIQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF747FRP/ 1391040425 ENCODE Processing Pipeline d1177c956a352e3b196903a1234ccf5e https://www.encodeproject.org/files/ENCFF814DMW/@@download/ENCFF814DMW.bam released s3://encode-public/2016/05/20/2cee17ea-b5f0-41a7-8629-8b20a7d368cb/ENCFF814DMW.bam ENCODE3 mm10 archived ENCFF774SMY bam bam unfiltered alignments mm10 ENCSR236UIQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF747FRP/ 1848473387 ENCODE Processing Pipeline 9b16c0afffefe9fa5cddcb37f4c00dce https://www.encodeproject.org/files/ENCFF774SMY/@@download/ENCFF774SMY.bam released s3://encode-public/2020/11/06/99691aa3-446e-46dc-a8ce-9c90de0bf11d/ENCFF774SMY.bam ENCODE4 v1.6.1 mm10 released ENCFF644PQC bam bam alignments mm10 ENCSR236UIQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF747FRP/ 1417593814 ENCODE Processing Pipeline d4f92e2bec08e0feae8dcf20601c7661 https://www.encodeproject.org/files/ENCFF644PQC/@@download/ENCFF644PQC.bam released s3://encode-public/2020/11/06/31ea1225-ad93-468e-bc1d-131081780d25/ENCFF644PQC.bam ENCODE4 v1.6.1 mm10 released ENCFF825XKT fastq fastq reads ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 638052757 Zhiping Weng, UMass 3b86f56891c2700f5532caadc08a5073 SRA:SRR787513 https://www.encodeproject.org/files/ENCFF825XKT/@@download/ENCFF825XKT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/25/da2d81f0-6c2c-4525-9019-761b2d0a03fc/ENCFF825XKT.fastq.gz low read length ENCFF536TAF fastq fastq reads ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 371816349 Zhiping Weng, UMass ec4de8aa2506bf17f7094dba2cec9967 SRA:SRR787514 https://www.encodeproject.org/files/ENCFF536TAF/@@download/ENCFF536TAF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/25/af281cd5-fad8-4094-b8e5-bdaaaa475411/ENCFF536TAF.fastq.gz low read length ENCFF256ITC bam bam unfiltered alignments hg19 ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 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ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF825XKT/, /files/ENCFF536TAF/ 845092291 ENCODE Processing Pipeline a1d1f64702dfeea9750268cbe8509b6e https://www.encodeproject.org/files/ENCFF966NZX/@@download/ENCFF966NZX.bam released s3://encode-public/2016/12/19/c09443ad-2ed5-4e37-8eb7-aea868a29f4f/ENCFF966NZX.bam ENCODE3 hg19 archived low read length ENCFF945TJC bam bam alignments GRCh38 ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF825XKT/, /files/ENCFF536TAF/ 845071507 ENCODE Processing Pipeline e47d5b96efd91fc495a59e037f8ff0ce https://www.encodeproject.org/files/ENCFF945TJC/@@download/ENCFF945TJC.bam released s3://encode-public/2016/12/19/232f9f7f-e992-4f7c-b620-10f69b27993f/ENCFF945TJC.bam ENCODE3 GRCh38 archived low read length ENCFF386ZEH tagAlign tagAlign alignments hg19 ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF536TAF/, /files/ENCFF825XKT/ 142349456 Anshul Kundaje, Stanford 5677c8009c245e14d5e5c46850b7d5f5 https://www.encodeproject.org/files/ENCFF386ZEH/@@download/ENCFF386ZEH.tagAlign.gz archived s3://encode-public/2016/02/11/f89b7868-059b-48db-a3b4-7ce7dd44b262/ENCFF386ZEH.tagAlign.gz Lab custom hg19 archived low read length ENCFF328STD bam bam alignments GRCh38 ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF825XKT/, /files/ENCFF536TAF/ 931506983 ENCODE Processing Pipeline 55743aeab4b9a3d27e1167fc08c7c672 https://www.encodeproject.org/files/ENCFF328STD/@@download/ENCFF328STD.bam released s3://encode-public/2020/10/08/11f1091d-dc9c-4836-932c-748cabb060af/ENCFF328STD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF890VUF bam bam unfiltered alignments GRCh38 ENCSR444GJM Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF825XKT/, /files/ENCFF536TAF/ 1243259018 ENCODE Processing Pipeline ffba1db7621f110251488aec43972f8c https://www.encodeproject.org/files/ENCFF890VUF/@@download/ENCFF890VUF.bam released s3://encode-public/2020/10/08/6ac8fe94-2ef3-464f-b137-162dfdc62091/ENCFF890VUF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF570EFV fastq fastq reads ENCSR937YBQ Control ChIP-seq /worm-donors/ENCDO147KSU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183457/'], '@type': ['Target', 'Item'], 'name': 'hnd-1-celegans', 'label': 'hnd-1', '@id': '/targets/hnd-1-celegans/', 'title': 'hnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '40bbb7a5-b657-42a4-8085-66fb8012ca6c', 'status': 'released'} ce11 X 11664914 11698412 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1264506790 Kevin White, UChicago 84ed4ee8e1d2c9932ea5a84f146d9ac5 https://www.encodeproject.org/files/ENCFF570EFV/@@download/ENCFF570EFV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/04/c219f4ae-1a46-4c3b-8994-b503f428f106/ENCFF570EFV.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF949ZZH bam bam alignments ce10 ENCSR937YBQ Control ChIP-seq /worm-donors/ENCDO147KSU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183457/'], '@type': ['Target', 'Item'], 'name': 'hnd-1-celegans', 'label': 'hnd-1', '@id': '/targets/hnd-1-celegans/', 'title': 'hnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '40bbb7a5-b657-42a4-8085-66fb8012ca6c', 'status': 'released'} ce11 X 11664914 11698412 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF570EFV/, /files/ENCFF987UMF/ 1494265644 Kevin White, UChicago 51d0523ff8765fb216bfa10b264c17e2 https://www.encodeproject.org/files/ENCFF949ZZH/@@download/ENCFF949ZZH.bam released s3://encode-public/2016/10/04/faea6dc5-ffa0-4ae1-a19e-41488b563b2e/ENCFF949ZZH.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF640TOJ bam bam alignments ce11 ENCSR937YBQ Control ChIP-seq /worm-donors/ENCDO147KSU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183457/'], '@type': ['Target', 'Item'], 'name': 'hnd-1-celegans', 'label': 'hnd-1', '@id': '/targets/hnd-1-celegans/', 'title': 'hnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '40bbb7a5-b657-42a4-8085-66fb8012ca6c', 'status': 'released'} ce11 X 11664914 11698412 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF570EFV/, /files/ENCFF586MOL/ 1495538834 Kevin White, UChicago 4ccd49eaed298814833986201ce211c9 https://www.encodeproject.org/files/ENCFF640TOJ/@@download/ENCFF640TOJ.bam released s3://encode-public/2016/10/05/7bd24d9b-90d1-4c95-bfaa-160c2df22c41/ENCFF640TOJ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF911DNN bigWig bigWig read-depth normalized signal ce10 ENCSR937YBQ Control ChIP-seq /worm-donors/ENCDO147KSU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183457/'], '@type': ['Target', 'Item'], 'name': 'hnd-1-celegans', 'label': 'hnd-1', '@id': '/targets/hnd-1-celegans/', 'title': 'hnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '40bbb7a5-b657-42a4-8085-66fb8012ca6c', 'status': 'released'} ce11 X 11664914 11698412 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF949ZZH/ 9932339 Kevin White, UChicago 2e2543844d1998eb3f31c4eba458f580 https://www.encodeproject.org/files/ENCFF911DNN/@@download/ENCFF911DNN.bigWig released s3://encode-public/2016/10/06/0307328d-d81c-4e37-826f-3fa4101b776f/ENCFF911DNN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF080UJY bigWig bigWig signal of unique reads ce10 ENCSR937YBQ Control ChIP-seq /worm-donors/ENCDO147KSU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183457/'], '@type': ['Target', 'Item'], 'name': 'hnd-1-celegans', 'label': 'hnd-1', '@id': '/targets/hnd-1-celegans/', 'title': 'hnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '40bbb7a5-b657-42a4-8085-66fb8012ca6c', 'status': 'released'} ce11 X 11664914 11698412 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF949ZZH/ 9993402 Kevin White, UChicago fe74d79491ef2a22a1808e966e4622ba https://www.encodeproject.org/files/ENCFF080UJY/@@download/ENCFF080UJY.bigWig released s3://encode-public/2016/10/06/ade1e9cf-dc13-4445-9f8a-e46466e00f6d/ENCFF080UJY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF629XCF bigWig bigWig read-depth normalized signal ce11 ENCSR937YBQ Control ChIP-seq /worm-donors/ENCDO147KSU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183457/'], '@type': ['Target', 'Item'], 'name': 'hnd-1-celegans', 'label': 'hnd-1', '@id': '/targets/hnd-1-celegans/', 'title': 'hnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '40bbb7a5-b657-42a4-8085-66fb8012ca6c', 'status': 'released'} ce11 X 11664914 11698412 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF640TOJ/ 9932331 Kevin White, UChicago d0878ffc5a6c4db0f0d2d2beb841e810 https://www.encodeproject.org/files/ENCFF629XCF/@@download/ENCFF629XCF.bigWig released s3://encode-public/2016/10/06/57fcd871-d1a6-46b3-97e3-956e755971bc/ENCFF629XCF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF149CVF bigWig bigWig signal of unique reads ce11 ENCSR937YBQ Control ChIP-seq /worm-donors/ENCDO147KSU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183457/'], '@type': ['Target', 'Item'], 'name': 'hnd-1-celegans', 'label': 'hnd-1', '@id': '/targets/hnd-1-celegans/', 'title': 'hnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '40bbb7a5-b657-42a4-8085-66fb8012ca6c', 'status': 'released'} ce11 X 11664914 11698412 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF640TOJ/ 9993407 Kevin White, UChicago 6b9d88c8325b5ce33b352060eab2cdd7 https://www.encodeproject.org/files/ENCFF149CVF/@@download/ENCFF149CVF.bigWig released s3://encode-public/2016/10/06/e9f3c8ee-72e3-4bfa-998d-96aa802727eb/ENCFF149CVF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF248WSC tagAlign tagAlign alignments hg19 ENCSR648VOG Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF708SNY/ 294576546 Anshul Kundaje, Stanford b152f946c073ed534e20b68590ff0276 https://www.encodeproject.org/files/ENCFF248WSC/@@download/ENCFF248WSC.tagAlign.gz archived s3://encode-public/2016/05/02/3b485bf4-77ce-462b-812e-1021892267bf/ENCFF248WSC.tagAlign.gz Lab custom hg19 archived low read length ENCFF807GKV bam bam unfiltered alignments GRCh38 ENCSR648VOG Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF708SNY/, /files/ENCFF110MCL/ 3029255326 ENCODE Processing Pipeline c27d90f18c23727ddda275838edbf6bd https://www.encodeproject.org/files/ENCFF807GKV/@@download/ENCFF807GKV.bam released s3://encode-public/2020/10/09/31f5aa12-4025-47a5-87e2-d83b03ab1535/ENCFF807GKV.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF708SNY fastq fastq reads ENCSR648VOG Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000351 trophoblast cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2551557522 Zhiping Weng, UMass 86ae28aca49e61cb777eeae0efaa3ceb SRA:SRR304972 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/files/ENCFF631YST/ 45209731 Anshul Kundaje, Stanford 5ee2a897a8be5895b81555c63329a88a https://www.encodeproject.org/files/ENCFF477HIN/@@download/ENCFF477HIN.tagAlign.gz archived s3://encode-public/2016/03/30/9e501246-8afd-4b63-8e4e-9a0629418e7f/ENCFF477HIN.tagAlign.gz Lab custom hg19 archived low read length insufficient read depth ENCFF631YST fastq fastq reads ENCSR086NVH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 323534220 Zhiping Weng, UMass 1bf854e0b6001eeab65a5e9aa80e0351 SRA:SRR305033 https://www.encodeproject.org/files/ENCFF631YST/@@download/ENCFF631YST.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/19/80190b0c-f4b2-4beb-b4b7-ffc17830daab/ENCFF631YST.fastq.gz low read length insufficient read depth ENCFF059YAM bam bam alignments GRCh38 ENCSR086NVH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF631YST/ 255670195 ENCODE Processing Pipeline 66644b97a87e5efa54b12b627ad8c63e https://www.encodeproject.org/files/ENCFF059YAM/@@download/ENCFF059YAM.bam released s3://encode-public/2020/10/08/3353a868-c462-4c69-9ad9-73c206af64d1/ENCFF059YAM.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF547JBD bam bam unfiltered alignments GRCh38 ENCSR086NVH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF631YST/, /files/ENCFF643CGH/ 406627036 ENCODE Processing Pipeline c62fd571a8958ecd3ba06e1dc9ad77ac https://www.encodeproject.org/files/ENCFF547JBD/@@download/ENCFF547JBD.bam released s3://encode-public/2016/12/19/8573f077-1ac4-4e0b-961f-3ecd7be04161/ENCFF547JBD.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF767LCW bam bam unfiltered alignments hg19 ENCSR086NVH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF631YST/, /files/ENCFF807MUK/ 405074052 ENCODE Processing Pipeline cd8b41911f80cbd420368a8e4cdedf62 https://www.encodeproject.org/files/ENCFF767LCW/@@download/ENCFF767LCW.bam released s3://encode-public/2016/12/19/52920afe-e7a5-4b58-a705-8f08bd30b8d3/ENCFF767LCW.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF363MTI bam bam alignments GRCh38 ENCSR086NVH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF631YST/, /files/ENCFF643CGH/ 227279843 ENCODE Processing Pipeline c11f26d12e08bc35333680dfc5a0c792 https://www.encodeproject.org/files/ENCFF363MTI/@@download/ENCFF363MTI.bam released s3://encode-public/2016/12/19/1d934396-b8dc-4392-ae54-ce18b9b28a4b/ENCFF363MTI.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF587HLU bam bam alignments hg19 ENCSR086NVH Control ChIP-seq 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released ENCFF171TMI bam bam unfiltered alignments GRCh38 ENCSR872BBM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF039RED/, /files/ENCFF110MCL/ 762452180 ENCODE Processing Pipeline 1a4ef200ccd2b601bbc159855a60f416 https://www.encodeproject.org/files/ENCFF171TMI/@@download/ENCFF171TMI.bam released s3://encode-public/2020/09/29/f30834d2-9124-4fb2-8cee-c5d1c3838970/ENCFF171TMI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF392SLA bam bam unfiltered alignments GRCh38 ENCSR872BBM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF496CXR/ 908708605 ENCODE Processing Pipeline d3f708bd80e66d2c76b74e50fbed4d5b https://www.encodeproject.org/files/ENCFF392SLA/@@download/ENCFF392SLA.bam released s3://encode-public/2020/09/29/76c58bfd-140e-402d-b3c9-e4025d337093/ENCFF392SLA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF851IJL bam bam alignments GRCh38 ENCSR872BBM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF496CXR/ 764401864 ENCODE Processing Pipeline 7b1d80590628aeb97c9105233e58dbe7 https://www.encodeproject.org/files/ENCFF851IJL/@@download/ENCFF851IJL.bam released s3://encode-public/2020/09/29/a80cbbb1-8e3b-4ba4-bf77-82430e20a1a4/ENCFF851IJL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF130DSK fastq fastq reads ENCSR923VFC Control ChIP-seq /fly-donors/ENCDO744PIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 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ENCSR923VFC Control ChIP-seq /fly-donors/ENCDO744PIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31737/'], '@type': ['Target', 'Item'], 'name': 'CG2120-dmelanogaster', 'label': 'CG2120', '@id': '/targets/CG2120-dmelanogaster/', 'title': 'CG2120 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c32f7928-4423-484f-adea-9fdfe946c7fd', 'status': 'released'} dm3 X 8020909 8042468 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF328WTX/ 15297855 Kevin White, UChicago 2500a925659a8cbdcd8da07b076ab22a https://www.encodeproject.org/files/ENCFF481FZV/@@download/ENCFF481FZV.bigWig released s3://encode-public/2015/10/21/20266521-c4e0-4e6f-9daa-a05dbdd9e48c/ENCFF481FZV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF328WTX bam bam alignments dm3 ENCSR923VFC Control ChIP-seq /fly-donors/ENCDO744PIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31737/'], '@type': ['Target', 'Item'], 'name': 'CG2120-dmelanogaster', 'label': 'CG2120', '@id': '/targets/CG2120-dmelanogaster/', 'title': 'CG2120 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c32f7928-4423-484f-adea-9fdfe946c7fd', 'status': 'released'} dm3 X 8020909 8042468 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF130DSK/ 643728101 Kevin White, UChicago 65596905cbb038df636296bc82ae8dc9 https://www.encodeproject.org/files/ENCFF328WTX/@@download/ENCFF328WTX.bam released s3://encode-public/2015/10/21/b3f3bdac-754b-4295-876c-0add60647130/ENCFF328WTX.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF637MBN bigWig bigWig signal of unique reads dm3 ENCSR923VFC Control ChIP-seq /fly-donors/ENCDO744PIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31737/'], '@type': ['Target', 'Item'], 'name': 'CG2120-dmelanogaster', 'label': 'CG2120', '@id': '/targets/CG2120-dmelanogaster/', 'title': 'CG2120 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c32f7928-4423-484f-adea-9fdfe946c7fd', 'status': 'released'} dm3 X 8020909 8042468 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF328WTX/ 15357466 Kevin White, UChicago a4f0f6a00afe6cc4f6d256e9117ddb68 https://www.encodeproject.org/files/ENCFF637MBN/@@download/ENCFF637MBN.bigWig released s3://encode-public/2015/10/21/ecad7ca0-3e8c-4669-8dc6-84af345bcbdf/ENCFF637MBN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF257NLP bam bam alignments dm6 ENCSR923VFC Control ChIP-seq /fly-donors/ENCDO744PIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31737/'], '@type': ['Target', 'Item'], 'name': 'CG2120-dmelanogaster', 'label': 'CG2120', '@id': '/targets/CG2120-dmelanogaster/', 'title': 'CG2120 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c32f7928-4423-484f-adea-9fdfe946c7fd', 'status': 'released'} dm3 X 8020909 8042468 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF130DSK/ 642228162 Kevin White, UChicago 92e3a16d7cbc9d4aff05169d4d791569 https://www.encodeproject.org/files/ENCFF257NLP/@@download/ENCFF257NLP.bam released s3://encode-public/2016/04/21/bb5e32ee-b407-4b1f-8f5c-07fbe5483ef5/ENCFF257NLP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF959FFB bigWig bigWig read-depth normalized signal dm6 ENCSR923VFC Control ChIP-seq /fly-donors/ENCDO744PIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31737/'], '@type': ['Target', 'Item'], 'name': 'CG2120-dmelanogaster', 'label': 'CG2120', '@id': '/targets/CG2120-dmelanogaster/', 'title': 'CG2120 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c32f7928-4423-484f-adea-9fdfe946c7fd', 'status': 'released'} dm3 X 8020909 8042468 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF257NLP/ 17387761 Kevin White, UChicago 4d6230bf446e4dd8239851fe429d00aa https://www.encodeproject.org/files/ENCFF959FFB/@@download/ENCFF959FFB.bigWig released s3://encode-public/2016/06/21/cdf025d8-d5f9-4e3e-a284-13141a4018cc/ENCFF959FFB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF027BVJ bigWig bigWig signal of unique reads dm6 ENCSR923VFC Control ChIP-seq /fly-donors/ENCDO744PIV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31737/'], '@type': ['Target', 'Item'], 'name': 'CG2120-dmelanogaster', 'label': 'CG2120', '@id': '/targets/CG2120-dmelanogaster/', 'title': 'CG2120 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c32f7928-4423-484f-adea-9fdfe946c7fd', 'status': 'released'} dm3 X 8020909 8042468 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF257NLP/ 17477097 Kevin White, UChicago 438b96e2ad4c96c6aa851821ad00bd1a https://www.encodeproject.org/files/ENCFF027BVJ/@@download/ENCFF027BVJ.bigWig released s3://encode-public/2016/06/21/45400d01-9a74-454e-be62-d59cc0c0e41f/ENCFF027BVJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF185ATC bam bam unfiltered alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF526AVE/, /files/ENCFF110MCL/ 764484701 ENCODE Processing Pipeline 025617c693fbf186ea54b59bdde750e4 https://www.encodeproject.org/files/ENCFF185ATC/@@download/ENCFF185ATC.bam released s3://encode-public/2020/09/29/62a51be1-8dc5-4e67-848f-87f2647a0258/ENCFF185ATC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF335YKL bam bam alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF047IPB/, /files/ENCFF110MCL/ 897038886 ENCODE Processing Pipeline 8a948b135281a53c6ecef6f35c5e40ed https://www.encodeproject.org/files/ENCFF335YKL/@@download/ENCFF335YKL.bam released s3://encode-public/2020/09/29/1f748508-81a2-4c1b-80d4-b51d26802dd9/ENCFF335YKL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF081NZK fastq fastq reads ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 662826934 Tim Reddy, Duke 245fd5dfc054626a761e5f035f08a526 SRA:SRR5093378 https://www.encodeproject.org/files/ENCFF081NZK/@@download/ENCFF081NZK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/2b31a5b4-f633-4d14-b549-4622e73cdf96/ENCFF081NZK.fastq.gz ENCFF047IPB fastq fastq reads ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 839431263 Tim Reddy, Duke 65ce59e74339a4b8cd2856a75882ad1c SRA:SRR5093376 https://www.encodeproject.org/files/ENCFF047IPB/@@download/ENCFF047IPB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/cf2aa30e-71d2-4a92-84d3-e3df2fc454e0/ENCFF047IPB.fastq.gz ENCFF526AVE fastq fastq reads ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 551814901 Tim Reddy, Duke ad35db45cca324ca05342d7cc4a83c2b SRA:SRR5093377 https://www.encodeproject.org/files/ENCFF526AVE/@@download/ENCFF526AVE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/d128d99c-9198-48f5-b333-5f7d7ceafae7/ENCFF526AVE.fastq.gz ENCFF821WGA bam bam alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF081NZK/ 738916657 Tim Reddy, Duke 118bba40da762a08090ecd236bf1f34f https://www.encodeproject.org/files/ENCFF821WGA/@@download/ENCFF821WGA.bam released s3://encode-public/2016/05/31/e731ed79-af94-44d4-b52c-1aac302029c3/ENCFF821WGA.bam Lab custom GRCh38 archived ENCFF544LRR bam bam alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF526AVE/ 609845179 Tim Reddy, Duke 2b4c318d4fbcb7f9ec670f159585eae6 https://www.encodeproject.org/files/ENCFF544LRR/@@download/ENCFF544LRR.bam released s3://encode-public/2016/05/31/13f7f802-e0e7-467c-8192-f5ce4a12516d/ENCFF544LRR.bam Lab custom GRCh38 archived ENCFF321UZO bam bam alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF047IPB/ 857355859 Tim Reddy, Duke b2bbff929acc9f8f6f9caf64c5930623 https://www.encodeproject.org/files/ENCFF321UZO/@@download/ENCFF321UZO.bam released s3://encode-public/2016/05/31/c29a294d-ab88-4700-b060-3f6ea7bdb49f/ENCFF321UZO.bam Lab custom GRCh38 archived ENCFF102TWS bam bam unfiltered alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF047IPB/, /files/ENCFF110MCL/ 1112531043 ENCODE Processing Pipeline b5f1f540868df1c73da5283b1e9bc5d8 https://www.encodeproject.org/files/ENCFF102TWS/@@download/ENCFF102TWS.bam released s3://encode-public/2020/09/29/f919f2cb-ab41-493f-8165-4fa4ac0de38c/ENCFF102TWS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF465DKS bam bam unfiltered alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF081NZK/ 907748121 ENCODE Processing Pipeline ab179052606d89c96ba3a269db26c715 https://www.encodeproject.org/files/ENCFF465DKS/@@download/ENCFF465DKS.bam released s3://encode-public/2020/09/29/30d12887-75cf-421c-9060-b0da36ab9ad0/ENCFF465DKS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF048ADC bam bam alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF526AVE/, /files/ENCFF110MCL/ 636325972 ENCODE Processing Pipeline f9c486f0ba2dd707712110535c75700c https://www.encodeproject.org/files/ENCFF048ADC/@@download/ENCFF048ADC.bam released s3://encode-public/2020/09/29/ef995ce2-39e0-466b-a2b7-068a7cdf92df/ENCFF048ADC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF548NAW bam bam alignments GRCh38 ENCSR274VPI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF081NZK/ 771807974 ENCODE Processing Pipeline 353263aa10ce4423eaf5e0c5d5651bb6 https://www.encodeproject.org/files/ENCFF548NAW/@@download/ENCFF548NAW.bam released s3://encode-public/2020/09/29/65d7fdf6-c901-4afc-960e-638293261b70/ENCFF548NAW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF252ODQ fastq fastq reads ENCSR511ZEC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-19 modENCODE >200 1 1_1 44 single-ended 929746441 Kevin White, UChicago 3afb0498dee3f64f33ca26d632ba5d07 https://www.encodeproject.org/files/ENCFF252ODQ/@@download/ENCFF252ODQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/16/d23990f3-a0ba-4b39-9efb-54baa7589371/ENCFF252ODQ.fastq.gz ENCFF395KVD bam bam alignments dm3 ENCSR511ZEC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-19 modENCODE >200 1 1_1 44 /files/ENCFF252ODQ/, /files/ENCFF059UHX/ 1176233799 Kevin White, UChicago caa76bcfc7db963c660fe9ceaf5d0424 https://www.encodeproject.org/files/ENCFF395KVD/@@download/ENCFF395KVD.bam released s3://encode-public/2017/12/18/5489ba88-18ba-4175-b497-5f28fb3672b8/ENCFF395KVD.bam Lab custom dm3 archived ENCFF317VRM bam bam alignments dm6 ENCSR511ZEC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-19 modENCODE >200 1 1_1 44 /files/ENCFF252ODQ/, /files/ENCFF479RCH/ 1157709730 Kevin White, UChicago 38aba52b4913eb4c35b3b6da3283b850 https://www.encodeproject.org/files/ENCFF317VRM/@@download/ENCFF317VRM.bam released s3://encode-public/2017/12/18/fb7b42af-0cb1-4d1b-a1db-aa1afff82ece/ENCFF317VRM.bam Lab custom dm6 released ENCFF573MLM bigWig bigWig signal of unique reads dm6 ENCSR511ZEC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-19 modENCODE >200 1 1_1 /files/ENCFF317VRM/ 17572013 Kevin White, UChicago 7647845e03c3f724ba80954ccfd5f287 https://www.encodeproject.org/files/ENCFF573MLM/@@download/ENCFF573MLM.bigWig released s3://encode-public/2017/12/18/467d1b9a-4fb2-42b7-9792-0b3b3df04a47/ENCFF573MLM.bigWig Lab custom dm6 released ENCFF429HFV bigWig bigWig read-depth normalized signal dm6 ENCSR511ZEC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-19 modENCODE >200 1 1_1 /files/ENCFF317VRM/ 17570361 Kevin White, UChicago b080d201f26ab746812029beb1e04b69 https://www.encodeproject.org/files/ENCFF429HFV/@@download/ENCFF429HFV.bigWig released s3://encode-public/2017/12/18/8cf2c515-9f5e-4b9a-99db-19a0be21a93a/ENCFF429HFV.bigWig Lab custom dm6 released ENCFF490LUD bigWig bigWig read-depth normalized signal dm3 ENCSR511ZEC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-19 modENCODE >200 1 1_1 /files/ENCFF395KVD/ 15491980 Kevin White, UChicago 16dff5de93ed620962801a09b0231315 https://www.encodeproject.org/files/ENCFF490LUD/@@download/ENCFF490LUD.bigWig released s3://encode-public/2017/12/18/d77f1082-e8ca-427c-919b-d9cd40680da3/ENCFF490LUD.bigWig Lab custom dm3 archived ENCFF616SBJ bigWig bigWig signal of unique reads dm3 ENCSR511ZEC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-12-19 modENCODE >200 1 1_1 /files/ENCFF395KVD/ 15494977 Kevin White, UChicago 7ca25027f1d311b6ea04924a9ff8f5cf https://www.encodeproject.org/files/ENCFF616SBJ/@@download/ENCFF616SBJ.bigWig released s3://encode-public/2017/12/18/6a5c2a12-85e2-4db2-aa64-4dd0d464f6c2/ENCFF616SBJ.bigWig Lab custom dm3 archived ENCFF629MZD bam bam alignments ce11 ENCSR376RRP Control ChIP-seq /worm-donors/ENCDO093NTY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177749/'], '@type': ['Target', 'Item'], 'name': 'flh-1-celegans', 'label': 'flh-1', '@id': '/targets/flh-1-celegans/', 'title': 'flh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'c2d1b74a-89fd-4f87-95dc-f9a1e2a259c1', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF599OIN/, /files/ENCFF586MOL/ 982291004 Kevin White, UChicago b88321b48a14eb1bf63c69e56d84096d https://www.encodeproject.org/files/ENCFF629MZD/@@download/ENCFF629MZD.bam released s3://encode-public/2018/02/28/4afed4e6-02a6-4822-8482-924700216c18/ENCFF629MZD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF599OIN fastq fastq reads ENCSR376RRP Control ChIP-seq /worm-donors/ENCDO093NTY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177749/'], '@type': ['Target', 'Item'], 'name': 'flh-1-celegans', 'label': 'flh-1', '@id': '/targets/flh-1-celegans/', 'title': 'flh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'c2d1b74a-89fd-4f87-95dc-f9a1e2a259c1', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 751398266 Kevin White, UChicago 1f56ddce9e1ff129376f0393b6e5c97d https://www.encodeproject.org/files/ENCFF599OIN/@@download/ENCFF599OIN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/8b770842-4338-488e-845c-4dfeb0262cc7/ENCFF599OIN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF071REZ bigWig bigWig signal of unique reads ce11 ENCSR376RRP Control ChIP-seq /worm-donors/ENCDO093NTY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177749/'], '@type': ['Target', 'Item'], 'name': 'flh-1-celegans', 'label': 'flh-1', '@id': '/targets/flh-1-celegans/', 'title': 'flh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'c2d1b74a-89fd-4f87-95dc-f9a1e2a259c1', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF629MZD/ 9943686 Kevin White, UChicago 45c4b77ea8566aa2cc35dcfe2aa60c1d https://www.encodeproject.org/files/ENCFF071REZ/@@download/ENCFF071REZ.bigWig released s3://encode-public/2018/03/01/dc9861e4-f796-4011-a62e-bfe0e0222318/ENCFF071REZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF634BTO bigWig bigWig read-depth normalized signal ce11 ENCSR376RRP Control ChIP-seq /worm-donors/ENCDO093NTY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177749/'], '@type': ['Target', 'Item'], 'name': 'flh-1-celegans', 'label': 'flh-1', '@id': '/targets/flh-1-celegans/', 'title': 'flh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'c2d1b74a-89fd-4f87-95dc-f9a1e2a259c1', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF629MZD/ 10011942 Kevin White, UChicago 9fc7992e996db2e3e4d991acc22644d8 https://www.encodeproject.org/files/ENCFF634BTO/@@download/ENCFF634BTO.bigWig released s3://encode-public/2018/03/01/b8a8c817-12d8-4a0e-9973-4e53e482749d/ENCFF634BTO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF339NVG fastq fastq reads ENCSR118ZXA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 single-ended 929648690 Kevin White, UChicago ae6fb10225ac41dfbd131f9cc30d2835 https://www.encodeproject.org/files/ENCFF339NVG/@@download/ENCFF339NVG.fastq.gz Illumina Genome Analyzer /files/ENCFF997XZW/ released s3://encode-public/2017/12/22/32acf1ac-b424-4c67-973f-0eec6b1fcbbd/ENCFF339NVG.fastq.gz ENCFF829TBG bam bam alignments dm3 ENCSR118ZXA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF339NVG/, /files/ENCFF059UHX/ 1010123223 Kevin White, UChicago 303b40e767d32e96349ef9d04c416f3d https://www.encodeproject.org/files/ENCFF829TBG/@@download/ENCFF829TBG.bam released s3://encode-public/2017/12/22/1fc03097-54ed-4cf1-a780-9f808181a739/ENCFF829TBG.bam Lab custom dm3 archived ENCFF581FZS bam bam alignments dm6 ENCSR118ZXA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF339NVG/, /files/ENCFF479RCH/ 992151378 Kevin White, UChicago 345d7249eaf4c7a4f1a770be80a41cd8 https://www.encodeproject.org/files/ENCFF581FZS/@@download/ENCFF581FZS.bam released s3://encode-public/2017/12/24/41c51fdb-d1f0-4683-8d04-699e776eb0ef/ENCFF581FZS.bam Lab custom dm6 released ENCFF838DLC bigWig bigWig read-depth normalized signal dm3 ENCSR118ZXA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF829TBG/ 15405222 Kevin White, UChicago 6c5e201ca8b1f2db1c8694fe12d3d038 https://www.encodeproject.org/files/ENCFF838DLC/@@download/ENCFF838DLC.bigWig released s3://encode-public/2017/12/28/6d443a4c-cac6-429b-849f-7f9704a68fe4/ENCFF838DLC.bigWig Lab custom dm3 archived ENCFF870AEX bigWig bigWig signal of unique reads dm6 ENCSR118ZXA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF581FZS/ 17580791 Kevin White, UChicago 62c09fe474746911adf60fc4fdec0de0 https://www.encodeproject.org/files/ENCFF870AEX/@@download/ENCFF870AEX.bigWig released s3://encode-public/2017/12/28/2f512eed-c63c-4e63-956a-1accefc926d1/ENCFF870AEX.bigWig Lab custom dm6 released ENCFF547LOY bigWig bigWig signal of unique reads dm3 ENCSR118ZXA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF829TBG/ 15400657 Kevin White, UChicago fe28f10e018be946ff8ad5e638b34292 https://www.encodeproject.org/files/ENCFF547LOY/@@download/ENCFF547LOY.bigWig released s3://encode-public/2017/12/28/3b974bb2-e19e-4c47-88c8-621f882630cc/ENCFF547LOY.bigWig Lab custom dm3 archived ENCFF030MCZ bigWig bigWig read-depth normalized signal dm6 ENCSR118ZXA Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF581FZS/ 17589714 Kevin White, UChicago 87d89f46a1bb9a2008b723bec02abfa4 https://www.encodeproject.org/files/ENCFF030MCZ/@@download/ENCFF030MCZ.bigWig released s3://encode-public/2017/12/28/35bc4c7e-aa73-419d-8596-fac97bf415ab/ENCFF030MCZ.bigWig Lab custom dm6 released ENCFF217EHH fastq fastq reads ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 2 2_1 50 single-ended 944863166 Kevin White, UChicago c7c92e81a851193f096613ab577d0dd1 https://www.encodeproject.org/files/ENCFF217EHH/@@download/ENCFF217EHH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/09/f9fb152a-0ca1-493c-a051-cd2d6b6aefc1/ENCFF217EHH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF135WTQ fastq fastq reads ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 333417242 Kevin White, UChicago 82109251ebb29e27cdbfbbcb72619575 https://www.encodeproject.org/files/ENCFF135WTQ/@@download/ENCFF135WTQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/09/db31fd5a-eb11-46d6-8aa4-010b0931537c/ENCFF135WTQ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF814CUP bam bam alignments ce10 ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 1, 2 1_1, 2_1 49 /files/ENCFF987UMF/, /files/ENCFF217EHH/, /files/ENCFF135WTQ/ 479994240 Kevin White, UChicago ba8af0516be46b6e736cd617133a1d6d https://www.encodeproject.org/files/ENCFF814CUP/@@download/ENCFF814CUP.bam released s3://encode-public/2016/05/10/60955478-88f7-49b0-9825-f6fc3e9bc759/ENCFF814CUP.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF808CWZ bam bam alignments ce11 ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 1, 2 1_1, 2_1 49 /files/ENCFF586MOL/, /files/ENCFF217EHH/, /files/ENCFF135WTQ/ 480386135 Kevin White, UChicago ef1d9c3e26bbe0b5867dc17729297590 https://www.encodeproject.org/files/ENCFF808CWZ/@@download/ENCFF808CWZ.bam released s3://encode-public/2016/05/10/bfada666-119f-4d9d-a998-02dc20828e13/ENCFF808CWZ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF880GKJ bigWig bigWig signal of unique reads ce10 ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF814CUP/ 10033188 Kevin White, UChicago e9ecff7443d46485262bfa1374b02c86 https://www.encodeproject.org/files/ENCFF880GKJ/@@download/ENCFF880GKJ.bigWig released s3://encode-public/2016/05/11/d4abf449-8257-4a28-9cb0-da7ea1fbfc82/ENCFF880GKJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF695ZFT bigWig bigWig read-depth normalized signal ce10 ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF814CUP/ 9972531 Kevin White, UChicago 29e5dafbc361a8097f2f244d9b823d17 https://www.encodeproject.org/files/ENCFF695ZFT/@@download/ENCFF695ZFT.bigWig released s3://encode-public/2016/05/11/50f15850-1db3-4716-acee-1784b0951d97/ENCFF695ZFT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF491XUJ bigWig bigWig read-depth normalized signal ce11 ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF808CWZ/ 9967014 Kevin White, UChicago 9659c5b91f51bce2431f65517f1bf3f4 https://www.encodeproject.org/files/ENCFF491XUJ/@@download/ENCFF491XUJ.bigWig released s3://encode-public/2016/05/11/c6f1b0bc-e4b2-40de-9e9d-631d7754bb89/ENCFF491XUJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF478XYT bigWig bigWig signal of unique reads ce11 ENCSR939PJG Control ChIP-seq /worm-donors/ENCDO735UTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190204/'], '@type': ['Target', 'Item'], 'name': 'eyg-1-celegans', 'label': 'eyg-1', '@id': '/targets/eyg-1-celegans/', 'title': 'eyg-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ca9c62d5-feab-4300-9132-317395512281', 'status': 'released'} ce10 II 9809388 9834381 DNA 2016-09-29 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF808CWZ/ 10030750 Kevin White, UChicago c83b4fbf1a9ec1f700b7b4df86d3d15e https://www.encodeproject.org/files/ENCFF478XYT/@@download/ENCFF478XYT.bigWig released s3://encode-public/2016/05/11/1aa34b3a-c162-49ed-9ac1-6a509ae7cb22/ENCFF478XYT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, missing genotype ENCFF650PTL fastq fastq reads ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF050RJA/ 4422438959 Michael Snyder, Stanford 6935493b6d12c779e3d4adb878f63670 SRA:SRR6212707 https://www.encodeproject.org/files/ENCFF650PTL/@@download/ENCFF650PTL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/26/63a75d36-4d28-4c53-9892-4bd6c43bd148/ENCFF650PTL.fastq.gz mild to moderate bottlenecking ENCFF050RJA fastq fastq reads ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF650PTL/ 5089531784 Michael Snyder, Stanford e73eab7330757ea7632846f87fa7cabb SRA:SRR6212707 https://www.encodeproject.org/files/ENCFF050RJA/@@download/ENCFF050RJA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/26/6b9aea68-356d-4e7f-845b-48953bd6842f/ENCFF050RJA.fastq.gz mild to moderate bottlenecking ENCFF418XDS bam bam unfiltered alignments hg19 ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF650PTL/, /files/ENCFF807MUK/, /files/ENCFF050RJA/ 8866946322 ENCODE Processing Pipeline 4146a561b5de95518273f42299836f7c https://www.encodeproject.org/files/ENCFF418XDS/@@download/ENCFF418XDS.bam released s3://encode-public/2016/10/27/efe4d73a-c91f-4a12-8f30-c6438561d3f0/ENCFF418XDS.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF837NJP bam bam alignments hg19 ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF650PTL/, /files/ENCFF807MUK/, /files/ENCFF050RJA/ 6546078127 ENCODE Processing Pipeline e9a55383dbf3fe134990fccb08ebccbb https://www.encodeproject.org/files/ENCFF837NJP/@@download/ENCFF837NJP.bam released s3://encode-public/2016/10/27/78e41a98-c322-460f-910c-3f18e3c4ca7d/ENCFF837NJP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF720SCO bam bam unfiltered alignments GRCh38 ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF650PTL/, /files/ENCFF643CGH/, /files/ENCFF050RJA/ 8879232960 ENCODE Processing Pipeline b6bd9f55cf83531f0532139945e755f6 https://www.encodeproject.org/files/ENCFF720SCO/@@download/ENCFF720SCO.bam released s3://encode-public/2016/10/27/55924574-ee6d-4abe-8e12-3337f3fd33e7/ENCFF720SCO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF626LKC bam bam alignments GRCh38 ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF650PTL/, /files/ENCFF643CGH/, /files/ENCFF050RJA/ 6562373850 ENCODE Processing Pipeline f050f2947b1ce8277b5da347ecc96764 https://www.encodeproject.org/files/ENCFF626LKC/@@download/ENCFF626LKC.bam released s3://encode-public/2016/10/27/4a5a4129-5001-489a-b446-c354f869e937/ENCFF626LKC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF427YDL bam bam unfiltered alignments GRCh38 ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF650PTL/, /files/ENCFF050RJA/ 8890922661 ENCODE Processing Pipeline c8928c08fe34df1da1445c2eddd6bef1 https://www.encodeproject.org/files/ENCFF427YDL/@@download/ENCFF427YDL.bam released s3://encode-public/2020/06/03/a8a861fe-fa16-4e57-aa7e-5e8c9174db8f/ENCFF427YDL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF303LLG bam bam alignments GRCh38 ENCSR135FYV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF650PTL/, /files/ENCFF050RJA/ 6481000603 ENCODE Processing Pipeline 735f2d0c4b8a7d4af0e34ef5924b49d1 https://www.encodeproject.org/files/ENCFF303LLG/@@download/ENCFF303LLG.bam released s3://encode-public/2020/06/03/752a618f-3f46-40f3-be21-f329e69c8f57/ENCFF303LLG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF121PRL fastq fastq reads ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF179UPL/ 2833940168 Michael Snyder, Stanford 84cf5d2cc9cd80708de1e7b1cdfc75b1 SRA:SRR6214163 https://www.encodeproject.org/files/ENCFF121PRL/@@download/ENCFF121PRL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/c64e1f42-49a6-4fcc-89b5-6d399f0b8ae4/ENCFF121PRL.fastq.gz ENCFF179UPL fastq fastq reads ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF121PRL/ 2820217206 Michael Snyder, Stanford a4cd45d9fdc5ce1b1bf90a03c9d99cf1 SRA:SRR6214163 https://www.encodeproject.org/files/ENCFF179UPL/@@download/ENCFF179UPL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/d3618aa4-32bc-4f94-b468-47c6954d511d/ENCFF179UPL.fastq.gz ENCFF306PDO bam bam unfiltered alignments hg19 ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF179UPL/, /files/ENCFF807MUK/, /files/ENCFF121PRL/ 6182993237 ENCODE Processing Pipeline fb39bb917fa198ff2ba2131488b6640a https://www.encodeproject.org/files/ENCFF306PDO/@@download/ENCFF306PDO.bam released s3://encode-public/2016/10/27/9931a87d-637a-4032-9d00-53f9a8715c49/ENCFF306PDO.bam ENCODE3 hg19 archived ENCFF422HMH bam bam unfiltered alignments GRCh38 ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF179UPL/, /files/ENCFF643CGH/, /files/ENCFF121PRL/ 6190934707 ENCODE Processing Pipeline 3abe845c0a05a8f2faed8055453abd6c https://www.encodeproject.org/files/ENCFF422HMH/@@download/ENCFF422HMH.bam released s3://encode-public/2016/10/27/fcdc1033-8ea7-4f1d-9ef4-148ab1a76074/ENCFF422HMH.bam ENCODE3 GRCh38 archived ENCFF334HAL bam bam alignments hg19 ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF179UPL/, /files/ENCFF807MUK/, /files/ENCFF121PRL/ 5170403776 ENCODE Processing Pipeline 8f4322814ab37509b5fed2c33fe285d7 https://www.encodeproject.org/files/ENCFF334HAL/@@download/ENCFF334HAL.bam released s3://encode-public/2016/10/27/4adfaa0f-bff3-4aae-8d1a-631290fa21a7/ENCFF334HAL.bam ENCODE3 hg19 archived ENCFF209HOO bam bam alignments GRCh38 ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF179UPL/, /files/ENCFF643CGH/, /files/ENCFF121PRL/ 5180205954 ENCODE Processing Pipeline e93a71235481d807d380c68b5a7d22cb https://www.encodeproject.org/files/ENCFF209HOO/@@download/ENCFF209HOO.bam released s3://encode-public/2016/10/27/afad1c3f-b5d4-46f7-9f08-11597ffe6b55/ENCFF209HOO.bam ENCODE3 GRCh38 archived ENCFF493LIZ bam bam unfiltered alignments GRCh38 ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF179UPL/, /files/ENCFF121PRL/ 6173534041 ENCODE Processing Pipeline c45182151a21595840455166278ded80 https://www.encodeproject.org/files/ENCFF493LIZ/@@download/ENCFF493LIZ.bam released s3://encode-public/2020/06/02/c991e5c6-7cb3-401c-a087-3ed100edc38f/ENCFF493LIZ.bam ENCODE4 GRCh38 released ENCFF016FCM bam bam alignments GRCh38 ENCSR975JIE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF179UPL/, /files/ENCFF121PRL/ 5113630367 ENCODE Processing Pipeline d0801ddb221c02810da437b46976bb7d https://www.encodeproject.org/files/ENCFF016FCM/@@download/ENCFF016FCM.bam released s3://encode-public/2020/06/02/97ad722e-0e12-4b22-9b68-d26b3ef3480b/ENCFF016FCM.bam ENCODE4 GRCh38 released ENCFF900VTD fastq fastq reads ENCSR877TIV Control ChIP-seq /worm-donors/ENCDO493UEG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172100/'], '@type': ['Target', 'Item'], 'name': 'F57C9.4-celegans', 'label': 'F57C9.4', '@id': '/targets/F57C9.4-celegans/', 'title': 'F57C9.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a549ba33-bb9d-44e5-ace4-667b5925404c', 'status': 'released'} ce11 I 4819201 4849785 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1121262147 Kevin White, UChicago 61f5387daab0ff455549d73bc39649cd https://www.encodeproject.org/files/ENCFF900VTD/@@download/ENCFF900VTD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/f3593604-effc-45b3-bd1f-436cbf40c40e/ENCFF900VTD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF839NRY bam bam alignments ce10 ENCSR877TIV Control ChIP-seq /worm-donors/ENCDO493UEG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172100/'], '@type': ['Target', 'Item'], 'name': 'F57C9.4-celegans', 'label': 'F57C9.4', '@id': '/targets/F57C9.4-celegans/', 'title': 'F57C9.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a549ba33-bb9d-44e5-ace4-667b5925404c', 'status': 'released'} ce11 I 4819201 4849785 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF900VTD/ 1465819694 Kevin White, UChicago 4274cddc719e4e113996535c9a200d6c https://www.encodeproject.org/files/ENCFF839NRY/@@download/ENCFF839NRY.bam released s3://encode-public/2017/10/06/56aacd8c-682a-48ae-9bd4-4847fbb3e3ab/ENCFF839NRY.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF418OBJ bam bam alignments ce11 ENCSR877TIV Control ChIP-seq /worm-donors/ENCDO493UEG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172100/'], '@type': ['Target', 'Item'], 'name': 'F57C9.4-celegans', 'label': 'F57C9.4', '@id': '/targets/F57C9.4-celegans/', 'title': 'F57C9.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a549ba33-bb9d-44e5-ace4-667b5925404c', 'status': 'released'} ce11 I 4819201 4849785 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF900VTD/ 1466941547 Kevin White, UChicago 5b52c95ee718b5e6eae77867b54d28db https://www.encodeproject.org/files/ENCFF418OBJ/@@download/ENCFF418OBJ.bam released s3://encode-public/2017/10/06/c05efa3c-7280-4ed6-8968-dbc362a2a24e/ENCFF418OBJ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF280BPU bigWig bigWig read-depth normalized signal ce10 ENCSR877TIV Control ChIP-seq /worm-donors/ENCDO493UEG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172100/'], '@type': ['Target', 'Item'], 'name': 'F57C9.4-celegans', 'label': 'F57C9.4', '@id': '/targets/F57C9.4-celegans/', 'title': 'F57C9.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a549ba33-bb9d-44e5-ace4-667b5925404c', 'status': 'released'} ce11 I 4819201 4849785 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF839NRY/ 9915297 Kevin White, UChicago aff8412ecc4de449f4839fe4538cd1f4 https://www.encodeproject.org/files/ENCFF280BPU/@@download/ENCFF280BPU.bigWig released s3://encode-public/2017/10/09/fbafac33-524b-43eb-b906-1a3e5321059b/ENCFF280BPU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF870XWU bigWig bigWig signal of unique reads ce10 ENCSR877TIV Control ChIP-seq /worm-donors/ENCDO493UEG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172100/'], '@type': ['Target', 'Item'], 'name': 'F57C9.4-celegans', 'label': 'F57C9.4', '@id': '/targets/F57C9.4-celegans/', 'title': 'F57C9.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a549ba33-bb9d-44e5-ace4-667b5925404c', 'status': 'released'} ce11 I 4819201 4849785 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF839NRY/ 9958313 Kevin White, UChicago 90d605abac3db3a3403a54a5e72665f0 https://www.encodeproject.org/files/ENCFF870XWU/@@download/ENCFF870XWU.bigWig released s3://encode-public/2017/10/09/74151136-7ad5-4332-804d-5fb63c75bd92/ENCFF870XWU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF297SLA bigWig bigWig read-depth normalized signal ce11 ENCSR877TIV Control ChIP-seq /worm-donors/ENCDO493UEG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172100/'], '@type': ['Target', 'Item'], 'name': 'F57C9.4-celegans', 'label': 'F57C9.4', '@id': '/targets/F57C9.4-celegans/', 'title': 'F57C9.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a549ba33-bb9d-44e5-ace4-667b5925404c', 'status': 'released'} ce11 I 4819201 4849785 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF418OBJ/ 9916092 Kevin White, UChicago 3b35cb1a48288c7d34c722f5b4564c13 https://www.encodeproject.org/files/ENCFF297SLA/@@download/ENCFF297SLA.bigWig released s3://encode-public/2017/10/09/e7c4d4a9-be5a-45ed-b8ab-8996c8c35cb8/ENCFF297SLA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF074MAM bigWig bigWig signal of unique reads ce11 ENCSR877TIV Control ChIP-seq /worm-donors/ENCDO493UEG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172100/'], '@type': ['Target', 'Item'], 'name': 'F57C9.4-celegans', 'label': 'F57C9.4', '@id': '/targets/F57C9.4-celegans/', 'title': 'F57C9.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a549ba33-bb9d-44e5-ace4-667b5925404c', 'status': 'released'} ce11 I 4819201 4849785 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF418OBJ/ 9955641 Kevin White, UChicago cfd9d27a1839549e19e510175b20c268 https://www.encodeproject.org/files/ENCFF074MAM/@@download/ENCFF074MAM.bigWig released s3://encode-public/2017/10/09/c38959d7-a4d1-4368-bc7d-5cdfba115b00/ENCFF074MAM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF064AUT fastq fastq reads ENCSR656HDN Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA modENCODE >200 1 1_1 50 single-ended 863007699 Kevin White, UChicago b0ba045191d411270e969a6511f25617 https://www.encodeproject.org/files/ENCFF064AUT/@@download/ENCFF064AUT.fastq.gz Illumina HiSeq 2000 /files/ENCFF254SYC/ archived s3://encode-public/2016/08/24/4d494b89-1701-45e3-9aff-3f0eb6dba2a8/ENCFF064AUT.fastq.gz lacking processed data ENCFF465EUM fastq fastq reads ENCSR608KZR Control ChIP-seq /worm-donors/ENCDO964PKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171617/'], '@type': ['Target', 'Item'], 'name': 'ztf-3-celegans', 'label': 'ztf-3', '@id': '/targets/ztf-3-celegans/', 'title': 'ztf-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '596d9f6a-605c-46b8-b406-d5f1260fd53f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 4 4_1 50 single-ended 789101909 Kevin White, UChicago 772d0c7f0fb92fff10af5692ef548bcf https://www.encodeproject.org/files/ENCFF465EUM/@@download/ENCFF465EUM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/b08a713f-744b-4cd0-8ff2-6a1cde66d328/ENCFF465EUM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF110RBJ bam bam alignments ce11 ENCSR608KZR Control ChIP-seq /worm-donors/ENCDO964PKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171617/'], '@type': ['Target', 'Item'], 'name': 'ztf-3-celegans', 'label': 'ztf-3', '@id': '/targets/ztf-3-celegans/', 'title': 'ztf-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '596d9f6a-605c-46b8-b406-d5f1260fd53f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 4 4_1 50 /files/ENCFF465EUM/, /files/ENCFF586MOL/ 1028436434 Kevin White, UChicago 3fb4be07fb60e8d6aa7c248649a41369 https://www.encodeproject.org/files/ENCFF110RBJ/@@download/ENCFF110RBJ.bam released s3://encode-public/2018/03/01/d9b9c858-d4c6-49e1-a9f0-afdfb7d68f9b/ENCFF110RBJ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF595AMU bigWig bigWig signal of unique reads ce11 ENCSR608KZR Control ChIP-seq /worm-donors/ENCDO964PKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171617/'], '@type': ['Target', 'Item'], 'name': 'ztf-3-celegans', 'label': 'ztf-3', '@id': '/targets/ztf-3-celegans/', 'title': 'ztf-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '596d9f6a-605c-46b8-b406-d5f1260fd53f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 4 4_1 /files/ENCFF110RBJ/ 9935956 Kevin White, UChicago 78c9aba5dbe0fa3bbf63da8bd6f673d1 https://www.encodeproject.org/files/ENCFF595AMU/@@download/ENCFF595AMU.bigWig released s3://encode-public/2018/03/01/699e7bbb-83cd-4ca0-9448-65457355b453/ENCFF595AMU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF375JWP bigWig bigWig read-depth normalized signal ce11 ENCSR608KZR Control ChIP-seq /worm-donors/ENCDO964PKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171617/'], '@type': ['Target', 'Item'], 'name': 'ztf-3-celegans', 'label': 'ztf-3', '@id': '/targets/ztf-3-celegans/', 'title': 'ztf-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '596d9f6a-605c-46b8-b406-d5f1260fd53f', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 4 4_1 /files/ENCFF110RBJ/ 10004645 Kevin White, UChicago ad5837fc7555d41a4aceac5c5d9bc052 https://www.encodeproject.org/files/ENCFF375JWP/@@download/ENCFF375JWP.bigWig released s3://encode-public/2018/03/01/202f90fe-702c-40ae-86e5-0fd4ae2f8f29/ENCFF375JWP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF214TSQ fastq fastq reads ENCSR128PFN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 single-ended 1063698333 Yijun Ruan, JAX 1fb81fb0cfe57b1dc8b421280a1d478c SRA:SRR14105300 https://www.encodeproject.org/files/ENCFF214TSQ/@@download/ENCFF214TSQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/08/07/d6749099-0ee9-4775-94b6-e51cd3583555/ENCFF214TSQ.fastq.gz low read depth ENCFF640EXT bam bam alignments GRCh38 ENCSR128PFN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF906FLV/, /files/ENCFF214TSQ/ 1024404182 Yijun Ruan, JAX bbff05bb572c55e2c7141aad6b0a349e https://www.encodeproject.org/files/ENCFF640EXT/@@download/ENCFF640EXT.bam released s3://encode-public/2020/08/07/3d1a175e-7070-4e53-a5af-87343309190a/ENCFF640EXT.bam Lab custom GRCh38 archived low read depth ENCFF314WMF bam bam alignments GRCh38 ENCSR128PFN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF214TSQ/ 1018790007 ENCODE Processing Pipeline 38579a19ce885a8b0283aa2afa96af8e https://www.encodeproject.org/files/ENCFF314WMF/@@download/ENCFF314WMF.bam released s3://encode-public/2020/11/13/ccedb802-7d23-4e99-a8a8-137aa5df8e9e/ENCFF314WMF.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF582OEA bam bam unfiltered alignments GRCh38 ENCSR128PFN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF214TSQ/ 1221996269 ENCODE Processing Pipeline eb3b7e77074855f9dc560139856fd2ee https://www.encodeproject.org/files/ENCFF582OEA/@@download/ENCFF582OEA.bam released s3://encode-public/2020/11/13/90aca9e8-b317-48ff-b1c3-13df442c6419/ENCFF582OEA.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF706AXA bam bam alignments ce11 ENCSR424EIZ Control ChIP-seq /worm-donors/ENCDO092OOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172733/'], '@type': ['Target', 'Item'], 'name': 'gei-17-celegans', 'label': 'gei-17', '@id': '/targets/gei-17-celegans/', 'title': 'gei-17 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair'], 'uuid': '1a3b76c0-e182-4048-974b-f2081b7daf18', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3, 5 3_1, 5_1 50 /files/ENCFF990IAU/, /files/ENCFF757NHI/, /files/ENCFF586MOL/ 1805046294 Kevin White, UChicago 99f71eb62e52fc14c992d44345f6a302 https://www.encodeproject.org/files/ENCFF706AXA/@@download/ENCFF706AXA.bam released s3://encode-public/2018/02/28/67f876cc-0bc1-4eaa-9169-4bb0366a12a0/ENCFF706AXA.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF990IAU fastq fastq reads ENCSR424EIZ Control ChIP-seq /worm-donors/ENCDO092OOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172733/'], '@type': ['Target', 'Item'], 'name': 'gei-17-celegans', 'label': 'gei-17', '@id': '/targets/gei-17-celegans/', 'title': 'gei-17 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair'], 'uuid': '1a3b76c0-e182-4048-974b-f2081b7daf18', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3 3_1 50 single-ended 856120119 Kevin White, UChicago 70667390fda8c2c1df7b6d7cece66a41 https://www.encodeproject.org/files/ENCFF990IAU/@@download/ENCFF990IAU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/67ca66fd-6cdb-4f29-bebc-78c5ea2918c6/ENCFF990IAU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF757NHI fastq fastq reads ENCSR424EIZ Control ChIP-seq /worm-donors/ENCDO092OOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172733/'], '@type': ['Target', 'Item'], 'name': 'gei-17-celegans', 'label': 'gei-17', '@id': '/targets/gei-17-celegans/', 'title': 'gei-17 (Caenorhabditis 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'14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172733/'], '@type': ['Target', 'Item'], 'name': 'gei-17-celegans', 'label': 'gei-17', '@id': '/targets/gei-17-celegans/', 'title': 'gei-17 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair'], 'uuid': '1a3b76c0-e182-4048-974b-f2081b7daf18', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3, 5 3_1, 5_1 /files/ENCFF706AXA/ 9942102 Kevin White, UChicago a33320e55701f04afab2d102ce00fb5a https://www.encodeproject.org/files/ENCFF028CIK/@@download/ENCFF028CIK.bigWig released s3://encode-public/2018/03/01/6c7ddd14-0adf-4cc3-ab30-a7432ade7394/ENCFF028CIK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF705BXM tagAlign tagAlign alignments hg19 ENCSR645QVG Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF878QDE/ 240975681 Anshul Kundaje, Stanford c817b699b4ee2f56e1c0c1cd039a143b https://www.encodeproject.org/files/ENCFF705BXM/@@download/ENCFF705BXM.tagAlign.gz archived s3://encode-public/2016/05/02/a40096ac-e1fc-4b59-b23c-b551221d2c12/ENCFF705BXM.tagAlign.gz Lab custom hg19 archived low read length ENCFF878QDE fastq fastq reads ENCSR645QVG Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2095695066 Zhiping Weng, UMass 081ea4ba669a47f98099cc8ad2438c13 SRA:SRR316173 https://www.encodeproject.org/files/ENCFF878QDE/@@download/ENCFF878QDE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/7a4aea75-ebb2-4ab5-b833-3cd58c3cd1bd/ENCFF878QDE.fastq.gz low read length ENCFF110LKZ bam bam unfiltered alignments GRCh38 ENCSR645QVG Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF878QDE/, /files/ENCFF643CGH/ 2591393580 ENCODE Processing Pipeline 187a8d622ddafe22c54859e842a887f4 https://www.encodeproject.org/files/ENCFF110LKZ/@@download/ENCFF110LKZ.bam released s3://encode-public/2016/12/19/e385332f-fa94-4667-8b6e-b1c5fc1c394f/ENCFF110LKZ.bam ENCODE3 GRCh38 archived low read length ENCFF151EVR bam bam unfiltered alignments hg19 ENCSR645QVG Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF878QDE/, /files/ENCFF807MUK/ 2578127546 ENCODE Processing Pipeline 8bcc3548e5f5be815d7ab3a28c39bc63 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/files/ENCFF110MCL/ 2499026397 ENCODE Processing Pipeline c25cb4e5d175cec65deaaa4dcfdb7990 https://www.encodeproject.org/files/ENCFF557QAS/@@download/ENCFF557QAS.bam released s3://encode-public/2020/10/08/8fce7fdf-e01e-4536-b25e-7455ab779d84/ENCFF557QAS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF402ZAJ bam bam alignments GRCh38 ENCSR775RVY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF906FLV/, /files/ENCFF904UJY/ 952786858 Yijun Ruan, JAX 55356cbe49d869ca42bde63caf249042 https://www.encodeproject.org/files/ENCFF402ZAJ/@@download/ENCFF402ZAJ.bam released s3://encode-public/2020/08/07/718f8daf-f977-47f8-bbda-5ad7f7f2f942/ENCFF402ZAJ.bam Lab custom GRCh38 archived low read depth ENCFF904UJY fastq fastq reads ENCSR775RVY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 single-ended 1023793945 Yijun Ruan, JAX e3c974466617e3221b68ca9b46bf550d SRA:SRR14103704 https://www.encodeproject.org/files/ENCFF904UJY/@@download/ENCFF904UJY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/08/07/a87aef02-ef35-4285-81b0-8d0e5ac50dff/ENCFF904UJY.fastq.gz low read depth ENCFF665KXT bam bam unfiltered alignments GRCh38 ENCSR775RVY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF904UJY/, /files/ENCFF110MCL/ 1173414683 ENCODE Processing Pipeline 926583e5df480df6f3a95f443ace4b6b https://www.encodeproject.org/files/ENCFF665KXT/@@download/ENCFF665KXT.bam released s3://encode-public/2020/11/13/79af2b25-ae21-4262-bb98-2ee9c0d0bbe3/ENCFF665KXT.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF339WWO bam bam alignments GRCh38 ENCSR775RVY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF904UJY/, /files/ENCFF110MCL/ 958060764 ENCODE Processing Pipeline 2230260467c1ab78f171d8c9c0ff1124 https://www.encodeproject.org/files/ENCFF339WWO/@@download/ENCFF339WWO.bam released s3://encode-public/2020/11/13/982e4d7e-baa3-4cfd-80a4-91fc03fb0ec8/ENCFF339WWO.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF022NFX fastq fastq reads ENCSR235TIB Control ChIP-seq /fly-donors/ENCDO667TLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38065/'], '@type': ['Target', 'Item'], 'name': 'trh-dmelanogaster', 'label': 'trh', '@id': '/targets/trh-dmelanogaster/', 'title': 'trh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd241a62d-0e19-4b76-8cb1-ab02609ebabd', 'status': 'released'} dm3 3L 298399 395204 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 535340953 Kevin White, UChicago bebb239ee3f6e84277cbd517e6e9f80f https://www.encodeproject.org/files/ENCFF022NFX/@@download/ENCFF022NFX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/21/ba119742-ed2c-43f2-bfc8-7a033a49fb27/ENCFF022NFX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF092SCD bam bam alignments dm3 ENCSR235TIB Control ChIP-seq /fly-donors/ENCDO667TLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38065/'], '@type': ['Target', 'Item'], 'name': 'trh-dmelanogaster', 'label': 'trh', '@id': '/targets/trh-dmelanogaster/', 'title': 'trh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd241a62d-0e19-4b76-8cb1-ab02609ebabd', 'status': 'released'} dm3 3L 298399 395204 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF022NFX/ 654532415 Kevin White, UChicago 099e4b3ec02a9a2d53d37d3535b55227 https://www.encodeproject.org/files/ENCFF092SCD/@@download/ENCFF092SCD.bam released s3://encode-public/2015/10/21/b8a598f0-3727-43a8-9aee-92d326ab84fa/ENCFF092SCD.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF470JKO bigWig bigWig read-depth normalized signal dm3 ENCSR235TIB Control ChIP-seq /fly-donors/ENCDO667TLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38065/'], '@type': ['Target', 'Item'], 'name': 'trh-dmelanogaster', 'label': 'trh', '@id': '/targets/trh-dmelanogaster/', 'title': 'trh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd241a62d-0e19-4b76-8cb1-ab02609ebabd', 'status': 'released'} dm3 3L 298399 395204 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF092SCD/ 15277000 Kevin White, UChicago 4808cd326ea249af35973cee740c09ae https://www.encodeproject.org/files/ENCFF470JKO/@@download/ENCFF470JKO.bigWig released s3://encode-public/2015/10/21/d2921a58-ab38-4077-83df-3ba3b8861066/ENCFF470JKO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF628CSU bigWig bigWig signal of unique reads dm3 ENCSR235TIB Control ChIP-seq /fly-donors/ENCDO667TLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38065/'], '@type': ['Target', 'Item'], 'name': 'trh-dmelanogaster', 'label': 'trh', '@id': '/targets/trh-dmelanogaster/', 'title': 'trh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd241a62d-0e19-4b76-8cb1-ab02609ebabd', 'status': 'released'} dm3 3L 298399 395204 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF092SCD/ 15281401 Kevin White, UChicago cb8cdcde9233e7a8a165c80486c5a5ae https://www.encodeproject.org/files/ENCFF628CSU/@@download/ENCFF628CSU.bigWig released s3://encode-public/2015/10/21/fc788917-ca12-45a9-a3bb-ce0c22bb7ab0/ENCFF628CSU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF276BVD bam bam alignments dm6 ENCSR235TIB Control ChIP-seq /fly-donors/ENCDO667TLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38065/'], '@type': ['Target', 'Item'], 'name': 'trh-dmelanogaster', 'label': 'trh', '@id': '/targets/trh-dmelanogaster/', 'title': 'trh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd241a62d-0e19-4b76-8cb1-ab02609ebabd', 'status': 'released'} dm3 3L 298399 395204 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF022NFX/ 649562028 Kevin White, UChicago 5bbf4aeb1bce984d4095d6af104c78c1 https://www.encodeproject.org/files/ENCFF276BVD/@@download/ENCFF276BVD.bam released s3://encode-public/2016/04/22/72c25d88-5c9b-47b9-9424-456b8bf2ea50/ENCFF276BVD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF904QPG bigWig bigWig signal of unique reads dm6 ENCSR235TIB Control ChIP-seq /fly-donors/ENCDO667TLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38065/'], '@type': ['Target', 'Item'], 'name': 'trh-dmelanogaster', 'label': 'trh', '@id': '/targets/trh-dmelanogaster/', 'title': 'trh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd241a62d-0e19-4b76-8cb1-ab02609ebabd', 'status': 'released'} dm3 3L 298399 395204 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF276BVD/ 17387061 Kevin White, UChicago 52de8de84fd4348d5ef883646a2b6c8c https://www.encodeproject.org/files/ENCFF904QPG/@@download/ENCFF904QPG.bigWig released s3://encode-public/2016/06/20/176377a3-c775-4564-bad2-6c1159c79a49/ENCFF904QPG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF888PDN bigWig bigWig read-depth normalized signal dm6 ENCSR235TIB Control ChIP-seq /fly-donors/ENCDO667TLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38065/'], '@type': ['Target', 'Item'], 'name': 'trh-dmelanogaster', 'label': 'trh', '@id': '/targets/trh-dmelanogaster/', 'title': 'trh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd241a62d-0e19-4b76-8cb1-ab02609ebabd', 'status': 'released'} dm3 3L 298399 395204 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF276BVD/ 17375632 Kevin White, UChicago 4a9d01bbc78f68d56cdf3444053b46ff https://www.encodeproject.org/files/ENCFF888PDN/@@download/ENCFF888PDN.bigWig released s3://encode-public/2016/06/20/c66e365d-802c-43da-9cac-3a8fe828ad82/ENCFF888PDN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF527GRY fastq fastq reads ENCSR348OGP Control ChIP-seq /fly-donors/ENCDO266PRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31429/'], '@type': ['Target', 'Item'], 'name': 'ovo-dmelanogaster', 'label': 'ovo', '@id': '/targets/ovo-dmelanogaster/', 'title': 'ovo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '27a01edd-9cdc-4f9b-abfc-8db31619f93e', 'status': 'released'} dm3 X 4874247 4971462 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 268230138 Kevin White, UChicago b687013e8a975dce14d4e0a0a7d1b32d https://www.encodeproject.org/files/ENCFF527GRY/@@download/ENCFF527GRY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/21/4e3e785f-46a0-4234-bb9f-ae016c8dc8ba/ENCFF527GRY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF901GJH bam bam alignments dm3 ENCSR348OGP Control ChIP-seq /fly-donors/ENCDO266PRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31429/'], '@type': ['Target', 'Item'], 'name': 'ovo-dmelanogaster', 'label': 'ovo', '@id': '/targets/ovo-dmelanogaster/', 'title': 'ovo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '27a01edd-9cdc-4f9b-abfc-8db31619f93e', 'status': 'released'} dm3 X 4874247 4971462 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF527GRY/ 327668578 Kevin White, UChicago 9215cf9dd23077d94302f9af0fe352d4 https://www.encodeproject.org/files/ENCFF901GJH/@@download/ENCFF901GJH.bam released s3://encode-public/2015/10/21/952f5b66-90c5-4b3e-9903-8d0e0fc7592d/ENCFF901GJH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF345WVU bigWig bigWig signal of unique reads dm3 ENCSR348OGP Control ChIP-seq /fly-donors/ENCDO266PRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31429/'], '@type': ['Target', 'Item'], 'name': 'ovo-dmelanogaster', 'label': 'ovo', '@id': '/targets/ovo-dmelanogaster/', 'title': 'ovo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '27a01edd-9cdc-4f9b-abfc-8db31619f93e', 'status': 'released'} dm3 X 4874247 4971462 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF901GJH/ 14983881 Kevin White, UChicago a578189f1de955078a8c79a2e48a261d https://www.encodeproject.org/files/ENCFF345WVU/@@download/ENCFF345WVU.bigWig released s3://encode-public/2015/10/21/862467ad-4000-4bbe-b04c-c85b04c91715/ENCFF345WVU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF687SHK bigWig bigWig read-depth normalized signal dm3 ENCSR348OGP Control ChIP-seq /fly-donors/ENCDO266PRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31429/'], '@type': ['Target', 'Item'], 'name': 'ovo-dmelanogaster', 'label': 'ovo', '@id': '/targets/ovo-dmelanogaster/', 'title': 'ovo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '27a01edd-9cdc-4f9b-abfc-8db31619f93e', 'status': 'released'} dm3 X 4874247 4971462 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF901GJH/ 14989573 Kevin White, UChicago c15091ab607e5312ca6e407b1d87e06e https://www.encodeproject.org/files/ENCFF687SHK/@@download/ENCFF687SHK.bigWig released s3://encode-public/2015/10/22/bc6314e0-2d47-45db-938d-5a0695a23d3c/ENCFF687SHK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF879YXD bam bam alignments dm6 ENCSR348OGP Control ChIP-seq /fly-donors/ENCDO266PRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31429/'], '@type': ['Target', 'Item'], 'name': 'ovo-dmelanogaster', 'label': 'ovo', '@id': '/targets/ovo-dmelanogaster/', 'title': 'ovo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '27a01edd-9cdc-4f9b-abfc-8db31619f93e', 'status': 'released'} dm3 X 4874247 4971462 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF527GRY/ 324730633 Kevin White, UChicago 499538b0cde23bcbce7105052c55adbf https://www.encodeproject.org/files/ENCFF879YXD/@@download/ENCFF879YXD.bam released s3://encode-public/2016/04/22/3c07ef0e-c0c2-4ef0-b5bf-da3f61ef9ffe/ENCFF879YXD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF870LNQ bigWig bigWig read-depth normalized signal dm6 ENCSR348OGP Control ChIP-seq /fly-donors/ENCDO266PRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31429/'], '@type': ['Target', 'Item'], 'name': 'ovo-dmelanogaster', 'label': 'ovo', '@id': '/targets/ovo-dmelanogaster/', 'title': 'ovo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '27a01edd-9cdc-4f9b-abfc-8db31619f93e', 'status': 'released'} dm3 X 4874247 4971462 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879YXD/ 16857776 Kevin White, UChicago eef9ab9545a962718aa88e99708e1906 https://www.encodeproject.org/files/ENCFF870LNQ/@@download/ENCFF870LNQ.bigWig released s3://encode-public/2016/06/21/3e7acb81-ea25-4f7c-a59e-8c2b27466faf/ENCFF870LNQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF939JEN bigWig bigWig signal of unique reads dm6 ENCSR348OGP Control ChIP-seq /fly-donors/ENCDO266PRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31429/'], '@type': ['Target', 'Item'], 'name': 'ovo-dmelanogaster', 'label': 'ovo', '@id': '/targets/ovo-dmelanogaster/', 'title': 'ovo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '27a01edd-9cdc-4f9b-abfc-8db31619f93e', 'status': 'released'} dm3 X 4874247 4971462 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879YXD/ 16853312 Kevin White, UChicago b82ec1a8e888392c373be20fa76f87d9 https://www.encodeproject.org/files/ENCFF939JEN/@@download/ENCFF939JEN.bigWig released s3://encode-public/2016/06/21/8f490e5d-bc8d-4e47-99e7-11a0b9ccd5bc/ENCFF939JEN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF455FIC tagAlign tagAlign alignments hg19 ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF838NYU/ 93257138 Anshul Kundaje, Stanford 432af134178fa029fedb3a1da1232beb https://www.encodeproject.org/files/ENCFF455FIC/@@download/ENCFF455FIC.tagAlign.gz archived s3://encode-public/2016/05/02/b3e13c86-6e48-4f0b-8d0d-c210f6e6fad5/ENCFF455FIC.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF838NYU fastq fastq reads ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 846002931 Zhiping Weng, UMass fc4d0b5a9a0ece236504832bcde69bc2 SRA:SRR037652 https://www.encodeproject.org/files/ENCFF838NYU/@@download/ENCFF838NYU.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/71949e09-1637-4101-b446-e93cf366c844/ENCFF838NYU.fastq.gz low read depth, low read length ENCFF770QTC bam bam unfiltered alignments hg19 ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF838NYU/, /files/ENCFF807MUK/ 1022148671 ENCODE Processing Pipeline 169d4c1eb0937a9f7265dd71f070caeb https://www.encodeproject.org/files/ENCFF770QTC/@@download/ENCFF770QTC.bam released s3://encode-public/2016/12/19/d5ef8216-80fc-4867-a2d3-c86beac21433/ENCFF770QTC.bam ENCODE3 hg19 archived low read depth, low read length ENCFF928UQY bam bam alignments hg19 ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF838NYU/, /files/ENCFF807MUK/ 550231699 ENCODE Processing Pipeline 5392c16adf6f7231376ab163b6689be6 https://www.encodeproject.org/files/ENCFF928UQY/@@download/ENCFF928UQY.bam released s3://encode-public/2016/12/19/15b07497-70bc-486b-9215-64a4c008b70b/ENCFF928UQY.bam ENCODE3 hg19 archived low read depth, low read length ENCFF825ZAO bam bam unfiltered alignments GRCh38 ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF838NYU/, /files/ENCFF643CGH/ 1025320611 ENCODE Processing Pipeline f5f9869b4568d2a3bc40fdcd4a320bfb https://www.encodeproject.org/files/ENCFF825ZAO/@@download/ENCFF825ZAO.bam released s3://encode-public/2016/12/19/c9dcdaa8-4356-4ccf-b014-f6185e6d6151/ENCFF825ZAO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF465UIJ bam bam alignments GRCh38 ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF838NYU/, /files/ENCFF643CGH/ 549990922 ENCODE Processing Pipeline 504731c8925c812c5630361de11f1872 https://www.encodeproject.org/files/ENCFF465UIJ/@@download/ENCFF465UIJ.bam released s3://encode-public/2016/12/19/346badf4-0872-4afa-849c-2316c1f7cdad/ENCFF465UIJ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF401WAJ bam bam unfiltered alignments GRCh38 ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF838NYU/ 992819633 ENCODE Processing Pipeline 228aa4eab19bcd15fd01ee86ea3b1478 https://www.encodeproject.org/files/ENCFF401WAJ/@@download/ENCFF401WAJ.bam released s3://encode-public/2020/10/08/1768d4cf-dba6-4b8c-a97f-108b7001a10a/ENCFF401WAJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF821GNU bam bam alignments GRCh38 ENCSR704GTT Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF838NYU/ 598835906 ENCODE Processing Pipeline a3ccdaef1c725b02a22feee160772031 https://www.encodeproject.org/files/ENCFF821GNU/@@download/ENCFF821GNU.bam released s3://encode-public/2020/10/08/7b0ebf2f-0eb6-4de6-b296-ca1e0e7b4288/ENCFF821GNU.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF430VQF fastq fastq reads ENCSR670GWL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1080'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/65982/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN18-human', 'label': 'ZSCAN18', '@id': '/targets/ZSCAN18-human/', 'title': 'ZSCAN18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1fd054d2-2aff-4198-b4d2-2c2e8b37861b', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF430ZEK/ 2607059863 Michael Snyder, Stanford bd17a02e53dd6ac9bc56a59dff3c6842 SRA:SRR14839674 https://www.encodeproject.org/files/ENCFF430VQF/@@download/ENCFF430VQF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/17210205-d59f-48f2-815b-5521223fce71/ENCFF430VQF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF430ZEK fastq fastq reads ENCSR670GWL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1080'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/65982/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN18-human', 'label': 'ZSCAN18', '@id': '/targets/ZSCAN18-human/', 'title': 'ZSCAN18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1fd054d2-2aff-4198-b4d2-2c2e8b37861b', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF430VQF/ 2797933466 Michael Snyder, Stanford 24540dc15ef18aaad945841b921174c8 SRA:SRR14839674 https://www.encodeproject.org/files/ENCFF430ZEK/@@download/ENCFF430ZEK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/d0f1fa55-9805-4eb6-b1b7-30d8d96643aa/ENCFF430ZEK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF674VOJ bam bam alignments GRCh38 ENCSR670GWL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1080'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/65982/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN18-human', 'label': 'ZSCAN18', '@id': '/targets/ZSCAN18-human/', 'title': 'ZSCAN18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1fd054d2-2aff-4198-b4d2-2c2e8b37861b', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF430VQF/, /files/ENCFF430ZEK/ 3306654482 ENCODE Processing Pipeline c95e9861475bcb50d175e82049c57d9a https://www.encodeproject.org/files/ENCFF674VOJ/@@download/ENCFF674VOJ.bam released s3://encode-public/2020/04/20/20fb2988-a57f-4865-ac87-eb53fae4fa33/ENCFF674VOJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF606JXT bam bam unfiltered alignments GRCh38 ENCSR670GWL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1080'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/65982/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN18-human', 'label': 'ZSCAN18', '@id': '/targets/ZSCAN18-human/', 'title': 'ZSCAN18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1fd054d2-2aff-4198-b4d2-2c2e8b37861b', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF430VQF/, /files/ENCFF430ZEK/ 5031117353 ENCODE Processing Pipeline 3108ed87cf9d95e81caf6a8a991f9392 https://www.encodeproject.org/files/ENCFF606JXT/@@download/ENCFF606JXT.bam released s3://encode-public/2020/04/20/192e5fe4-dc1e-4184-9624-652885a67766/ENCFF606JXT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF626CIT fastq fastq reads ENCSR091ZYU Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 965699887 Kevin White, UChicago f82ae0c5774d3495962513ff4abc4c21 https://www.encodeproject.org/files/ENCFF626CIT/@@download/ENCFF626CIT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/09/c486a2ff-fed6-414b-8e8e-4ad19545e393/ENCFF626CIT.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF349FXY bam bam alignments ce10 ENCSR091ZYU Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF626CIT/ 1137881277 Kevin White, UChicago 7c833d3a186a30a671573ba75e3d2850 https://www.encodeproject.org/files/ENCFF349FXY/@@download/ENCFF349FXY.bam released s3://encode-public/2016/05/10/11894e04-0862-45ec-88ce-f367647cb7db/ENCFF349FXY.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF113NFX bam bam alignments ce11 ENCSR091ZYU Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF626CIT/ 1138788963 Kevin White, UChicago fb0511a37c3d9818f54e10678c21e944 https://www.encodeproject.org/files/ENCFF113NFX/@@download/ENCFF113NFX.bam released s3://encode-public/2016/05/10/133be17a-9b04-4b50-82b8-1c400fa71f08/ENCFF113NFX.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF047MLP bigWig bigWig read-depth normalized signal ce10 ENCSR091ZYU Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF349FXY/ 10049563 Kevin White, UChicago 23d856ffac6325c029740470108c5b6e https://www.encodeproject.org/files/ENCFF047MLP/@@download/ENCFF047MLP.bigWig released s3://encode-public/2016/05/11/9f596684-3d9f-4aa4-979f-60c05de3c8b7/ENCFF047MLP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF999OMP bigWig bigWig signal of unique reads ce10 ENCSR091ZYU Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF349FXY/ 10028375 Kevin White, UChicago 1ee8ad51ccf9d81abbfe056e5b3ae0fe https://www.encodeproject.org/files/ENCFF999OMP/@@download/ENCFF999OMP.bigWig released s3://encode-public/2016/05/11/73bc5cfb-f5ee-4e85-9888-ca8580c99d4b/ENCFF999OMP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF591JPK bigWig bigWig read-depth normalized signal ce11 ENCSR091ZYU Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF113NFX/ 10047370 Kevin White, UChicago 295dc5d3c62b748235f33ea7ab5f6e4d https://www.encodeproject.org/files/ENCFF591JPK/@@download/ENCFF591JPK.bigWig released s3://encode-public/2016/05/11/ac28ce32-4fcc-4d2a-927f-c29e9985e58b/ENCFF591JPK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF243LJP bigWig bigWig signal of unique reads ce11 ENCSR091ZYU Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF113NFX/ 10027527 Kevin White, UChicago c409766b41db22727ed527f94ca3b59e https://www.encodeproject.org/files/ENCFF243LJP/@@download/ENCFF243LJP.bigWig released s3://encode-public/2016/05/11/50c5217d-e6d0-45dc-87de-3db0c18a08de/ENCFF243LJP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF103IIT fastq fastq reads ENCSR143RMG Control ChIP-seq /worm-donors/ENCDO002GDY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175634/'], '@type': ['Target', 'Item'], 'name': 'mel-28-celegans', 'label': 'mel-28', '@id': '/targets/mel-28-celegans/', 'title': 'mel-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f374a66f-2b08-4116-92b5-7e6d84d0834f', 'status': 'released'} ce11 III 4763371 4798826 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1184541167 Kevin White, UChicago d3a9c450b6b232e86454d04d0ff3b305 https://www.encodeproject.org/files/ENCFF103IIT/@@download/ENCFF103IIT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/b6fe5665-f4a6-4681-93e5-503bb85043e3/ENCFF103IIT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF343LLS bam bam alignments ce10 ENCSR143RMG Control ChIP-seq /worm-donors/ENCDO002GDY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175634/'], '@type': ['Target', 'Item'], 'name': 'mel-28-celegans', 'label': 'mel-28', '@id': '/targets/mel-28-celegans/', 'title': 'mel-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f374a66f-2b08-4116-92b5-7e6d84d0834f', 'status': 'released'} ce11 III 4763371 4798826 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF103IIT/, /files/ENCFF987UMF/ 1562891900 Kevin White, UChicago 4f294bb2b9702da5f86e3dd7991d02b2 https://www.encodeproject.org/files/ENCFF343LLS/@@download/ENCFF343LLS.bam released s3://encode-public/2016/10/04/b9088d80-4014-4bdf-92ee-97080710db17/ENCFF343LLS.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF463JLO bam bam alignments ce11 ENCSR143RMG Control ChIP-seq /worm-donors/ENCDO002GDY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175634/'], '@type': ['Target', 'Item'], 'name': 'mel-28-celegans', 'label': 'mel-28', '@id': '/targets/mel-28-celegans/', 'title': 'mel-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f374a66f-2b08-4116-92b5-7e6d84d0834f', 'status': 'released'} ce11 III 4763371 4798826 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF103IIT/, /files/ENCFF586MOL/ 1564213618 Kevin White, UChicago 0869a025a8be6ecee6e7e04641b3e98c https://www.encodeproject.org/files/ENCFF463JLO/@@download/ENCFF463JLO.bam released s3://encode-public/2016/10/05/f1f49010-a2ba-4233-93fa-96dbb7fa4751/ENCFF463JLO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF465NPE bigWig bigWig read-depth normalized signal ce10 ENCSR143RMG Control ChIP-seq /worm-donors/ENCDO002GDY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175634/'], '@type': ['Target', 'Item'], 'name': 'mel-28-celegans', 'label': 'mel-28', '@id': '/targets/mel-28-celegans/', 'title': 'mel-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f374a66f-2b08-4116-92b5-7e6d84d0834f', 'status': 'released'} ce11 III 4763371 4798826 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF343LLS/ 9948859 Kevin White, UChicago e25fa2a430159629a753e32a615d6a90 https://www.encodeproject.org/files/ENCFF465NPE/@@download/ENCFF465NPE.bigWig released s3://encode-public/2016/10/06/bf8e9073-33f8-4a3a-aba4-d15edc4a658d/ENCFF465NPE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF754EIW bigWig bigWig signal of unique reads ce10 ENCSR143RMG Control ChIP-seq /worm-donors/ENCDO002GDY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175634/'], '@type': ['Target', 'Item'], 'name': 'mel-28-celegans', 'label': 'mel-28', '@id': '/targets/mel-28-celegans/', 'title': 'mel-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f374a66f-2b08-4116-92b5-7e6d84d0834f', 'status': 'released'} ce11 III 4763371 4798826 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF343LLS/ 9994656 Kevin White, UChicago 00f8a6fc48f6728586594a5a590d95c4 https://www.encodeproject.org/files/ENCFF754EIW/@@download/ENCFF754EIW.bigWig released s3://encode-public/2016/10/06/077b4710-5e10-4608-bfe0-75ff24bb8508/ENCFF754EIW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF679LEO bigWig bigWig read-depth normalized signal ce11 ENCSR143RMG Control ChIP-seq /worm-donors/ENCDO002GDY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175634/'], '@type': ['Target', 'Item'], 'name': 'mel-28-celegans', 'label': 'mel-28', '@id': '/targets/mel-28-celegans/', 'title': 'mel-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f374a66f-2b08-4116-92b5-7e6d84d0834f', 'status': 'released'} ce11 III 4763371 4798826 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF463JLO/ 9948861 Kevin White, UChicago 2e22719de56ec1d0d1a879029c4a5079 https://www.encodeproject.org/files/ENCFF679LEO/@@download/ENCFF679LEO.bigWig released s3://encode-public/2016/10/06/a1383b5b-760e-42c2-8ba8-0d702cbd9df2/ENCFF679LEO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF544IRM bigWig bigWig signal of unique reads ce11 ENCSR143RMG Control ChIP-seq /worm-donors/ENCDO002GDY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175634/'], '@type': ['Target', 'Item'], 'name': 'mel-28-celegans', 'label': 'mel-28', '@id': '/targets/mel-28-celegans/', 'title': 'mel-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f374a66f-2b08-4116-92b5-7e6d84d0834f', 'status': 'released'} ce11 III 4763371 4798826 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF463JLO/ 9994659 Kevin White, UChicago d5959c20225accd7dd2a1d1ddfaf0ae9 https://www.encodeproject.org/files/ENCFF544IRM/@@download/ENCFF544IRM.bigWig released s3://encode-public/2016/10/06/d28c3f01-6ae7-43a9-805d-7c818b9c01cd/ENCFF544IRM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF412SXS fastq fastq reads ENCSR481GBB Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 788127506 Kevin White, UChicago e7e9fa120a4b742bdb276f54ecb2012d https://www.encodeproject.org/files/ENCFF412SXS/@@download/ENCFF412SXS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/09/0ec09738-9b81-40d8-a771-ed9d16820d5b/ENCFF412SXS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF240SOT bam bam alignments ce10 ENCSR481GBB Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF412SXS/ 931279803 Kevin White, UChicago 7ec55866314906342d0ed8b40c34beed https://www.encodeproject.org/files/ENCFF240SOT/@@download/ENCFF240SOT.bam released s3://encode-public/2016/05/10/443d797f-f649-42ac-9279-3865d50cbec2/ENCFF240SOT.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF805CSW bam bam alignments ce11 ENCSR481GBB Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF412SXS/ 932055476 Kevin White, UChicago 3b2f280c21e5c60416b5ba827e7d5a82 https://www.encodeproject.org/files/ENCFF805CSW/@@download/ENCFF805CSW.bam released s3://encode-public/2016/05/10/25c3fbf9-2907-43dd-90db-949d964c8ff9/ENCFF805CSW.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF376JHG bigWig bigWig read-depth normalized signal ce10 ENCSR481GBB Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF240SOT/ 9979076 Kevin White, UChicago 7f75be9a864dbd5b31c97ccf3f15b7bd https://www.encodeproject.org/files/ENCFF376JHG/@@download/ENCFF376JHG.bigWig released s3://encode-public/2016/05/11/e2bff9d6-bb09-46ae-b860-bba277b23a9d/ENCFF376JHG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF343JMU bigWig bigWig signal of unique reads ce10 ENCSR481GBB Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF240SOT/ 9972890 Kevin White, UChicago 243e9c42d01350fd3d38fefb60c9e833 https://www.encodeproject.org/files/ENCFF343JMU/@@download/ENCFF343JMU.bigWig released s3://encode-public/2016/05/11/b6f7c9df-ce3e-451a-b190-35aa56d918de/ENCFF343JMU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF097ITL bigWig bigWig signal of unique reads ce11 ENCSR481GBB Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF805CSW/ 9962065 Kevin White, UChicago a75e0f622bfd83f748e87be50d0abc75 https://www.encodeproject.org/files/ENCFF097ITL/@@download/ENCFF097ITL.bigWig released s3://encode-public/2016/05/11/6da25fd5-ab10-4f80-8b1f-ef7055a32ed4/ENCFF097ITL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF381KDY bigWig bigWig read-depth normalized signal ce11 ENCSR481GBB Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF805CSW/ 9960290 Kevin White, UChicago b5c67f225a953338694b9363f5002493 https://www.encodeproject.org/files/ENCFF381KDY/@@download/ENCFF381KDY.bigWig released s3://encode-public/2016/05/11/4bdb8443-e3d3-434f-bebc-7f8ce0a1d304/ENCFF381KDY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF026UWA fastq fastq reads ENCSR826RWT Control ChIP-seq /fly-donors/ENCDO334WUZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36393/'], '@type': ['Target', 'Item'], 'name': 'CG8632-dmelanogaster', 'label': 'CG8632', '@id': '/targets/CG8632-dmelanogaster/', 'title': 'CG8632 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be7f923a-3b29-4e35-844f-b338e87536fc', 'status': 'released'} dm3 2R 8539007 8560178 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 339007092 Kevin White, UChicago 3da52947566150e18c37c9e81208d6d6 https://www.encodeproject.org/files/ENCFF026UWA/@@download/ENCFF026UWA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/21/e532054c-edae-4367-8079-8b6e9244e7b7/ENCFF026UWA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF826PNM bam bam alignments dm3 ENCSR826RWT Control ChIP-seq /fly-donors/ENCDO334WUZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36393/'], '@type': ['Target', 'Item'], 'name': 'CG8632-dmelanogaster', 'label': 'CG8632', '@id': '/targets/CG8632-dmelanogaster/', 'title': 'CG8632 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be7f923a-3b29-4e35-844f-b338e87536fc', 'status': 'released'} dm3 2R 8539007 8560178 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF026UWA/ 408680757 Kevin White, UChicago 186221e2fa7cd590c497dce38c8c5a24 https://www.encodeproject.org/files/ENCFF826PNM/@@download/ENCFF826PNM.bam released s3://encode-public/2015/10/21/30edcd84-dba8-4b00-b90b-c59387f601cf/ENCFF826PNM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF318BGC bam bam alignments dm6 ENCSR826RWT Control ChIP-seq /fly-donors/ENCDO334WUZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36393/'], '@type': ['Target', 'Item'], 'name': 'CG8632-dmelanogaster', 'label': 'CG8632', '@id': '/targets/CG8632-dmelanogaster/', 'title': 'CG8632 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be7f923a-3b29-4e35-844f-b338e87536fc', 'status': 'released'} dm3 2R 8539007 8560178 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF026UWA/ 406424470 Kevin White, UChicago 72855cea89c8e1e8cf2a4637071cdec2 https://www.encodeproject.org/files/ENCFF318BGC/@@download/ENCFF318BGC.bam released s3://encode-public/2016/04/21/86e409c4-8beb-4dff-b825-3b19c45b63f5/ENCFF318BGC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF474IEJ bigWig bigWig signal of unique reads dm3 ENCSR826RWT Control ChIP-seq /fly-donors/ENCDO334WUZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36393/'], '@type': ['Target', 'Item'], 'name': 'CG8632-dmelanogaster', 'label': 'CG8632', '@id': '/targets/CG8632-dmelanogaster/', 'title': 'CG8632 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be7f923a-3b29-4e35-844f-b338e87536fc', 'status': 'released'} dm3 2R 8539007 8560178 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF826PNM/ 15026596 Kevin White, UChicago f8059f906f98787305d59fa61fa12157 https://www.encodeproject.org/files/ENCFF474IEJ/@@download/ENCFF474IEJ.bigWig released s3://encode-public/2016/07/02/de095b8e-a4d7-4ade-9ffe-d4cc7508d4ec/ENCFF474IEJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF663BOU bigWig bigWig read-depth normalized signal dm3 ENCSR826RWT Control ChIP-seq /fly-donors/ENCDO334WUZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36393/'], '@type': ['Target', 'Item'], 'name': 'CG8632-dmelanogaster', 'label': 'CG8632', '@id': '/targets/CG8632-dmelanogaster/', 'title': 'CG8632 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be7f923a-3b29-4e35-844f-b338e87536fc', 'status': 'released'} dm3 2R 8539007 8560178 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF826PNM/ 15005721 Kevin White, UChicago bb39e0e54d2d5e2f82321c2cc1d7478a https://www.encodeproject.org/files/ENCFF663BOU/@@download/ENCFF663BOU.bigWig released s3://encode-public/2016/07/02/989355c4-55ea-46c6-87d4-ccf3cc2b1cae/ENCFF663BOU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF906SYW bigWig bigWig signal of unique reads dm6 ENCSR826RWT Control ChIP-seq /fly-donors/ENCDO334WUZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36393/'], '@type': ['Target', 'Item'], 'name': 'CG8632-dmelanogaster', 'label': 'CG8632', '@id': '/targets/CG8632-dmelanogaster/', 'title': 'CG8632 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be7f923a-3b29-4e35-844f-b338e87536fc', 'status': 'released'} dm3 2R 8539007 8560178 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF318BGC/ 17071405 Kevin White, UChicago b4ce7fc85267ae6cf3d85f52801847c1 https://www.encodeproject.org/files/ENCFF906SYW/@@download/ENCFF906SYW.bigWig released s3://encode-public/2016/07/02/7585318e-9fec-4f87-a250-6387dbf25dc7/ENCFF906SYW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF709LJD bigWig bigWig read-depth normalized signal dm6 ENCSR826RWT Control ChIP-seq /fly-donors/ENCDO334WUZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36393/'], '@type': ['Target', 'Item'], 'name': 'CG8632-dmelanogaster', 'label': 'CG8632', '@id': '/targets/CG8632-dmelanogaster/', 'title': 'CG8632 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be7f923a-3b29-4e35-844f-b338e87536fc', 'status': 'released'} dm3 2R 8539007 8560178 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF318BGC/ 17042253 Kevin White, UChicago da9f8891ff1d1d4ab07a04af7c27bbe1 https://www.encodeproject.org/files/ENCFF709LJD/@@download/ENCFF709LJD.bigWig released s3://encode-public/2016/07/02/9c1815ba-a84e-4b34-ba34-841f86f46159/ENCFF709LJD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF280NZG bam bam alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF806LFR/, /files/ENCFF110MCL/ 836327718 ENCODE Processing Pipeline e02de6a57deb88466723688d66bcc4c5 https://www.encodeproject.org/files/ENCFF280NZG/@@download/ENCFF280NZG.bam released s3://encode-public/2020/09/29/78ff2e8b-7f6e-4f32-a33c-0cbea7250dce/ENCFF280NZG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF669AUD bam bam alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF877DLC/, /files/ENCFF110MCL/ 772455090 ENCODE Processing Pipeline 0a55cbdc9da644b5f56b7c228446e3eb https://www.encodeproject.org/files/ENCFF669AUD/@@download/ENCFF669AUD.bam released s3://encode-public/2020/09/29/b77b5f57-cf85-4fa1-97b1-b13e9af25bd3/ENCFF669AUD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF939LZF bam bam unfiltered alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF877DLC/, /files/ENCFF110MCL/ 917088320 ENCODE Processing Pipeline 4224a551261f1956c60537e64ccf2f5b https://www.encodeproject.org/files/ENCFF939LZF/@@download/ENCFF939LZF.bam released s3://encode-public/2020/09/29/979aba72-4050-4cf6-b6c5-6e863f8796c5/ENCFF939LZF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF806LFR fastq fastq reads ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 729575585 Tim Reddy, Duke 063d073da0df13963b81217bb880806e SRA:SRR5093143 https://www.encodeproject.org/files/ENCFF806LFR/@@download/ENCFF806LFR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/dcabbe6e-b303-4606-98a0-ee6a18d06d09/ENCFF806LFR.fastq.gz ENCFF136DNO fastq fastq reads ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 632418209 Tim Reddy, Duke f6a63a4f3dc9126bea1a56330369990e SRA:SRR5093145 https://www.encodeproject.org/files/ENCFF136DNO/@@download/ENCFF136DNO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/92d990b0-f5f9-480f-979f-d0296c4dcc73/ENCFF136DNO.fastq.gz ENCFF877DLC fastq fastq reads ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 668186214 Tim Reddy, Duke 9b8d5f1170def1c88e9cb48689d63f31 SRA:SRR5093144 https://www.encodeproject.org/files/ENCFF877DLC/@@download/ENCFF877DLC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/2c0359c1-3726-4707-ba4d-6a06d4d52b26/ENCFF877DLC.fastq.gz ENCFF813FWF bam bam alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF136DNO/ 704151030 Tim Reddy, Duke 81f4ed22d6f8524ef4ba3e6c1969f475 https://www.encodeproject.org/files/ENCFF813FWF/@@download/ENCFF813FWF.bam released s3://encode-public/2016/05/31/ddb2b091-68fb-45e4-a9b7-cf5277e3cd79/ENCFF813FWF.bam Lab custom GRCh38 archived ENCFF159VBZ bam bam alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF806LFR/ 799471013 Tim Reddy, Duke cb8fee2ebe8436201fe9fc294994b397 https://www.encodeproject.org/files/ENCFF159VBZ/@@download/ENCFF159VBZ.bam released s3://encode-public/2016/05/31/9c3ee6d7-61b8-4bed-aded-92fbc6e1a02a/ENCFF159VBZ.bam Lab custom GRCh38 archived ENCFF236QYF bam bam alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF877DLC/ 736626662 Tim Reddy, Duke 8e0499a4514ba8f49673479787f9b7d8 https://www.encodeproject.org/files/ENCFF236QYF/@@download/ENCFF236QYF.bam released s3://encode-public/2016/05/31/f809f9e6-e351-4424-bcbf-e1f258ab1a8b/ENCFF236QYF.bam Lab custom GRCh38 archived ENCFF171OCE bam bam alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF136DNO/, /files/ENCFF110MCL/ 734675802 ENCODE Processing Pipeline 94e2b0194c53cac4bb74fa53f8aa81f5 https://www.encodeproject.org/files/ENCFF171OCE/@@download/ENCFF171OCE.bam released s3://encode-public/2020/09/29/77dae8bd-621e-4641-ad89-83e39746a6cc/ENCFF171OCE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF827MLC bam bam unfiltered alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF136DNO/, /files/ENCFF110MCL/ 866134180 ENCODE Processing Pipeline 1dcaf6f5db950e4d9ae2e855a6dd72aa https://www.encodeproject.org/files/ENCFF827MLC/@@download/ENCFF827MLC.bam released s3://encode-public/2020/09/29/5a795fba-30c6-45ce-a453-fbbae775737d/ENCFF827MLC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF832QNR bam bam unfiltered alignments GRCh38 ENCSR838ZAU Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF806LFR/, /files/ENCFF110MCL/ 991508017 ENCODE Processing Pipeline 51b51844efb8c9c3fcf64813aca1fe2f https://www.encodeproject.org/files/ENCFF832QNR/@@download/ENCFF832QNR.bam released s3://encode-public/2020/09/29/9c8f8919-5b76-4f06-a693-7fe8ceddcb18/ENCFF832QNR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF851SJN fastq fastq reads ENCSR782YFF Control ChIP-seq /fly-donors/ENCDO575YVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43156/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m3-HLH-dmelanogaster', 'label': 'E(spl)m3-HLH', '@id': '/targets/E(spl)m3-HLH-dmelanogaster/', 'title': 'E(spl)m3-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '55f7667f-0a91-4d98-8625-5c561c926f4e', 'status': 'released'} dm3 3R 26007152 26028011 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 729950631 Kevin White, UChicago 8151e85b9847b9a50b3ed0b28690d0e5 https://www.encodeproject.org/files/ENCFF851SJN/@@download/ENCFF851SJN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/200de191-d39e-4b04-90a9-52cff6c6c168/ENCFF851SJN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF724HJP bam bam alignments dm3 ENCSR782YFF Control ChIP-seq /fly-donors/ENCDO575YVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43156/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m3-HLH-dmelanogaster', 'label': 'E(spl)m3-HLH', '@id': '/targets/E(spl)m3-HLH-dmelanogaster/', 'title': 'E(spl)m3-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '55f7667f-0a91-4d98-8625-5c561c926f4e', 'status': 'released'} dm3 3R 26007152 26028011 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF851SJN/ 895692204 Kevin White, UChicago 3436581c7423921f0d39d2651a988428 https://www.encodeproject.org/files/ENCFF724HJP/@@download/ENCFF724HJP.bam released s3://encode-public/2016/04/11/58a150c1-a541-4f90-b1d9-dab569533905/ENCFF724HJP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF258VNJ bigWig bigWig read-depth normalized signal dm3 ENCSR782YFF Control ChIP-seq /fly-donors/ENCDO575YVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43156/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m3-HLH-dmelanogaster', 'label': 'E(spl)m3-HLH', '@id': '/targets/E(spl)m3-HLH-dmelanogaster/', 'title': 'E(spl)m3-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '55f7667f-0a91-4d98-8625-5c561c926f4e', 'status': 'released'} dm3 3R 26007152 26028011 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF724HJP/ 15356943 Kevin White, UChicago e02c0e18caf1fd9eff0bd962d26419cd https://www.encodeproject.org/files/ENCFF258VNJ/@@download/ENCFF258VNJ.bigWig released s3://encode-public/2016/04/11/3ead1ca4-2509-4498-b111-0ea8b722a3a8/ENCFF258VNJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF744GDT bigWig bigWig signal of unique reads dm3 ENCSR782YFF Control ChIP-seq /fly-donors/ENCDO575YVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43156/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m3-HLH-dmelanogaster', 'label': 'E(spl)m3-HLH', '@id': '/targets/E(spl)m3-HLH-dmelanogaster/', 'title': 'E(spl)m3-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '55f7667f-0a91-4d98-8625-5c561c926f4e', 'status': 'released'} dm3 3R 26007152 26028011 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF724HJP/ 15334142 Kevin White, UChicago 8618bb85cdfb9676cd0c530a6b67a3a1 https://www.encodeproject.org/files/ENCFF744GDT/@@download/ENCFF744GDT.bigWig released s3://encode-public/2016/04/11/828f0790-8d8c-4352-abb0-a464684cbb41/ENCFF744GDT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF760ICF bam bam alignments dm6 ENCSR782YFF Control ChIP-seq /fly-donors/ENCDO575YVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43156/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m3-HLH-dmelanogaster', 'label': 'E(spl)m3-HLH', '@id': '/targets/E(spl)m3-HLH-dmelanogaster/', 'title': 'E(spl)m3-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '55f7667f-0a91-4d98-8625-5c561c926f4e', 'status': 'released'} dm3 3R 26007152 26028011 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF851SJN/ 889158644 Kevin White, UChicago d6d57fb4f317151f4d1f831ab31ecee4 https://www.encodeproject.org/files/ENCFF760ICF/@@download/ENCFF760ICF.bam released s3://encode-public/2016/04/21/3351ea1e-a5e2-4acd-a346-bea8dba45a2b/ENCFF760ICF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF970OAE bigWig bigWig read-depth normalized signal dm6 ENCSR782YFF Control ChIP-seq /fly-donors/ENCDO575YVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43156/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m3-HLH-dmelanogaster', 'label': 'E(spl)m3-HLH', '@id': '/targets/E(spl)m3-HLH-dmelanogaster/', 'title': 'E(spl)m3-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '55f7667f-0a91-4d98-8625-5c561c926f4e', 'status': 'released'} dm3 3R 26007152 26028011 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF760ICF/ 17433602 Kevin White, UChicago 88ea0e4af373f42c93f0e04075d1e9af https://www.encodeproject.org/files/ENCFF970OAE/@@download/ENCFF970OAE.bigWig released s3://encode-public/2016/06/21/de182c0e-2351-491a-bebf-38c853dca8e6/ENCFF970OAE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF168OZN bigWig bigWig signal of unique reads dm6 ENCSR782YFF Control ChIP-seq /fly-donors/ENCDO575YVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43156/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m3-HLH-dmelanogaster', 'label': 'E(spl)m3-HLH', '@id': '/targets/E(spl)m3-HLH-dmelanogaster/', 'title': 'E(spl)m3-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '55f7667f-0a91-4d98-8625-5c561c926f4e', 'status': 'released'} dm3 3R 26007152 26028011 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF760ICF/ 17393094 Kevin White, UChicago 20abd20810a398bb8490847fe17ecc81 https://www.encodeproject.org/files/ENCFF168OZN/@@download/ENCFF168OZN.bigWig released s3://encode-public/2016/06/21/91d6ab80-7ded-4e61-a6f7-05c25465afa0/ENCFF168OZN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF382SLK fastq fastq reads ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 157327984 Kevin White, UChicago 3958651f479fb69bbc7f8687e3b2fdb6 https://www.encodeproject.org/files/ENCFF382SLK/@@download/ENCFF382SLK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF285KYY/, /files/ENCFF899PMS/ released s3://encode-public/2018/01/09/ce142a88-c6c1-4c46-9736-1d3b80c5e933/ENCFF382SLK.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF620PYT fastq fastq reads ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 197139229 Kevin White, UChicago 1ac9b38fbc25f18ee8d5c6e46a3af2c5 https://www.encodeproject.org/files/ENCFF620PYT/@@download/ENCFF620PYT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF285KYY/, /files/ENCFF899PMS/ released s3://encode-public/2018/01/09/24a59587-7201-47a3-b4e8-542dcf64420c/ENCFF620PYT.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF187ZSB bam bam alignments ce10 ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF382SLK/, /files/ENCFF620PYT/, /files/ENCFF987UMF/ 503065361 Kevin White, UChicago 39df0b274044f53972f4316bb134330f https://www.encodeproject.org/files/ENCFF187ZSB/@@download/ENCFF187ZSB.bam released s3://encode-public/2018/01/09/dfec2b78-f76a-40a2-914a-6e18677bbf72/ENCFF187ZSB.bam Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF445DCW bam bam alignments ce11 ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF382SLK/, /files/ENCFF620PYT/, /files/ENCFF586MOL/ 503737943 Kevin White, UChicago ac2b4af94204b533e6d3acc58169612a https://www.encodeproject.org/files/ENCFF445DCW/@@download/ENCFF445DCW.bam released s3://encode-public/2018/01/09/72c8812a-a8d6-4d04-b9bc-5c262a022b66/ENCFF445DCW.bam Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF397LVD bigWig bigWig read-depth normalized signal ce10 ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF187ZSB/ 10066050 Kevin White, UChicago f5066e47929f7915f4aaa0fbfa2e1ca3 https://www.encodeproject.org/files/ENCFF397LVD/@@download/ENCFF397LVD.bigWig released s3://encode-public/2018/01/09/7c0eab2e-3938-4f39-b579-ee2da399ba48/ENCFF397LVD.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF038GZP bigWig bigWig signal of unique reads ce10 ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF187ZSB/ 10013538 Kevin White, UChicago e913d391e7613889cebad34d52ff0495 https://www.encodeproject.org/files/ENCFF038GZP/@@download/ENCFF038GZP.bigWig released s3://encode-public/2018/01/09/e60e6800-0a45-4e16-b319-173fd01ec404/ENCFF038GZP.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF775PNU bigWig bigWig read-depth normalized signal ce11 ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF445DCW/ 10065519 Kevin White, UChicago 3b2697445a8568fa73b632c2907767d3 https://www.encodeproject.org/files/ENCFF775PNU/@@download/ENCFF775PNU.bigWig released s3://encode-public/2018/01/09/edab6e48-be9c-4bd5-99ac-891fa4a3c4a7/ENCFF775PNU.bigWig Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF618AUZ bigWig bigWig signal of unique reads ce11 ENCSR029WBT Control ChIP-seq /worm-donors/ENCDO583CKI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF445DCW/ 10011548 Kevin White, UChicago d94c47cd659e7ed4d66b6409b9478821 https://www.encodeproject.org/files/ENCFF618AUZ/@@download/ENCFF618AUZ.bigWig released s3://encode-public/2018/01/09/7843f2ed-f92f-42c6-9917-21880adb5c13/ENCFF618AUZ.bigWig Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF535TQI fastq fastq reads ENCSR074VTY Control ChIP-seq /fly-donors/ENCDO558MME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41073/'], '@type': ['Target', 'Item'], 'name': 'E(var)3-9-dmelanogaster', 'label': 'E(var)3-9', '@id': '/targets/E(var)3-9-dmelanogaster/', 'title': 'E(var)3-9 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '5c644d99-1bb3-4c9b-bf5c-44ce3642a668', 'status': 'released'} dm3 3R 4808951 4830592 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 501106510 Kevin White, UChicago f8d041fdfa9cf80c081e0c92b19df6d3 https://www.encodeproject.org/files/ENCFF535TQI/@@download/ENCFF535TQI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/21/69f3bcad-5bc5-406a-9f3e-d94eff6cc352/ENCFF535TQI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF974XLQ bam bam alignments dm3 ENCSR074VTY Control ChIP-seq /fly-donors/ENCDO558MME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41073/'], '@type': ['Target', 'Item'], 'name': 'E(var)3-9-dmelanogaster', 'label': 'E(var)3-9', '@id': '/targets/E(var)3-9-dmelanogaster/', 'title': 'E(var)3-9 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '5c644d99-1bb3-4c9b-bf5c-44ce3642a668', 'status': 'released'} dm3 3R 4808951 4830592 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF535TQI/ 615115435 Kevin White, UChicago b7e03ab3a2c182b8214c198dcb73a14b https://www.encodeproject.org/files/ENCFF974XLQ/@@download/ENCFF974XLQ.bam released s3://encode-public/2015/10/21/1e18a439-16cb-42ec-8001-2654dcd61b7f/ENCFF974XLQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF279NEO bigWig bigWig signal of unique reads dm3 ENCSR074VTY Control ChIP-seq /fly-donors/ENCDO558MME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41073/'], '@type': ['Target', 'Item'], 'name': 'E(var)3-9-dmelanogaster', 'label': 'E(var)3-9', '@id': '/targets/E(var)3-9-dmelanogaster/', 'title': 'E(var)3-9 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '5c644d99-1bb3-4c9b-bf5c-44ce3642a668', 'status': 'released'} dm3 3R 4808951 4830592 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF974XLQ/ 15414960 Kevin White, UChicago f3e6cbcfe1bda09d28a22c2bf2396d88 https://www.encodeproject.org/files/ENCFF279NEO/@@download/ENCFF279NEO.bigWig released s3://encode-public/2015/10/21/98d43e17-7796-4033-8227-74b5cea4bf13/ENCFF279NEO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF934VJE bigWig bigWig read-depth normalized signal dm3 ENCSR074VTY Control ChIP-seq /fly-donors/ENCDO558MME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41073/'], '@type': ['Target', 'Item'], 'name': 'E(var)3-9-dmelanogaster', 'label': 'E(var)3-9', '@id': '/targets/E(var)3-9-dmelanogaster/', 'title': 'E(var)3-9 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '5c644d99-1bb3-4c9b-bf5c-44ce3642a668', 'status': 'released'} dm3 3R 4808951 4830592 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF974XLQ/ 15338596 Kevin White, UChicago 1454f2c6d3524ff6d2b2ac329655d2dc https://www.encodeproject.org/files/ENCFF934VJE/@@download/ENCFF934VJE.bigWig released s3://encode-public/2015/10/21/2c8483db-3f73-4fe5-9d7a-5ceb5fc06311/ENCFF934VJE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF563OFN bam bam alignments dm6 ENCSR074VTY Control ChIP-seq /fly-donors/ENCDO558MME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41073/'], '@type': ['Target', 'Item'], 'name': 'E(var)3-9-dmelanogaster', 'label': 'E(var)3-9', '@id': '/targets/E(var)3-9-dmelanogaster/', 'title': 'E(var)3-9 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '5c644d99-1bb3-4c9b-bf5c-44ce3642a668', 'status': 'released'} dm3 3R 4808951 4830592 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF535TQI/ 609943508 Kevin White, UChicago 1c1d5eb4433a951b6bd1ffd2f83d3bbc https://www.encodeproject.org/files/ENCFF563OFN/@@download/ENCFF563OFN.bam released s3://encode-public/2016/04/21/9553815d-3086-485c-90d3-96dbda43ecf5/ENCFF563OFN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF069DWR bigWig bigWig read-depth normalized signal dm6 ENCSR074VTY Control ChIP-seq /fly-donors/ENCDO558MME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41073/'], '@type': ['Target', 'Item'], 'name': 'E(var)3-9-dmelanogaster', 'label': 'E(var)3-9', '@id': '/targets/E(var)3-9-dmelanogaster/', 'title': 'E(var)3-9 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '5c644d99-1bb3-4c9b-bf5c-44ce3642a668', 'status': 'released'} dm3 3R 4808951 4830592 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF563OFN/ 17379640 Kevin White, UChicago 65709a71bdc05277d09fe21d62e24bd3 https://www.encodeproject.org/files/ENCFF069DWR/@@download/ENCFF069DWR.bigWig released s3://encode-public/2016/06/21/533457a9-8311-4de9-9f2e-e498db97539a/ENCFF069DWR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF127MIG bigWig bigWig signal of unique reads dm6 ENCSR074VTY Control ChIP-seq /fly-donors/ENCDO558MME/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41073/'], '@type': ['Target', 'Item'], 'name': 'E(var)3-9-dmelanogaster', 'label': 'E(var)3-9', '@id': '/targets/E(var)3-9-dmelanogaster/', 'title': 'E(var)3-9 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '5c644d99-1bb3-4c9b-bf5c-44ce3642a668', 'status': 'released'} dm3 3R 4808951 4830592 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF563OFN/ 17500583 Kevin White, UChicago 12f4b89938f2bbdf6b234b47fea54276 https://www.encodeproject.org/files/ENCFF127MIG/@@download/ENCFF127MIG.bigWig released s3://encode-public/2016/06/21/04d06636-c478-49d8-aeee-26398e74bc2b/ENCFF127MIG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF754ZHA fastq fastq reads ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1489978646 Kevin White, UChicago 0e46fa65dc8f99ad24ea0e1e3d8091c5 https://www.encodeproject.org/files/ENCFF754ZHA/@@download/ENCFF754ZHA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/23/00b749d9-ca41-487d-9519-7e8511badbe2/ENCFF754ZHA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF070ENB fastq fastq reads ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 2 2_1 50 single-ended 1489978646 Kevin White, UChicago feb3f3c7b67bf1206efcb50ba7d9a65d https://www.encodeproject.org/files/ENCFF070ENB/@@download/ENCFF070ENB.fastq.gz Illumina HiSeq 2500 /files/ENCFF868DTM/ released s3://encode-public/2016/08/23/b8ff9679-0f40-4d92-a4de-10fa59e7be62/ENCFF070ENB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF859CSL bam bam alignments dm3 ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF754ZHA/ 1853132200 Kevin White, UChicago 52daa095fb456fd96695a16cdd8c58cc https://www.encodeproject.org/files/ENCFF859CSL/@@download/ENCFF859CSL.bam released s3://encode-public/2017/06/19/19a2acc0-9ee6-4aa0-964a-9f5fd119e484/ENCFF859CSL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF784HCW bam bam alignments dm6 ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF754ZHA/ 1837881666 Kevin White, UChicago b3f4da7884ffa703e92513d173ce84db https://www.encodeproject.org/files/ENCFF784HCW/@@download/ENCFF784HCW.bam released s3://encode-public/2017/06/28/f9e75431-f9ab-4da5-97cb-907f4df276d3/ENCFF784HCW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF508YVP bigWig bigWig signal of unique reads dm3 ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF859CSL/ 15953593 Kevin White, UChicago 39ef52ae48d6a79fb7e29430935e93c9 https://www.encodeproject.org/files/ENCFF508YVP/@@download/ENCFF508YVP.bigWig released s3://encode-public/2017/06/29/5e9a4eae-db43-45cd-af8c-4dde40716cbd/ENCFF508YVP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF855PFU bigWig bigWig read-depth normalized signal dm3 ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF859CSL/ 15992267 Kevin White, UChicago ffc1c9b39fbb01c520d9751094bdcbcf https://www.encodeproject.org/files/ENCFF855PFU/@@download/ENCFF855PFU.bigWig released s3://encode-public/2017/06/29/8a9a25fc-b7f9-4ab3-9667-1a269b879c11/ENCFF855PFU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF955OCV bigWig bigWig read-depth normalized signal dm6 ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF784HCW/ 17942328 Kevin White, UChicago 5f3cbc4b08eb3c796e2a3f1c5c03c289 https://www.encodeproject.org/files/ENCFF955OCV/@@download/ENCFF955OCV.bigWig released s3://encode-public/2017/06/30/e4480164-8eff-4814-8f9e-a73a7fb90b02/ENCFF955OCV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF119AWK bigWig bigWig signal of unique reads dm6 ENCSR302GPM Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF784HCW/ 17902361 Kevin White, UChicago ec239c4bd71370712f3fa13124df2059 https://www.encodeproject.org/files/ENCFF119AWK/@@download/ENCFF119AWK.bigWig released s3://encode-public/2017/06/30/5aed6ffb-bd53-49e3-83de-4a07ffbc4575/ENCFF119AWK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF319AWI fastq fastq reads ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 single-ended 1207146982 Xiang-Dong Fu, UCSD 69e37cb2fdc43be87004ab05484a57a5 SRA:SRR6212647 https://www.encodeproject.org/files/ENCFF319AWI/@@download/ENCFF319AWI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/03/21/c7a791ba-e40c-4ef9-b533-dacd1fae871d/ENCFF319AWI.fastq.gz low read length ENCFF386QNN fastq fastq reads ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 single-ended 931584217 Xiang-Dong Fu, UCSD c8dc9fd3dce9ce42bf7576b2d06ff377 SRA:SRR6212646 https://www.encodeproject.org/files/ENCFF386QNN/@@download/ENCFF386QNN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/03/21/7c7acadd-6b04-468a-b3d1-c937c5706a68/ENCFF386QNN.fastq.gz low read length ENCFF431FEY bam bam unfiltered alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF386QNN/ 1323178021 ENCODE Processing Pipeline f5b9678bd6d0d5e6ca0b875f96ba4a34 https://www.encodeproject.org/files/ENCFF431FEY/@@download/ENCFF431FEY.bam released s3://encode-public/2016/06/25/149e8b2e-e98f-460d-b7d1-9939359507f0/ENCFF431FEY.bam ENCODE3 GRCh38 archived low read length ENCFF427ZMQ bam bam unfiltered alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF319AWI/ 1716597372 ENCODE Processing Pipeline d18ac928feebdcda83bb0e5cb50c958d https://www.encodeproject.org/files/ENCFF427ZMQ/@@download/ENCFF427ZMQ.bam released s3://encode-public/2016/06/25/f29ddf29-6ebf-432f-9762-8b2bd7bc187f/ENCFF427ZMQ.bam ENCODE3 GRCh38 archived low read length ENCFF619YOF bam bam alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF386QNN/ 1005396748 ENCODE Processing Pipeline c9d2ae08ced2e8b7d4971af7bb76346d https://www.encodeproject.org/files/ENCFF619YOF/@@download/ENCFF619YOF.bam released s3://encode-public/2016/06/25/84012e60-d865-40df-8f4b-99854e028d2f/ENCFF619YOF.bam ENCODE3 GRCh38 archived low read length ENCFF107PCV bam bam alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF319AWI/ 1294574531 ENCODE Processing Pipeline 67fd1f8cf7003b5e34fa7340d263db8a https://www.encodeproject.org/files/ENCFF107PCV/@@download/ENCFF107PCV.bam released s3://encode-public/2016/06/25/0b3b1275-b832-485d-bd8c-35d499a9ac50/ENCFF107PCV.bam ENCODE3 GRCh38 archived low read length ENCFF086JZA bam bam unfiltered alignments hg19 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF386QNN/ 1318228586 ENCODE Processing Pipeline c42ab65b978224552c79ae8bb32fa519 https://www.encodeproject.org/files/ENCFF086JZA/@@download/ENCFF086JZA.bam released s3://encode-public/2017/02/10/bcc962b8-b3cc-48cb-b880-c51eb8d9ccc0/ENCFF086JZA.bam ENCODE3 hg19 archived low read length ENCFF217UCE bam bam alignments hg19 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF386QNN/ 1006291142 ENCODE Processing Pipeline 0060c302f6e56be09e455a3c27f94157 https://www.encodeproject.org/files/ENCFF217UCE/@@download/ENCFF217UCE.bam released s3://encode-public/2017/02/10/fd2ff93f-cca8-4141-8e4f-8a1bd6dd8120/ENCFF217UCE.bam ENCODE3 hg19 archived low read length ENCFF074VCH bam bam unfiltered alignments hg19 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF319AWI/ 1709685253 ENCODE Processing Pipeline a1ac67ec354c8bbce7e9153be24c2782 https://www.encodeproject.org/files/ENCFF074VCH/@@download/ENCFF074VCH.bam released s3://encode-public/2017/02/10/bd6b849b-afea-49bc-a1e0-7646a4b01339/ENCFF074VCH.bam ENCODE3 hg19 archived low read length ENCFF825CNQ bam bam alignments hg19 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF319AWI/ 1295649367 ENCODE Processing Pipeline ec6f76de44a9a032d350cfe0ccc8f1be https://www.encodeproject.org/files/ENCFF825CNQ/@@download/ENCFF825CNQ.bam released s3://encode-public/2017/02/10/17aab98b-38ed-451d-8db6-f3d5370a8f6d/ENCFF825CNQ.bam ENCODE3 hg19 archived low read length ENCFF519NYC bam bam alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF386QNN/, /files/ENCFF110MCL/ 1049085520 ENCODE Processing Pipeline 52bd7a712cea81bf78b5f2e3720b7753 https://www.encodeproject.org/files/ENCFF519NYC/@@download/ENCFF519NYC.bam released s3://encode-public/2020/10/27/3aa3cf59-11ba-4b0c-8e7c-c7245116eba0/ENCFF519NYC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF630RVM bam bam unfiltered alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF319AWI/, /files/ENCFF110MCL/ 1706516834 ENCODE Processing Pipeline c3a15277c28dac93578ba0741f772d2a https://www.encodeproject.org/files/ENCFF630RVM/@@download/ENCFF630RVM.bam released s3://encode-public/2020/10/27/7896fa80-70f6-4c90-995a-c75785cbcfd8/ENCFF630RVM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF773YEE bam bam unfiltered alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF386QNN/, /files/ENCFF110MCL/ 1318189386 ENCODE Processing Pipeline c7426c06c83f026f50cae8f1e91f10a0 https://www.encodeproject.org/files/ENCFF773YEE/@@download/ENCFF773YEE.bam released s3://encode-public/2020/10/27/7404fd8e-5e43-491c-9744-b84bd1fe6761/ENCFF773YEE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF668JET bam bam alignments GRCh38 ENCSR032EZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF319AWI/, /files/ENCFF110MCL/ 1359828820 ENCODE Processing Pipeline 33ca4fa7072a54c6195499328e26d35f https://www.encodeproject.org/files/ENCFF668JET/@@download/ENCFF668JET.bam released s3://encode-public/2020/10/27/dbebcd15-59d4-49dc-b65f-02371d2e31dc/ENCFF668JET.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF817SAJ fastq fastq reads ENCSR704QBF Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1952977658 Bradley Bernstein, Broad 08e9f592b0ee37fea3a841d517a69f01 SRA:SRR13804821 https://www.encodeproject.org/files/ENCFF817SAJ/@@download/ENCFF817SAJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/b636d14d-e774-4deb-a33c-805a7c4df1c0/ENCFF817SAJ.fastq.gz ENCFF920GLC fastq fastq reads ENCSR704QBF Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1933308892 Bradley Bernstein, Broad 5c7d69fe328725eead6ee07affe80c20 SRA:SRR13804822 https://www.encodeproject.org/files/ENCFF920GLC/@@download/ENCFF920GLC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/80d2c5f5-3d2e-4754-9aae-f904da3b7f46/ENCFF920GLC.fastq.gz ENCFF233YHN bam bam unfiltered alignments GRCh38 ENCSR704QBF Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF817SAJ/, /files/ENCFF920GLC/ 3783741914 ENCODE Processing Pipeline 1cc1eb3b579c9905f3e1ae3a3c83532f https://www.encodeproject.org/files/ENCFF233YHN/@@download/ENCFF233YHN.bam released s3://encode-public/2020/07/19/42d5916c-8a08-4119-b8fa-863093f6b64a/ENCFF233YHN.bam ENCODE4 v1.5.0 GRCh38 released ENCFF490MWV bam bam alignments GRCh38 ENCSR704QBF Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF817SAJ/, /files/ENCFF920GLC/ 3038171534 ENCODE Processing Pipeline 3e609e3435997de12612a4e4b02a0c76 https://www.encodeproject.org/files/ENCFF490MWV/@@download/ENCFF490MWV.bam released s3://encode-public/2020/07/19/0acc04a2-0b9a-458e-a1a5-1d36df6ec1e1/ENCFF490MWV.bam ENCODE4 v1.5.0 GRCh38 released ENCFF254SYC fastq fastq reads ENCSR748FVE Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 843808753 Kevin White, UChicago 65e2c14b3d9095dee326fbf6208fbb40 https://www.encodeproject.org/files/ENCFF254SYC/@@download/ENCFF254SYC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/2fe95eaf-1df4-482b-b86d-5bf32d85c44f/ENCFF254SYC.fastq.gz ENCFF119GJD bam bam alignments dm3 ENCSR748FVE Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF254SYC/ 1062614029 Kevin White, UChicago 65554822397fe1d8b45e84885cf33dc0 https://www.encodeproject.org/files/ENCFF119GJD/@@download/ENCFF119GJD.bam released s3://encode-public/2017/06/18/f4eb5c4f-e68a-438a-b694-1467139a6e19/ENCFF119GJD.bam Lab custom dm3 archived ENCFF143WSO bam bam alignments dm6 ENCSR748FVE Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF254SYC/ 1051453306 Kevin White, UChicago f1a8c37acc2c65aabd4e5ea479e50b65 https://www.encodeproject.org/files/ENCFF143WSO/@@download/ENCFF143WSO.bam released s3://encode-public/2017/06/28/adbbdf7f-2b52-4934-92db-0478c5bed089/ENCFF143WSO.bam Lab custom dm6 released ENCFF601CCE bigWig bigWig signal of unique reads dm3 ENCSR748FVE Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF119GJD/ 15454822 Kevin White, UChicago aed9d159167ef7530a30ad0fa9fcae96 https://www.encodeproject.org/files/ENCFF601CCE/@@download/ENCFF601CCE.bigWig released s3://encode-public/2017/06/29/fecb4816-a5c8-4461-8321-f9bf2c395bf7/ENCFF601CCE.bigWig Lab custom dm3 archived ENCFF598MWJ bigWig bigWig read-depth normalized signal dm3 ENCSR748FVE Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF119GJD/ 15465386 Kevin White, UChicago f13d2f56be9529d5f49af03369b4160f https://www.encodeproject.org/files/ENCFF598MWJ/@@download/ENCFF598MWJ.bigWig released s3://encode-public/2017/06/29/d3f4afc5-3faf-45f0-b4f1-baa3cc8a8198/ENCFF598MWJ.bigWig Lab custom dm3 archived ENCFF785HVI bigWig bigWig read-depth normalized signal dm6 ENCSR748FVE Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF143WSO/ 17603897 Kevin White, UChicago bc112a2b9000835383d8815a4aa31c37 https://www.encodeproject.org/files/ENCFF785HVI/@@download/ENCFF785HVI.bigWig released s3://encode-public/2017/06/29/357cb172-af62-4226-b43d-64a07850c4be/ENCFF785HVI.bigWig Lab custom dm6 released ENCFF360JIB bigWig bigWig signal of unique reads dm6 ENCSR748FVE Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF143WSO/ 17598633 Kevin White, UChicago cad6a3b20c612aa0efb7e60093b98e6e https://www.encodeproject.org/files/ENCFF360JIB/@@download/ENCFF360JIB.bigWig released s3://encode-public/2017/06/30/f263d2d7-414d-4cb5-8eba-0f60cc54214c/ENCFF360JIB.bigWig Lab custom dm6 released ENCFF347UUC fastq fastq reads ENCSR862BLF Control ChIP-seq /worm-donors/ENCDO677SGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176517/'], '@type': ['Target', 'Item'], 'name': 'athp-1-celegans', 'label': 'athp-1', '@id': '/targets/athp-1-celegans/', 'title': 'athp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bfc259ba-cd1f-49ec-9ee0-1716e9e01f59', 'status': 'released'} ce11 III 10870917 10896750 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1870856669 Kevin White, UChicago a01c13721b862391bf07d546034dd061 https://www.encodeproject.org/files/ENCFF347UUC/@@download/ENCFF347UUC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/92429efd-2360-4d44-90ef-8fd4ce9c1a56/ENCFF347UUC.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF861DRL bam bam alignments ce10 ENCSR862BLF Control ChIP-seq /worm-donors/ENCDO677SGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176517/'], '@type': ['Target', 'Item'], 'name': 'athp-1-celegans', 'label': 'athp-1', '@id': '/targets/athp-1-celegans/', 'title': 'athp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bfc259ba-cd1f-49ec-9ee0-1716e9e01f59', 'status': 'released'} ce11 III 10870917 10896750 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF347UUC/ 2487571517 Kevin White, UChicago 1fc3bff024edfcb02de4854920e96bac https://www.encodeproject.org/files/ENCFF861DRL/@@download/ENCFF861DRL.bam released s3://encode-public/2017/10/06/9d74accb-4965-455e-a874-8a1b71d925ba/ENCFF861DRL.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF237WGA bam bam alignments ce11 ENCSR862BLF Control ChIP-seq /worm-donors/ENCDO677SGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176517/'], '@type': ['Target', 'Item'], 'name': 'athp-1-celegans', 'label': 'athp-1', '@id': '/targets/athp-1-celegans/', 'title': 'athp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bfc259ba-cd1f-49ec-9ee0-1716e9e01f59', 'status': 'released'} ce11 III 10870917 10896750 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF347UUC/ 2489615873 Kevin White, UChicago e00389b72cfaab1afe59eb96a160ee7f https://www.encodeproject.org/files/ENCFF237WGA/@@download/ENCFF237WGA.bam released s3://encode-public/2017/10/06/175bc37e-4e24-4d47-bfb9-851d0106537a/ENCFF237WGA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF726ZTG bigWig bigWig signal of unique reads ce10 ENCSR862BLF Control ChIP-seq /worm-donors/ENCDO677SGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176517/'], '@type': ['Target', 'Item'], 'name': 'athp-1-celegans', 'label': 'athp-1', '@id': '/targets/athp-1-celegans/', 'title': 'athp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bfc259ba-cd1f-49ec-9ee0-1716e9e01f59', 'status': 'released'} ce11 III 10870917 10896750 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF861DRL/ 9909079 Kevin White, UChicago 563a0ae598a72016034cb2f6f34ea41e https://www.encodeproject.org/files/ENCFF726ZTG/@@download/ENCFF726ZTG.bigWig released s3://encode-public/2017/10/09/706b89d8-0f2e-410a-a487-b15b8b1bf693/ENCFF726ZTG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF253MUP bigWig bigWig read-depth normalized signal ce10 ENCSR862BLF Control ChIP-seq /worm-donors/ENCDO677SGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176517/'], '@type': ['Target', 'Item'], 'name': 'athp-1-celegans', 'label': 'athp-1', '@id': '/targets/athp-1-celegans/', 'title': 'athp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bfc259ba-cd1f-49ec-9ee0-1716e9e01f59', 'status': 'released'} ce11 III 10870917 10896750 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF861DRL/ 9933286 Kevin White, UChicago e6310c0387ab69687bc361b2c0cc30c5 https://www.encodeproject.org/files/ENCFF253MUP/@@download/ENCFF253MUP.bigWig released s3://encode-public/2017/10/09/c8c0f13b-6e8e-41d1-b753-5a2c631fa078/ENCFF253MUP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF290YPW bigWig bigWig read-depth normalized signal ce11 ENCSR862BLF Control ChIP-seq /worm-donors/ENCDO677SGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176517/'], '@type': ['Target', 'Item'], 'name': 'athp-1-celegans', 'label': 'athp-1', '@id': '/targets/athp-1-celegans/', 'title': 'athp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bfc259ba-cd1f-49ec-9ee0-1716e9e01f59', 'status': 'released'} ce11 III 10870917 10896750 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF237WGA/ 9923998 Kevin White, UChicago 919e34241cd3b78d7b129e9239fe92f2 https://www.encodeproject.org/files/ENCFF290YPW/@@download/ENCFF290YPW.bigWig released s3://encode-public/2017/10/09/b8ddc224-6f89-4723-9da9-d60dd6eaded3/ENCFF290YPW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF722TKP bigWig bigWig signal of unique reads ce11 ENCSR862BLF Control ChIP-seq /worm-donors/ENCDO677SGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176517/'], '@type': ['Target', 'Item'], 'name': 'athp-1-celegans', 'label': 'athp-1', '@id': '/targets/athp-1-celegans/', 'title': 'athp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bfc259ba-cd1f-49ec-9ee0-1716e9e01f59', 'status': 'released'} ce11 III 10870917 10896750 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF237WGA/ 9903682 Kevin White, UChicago ddae599cd17cfbd57aac95526f0d6176 https://www.encodeproject.org/files/ENCFF722TKP/@@download/ENCFF722TKP.bigWig released s3://encode-public/2017/10/09/f74a55d6-126a-4d7e-bd1f-c02706dfac1e/ENCFF722TKP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF285KYY fastq fastq reads ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 159584302 Kevin White, UChicago 4a2c77c70a5d30a7af6459f90efba800 https://www.encodeproject.org/files/ENCFF285KYY/@@download/ENCFF285KYY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF851SZV/, /files/ENCFF359PRT/, /files/ENCFF854RGL/, /files/ENCFF453MJW/, /files/ENCFF698VRV/, /files/ENCFF680LPN/ released s3://encode-public/2018/01/09/5e471732-3468-48de-8516-6330f6b85a4b/ENCFF285KYY.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF899PMS fastq fastq reads ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 152518359 Kevin White, UChicago 69b439702cd04288279fa6bf50932820 https://www.encodeproject.org/files/ENCFF899PMS/@@download/ENCFF899PMS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF851SZV/, /files/ENCFF359PRT/, /files/ENCFF854RGL/, /files/ENCFF453MJW/, /files/ENCFF698VRV/, /files/ENCFF680LPN/ released s3://encode-public/2018/01/09/bc600ee8-fcae-4260-94e1-c6b6166ac4e9/ENCFF899PMS.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF403SXK bam bam alignments ce10 ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF285KYY/, /files/ENCFF899PMS/, /files/ENCFF987UMF/ 439675951 Kevin White, UChicago 8ccf69b3d2a065f7927db982ec9188c9 https://www.encodeproject.org/files/ENCFF403SXK/@@download/ENCFF403SXK.bam released s3://encode-public/2018/01/09/608dfe88-f55d-462d-b6d4-7c625bbd1c16/ENCFF403SXK.bam Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF591SEF bam bam alignments ce11 ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF285KYY/, /files/ENCFF899PMS/, /files/ENCFF586MOL/ 440262289 Kevin White, UChicago 7aca1ebeacd9677dce7c388deb0216ce https://www.encodeproject.org/files/ENCFF591SEF/@@download/ENCFF591SEF.bam released s3://encode-public/2018/01/09/c5a4093b-9cc4-45a5-ada6-03b1d8f72f66/ENCFF591SEF.bam Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF157QSJ bigWig bigWig read-depth normalized signal ce10 ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF403SXK/ 10060536 Kevin White, UChicago 80b7ca157b2a8dd998efb2ea52e1d5df https://www.encodeproject.org/files/ENCFF157QSJ/@@download/ENCFF157QSJ.bigWig released s3://encode-public/2018/01/09/0437f963-7530-4bcd-8aee-769ba7bae3b8/ENCFF157QSJ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF727QBU bigWig bigWig signal of unique reads ce10 ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF403SXK/ 10015719 Kevin White, UChicago f12c6af1bd408ee1c0d4d6f6ff8e83b7 https://www.encodeproject.org/files/ENCFF727QBU/@@download/ENCFF727QBU.bigWig released s3://encode-public/2018/01/09/4e500490-77ab-4826-b9e6-e0f93863dde2/ENCFF727QBU.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF755GUC bigWig bigWig read-depth normalized signal ce11 ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': 'f0e5f8e3-27df-4c33-9939-3b2d30b1ad8e', 'status': 'released'} DNA 2018-01-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF591SEF/ 10055998 Kevin White, UChicago 794c29babe513e223ef70f726cff1373 https://www.encodeproject.org/files/ENCFF755GUC/@@download/ENCFF755GUC.bigWig released s3://encode-public/2018/01/09/7fc58196-0efa-4074-b381-80a87ad4e5e2/ENCFF755GUC.bigWig Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF843OSK bigWig bigWig signal of unique reads ce11 ENCSR368HRR Control ChIP-seq /worm-donors/ENCDO904UHP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177190/'], '@type': ['Target', 'Item'], 'name': 'ama-1-celegans', 'label': 'ama-1', '@id': '/targets/ama-1-celegans/', 'title': 'ama-1 (Caenorhabditis 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2500 released s3://encode-public/2016/03/18/50960e0f-4d26-47ef-93a7-c8e78c955774/ENCFF198OWI.fastq.gz ENCFF839TPC fastq fastq reads ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 single-ended 1087788355 Bradley Bernstein, Broad fdb53327337235505675ca65df925587 SRA:SRR5331249 https://www.encodeproject.org/files/ENCFF839TPC/@@download/ENCFF839TPC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/25eba451-e497-4a08-bd45-052965a84b13/ENCFF839TPC.fastq.gz ENCFF636HAV fastq fastq reads ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 single-ended 1113408905 Bradley Bernstein, Broad 8907cbe9ef8ab8416d449bd289f6dd58 SRA:SRR5331250 https://www.encodeproject.org/files/ENCFF636HAV/@@download/ENCFF636HAV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/67f511d7-adcb-47d5-af38-9dcdd8fecfda/ENCFF636HAV.fastq.gz ENCFF953XTR fastq fastq reads ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 single-ended 1362609962 Bradley Bernstein, Broad 8c803f5b9117da940d5159f3da2e1586 SRA:SRR5331251 https://www.encodeproject.org/files/ENCFF953XTR/@@download/ENCFF953XTR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/602424f3-2029-4616-8a2b-223c7b24e794/ENCFF953XTR.fastq.gz ENCFF947ZSK fastq fastq reads ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 single-ended 1279908569 Bradley Bernstein, Broad 1398279e331181b274eba90b0e93852f SRA:SRR5331252 https://www.encodeproject.org/files/ENCFF947ZSK/@@download/ENCFF947ZSK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/469f5d01-58fc-4cef-81ef-4134e52b80cf/ENCFF947ZSK.fastq.gz ENCFF139OBG bam bam unfiltered alignments GRCh38 ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF839TPC/, /files/ENCFF947ZSK/, /files/ENCFF643CGH/, /files/ENCFF198OWI/, /files/ENCFF636HAV/, /files/ENCFF953XTR/ 6383801480 ENCODE Processing Pipeline e73de3f9ff048977eede5efafc34ef96 https://www.encodeproject.org/files/ENCFF139OBG/@@download/ENCFF139OBG.bam released s3://encode-public/2017/01/31/441ba59e-ada7-45c8-942c-15c09a3bd74c/ENCFF139OBG.bam ENCODE3 GRCh38 archived ENCFF590RZJ bam bam alignments GRCh38 ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF839TPC/, /files/ENCFF947ZSK/, /files/ENCFF643CGH/, /files/ENCFF198OWI/, /files/ENCFF636HAV/, /files/ENCFF953XTR/ 5184362472 ENCODE Processing Pipeline b0b5c549e281072a0daa8240417a625e https://www.encodeproject.org/files/ENCFF590RZJ/@@download/ENCFF590RZJ.bam released s3://encode-public/2017/01/31/68ecc4bf-7816-4681-add7-1001f90f91d1/ENCFF590RZJ.bam ENCODE3 GRCh38 archived ENCFF782IFK bam bam unfiltered alignments hg19 ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF839TPC/, /files/ENCFF947ZSK/, /files/ENCFF198OWI/, /files/ENCFF807MUK/, /files/ENCFF636HAV/, /files/ENCFF953XTR/ 6362074513 ENCODE Processing Pipeline 6a3031d20ffae9769ef82bcfb6620141 https://www.encodeproject.org/files/ENCFF782IFK/@@download/ENCFF782IFK.bam released s3://encode-public/2017/01/31/cd87271e-3a9f-41f0-bf7c-a6b4e599afa7/ENCFF782IFK.bam ENCODE3 hg19 archived ENCFF956KRJ bam bam alignments hg19 ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF839TPC/, /files/ENCFF947ZSK/, /files/ENCFF198OWI/, /files/ENCFF807MUK/, /files/ENCFF636HAV/, /files/ENCFF953XTR/ 5174927297 ENCODE Processing Pipeline 7a8fb7585d2865b5a4271a51ed22d0e8 https://www.encodeproject.org/files/ENCFF956KRJ/@@download/ENCFF956KRJ.bam released s3://encode-public/2017/01/31/c0f89ca0-0656-4d06-9a03-823473f8f988/ENCFF956KRJ.bam ENCODE3 hg19 archived ENCFF568WUD bam bam unfiltered alignments GRCh38 ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF198OWI/, /files/ENCFF839TPC/, /files/ENCFF953XTR/, /files/ENCFF947ZSK/, /files/ENCFF636HAV/ 6449720983 ENCODE Processing Pipeline 298e5ad514515d70760a620be09d0036 https://www.encodeproject.org/files/ENCFF568WUD/@@download/ENCFF568WUD.bam released s3://encode-public/2020/08/20/92dc7361-3582-48fa-8950-97f12b55e50c/ENCFF568WUD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF187IST bam bam alignments GRCh38 ENCSR099LGH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF198OWI/, /files/ENCFF839TPC/, /files/ENCFF953XTR/, /files/ENCFF947ZSK/, /files/ENCFF636HAV/ 5309834819 ENCODE Processing Pipeline 52941c9bff1698e9d6106dcd71f7ed44 https://www.encodeproject.org/files/ENCFF187IST/@@download/ENCFF187IST.bam released s3://encode-public/2020/08/20/e6155721-7716-4baf-97e1-af056493cc2c/ENCFF187IST.bam ENCODE4 v1.5.1 GRCh38 released ENCFF152ICV tagAlign tagAlign alignments hg19 ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF595NUI/, /files/ENCFF335YMI/ 222904044 Anshul Kundaje, Stanford 1e5ab792058224cff2d04d4db31c1221 https://www.encodeproject.org/files/ENCFF152ICV/@@download/ENCFF152ICV.tagAlign.gz archived s3://encode-public/2016/03/30/fcfc92c2-1c57-4fd2-a4c4-645bfcc5477b/ENCFF152ICV.tagAlign.gz Lab custom hg19 archived low read length ENCFF595NUI fastq fastq reads ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 748028865 Zhiping Weng, UMass d3b44fae7d6086d8d739addcf6237c5d SRA:SRR642524 https://www.encodeproject.org/files/ENCFF595NUI/@@download/ENCFF595NUI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/13174d45-b52a-41da-a9e6-dcdc5840ff31/ENCFF595NUI.fastq.gz low read length ENCFF335YMI fastq fastq reads ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 860707045 Zhiping Weng, UMass 1be3cda471c89f29b1c9e8dd4c9ac3a3 SRA:SRR642523 https://www.encodeproject.org/files/ENCFF335YMI/@@download/ENCFF335YMI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/94d9002e-10d1-4434-b365-b2546d01f0c3/ENCFF335YMI.fastq.gz low read length ENCFF269RUZ bam bam unfiltered alignments hg19 ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF335YMI/, /files/ENCFF595NUI/, /files/ENCFF807MUK/ 2002395834 ENCODE Processing Pipeline 356c0f2d1fb42bceb7d87c31bfe9401f https://www.encodeproject.org/files/ENCFF269RUZ/@@download/ENCFF269RUZ.bam released s3://encode-public/2016/12/19/503bb4d5-3a7d-4b18-8fb4-47845ab6d6b4/ENCFF269RUZ.bam ENCODE3 hg19 archived low read length ENCFF035CLW bam bam unfiltered alignments GRCh38 ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF335YMI/, /files/ENCFF595NUI/, /files/ENCFF643CGH/ 2010374761 ENCODE Processing Pipeline b79db6c929b16f758ed0e85234e8f6c7 https://www.encodeproject.org/files/ENCFF035CLW/@@download/ENCFF035CLW.bam released s3://encode-public/2016/12/19/225c4ee7-efb6-4333-bff0-4377056116e2/ENCFF035CLW.bam ENCODE3 GRCh38 archived low read length ENCFF439JAN bam bam alignments hg19 ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF335YMI/, /files/ENCFF595NUI/, /files/ENCFF807MUK/ 1315724795 ENCODE Processing Pipeline fcdeaada961e38864c12c7f9fccb31d6 https://www.encodeproject.org/files/ENCFF439JAN/@@download/ENCFF439JAN.bam released s3://encode-public/2016/12/19/5001a78b-4c86-42be-a10c-fef242ec3e63/ENCFF439JAN.bam ENCODE3 hg19 archived low read length ENCFF409SLI bam bam alignments GRCh38 ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF335YMI/, /files/ENCFF595NUI/, /files/ENCFF643CGH/ 1315379071 ENCODE Processing Pipeline 336329809bc24375b08f3bbb3ff293f3 https://www.encodeproject.org/files/ENCFF409SLI/@@download/ENCFF409SLI.bam released s3://encode-public/2016/12/19/d19aee19-ccb0-48c8-8ad9-f8c1454e191b/ENCFF409SLI.bam ENCODE3 GRCh38 archived low read length ENCFF685SOP tagAlign tagAlign alignments hg19 ENCSR107RQX Control ChIP-seq UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 204194327 Anshul Kundaje, Stanford 8fda57c60108a501bedb8847a122c4b5 https://www.encodeproject.org/files/ENCFF685SOP/@@download/ENCFF685SOP.tagAlign.gz archived s3://encode-public/2016/02/11/3ae9ad37-2e82-4a5e-b2a2-c9859c15cc63/ENCFF685SOP.tagAlign.gz Lab custom hg19 archived low read length ENCFF793FWE bam bam unfiltered alignments GRCh38 ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF595NUI/, /files/ENCFF110MCL/, /files/ENCFF335YMI/ 1931420418 ENCODE Processing Pipeline ededc15137d7b82f26b0066679a98d56 https://www.encodeproject.org/files/ENCFF793FWE/@@download/ENCFF793FWE.bam released s3://encode-public/2020/10/08/279349d5-49f2-4448-bb94-e373d7585375/ENCFF793FWE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF127HDF bam bam alignments GRCh38 ENCSR107RQX Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0000059 large intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF595NUI/, /files/ENCFF110MCL/, /files/ENCFF335YMI/ 1435468935 ENCODE Processing Pipeline 1005fa0ce0399623384c56e99b84976e https://www.encodeproject.org/files/ENCFF127HDF/@@download/ENCFF127HDF.bam released s3://encode-public/2020/10/08/1e9c991c-812d-457f-acd8-1996bafefafc/ENCFF127HDF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF664CIS fastq fastq reads ENCSR231WZH Control ChIP-seq /fly-donors/ENCDO108GSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50392/'], '@type': ['Target', 'Item'], 'name': 'schlank-dmelanogaster', 'label': 'schlank', '@id': '/targets/schlank-dmelanogaster/', 'title': 'schlank (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '686acb4b-f787-4f86-810d-e04960c513db', 'status': 'released'} dm3 X 6144706 6167209 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 833334433 Kevin White, UChicago 78e9732bf2743cd2c7e7be2d9b3350c6 https://www.encodeproject.org/files/ENCFF664CIS/@@download/ENCFF664CIS.fastq.gz Illumina HiSeq 4000 /files/ENCFF416KXO/ released s3://encode-public/2018/05/29/700433b3-2d10-4941-bf52-b1e67f8a1be1/ENCFF664CIS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF830FXG bam bam alignments dm6 ENCSR231WZH Control ChIP-seq /fly-donors/ENCDO108GSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50392/'], '@type': ['Target', 'Item'], 'name': 'schlank-dmelanogaster', 'label': 'schlank', '@id': '/targets/schlank-dmelanogaster/', 'title': 'schlank (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '686acb4b-f787-4f86-810d-e04960c513db', 'status': 'released'} dm3 X 6144706 6167209 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF664CIS/, /files/ENCFF479RCH/ 1092740720 Kevin White, UChicago 7a8c04f578461a8d3216b84d34a2d7e3 https://www.encodeproject.org/files/ENCFF830FXG/@@download/ENCFF830FXG.bam released s3://encode-public/2018/05/29/6e0a3dd3-996c-4494-9f51-baf8c87cb78f/ENCFF830FXG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF337HTF bigWig bigWig signal of unique reads dm6 ENCSR231WZH Control ChIP-seq /fly-donors/ENCDO108GSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50392/'], '@type': ['Target', 'Item'], 'name': 'schlank-dmelanogaster', 'label': 'schlank', '@id': '/targets/schlank-dmelanogaster/', 'title': 'schlank (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '686acb4b-f787-4f86-810d-e04960c513db', 'status': 'released'} dm3 X 6144706 6167209 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF830FXG/ 17568401 Kevin White, UChicago 6b44a504209fe4f73b95e3e6149e3e81 https://www.encodeproject.org/files/ENCFF337HTF/@@download/ENCFF337HTF.bigWig released s3://encode-public/2018/05/30/3abdf90e-949d-498d-a16e-da9ab6f99ca0/ENCFF337HTF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF332QQS bigWig bigWig read-depth normalized signal dm6 ENCSR231WZH Control ChIP-seq /fly-donors/ENCDO108GSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50392/'], '@type': ['Target', 'Item'], 'name': 'schlank-dmelanogaster', 'label': 'schlank', '@id': '/targets/schlank-dmelanogaster/', 'title': 'schlank (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '686acb4b-f787-4f86-810d-e04960c513db', 'status': 'released'} dm3 X 6144706 6167209 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF830FXG/ 17587167 Kevin White, UChicago f22c78b669ca6de0448e0bc40dbffc87 https://www.encodeproject.org/files/ENCFF332QQS/@@download/ENCFF332QQS.bigWig released s3://encode-public/2018/05/30/74903446-c0ad-4e1c-8943-06045a4347ce/ENCFF332QQS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF268GLS fastq fastq reads ENCSR058THH Control ChIP-seq /worm-donors/ENCDO670UNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185980/'], '@type': ['Target', 'Item'], 'name': 'hlh-13-celegans', 'label': 'hlh-13', '@id': '/targets/hlh-13-celegans/', 'title': 'hlh-13 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0545f077-489f-43e7-951e-a0e4b15939ee', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 816337232 Kevin White, UChicago afeb3198f6cce0f7011ce93a00ec4838 https://www.encodeproject.org/files/ENCFF268GLS/@@download/ENCFF268GLS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/fc70b552-4038-4afa-b7e3-04def07723a2/ENCFF268GLS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF065XGH bam bam alignments ce11 ENCSR058THH Control ChIP-seq /worm-donors/ENCDO670UNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185980/'], '@type': ['Target', 'Item'], 'name': 'hlh-13-celegans', 'label': 'hlh-13', '@id': '/targets/hlh-13-celegans/', 'title': 'hlh-13 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0545f077-489f-43e7-951e-a0e4b15939ee', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF268GLS/, /files/ENCFF586MOL/ 1064525405 Kevin White, UChicago 1fc470a0785c4910acde3c31dc2478be https://www.encodeproject.org/files/ENCFF065XGH/@@download/ENCFF065XGH.bam released s3://encode-public/2018/05/31/0475a266-a59b-4cb9-ae2d-f17f5d5c7c58/ENCFF065XGH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF516RTI bigWig bigWig signal of unique reads ce11 ENCSR058THH Control ChIP-seq /worm-donors/ENCDO670UNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185980/'], '@type': ['Target', 'Item'], 'name': 'hlh-13-celegans', 'label': 'hlh-13', '@id': '/targets/hlh-13-celegans/', 'title': 'hlh-13 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0545f077-489f-43e7-951e-a0e4b15939ee', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF065XGH/ 9973976 Kevin White, UChicago 2d3d7ae28f16682c72479f5a890fcca1 https://www.encodeproject.org/files/ENCFF516RTI/@@download/ENCFF516RTI.bigWig released s3://encode-public/2018/05/31/235740f6-e33c-49f2-a380-561d7f524a04/ENCFF516RTI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF501BAE bigWig bigWig read-depth normalized signal ce11 ENCSR058THH Control ChIP-seq /worm-donors/ENCDO670UNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185980/'], '@type': ['Target', 'Item'], 'name': 'hlh-13-celegans', 'label': 'hlh-13', '@id': '/targets/hlh-13-celegans/', 'title': 'hlh-13 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0545f077-489f-43e7-951e-a0e4b15939ee', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF065XGH/ 10003056 Kevin White, UChicago 7d0b7bf1a4ac352798bad619cca8cd2f https://www.encodeproject.org/files/ENCFF501BAE/@@download/ENCFF501BAE.bigWig released s3://encode-public/2018/05/31/6c2047e9-107f-4fba-a41a-7e6ea6009eda/ENCFF501BAE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF097PPT fastq fastq reads ENCSR071DPR Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2078653875 Bradley Bernstein, Broad 8de802de4f476c5e4eb9baed109ec9b2 SRA:SRR13803928 https://www.encodeproject.org/files/ENCFF097PPT/@@download/ENCFF097PPT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/63d9ef4b-1649-44c2-9319-4ddcda72f08c/ENCFF097PPT.fastq.gz ENCFF601AGP fastq fastq reads ENCSR071DPR Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 2094521212 Bradley Bernstein, Broad 92924a18088ed808a187547471105ec1 SRA:SRR13803929 https://www.encodeproject.org/files/ENCFF601AGP/@@download/ENCFF601AGP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/8f00b298-d771-404d-86f2-5181efebb3ad/ENCFF601AGP.fastq.gz ENCFF849TMG bam bam alignments GRCh38 ENCSR071DPR Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF097PPT/, /files/ENCFF601AGP/, /files/ENCFF110MCL/ 3280799850 ENCODE Processing Pipeline 41d53fdafba5d90d44ca967fd26eec8a https://www.encodeproject.org/files/ENCFF849TMG/@@download/ENCFF849TMG.bam released s3://encode-public/2020/07/19/298446cd-c54a-425b-8388-ed5ce03d73a8/ENCFF849TMG.bam ENCODE4 v1.5.0 GRCh38 released ENCFF608HUO bam bam unfiltered alignments GRCh38 ENCSR071DPR Control ChIP-seq /human-donors/ENCDO317WFZ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF097PPT/, /files/ENCFF601AGP/, /files/ENCFF110MCL/ 4048502822 ENCODE Processing Pipeline 8233eb4b4087b172dd239b10577dbca2 https://www.encodeproject.org/files/ENCFF608HUO/@@download/ENCFF608HUO.bam released s3://encode-public/2020/07/19/b1e7a800-802a-496d-bd4d-fae6846e84d4/ENCFF608HUO.bam ENCODE4 v1.5.0 GRCh38 released ENCFF440IFT fastq fastq reads ENCSR869CPS Control ChIP-seq /worm-donors/ENCDO003YPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '55d82b5f-3b94-40d0-a280-c775aa647923', 'status': 'released'} ce11 X 1445397 1477115 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1533156545 Kevin White, UChicago 94408cc28ecc8630fa5b09f28bebe07a https://www.encodeproject.org/files/ENCFF440IFT/@@download/ENCFF440IFT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/2877583f-d271-4512-b36b-2956262eb2e9/ENCFF440IFT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF497AYE fastq fastq reads ENCSR869CPS Control ChIP-seq /worm-donors/ENCDO003YPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '55d82b5f-3b94-40d0-a280-c775aa647923', 'status': 'released'} ce11 X 1445397 1477115 DNA 2017-11-22 modERN sonication (generic microtip) 7 7_1 50 single-ended 1091160474 Kevin White, UChicago 395ac4af342835560225eb5beb445f81 https://www.encodeproject.org/files/ENCFF497AYE/@@download/ENCFF497AYE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/7d09e888-fb88-438b-ae84-e6055ef82351/ENCFF497AYE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF980ALW bam bam alignments ce10 ENCSR869CPS Control ChIP-seq /worm-donors/ENCDO003YPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '55d82b5f-3b94-40d0-a280-c775aa647923', 'status': 'released'} ce11 X 1445397 1477115 DNA 2017-11-22 modERN sonication (generic microtip) 1, 7 1_1, 7_1 50 /files/ENCFF440IFT/, /files/ENCFF497AYE/, /files/ENCFF987UMF/ 3467005705 Kevin White, UChicago 32cbe931365cf78de59109912fab4376 https://www.encodeproject.org/files/ENCFF980ALW/@@download/ENCFF980ALW.bam released s3://encode-public/2017/10/06/2c5cd3b4-e1f5-4da2-b59d-2e2c2a0ba217/ENCFF980ALW.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF395KES bam bam alignments ce11 ENCSR869CPS Control ChIP-seq /worm-donors/ENCDO003YPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '55d82b5f-3b94-40d0-a280-c775aa647923', 'status': 'released'} ce11 X 1445397 1477115 DNA 2017-11-22 modERN sonication (generic microtip) 1, 7 1_1, 7_1 50 /files/ENCFF440IFT/, /files/ENCFF497AYE/, /files/ENCFF586MOL/ 3469935601 Kevin White, UChicago e36a8e2012ff3648fd104b93217c71a0 https://www.encodeproject.org/files/ENCFF395KES/@@download/ENCFF395KES.bam released s3://encode-public/2017/10/06/a86712dd-d890-4dec-8754-c712fcf77502/ENCFF395KES.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF052MYY bigWig bigWig signal of unique reads ce10 ENCSR869CPS Control ChIP-seq /worm-donors/ENCDO003YPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '55d82b5f-3b94-40d0-a280-c775aa647923', 'status': 'released'} ce11 X 1445397 1477115 DNA 2017-11-22 modERN sonication (generic microtip) 1, 7 1_1, 7_1 /files/ENCFF980ALW/ 9935078 Kevin White, UChicago 5eb3e8449fb38d6263987e614095fc2a https://www.encodeproject.org/files/ENCFF052MYY/@@download/ENCFF052MYY.bigWig released s3://encode-public/2017/10/09/b316756a-fc9e-499d-afbd-fbba155973e5/ENCFF052MYY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF044PMG bigWig bigWig read-depth normalized signal ce10 ENCSR869CPS Control ChIP-seq /worm-donors/ENCDO003YPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '55d82b5f-3b94-40d0-a280-c775aa647923', 'status': 'released'} ce11 X 1445397 1477115 DNA 2017-11-22 modERN sonication (generic microtip) 1, 7 1_1, 7_1 /files/ENCFF980ALW/ 9939885 Kevin White, UChicago 252ec14856ba285939dc95140da288c4 https://www.encodeproject.org/files/ENCFF044PMG/@@download/ENCFF044PMG.bigWig released s3://encode-public/2017/10/09/09a58d55-0ea0-43a6-a738-0656caaad93e/ENCFF044PMG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF640FTW bigWig bigWig signal of unique reads ce11 ENCSR869CPS Control ChIP-seq /worm-donors/ENCDO003YPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis 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'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180481/'], '@type': ['Target', 'Item'], 'name': 'cebp-1-celegans', 'label': 'cebp-1', '@id': '/targets/cebp-1-celegans/', 'title': 'cebp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '55d82b5f-3b94-40d0-a280-c775aa647923', 'status': 'released'} ce11 X 1445397 1477115 DNA 2017-11-22 modERN sonication (generic microtip) 1, 7 1_1, 7_1 /files/ENCFF395KES/ 9936726 Kevin White, UChicago 8cbb0d74c7d44970e0038b327b0defb1 https://www.encodeproject.org/files/ENCFF744HPY/@@download/ENCFF744HPY.bigWig released s3://encode-public/2017/10/09/b404e14e-3d06-477a-afb1-f70b511eab62/ENCFF744HPY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF150YLW fastq fastq reads ENCSR592KRF Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 767766626 Zhiping Weng, UMass ce33c9545f5be35a4b40127776c80af2 SRA:SRR1045833 https://www.encodeproject.org/files/ENCFF150YLW/@@download/ENCFF150YLW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/55bf89ed-cc56-47df-a01a-196acfbb9d2a/ENCFF150YLW.fastq.gz low read length ENCFF980SCI fastq fastq reads ENCSR592KRF Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1877397510 Zhiping Weng, UMass 9553ad5912adf7f5c612972f4a90a914 SRA:SRR578710 https://www.encodeproject.org/files/ENCFF980SCI/@@download/ENCFF980SCI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/003d5d06-fb43-4e85-8e78-ccf5f97ea26c/ENCFF980SCI.fastq.gz low read length ENCFF118JUO bam bam unfiltered alignments GRCh38 ENCSR592KRF Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF150YLW/, /files/ENCFF980SCI/, /files/ENCFF110MCL/ 3155819456 ENCODE Processing Pipeline 71d9b2b3cdfa937915bd3c01cb7200d2 https://www.encodeproject.org/files/ENCFF118JUO/@@download/ENCFF118JUO.bam released s3://encode-public/2020/10/08/5d18b8f5-e2af-40f2-bd0c-59fb5e6e4609/ENCFF118JUO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF422FAA bam bam unfiltered alignments hg19 ENCSR592KRF Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF150YLW/, /files/ENCFF980SCI/ 3236977123 ENCODE Processing Pipeline 4bf4b82cb027323218ff21286b460172 https://www.encodeproject.org/files/ENCFF422FAA/@@download/ENCFF422FAA.bam released s3://encode-public/2017/03/21/eda62f2e-77b7-47ce-b02b-735828806521/ENCFF422FAA.bam ENCODE3 hg19 archived low read length ENCFF042HFM bam bam alignments hg19 ENCSR592KRF Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF150YLW/, /files/ENCFF980SCI/ 1947772589 ENCODE Processing Pipeline e5b6e6a7715fd662f278e0a551d6958c https://www.encodeproject.org/files/ENCFF042HFM/@@download/ENCFF042HFM.bam released s3://encode-public/2017/03/21/8b57b2ce-7c0f-4c84-bf48-19871b3553e3/ENCFF042HFM.bam ENCODE3 hg19 archived low read length ENCFF336YCH bam bam unfiltered alignments GRCh38 ENCSR592KRF Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF150YLW/, /files/ENCFF980SCI/ 3251775275 ENCODE Processing Pipeline 6d3a249d52fba5a86a239eda22401cfa https://www.encodeproject.org/files/ENCFF336YCH/@@download/ENCFF336YCH.bam released s3://encode-public/2017/03/21/c66d25bb-83dc-40ce-a7fb-23a9d1780e5f/ENCFF336YCH.bam ENCODE3 GRCh38 archived low read length ENCFF246SXV bam bam alignments GRCh38 ENCSR592KRF 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read length ENCFF078SMC fastq fastq reads ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1905618301 Bing Ren, UCSD b133292dd7033aed4f4e7d9439722e3e SRA:SRR3652283 https://www.encodeproject.org/files/ENCFF078SMC/@@download/ENCFF078SMC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/11d5ffdc-c361-4f2f-b809-86343281ace7/ENCFF078SMC.fastq.gz ENCFF318AFJ fastq fastq reads ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2110582878 Bing Ren, UCSD d494778ac898fb1cd3905441719f19e3 SRA:SRR3652285 https://www.encodeproject.org/files/ENCFF318AFJ/@@download/ENCFF318AFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/1991622e-4179-4547-b05a-5df5199a614d/ENCFF318AFJ.fastq.gz ENCFF788YDC fastq fastq reads ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 518067735 Bing Ren, UCSD cc79682b72b2d866479ae1c27c7850b2 SRA:SRR3652284 https://www.encodeproject.org/files/ENCFF788YDC/@@download/ENCFF788YDC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/22b89a37-4498-44a5-869a-a317f9b4fb26/ENCFF788YDC.fastq.gz ENCFF950FXV bam bam alignments mm10-minimal ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF806TVZ/, /files/ENCFF788YDC/, /files/ENCFF078SMC/ 2440403803 ENCODE Processing Pipeline 4046a03a799e478bd3ded8968d5e76c4 https://www.encodeproject.org/files/ENCFF950FXV/@@download/ENCFF950FXV.bam archived s3://encode-public/2016/03/29/2a80d71c-2a4b-4d3b-8190-1ab6a9fb0066/ENCFF950FXV.bam ENCFF670KZF bam bam alignments mm10-minimal ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF806TVZ/, /files/ENCFF318AFJ/ 2110851194 ENCODE Processing Pipeline a8d95a798707a0da80529ead7d3991c0 https://www.encodeproject.org/files/ENCFF670KZF/@@download/ENCFF670KZF.bam archived s3://encode-public/2016/03/29/2c592168-351c-4f83-9271-244af9c5dc29/ENCFF670KZF.bam ENCFF608PBR bam bam unfiltered alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF318AFJ/ 2911902043 ENCODE Processing Pipeline e691c1ed0db1d1462c8d8fa232dd2b87 https://www.encodeproject.org/files/ENCFF608PBR/@@download/ENCFF608PBR.bam released s3://encode-public/2016/05/20/2076c859-f8c7-44b2-b657-2306decdb828/ENCFF608PBR.bam ENCODE3 mm10 archived ENCFF327VKQ bam bam unfiltered alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF018NEO/, /files/ENCFF788YDC/, /files/ENCFF078SMC/ 3341271269 ENCODE Processing Pipeline dc589453fc9e1ce82a717569e142f3da https://www.encodeproject.org/files/ENCFF327VKQ/@@download/ENCFF327VKQ.bam released s3://encode-public/2016/05/20/f1f36d73-9751-4386-95b7-54c25933430f/ENCFF327VKQ.bam ENCODE3 mm10 archived ENCFF741BBU bam bam alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF318AFJ/ 2110386060 ENCODE Processing Pipeline d151c23a3dc80ae747e22feb9568f3f3 https://www.encodeproject.org/files/ENCFF741BBU/@@download/ENCFF741BBU.bam released s3://encode-public/2016/05/20/ac02b202-b1ad-4693-af65-f967db55f536/ENCFF741BBU.bam ENCODE3 mm10 archived ENCFF563KVK bam bam alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF018NEO/, /files/ENCFF788YDC/, /files/ENCFF078SMC/ 2439910309 ENCODE Processing Pipeline f40bf651a8bf1396e38fded83808b508 https://www.encodeproject.org/files/ENCFF563KVK/@@download/ENCFF563KVK.bam released s3://encode-public/2016/05/20/b88a4aa0-2ab7-4069-8c20-687e185315bc/ENCFF563KVK.bam ENCODE3 mm10 archived ENCFF483XCA bam bam unfiltered alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF318AFJ/, /files/ENCFF309GLL/ 2769526183 ENCODE Processing Pipeline 2284f466ddfd3f86139900015262ca3f https://www.encodeproject.org/files/ENCFF483XCA/@@download/ENCFF483XCA.bam released s3://encode-public/2020/10/08/8a90a28b-911d-471f-b82a-882675162ab6/ENCFF483XCA.bam ENCODE4 v1.5.1 mm10 released ENCFF663JMX bam bam alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF078SMC/, /files/ENCFF788YDC/, /files/ENCFF309GLL/ 2465239227 ENCODE Processing Pipeline ce8ab0136255e6e1ada8fa6cc72fa0a4 https://www.encodeproject.org/files/ENCFF663JMX/@@download/ENCFF663JMX.bam released s3://encode-public/2020/10/08/7c674beb-34ba-4e52-96b8-07bc690a6b5d/ENCFF663JMX.bam ENCODE4 v1.5.1 mm10 released ENCFF721UFL bam bam alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF318AFJ/, /files/ENCFF309GLL/ 2134806509 ENCODE Processing Pipeline 612c9c6a44e3d944f775b51edaba072a https://www.encodeproject.org/files/ENCFF721UFL/@@download/ENCFF721UFL.bam released s3://encode-public/2020/10/08/b91582db-2c3b-4499-b0df-7254f93a7c83/ENCFF721UFL.bam ENCODE4 v1.5.1 mm10 released ENCFF110WSN bam bam unfiltered alignments mm10 ENCSR523QKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF078SMC/, /files/ENCFF788YDC/, /files/ENCFF309GLL/ 3180083569 ENCODE Processing Pipeline 29f89381a3ba49972dc6730646955028 https://www.encodeproject.org/files/ENCFF110WSN/@@download/ENCFF110WSN.bam released s3://encode-public/2020/10/08/619c5574-f4b9-4c31-90a0-c635231e35ef/ENCFF110WSN.bam ENCODE4 v1.5.1 mm10 released ENCFF546YAW fastq fastq reads ENCSR083MKO Control ChIP-seq /worm-donors/ENCDO943JAQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171849/'], '@type': ['Target', 'Item'], 'name': 'pop-1-celegans', 'label': 'pop-1', '@id': '/targets/pop-1-celegans/', 'title': 'pop-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ce01dbcf-8f38-444a-bf03-41baf295e3d5', 'status': 'released'} ce11 I 2802242 2836478 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1378598942 Kevin White, UChicago e48ab8bea7249b28f0a2eaf94225e316 https://www.encodeproject.org/files/ENCFF546YAW/@@download/ENCFF546YAW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/04/8888e90d-5523-41b9-bd56-e73dc96e07dd/ENCFF546YAW.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF904QKC bam bam alignments ce10 ENCSR083MKO Control ChIP-seq /worm-donors/ENCDO943JAQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171849/'], '@type': ['Target', 'Item'], 'name': 'pop-1-celegans', 'label': 'pop-1', '@id': '/targets/pop-1-celegans/', 'title': 'pop-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ce01dbcf-8f38-444a-bf03-41baf295e3d5', 'status': 'released'} ce11 I 2802242 2836478 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF546YAW/, /files/ENCFF987UMF/ 1618871401 Kevin White, UChicago 01658e4f76f8265437a32507d3e8a21a https://www.encodeproject.org/files/ENCFF904QKC/@@download/ENCFF904QKC.bam released s3://encode-public/2016/10/04/1fa7c7a6-7146-4e7f-b109-22eb8e0b7af3/ENCFF904QKC.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF962GPA bam bam alignments ce11 ENCSR083MKO Control ChIP-seq /worm-donors/ENCDO943JAQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171849/'], '@type': ['Target', 'Item'], 'name': 'pop-1-celegans', 'label': 'pop-1', '@id': '/targets/pop-1-celegans/', 'title': 'pop-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ce01dbcf-8f38-444a-bf03-41baf295e3d5', 'status': 'released'} ce11 I 2802242 2836478 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF546YAW/, /files/ENCFF586MOL/ 1620224149 Kevin White, UChicago aa505445f4b64aba99d3358cd2794d42 https://www.encodeproject.org/files/ENCFF962GPA/@@download/ENCFF962GPA.bam released s3://encode-public/2016/10/05/e563bd7a-10fe-4c38-b0b9-edfc80da9d00/ENCFF962GPA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF924ULE bigWig bigWig signal of unique reads ce10 ENCSR083MKO Control ChIP-seq /worm-donors/ENCDO943JAQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171849/'], '@type': ['Target', 'Item'], 'name': 'pop-1-celegans', 'label': 'pop-1', '@id': '/targets/pop-1-celegans/', 'title': 'pop-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ce01dbcf-8f38-444a-bf03-41baf295e3d5', 'status': 'released'} ce11 I 2802242 2836478 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF904QKC/ 9972327 Kevin White, UChicago 2964419897bb595f0d2aec3772476deb https://www.encodeproject.org/files/ENCFF924ULE/@@download/ENCFF924ULE.bigWig released s3://encode-public/2016/10/06/21c237cc-2557-48b1-8be6-7dfd7413a796/ENCFF924ULE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF176DHH bigWig bigWig read-depth normalized signal ce10 ENCSR083MKO Control ChIP-seq /worm-donors/ENCDO943JAQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171849/'], '@type': ['Target', 'Item'], 'name': 'pop-1-celegans', 'label': 'pop-1', '@id': '/targets/pop-1-celegans/', 'title': 'pop-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ce01dbcf-8f38-444a-bf03-41baf295e3d5', 'status': 'released'} ce11 I 2802242 2836478 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF904QKC/ 9918754 Kevin White, UChicago 7bc88506dd7f8b868eea64ed9843b647 https://www.encodeproject.org/files/ENCFF176DHH/@@download/ENCFF176DHH.bigWig released s3://encode-public/2016/10/06/43aa9785-3cc4-4ef1-b818-2d96aabbe6b3/ENCFF176DHH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF327TLK bigWig bigWig signal of unique reads ce11 ENCSR083MKO Control ChIP-seq /worm-donors/ENCDO943JAQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171849/'], '@type': ['Target', 'Item'], 'name': 'pop-1-celegans', 'label': 'pop-1', '@id': '/targets/pop-1-celegans/', 'title': 'pop-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ce01dbcf-8f38-444a-bf03-41baf295e3d5', 'status': 'released'} ce11 I 2802242 2836478 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF962GPA/ 9972327 Kevin White, UChicago cb7d7fff7775290a88212d6834cbe91f https://www.encodeproject.org/files/ENCFF327TLK/@@download/ENCFF327TLK.bigWig released s3://encode-public/2016/10/06/6f624d3b-274d-4fe3-8749-53fad6c2e7e1/ENCFF327TLK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF905LYG bigWig bigWig read-depth normalized signal ce11 ENCSR083MKO Control ChIP-seq /worm-donors/ENCDO943JAQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171849/'], '@type': ['Target', 'Item'], 'name': 'pop-1-celegans', 'label': 'pop-1', '@id': '/targets/pop-1-celegans/', 'title': 'pop-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ce01dbcf-8f38-444a-bf03-41baf295e3d5', 'status': 'released'} ce11 I 2802242 2836478 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF962GPA/ 9918756 Kevin White, UChicago 8c9d2d9f85889ca5fd935daadd9b8d21 https://www.encodeproject.org/files/ENCFF905LYG/@@download/ENCFF905LYG.bigWig released s3://encode-public/2016/10/06/44a1e979-3090-40b4-bff1-78dd98ec18e1/ENCFF905LYG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF098NGA fastq fastq reads ENCSR988CHU Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1800626293 Bradley Bernstein, Broad 7aa325f13774e702f10b9b9381a615d2 SRA:SRR13804700 https://www.encodeproject.org/files/ENCFF098NGA/@@download/ENCFF098NGA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/33846cde-22eb-49aa-b736-18b18539b0cb/ENCFF098NGA.fastq.gz mild to moderate bottlenecking ENCFF513LPD fastq fastq reads ENCSR988CHU Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1781530590 Bradley Bernstein, Broad 41d82159f6965ead00586ccf1a100f4b SRA:SRR13804701 https://www.encodeproject.org/files/ENCFF513LPD/@@download/ENCFF513LPD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/5225758b-da0d-4f53-a9f3-ee6b1e2648ef/ENCFF513LPD.fastq.gz mild to moderate bottlenecking ENCFF849ZKB bam bam unfiltered alignments GRCh38 ENCSR988CHU Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF098NGA/, /files/ENCFF513LPD/ 3482164846 ENCODE Processing Pipeline f558319a364b4af5e04a971c6560b720 https://www.encodeproject.org/files/ENCFF849ZKB/@@download/ENCFF849ZKB.bam released s3://encode-public/2020/07/19/621d014b-ed96-4d1a-bcb2-76e0b78c3904/ENCFF849ZKB.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF857KGO bam bam alignments GRCh38 ENCSR988CHU Control ChIP-seq /human-donors/ENCDO180HAI/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF098NGA/, /files/ENCFF513LPD/ 2701165885 ENCODE Processing Pipeline 32e71605ccebc770f4b1a61834473441 https://www.encodeproject.org/files/ENCFF857KGO/@@download/ENCFF857KGO.bam released s3://encode-public/2020/07/19/49223c33-384e-44cb-8f87-22831f35710f/ENCFF857KGO.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF041FWW fastq fastq reads ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF945YNK/ 1891861097 Michael Snyder, Stanford 09a534b96bd169e54bb3deaa7a80fb64 SRA:SRR8659998 https://www.encodeproject.org/files/ENCFF041FWW/@@download/ENCFF041FWW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/479639d1-adef-4947-81c8-56aa3f877289/ENCFF041FWW.fastq.gz low read depth ENCFF945YNK fastq fastq reads ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF041FWW/ 1852685896 Michael Snyder, Stanford 7b78137eaab62a6061018f2451015f71 SRA:SRR8659998 https://www.encodeproject.org/files/ENCFF945YNK/@@download/ENCFF945YNK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/f5c45b83-8278-4a4a-bb7d-1a0b66434260/ENCFF945YNK.fastq.gz low read depth ENCFF636HFT bam bam unfiltered alignments GRCh38 ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF945YNK/, /files/ENCFF041FWW/ 4197063789 ENCODE Processing Pipeline 2325ac0ce55198d4f05eec004d167293 https://www.encodeproject.org/files/ENCFF636HFT/@@download/ENCFF636HFT.bam released s3://encode-public/2016/05/06/ddc0c1ea-c08e-49d2-ba97-23fa9596baf4/ENCFF636HFT.bam ENCODE3 GRCh38 archived low read depth ENCFF402JYJ bam bam alignments GRCh38 ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF945YNK/, /files/ENCFF041FWW/ 3437624584 ENCODE Processing Pipeline ca8be342612085af5cb208896646d695 https://www.encodeproject.org/files/ENCFF402JYJ/@@download/ENCFF402JYJ.bam released s3://encode-public/2016/05/06/a78b1797-4217-425f-a15f-3712b7ea709c/ENCFF402JYJ.bam ENCODE3 GRCh38 archived low read depth ENCFF417LDM bam bam unfiltered alignments hg19 ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF945YNK/, /files/ENCFF041FWW/ 4190620584 ENCODE Processing Pipeline 130bfa1ca811f699cf20d52d68d4f158 https://www.encodeproject.org/files/ENCFF417LDM/@@download/ENCFF417LDM.bam released s3://encode-public/2016/12/06/9686c092-257d-4e2b-b61f-961e472aa470/ENCFF417LDM.bam ENCODE3 hg19 archived low read depth ENCFF174JMG bam bam alignments hg19 ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF945YNK/, /files/ENCFF041FWW/ 3428238865 ENCODE Processing Pipeline e91cacc82e82a906caef860914915677 https://www.encodeproject.org/files/ENCFF174JMG/@@download/ENCFF174JMG.bam released s3://encode-public/2016/12/06/703e9dc6-33d9-4396-b9d8-b2d447f69886/ENCFF174JMG.bam ENCODE3 hg19 archived low read depth ENCFF289MUC bam bam unfiltered alignments GRCh38 ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF945YNK/, /files/ENCFF041FWW/ 4183943993 ENCODE Processing Pipeline 80cf24e708b905e1c80b1382ea45a262 https://www.encodeproject.org/files/ENCFF289MUC/@@download/ENCFF289MUC.bam released s3://encode-public/2020/06/13/e8a1bc6e-2abe-4a02-9658-a3b495800962/ENCFF289MUC.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF449UKZ bam bam alignments GRCh38 ENCSR046PIC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF945YNK/, /files/ENCFF041FWW/ 3368517874 ENCODE Processing Pipeline 8540513c46ca968c0f67fc788ebb9a7a https://www.encodeproject.org/files/ENCFF449UKZ/@@download/ENCFF449UKZ.bam released s3://encode-public/2020/06/13/2fcc800d-0e5d-4893-a351-51f2e27d5ed2/ENCFF449UKZ.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF619DKB fastq fastq reads ENCSR774MLK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 574771877 Bradley Bernstein, Broad a3c92ea21a9a2c2681b3cbd6c2d08394 SRA:SRR10838400 https://www.encodeproject.org/files/ENCFF619DKB/@@download/ENCFF619DKB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/7918cc38-63b2-408d-9872-4004823524d9/ENCFF619DKB.fastq.gz ENCFF597TVJ fastq fastq reads ENCSR774MLK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 560362200 Bradley Bernstein, Broad 503e88fcb117897a55af283a2378f372 SRA:SRR10838401 https://www.encodeproject.org/files/ENCFF597TVJ/@@download/ENCFF597TVJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/a6ab27d0-2157-4bfe-bb8b-4361fc39f8cc/ENCFF597TVJ.fastq.gz ENCFF889GKF bam bam unfiltered alignments GRCh38 ENCSR774MLK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF619DKB/, /files/ENCFF643CGH/, /files/ENCFF237HFY/, /files/ENCFF569OWU/, /files/ENCFF194AXF/, /files/ENCFF597TVJ/, /files/ENCFF239DXZ/ 4050270467 ENCODE Processing Pipeline 557eba7e75413857eeb265d07b13fc52 https://www.encodeproject.org/files/ENCFF889GKF/@@download/ENCFF889GKF.bam released s3://encode-public/2018/11/27/f5c76b2c-5fbe-4308-84fa-362f80e4dc63/ENCFF889GKF.bam ENCODE3 GRCh38 archived ENCFF028IGG bam bam alignments GRCh38 ENCSR774MLK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF619DKB/, /files/ENCFF643CGH/, /files/ENCFF237HFY/, /files/ENCFF569OWU/, /files/ENCFF194AXF/, /files/ENCFF597TVJ/, /files/ENCFF239DXZ/ 3401954562 ENCODE Processing Pipeline 9e628778867cd2de1789708bbfb94447 https://www.encodeproject.org/files/ENCFF028IGG/@@download/ENCFF028IGG.bam released 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331680617 Bradley Bernstein, Broad d2404e352d049f67a2c7a79a2892b184 SRA:SRR10838403 https://www.encodeproject.org/files/ENCFF239DXZ/@@download/ENCFF239DXZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/aaf0a0d1-45dd-4491-b32e-09d3a180d829/ENCFF239DXZ.fastq.gz ENCFF194AXF fastq fastq reads ENCSR774MLK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1246107977 Bradley Bernstein, Broad 83c679d5175cc9507626b98bcb13b18e SRA:SRR10838404 https://www.encodeproject.org/files/ENCFF194AXF/@@download/ENCFF194AXF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/2eb0a10a-c715-450a-9ef2-4ab3c956af7d/ENCFF194AXF.fastq.gz ENCFF569OWU fastq fastq reads ENCSR774MLK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1259260551 Bradley Bernstein, Broad 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lung tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF569OWU/, /files/ENCFF239DXZ/, /files/ENCFF597TVJ/, /files/ENCFF194AXF/, /files/ENCFF619DKB/, /files/ENCFF237HFY/, /files/ENCFF110MCL/ 3470474622 ENCODE Processing Pipeline f8fdd6d423294156d5f34ce92cd693aa https://www.encodeproject.org/files/ENCFF660HBS/@@download/ENCFF660HBS.bam released s3://encode-public/2020/09/19/e3a9f85d-6c55-443f-949e-5757eea45d5b/ENCFF660HBS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF455EJT bam bam alignments mm10-minimal ENCSR545RUT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF532FXB/, /files/ENCFF905ZVU/, /files/ENCFF806TVZ/ 2023533544 ENCODE Processing Pipeline 4a52d421200b749de1a3b7dbf2f9c0ba https://www.encodeproject.org/files/ENCFF455EJT/@@download/ENCFF455EJT.bam archived s3://encode-public/2015/06/24/c77098cb-4d27-4c91-bd3b-ac56e60a62f0/ENCFF455EJT.bam 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/mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 438370702 Bing Ren, UCSD f1e94d3a3ecd59e2fa14a6c1bbab1e84 SRA:SRR3652346 https://www.encodeproject.org/files/ENCFF704GKQ/@@download/ENCFF704GKQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/8843697f-5584-440f-9e40-b6282e43e35e/ENCFF704GKQ.fastq.gz ENCFF943KNE fastq fastq reads ENCSR545RUT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 900555911 Bing Ren, UCSD 927506ac84903de6285de4edf1081c15 SRA:SRR3652343 https://www.encodeproject.org/files/ENCFF943KNE/@@download/ENCFF943KNE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/3ca5946e-7995-4220-8f83-ccb4de286b03/ENCFF943KNE.fastq.gz ENCFF355HNE bam bam unfiltered alignments mm10 ENCSR545RUT Control ChIP-seq /mouse-donors/ENCDO956IXV/ 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ENCFF160VSE bam bam alignments mm10 ENCSR545RUT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF532FXB/, /files/ENCFF704GKQ/, /files/ENCFF905ZVU/ 2494917020 ENCODE Processing Pipeline 0128fe6f94f6e4a18eefaf141bfda7c1 https://www.encodeproject.org/files/ENCFF160VSE/@@download/ENCFF160VSE.bam released s3://encode-public/2016/07/18/8a46f184-685a-4077-8585-d2ea3cabac99/ENCFF160VSE.bam ENCODE3 mm10 archived ENCFF048BGA bam bam alignments mm10 ENCSR545RUT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF418BAW/, /files/ENCFF943KNE/ 2796238806 ENCODE Processing Pipeline eeacd3a5a38b58e53559bf0b7c7d7969 https://www.encodeproject.org/files/ENCFF048BGA/@@download/ENCFF048BGA.bam released s3://encode-public/2016/07/18/08b10945-2468-4c09-a239-e1bd061eb11b/ENCFF048BGA.bam ENCODE3 mm10 archived ENCFF664CCP bam bam alignments mm10 ENCSR545RUT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF418BAW/, /files/ENCFF943KNE/, /files/ENCFF309GLL/ 2885496783 ENCODE Processing Pipeline 8d02b8a14b8aa72e5dce45a3954ba344 https://www.encodeproject.org/files/ENCFF664CCP/@@download/ENCFF664CCP.bam released s3://encode-public/2020/10/08/ab2c68c6-7acc-46cb-92ec-53d016380935/ENCFF664CCP.bam ENCODE4 v1.5.1 mm10 released ENCFF434RNV bam bam unfiltered alignments mm10 ENCSR545RUT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF905ZVU/, /files/ENCFF532FXB/, /files/ENCFF309GLL/, /files/ENCFF704GKQ/ 3579837786 ENCODE Processing Pipeline 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/files/ENCFF905ZVU/, /files/ENCFF532FXB/, /files/ENCFF309GLL/, /files/ENCFF704GKQ/ 2590004456 ENCODE Processing Pipeline 9c82714ae4876a9b6ccd7589fa69e7ba https://www.encodeproject.org/files/ENCFF451WYT/@@download/ENCFF451WYT.bam released s3://encode-public/2020/10/08/abe2ba2d-924b-4b13-bbc6-aa906e931ab5/ENCFF451WYT.bam ENCODE4 v1.5.1 mm10 released ENCFF369ZWL fastq fastq reads ENCSR963MOG Control ChIP-seq /human-donors/ENCDO632AGT/ EFO:0007099 iPS-11a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 686464845 Zhiping Weng, UMass 0dbb7c6177df6cdec91e396e7eaea6e5 SRA:SRR1068429 https://www.encodeproject.org/files/ENCFF369ZWL/@@download/ENCFF369ZWL.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/19/fc8ffb28-dff8-487b-8f06-b12c486040a2/ENCFF369ZWL.fastq.gz low read depth, low read length ENCFF859OPV bam bam unfiltered alignments hg19 ENCSR963MOG Control ChIP-seq /human-donors/ENCDO632AGT/ EFO:0007099 iPS-11a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF369ZWL/ 815532853 ENCODE Processing Pipeline 15fc26071b7e21729fde7a91a97d94b6 https://www.encodeproject.org/files/ENCFF859OPV/@@download/ENCFF859OPV.bam released s3://encode-public/2016/12/19/a87ee19d-93fc-4582-be19-c2c1d5c40789/ENCFF859OPV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF846MWL bam bam unfiltered alignments GRCh38 ENCSR963MOG Control ChIP-seq /human-donors/ENCDO632AGT/ EFO:0007099 iPS-11a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF369ZWL/ 819919694 ENCODE Processing Pipeline 6cfd103338af16e9d9042edd988df416 https://www.encodeproject.org/files/ENCFF846MWL/@@download/ENCFF846MWL.bam released s3://encode-public/2016/12/19/80fc5d1d-adf6-4396-a905-12471a2cf621/ENCFF846MWL.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF150YHJ bam bam alignments hg19 ENCSR963MOG Control ChIP-seq /human-donors/ENCDO632AGT/ EFO:0007099 iPS-11a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF369ZWL/ 571246257 ENCODE Processing Pipeline 72443ab85d14cce6b0d226b19072911c https://www.encodeproject.org/files/ENCFF150YHJ/@@download/ENCFF150YHJ.bam released s3://encode-public/2016/12/19/a1bbaee4-908f-4293-bc02-774f55f8c87c/ENCFF150YHJ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF502KIX bam bam alignments GRCh38 ENCSR963MOG Control ChIP-seq /human-donors/ENCDO632AGT/ EFO:0007099 iPS-11a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF369ZWL/ 571204721 ENCODE Processing Pipeline c394a0735f37cfb8bd031e1f7e1eaf78 https://www.encodeproject.org/files/ENCFF502KIX/@@download/ENCFF502KIX.bam released s3://encode-public/2016/12/19/7ff946b6-ba65-48e4-ac0e-44823b0f4b73/ENCFF502KIX.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF863HIG bam bam unfiltered alignments GRCh38 ENCSR963MOG Control ChIP-seq /human-donors/ENCDO632AGT/ EFO:0007099 iPS-11a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF369ZWL/, /files/ENCFF110MCL/ 796649581 ENCODE Processing Pipeline 8476027c34080cb51133e26edccb7a2b https://www.encodeproject.org/files/ENCFF863HIG/@@download/ENCFF863HIG.bam released s3://encode-public/2020/10/08/30f9a427-3061-4b15-9e33-0076a8243d0e/ENCFF863HIG.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF427QSF bam bam alignments GRCh38 ENCSR963MOG Control ChIP-seq /human-donors/ENCDO632AGT/ EFO:0007099 iPS-11a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF369ZWL/, /files/ENCFF110MCL/ 614079956 ENCODE Processing Pipeline fe727fb20594d2b47f6ee45f78a95738 https://www.encodeproject.org/files/ENCFF427QSF/@@download/ENCFF427QSF.bam released s3://encode-public/2020/10/08/681d23ae-c57b-41fb-83ef-2254fcc07715/ENCFF427QSF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF487QTZ tagAlign tagAlign alignments hg19 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/ENCFF500BRG/, /files/ENCFF057JTH/, /files/ENCFF687IMZ/ 193645071 Anshul Kundaje, Stanford e586ac58e218138eee2b2873cddd1e6b https://www.encodeproject.org/files/ENCFF487QTZ/@@download/ENCFF487QTZ.tagAlign.gz archived s3://encode-public/2016/03/30/0df38925-9674-48bf-853b-7d83695fe4da/ENCFF487QTZ.tagAlign.gz Lab custom hg19 archived low read length ENCFF497ETK bam bam redacted unfiltered alignments GRCh38 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF057JTH/, /files/ENCFF643CGH/, /files/ENCFF687IMZ/, /files/ENCFF500BRG/ 598582451 ENCODE Processing Pipeline 97d4647a30a0e11ae505e65ef75c2bfa https://www.encodeproject.org/files/ENCFF497ETK/@@download/ENCFF497ETK.bam released s3://encode-public/2018/01/18/7ee8ad06-aba3-454b-aecf-b9282c9f44d7/ENCFF497ETK.bam ENCODE3 GRCh38 archived low read length ENCFF079EZT bam bam redacted alignments GRCh38 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF057JTH/, /files/ENCFF643CGH/, /files/ENCFF687IMZ/, /files/ENCFF500BRG/ 408955936 ENCODE Processing Pipeline 1e82b51b350e3473bda1522199e30345 https://www.encodeproject.org/files/ENCFF079EZT/@@download/ENCFF079EZT.bam released s3://encode-public/2018/01/18/62136a34-8476-4296-bc82-e8549a0adcce/ENCFF079EZT.bam ENCODE3 GRCh38 archived low read length ENCFF933YVJ bam bam redacted unfiltered alignments GRCh38 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 36 /files/ENCFF229QTT/, /files/ENCFF643CGH/, /files/ENCFF125KUA/, /files/ENCFF334PMW/ 476117449 ENCODE Processing Pipeline f22cf1793a1c876754c452a3cbd68807 https://www.encodeproject.org/files/ENCFF933YVJ/@@download/ENCFF933YVJ.bam released s3://encode-public/2018/01/18/029a7b94-5226-41f4-bac7-0ef6fefd513e/ENCFF933YVJ.bam ENCODE3 GRCh38 archived low read length ENCFF098OGE bam bam redacted alignments GRCh38 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 36 /files/ENCFF229QTT/, /files/ENCFF643CGH/, /files/ENCFF125KUA/, /files/ENCFF334PMW/ 335846211 ENCODE Processing Pipeline 87aac460f7bae43c889fc5288f51e68e https://www.encodeproject.org/files/ENCFF098OGE/@@download/ENCFF098OGE.bam released s3://encode-public/2018/01/18/2f3cded9-4554-47e5-a926-aa0f9d26726c/ENCFF098OGE.bam ENCODE3 GRCh38 archived low read length ENCFF512YRG bam bam redacted unfiltered alignments hg19 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 36 /files/ENCFF229QTT/, /files/ENCFF807MUK/, /files/ENCFF125KUA/, /files/ENCFF334PMW/ 470918564 ENCODE Processing Pipeline 824940800d1b726dc5b67e726c7b2a17 https://www.encodeproject.org/files/ENCFF512YRG/@@download/ENCFF512YRG.bam released s3://encode-public/2018/01/19/e5363546-fa8b-431c-90c8-ef17a5393689/ENCFF512YRG.bam ENCODE3 hg19 archived low read length ENCFF719RQC bam bam redacted alignments hg19 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 36 /files/ENCFF229QTT/, /files/ENCFF807MUK/, /files/ENCFF125KUA/, /files/ENCFF334PMW/ 335860271 ENCODE Processing Pipeline fb947eb5ff1a5cfcc5b28787f99a7272 https://www.encodeproject.org/files/ENCFF719RQC/@@download/ENCFF719RQC.bam released s3://encode-public/2018/01/19/ec5cf584-d74d-409e-8296-aca69b4078fb/ENCFF719RQC.bam ENCODE3 hg19 archived low read length ENCFF795IHO bam bam redacted unfiltered alignments hg19 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF057JTH/, /files/ENCFF807MUK/, /files/ENCFF687IMZ/, /files/ENCFF500BRG/ 592080873 ENCODE Processing Pipeline 8fa65b83f0fdcd005b08209d07c3ef10 https://www.encodeproject.org/files/ENCFF795IHO/@@download/ENCFF795IHO.bam released s3://encode-public/2018/01/19/7f0a46b4-1fb7-4759-a3b3-dc6da233962f/ENCFF795IHO.bam ENCODE3 hg19 archived low read length ENCFF880RNV bam bam redacted alignments hg19 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF057JTH/, /files/ENCFF807MUK/, /files/ENCFF687IMZ/, /files/ENCFF500BRG/ 408934413 ENCODE Processing Pipeline e3be59a700997265425e7af210869999 https://www.encodeproject.org/files/ENCFF880RNV/@@download/ENCFF880RNV.bam released s3://encode-public/2018/01/19/d2dc507d-ad8f-41e1-b008-6478a5e4b11b/ENCFF880RNV.bam ENCODE3 hg19 archived low read length ENCFF694UUB bam bam redacted alignments GRCh38 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF687IMZ/, /files/ENCFF500BRG/, /files/ENCFF110MCL/, /files/ENCFF057JTH/ 1254348273 ENCODE Processing Pipeline 8ff2da068a28db1374b402c5d4252347 https://www.encodeproject.org/files/ENCFF694UUB/@@download/ENCFF694UUB.bam released s3://encode-public/2021/01/28/b2f975ca-72a3-498a-9c2d-75f96e99438f/ENCFF694UUB.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF968RRX bam bam redacted alignments GRCh38 ENCSR123WDC Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000909 CD8-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 36 /files/ENCFF334PMW/, /files/ENCFF229QTT/, /files/ENCFF110MCL/, /files/ENCFF125KUA/ 1040823053 ENCODE Processing Pipeline 97ce9f1baa422d536c8cae9011190fbf https://www.encodeproject.org/files/ENCFF968RRX/@@download/ENCFF968RRX.bam released s3://encode-public/2021/01/28/f917301f-ef67-479d-b8bd-87f35677b7aa/ENCFF968RRX.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF335QCC bam bam unfiltered alignments hg19 ENCSR713NUS Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF563LBV/, /files/ENCFF053XWI/ 2115787923 ENCODE Processing Pipeline f80152a57be9d43ba8163b2330e23caf https://www.encodeproject.org/files/ENCFF335QCC/@@download/ENCFF335QCC.bam released s3://encode-public/2018/02/22/bc8ca558-054b-4469-8a7b-6a826dbfab84/ENCFF335QCC.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF563LBV fastq fastq reads ENCSR713NUS Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 826225827 Kevin White, UChicago 55e4e5ac74e5f4ec5dc230ca7342b811 SRA:SRR6213963 https://www.encodeproject.org/files/ENCFF563LBV/@@download/ENCFF563LBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released s3://encode-public/2016/03/14/cc9f58fe-2bf3-42cf-a46c-cfacc3e0b93c/ENCFF563LBV.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF053XWI fastq fastq reads ENCSR713NUS Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1109369192 Kevin White, UChicago 72bcb2a98d92acebeff25d6e82ffdbbf SRA:SRR6213964 https://www.encodeproject.org/files/ENCFF053XWI/@@download/ENCFF053XWI.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released s3://encode-public/2016/03/26/26bc349e-1286-42b3-b287-7beb6f380bf8/ENCFF053XWI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF676IWT bam bam alignments hg19 ENCSR713NUS Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF563LBV/, /files/ENCFF053XWI/ 1677871224 ENCODE Processing Pipeline 9b6af0669df8964ba93023ae6ce5ab72 https://www.encodeproject.org/files/ENCFF676IWT/@@download/ENCFF676IWT.bam released s3://encode-public/2016/04/23/5ff7bd59-986a-4289-b52b-07715f87bdf5/ENCFF676IWT.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF820QYF bam bam unfiltered alignments GRCh38 ENCSR713NUS Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription 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'@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF563LBV/, /files/ENCFF053XWI/ 1677602965 ENCODE Processing Pipeline f9492434c908e6f5fe5069eecb480fee https://www.encodeproject.org/files/ENCFF156EDZ/@@download/ENCFF156EDZ.bam released s3://encode-public/2016/05/06/49943439-34eb-4741-8a9e-e726b42ec798/ENCFF156EDZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF479RQE bam bam alignments GRCh38 ENCSR713NUS Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF563LBV/, /files/ENCFF110MCL/, /files/ENCFF053XWI/ 1777294596 ENCODE Processing Pipeline 32637a60f79cfb688b58edc38630d424 https://www.encodeproject.org/files/ENCFF479RQE/@@download/ENCFF479RQE.bam released s3://encode-public/2020/10/27/ece6944b-24c4-4ba7-9c49-36042dbba154/ENCFF479RQE.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF798TTH bam bam unfiltered alignments GRCh38 ENCSR713NUS Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF563LBV/, /files/ENCFF110MCL/, /files/ENCFF053XWI/ 2123694745 ENCODE Processing Pipeline 5dd1e10fee4ae718e254b61ec58df2df https://www.encodeproject.org/files/ENCFF798TTH/@@download/ENCFF798TTH.bam released s3://encode-public/2020/10/27/4565a34a-57ac-4f95-bbf3-b8d908231408/ENCFF798TTH.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF427AOF fastq fastq reads ENCSR170TEC Control ChIP-seq /worm-donors/ENCDO719ZTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176450/'], '@type': ['Target', 'Item'], 'name': 'tbx-8-celegans', 'label': 'tbx-8', '@id': '/targets/tbx-8-celegans/', 'title': 'tbx-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52b0ad77-afa0-4748-a124-a122830289c7', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 520097243 Kevin White, UChicago ef3432415dcd7e7c946c7d27818a513b https://www.encodeproject.org/files/ENCFF427AOF/@@download/ENCFF427AOF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/e9695b06-c48f-4fab-ab33-551d5b7aee87/ENCFF427AOF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF642QER bam bam alignments ce11 ENCSR170TEC Control ChIP-seq /worm-donors/ENCDO719ZTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176450/'], '@type': ['Target', 'Item'], 'name': 'tbx-8-celegans', 'label': 'tbx-8', '@id': '/targets/tbx-8-celegans/', 'title': 'tbx-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52b0ad77-afa0-4748-a124-a122830289c7', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF427AOF/, /files/ENCFF586MOL/ 678281246 Kevin White, UChicago 808d5c9e05e36c9214c7fa917b3d7c20 https://www.encodeproject.org/files/ENCFF642QER/@@download/ENCFF642QER.bam released s3://encode-public/2018/03/01/e2d6bccb-1cfb-4fba-bebf-cbca97cf8d13/ENCFF642QER.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF026IOL bigWig bigWig read-depth normalized signal ce11 ENCSR170TEC Control ChIP-seq /worm-donors/ENCDO719ZTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176450/'], '@type': ['Target', 'Item'], 'name': 'tbx-8-celegans', 'label': 'tbx-8', '@id': '/targets/tbx-8-celegans/', 'title': 'tbx-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52b0ad77-afa0-4748-a124-a122830289c7', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF642QER/ 9959505 Kevin White, UChicago 3bca47f1cdf9bb57fa9b480ead17d848 https://www.encodeproject.org/files/ENCFF026IOL/@@download/ENCFF026IOL.bigWig released s3://encode-public/2018/03/01/d51a5285-28bc-4b62-b135-dc0b38080fa1/ENCFF026IOL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF814IDT bigWig bigWig signal of unique reads ce11 ENCSR170TEC Control ChIP-seq /worm-donors/ENCDO719ZTH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176450/'], '@type': ['Target', 'Item'], 'name': 'tbx-8-celegans', 'label': 'tbx-8', '@id': '/targets/tbx-8-celegans/', 'title': 'tbx-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52b0ad77-afa0-4748-a124-a122830289c7', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF642QER/ 9950794 Kevin White, UChicago 67417fa2dd645f330a344dd0b8bd92c0 https://www.encodeproject.org/files/ENCFF814IDT/@@download/ENCFF814IDT.bigWig released s3://encode-public/2018/03/01/bc049aa6-e84e-4803-9d18-67575c26c1f3/ENCFF814IDT.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF662WVV fastq fastq reads ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 2513094875 Bradley Bernstein, Broad af20d0b96abde3e87f6093bc09121368 SRA:SRR10837630 https://www.encodeproject.org/files/ENCFF662WVV/@@download/ENCFF662WVV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/6072dc75-e662-4f23-9adb-2902f2776000/ENCFF662WVV.fastq.gz ENCFF833ZZD fastq fastq reads ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 2453704693 Bradley Bernstein, Broad f9028e2bf513f5487b91651d5870c1b8 SRA:SRR10837631 https://www.encodeproject.org/files/ENCFF833ZZD/@@download/ENCFF833ZZD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/34cab5c9-04a3-4df6-bbff-7e35cbb2f6ad/ENCFF833ZZD.fastq.gz ENCFF877NGA bam bam unfiltered alignments hg19 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF833ZZD/, /files/ENCFF076AOX/, /files/ENCFF807MUK/, /files/ENCFF331ATS/, /files/ENCFF662WVV/ 8203412117 ENCODE Processing Pipeline 18dbfaf9d963a34d5fbe8c25c1ec204c https://www.encodeproject.org/files/ENCFF877NGA/@@download/ENCFF877NGA.bam released s3://encode-public/2018/06/16/bded8113-35be-43e8-a403-3f8bd15a43a4/ENCFF877NGA.bam ENCODE3 hg19 archived ENCFF777QRE bam bam unfiltered alignments GRCh38 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF833ZZD/, /files/ENCFF076AOX/, /files/ENCFF331ATS/, /files/ENCFF662WVV/, /files/ENCFF643CGH/ 8221607440 ENCODE Processing Pipeline 0d3b2298ab86aa6b30478a3254ef7c31 https://www.encodeproject.org/files/ENCFF777QRE/@@download/ENCFF777QRE.bam released s3://encode-public/2018/06/16/e110804d-fe10-4d87-8250-8df7d0358ffe/ENCFF777QRE.bam ENCODE3 GRCh38 archived ENCFF145GMT bam bam alignments GRCh38 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF833ZZD/, /files/ENCFF076AOX/, /files/ENCFF331ATS/, /files/ENCFF662WVV/, /files/ENCFF643CGH/ 6645749668 ENCODE Processing Pipeline cb25287ae857551ec988ee383df8115c https://www.encodeproject.org/files/ENCFF145GMT/@@download/ENCFF145GMT.bam released s3://encode-public/2018/06/16/41966537-5d8a-4939-95f3-03875f848ab4/ENCFF145GMT.bam ENCODE3 GRCh38 archived ENCFF055GAM bam bam alignments hg19 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF833ZZD/, /files/ENCFF076AOX/, /files/ENCFF807MUK/, /files/ENCFF331ATS/, /files/ENCFF662WVV/ 6636772710 ENCODE Processing Pipeline 1bcdde52ecbf2b33126e993e8e9d2b9d https://www.encodeproject.org/files/ENCFF055GAM/@@download/ENCFF055GAM.bam released s3://encode-public/2018/06/16/fe78d67b-02f3-4086-9307-ff29c258963d/ENCFF055GAM.bam ENCODE3 hg19 archived ENCFF331ATS fastq fastq reads ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 2203441955 Bradley Bernstein, Broad 6b925b1fb513e71539c31613d9f7a136 SRA:SRR10837632 https://www.encodeproject.org/files/ENCFF331ATS/@@download/ENCFF331ATS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/93ab6fd0-0857-4c73-9f82-2d980cfe6773/ENCFF331ATS.fastq.gz ENCFF076AOX fastq fastq reads ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 2254686054 Bradley Bernstein, Broad 252f089c3dabc6b788e5737f04d3669d SRA:SRR10837633 https://www.encodeproject.org/files/ENCFF076AOX/@@download/ENCFF076AOX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/51b70f5f-63e5-4331-ba69-3f78f9cef5bc/ENCFF076AOX.fastq.gz ENCFF317TRG bam bam unfiltered alignments hg19 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF076AOX/, /files/ENCFF807MUK/, /files/ENCFF331ATS/ 4104988308 ENCODE Processing Pipeline 0dea7d25644927908f21bf75f62001cc https://www.encodeproject.org/files/ENCFF317TRG/@@download/ENCFF317TRG.bam archived s3://encode-public/2017/12/07/21ad40f9-f1fc-4a55-ab3e-a75f16193ed8/ENCFF317TRG.bam ENCODE3 hg19 archived ENCFF306XHS bam bam alignments hg19 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 /files/ENCFF076AOX/, /files/ENCFF807MUK/, /files/ENCFF331ATS/ 3419098433 ENCODE Processing Pipeline 0ae97f974d11331db840ae182a832e26 https://www.encodeproject.org/files/ENCFF306XHS/@@download/ENCFF306XHS.bam archived s3://encode-public/2017/12/07/f9198a5b-1230-4560-809e-9342b7b141a9/ENCFF306XHS.bam ENCODE3 hg19 archived ENCFF663QYU bam bam unfiltered alignments GRCh38 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF833ZZD/, /files/ENCFF331ATS/, /files/ENCFF076AOX/, /files/ENCFF110MCL/, /files/ENCFF662WVV/ 8339630040 ENCODE Processing Pipeline b87eaafda27798ed834367ed944677de https://www.encodeproject.org/files/ENCFF663QYU/@@download/ENCFF663QYU.bam released s3://encode-public/2020/09/20/b0246aa7-047f-4d46-a847-0be0a73c1d2d/ENCFF663QYU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF539YXJ bam bam alignments GRCh38 ENCSR234FYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF833ZZD/, /files/ENCFF331ATS/, /files/ENCFF076AOX/, /files/ENCFF110MCL/, /files/ENCFF662WVV/ 6759363587 ENCODE Processing Pipeline 1adab56ebceb902c1e63ea46b763b26f https://www.encodeproject.org/files/ENCFF539YXJ/@@download/ENCFF539YXJ.bam released s3://encode-public/2020/09/20/72531b11-6a0d-4539-9ec6-abc1381d5fc1/ENCFF539YXJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF922ZPJ fastq fastq reads ENCSR818AKL Control ChIP-seq /fly-donors/ENCDO822VCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39203/'], '@type': ['Target', 'Item'], 'name': 'E(z)-dmelanogaster', 'label': 'E(z)', '@id': '/targets/E(z)-dmelanogaster/', 'title': 'E(z) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'f9ec201e-101e-4107-bd87-f6b3de820540', 'status': 'released'} dm3 3L 10624026 10646570 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 524040486 Kevin White, UChicago 3355de5498a343082c13a7882d6115e3 https://www.encodeproject.org/files/ENCFF922ZPJ/@@download/ENCFF922ZPJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/09/7353fd78-2141-436b-ba63-3ab800605b17/ENCFF922ZPJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF733GRJ bam bam alignments dm3 ENCSR818AKL Control ChIP-seq /fly-donors/ENCDO822VCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39203/'], '@type': ['Target', 'Item'], 'name': 'E(z)-dmelanogaster', 'label': 'E(z)', '@id': '/targets/E(z)-dmelanogaster/', 'title': 'E(z) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'f9ec201e-101e-4107-bd87-f6b3de820540', 'status': 'released'} dm3 3L 10624026 10646570 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF059UHX/, /files/ENCFF922ZPJ/ 616252220 Kevin White, UChicago afc9d1c61d88c65e9ccf7fd9cc78705d https://www.encodeproject.org/files/ENCFF733GRJ/@@download/ENCFF733GRJ.bam released s3://encode-public/2016/04/10/9c8d8a6e-6d64-4550-be54-7814f20841e9/ENCFF733GRJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF029HQM bigWig bigWig signal of unique reads dm3 ENCSR818AKL Control ChIP-seq /fly-donors/ENCDO822VCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39203/'], '@type': ['Target', 'Item'], 'name': 'E(z)-dmelanogaster', 'label': 'E(z)', '@id': '/targets/E(z)-dmelanogaster/', 'title': 'E(z) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'f9ec201e-101e-4107-bd87-f6b3de820540', 'status': 'released'} dm3 3L 10624026 10646570 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF733GRJ/ 15110739 Kevin White, UChicago 907d966956d37ffc0b7ac979e04c47d5 https://www.encodeproject.org/files/ENCFF029HQM/@@download/ENCFF029HQM.bigWig released s3://encode-public/2016/04/11/61d822d3-dcf5-4fad-9654-9cd7f855de2f/ENCFF029HQM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF493LMH bigWig bigWig read-depth normalized signal dm3 ENCSR818AKL Control ChIP-seq /fly-donors/ENCDO822VCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39203/'], '@type': ['Target', 'Item'], 'name': 'E(z)-dmelanogaster', 'label': 'E(z)', '@id': '/targets/E(z)-dmelanogaster/', 'title': 'E(z) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'f9ec201e-101e-4107-bd87-f6b3de820540', 'status': 'released'} dm3 3L 10624026 10646570 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF733GRJ/ 15122453 Kevin White, UChicago ab428a65e597f018576b0dd4a3e7a7a8 https://www.encodeproject.org/files/ENCFF493LMH/@@download/ENCFF493LMH.bigWig released s3://encode-public/2016/04/11/aebde00a-9575-482d-b5fe-a846de2cdf66/ENCFF493LMH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF587EEP bam bam alignments dm6 ENCSR818AKL Control ChIP-seq /fly-donors/ENCDO822VCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39203/'], '@type': ['Target', 'Item'], 'name': 'E(z)-dmelanogaster', 'label': 'E(z)', '@id': '/targets/E(z)-dmelanogaster/', 'title': 'E(z) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'f9ec201e-101e-4107-bd87-f6b3de820540', 'status': 'released'} dm3 3L 10624026 10646570 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF479RCH/, /files/ENCFF922ZPJ/ 614301449 Kevin White, UChicago 597a00e5700e057fff391cb2f2b5a504 https://www.encodeproject.org/files/ENCFF587EEP/@@download/ENCFF587EEP.bam released s3://encode-public/2016/04/21/4bf98131-7e9b-4fe8-855d-a1ddccdbc18a/ENCFF587EEP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF061IMS bigWig bigWig signal of unique reads dm6 ENCSR818AKL Control ChIP-seq /fly-donors/ENCDO822VCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39203/'], '@type': ['Target', 'Item'], 'name': 'E(z)-dmelanogaster', 'label': 'E(z)', '@id': '/targets/E(z)-dmelanogaster/', 'title': 'E(z) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'f9ec201e-101e-4107-bd87-f6b3de820540', 'status': 'released'} dm3 3L 10624026 10646570 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF587EEP/ 17195031 Kevin White, UChicago a869557bdc906768b81e21fee5c908f1 https://www.encodeproject.org/files/ENCFF061IMS/@@download/ENCFF061IMS.bigWig released s3://encode-public/2016/06/21/60a16a39-7afd-4dec-a3d7-81732e3afef7/ENCFF061IMS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF835OVK bigWig bigWig read-depth normalized signal dm6 ENCSR818AKL Control ChIP-seq /fly-donors/ENCDO822VCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39203/'], '@type': ['Target', 'Item'], 'name': 'E(z)-dmelanogaster', 'label': 'E(z)', '@id': '/targets/E(z)-dmelanogaster/', 'title': 'E(z) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'f9ec201e-101e-4107-bd87-f6b3de820540', 'status': 'released'} dm3 3L 10624026 10646570 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF587EEP/ 17207975 Kevin White, UChicago 2d62187185233a1d76f1aac720739f62 https://www.encodeproject.org/files/ENCFF835OVK/@@download/ENCFF835OVK.bigWig released s3://encode-public/2016/06/21/1b61aa94-0978-4fdd-a9a8-5244e666a5bd/ENCFF835OVK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF563YGG fastq fastq reads ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 74343070 Kevin White, UChicago e0167ea1efe5d0ba089005e90b2ea2ad https://www.encodeproject.org/files/ENCFF563YGG/@@download/ENCFF563YGG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/10/06/00366c36-f8ea-4131-9318-2719d6ca7206/ENCFF563YGG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF434EOL fastq fastq reads ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1173548159 Kevin White, UChicago 9cdf976673a43ba984f17cd4a567afde https://www.encodeproject.org/files/ENCFF434EOL/@@download/ENCFF434EOL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/06/c14bfd6a-3019-466e-8f03-a4e3558529fb/ENCFF434EOL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF956JIF bam bam alignments ce10 ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF563YGG/, /files/ENCFF434EOL/ 1610332765 Kevin White, UChicago 5f1c2c68ec01f40ddd04ed62bf000b94 https://www.encodeproject.org/files/ENCFF956JIF/@@download/ENCFF956JIF.bam released s3://encode-public/2017/10/06/9b1e10c0-071c-4993-a7cb-720515835620/ENCFF956JIF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF904QIE bam bam alignments ce11 ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF563YGG/, /files/ENCFF434EOL/ 1611706088 Kevin White, UChicago 9a4d6e322d0aa5e2d8f39ff024813aaa https://www.encodeproject.org/files/ENCFF904QIE/@@download/ENCFF904QIE.bam released s3://encode-public/2017/10/07/11b895e9-b8fb-4ed0-9d17-ae9a0871604e/ENCFF904QIE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF810FMN bigWig bigWig signal of unique reads ce10 ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF956JIF/ 9973474 Kevin White, UChicago 676f651ff90bc7b26d2f78458556bc75 https://www.encodeproject.org/files/ENCFF810FMN/@@download/ENCFF810FMN.bigWig released s3://encode-public/2017/10/09/d18adca7-a62e-4113-8792-870cf89b0016/ENCFF810FMN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF180LQJ bigWig bigWig read-depth normalized signal ce10 ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF956JIF/ 9928678 Kevin White, UChicago 9f55308e88ffcc91f498345cb94efc40 https://www.encodeproject.org/files/ENCFF180LQJ/@@download/ENCFF180LQJ.bigWig released s3://encode-public/2017/10/09/7cbbc9d3-6519-435e-a6e7-bb0ba9effed1/ENCFF180LQJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF976XKV bigWig bigWig signal of unique reads ce11 ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF904QIE/ 9970989 Kevin White, UChicago 99034ce1e661c0620f24035d941861bf https://www.encodeproject.org/files/ENCFF976XKV/@@download/ENCFF976XKV.bigWig released s3://encode-public/2017/10/09/b7586be9-d6d1-4469-8a51-b162d9345748/ENCFF976XKV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF190OBP bigWig bigWig read-depth normalized signal ce11 ENCSR745QHO Control ChIP-seq /worm-donors/ENCDO735YHK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182547/'], '@type': ['Target', 'Item'], 'name': 'sox-4-celegans', 'label': 'sox-4', '@id': '/targets/sox-4-celegans/', 'title': 'sox-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd66fb071-f741-49f3-94c6-a73325b592a4', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF904QIE/ 9924597 Kevin White, UChicago cdf2d01cc877fb00523a0a046c5c5c3a https://www.encodeproject.org/files/ENCFF190OBP/@@download/ENCFF190OBP.bigWig released s3://encode-public/2017/10/09/72e85baa-7e99-4552-974e-84d25ec146be/ENCFF190OBP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF211YDV fastq fastq reads ENCSR932EUA Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 1043744177 Kevin White, UChicago da542d4a698d0f5f90033b966e338076 https://www.encodeproject.org/files/ENCFF211YDV/@@download/ENCFF211YDV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/09/01/4dc1de4f-5366-4c9b-bbeb-29aea0c2726d/ENCFF211YDV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF140RKS bam bam alignments dm3 ENCSR932EUA Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF211YDV/ 1311091688 Kevin White, UChicago 41e4cc7f554f613a18d245fe190cf428 https://www.encodeproject.org/files/ENCFF140RKS/@@download/ENCFF140RKS.bam released s3://encode-public/2017/06/20/3768b390-1500-48be-a2a8-000274f4402d/ENCFF140RKS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF442JPB bam bam alignments dm6 ENCSR932EUA Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF211YDV/ 1310188996 Kevin White, UChicago e5efbaf9c43c94d1110e581c9969e318 https://www.encodeproject.org/files/ENCFF442JPB/@@download/ENCFF442JPB.bam released s3://encode-public/2017/06/28/3cfc1c99-e7f6-44ab-bd58-fbf7148e265a/ENCFF442JPB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF503UQI bigWig bigWig signal of unique reads dm3 ENCSR932EUA Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF140RKS/ 15476837 Kevin White, UChicago 9fbb75c0c85b078435deea0c64f160ba https://www.encodeproject.org/files/ENCFF503UQI/@@download/ENCFF503UQI.bigWig released s3://encode-public/2017/06/29/b6c691bf-8353-4ddc-ac65-40eda3523fce/ENCFF503UQI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF843AXK bigWig bigWig read-depth normalized signal dm3 ENCSR932EUA Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF140RKS/ 15490921 Kevin White, UChicago 3996ef2c72cecb3ddfa0f4d703e8ace2 https://www.encodeproject.org/files/ENCFF843AXK/@@download/ENCFF843AXK.bigWig released s3://encode-public/2017/06/29/8c7b3d3a-07b1-4876-93b0-db321a7ecc57/ENCFF843AXK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF951THO bigWig bigWig read-depth normalized signal dm6 ENCSR932EUA Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF442JPB/ 17627180 Kevin White, UChicago b5d315489e66d038dd4e1e16d3fb0342 https://www.encodeproject.org/files/ENCFF951THO/@@download/ENCFF951THO.bigWig released s3://encode-public/2017/06/30/8924cefc-258e-46da-b5be-1375c3825573/ENCFF951THO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF567UHO bigWig bigWig signal of unique reads dm6 ENCSR932EUA Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF442JPB/ 17612898 Kevin White, UChicago 7ad0cd66e0d74bfa169da4c8f47a2dec https://www.encodeproject.org/files/ENCFF567UHO/@@download/ENCFF567UHO.bigWig released s3://encode-public/2017/06/30/d2d9cde5-663e-49fc-83f9-0bdd99da9935/ENCFF567UHO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF610ZGQ fastq fastq reads ENCSR821PFS Control ChIP-seq /worm-donors/ENCDO330ZYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183204/'], '@type': ['Target', 'Item'], 'name': 'zip-5-celegans', 'label': 'zip-5', '@id': '/targets/zip-5-celegans/', 'title': 'zip-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '68ef5d0b-9d8f-4202-8134-ef0b366087aa', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 568967035 Kevin White, UChicago 18026087e310a87e9290927680d3c43a https://www.encodeproject.org/files/ENCFF610ZGQ/@@download/ENCFF610ZGQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/883e0a63-4b7f-4cc3-83cc-e551e3638bda/ENCFF610ZGQ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF927FSR bam bam alignments ce10 ENCSR821PFS Control ChIP-seq /worm-donors/ENCDO330ZYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183204/'], '@type': ['Target', 'Item'], 'name': 'zip-5-celegans', 'label': 'zip-5', '@id': '/targets/zip-5-celegans/', 'title': 'zip-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '68ef5d0b-9d8f-4202-8134-ef0b366087aa', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF610ZGQ/ 682986494 Kevin White, UChicago 765a0febc3e2a9f3c4f4f67e201547be https://www.encodeproject.org/files/ENCFF927FSR/@@download/ENCFF927FSR.bam released s3://encode-public/2015/08/07/21bf73b3-7a50-4351-86f7-4642f650ebc3/ENCFF927FSR.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF334EFL bigWig bigWig read-depth normalized signal ce10 ENCSR821PFS Control ChIP-seq /worm-donors/ENCDO330ZYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183204/'], '@type': ['Target', 'Item'], 'name': 'zip-5-celegans', 'label': 'zip-5', '@id': '/targets/zip-5-celegans/', 'title': 'zip-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '68ef5d0b-9d8f-4202-8134-ef0b366087aa', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF927FSR/ 10015985 Kevin White, UChicago 3b6c335e9e6ecfd05ec996b1c7f38827 https://www.encodeproject.org/files/ENCFF334EFL/@@download/ENCFF334EFL.bigWig released s3://encode-public/2015/10/02/a94a05c2-a62e-4afe-9291-b7421b9b5263/ENCFF334EFL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF013SIA bigWig bigWig signal of unique reads ce10 ENCSR821PFS Control ChIP-seq /worm-donors/ENCDO330ZYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183204/'], '@type': ['Target', 'Item'], 'name': 'zip-5-celegans', 'label': 'zip-5', '@id': '/targets/zip-5-celegans/', 'title': 'zip-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '68ef5d0b-9d8f-4202-8134-ef0b366087aa', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF610ZGQ/ 683601706 Kevin White, UChicago 0e96c695f75cc7d5f19fbf1c536f0bb7 https://www.encodeproject.org/files/ENCFF882PZB/@@download/ENCFF882PZB.bam released s3://encode-public/2016/01/20/35e00c4f-2d1c-4a58-85e8-88b03e136cc4/ENCFF882PZB.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF292YLZ bigWig bigWig signal of unique reads ce11 ENCSR821PFS Control ChIP-seq /worm-donors/ENCDO330ZYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183204/'], '@type': ['Target', 'Item'], 'name': 'zip-5-celegans', 'label': 'zip-5', '@id': '/targets/zip-5-celegans/', 'title': 'zip-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '68ef5d0b-9d8f-4202-8134-ef0b366087aa', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF882PZB/ 9960398 Kevin White, UChicago 8d4100d41584387bcbcbd81d611d2e1b 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GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF936LQZ bam bam unfiltered alignments hg19 ENCSR009MWG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF896VYC/, /files/ENCFF807MUK/, /files/ENCFF723TPE/ 5980577387 ENCODE Processing Pipeline e78626311563fae53accbeedc1c15ad4 https://www.encodeproject.org/files/ENCFF936LQZ/@@download/ENCFF936LQZ.bam released s3://encode-public/2016/12/06/75cc388c-0413-41d1-b7f9-204e7b8d13a2/ENCFF936LQZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF908GSJ bam bam alignments hg19 ENCSR009MWG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF896VYC/, /files/ENCFF807MUK/, /files/ENCFF723TPE/ 4033062218 ENCODE Processing Pipeline 6dea4c862a00243a2f95bf273e2d938d 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s3://encode-public/2016/11/08/f0017057-1697-449e-a131-2fce743afbd1/ENCFF086ULQ.bam ENCODE3 hg19 archived ENCFF411SNQ bam bam alignments GRCh38 ENCSR293DLP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF141WOU/, /files/ENCFF643CGH/, /files/ENCFF939CSH/ 4461486323 ENCODE Processing Pipeline 37d89edd1e9aa010f3724a0221cd8fa0 https://www.encodeproject.org/files/ENCFF411SNQ/@@download/ENCFF411SNQ.bam released s3://encode-public/2016/11/08/af256a0a-d8d2-4357-873f-597ef8f701c9/ENCFF411SNQ.bam ENCODE3 GRCh38 archived ENCFF417DSR bam bam alignments GRCh38 ENCSR293DLP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF141WOU/, /files/ENCFF939CSH/ 4170380948 ENCODE Processing Pipeline 444fe06c3ccfab1beddc6449347c02b0 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Michael Snyder, Stanford 5565b69d43b3645436114ae25206dc24 SRA:SRR14847289 https://www.encodeproject.org/files/ENCFF532TTF/@@download/ENCFF532TTF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/06eeda32-6cb2-40cb-81ff-1990d3613919/ENCFF532TTF.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF368PMG fastq fastq reads ENCSR698TWO Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2021-03-29 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF532TTF/ 4686683131 Michael Snyder, Stanford cce5c3cf4023e5da135a5d4744965505 SRA:SRR14847289 https://www.encodeproject.org/files/ENCFF368PMG/@@download/ENCFF368PMG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/668a0c9c-b665-4cf9-999e-dc966f373ee0/ENCFF368PMG.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF514EEP bam bam unfiltered alignments GRCh38 ENCSR698TWO Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2021-03-29 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF532TTF/, /files/ENCFF110MCL/, /files/ENCFF368PMG/ 8285987262 ENCODE Processing Pipeline 4a3595f03691a55dd783571fb3ffaff9 https://www.encodeproject.org/files/ENCFF514EEP/@@download/ENCFF514EEP.bam released s3://encode-public/2020/08/20/04730cb6-d1db-4b2a-bd67-509b2cb5a183/ENCFF514EEP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF328UWI bam bam alignments GRCh38 ENCSR698TWO Control ChIP-seq /human-donors/ENCDO220OYR/ EFO:0001221 NCI-H929 cell line Homo sapiens DNA 2021-03-29 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF532TTF/, /files/ENCFF110MCL/, /files/ENCFF368PMG/ 3267445446 ENCODE Processing Pipeline ea97d18017a09fa09208f332aa7a6e87 https://www.encodeproject.org/files/ENCFF328UWI/@@download/ENCFF328UWI.bam released s3://encode-public/2020/08/20/d202e003-c6cf-4c9b-8f53-3891670e0f21/ENCFF328UWI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF395SPX fastq fastq reads ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 441154959 Kevin White, UChicago 4455e0bef7f6a544c080b0302bd4e666 https://www.encodeproject.org/files/ENCFF395SPX/@@download/ENCFF395SPX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/252c5620-b2d2-4282-8c09-68b22b2ec7b6/ENCFF395SPX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF880QMH bam bam alignments ce11 ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF395SPX/, /files/ENCFF406ZIL/, /files/ENCFF586MOL/ 816844065 Kevin White, UChicago 333d1fe22e9ab25f9b14e5c2b3b7ba44 https://www.encodeproject.org/files/ENCFF880QMH/@@download/ENCFF880QMH.bam released s3://encode-public/2018/09/07/645f4792-99ab-44ff-b5f8-7fbf09127b0b/ENCFF880QMH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF406ZIL fastq fastq reads ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 381399798 Kevin White, UChicago becf361d869ad25415d526e6d445d027 https://www.encodeproject.org/files/ENCFF406ZIL/@@download/ENCFF406ZIL.fastq.gz Illumina HiSeq 4000 /files/ENCFF360QTM/ released s3://encode-public/2018/09/06/6b6347cb-3ab7-41c5-8d82-e5f502218351/ENCFF406ZIL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF627KVL bigWig bigWig signal of unique reads ce10 ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF041CTX/ 10012891 Kevin White, UChicago 2f4977ba7aba6547c5b19ae06b060bdf https://www.encodeproject.org/files/ENCFF627KVL/@@download/ENCFF627KVL.bigWig released s3://encode-public/2018/09/10/25376b20-c15e-4010-8e87-450e12cf7910/ENCFF627KVL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF865AMU bigWig bigWig read-depth normalized signal ce10 ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF041CTX/ 10052736 Kevin White, UChicago ac20a24b4d51906567a7337726dcec42 https://www.encodeproject.org/files/ENCFF865AMU/@@download/ENCFF865AMU.bigWig released s3://encode-public/2018/09/10/2f89856a-554d-426f-9fdf-22c355031185/ENCFF865AMU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF041CTX bam bam alignments ce10 ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF395SPX/, /files/ENCFF406ZIL/, /files/ENCFF987UMF/ 816147347 Kevin White, UChicago 62261b345ad8c4247abdaabe38914405 https://www.encodeproject.org/files/ENCFF041CTX/@@download/ENCFF041CTX.bam released s3://encode-public/2018/09/07/695dfba3-e5ea-47e9-bf92-2e7689234eea/ENCFF041CTX.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF330DDJ bigWig bigWig signal of unique reads ce11 ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF880QMH/ 10009902 Kevin White, UChicago dd3da7655ddf67acda62332f4fe569d2 https://www.encodeproject.org/files/ENCFF330DDJ/@@download/ENCFF330DDJ.bigWig released s3://encode-public/2018/09/10/1f404897-8ce9-464d-adf3-91394bce3578/ENCFF330DDJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF260LHW bigWig bigWig read-depth normalized signal ce11 ENCSR545DXH Control ChIP-seq /worm-donors/ENCDO860KCO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191732/'], '@type': ['Target', 'Item'], 'name': 'nhr-85-celegans', 'label': 'nhr-85', '@id': '/targets/nhr-85-celegans/', 'title': 'nhr-85 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '0ae4ee94-9e35-4c81-98db-aedbd067da34', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF880QMH/ 10042062 Kevin White, UChicago 20f33f0f427c9ba65099d962a8d6b49f https://www.encodeproject.org/files/ENCFF260LHW/@@download/ENCFF260LHW.bigWig released s3://encode-public/2018/09/10/91680dba-ca05-494d-a4e4-ce699e719bf0/ENCFF260LHW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization, inconsistent platforms ENCFF437BSD fastq fastq reads ENCSR736BTL Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6668/'], '@type': ['Target', 'Item'], 'name': 'SP2-human', 'label': 'SP2', '@id': '/targets/SP2-human/', 'title': 'SP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '44ed8e7c-216a-407c-a236-2badfc332481', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF259QKU/ 2705587002 Michael Snyder, Stanford 6773b901d2d38f96d9a95cd4b25300c4 SRA:SRR5112026 https://www.encodeproject.org/files/ENCFF437BSD/@@download/ENCFF437BSD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/35ee6db5-f964-4dce-b95e-0e4cba635062/ENCFF437BSD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF259QKU fastq fastq reads ENCSR736BTL Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6668/'], '@type': ['Target', 'Item'], 'name': 'SP2-human', 'label': 'SP2', '@id': '/targets/SP2-human/', 'title': 'SP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '44ed8e7c-216a-407c-a236-2badfc332481', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF437BSD/ 2671082291 Michael Snyder, Stanford 96b9f9ff3615ce26b6f3fee4fe626996 SRA:SRR5112026 https://www.encodeproject.org/files/ENCFF259QKU/@@download/ENCFF259QKU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/2cbe64e5-bebc-488a-840f-75900605edfb/ENCFF259QKU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF215MEK bam bam unfiltered alignments hg19 ENCSR736BTL Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6668/'], '@type': ['Target', 'Item'], 'name': 'SP2-human', 'label': 'SP2', 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6668/'], '@type': ['Target', 'Item'], 'name': 'SP2-human', 'label': 'SP2', '@id': '/targets/SP2-human/', 'title': 'SP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '44ed8e7c-216a-407c-a236-2badfc332481', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF259QKU/, /files/ENCFF807MUK/, /files/ENCFF437BSD/ 4701749156 ENCODE Processing Pipeline 206def503302f40cfb16a8d028a15ebd https://www.encodeproject.org/files/ENCFF223MIL/@@download/ENCFF223MIL.bam released s3://encode-public/2016/09/11/1f160d11-5e83-439e-85dc-970db3dbd76f/ENCFF223MIL.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF910MJF bam bam alignments GRCh38 ENCSR736BTL Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6668/'], '@type': ['Target', 'Item'], 'name': 'SP2-human', 'label': 'SP2', '@id': '/targets/SP2-human/', 'title': 'SP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '44ed8e7c-216a-407c-a236-2badfc332481', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF259QKU/, /files/ENCFF643CGH/, /files/ENCFF437BSD/ 4705417529 ENCODE Processing Pipeline 1cf26d7d2c067c242b5fb4f0400276a7 https://www.encodeproject.org/files/ENCFF910MJF/@@download/ENCFF910MJF.bam released s3://encode-public/2016/09/11/85395a44-0988-4841-b0e2-7078a6d0dd33/ENCFF910MJF.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF788MGE bam bam unfiltered alignments GRCh38 ENCSR736BTL Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6668/'], '@type': ['Target', 'Item'], 'name': 'SP2-human', 'label': 'SP2', '@id': '/targets/SP2-human/', 'title': 'SP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '44ed8e7c-216a-407c-a236-2badfc332481', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF259QKU/, /files/ENCFF437BSD/ 5533032623 ENCODE Processing Pipeline 18d0abc8b7d9ec73b1b9c1e8b479d39d https://www.encodeproject.org/files/ENCFF788MGE/@@download/ENCFF788MGE.bam released s3://encode-public/2020/06/02/a7083b0d-0704-4d58-8dc3-0dadf8af0a79/ENCFF788MGE.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF847EHD bam bam alignments GRCh38 ENCSR736BTL Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6668/'], '@type': ['Target', 'Item'], 'name': 'SP2-human', 'label': 'SP2', '@id': '/targets/SP2-human/', 'title': 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s3://encode-public/2020/07/02/93c69fd5-543b-4eb5-8613-24e770fe7291/ENCFF946IKE.fastq.gz mild to moderate bottlenecking ENCFF039GUB fastq fastq reads ENCSR247FUH Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1011509970 Bradley Bernstein, Broad 82c9b76d701f9ce808ed78e1ea0b6da2 SRA:SRR13804526 https://www.encodeproject.org/files/ENCFF039GUB/@@download/ENCFF039GUB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/7ac75b0b-4c72-4c58-ada0-a5d6b12e992a/ENCFF039GUB.fastq.gz mild to moderate bottlenecking ENCFF777KGX fastq fastq reads ENCSR247FUH Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 713640210 Bradley Bernstein, Broad a42b0d757a75d92b9db580b378e1d9e4 SRA:SRR13804527 https://www.encodeproject.org/files/ENCFF777KGX/@@download/ENCFF777KGX.fastq.gz Illumina HiSeq 2500 released 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https://www.encodeproject.org/files/ENCFF060CBP/@@download/ENCFF060CBP.bam released s3://encode-public/2020/07/19/4d4ad73a-ba76-4683-98d7-7bd999ae2163/ENCFF060CBP.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF094IDX bam bam alignments GRCh38 ENCSR247FUH Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF039GUB/, /files/ENCFF110MCL/, /files/ENCFF777KGX/, /files/ENCFF946IKE/, /files/ENCFF371ZWV/ 2558789291 ENCODE Processing Pipeline f869f0bb4591074d2df5a063ad305089 https://www.encodeproject.org/files/ENCFF094IDX/@@download/ENCFF094IDX.bam released s3://encode-public/2020/07/19/5e4a8864-f647-42a0-b1a0-98fb37f16ab6/ENCFF094IDX.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF628RXI fastq fastq reads ENCSR314YMV Control ChIP-seq /worm-donors/ENCDO001ODU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': 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modification characterization ENCFF933VIM bam bam alignments ce10 ENCSR314YMV Control ChIP-seq /worm-donors/ENCDO001ODU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174170/'], '@type': ['Target', 'Item'], 'name': 'F10E7.11-celegans', 'label': 'F10E7.11', '@id': '/targets/F10E7.11-celegans/', 'title': 'F10E7.11 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'bdc2fd0a-49c5-49d8-95e6-3aabb1c60d13', 'status': 'released'} ce11 II 7103263 7133096 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF628RXI/ 819128497 Kevin White, UChicago a7a9bad6199ffaae53f00bb05dd6da50 https://www.encodeproject.org/files/ENCFF933VIM/@@download/ENCFF933VIM.bam released s3://encode-public/2017/10/06/55cd13ef-f738-4197-b8b6-191404545886/ENCFF933VIM.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF055OTF bam bam alignments ce11 ENCSR314YMV Control ChIP-seq /worm-donors/ENCDO001ODU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174170/'], '@type': ['Target', 'Item'], 'name': 'F10E7.11-celegans', 'label': 'F10E7.11', '@id': '/targets/F10E7.11-celegans/', 'title': 'F10E7.11 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'bdc2fd0a-49c5-49d8-95e6-3aabb1c60d13', 'status': 'released'} ce11 II 7103263 7133096 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF628RXI/ 819740311 Kevin White, UChicago f038ae59743abc1705457257701c20b4 https://www.encodeproject.org/files/ENCFF055OTF/@@download/ENCFF055OTF.bam released s3://encode-public/2017/10/06/e6da10d6-ae85-4036-bd8c-9586738ccfcd/ENCFF055OTF.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF696FLJ bigWig bigWig signal of unique reads ce10 ENCSR314YMV Control ChIP-seq /worm-donors/ENCDO001ODU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 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'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174170/'], '@type': ['Target', 'Item'], 'name': 'F10E7.11-celegans', 'label': 'F10E7.11', '@id': '/targets/F10E7.11-celegans/', 'title': 'F10E7.11 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'bdc2fd0a-49c5-49d8-95e6-3aabb1c60d13', 'status': 'released'} ce11 II 7103263 7133096 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF933VIM/ 9924298 Kevin White, UChicago 1a2a0cdbc2eb7b3185fdd5ada95d2154 https://www.encodeproject.org/files/ENCFF743OPT/@@download/ENCFF743OPT.bigWig released s3://encode-public/2017/10/09/2624b083-80a7-44d2-920f-df613f69110c/ENCFF743OPT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF299OBS bigWig bigWig read-depth normalized signal ce11 ENCSR314YMV Control ChIP-seq /worm-donors/ENCDO001ODU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174170/'], '@type': ['Target', 'Item'], 'name': 'F10E7.11-celegans', 'label': 'F10E7.11', '@id': '/targets/F10E7.11-celegans/', 'title': 'F10E7.11 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'bdc2fd0a-49c5-49d8-95e6-3aabb1c60d13', 'status': 'released'} ce11 II 7103263 7133096 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF055OTF/ 9920283 Kevin White, UChicago 3bd8609eee3eec677c69790e000310e1 https://www.encodeproject.org/files/ENCFF299OBS/@@download/ENCFF299OBS.bigWig released s3://encode-public/2017/10/09/cc83ac29-4412-48f5-b596-753c8c61a60f/ENCFF299OBS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF799KKL bigWig bigWig signal of unique reads ce11 ENCSR314YMV Control ChIP-seq /worm-donors/ENCDO001ODU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174170/'], '@type': ['Target', 'Item'], 'name': 'F10E7.11-celegans', 'label': 'F10E7.11', '@id': '/targets/F10E7.11-celegans/', 'title': 'F10E7.11 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'bdc2fd0a-49c5-49d8-95e6-3aabb1c60d13', 'status': 'released'} ce11 II 7103263 7133096 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF055OTF/ 9924446 Kevin White, UChicago 1b04dd33d523ef54ceffc4a91235864f https://www.encodeproject.org/files/ENCFF799KKL/@@download/ENCFF799KKL.bigWig released s3://encode-public/2017/10/09/c3938522-cd17-47e8-aff7-708df5c3a998/ENCFF799KKL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF280YFB fastq fastq reads ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 single-ended 2490806238 Bradley Bernstein, Broad d67e37b8d39c16ff672fc9d6317464b2 SRA:SRR5331272 https://www.encodeproject.org/files/ENCFF280YFB/@@download/ENCFF280YFB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/12/5d98192e-e9a2-4345-ae67-5018841e95e3/ENCFF280YFB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF253BJA fastq fastq reads ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 single-ended 2402139045 Bradley Bernstein, Broad 465620e809228ef803c5a17ef6815603 SRA:SRR5331269 https://www.encodeproject.org/files/ENCFF253BJA/@@download/ENCFF253BJA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/12/3ceb87bd-d84a-4749-8655-d6145c935cf7/ENCFF253BJA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF600AGN fastq fastq reads ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_2 76 single-ended 2417798766 Bradley Bernstein, Broad 523cfa7cbb98bbb0f147d7fae27dbcb1 SRA:SRR5331268 https://www.encodeproject.org/files/ENCFF600AGN/@@download/ENCFF600AGN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/29/a6dd4bca-867f-4d7c-b46b-cf47ac029284/ENCFF600AGN.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF207NLW fastq fastq reads ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 single-ended 936256331 Bradley Bernstein, Broad 464b12b0a2c8cf2620164fcbf5531fa2 SRA:SRR5331270 https://www.encodeproject.org/files/ENCFF207NLW/@@download/ENCFF207NLW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/eb6543d5-f015-48d1-a659-2f10e09ef48d/ENCFF207NLW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF549ALF fastq fastq reads ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 single-ended 894750171 Bradley Bernstein, Broad 3e0046a14c72fad8494e73b40751ac31 SRA:SRR5331271 https://www.encodeproject.org/files/ENCFF549ALF/@@download/ENCFF549ALF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/4464bb57-910b-4325-8b31-a24b24cbbe3e/ENCFF549ALF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF245VQD bam bam unfiltered alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF600AGN/, /files/ENCFF280YFB/ 5335810734 ENCODE Processing Pipeline 87075126a8f255a9839c0bd164e67817 https://www.encodeproject.org/files/ENCFF245VQD/@@download/ENCFF245VQD.bam released s3://encode-public/2016/10/12/93155275-c01b-4614-ad9b-6f6f4c0e7508/ENCFF245VQD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF255EJV bam bam unfiltered alignments hg19 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF253BJA/, /files/ENCFF807MUK/, /files/ENCFF549ALF/, /files/ENCFF207NLW/ 4232987190 ENCODE Processing Pipeline c15c47eb7b2ba6a8fefd66016b25e250 https://www.encodeproject.org/files/ENCFF255EJV/@@download/ENCFF255EJV.bam released s3://encode-public/2016/10/12/2d3c36ca-b168-48db-a063-fe6bb7e7f232/ENCFF255EJV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF749MDM bam bam unfiltered alignments hg19 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF600AGN/, /files/ENCFF280YFB/ 5325942798 ENCODE Processing Pipeline eac8b70a08845cf5d72a4b7b36b083dd https://www.encodeproject.org/files/ENCFF749MDM/@@download/ENCFF749MDM.bam released s3://encode-public/2016/10/12/3dda0219-c894-4a5f-a67d-0d35131ee6c2/ENCFF749MDM.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF562PFJ bam bam unfiltered alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF253BJA/, /files/ENCFF643CGH/, /files/ENCFF549ALF/, /files/ENCFF207NLW/ 4242656017 ENCODE Processing Pipeline 7364dfb55355d59fbf4cb6994a1f8599 https://www.encodeproject.org/files/ENCFF562PFJ/@@download/ENCFF562PFJ.bam released s3://encode-public/2016/10/12/6fcf6448-64d1-48f2-8f2f-141822b73de2/ENCFF562PFJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF831TJC bam bam alignments hg19 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF253BJA/, /files/ENCFF807MUK/, /files/ENCFF549ALF/, /files/ENCFF207NLW/ 3060155318 ENCODE Processing Pipeline a53880c4d6b50a6ddf9a85c3e65daf20 https://www.encodeproject.org/files/ENCFF831TJC/@@download/ENCFF831TJC.bam released s3://encode-public/2016/10/12/33e82bf5-f3c7-4c8a-be3c-e1467b327e8c/ENCFF831TJC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF248XON bam bam alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF600AGN/, /files/ENCFF280YFB/ 4244218272 ENCODE Processing Pipeline adc87817837b14a05606e38dadae95d0 https://www.encodeproject.org/files/ENCFF248XON/@@download/ENCFF248XON.bam released s3://encode-public/2016/10/12/694a3870-63a3-48b5-a617-2effe31da9e8/ENCFF248XON.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF882WXC bam bam alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF253BJA/, /files/ENCFF643CGH/, /files/ENCFF549ALF/, /files/ENCFF207NLW/ 3062917666 ENCODE Processing Pipeline 33970a9eb4606dfa75917221c25afab1 https://www.encodeproject.org/files/ENCFF882WXC/@@download/ENCFF882WXC.bam released s3://encode-public/2016/10/12/97a33b03-eb4e-4abf-a3d5-2743da976051/ENCFF882WXC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF812MYK bam bam alignments hg19 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF600AGN/, /files/ENCFF280YFB/ 4240011624 ENCODE Processing Pipeline 6b6e24063789a07b93b3b3540050d0d4 https://www.encodeproject.org/files/ENCFF812MYK/@@download/ENCFF812MYK.bam released s3://encode-public/2016/10/12/cd88b21c-be16-49e9-985c-5895b6640201/ENCFF812MYK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF080VFL bam bam unfiltered alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF600AGN/, /files/ENCFF280YFB/, /files/ENCFF110MCL/ 5428072073 ENCODE Processing Pipeline 3653d32052dcaec684fac455f060b784 https://www.encodeproject.org/files/ENCFF080VFL/@@download/ENCFF080VFL.bam released s3://encode-public/2020/08/20/491f411c-5cbd-439f-9afb-780ce2b17bed/ENCFF080VFL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF403BHU bam bam unfiltered alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF253BJA/, /files/ENCFF549ALF/, /files/ENCFF207NLW/, /files/ENCFF110MCL/ 4304431858 ENCODE Processing Pipeline 0113c7d723bbb096496653e04152835d https://www.encodeproject.org/files/ENCFF403BHU/@@download/ENCFF403BHU.bam released s3://encode-public/2020/08/20/28292def-e610-40b8-98d6-101c5bf84cba/ENCFF403BHU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF437SWS bam bam alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF600AGN/, /files/ENCFF280YFB/, /files/ENCFF110MCL/ 4338261739 ENCODE Processing Pipeline 5dce42c77ef01ca56fc48331cc269db9 https://www.encodeproject.org/files/ENCFF437SWS/@@download/ENCFF437SWS.bam released s3://encode-public/2020/08/20/fc73876c-e329-42ac-a4ee-c7db3d776cbe/ENCFF437SWS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF506NTU bam bam alignments GRCh38 ENCSR107PGG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF253BJA/, /files/ENCFF549ALF/, /files/ENCFF207NLW/, /files/ENCFF110MCL/ 3129127760 ENCODE Processing Pipeline 0be11ed719c8b057849fce9293a31526 https://www.encodeproject.org/files/ENCFF506NTU/@@download/ENCFF506NTU.bam released s3://encode-public/2020/08/20/1db84de6-ae7d-4af4-b745-62bc632a7ef7/ENCFF506NTU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF061PAW fastq fastq reads ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_2 36 single-ended 2269814168 Bradley Bernstein, Broad 8ef8267a300d0e8d6ca3b2529af782c6 SRA:SRR5331414 https://www.encodeproject.org/files/ENCFF061PAW/@@download/ENCFF061PAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF885SBP/ released s3://encode-public/2015/08/25/fcf58172-ebe4-49d5-be72-f9b6519dd019/ENCFF061PAW.fastq.gz mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF885SBP fastq fastq reads ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 36 single-ended 2467706256 Bradley Bernstein, Broad 586e04f86ecb5c61f321938d72b4a08d SRA:SRR5331415 https://www.encodeproject.org/files/ENCFF885SBP/@@download/ENCFF885SBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF061PAW/ released s3://encode-public/2015/08/25/266f5a4e-e127-450d-819f-514dd5df5ea1/ENCFF885SBP.fastq.gz mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF522HGS bam bam alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF398JCG/ 1295221061 ENCODE Processing Pipeline f64f82803b65b65b471038e27bcd338f https://www.encodeproject.org/files/ENCFF522HGS/@@download/ENCFF522HGS.bam released s3://encode-public/2020/09/17/bcdb1a66-9cdd-4de5-8038-286407c25518/ENCFF522HGS.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF853HFC fastq fastq reads ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 paired-ended 2 /files/ENCFF398JCG/ 2332168273 Bradley Bernstein, Broad 756c659d1983ce652a2e31a34a6cbb94 SRA:SRR5331413 https://www.encodeproject.org/files/ENCFF853HFC/@@download/ENCFF853HFC.fastq.gz Illumina HiSeq 2500 /files/ENCFF398JCG/ released s3://encode-public/2015/12/11/f934c806-2ce5-497d-bdb9-e39031358773/ENCFF853HFC.fastq.gz mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF398JCG fastq fastq reads ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF853HFC/ 2310987767 Bradley Bernstein, Broad fb2043eceb7e00ed53a5aa9281a7f2f0 SRA:SRR5331413 https://www.encodeproject.org/files/ENCFF398JCG/@@download/ENCFF398JCG.fastq.gz Illumina HiSeq 2500 /files/ENCFF853HFC/ released s3://encode-public/2016/01/20/3beda951-3ab5-4e5c-9d4b-aa1f3e1124b0/ENCFF398JCG.fastq.gz mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF567KKK bam bam alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 36 /files/ENCFF853HFC/, /files/ENCFF643CGH/ 1177283143 ENCODE Processing Pipeline 72595be1b5dbb7681dd34a78841cc797 https://www.encodeproject.org/files/ENCFF567KKK/@@download/ENCFF567KKK.bam released s3://encode-public/2016/08/09/bf3a1e25-0793-4a27-93b5-fd3f5634e6e1/ENCFF567KKK.bam ENCODE3 GRCh38 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF102QXA bam bam unfiltered alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 36 /files/ENCFF853HFC/, /files/ENCFF643CGH/ 1721365118 ENCODE Processing Pipeline 1ae8bf1212dfa4e5d19b6b8f030ee72b https://www.encodeproject.org/files/ENCFF102QXA/@@download/ENCFF102QXA.bam released s3://encode-public/2016/08/09/d8742a5a-93f2-41f0-ba0e-b394d8811942/ENCFF102QXA.bam ENCODE3 GRCh38 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF398KGQ bam bam unfiltered alignments hg19 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF885SBP/, /files/ENCFF061PAW/ 5780539757 ENCODE Processing Pipeline cf33721ac8fb166768cfb74b287d17a3 https://www.encodeproject.org/files/ENCFF398KGQ/@@download/ENCFF398KGQ.bam released s3://encode-public/2016/10/19/0c10ef5a-5b70-4daa-9ac1-44d7e515c665/ENCFF398KGQ.bam ENCODE3 hg19 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF042EJM bam bam alignments hg19 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF885SBP/, /files/ENCFF061PAW/ 3230310140 ENCODE Processing Pipeline f3ad1e614b54f131c19cd9951cf4b7c9 https://www.encodeproject.org/files/ENCFF042EJM/@@download/ENCFF042EJM.bam released s3://encode-public/2016/10/19/ceb24d25-c99f-4f3f-9812-667f2c5b38ab/ENCFF042EJM.bam ENCODE3 hg19 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF705RUU bam bam alignments hg19 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 36 /files/ENCFF853HFC/, /files/ENCFF807MUK/ 1177705266 ENCODE Processing Pipeline 73ea8b3a55ac9e7de78023c435c53c17 https://www.encodeproject.org/files/ENCFF705RUU/@@download/ENCFF705RUU.bam released s3://encode-public/2016/10/25/fb8968a1-38b8-47b4-9c37-b54dcdff8ba7/ENCFF705RUU.bam ENCODE3 hg19 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF811LIW bam bam unfiltered alignments hg19 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 36 /files/ENCFF853HFC/, /files/ENCFF807MUK/ 1713050812 ENCODE Processing Pipeline 24077bd2e233e3cdcb67b0e816698b97 https://www.encodeproject.org/files/ENCFF811LIW/@@download/ENCFF811LIW.bam released s3://encode-public/2016/10/25/298a2bcc-f69e-4691-a49b-e8652d60e4bb/ENCFF811LIW.bam ENCODE3 hg19 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF170UTG bam bam alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF885SBP/, /files/ENCFF061PAW/ 3229811801 ENCODE Processing Pipeline db78d73a9bbafd34d2d4a30d2bc9c3c1 https://www.encodeproject.org/files/ENCFF170UTG/@@download/ENCFF170UTG.bam released s3://encode-public/2017/01/11/6b79b4bf-6583-4e54-af72-50ca6ccc2ffc/ENCFF170UTG.bam ENCODE3 GRCh38 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF487JOS bam bam unfiltered alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF885SBP/, /files/ENCFF061PAW/ 5817140823 ENCODE Processing Pipeline d5efc4b68435bce3f5ab3286bf3ad150 https://www.encodeproject.org/files/ENCFF487JOS/@@download/ENCFF487JOS.bam released s3://encode-public/2017/01/11/fd179a21-c3f1-4fe7-8b47-438790bc68e9/ENCFF487JOS.bam ENCODE3 GRCh38 archived mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF425EYY bam bam alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF061PAW/, /files/ENCFF885SBP/, /files/ENCFF110MCL/ 3490847823 ENCODE Processing Pipeline b59c9ed5f42b111afa4ab07b404add96 https://www.encodeproject.org/files/ENCFF425EYY/@@download/ENCFF425EYY.bam released s3://encode-public/2020/09/17/b2f5886c-fed3-4ee7-a476-101eb88680ed/ENCFF425EYY.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF154JRP bam bam unfiltered alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF398JCG/ 1675651724 ENCODE Processing Pipeline 95dc0d959489eda9a26edaace8ddcdf0 https://www.encodeproject.org/files/ENCFF154JRP/@@download/ENCFF154JRP.bam released s3://encode-public/2020/09/17/367f5d89-0318-4152-bad8-461933148645/ENCFF154JRP.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF070ZYY bam bam unfiltered alignments GRCh38 ENCSR196CXJ Control ChIP-seq /human-donors/ENCDO027VXA/ EFO:0002106 A673 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF061PAW/, /files/ENCFF885SBP/, /files/ENCFF110MCL/ 5665830127 ENCODE Processing Pipeline a23c71dfcfa55b9e09bbc3caa81c03ac https://www.encodeproject.org/files/ENCFF070ZYY/@@download/ENCFF070ZYY.bam released s3://encode-public/2020/09/17/8b2223b9-ef70-43e8-b0c0-17fadce402b4/ENCFF070ZYY.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF458ZVK fastq fastq reads ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF715LSR/ 2340651105 Michael Snyder, Stanford f53f2fe19a3680b186dfeeea6648c614 SRA:SRR8660143 https://www.encodeproject.org/files/ENCFF458ZVK/@@download/ENCFF458ZVK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/ceca4400-7054-4de8-b9ba-86f233702d6a/ENCFF458ZVK.fastq.gz mild to moderate bottlenecking ENCFF715LSR fastq fastq reads ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF458ZVK/ 2737682884 Michael Snyder, Stanford bc5bf877ee0804081ca75240debcf7be SRA:SRR8660143 https://www.encodeproject.org/files/ENCFF715LSR/@@download/ENCFF715LSR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/9e7715d3-4061-4e3c-9262-ffe000798065/ENCFF715LSR.fastq.gz mild to moderate bottlenecking ENCFF405GGZ bam bam unfiltered alignments GRCh38 ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF458ZVK/, /files/ENCFF643CGH/, /files/ENCFF715LSR/ 5053867713 ENCODE Processing Pipeline 4488302903817224212a918a72311de2 https://www.encodeproject.org/files/ENCFF405GGZ/@@download/ENCFF405GGZ.bam released s3://encode-public/2016/11/02/dbf43633-9fc5-4a11-8093-28451e642c07/ENCFF405GGZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF659DUU bam bam unfiltered alignments hg19 ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF458ZVK/, /files/ENCFF807MUK/, /files/ENCFF715LSR/ 5042326280 ENCODE Processing Pipeline fc40ca9f01569f52af3323b363aa2c20 https://www.encodeproject.org/files/ENCFF659DUU/@@download/ENCFF659DUU.bam released s3://encode-public/2016/11/02/be6661b6-9293-46b6-9a47-9b29d5ab4b91/ENCFF659DUU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF363ATE bam bam alignments hg19 ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF458ZVK/, /files/ENCFF807MUK/, /files/ENCFF715LSR/ 4005613496 ENCODE Processing Pipeline c7c8c470318b1a7c28ecaa1ac63795c7 https://www.encodeproject.org/files/ENCFF363ATE/@@download/ENCFF363ATE.bam released s3://encode-public/2016/11/02/cbf7f25b-c6c7-4153-8b76-583e0ef8db39/ENCFF363ATE.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF780BYU bam bam alignments GRCh38 ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF458ZVK/, /files/ENCFF643CGH/, /files/ENCFF715LSR/ 4012057259 ENCODE Processing Pipeline 2c4fed3a916b5e9a76b564b19e1c0df8 https://www.encodeproject.org/files/ENCFF780BYU/@@download/ENCFF780BYU.bam released s3://encode-public/2016/11/02/817be61e-c27f-44ee-a311-f58db0a9c593/ENCFF780BYU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF725JDF bam bam unfiltered alignments GRCh38 ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF458ZVK/, /files/ENCFF715LSR/ 5045021263 ENCODE Processing Pipeline 2ee83a51314cb33da2b42453ef8cf1d3 https://www.encodeproject.org/files/ENCFF725JDF/@@download/ENCFF725JDF.bam released s3://encode-public/2020/06/02/880d8729-7923-4e1b-83c4-3fc5e7deca83/ENCFF725JDF.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF750FIC bam bam alignments GRCh38 ENCSR740VAI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF458ZVK/, /files/ENCFF715LSR/ 3955435659 ENCODE Processing Pipeline 2bb1c2f6586759abe11cfdb82d79ff9a https://www.encodeproject.org/files/ENCFF750FIC/@@download/ENCFF750FIC.bam released s3://encode-public/2020/06/02/05de8b62-f339-4978-88d3-0a9c01201746/ENCFF750FIC.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF337ZWU fastq fastq reads ENCSR465UAX Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 801162717 Bradley Bernstein, Broad d95d480d07a09f1d3f766ac56918e7de SRA:SRR13804712 https://www.encodeproject.org/files/ENCFF337ZWU/@@download/ENCFF337ZWU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/2aaa5f60-1be8-4b03-bd37-59a4495cdbdd/ENCFF337ZWU.fastq.gz mild to moderate bottlenecking ENCFF835NVR fastq fastq reads ENCSR465UAX Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 825666332 Bradley Bernstein, Broad 9f92142a5ed030ae8d34c4fd1095acd2 SRA:SRR13804713 https://www.encodeproject.org/files/ENCFF835NVR/@@download/ENCFF835NVR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/c731402b-5a94-4b7e-8fe2-f70c088aad8c/ENCFF835NVR.fastq.gz mild to moderate bottlenecking ENCFF409XGZ fastq fastq reads ENCSR465UAX Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1058777114 Bradley Bernstein, Broad 06198aea9cfcb96577e575ba68416175 SRA:SRR13804714 https://www.encodeproject.org/files/ENCFF409XGZ/@@download/ENCFF409XGZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/e3010280-edc1-4d26-9ce9-38eb8d5241c4/ENCFF409XGZ.fastq.gz mild to moderate bottlenecking ENCFF348OIG fastq fastq reads ENCSR465UAX Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1037155138 Bradley Bernstein, Broad c6f2fe353b04de8aa30e0c3359cc5999 SRA:SRR13804715 https://www.encodeproject.org/files/ENCFF348OIG/@@download/ENCFF348OIG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/0446f653-8bb4-4e6f-a5fa-0685e556a830/ENCFF348OIG.fastq.gz mild to moderate bottlenecking ENCFF843HEZ bam bam alignments GRCh38 ENCSR465UAX Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF348OIG/, /files/ENCFF835NVR/, /files/ENCFF337ZWU/, /files/ENCFF409XGZ/, /files/ENCFF110MCL/ 2735974099 ENCODE Processing Pipeline e488f0598d005bf3c692f03509a8d56a https://www.encodeproject.org/files/ENCFF843HEZ/@@download/ENCFF843HEZ.bam released s3://encode-public/2020/07/19/a8713594-15fa-4d18-a65b-2a68678458bd/ENCFF843HEZ.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF482JCT bam bam unfiltered alignments GRCh38 ENCSR465UAX Control ChIP-seq /human-donors/ENCDO739SDJ/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF348OIG/, /files/ENCFF835NVR/, /files/ENCFF337ZWU/, /files/ENCFF409XGZ/, /files/ENCFF110MCL/ 3532006382 ENCODE Processing Pipeline 70d6424309489d20694c1afaa3a11f67 https://www.encodeproject.org/files/ENCFF482JCT/@@download/ENCFF482JCT.bam released s3://encode-public/2020/07/19/7a4697d3-6827-4d39-9bd4-69c0bd67a916/ENCFF482JCT.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF361MWZ fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 4 4_1 33 single-ended 122413962 Kevin White, UChicago b101048f40b01ff32ff77cce66cbd6b7 https://www.encodeproject.org/files/ENCFF361MWZ/@@download/ENCFF361MWZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/9db68c4d-4ca3-45c4-9cfb-631edec6a3ed/ENCFF361MWZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF731EDY fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 83057501 Kevin White, UChicago 5ba2e9d9d8316b57c09b693fcb2aee41 https://www.encodeproject.org/files/ENCFF731EDY/@@download/ENCFF731EDY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/2bbf9a90-7471-4370-8d5d-ec94488eb186/ENCFF731EDY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF720PKE fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 3 3_1 33 single-ended 89579242 Kevin White, UChicago b09dbecc3adfa54b7deb9ba59a3298ea https://www.encodeproject.org/files/ENCFF720PKE/@@download/ENCFF720PKE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/30153939-8836-41cd-8312-93acc9f2c254/ENCFF720PKE.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF302YYH fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 120030979 Kevin White, UChicago 44d5adcaaa2d75ae1aa39b17634e6a1e https://www.encodeproject.org/files/ENCFF302YYH/@@download/ENCFF302YYH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/b98815de-d81f-4749-9212-830ac7550fb7/ENCFF302YYH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF354OLU fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 3 3_1 33 single-ended 58065286 Kevin White, UChicago 49baaadf4941809a2510c592e70c31c6 https://www.encodeproject.org/files/ENCFF354OLU/@@download/ENCFF354OLU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/32cb1794-ff49-4ed9-b735-b9b6771e4776/ENCFF354OLU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF365ROG fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 4 4_1 33 single-ended 129111397 Kevin White, UChicago 194c1fa7c976cf3138e06242bdd9b6a5 https://www.encodeproject.org/files/ENCFF365ROG/@@download/ENCFF365ROG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/8189e939-ee62-4062-aef9-4f4ae43ddf30/ENCFF365ROG.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF198FKR fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 122561623 Kevin White, UChicago 47f3a2849c25409cc31a26485bab998e https://www.encodeproject.org/files/ENCFF198FKR/@@download/ENCFF198FKR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/b589e044-5625-488a-b94b-dc7ba540e59d/ENCFF198FKR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF068WLX fastq fastq reads ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 53283314 Kevin White, UChicago 97db4deeadc0221ca1c79703ea018dbd https://www.encodeproject.org/files/ENCFF068WLX/@@download/ENCFF068WLX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/1539e98d-2732-4790-9fb0-63d96c041ba9/ENCFF068WLX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF354FQW bam bam alignments ce10 ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 32 /files/ENCFF987UMF/, /files/ENCFF198FKR/, /files/ENCFF302YYH/, /files/ENCFF068WLX/, /files/ENCFF731EDY/, /files/ENCFF354OLU/, /files/ENCFF720PKE/, /files/ENCFF361MWZ/, /files/ENCFF365ROG/ 857051099 Kevin White, UChicago b285f5934a368ebf3488d216cfe30060 https://www.encodeproject.org/files/ENCFF354FQW/@@download/ENCFF354FQW.bam released s3://encode-public/2017/10/30/9ed28207-f3ae-4229-a97a-9160a847bbcb/ENCFF354FQW.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF801QBX bam bam alignments ce11 ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 32 /files/ENCFF586MOL/, /files/ENCFF198FKR/, /files/ENCFF302YYH/, /files/ENCFF068WLX/, /files/ENCFF731EDY/, /files/ENCFF354OLU/, /files/ENCFF720PKE/, /files/ENCFF361MWZ/, /files/ENCFF365ROG/ 857721836 Kevin White, UChicago 64726463cf35ab4ee9b65a69b9f61f57 https://www.encodeproject.org/files/ENCFF801QBX/@@download/ENCFF801QBX.bam released s3://encode-public/2017/10/30/7031ab2f-5ab9-4216-8fea-109e2466b59b/ENCFF801QBX.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF964WUG bigWig bigWig read-depth normalized signal ce10 ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF354FQW/ 9952802 Kevin White, UChicago 4f6a65bf9be5184182079ab14aeba9f9 https://www.encodeproject.org/files/ENCFF964WUG/@@download/ENCFF964WUG.bigWig released s3://encode-public/2017/10/31/251d755c-f62a-44e1-891c-54f6c9b47f31/ENCFF964WUG.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF334MKV bigWig bigWig signal of unique reads ce10 ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF354FQW/ 10005078 Kevin White, UChicago 914ba49f2420db71c010bc2748d01313 https://www.encodeproject.org/files/ENCFF334MKV/@@download/ENCFF334MKV.bigWig released s3://encode-public/2017/10/31/233e5f59-31db-4915-b1fb-5cd3dc9b2210/ENCFF334MKV.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF260EKO bigWig bigWig read-depth normalized signal ce11 ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF801QBX/ 9947651 Kevin White, UChicago a8706b8a6787479e198dbe39a9202e90 https://www.encodeproject.org/files/ENCFF260EKO/@@download/ENCFF260EKO.bigWig released s3://encode-public/2017/10/31/97039a88-eef1-42a3-bd01-b0ab5a7ff8bf/ENCFF260EKO.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF925ERL bigWig bigWig signal of unique reads ce11 ENCSR949QYZ Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF801QBX/ 10001745 Kevin White, UChicago d5cd64c8153b2af5b07f2cce9c92e181 https://www.encodeproject.org/files/ENCFF925ERL/@@download/ENCFF925ERL.bigWig released s3://encode-public/2017/10/31/1d991624-7503-4155-a421-50ce15b6f964/ENCFF925ERL.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF073XJH fastq fastq reads ENCSR360NJD Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 779309592 Bradley Bernstein, Broad adf64797bc1a2bc83fa84332e1e2c023 SRA:SRR13804056 https://www.encodeproject.org/files/ENCFF073XJH/@@download/ENCFF073XJH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/f04e9803-9129-4ef7-b265-02551035405c/ENCFF073XJH.fastq.gz mild to moderate bottlenecking ENCFF491GZP fastq fastq reads ENCSR360NJD Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1093162955 Bradley Bernstein, Broad fae0b72466233bd3bda0793fe0fa3d8e SRA:SRR13804057 https://www.encodeproject.org/files/ENCFF491GZP/@@download/ENCFF491GZP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/47989f21-ecc1-4c7e-a474-9bc2068de60a/ENCFF491GZP.fastq.gz mild to moderate bottlenecking ENCFF920HJB fastq fastq reads ENCSR360NJD Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 756589962 Bradley Bernstein, Broad fe353a72e65b899466780a45a5989ef0 SRA:SRR13804058 https://www.encodeproject.org/files/ENCFF920HJB/@@download/ENCFF920HJB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/eb2f6609-6a40-4bfa-8858-35fc40e1783b/ENCFF920HJB.fastq.gz mild to moderate bottlenecking ENCFF460ZIC fastq fastq reads ENCSR360NJD Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1070960664 Bradley Bernstein, Broad eb1535069428121409cfa31486dbda52 SRA:SRR13804059 https://www.encodeproject.org/files/ENCFF460ZIC/@@download/ENCFF460ZIC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/f75eb3b7-836f-4397-9a1d-11030a58ca49/ENCFF460ZIC.fastq.gz mild to moderate bottlenecking ENCFF310RJF bam bam unfiltered alignments GRCh38 ENCSR360NJD Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF491GZP/, /files/ENCFF073XJH/, /files/ENCFF920HJB/, /files/ENCFF460ZIC/, /files/ENCFF110MCL/ 3522064108 ENCODE Processing Pipeline e1ee6a85258520014494c76873af596b https://www.encodeproject.org/files/ENCFF310RJF/@@download/ENCFF310RJF.bam released s3://encode-public/2020/07/19/67ea44e9-92e1-4978-a6e5-05828f60f8aa/ENCFF310RJF.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF539TSK bam bam alignments GRCh38 ENCSR360NJD Control ChIP-seq /human-donors/ENCDO054KII/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF491GZP/, /files/ENCFF073XJH/, /files/ENCFF920HJB/, /files/ENCFF460ZIC/, /files/ENCFF110MCL/ 2754822152 ENCODE Processing Pipeline 48584b9233a228f153686f51b61331a3 https://www.encodeproject.org/files/ENCFF539TSK/@@download/ENCFF539TSK.bam released s3://encode-public/2020/07/19/47f1a6c2-d8b3-4094-8271-87621b36ad8f/ENCFF539TSK.bam ENCODE4 v1.5.0 GRCh38 released mild to moderate bottlenecking ENCFF696OLX fastq fastq reads ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 paired-ended 1 /files/ENCFF825GYY/ 2997242333 Michael Snyder, Stanford 4edbfffe91acb5e27dbdd25699dd81e9 SRA:SRR5112072 https://www.encodeproject.org/files/ENCFF696OLX/@@download/ENCFF696OLX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/422f2504-4185-41bf-9c81-a42dc58393cc/ENCFF696OLX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF825GYY fastq fastq reads ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 paired-ended 2 /files/ENCFF696OLX/ 3048408933 Michael Snyder, Stanford b7bd232e2a0ca193cee56450ac53de06 SRA:SRR5112072 https://www.encodeproject.org/files/ENCFF825GYY/@@download/ENCFF825GYY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/8613d342-efe6-4e23-a2de-94b1a7905677/ENCFF825GYY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF026SZZ bam bam unfiltered alignments hg19 ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 /files/ENCFF696OLX/, /files/ENCFF807MUK/, /files/ENCFF825GYY/ 5973596207 ENCODE Processing Pipeline c8149714d9dee8de247ceb56e0875eba https://www.encodeproject.org/files/ENCFF026SZZ/@@download/ENCFF026SZZ.bam released s3://encode-public/2016/09/11/decc6927-c629-40f9-b9e2-0177c7dc2d47/ENCFF026SZZ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF609RUH bam bam alignments hg19 ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 /files/ENCFF696OLX/, /files/ENCFF807MUK/, /files/ENCFF825GYY/ 5025484195 ENCODE Processing Pipeline a08eabc5d152090456442758688789e1 https://www.encodeproject.org/files/ENCFF609RUH/@@download/ENCFF609RUH.bam released s3://encode-public/2016/09/11/87660aa6-2bc7-4344-9918-221241f41945/ENCFF609RUH.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF747VRU bam bam unfiltered alignments GRCh38 ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 /files/ENCFF696OLX/, /files/ENCFF643CGH/, /files/ENCFF825GYY/ 5979296780 ENCODE Processing Pipeline eb34e963906154a0916e364433dfd3e9 https://www.encodeproject.org/files/ENCFF747VRU/@@download/ENCFF747VRU.bam released s3://encode-public/2016/09/11/f69ffd86-572d-4108-bbf0-99e102dced63/ENCFF747VRU.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF035DJR bam bam alignments GRCh38 ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 /files/ENCFF696OLX/, /files/ENCFF643CGH/, /files/ENCFF825GYY/ 5025763725 ENCODE Processing Pipeline 15e46063d98ff28073966399dbc1d780 https://www.encodeproject.org/files/ENCFF035DJR/@@download/ENCFF035DJR.bam released s3://encode-public/2016/09/11/b5fdd8e8-7c6a-4c7d-ad10-2cda83e89bbf/ENCFF035DJR.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF056THE bam bam unfiltered alignments GRCh38 ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 /files/ENCFF110MCL/, /files/ENCFF696OLX/, /files/ENCFF825GYY/ 6057232310 ENCODE Processing Pipeline 5f9dd675763d4de1f13bf852cea00195 https://www.encodeproject.org/files/ENCFF056THE/@@download/ENCFF056THE.bam released s3://encode-public/2020/06/02/81396349-3b2b-4907-a3ba-8249aa44b27b/ENCFF056THE.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF785BTW bam bam alignments GRCh38 ENCSR782QKO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_3 101 /files/ENCFF110MCL/, /files/ENCFF696OLX/, /files/ENCFF825GYY/ 5033381618 ENCODE Processing Pipeline 24121075fa7629a1c0398d8c4d85e27b https://www.encodeproject.org/files/ENCFF785BTW/@@download/ENCFF785BTW.bam released s3://encode-public/2020/06/02/c2601a13-f4bc-4455-8081-6f3e2ec867e2/ENCFF785BTW.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF371DTI fastq fastq reads ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 86045516 Michael Snyder, Stanford de49c91b3bbc29f5d96e08658a813377 https://www.encodeproject.org/files/ENCFF371DTI/@@download/ENCFF371DTI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/96509de6-26b6-49ab-90c4-2c6a668cf189/ENCFF371DTI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF404SVC fastq fastq reads ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 59548885 Michael Snyder, Stanford 7d08fff24230247592e86349b093408b https://www.encodeproject.org/files/ENCFF404SVC/@@download/ENCFF404SVC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/075d9c5a-0738-4210-812a-d3c4216c7ad5/ENCFF404SVC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF318WMH bam bam alignments ce10 ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF371DTI/, /files/ENCFF404SVC/, /files/ENCFF987UMF/ 191004102 Kevin White, UChicago e1d68b0b21eb577ca888f5cb2beb1abc https://www.encodeproject.org/files/ENCFF318WMH/@@download/ENCFF318WMH.bam released s3://encode-public/2016/10/18/a47b4455-2948-4cb6-9d93-cad81eb85957/ENCFF318WMH.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF059YVG bam bam alignments ce11 ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF371DTI/, /files/ENCFF404SVC/, /files/ENCFF586MOL/ 191209924 Kevin White, UChicago 559c098946d312f511f58971da8fa3a5 https://www.encodeproject.org/files/ENCFF059YVG/@@download/ENCFF059YVG.bam released s3://encode-public/2016/10/19/72cf5221-cd77-4e0b-b7fd-81e74fc44515/ENCFF059YVG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF047XLU bigWig bigWig read-depth normalized signal ce10 ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF318WMH/ 9995639 Kevin White, UChicago e1cbceab2ebedc374c98b770f7254914 https://www.encodeproject.org/files/ENCFF047XLU/@@download/ENCFF047XLU.bigWig released s3://encode-public/2016/10/20/37449700-2def-4396-b3b7-f12df45e5295/ENCFF047XLU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF844FTJ bigWig bigWig signal of unique reads ce10 ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF318WMH/ 9998786 Kevin White, UChicago a0335a021a820ec78b1ddd0d12cbaa23 https://www.encodeproject.org/files/ENCFF844FTJ/@@download/ENCFF844FTJ.bigWig released s3://encode-public/2016/10/20/4639bfa2-c04c-43a0-b592-9bc195d2be90/ENCFF844FTJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF167HFS bigWig bigWig read-depth normalized signal ce11 ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF059YVG/ 9993405 Kevin White, UChicago c966f51d67d41ff89b68f4a012a54d72 https://www.encodeproject.org/files/ENCFF167HFS/@@download/ENCFF167HFS.bigWig released s3://encode-public/2016/10/21/00abe4d5-ca29-4f38-b826-52626d999ce8/ENCFF167HFS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF948UWN bigWig bigWig signal of unique reads ce11 ENCSR589YYN Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF059YVG/ 9995551 Kevin White, UChicago f094437d61c5547fff654a89e401fbde https://www.encodeproject.org/files/ENCFF948UWN/@@download/ENCFF948UWN.bigWig released s3://encode-public/2016/10/21/aa9010ad-35fe-4b33-9d11-5d2fc9e8ee65/ENCFF948UWN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF065VOB fastq fastq reads ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF795HIW/ 4366279054 Michael Snyder, Stanford d6b1817f8545ef1c8be33d0582ab1e7c SRA:SRR6213541 https://www.encodeproject.org/files/ENCFF065VOB/@@download/ENCFF065VOB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/24/db96f3e0-b0d2-41b4-8539-28c4d1481fd6/ENCFF065VOB.fastq.gz ENCFF795HIW fastq fastq reads ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF065VOB/ 5011739165 Michael Snyder, Stanford 6e4a4c9d9d180e559d31e82ff6a223fe SRA:SRR6213541 https://www.encodeproject.org/files/ENCFF795HIW/@@download/ENCFF795HIW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/24/e677d4a9-88e2-44bb-a8f2-3238dd13c412/ENCFF795HIW.fastq.gz ENCFF692MYF bam bam unfiltered alignments GRCh38 ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF795HIW/, /files/ENCFF643CGH/, /files/ENCFF065VOB/ 9114277716 ENCODE Processing Pipeline 7b989122de564be4b66a95c0a96a3701 https://www.encodeproject.org/files/ENCFF692MYF/@@download/ENCFF692MYF.bam released s3://encode-public/2016/05/06/29a368a4-312d-46dc-86bb-a8c2ce23d913/ENCFF692MYF.bam ENCODE3 GRCh38 archived ENCFF136XMZ bam bam alignments GRCh38 ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF795HIW/, /files/ENCFF643CGH/, /files/ENCFF065VOB/ 6760538497 ENCODE Processing Pipeline ef2b9156807bc800de94bf8ce8be7a9d https://www.encodeproject.org/files/ENCFF136XMZ/@@download/ENCFF136XMZ.bam released s3://encode-public/2016/05/06/532a3a8f-3acc-40e7-9e00-14255cdd33c5/ENCFF136XMZ.bam ENCODE3 GRCh38 archived ENCFF477TZG bam bam unfiltered alignments hg19 ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF795HIW/, /files/ENCFF807MUK/, /files/ENCFF065VOB/ 9094547008 ENCODE Processing Pipeline a86e84e0dc17c8587e5bcdc42b5ec433 https://www.encodeproject.org/files/ENCFF477TZG/@@download/ENCFF477TZG.bam released s3://encode-public/2016/12/06/d2f6c304-c535-42fb-8a61-ef0b643faf4b/ENCFF477TZG.bam ENCODE3 hg19 archived ENCFF152VGP bam bam alignments hg19 ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF795HIW/, /files/ENCFF807MUK/, /files/ENCFF065VOB/ 6741754446 ENCODE Processing Pipeline 6e762f582da126cb22f7761937fed984 https://www.encodeproject.org/files/ENCFF152VGP/@@download/ENCFF152VGP.bam released s3://encode-public/2016/12/06/41d5d656-c5b9-46d5-a2c9-579a34ed4040/ENCFF152VGP.bam ENCODE3 hg19 archived ENCFF280XOV bam bam unfiltered alignments GRCh38 ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF065VOB/, /files/ENCFF795HIW/ 9119326215 ENCODE Processing Pipeline d1a315c0c7c40a61cca715322fe9e707 https://www.encodeproject.org/files/ENCFF280XOV/@@download/ENCFF280XOV.bam released s3://encode-public/2020/06/02/9d84d847-5379-4b16-bf66-8dacd3bf51f4/ENCFF280XOV.bam ENCODE4 GRCh38 released ENCFF876AVR bam bam alignments GRCh38 ENCSR366VWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF065VOB/, /files/ENCFF795HIW/ 6781892989 ENCODE Processing Pipeline cc933e9fc32d5090e52310cc699007ff https://www.encodeproject.org/files/ENCFF876AVR/@@download/ENCFF876AVR.bam released s3://encode-public/2020/06/02/8e5d5783-e39d-4397-8eeb-2b15beab6d09/ENCFF876AVR.bam ENCODE4 GRCh38 released ENCFF159MXN fastq fastq reads ENCSR000WON Control ChIP-seq /fly-donors/ENCDO793IMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41344/'], '@type': ['Target', 'Item'], 'name': 'CG4820-dmelanogaster', 'label': 'CG4820', '@id': '/targets/CG4820-dmelanogaster/', 'title': 'CG4820 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e9e7c879-1d8f-4d74-98ff-3d3ad68ba6f8', 'status': 'released'} dm3 3R 7031002 7052057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 591137844 Kevin White, UChicago 454fa674677bac8df0f4956edd81a8b8 https://www.encodeproject.org/files/ENCFF159MXN/@@download/ENCFF159MXN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/93096a66-d77d-45e7-8228-6d2d4c474857/ENCFF159MXN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF457DOT bam bam alignments dm3 ENCSR000WON Control ChIP-seq /fly-donors/ENCDO793IMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41344/'], '@type': ['Target', 'Item'], 'name': 'CG4820-dmelanogaster', 'label': 'CG4820', '@id': '/targets/CG4820-dmelanogaster/', 'title': 'CG4820 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e9e7c879-1d8f-4d74-98ff-3d3ad68ba6f8', 'status': 'released'} dm3 3R 7031002 7052057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF159MXN/ 721096446 Kevin White, UChicago dc8bd91feefa86cc562982400037e2ba https://www.encodeproject.org/files/ENCFF457DOT/@@download/ENCFF457DOT.bam released s3://encode-public/2016/04/10/2ad0b16f-eeee-4518-a088-64f4fa0ceaf3/ENCFF457DOT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF465BYH bigWig bigWig read-depth normalized signal dm3 ENCSR000WON Control ChIP-seq /fly-donors/ENCDO793IMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41344/'], '@type': ['Target', 'Item'], 'name': 'CG4820-dmelanogaster', 'label': 'CG4820', '@id': '/targets/CG4820-dmelanogaster/', 'title': 'CG4820 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e9e7c879-1d8f-4d74-98ff-3d3ad68ba6f8', 'status': 'released'} dm3 3R 7031002 7052057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF457DOT/ 15340450 Kevin White, UChicago 83693db3771e1d854f037f27e1a94e8f https://www.encodeproject.org/files/ENCFF465BYH/@@download/ENCFF465BYH.bigWig released s3://encode-public/2016/04/11/1c26c89b-9ab9-41dc-a539-2a4eb6603af0/ENCFF465BYH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF469FRZ bigWig bigWig signal of unique reads dm3 ENCSR000WON Control ChIP-seq /fly-donors/ENCDO793IMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41344/'], '@type': ['Target', 'Item'], 'name': 'CG4820-dmelanogaster', 'label': 'CG4820', '@id': '/targets/CG4820-dmelanogaster/', 'title': 'CG4820 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e9e7c879-1d8f-4d74-98ff-3d3ad68ba6f8', 'status': 'released'} dm3 3R 7031002 7052057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF457DOT/ 15288770 Kevin White, UChicago 82823e9cf778909c63fa9643e770d33e https://www.encodeproject.org/files/ENCFF469FRZ/@@download/ENCFF469FRZ.bigWig released s3://encode-public/2016/04/11/68365806-883d-4091-9aa7-597c973fc36a/ENCFF469FRZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF295SEL bam bam alignments dm6 ENCSR000WON Control ChIP-seq /fly-donors/ENCDO793IMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41344/'], '@type': ['Target', 'Item'], 'name': 'CG4820-dmelanogaster', 'label': 'CG4820', '@id': '/targets/CG4820-dmelanogaster/', 'title': 'CG4820 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e9e7c879-1d8f-4d74-98ff-3d3ad68ba6f8', 'status': 'released'} dm3 3R 7031002 7052057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF159MXN/ 716752085 Kevin White, UChicago 47370ec77855da7fc8aae3ed7d6d8caa https://www.encodeproject.org/files/ENCFF295SEL/@@download/ENCFF295SEL.bam released s3://encode-public/2016/04/21/718877a1-2e51-47dc-86a0-7a3d0fc0a627/ENCFF295SEL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF754KJF bigWig bigWig signal of unique reads dm6 ENCSR000WON Control ChIP-seq /fly-donors/ENCDO793IMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41344/'], '@type': ['Target', 'Item'], 'name': 'CG4820-dmelanogaster', 'label': 'CG4820', '@id': '/targets/CG4820-dmelanogaster/', 'title': 'CG4820 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e9e7c879-1d8f-4d74-98ff-3d3ad68ba6f8', 'status': 'released'} dm3 3R 7031002 7052057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF295SEL/ 17403107 Kevin White, UChicago db0de02e2dd358481f5947c222e2c42f https://www.encodeproject.org/files/ENCFF754KJF/@@download/ENCFF754KJF.bigWig released s3://encode-public/2016/06/21/cd65ae6a-6f94-4f4f-88fd-bcc5cd0e2583/ENCFF754KJF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF236MNH bigWig bigWig read-depth normalized signal dm6 ENCSR000WON Control ChIP-seq /fly-donors/ENCDO793IMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41344/'], '@type': ['Target', 'Item'], 'name': 'CG4820-dmelanogaster', 'label': 'CG4820', '@id': '/targets/CG4820-dmelanogaster/', 'title': 'CG4820 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e9e7c879-1d8f-4d74-98ff-3d3ad68ba6f8', 'status': 'released'} dm3 3R 7031002 7052057 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF295SEL/ 17466387 Kevin White, UChicago 2edae3d874c6149b2e574e733aec9c8f https://www.encodeproject.org/files/ENCFF236MNH/@@download/ENCFF236MNH.bigWig released s3://encode-public/2016/06/21/584b0a4b-9b34-468f-9868-902099b718e6/ENCFF236MNH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF913GBN fastq fastq reads ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 210645361 Michael Snyder, Stanford ce15980fafa85a595d9b0c0bf130d806 https://www.encodeproject.org/files/ENCFF913GBN/@@download/ENCFF913GBN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e7243e75-6963-480b-8195-e62625a6fcbd/ENCFF913GBN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF407IAM fastq fastq reads ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 204094918 Michael Snyder, Stanford 14c6534fb8e29cec565050497bb9886c https://www.encodeproject.org/files/ENCFF407IAM/@@download/ENCFF407IAM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1f83bc75-82f0-4f2e-9f07-1fe9e419da0b/ENCFF407IAM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF072MNF bam bam alignments ce10 ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF407IAM/, /files/ENCFF913GBN/, /files/ENCFF987UMF/ 272022966 Kevin White, UChicago 551f2a9f55f73ab0c4ce1865fd2a1995 https://www.encodeproject.org/files/ENCFF072MNF/@@download/ENCFF072MNF.bam released s3://encode-public/2016/10/18/f2ea0aed-1963-4e05-85cd-899632662ade/ENCFF072MNF.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF125UCF bam bam alignments ce11 ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF407IAM/, /files/ENCFF913GBN/, /files/ENCFF586MOL/ 272350807 Kevin White, UChicago 07a9017a1ee87693008f2ce6250b8143 https://www.encodeproject.org/files/ENCFF125UCF/@@download/ENCFF125UCF.bam released s3://encode-public/2016/10/19/9c9ece10-e166-4a69-9a48-fd456df5cd6b/ENCFF125UCF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF888RLL bigWig bigWig signal of unique reads ce10 ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF072MNF/ 10002731 Kevin White, UChicago dc68a7366dcb79998cc2f96e6636094d https://www.encodeproject.org/files/ENCFF888RLL/@@download/ENCFF888RLL.bigWig released s3://encode-public/2016/10/20/f74bb0f0-90e0-4a47-9979-0cecb57c0a0c/ENCFF888RLL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF707HZD bigWig bigWig read-depth normalized signal ce10 ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF072MNF/ 10042094 Kevin White, UChicago 652d44db9912bf4010059447aa7b6292 https://www.encodeproject.org/files/ENCFF707HZD/@@download/ENCFF707HZD.bigWig released s3://encode-public/2016/10/20/9aee28c4-3f7b-46e7-854e-4598f1b2d5ac/ENCFF707HZD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF899MPZ bigWig bigWig read-depth normalized signal ce11 ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF125UCF/ 10043096 Kevin White, UChicago 8f9d5455862d2086f8dcbaa4b43b9ebe https://www.encodeproject.org/files/ENCFF899MPZ/@@download/ENCFF899MPZ.bigWig released s3://encode-public/2016/10/20/40c549e0-dfdb-45b1-9ac5-a52050d29063/ENCFF899MPZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF333RYX bigWig bigWig signal of unique reads ce11 ENCSR445KQZ Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF125UCF/ 9999923 Kevin White, UChicago ea19ef1fc99de6ed3389baf1ee1d29a5 https://www.encodeproject.org/files/ENCFF333RYX/@@download/ENCFF333RYX.bigWig released s3://encode-public/2016/10/20/561bec50-33e1-4dcf-859c-8a317b4d321c/ENCFF333RYX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF881DKH fastq fastq reads ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 2 2_1 33 single-ended 117093005 Kevin White, UChicago 522dadfbba8752b477f5645d9faf5df2 https://www.encodeproject.org/files/ENCFF881DKH/@@download/ENCFF881DKH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/25/f1b121b5-1078-41ed-9258-bee8f5ddd081/ENCFF881DKH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF122MFW fastq fastq reads ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1 1_1 31 single-ended 162548329 Kevin White, UChicago 821c85f0810ad646c1096f340c4b1043 https://www.encodeproject.org/files/ENCFF122MFW/@@download/ENCFF122MFW.fastq.gz Illumina Genome Analyzer I /files/ENCFF128NIB/, /files/ENCFF094QNO/, /files/ENCFF122TPK/, /files/ENCFF881IXV/ released s3://encode-public/2016/10/25/58360715-4854-43e9-899e-0521f4361556/ENCFF122MFW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF576YTS fastq fastq reads ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 2 2_1 31 single-ended 154614123 Kevin White, UChicago fce71cfb1330fac9cc3b557a57ea3318 https://www.encodeproject.org/files/ENCFF576YTS/@@download/ENCFF576YTS.fastq.gz Illumina Genome Analyzer I released s3://encode-public/2016/10/25/ed816501-503b-400a-a0a2-532630a69a87/ENCFF576YTS.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF492URA fastq fastq reads ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1 1_1 33 single-ended 148563664 Kevin White, UChicago 30709b60907ca96e090af58dfb0d0d82 https://www.encodeproject.org/files/ENCFF492URA/@@download/ENCFF492URA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/25/d90fdbee-ac6e-42a4-a80a-933d3eceb014/ENCFF492URA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF141EXT fastq fastq reads ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 2 2_1 33 single-ended 85095801 Kevin White, UChicago 32998355599139971bea28285fa99995 https://www.encodeproject.org/files/ENCFF141EXT/@@download/ENCFF141EXT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/25/381646e7-c8ee-4ab6-8f21-a8c050fa2e57/ENCFF141EXT.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF209ZRS bam bam alignments ce10 ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF122MFW/, /files/ENCFF492URA/, /files/ENCFF141EXT/, /files/ENCFF576YTS/, /files/ENCFF881DKH/, /files/ENCFF987UMF/ 684421444 Kevin White, UChicago d1a2387c49d36022b49d66b45c181112 https://www.encodeproject.org/files/ENCFF209ZRS/@@download/ENCFF209ZRS.bam released s3://encode-public/2016/10/26/3118861f-189b-4f8a-8e43-8657c9f82dfe/ENCFF209ZRS.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF325MDH bam bam alignments ce11 ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF122MFW/, /files/ENCFF492URA/, /files/ENCFF141EXT/, /files/ENCFF576YTS/, /files/ENCFF881DKH/, /files/ENCFF586MOL/ 684894188 Kevin White, UChicago 881b370cee0c865b700a051bce6a7544 https://www.encodeproject.org/files/ENCFF325MDH/@@download/ENCFF325MDH.bam released s3://encode-public/2016/10/26/10bc5d59-381e-4518-a4fb-7685fc8a5505/ENCFF325MDH.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF628FUU bigWig bigWig read-depth normalized signal ce10 ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF209ZRS/ 10011870 Kevin White, UChicago f7a2770682c17c7df68f7373b8485194 https://www.encodeproject.org/files/ENCFF628FUU/@@download/ENCFF628FUU.bigWig released s3://encode-public/2016/10/26/d38d763c-272c-4146-a993-a704dd429232/ENCFF628FUU.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF088EDR bigWig bigWig signal of unique reads ce10 ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF209ZRS/ 10043782 Kevin White, UChicago 4c8b28bb6ac8b7be1acbdf8292f44e79 https://www.encodeproject.org/files/ENCFF088EDR/@@download/ENCFF088EDR.bigWig released s3://encode-public/2016/10/26/381ca54c-78e4-4b47-8ea1-c4d444b8a79a/ENCFF088EDR.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF262LKN bigWig bigWig read-depth normalized signal ce11 ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF325MDH/ 10009669 Kevin White, UChicago fe2c53361ac713c43fa8d999355abb33 https://www.encodeproject.org/files/ENCFF262LKN/@@download/ENCFF262LKN.bigWig released s3://encode-public/2016/10/26/bc0bef09-8f7f-43c9-b379-b9da16cd25f6/ENCFF262LKN.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF225GRK bigWig bigWig signal of unique reads ce11 ENCSR443MCM Control ChIP-seq /worm-donors/ENCDO892NGV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176093/'], '@type': ['Target', 'Item'], 'name': 'egl-5-celegans', 'label': 'egl-5', '@id': '/targets/egl-5-celegans/', 'title': 'egl-5 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '130ac4b3-f937-44cb-8dff-13410b8d2433', 'status': 'released'} DNA 2017-09-26 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF325MDH/ 10040731 Kevin White, UChicago 5d5e7f95c0bbfe001046c9f1519047c4 https://www.encodeproject.org/files/ENCFF225GRK/@@download/ENCFF225GRK.bigWig released s3://encode-public/2016/10/26/23c5262d-a8c3-42c3-9eed-eff3ab96f15e/ENCFF225GRK.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF942PMB fastq fastq reads ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 131211081 Michael Snyder, Stanford c38a75224dac4c9e91c693a8b4b9922a https://www.encodeproject.org/files/ENCFF942PMB/@@download/ENCFF942PMB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/555c4590-cbe5-4a2e-ad8d-4adb29d51b3b/ENCFF942PMB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF200LJD fastq fastq reads ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 96985094 Michael Snyder, Stanford c2af6807d0c87378907178f6c2b8a43d https://www.encodeproject.org/files/ENCFF200LJD/@@download/ENCFF200LJD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/fc10d0bb-10b4-4fd5-b0f1-aa0fd88494b6/ENCFF200LJD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF192UJB bam bam alignments ce10 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 /files/ENCFF200LJD/, /files/ENCFF987UMF/ 97277026 Kevin White, UChicago 23851f6dda53dade2de057f984c61a3b https://www.encodeproject.org/files/ENCFF192UJB/@@download/ENCFF192UJB.bam released s3://encode-public/2016/10/24/4e6c3e44-d6fd-4f67-9c8c-925e2a6637bf/ENCFF192UJB.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF563PJZ bam bam alignments ce10 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 /files/ENCFF942PMB/, /files/ENCFF987UMF/ 140819744 Kevin White, UChicago 29b1f27eec94a71df043de9a23d3f53d https://www.encodeproject.org/files/ENCFF563PJZ/@@download/ENCFF563PJZ.bam released s3://encode-public/2016/10/24/fbf214b6-ddce-4fa4-bb9b-833bd9f091b4/ENCFF563PJZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF763SFX bam bam alignments ce11 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 /files/ENCFF200LJD/, /files/ENCFF586MOL/ 97353398 Kevin White, UChicago 52c2567913a422845592532839227602 https://www.encodeproject.org/files/ENCFF763SFX/@@download/ENCFF763SFX.bam released s3://encode-public/2016/10/24/c7f2487a-8b1b-4884-a763-b7b73464244b/ENCFF763SFX.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF860KKD bam bam alignments ce11 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 /files/ENCFF942PMB/, /files/ENCFF586MOL/ 140935611 Kevin White, UChicago 0eeb188d6d418ee34a9f0e841ac81d96 https://www.encodeproject.org/files/ENCFF860KKD/@@download/ENCFF860KKD.bam released s3://encode-public/2016/10/24/80934e19-9ff3-4df2-b719-5280dbaa7668/ENCFF860KKD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF122WGJ bigWig bigWig signal of unique reads ce11 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF763SFX/, /files/ENCFF860KKD/ 9898609 Kevin White, UChicago b1dc13c1189b2ebc243e99d7f607513f https://www.encodeproject.org/files/ENCFF122WGJ/@@download/ENCFF122WGJ.bigWig released s3://encode-public/2016/10/24/72990391-9a0b-49c3-970c-dd7881b0f69c/ENCFF122WGJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF064UFP bigWig bigWig read-depth normalized signal ce10 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF192UJB/, /files/ENCFF563PJZ/ 9900330 Kevin White, UChicago c995ba9632b00e8151bc90df1a0cb577 https://www.encodeproject.org/files/ENCFF064UFP/@@download/ENCFF064UFP.bigWig released s3://encode-public/2016/10/24/f50dda8d-f16e-4d29-88a5-081a72f82ecc/ENCFF064UFP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF132ZOT bigWig bigWig signal of unique reads ce10 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF192UJB/, /files/ENCFF563PJZ/ 9899300 Kevin White, UChicago b98a69804332d80928c7ccc019fb1d01 https://www.encodeproject.org/files/ENCFF132ZOT/@@download/ENCFF132ZOT.bigWig released s3://encode-public/2016/10/24/c06a8ff6-47b0-42b4-b5cf-a65b8ad9ce41/ENCFF132ZOT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF544NIG bigWig bigWig read-depth normalized signal ce11 ENCSR633VXV Control ChIP-seq /worm-donors/ENCDO122PRV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF763SFX/, /files/ENCFF860KKD/ 9898061 Kevin White, UChicago 0993efa4814dfe8bbad42ffc05da0393 https://www.encodeproject.org/files/ENCFF544NIG/@@download/ENCFF544NIG.bigWig released s3://encode-public/2016/10/24/5728d09e-564c-4052-b0a3-2dad2f412f7d/ENCFF544NIG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF642BHL fastq fastq reads ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF321ZMO/ 3582526790 Michael Snyder, Stanford ef103c355b73ed5e1d7fb83be5d115c8 SRA:SRR5111353 https://www.encodeproject.org/files/ENCFF642BHL/@@download/ENCFF642BHL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/18/dd2af7d7-0a01-498d-b120-89cae8c14d52/ENCFF642BHL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF321ZMO fastq fastq reads ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF642BHL/ 3413221797 Michael Snyder, Stanford 62dec73bfe2848b048e46327fb5c24d2 SRA:SRR5111353 https://www.encodeproject.org/files/ENCFF321ZMO/@@download/ENCFF321ZMO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/18/cd555b52-4eb2-41b5-a2c0-0a4c2c93e839/ENCFF321ZMO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF833AEQ fastq fastq reads ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF044RFM/ 3047215443 Michael Snyder, Stanford 2010a0f08abeb2a7809a263347f6c43e SRA:SRR5111352 https://www.encodeproject.org/files/ENCFF833AEQ/@@download/ENCFF833AEQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/18/64320570-04a5-4e67-9a3d-7901d999350c/ENCFF833AEQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF044RFM fastq fastq reads ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF833AEQ/ 2884897265 Michael Snyder, Stanford 37216e026197fa623bfb2747c28d926e SRA:SRR5111352 https://www.encodeproject.org/files/ENCFF044RFM/@@download/ENCFF044RFM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/18/f468cdff-24f0-48b5-96fc-c66c593f6e9b/ENCFF044RFM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF300OIG bam bam unfiltered alignments hg19 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF044RFM/, /files/ENCFF807MUK/, /files/ENCFF833AEQ/ 5704244978 ENCODE Processing Pipeline 61528e41fb5a032eb6be92d633d5d729 https://www.encodeproject.org/files/ENCFF300OIG/@@download/ENCFF300OIG.bam released s3://encode-public/2016/10/27/ec286cbb-0edd-489e-a3bc-bef62ee5603b/ENCFF300OIG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF506YIP bam bam unfiltered alignments hg19 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF321ZMO/, /files/ENCFF807MUK/, /files/ENCFF642BHL/ 6758161816 ENCODE Processing Pipeline c93e2cf12e2f0bdb9373e2d14bb1624f https://www.encodeproject.org/files/ENCFF506YIP/@@download/ENCFF506YIP.bam released s3://encode-public/2016/10/27/657c3c1a-d107-4b83-acbb-fa1bafc77253/ENCFF506YIP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF772FBN bam bam alignments hg19 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF044RFM/, /files/ENCFF807MUK/, /files/ENCFF833AEQ/ 4165153423 ENCODE Processing Pipeline e9afd4771af15e8c7e1bbba2fe7a41eb https://www.encodeproject.org/files/ENCFF772FBN/@@download/ENCFF772FBN.bam released s3://encode-public/2016/10/27/aff3ca69-75aa-44f8-8bd2-4e5a37eaa802/ENCFF772FBN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF529BVI bam bam alignments hg19 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF321ZMO/, /files/ENCFF807MUK/, /files/ENCFF642BHL/ 5019835863 ENCODE Processing Pipeline 1b285e88b8c0d79cf124c0e5ffc580b1 https://www.encodeproject.org/files/ENCFF529BVI/@@download/ENCFF529BVI.bam released s3://encode-public/2016/10/27/aba5d72b-9e3b-4484-9c26-06fd2656d17a/ENCFF529BVI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF812LAJ bam bam unfiltered alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF044RFM/, /files/ENCFF643CGH/, /files/ENCFF833AEQ/ 5710927304 ENCODE Processing Pipeline 4cfe2bd52406f031ccf2483b9ebf3e11 https://www.encodeproject.org/files/ENCFF812LAJ/@@download/ENCFF812LAJ.bam released s3://encode-public/2016/10/27/ee368932-bf2e-4b5b-8ee4-7f6d59b72922/ENCFF812LAJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF080HGX bam bam unfiltered alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF321ZMO/, /files/ENCFF643CGH/, /files/ENCFF642BHL/ 6762873043 ENCODE Processing Pipeline 600d810a13bd77c8a95d2b5c12c70e1f https://www.encodeproject.org/files/ENCFF080HGX/@@download/ENCFF080HGX.bam released s3://encode-public/2016/10/27/3a1bde49-6c55-45d1-8826-ea589442913c/ENCFF080HGX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF802NAW bam bam alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF321ZMO/, /files/ENCFF643CGH/, /files/ENCFF642BHL/ 5024218231 ENCODE Processing Pipeline c49db4e83c6fc90687c8cca894acb2a7 https://www.encodeproject.org/files/ENCFF802NAW/@@download/ENCFF802NAW.bam released s3://encode-public/2016/10/27/f640083d-b499-4a9e-9bd8-7a4d1cc31715/ENCFF802NAW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF705ARK bam bam alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF044RFM/, /files/ENCFF643CGH/, /files/ENCFF833AEQ/ 4168399998 ENCODE Processing Pipeline 2b86f547f4b2c47afec2b111de3e0b51 https://www.encodeproject.org/files/ENCFF705ARK/@@download/ENCFF705ARK.bam released s3://encode-public/2016/10/27/ec4711a2-15f5-41e6-8e17-9c9b2505085b/ENCFF705ARK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF153QBG bam bam alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF321ZMO/, /files/ENCFF642BHL/ 4983800180 ENCODE Processing Pipeline 64ad971e52200454a1c7dff08292e099 https://www.encodeproject.org/files/ENCFF153QBG/@@download/ENCFF153QBG.bam released s3://encode-public/2020/06/03/371b635c-3a20-415f-9d44-55f11af98e0e/ENCFF153QBG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF770WNO bam bam unfiltered alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF321ZMO/, /files/ENCFF642BHL/ 6764088228 ENCODE Processing Pipeline 29c6eb8efe8de4c240c203e7b7861b01 https://www.encodeproject.org/files/ENCFF770WNO/@@download/ENCFF770WNO.bam released s3://encode-public/2020/06/03/824ff434-9355-4f0d-aadf-afeb45c328dd/ENCFF770WNO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF258OYC bam bam unfiltered alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF044RFM/, /files/ENCFF833AEQ/ 5720666434 ENCODE Processing Pipeline 8e099679cb2454779c9beab46b4c31c2 https://www.encodeproject.org/files/ENCFF258OYC/@@download/ENCFF258OYC.bam released s3://encode-public/2020/06/03/ac366d05-df11-4784-9996-eceeee8aae59/ENCFF258OYC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF202SEC bam bam alignments GRCh38 ENCSR272LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF044RFM/, /files/ENCFF833AEQ/ 4123531503 ENCODE Processing Pipeline 434e82f48476f502a5549ddf711bc10a https://www.encodeproject.org/files/ENCFF202SEC/@@download/ENCFF202SEC.bam released s3://encode-public/2020/06/03/3e9aa1dc-e93d-4855-80a6-d16a0b5af7a7/ENCFF202SEC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF075GWC fastq fastq reads ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF682CVU/ 2436914513 Michael Snyder, Stanford 20f485bd98e00186e04deaaa815db1df SRA:SRR6212883 https://www.encodeproject.org/files/ENCFF075GWC/@@download/ENCFF075GWC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/5f609161-5f3c-4140-aae9-aa5022515eb8/ENCFF075GWC.fastq.gz ENCFF682CVU fastq fastq reads ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF075GWC/ 2446595728 Michael Snyder, Stanford 137a655cb277a5c46420762d571fd071 SRA:SRR6212883 https://www.encodeproject.org/files/ENCFF682CVU/@@download/ENCFF682CVU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/b01647d4-fe6d-4e9f-a3a2-da0e0e463653/ENCFF682CVU.fastq.gz ENCFF193IMZ bam bam unfiltered alignments GRCh38 ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF075GWC/, /files/ENCFF682CVU/, /files/ENCFF643CGH/ 5391473972 ENCODE Processing Pipeline 97b31bdae5d7d905f2374c2848a2a65c https://www.encodeproject.org/files/ENCFF193IMZ/@@download/ENCFF193IMZ.bam released s3://encode-public/2016/05/06/2a4e641c-5e08-4bed-977b-f5ba70c747e5/ENCFF193IMZ.bam ENCODE3 GRCh38 archived ENCFF324GFZ bam bam alignments GRCh38 ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF075GWC/, /files/ENCFF682CVU/, /files/ENCFF643CGH/ 4561452645 ENCODE Processing Pipeline d3cd40a39a7eebce5e6bcb7ad65657e6 https://www.encodeproject.org/files/ENCFF324GFZ/@@download/ENCFF324GFZ.bam released s3://encode-public/2016/05/06/6b7b6050-07b7-4e37-84ed-58aa6bba0186/ENCFF324GFZ.bam ENCODE3 GRCh38 archived ENCFF891UST bam bam unfiltered alignments hg19 ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF075GWC/, /files/ENCFF682CVU/ 5383845828 ENCODE Processing Pipeline 7b093ab50c57b65a77b79b2872afc8a3 https://www.encodeproject.org/files/ENCFF891UST/@@download/ENCFF891UST.bam released s3://encode-public/2016/12/06/e185dec8-3d3c-489e-9a0a-b0815e7b14e4/ENCFF891UST.bam ENCODE3 hg19 archived ENCFF153PCL bam bam alignments hg19 ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF075GWC/, /files/ENCFF682CVU/ 4550791229 ENCODE Processing Pipeline 578fce154d8072149f9af3c983f92561 https://www.encodeproject.org/files/ENCFF153PCL/@@download/ENCFF153PCL.bam released s3://encode-public/2016/12/06/ab9c2a49-eb0e-4995-a3d7-0e65de46cfcf/ENCFF153PCL.bam ENCODE3 hg19 archived ENCFF130QWR bam bam unfiltered alignments GRCh38 ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF075GWC/, /files/ENCFF682CVU/ 5372910366 ENCODE Processing Pipeline bc2bfa1ea5af7847dd569e060c079a89 https://www.encodeproject.org/files/ENCFF130QWR/@@download/ENCFF130QWR.bam released s3://encode-public/2020/06/03/cac808a2-b2e9-4796-87cd-d3a40ab6edea/ENCFF130QWR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF978HIB bam bam alignments GRCh38 ENCSR225KOT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF075GWC/, /files/ENCFF682CVU/ 4473654605 ENCODE Processing Pipeline 2ed883987a956b25a32684e9fa69714c https://www.encodeproject.org/files/ENCFF978HIB/@@download/ENCFF978HIB.bam released s3://encode-public/2020/06/03/1cbab643-6079-4fca-b567-6216e01c6c89/ENCFF978HIB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF000ODK bigWig bigWig raw signal hg19 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 1394210 Richard Myers, HAIB 7e4b927b1e231240f3bd92a17c52273a https://www.encodeproject.org/files/ENCFF000ODK/@@download/ENCFF000ODK.bigWig archived s3://encode-public/2012/01/23/b6035df5-628f-4544-9fb9-fec03422caa7/ENCFF000ODK.bigWig Lab custom hg19 archived low read length ENCFF000ODL bam bam alignments hg19 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000ODO/ 958622629 Richard Myers, HAIB fa2c05eec076aac14930bafcd59886a0 https://www.encodeproject.org/files/ENCFF000ODL/@@download/ENCFF000ODL.bam archived s3://encode-public/2012/01/23/6980c14c-0f8a-4112-a826-46e3d4ff41ec/ENCFF000ODL.bam Lab custom hg19 archived low read length ENCFF000ODO fastq fastq reads ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 840176806 Richard Myers, HAIB e9883dc192c338776116748090e4cc45 https://www.encodeproject.org/files/ENCFF000ODO/@@download/ENCFF000ODO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/0437ec4e-09a8-4c09-ac1e-59ddd12c2b1a/ENCFF000ODO.fastq.gz low read length ENCFF399QWL bam bam unfiltered alignments GRCh38 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ODO/ 1112107035 ENCODE Processing Pipeline 3798a82c5942704752212ab14df0a4cf https://www.encodeproject.org/files/ENCFF399QWL/@@download/ENCFF399QWL.bam released s3://encode-public/2016/10/26/aeba3092-e4ce-4d05-98fb-753c908e35eb/ENCFF399QWL.bam ENCODE3 GRCh38 archived low read length ENCFF430ZCF bam bam alignments GRCh38 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ODO/ 795938459 ENCODE Processing Pipeline 7709a527aadca28bfc06f09e5b73dd00 https://www.encodeproject.org/files/ENCFF430ZCF/@@download/ENCFF430ZCF.bam released s3://encode-public/2016/10/26/bf79c77c-870b-4bd5-8156-0b6774939bdc/ENCFF430ZCF.bam ENCODE3 GRCh38 archived low read length ENCFF645KRK bam bam unfiltered alignments hg19 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ODO/ 1110998709 ENCODE Processing Pipeline a47b4eb66c53dae78f4adb06512be0ea https://www.encodeproject.org/files/ENCFF645KRK/@@download/ENCFF645KRK.bam released s3://encode-public/2016/11/13/85228686-5909-49e9-a9f5-420b2c1cd08c/ENCFF645KRK.bam ENCODE3 hg19 archived low read length ENCFF812HUT bam bam alignments hg19 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ODO/ 792278447 ENCODE Processing Pipeline 533c0e06696a882de3c226661f0b7b58 https://www.encodeproject.org/files/ENCFF812HUT/@@download/ENCFF812HUT.bam released s3://encode-public/2016/11/13/34cdd5cf-102a-4770-8749-50cb35c7efb5/ENCFF812HUT.bam ENCODE3 hg19 archived low read length ENCFF612FPN bam bam unfiltered alignments GRCh38 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000ODO/, /files/ENCFF110MCL/ 1084843874 ENCODE Processing Pipeline 86d4d42204c776d0d44b54c2e927cc17 https://www.encodeproject.org/files/ENCFF612FPN/@@download/ENCFF612FPN.bam released s3://encode-public/2020/10/28/64bfa84b-afc8-4688-8205-d13f5bf896bd/ENCFF612FPN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF019QRI bam bam alignments GRCh38 ENCSR000BNF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000ODO/, /files/ENCFF110MCL/ 864903002 ENCODE Processing Pipeline 282ad23c41b218e6ac4a770f2116911d https://www.encodeproject.org/files/ENCFF019QRI/@@download/ENCFF019QRI.bam released s3://encode-public/2020/10/28/fd819f66-5b3b-44d2-85dc-847d9b76b49c/ENCFF019QRI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF656NSI bam bam unfiltered alignments hg19 ENCSR565XPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ATF3'], 'aliases': ['michael-snyder:TS-100'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/467/'], '@type': ['Target', 'Item'], 'label': 'ATF3', 'title': 'ATF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf9cec54-75ce-4795-a4e4-cefc7a6e1191', 'schema_version': '14', 'name': 'ATF3-human', '@id': '/targets/ATF3-human/', 'status': 'released'} hg19 1 212658547 212847095 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF224SOH/, /files/ENCFF451VBV/ 4617780332 ENCODE Processing Pipeline e86931579b4f60aa28ff8e87900c567a https://www.encodeproject.org/files/ENCFF656NSI/@@download/ENCFF656NSI.bam released s3://encode-public/2018/02/22/9d4ab2e0-0192-4077-a7d7-1c8c6a267bd1/ENCFF656NSI.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF451VBV fastq fastq reads ENCSR565XPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ATF3'], 'aliases': ['michael-snyder:TS-100'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/467/'], '@type': ['Target', 'Item'], 'label': 'ATF3', 'title': 'ATF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf9cec54-75ce-4795-a4e4-cefc7a6e1191', 'schema_version': '14', 'name': 'ATF3-human', '@id': '/targets/ATF3-human/', 'status': 'released'} hg19 1 212658547 212847095 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF224SOH/ 2148289483 Michael Snyder, Stanford fb920cb64655fa6f1c7c78e7537959ff SRA:SRR5111805 https://www.encodeproject.org/files/ENCFF451VBV/@@download/ENCFF451VBV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/03/31/8f09b735-c713-4e2b-b69f-6392c74e1dfd/ENCFF451VBV.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF224SOH fastq fastq reads ENCSR565XPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ATF3'], 'aliases': ['michael-snyder:TS-100'], 'organism': {'schema_version': '6', 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ENCSR565XPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ATF3'], 'aliases': ['michael-snyder:TS-100'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/467/'], '@type': ['Target', 'Item'], 'label': 'ATF3', 'title': 'ATF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf9cec54-75ce-4795-a4e4-cefc7a6e1191', 'schema_version': '14', 'name': 'ATF3-human', '@id': '/targets/ATF3-human/', 'status': 'released'} hg19 1 212658547 212847095 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF224SOH/, /files/ENCFF451VBV/ 3785964688 ENCODE Processing Pipeline 6cd5ee2fb8ec3847f862413570920487 https://www.encodeproject.org/files/ENCFF319TDX/@@download/ENCFF319TDX.bam released s3://encode-public/2016/05/21/ef275c51-ba9b-4e45-ba21-7944a02fe2df/ENCFF319TDX.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF744QNF bam bam unfiltered alignments GRCh38 ENCSR565XPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ATF3'], 'aliases': ['michael-snyder:TS-100'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/467/'], '@type': ['Target', 'Item'], 'label': 'ATF3', 'title': 'ATF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf9cec54-75ce-4795-a4e4-cefc7a6e1191', 'schema_version': '14', 'name': 'ATF3-human', '@id': '/targets/ATF3-human/', 'status': 'released'} hg19 1 212658547 212847095 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF224SOH/, /files/ENCFF451VBV/ 4625441364 ENCODE Processing Pipeline e910a4b0658467e55e119c1b079c8de2 https://www.encodeproject.org/files/ENCFF744QNF/@@download/ENCFF744QNF.bam released s3://encode-public/2016/10/29/7fdce322-2939-4d82-89a1-c6f38c3b1585/ENCFF744QNF.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF394JQH bam bam alignments GRCh38 ENCSR565XPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ATF3'], 'aliases': ['michael-snyder:TS-100'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/467/'], '@type': ['Target', 'Item'], 'label': 'ATF3', 'title': 'ATF3 (Homo sapiens)', 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ATF3'], 'aliases': ['michael-snyder:TS-100'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/467/'], '@type': ['Target', 'Item'], 'label': 'ATF3', 'title': 'ATF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf9cec54-75ce-4795-a4e4-cefc7a6e1191', 'schema_version': '14', 'name': 'ATF3-human', '@id': '/targets/ATF3-human/', 'status': 'released'} hg19 1 212658547 212847095 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF224SOH/, /files/ENCFF451VBV/ 3753299277 ENCODE Processing Pipeline 9e737cc8925fe7b32b14973a01bc7d4f https://www.encodeproject.org/files/ENCFF776QOG/@@download/ENCFF776QOG.bam released s3://encode-public/2020/06/02/d971b3d9-b92a-4890-9fd6-48ce35e93531/ENCFF776QOG.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF158HCZ fastq fastq reads ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 single-ended 1907021613 Bradley Bernstein, Broad 737edcb717d8f30d8da93f2b07d8eb04 SRA:SRR5339039 https://www.encodeproject.org/files/ENCFF158HCZ/@@download/ENCFF158HCZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/12/e7110b69-5f45-4a84-9003-b156494c53d8/ENCFF158HCZ.fastq.gz mixed run types ENCFF533XEQ fastq fastq reads ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_2 76 paired-ended 1 /files/ENCFF393TCX/ 977016212 Bradley Bernstein, Broad 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paired-ended 1 /files/ENCFF610BDH/ 944451908 Bradley Bernstein, Broad ad31902a498da33eba577007f936f03f SRA:SRR5339036 https://www.encodeproject.org/files/ENCFF679GQT/@@download/ENCFF679GQT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/77b44dad-9c05-4d69-a105-048fea3cc8cc/ENCFF679GQT.fastq.gz mixed run types ENCFF610BDH fastq fastq reads ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_2 76 paired-ended 2 /files/ENCFF679GQT/ 963822005 Bradley Bernstein, Broad b7e672e39b6f8a9ece34e3a024fe4a4b SRA:SRR5339036 https://www.encodeproject.org/files/ENCFF610BDH/@@download/ENCFF610BDH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/0311ea47-e863-4813-9fbc-feeaf56a24b8/ENCFF610BDH.fastq.gz mixed run types ENCFF682DEF fastq fastq reads ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro 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types ENCFF835QIF fastq fastq reads ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF711KEQ/ 2190060616 Bradley Bernstein, Broad fb1963237789707ba82f1cf049c41421 SRA:SRR5339033 https://www.encodeproject.org/files/ENCFF835QIF/@@download/ENCFF835QIF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/8ea06d93-03fb-46df-ba41-ed0e9d7b2deb/ENCFF835QIF.fastq.gz mixed run types ENCFF711KEQ fastq fastq reads ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 paired-ended 2 /files/ENCFF835QIF/ 2243125313 Bradley Bernstein, Broad 64198a552b1b2c0cf65d2d5b10ae0a84 SRA:SRR5339033 https://www.encodeproject.org/files/ENCFF711KEQ/@@download/ENCFF711KEQ.fastq.gz Illumina HiSeq 2500 released 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https://www.encodeproject.org/files/ENCFF256BQT/@@download/ENCFF256BQT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/24431341-cf6e-418b-8205-c92895fc3f25/ENCFF256BQT.fastq.gz mixed run types ENCFF144ISY bam bam unfiltered alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF835QIF/, /files/ENCFF206YPV/ 4077613583 ENCODE Processing Pipeline 75c6388c32ec9446e4c622191e9fae9d https://www.encodeproject.org/files/ENCFF144ISY/@@download/ENCFF144ISY.bam released s3://encode-public/2016/11/11/f3ea1a54-cd83-42fc-9f81-37e20589cf2b/ENCFF144ISY.bam ENCODE3 GRCh38 archived mixed run types ENCFF757YUE bam bam unfiltered alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF679GQT/, /files/ENCFF533XEQ/, /files/ENCFF082OUX/, /files/ENCFF682DEF/, /files/ENCFF158HCZ/ 5721707347 ENCODE Processing Pipeline e84e996395ca83724827d38760ddde20 https://www.encodeproject.org/files/ENCFF757YUE/@@download/ENCFF757YUE.bam released s3://encode-public/2016/11/11/168c5bb5-c027-4c97-8178-b645e885fc30/ENCFF757YUE.bam ENCODE3 GRCh38 archived mixed run types ENCFF615RXB bam bam alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF679GQT/, /files/ENCFF533XEQ/, /files/ENCFF082OUX/, /files/ENCFF682DEF/, /files/ENCFF158HCZ/ 4804470339 ENCODE Processing Pipeline 635645c5ca2f71a45659c38efb4b6d03 https://www.encodeproject.org/files/ENCFF615RXB/@@download/ENCFF615RXB.bam released s3://encode-public/2016/11/11/ab21a560-5918-49b2-ad58-fe669f18de35/ENCFF615RXB.bam ENCODE3 GRCh38 archived mixed run types ENCFF004LNU bam bam unfiltered alignments hg19 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF679GQT/, /files/ENCFF807MUK/, /files/ENCFF533XEQ/, /files/ENCFF082OUX/, /files/ENCFF682DEF/, /files/ENCFF158HCZ/ 5705345658 ENCODE Processing Pipeline 919deaa8cc0bd44f4a9e158598dad3a2 https://www.encodeproject.org/files/ENCFF004LNU/@@download/ENCFF004LNU.bam released s3://encode-public/2016/11/11/d009f3ea-e4b0-45c5-9662-5c7a2732ba6d/ENCFF004LNU.bam ENCODE3 hg19 archived mixed run types ENCFF175BOB bam bam alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF835QIF/, /files/ENCFF206YPV/ 3406260212 ENCODE Processing Pipeline 9676202638a631c1dec31810cae2aa55 https://www.encodeproject.org/files/ENCFF175BOB/@@download/ENCFF175BOB.bam released s3://encode-public/2016/11/11/ad03d935-c8c3-4c33-9b72-196406543cc8/ENCFF175BOB.bam ENCODE3 GRCh38 archived mixed run types ENCFF762JSN bam bam alignments hg19 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF835QIF/, /files/ENCFF206YPV/ 3402416339 ENCODE Processing Pipeline 0675b5daeb88412813a87a77ae9a2ade https://www.encodeproject.org/files/ENCFF762JSN/@@download/ENCFF762JSN.bam released s3://encode-public/2016/11/11/03646524-9ee2-4ce7-9b5f-1595049188bc/ENCFF762JSN.bam ENCODE3 hg19 archived mixed run types ENCFF387KXA bam bam alignments hg19 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF679GQT/, /files/ENCFF807MUK/, /files/ENCFF533XEQ/, /files/ENCFF082OUX/, /files/ENCFF682DEF/, /files/ENCFF158HCZ/ 4799153452 ENCODE Processing Pipeline 1a31410c5ac0abc2a83e4adada638da2 https://www.encodeproject.org/files/ENCFF387KXA/@@download/ENCFF387KXA.bam released s3://encode-public/2016/11/11/ef38ee31-76a5-4ebc-9f5b-e96762402043/ENCFF387KXA.bam ENCODE3 hg19 archived mixed run types ENCFF834NHB bam bam unfiltered alignments hg19 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF835QIF/, /files/ENCFF206YPV/ 4066670141 ENCODE Processing Pipeline da0d6a1ae14806f07e22754cfd690505 https://www.encodeproject.org/files/ENCFF834NHB/@@download/ENCFF834NHB.bam released s3://encode-public/2016/11/11/20f61513-2489-48e5-8e66-5ca4a243ae11/ENCFF834NHB.bam ENCODE3 hg19 archived mixed run types ENCFF923QSI bam bam unfiltered alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF082OUX/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/, /files/ENCFF158HCZ/, /files/ENCFF110MCL/ 5792225795 ENCODE Processing Pipeline d22b48eeb256d3dd06a40c6701b44224 https://www.encodeproject.org/files/ENCFF923QSI/@@download/ENCFF923QSI.bam released s3://encode-public/2020/09/17/fe81622d-336f-4878-9f32-d991d8f45173/ENCFF923QSI.bam ENCODE4 v1.5.1 GRCh38 released mixed run types ENCFF556SBJ bam bam unfiltered alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 /files/ENCFF206YPV/, /files/ENCFF110MCL/, /files/ENCFF835QIF/ 4131933107 ENCODE Processing Pipeline e35571d3c9bf969412ff5263f46d1f7f https://www.encodeproject.org/files/ENCFF556SBJ/@@download/ENCFF556SBJ.bam released s3://encode-public/2020/09/17/3304f121-c192-41ab-905d-a3d2a3e702c1/ENCFF556SBJ.bam ENCODE4 v1.5.1 GRCh38 released mixed run types ENCFF119VVJ bam bam alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF082OUX/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/, /files/ENCFF158HCZ/, /files/ENCFF110MCL/ 4906349100 ENCODE Processing Pipeline d5cdf39b5de6ebe3dad9a4139b0b06b8 https://www.encodeproject.org/files/ENCFF119VVJ/@@download/ENCFF119VVJ.bam released s3://encode-public/2020/09/17/87437847-e59f-467f-842c-48266497ac39/ENCFF119VVJ.bam ENCODE4 v1.5.1 GRCh38 released mixed run types ENCFF172KPA bam bam alignments GRCh38 ENCSR603SVD Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011020 neural progenitor cell in vitro differentiated cells Homo sapiens DNA 2016-05-26 ENCODE 200-600 2 2_1 76 /files/ENCFF206YPV/, /files/ENCFF110MCL/, /files/ENCFF835QIF/ 3486784769 ENCODE Processing Pipeline 35c90a9b929ab94ba0e84ab3cde8b560 https://www.encodeproject.org/files/ENCFF172KPA/@@download/ENCFF172KPA.bam released s3://encode-public/2020/09/17/bc817810-0f20-4860-950a-42a41424369d/ENCFF172KPA.bam ENCODE4 v1.5.1 GRCh38 released mixed run types ENCFF845FUC bam bam unfiltered alignments hg19 ENCSR121MVZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51193/'], '@type': ['Target', 'Item'], 'label': 'ZNF639', 'title': 'ZNF639 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b595db24-0bb6-47e7-abaa-a46f4f692c87', 'schema_version': '14', 'name': 'ZNF639-human', '@id': '/targets/ZNF639-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF387LKO/, /files/ENCFF807MUK/, /files/ENCFF184BAC/ 1509950391 ENCODE Processing Pipeline 8d63fcab27d7d45c60e783b38e114b7d https://www.encodeproject.org/files/ENCFF845FUC/@@download/ENCFF845FUC.bam released s3://encode-public/2018/02/22/9e3850af-bcad-4706-93db-dcab9198320b/ENCFF845FUC.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF184BAC fastq fastq reads ENCSR121MVZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': 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line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51193/'], '@type': ['Target', 'Item'], 'label': 'ZNF639', 'title': 'ZNF639 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b595db24-0bb6-47e7-abaa-a46f4f692c87', 'schema_version': '14', 'name': 'ZNF639-human', '@id': '/targets/ZNF639-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 794086020 Kevin White, UChicago d94c9b13bb39304dc97f652718da0919 SRA:SRR6212682 https://www.encodeproject.org/files/ENCFF387LKO/@@download/ENCFF387LKO.fastq.gz Illumina HiSeq 2500 /files/ENCFF455LJL/, /files/ENCFF446PVB/ released s3://encode-public/2016/03/26/c2782ae8-13da-4dc6-8039-c3e5bcfd4fe2/ENCFF387LKO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF574IJZ bam bam alignments hg19 ENCSR121MVZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51193/'], '@type': ['Target', 'Item'], 'label': 'ZNF639', 'title': 'ZNF639 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b595db24-0bb6-47e7-abaa-a46f4f692c87', 'schema_version': '14', 'name': 'ZNF639-human', '@id': '/targets/ZNF639-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF387LKO/, /files/ENCFF807MUK/, /files/ENCFF184BAC/ 1158193735 ENCODE Processing Pipeline 2eb79206cd92d061fa3f734667581c4b https://www.encodeproject.org/files/ENCFF574IJZ/@@download/ENCFF574IJZ.bam released s3://encode-public/2016/04/23/33d9382b-a4b6-4c2f-a74c-2ce8d13c91c2/ENCFF574IJZ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF384QXX bam bam unfiltered alignments GRCh38 ENCSR121MVZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51193/'], '@type': ['Target', 'Item'], 'label': 'ZNF639', 'title': 'ZNF639 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b595db24-0bb6-47e7-abaa-a46f4f692c87', 'schema_version': '14', 'name': 'ZNF639-human', '@id': '/targets/ZNF639-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF387LKO/, /files/ENCFF643CGH/, /files/ENCFF184BAC/ 1515112696 ENCODE Processing Pipeline 23d691b458f8b0b818a37ab85ddfd419 https://www.encodeproject.org/files/ENCFF384QXX/@@download/ENCFF384QXX.bam released s3://encode-public/2016/05/06/a9b471d5-82b3-421d-ad6e-6d7dda300b56/ENCFF384QXX.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF635ZZS bam bam alignments GRCh38 ENCSR121MVZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51193/'], '@type': ['Target', 'Item'], 'label': 'ZNF639', 'title': 'ZNF639 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b595db24-0bb6-47e7-abaa-a46f4f692c87', 'schema_version': '14', 'name': 'ZNF639-human', '@id': '/targets/ZNF639-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF387LKO/, /files/ENCFF643CGH/, /files/ENCFF184BAC/ 1157594874 ENCODE Processing Pipeline eeaaca5e0742c7179e350436f563ebb1 https://www.encodeproject.org/files/ENCFF635ZZS/@@download/ENCFF635ZZS.bam released s3://encode-public/2016/05/06/a7bff191-a7f2-4570-9311-735500a17e64/ENCFF635ZZS.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF149JHY bam bam unfiltered alignments GRCh38 ENCSR121MVZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51193/'], '@type': ['Target', 'Item'], 'label': 'ZNF639', 'title': 'ZNF639 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b595db24-0bb6-47e7-abaa-a46f4f692c87', 'schema_version': '14', 'name': 'ZNF639-human', '@id': '/targets/ZNF639-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF184BAC/, /files/ENCFF387LKO/ 1514178248 ENCODE Processing Pipeline dedd6a3110ae1bb4848f9294d4884f88 https://www.encodeproject.org/files/ENCFF149JHY/@@download/ENCFF149JHY.bam released s3://encode-public/2020/10/27/ea93952d-ef91-4447-91b6-c4c04cb4d66a/ENCFF149JHY.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF741VCJ bam bam alignments GRCh38 ENCSR121MVZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF639'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51193/'], '@type': ['Target', 'Item'], 'label': 'ZNF639', 'title': 'ZNF639 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b595db24-0bb6-47e7-abaa-a46f4f692c87', 'schema_version': '14', 'name': 'ZNF639-human', '@id': '/targets/ZNF639-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF184BAC/, /files/ENCFF387LKO/ 1223898926 ENCODE Processing Pipeline 0ba2ac1155e166c6817f8114f4606e26 https://www.encodeproject.org/files/ENCFF741VCJ/@@download/ENCFF741VCJ.bam released s3://encode-public/2020/10/27/5ab6e1d3-4e0f-439c-8d2c-907e229296d8/ENCFF741VCJ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF354EZU fastq fastq reads ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF806BJB/ 3162893797 Michael Snyder, Stanford b2bc31cd797becfdd467929db47d0b4f SRA:SRR5112224 https://www.encodeproject.org/files/ENCFF354EZU/@@download/ENCFF354EZU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/be496d8a-872c-481d-a97e-af57c8cda927/ENCFF354EZU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF806BJB fastq fastq reads ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF354EZU/ 3214537803 Michael Snyder, Stanford dc8d7e1b4a5d9898f8d79984bd6adf27 SRA:SRR5112224 https://www.encodeproject.org/files/ENCFF806BJB/@@download/ENCFF806BJB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/0ec3c388-c0dc-4da1-820f-7bddcb097f3f/ENCFF806BJB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF973YJC bam bam unfiltered alignments hg19 ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF806BJB/, /files/ENCFF354EZU/ 6479653617 ENCODE Processing Pipeline d506b570efd9890c55bd60eb973a97e5 https://www.encodeproject.org/files/ENCFF973YJC/@@download/ENCFF973YJC.bam released s3://encode-public/2016/09/11/ad2d5039-6cbf-4b4f-a169-114dcc490d9a/ENCFF973YJC.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF719FIT bam bam alignments hg19 ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF806BJB/, /files/ENCFF354EZU/ 5390839044 ENCODE Processing Pipeline 90b4ccb481e56930fbdb8a2bbc05e03c https://www.encodeproject.org/files/ENCFF719FIT/@@download/ENCFF719FIT.bam released s3://encode-public/2016/09/11/5e9ced09-060c-4332-af09-0f98b2dc80ba/ENCFF719FIT.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF045PXK bam bam unfiltered alignments GRCh38 ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF806BJB/, /files/ENCFF354EZU/ 6491094161 ENCODE Processing Pipeline 8c268708e8894649d2447c97130c26c3 https://www.encodeproject.org/files/ENCFF045PXK/@@download/ENCFF045PXK.bam released s3://encode-public/2016/09/11/c007d968-6ff7-4db0-baa4-e8650c210d74/ENCFF045PXK.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF375TFT bam bam alignments GRCh38 ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF806BJB/, /files/ENCFF354EZU/ 5395171172 ENCODE Processing Pipeline 9ac408d714c3855ff150695a46e0e99c https://www.encodeproject.org/files/ENCFF375TFT/@@download/ENCFF375TFT.bam released s3://encode-public/2016/09/11/73d36a06-2834-4677-88e3-5a332a481782/ENCFF375TFT.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF654JHZ bam bam alignments GRCh38 ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF354EZU/, /files/ENCFF806BJB/ 5468142907 ENCODE Processing Pipeline 67989aed545802ec693e75c293597969 https://www.encodeproject.org/files/ENCFF654JHZ/@@download/ENCFF654JHZ.bam released s3://encode-public/2020/06/02/f22a1e5d-3a2c-4666-9dc9-cca1b8ddcc54/ENCFF654JHZ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF922CGB bam bam unfiltered alignments GRCh38 ENCSR873PPH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55734/'], '@type': ['Target', 'Item'], 'name': 'ZFP64-human', 'label': 'ZFP64', '@id': '/targets/ZFP64-human/', 'title': 'ZFP64 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6206c68-a4de-4c04-985d-deb5d2794264', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF354EZU/, /files/ENCFF806BJB/ 6578393932 ENCODE Processing Pipeline 1da7c6a71d4aa6d6665be8b3d0cae6c0 https://www.encodeproject.org/files/ENCFF922CGB/@@download/ENCFF922CGB.bam released s3://encode-public/2020/06/02/eabee731-8e32-4f90-b8b1-ffa86aeef259/ENCFF922CGB.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF210LEX fastq fastq reads ENCSR551PYQ Control ChIP-seq /fly-donors/ENCDO060LZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36210/'], '@type': ['Target', 'Item'], 'name': 'CG7745-dmelanogaster', 'label': 'CG7745', '@id': '/targets/CG7745-dmelanogaster/', 'title': 'CG7745 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b994c8b9-68e1-4876-b773-f4a424295253', 'status': 'released'} dm3 2R 11295278 11321058 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 931248981 Kevin White, UChicago cc524c382ad9c003a20187c5f9efa811 https://www.encodeproject.org/files/ENCFF210LEX/@@download/ENCFF210LEX.fastq.gz Illumina HiSeq 4000 /files/ENCFF843EEI/, /files/ENCFF751XKV/ released s3://encode-public/2018/09/18/d0f82c0d-d99b-430a-a6dd-aa672aba2c2d/ENCFF210LEX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF347WMN bam bam alignments dm6 ENCSR551PYQ Control ChIP-seq /fly-donors/ENCDO060LZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36210/'], '@type': ['Target', 'Item'], 'name': 'CG7745-dmelanogaster', 'label': 'CG7745', '@id': '/targets/CG7745-dmelanogaster/', 'title': 'CG7745 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b994c8b9-68e1-4876-b773-f4a424295253', 'status': 'released'} dm3 2R 11295278 11321058 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF210LEX/, /files/ENCFF479RCH/ 1251787435 Kevin White, UChicago 57a9211518d53b83824f52aaaadfa100 https://www.encodeproject.org/files/ENCFF347WMN/@@download/ENCFF347WMN.bam released s3://encode-public/2018/09/19/2bfac42c-7a50-48f8-8700-b122b8d8e7dd/ENCFF347WMN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF039BUW bigWig bigWig signal of unique reads dm6 ENCSR551PYQ Control ChIP-seq /fly-donors/ENCDO060LZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36210/'], '@type': ['Target', 'Item'], 'name': 'CG7745-dmelanogaster', 'label': 'CG7745', '@id': '/targets/CG7745-dmelanogaster/', 'title': 'CG7745 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b994c8b9-68e1-4876-b773-f4a424295253', 'status': 'released'} dm3 2R 11295278 11321058 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF347WMN/ 17775090 Kevin White, UChicago 4a1a98a2a375fbcae4e6eadaf31865cc https://www.encodeproject.org/files/ENCFF039BUW/@@download/ENCFF039BUW.bigWig released s3://encode-public/2018/09/19/d5db7bbc-0e42-49f9-8bae-efe9491d8c3e/ENCFF039BUW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF322HIO bigWig bigWig read-depth normalized signal dm6 ENCSR551PYQ Control ChIP-seq /fly-donors/ENCDO060LZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36210/'], '@type': ['Target', 'Item'], 'name': 'CG7745-dmelanogaster', 'label': 'CG7745', '@id': '/targets/CG7745-dmelanogaster/', 'title': 'CG7745 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b994c8b9-68e1-4876-b773-f4a424295253', 'status': 'released'} dm3 2R 11295278 11321058 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF347WMN/ 17855544 Kevin White, UChicago 0e3f3aacf423f9a875430ff49a00bb58 https://www.encodeproject.org/files/ENCFF322HIO/@@download/ENCFF322HIO.bigWig released s3://encode-public/2018/09/19/92b05292-67e1-42f4-8578-c13587444f07/ENCFF322HIO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF358SFX bam bam unfiltered alignments hg19 ENCSR313ISY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF151WGC/ 1055935605 ENCODE Processing Pipeline b79a147433c125146c87ce3748e7a0d5 https://www.encodeproject.org/files/ENCFF358SFX/@@download/ENCFF358SFX.bam released s3://encode-public/2018/02/22/24df2d66-a096-4b77-a731-2eb158484a56/ENCFF358SFX.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF151WGC fastq fastq reads ENCSR313ISY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 928927222 Richard Myers, HAIB 4f16d17df117bf6921cab7cf8009f058 SRA:SRR8660246 https://www.encodeproject.org/files/ENCFF151WGC/@@download/ENCFF151WGC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/f4529689-7d3e-47ef-923c-35ed07ef9b61/ENCFF151WGC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF694ILQ bam bam unfiltered alignments GRCh38 ENCSR313ISY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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{'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF151WGC/ 825045617 ENCODE Processing Pipeline 741b5473ce2f2b0b25e0b01e9dd9b618 https://www.encodeproject.org/files/ENCFF602FOD/@@download/ENCFF602FOD.bam released s3://encode-public/2016/05/06/8d3822ef-4d8b-4d02-bae8-aebdad147335/ENCFF602FOD.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF973CXB bam bam alignments hg19 ENCSR313ISY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF151WGC/ 825164418 ENCODE Processing Pipeline 218c891eba9bb74234b2a4fa6b8d0333 https://www.encodeproject.org/files/ENCFF973CXB/@@download/ENCFF973CXB.bam released s3://encode-public/2016/05/07/e356f832-6e03-44c5-9eb7-bab7d694e7a8/ENCFF973CXB.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF112ITL bam bam unfiltered alignments GRCh38 ENCSR313ISY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF151WGC/, /files/ENCFF110MCL/ 1050229192 ENCODE Processing Pipeline abb70de0d13ba11cf70f58ae4446af9c https://www.encodeproject.org/files/ENCFF112ITL/@@download/ENCFF112ITL.bam released s3://encode-public/2020/10/27/8237696f-cede-4d94-aa63-6794ac0158a8/ENCFF112ITL.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF306UZZ bam bam alignments GRCh38 ENCSR313ISY Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF151WGC/, /files/ENCFF110MCL/ 857290106 ENCODE Processing Pipeline aa57eab35d54019c97c56e59e1879264 https://www.encodeproject.org/files/ENCFF306UZZ/@@download/ENCFF306UZZ.bam released s3://encode-public/2020/10/27/cd8dfcc9-68a9-428b-a7cf-7111bd944549/ENCFF306UZZ.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF668LQF fastq fastq reads ENCSR840JVQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 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ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286128/'], '@type': ['Target', 'Item'], 'name': 'ZFP41-human', 'label': 'ZFP41', '@id': '/targets/ZFP41-human/', 'title': 'ZFP41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '260608a7-e438-4d06-bc82-fa2b6be3ed97', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF668LQF/, /files/ENCFF169WOT/ 6394519789 ENCODE Processing Pipeline 57975934f3076e8b66b31d8a0d3f3b39 https://www.encodeproject.org/files/ENCFF266YGK/@@download/ENCFF266YGK.bam released s3://encode-public/2016/09/11/f752b7ee-e69f-4693-a724-c02bb4b9486b/ENCFF266YGK.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF477HPX bam bam unfiltered alignments GRCh38 ENCSR840JVQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286128/'], '@type': ['Target', 'Item'], 'name': 'ZFP41-human', 'label': 'ZFP41', '@id': '/targets/ZFP41-human/', 'title': 'ZFP41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '260608a7-e438-4d06-bc82-fa2b6be3ed97', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF668LQF/, /files/ENCFF169WOT/, /files/ENCFF643CGH/ 6404696947 ENCODE Processing Pipeline 2bcf9b52ed5ec902f45c6c2002564613 https://www.encodeproject.org/files/ENCFF477HPX/@@download/ENCFF477HPX.bam released s3://encode-public/2016/09/11/5ca6271a-26e8-4777-abfb-5cb099633358/ENCFF477HPX.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF558XTN bam bam alignments GRCh38 ENCSR840JVQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286128/'], '@type': ['Target', 'Item'], 'name': 'ZFP41-human', 'label': 'ZFP41', '@id': '/targets/ZFP41-human/', 'title': 'ZFP41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '260608a7-e438-4d06-bc82-fa2b6be3ed97', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF668LQF/, /files/ENCFF169WOT/, /files/ENCFF643CGH/ 5359501128 ENCODE Processing Pipeline e29cfc427b050b1012035efdfd5b1848 https://www.encodeproject.org/files/ENCFF558XTN/@@download/ENCFF558XTN.bam released s3://encode-public/2016/09/11/9bc56463-f5d8-49c3-a89b-8e49b8d08989/ENCFF558XTN.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF924NUV bam bam alignments hg19 ENCSR840JVQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286128/'], '@type': ['Target', 'Item'], 'name': 'ZFP41-human', 'label': 'ZFP41', '@id': '/targets/ZFP41-human/', 'title': 'ZFP41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '260608a7-e438-4d06-bc82-fa2b6be3ed97', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF668LQF/, /files/ENCFF169WOT/ 6492442305 ENCODE Processing Pipeline 0fd93337e0ce05cb631247dcd8995c3e https://www.encodeproject.org/files/ENCFF421FKW/@@download/ENCFF421FKW.bam released s3://encode-public/2020/06/02/a5bc12e3-1bfb-4000-8eb6-e203e185d87a/ENCFF421FKW.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF856XMU bam bam alignments GRCh38 ENCSR840JVQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286128/'], '@type': ['Target', 'Item'], 'name': 'ZFP41-human', 'label': 'ZFP41', '@id': '/targets/ZFP41-human/', 'title': 'ZFP41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '260608a7-e438-4d06-bc82-fa2b6be3ed97', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF668LQF/, /files/ENCFF169WOT/ 5446792563 ENCODE Processing Pipeline 99858f3d6ce82f2cec56c00c3fa64f91 https://www.encodeproject.org/files/ENCFF856XMU/@@download/ENCFF856XMU.bam released s3://encode-public/2020/06/02/5c6cffa3-eb50-4431-80fa-1114ddf0382c/ENCFF856XMU.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF424COJ tagAlign tagAlign alignments hg19 ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF027ECC/ 233906879 Anshul Kundaje, Stanford cf836f30959814b15a8ef5d71fadf2c6 https://www.encodeproject.org/files/ENCFF424COJ/@@download/ENCFF424COJ.tagAlign.gz archived s3://encode-public/2016/03/30/ad20363c-b0a3-4c8e-af50-42b9713f543d/ENCFF424COJ.tagAlign.gz low read length ENCFF027ECC fastq fastq reads ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1863127813 Zhiping Weng, UMass a99218f92b105b6a0a0b72ea29a9163a SRA:SRR1067506 https://www.encodeproject.org/files/ENCFF027ECC/@@download/ENCFF027ECC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/22/e327b720-5b99-45bd-95db-06f59d768a91/ENCFF027ECC.fastq.gz low read length ENCFF401AGN bam bam unfiltered alignments hg19 ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF027ECC/ 2158075545 ENCODE Processing Pipeline daf824bc7bcc5ddc6e9dfbf8eb949887 https://www.encodeproject.org/files/ENCFF401AGN/@@download/ENCFF401AGN.bam released s3://encode-public/2016/12/19/4b25ba2a-8873-46c8-91a3-9daaec670214/ENCFF401AGN.bam ENCODE3 hg19 archived low read length ENCFF802DBE bam bam unfiltered alignments GRCh38 ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF027ECC/ 2173850172 ENCODE Processing Pipeline 4f64e2f0e1502840942105f92ac92aee https://www.encodeproject.org/files/ENCFF802DBE/@@download/ENCFF802DBE.bam released s3://encode-public/2016/12/19/deb85f87-0a1c-459e-8eff-e3c0338feb66/ENCFF802DBE.bam ENCODE3 GRCh38 archived low read length ENCFF477PAQ bam bam alignments hg19 ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF027ECC/ 1466626242 ENCODE Processing Pipeline 983c0b6a3128740e876b03aed1b0fac8 https://www.encodeproject.org/files/ENCFF477PAQ/@@download/ENCFF477PAQ.bam released s3://encode-public/2016/12/19/856c0a5d-dc17-4020-9a54-c5dcdfe883eb/ENCFF477PAQ.bam ENCODE3 hg19 archived low read length ENCFF734CTK bam bam alignments GRCh38 ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF027ECC/ 1466410385 ENCODE Processing Pipeline b6af824c2ec0cc4bc1d7d14c49a2dabf https://www.encodeproject.org/files/ENCFF734CTK/@@download/ENCFF734CTK.bam released s3://encode-public/2016/12/19/16e8d257-e4a0-49b0-81a3-d9759fea91a2/ENCFF734CTK.bam ENCODE3 GRCh38 archived low read length ENCFF734DPD bam bam unfiltered alignments GRCh38 ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF027ECC/, /files/ENCFF110MCL/ 2109377130 ENCODE Processing Pipeline 6622e34a71eed308a3ba812a7d71392c https://www.encodeproject.org/files/ENCFF734DPD/@@download/ENCFF734DPD.bam released s3://encode-public/2020/08/06/fb25059f-2ade-4beb-be84-e2b86d798f57/ENCFF734DPD.bam ENCODE4 GRCh38 released low read length ENCFF435DYM bam bam alignments GRCh38 ENCSR494FGC Control ChIP-seq /human-donors/ENCDO316SVQ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF027ECC/, /files/ENCFF110MCL/ 1596509053 ENCODE Processing Pipeline 41850ac39687eb0f7d0364089199856e https://www.encodeproject.org/files/ENCFF435DYM/@@download/ENCFF435DYM.bam released s3://encode-public/2020/08/06/a9026cbe-7cae-430e-a25d-27fa09425544/ENCFF435DYM.bam ENCODE4 GRCh38 released low read length ENCFF572MHI tagAlign tagAlign alignments hg19 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF422GYG/, /files/ENCFF451EVC/ 152990756 Anshul Kundaje, Stanford 9fb1988bc25695c21132cdd9f1a27655 https://www.encodeproject.org/files/ENCFF572MHI/@@download/ENCFF572MHI.tagAlign.gz archived s3://encode-public/2016/03/30/b6990a79-0777-49a6-831a-e12f667ecdfd/ENCFF572MHI.tagAlign.gz Lab custom hg19 archived low read depth, mixed read lengths ENCFF419IZV bam bam unfiltered alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 51 /files/ENCFF202IDR/, /files/ENCFF110MCL/, /files/ENCFF610XLV/, /files/ENCFF791VTH/ 1849598007 ENCODE Processing Pipeline 29d50729ec13a2a8df79060822a05fc3 https://www.encodeproject.org/files/ENCFF419IZV/@@download/ENCFF419IZV.bam released s3://encode-public/2020/10/08/8b7a6d0a-541b-4aa9-8b1f-b9b549883489/ENCFF419IZV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, mixed read lengths ENCFF222YHS tagAlign tagAlign alignments hg19 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 /files/ENCFF202IDR/, /files/ENCFF610XLV/, /files/ENCFF791VTH/ 57402705 Anshul Kundaje, Stanford 93044d456c007072bf81c2c5bff861d5 https://www.encodeproject.org/files/ENCFF222YHS/@@download/ENCFF222YHS.tagAlign.gz archived s3://encode-public/2016/03/30/31b270c8-514f-48a8-8816-1ec8f601b6b0/ENCFF222YHS.tagAlign.gz Lab custom hg19 archived low read depth, mixed read lengths ENCFF202IDR fastq fastq reads ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 76 single-ended 780876172 Joseph Costello, UCSF 514964820c344de482efd2d26822e94e SRA:SRR018482 https://www.encodeproject.org/files/ENCFF202IDR/@@download/ENCFF202IDR.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2017/11/28/c4c0a424-51df-4c23-ac08-d1694e84ea36/ENCFF202IDR.fastq.gz low read depth, mixed read lengths ENCFF791VTH fastq fastq reads ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 76 single-ended 1177674427 Joseph Costello, UCSF ef5f5b9cb3f2a31adcad7b6299d9aa8c SRA:SRR018484 https://www.encodeproject.org/files/ENCFF791VTH/@@download/ENCFF791VTH.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2017/11/28/8af7439a-71f2-4516-9a67-88c6003f205a/ENCFF791VTH.fastq.gz low read depth, mixed read lengths ENCFF610XLV fastq fastq reads ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 51 single-ended 330188602 Joseph Costello, UCSF 09df1e8d61e145819678b4e7d2cf2fee SRA:SRR018483 https://www.encodeproject.org/files/ENCFF610XLV/@@download/ENCFF610XLV.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2017/11/28/dcb27049-ac08-4273-9411-ed8b96ec21db/ENCFF610XLV.fastq.gz low read depth, mixed read lengths ENCFF451EVC fastq fastq reads ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 single-ended 1911438904 Joseph Costello, UCSF 3e8f5324f19e021a61b09c959250dcbc SRA:SRR026669 https://www.encodeproject.org/files/ENCFF451EVC/@@download/ENCFF451EVC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/11/29/933e1be4-c41a-4659-b547-9faa69cf67e4/ENCFF451EVC.fastq.gz low read depth, mixed read lengths ENCFF422GYG fastq fastq reads ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 single-ended 1794045257 Joseph Costello, UCSF 7ba1618e25e8ea8e94df8ff01dd17f12 SRA:SRR2173348 https://www.encodeproject.org/files/ENCFF422GYG/@@download/ENCFF422GYG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/11/29/295494a7-661c-467e-9180-57646e1166dd/ENCFF422GYG.fastq.gz low read depth, mixed read lengths ENCFF711GKY bam bam unfiltered alignments hg19 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF451EVC/, /files/ENCFF807MUK/, /files/ENCFF422GYG/ 2803955696 ENCODE Processing Pipeline 679d9c4fa4e80c59ae7e31fc2fc80d5b https://www.encodeproject.org/files/ENCFF711GKY/@@download/ENCFF711GKY.bam released s3://encode-public/2017/12/06/dbd9f4d3-fe2e-48f1-bd41-e3ead9d34912/ENCFF711GKY.bam ENCODE3 hg19 archived low read depth, mixed read lengths ENCFF088TXX bam bam alignments hg19 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 50 /files/ENCFF202IDR/, /files/ENCFF791VTH/, /files/ENCFF807MUK/, /files/ENCFF610XLV/ 892562884 ENCODE Processing Pipeline 3ef89d4a7797c9fbfc767f365edca451 https://www.encodeproject.org/files/ENCFF088TXX/@@download/ENCFF088TXX.bam released s3://encode-public/2017/12/06/ab57b51f-8cbd-4c56-b82c-c872752eb097/ENCFF088TXX.bam ENCODE3 hg19 archived low read depth, mixed read lengths ENCFF717QWP bam bam alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 50 /files/ENCFF202IDR/, /files/ENCFF791VTH/, /files/ENCFF643CGH/, /files/ENCFF610XLV/ 892485892 ENCODE Processing Pipeline 6046bb8715a7b7d661e0a2c02587a04e https://www.encodeproject.org/files/ENCFF717QWP/@@download/ENCFF717QWP.bam released s3://encode-public/2017/12/06/15541d05-e767-4e1a-9fd7-53c0f139c948/ENCFF717QWP.bam ENCODE3 GRCh38 archived low read depth, mixed read lengths ENCFF109MVX bam bam unfiltered alignments hg19 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 50 /files/ENCFF202IDR/, /files/ENCFF791VTH/, /files/ENCFF807MUK/, /files/ENCFF610XLV/ 1754505982 ENCODE Processing Pipeline 445bd56f0d807d61983a79935134937f https://www.encodeproject.org/files/ENCFF109MVX/@@download/ENCFF109MVX.bam released s3://encode-public/2017/12/06/9227f0f6-16ad-4962-baf0-6bde43cadf42/ENCFF109MVX.bam ENCODE3 hg19 archived low read depth, mixed read lengths ENCFF946BBG bam bam unfiltered alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 50 /files/ENCFF202IDR/, /files/ENCFF791VTH/, /files/ENCFF643CGH/, /files/ENCFF610XLV/ 1759158570 ENCODE Processing Pipeline 0d9fcf165ee10a153cf35a4005b24b7a https://www.encodeproject.org/files/ENCFF946BBG/@@download/ENCFF946BBG.bam released s3://encode-public/2017/12/06/c9192a1c-77ec-4968-affc-e44dfdb94b41/ENCFF946BBG.bam ENCODE3 GRCh38 archived low read depth, mixed read lengths ENCFF436FDO bam bam alignments hg19 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF451EVC/, /files/ENCFF807MUK/, /files/ENCFF422GYG/ 1588615292 ENCODE Processing Pipeline 83cfc416f0e1d34ed90b60cedb554ba5 https://www.encodeproject.org/files/ENCFF436FDO/@@download/ENCFF436FDO.bam released s3://encode-public/2017/12/06/8ad34177-c0c4-4a41-b42e-4cf16b114627/ENCFF436FDO.bam ENCODE3 hg19 archived low read depth, mixed read lengths ENCFF843PKT bam bam alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF451EVC/, /files/ENCFF643CGH/, /files/ENCFF422GYG/ 1589657946 ENCODE Processing Pipeline 8ae53ede21f8e9ed5c0712bf9ded7e19 https://www.encodeproject.org/files/ENCFF843PKT/@@download/ENCFF843PKT.bam released s3://encode-public/2017/12/06/88767a27-0b8f-4712-8ae2-2efcd4f55c7b/ENCFF843PKT.bam ENCODE3 GRCh38 archived low read depth, mixed read lengths ENCFF966MKA bam bam unfiltered alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF451EVC/, /files/ENCFF643CGH/, /files/ENCFF422GYG/ 2812098725 ENCODE Processing Pipeline e03725ce21bb9d342548f3ce8368f866 https://www.encodeproject.org/files/ENCFF966MKA/@@download/ENCFF966MKA.bam released s3://encode-public/2017/12/06/e3ee7d3b-f45e-40bf-a3d1-7aec9e93bcb1/ENCFF966MKA.bam ENCODE3 GRCh38 archived low read depth, mixed read lengths ENCFF722ODM bam bam unfiltered alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 51 /files/ENCFF451EVC/, /files/ENCFF110MCL/, /files/ENCFF422GYG/ 2855177831 ENCODE Processing Pipeline 038fd76c73076de55ff1ca9c41c117a3 https://www.encodeproject.org/files/ENCFF722ODM/@@download/ENCFF722ODM.bam released s3://encode-public/2020/10/08/d8a56a1b-7549-4a2f-aa5f-45a8126b1ce4/ENCFF722ODM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, mixed read lengths ENCFF387ORV bam bam alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 51 /files/ENCFF451EVC/, /files/ENCFF110MCL/, /files/ENCFF422GYG/ 1715708098 ENCODE Processing Pipeline bd3a42eb2f1c95cc6e61796981420721 https://www.encodeproject.org/files/ENCFF387ORV/@@download/ENCFF387ORV.bam released s3://encode-public/2020/10/08/8ffa628a-4deb-40ef-a601-e0219b4194ca/ENCFF387ORV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, mixed read lengths ENCFF153QJN bam bam alignments GRCh38 ENCSR543PVV Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_3 51 /files/ENCFF202IDR/, /files/ENCFF110MCL/, /files/ENCFF610XLV/, /files/ENCFF791VTH/ 825242721 ENCODE Processing Pipeline c0a5557a9e02b97d1c24caad747bd1ad https://www.encodeproject.org/files/ENCFF153QJN/@@download/ENCFF153QJN.bam released s3://encode-public/2020/10/08/40628e95-7f9f-4ebf-b740-3b4ca6fef5d8/ENCFF153QJN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, mixed read lengths ENCFF643PJM fastq fastq reads ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF089HUB/ 2914313372 Michael Snyder, Stanford 3fcc7a589721755709575c30b586a8bc SRA:SRR5111121 https://www.encodeproject.org/files/ENCFF643PJM/@@download/ENCFF643PJM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/f33f9635-f599-4522-bbc7-f1a513685aa8/ENCFF643PJM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF089HUB fastq fastq reads ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF643PJM/ 2965944496 Michael Snyder, Stanford af3348a5dda71adcf9b5818eec65f91f SRA:SRR5111121 https://www.encodeproject.org/files/ENCFF089HUB/@@download/ENCFF089HUB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/e92e280e-5e27-4074-bf97-7c5d6cfed86b/ENCFF089HUB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF619JNV bam bam unfiltered alignments GRCh38 ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF089HUB/, /files/ENCFF643CGH/, /files/ENCFF643PJM/ 5893258276 ENCODE Processing Pipeline c1657afb923a8644b3ab9a7cb531c516 https://www.encodeproject.org/files/ENCFF619JNV/@@download/ENCFF619JNV.bam released s3://encode-public/2016/09/11/4b0800e9-f200-4c70-bedd-72dd9da04233/ENCFF619JNV.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF959NZH bam bam unfiltered alignments hg19 ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF089HUB/, /files/ENCFF807MUK/, /files/ENCFF643PJM/ 5886933380 ENCODE Processing Pipeline e8b8860c587b34f7ce30515c30b69d6e https://www.encodeproject.org/files/ENCFF959NZH/@@download/ENCFF959NZH.bam released s3://encode-public/2016/09/11/9f13dba1-042a-48a9-ba18-026ddb643c47/ENCFF959NZH.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF912ENJ bam bam alignments GRCh38 ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF089HUB/, /files/ENCFF643CGH/, /files/ENCFF643PJM/ 4924507452 ENCODE Processing Pipeline c89eaf2b194b24c5daacdb592eb86f36 https://www.encodeproject.org/files/ENCFF912ENJ/@@download/ENCFF912ENJ.bam released s3://encode-public/2016/09/11/aee7c626-b7bb-496f-8224-67f9941e6a82/ENCFF912ENJ.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF126LHB bam bam alignments hg19 ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF089HUB/, /files/ENCFF807MUK/, /files/ENCFF643PJM/ 4922555765 ENCODE Processing Pipeline e4635a0d061bb07fc5b4b5ee1d13914c https://www.encodeproject.org/files/ENCFF126LHB/@@download/ENCFF126LHB.bam released s3://encode-public/2016/09/11/14c151ca-c272-463d-b12f-4a528512569c/ENCFF126LHB.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF513IPC bam bam unfiltered alignments GRCh38 ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF643PJM/, /files/ENCFF089HUB/ 5967066530 ENCODE Processing Pipeline 10baa760ee1755972867f8267112133c https://www.encodeproject.org/files/ENCFF513IPC/@@download/ENCFF513IPC.bam released s3://encode-public/2020/06/02/72dc3b2e-1d40-456f-a874-5c63fa14b006/ENCFF513IPC.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF065LBX bam bam alignments GRCh38 ENCSR110ZVM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1490'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9422/'], '@type': ['Target', 'Item'], 'name': 'ZNF264-human', 'label': 'ZNF264', '@id': '/targets/ZNF264-human/', 'title': 'ZNF264 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39e11f6a-d639-4af0-a72e-0ceb988515f3', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF643PJM/, /files/ENCFF089HUB/ 4968200829 ENCODE Processing Pipeline c75472ad9a1f56f5f53f27a74049059d https://www.encodeproject.org/files/ENCFF065LBX/@@download/ENCFF065LBX.bam released s3://encode-public/2020/06/02/5779b87a-bd6c-4964-b583-0ef0d6166ba9/ENCFF065LBX.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF000XQR fastq fastq reads ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 single-ended 165852269 Michael Snyder, Stanford 1bbf3a003ba3b2f6b5d0cedbda9b63e1 https://www.encodeproject.org/files/ENCFF000XQR/@@download/ENCFF000XQR.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/23309cdc-18cb-4528-9807-48d9120293f8/ENCFF000XQR.fastq.gz insufficient read length extremely low read depth ENCFF000XQS fastq fastq reads ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 single-ended 160426939 Michael Snyder, Stanford b363b1cbd04a3bea3c788cc710971250 https://www.encodeproject.org/files/ENCFF000XQS/@@download/ENCFF000XQS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/e565682d-d6de-4c10-af12-164f88b7a0aa/ENCFF000XQS.fastq.gz insufficient read length extremely low read depth ENCFF000XSA bam bam alignments hg19 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XQR/ 218507040 Michael Snyder, Stanford e38a34083d74999ed5ba2025a5143070 https://www.encodeproject.org/files/ENCFF000XSA/@@download/ENCFF000XSA.bam archived s3://encode-public/2012/07/01/c3910629-ab9e-4832-9801-320d8144cb21/ENCFF000XSA.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000XSB bam bam alignments hg19 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000XQS/ 213526656 Michael Snyder, Stanford c0a79c32c4b96aade8a5e65160919643 https://www.encodeproject.org/files/ENCFF000XSB/@@download/ENCFF000XSB.bam archived s3://encode-public/2012/07/01/dca1df97-f040-4ec5-9055-830b2912fe7c/ENCFF000XSB.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000XSC bigWig bigWig signal hg19 ENCSR000EES Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 293977672 Michael Snyder, Stanford 28841bc5a8353b5f63f343a51ca615fd https://www.encodeproject.org/files/ENCFF000XSC/@@download/ENCFF000XSC.bigWig archived s3://encode-public/2012/07/01/eadb5a08-232f-49da-a0c4-91518949fff0/ENCFF000XSC.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF628KSG bam bam unfiltered alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000XQS/ 214293806 ENCODE Processing Pipeline 65e7991f7e27912599f2eebd543dbc20 https://www.encodeproject.org/files/ENCFF628KSG/@@download/ENCFF628KSG.bam released s3://encode-public/2016/10/26/895e70c7-2260-4450-822d-37ac563732d4/ENCFF628KSG.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF332OIG bam bam alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000XQS/ 121896938 ENCODE Processing Pipeline 8a5eb964693b078d767609a3b27dcf58 https://www.encodeproject.org/files/ENCFF332OIG/@@download/ENCFF332OIG.bam released s3://encode-public/2016/10/26/07fa4fd8-165d-410b-adee-f1c7a679347f/ENCFF332OIG.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF909YMO bam bam alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000XQR/ 123145777 ENCODE Processing Pipeline e254cd170c692a7046905037d769c742 https://www.encodeproject.org/files/ENCFF909YMO/@@download/ENCFF909YMO.bam released s3://encode-public/2016/10/26/ea4888ad-a0ca-40f1-91b2-b68c17fea43f/ENCFF909YMO.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF949TKQ bam bam unfiltered alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000XQR/ 219334764 ENCODE Processing Pipeline 882ef93d94633e29682f23ce04550501 https://www.encodeproject.org/files/ENCFF949TKQ/@@download/ENCFF949TKQ.bam released s3://encode-public/2016/10/26/1615848a-bf0a-4820-95d6-b2fd187f607d/ENCFF949TKQ.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF845TOU bam bam unfiltered alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XQR/, /files/ENCFF110MCL/ 205705872 ENCODE Processing Pipeline 9c95feafcf208d86f586a00df46e6c39 https://www.encodeproject.org/files/ENCFF845TOU/@@download/ENCFF845TOU.bam released s3://encode-public/2020/10/27/8f28c524-85ca-4982-a785-dabb0fd21e44/ENCFF845TOU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF700USU bam bam unfiltered alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000XQS/, /files/ENCFF110MCL/ 200761677 ENCODE Processing Pipeline 5b3909b4b187c16f43332b6db5245748 https://www.encodeproject.org/files/ENCFF700USU/@@download/ENCFF700USU.bam released s3://encode-public/2020/10/27/1aaa79d4-e0f9-4bdd-94a4-253f2d42b4f7/ENCFF700USU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF440OFC bam bam alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XQR/, /files/ENCFF110MCL/ 120551336 ENCODE Processing Pipeline 79d9d548d254e698a2705aa06de75f90 https://www.encodeproject.org/files/ENCFF440OFC/@@download/ENCFF440OFC.bam released s3://encode-public/2020/10/27/26530da9-03f1-48b3-950c-9c41040a9251/ENCFF440OFC.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF597UUI bam bam alignments GRCh38 ENCSR000EES Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens forskolin, pyruvate 1 mM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000XQS/, /files/ENCFF110MCL/ 126890113 ENCODE Processing Pipeline f53f8b69a8c327e180d768efd5f8e859 https://www.encodeproject.org/files/ENCFF597UUI/@@download/ENCFF597UUI.bam released s3://encode-public/2020/10/27/9ab641e5-63fd-4888-824e-86529ca1ce0b/ENCFF597UUI.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF267RPM fastq fastq reads ENCSR392OLY Control ChIP-seq /fly-donors/ENCDO807ATP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31336/'], '@type': ['Target', 'Item'], 'name': 'fd3F-dmelanogaster', 'label': 'fd3F', '@id': '/targets/fd3F-dmelanogaster/', 'title': 'fd3F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8bd82656-4579-474a-b99d-a87bbb22cd46', 'status': 'released'} dm3 X 3688834 3709179 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1874067092 Kevin White, UChicago 2e66b6ef9b4d06b9424632ca750152fa https://www.encodeproject.org/files/ENCFF267RPM/@@download/ENCFF267RPM.fastq.gz Illumina HiSeq 4000 /files/ENCFF743SWS/ released s3://encode-public/2018/09/18/eab0f42f-401b-4729-9d93-8f282a5696ad/ENCFF267RPM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF672KXC bam bam alignments dm6 ENCSR392OLY Control ChIP-seq /fly-donors/ENCDO807ATP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31336/'], '@type': ['Target', 'Item'], 'name': 'fd3F-dmelanogaster', 'label': 'fd3F', '@id': '/targets/fd3F-dmelanogaster/', 'title': 'fd3F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8bd82656-4579-474a-b99d-a87bbb22cd46', 'status': 'released'} dm3 X 3688834 3709179 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF267RPM/, /files/ENCFF479RCH/ 2553928373 Kevin White, UChicago 4e2cab64339ec8d4288c60455351c332 https://www.encodeproject.org/files/ENCFF672KXC/@@download/ENCFF672KXC.bam released s3://encode-public/2018/09/19/3c455832-a29b-4f2c-947b-4ebeccccc07d/ENCFF672KXC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF284WFY bigWig bigWig signal of unique reads dm6 ENCSR392OLY Control ChIP-seq /fly-donors/ENCDO807ATP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31336/'], '@type': ['Target', 'Item'], 'name': 'fd3F-dmelanogaster', 'label': 'fd3F', '@id': '/targets/fd3F-dmelanogaster/', 'title': 'fd3F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8bd82656-4579-474a-b99d-a87bbb22cd46', 'status': 'released'} dm3 X 3688834 3709179 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF672KXC/ 17883830 Kevin White, UChicago 282b90fd915f4cd611328c3bdf3d585e https://www.encodeproject.org/files/ENCFF284WFY/@@download/ENCFF284WFY.bigWig released s3://encode-public/2018/09/19/6924c563-ae55-4bb5-9b80-57de7ebd86f5/ENCFF284WFY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF982YXR bigWig bigWig read-depth normalized signal dm6 ENCSR392OLY Control ChIP-seq /fly-donors/ENCDO807ATP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31336/'], '@type': ['Target', 'Item'], 'name': 'fd3F-dmelanogaster', 'label': 'fd3F', '@id': '/targets/fd3F-dmelanogaster/', 'title': 'fd3F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8bd82656-4579-474a-b99d-a87bbb22cd46', 'status': 'released'} dm3 X 3688834 3709179 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF672KXC/ 17969831 Kevin White, UChicago 12a80195c68c94e3f9fda65e79a8437e https://www.encodeproject.org/files/ENCFF982YXR/@@download/ENCFF982YXR.bigWig released s3://encode-public/2018/09/19/7b8e3ce9-c76a-4001-a5f9-e3d33978c941/ENCFF982YXR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000VQO fastq fastq reads ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 994641391 Peggy Farnham, USC b92f6c743bb486a0e487c83fabef3726 SRA:SRR10049451 https://www.encodeproject.org/files/ENCFF000VQO/@@download/ENCFF000VQO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/f7d0ace9-423c-4f63-9501-4ded651211bc/ENCFF000VQO.fastq.gz low read length ENCFF000VQS bigWig bigWig signal hg19 ENCSR000EUH Control ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 366163210 Peggy Farnham, USC fe6710be2f3d384e99a21d1b1e59dc3a https://www.encodeproject.org/files/ENCFF000VQS/@@download/ENCFF000VQS.bigWig archived s3://encode-public/2010/12/06/1890f38e-8587-48cb-aae4-f9a926931011/ENCFF000VQS.bigWig Lab custom hg19 archived low read length ENCFF000VQT bam bam alignments hg19 ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 32 919593503 Peggy Farnham, USC 5ae0ac0cd396f7e0d8f316ddf593e267 https://www.encodeproject.org/files/ENCFF000VQT/@@download/ENCFF000VQT.bam archived s3://encode-public/2010/12/06/9ddde3c6-0b20-4455-86b1-c2cfd97ea182/ENCFF000VQT.bam Lab custom hg19 archived low read length ENCFF000VQQ fastq fastq reads ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_2 36 single-ended 886946969 Peggy Farnham, USC d29733bf4bf98e7db21e96bddb6877ee SRA:SRR10049452 https://www.encodeproject.org/files/ENCFF000VQQ/@@download/ENCFF000VQQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/a9e4ea5d-8ea8-4e7d-aa5b-c401e93f717c/ENCFF000VQQ.fastq.gz low read length ENCFF969QSH bam bam unfiltered alignments GRCh38 ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1, 1_2 36 /files/ENCFF000VQO/, /files/ENCFF643CGH/, /files/ENCFF000VQQ/ 2175517411 ENCODE Processing Pipeline 8e79ab8ed510cfbbc1c36cab0a35f035 https://www.encodeproject.org/files/ENCFF969QSH/@@download/ENCFF969QSH.bam released s3://encode-public/2016/08/09/6d178701-5ceb-427c-a9da-439989476f9a/ENCFF969QSH.bam ENCODE3 GRCh38 archived low read length ENCFF887QKP bam bam alignments GRCh38 ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1, 1_2 36 /files/ENCFF000VQO/, /files/ENCFF643CGH/, /files/ENCFF000VQQ/ 1316422277 ENCODE Processing Pipeline aa311a284850764b7c48b7516e0176a1 https://www.encodeproject.org/files/ENCFF887QKP/@@download/ENCFF887QKP.bam released s3://encode-public/2016/08/09/a0fe0bd1-8b2b-4cf1-9277-10909eb1a4cb/ENCFF887QKP.bam ENCODE3 GRCh38 archived low read length ENCFF713WWI bam bam unfiltered alignments hg19 ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1, 1_2 36 /files/ENCFF000VQO/, /files/ENCFF807MUK/, /files/ENCFF000VQQ/ 2159508535 ENCODE Processing Pipeline 80eb7cd14c672711c95a0e50eeba5dba https://www.encodeproject.org/files/ENCFF713WWI/@@download/ENCFF713WWI.bam released s3://encode-public/2016/11/13/f4af5d25-5081-4afb-b807-ba28e688d4d4/ENCFF713WWI.bam ENCODE3 hg19 archived low read length ENCFF295UCD bam bam alignments hg19 ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1, 1_2 36 /files/ENCFF000VQO/, /files/ENCFF807MUK/, /files/ENCFF000VQQ/ 1315440512 ENCODE Processing Pipeline df3853cd5a08fc884aefd09cb2467d07 https://www.encodeproject.org/files/ENCFF295UCD/@@download/ENCFF295UCD.bam released s3://encode-public/2016/11/13/89f2a00f-22fc-4473-8c0a-2bb8bd1eb89a/ENCFF295UCD.bam ENCODE3 hg19 archived low read length ENCFF747BEZ bam bam unfiltered alignments GRCh38 ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF000VQO/, /files/ENCFF000VQQ/ 2094912224 ENCODE Processing Pipeline 93996a9abc803c3f38e1ddafb96cfb53 https://www.encodeproject.org/files/ENCFF747BEZ/@@download/ENCFF747BEZ.bam released s3://encode-public/2020/09/03/81e79105-cb2f-4f3a-a1c9-1ea2a7347567/ENCFF747BEZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF992GQT bam bam alignments GRCh38 ENCSR000EUH Control ChIP-seq /human-donors/ENCDO000ABH/ EFO:0005333 GM08714 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF000VQO/, /files/ENCFF000VQQ/ 1506889874 ENCODE Processing Pipeline 70309d791a3b9880f3342071cb2de147 https://www.encodeproject.org/files/ENCFF992GQT/@@download/ENCFF992GQT.bam released s3://encode-public/2020/09/03/a1a66c9c-526a-4943-9beb-a80ab1c93c37/ENCFF992GQT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF669PIA fastq fastq reads ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 460772195 Tim Reddy, Duke 18cd5f6c1df32db3db749d3d546caae6 SRA:SRR5093106 https://www.encodeproject.org/files/ENCFF669PIA/@@download/ENCFF669PIA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/4e45693a-2100-4130-a637-fb91f209b0f5/ENCFF669PIA.fastq.gz ENCFF569GYV fastq fastq reads ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 559808760 Tim Reddy, Duke 1aa18e9c961437d66e30fa84657acf06 SRA:SRR5093105 https://www.encodeproject.org/files/ENCFF569GYV/@@download/ENCFF569GYV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/24d833e4-e511-4298-acc0-af1e36d47f18/ENCFF569GYV.fastq.gz ENCFF690DWP fastq fastq reads ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 615086092 Tim Reddy, Duke 89281a502ec9ede6e2bdf1e320c25ee9 SRA:SRR5093107 https://www.encodeproject.org/files/ENCFF690DWP/@@download/ENCFF690DWP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/05b58ca9-8cf1-4286-8503-fa9d1091c493/ENCFF690DWP.fastq.gz ENCFF135XUJ bam bam alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF669PIA/ 522820065 Tim Reddy, Duke 4e657187a54598ecd31f6377d1ce66bd https://www.encodeproject.org/files/ENCFF135XUJ/@@download/ENCFF135XUJ.bam released s3://encode-public/2016/10/19/cf9b5c7a-3e8c-44af-b143-fb043a7c7722/ENCFF135XUJ.bam Lab custom GRCh38 archived ENCFF985GWF bam bam alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF690DWP/ 669556574 Tim Reddy, Duke 83efc55af4a3c647dab894e2203d8cae https://www.encodeproject.org/files/ENCFF985GWF/@@download/ENCFF985GWF.bam released s3://encode-public/2016/10/19/c19daac3-d151-4ac6-99e2-987a5b87aa08/ENCFF985GWF.bam Lab custom GRCh38 archived ENCFF595DRH bam bam alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF569GYV/ 618986110 Tim Reddy, Duke f8650142125d3a2c5baee5e46beffd28 https://www.encodeproject.org/files/ENCFF595DRH/@@download/ENCFF595DRH.bam released s3://encode-public/2016/10/19/1a51ffda-cbcd-4be4-a4d2-6dff0db04825/ENCFF595DRH.bam Lab custom GRCh38 archived ENCFF597ZML bam bam unfiltered alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF690DWP/ 828707275 ENCODE Processing Pipeline 57c471a6025451c07575904536495625 https://www.encodeproject.org/files/ENCFF597ZML/@@download/ENCFF597ZML.bam released s3://encode-public/2020/11/13/b5bfe209-abd8-4dd3-86bd-6649a59b50de/ENCFF597ZML.bam ENCODE4 v1.6.1 GRCh38 released ENCFF487OYH bam bam unfiltered alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF569GYV/ 760224166 ENCODE Processing Pipeline 8e02f4e0d8ab317a3ded135b424ec5af https://www.encodeproject.org/files/ENCFF487OYH/@@download/ENCFF487OYH.bam released s3://encode-public/2020/11/13/83a06afa-c059-43d8-a35d-370de084dc52/ENCFF487OYH.bam ENCODE4 v1.6.1 GRCh38 released ENCFF092NVK bam bam alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF669PIA/ 537029830 ENCODE Processing Pipeline 5ab892b3aabeede37b58835e4d4994fe https://www.encodeproject.org/files/ENCFF092NVK/@@download/ENCFF092NVK.bam released s3://encode-public/2020/11/13/eb320457-796a-4ed7-b063-b8e1d78e4ea2/ENCFF092NVK.bam ENCODE4 v1.6.1 GRCh38 released ENCFF528QVG bam bam alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF569GYV/ 646948685 ENCODE Processing Pipeline 1583de4b7258cff8e83c14a5584ec04f https://www.encodeproject.org/files/ENCFF528QVG/@@download/ENCFF528QVG.bam released s3://encode-public/2020/11/13/eda15a20-6100-4722-b3dd-871f80901cff/ENCFF528QVG.bam ENCODE4 v1.6.1 GRCh38 released ENCFF388ULM bam bam alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF690DWP/ 700116268 ENCODE Processing Pipeline 219e8a6b1f1ec0caf1c7ef13cccd9a50 https://www.encodeproject.org/files/ENCFF388ULM/@@download/ENCFF388ULM.bam released s3://encode-public/2020/11/13/77de33bc-312a-47bf-a300-7afe2e850645/ENCFF388ULM.bam ENCODE4 v1.6.1 GRCh38 released ENCFF120PUY bam bam unfiltered alignments GRCh38 ENCSR730UDX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF669PIA/ 655879073 ENCODE Processing Pipeline 4d98a6bd13a269bec18407c45076649b https://www.encodeproject.org/files/ENCFF120PUY/@@download/ENCFF120PUY.bam released s3://encode-public/2020/11/13/3f2efb58-fc61-4a44-bfca-85bd46597933/ENCFF120PUY.bam ENCODE4 v1.6.1 GRCh38 released ENCFF739WNM bam bam redacted unfiltered alignments GRCh38 ENCSR211LEQ Control ChIP-seq /human-donors/ENCDO654YBK/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF565IJW/, /files/ENCFF643CGH/ 652678782 ENCODE Processing Pipeline 2b3a64feb5930914da6aaa5b406d9e10 https://www.encodeproject.org/files/ENCFF739WNM/@@download/ENCFF739WNM.bam released s3://encode-public/2018/01/18/1ffe5318-d145-4dc3-9328-b88f18160ecd/ENCFF739WNM.bam ENCODE3 GRCh38 archived low read length ENCFF118AQB bam bam redacted alignments GRCh38 ENCSR211LEQ Control ChIP-seq /human-donors/ENCDO654YBK/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF565IJW/, /files/ENCFF643CGH/ 428118156 ENCODE Processing Pipeline 02ef880b94bb07b05f891b7a09bc5c27 https://www.encodeproject.org/files/ENCFF118AQB/@@download/ENCFF118AQB.bam released s3://encode-public/2018/01/18/de725395-38c9-4191-a347-0202835681a9/ENCFF118AQB.bam ENCODE3 GRCh38 archived low read length ENCFF604SAD bam bam redacted alignments hg19 ENCSR211LEQ Control ChIP-seq /human-donors/ENCDO654YBK/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF565IJW/, /files/ENCFF807MUK/ 428051754 ENCODE Processing Pipeline 28085c22bfcc1442210e4ce21658f76e https://www.encodeproject.org/files/ENCFF604SAD/@@download/ENCFF604SAD.bam released s3://encode-public/2018/01/19/d510dcd1-ac94-4565-8f46-05779fca1d30/ENCFF604SAD.bam ENCODE3 hg19 archived low read length ENCFF058IOD bam bam redacted unfiltered alignments hg19 ENCSR211LEQ Control ChIP-seq /human-donors/ENCDO654YBK/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF565IJW/, /files/ENCFF807MUK/ 645143639 ENCODE Processing Pipeline f87ba05a42e2f09328ba6499f25eba86 https://www.encodeproject.org/files/ENCFF058IOD/@@download/ENCFF058IOD.bam released s3://encode-public/2018/01/19/64a17bdb-179b-43b3-87fe-edb3ae75930a/ENCFF058IOD.bam ENCODE3 hg19 archived low read length ENCFF846IOH bam bam redacted alignments GRCh38 ENCSR211LEQ Control ChIP-seq /human-donors/ENCDO654YBK/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF565IJW/ 1479602000 ENCODE Processing Pipeline 217ea02b26d979590241eb3a98f0f289 https://www.encodeproject.org/files/ENCFF846IOH/@@download/ENCFF846IOH.bam released s3://encode-public/2021/01/27/23473a2d-b3b3-4e19-9534-d6c6bcaadd9f/ENCFF846IOH.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF674GBO bam bam alignments mm10-minimal ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF554GAJ/ 1952028024 ENCODE Processing Pipeline 512beb6fd3108512800a6fc42f3a3632 https://www.encodeproject.org/files/ENCFF674GBO/@@download/ENCFF674GBO.bam archived s3://encode-public/2015/06/24/dc74158b-6c62-4e24-9f2c-f2ad80f43d6a/ENCFF674GBO.bam ENCFF541RVC bam bam alignments mm10-minimal ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF333CMN/ 1983918846 ENCODE Processing Pipeline 01f2d313bdc3e4037088cd5cff4b4bf8 https://www.encodeproject.org/files/ENCFF541RVC/@@download/ENCFF541RVC.bam archived s3://encode-public/2015/06/24/dfd9f000-4b6d-45a0-adcf-d0aa7a1a55ff/ENCFF541RVC.bam ENCFF554GAJ fastq fastq reads ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2344019321 Bing Ren, UCSD 6f87b72150be23d316b320ebe8f29b25 SRA:SRR3651950 https://www.encodeproject.org/files/ENCFF554GAJ/@@download/ENCFF554GAJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/17a5f22b-ea49-4875-ab92-82d1a5c2f690/ENCFF554GAJ.fastq.gz ENCFF333CMN fastq fastq reads ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2393503767 Bing Ren, UCSD cbe931220ac428418eb780727052ad51 SRA:SRR3651952 https://www.encodeproject.org/files/ENCFF333CMN/@@download/ENCFF333CMN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/30c80770-14e6-4159-b176-e950970f806c/ENCFF333CMN.fastq.gz ENCFF444LBW fastq fastq reads ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 646987306 Bing Ren, UCSD 57dc0764848eec4660ad359181b1a039 SRA:SRR3651953 https://www.encodeproject.org/files/ENCFF444LBW/@@download/ENCFF444LBW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/622e9a28-1902-4e74-b49f-c0426e738054/ENCFF444LBW.fastq.gz ENCFF007ZYG fastq fastq reads ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 773282310 Bing Ren, UCSD 1eff060a3bf1b498901b34be557793b9 SRA:SRR3651951 https://www.encodeproject.org/files/ENCFF007ZYG/@@download/ENCFF007ZYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/9be6a11f-0f62-4e97-a254-d215756124d1/ENCFF007ZYG.fastq.gz ENCFF561HVM bam bam alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF333CMN/, /files/ENCFF444LBW/ 2661159679 ENCODE Processing Pipeline 4342e3381cc83ca4d94457cd197868e8 https://www.encodeproject.org/files/ENCFF561HVM/@@download/ENCFF561HVM.bam released s3://encode-public/2016/07/18/186a4c43-314d-4353-9221-4cb9f511667a/ENCFF561HVM.bam ENCODE3 mm10 archived ENCFF481KHX bam bam unfiltered alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF333CMN/, /files/ENCFF444LBW/ 3904072321 ENCODE Processing Pipeline 35a4be3f28954c3eb8e7fd90d3564d03 https://www.encodeproject.org/files/ENCFF481KHX/@@download/ENCFF481KHX.bam released s3://encode-public/2016/07/18/6c3c63f6-20a4-496b-afc9-8f2187ef9e3f/ENCFF481KHX.bam ENCODE3 mm10 archived ENCFF962XXR bam bam alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF554GAJ/, /files/ENCFF007ZYG/ 2750497632 ENCODE Processing Pipeline dc762894d8996c9001e6785930323c07 https://www.encodeproject.org/files/ENCFF962XXR/@@download/ENCFF962XXR.bam released s3://encode-public/2016/07/18/ca3d6d8f-d057-438d-8fd3-3978c735091f/ENCFF962XXR.bam ENCODE3 mm10 archived ENCFF228UEX bam bam unfiltered alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF554GAJ/, /files/ENCFF007ZYG/ 4022582585 ENCODE Processing Pipeline ad8087364cbb180f79fddcbd0fa369c3 https://www.encodeproject.org/files/ENCFF228UEX/@@download/ENCFF228UEX.bam released s3://encode-public/2016/07/18/21c71b7b-bb8e-441a-98be-90c36bc9cb6a/ENCFF228UEX.bam ENCODE3 mm10 archived ENCFF665VCL bam bam unfiltered alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF554GAJ/, /files/ENCFF309GLL/, /files/ENCFF007ZYG/ 3915401338 ENCODE Processing Pipeline 111c8d76a8c86fc664603c724e6f5691 https://www.encodeproject.org/files/ENCFF665VCL/@@download/ENCFF665VCL.bam released s3://encode-public/2020/10/08/66dcaf72-d323-44f9-b042-aaf1a88f39f9/ENCFF665VCL.bam ENCODE4 v1.5.1 mm10 released ENCFF677OZB bam bam alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF554GAJ/, /files/ENCFF309GLL/, /files/ENCFF007ZYG/ 2833749873 ENCODE Processing Pipeline 2584efa9faf85f7225a4b74f96a1d0c9 https://www.encodeproject.org/files/ENCFF677OZB/@@download/ENCFF677OZB.bam released s3://encode-public/2020/10/08/5d68ba0b-7868-431f-9b85-a29c64b147c2/ENCFF677OZB.bam ENCODE4 v1.5.1 mm10 released ENCFF732VTL bam bam unfiltered alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF444LBW/, /files/ENCFF309GLL/, /files/ENCFF333CMN/ 3803741744 ENCODE Processing Pipeline d9719789c0560f86f9dcc413926d585b https://www.encodeproject.org/files/ENCFF732VTL/@@download/ENCFF732VTL.bam released s3://encode-public/2020/10/08/35e979b5-b376-4bf2-8127-87f12317d30f/ENCFF732VTL.bam ENCODE4 v1.5.1 mm10 released ENCFF803WLL bam bam alignments mm10 ENCSR359ETU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF444LBW/, /files/ENCFF309GLL/, /files/ENCFF333CMN/ 2741364501 ENCODE Processing Pipeline 34dee82a4fc8c12f5a5ecf677d9b2b3a https://www.encodeproject.org/files/ENCFF803WLL/@@download/ENCFF803WLL.bam released s3://encode-public/2020/10/08/052754d9-b883-4ce9-b47f-2535a3cedb3d/ENCFF803WLL.bam ENCODE4 v1.5.1 mm10 released ENCFF124NIG fastq fastq reads ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 714023616 Tim Reddy, Duke 7d69d976e8307910aaeabde026e91d0c SRA:SRR5093018 https://www.encodeproject.org/files/ENCFF124NIG/@@download/ENCFF124NIG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/dc08dbd8-2178-4332-8bcc-6dd52e6be82d/ENCFF124NIG.fastq.gz ENCFF073ZEF fastq fastq reads ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 577897420 Tim Reddy, Duke 4bd48bc7c3196f9b837be8e656d41e3e SRA:SRR5093016 https://www.encodeproject.org/files/ENCFF073ZEF/@@download/ENCFF073ZEF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/38d09aa5-73cc-4a73-bd9a-79f1633f9507/ENCFF073ZEF.fastq.gz ENCFF891OIF fastq fastq reads ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 587659021 Tim Reddy, Duke 04b5a4bb242bc7693bee678293cbe3e2 SRA:SRR5093017 https://www.encodeproject.org/files/ENCFF891OIF/@@download/ENCFF891OIF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/a7891e3c-2fe4-4147-840d-b9b9f552bcf6/ENCFF891OIF.fastq.gz ENCFF214UMU bam bam alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF124NIG/ 794338886 Tim Reddy, Duke 7a102c80191020435bf91e7b8c6bdb5a https://www.encodeproject.org/files/ENCFF214UMU/@@download/ENCFF214UMU.bam released s3://encode-public/2016/10/19/1b970b76-fcac-4f42-9c59-b8a6f530e6fb/ENCFF214UMU.bam Lab custom GRCh38 archived ENCFF773DUX bam bam alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF073ZEF/ 635746090 Tim Reddy, Duke de429a50c4c541ad63aaae1ee4fab04c https://www.encodeproject.org/files/ENCFF773DUX/@@download/ENCFF773DUX.bam released s3://encode-public/2016/10/19/29bac4a2-9f21-456c-b1df-02ef7c867b1f/ENCFF773DUX.bam Lab custom GRCh38 archived ENCFF408NFU bam bam alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF891OIF/ 591449818 Tim Reddy, Duke e15ed022d9a620fc5340ea7dbafecef5 https://www.encodeproject.org/files/ENCFF408NFU/@@download/ENCFF408NFU.bam released s3://encode-public/2016/10/19/9adfc3c2-2736-475f-ae00-7a9509107a58/ENCFF408NFU.bam Lab custom GRCh38 archived ENCFF392TXL bam bam unfiltered alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF073ZEF/ 793085265 ENCODE Processing Pipeline 5cb114188d01d86807c5914b6c74214b https://www.encodeproject.org/files/ENCFF392TXL/@@download/ENCFF392TXL.bam released s3://encode-public/2020/11/13/283e98b7-5ee5-4b00-9e4a-753a1604e434/ENCFF392TXL.bam ENCODE4 v1.6.1 GRCh38 released ENCFF809WQE bam bam alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF891OIF/ 618276308 ENCODE Processing Pipeline 0333ef149ea953e77be42fc18ba4eaf6 https://www.encodeproject.org/files/ENCFF809WQE/@@download/ENCFF809WQE.bam released s3://encode-public/2020/11/13/f3766508-e2de-45bc-81d1-eab14406f37b/ENCFF809WQE.bam ENCODE4 v1.6.1 GRCh38 released ENCFF523RID bam bam unfiltered alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF891OIF/ 761088929 ENCODE Processing Pipeline d3c4e22cd79d1fe2187680c78332cf64 https://www.encodeproject.org/files/ENCFF523RID/@@download/ENCFF523RID.bam released s3://encode-public/2020/11/13/47b515b5-dfed-49fd-a820-f31822c6a9b8/ENCFF523RID.bam ENCODE4 v1.6.1 GRCh38 released ENCFF308LCZ bam bam unfiltered alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF124NIG/ 976354032 ENCODE Processing Pipeline 3a9a72bb9030d4680352bb07d802768c https://www.encodeproject.org/files/ENCFF308LCZ/@@download/ENCFF308LCZ.bam released s3://encode-public/2020/11/13/1879f533-aefa-40b8-b056-5be978810985/ENCFF308LCZ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF580ITR bam bam alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF124NIG/ 828135322 ENCODE Processing Pipeline e6e1fa98ce56ed3fec3ab8f6b97bb2f3 https://www.encodeproject.org/files/ENCFF580ITR/@@download/ENCFF580ITR.bam released s3://encode-public/2020/11/13/1ca359ee-4e6c-4fca-8902-5559458c7b22/ENCFF580ITR.bam ENCODE4 v1.6.1 GRCh38 released ENCFF683XQP bam bam alignments GRCh38 ENCSR608QCS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF073ZEF/ 664321940 ENCODE Processing Pipeline cd417b6d08d5721a54c107e169278ce1 https://www.encodeproject.org/files/ENCFF683XQP/@@download/ENCFF683XQP.bam released s3://encode-public/2020/11/13/bf153c8b-2788-468b-84e0-e4d44311c3d8/ENCFF683XQP.bam ENCODE4 v1.6.1 GRCh38 released ENCFF735VPV fastq fastq reads ENCSR942LEY Control ChIP-seq /fly-donors/ENCDO683REK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39428/'], '@type': ['Target', 'Item'], 'name': 'CG10654-dmelanogaster', 'label': 'CG10654', '@id': '/targets/CG10654-dmelanogaster/', 'title': 'CG10654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fac411e2-5f7c-49e5-950b-b0b40bfa9c96', 'status': 'released'} dm3 3L 12489986 12513457 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1160847728 Kevin White, UChicago f18c5f1ec875d6b55e2920d2d15d4e7a https://www.encodeproject.org/files/ENCFF735VPV/@@download/ENCFF735VPV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/049493c6-1fe7-41be-85ed-124c5cbbb479/ENCFF735VPV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF481KZC bam bam alignments dm3 ENCSR942LEY Control ChIP-seq /fly-donors/ENCDO683REK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39428/'], '@type': ['Target', 'Item'], 'name': 'CG10654-dmelanogaster', 'label': 'CG10654', '@id': '/targets/CG10654-dmelanogaster/', 'title': 'CG10654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fac411e2-5f7c-49e5-950b-b0b40bfa9c96', 'status': 'released'} dm3 3L 12489986 12513457 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF735VPV/, /files/ENCFF059UHX/ 1408756972 Kevin White, UChicago 5b06bae6a6fe300c3f624e45204a3882 https://www.encodeproject.org/files/ENCFF481KZC/@@download/ENCFF481KZC.bam released s3://encode-public/2016/08/04/33867396-5a68-4b28-894d-aa88fd2c7af2/ENCFF481KZC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF103YBO bam bam alignments dm6 ENCSR942LEY Control ChIP-seq /fly-donors/ENCDO683REK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39428/'], '@type': ['Target', 'Item'], 'name': 'CG10654-dmelanogaster', 'label': 'CG10654', '@id': '/targets/CG10654-dmelanogaster/', 'title': 'CG10654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fac411e2-5f7c-49e5-950b-b0b40bfa9c96', 'status': 'released'} dm3 3L 12489986 12513457 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF735VPV/, /files/ENCFF479RCH/ 1403589043 Kevin White, UChicago e77be100b5eb9de0075a17b0d9d58961 https://www.encodeproject.org/files/ENCFF103YBO/@@download/ENCFF103YBO.bam released s3://encode-public/2016/08/04/e54d20de-84e8-4824-8321-ae24fa0a93de/ENCFF103YBO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF553HVH bigWig bigWig read-depth normalized signal dm3 ENCSR942LEY Control ChIP-seq /fly-donors/ENCDO683REK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39428/'], '@type': ['Target', 'Item'], 'name': 'CG10654-dmelanogaster', 'label': 'CG10654', '@id': '/targets/CG10654-dmelanogaster/', 'title': 'CG10654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fac411e2-5f7c-49e5-950b-b0b40bfa9c96', 'status': 'released'} dm3 3L 12489986 12513457 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF481KZC/ 15509787 Kevin White, UChicago 5d2b86dc254cda346813322d1c738889 https://www.encodeproject.org/files/ENCFF553HVH/@@download/ENCFF553HVH.bigWig released s3://encode-public/2016/08/04/eab79a78-7bce-4d4d-afcf-754f21fe4b9f/ENCFF553HVH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF314ELF bigWig bigWig signal of unique reads dm3 ENCSR942LEY Control ChIP-seq /fly-donors/ENCDO683REK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39428/'], '@type': ['Target', 'Item'], 'name': 'CG10654-dmelanogaster', 'label': 'CG10654', '@id': '/targets/CG10654-dmelanogaster/', 'title': 'CG10654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fac411e2-5f7c-49e5-950b-b0b40bfa9c96', 'status': 'released'} dm3 3L 12489986 12513457 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF481KZC/ 15446432 Kevin White, UChicago 7c6a865973207e5f028caea0b6e932d8 https://www.encodeproject.org/files/ENCFF314ELF/@@download/ENCFF314ELF.bigWig released s3://encode-public/2016/08/04/b85d9423-406d-44e4-b1b4-595d8c33fb03/ENCFF314ELF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF167SLH bigWig bigWig read-depth normalized signal dm6 ENCSR942LEY Control ChIP-seq /fly-donors/ENCDO683REK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39428/'], '@type': ['Target', 'Item'], 'name': 'CG10654-dmelanogaster', 'label': 'CG10654', '@id': '/targets/CG10654-dmelanogaster/', 'title': 'CG10654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fac411e2-5f7c-49e5-950b-b0b40bfa9c96', 'status': 'released'} dm3 3L 12489986 12513457 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF103YBO/ 17615605 Kevin White, UChicago 76effae709869d4d2f027fc38944ce7d https://www.encodeproject.org/files/ENCFF167SLH/@@download/ENCFF167SLH.bigWig released s3://encode-public/2016/08/04/d5f0eb55-14c8-4631-abe7-9f5eda9a44fe/ENCFF167SLH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF475RBB bigWig bigWig signal of unique reads dm6 ENCSR942LEY Control ChIP-seq /fly-donors/ENCDO683REK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39428/'], '@type': ['Target', 'Item'], 'name': 'CG10654-dmelanogaster', 'label': 'CG10654', '@id': '/targets/CG10654-dmelanogaster/', 'title': 'CG10654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fac411e2-5f7c-49e5-950b-b0b40bfa9c96', 'status': 'released'} dm3 3L 12489986 12513457 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF103YBO/ 17516384 Kevin White, UChicago 9f10856145aa1b916ba90c1e00efa426 https://www.encodeproject.org/files/ENCFF475RBB/@@download/ENCFF475RBB.bigWig released s3://encode-public/2016/08/04/80d3c4de-3279-415e-9c32-478f59ee60f2/ENCFF475RBB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000RLP fastq fastq reads ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 916600505 Richard Myers, HAIB b73a74e95889771423840251e8fad3ca https://www.encodeproject.org/files/ENCFF000RLP/@@download/ENCFF000RLP.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/01/23/f82d17ea-90ac-4ac5-b69c-7c01c1aa4c5f/ENCFF000RLP.fastq.gz low read depth, low read length ENCFF000RLU fastq fastq reads ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 1549270863 Richard Myers, HAIB 23d77de2f6e09e1480567deab6fea690 https://www.encodeproject.org/files/ENCFF000RLU/@@download/ENCFF000RLU.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/01/23/9006f382-3580-4001-aef5-edc086b6f461/ENCFF000RLU.fastq.gz low read depth, low read length ENCFF220JJW bam bam unfiltered alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RLP/, /files/ENCFF643CGH/ 1167732349 ENCODE Processing Pipeline 4e850d3e4db3912588e5fb4c3d8c06b5 https://www.encodeproject.org/files/ENCFF220JJW/@@download/ENCFF220JJW.bam released s3://encode-public/2016/10/26/baa46f6a-a1a5-4b3b-b592-ced5536f97fc/ENCFF220JJW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF177VIE bam bam unfiltered alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000RLU/ 2053864774 ENCODE Processing Pipeline 66fea790a83c46032f9d8d054285ed53 https://www.encodeproject.org/files/ENCFF177VIE/@@download/ENCFF177VIE.bam released s3://encode-public/2016/10/26/d935476b-4afb-484a-8309-ffcb1f638554/ENCFF177VIE.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF285OFZ bam bam alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RLP/, /files/ENCFF643CGH/ 702516695 ENCODE Processing Pipeline cda510887ca34c372b1a330749ccb942 https://www.encodeproject.org/files/ENCFF285OFZ/@@download/ENCFF285OFZ.bam released s3://encode-public/2016/10/26/76c93ebd-bb62-4d27-9ed3-7afc4c53fbe8/ENCFF285OFZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF371KBU bam bam alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000RLU/ 1441376087 ENCODE Processing Pipeline e62afa029f7e135059f276f8682aa035 https://www.encodeproject.org/files/ENCFF371KBU/@@download/ENCFF371KBU.bam released s3://encode-public/2016/10/26/633f9d06-27f9-46f1-80a2-837a57c18fb2/ENCFF371KBU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF184FTP bam bam unfiltered alignments hg19 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RLP/, /files/ENCFF807MUK/ 1165279301 ENCODE Processing Pipeline f87aa625ff3e2f6d189ab99879776eee https://www.encodeproject.org/files/ENCFF184FTP/@@download/ENCFF184FTP.bam released s3://encode-public/2016/11/13/6dc8ebfa-c856-4664-bb08-3c8d5d754f49/ENCFF184FTP.bam ENCODE3 hg19 archived low read depth, low read length ENCFF714KXC bam bam unfiltered alignments hg19 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000RLU/ 2046940634 ENCODE Processing Pipeline f5c1c3490d65cf7ca53aae352121b994 https://www.encodeproject.org/files/ENCFF714KXC/@@download/ENCFF714KXC.bam released s3://encode-public/2016/11/13/1fbd36ae-d453-4c19-bf3f-a8a59fa12d0c/ENCFF714KXC.bam ENCODE3 hg19 archived low read depth, low read length ENCFF827LXT bam bam alignments hg19 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RLP/, /files/ENCFF807MUK/ 702753282 ENCODE Processing Pipeline 195f994127bd2b58e38b77a3601d7e7c https://www.encodeproject.org/files/ENCFF827LXT/@@download/ENCFF827LXT.bam released s3://encode-public/2016/11/13/50ddf5e9-643d-4511-aa44-c0648bbda7ba/ENCFF827LXT.bam ENCODE3 hg19 archived low read depth, low read length ENCFF384MLX bam bam alignments hg19 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000RLU/ 1441627885 ENCODE Processing Pipeline b1d985d779158c3288d2c779785cba6f https://www.encodeproject.org/files/ENCFF384MLX/@@download/ENCFF384MLX.bam released s3://encode-public/2016/11/13/23eb3157-5817-4707-b7fb-173071f0941b/ENCFF384MLX.bam ENCODE3 hg19 archived low read depth, low read length ENCFF621FOA bam bam alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000RLP/ 770157477 ENCODE Processing Pipeline 83624f551b403aedd888d9ebf4207fb8 https://www.encodeproject.org/files/ENCFF621FOA/@@download/ENCFF621FOA.bam released s3://encode-public/2020/10/28/5e5d75da-171a-44f1-bc4e-5c2475342e7a/ENCFF621FOA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF447ENX bam bam unfiltered alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RLU/, /files/ENCFF110MCL/ 2010373143 ENCODE Processing Pipeline 8793acf353d94595600547d5e3c0727f https://www.encodeproject.org/files/ENCFF447ENX/@@download/ENCFF447ENX.bam released s3://encode-public/2020/10/28/a1418fb0-9b62-4ebd-8ba5-c9d8d0c0c39b/ENCFF447ENX.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF819WNT bam bam unfiltered alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000RLP/ 1147793298 ENCODE Processing Pipeline 66e29d6f93645921927406210bfc9954 https://www.encodeproject.org/files/ENCFF819WNT/@@download/ENCFF819WNT.bam released s3://encode-public/2020/10/28/22f33638-0c46-41eb-80ff-736e55807acb/ENCFF819WNT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF905JHN bam bam alignments GRCh38 ENCSR000BOC Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RLU/, /files/ENCFF110MCL/ 1551681237 ENCODE Processing Pipeline e22bc689e156b74e474b09909434a599 https://www.encodeproject.org/files/ENCFF905JHN/@@download/ENCFF905JHN.bam released s3://encode-public/2020/10/28/1a7ae257-8b5e-454a-aeb8-2e3057226fb0/ENCFF905JHN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF151KQH fastq fastq reads ENCSR637MGJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF224JZM/ 4709723631 Richard Myers, HAIB c254e09b193400011d513e9152aa6ec7 SRA:SRR6213384 https://www.encodeproject.org/files/ENCFF151KQH/@@download/ENCFF151KQH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/d6fe2849-0401-4479-8272-ba84777225c1/ENCFF151KQH.fastq.gz ENCFF224JZM fastq fastq reads ENCSR637MGJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF151KQH/ 4502971597 Richard Myers, HAIB 18c55c8e0d236461574b85f552a27b21 SRA:SRR6213384 https://www.encodeproject.org/files/ENCFF224JZM/@@download/ENCFF224JZM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/8ab3056f-670a-40f1-8b0f-be9de8752f77/ENCFF224JZM.fastq.gz ENCFF586DWA bam bam unfiltered alignments GRCh38 ENCSR637MGJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF151KQH/, /files/ENCFF643CGH/, /files/ENCFF224JZM/ 10652258450 ENCODE Processing Pipeline 420a89b5911aaa67fc1b301803ecafdd https://www.encodeproject.org/files/ENCFF586DWA/@@download/ENCFF586DWA.bam released s3://encode-public/2016/11/08/0503040a-13e0-41a0-bbbc-17c9cc292b6a/ENCFF586DWA.bam ENCODE3 GRCh38 archived ENCFF548LAU bam bam unfiltered alignments hg19 ENCSR637MGJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF151KQH/, /files/ENCFF807MUK/, /files/ENCFF224JZM/ 10609580585 ENCODE Processing Pipeline 70b0c947b3fb9c3046d81714a808b909 https://www.encodeproject.org/files/ENCFF548LAU/@@download/ENCFF548LAU.bam released s3://encode-public/2016/11/08/6694e8e7-38ca-40c9-a52e-b307390489cb/ENCFF548LAU.bam ENCODE3 hg19 archived ENCFF410CDQ bam bam alignments GRCh38 ENCSR637MGJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF151KQH/, /files/ENCFF643CGH/, /files/ENCFF224JZM/ 7340010105 ENCODE Processing Pipeline 63b089ea08ef5202fc2c0eda3a8df151 https://www.encodeproject.org/files/ENCFF410CDQ/@@download/ENCFF410CDQ.bam released s3://encode-public/2016/11/08/872c078d-4c1f-48aa-a750-d398bcd8e2af/ENCFF410CDQ.bam ENCODE3 GRCh38 archived ENCFF375TRH bam bam alignments hg19 ENCSR637MGJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF151KQH/, /files/ENCFF807MUK/, /files/ENCFF224JZM/ 7327768972 ENCODE Processing Pipeline 0d31b21eb2c4b72912c333ed17e3f110 https://www.encodeproject.org/files/ENCFF375TRH/@@download/ENCFF375TRH.bam released s3://encode-public/2016/11/08/8f2d7e0e-6329-4345-8b88-6a95f52c5ad4/ENCFF375TRH.bam ENCODE3 hg19 archived ENCFF472HAE bam bam unfiltered alignments GRCh38 ENCSR637MGJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 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DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HWJ/ 970431594 John Stamatoyannopoulos, UW e8444f8d9672c4c50d3b87f175c9e68e https://www.encodeproject.org/files/ENCFF001HVY/@@download/ENCFF001HVY.bam archived s3://encode-public/2011/06/25/66caf6af-4789-4008-ba9c-ec4b273713fa/ENCFF001HVY.bam Lab custom hg19 archived low read length ENCFF001HVZ bigWig bigWig raw signal hg19 ENCSR000DXC Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 /files/ENCFF001HVY/ 195258016 John Stamatoyannopoulos, UW 15ab0afd65757fb4c58ba499de0c06f2 https://www.encodeproject.org/files/ENCFF001HVZ/@@download/ENCFF001HVZ.bigWig archived s3://encode-public/2011/06/25/2b855ec9-e4be-44a0-9713-dbf23985cb10/ENCFF001HVZ.bigWig Lab custom hg19 archived low read length ENCFF001HWJ fastq fastq reads ENCSR000DXC Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 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K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZVL/ 453876691 ENCODE Processing Pipeline 0764d9960e12a08437bb171aea24eff3 https://www.encodeproject.org/files/ENCFF778UJO/@@download/ENCFF778UJO.bam released s3://encode-public/2016/08/23/ec9103fd-3310-4eaf-963a-ee0ca266fa0f/ENCFF778UJO.bam ENCODE3 hg19 archived low read depth, low read length ENCFF544UHT bam bam unfiltered alignments GRCh38 ENCSR000DKH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZVL/ 636612613 ENCODE Processing Pipeline 0fcd653b3181b01dc9f92cb620faeeed https://www.encodeproject.org/files/ENCFF544UHT/@@download/ENCFF544UHT.bam released s3://encode-public/2020/10/27/a669d9d6-c6fc-41ff-ab3c-5c8f126e4fd3/ENCFF544UHT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF204QYP bam bam alignments GRCh38 ENCSR000DKH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZVL/ 499766781 ENCODE Processing Pipeline fa16eb0add69a89f3858915e2b055ccd https://www.encodeproject.org/files/ENCFF204QYP/@@download/ENCFF204QYP.bam released s3://encode-public/2020/10/27/07c8b233-b3d3-4202-b24e-2c3d13b3a608/ENCFF204QYP.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF102GDJ bam bam unfiltered alignments GRCh38 ENCSR000DKH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVI/, /files/ENCFF110MCL/ 865174610 ENCODE Processing Pipeline e90294c37a5b753cd0834816dbcb86d6 https://www.encodeproject.org/files/ENCFF102GDJ/@@download/ENCFF102GDJ.bam released s3://encode-public/2020/10/27/1009a943-b608-4d6a-8d35-c7db041b17a1/ENCFF102GDJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF668FKF bam bam alignments GRCh38 ENCSR000DKH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVI/, /files/ENCFF110MCL/ 662684161 ENCODE Processing Pipeline 9e92533e78c4c7ea0af573394f5ea244 https://www.encodeproject.org/files/ENCFF668FKF/@@download/ENCFF668FKF.bam released s3://encode-public/2020/10/27/29678c33-38cd-4fe7-8190-29bc6633e63a/ENCFF668FKF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF675PXP fastq fastq reads ENCSR044YAD Control ChIP-seq /fly-donors/ENCDO093MGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36811/'], '@type': ['Target', 'Item'], 'name': 'CG33017-dmelanogaster', 'label': 'CG33017', '@id': '/targets/CG33017-dmelanogaster/', 'title': 'CG33017 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '37eb9b9f-1e9b-4911-aef9-50f1ff057aae', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 668994206 Kevin White, UChicago 5847a46a5ce5fd4da9b9b25990164f88 https://www.encodeproject.org/files/ENCFF675PXP/@@download/ENCFF675PXP.fastq.gz Illumina HiSeq 4000 /files/ENCFF590HZD/ released s3://encode-public/2018/09/18/908949c0-8ea7-4f87-8eec-10395110466b/ENCFF675PXP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF898VIZ bam bam alignments dm6 ENCSR044YAD Control ChIP-seq /fly-donors/ENCDO093MGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 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modification characterization, missing biosample characterization ENCFF850SRR bigWig bigWig signal of unique reads dm6 ENCSR044YAD Control ChIP-seq /fly-donors/ENCDO093MGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36811/'], '@type': ['Target', 'Item'], 'name': 'CG33017-dmelanogaster', 'label': 'CG33017', '@id': '/targets/CG33017-dmelanogaster/', 'title': 'CG33017 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '37eb9b9f-1e9b-4911-aef9-50f1ff057aae', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF898VIZ/ 17542345 Kevin White, UChicago 4a22a6c9094163f53d0ea27013488dca https://www.encodeproject.org/files/ENCFF850SRR/@@download/ENCFF850SRR.bigWig released s3://encode-public/2018/09/19/4fd5fa96-4296-451c-81d4-e128b7f71793/ENCFF850SRR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF356ECZ bigWig bigWig read-depth normalized signal dm6 ENCSR044YAD Control ChIP-seq /fly-donors/ENCDO093MGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36811/'], '@type': ['Target', 'Item'], 'name': 'CG33017-dmelanogaster', 'label': 'CG33017', '@id': '/targets/CG33017-dmelanogaster/', 'title': 'CG33017 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '37eb9b9f-1e9b-4911-aef9-50f1ff057aae', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF898VIZ/ 17513907 Kevin White, UChicago 5304157c4f65abcf06e484f1e7113b61 https://www.encodeproject.org/files/ENCFF356ECZ/@@download/ENCFF356ECZ.bigWig released s3://encode-public/2018/09/19/e0642250-bdf1-44fe-8a9f-4a84e92d5b58/ENCFF356ECZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF202LZF tagAlign tagAlign alignments hg19 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF225BZG/ 64122003 Anshul Kundaje, Stanford 7c25e89c53cafe19ae066f7213b33d89 https://www.encodeproject.org/files/ENCFF202LZF/@@download/ENCFF202LZF.tagAlign.gz archived s3://encode-public/2016/03/30/b4b8d602-32d1-4a8a-85d3-9a18f8f67a18/ENCFF202LZF.tagAlign.gz Lab custom hg19 archived insufficient read depth ENCFF225BZG fastq fastq reads ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 single-ended 911616332 Zhiping Weng, UMass bb0df5653230a106a778334749064cea SRA:SRR1068433 https://www.encodeproject.org/files/ENCFF225BZG/@@download/ENCFF225BZG.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/19/e25b750e-03e5-41de-976e-9d3d5c3851d2/ENCFF225BZG.fastq.gz insufficient read depth ENCFF044VCS bam bam unfiltered alignments GRCh38 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF225BZG/ 590752259 ENCODE Processing Pipeline aee4861a23f03d3e60c3c0e31538fee8 https://www.encodeproject.org/files/ENCFF044VCS/@@download/ENCFF044VCS.bam released s3://encode-public/2017/02/04/0394162a-55f2-41b4-9bde-7f460318cd81/ENCFF044VCS.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF851GKZ bam bam alignments GRCh38 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF225BZG/ 412456284 ENCODE Processing Pipeline 581f5e0c989be3f70c6c91ae12e8a91a https://www.encodeproject.org/files/ENCFF851GKZ/@@download/ENCFF851GKZ.bam released s3://encode-public/2017/02/04/2e0bdb14-bc26-4a34-a9b5-20dc2b9e6d7c/ENCFF851GKZ.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF875SMI bam bam unfiltered alignments hg19 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF225BZG/ 588310210 ENCODE Processing Pipeline 72a3baee81c952f77c0fbfb00003726c https://www.encodeproject.org/files/ENCFF875SMI/@@download/ENCFF875SMI.bam released s3://encode-public/2017/02/04/10649d48-b134-4121-81a5-cd04c7003a42/ENCFF875SMI.bam ENCODE3 hg19 archived insufficient read depth ENCFF079UFW bam bam alignments hg19 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF225BZG/ 412516456 ENCODE Processing Pipeline 6fd7a8e70da7bdf69425e5bce69f8c13 https://www.encodeproject.org/files/ENCFF079UFW/@@download/ENCFF079UFW.bam released s3://encode-public/2017/02/04/835ceeb7-4200-4056-b637-8e262f3c5f35/ENCFF079UFW.bam ENCODE3 hg19 archived insufficient read depth ENCFF094QNK bam bam unfiltered alignments GRCh38 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF225BZG/, /files/ENCFF110MCL/ 1028256058 ENCODE Processing Pipeline 7bff1eda1c9e70dc62cb2962969d4091 https://www.encodeproject.org/files/ENCFF094QNK/@@download/ENCFF094QNK.bam released s3://encode-public/2020/11/13/9702831d-e142-40e4-9c92-cac231b0184a/ENCFF094QNK.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF926IYF bam bam alignments GRCh38 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF225BZG/, /files/ENCFF110MCL/ 719328604 ENCODE Processing Pipeline bb5249543406a4cf7d46dc6b0f1033d2 https://www.encodeproject.org/files/ENCFF926IYF/@@download/ENCFF926IYF.bam released s3://encode-public/2020/11/13/0367d00b-37e6-436b-8d30-52df5cafd19a/ENCFF926IYF.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF964XTS bam bam unfiltered alignments GRCh38 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF225BZG/ 576923770 ENCODE Processing Pipeline dd6c5e044973111f8b36fa09bd72fa70 https://www.encodeproject.org/files/ENCFF964XTS/@@download/ENCFF964XTS.bam released s3://encode-public/2020/12/09/73e7685f-2692-48e7-bf18-c960b6c06e2a/ENCFF964XTS.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF331PBH bam bam alignments GRCh38 ENCSR680EWY Control ChIP-seq /human-donors/ENCDO175XVW/ EFO:0007108 iPS-20b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF225BZG/ 447955144 ENCODE Processing Pipeline 949f793fb22decb029ab4fa51fb2e3ad https://www.encodeproject.org/files/ENCFF331PBH/@@download/ENCFF331PBH.bam released s3://encode-public/2020/12/09/bd203fba-ad17-4996-adbb-3bf047f7669a/ENCFF331PBH.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF043BUS fastq fastq reads ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF942ZHL/ 2579180543 Richard Myers, HAIB a88eee850c0b697089631aab05a1cfc1 SRA:SRR6212608 https://www.encodeproject.org/files/ENCFF043BUS/@@download/ENCFF043BUS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/6104f6b4-2677-4197-b52f-411ebdcb90b2/ENCFF043BUS.fastq.gz ENCFF942ZHL fastq fastq reads ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF043BUS/ 2643346262 Richard Myers, HAIB 43d4fb9a2e547568a72d460ddb84b2f5 SRA:SRR6212608 https://www.encodeproject.org/files/ENCFF942ZHL/@@download/ENCFF942ZHL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/12e9759b-4009-40ce-ba9d-67abb77c3b84/ENCFF942ZHL.fastq.gz ENCFF567TUG bam bam unfiltered alignments GRCh38 ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF942ZHL/, /files/ENCFF643CGH/, /files/ENCFF043BUS/ 6250178089 ENCODE Processing Pipeline bdd9f2197371bfd0f591fb5f02e6c77f https://www.encodeproject.org/files/ENCFF567TUG/@@download/ENCFF567TUG.bam released s3://encode-public/2016/11/08/7465eee7-3aa2-4d05-9edb-d190de2f62e4/ENCFF567TUG.bam ENCODE3 GRCh38 archived ENCFF082LJH bam bam unfiltered alignments hg19 ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF942ZHL/, /files/ENCFF807MUK/, /files/ENCFF043BUS/ 6223164336 ENCODE Processing Pipeline 0b199bbf62f8cd5a3a58db93ff2b69cc https://www.encodeproject.org/files/ENCFF082LJH/@@download/ENCFF082LJH.bam released s3://encode-public/2016/11/08/33e75446-0630-47f3-8284-c9a97db260db/ENCFF082LJH.bam ENCODE3 hg19 archived ENCFF136JMK bam bam alignments GRCh38 ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF942ZHL/, /files/ENCFF643CGH/, /files/ENCFF043BUS/ 4524214771 ENCODE Processing Pipeline a3b41cfa5d884c7bb0c21d80337eba9b https://www.encodeproject.org/files/ENCFF136JMK/@@download/ENCFF136JMK.bam released s3://encode-public/2016/11/08/86369e7e-b551-4647-b78a-2c63c5788451/ENCFF136JMK.bam ENCODE3 GRCh38 archived ENCFF567GSG bam bam alignments hg19 ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF942ZHL/, /files/ENCFF807MUK/, /files/ENCFF043BUS/ 4519400267 ENCODE Processing Pipeline 8970bddab83d82d317012e4de76e22a9 https://www.encodeproject.org/files/ENCFF567GSG/@@download/ENCFF567GSG.bam released s3://encode-public/2016/11/08/fe5fc759-fed4-4628-82cd-9e27c8d8c055/ENCFF567GSG.bam ENCODE3 hg19 archived ENCFF681FDN bam bam unfiltered alignments GRCh38 ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF942ZHL/, /files/ENCFF110MCL/, /files/ENCFF043BUS/ 6267316813 ENCODE Processing Pipeline f0c647aa6662f3a48f0a8656d1f5b896 https://www.encodeproject.org/files/ENCFF681FDN/@@download/ENCFF681FDN.bam released s3://encode-public/2020/10/28/765f2eaf-1c86-4a60-9c83-81d92333972e/ENCFF681FDN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF753RQJ bam bam alignments GRCh38 ENCSR088FBX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF942ZHL/, /files/ENCFF110MCL/, /files/ENCFF043BUS/ 4232589686 ENCODE Processing Pipeline f9612701e8690fd61b3a0900a2d22754 https://www.encodeproject.org/files/ENCFF753RQJ/@@download/ENCFF753RQJ.bam released s3://encode-public/2020/10/28/357a3ac0-6d46-47ca-8a49-aa5fb32053ae/ENCFF753RQJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF687OGN fastq fastq reads ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF319YKD/ 3936721288 Michael Snyder, Stanford fc7cc437d85367d891a7005124b8baf0 SRA:SRR6213666 https://www.encodeproject.org/files/ENCFF687OGN/@@download/ENCFF687OGN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/daa3de60-e152-4056-ac9d-dbe6c60427f2/ENCFF687OGN.fastq.gz ENCFF319YKD fastq fastq reads ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF687OGN/ 3847337598 Michael Snyder, Stanford 106e7fd02b002adba83dce60ef229c9f SRA:SRR6213666 https://www.encodeproject.org/files/ENCFF319YKD/@@download/ENCFF319YKD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/203cf079-ff79-4d3b-b334-3c1941f437d4/ENCFF319YKD.fastq.gz ENCFF073ZEZ bam bam unfiltered alignments GRCh38 ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF687OGN/, /files/ENCFF643CGH/, /files/ENCFF319YKD/ 7577525031 ENCODE Processing Pipeline 389cadfe151dec738a0722e24d23809b https://www.encodeproject.org/files/ENCFF073ZEZ/@@download/ENCFF073ZEZ.bam released s3://encode-public/2016/11/02/03437569-ac76-4f62-aec8-24c6635c3ad1/ENCFF073ZEZ.bam ENCODE3 GRCh38 archived ENCFF190KTK bam bam unfiltered alignments hg19 ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF687OGN/, /files/ENCFF807MUK/, /files/ENCFF319YKD/ 7566771835 ENCODE Processing Pipeline 425214f57c0191d4514fe06b4e7c1106 https://www.encodeproject.org/files/ENCFF190KTK/@@download/ENCFF190KTK.bam released s3://encode-public/2016/11/02/a9529727-51ec-4547-acbc-e18576ae6cbd/ENCFF190KTK.bam ENCODE3 hg19 archived ENCFF473HRH bam bam alignments hg19 ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF687OGN/, /files/ENCFF807MUK/, /files/ENCFF319YKD/ 5799470984 ENCODE Processing Pipeline 2b350e59b1c3f65c8a447f38fdf9d856 https://www.encodeproject.org/files/ENCFF473HRH/@@download/ENCFF473HRH.bam released s3://encode-public/2016/11/02/7d42d93f-c811-4a69-90df-5a271f60ae08/ENCFF473HRH.bam ENCODE3 hg19 archived ENCFF831EFP bam bam alignments GRCh38 ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF687OGN/, /files/ENCFF643CGH/, /files/ENCFF319YKD/ 5811404234 ENCODE Processing Pipeline e9e98597a8cd63afed83355e85f386c2 https://www.encodeproject.org/files/ENCFF831EFP/@@download/ENCFF831EFP.bam released s3://encode-public/2016/11/02/02b0747b-e6da-42fb-805f-762db8c1db9d/ENCFF831EFP.bam ENCODE3 GRCh38 archived ENCFF029PPM bam bam unfiltered alignments GRCh38 ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF319YKD/, /files/ENCFF687OGN/ 7594963403 ENCODE Processing Pipeline 8f5d68f733d7e09ce673e777be996887 https://www.encodeproject.org/files/ENCFF029PPM/@@download/ENCFF029PPM.bam released s3://encode-public/2020/06/02/1a8f678a-6633-4765-a5bf-d604fd75cc5f/ENCFF029PPM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF883FQV bam bam alignments GRCh38 ENCSR462SLN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF319YKD/, /files/ENCFF687OGN/ 5688993590 ENCODE Processing Pipeline cc900e5b06c660ca1bb7ad3c314a4ea4 https://www.encodeproject.org/files/ENCFF883FQV/@@download/ENCFF883FQV.bam released s3://encode-public/2020/06/02/73ef9faa-3567-41e7-8f3c-7b4ee7c8a5b7/ENCFF883FQV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF570BHN fastq fastq reads ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 33 single-ended 118786941 Kevin White, UChicago f07aa41625006eb0675226c72cc2a9da https://www.encodeproject.org/files/ENCFF570BHN/@@download/ENCFF570BHN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/ad2619f2-5177-41fe-8076-90ccdc34d6a3/ENCFF570BHN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF983IIO fastq fastq reads ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 33 single-ended 186315083 Kevin White, UChicago 5ff80b94145d2bf382461b4f349cae52 https://www.encodeproject.org/files/ENCFF983IIO/@@download/ENCFF983IIO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/00bab9fc-b8c2-43dc-86f0-16c7aaa0ef50/ENCFF983IIO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF473WWV fastq fastq reads ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 3 3_1 33 single-ended 152480994 Kevin White, UChicago 086502e80b10645b245f25d0b2a20100 https://www.encodeproject.org/files/ENCFF473WWV/@@download/ENCFF473WWV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/f5181173-c91c-45a5-9d2f-7eb4c853086a/ENCFF473WWV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF164UER bam bam alignments ce10 ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF987UMF/, /files/ENCFF983IIO/, /files/ENCFF570BHN/, /files/ENCFF473WWV/ 569615378 Kevin White, UChicago 8af0083f41cd1a1ec57a96c4069631bc https://www.encodeproject.org/files/ENCFF164UER/@@download/ENCFF164UER.bam released s3://encode-public/2017/10/30/4aa184d5-63a9-4767-93b8-97ade813c75a/ENCFF164UER.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF067QMQ bam bam alignments ce11 ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF586MOL/, /files/ENCFF983IIO/, /files/ENCFF570BHN/, /files/ENCFF473WWV/ 570146277 Kevin White, UChicago c3431e41793fa9634c8a5419ac7e0fce https://www.encodeproject.org/files/ENCFF067QMQ/@@download/ENCFF067QMQ.bam released s3://encode-public/2017/10/30/b04c253c-ce93-4359-b33b-1cfb01c304ed/ENCFF067QMQ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF103VHS bigWig bigWig signal of unique reads ce10 ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF164UER/ 10039168 Kevin White, UChicago 7011b218df6eba8ffde1ec3fd38e3a0f https://www.encodeproject.org/files/ENCFF103VHS/@@download/ENCFF103VHS.bigWig released s3://encode-public/2017/10/31/d047a957-4848-426d-9dca-e5b0e00fd6e5/ENCFF103VHS.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF251WGP bigWig bigWig read-depth normalized signal ce11 ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF067QMQ/ 10010334 Kevin White, UChicago fd25e1b1947e9cbe8d5bf4c4609202ab https://www.encodeproject.org/files/ENCFF251WGP/@@download/ENCFF251WGP.bigWig released s3://encode-public/2017/10/31/ed134469-f8c2-469f-9949-da322ef5b51f/ENCFF251WGP.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF817AII bigWig bigWig read-depth normalized signal ce10 ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF164UER/ 10025571 Kevin White, UChicago 7077b1fcc50d8daf235890538136343e https://www.encodeproject.org/files/ENCFF817AII/@@download/ENCFF817AII.bigWig released s3://encode-public/2017/10/31/d4327bc1-6229-470e-8858-9775b46f6aba/ENCFF817AII.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF702NRR bigWig bigWig signal of unique reads ce11 ENCSR573YEK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF067QMQ/ 10034541 Kevin White, UChicago eea906e94c9b719f88a58f7817eab9d2 https://www.encodeproject.org/files/ENCFF702NRR/@@download/ENCFF702NRR.bigWig released s3://encode-public/2017/10/31/2df4fb04-b1ea-4b43-a74a-c3d0f54abe4c/ENCFF702NRR.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF847RFH tagAlign tagAlign alignments hg19 ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF054AIM/, /files/ENCFF732BVW/, /files/ENCFF965SVG/, /files/ENCFF802ZZZ/ 192370611 Anshul Kundaje, Stanford da252d7bce9663a41b9c28e57c0e53ad https://www.encodeproject.org/files/ENCFF847RFH/@@download/ENCFF847RFH.tagAlign.gz archived s3://encode-public/2016/05/02/60490a1b-dd9f-44b2-80f0-bf7b77221b31/ENCFF847RFH.tagAlign.gz Lab custom hg19 archived low read length ENCFF802ZZZ fastq fastq reads ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 376420972 Zhiping Weng, UMass b61c559ec77d5045ad1dd88db313a2d9 SRA:SRR1067323 https://www.encodeproject.org/files/ENCFF802ZZZ/@@download/ENCFF802ZZZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/18aa0d36-2564-44e4-ac1b-a2fdebf8881a/ENCFF802ZZZ.fastq.gz low read length ENCFF965SVG fastq fastq reads ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 350643479 Zhiping Weng, UMass fc8800d9206f2cb7618a25ce7b73476f SRA:SRR1067125 https://www.encodeproject.org/files/ENCFF965SVG/@@download/ENCFF965SVG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/bbb8ecb3-ffb3-4660-991d-fefa6e9b4a9f/ENCFF965SVG.fastq.gz low read length ENCFF732BVW fastq fastq reads ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 366602974 Zhiping Weng, UMass 345f08b9b3a9b2542d6c00e205cc0d50 SRA:SRR1067327 https://www.encodeproject.org/files/ENCFF732BVW/@@download/ENCFF732BVW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/fbea795c-4fe7-4fb6-8f35-1dd753aff0bb/ENCFF732BVW.fastq.gz low read length ENCFF054AIM fastq fastq reads ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 368867287 Zhiping Weng, UMass 76557563e1a295d996fa7ee9c341fef8 SRA:SRR1067287 https://www.encodeproject.org/files/ENCFF054AIM/@@download/ENCFF054AIM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/ddb54655-9820-475f-9908-5b994271f958/ENCFF054AIM.fastq.gz low read length ENCFF591HPH bam bam unfiltered alignments GRCh38 ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF965SVG/, /files/ENCFF054AIM/, /files/ENCFF802ZZZ/, /files/ENCFF732BVW/, /files/ENCFF110MCL/ 1662215113 ENCODE Processing Pipeline 6fc197eb31f86c35550c6f7b65b3ab43 https://www.encodeproject.org/files/ENCFF591HPH/@@download/ENCFF591HPH.bam released s3://encode-public/2020/10/08/25160292-77a3-448a-b9f7-d6e4e5e8b3bc/ENCFF591HPH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF139EXL bam bam alignments GRCh38 ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF965SVG/, /files/ENCFF054AIM/, /files/ENCFF802ZZZ/, /files/ENCFF732BVW/, /files/ENCFF110MCL/ 1346032988 ENCODE Processing Pipeline 2527700c9a0df92e5249e5198cdc9f91 https://www.encodeproject.org/files/ENCFF139EXL/@@download/ENCFF139EXL.bam released s3://encode-public/2020/10/08/ef9f3f63-7bd4-4792-8cb7-f17c4200eefb/ENCFF139EXL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF815XJQ bam bam unfiltered alignments hg19 ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF732BVW/, /files/ENCFF054AIM/, /files/ENCFF807MUK/, /files/ENCFF965SVG/, /files/ENCFF802ZZZ/ 1701195760 ENCODE Processing Pipeline eb6f87b58e58dc270a9d2979dec45aed https://www.encodeproject.org/files/ENCFF815XJQ/@@download/ENCFF815XJQ.bam released s3://encode-public/2016/12/19/dc9fa6be-d98f-4c27-b593-5e521cf6de83/ENCFF815XJQ.bam ENCODE3 hg19 archived low read length ENCFF564VUW bam bam unfiltered alignments GRCh38 ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF732BVW/, /files/ENCFF054AIM/, /files/ENCFF643CGH/, /files/ENCFF965SVG/, /files/ENCFF802ZZZ/ 1711942690 ENCODE Processing Pipeline ab6f5f63e32515440b541927bbb54a39 https://www.encodeproject.org/files/ENCFF564VUW/@@download/ENCFF564VUW.bam released s3://encode-public/2016/12/19/26c2ee5d-92fb-494b-8344-c5c5fb09308b/ENCFF564VUW.bam ENCODE3 GRCh38 archived low read length ENCFF069BVD bam bam alignments hg19 ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF732BVW/, /files/ENCFF054AIM/, /files/ENCFF807MUK/, /files/ENCFF965SVG/, /files/ENCFF802ZZZ/ 1245160028 ENCODE Processing Pipeline de42f93ed00384fd4ba89db8e640b5cf https://www.encodeproject.org/files/ENCFF069BVD/@@download/ENCFF069BVD.bam released s3://encode-public/2016/12/19/6627e01e-0cbf-439a-83ec-e22b972c9a5b/ENCFF069BVD.bam ENCODE3 hg19 archived low read length ENCFF984QHD bam bam alignments GRCh38 ENCSR580WGM Control ChIP-seq /human-donors/ENCDO844VGJ/ EFO:0007105 iPS-18a cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF732BVW/, /files/ENCFF054AIM/, /files/ENCFF643CGH/, /files/ENCFF965SVG/, /files/ENCFF802ZZZ/ 1245085049 ENCODE Processing Pipeline ff72b38980322d59162dc816ae054317 https://www.encodeproject.org/files/ENCFF984QHD/@@download/ENCFF984QHD.bam released s3://encode-public/2016/12/19/7fca851b-cec1-41fe-b72b-47d1e5d60d9f/ENCFF984QHD.bam ENCODE3 GRCh38 archived low read length ENCFF751XKV fastq fastq reads ENCSR171ADY Control ChIP-seq /fly-donors/ENCDO336XKV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38880/'], '@type': ['Target', 'Item'], 'name': 'CG8281-dmelanogaster', 'label': 'CG8281', '@id': '/targets/CG8281-dmelanogaster/', 'title': 'CG8281 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1dd4f1bc-ee04-4e47-8ca8-ec4aff2c990c', 'status': 'released'} dm3 3L 7895035 7914939 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 918017502 Kevin White, UChicago 06e2bb69af5c8b860ea6623e84f0eff2 https://www.encodeproject.org/files/ENCFF751XKV/@@download/ENCFF751XKV.fastq.gz Illumina HiSeq 4000 /files/ENCFF885QLQ/ released s3://encode-public/2018/09/18/43bb414b-90f1-4fe3-891e-2bb0c4df64fa/ENCFF751XKV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF843EEI fastq fastq reads ENCSR171ADY Control ChIP-seq /fly-donors/ENCDO336XKV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38880/'], '@type': ['Target', 'Item'], 'name': 'CG8281-dmelanogaster', 'label': 'CG8281', '@id': '/targets/CG8281-dmelanogaster/', 'title': 'CG8281 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1dd4f1bc-ee04-4e47-8ca8-ec4aff2c990c', 'status': 'released'} dm3 3L 7895035 7914939 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 596734007 Kevin White, UChicago 6c1c3fd9b13f558fec0971c567c371a8 https://www.encodeproject.org/files/ENCFF843EEI/@@download/ENCFF843EEI.fastq.gz Illumina HiSeq 4000 /files/ENCFF885QLQ/ released s3://encode-public/2018/09/18/b01aac22-2057-42a1-a7ce-f851c78e5a23/ENCFF843EEI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF116TZF bam bam alignments dm6 ENCSR171ADY Control ChIP-seq /fly-donors/ENCDO336XKV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38880/'], '@type': ['Target', 'Item'], 'name': 'CG8281-dmelanogaster', 'label': 'CG8281', '@id': '/targets/CG8281-dmelanogaster/', 'title': 'CG8281 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1dd4f1bc-ee04-4e47-8ca8-ec4aff2c990c', 'status': 'released'} dm3 3L 7895035 7914939 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF843EEI/, /files/ENCFF751XKV/, /files/ENCFF479RCH/ 2008739178 Kevin White, UChicago 27dffc96ab0c82ef0dd2f2f5def07ad9 https://www.encodeproject.org/files/ENCFF116TZF/@@download/ENCFF116TZF.bam released s3://encode-public/2018/09/19/701e1ebf-a7f4-41a0-94cd-ae77e45d4ebf/ENCFF116TZF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF953FKF bigWig bigWig signal of unique reads dm6 ENCSR171ADY Control ChIP-seq /fly-donors/ENCDO336XKV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38880/'], '@type': ['Target', 'Item'], 'name': 'CG8281-dmelanogaster', 'label': 'CG8281', '@id': '/targets/CG8281-dmelanogaster/', 'title': 'CG8281 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1dd4f1bc-ee04-4e47-8ca8-ec4aff2c990c', 'status': 'released'} dm3 3L 7895035 7914939 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF116TZF/ 17794264 Kevin White, UChicago 027890b11c5b7bddc668208411542bc7 https://www.encodeproject.org/files/ENCFF953FKF/@@download/ENCFF953FKF.bigWig released s3://encode-public/2018/09/19/862330ae-81a1-4f7f-9232-2d59e67c5e59/ENCFF953FKF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF452BPD bigWig bigWig read-depth normalized signal dm6 ENCSR171ADY Control ChIP-seq /fly-donors/ENCDO336XKV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38880/'], '@type': ['Target', 'Item'], 'name': 'CG8281-dmelanogaster', 'label': 'CG8281', '@id': '/targets/CG8281-dmelanogaster/', 'title': 'CG8281 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1dd4f1bc-ee04-4e47-8ca8-ec4aff2c990c', 'status': 'released'} dm3 3L 7895035 7914939 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF116TZF/ 17740990 Kevin White, UChicago 80ea37ddca6f6f0ac485de0fc78564eb https://www.encodeproject.org/files/ENCFF452BPD/@@download/ENCFF452BPD.bigWig released s3://encode-public/2018/09/19/13ff1c5a-020b-44dd-aa96-655e954decfb/ENCFF452BPD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF988WRI tagAlign tagAlign alignments hg19 ENCSR942ZRO Control ChIP-seq /human-donors/ENCDO232KQV/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF249BAJ/ 193399764 Anshul Kundaje, Stanford f27e30ed4490b8a00ed111f1f5fb1e43 https://www.encodeproject.org/files/ENCFF988WRI/@@download/ENCFF988WRI.tagAlign.gz archived s3://encode-public/2016/03/30/9d199311-2488-4c40-b501-1a8083c9275f/ENCFF988WRI.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF099NOH bam bam redacted unfiltered alignments GRCh38 ENCSR942ZRO Control ChIP-seq /human-donors/ENCDO232KQV/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF249BAJ/, /files/ENCFF643CGH/ 636493685 ENCODE Processing Pipeline fc417554dae6b63d2c6d5c39e222ee82 https://www.encodeproject.org/files/ENCFF099NOH/@@download/ENCFF099NOH.bam released s3://encode-public/2018/01/18/73ec03c8-489c-4224-9309-194c2988dc39/ENCFF099NOH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF801JLQ bam bam redacted alignments GRCh38 ENCSR942ZRO Control ChIP-seq /human-donors/ENCDO232KQV/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF249BAJ/, /files/ENCFF643CGH/ 371590155 ENCODE Processing Pipeline 73a183851bace3535706e81da38407ba https://www.encodeproject.org/files/ENCFF801JLQ/@@download/ENCFF801JLQ.bam released s3://encode-public/2018/01/18/8a82a6ec-92da-4e00-90fb-e188c7658088/ENCFF801JLQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF099VJX bam bam redacted unfiltered alignments hg19 ENCSR942ZRO Control ChIP-seq /human-donors/ENCDO232KQV/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF249BAJ/, /files/ENCFF807MUK/ 630228478 ENCODE Processing Pipeline dde02acdc80ba36c134c817fa7946163 https://www.encodeproject.org/files/ENCFF099VJX/@@download/ENCFF099VJX.bam released s3://encode-public/2018/01/19/5b8814d9-22b8-4454-a629-41b03627b73a/ENCFF099VJX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF591ZBB bam bam redacted alignments hg19 ENCSR942ZRO Control ChIP-seq /human-donors/ENCDO232KQV/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF249BAJ/, /files/ENCFF807MUK/ 371610374 ENCODE Processing Pipeline e7ab74bb23e9afdc7d39b90c9575b963 https://www.encodeproject.org/files/ENCFF591ZBB/@@download/ENCFF591ZBB.bam released s3://encode-public/2018/01/19/5f5b99f0-7acc-4790-8b1f-64d9ecbc4d85/ENCFF591ZBB.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF824GPM bam bam redacted alignments GRCh38 ENCSR942ZRO Control ChIP-seq /human-donors/ENCDO232KQV/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF249BAJ/, /files/ENCFF110MCL/ 1159688415 ENCODE Processing Pipeline 19188b3cb97713930c2e469b618db4b3 https://www.encodeproject.org/files/ENCFF824GPM/@@download/ENCFF824GPM.bam released s3://encode-public/2021/01/27/3a459e7e-58d2-41fb-90a1-0a878c00041a/ENCFF824GPM.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length ENCFF013OUV bam bam unfiltered alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF593ZTF/, /files/ENCFF110MCL/ 1153688223 ENCODE Processing Pipeline 0ddae7fa162fb2029b4e0d121b8f57bf https://www.encodeproject.org/files/ENCFF013OUV/@@download/ENCFF013OUV.bam released s3://encode-public/2020/09/29/61311f5b-325f-4c21-be2f-0d9febbeeb2e/ENCFF013OUV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF433IDY bam bam alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF238JFM/ 989296413 ENCODE Processing Pipeline 9bb42a51c55428a35205bff653308413 https://www.encodeproject.org/files/ENCFF433IDY/@@download/ENCFF433IDY.bam released s3://encode-public/2020/09/29/e01b6328-40b8-4ee2-8dbb-feaa2c6e1518/ENCFF433IDY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF308BJC bam bam alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF347URC/, /files/ENCFF110MCL/ 542950029 ENCODE Processing Pipeline ab0d69abda514e9e774666cf2f6950b7 https://www.encodeproject.org/files/ENCFF308BJC/@@download/ENCFF308BJC.bam released s3://encode-public/2020/09/29/5e3a5322-a358-45e1-8e0f-229f8efbe600/ENCFF308BJC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF366YQT bam bam alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF593ZTF/, /files/ENCFF110MCL/ 981164265 ENCODE Processing Pipeline cc345cc3a0d49defe0dbd2f0dadddbba https://www.encodeproject.org/files/ENCFF366YQT/@@download/ENCFF366YQT.bam released s3://encode-public/2020/09/29/b2bfc44a-a936-4d69-a88f-321e2c9a34d2/ENCFF366YQT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF347URC fastq fastq reads ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 664199269 Tim Reddy, Duke 62de0ae4a9e243dd1b04ff95b75f8d18 SRA:SRR5129565 https://www.encodeproject.org/files/ENCFF347URC/@@download/ENCFF347URC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/2079056e-2506-4d91-b903-82ed9e460697/ENCFF347URC.fastq.gz ENCFF238JFM fastq fastq reads ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 865362747 Tim Reddy, Duke 34f69ba560b4fa3bf9c369dd295249eb SRA:SRR5129564 https://www.encodeproject.org/files/ENCFF238JFM/@@download/ENCFF238JFM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/d9868719-ce7f-4a0e-a33b-d002acf4ec02/ENCFF238JFM.fastq.gz ENCFF593ZTF fastq fastq reads ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 847480543 Tim Reddy, Duke 68b39a19e5093a533c1425cd815a78df SRA:SRR5129563 https://www.encodeproject.org/files/ENCFF593ZTF/@@download/ENCFF593ZTF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/da58d90f-a879-451f-b7cc-bd393155507f/ENCFF593ZTF.fastq.gz ENCFF239YPJ bam bam alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF238JFM/ 937123815 Tim Reddy, Duke 671c7d51229f6413a179b71895d2340e https://www.encodeproject.org/files/ENCFF239YPJ/@@download/ENCFF239YPJ.bam released s3://encode-public/2016/12/15/10777f21-536e-4fbe-ad4f-9257d7733c7a/ENCFF239YPJ.bam Lab custom GRCh38 archived ENCFF967IGG bam bam alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF347URC/ 518982749 Tim Reddy, Duke 8ca25dbded5bcf8b10a0fc0cd3ac98f9 https://www.encodeproject.org/files/ENCFF967IGG/@@download/ENCFF967IGG.bam released s3://encode-public/2016/12/15/af99e535-84ae-4dd0-a901-3cc2a6cd7917/ENCFF967IGG.bam Lab custom GRCh38 archived ENCFF836FDV bam bam alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF593ZTF/ 931249317 Tim Reddy, Duke 35725675fa98eafd16855419b32d8805 https://www.encodeproject.org/files/ENCFF836FDV/@@download/ENCFF836FDV.bam released s3://encode-public/2016/12/15/ff91b685-7cec-49d8-9437-03edb6e3317c/ENCFF836FDV.bam Lab custom GRCh38 archived ENCFF982XVW bam bam unfiltered alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF347URC/, /files/ENCFF110MCL/ 768740413 ENCODE Processing Pipeline 68444bfb32ea6b5d3ab8625c451797da https://www.encodeproject.org/files/ENCFF982XVW/@@download/ENCFF982XVW.bam released s3://encode-public/2020/09/29/04b679ef-aba3-4a8c-bea0-5b20482b9752/ENCFF982XVW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF137KXM bam bam unfiltered alignments GRCh38 ENCSR366VPA Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF238JFM/ 1161572357 ENCODE Processing Pipeline ffecf0793467c634d7a97070398fc32b https://www.encodeproject.org/files/ENCFF137KXM/@@download/ENCFF137KXM.bam released s3://encode-public/2020/09/29/bd676afe-069b-4c32-990c-fe95cbaadc92/ENCFF137KXM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF574YXZ fastq fastq reads ENCSR961THO Control ChIP-seq /worm-donors/ENCDO489TBW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172789/'], '@type': ['Target', 'Item'], 'name': 'irx-1-celegans', 'label': 'irx-1', '@id': '/targets/irx-1-celegans/', 'title': 'irx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '598292cd-7c86-407f-8cd1-6b6aa03d6f9b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 412313875 Kevin White, UChicago e0ca159b300e4f538f8bae431234b444 https://www.encodeproject.org/files/ENCFF574YXZ/@@download/ENCFF574YXZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/ceb39609-fbd4-498d-a07e-353ac1113b24/ENCFF574YXZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF475UYC bam bam alignments ce10 ENCSR961THO Control ChIP-seq /worm-donors/ENCDO489TBW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172789/'], '@type': ['Target', 'Item'], 'name': 'irx-1-celegans', 'label': 'irx-1', '@id': '/targets/irx-1-celegans/', 'title': 'irx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '598292cd-7c86-407f-8cd1-6b6aa03d6f9b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF574YXZ/ 481217603 Kevin White, UChicago ae6c65bba968c4cd0f5db89b15df0e3a https://www.encodeproject.org/files/ENCFF475UYC/@@download/ENCFF475UYC.bam released s3://encode-public/2015/08/19/457c1059-bf9d-4800-a59f-7b0733802c20/ENCFF475UYC.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF673FOB bigWig bigWig read-depth normalized signal ce10 ENCSR961THO Control ChIP-seq /worm-donors/ENCDO489TBW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172789/'], '@type': ['Target', 'Item'], 'name': 'irx-1-celegans', 'label': 'irx-1', '@id': '/targets/irx-1-celegans/', 'title': 'irx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '598292cd-7c86-407f-8cd1-6b6aa03d6f9b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF475UYC/ 9951647 Kevin White, UChicago 8b124fb772d367a73311a627611a9e5c https://www.encodeproject.org/files/ENCFF673FOB/@@download/ENCFF673FOB.bigWig released s3://encode-public/2015/10/02/48b22caf-d524-4895-a921-a9639e8a6765/ENCFF673FOB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF043TTT bigWig bigWig signal of unique reads ce10 ENCSR961THO Control ChIP-seq /worm-donors/ENCDO489TBW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172789/'], '@type': ['Target', 'Item'], 'name': 'irx-1-celegans', 'label': 'irx-1', '@id': '/targets/irx-1-celegans/', 'title': 'irx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '598292cd-7c86-407f-8cd1-6b6aa03d6f9b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF475UYC/ 9979423 Kevin White, UChicago c70837576d599515e310aa8c766cc6a2 https://www.encodeproject.org/files/ENCFF043TTT/@@download/ENCFF043TTT.bigWig released s3://encode-public/2015/10/02/60bf486b-3367-47c9-a2eb-05e9e353d7a4/ENCFF043TTT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF979NSP bam bam alignments ce11 ENCSR961THO Control ChIP-seq /worm-donors/ENCDO489TBW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172789/'], '@type': ['Target', 'Item'], 'name': 'irx-1-celegans', 'label': 'irx-1', '@id': '/targets/irx-1-celegans/', 'title': 'irx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '598292cd-7c86-407f-8cd1-6b6aa03d6f9b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF574YXZ/ 481600121 Kevin White, UChicago 3a11e1a32a229097fa9bedac9111b1ad https://www.encodeproject.org/files/ENCFF979NSP/@@download/ENCFF979NSP.bam released s3://encode-public/2016/01/17/efa03a43-f1c4-4693-a698-51b638a6a05f/ENCFF979NSP.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF124QWG bigWig bigWig signal of unique reads ce11 ENCSR961THO Control ChIP-seq /worm-donors/ENCDO489TBW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172789/'], '@type': ['Target', 'Item'], 'name': 'irx-1-celegans', 'label': 'irx-1', '@id': '/targets/irx-1-celegans/', 'title': 'irx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '598292cd-7c86-407f-8cd1-6b6aa03d6f9b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF979NSP/ 9976490 Kevin White, UChicago 0b559cae590f16e26977dbf296a3af96 https://www.encodeproject.org/files/ENCFF124QWG/@@download/ENCFF124QWG.bigWig released s3://encode-public/2016/02/03/a3fab18a-cdf4-4039-b06b-edd0c821bc9c/ENCFF124QWG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF134ZUJ bigWig bigWig read-depth normalized signal ce11 ENCSR961THO Control ChIP-seq /worm-donors/ENCDO489TBW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172789/'], '@type': ['Target', 'Item'], 'name': 'irx-1-celegans', 'label': 'irx-1', '@id': '/targets/irx-1-celegans/', 'title': 'irx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '598292cd-7c86-407f-8cd1-6b6aa03d6f9b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF979NSP/ 9945533 Kevin White, UChicago 331a052aca8ffd6e6d43fef39742690b https://www.encodeproject.org/files/ENCFF134ZUJ/@@download/ENCFF134ZUJ.bigWig released s3://encode-public/2016/02/03/6d2e58a7-5ee5-4e3f-b45c-34fa92ba4ea8/ENCFF134ZUJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF294LLT bam bam alignments GRCh38 ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF754IDJ/ 1717140574 Tim Reddy, Duke e416e43755b9d9acd063909cd5888662 https://www.encodeproject.org/files/ENCFF294LLT/@@download/ENCFF294LLT.bam released s3://encode-public/2017/10/13/4a326fc4-8a6f-4e9f-925e-2e13708888f8/ENCFF294LLT.bam Lab custom GRCh38 archived ENCFF102HBE bam bam alignments GRCh38 ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF412LGW/ 1269372313 Tim Reddy, Duke 1dc5687d58d8acd5341acd3896f4c1e8 https://www.encodeproject.org/files/ENCFF102HBE/@@download/ENCFF102HBE.bam released s3://encode-public/2017/10/13/660a5018-84fa-4124-a973-54469961e382/ENCFF102HBE.bam Lab custom GRCh38 archived ENCFF851QPA fastq fastq reads ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 1372541225 Tim Reddy, Duke d6ce5ddbf5b8e66414780ed0a70112b1 SRA:SRR14637526 https://www.encodeproject.org/files/ENCFF851QPA/@@download/ENCFF851QPA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/13/9c7eeb94-eb67-4441-b8e1-695d137df56d/ENCFF851QPA.fastq.gz ENCFF949OJL bam bam alignments GRCh38 ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF851QPA/ 1508462807 Tim Reddy, Duke 11a646049490a4b6dce48243b04a5fd9 https://www.encodeproject.org/files/ENCFF949OJL/@@download/ENCFF949OJL.bam released s3://encode-public/2017/10/13/586b35b0-4858-4d9a-8334-5209d0e7c4fd/ENCFF949OJL.bam Lab custom GRCh38 archived ENCFF754IDJ fastq fastq reads ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 1573686652 Tim Reddy, Duke 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1_1 51 /files/ENCFF110MCL/, /files/ENCFF754IDJ/ 1766223190 ENCODE Processing Pipeline 089d9364aa15ba924cdf7ea87af3ea73 https://www.encodeproject.org/files/ENCFF156WXQ/@@download/ENCFF156WXQ.bam released s3://encode-public/2020/09/30/5403a01b-6dd9-4a34-bff6-2c8929a7bb0f/ENCFF156WXQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF818FGX bam bam unfiltered alignments GRCh38 ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF754IDJ/ 2135344343 ENCODE Processing Pipeline 1b9f1f54962894affd88f18aa18a8f24 https://www.encodeproject.org/files/ENCFF818FGX/@@download/ENCFF818FGX.bam released s3://encode-public/2020/09/30/f8634307-05f2-4ef9-b1e2-0acaf3dd61d7/ENCFF818FGX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF047PZM bam bam alignments GRCh38 ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF851QPA/, /files/ENCFF110MCL/ 1511675319 ENCODE Processing Pipeline ff681c25e9a6f17e4a45aa456ac07f5c https://www.encodeproject.org/files/ENCFF047PZM/@@download/ENCFF047PZM.bam released s3://encode-public/2020/09/30/f5ea94c8-efea-479f-91dd-4ca8b44b83b1/ENCFF047PZM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF640NAZ bam bam alignments GRCh38 ENCSR212FST Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2017-10-19 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF412LGW/ 1303439209 ENCODE Processing Pipeline 210711f732980d351d4b99e7f82900f1 https://www.encodeproject.org/files/ENCFF640NAZ/@@download/ENCFF640NAZ.bam released s3://encode-public/2020/09/30/00f3a484-4198-4fe0-a940-53efd48449c7/ENCFF640NAZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF228IDC fastq fastq reads ENCSR111ZAD Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis 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single-ended 1191437471 Bradley Bernstein, Broad 4d710ed19533507904c60c5263b24c6c SRA:SRR13804171 https://www.encodeproject.org/files/ENCFF703GXR/@@download/ENCFF703GXR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/8e43ed39-3fc6-443a-9238-fdb161b11049/ENCFF703GXR.fastq.gz ENCFF863EBS fastq fastq reads ENCSR111ZAD Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 704952243 Bradley Bernstein, Broad d9b7528ff643c0e0a440c35ae5a95f94 SRA:SRR13804172 https://www.encodeproject.org/files/ENCFF863EBS/@@download/ENCFF863EBS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/81b2c51a-ae7b-4a50-b4ed-b2cd789ea32f/ENCFF863EBS.fastq.gz ENCFF825WBG bam bam unfiltered alignments GRCh38 ENCSR111ZAD Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF863EBS/, /files/ENCFF252LYU/, /files/ENCFF228IDC/, /files/ENCFF703GXR/ 3639927159 ENCODE Processing Pipeline d83a7d21bfca98e0264978ab18784332 https://www.encodeproject.org/files/ENCFF825WBG/@@download/ENCFF825WBG.bam released s3://encode-public/2020/07/19/9d6c713c-9a0a-4235-84cf-53bca5edca5a/ENCFF825WBG.bam ENCODE4 v1.5.0 GRCh38 released ENCFF348EEB bam bam alignments GRCh38 ENCSR111ZAD Control ChIP-seq /human-donors/ENCDO615YQP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF863EBS/, /files/ENCFF252LYU/, /files/ENCFF228IDC/, /files/ENCFF703GXR/ 3034277736 ENCODE Processing Pipeline 09ed2f3aa97e1caa374fac29c29a7566 https://www.encodeproject.org/files/ENCFF348EEB/@@download/ENCFF348EEB.bam released s3://encode-public/2020/07/19/a3cd020c-a51b-4fbd-8b99-7cb3a747b87a/ENCFF348EEB.bam ENCODE4 v1.5.0 GRCh38 released ENCFF097KQX fastq fastq reads ENCSR033XKQ Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 791737696 Bradley Bernstein, Broad ff17d843c107f74cf315f3bab27b2322 SRA:SRR13803890 https://www.encodeproject.org/files/ENCFF097KQX/@@download/ENCFF097KQX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/92824860-3cfb-4961-b2aa-f9fc3d4b596a/ENCFF097KQX.fastq.gz ENCFF950WTJ fastq fastq reads ENCSR033XKQ Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 753458110 Bradley Bernstein, Broad 82189ec57e3ed60840a1f7f878594be8 SRA:SRR13803891 https://www.encodeproject.org/files/ENCFF950WTJ/@@download/ENCFF950WTJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/83242869-4bb6-4d03-915c-a473c6b3e36c/ENCFF950WTJ.fastq.gz ENCFF498KFC fastq fastq reads ENCSR033XKQ Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 914887895 Bradley Bernstein, Broad 0ed91186bc7b2512cbe1fdf2e4134926 SRA:SRR13803892 https://www.encodeproject.org/files/ENCFF498KFC/@@download/ENCFF498KFC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/b052fe75-64e3-4079-ab98-b2ec370de9f5/ENCFF498KFC.fastq.gz ENCFF152PEL fastq fastq reads ENCSR033XKQ Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 944163281 Bradley Bernstein, Broad 8973d48b7736b823cfe679438d9322a1 SRA:SRR13803893 https://www.encodeproject.org/files/ENCFF152PEL/@@download/ENCFF152PEL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/559fcaa5-a068-4be1-9b74-854c2027794c/ENCFF152PEL.fastq.gz ENCFF262RRW bam bam alignments GRCh38 ENCSR033XKQ Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF950WTJ/, /files/ENCFF152PEL/, /files/ENCFF097KQX/, /files/ENCFF498KFC/, /files/ENCFF110MCL/ 2662887320 ENCODE Processing Pipeline 1256f83ea9a650a2b1a3f6622842046e https://www.encodeproject.org/files/ENCFF262RRW/@@download/ENCFF262RRW.bam released s3://encode-public/2020/07/19/65fc0bcb-7a0a-45b2-859f-6e9d35437a0e/ENCFF262RRW.bam ENCODE4 v1.5.0 GRCh38 released ENCFF452ERV bam bam unfiltered alignments GRCh38 ENCSR033XKQ Control ChIP-seq /human-donors/ENCDO017WNO/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF950WTJ/, /files/ENCFF152PEL/, /files/ENCFF097KQX/, /files/ENCFF498KFC/, /files/ENCFF110MCL/ 3320573248 ENCODE Processing Pipeline a86857230416478527c0e5b3f85fd67e https://www.encodeproject.org/files/ENCFF452ERV/@@download/ENCFF452ERV.bam released s3://encode-public/2020/07/19/7faf8ee3-d2c2-40af-b4cd-a064882d2db6/ENCFF452ERV.bam ENCODE4 v1.5.0 GRCh38 released ENCFF250GSO bam bam alignments dm3 ENCSR903IOU Control ChIP-seq /fly-donors/ENCDO859ZDI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37818/'], '@type': ['Target', 'Item'], 'name': 'CG3065-dmelanogaster', 'label': 'CG3065', '@id': '/targets/CG3065-dmelanogaster/', 'title': 'CG3065 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aa13ba5-ec36-4351-b249-1fd081b41934', 'status': 'released'} dm3 2R 19847531 19870279 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF058WBY/, /files/ENCFF059UHX/ 787918353 Kevin White, UChicago 8e252573d438f6329bc0d00c63758d9c https://www.encodeproject.org/files/ENCFF250GSO/@@download/ENCFF250GSO.bam released s3://encode-public/2016/08/02/9ac712cd-f881-44ea-9cf4-ee61ea825173/ENCFF250GSO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF058WBY fastq fastq reads ENCSR903IOU Control ChIP-seq /fly-donors/ENCDO859ZDI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37818/'], '@type': ['Target', 'Item'], 'name': 'CG3065-dmelanogaster', 'label': 'CG3065', '@id': '/targets/CG3065-dmelanogaster/', 'title': 'CG3065 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aa13ba5-ec36-4351-b249-1fd081b41934', 'status': 'released'} dm3 2R 19847531 19870279 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 649739803 Kevin White, UChicago f54b062aebe554e1ef8706b5322d0c99 https://www.encodeproject.org/files/ENCFF058WBY/@@download/ENCFF058WBY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/02/13acf010-052e-4894-a584-000d29dcea04/ENCFF058WBY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF686DQA bam bam alignments dm6 ENCSR903IOU Control ChIP-seq /fly-donors/ENCDO859ZDI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37818/'], '@type': ['Target', 'Item'], 'name': 'CG3065-dmelanogaster', 'label': 'CG3065', '@id': '/targets/CG3065-dmelanogaster/', 'title': 'CG3065 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aa13ba5-ec36-4351-b249-1fd081b41934', 'status': 'released'} dm3 2R 19847531 19870279 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF058WBY/, /files/ENCFF479RCH/ 784621170 Kevin White, UChicago 9a5de7cabf9a221d79d59a86dee582a8 https://www.encodeproject.org/files/ENCFF686DQA/@@download/ENCFF686DQA.bam released s3://encode-public/2016/08/04/23f47762-8f09-4a84-9b8c-8fc935d20da7/ENCFF686DQA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF693XIV bigWig bigWig signal of unique reads dm3 ENCSR903IOU Control ChIP-seq /fly-donors/ENCDO859ZDI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37818/'], '@type': ['Target', 'Item'], 'name': 'CG3065-dmelanogaster', 'label': 'CG3065', '@id': '/targets/CG3065-dmelanogaster/', 'title': 'CG3065 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aa13ba5-ec36-4351-b249-1fd081b41934', 'status': 'released'} dm3 2R 19847531 19870279 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF250GSO/ 15323299 Kevin White, UChicago cc2f310c79ae1f14222f51c7a5c3b194 https://www.encodeproject.org/files/ENCFF693XIV/@@download/ENCFF693XIV.bigWig released s3://encode-public/2016/08/04/be70b419-6fbe-417e-a8a4-04b55146cb64/ENCFF693XIV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF089NLM bigWig bigWig read-depth normalized signal dm3 ENCSR903IOU Control ChIP-seq /fly-donors/ENCDO859ZDI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37818/'], '@type': ['Target', 'Item'], 'name': 'CG3065-dmelanogaster', 'label': 'CG3065', '@id': '/targets/CG3065-dmelanogaster/', 'title': 'CG3065 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aa13ba5-ec36-4351-b249-1fd081b41934', 'status': 'released'} dm3 2R 19847531 19870279 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF250GSO/ 15385827 Kevin White, UChicago bbc3a83ebc7f33ca6e6ace0595d60642 https://www.encodeproject.org/files/ENCFF089NLM/@@download/ENCFF089NLM.bigWig released s3://encode-public/2016/08/04/a40b2262-0fef-4278-9bb9-8eb4ccaae67b/ENCFF089NLM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF386QLD bigWig bigWig read-depth normalized signal dm6 ENCSR903IOU Control ChIP-seq /fly-donors/ENCDO859ZDI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37818/'], '@type': ['Target', 'Item'], 'name': 'CG3065-dmelanogaster', 'label': 'CG3065', '@id': '/targets/CG3065-dmelanogaster/', 'title': 'CG3065 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aa13ba5-ec36-4351-b249-1fd081b41934', 'status': 'released'} dm3 2R 19847531 19870279 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF686DQA/ 17516986 Kevin White, UChicago fd62ca647c7e0ef9120469d8db2937a8 https://www.encodeproject.org/files/ENCFF386QLD/@@download/ENCFF386QLD.bigWig released s3://encode-public/2016/08/04/e1d84499-3df9-423a-a9aa-7ce209a8524e/ENCFF386QLD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF123XEM bigWig bigWig signal of unique reads dm6 ENCSR903IOU Control ChIP-seq /fly-donors/ENCDO859ZDI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37818/'], '@type': ['Target', 'Item'], 'name': 'CG3065-dmelanogaster', 'label': 'CG3065', '@id': '/targets/CG3065-dmelanogaster/', 'title': 'CG3065 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aa13ba5-ec36-4351-b249-1fd081b41934', 'status': 'released'} dm3 2R 19847531 19870279 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF686DQA/ 17441596 Kevin White, UChicago e1b6d1b3fb93d4623f368f46ca472f76 https://www.encodeproject.org/files/ENCFF123XEM/@@download/ENCFF123XEM.bigWig released s3://encode-public/2016/08/04/b728749d-0be7-48ae-8dfb-388662125167/ENCFF123XEM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF097TMN fastq fastq reads ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF704QNQ/ 3170961427 Michael Snyder, Stanford 495d4f6ca377e6965766bc1f84ffc6bb SRA:SRR6212595 https://www.encodeproject.org/files/ENCFF097TMN/@@download/ENCFF097TMN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/21c1ff03-8d84-4442-adc6-86eb5587f1e7/ENCFF097TMN.fastq.gz mild to moderate bottlenecking ENCFF704QNQ fastq fastq reads ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF097TMN/ 3503307673 Michael Snyder, Stanford 0a4cb334bc17417839c70c15cf611f5a SRA:SRR6212595 https://www.encodeproject.org/files/ENCFF704QNQ/@@download/ENCFF704QNQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/a237acc8-f72d-4d19-9f45-e3ed310cc817/ENCFF704QNQ.fastq.gz mild to moderate bottlenecking ENCFF908NEK bam bam unfiltered alignments hg19 ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF704QNQ/, /files/ENCFF097TMN/ 6430152671 ENCODE Processing Pipeline fb1121a2a0d4c88822227f24a7e07a91 https://www.encodeproject.org/files/ENCFF908NEK/@@download/ENCFF908NEK.bam released s3://encode-public/2016/11/02/19d0e86c-4ae5-4f71-9cf5-1e308ad02102/ENCFF908NEK.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF906NHW bam bam unfiltered alignments GRCh38 ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF704QNQ/, /files/ENCFF097TMN/ 6440220329 ENCODE Processing Pipeline c48381fba2d28dba572242eab8d41729 https://www.encodeproject.org/files/ENCFF906NHW/@@download/ENCFF906NHW.bam released s3://encode-public/2016/11/02/01a1e0f8-ac18-4b46-92dd-ccf0805f5b64/ENCFF906NHW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF047UXO bam bam alignments hg19 ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF704QNQ/, /files/ENCFF097TMN/ 4928468317 ENCODE Processing Pipeline cece1ed55276fd8a7de57dd96f418657 https://www.encodeproject.org/files/ENCFF047UXO/@@download/ENCFF047UXO.bam released s3://encode-public/2016/11/02/ca50663b-9c3d-4eff-83d2-958a89562e7a/ENCFF047UXO.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF308UCP bam bam alignments GRCh38 ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF704QNQ/, /files/ENCFF097TMN/ 4940847836 ENCODE Processing Pipeline a3cda64f1010cd7ed4fc05118dcaf0ac https://www.encodeproject.org/files/ENCFF308UCP/@@download/ENCFF308UCP.bam released s3://encode-public/2016/11/02/3248cb0a-e213-4707-ba59-2dd54b941530/ENCFF308UCP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF257GMA bam bam unfiltered alignments GRCh38 ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF097TMN/, /files/ENCFF704QNQ/ 6445362412 ENCODE Processing Pipeline ae73c1359977436aa9bbe650f8acd735 https://www.encodeproject.org/files/ENCFF257GMA/@@download/ENCFF257GMA.bam released s3://encode-public/2020/06/03/b8b26713-d2f3-40be-b13a-5baa228a5c7d/ENCFF257GMA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF541JOE bam bam alignments GRCh38 ENCSR079WBX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF097TMN/, /files/ENCFF704QNQ/ 4854272482 ENCODE Processing Pipeline 6d28231acc4c391e60ba4d6375f7372b https://www.encodeproject.org/files/ENCFF541JOE/@@download/ENCFF541JOE.bam released s3://encode-public/2020/06/03/df67e28b-834e-440a-bcc9-b8247e3716af/ENCFF541JOE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF745HXH bam bam redacted alignments GRCh38 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF457TNI/ 180821323 ENCODE Processing Pipeline 94a917332bd725396239761e8139c791 https://www.encodeproject.org/files/ENCFF745HXH/@@download/ENCFF745HXH.bam released s3://encode-public/2017/11/28/2291967f-4b20-45fb-a165-7f1a919b4a8f/ENCFF745HXH.bam ENCODE3 GRCh38 archived low read depth ENCFF608LNW bam bam redacted unfiltered alignments GRCh38 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF457TNI/ 231948161 ENCODE Processing Pipeline d0b805a1d8f4b044dec904e2d58f0209 https://www.encodeproject.org/files/ENCFF608LNW/@@download/ENCFF608LNW.bam released s3://encode-public/2017/11/28/68840830-ddf2-4794-ba85-a9e089c4ce0b/ENCFF608LNW.bam ENCODE3 GRCh38 archived low read depth ENCFF075HGO bam bam redacted unfiltered alignments GRCh38 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF457TNI/, /files/ENCFF641SYT/ 634103972 ENCODE Processing Pipeline 6052dfb107956bb7a38bf8a23ae1aa30 https://www.encodeproject.org/files/ENCFF075HGO/@@download/ENCFF075HGO.bam released s3://encode-public/2017/11/28/20499fe0-fb73-4741-8b20-f4d938f27b9d/ENCFF075HGO.bam ENCODE3 GRCh38 archived low read depth ENCFF876EWW bam bam redacted alignments GRCh38 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF457TNI/, /files/ENCFF641SYT/ 325693748 ENCODE Processing Pipeline 6bc7a4668d85fb729dccc35b76f79d9b https://www.encodeproject.org/files/ENCFF876EWW/@@download/ENCFF876EWW.bam released s3://encode-public/2017/11/28/d86866a3-e014-48b9-b4ad-3d9ad5a4abfd/ENCFF876EWW.bam ENCODE3 GRCh38 archived low read depth ENCFF262XLU bam bam redacted alignments hg19 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF457TNI/, /files/ENCFF641SYT/ 325352944 ENCODE Processing Pipeline ff208ada1f6a2940b3f7df87129a64f1 https://www.encodeproject.org/files/ENCFF262XLU/@@download/ENCFF262XLU.bam released s3://encode-public/2018/01/20/5b459ac8-6e68-4c41-8956-9edd1dfcbc60/ENCFF262XLU.bam ENCODE3 hg19 archived low read depth ENCFF490HXV bam bam redacted unfiltered alignments hg19 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF457TNI/, /files/ENCFF641SYT/ 623549811 ENCODE Processing Pipeline c40f3e26ebf42b1415b5c11076ac5b5c https://www.encodeproject.org/files/ENCFF490HXV/@@download/ENCFF490HXV.bam released s3://encode-public/2018/01/20/10d18426-acbc-452e-8da6-cbb6eb182477/ENCFF490HXV.bam ENCODE3 hg19 archived low read depth ENCFF248RQB bam bam redacted unfiltered alignments hg19 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF457TNI/ 227928078 ENCODE Processing Pipeline 053ac71a9815841d38f7a29ac98f60e4 https://www.encodeproject.org/files/ENCFF248RQB/@@download/ENCFF248RQB.bam released s3://encode-public/2018/01/21/f6c8d207-2ba5-42b2-a319-2c6ec856b417/ENCFF248RQB.bam ENCODE3 hg19 archived low read depth ENCFF217OXB bam bam redacted alignments hg19 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF457TNI/ 180519624 ENCODE Processing Pipeline 1c1a0dc208695bca87f5dee8ece89129 https://www.encodeproject.org/files/ENCFF217OXB/@@download/ENCFF217OXB.bam released s3://encode-public/2018/01/21/ad77f3c3-7790-4f69-a8ba-dbacd5a16a7e/ENCFF217OXB.bam ENCODE3 hg19 archived low read depth ENCFF663KGF bam bam redacted alignments GRCh38 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF100FEQ/, /files/ENCFF753NVV/, /files/ENCFF110MCL/ 2039756303 ENCODE Processing Pipeline a37d62e9dd83b938d9e7bc2eeca018fe https://www.encodeproject.org/files/ENCFF663KGF/@@download/ENCFF663KGF.bam released s3://encode-public/2021/01/28/fd527dd9-4866-401c-954b-6ffbca501227/ENCFF663KGF.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF209CGN bam bam redacted alignments GRCh38 ENCSR470SYZ Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF753NVV/, /files/ENCFF110MCL/ 1192754734 ENCODE Processing Pipeline 95617287b9912f474d6b64ab5798db33 https://www.encodeproject.org/files/ENCFF209CGN/@@download/ENCFF209CGN.bam released s3://encode-public/2021/02/12/1453914f-e775-492d-bdc1-e55ae75e3551/ENCFF209CGN.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF640YYD fastq fastq reads ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 892051511 Tim Reddy, Duke 64c0e396fe5c8b1fd25447d2b1aa92fe SRA:SRR5129559 https://www.encodeproject.org/files/ENCFF640YYD/@@download/ENCFF640YYD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/75bb64c9-8b2e-4c3c-a6fa-4aaca44c27da/ENCFF640YYD.fastq.gz ENCFF527ZVN fastq fastq reads ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 835547895 Tim Reddy, Duke 7b95e50000a175c180b93ec8452827bf SRA:SRR5129558 https://www.encodeproject.org/files/ENCFF527ZVN/@@download/ENCFF527ZVN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/b2bfd02a-30d5-4eae-a8d2-faaf00562044/ENCFF527ZVN.fastq.gz ENCFF518AZC fastq fastq reads ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 906922200 Tim Reddy, Duke 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formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF640YYD/ 977667984 Tim Reddy, Duke 7a453dc5b1b37bccbfe18c7d937eb45d https://www.encodeproject.org/files/ENCFF865ZMH/@@download/ENCFF865ZMH.bam released s3://encode-public/2016/12/15/64bc41df-44d4-4ef3-b8c1-d10e19f80cfa/ENCFF865ZMH.bam Lab custom GRCh38 archived ENCFF676EAJ bam bam alignments GRCh38 ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF518AZC/ 991730445 Tim Reddy, Duke 57852d717fdf4fcb85280672f12264a5 https://www.encodeproject.org/files/ENCFF676EAJ/@@download/ENCFF676EAJ.bam released s3://encode-public/2016/12/15/6a68ee3f-ddb1-468f-ad7d-7ef40b60676b/ENCFF676EAJ.bam Lab custom GRCh38 archived ENCFF254BLZ bam bam unfiltered alignments GRCh38 ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF527ZVN/ 1131070850 ENCODE Processing Pipeline d58e5b4b5a26cfd0d3cdf9d67a598c72 https://www.encodeproject.org/files/ENCFF254BLZ/@@download/ENCFF254BLZ.bam released s3://encode-public/2020/09/29/16505605-e262-4cd1-872d-3812ecd84c36/ENCFF254BLZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF779CDH bam bam unfiltered alignments GRCh38 ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF518AZC/, /files/ENCFF110MCL/ 1223774595 ENCODE Processing Pipeline 9cea22c01accab239418089ad20a875e https://www.encodeproject.org/files/ENCFF779CDH/@@download/ENCFF779CDH.bam released s3://encode-public/2020/09/29/b52ec918-d4c7-449e-925a-1522917dc7ab/ENCFF779CDH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF531ZTY bam bam unfiltered alignments GRCh38 ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF640YYD/, /files/ENCFF110MCL/ 1208828569 ENCODE Processing Pipeline ae20e48cb22f4bbcb62c4d501004e2a4 https://www.encodeproject.org/files/ENCFF531ZTY/@@download/ENCFF531ZTY.bam released s3://encode-public/2020/09/29/2e74390c-eea6-4a1a-bf5d-353468297705/ENCFF531ZTY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF901GIJ bam bam alignments GRCh38 ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF527ZVN/ 956666502 ENCODE Processing Pipeline 733e509b3bfcee06868a516cff1a0bf6 https://www.encodeproject.org/files/ENCFF901GIJ/@@download/ENCFF901GIJ.bam released s3://encode-public/2020/09/29/8809ae3b-1406-40eb-a84c-27b7bb3870ce/ENCFF901GIJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF201DQK bam bam alignments GRCh38 ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF640YYD/, /files/ENCFF110MCL/ 1027809337 ENCODE Processing Pipeline 4342d403c23a7a9bc65ac84f85430d73 https://www.encodeproject.org/files/ENCFF201DQK/@@download/ENCFF201DQK.bam released s3://encode-public/2020/09/29/c78a7ba7-cb27-4e43-bac0-235b91c06ca4/ENCFF201DQK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF419SVR bam bam alignments GRCh38 ENCSR233BJW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF518AZC/, /files/ENCFF110MCL/ 1043636115 ENCODE Processing Pipeline 26047963a6bf5fc27f74d186550d8979 https://www.encodeproject.org/files/ENCFF419SVR/@@download/ENCFF419SVR.bam released s3://encode-public/2020/09/29/eb38e0f0-b022-4bd8-b89f-c0b89998ee45/ENCFF419SVR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF587ULR fastq fastq reads ENCSR334KTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF938DTY/ 2751620425 Michael Snyder, Stanford 0cbbafe2e3d34ed9f24ab2edfbc4a9da SRA:SRR14832618 https://www.encodeproject.org/files/ENCFF587ULR/@@download/ENCFF587ULR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/02/17/a0a8d02d-7b87-4d5e-b408-950392430c6a/ENCFF587ULR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF938DTY fastq fastq reads ENCSR334KTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF587ULR/ 2877033521 Michael Snyder, Stanford ede07982eedd66f26fb567526c9ba682 SRA:SRR14832618 https://www.encodeproject.org/files/ENCFF938DTY/@@download/ENCFF938DTY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/02/17/23c10b57-a4eb-41d8-8a34-b5527992283e/ENCFF938DTY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF453YCW bam bam unfiltered alignments GRCh38 ENCSR334KTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF587ULR/, /files/ENCFF938DTY/ 5101535067 ENCODE Processing Pipeline e70346ea4f00a6976a6ff3905a216fa1 https://www.encodeproject.org/files/ENCFF453YCW/@@download/ENCFF453YCW.bam released s3://encode-public/2021/03/18/49848479-86a7-4c0b-bb5a-f336eb8e6743/ENCFF453YCW.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF974IKU bam bam alignments GRCh38 ENCSR334KTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF587ULR/, /files/ENCFF938DTY/ 3317789708 ENCODE Processing Pipeline 5a12ab940dcd5f98e33dae267ce43b68 https://www.encodeproject.org/files/ENCFF974IKU/@@download/ENCFF974IKU.bam released s3://encode-public/2021/03/18/eaf0fbc0-ad5d-4c44-81aa-153a20b85731/ENCFF974IKU.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF415UOP fastq fastq reads ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF353KTB/ 2891532831 Michael Snyder, Stanford a77974381ccb4a536f55b6d35ce35fa9 SRA:SRR6213572 https://www.encodeproject.org/files/ENCFF415UOP/@@download/ENCFF415UOP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/7a6af143-eb95-448c-bd01-bb30631ed2bf/ENCFF415UOP.fastq.gz mild to moderate bottlenecking ENCFF353KTB fastq fastq reads ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF415UOP/ 3192646926 Michael Snyder, Stanford e7866c94af18f4be87c05444ae9328cf SRA:SRR6213572 https://www.encodeproject.org/files/ENCFF353KTB/@@download/ENCFF353KTB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/3dbf50eb-c820-43ab-9816-eba5727ad648/ENCFF353KTB.fastq.gz mild to moderate bottlenecking ENCFF613KET bam bam unfiltered alignments hg19 ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF415UOP/, /files/ENCFF353KTB/ 5869363582 ENCODE Processing Pipeline 2c01e8b978f2c7135f1a8d1779197721 https://www.encodeproject.org/files/ENCFF613KET/@@download/ENCFF613KET.bam released s3://encode-public/2016/11/02/dbd6e789-b02e-4e77-a059-88213dbe869f/ENCFF613KET.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF828ZRU bam bam unfiltered alignments GRCh38 ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF415UOP/, /files/ENCFF353KTB/ 5877999455 ENCODE Processing Pipeline e77904f8414cfabccf9af5319e5a598a https://www.encodeproject.org/files/ENCFF828ZRU/@@download/ENCFF828ZRU.bam released s3://encode-public/2016/11/02/2b9f5783-47cc-49b0-be00-20dd22994f3c/ENCFF828ZRU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF191LEP bam bam alignments hg19 ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF415UOP/, /files/ENCFF353KTB/ 4174280105 ENCODE Processing Pipeline 08a0d5d4629d6e0131c04d45fadada8d https://www.encodeproject.org/files/ENCFF191LEP/@@download/ENCFF191LEP.bam released s3://encode-public/2016/11/02/4a00a331-b270-407d-bac2-78373ac2abbb/ENCFF191LEP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF047KMB bam bam alignments GRCh38 ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF415UOP/, /files/ENCFF353KTB/ 4185744762 ENCODE Processing Pipeline c0ef3c3fca0b2fb730ae9e9fa953be76 https://www.encodeproject.org/files/ENCFF047KMB/@@download/ENCFF047KMB.bam released s3://encode-public/2016/11/02/6b6f43ec-5e65-4231-b09a-69fa68d03cf5/ENCFF047KMB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF096OJH bam bam unfiltered alignments GRCh38 ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF415UOP/, /files/ENCFF353KTB/ 5886540506 ENCODE Processing Pipeline e6e0da59b577331d9ecbc3bc572e1ba0 https://www.encodeproject.org/files/ENCFF096OJH/@@download/ENCFF096OJH.bam released s3://encode-public/2020/06/02/7da929ba-a5b0-4db8-9601-686a539aeee5/ENCFF096OJH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF464SEW bam bam alignments GRCh38 ENCSR515JGE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF415UOP/, /files/ENCFF353KTB/ 4121111781 ENCODE Processing Pipeline 76dead0f2b19a40cf4e5d3899c867513 https://www.encodeproject.org/files/ENCFF464SEW/@@download/ENCFF464SEW.bam released s3://encode-public/2020/06/02/e4e62265-5964-4835-a06a-cb4e87e49023/ENCFF464SEW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF470KES fastq fastq reads ENCSR439VUM Control ChIP-seq /fly-donors/ENCDO215ZWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36575/'], '@type': ['Target', 'Item'], 'name': 'Sox15-dmelanogaster', 'label': 'Sox15', '@id': '/targets/Sox15-dmelanogaster/', 'title': 'Sox15 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c12b858c-9028-4d7d-9749-6705dee1ce50', 'status': 'released'} dm3 2R 14199856 14219663 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 190171634 Kevin White, UChicago 571c57846576d5f60bb7687a3c1d0678 https://www.encodeproject.org/files/ENCFF470KES/@@download/ENCFF470KES.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/8c8a89bf-77f0-4b7f-88ea-ea7d4ff3665c/ENCFF470KES.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF731GVL bam bam alignments dm3 ENCSR439VUM Control ChIP-seq /fly-donors/ENCDO215ZWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36575/'], '@type': ['Target', 'Item'], 'name': 'Sox15-dmelanogaster', 'label': 'Sox15', '@id': '/targets/Sox15-dmelanogaster/', 'title': 'Sox15 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c12b858c-9028-4d7d-9749-6705dee1ce50', 'status': 'released'} dm3 2R 14199856 14219663 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 47 /files/ENCFF059UHX/, /files/ENCFF470KES/ 229441690 Kevin White, UChicago 5f02bea4600af479e083fbac423b4522 https://www.encodeproject.org/files/ENCFF731GVL/@@download/ENCFF731GVL.bam released s3://encode-public/2016/04/10/ccd27b23-0c11-4628-aab4-9511d39dd530/ENCFF731GVL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF217TDD bam bam alignments dm6 ENCSR439VUM Control ChIP-seq /fly-donors/ENCDO215ZWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36575/'], '@type': ['Target', 'Item'], 'name': 'Sox15-dmelanogaster', 'label': 'Sox15', '@id': '/targets/Sox15-dmelanogaster/', 'title': 'Sox15 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c12b858c-9028-4d7d-9749-6705dee1ce50', 'status': 'released'} dm3 2R 14199856 14219663 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF470KES/ 232882947 Kevin White, UChicago e660ef934b187a5982e67116ec021c82 https://www.encodeproject.org/files/ENCFF217TDD/@@download/ENCFF217TDD.bam released s3://encode-public/2016/04/22/f4726063-f3da-4877-af1b-11f9cccceda4/ENCFF217TDD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF230AYU bigWig bigWig read-depth normalized signal dm3 ENCSR439VUM Control ChIP-seq /fly-donors/ENCDO215ZWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36575/'], '@type': ['Target', 'Item'], 'name': 'Sox15-dmelanogaster', 'label': 'Sox15', '@id': '/targets/Sox15-dmelanogaster/', 'title': 'Sox15 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c12b858c-9028-4d7d-9749-6705dee1ce50', 'status': 'released'} dm3 2R 14199856 14219663 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF731GVL/ 14968850 Kevin White, UChicago 4759d30572ed1d61436936bb05e47dca https://www.encodeproject.org/files/ENCFF230AYU/@@download/ENCFF230AYU.bigWig released s3://encode-public/2016/06/21/ca9f49fb-383f-40df-8fb2-20539ea7fa54/ENCFF230AYU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF533NKG bigWig bigWig signal of unique reads dm3 ENCSR439VUM Control ChIP-seq /fly-donors/ENCDO215ZWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36575/'], '@type': ['Target', 'Item'], 'name': 'Sox15-dmelanogaster', 'label': 'Sox15', '@id': '/targets/Sox15-dmelanogaster/', 'title': 'Sox15 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c12b858c-9028-4d7d-9749-6705dee1ce50', 'status': 'released'} dm3 2R 14199856 14219663 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF731GVL/ 14970598 Kevin White, UChicago d0979976430df6a152c6a27b50cf6860 https://www.encodeproject.org/files/ENCFF533NKG/@@download/ENCFF533NKG.bigWig released s3://encode-public/2016/06/21/393ccd8e-5e69-4f15-87aa-cc33494a8350/ENCFF533NKG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF974TOE bigWig bigWig signal of unique reads dm6 ENCSR439VUM Control ChIP-seq /fly-donors/ENCDO215ZWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36575/'], '@type': ['Target', 'Item'], 'name': 'Sox15-dmelanogaster', 'label': 'Sox15', '@id': '/targets/Sox15-dmelanogaster/', 'title': 'Sox15 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c12b858c-9028-4d7d-9749-6705dee1ce50', 'status': 'released'} dm3 2R 14199856 14219663 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF217TDD/ 17011802 Kevin White, UChicago f568c93827921abfa79f27c973363608 https://www.encodeproject.org/files/ENCFF974TOE/@@download/ENCFF974TOE.bigWig released s3://encode-public/2016/06/21/14d889d2-1227-417d-9ceb-d7498dc07260/ENCFF974TOE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF780CMP bigWig bigWig read-depth normalized signal dm6 ENCSR439VUM Control ChIP-seq /fly-donors/ENCDO215ZWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36575/'], '@type': ['Target', 'Item'], 'name': 'Sox15-dmelanogaster', 'label': 'Sox15', '@id': '/targets/Sox15-dmelanogaster/', 'title': 'Sox15 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c12b858c-9028-4d7d-9749-6705dee1ce50', 'status': 'released'} dm3 2R 14199856 14219663 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF217TDD/ 17020863 Kevin White, UChicago c51a3102533b0d214a3ada945bb87712 https://www.encodeproject.org/files/ENCFF780CMP/@@download/ENCFF780CMP.bigWig released s3://encode-public/2016/06/21/60ede2df-3412-4c13-a84e-da342def45e0/ENCFF780CMP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF990OOA fastq fastq reads ENCSR268KJF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:SOX13'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9580/'], '@type': ['Target', 'Item'], 'label': 'SOX13', 'title': 'SOX13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef60a6b0-de22-4a8f-a560-35a8acaf6f25', 'schema_version': '14', 'name': 'SOX13-human', '@id': '/targets/SOX13-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF120WGC/ 2889380902 Michael Snyder, Stanford b12c04a2b8f6cac272a4951a80432daf https://www.encodeproject.org/files/ENCFF990OOA/@@download/ENCFF990OOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/b0b1afe9-0e10-4001-b3f9-49a80df3862f/ENCFF990OOA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF120WGC fastq fastq reads ENCSR268KJF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:SOX13'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9580/'], '@type': ['Target', 'Item'], 'label': 'SOX13', 'title': 'SOX13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef60a6b0-de22-4a8f-a560-35a8acaf6f25', 'schema_version': '14', 'name': 'SOX13-human', '@id': '/targets/SOX13-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF990OOA/ 2474778928 Michael Snyder, Stanford 407f743f0dbadb9487bf7c1740c7c0ab https://www.encodeproject.org/files/ENCFF120WGC/@@download/ENCFF120WGC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/7fa369f3-a84b-475c-a8c7-2f6e2b5a0bbe/ENCFF120WGC.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF810UPH bam bam alignments GRCh38 ENCSR268KJF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:SOX13'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9580/'], '@type': ['Target', 'Item'], 'label': 'SOX13', 'title': 'SOX13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 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characterization ENCFF178JRR bam bam alignments ce10 ENCSR332VYA Control ChIP-seq /worm-donors/ENCDO519IAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187454/'], '@type': ['Target', 'Item'], 'name': 'pha-2-celegans', 'label': 'pha-2', '@id': '/targets/pha-2-celegans/', 'title': 'pha-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e5ae75c-0231-4daf-980d-da19436e4caa', 'status': 'released'} ce11 X 607246 644216 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF092ZCX/ 1078779298 Kevin White, UChicago 76978cecc9a100c5f0398e0d4559528a https://www.encodeproject.org/files/ENCFF178JRR/@@download/ENCFF178JRR.bam released s3://encode-public/2017/10/06/3d23d297-19d2-46c7-b400-672a5f18ea90/ENCFF178JRR.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF305SNT bam bam alignments ce11 ENCSR332VYA Control ChIP-seq /worm-donors/ENCDO519IAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187454/'], '@type': ['Target', 'Item'], 'name': 'pha-2-celegans', 'label': 'pha-2', '@id': '/targets/pha-2-celegans/', 'title': 'pha-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e5ae75c-0231-4daf-980d-da19436e4caa', 'status': 'released'} ce11 X 607246 644216 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF092ZCX/ 1079686886 Kevin White, UChicago 0ee339c6f3d14795c2be6de5e69227cf https://www.encodeproject.org/files/ENCFF305SNT/@@download/ENCFF305SNT.bam released s3://encode-public/2017/10/07/db7f2f10-0235-494a-be97-402e4ec98225/ENCFF305SNT.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF003YVG bigWig bigWig read-depth normalized signal ce10 ENCSR332VYA Control ChIP-seq /worm-donors/ENCDO519IAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187454/'], '@type': ['Target', 'Item'], 'name': 'pha-2-celegans', 'label': 'pha-2', '@id': '/targets/pha-2-celegans/', 'title': 'pha-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e5ae75c-0231-4daf-980d-da19436e4caa', 'status': 'released'} ce11 X 607246 644216 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF178JRR/ 10032260 Kevin White, UChicago 9586029e7fe7fa79126be245b5ca3571 https://www.encodeproject.org/files/ENCFF003YVG/@@download/ENCFF003YVG.bigWig released s3://encode-public/2017/10/09/8bd69e1e-6544-479f-904e-6c8b1bc837e0/ENCFF003YVG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF875IJK bigWig bigWig signal of unique reads ce10 ENCSR332VYA Control ChIP-seq /worm-donors/ENCDO519IAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187454/'], '@type': ['Target', 'Item'], 'name': 'pha-2-celegans', 'label': 'pha-2', '@id': '/targets/pha-2-celegans/', 'title': 'pha-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e5ae75c-0231-4daf-980d-da19436e4caa', 'status': 'released'} ce11 X 607246 644216 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF178JRR/ 10021129 Kevin White, UChicago e5c44d3746f27cab30b29eaed7e5b253 https://www.encodeproject.org/files/ENCFF875IJK/@@download/ENCFF875IJK.bigWig released s3://encode-public/2017/10/09/e9a5f99d-03bf-4a33-abe3-a251dcb5561e/ENCFF875IJK.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF693OWD bigWig bigWig signal of unique reads ce11 ENCSR332VYA Control ChIP-seq /worm-donors/ENCDO519IAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187454/'], '@type': ['Target', 'Item'], 'name': 'pha-2-celegans', 'label': 'pha-2', '@id': '/targets/pha-2-celegans/', 'title': 'pha-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e5ae75c-0231-4daf-980d-da19436e4caa', 'status': 'released'} ce11 X 607246 644216 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF305SNT/ 10018977 Kevin White, UChicago c0bd36b335bf52d2904db87ff7449049 https://www.encodeproject.org/files/ENCFF693OWD/@@download/ENCFF693OWD.bigWig released s3://encode-public/2017/10/09/06bdc747-c03a-4bad-92b4-e2dc4b6d6a25/ENCFF693OWD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF239MJZ bigWig bigWig read-depth normalized signal ce11 ENCSR332VYA Control ChIP-seq /worm-donors/ENCDO519IAG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187454/'], '@type': ['Target', 'Item'], 'name': 'pha-2-celegans', 'label': 'pha-2', '@id': '/targets/pha-2-celegans/', 'title': 'pha-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription 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https://www.encodeproject.org/files/ENCFF230LOE/@@download/ENCFF230LOE.bam released s3://encode-public/2020/10/08/16848ca8-16bc-4eb1-b78e-181884cda2b8/ENCFF230LOE.bam ENCODE4 v1.5.1 mm10 released ENCFF837KOM bam bam alignments mm10 ENCSR687ALB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF524CAC/ 2379094711 ENCODE Processing Pipeline 0ad3585137bc3e1ada8f8b78f5a53529 https://www.encodeproject.org/files/ENCFF837KOM/@@download/ENCFF837KOM.bam released s3://encode-public/2020/10/08/f9c68c66-19df-42bf-bb16-1d11f3cc90ec/ENCFF837KOM.bam ENCODE4 v1.5.1 mm10 released ENCFF152APS fastq fastq reads ENCSR320VBK Control ChIP-seq /worm-donors/ENCDO161MAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 726913590 Kevin White, UChicago 055776274c6164503d880ffecef45530 https://www.encodeproject.org/files/ENCFF152APS/@@download/ENCFF152APS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/2dcd5e78-6c17-46b0-bba4-5f82340653a8/ENCFF152APS.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF164AEV bam bam alignments ce10 ENCSR320VBK Control ChIP-seq /worm-donors/ENCDO161MAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF152APS/ 1036027463 Kevin White, UChicago 1ec37d26ffbf92fae7b9f7336471bb45 https://www.encodeproject.org/files/ENCFF164AEV/@@download/ENCFF164AEV.bam released s3://encode-public/2015/08/19/99e87b9b-3d20-486b-bf94-cec87c88bf86/ENCFF164AEV.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF111KSW bigWig bigWig read-depth normalized signal ce10 ENCSR320VBK Control ChIP-seq /worm-donors/ENCDO161MAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF164AEV/ 10015941 Kevin White, UChicago 09a1259d79497578906fad489db3a9bb https://www.encodeproject.org/files/ENCFF111KSW/@@download/ENCFF111KSW.bigWig released s3://encode-public/2015/10/02/d9650eb7-a939-4580-b24c-164e20bec5df/ENCFF111KSW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF046JIV bigWig bigWig signal of unique reads ce10 ENCSR320VBK Control ChIP-seq /worm-donors/ENCDO161MAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF164AEV/ 9979722 Kevin White, UChicago 5bb6330b7e84d16f154de830af4ff948 https://www.encodeproject.org/files/ENCFF046JIV/@@download/ENCFF046JIV.bigWig released s3://encode-public/2015/10/02/90a8e9e1-0e33-4862-acf6-b57f6bdbb439/ENCFF046JIV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF318QLA bam bam alignments ce11 ENCSR320VBK Control ChIP-seq /worm-donors/ENCDO161MAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF152APS/ 1036924539 Kevin White, UChicago a7b57b072d9c2d2cc35ce74319a98ebb https://www.encodeproject.org/files/ENCFF318QLA/@@download/ENCFF318QLA.bam released s3://encode-public/2016/01/17/ef6cb375-d33c-46c9-b73f-bee7205af075/ENCFF318QLA.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF082RVS bigWig bigWig signal of unique reads ce11 ENCSR320VBK Control ChIP-seq /worm-donors/ENCDO161MAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF318QLA/ 9976875 Kevin White, UChicago a9f55ebcf3cae021827b7974e0128d8e https://www.encodeproject.org/files/ENCFF082RVS/@@download/ENCFF082RVS.bigWig released s3://encode-public/2016/02/03/86053372-97ce-411b-85ae-fa3863245fc7/ENCFF082RVS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF075OHX bigWig bigWig read-depth normalized signal ce11 ENCSR320VBK Control ChIP-seq /worm-donors/ENCDO161MAL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF318QLA/ 10005678 Kevin White, UChicago 67b8380b9b6920586add821a0c28dda8 https://www.encodeproject.org/files/ENCFF075OHX/@@download/ENCFF075OHX.bigWig released s3://encode-public/2016/02/03/3eefb4b6-f629-4e6a-9e5b-861060970cd3/ENCFF075OHX.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF805HJM bam bam unfiltered alignments GRCh38 ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF110MCL/, /files/ENCFF618IFR/, /files/ENCFF647ACK/, /files/ENCFF186NYZ/ 2538692822 ENCODE Processing Pipeline 4c7f5bf2d0f042596ddacec81f5e1358 https://www.encodeproject.org/files/ENCFF805HJM/@@download/ENCFF805HJM.bam released s3://encode-public/2020/10/08/de6d556a-6f22-41c1-8947-eacdd94bce40/ENCFF805HJM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF748QEI bam bam alignments GRCh38 ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF110MCL/, /files/ENCFF618IFR/, /files/ENCFF647ACK/, /files/ENCFF186NYZ/ 1963880843 ENCODE Processing Pipeline 83fbf0f28f6542d8dccee2714db27cd6 https://www.encodeproject.org/files/ENCFF748QEI/@@download/ENCFF748QEI.bam released s3://encode-public/2020/10/08/ccc1a4e4-c968-42b5-970c-244fffd82443/ENCFF748QEI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF186NYZ fastq fastq reads ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 1061833965 Zhiping Weng, UMass 152f15192b4df1e9390be5822434534e SRA:SRR787510 https://www.encodeproject.org/files/ENCFF186NYZ/@@download/ENCFF186NYZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/25/17319832-1e06-4585-9225-ce59ada8d190/ENCFF186NYZ.fastq.gz low read length ENCFF647ACK fastq fastq reads ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 1034614780 Zhiping Weng, UMass 2ba44b2a7daed1ca41c0eccd8bc53cf0 SRA:SRR787512 https://www.encodeproject.org/files/ENCFF647ACK/@@download/ENCFF647ACK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/25/d5b95c39-1364-4047-aef8-7ca45768f087/ENCFF647ACK.fastq.gz low read length ENCFF618IFR fastq fastq reads ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 191864 Zhiping Weng, UMass eaed6cf764ce9e9498c067d9a64af9f5 SRA:SRR787511 https://www.encodeproject.org/files/ENCFF618IFR/@@download/ENCFF618IFR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/6980fe6f-9255-4860-a082-cebcad755a0f/ENCFF618IFR.fastq.gz low read length ENCFF283WRF bam bam unfiltered alignments GRCh38 ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF643CGH/, /files/ENCFF618IFR/, /files/ENCFF186NYZ/, /files/ENCFF647ACK/ 2613836837 ENCODE Processing Pipeline f0ffd9caaa9b606e450082daab447bac https://www.encodeproject.org/files/ENCFF283WRF/@@download/ENCFF283WRF.bam released s3://encode-public/2016/12/19/2e2dc84a-91a2-4a81-99de-fcf772900a22/ENCFF283WRF.bam ENCODE3 GRCh38 archived low read length ENCFF755ZQH bam bam unfiltered alignments hg19 ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF618IFR/, /files/ENCFF186NYZ/, /files/ENCFF647ACK/ 2598357396 ENCODE Processing Pipeline 64c80dd7b18c6d9b60b74383d30464f2 https://www.encodeproject.org/files/ENCFF755ZQH/@@download/ENCFF755ZQH.bam released s3://encode-public/2016/12/19/3053acbb-346c-46f8-a148-07ff9e60885b/ENCFF755ZQH.bam ENCODE3 hg19 archived low read length ENCFF534JYG bam bam alignments GRCh38 ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF643CGH/, /files/ENCFF618IFR/, /files/ENCFF186NYZ/, /files/ENCFF647ACK/ 1811830816 ENCODE Processing Pipeline de3adce8f4b9ac084c0f9f240f0ee7aa https://www.encodeproject.org/files/ENCFF534JYG/@@download/ENCFF534JYG.bam released s3://encode-public/2016/12/19/e105315b-3c73-4d0e-a937-6f790b8ea4cd/ENCFF534JYG.bam ENCODE3 GRCh38 archived low read length ENCFF052BHL bam bam alignments hg19 ENCSR247BVB Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF618IFR/, /files/ENCFF186NYZ/, /files/ENCFF647ACK/ 1812265523 ENCODE Processing Pipeline a1940e7394ffeb39b478ec4c94b8f518 https://www.encodeproject.org/files/ENCFF052BHL/@@download/ENCFF052BHL.bam released s3://encode-public/2016/12/19/20824869-b8b4-4cfe-b728-53616bd23762/ENCFF052BHL.bam ENCODE3 hg19 archived low read length ENCFF769KWF fastq fastq reads ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF967IDB/ 2866863382 Michael Snyder, Stanford 6f13c0b6e0cf05a90b120a8cb6e5e592 SRA:SRR5112155 https://www.encodeproject.org/files/ENCFF769KWF/@@download/ENCFF769KWF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/1a3f0175-7ce7-4ae2-bf45-3f9dd95580ce/ENCFF769KWF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF967IDB fastq fastq reads ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF769KWF/ 2905644303 Michael Snyder, Stanford 4295b7b518da8ee3b1537ce8ac1a6f79 SRA:SRR5112155 https://www.encodeproject.org/files/ENCFF967IDB/@@download/ENCFF967IDB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/458da504-a5d3-443d-8246-2ff2795bfce8/ENCFF967IDB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF856SYG bam bam unfiltered alignments GRCh38 ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF967IDB/, /files/ENCFF643CGH/, /files/ENCFF769KWF/ 5826356939 ENCODE Processing Pipeline de3e1d627a0a784adbda9956260c5044 https://www.encodeproject.org/files/ENCFF856SYG/@@download/ENCFF856SYG.bam released s3://encode-public/2016/09/11/17d3afd8-111a-45e3-9807-18e9a7e60a40/ENCFF856SYG.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF286SJX bam bam unfiltered alignments hg19 ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF967IDB/, /files/ENCFF807MUK/, /files/ENCFF769KWF/ 5818549632 ENCODE Processing Pipeline 7032c96087b5f78165587e02c8bc4011 https://www.encodeproject.org/files/ENCFF286SJX/@@download/ENCFF286SJX.bam released s3://encode-public/2016/09/11/d4f11805-41b2-40c6-ab69-ec0256878cac/ENCFF286SJX.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF437APX bam bam alignments GRCh38 ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF967IDB/, /files/ENCFF643CGH/, /files/ENCFF769KWF/ 5033813982 ENCODE Processing Pipeline 6771443f1524c0bb0b9c7f8cba23a653 https://www.encodeproject.org/files/ENCFF437APX/@@download/ENCFF437APX.bam released s3://encode-public/2016/09/11/97fe32ec-e01a-4eba-9643-c84d38c6e726/ENCFF437APX.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF842HFI bam bam alignments hg19 ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF967IDB/, /files/ENCFF807MUK/, /files/ENCFF769KWF/ 5031392634 ENCODE Processing Pipeline 70cca336182e305fb05e2cce433d392c https://www.encodeproject.org/files/ENCFF842HFI/@@download/ENCFF842HFI.bam released s3://encode-public/2016/09/11/e91c402b-1c2b-451b-8582-51a6d2637e45/ENCFF842HFI.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF201MNC bam bam unfiltered alignments GRCh38 ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF769KWF/, /files/ENCFF967IDB/ 5897247593 ENCODE Processing Pipeline 3ba17cd20abb5fc7a4633900c9f18a93 https://www.encodeproject.org/files/ENCFF201MNC/@@download/ENCFF201MNC.bam released s3://encode-public/2020/06/02/592ea955-7a88-48d2-81ba-532ca20083fd/ENCFF201MNC.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF528DFI bam bam alignments GRCh38 ENCSR851FFP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121536/'], '@type': ['Target', 'Item'], 'name': 'AEBP2-human', 'label': 'AEBP2', '@id': '/targets/AEBP2-human/', 'title': 'AEBP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5e01fbf7-84c6-4313-83a2-c4191ea7fef7', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF769KWF/, /files/ENCFF967IDB/ 5039343030 ENCODE Processing Pipeline ac7886c420388c332c875a860847975e https://www.encodeproject.org/files/ENCFF528DFI/@@download/ENCFF528DFI.bam released s3://encode-public/2020/06/02/6a579f82-72af-4e4e-bc2c-db12ec16ca4e/ENCFF528DFI.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF545TWO fastq fastq reads ENCSR620OAL Control ChIP-seq /worm-donors/ENCDO981DOF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172928/'], '@type': ['Target', 'Item'], 'name': 'F37D6.2-celegans', 'label': 'F37D6.2', '@id': '/targets/F37D6.2-celegans/', 'title': 'F37D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '26c417e0-fbbc-40ac-bec3-51c0fcd359fd', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 476274288 Kevin White, UChicago fb2948a97cb9250708a07bec4f34122f https://www.encodeproject.org/files/ENCFF545TWO/@@download/ENCFF545TWO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/633aa3e7-da1e-496b-a4c7-1e33d2d51d93/ENCFF545TWO.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF116NTI bam bam alignments ce10 ENCSR620OAL Control ChIP-seq /worm-donors/ENCDO981DOF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172928/'], '@type': ['Target', 'Item'], 'name': 'F37D6.2-celegans', 'label': 'F37D6.2', '@id': '/targets/F37D6.2-celegans/', 'title': 'F37D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '26c417e0-fbbc-40ac-bec3-51c0fcd359fd', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF545TWO/ 683913496 Kevin White, UChicago 2b40cf8101265239fd533f82f8513d42 https://www.encodeproject.org/files/ENCFF116NTI/@@download/ENCFF116NTI.bam released s3://encode-public/2015/08/19/ea09d188-8c0c-4c28-bab2-8d842b09777b/ENCFF116NTI.bam Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF690WOD bigWig bigWig read-depth normalized signal ce10 ENCSR620OAL Control ChIP-seq /worm-donors/ENCDO981DOF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172928/'], '@type': ['Target', 'Item'], 'name': 'F37D6.2-celegans', 'label': 'F37D6.2', '@id': '/targets/F37D6.2-celegans/', 'title': 'F37D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '26c417e0-fbbc-40ac-bec3-51c0fcd359fd', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF116NTI/ 9985902 Kevin White, UChicago 4b6b995bcb0268e8cb1ab136c43d76c5 https://www.encodeproject.org/files/ENCFF690WOD/@@download/ENCFF690WOD.bigWig released s3://encode-public/2015/10/02/65eca0b8-d97c-4242-8c95-ed684f3a3dc5/ENCFF690WOD.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF450ANM bigWig bigWig signal of unique reads ce10 ENCSR620OAL Control ChIP-seq /worm-donors/ENCDO981DOF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172928/'], '@type': ['Target', 'Item'], 'name': 'F37D6.2-celegans', 'label': 'F37D6.2', '@id': '/targets/F37D6.2-celegans/', 'title': 'F37D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '26c417e0-fbbc-40ac-bec3-51c0fcd359fd', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF116NTI/ 9956950 Kevin White, UChicago ebb16212b98db991d8d5d117c352efcc https://www.encodeproject.org/files/ENCFF450ANM/@@download/ENCFF450ANM.bigWig released s3://encode-public/2015/10/02/3667aa64-6969-415c-a173-9991d13bbfcd/ENCFF450ANM.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF631VYN bam bam alignments ce11 ENCSR620OAL Control ChIP-seq /worm-donors/ENCDO981DOF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172928/'], '@type': ['Target', 'Item'], 'name': 'F37D6.2-celegans', 'label': 'F37D6.2', '@id': '/targets/F37D6.2-celegans/', 'title': 'F37D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '26c417e0-fbbc-40ac-bec3-51c0fcd359fd', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF545TWO/ 684497484 Kevin White, UChicago ddc6c05e3839d93fe90a366529cf3b15 https://www.encodeproject.org/files/ENCFF631VYN/@@download/ENCFF631VYN.bam released s3://encode-public/2016/01/16/3e429dac-9c64-406d-a3a3-f06d8cb4bb9a/ENCFF631VYN.bam Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF039FOM bigWig bigWig signal of unique reads ce11 ENCSR620OAL Control ChIP-seq /worm-donors/ENCDO981DOF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172928/'], '@type': ['Target', 'Item'], 'name': 'F37D6.2-celegans', 'label': 'F37D6.2', '@id': '/targets/F37D6.2-celegans/', 'title': 'F37D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '26c417e0-fbbc-40ac-bec3-51c0fcd359fd', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF631VYN/ 9954325 Kevin White, UChicago 43db7a65fb7de38330335fd6b75cb406 https://www.encodeproject.org/files/ENCFF039FOM/@@download/ENCFF039FOM.bigWig released s3://encode-public/2016/02/03/ba7e1860-838a-40a3-9817-0e65848515d1/ENCFF039FOM.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF952TOF bigWig bigWig read-depth normalized signal ce11 ENCSR620OAL Control ChIP-seq /worm-donors/ENCDO981DOF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172928/'], '@type': ['Target', 'Item'], 'name': 'F37D6.2-celegans', 'label': 'F37D6.2', '@id': '/targets/F37D6.2-celegans/', 'title': 'F37D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '26c417e0-fbbc-40ac-bec3-51c0fcd359fd', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF631VYN/ 9982122 Kevin White, UChicago d4d85c77a115f2d26cea6273459ff31a https://www.encodeproject.org/files/ENCFF952TOF/@@download/ENCFF952TOF.bigWig released s3://encode-public/2016/02/03/280c3a43-eaf6-4b27-91a0-ef9dd5fcea54/ENCFF952TOF.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF275UYN bam bam alignments mm10-minimal ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF806TVZ/, /files/ENCFF523IZM/, /files/ENCFF554IHG/ 2350905097 ENCODE Processing Pipeline 6f22b64c48f8d630b70f4b4929fd72ca https://www.encodeproject.org/files/ENCFF275UYN/@@download/ENCFF275UYN.bam archived s3://encode-public/2015/06/24/0f86afec-8932-410b-a65e-ce0a4eb845bb/ENCFF275UYN.bam ENCFF523IZM fastq fastq reads ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 749088449 Bing Ren, UCSD e6e2a74ef63f208a223fee9dc262152f SRA:SRR3651584 https://www.encodeproject.org/files/ENCFF523IZM/@@download/ENCFF523IZM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/26fdf26d-d6c4-451e-ac80-0c2991dc7e3b/ENCFF523IZM.fastq.gz ENCFF554IHG fastq fastq reads ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2028786848 Bing Ren, UCSD 72724d710dc692965d283638a91f0fe4 SRA:SRR3651585 https://www.encodeproject.org/files/ENCFF554IHG/@@download/ENCFF554IHG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/8f7a0853-0afa-479e-94e8-10d2e1b9970c/ENCFF554IHG.fastq.gz ENCFF983QZJ fastq fastq reads ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2265845838 Bing Ren, UCSD eeaafc87ed00c7d13d9b12b630efa0fe SRA:SRR3651587 https://www.encodeproject.org/files/ENCFF983QZJ/@@download/ENCFF983QZJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/2931e1b3-5382-49fe-b5c0-4836fbf4b9ec/ENCFF983QZJ.fastq.gz ENCFF301ZSF bam bam alignments mm10-minimal ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF983QZJ/, /files/ENCFF806TVZ/ 1948855467 ENCODE Processing Pipeline 92841a8ae4f0b21b0d125e587b0a1af8 https://www.encodeproject.org/files/ENCFF301ZSF/@@download/ENCFF301ZSF.bam archived s3://encode-public/2015/06/24/6b421906-f71f-4a31-b3ff-1e54d0a0a16d/ENCFF301ZSF.bam ENCFF323RQH fastq fastq reads ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 361850994 Bing Ren, UCSD 800c76d64715d08cfd4faefad9904840 SRA:SRR3651586 https://www.encodeproject.org/files/ENCFF323RQH/@@download/ENCFF323RQH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/d84fb76d-b0ea-4357-8aa6-cb5e11af37a9/ENCFF323RQH.fastq.gz ENCFF037ZIA fastq fastq reads ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 719662854 Bing Ren, UCSD 4f32149022fe9ebd405f497a691b2e9c SRA:SRR3651588 https://www.encodeproject.org/files/ENCFF037ZIA/@@download/ENCFF037ZIA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/af0b2aa5-dc4b-4fe0-9bfd-763824edee27/ENCFF037ZIA.fastq.gz ENCFF036NBH bam bam unfiltered alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF983QZJ/, /files/ENCFF018NEO/, /files/ENCFF037ZIA/ 3845492793 ENCODE Processing Pipeline be4003c45bce49a13c5859976a56985d https://www.encodeproject.org/files/ENCFF036NBH/@@download/ENCFF036NBH.bam released s3://encode-public/2016/07/18/120310eb-e42e-4e6f-980a-12ac7d6d127b/ENCFF036NBH.bam ENCODE3 mm10 archived ENCFF231HNB bam bam alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF983QZJ/, /files/ENCFF018NEO/, /files/ENCFF037ZIA/ 2697520035 ENCODE Processing Pipeline e94466402afb8eb0ee0b964dbbbbb241 https://www.encodeproject.org/files/ENCFF231HNB/@@download/ENCFF231HNB.bam released s3://encode-public/2016/07/18/cf834480-a402-49d6-8e9c-b554652a44eb/ENCFF231HNB.bam ENCODE3 mm10 archived ENCFF939LLN bam bam unfiltered alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF323RQH/, /files/ENCFF018NEO/, /files/ENCFF523IZM/, /files/ENCFF554IHG/ 3958119712 ENCODE Processing Pipeline 31cdf9af763fd00520d890849dc4c029 https://www.encodeproject.org/files/ENCFF939LLN/@@download/ENCFF939LLN.bam released s3://encode-public/2016/07/18/0a9e8692-5dfd-4f9f-b293-d9a936381219/ENCFF939LLN.bam ENCODE3 mm10 archived ENCFF396QPU bam bam alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF323RQH/, /files/ENCFF018NEO/, /files/ENCFF523IZM/, /files/ENCFF554IHG/ 2749838403 ENCODE Processing Pipeline d7793e746925aca885a70d6e6e7a7eb7 https://www.encodeproject.org/files/ENCFF396QPU/@@download/ENCFF396QPU.bam released s3://encode-public/2016/07/18/8ea91b85-c23b-418b-82b3-d7df2e6849d7/ENCFF396QPU.bam ENCODE3 mm10 archived ENCFF937ZTF bam bam unfiltered alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF523IZM/, /files/ENCFF554IHG/, /files/ENCFF323RQH/, /files/ENCFF309GLL/ 3873045505 ENCODE Processing Pipeline 01c963375b96a5dd44219d9c9670aaff https://www.encodeproject.org/files/ENCFF937ZTF/@@download/ENCFF937ZTF.bam released s3://encode-public/2020/10/08/1ef89687-640f-4ffd-a121-a74d87d064c4/ENCFF937ZTF.bam ENCODE4 v1.5.1 mm10 released ENCFF452YUB bam bam unfiltered alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF983QZJ/, /files/ENCFF037ZIA/, /files/ENCFF309GLL/ 3743777290 ENCODE Processing Pipeline c0d8497867d8e95e1fd1d33e8fac9bf4 https://www.encodeproject.org/files/ENCFF452YUB/@@download/ENCFF452YUB.bam released s3://encode-public/2020/10/08/1de2d029-4531-4d41-8750-cd0434236645/ENCFF452YUB.bam ENCODE4 v1.5.1 mm10 released ENCFF389RGD bam bam alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF523IZM/, /files/ENCFF554IHG/, /files/ENCFF323RQH/, /files/ENCFF309GLL/ 2850191581 ENCODE Processing Pipeline b0b57c6346719c85b5a2173c51f44a82 https://www.encodeproject.org/files/ENCFF389RGD/@@download/ENCFF389RGD.bam released s3://encode-public/2020/10/08/ebe39fac-d292-4d37-a953-da56d18911ac/ENCFF389RGD.bam ENCODE4 v1.5.1 mm10 released ENCFF459JKO bam bam alignments mm10 ENCSR220PXJ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF983QZJ/, /files/ENCFF037ZIA/, /files/ENCFF309GLL/ 2782251092 ENCODE Processing Pipeline 12073e4026e61b85f906b2600900e75b https://www.encodeproject.org/files/ENCFF459JKO/@@download/ENCFF459JKO.bam released s3://encode-public/2020/10/08/ac2fb176-49e1-4ab4-b8cb-574bd8d8fa5f/ENCFF459JKO.bam ENCODE4 v1.5.1 mm10 released ENCFF970LUK fastq fastq reads ENCSR114LFX Control ChIP-seq /fly-donors/ENCDO314GPL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37935/'], '@type': ['Target', 'Item'], 'name': 'CG4707-dmelanogaster', 'label': 'CG4707', '@id': '/targets/CG4707-dmelanogaster/', 'title': 'CG4707 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4770cfc6-1e4a-445a-8f8e-e3063d331cc5', 'status': 'released'} dm3 2R 20483698 20504978 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 697701457 Kevin White, UChicago 09f9b93159fac1ef2f5dc5975d67821f https://www.encodeproject.org/files/ENCFF970LUK/@@download/ENCFF970LUK.fastq.gz Illumina HiSeq 4000 /files/ENCFF042HMR/ released s3://encode-public/2018/02/01/9fe731b3-b3ee-4435-be41-fbba0a6d690a/ENCFF970LUK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF494CLC bam bam alignments dm6 ENCSR114LFX Control ChIP-seq /fly-donors/ENCDO314GPL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37935/'], '@type': ['Target', 'Item'], 'name': 'CG4707-dmelanogaster', 'label': 'CG4707', '@id': '/targets/CG4707-dmelanogaster/', 'title': 'CG4707 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4770cfc6-1e4a-445a-8f8e-e3063d331cc5', 'status': 'released'} dm3 2R 20483698 20504978 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF970LUK/, /files/ENCFF479RCH/ 919780677 Kevin White, UChicago c1e40c325dcc15516822d1f0de629e80 https://www.encodeproject.org/files/ENCFF494CLC/@@download/ENCFF494CLC.bam released s3://encode-public/2018/02/02/e4c2e7a9-0c56-461d-a168-dbfaab73bbb3/ENCFF494CLC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF732YDH bigWig bigWig signal of unique reads dm6 ENCSR114LFX Control ChIP-seq /fly-donors/ENCDO314GPL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37935/'], '@type': ['Target', 'Item'], 'name': 'CG4707-dmelanogaster', 'label': 'CG4707', '@id': '/targets/CG4707-dmelanogaster/', 'title': 'CG4707 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4770cfc6-1e4a-445a-8f8e-e3063d331cc5', 'status': 'released'} dm3 2R 20483698 20504978 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF494CLC/ 17527870 Kevin White, UChicago 52d0539a1e2671ced9a59a98b396f5c0 https://www.encodeproject.org/files/ENCFF732YDH/@@download/ENCFF732YDH.bigWig released s3://encode-public/2018/02/02/f259e1ae-5d19-4e46-8166-3db0f21d63e6/ENCFF732YDH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF917BQO bigWig bigWig read-depth normalized signal dm6 ENCSR114LFX Control ChIP-seq /fly-donors/ENCDO314GPL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37935/'], '@type': ['Target', 'Item'], 'name': 'CG4707-dmelanogaster', 'label': 'CG4707', '@id': '/targets/CG4707-dmelanogaster/', 'title': 'CG4707 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4770cfc6-1e4a-445a-8f8e-e3063d331cc5', 'status': 'released'} dm3 2R 20483698 20504978 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF494CLC/ 17537424 Kevin White, UChicago c4ee7e6dab4704382d5f6e8fc66e7b53 https://www.encodeproject.org/files/ENCFF917BQO/@@download/ENCFF917BQO.bigWig released s3://encode-public/2018/02/02/1e0ac3f3-1db6-41a5-ae93-dd103e2fb3aa/ENCFF917BQO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF589QNO fastq fastq reads ENCSR010TXY Control ChIP-seq /fly-donors/ENCDO263ZHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40133/'], '@type': ['Target', 'Item'], 'name': 'ash1-dmelanogaster', 'label': 'ash1', '@id': '/targets/ash1-dmelanogaster/', 'title': 'ash1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '511809d2-1265-44a6-a3cd-71ee23edb0e5', 'status': 'released'} dm3 3L 19578938 19598279 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 603903898 Kevin White, UChicago 79b0314ca78e0dc8a234cf1b02601b2d https://www.encodeproject.org/files/ENCFF589QNO/@@download/ENCFF589QNO.fastq.gz Illumina HiSeq 4000 /files/ENCFF801KGF/ released s3://encode-public/2018/02/01/6106a8f9-90d1-414f-8f1f-25b210688f78/ENCFF589QNO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF244OSF bam bam alignments dm6 ENCSR010TXY Control ChIP-seq /fly-donors/ENCDO263ZHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40133/'], '@type': ['Target', 'Item'], 'name': 'ash1-dmelanogaster', 'label': 'ash1', '@id': '/targets/ash1-dmelanogaster/', 'title': 'ash1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '511809d2-1265-44a6-a3cd-71ee23edb0e5', 'status': 'released'} dm3 3L 19578938 19598279 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF589QNO/, /files/ENCFF479RCH/ 815706621 Kevin White, UChicago 4315da7f087162862b881d10d426e842 https://www.encodeproject.org/files/ENCFF244OSF/@@download/ENCFF244OSF.bam released s3://encode-public/2018/02/02/e8acc149-857d-43d0-b116-8331c588cc70/ENCFF244OSF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF085RGQ bigWig bigWig read-depth normalized signal dm6 ENCSR010TXY Control ChIP-seq /fly-donors/ENCDO263ZHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40133/'], '@type': ['Target', 'Item'], 'name': 'ash1-dmelanogaster', 'label': 'ash1', '@id': '/targets/ash1-dmelanogaster/', 'title': 'ash1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '511809d2-1265-44a6-a3cd-71ee23edb0e5', 'status': 'released'} dm3 3L 19578938 19598279 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF244OSF/ 17572825 Kevin White, UChicago d6ab832df2545ac027c6397d54d4eaba https://www.encodeproject.org/files/ENCFF085RGQ/@@download/ENCFF085RGQ.bigWig released s3://encode-public/2018/02/02/488df22b-345e-477f-abb0-aca8e8974e5e/ENCFF085RGQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF168SGM bigWig bigWig signal of unique reads dm6 ENCSR010TXY Control ChIP-seq /fly-donors/ENCDO263ZHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40133/'], '@type': ['Target', 'Item'], 'name': 'ash1-dmelanogaster', 'label': 'ash1', '@id': '/targets/ash1-dmelanogaster/', 'title': 'ash1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '511809d2-1265-44a6-a3cd-71ee23edb0e5', 'status': 'released'} dm3 3L 19578938 19598279 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF244OSF/ 17561218 Kevin White, UChicago af319a67e4c2348e95e69deeeeeff394 https://www.encodeproject.org/files/ENCFF168SGM/@@download/ENCFF168SGM.bigWig released s3://encode-public/2018/02/02/f428055a-c66c-41e7-8bbc-ff57570923a1/ENCFF168SGM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF140VVB fastq fastq reads ENCSR641PKP Control ChIP-seq /fly-donors/ENCDO019IVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41768/'], '@type': ['Target', 'Item'], 'name': 'CG7987-dmelanogaster', 'label': 'CG7987', '@id': '/targets/CG7987-dmelanogaster/', 'title': 'CG7987 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b024ac0-65d8-4b95-9a96-6e7f5db92309', 'status': 'released'} dm3 3R 10388834 10409164 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1015878961 Kevin White, UChicago df5ffa506a8f2c016b4058c991538de8 https://www.encodeproject.org/files/ENCFF140VVB/@@download/ENCFF140VVB.fastq.gz Illumina HiSeq 4000 /files/ENCFF589QNO/ released s3://encode-public/2018/02/01/4293185e-0c89-4559-b4e4-dc6b71baa078/ENCFF140VVB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF585VHE bam bam alignments dm6 ENCSR641PKP Control ChIP-seq /fly-donors/ENCDO019IVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41768/'], '@type': ['Target', 'Item'], 'name': 'CG7987-dmelanogaster', 'label': 'CG7987', '@id': '/targets/CG7987-dmelanogaster/', 'title': 'CG7987 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b024ac0-65d8-4b95-9a96-6e7f5db92309', 'status': 'released'} dm3 3R 10388834 10409164 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF140VVB/, /files/ENCFF479RCH/ 1377616712 Kevin White, UChicago a5d0b4fbf77c309c79569f04f957beb7 https://www.encodeproject.org/files/ENCFF585VHE/@@download/ENCFF585VHE.bam released s3://encode-public/2018/02/02/8cb642e3-ead3-408b-b7c1-c9c007cb0a67/ENCFF585VHE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF821HWZ bigWig bigWig signal of unique reads dm6 ENCSR641PKP Control ChIP-seq /fly-donors/ENCDO019IVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41768/'], '@type': ['Target', 'Item'], 'name': 'CG7987-dmelanogaster', 'label': 'CG7987', '@id': '/targets/CG7987-dmelanogaster/', 'title': 'CG7987 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b024ac0-65d8-4b95-9a96-6e7f5db92309', 'status': 'released'} dm3 3R 10388834 10409164 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF585VHE/ 17725354 Kevin White, UChicago 9e769e5b80cff142c4a8c48462ea3e7f https://www.encodeproject.org/files/ENCFF821HWZ/@@download/ENCFF821HWZ.bigWig released s3://encode-public/2018/02/02/7a89b097-c37d-40b1-8671-826a55d08fb5/ENCFF821HWZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF024QJH bigWig bigWig read-depth normalized signal dm6 ENCSR641PKP Control ChIP-seq /fly-donors/ENCDO019IVK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41768/'], '@type': ['Target', 'Item'], 'name': 'CG7987-dmelanogaster', 'label': 'CG7987', '@id': '/targets/CG7987-dmelanogaster/', 'title': 'CG7987 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b024ac0-65d8-4b95-9a96-6e7f5db92309', 'status': 'released'} dm3 3R 10388834 10409164 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF585VHE/ 17748510 Kevin White, UChicago 89fed5cda5704f7a018c8bf15c3d48d7 https://www.encodeproject.org/files/ENCFF024QJH/@@download/ENCFF024QJH.bigWig released s3://encode-public/2018/02/02/0c1549c5-1153-49b2-8919-40fe032dab3a/ENCFF024QJH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF095RXZ fastq fastq reads ENCSR496PAW Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 156364632 Kevin White, UChicago 8122a6e44b845016c284e3145f19064e https://www.encodeproject.org/files/ENCFF095RXZ/@@download/ENCFF095RXZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF483OAR/ released s3://encode-public/2015/07/30/7be032c0-ee6e-46d7-8d5f-e11e89ccbb6d/ENCFF095RXZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF312CTC bam bam alignments ce10 ENCSR496PAW Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF095RXZ/ 206172644 Kevin White, UChicago 39c269d60aa9f53b9f75400c8834a9b6 https://www.encodeproject.org/files/ENCFF312CTC/@@download/ENCFF312CTC.bam released s3://encode-public/2015/08/19/d5b67091-b4be-4883-ad3e-c8970eedf701/ENCFF312CTC.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF162XRF bigWig bigWig signal of unique reads ce10 ENCSR496PAW Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF312CTC/ 10046229 Kevin White, UChicago 0e796fe42e956f65740e1d0b73a291e5 https://www.encodeproject.org/files/ENCFF162XRF/@@download/ENCFF162XRF.bigWig released s3://encode-public/2015/10/02/f8481748-1e8e-4316-a866-667a63959943/ENCFF162XRF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF813SWV bigWig bigWig read-depth normalized signal ce10 ENCSR496PAW Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF312CTC/ 10060351 Kevin White, UChicago 61ff937b9831c37fc91033f897b3e534 https://www.encodeproject.org/files/ENCFF813SWV/@@download/ENCFF813SWV.bigWig released s3://encode-public/2015/10/02/47f1e5cb-077a-42cc-a8e7-8dbba94ff7cf/ENCFF813SWV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF671WVN bam bam alignments ce11 ENCSR496PAW Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF095RXZ/ 206414161 Kevin White, UChicago ecb924f3f53c2359c8d0430e39dc7c69 https://www.encodeproject.org/files/ENCFF671WVN/@@download/ENCFF671WVN.bam released s3://encode-public/2016/01/16/59843649-66b0-4016-8cb6-ddb94c16643c/ENCFF671WVN.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF683DVZ bigWig bigWig signal of unique reads ce11 ENCSR496PAW Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF671WVN/ 10041301 Kevin White, UChicago 102a306c9c282c6849256b743ffbe107 https://www.encodeproject.org/files/ENCFF683DVZ/@@download/ENCFF683DVZ.bigWig released s3://encode-public/2016/02/03/2131d19f-ee09-4ee2-b139-20e9e1b42219/ENCFF683DVZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF644ZPX bigWig bigWig read-depth normalized signal ce11 ENCSR496PAW Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF671WVN/ 10051401 Kevin White, UChicago 5541130816aab15c8af137fcc195bc6d https://www.encodeproject.org/files/ENCFF644ZPX/@@download/ENCFF644ZPX.bigWig released s3://encode-public/2016/02/03/fbeed7ba-ab8f-4c83-b462-087d45b4bc7e/ENCFF644ZPX.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF636FUZ fastq fastq reads ENCSR860ZFH Control ChIP-seq /fly-donors/ENCDO713PNS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43843/'], '@type': ['Target', 'Item'], 'name': 'fd102C-dmelanogaster', 'label': 'fd102C', '@id': '/targets/fd102C-dmelanogaster/', 'title': 'fd102C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f03c0a67-0fbf-45ad-a696-f70c7b7a658f', 'status': 'released'} dm3 4 832271 855494 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 882960613 Kevin White, UChicago 5c6b8b058a86442e683dad1978e92871 https://www.encodeproject.org/files/ENCFF636FUZ/@@download/ENCFF636FUZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF301GII/ released s3://encode-public/2018/02/01/d0f0b7b2-963f-49b7-8218-ed605f27393e/ENCFF636FUZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF964SAX bam bam alignments dm6 ENCSR860ZFH Control ChIP-seq /fly-donors/ENCDO713PNS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43843/'], '@type': ['Target', 'Item'], 'name': 'fd102C-dmelanogaster', 'label': 'fd102C', '@id': '/targets/fd102C-dmelanogaster/', 'title': 'fd102C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f03c0a67-0fbf-45ad-a696-f70c7b7a658f', 'status': 'released'} dm3 4 832271 855494 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF636FUZ/, /files/ENCFF479RCH/ 1182142247 Kevin White, UChicago 9ef7a55a16773ae987eed4e9cd898cda https://www.encodeproject.org/files/ENCFF964SAX/@@download/ENCFF964SAX.bam released s3://encode-public/2018/02/02/4d0e0b11-5cc3-43fd-93b7-71b1cf3f6655/ENCFF964SAX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF341CGV bigWig bigWig read-depth normalized signal dm6 ENCSR860ZFH Control ChIP-seq /fly-donors/ENCDO713PNS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43843/'], '@type': ['Target', 'Item'], 'name': 'fd102C-dmelanogaster', 'label': 'fd102C', '@id': '/targets/fd102C-dmelanogaster/', 'title': 'fd102C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f03c0a67-0fbf-45ad-a696-f70c7b7a658f', 'status': 'released'} dm3 4 832271 855494 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF964SAX/ 17710008 Kevin White, UChicago f237c01230da5d86cc79d850a181616e https://www.encodeproject.org/files/ENCFF341CGV/@@download/ENCFF341CGV.bigWig released s3://encode-public/2018/02/02/fdac82ff-8bbc-4765-b8cc-719afa171f80/ENCFF341CGV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF165VID bigWig bigWig signal of unique reads dm6 ENCSR860ZFH Control ChIP-seq /fly-donors/ENCDO713PNS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43843/'], '@type': ['Target', 'Item'], 'name': 'fd102C-dmelanogaster', 'label': 'fd102C', '@id': '/targets/fd102C-dmelanogaster/', 'title': 'fd102C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f03c0a67-0fbf-45ad-a696-f70c7b7a658f', 'status': 'released'} dm3 4 832271 855494 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF964SAX/ 17660878 Kevin White, UChicago 0fa8383466b882f882367c52589fd973 https://www.encodeproject.org/files/ENCFF165VID/@@download/ENCFF165VID.bigWig released s3://encode-public/2018/02/02/771b5216-3dc5-46a5-99b0-2a1148caf63f/ENCFF165VID.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF991MUX fastq fastq reads ENCSR604YZN Control ChIP-seq /fly-donors/ENCDO861HXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31802/'], '@type': ['Target', 'Item'], 'name': 'oc-dmelanogaster', 'label': 'oc', '@id': '/targets/oc-dmelanogaster/', 'title': 'oc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f949c9ce-a928-4c33-81c4-e50c9ebe33d0', 'status': 'released'} dm3 X 8490045 8579946 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 562208369 Kevin White, UChicago 745f19202ed131133edbe49cdfc2111b https://www.encodeproject.org/files/ENCFF991MUX/@@download/ENCFF991MUX.fastq.gz Illumina HiSeq 4000 /files/ENCFF633LEO/ released s3://encode-public/2018/09/18/192b090d-2895-48ec-85c6-fbfa7f0fad36/ENCFF991MUX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF606RKM bam bam alignments dm6 ENCSR604YZN Control ChIP-seq /fly-donors/ENCDO861HXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31802/'], '@type': ['Target', 'Item'], 'name': 'oc-dmelanogaster', 'label': 'oc', '@id': '/targets/oc-dmelanogaster/', 'title': 'oc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f949c9ce-a928-4c33-81c4-e50c9ebe33d0', 'status': 'released'} dm3 X 8490045 8579946 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF991MUX/, /files/ENCFF479RCH/ 725773748 Kevin White, UChicago 54f87fe3b8f316b1156d5b34fd58db63 https://www.encodeproject.org/files/ENCFF606RKM/@@download/ENCFF606RKM.bam released s3://encode-public/2018/09/19/b9af574f-c9cd-4547-9d69-10a820417c25/ENCFF606RKM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF540ROZ bigWig bigWig signal of unique reads dm6 ENCSR604YZN Control ChIP-seq /fly-donors/ENCDO861HXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31802/'], '@type': ['Target', 'Item'], 'name': 'oc-dmelanogaster', 'label': 'oc', '@id': '/targets/oc-dmelanogaster/', 'title': 'oc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f949c9ce-a928-4c33-81c4-e50c9ebe33d0', 'status': 'released'} dm3 X 8490045 8579946 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF606RKM/ 17610467 Kevin White, UChicago 0bf6627a1746576f19a4f68f96a91ddc https://www.encodeproject.org/files/ENCFF540ROZ/@@download/ENCFF540ROZ.bigWig released s3://encode-public/2018/09/19/7971316e-b397-4e1d-bee0-a23d73de146a/ENCFF540ROZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF724AVH bigWig bigWig read-depth normalized signal dm6 ENCSR604YZN Control ChIP-seq /fly-donors/ENCDO861HXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31802/'], '@type': ['Target', 'Item'], 'name': 'oc-dmelanogaster', 'label': 'oc', '@id': '/targets/oc-dmelanogaster/', 'title': 'oc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f949c9ce-a928-4c33-81c4-e50c9ebe33d0', 'status': 'released'} dm3 X 8490045 8579946 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF606RKM/ 17631647 Kevin White, UChicago 8056c1717a90dd4859e787ac9b08c53e https://www.encodeproject.org/files/ENCFF724AVH/@@download/ENCFF724AVH.bigWig released s3://encode-public/2018/09/19/0138aac2-3a05-4e53-8850-1bd9d885c157/ENCFF724AVH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF656UWM fastq fastq reads ENCSR583XAM Control ChIP-seq /human-donors/ENCDO799UNP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 838541972 Bradley Bernstein, Broad 91fed57a93af1c00f2b5b2f58097fe6f SRA:SRR13804080 https://www.encodeproject.org/files/ENCFF656UWM/@@download/ENCFF656UWM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/e72e85f6-e28c-4481-b6b6-a4376bd26a37/ENCFF656UWM.fastq.gz ENCFF027XSY fastq fastq reads ENCSR583XAM Control ChIP-seq /human-donors/ENCDO799UNP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 798038545 Bradley Bernstein, Broad 46dfa168790bbd167c664baa6ffcc483 SRA:SRR13804081 https://www.encodeproject.org/files/ENCFF027XSY/@@download/ENCFF027XSY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/bc34533e-3d83-4494-930a-5d35e67ce4d7/ENCFF027XSY.fastq.gz ENCFF442GKQ fastq fastq reads ENCSR583XAM Control ChIP-seq /human-donors/ENCDO799UNP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 967529003 Bradley Bernstein, Broad f89918f92c9acb1306ba53fa750598c2 SRA:SRR13804082 https://www.encodeproject.org/files/ENCFF442GKQ/@@download/ENCFF442GKQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/938f477b-6dc1-47b6-901d-60b8b9e71d22/ENCFF442GKQ.fastq.gz ENCFF686GZT fastq fastq reads ENCSR583XAM Control ChIP-seq /human-donors/ENCDO799UNP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 935274880 Bradley Bernstein, Broad cb12cc648b112eb22f80583b94ef4b00 SRA:SRR13804083 https://www.encodeproject.org/files/ENCFF686GZT/@@download/ENCFF686GZT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2020/07/02/50ea7902-0948-4c47-bc71-fbc1307aa735/ENCFF686GZT.fastq.gz ENCFF283ZVI bam bam unfiltered alignments GRCh38 ENCSR583XAM Control ChIP-seq /human-donors/ENCDO799UNP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF442GKQ/, /files/ENCFF656UWM/, /files/ENCFF027XSY/, /files/ENCFF686GZT/ 3443658554 ENCODE Processing Pipeline 40a4f5dd2dfda1d0106c904834d1a6a7 https://www.encodeproject.org/files/ENCFF283ZVI/@@download/ENCFF283ZVI.bam released s3://encode-public/2020/07/19/e846c928-0880-4d63-b441-e23bde9999ad/ENCFF283ZVI.bam ENCODE4 v1.5.0 GRCh38 released ENCFF007VMG bam bam alignments GRCh38 ENCSR583XAM Control ChIP-seq /human-donors/ENCDO799UNP/ UBERON:0001003 skin epidermis tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF442GKQ/, /files/ENCFF656UWM/, /files/ENCFF027XSY/, /files/ENCFF686GZT/ 2737926124 ENCODE Processing Pipeline 71163c5edc1d4b61168ca3b42ce43166 https://www.encodeproject.org/files/ENCFF007VMG/@@download/ENCFF007VMG.bam released s3://encode-public/2020/07/19/ec2883de-61a9-4f6d-8bab-d4fb4fce511f/ENCFF007VMG.bam ENCODE4 v1.5.0 GRCh38 released ENCFF431DYD tagAlign tagAlign alignments hg19 ENCSR574WQE Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF347MJY/ 129077324 Anshul Kundaje, Stanford d2c7f36ddb878dd15ffaa1e0e51b2723 https://www.encodeproject.org/files/ENCFF431DYD/@@download/ENCFF431DYD.tagAlign.gz archived s3://encode-public/2016/03/30/0addc410-c376-41d2-96a4-86ff1d85019b/ENCFF431DYD.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF347MJY fastq fastq reads ENCSR574WQE Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 1048278091 Zhiping Weng, UMass d92c917b09903e9563c2b5c2aee1747e SRA:SRR449627 https://www.encodeproject.org/files/ENCFF347MJY/@@download/ENCFF347MJY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/60e7fb4a-d441-4ebb-a7bc-8fc0c8544f9a/ENCFF347MJY.fastq.gz low read depth, low read length ENCFF295PUV bam bam unfiltered alignments GRCh38 ENCSR574WQE Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF347MJY/, /files/ENCFF110MCL/ 1253656705 ENCODE Processing Pipeline bd9829c7a3bfce25efc6f8f0da71c79e https://www.encodeproject.org/files/ENCFF295PUV/@@download/ENCFF295PUV.bam released s3://encode-public/2020/10/08/35e96419-57c6-4af1-a93e-83298d68c06c/ENCFF295PUV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF747NLU bam bam unfiltered alignments hg19 ENCSR574WQE Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF347MJY/, /files/ENCFF807MUK/ 1286861323 ENCODE Processing Pipeline 97ebdbf8db793520efaf42474f085ece https://www.encodeproject.org/files/ENCFF747NLU/@@download/ENCFF747NLU.bam released s3://encode-public/2016/12/19/df4b7a16-8f0a-46a7-8fb8-8efec8450421/ENCFF747NLU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF888PWH bam bam unfiltered alignments GRCh38 ENCSR574WQE Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF347MJY/, /files/ENCFF643CGH/ 1294279223 ENCODE Processing Pipeline 9a686d849d57e0339acfa86eb281bea7 https://www.encodeproject.org/files/ENCFF888PWH/@@download/ENCFF888PWH.bam released s3://encode-public/2016/12/19/6b1120b7-0206-441c-a22b-4a54fb1ce513/ENCFF888PWH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF855WEO bam bam alignments hg19 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alignments GRCh38 ENCSR574WQE Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF347MJY/, /files/ENCFF110MCL/ 864347905 ENCODE Processing Pipeline b7bbbe5e7df1b80c8b13c8553c77dc08 https://www.encodeproject.org/files/ENCFF342HMC/@@download/ENCFF342HMC.bam released s3://encode-public/2020/10/08/68327257-3bcd-4f2f-966a-bc470116cff0/ENCFF342HMC.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF770IYO fastq fastq reads ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1950258438 Zhiping Weng, UMass 45fac9d760daeecefa74aa07d5d86d1f SRA:SRR449619 https://www.encodeproject.org/files/ENCFF770IYO/@@download/ENCFF770IYO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/8965a20c-2b13-4dbf-9e4d-3f30ea8298ec/ENCFF770IYO.fastq.gz low read length ENCFF188POD fastq fastq reads ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1482483030 Zhiping Weng, UMass 68bedb3bde628c4e5f9e209fbe962794 SRA:SRR643657 https://www.encodeproject.org/files/ENCFF188POD/@@download/ENCFF188POD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/16fab935-a0e5-4683-a91e-70134074bd95/ENCFF188POD.fastq.gz low read length ENCFF712VBC bam bam alignments GRCh38 ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF770IYO/, /files/ENCFF110MCL/, /files/ENCFF188POD/ 2776598691 ENCODE Processing Pipeline cf0cb5243f075a283fcf7bd2c9328143 https://www.encodeproject.org/files/ENCFF712VBC/@@download/ENCFF712VBC.bam released s3://encode-public/2020/10/08/b201746f-67d9-47bc-afa5-30f88db9023a/ENCFF712VBC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF834JIN bam bam unfiltered alignments hg19 ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF770IYO/, /files/ENCFF188POD/, /files/ENCFF807MUK/ 4118673717 ENCODE Processing Pipeline 77ee42157093116c2a83c4d452ef752d https://www.encodeproject.org/files/ENCFF834JIN/@@download/ENCFF834JIN.bam released s3://encode-public/2016/12/19/ca33d2b1-ed01-4bf8-8580-beaf473331be/ENCFF834JIN.bam ENCODE3 hg19 archived low read length ENCFF791WOW bam bam unfiltered alignments GRCh38 ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF770IYO/, /files/ENCFF188POD/, /files/ENCFF643CGH/ 4141313081 ENCODE Processing Pipeline c33d70825c8a13d6b9b2c632380e2dfe https://www.encodeproject.org/files/ENCFF791WOW/@@download/ENCFF791WOW.bam released s3://encode-public/2016/12/19/6757b20c-22e0-4142-bf94-20a024a72665/ENCFF791WOW.bam ENCODE3 GRCh38 archived low read length ENCFF487EPL bam bam alignments GRCh38 ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF770IYO/, /files/ENCFF188POD/, /files/ENCFF643CGH/ 2521415261 ENCODE Processing Pipeline 9b4756c5f244d86945e323f2a55ec073 https://www.encodeproject.org/files/ENCFF487EPL/@@download/ENCFF487EPL.bam released s3://encode-public/2016/12/19/0c11f406-1511-48ea-b092-b4296257de40/ENCFF487EPL.bam ENCODE3 GRCh38 archived low read length ENCFF212ZJL bam bam alignments hg19 ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF770IYO/, /files/ENCFF188POD/, /files/ENCFF807MUK/ 2521632969 ENCODE Processing Pipeline 1e20385970b08ac628cad4f2dc5db57f https://www.encodeproject.org/files/ENCFF212ZJL/@@download/ENCFF212ZJL.bam released s3://encode-public/2016/12/19/a0042c11-8a9a-4f14-8790-bbd462bc65b3/ENCFF212ZJL.bam ENCODE3 hg19 archived low read length ENCFF041RWO bam bam unfiltered alignments GRCh38 ENCSR264DYL Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001255 urinary bladder tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF770IYO/, /files/ENCFF110MCL/, /files/ENCFF188POD/ 4019618450 ENCODE Processing Pipeline 96bdb2146781528bbc17e7d8202bad56 https://www.encodeproject.org/files/ENCFF041RWO/@@download/ENCFF041RWO.bam released s3://encode-public/2020/10/08/1f8865ae-986e-4a68-b968-10adbfed3236/ENCFF041RWO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF009YBG fastq fastq reads ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_2 50 single-ended 106074812 Kevin White, UChicago 7af293d19d43b6bcd212c307e12dfdec https://www.encodeproject.org/files/ENCFF009YBG/@@download/ENCFF009YBG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF594LOW/ released s3://encode-public/2015/07/30/78667758-862b-4f27-8955-069fbc22f38d/ENCFF009YBG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF988TRZ fastq fastq reads ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 144441396 Kevin White, UChicago d8dbb654276ffc3157075eab854966cf https://www.encodeproject.org/files/ENCFF988TRZ/@@download/ENCFF988TRZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF594LOW/ released s3://encode-public/2015/07/30/67aaa215-ce71-4385-aad0-db9900dcf77c/ENCFF988TRZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF684GDD bam bam alignments ce10 ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 32 /files/ENCFF987UMF/, /files/ENCFF009YBG/, /files/ENCFF988TRZ/ 329108102 Kevin White, UChicago f206863d0512a1bf674abaad6685d628 https://www.encodeproject.org/files/ENCFF684GDD/@@download/ENCFF684GDD.bam released s3://encode-public/2015/08/19/19fa3e18-79a8-4c01-bee9-96b1edc92b14/ENCFF684GDD.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF165NIX bigWig bigWig read-depth normalized signal ce10 ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 /files/ENCFF684GDD/ 10003415 Kevin White, UChicago a3fc0bed826d7ffac80582ff5d2d2e4f https://www.encodeproject.org/files/ENCFF165NIX/@@download/ENCFF165NIX.bigWig released s3://encode-public/2015/10/02/e90fca95-994b-4006-b218-4109859ecdca/ENCFF165NIX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF094EOC bigWig bigWig signal of unique reads ce10 ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 /files/ENCFF684GDD/ 10055787 Kevin White, UChicago 5add5d4e80e4d02024857e85d5e3927b https://www.encodeproject.org/files/ENCFF094EOC/@@download/ENCFF094EOC.bigWig released s3://encode-public/2015/10/02/6e2d74f1-6ebc-4e70-9e8c-e5a364b91938/ENCFF094EOC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF276RZO bam bam alignments ce11 ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 32 /files/ENCFF586MOL/, /files/ENCFF009YBG/, /files/ENCFF988TRZ/ 329487338 Kevin White, UChicago 58a44ad019e6dc13151b3608e02bd303 https://www.encodeproject.org/files/ENCFF276RZO/@@download/ENCFF276RZO.bam released s3://encode-public/2016/02/02/0d66afbc-4438-4547-bc72-f8c6d2ea63b2/ENCFF276RZO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF179GXU bigWig bigWig signal of unique reads ce11 ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 /files/ENCFF276RZO/ 10055851 Kevin White, UChicago f25243b159ee6863f87e9e57b9eefbf7 https://www.encodeproject.org/files/ENCFF179GXU/@@download/ENCFF179GXU.bigWig released s3://encode-public/2016/02/03/03bb6788-401f-4dd0-a4cc-f974054d2e16/ENCFF179GXU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF284NTO bigWig bigWig read-depth normalized signal ce11 ENCSR219ATU Control ChIP-seq /worm-donors/ENCDO201TBM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172219/'], '@type': ['Target', 'Item'], 'name': 'cey-2-celegans', 'label': 'cey-2', '@id': '/targets/cey-2-celegans/', 'title': 'cey-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b522b3b9-619d-4533-accf-c2325f978144', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 /files/ENCFF276RZO/ 10005841 Kevin White, UChicago e32bc28d0b494b8459f4aa67624c5037 https://www.encodeproject.org/files/ENCFF284NTO/@@download/ENCFF284NTO.bigWig released s3://encode-public/2016/02/03/44c9c124-d725-41f3-931a-c85821bc76e3/ENCFF284NTO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF266WQH fastq fastq reads ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF321ZBM/ 2955766649 Michael Snyder, Stanford a1f6f1ce8abc0d4513eda4fceae0f5e9 SRA:SRR6213982 https://www.encodeproject.org/files/ENCFF266WQH/@@download/ENCFF266WQH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/9a8d46ec-2652-4d4f-a263-9f8ca5a7ffee/ENCFF266WQH.fastq.gz mild to moderate bottlenecking ENCFF321ZBM fastq fastq reads ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF266WQH/ 3325325300 Michael Snyder, Stanford aa6011375888b433490d7a84143ce3e1 SRA:SRR6213982 https://www.encodeproject.org/files/ENCFF321ZBM/@@download/ENCFF321ZBM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/f0152c43-5125-480e-94ec-45a1033c7e0a/ENCFF321ZBM.fastq.gz mild to moderate bottlenecking ENCFF670HHP bam bam unfiltered alignments hg19 ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF266WQH/, /files/ENCFF321ZBM/ 5932150570 ENCODE Processing Pipeline 1aaefdef195fb27ed16b64561de4ca64 https://www.encodeproject.org/files/ENCFF670HHP/@@download/ENCFF670HHP.bam released s3://encode-public/2016/12/10/0635148b-36ba-4e17-baa6-cc591abe307f/ENCFF670HHP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF722MYF bam bam alignments hg19 ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF266WQH/, /files/ENCFF321ZBM/ 4732078346 ENCODE Processing Pipeline 3589048974d3d3ca7a2cb0a05c6c246d https://www.encodeproject.org/files/ENCFF722MYF/@@download/ENCFF722MYF.bam released s3://encode-public/2016/12/10/656bc644-5e25-41b5-9d8d-2f431f4373c7/ENCFF722MYF.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF925TIG bam bam unfiltered alignments GRCh38 ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF266WQH/, /files/ENCFF321ZBM/ 5941160120 ENCODE Processing Pipeline e62b1de628e883a7637a077990307654 https://www.encodeproject.org/files/ENCFF925TIG/@@download/ENCFF925TIG.bam released s3://encode-public/2016/12/10/4de7aac4-7f93-40cd-a890-0d9709ffd3d1/ENCFF925TIG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF543PTH bam bam alignments GRCh38 ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF266WQH/, /files/ENCFF321ZBM/ 4737232944 ENCODE Processing Pipeline aef3066d9bb63950ce808e6bad7fdd02 https://www.encodeproject.org/files/ENCFF543PTH/@@download/ENCFF543PTH.bam released s3://encode-public/2016/12/10/32280b0a-b4e5-4785-9a4d-85ec75d91840/ENCFF543PTH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF577EFO bam bam alignments GRCh38 ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF266WQH/, /files/ENCFF321ZBM/ 4621624293 ENCODE Processing Pipeline 99ddf58df2f52cdca556b44de542e625 https://www.encodeproject.org/files/ENCFF577EFO/@@download/ENCFF577EFO.bam released s3://encode-public/2020/06/02/f8284662-3613-4c71-9dc9-ab93915fcf93/ENCFF577EFO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF406VPP bam bam unfiltered alignments GRCh38 ENCSR915QUT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF266WQH/, /files/ENCFF321ZBM/ 5951087307 ENCODE Processing Pipeline fa55dabf954810e20ac691c5cd20fc83 https://www.encodeproject.org/files/ENCFF406VPP/@@download/ENCFF406VPP.bam released s3://encode-public/2020/06/02/b47e7765-1d1c-4c4c-b768-c065e4aeb7af/ENCFF406VPP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF474BWS fastq fastq reads ENCSR688FTD Control ChIP-seq /fly-donors/ENCDO792VRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43660/'], '@type': ['Target', 'Item'], 'name': 'CG12071-dmelanogaster', 'label': 'CG12071', '@id': '/targets/CG12071-dmelanogaster/', 'title': 'CG12071 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '81912a42-6184-47e4-a52d-b4d03f1696f2', 'status': 'released'} dm3 3R 30864877 30884178 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1211972563 Kevin White, UChicago 65b85a2e55f52725daddec8ea4fa3c1e https://www.encodeproject.org/files/ENCFF474BWS/@@download/ENCFF474BWS.fastq.gz Illumina HiSeq 4000 /files/ENCFF636FUZ/ released s3://encode-public/2018/02/01/e382f1eb-f0e6-4c74-87cd-86024bc20311/ENCFF474BWS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF879DBT bam bam alignments dm6 ENCSR688FTD Control ChIP-seq /fly-donors/ENCDO792VRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43660/'], '@type': ['Target', 'Item'], 'name': 'CG12071-dmelanogaster', 'label': 'CG12071', '@id': '/targets/CG12071-dmelanogaster/', 'title': 'CG12071 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '81912a42-6184-47e4-a52d-b4d03f1696f2', 'status': 'released'} dm3 3R 30864877 30884178 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF474BWS/, /files/ENCFF479RCH/ 1630046794 Kevin White, UChicago d5d2dc1298451760ed5d6f06d2a017e1 https://www.encodeproject.org/files/ENCFF879DBT/@@download/ENCFF879DBT.bam released s3://encode-public/2018/02/02/e3f89f31-a68a-4ada-ab94-8aa83d8fb758/ENCFF879DBT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF661GKK bigWig bigWig signal of unique reads dm6 ENCSR688FTD Control ChIP-seq /fly-donors/ENCDO792VRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43660/'], '@type': ['Target', 'Item'], 'name': 'CG12071-dmelanogaster', 'label': 'CG12071', '@id': '/targets/CG12071-dmelanogaster/', 'title': 'CG12071 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '81912a42-6184-47e4-a52d-b4d03f1696f2', 'status': 'released'} dm3 3R 30864877 30884178 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879DBT/ 17709641 Kevin White, UChicago e5d12b2cfabddac4bd7cc93b233b498f https://www.encodeproject.org/files/ENCFF661GKK/@@download/ENCFF661GKK.bigWig released s3://encode-public/2018/02/02/34407748-7d3b-40d9-b64c-4f30dddcea61/ENCFF661GKK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF467DUE bigWig bigWig read-depth normalized signal dm6 ENCSR688FTD Control ChIP-seq /fly-donors/ENCDO792VRF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43660/'], '@type': ['Target', 'Item'], 'name': 'CG12071-dmelanogaster', 'label': 'CG12071', '@id': '/targets/CG12071-dmelanogaster/', 'title': 'CG12071 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '81912a42-6184-47e4-a52d-b4d03f1696f2', 'status': 'released'} dm3 3R 30864877 30884178 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879DBT/ 17641396 Kevin White, UChicago 5d3b6c3446391777f996b4672a26b963 https://www.encodeproject.org/files/ENCFF467DUE/@@download/ENCFF467DUE.bigWig released s3://encode-public/2018/02/02/c29210e5-8ffc-4083-ae6a-b5c2162ba87b/ENCFF467DUE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF553BIW fastq fastq reads ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF092KOU/ 2522140658 Richard Myers, HAIB 4b7973bde85c9ba884d465fdce30f811 SRA:SRR6213978 https://www.encodeproject.org/files/ENCFF553BIW/@@download/ENCFF553BIW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/9089476c-63e2-4372-8084-1a43e4357b31/ENCFF553BIW.fastq.gz ENCFF092KOU fastq fastq reads ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF553BIW/ 2447860156 Richard Myers, HAIB faf06a7a795bb768d4f988508b5d1127 SRA:SRR6213978 https://www.encodeproject.org/files/ENCFF092KOU/@@download/ENCFF092KOU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/78ff46f8-6399-44cc-95d4-dcbd88a003c9/ENCFF092KOU.fastq.gz ENCFF517VWR bam bam unfiltered alignments GRCh38 ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF553BIW/, /files/ENCFF643CGH/, /files/ENCFF092KOU/ 5899599552 ENCODE Processing Pipeline 789491c5e76c7752a529bbd72e117380 https://www.encodeproject.org/files/ENCFF517VWR/@@download/ENCFF517VWR.bam released s3://encode-public/2016/11/08/6d7d1f7a-efee-4555-a210-772a4bb7fa6d/ENCFF517VWR.bam ENCODE3 GRCh38 archived ENCFF281FVT bam bam unfiltered alignments hg19 ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF553BIW/, /files/ENCFF807MUK/, /files/ENCFF092KOU/ 5877362249 ENCODE Processing Pipeline 2d57b23fa55e32c3e6ee3a6a6c76bf8e https://www.encodeproject.org/files/ENCFF281FVT/@@download/ENCFF281FVT.bam released s3://encode-public/2016/11/08/1a0f5534-fe8e-4b37-8e02-e63752a931ad/ENCFF281FVT.bam ENCODE3 hg19 archived ENCFF018TGS bam bam alignments hg19 ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF553BIW/, /files/ENCFF807MUK/, /files/ENCFF092KOU/ 4089338129 ENCODE Processing Pipeline 9df11d35b000dfa07c417ba5600a93a4 https://www.encodeproject.org/files/ENCFF018TGS/@@download/ENCFF018TGS.bam released s3://encode-public/2016/11/08/5a9ebbea-ef09-4aa7-9e2b-87e353aee683/ENCFF018TGS.bam ENCODE3 hg19 archived ENCFF171XEH bam bam alignments GRCh38 ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF553BIW/, /files/ENCFF643CGH/, /files/ENCFF092KOU/ 4094325551 ENCODE Processing Pipeline a81dad1eaf6ee12239c431c8f18e80d7 https://www.encodeproject.org/files/ENCFF171XEH/@@download/ENCFF171XEH.bam released s3://encode-public/2016/11/08/a81324d6-51b8-47d4-bc7b-71f182ae22ff/ENCFF171XEH.bam ENCODE3 GRCh38 archived ENCFF770PUH bam bam unfiltered alignments GRCh38 ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF553BIW/, /files/ENCFF092KOU/ 5969342403 ENCODE Processing Pipeline 764bd4998ad8109a13cc00376b0a7577 https://www.encodeproject.org/files/ENCFF770PUH/@@download/ENCFF770PUH.bam released s3://encode-public/2020/10/28/86f33b7d-4ac4-46d9-9441-1e48496e1d7d/ENCFF770PUH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF268TSF bam bam alignments GRCh38 ENCSR717TBA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF553BIW/, /files/ENCFF092KOU/ 3829287649 ENCODE Processing Pipeline 3bee8796257fcf415c491258f3c33ee4 https://www.encodeproject.org/files/ENCFF268TSF/@@download/ENCFF268TSF.bam released s3://encode-public/2020/10/28/083c9286-e37d-4fa9-af0f-8c8bc32719e2/ENCFF268TSF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF503AXB fastq fastq reads ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1167716059 Bradley Bernstein, Broad 8659a5c89e45d2e9733c5eebdb875402 SRA:SRR5832746 https://www.encodeproject.org/files/ENCFF503AXB/@@download/ENCFF503AXB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/ee6716fa-faeb-409c-b6cc-4240f71092fd/ENCFF503AXB.fastq.gz ENCFF208SWF fastq fastq reads ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1176671049 Bradley Bernstein, Broad 0d0fd9d89bfca33be7f1a082cead3a21 SRA:SRR5832747 https://www.encodeproject.org/files/ENCFF208SWF/@@download/ENCFF208SWF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/d8686deb-f01c-44cd-b1cb-43bfcbd5f05a/ENCFF208SWF.fastq.gz ENCFF483LFU fastq fastq reads ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1227186773 Bradley Bernstein, Broad a1b66824bba12e26a3e73b7e9e0981d2 SRA:SRR5832748 https://www.encodeproject.org/files/ENCFF483LFU/@@download/ENCFF483LFU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/0ba0b994-7418-42e7-b465-2fb7999a80df/ENCFF483LFU.fastq.gz ENCFF151MTF fastq fastq reads ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1202503777 Bradley Bernstein, Broad c9f856b4b84629dc678f1dcf5cbb0705 SRA:SRR5832749 https://www.encodeproject.org/files/ENCFF151MTF/@@download/ENCFF151MTF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/35dba613-adfb-4376-8f86-e3140b0388ea/ENCFF151MTF.fastq.gz ENCFF647HPQ bam bam unfiltered alignments GRCh38 ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF151MTF/, /files/ENCFF643CGH/, /files/ENCFF483LFU/, /files/ENCFF503AXB/, /files/ENCFF208SWF/ 4502368113 ENCODE Processing Pipeline b5c29418e9c2b909e9a51dd97c690357 https://www.encodeproject.org/files/ENCFF647HPQ/@@download/ENCFF647HPQ.bam released s3://encode-public/2016/10/27/589512ff-256d-4486-9a5f-87c30a78c684/ENCFF647HPQ.bam ENCODE3 GRCh38 archived ENCFF215PCC bam bam unfiltered alignments hg19 ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF151MTF/, /files/ENCFF807MUK/, /files/ENCFF483LFU/, /files/ENCFF503AXB/, /files/ENCFF208SWF/ 4489321454 ENCODE Processing Pipeline bce35483acfa35637f080dd407ae29a4 https://www.encodeproject.org/files/ENCFF215PCC/@@download/ENCFF215PCC.bam released s3://encode-public/2016/10/27/c0f0e7fb-a455-4f95-a1f2-329d604b686f/ENCFF215PCC.bam ENCODE3 hg19 archived ENCFF524KQP bam bam alignments GRCh38 ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF151MTF/, /files/ENCFF643CGH/, /files/ENCFF483LFU/, /files/ENCFF503AXB/, /files/ENCFF208SWF/ 3748039780 ENCODE Processing Pipeline 9f1653e5c3e2e7b72d1627b7d005c419 https://www.encodeproject.org/files/ENCFF524KQP/@@download/ENCFF524KQP.bam released s3://encode-public/2016/10/27/68a6ef0e-7bb8-4a85-b1be-bb9e42d754b2/ENCFF524KQP.bam ENCODE3 GRCh38 archived ENCFF934RGM bam bam alignments hg19 ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF151MTF/, /files/ENCFF807MUK/, /files/ENCFF483LFU/, /files/ENCFF503AXB/, /files/ENCFF208SWF/ 3743051729 ENCODE Processing Pipeline 0f9666e052f5b7b441be5e5b58430835 https://www.encodeproject.org/files/ENCFF934RGM/@@download/ENCFF934RGM.bam released s3://encode-public/2016/10/27/3ded919b-0d7c-4476-8c98-8cfc46bfd4f5/ENCFF934RGM.bam ENCODE3 hg19 archived ENCFF202JWU bam bam unfiltered alignments GRCh38 ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF503AXB/, /files/ENCFF151MTF/, /files/ENCFF483LFU/, /files/ENCFF110MCL/, /files/ENCFF208SWF/ 4562075339 ENCODE Processing Pipeline b9cf42a402a36eed58dd75c353664d50 https://www.encodeproject.org/files/ENCFF202JWU/@@download/ENCFF202JWU.bam released s3://encode-public/2020/08/20/99409ea5-b7aa-4bce-bc7c-6d0049a9c2c4/ENCFF202JWU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF635YRM bam bam alignments GRCh38 ENCSR195BZZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF503AXB/, /files/ENCFF151MTF/, /files/ENCFF483LFU/, /files/ENCFF110MCL/, /files/ENCFF208SWF/ 3837240015 ENCODE Processing Pipeline 3df626d9023f825141ffc20f21be7d80 https://www.encodeproject.org/files/ENCFF635YRM/@@download/ENCFF635YRM.bam released s3://encode-public/2020/08/20/c0168922-8807-4345-bdd3-61c6f4656c51/ENCFF635YRM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF757YZF fastq fastq reads ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF409WTS/ 3037476896 Michael Snyder, Stanford e5df37d13c4092b80df7655d7ac85c11 SRA:SRR6212619 https://www.encodeproject.org/files/ENCFF757YZF/@@download/ENCFF757YZF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/709e458a-3661-4d00-afcd-2e234769f50a/ENCFF757YZF.fastq.gz ENCFF409WTS fastq fastq reads ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF757YZF/ 3055650330 Michael Snyder, Stanford c01aa6bf2358086b453e185c729c8fb7 SRA:SRR6212619 https://www.encodeproject.org/files/ENCFF409WTS/@@download/ENCFF409WTS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/1a98fa3b-3783-42fd-8d90-8e846fe76928/ENCFF409WTS.fastq.gz ENCFF164MKI bam bam unfiltered alignments hg19 ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF409WTS/, /files/ENCFF807MUK/, /files/ENCFF757YZF/ 6602520937 ENCODE Processing Pipeline 433f3e4f767f186fd99a94054eba5999 https://www.encodeproject.org/files/ENCFF164MKI/@@download/ENCFF164MKI.bam released s3://encode-public/2016/10/27/19f643b2-edfb-46c1-a259-8c16fb5d8abe/ENCFF164MKI.bam ENCODE3 hg19 archived ENCFF745BKE bam bam alignments hg19 ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF409WTS/, /files/ENCFF807MUK/, /files/ENCFF757YZF/ 5443297151 ENCODE Processing Pipeline c23b5e184cade5e8c1a3836217b82f49 https://www.encodeproject.org/files/ENCFF745BKE/@@download/ENCFF745BKE.bam released s3://encode-public/2016/10/27/942c8e3e-e9bf-4fea-be32-bcf2acc0714f/ENCFF745BKE.bam ENCODE3 hg19 archived ENCFF925USL bam bam unfiltered alignments GRCh38 ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF409WTS/, /files/ENCFF643CGH/, /files/ENCFF757YZF/ 6611286073 ENCODE Processing Pipeline 9c80130611d943bae225194847c6e8cf https://www.encodeproject.org/files/ENCFF925USL/@@download/ENCFF925USL.bam released s3://encode-public/2016/10/27/d50b9d02-053f-4900-8cf9-12793eaca6dc/ENCFF925USL.bam ENCODE3 GRCh38 archived ENCFF838GUO bam bam alignments GRCh38 ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF409WTS/, /files/ENCFF643CGH/, /files/ENCFF757YZF/ 5454742760 ENCODE Processing Pipeline b3ec22dd9c7852051d0e478e4933c022 https://www.encodeproject.org/files/ENCFF838GUO/@@download/ENCFF838GUO.bam released s3://encode-public/2016/10/27/bc3c6219-9a62-4fe9-84ec-d229e5ef4ce9/ENCFF838GUO.bam ENCODE3 GRCh38 archived ENCFF636KOD bam bam unfiltered alignments GRCh38 ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF757YZF/, /files/ENCFF409WTS/ 6596011789 ENCODE Processing Pipeline b34defe9f278956ff0021b815438a345 https://www.encodeproject.org/files/ENCFF636KOD/@@download/ENCFF636KOD.bam released s3://encode-public/2020/06/03/648063f5-0921-4874-b1a6-3d05d7f09a3e/ENCFF636KOD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF268HGH bam bam alignments GRCh38 ENCSR091EBM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF757YZF/, /files/ENCFF409WTS/ 5360361248 ENCODE Processing Pipeline 4fc3deb9801910c9c18ce88cae16737d https://www.encodeproject.org/files/ENCFF268HGH/@@download/ENCFF268HGH.bam released s3://encode-public/2020/06/03/6bf68abe-b979-4865-8bd6-1df038cce063/ENCFF268HGH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF706VQY fastq fastq reads ENCSR158HVZ Control ChIP-seq /fly-donors/ENCDO221EUY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43158/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m5-HLH-dmelanogaster', 'label': 'E(spl)m5-HLH', '@id': '/targets/E(spl)m5-HLH-dmelanogaster/', 'title': 'E(spl)m5-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5df6a0a3-d90d-46db-a3e0-45455096bcc6', 'status': 'released'} dm3 3R 21846441 21867237 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1088809483 Kevin White, UChicago d728de8878117ff659484557b5c16054 https://www.encodeproject.org/files/ENCFF706VQY/@@download/ENCFF706VQY.fastq.gz Illumina HiSeq 4000 /files/ENCFF014WLX/ released s3://encode-public/2018/02/01/18a01fd3-bced-40c0-b631-64059390c158/ENCFF706VQY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF870JXM bam bam alignments dm6 ENCSR158HVZ Control ChIP-seq /fly-donors/ENCDO221EUY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43158/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m5-HLH-dmelanogaster', 'label': 'E(spl)m5-HLH', '@id': '/targets/E(spl)m5-HLH-dmelanogaster/', 'title': 'E(spl)m5-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5df6a0a3-d90d-46db-a3e0-45455096bcc6', 'status': 'released'} dm3 3R 21846441 21867237 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF706VQY/, /files/ENCFF479RCH/ 1468602503 Kevin White, UChicago ce860d3df74f6d2f23cb339625f36eee https://www.encodeproject.org/files/ENCFF870JXM/@@download/ENCFF870JXM.bam released s3://encode-public/2018/02/02/0d50b5e3-8b32-4e5f-b963-429fc5ba47fe/ENCFF870JXM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF050GGE bigWig bigWig signal of unique reads dm6 ENCSR158HVZ Control ChIP-seq /fly-donors/ENCDO221EUY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43158/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m5-HLH-dmelanogaster', 'label': 'E(spl)m5-HLH', '@id': '/targets/E(spl)m5-HLH-dmelanogaster/', 'title': 'E(spl)m5-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5df6a0a3-d90d-46db-a3e0-45455096bcc6', 'status': 'released'} dm3 3R 21846441 21867237 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870JXM/ 17752769 Kevin White, UChicago cac8a5eeb6581002bb0d8e511cddd23a https://www.encodeproject.org/files/ENCFF050GGE/@@download/ENCFF050GGE.bigWig released s3://encode-public/2018/02/02/352926b4-c0ac-424a-87f6-633d873358d3/ENCFF050GGE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF678LSH bigWig bigWig read-depth normalized signal dm6 ENCSR158HVZ Control ChIP-seq /fly-donors/ENCDO221EUY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43158/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m5-HLH-dmelanogaster', 'label': 'E(spl)m5-HLH', '@id': '/targets/E(spl)m5-HLH-dmelanogaster/', 'title': 'E(spl)m5-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5df6a0a3-d90d-46db-a3e0-45455096bcc6', 'status': 'released'} dm3 3R 21846441 21867237 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870JXM/ 17714123 Kevin White, UChicago 731f9798b7daee70cc846765b723cf83 https://www.encodeproject.org/files/ENCFF678LSH/@@download/ENCFF678LSH.bigWig released s3://encode-public/2018/02/02/3e0f8cbb-1757-4c94-83cb-e9c8bedcafd8/ENCFF678LSH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF630MIR fastq fastq reads ENCSR473QXV Control ChIP-seq /fly-donors/ENCDO485DFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/48785/'], '@type': ['Target', 'Item'], 'name': 'wek-dmelanogaster', 'label': 'wek', '@id': '/targets/wek-dmelanogaster/', 'title': 'wek (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd44ef13d-bd57-454a-8eb9-ebae2929ae44', 'status': 'released'} dm3 2L 15760323 15777744 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1090563240 Kevin White, UChicago 458b7a186521a0bf96ee38e0b525a317 https://www.encodeproject.org/files/ENCFF630MIR/@@download/ENCFF630MIR.fastq.gz Illumina HiSeq 4000 /files/ENCFF272NQX/ released s3://encode-public/2018/02/01/a56cc8a1-4360-455a-b86e-d8e3168a746d/ENCFF630MIR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF740ODS bam bam alignments dm6 ENCSR473QXV Control ChIP-seq /fly-donors/ENCDO485DFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/48785/'], '@type': ['Target', 'Item'], 'name': 'wek-dmelanogaster', 'label': 'wek', '@id': '/targets/wek-dmelanogaster/', 'title': 'wek (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd44ef13d-bd57-454a-8eb9-ebae2929ae44', 'status': 'released'} dm3 2L 15760323 15777744 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF630MIR/, /files/ENCFF479RCH/ 1469122960 Kevin White, UChicago 50f1e09e31fa2b59228789f4da959aed https://www.encodeproject.org/files/ENCFF740ODS/@@download/ENCFF740ODS.bam released s3://encode-public/2018/02/02/1db7f9c1-8c3c-4df4-b8d7-a0eccd4e0f47/ENCFF740ODS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF838EGF bigWig bigWig read-depth normalized signal dm6 ENCSR473QXV Control ChIP-seq /fly-donors/ENCDO485DFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/48785/'], '@type': ['Target', 'Item'], 'name': 'wek-dmelanogaster', 'label': 'wek', '@id': '/targets/wek-dmelanogaster/', 'title': 'wek (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd44ef13d-bd57-454a-8eb9-ebae2929ae44', 'status': 'released'} dm3 2L 15760323 15777744 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF740ODS/ 17703862 Kevin White, UChicago 7532734bd25ba3ad34a1e22dd0c6be8f https://www.encodeproject.org/files/ENCFF838EGF/@@download/ENCFF838EGF.bigWig released s3://encode-public/2018/02/02/f5d08114-417c-42b0-9103-a1b199f4d48f/ENCFF838EGF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF730ENW bigWig bigWig signal of unique reads dm6 ENCSR473QXV Control ChIP-seq /fly-donors/ENCDO485DFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/48785/'], '@type': ['Target', 'Item'], 'name': 'wek-dmelanogaster', 'label': 'wek', '@id': '/targets/wek-dmelanogaster/', 'title': 'wek (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd44ef13d-bd57-454a-8eb9-ebae2929ae44', 'status': 'released'} dm3 2L 15760323 15777744 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF740ODS/ 17742363 Kevin White, UChicago 72549f7858cc13a7b8a8d609b93cc42b https://www.encodeproject.org/files/ENCFF730ENW/@@download/ENCFF730ENW.bigWig released s3://encode-public/2018/02/02/426139c8-a180-4374-a545-51dea928b96f/ENCFF730ENW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF235EMW fastq fastq reads ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 2345257512 Bradley Bernstein, Broad 2266f57445a7bda0712f339f37c9f9e5 SRA:SRR10837985 https://www.encodeproject.org/files/ENCFF235EMW/@@download/ENCFF235EMW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/f54f5bfe-a2d7-464c-8fd7-c798c073d98d/ENCFF235EMW.fastq.gz ENCFF298IUX fastq fastq reads ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 2382089547 Bradley Bernstein, Broad cc357b22b61128f29fe1dd90a58c645d SRA:SRR10837986 https://www.encodeproject.org/files/ENCFF298IUX/@@download/ENCFF298IUX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/04/26/27c89b32-cf6a-4b5a-a964-4db52945d010/ENCFF298IUX.fastq.gz ENCFF748JCT fastq fastq reads ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 441425202 Bradley Bernstein, Broad 5290082a8a5ffb013bc0de1631051918 SRA:SRR10837983 https://www.encodeproject.org/files/ENCFF748JCT/@@download/ENCFF748JCT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/aa672193-b459-41f7-92c9-1eea4915c227/ENCFF748JCT.fastq.gz ENCFF604YTT fastq fastq reads ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 440489967 Bradley Bernstein, Broad 8ad0e4b2265f4b45ad8f7ac707a66704 SRA:SRR10837984 https://www.encodeproject.org/files/ENCFF604YTT/@@download/ENCFF604YTT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/c1ccf51f-b9cb-496b-b4ed-6acc00af71c2/ENCFF604YTT.fastq.gz ENCFF023JRI bam bam unfiltered alignments GRCh38 ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF604YTT/, /files/ENCFF298IUX/, /files/ENCFF235EMW/, /files/ENCFF748JCT/, /files/ENCFF643CGH/ 5047282402 ENCODE Processing Pipeline c2443ba92ce41f40f9435ead5c87b334 https://www.encodeproject.org/files/ENCFF023JRI/@@download/ENCFF023JRI.bam released s3://encode-public/2018/11/27/957ba0e8-006d-4e06-b6ec-3bd2e389cc85/ENCFF023JRI.bam ENCODE3 GRCh38 archived ENCFF675VKU bam bam alignments GRCh38 ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF604YTT/, /files/ENCFF298IUX/, /files/ENCFF235EMW/, /files/ENCFF748JCT/, /files/ENCFF643CGH/ 4074328719 ENCODE Processing Pipeline 8a43eebdb370152e3f40fb6676efac7f https://www.encodeproject.org/files/ENCFF675VKU/@@download/ENCFF675VKU.bam released s3://encode-public/2018/11/27/605ba8b9-bd44-4b16-9547-ca83879a2e88/ENCFF675VKU.bam ENCODE3 GRCh38 archived ENCFF584HIJ bam bam unfiltered alignments hg19 ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens 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reads ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 single-ended 889154735 Bradley Bernstein, Broad 57b8d8e049be915ee54f7fc20d007b93 SRA:SRR10837987 https://www.encodeproject.org/files/ENCFF570AXT/@@download/ENCFF570AXT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/23097e60-7c56-4f3f-9125-6fb4ef629e6a/ENCFF570AXT.fastq.gz ENCFF957SKX fastq fastq reads ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 single-ended 880064857 Bradley Bernstein, Broad 5f3a2010e481a2a627e1d3567a812d33 SRA:SRR10837988 https://www.encodeproject.org/files/ENCFF957SKX/@@download/ENCFF957SKX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/f34db992-711e-4987-8e27-696a3cd80881/ENCFF957SKX.fastq.gz ENCFF219MBS bam bam unfiltered alignments GRCh38 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https://www.encodeproject.org/files/ENCFF063BED/@@download/ENCFF063BED.bam released s3://encode-public/2020/09/19/f1dc5e4e-4317-4ade-bdef-d9c2c5d8592d/ENCFF063BED.bam ENCODE4 v1.5.1 GRCh38 released ENCFF599GDL bam bam unfiltered alignments GRCh38 ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 /files/ENCFF570AXT/, /files/ENCFF957SKX/, /files/ENCFF100JCN/, /files/ENCFF415XTT/, /files/ENCFF064TUM/, /files/ENCFF192SRS/, /files/ENCFF110MCL/ 3537727246 ENCODE Processing Pipeline 8825a65e6bcc7aea613328bcd0a61466 https://www.encodeproject.org/files/ENCFF599GDL/@@download/ENCFF599GDL.bam released s3://encode-public/2020/09/19/cc03d938-1315-4648-9deb-e5a716e99137/ENCFF599GDL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF072GIZ bam bam alignments GRCh38 ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF235EMW/, /files/ENCFF604YTT/, /files/ENCFF298IUX/, /files/ENCFF748JCT/, /files/ENCFF110MCL/ 4166381328 ENCODE Processing Pipeline 5bb8d045b732f04f5c819da9230d7741 https://www.encodeproject.org/files/ENCFF072GIZ/@@download/ENCFF072GIZ.bam released s3://encode-public/2020/09/19/b6519635-e95c-4666-8e93-49a380e3e666/ENCFF072GIZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF383IJS bam bam alignments GRCh38 ENCSR514EZP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 /files/ENCFF570AXT/, /files/ENCFF957SKX/, /files/ENCFF100JCN/, /files/ENCFF415XTT/, /files/ENCFF064TUM/, /files/ENCFF192SRS/, /files/ENCFF110MCL/ 2826335198 ENCODE Processing Pipeline 734b5ed3ee875e26c88a3f711e1906b8 https://www.encodeproject.org/files/ENCFF383IJS/@@download/ENCFF383IJS.bam released s3://encode-public/2020/09/19/79949adb-dbcd-4dbf-a14d-8509b6331aa2/ENCFF383IJS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF044QFZ fastq fastq reads ENCSR086GBI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF778HQR/ 3861779962 Michael Snyder, Stanford 7866177156c19424f3c8c96e55cd71b7 SRA:SRR14636887 https://www.encodeproject.org/files/ENCFF044QFZ/@@download/ENCFF044QFZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/08/909e8fc4-fad2-4bd9-a80d-7e03042b213c/ENCFF044QFZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF562UDF bam bam alignments GRCh38 ENCSR086GBI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF778HQR/, /files/ENCFF044QFZ/, /files/ENCFF110MCL/ 4759266278 ENCODE Processing Pipeline 6d922c51d755208e47926e2a5053bfe1 https://www.encodeproject.org/files/ENCFF562UDF/@@download/ENCFF562UDF.bam released s3://encode-public/2020/10/14/072ba9cb-7321-451a-b362-0d5e0f9e3b7a/ENCFF562UDF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF778HQR fastq fastq reads ENCSR086GBI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF044QFZ/ 3509021234 Michael Snyder, Stanford 7c010c7d24894270182c113e897ab2ee SRA:SRR14636887 https://www.encodeproject.org/files/ENCFF778HQR/@@download/ENCFF778HQR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/08/05d39ae0-592c-42ad-a6d1-a86ebea61c7c/ENCFF778HQR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF954SAX bam bam unfiltered alignments GRCh38 ENCSR086GBI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF778HQR/, /files/ENCFF044QFZ/, /files/ENCFF110MCL/ 6808841729 ENCODE Processing Pipeline 1822d76b5200780c0fdda646aaac682d https://www.encodeproject.org/files/ENCFF954SAX/@@download/ENCFF954SAX.bam released s3://encode-public/2020/10/14/0970c9fc-bdaf-4e3f-ae8d-c9766738010e/ENCFF954SAX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF761PKN fastq fastq reads ENCSR421OFW Control ChIP-seq /fly-donors/ENCDO852KDK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33059/'], '@type': ['Target', 'Item'], 'name': 'run-dmelanogaster', 'label': 'run', '@id': '/targets/run-dmelanogaster/', 'title': 'run (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a0c2022c-1691-43c5-a7a4-db8efad5ce36', 'status': 'released'} dm3 X 20504700 20606685 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1007343189 Kevin White, UChicago 3dc03a9e75b279e582ca420412a04931 https://www.encodeproject.org/files/ENCFF761PKN/@@download/ENCFF761PKN.fastq.gz Illumina HiSeq 4000 /files/ENCFF493CZE/ released s3://encode-public/2018/09/18/77266163-37b8-4663-834f-94ba57585f66/ENCFF761PKN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF420GMR bam bam alignments dm6 ENCSR421OFW Control ChIP-seq /fly-donors/ENCDO852KDK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33059/'], '@type': ['Target', 'Item'], 'name': 'run-dmelanogaster', 'label': 'run', '@id': '/targets/run-dmelanogaster/', 'title': 'run (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a0c2022c-1691-43c5-a7a4-db8efad5ce36', 'status': 'released'} dm3 X 20504700 20606685 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF761PKN/, /files/ENCFF479RCH/ 1305060612 Kevin White, UChicago 06b18dff9b89fb06bdb8dba553f796ea https://www.encodeproject.org/files/ENCFF420GMR/@@download/ENCFF420GMR.bam released s3://encode-public/2018/09/19/561d9b34-47fd-47ec-acaa-9d8df7fc0e8b/ENCFF420GMR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF953NUJ bigWig bigWig signal of unique reads dm6 ENCSR421OFW Control ChIP-seq /fly-donors/ENCDO852KDK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33059/'], '@type': ['Target', 'Item'], 'name': 'run-dmelanogaster', 'label': 'run', '@id': '/targets/run-dmelanogaster/', 'title': 'run (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a0c2022c-1691-43c5-a7a4-db8efad5ce36', 'status': 'released'} dm3 X 20504700 20606685 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF420GMR/ 17575727 Kevin White, UChicago df08b0e086dbe2f0774c023e097ec2fe https://www.encodeproject.org/files/ENCFF953NUJ/@@download/ENCFF953NUJ.bigWig released s3://encode-public/2018/09/19/f1cbb6eb-60e2-496b-921e-26ad3166082e/ENCFF953NUJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF815HLU bigWig bigWig read-depth normalized signal dm6 ENCSR421OFW Control ChIP-seq /fly-donors/ENCDO852KDK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33059/'], '@type': ['Target', 'Item'], 'name': 'run-dmelanogaster', 'label': 'run', '@id': '/targets/run-dmelanogaster/', 'title': 'run (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a0c2022c-1691-43c5-a7a4-db8efad5ce36', 'status': 'released'} dm3 X 20504700 20606685 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF420GMR/ 17603606 Kevin White, UChicago eb93e5f1d0cdbe02d69fe95ce66ae366 https://www.encodeproject.org/files/ENCFF815HLU/@@download/ENCFF815HLU.bigWig released s3://encode-public/2018/09/19/b2edc8f5-6598-48e2-a36a-95e1090ac4ab/ENCFF815HLU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF521XNG fastq fastq reads ENCSR568HWW Control ChIP-seq /worm-donors/ENCDO461MEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177985/'], '@type': ['Target', 'Item'], 'name': 'rbr-2-celegans', 'label': 'rbr-2', '@id': '/targets/rbr-2-celegans/', 'title': 'rbr-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e59df89c-ad82-453b-96f4-b5ffe24fa4af', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 607706148 Kevin White, UChicago 2209d0393fbc62d98bc2155dded8be46 https://www.encodeproject.org/files/ENCFF521XNG/@@download/ENCFF521XNG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/12f68bdc-5fee-4ca9-9198-ef05eafe7025/ENCFF521XNG.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF596GYW bam bam alignments ce10 ENCSR568HWW Control ChIP-seq /worm-donors/ENCDO461MEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177985/'], '@type': ['Target', 'Item'], 'name': 'rbr-2-celegans', 'label': 'rbr-2', '@id': '/targets/rbr-2-celegans/', 'title': 'rbr-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e59df89c-ad82-453b-96f4-b5ffe24fa4af', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF521XNG/ 868714751 Kevin White, UChicago c01dacc192137095da25a1d112a1ca24 https://www.encodeproject.org/files/ENCFF596GYW/@@download/ENCFF596GYW.bam released s3://encode-public/2015/08/19/2b3be816-673a-4f40-806b-07c3dba22b3e/ENCFF596GYW.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF628GPH bigWig bigWig read-depth normalized signal ce10 ENCSR568HWW Control ChIP-seq /worm-donors/ENCDO461MEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177985/'], '@type': ['Target', 'Item'], 'name': 'rbr-2-celegans', 'label': 'rbr-2', '@id': '/targets/rbr-2-celegans/', 'title': 'rbr-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e59df89c-ad82-453b-96f4-b5ffe24fa4af', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF596GYW/ 9960958 Kevin White, UChicago 65872ef4bfcf3a82282b6e91f1a06cfe https://www.encodeproject.org/files/ENCFF628GPH/@@download/ENCFF628GPH.bigWig released s3://encode-public/2015/10/02/c489195b-4833-4835-8672-1ac888a43ca0/ENCFF628GPH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF469QQY bigWig bigWig signal of unique reads ce10 ENCSR568HWW Control ChIP-seq /worm-donors/ENCDO461MEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177985/'], '@type': ['Target', 'Item'], 'name': 'rbr-2-celegans', 'label': 'rbr-2', '@id': '/targets/rbr-2-celegans/', 'title': 'rbr-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e59df89c-ad82-453b-96f4-b5ffe24fa4af', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF596GYW/ 9958244 Kevin White, UChicago cd33bdeeb50ea8887af7dbe4f73cd234 https://www.encodeproject.org/files/ENCFF469QQY/@@download/ENCFF469QQY.bigWig released s3://encode-public/2015/10/02/491bd70a-b55a-4b6e-a609-e0f9a163b797/ENCFF469QQY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF934YMP bam bam alignments ce11 ENCSR568HWW Control ChIP-seq /worm-donors/ENCDO461MEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177985/'], '@type': ['Target', 'Item'], 'name': 'rbr-2-celegans', 'label': 'rbr-2', '@id': '/targets/rbr-2-celegans/', 'title': 'rbr-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e59df89c-ad82-453b-96f4-b5ffe24fa4af', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF521XNG/ 869461642 Kevin White, UChicago 3e3a03039b033a924620ed18bbd090ac https://www.encodeproject.org/files/ENCFF934YMP/@@download/ENCFF934YMP.bam released s3://encode-public/2016/01/19/514cd3dd-0835-4085-8049-55f46bb62f78/ENCFF934YMP.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF737REV bigWig bigWig signal of unique reads ce11 ENCSR568HWW Control ChIP-seq /worm-donors/ENCDO461MEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177985/'], '@type': ['Target', 'Item'], 'name': 'rbr-2-celegans', 'label': 'rbr-2', '@id': '/targets/rbr-2-celegans/', 'title': 'rbr-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e59df89c-ad82-453b-96f4-b5ffe24fa4af', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF934YMP/ 9953456 Kevin White, UChicago 60625610e96ca740f5d1a01fe022f672 https://www.encodeproject.org/files/ENCFF737REV/@@download/ENCFF737REV.bigWig released s3://encode-public/2016/02/03/50668120-d014-4fa0-bdb8-f8bea9ae085c/ENCFF737REV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF232QGD bigWig bigWig read-depth normalized signal ce11 ENCSR568HWW Control ChIP-seq /worm-donors/ENCDO461MEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177985/'], '@type': ['Target', 'Item'], 'name': 'rbr-2-celegans', 'label': 'rbr-2', '@id': '/targets/rbr-2-celegans/', 'title': 'rbr-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'e59df89c-ad82-453b-96f4-b5ffe24fa4af', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF934YMP/ 9954724 Kevin White, UChicago ef1d492f731a4ebb968d407d0391d0b7 https://www.encodeproject.org/files/ENCFF232QGD/@@download/ENCFF232QGD.bigWig released s3://encode-public/2016/02/03/b72f6409-26d8-4c1c-9fee-608c18dc1158/ENCFF232QGD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF954UXI fastq fastq reads ENCSR016AZO Control ChIP-seq /worm-donors/ENCDO204TKH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185757/'], '@type': ['Target', 'Item'], 'name': 'nhr-111-celegans', 'label': 'nhr-111', '@id': '/targets/nhr-111-celegans/', 'title': 'nhr-111 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f2573ec-8974-442a-9de7-22c670aae19c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 755689652 Kevin White, UChicago ba33fe80e61ae65a8a1442dcb89b892b https://www.encodeproject.org/files/ENCFF954UXI/@@download/ENCFF954UXI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/7f6953e6-85b9-4fcb-a40e-c5c181a5fc3f/ENCFF954UXI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF526COS bam bam alignments ce11 ENCSR016AZO Control ChIP-seq /worm-donors/ENCDO204TKH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185757/'], '@type': ['Target', 'Item'], 'name': 'nhr-111-celegans', 'label': 'nhr-111', '@id': '/targets/nhr-111-celegans/', 'title': 'nhr-111 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f2573ec-8974-442a-9de7-22c670aae19c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF954UXI/, /files/ENCFF586MOL/ 977544510 Kevin White, UChicago 2379e131d32e7f3b5114e29b490ca1ff https://www.encodeproject.org/files/ENCFF526COS/@@download/ENCFF526COS.bam released s3://encode-public/2018/02/28/72c69daa-1779-421a-84de-1fb0620182fe/ENCFF526COS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF870RGZ bigWig bigWig read-depth normalized signal ce11 ENCSR016AZO Control ChIP-seq /worm-donors/ENCDO204TKH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185757/'], '@type': ['Target', 'Item'], 'name': 'nhr-111-celegans', 'label': 'nhr-111', '@id': '/targets/nhr-111-celegans/', 'title': 'nhr-111 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f2573ec-8974-442a-9de7-22c670aae19c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF526COS/ 9984791 Kevin White, UChicago 7dea868f67a393f4468cc7bfe9031015 https://www.encodeproject.org/files/ENCFF870RGZ/@@download/ENCFF870RGZ.bigWig released s3://encode-public/2018/03/01/6769378b-e063-4cba-bc05-604a7d5ef233/ENCFF870RGZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF037PHJ bigWig bigWig signal of unique reads ce11 ENCSR016AZO Control ChIP-seq /worm-donors/ENCDO204TKH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185757/'], '@type': ['Target', 'Item'], 'name': 'nhr-111-celegans', 'label': 'nhr-111', '@id': '/targets/nhr-111-celegans/', 'title': 'nhr-111 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f2573ec-8974-442a-9de7-22c670aae19c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF526COS/ 9923934 Kevin White, UChicago feb075a9fb9fa21afacab35311741aff https://www.encodeproject.org/files/ENCFF037PHJ/@@download/ENCFF037PHJ.bigWig released s3://encode-public/2018/03/01/6a79a471-d59a-48dc-8d1d-4bb2de25a457/ENCFF037PHJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF270RHG bam bam unfiltered alignments hg19 ENCSR849OTN Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF805GCU/ 1680875489 ENCODE Processing Pipeline 6700a02fb08b97d66fc6548465e2ada8 https://www.encodeproject.org/files/ENCFF270RHG/@@download/ENCFF270RHG.bam released s3://encode-public/2018/02/21/fb147019-8ab7-4c3b-b08b-7bc9af611c0a/ENCFF270RHG.bam ENCODE3 hg19 archived ENCFF805GCU fastq fastq reads ENCSR849OTN Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1475703682 Richard Myers, HAIB 59907225008306ed9c40227100ed2055 SRA:SRR5339405 https://www.encodeproject.org/files/ENCFF805GCU/@@download/ENCFF805GCU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/dda10480-3b31-4e29-be31-1cf915560860/ENCFF805GCU.fastq.gz ENCFF991UTU bam bam alignments hg19 ENCSR849OTN Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF805GCU/ 1296759673 ENCODE Processing Pipeline f7a9671af0eb65d308367bd6ed9e22cc https://www.encodeproject.org/files/ENCFF991UTU/@@download/ENCFF991UTU.bam released s3://encode-public/2016/01/15/98944183-9549-4aeb-9348-3789d7ec9a19/ENCFF991UTU.bam ENCODE3 hg19 archived ENCFF349KXI bam bam unfiltered alignments GRCh38 ENCSR849OTN Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF805GCU/ 1690991540 ENCODE Processing Pipeline 3aa1c3a76de0466f5be0a68edc6e0a61 https://www.encodeproject.org/files/ENCFF349KXI/@@download/ENCFF349KXI.bam released s3://encode-public/2016/05/06/1f20a050-5e29-433f-9067-2c522fc0ad53/ENCFF349KXI.bam ENCODE3 GRCh38 archived ENCFF370PSF bam bam alignments GRCh38 ENCSR849OTN Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF805GCU/ 1297313149 ENCODE Processing Pipeline d4b63fe292d54e734bf8aff02eca9a56 https://www.encodeproject.org/files/ENCFF370PSF/@@download/ENCFF370PSF.bam released s3://encode-public/2016/05/06/2a106d0e-0745-460d-b7f5-0b23bcd339c5/ENCFF370PSF.bam ENCODE3 GRCh38 archived ENCFF238LEY bam bam alignments GRCh38 ENCSR849OTN Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF805GCU/ 1345984303 ENCODE Processing Pipeline 21079709db04ca4e0e5ecce4859d05ea https://www.encodeproject.org/files/ENCFF238LEY/@@download/ENCFF238LEY.bam released s3://encode-public/2020/06/06/f8e85196-1f3a-4095-b678-67f375b1bddf/ENCFF238LEY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF202MDI bam bam unfiltered alignments GRCh38 ENCSR849OTN Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF805GCU/ 1655947518 ENCODE Processing Pipeline 310f9d004977e96c47e8b241df96f1d4 https://www.encodeproject.org/files/ENCFF202MDI/@@download/ENCFF202MDI.bam released s3://encode-public/2020/06/06/b409eb2c-871e-430c-8d8c-7baf2fcc0933/ENCFF202MDI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF832FEW bam bam unfiltered alignments hg19 ENCSR443AIH Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF929JYK/ 2006936951 ENCODE Processing Pipeline c2df6406450fb4ed852b002a63c5cfb5 https://www.encodeproject.org/files/ENCFF832FEW/@@download/ENCFF832FEW.bam released s3://encode-public/2018/02/22/95c85d34-e2e4-427b-9464-c07f3ea308ed/ENCFF832FEW.bam ENCODE3 hg19 archived ENCFF929JYK fastq fastq reads ENCSR443AIH Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1804180998 Richard Myers, HAIB 59a8d3e55e3d7a86582f321b37a93aa8 SRA:SRR5338781 https://www.encodeproject.org/files/ENCFF929JYK/@@download/ENCFF929JYK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/4503b7ab-5e01-4170-8182-b4203d1edcf3/ENCFF929JYK.fastq.gz ENCFF807CUF bam bam alignments hg19 ENCSR443AIH Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF929JYK/ 1486770424 ENCODE Processing Pipeline 0d5ed208171e263d34d71ceebe05182b https://www.encodeproject.org/files/ENCFF807CUF/@@download/ENCFF807CUF.bam released s3://encode-public/2016/01/15/baf9931b-ccd5-4404-90e7-8c571a8f82f6/ENCFF807CUF.bam ENCODE3 hg19 archived ENCFF516YKX bam bam unfiltered alignments GRCh38 ENCSR443AIH Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF929JYK/ 2016540098 ENCODE Processing Pipeline 0e84f731eb233906be88f1b61629a234 https://www.encodeproject.org/files/ENCFF516YKX/@@download/ENCFF516YKX.bam released s3://encode-public/2016/05/06/9484a1a3-29c5-4847-8400-eb61e01d333e/ENCFF516YKX.bam ENCODE3 GRCh38 archived ENCFF406XEH bam bam alignments GRCh38 ENCSR443AIH Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF929JYK/ 1487307744 ENCODE Processing Pipeline b183090c64bfeab5957aaa5ce5161df9 https://www.encodeproject.org/files/ENCFF406XEH/@@download/ENCFF406XEH.bam released s3://encode-public/2016/05/06/4c19d8e1-9dfd-4796-aa06-f6ae76a89df9/ENCFF406XEH.bam ENCODE3 GRCh38 archived ENCFF909NCG bam bam unfiltered alignments GRCh38 ENCSR443AIH Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF929JYK/ 2006546693 ENCODE Processing Pipeline 6151cbe1d70cf6cbbe49e364a4b58c92 https://www.encodeproject.org/files/ENCFF909NCG/@@download/ENCFF909NCG.bam released s3://encode-public/2020/06/06/d52b5cd4-c68b-4a2d-bbf1-3833a8a62b81/ENCFF909NCG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF476SBQ bam bam alignments GRCh38 ENCSR443AIH Control ChIP-seq /human-donors/ENCDO882MMZ/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF929JYK/ 1569326646 ENCODE Processing Pipeline 4b49842ce33a92a6e177d4aead3d8a9c https://www.encodeproject.org/files/ENCFF476SBQ/@@download/ENCFF476SBQ.bam released s3://encode-public/2020/06/06/2df62175-7b1e-492d-aea0-e249337a2a8e/ENCFF476SBQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF468LWA fastq fastq reads ENCSR443FOO Control ChIP-seq /worm-donors/ENCDO910IPQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185022/'], '@type': ['Target', 'Item'], 'name': 'pax-3-celegans', 'label': 'pax-3', '@id': '/targets/pax-3-celegans/', 'title': 'pax-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4702e407-c805-4329-a00f-984b2524e979', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 940101385 Kevin White, UChicago dc33c3445c09cb38c6fa087b3b1b0684 https://www.encodeproject.org/files/ENCFF468LWA/@@download/ENCFF468LWA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/1998e71c-a9c7-4e32-b240-9416c2ebdd8e/ENCFF468LWA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF573LDN bigWig bigWig signal of unique reads ce11 ENCSR443FOO Control ChIP-seq /worm-donors/ENCDO910IPQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185022/'], '@type': ['Target', 'Item'], 'name': 'pax-3-celegans', 'label': 'pax-3', '@id': '/targets/pax-3-celegans/', 'title': 'pax-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4702e407-c805-4329-a00f-984b2524e979', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF028VUJ/ 10007805 Kevin White, UChicago d1b39891aad82cbe89787f5988bb837d https://www.encodeproject.org/files/ENCFF573LDN/@@download/ENCFF573LDN.bigWig released s3://encode-public/2018/03/01/b2d5ba01-d516-4954-9e4e-bfc7232df090/ENCFF573LDN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF735MNH bigWig bigWig read-depth normalized signal ce11 ENCSR443FOO Control ChIP-seq /worm-donors/ENCDO910IPQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185022/'], '@type': ['Target', 'Item'], 'name': 'pax-3-celegans', 'label': 'pax-3', '@id': '/targets/pax-3-celegans/', 'title': 'pax-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4702e407-c805-4329-a00f-984b2524e979', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF028VUJ/ 10039631 Kevin White, UChicago 6693b71655958daa1626cbc6d592621c https://www.encodeproject.org/files/ENCFF735MNH/@@download/ENCFF735MNH.bigWig released s3://encode-public/2018/03/01/412fc86e-3e92-4432-8eec-d814286b3667/ENCFF735MNH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF028VUJ bam bam alignments ce11 ENCSR443FOO Control ChIP-seq /worm-donors/ENCDO910IPQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185022/'], '@type': ['Target', 'Item'], 'name': 'pax-3-celegans', 'label': 'pax-3', '@id': '/targets/pax-3-celegans/', 'title': 'pax-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4702e407-c805-4329-a00f-984b2524e979', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF468LWA/, /files/ENCFF586MOL/ 1193437414 Kevin White, UChicago 72a7adb47e4557559d22e63c3719d738 https://www.encodeproject.org/files/ENCFF028VUJ/@@download/ENCFF028VUJ.bam released s3://encode-public/2018/02/28/c175b371-2a22-4f23-86cd-26fa6e701144/ENCFF028VUJ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF770NPT fastq fastq reads ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF911DDV/ 3270226100 Richard Myers, HAIB de77016a3931d9b131598f3f6c3cc3a3 SRA:SRR6212866 https://www.encodeproject.org/files/ENCFF770NPT/@@download/ENCFF770NPT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/b1e6fe9b-ca3c-480c-b628-95d8b39f1019/ENCFF770NPT.fastq.gz ENCFF911DDV fastq fastq reads ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF770NPT/ 3096915384 Richard Myers, HAIB 4f5d566f757ef959a7e2ec4fc464d90b SRA:SRR6212866 https://www.encodeproject.org/files/ENCFF911DDV/@@download/ENCFF911DDV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/b5fa8068-a211-46cb-9718-ef4b07824711/ENCFF911DDV.fastq.gz ENCFF802FQK bam bam unfiltered alignments hg19 ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF911DDV/, /files/ENCFF770NPT/ 7489923150 ENCODE Processing Pipeline 3b06a5cd8bd7e3b18bacd0c616339d11 https://www.encodeproject.org/files/ENCFF802FQK/@@download/ENCFF802FQK.bam released s3://encode-public/2016/11/08/496096dd-3c70-4bb8-a389-537d1a5becb8/ENCFF802FQK.bam ENCODE3 hg19 archived ENCFF269VXF bam bam unfiltered alignments GRCh38 ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF911DDV/, /files/ENCFF770NPT/ 7524324515 ENCODE Processing Pipeline b2bd87606aea76a82ecb8febbe9c9349 https://www.encodeproject.org/files/ENCFF269VXF/@@download/ENCFF269VXF.bam released s3://encode-public/2016/11/08/19a64d41-7ec1-4e6e-ab5c-39a0386b32f2/ENCFF269VXF.bam ENCODE3 GRCh38 archived ENCFF448GDG bam bam alignments GRCh38 ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF911DDV/, /files/ENCFF770NPT/ 5020078323 ENCODE Processing Pipeline f30fd2e33a17ee898b2b7ffcd108d9a9 https://www.encodeproject.org/files/ENCFF448GDG/@@download/ENCFF448GDG.bam released s3://encode-public/2016/11/08/7c083b2a-a589-4e20-9487-4061e4e3e8ed/ENCFF448GDG.bam ENCODE3 GRCh38 archived ENCFF046ZKX bam bam alignments hg19 ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF911DDV/, /files/ENCFF770NPT/ 5011493796 ENCODE Processing Pipeline 67490c4842a19a9360ceaa2b368f0bca https://www.encodeproject.org/files/ENCFF046ZKX/@@download/ENCFF046ZKX.bam released s3://encode-public/2016/11/08/42e2ef19-ed87-4fe7-a6c4-015c626c9ccb/ENCFF046ZKX.bam ENCODE3 hg19 archived ENCFF669TRZ bam bam unfiltered alignments GRCh38 ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF911DDV/, /files/ENCFF770NPT/, /files/ENCFF110MCL/ 7537648884 ENCODE Processing Pipeline 19b6120b59e5e6c21d202668eb48c762 https://www.encodeproject.org/files/ENCFF669TRZ/@@download/ENCFF669TRZ.bam released s3://encode-public/2020/10/28/21581027-6f71-4a28-9a95-80ddea5bcaff/ENCFF669TRZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF261ZQI bam bam alignments GRCh38 ENCSR009SHE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF911DDV/, /files/ENCFF770NPT/, /files/ENCFF110MCL/ 4764166315 ENCODE Processing Pipeline 64ea65992b029487904d0836b9ea029e https://www.encodeproject.org/files/ENCFF261ZQI/@@download/ENCFF261ZQI.bam released s3://encode-public/2020/10/28/3e02552e-9fb8-47db-b90e-24fec67dbb97/ENCFF261ZQI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF607MXS fastq fastq reads ENCSR219MAS Control ChIP-seq /worm-donors/ENCDO314KLR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176145/'], '@type': ['Target', 'Item'], 'name': 'gei-8-celegans', 'label': 'gei-8', '@id': '/targets/gei-8-celegans/', 'title': 'gei-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4bdaf6ff-de16-4503-8ece-82fc2560c6ed', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 739248783 Kevin White, UChicago 0a1ba2587bfae02bf7244110be5bc668 https://www.encodeproject.org/files/ENCFF607MXS/@@download/ENCFF607MXS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/b68c52b3-a6af-4411-ba51-19d71463d8df/ENCFF607MXS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF059TAK bam bam alignments ce11 ENCSR219MAS Control ChIP-seq /worm-donors/ENCDO314KLR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176145/'], '@type': ['Target', 'Item'], 'name': 'gei-8-celegans', 'label': 'gei-8', '@id': '/targets/gei-8-celegans/', 'title': 'gei-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4bdaf6ff-de16-4503-8ece-82fc2560c6ed', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF607MXS/, /files/ENCFF586MOL/ 952944225 Kevin White, UChicago 945bd69a4446f9eab3f48109cec9b191 https://www.encodeproject.org/files/ENCFF059TAK/@@download/ENCFF059TAK.bam released s3://encode-public/2018/02/28/dd9a3853-697c-4a4a-b48a-c269668f507d/ENCFF059TAK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF981LFQ bigWig bigWig signal of unique reads ce11 ENCSR219MAS Control ChIP-seq /worm-donors/ENCDO314KLR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176145/'], '@type': ['Target', 'Item'], 'name': 'gei-8-celegans', 'label': 'gei-8', '@id': '/targets/gei-8-celegans/', 'title': 'gei-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4bdaf6ff-de16-4503-8ece-82fc2560c6ed', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF059TAK/ 9924423 Kevin White, UChicago b2c60444c495483b85014050a5184e19 https://www.encodeproject.org/files/ENCFF981LFQ/@@download/ENCFF981LFQ.bigWig released s3://encode-public/2018/03/01/1643d341-58ed-42c4-9c93-51e7e5015624/ENCFF981LFQ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF127UKD bigWig bigWig read-depth normalized signal ce11 ENCSR219MAS Control ChIP-seq /worm-donors/ENCDO314KLR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176145/'], '@type': ['Target', 'Item'], 'name': 'gei-8-celegans', 'label': 'gei-8', '@id': '/targets/gei-8-celegans/', 'title': 'gei-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4bdaf6ff-de16-4503-8ece-82fc2560c6ed', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF059TAK/ 9942779 Kevin White, UChicago 37c98e09f7620ff9302acbb522a686eb https://www.encodeproject.org/files/ENCFF127UKD/@@download/ENCFF127UKD.bigWig released s3://encode-public/2018/03/01/56fc0702-e35d-4565-96fa-d301dee52091/ENCFF127UKD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF963WWM fastq fastq reads ENCSR294UCJ Control ChIP-seq /fly-donors/ENCDO848QTU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42542/'], '@type': ['Target', 'Item'], 'name': 'lbe-dmelanogaster', 'label': 'lbe', '@id': '/targets/lbe-dmelanogaster/', 'title': 'lbe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8d35800-3e1e-4d7b-b962-98dc5ac84eb5', 'status': 'released'} dm3 3R 17215699 17321640 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1025492871 Kevin White, UChicago a2a1ccfff1db043231cb4cdbebce778c https://www.encodeproject.org/files/ENCFF963WWM/@@download/ENCFF963WWM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/00a1cd72-d778-4f32-b19d-0f9722f983e8/ENCFF963WWM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF267TNG bam bam alignments dm3 ENCSR294UCJ Control ChIP-seq /fly-donors/ENCDO848QTU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42542/'], '@type': ['Target', 'Item'], 'name': 'lbe-dmelanogaster', 'label': 'lbe', '@id': '/targets/lbe-dmelanogaster/', 'title': 'lbe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8d35800-3e1e-4d7b-b962-98dc5ac84eb5', 'status': 'released'} dm3 3R 17215699 17321640 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF963WWM/ 1455792532 Kevin White, UChicago dda7c3c548948f313f41e64887b5db74 https://www.encodeproject.org/files/ENCFF267TNG/@@download/ENCFF267TNG.bam released s3://encode-public/2015/08/03/3b6c16d1-061c-4df8-be21-ed1504aa5dc0/ENCFF267TNG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF218FQM bigWig bigWig read-depth normalized signal dm3 ENCSR294UCJ Control ChIP-seq /fly-donors/ENCDO848QTU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42542/'], '@type': ['Target', 'Item'], 'name': 'lbe-dmelanogaster', 'label': 'lbe', '@id': '/targets/lbe-dmelanogaster/', 'title': 'lbe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8d35800-3e1e-4d7b-b962-98dc5ac84eb5', 'status': 'released'} dm3 3R 17215699 17321640 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF267TNG/ 15334005 Kevin White, UChicago 9005a3ca68af799e0607d2b40e1e78a3 https://www.encodeproject.org/files/ENCFF218FQM/@@download/ENCFF218FQM.bigWig released s3://encode-public/2015/10/05/920ae43e-ee70-478d-a5c3-b4ce585aff5a/ENCFF218FQM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF217RHY bigWig bigWig signal of unique reads dm3 ENCSR294UCJ Control ChIP-seq /fly-donors/ENCDO848QTU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42542/'], '@type': ['Target', 'Item'], 'name': 'lbe-dmelanogaster', 'label': 'lbe', '@id': '/targets/lbe-dmelanogaster/', 'title': 'lbe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8d35800-3e1e-4d7b-b962-98dc5ac84eb5', 'status': 'released'} dm3 3R 17215699 17321640 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF267TNG/ 15328832 Kevin White, UChicago 57861913908eaa9c15ace31f0cecfc28 https://www.encodeproject.org/files/ENCFF217RHY/@@download/ENCFF217RHY.bigWig released s3://encode-public/2015/10/05/332b0311-d33a-450c-a386-69368ea72e76/ENCFF217RHY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF126WGJ bam bam alignments dm6 ENCSR294UCJ Control ChIP-seq /fly-donors/ENCDO848QTU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42542/'], '@type': ['Target', 'Item'], 'name': 'lbe-dmelanogaster', 'label': 'lbe', '@id': '/targets/lbe-dmelanogaster/', 'title': 'lbe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8d35800-3e1e-4d7b-b962-98dc5ac84eb5', 'status': 'released'} dm3 3R 17215699 17321640 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF963WWM/ 1449883286 Kevin White, UChicago 62ba03d7189fe8ce9b9e5f557b59d415 https://www.encodeproject.org/files/ENCFF126WGJ/@@download/ENCFF126WGJ.bam released s3://encode-public/2016/04/21/8c9e1dcc-d358-4cc2-808b-dbbf06974939/ENCFF126WGJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF422IHD bigWig bigWig read-depth normalized signal dm6 ENCSR294UCJ Control ChIP-seq /fly-donors/ENCDO848QTU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42542/'], '@type': ['Target', 'Item'], 'name': 'lbe-dmelanogaster', 'label': 'lbe', '@id': '/targets/lbe-dmelanogaster/', 'title': 'lbe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8d35800-3e1e-4d7b-b962-98dc5ac84eb5', 'status': 'released'} dm3 3R 17215699 17321640 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF126WGJ/ 17473244 Kevin White, UChicago 41aa6e62afc7cf1aa7b388106d8077dc https://www.encodeproject.org/files/ENCFF422IHD/@@download/ENCFF422IHD.bigWig released s3://encode-public/2016/06/20/bd4b830a-34a7-4415-b814-9f5a595bfb19/ENCFF422IHD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF025DBF bigWig bigWig signal of unique reads dm6 ENCSR294UCJ Control ChIP-seq /fly-donors/ENCDO848QTU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42542/'], '@type': ['Target', 'Item'], 'name': 'lbe-dmelanogaster', 'label': 'lbe', '@id': '/targets/lbe-dmelanogaster/', 'title': 'lbe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8d35800-3e1e-4d7b-b962-98dc5ac84eb5', 'status': 'released'} dm3 3R 17215699 17321640 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF126WGJ/ 17460854 Kevin White, UChicago cfab61f5cb839721271e209ba2cec4f7 https://www.encodeproject.org/files/ENCFF025DBF/@@download/ENCFF025DBF.bigWig released s3://encode-public/2016/06/20/58e34c0f-ce46-41bc-b7ef-343ae6c1bf8f/ENCFF025DBF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF736BUO fastq fastq reads ENCSR020BSJ Control ChIP-seq /fly-donors/ENCDO195AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41105/'], '@type': ['Target', 'Item'], 'name': 'sage-dmelanogaster', 'label': 'sage', '@id': '/targets/sage-dmelanogaster/', 'title': 'sage (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd880f9f4-35a6-49dd-8b06-3442e296d3a4', 'status': 'released'} dm3 3R 5081228 5098884 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1046026884 Kevin White, UChicago 610dad57f17886fd1477e79ce5e4aebb https://www.encodeproject.org/files/ENCFF736BUO/@@download/ENCFF736BUO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/a155e728-213d-4efd-a2f8-d860b10e3249/ENCFF736BUO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF708RHT bam bam alignments dm3 ENCSR020BSJ Control ChIP-seq /fly-donors/ENCDO195AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41105/'], '@type': ['Target', 'Item'], 'name': 'sage-dmelanogaster', 'label': 'sage', '@id': '/targets/sage-dmelanogaster/', 'title': 'sage (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd880f9f4-35a6-49dd-8b06-3442e296d3a4', 'status': 'released'} dm3 3R 5081228 5098884 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF736BUO/ 1486577211 Kevin White, UChicago 5856220678d062bd7683ae3938bdeb76 https://www.encodeproject.org/files/ENCFF708RHT/@@download/ENCFF708RHT.bam released s3://encode-public/2015/08/03/76c20b3e-b5f8-4be5-8bf2-3a2fffd50f92/ENCFF708RHT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF428NQK bigWig bigWig read-depth normalized signal dm3 ENCSR020BSJ Control ChIP-seq /fly-donors/ENCDO195AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41105/'], '@type': ['Target', 'Item'], 'name': 'sage-dmelanogaster', 'label': 'sage', '@id': '/targets/sage-dmelanogaster/', 'title': 'sage (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd880f9f4-35a6-49dd-8b06-3442e296d3a4', 'status': 'released'} dm3 3R 5081228 5098884 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF708RHT/ 15270964 Kevin White, UChicago 0b63a46c3d3af5d1c94dd73ccbad1bfc https://www.encodeproject.org/files/ENCFF428NQK/@@download/ENCFF428NQK.bigWig released s3://encode-public/2015/10/05/f500c218-357e-42cb-bca0-715a3226e36a/ENCFF428NQK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF987EPS bigWig bigWig signal of unique reads dm3 ENCSR020BSJ Control ChIP-seq /fly-donors/ENCDO195AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41105/'], '@type': ['Target', 'Item'], 'name': 'sage-dmelanogaster', 'label': 'sage', '@id': '/targets/sage-dmelanogaster/', 'title': 'sage (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd880f9f4-35a6-49dd-8b06-3442e296d3a4', 'status': 'released'} dm3 3R 5081228 5098884 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF708RHT/ 15277677 Kevin White, UChicago dd98f989a99c882a64e250e9c5a946d5 https://www.encodeproject.org/files/ENCFF987EPS/@@download/ENCFF987EPS.bigWig released s3://encode-public/2015/10/05/0c4a00cc-d8e6-484d-be24-e1140e199b74/ENCFF987EPS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF783SRZ bam bam alignments dm6 ENCSR020BSJ Control ChIP-seq /fly-donors/ENCDO195AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41105/'], '@type': ['Target', 'Item'], 'name': 'sage-dmelanogaster', 'label': 'sage', '@id': '/targets/sage-dmelanogaster/', 'title': 'sage (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd880f9f4-35a6-49dd-8b06-3442e296d3a4', 'status': 'released'} dm3 3R 5081228 5098884 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF736BUO/ 1476855160 Kevin White, UChicago fe8e31fb0ea0c8912494d5907df7fada https://www.encodeproject.org/files/ENCFF783SRZ/@@download/ENCFF783SRZ.bam released s3://encode-public/2016/04/22/f62fa7b6-ecdb-4367-8db1-28da06bd3da0/ENCFF783SRZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF832UPD bigWig bigWig signal of unique reads dm6 ENCSR020BSJ Control ChIP-seq /fly-donors/ENCDO195AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41105/'], '@type': ['Target', 'Item'], 'name': 'sage-dmelanogaster', 'label': 'sage', '@id': '/targets/sage-dmelanogaster/', 'title': 'sage (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd880f9f4-35a6-49dd-8b06-3442e296d3a4', 'status': 'released'} dm3 3R 5081228 5098884 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF783SRZ/ 17377358 Kevin White, UChicago 303915694e59ab4f3362eb0889fdd434 https://www.encodeproject.org/files/ENCFF832UPD/@@download/ENCFF832UPD.bigWig released s3://encode-public/2016/06/21/66ffaeab-6f4d-4890-9122-ff89e8e1575d/ENCFF832UPD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF819PMC bigWig bigWig read-depth normalized signal dm6 ENCSR020BSJ Control ChIP-seq /fly-donors/ENCDO195AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41105/'], '@type': ['Target', 'Item'], 'name': 'sage-dmelanogaster', 'label': 'sage', '@id': '/targets/sage-dmelanogaster/', 'title': 'sage (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd880f9f4-35a6-49dd-8b06-3442e296d3a4', 'status': 'released'} dm3 3R 5081228 5098884 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF783SRZ/ 17382811 Kevin White, UChicago 777de40c1506e2b669c8de30a16f58e1 https://www.encodeproject.org/files/ENCFF819PMC/@@download/ENCFF819PMC.bigWig released s3://encode-public/2016/06/21/0cffa892-20bf-4de4-b1f5-5aff7a9f81af/ENCFF819PMC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF495XMT bam bam alignments GRCh38 ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF077PWW/, /files/ENCFF110MCL/, /files/ENCFF107HYL/ 1149882504 ENCODE Processing Pipeline 99e17f17d79d413f23a717c4a9650718 https://www.encodeproject.org/files/ENCFF495XMT/@@download/ENCFF495XMT.bam released s3://encode-public/2020/10/09/342b76ce-b77e-4b44-8686-be4219e5a5a0/ENCFF495XMT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF107HYL fastq fastq reads ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 953027914 Zhiping Weng, UMass 63ee33410572223777a26d5b8ad9db8b SRA:SRR899568 https://www.encodeproject.org/files/ENCFF107HYL/@@download/ENCFF107HYL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/25/87469f42-25c9-4b5c-a65e-6bd2583fff1b/ENCFF107HYL.fastq.gz low read length ENCFF077PWW fastq fastq reads ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 247915331 Zhiping Weng, UMass ac23f022f4da66741dc3bac8f2e1f0af SRA:SRR899567 https://www.encodeproject.org/files/ENCFF077PWW/@@download/ENCFF077PWW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/25/b973e7d7-d02a-4e95-9269-73a3808be38b/ENCFF077PWW.fastq.gz low read length ENCFF260XZE bam bam unfiltered alignments GRCh38 ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF107HYL/, /files/ENCFF077PWW/ 1510269406 ENCODE Processing Pipeline 5522217377ebfac0d34f6ac29693060e https://www.encodeproject.org/files/ENCFF260XZE/@@download/ENCFF260XZE.bam released s3://encode-public/2016/12/19/5afc042b-f2df-455b-a971-68915bf532a5/ENCFF260XZE.bam ENCODE3 GRCh38 archived low read length ENCFF962WPS bam bam alignments GRCh38 ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF107HYL/, /files/ENCFF077PWW/ 1057040021 ENCODE Processing Pipeline 97fcb02a4b58a021029222fefaa6ab5d https://www.encodeproject.org/files/ENCFF962WPS/@@download/ENCFF962WPS.bam released s3://encode-public/2016/12/19/a32980b2-9374-42f2-8a73-82b7e55c46b4/ENCFF962WPS.bam ENCODE3 GRCh38 archived low read length ENCFF626RWZ bam bam unfiltered alignments hg19 ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF107HYL/, /files/ENCFF077PWW/ 1501152091 ENCODE Processing Pipeline 3c5ac1c23efbc092e593e57d577e2718 https://www.encodeproject.org/files/ENCFF626RWZ/@@download/ENCFF626RWZ.bam released s3://encode-public/2016/12/19/c738dd60-44a8-4386-8500-d39355768abc/ENCFF626RWZ.bam ENCODE3 hg19 archived low read length ENCFF195RKK bam bam alignments hg19 ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF107HYL/, /files/ENCFF077PWW/ 1057312418 ENCODE Processing Pipeline 18ea2924b0c763f554a7a2218ceb1572 https://www.encodeproject.org/files/ENCFF195RKK/@@download/ENCFF195RKK.bam released s3://encode-public/2016/12/19/13c99838-91ef-4331-a5e9-604cb600e860/ENCFF195RKK.bam ENCODE3 hg19 archived low read length ENCFF921WZR tagAlign tagAlign alignments hg19 ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF077PWW/, /files/ENCFF107HYL/ 175313727 Anshul Kundaje, Stanford c81bd6ea740a2b4ec7f96bf61f8e08cb https://www.encodeproject.org/files/ENCFF921WZR/@@download/ENCFF921WZR.tagAlign.gz archived s3://encode-public/2016/02/11/00166d3a-a97d-4e4a-ae80-28abdb455dbf/ENCFF921WZR.tagAlign.gz Lab custom hg19 archived low read length ENCFF430IQJ bam bam unfiltered alignments GRCh38 ENCSR960VLF Control ChIP-seq /human-donors/ENCDO826VAK/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF077PWW/, /files/ENCFF110MCL/, /files/ENCFF107HYL/ 1470820439 ENCODE Processing Pipeline 8514bfcf4bae89c2cd0b9cffaaac8f4a https://www.encodeproject.org/files/ENCFF430IQJ/@@download/ENCFF430IQJ.bam released s3://encode-public/2020/10/09/9d1cc3b4-d9a5-464e-b444-dee491031155/ENCFF430IQJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF477IDS fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 1101449132 Bradley Bernstein, Broad af04087b26f79ffe907329762cd2b7dd SRA:SRR10838478 https://www.encodeproject.org/files/ENCFF477IDS/@@download/ENCFF477IDS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/0e9c96d7-9209-4e4b-9f8b-32cd6ed6c539/ENCFF477IDS.fastq.gz inconsistent platforms ENCFF903QXC fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 1118406825 Bradley Bernstein, Broad 6866246092c3c85cd9d9a08c91f93616 SRA:SRR10838479 https://www.encodeproject.org/files/ENCFF903QXC/@@download/ENCFF903QXC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/c109f73b-d071-4919-be73-24509d030d51/ENCFF903QXC.fastq.gz inconsistent platforms ENCFF310PPF bam bam unfiltered alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF105ODX/, /files/ENCFF877EOG/, /files/ENCFF903QXC/, /files/ENCFF477IDS/, /files/ENCFF643CGH/ 6262494615 ENCODE Processing Pipeline 6c847ca9745309eeccdc1eae105f6306 https://www.encodeproject.org/files/ENCFF310PPF/@@download/ENCFF310PPF.bam released s3://encode-public/2019/02/08/8e3b919b-3bf2-4a2a-b4f3-1f619dcf21d8/ENCFF310PPF.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF319CIP bam bam alignments hg19 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF105ODX/, /files/ENCFF877EOG/, /files/ENCFF903QXC/, /files/ENCFF477IDS/, /files/ENCFF807MUK/ 5133049934 ENCODE Processing Pipeline f24a00f0a002e85422c3f49c37703305 https://www.encodeproject.org/files/ENCFF319CIP/@@download/ENCFF319CIP.bam released s3://encode-public/2019/02/08/a6ae3267-5cf1-4689-9dfa-e10bc3fbf53a/ENCFF319CIP.bam ENCODE3 hg19 archived inconsistent platforms ENCFF904ZLD bam bam alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF105ODX/, /files/ENCFF877EOG/, /files/ENCFF903QXC/, /files/ENCFF477IDS/, /files/ENCFF643CGH/ 5141345478 ENCODE Processing Pipeline f6925be90f8fb18dc36974093f611590 https://www.encodeproject.org/files/ENCFF904ZLD/@@download/ENCFF904ZLD.bam released s3://encode-public/2019/02/08/40507fc9-4377-4401-9cb2-cc25c0c72b85/ENCFF904ZLD.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF615PRL bam bam unfiltered alignments hg19 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF105ODX/, /files/ENCFF877EOG/, /files/ENCFF903QXC/, /files/ENCFF477IDS/, /files/ENCFF807MUK/ 6244973075 ENCODE Processing Pipeline 994f98579a92f41b76831614538bb771 https://www.encodeproject.org/files/ENCFF615PRL/@@download/ENCFF615PRL.bam released s3://encode-public/2019/02/08/46ea5ba9-8928-4ed5-9a76-2d964f0035ae/ENCFF615PRL.bam ENCODE3 hg19 archived inconsistent platforms ENCFF752WEA fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1 76 single-ended 353340876 Bradley Bernstein, Broad 953e97120ba4a7d1c3f750fbba2013a0 SRA:SRR10838472 https://www.encodeproject.org/files/ENCFF752WEA/@@download/ENCFF752WEA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/d7e0badf-93f1-436c-af92-c8700f7e46b8/ENCFF752WEA.fastq.gz inconsistent platforms ENCFF056AEA fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1 76 single-ended 366736376 Bradley Bernstein, Broad d69d46c9327d508b29671ee76446e49c SRA:SRR10838473 https://www.encodeproject.org/files/ENCFF056AEA/@@download/ENCFF056AEA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/69997647-39c9-4bd9-bb1a-7802e92c7320/ENCFF056AEA.fastq.gz inconsistent platforms ENCFF745AVL fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1 76 single-ended 356203693 Bradley Bernstein, Broad 88102bfa453cff1452d541454f5482fd SRA:SRR10838474 https://www.encodeproject.org/files/ENCFF745AVL/@@download/ENCFF745AVL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/9ae47bce-c15b-4119-8123-dca04c6169dd/ENCFF745AVL.fastq.gz inconsistent platforms ENCFF959WCH fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1 76 single-ended 356612301 Bradley Bernstein, Broad 8ba6458552f2e82e4875c728e9085a21 SRA:SRR10838475 https://www.encodeproject.org/files/ENCFF959WCH/@@download/ENCFF959WCH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/98babd9f-ef46-4e8d-bf2d-19fe0da3aedb/ENCFF959WCH.fastq.gz inconsistent platforms ENCFF435QIR bam bam unfiltered alignments hg19 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF807MUK/, /files/ENCFF244UAY/, /files/ENCFF745AVL/, /files/ENCFF996ABS/, /files/ENCFF752WEA/, /files/ENCFF010PMO/, /files/ENCFF056AEA/, /files/ENCFF664EKB/, /files/ENCFF959WCH/ 3113433594 ENCODE Processing Pipeline d401f3ec2a55d09f8c00faac2ada0a39 https://www.encodeproject.org/files/ENCFF435QIR/@@download/ENCFF435QIR.bam released s3://encode-public/2019/08/30/2b994ce8-c8bf-41bb-ae8e-c8c749c1cccd/ENCFF435QIR.bam ENCODE3 hg19 archived inconsistent platforms ENCFF382RFK bam bam unfiltered alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF643CGH/, /files/ENCFF244UAY/, /files/ENCFF745AVL/, /files/ENCFF996ABS/, /files/ENCFF752WEA/, /files/ENCFF010PMO/, /files/ENCFF056AEA/, /files/ENCFF664EKB/, /files/ENCFF959WCH/ 3126120273 ENCODE Processing Pipeline 34c5a02c1eddd4485ebbd4b21ad48fe2 https://www.encodeproject.org/files/ENCFF382RFK/@@download/ENCFF382RFK.bam released s3://encode-public/2019/08/30/6230a240-869a-4e5a-85c1-75bf6f92b62c/ENCFF382RFK.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF166IXM bam bam alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF643CGH/, /files/ENCFF244UAY/, /files/ENCFF745AVL/, /files/ENCFF996ABS/, /files/ENCFF752WEA/, /files/ENCFF010PMO/, /files/ENCFF056AEA/, /files/ENCFF664EKB/, /files/ENCFF959WCH/ 2575585934 ENCODE Processing Pipeline e785270129bf050c07390b4a60b4c431 https://www.encodeproject.org/files/ENCFF166IXM/@@download/ENCFF166IXM.bam released s3://encode-public/2019/08/30/7947e376-4366-4ca3-8ff5-1b36bc81f6bf/ENCFF166IXM.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF199VNI bam bam alignments hg19 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF807MUK/, /files/ENCFF244UAY/, /files/ENCFF745AVL/, /files/ENCFF996ABS/, /files/ENCFF752WEA/, /files/ENCFF010PMO/, /files/ENCFF056AEA/, /files/ENCFF664EKB/, /files/ENCFF959WCH/ 2571763501 ENCODE Processing Pipeline 97f9f00c65e10f37850c21e122a8bcaf https://www.encodeproject.org/files/ENCFF199VNI/@@download/ENCFF199VNI.bam released s3://encode-public/2019/08/30/c4fbb313-46cb-4167-b47e-aebb6bafbe77/ENCFF199VNI.bam ENCODE3 hg19 archived inconsistent platforms ENCFF996ABS fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_2 76 single-ended 421334479 Bradley Bernstein, Broad c28584065ddb6b9c700413843374fad8 SRA:SRR10838468 https://www.encodeproject.org/files/ENCFF996ABS/@@download/ENCFF996ABS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/501723f6-3541-48c6-ba24-2c51ff5bdbd9/ENCFF996ABS.fastq.gz inconsistent platforms ENCFF010PMO fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_2 76 single-ended 419874641 Bradley Bernstein, Broad 3b90216995d6e51978584d0c20e22198 SRA:SRR10838469 https://www.encodeproject.org/files/ENCFF010PMO/@@download/ENCFF010PMO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/c6cd9a31-66e1-4dee-b162-ae87f7302e0e/ENCFF010PMO.fastq.gz inconsistent platforms ENCFF244UAY fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_2 76 single-ended 418619913 Bradley Bernstein, Broad 9568471751a7e32b65e889814cd1bb2b SRA:SRR10838470 https://www.encodeproject.org/files/ENCFF244UAY/@@download/ENCFF244UAY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/d46c39c0-91ae-4643-8d25-466254cf54d5/ENCFF244UAY.fastq.gz inconsistent platforms ENCFF664EKB fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_2 76 single-ended 413500691 Bradley Bernstein, Broad d1b13fc193264833e5e008de861e58fd SRA:SRR10838471 https://www.encodeproject.org/files/ENCFF664EKB/@@download/ENCFF664EKB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/fc81c70a-734f-4cdb-9471-e194a4e8f3fc/ENCFF664EKB.fastq.gz inconsistent platforms ENCFF877EOG fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 2124218697 Bradley Bernstein, Broad 74469d738c245ce22534a80a26bdbe33 SRA:SRR10838476 https://www.encodeproject.org/files/ENCFF877EOG/@@download/ENCFF877EOG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/7e2377e9-c6d7-4d09-bc74-4cb53956e8ae/ENCFF877EOG.fastq.gz inconsistent platforms ENCFF105ODX fastq fastq reads ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 2127748425 Bradley Bernstein, Broad e32aeab696d2fd79143fc54350b67921 SRA:SRR10838477 https://www.encodeproject.org/files/ENCFF105ODX/@@download/ENCFF105ODX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/07/4c1876ba-c9a0-4649-b40f-0ff3f977e653/ENCFF105ODX.fastq.gz inconsistent platforms ENCFF438YFP bam bam unfiltered alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF477IDS/, /files/ENCFF877EOG/, /files/ENCFF110MCL/, /files/ENCFF903QXC/, /files/ENCFF105ODX/ 6257690079 ENCODE Processing Pipeline 4efd3d1fe6aa0ca93e73c0cefc7c5462 https://www.encodeproject.org/files/ENCFF438YFP/@@download/ENCFF438YFP.bam released s3://encode-public/2020/09/19/e6e7788a-3fec-477b-81ae-0349e2c2b371/ENCFF438YFP.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF478LDM bam bam unfiltered alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF244UAY/, /files/ENCFF664EKB/, /files/ENCFF745AVL/, /files/ENCFF752WEA/, /files/ENCFF110MCL/, /files/ENCFF056AEA/, /files/ENCFF010PMO/, /files/ENCFF959WCH/, /files/ENCFF996ABS/ 3102496671 ENCODE Processing Pipeline 487535dc7fe21a576464d8d9cd182997 https://www.encodeproject.org/files/ENCFF478LDM/@@download/ENCFF478LDM.bam released s3://encode-public/2020/09/19/0bba7d77-2810-4cef-81a6-534773fd4e7e/ENCFF478LDM.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF690EXZ bam bam alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF477IDS/, /files/ENCFF877EOG/, /files/ENCFF110MCL/, /files/ENCFF903QXC/, /files/ENCFF105ODX/ 5179545519 ENCODE Processing Pipeline 5b4cbbe5516e2013a529440976c1772b https://www.encodeproject.org/files/ENCFF690EXZ/@@download/ENCFF690EXZ.bam released s3://encode-public/2020/09/19/c52ee708-69c0-4732-ab5a-26dc341ff8fb/ENCFF690EXZ.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF078NUJ bam bam alignments GRCh38 ENCSR803JPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF244UAY/, /files/ENCFF664EKB/, /files/ENCFF745AVL/, /files/ENCFF752WEA/, /files/ENCFF110MCL/, /files/ENCFF056AEA/, /files/ENCFF010PMO/, /files/ENCFF959WCH/, /files/ENCFF996ABS/ 2569956810 ENCODE Processing Pipeline c513a5b3009d4f9acf309485f47f909c https://www.encodeproject.org/files/ENCFF078NUJ/@@download/ENCFF078NUJ.bam released s3://encode-public/2020/09/19/1fc72746-beb3-43e5-99d5-fa1e44e1e8fe/ENCFF078NUJ.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF399MFA fastq fastq reads ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 480716145 Bradley Bernstein, Broad 2bc04990d43c9c716ae976c060f587eb SRA:SRR10837854 https://www.encodeproject.org/files/ENCFF399MFA/@@download/ENCFF399MFA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/1002beef-32c1-404e-aa56-4f0e3e80afe8/ENCFF399MFA.fastq.gz ENCFF622NUM fastq fastq reads ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_2 76 single-ended 471386879 Bradley Bernstein, Broad 161447a9c9cd59fd1e5b12c77a2209f5 SRA:SRR10837855 https://www.encodeproject.org/files/ENCFF622NUM/@@download/ENCFF622NUM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/87536122-11c6-42a4-9096-16f195317051/ENCFF622NUM.fastq.gz ENCFF666UVR bam bam unfiltered alignments GRCh38 ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF399MFA/, /files/ENCFF456ROW/, /files/ENCFF622NUM/, /files/ENCFF491TAF/, /files/ENCFF640NZR/, /files/ENCFF944CMN/ 4334177304 ENCODE Processing Pipeline cb03467f2dc9d6de09ee1a981a899b2d https://www.encodeproject.org/files/ENCFF666UVR/@@download/ENCFF666UVR.bam released s3://encode-public/2019/02/08/db3dd595-f224-4e3a-b186-25eb03c645ce/ENCFF666UVR.bam ENCODE3 GRCh38 archived ENCFF121ZJR bam bam alignments hg19 ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF399MFA/, /files/ENCFF807MUK/, /files/ENCFF456ROW/, /files/ENCFF622NUM/, /files/ENCFF491TAF/, /files/ENCFF640NZR/, /files/ENCFF944CMN/ 3636742174 ENCODE Processing Pipeline c9ea17134d9f840364994ac953a0a232 https://www.encodeproject.org/files/ENCFF121ZJR/@@download/ENCFF121ZJR.bam released s3://encode-public/2019/02/08/125e985c-e4fc-4b18-aad5-240b10e6d699/ENCFF121ZJR.bam ENCODE3 hg19 archived ENCFF575JRW bam bam unfiltered alignments hg19 ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF399MFA/, /files/ENCFF807MUK/, /files/ENCFF456ROW/, /files/ENCFF622NUM/, /files/ENCFF491TAF/, /files/ENCFF640NZR/, /files/ENCFF944CMN/ 4322186142 ENCODE Processing Pipeline 8b30d33433d7451d2cdef15dc7777bc9 https://www.encodeproject.org/files/ENCFF575JRW/@@download/ENCFF575JRW.bam released s3://encode-public/2019/02/08/bda1b988-d4e6-4036-a5fc-c6737d023818/ENCFF575JRW.bam ENCODE3 hg19 archived ENCFF054TED bam bam alignments GRCh38 ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF399MFA/, /files/ENCFF456ROW/, /files/ENCFF622NUM/, /files/ENCFF491TAF/, /files/ENCFF640NZR/, /files/ENCFF944CMN/ 3642102112 ENCODE Processing Pipeline 32ba5ae160d6fc7819d19600f43da6f9 https://www.encodeproject.org/files/ENCFF054TED/@@download/ENCFF054TED.bam released s3://encode-public/2019/02/08/297454e3-a154-4e72-a34c-4e0e88b3a7b0/ENCFF054TED.bam ENCODE3 GRCh38 archived ENCFF640NZR fastq fastq reads ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 716621597 Bradley Bernstein, Broad 31c001686a126a04cd9a7e3823807f05 SRA:SRR10837856 https://www.encodeproject.org/files/ENCFF640NZR/@@download/ENCFF640NZR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/d6bd7f5e-aa5c-4661-86cf-15bee6367c5c/ENCFF640NZR.fastq.gz ENCFF944CMN fastq fastq reads ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 654724713 Bradley Bernstein, Broad 8cb547c21dfd0502cb51c8588b14911b SRA:SRR10837857 https://www.encodeproject.org/files/ENCFF944CMN/@@download/ENCFF944CMN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/41f50cf2-06a8-4616-a073-182361e62d62/ENCFF944CMN.fastq.gz ENCFF456ROW fastq fastq reads ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 1168625294 Bradley Bernstein, Broad 884ce259e6f6e904231f4f0eb9dd8361 SRA:SRR10837858 https://www.encodeproject.org/files/ENCFF456ROW/@@download/ENCFF456ROW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/0a9a7805-672a-40d0-8fc4-1dd0269bffef/ENCFF456ROW.fastq.gz ENCFF491TAF fastq fastq reads ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1 76 single-ended 1150627602 Bradley Bernstein, Broad db7f2e37dce095f62db6bfc8aec9edd7 SRA:SRR10837859 https://www.encodeproject.org/files/ENCFF491TAF/@@download/ENCFF491TAF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/12/06/616bf45d-7564-47ef-aff6-0dcd49ea7469/ENCFF491TAF.fastq.gz ENCFF150LKW bam bam unfiltered alignments GRCh38 ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF399MFA/, /files/ENCFF640NZR/, /files/ENCFF110MCL/, /files/ENCFF456ROW/, /files/ENCFF622NUM/, /files/ENCFF491TAF/, /files/ENCFF944CMN/ 4377744698 ENCODE Processing Pipeline 13d2db8c803444c09649865d1c3e4e4b https://www.encodeproject.org/files/ENCFF150LKW/@@download/ENCFF150LKW.bam released s3://encode-public/2020/09/20/03667710-0d36-4da0-9288-7081df53ac9a/ENCFF150LKW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF782ZUX bam bam alignments GRCh38 ENCSR385ODY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2019-02-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF399MFA/, /files/ENCFF640NZR/, /files/ENCFF110MCL/, /files/ENCFF456ROW/, /files/ENCFF622NUM/, /files/ENCFF491TAF/, /files/ENCFF944CMN/ 3718323943 ENCODE Processing Pipeline 064e849409ed3aa68d7ae7835da17813 https://www.encodeproject.org/files/ENCFF782ZUX/@@download/ENCFF782ZUX.bam released s3://encode-public/2020/09/20/3005facf-5b98-40d1-8589-9faa56d9f02b/ENCFF782ZUX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF989NQS fastq fastq reads ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 544774964 Zhiping Weng, UMass b4accd9b5709293a87aeb59ae25a6601 SRA:SRR899560 https://www.encodeproject.org/files/ENCFF989NQS/@@download/ENCFF989NQS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/ea396576-9f5a-4ae5-b79a-60d6dc21fec0/ENCFF989NQS.fastq.gz low read depth, low read length ENCFF479AHA fastq fastq reads ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 299355456 Zhiping Weng, UMass a553600868f3d8adc292f95b8941d835 SRA:SRR899561 https://www.encodeproject.org/files/ENCFF479AHA/@@download/ENCFF479AHA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/d3613a97-4c29-4c01-8b9f-2d33f143619b/ENCFF479AHA.fastq.gz low read depth, low read length ENCFF413GHX bam bam unfiltered alignments hg19 ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF989NQS/, /files/ENCFF479AHA/ 1066777361 ENCODE Processing Pipeline 4cbf63a123cecc82e3fdfe4468507a02 https://www.encodeproject.org/files/ENCFF413GHX/@@download/ENCFF413GHX.bam released s3://encode-public/2016/12/19/3daa0636-b50a-4be6-a994-478658aaf73e/ENCFF413GHX.bam ENCODE3 hg19 archived low read depth, low read length ENCFF959NWK bam bam unfiltered alignments GRCh38 ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF989NQS/, /files/ENCFF479AHA/ 1072742269 ENCODE Processing Pipeline cc2f28819510f5a11aa746e32e7c86db https://www.encodeproject.org/files/ENCFF959NWK/@@download/ENCFF959NWK.bam released s3://encode-public/2016/12/19/e0304840-2253-4bdf-81b5-ff5da2e161ea/ENCFF959NWK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF316RTX bam bam alignments hg19 ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF989NQS/, /files/ENCFF479AHA/ 753952560 ENCODE Processing Pipeline c83b1f9fff11f02c4446ae7c064a648c https://www.encodeproject.org/files/ENCFF316RTX/@@download/ENCFF316RTX.bam released s3://encode-public/2016/12/19/bcf4df7f-38a3-488c-9af2-74bff1f5b16f/ENCFF316RTX.bam ENCODE3 hg19 archived low read depth, low read length ENCFF072XSV bam bam alignments GRCh38 ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF989NQS/, /files/ENCFF479AHA/ 753662845 ENCODE Processing Pipeline 0ccfea2f2c332a28ece6bc29ce30a32d https://www.encodeproject.org/files/ENCFF072XSV/@@download/ENCFF072XSV.bam released s3://encode-public/2016/12/19/876af5e5-73e0-4e17-abe6-54643405d79f/ENCFF072XSV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF697RUK tagAlign tagAlign alignments hg19 ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF479AHA/, /files/ENCFF989NQS/ 127681694 Anshul Kundaje, Stanford 22cd53d1aece7f2cf6ab649acd0b7bc7 https://www.encodeproject.org/files/ENCFF697RUK/@@download/ENCFF697RUK.tagAlign.gz archived s3://encode-public/2016/02/11/4af8e336-7413-4438-9490-85dd6e76ac0c/ENCFF697RUK.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF379UOQ bam bam unfiltered alignments GRCh38 ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF479AHA/, /files/ENCFF989NQS/ 1042170095 ENCODE Processing Pipeline 6499981a659b41cfd9d8b4471e0cb2bf https://www.encodeproject.org/files/ENCFF379UOQ/@@download/ENCFF379UOQ.bam released s3://encode-public/2020/10/08/83b1f105-b09a-4a16-9807-c6117897cdcf/ENCFF379UOQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF814JNL bam bam alignments GRCh38 ENCSR278VUZ Control ChIP-seq /human-donors/ENCDO022PVU/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF479AHA/, /files/ENCFF989NQS/ 822928151 ENCODE Processing Pipeline 10e95945ccaf00f072759fb442e66aeb https://www.encodeproject.org/files/ENCFF814JNL/@@download/ENCFF814JNL.bam released s3://encode-public/2020/10/08/84e2460b-179d-4f60-b3a9-2395ddd978c0/ENCFF814JNL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF759CDF fastq fastq reads ENCSR776VHJ Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 paired-ended 1 /files/ENCFF679SGH/ 12777269629 Christine Disteche, UW 3c5b27eabd7aa36a0d0d47d189579727 https://www.encodeproject.org/files/ENCFF759CDF/@@download/ENCFF759CDF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/08/c2d74370-07c7-4c4e-a832-b05debc6c0a2/ENCFF759CDF.fastq.gz ENCFF679SGH fastq fastq reads ENCSR776VHJ Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 paired-ended 2 /files/ENCFF759CDF/ 12872180916 Christine Disteche, UW e6c160b85223e9cf77249ab1dac83b35 https://www.encodeproject.org/files/ENCFF679SGH/@@download/ENCFF679SGH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/07/09/2a87bba1-5792-40e3-9711-1f21d992692e/ENCFF679SGH.fastq.gz ENCFF787TJW bam bam unfiltered alignments mm10 ENCSR776VHJ Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 /files/ENCFF759CDF/, /files/ENCFF309GLL/, /files/ENCFF679SGH/ 28511840116 ENCODE Processing Pipeline 63d8d087f47d5f351833634a848551f4 https://www.encodeproject.org/files/ENCFF787TJW/@@download/ENCFF787TJW.bam released s3://encode-public/2020/10/18/2cec644f-8684-4653-b325-fdf919699405/ENCFF787TJW.bam ENCODE4 v1.5.1 mm10 released ENCFF934ZZC bam bam alignments mm10 ENCSR776VHJ Control ChIP-seq /mouse-donors/ENCDO350LAJ/ EFO:0005481 Patski cell line Mus musculus DNA 2021-07-01 community 1 1_1 75 /files/ENCFF759CDF/, /files/ENCFF309GLL/, /files/ENCFF679SGH/ 11241485138 ENCODE Processing Pipeline eb9c9ebb507e562e109ac450db9e19e3 https://www.encodeproject.org/files/ENCFF934ZZC/@@download/ENCFF934ZZC.bam released s3://encode-public/2020/10/18/5af01730-6cc0-428d-ba6b-3ddf30b320f9/ENCFF934ZZC.bam ENCODE4 v1.5.1 mm10 released ENCFF670LVT fastq fastq reads ENCSR402VXN Control ChIP-seq /worm-donors/ENCDO436YWM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} ce11 I 10364641 10403723 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 1372735516 Kevin White, UChicago 53012bd06567cc250dd088609c603471 https://www.encodeproject.org/files/ENCFF670LVT/@@download/ENCFF670LVT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/3c5d9f8c-a46c-4641-92f8-3ec46e318a4e/ENCFF670LVT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF595RUN bam bam alignments ce10 ENCSR402VXN Control ChIP-seq /worm-donors/ENCDO436YWM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} ce11 I 10364641 10403723 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF670LVT/ 1810417458 Kevin White, UChicago eedd0c0c627816475c9056061941f2d2 https://www.encodeproject.org/files/ENCFF595RUN/@@download/ENCFF595RUN.bam released s3://encode-public/2017/10/06/cd02f70d-4395-49de-8942-ff6750e3644e/ENCFF595RUN.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF058ELO bam bam alignments ce11 ENCSR402VXN Control ChIP-seq /worm-donors/ENCDO436YWM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} ce11 I 10364641 10403723 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF670LVT/ 1811820406 Kevin White, UChicago c1baa615b1a90ea9877d09399c61f3c0 https://www.encodeproject.org/files/ENCFF058ELO/@@download/ENCFF058ELO.bam released s3://encode-public/2017/10/06/a6df8f5b-b697-4610-a615-40a0305a0f2a/ENCFF058ELO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF207KOU bigWig bigWig read-depth normalized signal ce10 ENCSR402VXN Control ChIP-seq /worm-donors/ENCDO436YWM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} ce11 I 10364641 10403723 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF595RUN/ 9972874 Kevin White, UChicago 9300e2a04a835889455c85cc43889540 https://www.encodeproject.org/files/ENCFF207KOU/@@download/ENCFF207KOU.bigWig released s3://encode-public/2017/10/09/317270b6-408e-47fb-82cf-31c672077f99/ENCFF207KOU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF852EMU bigWig bigWig signal of unique reads ce10 ENCSR402VXN Control ChIP-seq /worm-donors/ENCDO436YWM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} ce11 I 10364641 10403723 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF595RUN/ 9949650 Kevin White, UChicago 6ae92506a0d7343ab5c789e6d5715215 https://www.encodeproject.org/files/ENCFF852EMU/@@download/ENCFF852EMU.bigWig released s3://encode-public/2017/10/09/b620e89d-30fd-4e01-a14c-e87bfe4edb14/ENCFF852EMU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF101WMM bigWig bigWig read-depth normalized signal ce11 ENCSR402VXN Control ChIP-seq /worm-donors/ENCDO436YWM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} ce11 I 10364641 10403723 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF058ELO/ 9966044 Kevin White, UChicago 5b2c8a1f60df2396ae285a636407fc68 https://www.encodeproject.org/files/ENCFF101WMM/@@download/ENCFF101WMM.bigWig released s3://encode-public/2017/10/09/06f1ebb9-59df-4a3a-9b85-ff7ed4f4f262/ENCFF101WMM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF170XAU bigWig bigWig signal of unique reads ce11 ENCSR402VXN Control ChIP-seq /worm-donors/ENCDO436YWM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} ce11 I 10364641 10403723 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF058ELO/ 9954919 Kevin White, UChicago 20c18ae6a4300a21f9cd3d5d5b272625 https://www.encodeproject.org/files/ENCFF170XAU/@@download/ENCFF170XAU.bigWig released s3://encode-public/2017/10/09/da5baf13-0584-4441-9f98-7d1142c4c2ec/ENCFF170XAU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF948YKM fastq fastq reads ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 696686307 Zhiping Weng, UMass 1134183e7e25f1036f69d50786b73236 SRA:SRR609627 https://www.encodeproject.org/files/ENCFF948YKM/@@download/ENCFF948YKM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/c2f6703e-864f-45f5-93cb-8fef8e77c2f7/ENCFF948YKM.fastq.gz low read length ENCFF874ZHI bam bam unfiltered alignments GRCh38 ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF759TWG/, /files/ENCFF110MCL/, /files/ENCFF948YKM/ 1592343802 ENCODE Processing Pipeline c04f82dcd062d5005eecde27bf50ea41 https://www.encodeproject.org/files/ENCFF874ZHI/@@download/ENCFF874ZHI.bam released s3://encode-public/2020/10/08/af04eb03-89b2-4ed2-b587-2f12a723d77f/ENCFF874ZHI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF759TWG fastq fastq reads ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 608489569 Zhiping Weng, UMass 974cea237dd865cd7d714191abb63c00 SRA:SRR609626 https://www.encodeproject.org/files/ENCFF759TWG/@@download/ENCFF759TWG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/17/250da9e5-3c1c-4468-9d0a-e62ed93f6f06/ENCFF759TWG.fastq.gz low read length ENCFF494ZCT bam bam unfiltered alignments GRCh38 ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF948YKM/, /files/ENCFF643CGH/, /files/ENCFF759TWG/ 1645757762 ENCODE Processing Pipeline 3725019c2cc27bf38f3f371284e0a1d4 https://www.encodeproject.org/files/ENCFF494ZCT/@@download/ENCFF494ZCT.bam released s3://encode-public/2016/12/19/a17f0472-4429-49da-bd56-a173d88211b6/ENCFF494ZCT.bam ENCODE3 GRCh38 archived low read length ENCFF842GEC bam bam unfiltered alignments hg19 ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF948YKM/, /files/ENCFF807MUK/, /files/ENCFF759TWG/ 1633139615 ENCODE Processing Pipeline db9522b8abf380757cafb978f294f888 https://www.encodeproject.org/files/ENCFF842GEC/@@download/ENCFF842GEC.bam released s3://encode-public/2016/12/19/019e0513-bebe-4add-a16e-8e859646a08b/ENCFF842GEC.bam ENCODE3 hg19 archived low read length ENCFF601DLY bam bam alignments GRCh38 ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF948YKM/, /files/ENCFF643CGH/, /files/ENCFF759TWG/ 1056538349 ENCODE Processing Pipeline 5f849dc980b6ddadfb5668308c05618d https://www.encodeproject.org/files/ENCFF601DLY/@@download/ENCFF601DLY.bam released s3://encode-public/2016/12/19/b6c9dcd7-a69a-4e4d-bc89-a8d4db2dace3/ENCFF601DLY.bam ENCODE3 GRCh38 archived low read length ENCFF772RBZ bam bam alignments hg19 ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF948YKM/, /files/ENCFF807MUK/, /files/ENCFF759TWG/ 1056539290 ENCODE Processing Pipeline 674d4f696b43d78414831bdbf92a3318 https://www.encodeproject.org/files/ENCFF772RBZ/@@download/ENCFF772RBZ.bam released s3://encode-public/2016/12/19/d7b8291e-b734-416e-baae-0020b41925fb/ENCFF772RBZ.bam ENCODE3 hg19 archived low read length ENCFF434YLM tagAlign tagAlign alignments hg19 ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF759TWG/, /files/ENCFF948YKM/ 172723865 Anshul Kundaje, Stanford 01d5543fc642a19501bd13a8a802df8c https://www.encodeproject.org/files/ENCFF434YLM/@@download/ENCFF434YLM.tagAlign.gz archived s3://encode-public/2016/02/11/639ab082-d226-41c0-8368-68031afc12db/ENCFF434YLM.tagAlign.gz Lab custom hg19 archived low read length ENCFF896LUO bam bam alignments GRCh38 ENCSR726FHN Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000623 natural killer cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF759TWG/, /files/ENCFF110MCL/, /files/ENCFF948YKM/ 1166253659 ENCODE Processing Pipeline 2a9742f9711b76ed419c7f6a8796d6eb https://www.encodeproject.org/files/ENCFF896LUO/@@download/ENCFF896LUO.bam released s3://encode-public/2020/10/08/3061792a-3feb-41f3-bce2-062d4987bd7c/ENCFF896LUO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001KBT bam bam alignments mm9 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 50 /files/ENCFF001KCH/ 2017379044 Bing Ren, UCSD 53fe19dc13590d374bc7abaaae8dc064 https://www.encodeproject.org/files/ENCFF001KBT/@@download/ENCFF001KBT.bam archived s3://encode-public/2011/12/23/2f918fd1-d5d2-41cc-8211-c249a014aea3/ENCFF001KBT.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001KBW bam bam alignments mm9 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 50 /files/ENCFF001KCI/ 1938498904 Bing Ren, UCSD 3b3aff2cb875bc32ea96eeaa69e72536 https://www.encodeproject.org/files/ENCFF001KBW/@@download/ENCFF001KBW.bam archived s3://encode-public/2011/12/23/b5b71463-1444-41d8-a633-96a90d39ed2a/ENCFF001KBW.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001KBX bigWig bigWig signal mm9 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1, 2 1_1, 2_1 /files/ENCFF001KBW/, /files/ENCFF001KBT/ 72240378 Bing Ren, UCSD 8c4671ec882cdead6236d794876f15ac https://www.encodeproject.org/files/ENCFF001KBX/@@download/ENCFF001KBX.bigWig archived s3://encode-public/2011/12/23/7b46cd4d-668e-43ce-a844-5dc6a0c8f62c/ENCFF001KBX.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001KCH fastq fastq reads ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 50 single-ended 2076751483 Bing Ren, UCSD 63d82fd449f79a29589f9cbd39804546 https://www.encodeproject.org/files/ENCFF001KCH/@@download/ENCFF001KCH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/160a6242-a0ac-4aae-a2dd-586e31ab978d/ENCFF001KCH.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001KCI fastq fastq reads ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 50 single-ended 2032616586 Bing Ren, UCSD 137be8b67e4459a5f3b29413373da7a5 https://www.encodeproject.org/files/ENCFF001KCI/@@download/ENCFF001KCI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/ab96d672-ebfa-4ccd-bac1-f6b217c135e9/ENCFF001KCI.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF238BKZ bam bam unfiltered alignments mm10-minimal ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 50 /files/ENCFF001KCH/, /files/ENCFF516HDY/ 2108164229 J. Michael Cherry, Stanford d8cd783c097f6977224b161445d452e6 https://www.encodeproject.org/files/ENCFF238BKZ/@@download/ENCFF238BKZ.bam archived s3://encode-public/2015/02/04/5dcb4065-c12e-42d3-b9f1-45dd50f0a21f/ENCFF238BKZ.bam ENCODE3 mm10-minimal archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF228QAS bam bam unfiltered alignments mm10-minimal ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 50 /files/ENCFF001KCI/, /files/ENCFF516HDY/ 2008476181 J. Michael Cherry, Stanford 0c64542dc3ba6041837bc6a62e3740ff https://www.encodeproject.org/files/ENCFF228QAS/@@download/ENCFF228QAS.bam archived s3://encode-public/2015/02/04/585b902e-3863-4d99-b2fb-4ba2d3cd5a5c/ENCFF228QAS.bam ENCODE3 mm10-minimal archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF017WTH bam bam alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF001KCI/ 879577147 ENCODE Processing Pipeline 1756c24980e8c1a18f81cdf85d9c3062 https://www.encodeproject.org/files/ENCFF017WTH/@@download/ENCFF017WTH.bam released s3://encode-public/2016/04/28/57db44a3-c3b5-4751-817c-1d64b1448ae8/ENCFF017WTH.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF089REQ bam bam alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX 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complexity ENCFF047KSZ bam bam unfiltered alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF001KCI/ 2011669278 ENCODE Processing Pipeline 7d4d465bd8e69ae5280fd00aa1cf9248 https://www.encodeproject.org/files/ENCFF047KSZ/@@download/ENCFF047KSZ.bam released s3://encode-public/2016/07/06/6c8bd152-fb56-4f11-8d4f-bb68f09add7a/ENCFF047KSZ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF038TSY bam bam unfiltered alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF001KCI/ 2010051908 ENCODE Processing Pipeline e9f622b710f153be8fa5152518e44993 https://www.encodeproject.org/files/ENCFF038TSY/@@download/ENCFF038TSY.bam released s3://encode-public/2020/10/12/40e118a0-7ebf-4239-9cff-fc3b9d55a32c/ENCFF038TSY.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF805CZV bam bam unfiltered alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KCI/ 1668934426 ENCODE Processing Pipeline 8d4e37e7dcf8c19eaec7947c5cbcb273 https://www.encodeproject.org/files/ENCFF805CZV/@@download/ENCFF805CZV.bam released s3://encode-public/2016/11/28/76c5e1f1-7c2b-457b-8bda-ec98935b4333/ENCFF805CZV.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF734VIL bam bam unfiltered alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KCH/ 1749248569 ENCODE Processing Pipeline 2ed4d813564389b35d80cb9a8a990204 https://www.encodeproject.org/files/ENCFF734VIL/@@download/ENCFF734VIL.bam released s3://encode-public/2016/11/28/0b10e0b2-1408-4b23-9fa2-2d3d5cc31e50/ENCFF734VIL.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF260OJF bam bam alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KCI/ 681297756 ENCODE Processing Pipeline 9f8e7c36ddcac4630374a4759412ec41 https://www.encodeproject.org/files/ENCFF260OJF/@@download/ENCFF260OJF.bam released s3://encode-public/2016/11/28/37801e97-12d0-4307-bca8-e64fc40a84ef/ENCFF260OJF.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF020THJ bam bam alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KCH/ 806541609 ENCODE Processing Pipeline 5a22e4dd63a3db00856ea4760bc4e735 https://www.encodeproject.org/files/ENCFF020THJ/@@download/ENCFF020THJ.bam released s3://encode-public/2016/11/28/52890428-97f6-48d5-aa69-e5518e00915d/ENCFF020THJ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF312JYN bam bam unfiltered alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF001KCH/ 2108070210 ENCODE Processing Pipeline d2eed74401f0d6b0b0449fd21f0cf64c https://www.encodeproject.org/files/ENCFF312JYN/@@download/ENCFF312JYN.bam released s3://encode-public/2020/10/12/224b2f24-3781-4dc1-a564-16c4caecf7fd/ENCFF312JYN.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF438YZI bam bam alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF001KCH/ 1071058663 ENCODE Processing Pipeline 39d460a91cdc124279db325d6fcf09fd https://www.encodeproject.org/files/ENCFF438YZI/@@download/ENCFF438YZI.bam released s3://encode-public/2020/10/12/53cc9774-55b6-4e89-ad7c-82acb5030741/ENCFF438YZI.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF944FRI bam bam alignments mm10 ENCSR000CGG Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF001KCI/ 904316120 ENCODE Processing Pipeline 4ef512d4eb5c52388dd14f8e73a54e79 https://www.encodeproject.org/files/ENCFF944FRI/@@download/ENCFF944FRI.bam released s3://encode-public/2020/10/12/08c9cc61-f371-408a-ab48-8353096b8270/ENCFF944FRI.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF551XVL fastq fastq reads ENCSR651DQT Control ChIP-seq /worm-donors/ENCDO684DIV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174971/'], '@type': ['Target', 'Item'], 'name': 'ztf-22-celegans', 'label': 'ztf-22', '@id': '/targets/ztf-22-celegans/', 'title': 'ztf-22 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '226ced89-4221-4960-9832-78d1a5393411', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 602947401 Kevin White, UChicago 270380cb222135117663002acb98c5b5 https://www.encodeproject.org/files/ENCFF551XVL/@@download/ENCFF551XVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/23122390-d490-4181-ae1e-e33be1f9dbd0/ENCFF551XVL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF366XVY bam bam alignments ce11 ENCSR651DQT Control ChIP-seq /worm-donors/ENCDO684DIV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174971/'], '@type': ['Target', 'Item'], 'name': 'ztf-22-celegans', 'label': 'ztf-22', '@id': '/targets/ztf-22-celegans/', 'title': 'ztf-22 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '226ced89-4221-4960-9832-78d1a5393411', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF551XVL/, /files/ENCFF586MOL/ 787631429 Kevin White, UChicago 07494b2737e9ad2973e76f1c33372702 https://www.encodeproject.org/files/ENCFF366XVY/@@download/ENCFF366XVY.bam released s3://encode-public/2018/03/01/2d0d4489-45aa-469c-a1d4-0a9839bf1578/ENCFF366XVY.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF349MUM bigWig bigWig read-depth normalized signal ce11 ENCSR651DQT Control ChIP-seq /worm-donors/ENCDO684DIV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174971/'], '@type': ['Target', 'Item'], 'name': 'ztf-22-celegans', 'label': 'ztf-22', '@id': '/targets/ztf-22-celegans/', 'title': 'ztf-22 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '226ced89-4221-4960-9832-78d1a5393411', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF366XVY/ 9918723 Kevin White, UChicago 8264d3417e673ebf894ed6d9b652321b https://www.encodeproject.org/files/ENCFF349MUM/@@download/ENCFF349MUM.bigWig released s3://encode-public/2018/03/01/efd7f0da-1ae1-427a-b76f-370d507983b3/ENCFF349MUM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF476MAT bigWig bigWig signal of unique reads ce11 ENCSR651DQT Control ChIP-seq /worm-donors/ENCDO684DIV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174971/'], '@type': ['Target', 'Item'], 'name': 'ztf-22-celegans', 'label': 'ztf-22', '@id': '/targets/ztf-22-celegans/', 'title': 'ztf-22 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '226ced89-4221-4960-9832-78d1a5393411', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF366XVY/ 9919338 Kevin White, UChicago bb5958ccfb3e4bda30b61f2c044dde0f https://www.encodeproject.org/files/ENCFF476MAT/@@download/ENCFF476MAT.bigWig released s3://encode-public/2018/03/01/c4b76672-554a-446b-bc90-399b46488bac/ENCFF476MAT.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF261GUY bam bam alignments ce11 ENCSR215YKL Control ChIP-seq /worm-donors/ENCDO286CZH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173541/'], '@type': ['Target', 'Item'], 'name': 'ceh-83-celegans', 'label': 'ceh-83', '@id': '/targets/ceh-83-celegans/', 'title': 'ceh-83 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '84f16ca1-dffb-4926-8b2e-88b36525294c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF815OCX/, /files/ENCFF586MOL/ 294987522 Kevin White, UChicago 6ae08affb49bd7f39edbc629c6f872f4 https://www.encodeproject.org/files/ENCFF261GUY/@@download/ENCFF261GUY.bam released s3://encode-public/2018/02/28/dc942c93-d3b1-444e-bc96-da7278988f81/ENCFF261GUY.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF815OCX fastq fastq reads ENCSR215YKL Control ChIP-seq /worm-donors/ENCDO286CZH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173541/'], '@type': ['Target', 'Item'], 'name': 'ceh-83-celegans', 'label': 'ceh-83', '@id': '/targets/ceh-83-celegans/', 'title': 'ceh-83 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '84f16ca1-dffb-4926-8b2e-88b36525294c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 227556689 Kevin White, UChicago 5c5648a8933b9bd8e018f57cee970c62 https://www.encodeproject.org/files/ENCFF815OCX/@@download/ENCFF815OCX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/b9962d20-f55c-4988-84cc-310799696f2a/ENCFF815OCX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF853MTJ bigWig bigWig read-depth normalized signal ce11 ENCSR215YKL Control ChIP-seq /worm-donors/ENCDO286CZH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173541/'], '@type': ['Target', 'Item'], 'name': 'ceh-83-celegans', 'label': 'ceh-83', '@id': '/targets/ceh-83-celegans/', 'title': 'ceh-83 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '84f16ca1-dffb-4926-8b2e-88b36525294c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF261GUY/ 10004094 Kevin White, UChicago 6ce45bfa56069154a4858524d701445a https://www.encodeproject.org/files/ENCFF853MTJ/@@download/ENCFF853MTJ.bigWig released s3://encode-public/2018/03/01/ac16ad3e-4225-44a4-8690-f4882bbf118f/ENCFF853MTJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF080NHD bigWig bigWig signal of unique reads ce11 ENCSR215YKL Control ChIP-seq /worm-donors/ENCDO286CZH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173541/'], '@type': ['Target', 'Item'], 'name': 'ceh-83-celegans', 'label': 'ceh-83', '@id': '/targets/ceh-83-celegans/', 'title': 'ceh-83 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '84f16ca1-dffb-4926-8b2e-88b36525294c', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF261GUY/ 10037810 Kevin White, UChicago 213b532926d227717bbef2954a81470d https://www.encodeproject.org/files/ENCFF080NHD/@@download/ENCFF080NHD.bigWig released s3://encode-public/2018/03/01/f4803f47-aa96-44dd-8b0c-249d07dd1429/ENCFF080NHD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF801KGF fastq fastq reads ENCSR607FIB Control ChIP-seq /fly-donors/ENCDO989XOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45039/'], '@type': ['Target', 'Item'], 'name': 'Sox100B-dmelanogaster', 'label': 'Sox100B', '@id': '/targets/Sox100B-dmelanogaster/', 'title': 'Sox100B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6eca0060-e332-48cb-b8da-91bbe9cc34d2', 'status': 'released'} dm3 3R 26861926 26951047 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2544282913 Kevin White, UChicago cbe33111cc79c9de939a6fb3961fc9c0 https://www.encodeproject.org/files/ENCFF801KGF/@@download/ENCFF801KGF.fastq.gz Illumina HiSeq 4000 /files/ENCFF706VQY/ released s3://encode-public/2018/02/01/aca461b4-8fcb-42a6-a4d7-51a79d24161e/ENCFF801KGF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF062BNF bam bam alignments dm6 ENCSR607FIB Control ChIP-seq /fly-donors/ENCDO989XOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45039/'], '@type': ['Target', 'Item'], 'name': 'Sox100B-dmelanogaster', 'label': 'Sox100B', '@id': '/targets/Sox100B-dmelanogaster/', 'title': 'Sox100B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6eca0060-e332-48cb-b8da-91bbe9cc34d2', 'status': 'released'} dm3 3R 26861926 26951047 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF801KGF/, /files/ENCFF479RCH/ 3463170345 Kevin White, UChicago f85dddc21a96f3a50494b0b0b9e004cb https://www.encodeproject.org/files/ENCFF062BNF/@@download/ENCFF062BNF.bam released s3://encode-public/2018/02/02/da4a5aa0-10d7-4adb-9328-4fc8df520fcb/ENCFF062BNF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF185HYO bigWig bigWig read-depth normalized signal dm6 ENCSR607FIB Control ChIP-seq /fly-donors/ENCDO989XOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45039/'], '@type': ['Target', 'Item'], 'name': 'Sox100B-dmelanogaster', 'label': 'Sox100B', '@id': '/targets/Sox100B-dmelanogaster/', 'title': 'Sox100B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6eca0060-e332-48cb-b8da-91bbe9cc34d2', 'status': 'released'} dm3 3R 26861926 26951047 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF062BNF/ 17843237 Kevin White, UChicago a4495ae5f2266bed9af49ddaee42ecf8 https://www.encodeproject.org/files/ENCFF185HYO/@@download/ENCFF185HYO.bigWig released s3://encode-public/2018/02/02/347ec47e-1122-4391-bf52-e5fd9b427e51/ENCFF185HYO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF097CAO bigWig bigWig signal of unique reads dm6 ENCSR607FIB Control ChIP-seq /fly-donors/ENCDO989XOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45039/'], '@type': ['Target', 'Item'], 'name': 'Sox100B-dmelanogaster', 'label': 'Sox100B', '@id': '/targets/Sox100B-dmelanogaster/', 'title': 'Sox100B (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6eca0060-e332-48cb-b8da-91bbe9cc34d2', 'status': 'released'} dm3 3R 26861926 26951047 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF062BNF/ 17835856 Kevin White, UChicago c90622495be26fde9a28e0d8ead83a56 https://www.encodeproject.org/files/ENCFF097CAO/@@download/ENCFF097CAO.bigWig released s3://encode-public/2018/02/02/2583267d-f448-41f1-baf7-cfb0d2dafc98/ENCFF097CAO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000XFI bam bam alignments hg19 ENCSR000EZN Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XOO/ 923264925 Sherman Weissman, Yale 7499f9a1e2c414d2e90b9b05157f7987 https://www.encodeproject.org/files/ENCFF000XFI/@@download/ENCFF000XFI.bam archived s3://encode-public/2010/12/02/d410c8b1-c07e-4f90-89d2-2574730441d6/ENCFF000XFI.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000XFJ bigWig bigWig signal hg19 ENCSR000EZN Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 345700602 Sherman Weissman, Yale 535e2cc339fdff80755d223177369a61 https://www.encodeproject.org/files/ENCFF000XFJ/@@download/ENCFF000XFJ.bigWig archived s3://encode-public/2010/12/02/b22c6c6a-534f-42ce-a75d-d590e3ae0171/ENCFF000XFJ.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000XOO fastq fastq reads ENCSR000EZN Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 697556204 Sherman Weissman, Yale b0299cffd3b95a5a7022d1eef163906a https://www.encodeproject.org/files/ENCFF000XOO/@@download/ENCFF000XOO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/e39a8c9c-885f-45cf-9ebc-2cf965ba694a/ENCFF000XOO.fastq.gz low read depth insufficient read length ENCFF610EFV bam bam unfiltered alignments GRCh38 ENCSR000EZN Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000XOO/ 928403402 ENCODE Processing Pipeline 166d067d5ffb23e9924ad0d6595e17f2 https://www.encodeproject.org/files/ENCFF610EFV/@@download/ENCFF610EFV.bam released s3://encode-public/2016/10/26/d5469149-4f1e-416d-8d90-b21c4494b632/ENCFF610EFV.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF529KRU bam bam alignments GRCh38 ENCSR000EZN Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000XOO/ 510369857 ENCODE Processing Pipeline 0fe902dd7d6a214452f6c2b4881923f4 https://www.encodeproject.org/files/ENCFF529KRU/@@download/ENCFF529KRU.bam released s3://encode-public/2016/10/26/d0e228b9-3b0c-4e58-9bd7-aca81e25aade/ENCFF529KRU.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF683YHY bam bam unfiltered alignments GRCh38 ENCSR000EZN Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000XOO/ 855609594 ENCODE Processing Pipeline eafe5c02f7ba7ce8c32d76ee0a6cff17 https://www.encodeproject.org/files/ENCFF683YHY/@@download/ENCFF683YHY.bam released s3://encode-public/2020/10/27/548b6a2b-e266-4787-a8d1-4830336121c8/ENCFF683YHY.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF959VBL bam bam alignments GRCh38 ENCSR000EZN Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000XOO/ 517368097 ENCODE Processing Pipeline d149c6f422432ae4bd9da7d341e983f4 https://www.encodeproject.org/files/ENCFF959VBL/@@download/ENCFF959VBL.bam released s3://encode-public/2020/10/27/c0b84049-cf35-4442-ab81-0f08e367e6e8/ENCFF959VBL.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF994GOL fastq fastq reads ENCSR546SLI Control ChIP-seq /worm-donors/ENCDO380GBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188246/'], '@type': ['Target', 'Item'], 'name': 'zim-3-celegans', 'label': 'zim-3', '@id': '/targets/zim-3-celegans/', 'title': 'zim-3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f294e29a-3078-4f65-885b-f3631b1f64e6', 'status': 'released'} ce11 IV 10533841 10574303 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 337510155 Kevin White, UChicago 28ebe73569e6515ce83545f77166d29c https://www.encodeproject.org/files/ENCFF994GOL/@@download/ENCFF994GOL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/10/05/177adbc3-1506-48d4-88a0-ddf83e7d7514/ENCFF994GOL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF233EOK bam bam alignments ce10 ENCSR546SLI Control ChIP-seq /worm-donors/ENCDO380GBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188246/'], '@type': ['Target', 'Item'], 'name': 'zim-3-celegans', 'label': 'zim-3', '@id': '/targets/zim-3-celegans/', 'title': 'zim-3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f294e29a-3078-4f65-885b-f3631b1f64e6', 'status': 'released'} ce11 IV 10533841 10574303 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF987UMF/, /files/ENCFF994GOL/ 437776646 Kevin White, UChicago 83d41560ad74f2f0528d36b3cb5607f9 https://www.encodeproject.org/files/ENCFF233EOK/@@download/ENCFF233EOK.bam released s3://encode-public/2017/10/06/97edf484-66bb-4adc-8c32-bb13bbe3b7f3/ENCFF233EOK.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF520VCA bam bam alignments ce11 ENCSR546SLI Control ChIP-seq /worm-donors/ENCDO380GBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188246/'], '@type': ['Target', 'Item'], 'name': 'zim-3-celegans', 'label': 'zim-3', '@id': '/targets/zim-3-celegans/', 'title': 'zim-3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f294e29a-3078-4f65-885b-f3631b1f64e6', 'status': 'released'} ce11 IV 10533841 10574303 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586MOL/, /files/ENCFF994GOL/ 438129049 Kevin White, UChicago 370fb6ddbb0efe6036a573bd65878803 https://www.encodeproject.org/files/ENCFF520VCA/@@download/ENCFF520VCA.bam released s3://encode-public/2017/10/07/0f61c538-a029-4c0f-ab34-b7e7e3d1cbf4/ENCFF520VCA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF419HMF bigWig bigWig read-depth normalized signal ce10 ENCSR546SLI Control ChIP-seq /worm-donors/ENCDO380GBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188246/'], '@type': ['Target', 'Item'], 'name': 'zim-3-celegans', 'label': 'zim-3', '@id': '/targets/zim-3-celegans/', 'title': 'zim-3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f294e29a-3078-4f65-885b-f3631b1f64e6', 'status': 'released'} ce11 IV 10533841 10574303 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF233EOK/ 9955858 Kevin White, UChicago 7ce7761ab241aea84a70e6716c7dfb8a https://www.encodeproject.org/files/ENCFF419HMF/@@download/ENCFF419HMF.bigWig released s3://encode-public/2017/10/09/add8a3d4-8325-4c53-8c43-05810138f0cf/ENCFF419HMF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF184QMJ bigWig bigWig signal of unique reads ce10 ENCSR546SLI Control ChIP-seq /worm-donors/ENCDO380GBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188246/'], '@type': ['Target', 'Item'], 'name': 'zim-3-celegans', 'label': 'zim-3', '@id': '/targets/zim-3-celegans/', 'title': 'zim-3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f294e29a-3078-4f65-885b-f3631b1f64e6', 'status': 'released'} ce11 IV 10533841 10574303 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF233EOK/ 9970529 Kevin White, UChicago 9c74467e59228ed87c3a777cba73ae31 https://www.encodeproject.org/files/ENCFF184QMJ/@@download/ENCFF184QMJ.bigWig released s3://encode-public/2017/10/09/7ff597d0-f2a9-4acb-a3d5-7aa85d1bed75/ENCFF184QMJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF818HCU bigWig bigWig signal of unique reads ce11 ENCSR546SLI Control ChIP-seq /worm-donors/ENCDO380GBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188246/'], '@type': ['Target', 'Item'], 'name': 'zim-3-celegans', 'label': 'zim-3', '@id': '/targets/zim-3-celegans/', 'title': 'zim-3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f294e29a-3078-4f65-885b-f3631b1f64e6', 'status': 'released'} ce11 IV 10533841 10574303 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF520VCA/ 9967913 Kevin White, UChicago e24bdbb3e164aa339f9919193295ca49 https://www.encodeproject.org/files/ENCFF818HCU/@@download/ENCFF818HCU.bigWig released s3://encode-public/2017/10/09/f8d35d0d-a680-4868-8fc5-8cfd5c1f5d45/ENCFF818HCU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF186MGP bigWig bigWig read-depth normalized signal ce11 ENCSR546SLI Control ChIP-seq /worm-donors/ENCDO380GBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188246/'], '@type': ['Target', 'Item'], 'name': 'zim-3-celegans', 'label': 'zim-3', '@id': '/targets/zim-3-celegans/', 'title': 'zim-3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f294e29a-3078-4f65-885b-f3631b1f64e6', 'status': 'released'} ce11 IV 10533841 10574303 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF520VCA/ 9949258 Kevin White, UChicago 041b9cc44d56253afb821654f04b4f60 https://www.encodeproject.org/files/ENCFF186MGP/@@download/ENCFF186MGP.bigWig released s3://encode-public/2017/10/09/a4d07509-e71e-4086-8afe-4eba08ed495b/ENCFF186MGP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF083KQX fastq fastq reads ENCSR826HHX Control ChIP-seq /worm-donors/ENCDO096SXJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175612/'], '@type': ['Target', 'Item'], 'name': 'T23F11.4-celegans', 'label': 'T23F11.4', '@id': '/targets/T23F11.4-celegans/', 'title': 'T23F11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1c58e4e6-1790-4654-9068-032fa6b1a0a4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 549452935 Kevin White, UChicago 55f35c017c637f0d4dc398629b10ff04 https://www.encodeproject.org/files/ENCFF083KQX/@@download/ENCFF083KQX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/715fd377-dfb8-4a27-8fa0-48c611c2138e/ENCFF083KQX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF694VVE bam bam alignments ce11 ENCSR826HHX Control ChIP-seq /worm-donors/ENCDO096SXJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175612/'], '@type': ['Target', 'Item'], 'name': 'T23F11.4-celegans', 'label': 'T23F11.4', '@id': '/targets/T23F11.4-celegans/', 'title': 'T23F11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1c58e4e6-1790-4654-9068-032fa6b1a0a4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF083KQX/, /files/ENCFF586MOL/ 715720475 Kevin White, UChicago a2d646e7eaa538b6ed3d9dbc0ad8ea93 https://www.encodeproject.org/files/ENCFF694VVE/@@download/ENCFF694VVE.bam released s3://encode-public/2018/03/01/99d4a23d-e4bd-4c1b-8532-ae947d1f2528/ENCFF694VVE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF084TOP bigWig bigWig read-depth normalized signal ce11 ENCSR826HHX Control ChIP-seq /worm-donors/ENCDO096SXJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175612/'], '@type': ['Target', 'Item'], 'name': 'T23F11.4-celegans', 'label': 'T23F11.4', '@id': '/targets/T23F11.4-celegans/', 'title': 'T23F11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1c58e4e6-1790-4654-9068-032fa6b1a0a4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF694VVE/ 9929377 Kevin White, UChicago d076048ceccf35793d77dc153d0afaad https://www.encodeproject.org/files/ENCFF084TOP/@@download/ENCFF084TOP.bigWig released s3://encode-public/2018/03/01/8be865b1-e6fd-41e3-968c-f2c7023bb3dd/ENCFF084TOP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF610SPI bigWig bigWig signal of unique reads ce11 ENCSR826HHX Control ChIP-seq /worm-donors/ENCDO096SXJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175612/'], '@type': ['Target', 'Item'], 'name': 'T23F11.4-celegans', 'label': 'T23F11.4', '@id': '/targets/T23F11.4-celegans/', 'title': 'T23F11.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '1c58e4e6-1790-4654-9068-032fa6b1a0a4', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF694VVE/ 9927906 Kevin White, UChicago 00d39942d849f2eb93f4ec7e51044d25 https://www.encodeproject.org/files/ENCFF610SPI/@@download/ENCFF610SPI.bigWig released s3://encode-public/2018/03/01/be20edba-f971-48c9-b539-eb49bf14a3ad/ENCFF610SPI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF416KXO fastq fastq reads ENCSR598ZNC Control ChIP-seq /fly-donors/ENCDO829EKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42143/'], '@type': ['Target', 'Item'], 'name': 'CG17802-dmelanogaster', 'label': 'CG17802', '@id': '/targets/CG17802-dmelanogaster/', 'title': 'CG17802 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c61d0a78-395c-49a6-a629-e2cd9ae47b1e', 'status': 'released'} dm3 3R 13612950 13634669 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 826836646 Kevin White, UChicago 5625ffead25818b73de382458e401dff https://www.encodeproject.org/files/ENCFF416KXO/@@download/ENCFF416KXO.fastq.gz Illumina HiSeq 4000 /files/ENCFF174GFT/, /files/ENCFF490ZJJ/ released s3://encode-public/2018/05/29/15ad13af-d08e-4fd3-9da1-b5f7875436ba/ENCFF416KXO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF852WED bam bam alignments dm6 ENCSR598ZNC Control ChIP-seq /fly-donors/ENCDO829EKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42143/'], '@type': ['Target', 'Item'], 'name': 'CG17802-dmelanogaster', 'label': 'CG17802', '@id': '/targets/CG17802-dmelanogaster/', 'title': 'CG17802 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c61d0a78-395c-49a6-a629-e2cd9ae47b1e', 'status': 'released'} dm3 3R 13612950 13634669 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF416KXO/, /files/ENCFF479RCH/ 1121141958 Kevin White, UChicago 9aa91e92ac844705a860c6d5b5d0c62c https://www.encodeproject.org/files/ENCFF852WED/@@download/ENCFF852WED.bam released s3://encode-public/2018/05/29/4e080796-da03-4263-8af5-a89c30b700e7/ENCFF852WED.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF017SHV bigWig bigWig signal of unique reads dm6 ENCSR598ZNC Control ChIP-seq /fly-donors/ENCDO829EKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42143/'], '@type': ['Target', 'Item'], 'name': 'CG17802-dmelanogaster', 'label': 'CG17802', '@id': '/targets/CG17802-dmelanogaster/', 'title': 'CG17802 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c61d0a78-395c-49a6-a629-e2cd9ae47b1e', 'status': 'released'} dm3 3R 13612950 13634669 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF852WED/ 17622898 Kevin White, UChicago 4f1ce67205b8e205be00e2c775147cb2 https://www.encodeproject.org/files/ENCFF017SHV/@@download/ENCFF017SHV.bigWig released s3://encode-public/2018/05/30/9dbe66d6-5278-4905-acf0-5f3099513a46/ENCFF017SHV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF055UCO bigWig bigWig read-depth normalized signal dm6 ENCSR598ZNC Control ChIP-seq /fly-donors/ENCDO829EKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42143/'], '@type': ['Target', 'Item'], 'name': 'CG17802-dmelanogaster', 'label': 'CG17802', '@id': '/targets/CG17802-dmelanogaster/', 'title': 'CG17802 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c61d0a78-395c-49a6-a629-e2cd9ae47b1e', 'status': 'released'} dm3 3R 13612950 13634669 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF852WED/ 17670912 Kevin White, UChicago 9e7bc18e71294fa4442a684ddea5a2ea https://www.encodeproject.org/files/ENCFF055UCO/@@download/ENCFF055UCO.bigWig released s3://encode-public/2018/05/30/7085a8a0-8f3b-4a96-9bdc-5fba1148649c/ENCFF055UCO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF863QDS fastq fastq reads ENCSR461VPV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1219354321 Zhiping Weng, UMass 7c1923dcf3385f3d6fccc1a88d75df44 SRA:SRR1045842 https://www.encodeproject.org/files/ENCFF863QDS/@@download/ENCFF863QDS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/9170b179-2f28-48be-9c2a-e27c63c13e58/ENCFF863QDS.fastq.gz low read depth, low read length ENCFF453CVV bam bam unfiltered alignments GRCh38 ENCSR461VPV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF863QDS/, /files/ENCFF643CGH/ 1524531933 ENCODE Processing Pipeline a80f5af01949179e92786da8b270b9fa https://www.encodeproject.org/files/ENCFF453CVV/@@download/ENCFF453CVV.bam released s3://encode-public/2016/12/19/edf8f697-f9cf-4faa-95ba-8375fa471781/ENCFF453CVV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF662URX bam bam unfiltered alignments hg19 ENCSR461VPV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF863QDS/, /files/ENCFF807MUK/ 1514665413 ENCODE Processing Pipeline 648c4316b2b2ce7c63bbeb651236f032 https://www.encodeproject.org/files/ENCFF662URX/@@download/ENCFF662URX.bam released s3://encode-public/2016/12/19/a1a97fa5-66a4-4b16-aac4-21fcbdd9f536/ENCFF662URX.bam ENCODE3 hg19 archived low read depth, low read length ENCFF180QGB bam bam alignments GRCh38 ENCSR461VPV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF863QDS/, /files/ENCFF643CGH/ 899085233 ENCODE Processing Pipeline 9ab03f981289fc6a9bfea67303feb253 https://www.encodeproject.org/files/ENCFF180QGB/@@download/ENCFF180QGB.bam released s3://encode-public/2016/12/19/370fda29-30e4-4ac9-8f5f-d39bf6e1f51d/ENCFF180QGB.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF606JEQ bam bam alignments hg19 ENCSR461VPV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF863QDS/, /files/ENCFF807MUK/ 899377833 ENCODE Processing Pipeline 0fd1e78a3acb2efac26a2c8a54467f1d https://www.encodeproject.org/files/ENCFF606JEQ/@@download/ENCFF606JEQ.bam released s3://encode-public/2016/12/19/1b6fdd24-3ee6-4a0c-b992-21170be12f50/ENCFF606JEQ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF564TVR bam bam unfiltered alignments GRCh38 ENCSR461VPV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF863QDS/ 1465740021 ENCODE Processing Pipeline 531cd46fb4f39900a6fa6bee4b84b5bd https://www.encodeproject.org/files/ENCFF564TVR/@@download/ENCFF564TVR.bam released s3://encode-public/2020/10/08/b4b8db08-558d-435a-a153-54a222acb7b2/ENCFF564TVR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF153PJI bam bam alignments GRCh38 ENCSR461VPV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF863QDS/ 1003835992 ENCODE Processing Pipeline 20e21790c0f537b5e7c9cfa5938595c7 https://www.encodeproject.org/files/ENCFF153PJI/@@download/ENCFF153PJI.bam released s3://encode-public/2020/10/08/7cb07d66-00d6-4373-93e3-2ee7e8eab8c8/ENCFF153PJI.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF226SKJ tagAlign tagAlign alignments hg19 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF003YFN/ 165906441 Anshul Kundaje, Stanford dd573b5b07e8bc070d19730ed0428312 https://www.encodeproject.org/files/ENCFF226SKJ/@@download/ENCFF226SKJ.tagAlign.gz archived s3://encode-public/2016/05/02/04088db1-2b43-4128-9dad-877b7f4e22e7/ENCFF226SKJ.tagAlign.gz Lab custom hg19 archived low read length ENCFF997CQH tagAlign tagAlign alignments hg19 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 /files/ENCFF352RHK/ 176872287 Anshul Kundaje, Stanford b3cc8e19643ed7666d351c70ae30963f https://www.encodeproject.org/files/ENCFF997CQH/@@download/ENCFF997CQH.tagAlign.gz archived s3://encode-public/2016/05/02/ccb34f69-fcaf-49f9-bf71-8698056e24d3/ENCFF997CQH.tagAlign.gz Lab custom hg19 archived low read length ENCFF352RHK fastq fastq reads ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 single-ended 1335977759 Zhiping Weng, UMass 71d01663ea005a9c6359e80b7dbf58c6 SRA:SRR067974 https://www.encodeproject.org/files/ENCFF352RHK/@@download/ENCFF352RHK.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/11/67d8d208-d0ad-47db-aa3c-0e93d37b053c/ENCFF352RHK.fastq.gz low read length ENCFF003YFN fastq fastq reads ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 923366975 Zhiping Weng, UMass cc461fdd51467d9c2e91b8ee119c9f7e SRA:SRR067973 https://www.encodeproject.org/files/ENCFF003YFN/@@download/ENCFF003YFN.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/a5cd02d4-dd36-444c-99f8-9da39994b19f/ENCFF003YFN.fastq.gz low read length ENCFF286ZEQ bam bam unfiltered alignments hg19 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF352RHK/ 1674488227 ENCODE Processing Pipeline 244728d4607ced5bc0609cbbb153f32e https://www.encodeproject.org/files/ENCFF286ZEQ/@@download/ENCFF286ZEQ.bam released s3://encode-public/2016/12/19/8581b474-2808-4290-bc46-90dc5a5205b9/ENCFF286ZEQ.bam ENCODE3 hg19 archived low read length ENCFF952DJU bam bam unfiltered alignments GRCh38 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF352RHK/ 1686018376 ENCODE Processing Pipeline bce1d7d0bb0cad4acaac0df6c89f6486 https://www.encodeproject.org/files/ENCFF952DJU/@@download/ENCFF952DJU.bam released s3://encode-public/2016/12/19/d2dcffa4-3bb5-4a90-8fbb-ea0134fe6dfd/ENCFF952DJU.bam ENCODE3 GRCh38 archived low read length ENCFF430UXH bam bam unfiltered alignments GRCh38 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF003YFN/ 1176251952 ENCODE Processing Pipeline 987750923903dc06f8f7dae10406f09e https://www.encodeproject.org/files/ENCFF430UXH/@@download/ENCFF430UXH.bam released s3://encode-public/2016/12/19/c4fca194-8a4b-453b-b768-6bc1101e34aa/ENCFF430UXH.bam ENCODE3 GRCh38 archived low read length ENCFF385DFR bam bam unfiltered alignments hg19 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF003YFN/ 1172150478 ENCODE Processing Pipeline b3d85524d68088d679d9f596a6d4456c https://www.encodeproject.org/files/ENCFF385DFR/@@download/ENCFF385DFR.bam released s3://encode-public/2016/12/19/8534cd7e-2bd8-4ab7-bcee-ebcc534bba43/ENCFF385DFR.bam ENCODE3 hg19 archived low read length ENCFF092DGI bam bam alignments hg19 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF352RHK/ 975747432 ENCODE Processing Pipeline 77e2212958744d4f4eaf317f4312a5ab https://www.encodeproject.org/files/ENCFF092DGI/@@download/ENCFF092DGI.bam released s3://encode-public/2016/12/19/ca61df3c-44bf-4633-9f29-c14e79b212ca/ENCFF092DGI.bam ENCODE3 hg19 archived low read length ENCFF110QNK bam bam alignments GRCh38 ENCSR131IUA Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF003YFN/ 834275513 ENCODE Processing Pipeline 1ec6fab30ac42c73e8c15ec2d90f5cf3 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https://www.encodeproject.org/files/ENCFF323WTY/@@download/ENCFF323WTY.bam released s3://encode-public/2020/09/19/fc3d33eb-fc3c-49a9-8af0-c15089bb878f/ENCFF323WTY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF047RIR bam bam alignments GRCh38 ENCSR545WFH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF018QFS/, /files/ENCFF110MCL/, /files/ENCFF634HPE/, /files/ENCFF431RAR/, /files/ENCFF882WTZ/ 3486076426 ENCODE Processing Pipeline aebda83e682a62e5e5287b0ad2e031b8 https://www.encodeproject.org/files/ENCFF047RIR/@@download/ENCFF047RIR.bam released s3://encode-public/2020/09/19/15b34921-583d-48ad-a524-853b1c3ab0af/ENCFF047RIR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF324KXJ bam bam alignments GRCh38 ENCSR545WFH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2018-12-19 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF450RXF/, /files/ENCFF110MCL/, /files/ENCFF504JSH/, /files/ENCFF555FHA/, /files/ENCFF369DCD/, /files/ENCFF403VBF/, /files/ENCFF530YRV/ 5925475127 ENCODE Processing Pipeline 14e29bdd413aa0506e52c474531f93b5 https://www.encodeproject.org/files/ENCFF324KXJ/@@download/ENCFF324KXJ.bam released s3://encode-public/2020/09/19/481f5dde-da27-46d0-8ea1-cc99a5f38e00/ENCFF324KXJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF291MFY fastq fastq reads ENCSR184BVA Control ChIP-seq /fly-donors/ENCDO361LUW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35147/'], '@type': ['Target', 'Item'], 'name': 'tup-dmelanogaster', 'label': 'tup', '@id': '/targets/tup-dmelanogaster/', 'title': 'tup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3288e566-3ed2-4871-9da0-af3c237994c7', 'status': 'released'} dm3 2L 18837003 18943333 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 704399758 Kevin White, UChicago 5948066bccadd67d01dda5cf3145deb6 https://www.encodeproject.org/files/ENCFF291MFY/@@download/ENCFF291MFY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f468c470-4d46-451e-8cfd-ceff2cb8517a/ENCFF291MFY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF377FTR bam bam alignments dm3 ENCSR184BVA Control ChIP-seq /fly-donors/ENCDO361LUW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35147/'], '@type': ['Target', 'Item'], 'name': 'tup-dmelanogaster', 'label': 'tup', '@id': '/targets/tup-dmelanogaster/', 'title': 'tup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3288e566-3ed2-4871-9da0-af3c237994c7', 'status': 'released'} dm3 2L 18837003 18943333 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF291MFY/ 1034573946 Kevin White, UChicago 177c21982e16b4b62d0b993416013bac https://www.encodeproject.org/files/ENCFF377FTR/@@download/ENCFF377FTR.bam released s3://encode-public/2015/08/03/d8b71fd7-ea10-44b9-b1d3-a2e077bb416b/ENCFF377FTR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF062AMH bigWig bigWig read-depth normalized signal dm3 ENCSR184BVA Control ChIP-seq /fly-donors/ENCDO361LUW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35147/'], '@type': ['Target', 'Item'], 'name': 'tup-dmelanogaster', 'label': 'tup', '@id': '/targets/tup-dmelanogaster/', 'title': 'tup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3288e566-3ed2-4871-9da0-af3c237994c7', 'status': 'released'} dm3 2L 18837003 18943333 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF377FTR/ 15351372 Kevin White, UChicago f8aedbadd9a7cac96c4492668ad903d4 https://www.encodeproject.org/files/ENCFF062AMH/@@download/ENCFF062AMH.bigWig released s3://encode-public/2015/10/05/33fb2921-e883-4556-92eb-e47d6ff9a194/ENCFF062AMH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF821KCC bigWig bigWig signal of unique reads dm3 ENCSR184BVA Control ChIP-seq /fly-donors/ENCDO361LUW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35147/'], '@type': ['Target', 'Item'], 'name': 'tup-dmelanogaster', 'label': 'tup', '@id': '/targets/tup-dmelanogaster/', 'title': 'tup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3288e566-3ed2-4871-9da0-af3c237994c7', 'status': 'released'} dm3 2L 18837003 18943333 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF377FTR/ 15352480 Kevin White, UChicago 8f93424f057c64029a8e2d71a8cdf1e7 https://www.encodeproject.org/files/ENCFF821KCC/@@download/ENCFF821KCC.bigWig released s3://encode-public/2015/10/05/401e5908-a012-4963-b519-3bb32940e0f6/ENCFF821KCC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF995JMX bam bam alignments dm6 ENCSR184BVA Control ChIP-seq /fly-donors/ENCDO361LUW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35147/'], '@type': ['Target', 'Item'], 'name': 'tup-dmelanogaster', 'label': 'tup', '@id': '/targets/tup-dmelanogaster/', 'title': 'tup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3288e566-3ed2-4871-9da0-af3c237994c7', 'status': 'released'} dm3 2L 18837003 18943333 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF291MFY/ 1023095486 Kevin White, UChicago 1c584ca84c9e2e7979518f40606b8f28 https://www.encodeproject.org/files/ENCFF995JMX/@@download/ENCFF995JMX.bam released s3://encode-public/2016/04/20/646b9e6f-3770-4d34-83bb-88f54b5e635d/ENCFF995JMX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF856WKV bigWig bigWig signal of unique reads dm6 ENCSR184BVA Control ChIP-seq /fly-donors/ENCDO361LUW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35147/'], '@type': ['Target', 'Item'], 'name': 'tup-dmelanogaster', 'label': 'tup', '@id': '/targets/tup-dmelanogaster/', 'title': 'tup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3288e566-3ed2-4871-9da0-af3c237994c7', 'status': 'released'} dm3 2L 18837003 18943333 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF995JMX/ 17455065 Kevin White, UChicago 4f00699fa1b287690c8bc3adcb265f84 https://www.encodeproject.org/files/ENCFF856WKV/@@download/ENCFF856WKV.bigWig released s3://encode-public/2016/06/20/d3ab2e7b-2668-4101-b84e-c6fad6a260a9/ENCFF856WKV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF249UOH bigWig bigWig read-depth normalized signal dm6 ENCSR184BVA Control ChIP-seq /fly-donors/ENCDO361LUW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35147/'], '@type': ['Target', 'Item'], 'name': 'tup-dmelanogaster', 'label': 'tup', '@id': '/targets/tup-dmelanogaster/', 'title': 'tup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3288e566-3ed2-4871-9da0-af3c237994c7', 'status': 'released'} dm3 2L 18837003 18943333 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF995JMX/ 17450058 Kevin White, UChicago c18fb9d4084057f452c19fff16e1828b https://www.encodeproject.org/files/ENCFF249UOH/@@download/ENCFF249UOH.bigWig released s3://encode-public/2016/06/20/8b1b0b32-a72c-43b1-8c86-d99528f8dcc7/ENCFF249UOH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF875ZGO bam bam unfiltered alignments hg19 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO059AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002EXA/ 1212663982 ENCODE Processing Pipeline dfb8828a17bbf5938135fc37fca2fa65 https://www.encodeproject.org/files/ENCFF875ZGO/@@download/ENCFF875ZGO.bam released s3://encode-public/2018/02/21/209fa13c-651b-4b18-9510-4e74752a602a/ENCFF875ZGO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF888HMP bam bam unfiltered alignments hg19 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 2 2_1 36 /files/ENCFF002EXD/, /files/ENCFF807MUK/ 1036662617 ENCODE Processing Pipeline c28953e9b5a905baa5de72c6fb3f82ad https://www.encodeproject.org/files/ENCFF888HMP/@@download/ENCFF888HMP.bam released s3://encode-public/2018/02/21/6a1c36dd-9e5e-498e-96be-7eec14c332ad/ENCFF888HMP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF002EXA fastq fastq reads ENCSR221IDN Control ChIP-seq /human-donors/ENCDO059AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 1 1_1 36 single-ended 835692885 Michael Snyder, Stanford ef3c9703efee077ba1d81b2b395dcd44 SRA:SRR8660189 https://www.encodeproject.org/files/ENCFF002EXA/@@download/ENCFF002EXA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/30/8d23858c-cdce-491f-a2d9-38d29760c901/ENCFF002EXA.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF002EXD fastq fastq reads ENCSR221IDN Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 2 2_1 36 single-ended 723373582 Michael Snyder, Stanford bfcfc6361dc8d995da6edb5dceb2ee3c SRA:SRR8660190 https://www.encodeproject.org/files/ENCFF002EXD/@@download/ENCFF002EXD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/30/d7b9679a-b42d-4a3e-91ee-5871be58f118/ENCFF002EXD.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF498EIA bam bam alignments hg19 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO059AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002EXA/ 838254252 ENCODE Processing Pipeline 54e81187f460264ebcbd2edc363e2993 https://www.encodeproject.org/files/ENCFF498EIA/@@download/ENCFF498EIA.bam released s3://encode-public/2015/12/09/bca99207-5bcb-4ab9-87e5-de1b1599059d/ENCFF498EIA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF631FAS bam bam alignments hg19 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 2 2_1 36 /files/ENCFF002EXD/, /files/ENCFF807MUK/ 658914131 ENCODE Processing Pipeline 52847bcfcf139952e31cd1a7749bec0d https://www.encodeproject.org/files/ENCFF631FAS/@@download/ENCFF631FAS.bam released s3://encode-public/2015/12/09/e1179795-c760-43d1-9104-a6a75c3351f8/ENCFF631FAS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF493MYE bam bam unfiltered alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 2 2_1 36 /files/ENCFF002EXD/, /files/ENCFF643CGH/ 1042450943 ENCODE Processing Pipeline fb451ea8e6a0696846d99535c5190e62 https://www.encodeproject.org/files/ENCFF493MYE/@@download/ENCFF493MYE.bam released s3://encode-public/2016/05/06/b577dc4a-0ac8-4817-9dfe-7e4e0e8d3517/ENCFF493MYE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF745BIL bam bam unfiltered alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO059AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002EXA/ 1219079189 ENCODE Processing Pipeline 7ee054209fc60b8c46d3157684e9847d https://www.encodeproject.org/files/ENCFF745BIL/@@download/ENCFF745BIL.bam released s3://encode-public/2016/05/06/3516ba9a-427c-4111-a54b-4483c1bea93f/ENCFF745BIL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF410ZWA bam bam alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 2 2_1 36 /files/ENCFF002EXD/, /files/ENCFF643CGH/ 658544700 ENCODE Processing Pipeline 7750bc41b0fee6676f11193dc679b7f2 https://www.encodeproject.org/files/ENCFF410ZWA/@@download/ENCFF410ZWA.bam released s3://encode-public/2016/05/06/cddc26f9-463e-4f66-b979-ef3a5bbbaa2c/ENCFF410ZWA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF904IZI bam bam alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO059AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002EXA/ 837823701 ENCODE Processing Pipeline ac4ec1d6c86868db1da07114292f3d79 https://www.encodeproject.org/files/ENCFF904IZI/@@download/ENCFF904IZI.bam released s3://encode-public/2016/05/06/9ba3ee98-736a-41f4-9df5-532758ee064d/ENCFF904IZI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF248PNN bam bam unfiltered alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO059AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002EXA/ 1178773695 ENCODE Processing Pipeline f7e1d8cefee39ee1493be703969d3e2a https://www.encodeproject.org/files/ENCFF248PNN/@@download/ENCFF248PNN.bam released s3://encode-public/2020/06/13/9c5c8420-9809-4712-8629-3ba54cbc441e/ENCFF248PNN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF657XFC bam bam unfiltered alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 2 2_1 36 /files/ENCFF002EXD/, /files/ENCFF110MCL/ 1010705784 ENCODE Processing Pipeline 26c1f4546007dc1de70ade5c3a562815 https://www.encodeproject.org/files/ENCFF657XFC/@@download/ENCFF657XFC.bam released s3://encode-public/2020/06/13/8b31df06-ca23-4810-af7d-0858acabcce5/ENCFF657XFC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF671CFM bam bam alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO059AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002EXA/ 919707890 ENCODE Processing Pipeline 1c6b7e058da01df750eb83083b87932e https://www.encodeproject.org/files/ENCFF671CFM/@@download/ENCFF671CFM.bam released s3://encode-public/2020/06/13/6a54b48f-3650-4d19-8f74-ebeaddd520ce/ENCFF671CFM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF734VVM bam bam alignments GRCh38 ENCSR221IDN Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-02-02 ENCODE 150-350 2 2_1 36 /files/ENCFF002EXD/, /files/ENCFF110MCL/ 719680098 ENCODE Processing Pipeline 28a0eacfb1ab9daba8c890905800e153 https://www.encodeproject.org/files/ENCFF734VVM/@@download/ENCFF734VVM.bam released s3://encode-public/2020/06/13/90b17400-428d-44d1-aaab-e9c51cbc1f45/ENCFF734VVM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF630MJA bam bam unfiltered alignments GRCh38 ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF554RIX/, /files/ENCFF290VLP/ 1573441363 ENCODE Processing Pipeline 12c8de3ea6d64b8dc1c8f5de5fd82f7a https://www.encodeproject.org/files/ENCFF630MJA/@@download/ENCFF630MJA.bam released s3://encode-public/2020/10/08/c293c922-cd95-48e5-bdc9-a558f3a39cfa/ENCFF630MJA.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF554RIX fastq fastq reads ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 815344354 Zhiping Weng, UMass 5c86899431cbb156d9dddb8e918f4b9c SRA:SRR787530 https://www.encodeproject.org/files/ENCFF554RIX/@@download/ENCFF554RIX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/5d695f43-25e1-448d-a170-1c54e7688471/ENCFF554RIX.fastq.gz low read length ENCFF290VLP fastq fastq reads ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 465041342 Zhiping Weng, UMass 4f445955c69a8a373cf2fe77190de6ec SRA:SRR787531 https://www.encodeproject.org/files/ENCFF290VLP/@@download/ENCFF290VLP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/69846130-f77c-4863-85f9-9e80321a3b1c/ENCFF290VLP.fastq.gz low read length ENCFF078KYS bam bam unfiltered alignments GRCh38 ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF554RIX/, /files/ENCFF290VLP/, /files/ENCFF643CGH/ 1614719262 ENCODE Processing Pipeline 42422fa39ff264d3d11c86e8dedd18ad https://www.encodeproject.org/files/ENCFF078KYS/@@download/ENCFF078KYS.bam released s3://encode-public/2016/12/19/f77f7aad-8d5a-4b5e-adc5-0f7846b61a9f/ENCFF078KYS.bam ENCODE3 GRCh38 archived low read length ENCFF912YRP bam bam unfiltered alignments hg19 ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF554RIX/, /files/ENCFF290VLP/, /files/ENCFF807MUK/ 1606607376 ENCODE Processing Pipeline b937a1c2e05a944a70ab1d4eaaa4a368 https://www.encodeproject.org/files/ENCFF912YRP/@@download/ENCFF912YRP.bam released s3://encode-public/2016/12/19/b53bae8f-2ba3-44f6-9857-946ef43821e7/ENCFF912YRP.bam ENCODE3 hg19 archived low read length ENCFF904DBV bam bam alignments GRCh38 ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF554RIX/, /files/ENCFF290VLP/, /files/ENCFF643CGH/ 1182496791 ENCODE Processing Pipeline 5b9c334316e1cf76b4e715f08f9797e4 https://www.encodeproject.org/files/ENCFF904DBV/@@download/ENCFF904DBV.bam released s3://encode-public/2016/12/19/0e6fc570-f66c-4dc0-9d53-eb8ff61edb90/ENCFF904DBV.bam ENCODE3 GRCh38 archived low read length ENCFF113RIO bam bam alignments hg19 ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF554RIX/, /files/ENCFF290VLP/, /files/ENCFF807MUK/ 1182774476 ENCODE Processing Pipeline 24011021cd36e1ee8f18eda8e004f5c7 https://www.encodeproject.org/files/ENCFF113RIO/@@download/ENCFF113RIO.bam released s3://encode-public/2016/12/19/815de0e1-0b4f-494a-b371-8885814bbadf/ENCFF113RIO.bam ENCODE3 hg19 archived low read length ENCFF702ZGS tagAlign tagAlign alignments hg19 ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF290VLP/, /files/ENCFF554RIX/ 200285781 Anshul Kundaje, Stanford d122fc2a9f03685f6d4de5cbe8247506 https://www.encodeproject.org/files/ENCFF702ZGS/@@download/ENCFF702ZGS.tagAlign.gz archived s3://encode-public/2016/02/11/246664d8-1bb4-428c-a01d-93017f57a129/ENCFF702ZGS.tagAlign.gz Lab custom hg19 archived low read length ENCFF337KHD bam bam alignments GRCh38 ENCSR927MXE Control ChIP-seq /human-donors/ENCDO442NQP/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF554RIX/, /files/ENCFF290VLP/ 1282160808 ENCODE Processing Pipeline e5576e4682fe2a3474f1ee830d53c16c https://www.encodeproject.org/files/ENCFF337KHD/@@download/ENCFF337KHD.bam released s3://encode-public/2020/10/08/78aab9a0-d7d4-41d7-851a-1041dcd81408/ENCFF337KHD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF628IUI fastq fastq reads ENCSR075LYH Control ChIP-seq /fly-donors/ENCDO923IJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36024/'], '@type': ['Target', 'Item'], 'name': 'CG12744-dmelanogaster', 'label': 'CG12744', '@id': '/targets/CG12744-dmelanogaster/', 'title': 'CG12744 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7e38f946-eb56-41ca-b978-0c3e62cf7b55', 'status': 'released'} dm3 2R 5753605 5772885 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 600494868 Kevin White, UChicago 11f01e285a99358b1ae7efb4e1e3a102 https://www.encodeproject.org/files/ENCFF628IUI/@@download/ENCFF628IUI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/0c3bda80-88f3-4aa9-a4c2-b1a58e67b855/ENCFF628IUI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF920YJY bam bam alignments dm3 ENCSR075LYH Control ChIP-seq /fly-donors/ENCDO923IJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36024/'], '@type': ['Target', 'Item'], 'name': 'CG12744-dmelanogaster', 'label': 'CG12744', '@id': '/targets/CG12744-dmelanogaster/', 'title': 'CG12744 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7e38f946-eb56-41ca-b978-0c3e62cf7b55', 'status': 'released'} dm3 2R 5753605 5772885 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF628IUI/ 871175693 Kevin White, UChicago 04000772ba7c4e3ff0831a8d29ad7692 https://www.encodeproject.org/files/ENCFF920YJY/@@download/ENCFF920YJY.bam released s3://encode-public/2015/08/05/23db2c6f-bd78-4f10-9e97-74714672e065/ENCFF920YJY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF373EAB bigWig bigWig read-depth normalized signal dm3 ENCSR075LYH Control ChIP-seq /fly-donors/ENCDO923IJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36024/'], '@type': ['Target', 'Item'], 'name': 'CG12744-dmelanogaster', 'label': 'CG12744', '@id': '/targets/CG12744-dmelanogaster/', 'title': 'CG12744 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7e38f946-eb56-41ca-b978-0c3e62cf7b55', 'status': 'released'} dm3 2R 5753605 5772885 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF920YJY/ 15415769 Kevin White, UChicago 2190192b128294c5c801094b1c7b9007 https://www.encodeproject.org/files/ENCFF373EAB/@@download/ENCFF373EAB.bigWig released s3://encode-public/2015/10/07/d245a4bd-e524-4df9-a41d-d7a210682483/ENCFF373EAB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF373XCE bigWig bigWig signal of unique reads dm3 ENCSR075LYH Control ChIP-seq /fly-donors/ENCDO923IJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36024/'], '@type': ['Target', 'Item'], 'name': 'CG12744-dmelanogaster', 'label': 'CG12744', '@id': '/targets/CG12744-dmelanogaster/', 'title': 'CG12744 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7e38f946-eb56-41ca-b978-0c3e62cf7b55', 'status': 'released'} dm3 2R 5753605 5772885 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF920YJY/ 15373799 Kevin White, UChicago 9f6916ccce47e20685e71fa8269f2929 https://www.encodeproject.org/files/ENCFF373XCE/@@download/ENCFF373XCE.bigWig released s3://encode-public/2015/10/07/e2b6016b-11da-4e5d-be7a-d3b857786955/ENCFF373XCE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF843BQR bam bam alignments dm6 ENCSR075LYH Control ChIP-seq /fly-donors/ENCDO923IJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36024/'], '@type': ['Target', 'Item'], 'name': 'CG12744-dmelanogaster', 'label': 'CG12744', '@id': '/targets/CG12744-dmelanogaster/', 'title': 'CG12744 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7e38f946-eb56-41ca-b978-0c3e62cf7b55', 'status': 'released'} dm3 2R 5753605 5772885 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF628IUI/ 868593628 Kevin White, UChicago 1039bcee0a282482818e464494646bc9 https://www.encodeproject.org/files/ENCFF843BQR/@@download/ENCFF843BQR.bam released s3://encode-public/2016/04/20/15376620-3ab0-4eb8-a56e-a3d39f2d0aab/ENCFF843BQR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF514PPN bigWig bigWig read-depth normalized signal dm6 ENCSR075LYH Control ChIP-seq /fly-donors/ENCDO923IJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36024/'], '@type': ['Target', 'Item'], 'name': 'CG12744-dmelanogaster', 'label': 'CG12744', '@id': '/targets/CG12744-dmelanogaster/', 'title': 'CG12744 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7e38f946-eb56-41ca-b978-0c3e62cf7b55', 'status': 'released'} dm3 2R 5753605 5772885 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF843BQR/ 17529978 Kevin White, UChicago 3ee38399e5b1cd79c3b8016f6fc4c175 https://www.encodeproject.org/files/ENCFF514PPN/@@download/ENCFF514PPN.bigWig released s3://encode-public/2016/06/20/84045483-4d63-4cbc-afb4-beefbe14f5c6/ENCFF514PPN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF355DBX bigWig bigWig signal of unique reads dm6 ENCSR075LYH Control ChIP-seq /fly-donors/ENCDO923IJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36024/'], '@type': ['Target', 'Item'], 'name': 'CG12744-dmelanogaster', 'label': 'CG12744', '@id': '/targets/CG12744-dmelanogaster/', 'title': 'CG12744 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7e38f946-eb56-41ca-b978-0c3e62cf7b55', 'status': 'released'} dm3 2R 5753605 5772885 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF843BQR/ 17472785 Kevin White, UChicago a74ca40ad1bdeec1a3aa0fd8bcb7b9c0 https://www.encodeproject.org/files/ENCFF355DBX/@@download/ENCFF355DBX.bigWig released s3://encode-public/2016/06/20/d9827987-0f16-4cc6-b436-2e4b789d378d/ENCFF355DBX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001KOG bam bam alignments mm9 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KOQ/ 201665231 Bing Ren, UCSD 87754cafb857042daf127a47efa42a3e https://www.encodeproject.org/files/ENCFF001KOG/@@download/ENCFF001KOG.bam archived s3://encode-public/2011/12/23/f89a1c65-b5e0-4b76-8adf-c0186b4b22fb/ENCFF001KOG.bam Lab custom mm9 archived low read length insufficient read depth extremely low read depth ENCFF001KOI bam bam alignments mm9 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KOV/ 424009529 Bing Ren, UCSD 307c7ea1303bb7b43fcc055b00b441df https://www.encodeproject.org/files/ENCFF001KOI/@@download/ENCFF001KOI.bam archived s3://encode-public/2011/12/23/6e19c705-4417-4a8c-bef7-8a5b33e90eb0/ENCFF001KOI.bam Lab custom mm9 archived low read length insufficient read depth extremely low read depth ENCFF001KOK bigWig bigWig signal mm9 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KOG/, /files/ENCFF001KOI/ 62608065 Bing Ren, UCSD 1b28655df25cce5b85da2956e9aa5d42 https://www.encodeproject.org/files/ENCFF001KOK/@@download/ENCFF001KOK.bigWig archived s3://encode-public/2011/12/23/48e6c310-72d0-4fe1-a5ec-5476a1743a92/ENCFF001KOK.bigWig Lab custom mm9 archived low read length insufficient read depth extremely low read depth ENCFF001KOQ fastq fastq reads ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 single-ended 251270116 Bing Ren, UCSD 161ee16495966d1979ad7fd6fa033327 https://www.encodeproject.org/files/ENCFF001KOQ/@@download/ENCFF001KOQ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/d7384442-ba63-44b3-8bfc-e0ef96df4c8e/ENCFF001KOQ.fastq.gz low read length insufficient read depth extremely low read depth ENCFF001KOV fastq fastq reads ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 single-ended 830766634 Bing Ren, UCSD 2170eea01e7a6e5f4c27226a2ab219a5 https://www.encodeproject.org/files/ENCFF001KOV/@@download/ENCFF001KOV.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/be24dd70-701f-422a-9268-aec44af1f4b5/ENCFF001KOV.fastq.gz low read length insufficient read depth extremely low read depth ENCFF207RUK bam bam unfiltered alignments mm10-minimal ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KOV/, /files/ENCFF806TVZ/ 922202399 J. Michael Cherry, Stanford c978b6454e2e42d8dd942b324f6e9a80 https://www.encodeproject.org/files/ENCFF207RUK/@@download/ENCFF207RUK.bam archived s3://encode-public/2015/02/04/77359fd9-5a77-483b-a4a0-6d4b51c1d3ae/ENCFF207RUK.bam ENCODE3 mm10-minimal archived low read length insufficient read depth extremely low read depth ENCFF227VTU bam bam unfiltered alignments mm10-minimal ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KOQ/, /files/ENCFF806TVZ/ 287765546 J. Michael Cherry, Stanford c76ca87b6d1d87c50ba8b7050a053a92 https://www.encodeproject.org/files/ENCFF227VTU/@@download/ENCFF227VTU.bam archived s3://encode-public/2015/02/04/b1dbe180-0dd7-406a-b7fb-97c6bd0f2973/ENCFF227VTU.bam ENCODE3 mm10-minimal archived low read length insufficient read depth extremely low read depth ENCFF738EUE bam bam alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KOV/ 401102631 ENCODE Processing Pipeline e1a6ab7b831ac28b59410be9194fae79 https://www.encodeproject.org/files/ENCFF738EUE/@@download/ENCFF738EUE.bam released s3://encode-public/2016/04/28/d08172ab-fcf6-4bda-a768-0f47bc17d09d/ENCFF738EUE.bam ENCODE3 mm10 archived low read length insufficient read depth extremely low read depth ENCFF493MBH bam bam alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KOQ/ 151970389 ENCODE Processing Pipeline f96c679a16e441358d25ab34e52fd237 https://www.encodeproject.org/files/ENCFF493MBH/@@download/ENCFF493MBH.bam released s3://encode-public/2016/04/28/4c6374f7-1c43-482d-9b83-3b1bf96cda46/ENCFF493MBH.bam ENCODE3 mm10 archived low read length insufficient read depth extremely low read depth ENCFF745QLK bam bam unfiltered alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KOQ/ 288061259 ENCODE Processing Pipeline 365c97b5d6ecb63b6aa5609e7fc0729b https://www.encodeproject.org/files/ENCFF745QLK/@@download/ENCFF745QLK.bam released s3://encode-public/2016/07/06/e39d62f4-5c12-4418-b5af-30630b139053/ENCFF745QLK.bam ENCODE3 mm10 archived low read length insufficient read depth extremely low read depth ENCFF313PAJ bam bam unfiltered alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KOV/ 923501847 ENCODE Processing Pipeline 693749137672c45da1262ae505bfb6ce https://www.encodeproject.org/files/ENCFF313PAJ/@@download/ENCFF313PAJ.bam released s3://encode-public/2016/07/06/7ade8c71-a1d4-454b-bfc9-4a88b6f372e9/ENCFF313PAJ.bam ENCODE3 mm10 archived low read length insufficient read depth extremely low read depth ENCFF027LCN bam bam unfiltered alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KOQ/, /files/ENCFF309GLL/ 285373918 ENCODE Processing Pipeline ea5eba31607479eff0d9b660ac052a36 https://www.encodeproject.org/files/ENCFF027LCN/@@download/ENCFF027LCN.bam released s3://encode-public/2020/10/12/5bf062b6-2532-4b34-b3cf-4dd8eefdbd47/ENCFF027LCN.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth extremely low read depth ENCFF398LGT bam bam alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KOV/, /files/ENCFF309GLL/ 428504191 ENCODE Processing Pipeline e93f5738e8f94a1663321fa2b3c84b0c https://www.encodeproject.org/files/ENCFF398LGT/@@download/ENCFF398LGT.bam released s3://encode-public/2020/10/12/1b797e7e-a186-497a-ae31-32dad75fd112/ENCFF398LGT.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth extremely low read depth ENCFF432AUZ bam bam unfiltered alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KOV/, /files/ENCFF309GLL/ 909363823 ENCODE Processing Pipeline c1c41f1ce59e9cf5d495105cbe3ad7ca https://www.encodeproject.org/files/ENCFF432AUZ/@@download/ENCFF432AUZ.bam released s3://encode-public/2020/10/12/51f3f5a0-29be-47e7-9533-927edebfde03/ENCFF432AUZ.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth extremely low read depth ENCFF939ULB bam bam alignments mm10 ENCSR000CAY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KOQ/, /files/ENCFF309GLL/ 162627791 ENCODE Processing Pipeline e146754b70bb000fdb50959fcb89ef84 https://www.encodeproject.org/files/ENCFF939ULB/@@download/ENCFF939ULB.bam released s3://encode-public/2020/10/12/b1f11e95-2415-4c95-848c-3647a35ec4c8/ENCFF939ULB.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth extremely low read depth ENCFF609CWE tagAlign tagAlign alignments hg19 ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 /files/ENCFF219ZTD/, /files/ENCFF171PZA/, /files/ENCFF493KOY/ 236850554 Anshul Kundaje, Stanford f48c651a8057f62fa00cb57f4c71393a https://www.encodeproject.org/files/ENCFF609CWE/@@download/ENCFF609CWE.tagAlign.gz archived s3://encode-public/2016/03/30/f140ab0a-3796-4bf9-bbb8-6d026612d130/ENCFF609CWE.tagAlign.gz Lab custom hg19 archived low read length ENCFF219ZTD fastq fastq reads ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 552952891 Zhiping Weng, UMass c1d659c0e43f456c1644577de1f539c4 SRA:SRR1045844 https://www.encodeproject.org/files/ENCFF219ZTD/@@download/ENCFF219ZTD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/9dbe329d-aa81-4fe3-b4a9-d301ce28fdbc/ENCFF219ZTD.fastq.gz low read length ENCFF493KOY fastq fastq reads ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 550200064 Zhiping Weng, UMass eb391335e2b9b3def1c3d822de4b31b6 SRA:SRR1045843 https://www.encodeproject.org/files/ENCFF493KOY/@@download/ENCFF493KOY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/8139d96f-af9b-4294-8865-e95becbdeec6/ENCFF493KOY.fastq.gz low read length ENCFF171PZA fastq fastq reads ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 2003754341 Zhiping Weng, UMass b2ddc6d6be79d2630f96c7bde34220d6 SRA:SRR449625 https://www.encodeproject.org/files/ENCFF171PZA/@@download/ENCFF171PZA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/b058c4a3-50cb-4ad8-b49a-78dd4cf404ad/ENCFF171PZA.fastq.gz low read length ENCFF737ZCN bam bam unfiltered alignments GRCh38 ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF493KOY/, /files/ENCFF219ZTD/, /files/ENCFF643CGH/, /files/ENCFF171PZA/ 3832416433 ENCODE Processing Pipeline 5c64a848d744cc31c32399fae66f64ed https://www.encodeproject.org/files/ENCFF737ZCN/@@download/ENCFF737ZCN.bam released s3://encode-public/2016/12/19/6a085d22-aae1-4524-bda9-45c1f7fdbe5b/ENCFF737ZCN.bam ENCODE3 GRCh38 archived low read length ENCFF562IBE bam bam unfiltered alignments hg19 ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF493KOY/, /files/ENCFF219ZTD/, /files/ENCFF807MUK/, /files/ENCFF171PZA/ 3811032559 ENCODE Processing Pipeline f4aafb822d689b33a59f8896a4cf238a https://www.encodeproject.org/files/ENCFF562IBE/@@download/ENCFF562IBE.bam released s3://encode-public/2016/12/19/ed53e406-0ebc-4792-af44-aa9b33e8943f/ENCFF562IBE.bam ENCODE3 hg19 archived low read length ENCFF745UCV bam bam alignments hg19 ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF493KOY/, /files/ENCFF219ZTD/, /files/ENCFF807MUK/, /files/ENCFF171PZA/ 2453309837 ENCODE Processing Pipeline 40275384eb938a594031cdd61bcfd7ed https://www.encodeproject.org/files/ENCFF745UCV/@@download/ENCFF745UCV.bam released s3://encode-public/2016/12/19/1d67fb44-4aad-44cc-8659-62204f900f9a/ENCFF745UCV.bam ENCODE3 hg19 archived low read length ENCFF127SFN bam bam alignments GRCh38 ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF493KOY/, /files/ENCFF219ZTD/, /files/ENCFF643CGH/, /files/ENCFF171PZA/ 2452836189 ENCODE Processing Pipeline eb36bd06bb2dca10a877d41a450913a0 https://www.encodeproject.org/files/ENCFF127SFN/@@download/ENCFF127SFN.bam released s3://encode-public/2016/12/19/27b4848c-8755-4b4e-866e-c5710d29217f/ENCFF127SFN.bam ENCODE3 GRCh38 archived low read length ENCFF147UBO bam bam alignments GRCh38 ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF171PZA/, /files/ENCFF110MCL/, /files/ENCFF219ZTD/, /files/ENCFF493KOY/ 2635266361 ENCODE Processing Pipeline 0fa9b08f8ab7b66cba691572f69efcc9 https://www.encodeproject.org/files/ENCFF147UBO/@@download/ENCFF147UBO.bam released s3://encode-public/2020/10/09/576e0efd-936b-44bc-a5d8-e444f0c1ef76/ENCFF147UBO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF015ATX bam bam unfiltered alignments GRCh38 ENCSR688CIB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF171PZA/, /files/ENCFF110MCL/, /files/ENCFF219ZTD/, /files/ENCFF493KOY/ 3716383818 ENCODE Processing Pipeline 43e43a5a87d7491ced6728f3c347db1a https://www.encodeproject.org/files/ENCFF015ATX/@@download/ENCFF015ATX.bam released s3://encode-public/2020/10/09/beed92ec-14ec-455c-9b98-af0b3b2ad253/ENCFF015ATX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF745POQ fastq fastq reads ENCSR603RRK Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2018-02-15 modERN sonication (Bioruptor generic) 175-250 1 1_1 50 single-ended 1036061270 Kevin White, UChicago d6d9d29ea6eb35a3f924a956f1c0ffa3 https://www.encodeproject.org/files/ENCFF745POQ/@@download/ENCFF745POQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/787f8ac4-c585-41b0-a869-5fb2f56352e1/ENCFF745POQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF194GSF bam bam alignments dm6 ENCSR603RRK Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2018-02-15 modERN sonication (Bioruptor generic) 175-250 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF745POQ/ 1425574976 Kevin White, UChicago 01b911606b5f72a8ed3a68e4eb128593 https://www.encodeproject.org/files/ENCFF194GSF/@@download/ENCFF194GSF.bam released s3://encode-public/2017/09/20/42b5e75f-b8d3-4111-9715-d745e12fd33a/ENCFF194GSF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF949NRW bigWig bigWig signal of unique reads dm3 ENCSR603RRK Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2018-02-15 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF079JWJ/ 15395838 Kevin White, UChicago a4277e1c2435e73d83d3e6a2ad87ff69 https://www.encodeproject.org/files/ENCFF949NRW/@@download/ENCFF949NRW.bigWig released s3://encode-public/2017/09/20/94511f77-468c-43b7-99ee-f093e6e0c4fa/ENCFF949NRW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF472EZK bigWig bigWig read-depth normalized signal dm3 ENCSR603RRK Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2018-02-15 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF079JWJ/ 15393267 Kevin White, UChicago 593182f3e36f2ebb5f4154b6180f3aee https://www.encodeproject.org/files/ENCFF472EZK/@@download/ENCFF472EZK.bigWig released s3://encode-public/2017/09/20/f3f1133e-e4f4-4595-aaa6-a8820c1509ee/ENCFF472EZK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF079JWJ bam bam alignments dm3 ENCSR603RRK Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2018-02-15 modERN sonication (Bioruptor generic) 175-250 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF745POQ/ 1431599273 Kevin White, UChicago ca1d765e308b3c6f96abf11bd1ba9818 https://www.encodeproject.org/files/ENCFF079JWJ/@@download/ENCFF079JWJ.bam released s3://encode-public/2017/09/20/7c7261cc-8773-4e55-b613-23900090849a/ENCFF079JWJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF314CHB bigWig bigWig signal of unique reads dm6 ENCSR603RRK Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2018-02-15 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF194GSF/ 17599018 Kevin White, UChicago dc9d01142ef4930d8d56cca84a23d322 https://www.encodeproject.org/files/ENCFF314CHB/@@download/ENCFF314CHB.bigWig released s3://encode-public/2017/09/21/6ccc9b03-e504-45a8-ab6e-55155e7aee93/ENCFF314CHB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF624SXD bigWig bigWig read-depth normalized signal dm6 ENCSR603RRK Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2018-02-15 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF194GSF/ 17610807 Kevin White, UChicago bba0efe92483b4c4db815595dcd531d3 https://www.encodeproject.org/files/ENCFF624SXD/@@download/ENCFF624SXD.bigWig released s3://encode-public/2017/09/21/c0f116e7-e449-4531-b05d-58f8b8928428/ENCFF624SXD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF573GQQ fastq fastq reads ENCSR506OGY Control ChIP-seq /fly-donors/ENCDO262IIR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53579/'], '@type': ['Target', 'Item'], 'name': 'Dip3-dmelanogaster', 'label': 'Dip3', '@id': '/targets/Dip3-dmelanogaster/', 'title': 'Dip3 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '465c2f90-8026-4631-84ec-9f0f536dd3d5', 'status': 'released'} dm3 2R 13972267 14060990 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 611731225 Kevin White, UChicago 258d2f4fb0baa06b360c5a72f6745f85 https://www.encodeproject.org/files/ENCFF573GQQ/@@download/ENCFF573GQQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/c01404bb-f9aa-447c-9e5d-613d6b14fd4d/ENCFF573GQQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF238KVC bam bam alignments dm3 ENCSR506OGY Control ChIP-seq /fly-donors/ENCDO262IIR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53579/'], '@type': ['Target', 'Item'], 'name': 'Dip3-dmelanogaster', 'label': 'Dip3', '@id': '/targets/Dip3-dmelanogaster/', 'title': 'Dip3 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '465c2f90-8026-4631-84ec-9f0f536dd3d5', 'status': 'released'} dm3 2R 13972267 14060990 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF573GQQ/ 884377956 Kevin White, UChicago 29c296a6959c6d46f7d7c529214be489 https://www.encodeproject.org/files/ENCFF238KVC/@@download/ENCFF238KVC.bam released s3://encode-public/2015/08/03/641a5fcb-a48e-4557-9e8b-af1e11487182/ENCFF238KVC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF403BAU bigWig bigWig read-depth normalized signal dm3 ENCSR506OGY Control ChIP-seq /fly-donors/ENCDO262IIR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53579/'], '@type': ['Target', 'Item'], 'name': 'Dip3-dmelanogaster', 'label': 'Dip3', '@id': '/targets/Dip3-dmelanogaster/', 'title': 'Dip3 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '465c2f90-8026-4631-84ec-9f0f536dd3d5', 'status': 'released'} dm3 2R 13972267 14060990 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF238KVC/ 15271814 Kevin White, UChicago 7727df5b15773b064acfd53455c02e77 https://www.encodeproject.org/files/ENCFF403BAU/@@download/ENCFF403BAU.bigWig released s3://encode-public/2015/10/05/de237e0d-ff54-4f40-acc5-590807c886ac/ENCFF403BAU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF096GTW bigWig bigWig signal of unique reads dm3 ENCSR506OGY Control ChIP-seq /fly-donors/ENCDO262IIR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53579/'], '@type': ['Target', 'Item'], 'name': 'Dip3-dmelanogaster', 'label': 'Dip3', '@id': '/targets/Dip3-dmelanogaster/', 'title': 'Dip3 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '465c2f90-8026-4631-84ec-9f0f536dd3d5', 'status': 'released'} dm3 2R 13972267 14060990 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF238KVC/ 15256723 Kevin White, UChicago d2c4a1d047880375e61f982500250a5b https://www.encodeproject.org/files/ENCFF096GTW/@@download/ENCFF096GTW.bigWig released s3://encode-public/2015/10/05/ca74a444-2cd8-41ff-9953-1a5f4b80ea2c/ENCFF096GTW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF157JKO bam bam alignments dm6 ENCSR506OGY Control ChIP-seq /fly-donors/ENCDO262IIR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53579/'], '@type': ['Target', 'Item'], 'name': 'Dip3-dmelanogaster', 'label': 'Dip3', '@id': '/targets/Dip3-dmelanogaster/', 'title': 'Dip3 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '465c2f90-8026-4631-84ec-9f0f536dd3d5', 'status': 'released'} dm3 2R 13972267 14060990 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF573GQQ/ 880154446 Kevin White, UChicago 79bda9b1b829efa5e9edaf65c8acf353 https://www.encodeproject.org/files/ENCFF157JKO/@@download/ENCFF157JKO.bam released s3://encode-public/2016/04/21/f6b7d487-bfd8-4de9-9ef5-27773f4a8563/ENCFF157JKO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF049CCP bigWig bigWig signal of unique reads dm6 ENCSR506OGY Control ChIP-seq /fly-donors/ENCDO262IIR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53579/'], '@type': ['Target', 'Item'], 'name': 'Dip3-dmelanogaster', 'label': 'Dip3', '@id': '/targets/Dip3-dmelanogaster/', 'title': 'Dip3 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '465c2f90-8026-4631-84ec-9f0f536dd3d5', 'status': 'released'} dm3 2R 13972267 14060990 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF157JKO/ 17370373 Kevin White, UChicago 96393a38a7f68005de5776665b188d98 https://www.encodeproject.org/files/ENCFF049CCP/@@download/ENCFF049CCP.bigWig released s3://encode-public/2016/06/21/9858c78c-2714-4f87-98d5-bddd57a78ecc/ENCFF049CCP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF600JFF bigWig bigWig read-depth normalized signal dm6 ENCSR506OGY Control ChIP-seq /fly-donors/ENCDO262IIR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53579/'], '@type': ['Target', 'Item'], 'name': 'Dip3-dmelanogaster', 'label': 'Dip3', '@id': '/targets/Dip3-dmelanogaster/', 'title': 'Dip3 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '465c2f90-8026-4631-84ec-9f0f536dd3d5', 'status': 'released'} dm3 2R 13972267 14060990 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF157JKO/ 17388239 Kevin White, UChicago 1090510a960b39b48df1dece6529a324 https://www.encodeproject.org/files/ENCFF600JFF/@@download/ENCFF600JFF.bigWig released s3://encode-public/2016/06/21/1d0b5b80-c026-4ac0-9188-c4519219d5ef/ENCFF600JFF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF743MZL fastq fastq reads ENCSR100ITO Control ChIP-seq /fly-donors/ENCDO049UYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37027/'], '@type': ['Target', 'Item'], 'name': 'HLH54F-dmelanogaster', 'label': 'HLH54F', '@id': '/targets/HLH54F-dmelanogaster/', 'title': 'HLH54F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc7def32-3536-4e9d-9b57-966fe5372677', 'status': 'released'} dm3 2R 13628116 13651120 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 420341518 Kevin White, UChicago 8011118c330ec0b75b006ff993dd0e31 https://www.encodeproject.org/files/ENCFF743MZL/@@download/ENCFF743MZL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/4c0b31a7-7dd7-4e60-b67a-43df4424df63/ENCFF743MZL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF288TBW bam bam alignments dm3 ENCSR100ITO Control ChIP-seq /fly-donors/ENCDO049UYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37027/'], '@type': ['Target', 'Item'], 'name': 'HLH54F-dmelanogaster', 'label': 'HLH54F', '@id': '/targets/HLH54F-dmelanogaster/', 'title': 'HLH54F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc7def32-3536-4e9d-9b57-966fe5372677', 'status': 'released'} dm3 2R 13628116 13651120 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF743MZL/ 626631850 Kevin White, UChicago 4156e561e3c09a534b8f68e7324b23c3 https://www.encodeproject.org/files/ENCFF288TBW/@@download/ENCFF288TBW.bam released s3://encode-public/2015/08/05/5373f31b-dfe3-419e-841b-ca3fd31f818f/ENCFF288TBW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF810DRH bigWig bigWig read-depth normalized signal dm3 ENCSR100ITO Control ChIP-seq /fly-donors/ENCDO049UYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37027/'], '@type': ['Target', 'Item'], 'name': 'HLH54F-dmelanogaster', 'label': 'HLH54F', '@id': '/targets/HLH54F-dmelanogaster/', 'title': 'HLH54F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc7def32-3536-4e9d-9b57-966fe5372677', 'status': 'released'} dm3 2R 13628116 13651120 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF288TBW/ 15335136 Kevin White, UChicago 24c36c0597d0f8b8c6b5c3ffa525e68f https://www.encodeproject.org/files/ENCFF810DRH/@@download/ENCFF810DRH.bigWig released s3://encode-public/2015/10/05/f0caee5d-abb1-4ef1-ba8a-75efac733f35/ENCFF810DRH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF655TXM bigWig bigWig signal of unique reads dm3 ENCSR100ITO Control ChIP-seq /fly-donors/ENCDO049UYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37027/'], '@type': ['Target', 'Item'], 'name': 'HLH54F-dmelanogaster', 'label': 'HLH54F', '@id': '/targets/HLH54F-dmelanogaster/', 'title': 'HLH54F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc7def32-3536-4e9d-9b57-966fe5372677', 'status': 'released'} dm3 2R 13628116 13651120 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF288TBW/ 15329088 Kevin White, UChicago 262ae47169143d9dfc563165099dcf53 https://www.encodeproject.org/files/ENCFF655TXM/@@download/ENCFF655TXM.bigWig released s3://encode-public/2015/10/05/cf1a76c5-b2ab-42f1-9695-3fd7d04b30c3/ENCFF655TXM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF321JMV bam bam alignments dm6 ENCSR100ITO Control ChIP-seq /fly-donors/ENCDO049UYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37027/'], '@type': ['Target', 'Item'], 'name': 'HLH54F-dmelanogaster', 'label': 'HLH54F', '@id': '/targets/HLH54F-dmelanogaster/', 'title': 'HLH54F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc7def32-3536-4e9d-9b57-966fe5372677', 'status': 'released'} dm3 2R 13628116 13651120 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF743MZL/ 624419496 Kevin White, UChicago 6a8cd07f7a22a36583b3074ec33599cc https://www.encodeproject.org/files/ENCFF321JMV/@@download/ENCFF321JMV.bam released s3://encode-public/2016/04/21/5abe259d-ae58-400d-8f6a-a43beb4ad561/ENCFF321JMV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF372ZAN bigWig bigWig read-depth normalized signal dm6 ENCSR100ITO Control ChIP-seq /fly-donors/ENCDO049UYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37027/'], '@type': ['Target', 'Item'], 'name': 'HLH54F-dmelanogaster', 'label': 'HLH54F', '@id': '/targets/HLH54F-dmelanogaster/', 'title': 'HLH54F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc7def32-3536-4e9d-9b57-966fe5372677', 'status': 'released'} dm3 2R 13628116 13651120 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF321JMV/ 17447099 Kevin White, UChicago b02a7419c9e26127da196005b0b72757 https://www.encodeproject.org/files/ENCFF372ZAN/@@download/ENCFF372ZAN.bigWig released s3://encode-public/2016/06/21/1b495c89-e3cf-465a-8788-19b3ed217dbd/ENCFF372ZAN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF126DKT bigWig bigWig signal of unique reads dm6 ENCSR100ITO Control ChIP-seq /fly-donors/ENCDO049UYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37027/'], '@type': ['Target', 'Item'], 'name': 'HLH54F-dmelanogaster', 'label': 'HLH54F', '@id': '/targets/HLH54F-dmelanogaster/', 'title': 'HLH54F (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc7def32-3536-4e9d-9b57-966fe5372677', 'status': 'released'} dm3 2R 13628116 13651120 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF321JMV/ 17454327 Kevin White, UChicago 20db7d04f8d5df558461d69f17d0cef2 https://www.encodeproject.org/files/ENCFF126DKT/@@download/ENCFF126DKT.bigWig released s3://encode-public/2016/06/21/93a0e892-8328-4a75-899e-477ac3cc44c0/ENCFF126DKT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF405BXW fastq fastq reads ENCSR515BLI Control ChIP-seq /fly-donors/ENCDO404JGS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34413/'], '@type': ['Target', 'Item'], 'name': 'da-dmelanogaster', 'label': 'da', '@id': '/targets/da-dmelanogaster/', 'title': 'da (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '160cb1da-6e54-43f9-91b6-f03ca8fbb1cc', 'status': 'released'} dm3 2L 10363390 10419890 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 480365699 Kevin White, UChicago ff776a15e93227f46abf6cd55651dca1 https://www.encodeproject.org/files/ENCFF405BXW/@@download/ENCFF405BXW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/fd4ab175-8bf1-4faf-b304-eb57adfb8aab/ENCFF405BXW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF755BUZ bam bam alignments dm3 ENCSR515BLI Control ChIP-seq /fly-donors/ENCDO404JGS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34413/'], '@type': ['Target', 'Item'], 'name': 'da-dmelanogaster', 'label': 'da', '@id': '/targets/da-dmelanogaster/', 'title': 'da (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '160cb1da-6e54-43f9-91b6-f03ca8fbb1cc', 'status': 'released'} dm3 2L 10363390 10419890 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF405BXW/ 708990030 Kevin White, UChicago 3ac312e43f7d63a03428a56224391026 https://www.encodeproject.org/files/ENCFF755BUZ/@@download/ENCFF755BUZ.bam released s3://encode-public/2015/08/05/8cad25b3-2a5c-4b5e-ad8d-e59f8755bfa4/ENCFF755BUZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF854BMF bigWig bigWig read-depth normalized signal dm3 ENCSR515BLI Control ChIP-seq /fly-donors/ENCDO404JGS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34413/'], '@type': ['Target', 'Item'], 'name': 'da-dmelanogaster', 'label': 'da', '@id': '/targets/da-dmelanogaster/', 'title': 'da (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '160cb1da-6e54-43f9-91b6-f03ca8fbb1cc', 'status': 'released'} dm3 2L 10363390 10419890 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF755BUZ/ 15386435 Kevin White, UChicago 3f100aa8402a4ca98ddc1d021bc594b7 https://www.encodeproject.org/files/ENCFF854BMF/@@download/ENCFF854BMF.bigWig released s3://encode-public/2015/10/07/e864172d-3058-4d3b-be85-56f3b399027a/ENCFF854BMF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF784PPT bigWig bigWig signal of unique reads dm3 ENCSR515BLI Control ChIP-seq /fly-donors/ENCDO404JGS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34413/'], '@type': ['Target', 'Item'], 'name': 'da-dmelanogaster', 'label': 'da', '@id': '/targets/da-dmelanogaster/', 'title': 'da (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '160cb1da-6e54-43f9-91b6-f03ca8fbb1cc', 'status': 'released'} dm3 2L 10363390 10419890 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF755BUZ/ 15343691 Kevin White, UChicago 0ab25a9219246175056cdd9b3bb91f30 https://www.encodeproject.org/files/ENCFF784PPT/@@download/ENCFF784PPT.bigWig released s3://encode-public/2015/10/07/8b0c7839-9430-4e7a-9cb2-aa3025f6b98c/ENCFF784PPT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF066QKE bam bam alignments dm6 ENCSR515BLI Control ChIP-seq /fly-donors/ENCDO404JGS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34413/'], '@type': ['Target', 'Item'], 'name': 'da-dmelanogaster', 'label': 'da', '@id': '/targets/da-dmelanogaster/', 'title': 'da (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '160cb1da-6e54-43f9-91b6-f03ca8fbb1cc', 'status': 'released'} dm3 2L 10363390 10419890 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF405BXW/ 707033586 Kevin White, UChicago b7816dbe69d513535bb2a09419ac7705 https://www.encodeproject.org/files/ENCFF066QKE/@@download/ENCFF066QKE.bam released s3://encode-public/2016/04/20/2ce7a4e2-ce4d-4c56-96f9-d43d692fee29/ENCFF066QKE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF113HVF bigWig bigWig read-depth normalized signal dm6 ENCSR515BLI Control ChIP-seq /fly-donors/ENCDO404JGS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34413/'], '@type': ['Target', 'Item'], 'name': 'da-dmelanogaster', 'label': 'da', '@id': '/targets/da-dmelanogaster/', 'title': 'da (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '160cb1da-6e54-43f9-91b6-f03ca8fbb1cc', 'status': 'released'} dm3 2L 10363390 10419890 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF066QKE/ 17530093 Kevin White, UChicago 7349eaeccc9a8b844e7d984dc1905728 https://www.encodeproject.org/files/ENCFF113HVF/@@download/ENCFF113HVF.bigWig released s3://encode-public/2016/06/20/5e1edf31-1577-44e6-835a-b982aac302fb/ENCFF113HVF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF279TFB bigWig bigWig signal of unique reads dm6 ENCSR515BLI Control ChIP-seq /fly-donors/ENCDO404JGS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34413/'], '@type': ['Target', 'Item'], 'name': 'da-dmelanogaster', 'label': 'da', '@id': '/targets/da-dmelanogaster/', 'title': 'da (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '160cb1da-6e54-43f9-91b6-f03ca8fbb1cc', 'status': 'released'} dm3 2L 10363390 10419890 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF066QKE/ 17470989 Kevin White, UChicago cfaa7c7796cfc410775be0fe103e790a https://www.encodeproject.org/files/ENCFF279TFB/@@download/ENCFF279TFB.bigWig released s3://encode-public/2016/06/20/d8705930-d417-4380-912e-d13faeb29d0c/ENCFF279TFB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000XSR bam bam alignments hg19 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XSV/ 69876821 Sherman Weissman, Yale 064405fb71e6e272290970cc7228ffe3 https://www.encodeproject.org/files/ENCFF000XSR/@@download/ENCFF000XSR.bam archived s3://encode-public/2010/12/02/09fc5bea-e39c-45d1-a166-2079a0834498/ENCFF000XSR.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000XSS bam bam alignments hg19 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000XSY/ 146666635 Sherman Weissman, Yale d8866d1b52541f674646104e466fad8a https://www.encodeproject.org/files/ENCFF000XSS/@@download/ENCFF000XSS.bam archived s3://encode-public/2010/12/02/278c2014-94c7-4631-9954-7bded0d8c314/ENCFF000XSS.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000XST bigWig bigWig signal hg19 ENCSR000EZR Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 300006903 Sherman Weissman, Yale a9c5d318fb6b54f82926821eaea3d69a https://www.encodeproject.org/files/ENCFF000XST/@@download/ENCFF000XST.bigWig archived s3://encode-public/2010/12/02/99e05683-981a-4c6d-9c01-2fa33b52f352/ENCFF000XST.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000XSU bam bam alignments hg19 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 3 3_1 27 /files/ENCFF000XTB/ 188162734 Sherman Weissman, Yale 50dd56af7bf0f4197c1eb16d38c2cbc7 https://www.encodeproject.org/files/ENCFF000XSU/@@download/ENCFF000XSU.bam archived s3://encode-public/2010/12/02/44c055a5-b139-4ece-a589-435143738133/ENCFF000XSU.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000XSV fastq fastq reads ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 single-ended 51960058 Sherman Weissman, Yale 76acb840e4859c581e37ee3025b3c1f0 https://www.encodeproject.org/files/ENCFF000XSV/@@download/ENCFF000XSV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/a6709362-5426-4f59-a040-f9c3dbda8841/ENCFF000XSV.fastq.gz insufficient read length extremely low read depth ENCFF000XSY fastq fastq reads ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 single-ended 111438755 Sherman Weissman, Yale 2abd7c03e31be38acb757ecb8ed34a3f https://www.encodeproject.org/files/ENCFF000XSY/@@download/ENCFF000XSY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/307e5a6a-73a5-4b2b-b459-db8fc638b979/ENCFF000XSY.fastq.gz insufficient read length extremely low read depth ENCFF000XTB fastq fastq reads ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 3 3_1 27 single-ended 142475407 Sherman Weissman, Yale 3f7311f2af21a8a0f910f2e7f7b12954 https://www.encodeproject.org/files/ENCFF000XTB/@@download/ENCFF000XTB.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/73f17127-ec07-4c06-af42-e0e45fffd270/ENCFF000XTB.fastq.gz insufficient read length extremely low read depth ENCFF806LCL bam bam unfiltered alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 3 3_1 27 /files/ENCFF000XTB/, /files/ENCFF643CGH/ 189099869 ENCODE Processing Pipeline cd5f41c1ec8cbbbb88a1075673cdaf49 https://www.encodeproject.org/files/ENCFF806LCL/@@download/ENCFF806LCL.bam released s3://encode-public/2016/10/26/f09d1550-e54c-49b8-b60c-d4765d5224bc/ENCFF806LCL.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF431OJT bam bam unfiltered alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000XSY/ 147338414 ENCODE Processing Pipeline 3aae739d45bc79ff79c38f5c14fe1ef6 https://www.encodeproject.org/files/ENCFF431OJT/@@download/ENCFF431OJT.bam released s3://encode-public/2016/10/26/4f462803-1d97-4158-a5bc-880585fbba58/ENCFF431OJT.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF928XJB bam bam unfiltered alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XSV/, /files/ENCFF643CGH/ 70118255 ENCODE Processing Pipeline a4de3bf863b018385dfe75fea3159a8e https://www.encodeproject.org/files/ENCFF928XJB/@@download/ENCFF928XJB.bam released s3://encode-public/2016/10/26/9b91780d-8c14-4579-b5f7-447824f9ff7b/ENCFF928XJB.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF923FIF bam bam alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 3 3_1 27 /files/ENCFF000XTB/, /files/ENCFF643CGH/ 121469838 ENCODE Processing Pipeline 00cdf1fd1ecd798c225ffc0eb1634e58 https://www.encodeproject.org/files/ENCFF923FIF/@@download/ENCFF923FIF.bam released s3://encode-public/2016/10/26/a256be86-c694-41d1-abda-b423461bf951/ENCFF923FIF.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF455IYM bam bam alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XSV/, /files/ENCFF643CGH/ 35697683 ENCODE Processing Pipeline 3d8cc13cdf1e51a7a256c8fe28d99e6b https://www.encodeproject.org/files/ENCFF455IYM/@@download/ENCFF455IYM.bam released s3://encode-public/2016/10/26/6833699a-7438-4d13-b5d4-a8e65331e27f/ENCFF455IYM.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF232BBB bam bam alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000XSY/ 86504444 ENCODE Processing Pipeline 473ad6098287aa9cf88c6fa6a63c90cd https://www.encodeproject.org/files/ENCFF232BBB/@@download/ENCFF232BBB.bam released s3://encode-public/2016/10/26/b167e850-15d3-449f-baeb-1ac97ee149e9/ENCFF232BBB.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF659GSO bam bam unfiltered alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000XSV/ 65287382 ENCODE Processing Pipeline 76859013a983f2c35d8cdc13ba9c6488 https://www.encodeproject.org/files/ENCFF659GSO/@@download/ENCFF659GSO.bam released s3://encode-public/2020/10/27/89ca157e-070b-4c26-a378-015c58d7d62d/ENCFF659GSO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF790HSF bam bam unfiltered alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF110MCL/, /files/ENCFF000XSY/ 137693378 ENCODE Processing Pipeline c62f8c2e7eec66c91c792298a3e5a959 https://www.encodeproject.org/files/ENCFF790HSF/@@download/ENCFF790HSF.bam released s3://encode-public/2020/10/27/4164a419-f60d-46eb-a35e-4a980627acee/ENCFF790HSF.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF026VOZ bam bam unfiltered alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 3 3_1 27 /files/ENCFF110MCL/, /files/ENCFF000XTB/ 177884552 ENCODE Processing Pipeline 97e58eee08d20a55dded485c42ebcf40 https://www.encodeproject.org/files/ENCFF026VOZ/@@download/ENCFF026VOZ.bam released s3://encode-public/2020/10/27/344c50ff-8ca8-4bc3-b7d1-0b97fecf69eb/ENCFF026VOZ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF674YWR bam bam alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000XSV/ 30221741 ENCODE Processing Pipeline d88d6e2c318b142cf7beeb2444be0720 https://www.encodeproject.org/files/ENCFF674YWR/@@download/ENCFF674YWR.bam released s3://encode-public/2020/10/27/6dc3b8a1-9f39-4813-a8df-e813f15d13ce/ENCFF674YWR.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF299PVS bam bam alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 3 3_1 27 /files/ENCFF110MCL/, /files/ENCFF000XTB/ 119883498 ENCODE Processing Pipeline a9aa8abb63cb233c22e8770a99578a9d https://www.encodeproject.org/files/ENCFF299PVS/@@download/ENCFF299PVS.bam released s3://encode-public/2020/10/27/3f9438de-6838-491b-972e-96cc6be13429/ENCFF299PVS.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF817QOO bam bam alignments GRCh38 ENCSR000EZR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF110MCL/, /files/ENCFF000XSY/ 78812440 ENCODE Processing Pipeline e1d28aba1acf7010264878cef5e05558 https://www.encodeproject.org/files/ENCFF817QOO/@@download/ENCFF817QOO.bam released s3://encode-public/2020/10/27/cb0b6f1f-b256-4379-87af-be13a88a8671/ENCFF817QOO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF146CNW fastq fastq reads ENCSR247VJD Control ChIP-seq /fly-donors/ENCDO723MNZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42664/'], '@type': ['Target', 'Item'], 'name': 'btn-dmelanogaster', 'label': 'btn', '@id': '/targets/btn-dmelanogaster/', 'title': 'btn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5985e578-e238-4ef0-a2bf-ad17a4cf5702', 'status': 'released'} dm3 3R 18401274 18421442 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 786399979 Kevin White, UChicago 6ba7dab1961cf87670054108b91879ef https://www.encodeproject.org/files/ENCFF146CNW/@@download/ENCFF146CNW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/7b713641-3137-47a1-a264-c6ed05326b22/ENCFF146CNW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF687OWT bam bam alignments dm3 ENCSR247VJD Control ChIP-seq /fly-donors/ENCDO723MNZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42664/'], '@type': ['Target', 'Item'], 'name': 'btn-dmelanogaster', 'label': 'btn', '@id': '/targets/btn-dmelanogaster/', 'title': 'btn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5985e578-e238-4ef0-a2bf-ad17a4cf5702', 'status': 'released'} dm3 3R 18401274 18421442 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF146CNW/ 1169860858 Kevin White, UChicago d086a6860d69b71963517409cad02b60 https://www.encodeproject.org/files/ENCFF687OWT/@@download/ENCFF687OWT.bam released s3://encode-public/2015/08/03/e1c5289b-bb56-4d42-8e8d-c4c92a8a048f/ENCFF687OWT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF922ZAK bigWig bigWig read-depth normalized signal dm3 ENCSR247VJD Control ChIP-seq /fly-donors/ENCDO723MNZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42664/'], '@type': ['Target', 'Item'], 'name': 'btn-dmelanogaster', 'label': 'btn', '@id': '/targets/btn-dmelanogaster/', 'title': 'btn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5985e578-e238-4ef0-a2bf-ad17a4cf5702', 'status': 'released'} dm3 3R 18401274 18421442 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF687OWT/ 15454069 Kevin White, UChicago 089fb36c2e4c764129b835e3e14bb8f3 https://www.encodeproject.org/files/ENCFF922ZAK/@@download/ENCFF922ZAK.bigWig released s3://encode-public/2015/10/06/e9826bbb-d680-40fd-9a70-e732a9585779/ENCFF922ZAK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF158IBS bigWig bigWig signal of unique reads dm3 ENCSR247VJD Control ChIP-seq /fly-donors/ENCDO723MNZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42664/'], '@type': ['Target', 'Item'], 'name': 'btn-dmelanogaster', 'label': 'btn', '@id': '/targets/btn-dmelanogaster/', 'title': 'btn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5985e578-e238-4ef0-a2bf-ad17a4cf5702', 'status': 'released'} dm3 3R 18401274 18421442 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF687OWT/ 15423209 Kevin White, UChicago ab787cbca3f3bd4efafec46630083661 https://www.encodeproject.org/files/ENCFF158IBS/@@download/ENCFF158IBS.bigWig released s3://encode-public/2015/10/06/73695a2e-7c78-449b-b557-50e992dbdb14/ENCFF158IBS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF744AKA bam bam alignments dm6 ENCSR247VJD Control ChIP-seq /fly-donors/ENCDO723MNZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42664/'], '@type': ['Target', 'Item'], 'name': 'btn-dmelanogaster', 'label': 'btn', '@id': '/targets/btn-dmelanogaster/', 'title': 'btn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5985e578-e238-4ef0-a2bf-ad17a4cf5702', 'status': 'released'} dm3 3R 18401274 18421442 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF146CNW/ 1164847710 Kevin White, UChicago 236cbff2214fdbc76523296e38e97c59 https://www.encodeproject.org/files/ENCFF744AKA/@@download/ENCFF744AKA.bam released s3://encode-public/2016/04/20/2a8a9264-6dad-488b-9d97-637462087126/ENCFF744AKA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF907VHF bigWig bigWig read-depth normalized signal dm6 ENCSR247VJD Control ChIP-seq /fly-donors/ENCDO723MNZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42664/'], '@type': ['Target', 'Item'], 'name': 'btn-dmelanogaster', 'label': 'btn', '@id': '/targets/btn-dmelanogaster/', 'title': 'btn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5985e578-e238-4ef0-a2bf-ad17a4cf5702', 'status': 'released'} dm3 3R 18401274 18421442 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF744AKA/ 17547636 Kevin White, UChicago b65ac9b2f4897c5f12220f1f3308a8cf https://www.encodeproject.org/files/ENCFF907VHF/@@download/ENCFF907VHF.bigWig released s3://encode-public/2016/06/21/b690c11e-328a-4ac3-91d4-f00f264b7330/ENCFF907VHF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF838AYL bigWig bigWig signal of unique reads dm6 ENCSR247VJD Control ChIP-seq /fly-donors/ENCDO723MNZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42664/'], '@type': ['Target', 'Item'], 'name': 'btn-dmelanogaster', 'label': 'btn', '@id': '/targets/btn-dmelanogaster/', 'title': 'btn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5985e578-e238-4ef0-a2bf-ad17a4cf5702', 'status': 'released'} dm3 3R 18401274 18421442 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF744AKA/ 17510497 Kevin White, UChicago 8b4383c328eaa0411610757439c2976c https://www.encodeproject.org/files/ENCFF838AYL/@@download/ENCFF838AYL.bigWig released s3://encode-public/2016/06/21/516c9c26-89b0-4835-af83-6df079369ec9/ENCFF838AYL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000PNU bam bam alignments hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 1047426677 Richard Myers, HAIB 887091a71ba457108d9dc00513522de5 https://www.encodeproject.org/files/ENCFF000PNU/@@download/ENCFF000PNU.bam archived s3://encode-public/2012/01/23/437edfcc-6dfa-42e9-9764-0e6bb0428e07/ENCFF000PNU.bam Lab custom hg19 archived low read depth, low read length ENCFF000PNV bam bam alignments hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 1502036886 Richard Myers, HAIB 5700406d811b3877bddb977b6825522f https://www.encodeproject.org/files/ENCFF000PNV/@@download/ENCFF000PNV.bam archived s3://encode-public/2012/01/23/a5eebe4f-0c70-45f4-8137-df557e04545c/ENCFF000PNV.bam Lab custom hg19 archived low read depth, low read length ENCFF000POA bigWig bigWig raw signal hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 14261385 Richard Myers, HAIB 5a3e4284b9b82cde03d006e260c468c8 https://www.encodeproject.org/files/ENCFF000POA/@@download/ENCFF000POA.bigWig archived s3://encode-public/2012/01/23/b9fd81c1-0416-4d9e-8c03-f81cffc81c91/ENCFF000POA.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000POB bigWig bigWig raw signal hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 21626418 Richard Myers, HAIB b653b48ed167466b35124e3e6d057116 https://www.encodeproject.org/files/ENCFF000POB/@@download/ENCFF000POB.bigWig archived s3://encode-public/2012/01/23/09e4449a-6f21-4392-9048-30ac1bf0bc79/ENCFF000POB.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000POC fastq fastq reads ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1231367583 Richard Myers, HAIB f53d1534e9faef6bfcfab96039088644 https://www.encodeproject.org/files/ENCFF000POC/@@download/ENCFF000POC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/75240e94-76fe-4990-8594-aaaad260c9ac/ENCFF000POC.fastq.gz low read depth, low read length ENCFF000POH fastq fastq reads ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 3300061967 Richard Myers, HAIB d561b5ac9b75e3a4d98c8499f747fe3b https://www.encodeproject.org/files/ENCFF000POH/@@download/ENCFF000POH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/18b305dd-f40d-4225-96fe-c155049b75e6/ENCFF000POH.fastq.gz low read depth, low read length ENCFF060SPZ bam bam unfiltered alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POC/, /files/ENCFF643CGH/ 1537248717 ENCODE Processing Pipeline 762687a01e89fb70e15497240df0fd46 https://www.encodeproject.org/files/ENCFF060SPZ/@@download/ENCFF060SPZ.bam released s3://encode-public/2016/10/26/3f5ef888-694b-43a7-a004-404780560159/ENCFF060SPZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF943DZB bam bam alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POC/, /files/ENCFF643CGH/ 783792757 ENCODE Processing Pipeline 844f0d7d0675f37ade8822d864517af8 https://www.encodeproject.org/files/ENCFF943DZB/@@download/ENCFF943DZB.bam released s3://encode-public/2016/10/26/7f406432-774c-4f4b-859b-6aa8f566a0ab/ENCFF943DZB.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF030XFZ bam bam unfiltered alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POH/, /files/ENCFF643CGH/ 3708112479 ENCODE Processing Pipeline 6413807f223a7cca365b5a4ad193b39d https://www.encodeproject.org/files/ENCFF030XFZ/@@download/ENCFF030XFZ.bam released s3://encode-public/2016/10/26/5dace9b7-ebdb-42e2-9c32-10bc2e0c7b9f/ENCFF030XFZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF193YIO bam bam alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POH/, /files/ENCFF643CGH/ 1081734979 ENCODE Processing Pipeline 66c3565ceb2c3138e44b3ce617d6cacc https://www.encodeproject.org/files/ENCFF193YIO/@@download/ENCFF193YIO.bam released s3://encode-public/2016/10/26/a003fb5d-2174-49f6-aaa1-8ce59cfde781/ENCFF193YIO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF334MOO bam bam alignments hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POC/, /files/ENCFF807MUK/ 784129317 ENCODE Processing Pipeline cb1936a02190ad7b24635db89ce89eeb https://www.encodeproject.org/files/ENCFF334MOO/@@download/ENCFF334MOO.bam released s3://encode-public/2016/11/13/590bd524-2b6a-4e46-8dbb-70fc87d65bdf/ENCFF334MOO.bam ENCODE3 hg19 archived low read depth, low read length ENCFF787YGO bam bam unfiltered alignments hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POC/, /files/ENCFF807MUK/ 1532488752 ENCODE Processing Pipeline 8f10f51752c2e770c43c65b810cc4250 https://www.encodeproject.org/files/ENCFF787YGO/@@download/ENCFF787YGO.bam released s3://encode-public/2016/11/13/cf0a6583-1989-463b-89b0-2f5a4adfdd10/ENCFF787YGO.bam ENCODE3 hg19 archived low read depth, low read length ENCFF871KQM bam bam unfiltered alignments hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POH/, /files/ENCFF807MUK/ 3697916076 ENCODE Processing Pipeline 06fea9f28704a526da9c90b3c44c1666 https://www.encodeproject.org/files/ENCFF871KQM/@@download/ENCFF871KQM.bam released s3://encode-public/2016/11/13/8bbb7232-1cd0-4e3d-a38d-007be63cfc77/ENCFF871KQM.bam ENCODE3 hg19 archived low read depth, low read length ENCFF472OOV bam bam alignments hg19 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POH/, /files/ENCFF807MUK/ 1081954840 ENCODE Processing Pipeline 7241d1a21b671d14d9b08ed4d48e87b9 https://www.encodeproject.org/files/ENCFF472OOV/@@download/ENCFF472OOV.bam released s3://encode-public/2016/11/13/d47893c9-dce2-44b6-802d-aa43a5ea979f/ENCFF472OOV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF875HPK bam bam alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POH/, /files/ENCFF110MCL/ 1170985256 ENCODE Processing Pipeline ef98e968b5034f72e3f9edb60f120dd6 https://www.encodeproject.org/files/ENCFF875HPK/@@download/ENCFF875HPK.bam released s3://encode-public/2020/10/28/97c6be22-eabd-41d1-b53b-27e44683c266/ENCFF875HPK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF300VAV bam bam unfiltered alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000POC/ 1512447461 ENCODE Processing Pipeline b13c406d704e0069b4fd75be63edb588 https://www.encodeproject.org/files/ENCFF300VAV/@@download/ENCFF300VAV.bam released s3://encode-public/2020/10/28/3a9b7052-f578-4d44-8e4d-5f46443cfa1c/ENCFF300VAV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF276XFA bam bam unfiltered alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POH/, /files/ENCFF110MCL/ 3738984306 ENCODE Processing Pipeline 87cc000b87de2affc4bd440304e9a124 https://www.encodeproject.org/files/ENCFF276XFA/@@download/ENCFF276XFA.bam released s3://encode-public/2020/10/28/19657bec-1d65-48fe-8821-1e7fb6fc5992/ENCFF276XFA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF527WLW bam bam alignments GRCh38 ENCSR000BLN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000POC/ 854196681 ENCODE Processing Pipeline 78bdb684bfe9920bcea8cb9061cfb12c https://www.encodeproject.org/files/ENCFF527WLW/@@download/ENCFF527WLW.bam released s3://encode-public/2020/10/28/89c35262-e756-470c-8cf8-24f8aba28bb2/ENCFF527WLW.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF793JGE bam bam unfiltered alignments hg19 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002DTS/, /files/ENCFF807MUK/, /files/ENCFF002EFG/ 7174771241 ENCODE Processing Pipeline 96cd39dac8b15e36e0e8e2d3ab9dfee5 https://www.encodeproject.org/files/ENCFF793JGE/@@download/ENCFF793JGE.bam released s3://encode-public/2018/02/21/7f51d225-897f-4ad9-a0db-dd5af65ffbcd/ENCFF793JGE.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF723DGS bam bam unfiltered alignments hg19 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFI/, /files/ENCFF002DTU/ 6457695502 ENCODE Processing Pipeline 9039aa84c13ae17af868f5987202df0a https://www.encodeproject.org/files/ENCFF723DGS/@@download/ENCFF723DGS.bam released s3://encode-public/2018/02/21/ce63c775-2bcb-4d31-8788-d082d6352150/ENCFF723DGS.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF002DTS fastq fastq reads ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EFG/ 3313560042 Michael Snyder, Stanford a1302e886528a35335a7014d98636278 SRA:SRR5111272 https://www.encodeproject.org/files/ENCFF002DTS/@@download/ENCFF002DTS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/03/751d31ce-5ed8-4016-8c86-d46f2e07de75/ENCFF002DTS.fastq.gz mild to moderate bottlenecking ENCFF002DTU fastq fastq reads ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EFI/ 2986280122 Michael Snyder, Stanford db5b5f0303d472c18fe72e6fb36c09da SRA:SRR5111271 https://www.encodeproject.org/files/ENCFF002DTU/@@download/ENCFF002DTU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/03/b4a21f19-7ac6-4df6-ad37-bc4c07088547/ENCFF002DTU.fastq.gz mild to moderate bottlenecking ENCFF002EFG fastq fastq reads ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002DTS/ 3379762503 Michael Snyder, Stanford 489f30e969cb54b0f779d012dc69b0b2 SRA:SRR5111272 https://www.encodeproject.org/files/ENCFF002EFG/@@download/ENCFF002EFG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/f0f50ee9-c351-4105-8d6f-f7b23cd10ad2/ENCFF002EFG.fastq.gz mild to moderate bottlenecking ENCFF002EFI fastq fastq reads ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002DTU/ 2935131073 Michael Snyder, Stanford b70463f06cd7aaa0602929034b39fa25 SRA:SRR5111271 https://www.encodeproject.org/files/ENCFF002EFI/@@download/ENCFF002EFI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/903db2b5-4d8a-4805-9a9c-7b19e1a20cda/ENCFF002EFI.fastq.gz mild to moderate bottlenecking ENCFF049MPQ bam bam alignments hg19 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002DTS/, /files/ENCFF807MUK/, /files/ENCFF002EFG/ 6096495143 ENCODE Processing Pipeline 3ab921497e6a9d96fe2739cb221868ba https://www.encodeproject.org/files/ENCFF049MPQ/@@download/ENCFF049MPQ.bam released s3://encode-public/2015/10/29/02aa4766-a8ff-4220-807e-fea2883a4175/ENCFF049MPQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF583FAG bam bam alignments hg19 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFI/, /files/ENCFF002DTU/ 5620763106 ENCODE Processing Pipeline 8e4791ad0a7e1422591d1ba609f32857 https://www.encodeproject.org/files/ENCFF583FAG/@@download/ENCFF583FAG.bam released s3://encode-public/2015/10/29/714be55b-4ea3-4fe0-b037-cf13fc1d486d/ENCFF583FAG.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF466ILY bam bam unfiltered alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFI/, /files/ENCFF002DTU/ 6471356690 ENCODE Processing Pipeline 086c33ab774397000d97f19748fe4c7e https://www.encodeproject.org/files/ENCFF466ILY/@@download/ENCFF466ILY.bam released s3://encode-public/2016/05/06/54d8a414-3870-425e-9bce-60f23f3e1f6c/ENCFF466ILY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF290GNL bam bam unfiltered alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002DTS/, /files/ENCFF002EFG/, /files/ENCFF643CGH/ 7189207281 ENCODE Processing Pipeline ca3e1e29fc2cf2eb9eb71ff4d7384748 https://www.encodeproject.org/files/ENCFF290GNL/@@download/ENCFF290GNL.bam released s3://encode-public/2016/05/06/40037887-c8b6-42c8-b809-7f6e4796c736/ENCFF290GNL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF426RDP bam bam alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFI/, /files/ENCFF002DTU/ 5626600563 ENCODE Processing Pipeline b7b5004c4d1de084e602fdd2166f420d https://www.encodeproject.org/files/ENCFF426RDP/@@download/ENCFF426RDP.bam released s3://encode-public/2016/05/06/56845940-4191-4c02-b522-6ffb3994ce17/ENCFF426RDP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF291AFY bam bam alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002DTS/, /files/ENCFF002EFG/, /files/ENCFF643CGH/ 6102981357 ENCODE Processing Pipeline 84a7385de97ebc87cf22d1745fe03425 https://www.encodeproject.org/files/ENCFF291AFY/@@download/ENCFF291AFY.bam released s3://encode-public/2016/05/06/a29ff7f2-3adb-4cd7-a7ac-017990a5fd61/ENCFF291AFY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF712GDD bam bam unfiltered alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EFI/, /files/ENCFF002DTU/, /files/ENCFF110MCL/ 6356051692 ENCODE Processing Pipeline 466bc003bc785b64194127ec67eaa2d3 https://www.encodeproject.org/files/ENCFF712GDD/@@download/ENCFF712GDD.bam released s3://encode-public/2020/06/13/779074ca-36a0-40c2-b50b-49413f32bdb0/ENCFF712GDD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF220TQP bam bam alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EFI/, /files/ENCFF002DTU/, /files/ENCFF110MCL/ 5317789007 ENCODE Processing Pipeline c27cd79b27033cd05d8e54177391d6ec https://www.encodeproject.org/files/ENCFF220TQP/@@download/ENCFF220TQP.bam released s3://encode-public/2020/06/13/2ad84530-b9c7-4885-9593-9f65b02e6a86/ENCFF220TQP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF406VBI bam bam unfiltered alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFG/, /files/ENCFF002DTS/, /files/ENCFF110MCL/ 7062399969 ENCODE Processing Pipeline dadd5e7d90152cd8eb229fa984539a8f https://www.encodeproject.org/files/ENCFF406VBI/@@download/ENCFF406VBI.bam released s3://encode-public/2020/06/13/5a49ee86-84c7-4813-995b-9ca786818c08/ENCFF406VBI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF756SZH bam bam alignments GRCh38 ENCSR217LRF Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFG/, /files/ENCFF002DTS/, /files/ENCFF110MCL/ 5770719202 ENCODE Processing Pipeline a9a0dfe06e3beeb92c14f02a44b16006 https://www.encodeproject.org/files/ENCFF756SZH/@@download/ENCFF756SZH.bam released s3://encode-public/2020/06/13/9b2e7289-9862-48d7-b33b-caf87f091e10/ENCFF756SZH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF915TDN fastq fastq reads ENCSR684NLC Control ChIP-seq /fly-donors/ENCDO956XAN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34280/'], '@type': ['Target', 'Item'], 'name': 'gcm2-dmelanogaster', 'label': 'gcm2', '@id': '/targets/gcm2-dmelanogaster/', 'title': 'gcm2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '34790b40-d8fd-40f9-b31c-6dc55820b6a5', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 286612692 Kevin White, UChicago 36f79f8123c9f13ac6904d1e9d0efc6e https://www.encodeproject.org/files/ENCFF915TDN/@@download/ENCFF915TDN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/8e16bb72-eebf-410e-b51a-356e2e3b213d/ENCFF915TDN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF799AXA bam bam alignments dm3 ENCSR684NLC Control ChIP-seq /fly-donors/ENCDO956XAN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34280/'], '@type': ['Target', 'Item'], 'name': 'gcm2-dmelanogaster', 'label': 'gcm2', '@id': '/targets/gcm2-dmelanogaster/', 'title': 'gcm2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '34790b40-d8fd-40f9-b31c-6dc55820b6a5', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF915TDN/ 411521590 Kevin White, UChicago 032b130eeaf5440d81fc05b244fdd0a2 https://www.encodeproject.org/files/ENCFF799AXA/@@download/ENCFF799AXA.bam released s3://encode-public/2015/08/05/9787f59e-cdd3-47a6-b8c6-17a59db1de57/ENCFF799AXA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF729XXN bigWig bigWig read-depth normalized signal dm3 ENCSR684NLC Control ChIP-seq /fly-donors/ENCDO956XAN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34280/'], '@type': ['Target', 'Item'], 'name': 'gcm2-dmelanogaster', 'label': 'gcm2', '@id': '/targets/gcm2-dmelanogaster/', 'title': 'gcm2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '34790b40-d8fd-40f9-b31c-6dc55820b6a5', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF799AXA/ 15241156 Kevin White, UChicago febb5e1b136d0f01e9a72dbc76ea0ab6 https://www.encodeproject.org/files/ENCFF729XXN/@@download/ENCFF729XXN.bigWig released s3://encode-public/2015/10/05/c734ba46-cec9-4ad6-ab36-fc7f69b93718/ENCFF729XXN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF081HWZ bigWig bigWig signal of unique reads dm3 ENCSR684NLC Control ChIP-seq /fly-donors/ENCDO956XAN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34280/'], '@type': ['Target', 'Item'], 'name': 'gcm2-dmelanogaster', 'label': 'gcm2', '@id': '/targets/gcm2-dmelanogaster/', 'title': 'gcm2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '34790b40-d8fd-40f9-b31c-6dc55820b6a5', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF799AXA/ 15197764 Kevin White, UChicago aab7c9ae5a9d304a802176a92f4ee83e https://www.encodeproject.org/files/ENCFF081HWZ/@@download/ENCFF081HWZ.bigWig released s3://encode-public/2015/10/05/796d5bf2-356e-4577-b65c-99548aee6ed6/ENCFF081HWZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF781GZK bam bam alignments dm6 ENCSR684NLC Control ChIP-seq /fly-donors/ENCDO956XAN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34280/'], '@type': ['Target', 'Item'], 'name': 'gcm2-dmelanogaster', 'label': 'gcm2', '@id': '/targets/gcm2-dmelanogaster/', 'title': 'gcm2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '34790b40-d8fd-40f9-b31c-6dc55820b6a5', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF915TDN/ 409681407 Kevin White, UChicago 9c536c993e087de9c949e10936a8fc69 https://www.encodeproject.org/files/ENCFF781GZK/@@download/ENCFF781GZK.bam released s3://encode-public/2016/04/21/b0562d15-6cb1-4eea-a046-1b287eb01c65/ENCFF781GZK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF229NIL bigWig bigWig read-depth normalized signal dm6 ENCSR684NLC Control ChIP-seq /fly-donors/ENCDO956XAN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34280/'], '@type': ['Target', 'Item'], 'name': 'gcm2-dmelanogaster', 'label': 'gcm2', '@id': '/targets/gcm2-dmelanogaster/', 'title': 'gcm2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '34790b40-d8fd-40f9-b31c-6dc55820b6a5', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF781GZK/ 17350038 Kevin White, UChicago f60cca0dfdce5272464438597d37060f https://www.encodeproject.org/files/ENCFF229NIL/@@download/ENCFF229NIL.bigWig released s3://encode-public/2016/06/20/9161a3e5-9aa8-4957-bf81-d93580d35e04/ENCFF229NIL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF047MHT bigWig bigWig signal of unique reads dm6 ENCSR684NLC Control ChIP-seq /fly-donors/ENCDO956XAN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34280/'], '@type': ['Target', 'Item'], 'name': 'gcm2-dmelanogaster', 'label': 'gcm2', '@id': '/targets/gcm2-dmelanogaster/', 'title': 'gcm2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '34790b40-d8fd-40f9-b31c-6dc55820b6a5', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF781GZK/ 17277404 Kevin White, UChicago 3c7d4c1f76611e67192841d25a6840d9 https://www.encodeproject.org/files/ENCFF047MHT/@@download/ENCFF047MHT.bigWig released s3://encode-public/2016/06/20/9c84b5fa-4b51-4748-b4e3-702dfb0f2f7a/ENCFF047MHT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF292SYX fastq fastq reads ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 966874157 Xiang-Dong Fu, UCSD 658257351c0aa71f99f8b376c575f514 SRA:SRR10049690 https://www.encodeproject.org/files/ENCFF292SYX/@@download/ENCFF292SYX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/97cbcc53-a2c9-4c6b-9763-e8f2fe1d07dd/ENCFF292SYX.fastq.gz low read length ENCFF887XCD fastq fastq reads ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1243171922 Xiang-Dong Fu, UCSD fd09abb5df8cb94a2114c6ef252619fa SRA:SRR10049689 https://www.encodeproject.org/files/ENCFF887XCD/@@download/ENCFF887XCD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/8261b526-54dc-464d-b523-a835c12ef599/ENCFF887XCD.fastq.gz low read length ENCFF609QFO bam bam alignments hg19 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF292SYX/ 1056133902 ENCODE Processing Pipeline 1ac6a5dca05a74e1daaf788d9d0fca17 https://www.encodeproject.org/files/ENCFF609QFO/@@download/ENCFF609QFO.bam released s3://encode-public/2015/11/12/4b45114a-9d5e-472f-be6b-88fae170d5da/ENCFF609QFO.bam ENCODE3 hg19 archived low read length ENCFF536AHS bam bam alignments hg19 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF887XCD/ 1312963741 ENCODE Processing Pipeline 5cf11645b7b508c0ca34495146ebeed2 https://www.encodeproject.org/files/ENCFF536AHS/@@download/ENCFF536AHS.bam released s3://encode-public/2015/11/12/9c235f27-1a9b-43a9-b8f0-34f25d0f1664/ENCFF536AHS.bam ENCODE3 hg19 archived low read length ENCFF450GNQ bam bam alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF292SYX/ 1055166213 ENCODE Processing Pipeline 9bb2fdd70ead4476eac3e261dbef0bef https://www.encodeproject.org/files/ENCFF450GNQ/@@download/ENCFF450GNQ.bam released s3://encode-public/2016/05/06/56ceb6f1-874b-4356-9db4-29f24387efa1/ENCFF450GNQ.bam ENCODE3 GRCh38 archived low read length ENCFF565EDH bam bam unfiltered alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF887XCD/ 1775661695 ENCODE Processing Pipeline 6f2d17af0c10d358755d1afdd6051c6d https://www.encodeproject.org/files/ENCFF565EDH/@@download/ENCFF565EDH.bam released s3://encode-public/2016/05/06/723ba9e9-e049-42de-9ef0-b8ac91335c9d/ENCFF565EDH.bam ENCODE3 GRCh38 archived low read length ENCFF901YVZ bam bam alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF887XCD/ 1311876480 ENCODE Processing Pipeline 9bb3211d18b6da830f777a7280cd8c3a https://www.encodeproject.org/files/ENCFF901YVZ/@@download/ENCFF901YVZ.bam released s3://encode-public/2016/05/06/1d4e8ded-a43d-40a3-b2e8-6959a5fe57de/ENCFF901YVZ.bam ENCODE3 GRCh38 archived low read length ENCFF670ZTJ bam bam unfiltered alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF292SYX/ 1392769075 ENCODE Processing Pipeline 84fee5dee32fe02f23f7f234dbfe66ed https://www.encodeproject.org/files/ENCFF670ZTJ/@@download/ENCFF670ZTJ.bam released s3://encode-public/2016/05/06/6fe5ede9-0847-4ccc-88ac-c6ad9503a217/ENCFF670ZTJ.bam ENCODE3 GRCh38 archived low read length ENCFF523LSO bam bam unfiltered alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF887XCD/, /files/ENCFF110MCL/ 1745371972 ENCODE Processing Pipeline 16718c3d7cdc4fd9222440b3683ccb8b https://www.encodeproject.org/files/ENCFF523LSO/@@download/ENCFF523LSO.bam released s3://encode-public/2020/10/27/27405a2e-0e72-46e8-8dd9-68ddb85e28c7/ENCFF523LSO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF213VOX bam bam alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF292SYX/ 1085040537 ENCODE Processing Pipeline c7f7a78ddeccf32650e4403569d2818f https://www.encodeproject.org/files/ENCFF213VOX/@@download/ENCFF213VOX.bam released s3://encode-public/2020/10/27/80ae5f6a-01e8-47d0-856c-5ed4c667c681/ENCFF213VOX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF056NRS bam bam unfiltered alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF292SYX/ 1371322107 ENCODE Processing Pipeline 56453270fcfc3bb14fee22950609eea3 https://www.encodeproject.org/files/ENCFF056NRS/@@download/ENCFF056NRS.bam released s3://encode-public/2020/10/27/424d3cc8-6644-4b30-9df1-b382200f5b43/ENCFF056NRS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF353LPD bam bam unfiltered alignments hg19 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF292SYX/ 1387762598 ENCODE Processing Pipeline c3927ddc282a76a24dfc7bdbf70706c3 https://www.encodeproject.org/files/ENCFF353LPD/@@download/ENCFF353LPD.bam released s3://encode-public/2018/01/12/83630bd8-d3f6-4adb-94f2-46cad87ff538/ENCFF353LPD.bam ENCODE3 hg19 archived low read length ENCFF044TGH bam bam unfiltered alignments hg19 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF887XCD/ 1768452917 ENCODE Processing Pipeline e2064b42c79fb197202b6ce2ee344e65 https://www.encodeproject.org/files/ENCFF044TGH/@@download/ENCFF044TGH.bam released s3://encode-public/2018/01/12/64546dcc-75c3-4d4d-80ac-dbecce8b4f70/ENCFF044TGH.bam ENCODE3 hg19 archived low read length ENCFF905ZTG bam bam alignments GRCh38 ENCSR975KJI Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF887XCD/, /files/ENCFF110MCL/ 1348769534 ENCODE Processing Pipeline 583f6831901cd1fbc7688686556ceeb1 https://www.encodeproject.org/files/ENCFF905ZTG/@@download/ENCFF905ZTG.bam released s3://encode-public/2020/10/27/10740245-8b54-470e-bf1e-6262f11ee36d/ENCFF905ZTG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF488USM fastq fastq reads ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 137772548 Michael Snyder, Stanford 29bf657277acefa522deb1a871e352c2 https://www.encodeproject.org/files/ENCFF488USM/@@download/ENCFF488USM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/806da8e3-9b06-4ab2-abd4-7f9fabcfc1d8/ENCFF488USM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF450WMP fastq fastq reads ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 204433608 Michael Snyder, Stanford d19d5f0bc909f06f16c5a7373463cf56 https://www.encodeproject.org/files/ENCFF450WMP/@@download/ENCFF450WMP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a6f2d3ed-b9a1-4fcd-b62f-27b7b4f4e0e4/ENCFF450WMP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF854EAF bam bam alignments ce10 ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF488USM/, /files/ENCFF450WMP/, /files/ENCFF987UMF/ 457932621 Kevin White, UChicago e6d1ea186be7c27894dab74129147754 https://www.encodeproject.org/files/ENCFF854EAF/@@download/ENCFF854EAF.bam released s3://encode-public/2016/10/18/998e13a5-48bf-42bf-ba49-e4c3fe667909/ENCFF854EAF.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF397IAF bam bam alignments ce11 ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF488USM/, /files/ENCFF450WMP/, /files/ENCFF586MOL/ 458506220 Kevin White, UChicago 3a813ddb0512ea932f950852fe1657bd https://www.encodeproject.org/files/ENCFF397IAF/@@download/ENCFF397IAF.bam released s3://encode-public/2016/10/18/fbe782f4-235a-4134-876b-ac3c1b9791d9/ENCFF397IAF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF408EYU bigWig bigWig read-depth normalized signal ce10 ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF854EAF/ 10096588 Kevin White, UChicago 945ab7e0b3bead498978ec124ac66978 https://www.encodeproject.org/files/ENCFF408EYU/@@download/ENCFF408EYU.bigWig released s3://encode-public/2016/10/20/09762818-4854-47c1-9af0-3bbfa7ce11aa/ENCFF408EYU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF684MMI bigWig bigWig signal of unique reads ce10 ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF854EAF/ 10056202 Kevin White, UChicago 0c2e739e5e33a2a78a95a8954c9ae474 https://www.encodeproject.org/files/ENCFF684MMI/@@download/ENCFF684MMI.bigWig released s3://encode-public/2016/10/20/825fbe36-01a1-4657-9599-e010bd2fa7cb/ENCFF684MMI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF137YZM bigWig bigWig signal of unique reads ce11 ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF397IAF/ 10053171 Kevin White, UChicago e3b013dd74d6ed0939c51ebff47b4b61 https://www.encodeproject.org/files/ENCFF137YZM/@@download/ENCFF137YZM.bigWig released s3://encode-public/2016/10/20/beec912e-5bbf-458b-a734-8cc94dd41224/ENCFF137YZM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF213EJA bigWig bigWig read-depth normalized signal ce11 ENCSR301FPJ Control ChIP-seq /worm-donors/ENCDO365TJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179375/'], '@type': ['Target', 'Item'], 'name': 'ztf-7-celegans', 'label': 'ztf-7', '@id': '/targets/ztf-7-celegans/', 'title': 'ztf-7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0519d086-1492-4892-8415-d1f606083cbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF397IAF/ 10094472 Kevin White, UChicago bffbf95bba71e50eaf611a5a35da74be https://www.encodeproject.org/files/ENCFF213EJA/@@download/ENCFF213EJA.bigWig released s3://encode-public/2016/10/20/4c4d837b-6d63-4699-bdf1-6939c78e23cb/ENCFF213EJA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF001HMT bam bam alignments hg19 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNC/ 609913749 John Stamatoyannopoulos, UW 8695fa41a3a4d66742f10c0c58d1c641 https://www.encodeproject.org/files/ENCFF001HMT/@@download/ENCFF001HMT.bam archived s3://encode-public/2011/06/25/ae13a10b-e671-4352-9ee5-fc6b09bea2ee/ENCFF001HMT.bam Lab custom hg19 archived low read depth, low read length ENCFF001HMU bigWig bigWig raw signal hg19 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HMT/ 144502584 John Stamatoyannopoulos, UW b63122c7e3a0b496a459f56dc0711f96 https://www.encodeproject.org/files/ENCFF001HMU/@@download/ENCFF001HMU.bigWig archived s3://encode-public/2011/06/25/e68a7092-1044-48f1-8734-01dc24f97ae5/ENCFF001HMU.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HNC fastq fastq reads ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 696962729 John Stamatoyannopoulos, UW 8aebd0bae90b27cd0435541b9149c898 https://www.encodeproject.org/files/ENCFF001HNC/@@download/ENCFF001HNC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/59a20faa-6445-478c-8d7c-33626226dfc9/ENCFF001HNC.fastq.gz low read depth, low read length ENCFF854RYT bam bam unfiltered alignments GRCh38 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNC/, /files/ENCFF643CGH/ 843760619 ENCODE Processing Pipeline 7570924c9446e1a955861ccb38f068f9 https://www.encodeproject.org/files/ENCFF854RYT/@@download/ENCFF854RYT.bam released s3://encode-public/2016/08/09/7de22804-74ce-406e-b177-8a0eee9ef33b/ENCFF854RYT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF846BEG bam bam alignments GRCh38 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNC/, /files/ENCFF643CGH/ 555471289 ENCODE Processing Pipeline 8027810c3a02ee43481f3b132dff083b https://www.encodeproject.org/files/ENCFF846BEG/@@download/ENCFF846BEG.bam released s3://encode-public/2016/08/09/6a3c9676-dbd0-445b-9b0e-2c36d3bb31fe/ENCFF846BEG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF080FAA bam bam unfiltered alignments hg19 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNC/, /files/ENCFF807MUK/ 840024635 ENCODE Processing Pipeline 5dcc177ce744fbd4ba82eebbabc23d44 https://www.encodeproject.org/files/ENCFF080FAA/@@download/ENCFF080FAA.bam released s3://encode-public/2016/11/13/f6cde9b5-8b9c-4009-afd7-9ac6bb9d2fad/ENCFF080FAA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF986XGP bam bam alignments hg19 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNC/, /files/ENCFF807MUK/ 555601565 ENCODE Processing Pipeline 50a14f1bb7e72aa30b64badf0f4e2261 https://www.encodeproject.org/files/ENCFF986XGP/@@download/ENCFF986XGP.bam released s3://encode-public/2016/11/13/75ca0efd-4a0b-4a34-8515-5435bf255bdd/ENCFF986XGP.bam ENCODE3 hg19 archived low read depth, low read length ENCFF721XSP bam bam unfiltered alignments GRCh38 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNC/, /files/ENCFF110MCL/ 826539865 ENCODE Processing Pipeline 262679d21dd79e06c461edcbf9543723 https://www.encodeproject.org/files/ENCFF721XSP/@@download/ENCFF721XSP.bam released s3://encode-public/2020/09/03/f2c9a2b2-fd4b-420a-a8b9-d9126fcbab0f/ENCFF721XSP.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF064SFP bam bam alignments GRCh38 ENCSR000DTV Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNC/, /files/ENCFF110MCL/ 611685799 ENCODE Processing Pipeline 28a006fb188ccdd57520bc7df575a483 https://www.encodeproject.org/files/ENCFF064SFP/@@download/ENCFF064SFP.bam released s3://encode-public/2020/09/03/4a704939-120d-4e0b-b92c-88db8dfc64e7/ENCFF064SFP.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF068LQW bam bam unfiltered alignments hg19 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFR/, /files/ENCFF002EFP/, /files/ENCFF807MUK/ 5818889154 ENCODE Processing Pipeline afe3ec93f0991db2bfdd376e51612c7e https://www.encodeproject.org/files/ENCFF068LQW/@@download/ENCFF068LQW.bam released s3://encode-public/2018/02/21/7ea6235b-7433-41c2-912c-ec100b2d259e/ENCFF068LQW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF002EFL fastq fastq reads ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EFM/ 2518986148 Michael Snyder, Stanford b29862a3bba9dcebc3f70f636fed1103 SRA:SRR6213266 https://www.encodeproject.org/files/ENCFF002EFL/@@download/ENCFF002EFL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/1f253853-8b64-4560-bc58-917ca8385156/ENCFF002EFL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EFM fastq fastq reads ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EFL/ 2493561877 Michael Snyder, Stanford f23b8a206605f52a18495be4853b12db SRA:SRR6213266 https://www.encodeproject.org/files/ENCFF002EFM/@@download/ENCFF002EFM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/dce97a46-d8d8-4978-8e85-c552917e57f3/ENCFF002EFM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EFP fastq fastq reads ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EFR/ 2711684961 Michael Snyder, Stanford 0edfbd371c3624967f691bd268f6ca89 SRA:SRR6213264 https://www.encodeproject.org/files/ENCFF002EFP/@@download/ENCFF002EFP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/6d1f7bb3-0fbc-4900-82f1-8ee13847d63a/ENCFF002EFP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EFR fastq fastq reads ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EFP/ 2739352698 Michael Snyder, Stanford 6f77817e98406b6132c7202b81c89cc6 SRA:SRR6213264 https://www.encodeproject.org/files/ENCFF002EFR/@@download/ENCFF002EFR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/419c8b95-d4be-447a-9ae4-bb5916826d2f/ENCFF002EFR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF080XQT bam bam alignments hg19 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFR/, /files/ENCFF002EFP/, /files/ENCFF807MUK/ 4749368595 ENCODE Processing Pipeline ae135444271ce204fdf7be393a0e81a3 https://www.encodeproject.org/files/ENCFF080XQT/@@download/ENCFF080XQT.bam released s3://encode-public/2015/10/29/91dd9410-7d56-4c7f-9f6f-9a00f1cbefdd/ENCFF080XQT.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF567LOY bam bam alignments hg19 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFL/, /files/ENCFF002EFM/ 4338919932 ENCODE Processing Pipeline 5d6e089bd2546f76ec6c6efacae13ea2 https://www.encodeproject.org/files/ENCFF567LOY/@@download/ENCFF567LOY.bam archived s3://encode-public/2015/10/29/4fc646db-ce26-4c4c-8491-f08e8558073b/ENCFF567LOY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF183IWW bam bam unfiltered alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFL/, /files/ENCFF002EFM/ 5374892178 ENCODE Processing Pipeline 9f8cef9a6a0340450e4bc6698856cde9 https://www.encodeproject.org/files/ENCFF183IWW/@@download/ENCFF183IWW.bam archived s3://encode-public/2016/05/06/ef039ac5-1d74-43df-9bc9-3672470d24f0/ENCFF183IWW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF812FPR bam bam unfiltered alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFR/, /files/ENCFF002EFP/, /files/ENCFF643CGH/ 5827405990 ENCODE Processing Pipeline fea954cc96e7d35779b97e5a4238fc3d https://www.encodeproject.org/files/ENCFF812FPR/@@download/ENCFF812FPR.bam released s3://encode-public/2016/05/06/4f986d81-ebf0-42de-a229-def12cfd268e/ENCFF812FPR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF901WJA bam bam alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFL/, /files/ENCFF002EFM/ 4344157770 ENCODE Processing Pipeline f995631b8266433f7fc9630d63b19cdb https://www.encodeproject.org/files/ENCFF901WJA/@@download/ENCFF901WJA.bam archived s3://encode-public/2016/05/06/554f0d1f-4baf-42d9-a8a5-189a0d572388/ENCFF901WJA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF056HWK bam bam alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFR/, /files/ENCFF002EFP/, /files/ENCFF643CGH/ 4755664604 ENCODE Processing Pipeline d528ed083e75b0ca6293949179bbce90 https://www.encodeproject.org/files/ENCFF056HWK/@@download/ENCFF056HWK.bam released s3://encode-public/2016/05/06/8199ee9f-f586-45e5-a9d1-25a6cbb251ea/ENCFF056HWK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF110UGI fastq fastq reads ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_2 101 paired-ended 1 /files/ENCFF672SZH/ 2194166892 Michael Snyder, Stanford d1041b48961aad57723ea2f596d1bbef SRA:SRR6213265 https://www.encodeproject.org/files/ENCFF110UGI/@@download/ENCFF110UGI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/28/0d591c8b-9f2e-4f45-b986-20adc0e7c3c8/ENCFF110UGI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF672SZH fastq fastq reads ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_2 101 paired-ended 2 /files/ENCFF110UGI/ 2186166652 Michael Snyder, Stanford cc619f5b709be18c93782e5474060068 SRA:SRR6213265 https://www.encodeproject.org/files/ENCFF672SZH/@@download/ENCFF672SZH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/28/9e6a5f5b-edc5-4670-848f-f318d4c606eb/ENCFF672SZH.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF525ZHS bam bam unfiltered alignments hg19 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1, 1_2 101 /files/ENCFF110UGI/, /files/ENCFF807MUK/, /files/ENCFF672SZH/, /files/ENCFF002EFL/, /files/ENCFF002EFM/ 9241494203 ENCODE Processing Pipeline 794a1144a963fd3f598d51fabc24bd90 https://www.encodeproject.org/files/ENCFF525ZHS/@@download/ENCFF525ZHS.bam released s3://encode-public/2017/03/03/add62fa7-9e34-4654-a2d8-d04a152edec9/ENCFF525ZHS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF980CFV bam bam alignments hg19 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1, 1_2 101 /files/ENCFF110UGI/, /files/ENCFF807MUK/, /files/ENCFF672SZH/, /files/ENCFF002EFL/, /files/ENCFF002EFM/ 6952694477 ENCODE Processing Pipeline acd205078da605c13925e22fdad02e3e https://www.encodeproject.org/files/ENCFF980CFV/@@download/ENCFF980CFV.bam released s3://encode-public/2017/03/03/990e32d7-f4ec-4045-8d11-ce0c6ad99e37/ENCFF980CFV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF332AFO bam bam unfiltered alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1, 1_2 101 /files/ENCFF110UGI/, /files/ENCFF643CGH/, /files/ENCFF672SZH/, /files/ENCFF002EFL/, /files/ENCFF002EFM/ 9252406000 ENCODE Processing Pipeline 20d63462e3a2a3c62a7896d54acc4098 https://www.encodeproject.org/files/ENCFF332AFO/@@download/ENCFF332AFO.bam released s3://encode-public/2017/03/08/325c64c9-1545-4a16-937e-cec845be7549/ENCFF332AFO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF396QTX bam bam alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1, 1_2 101 /files/ENCFF110UGI/, /files/ENCFF643CGH/, /files/ENCFF672SZH/, /files/ENCFF002EFL/, /files/ENCFF002EFM/ 6961388850 ENCODE Processing Pipeline f26b2c86240a68f2ed7d8218c51d4922 https://www.encodeproject.org/files/ENCFF396QTX/@@download/ENCFF396QTX.bam released s3://encode-public/2017/03/08/6b32db16-92bf-46e8-8704-db2a871bbbd0/ENCFF396QTX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF023QNX bam bam unfiltered alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1, 1_2 100 /files/ENCFF002EFM/, /files/ENCFF110UGI/, /files/ENCFF002EFL/, /files/ENCFF110MCL/, /files/ENCFF672SZH/ 9179786842 ENCODE Processing Pipeline c44504bc78ab75c571915366300a800f https://www.encodeproject.org/files/ENCFF023QNX/@@download/ENCFF023QNX.bam released s3://encode-public/2020/06/13/4de37887-9809-4c6f-ab56-d2b254554cee/ENCFF023QNX.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF079JPN bam bam unfiltered alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFR/, /files/ENCFF110MCL/, /files/ENCFF002EFP/ 5759863027 ENCODE Processing Pipeline beb54311311a5a9d9ec9d1bf89f5dbd3 https://www.encodeproject.org/files/ENCFF079JPN/@@download/ENCFF079JPN.bam released s3://encode-public/2020/06/13/72c70618-5086-42a8-897d-69e3ea0636cb/ENCFF079JPN.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF490PSX bam bam alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFR/, /files/ENCFF110MCL/, /files/ENCFF002EFP/ 4533299742 ENCODE Processing Pipeline 0cef533a0ad19797e5101eadf014c656 https://www.encodeproject.org/files/ENCFF490PSX/@@download/ENCFF490PSX.bam released s3://encode-public/2020/06/13/9e7011a6-2f02-48bd-930b-9da5899c6e17/ENCFF490PSX.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF613HJS bam bam alignments GRCh38 ENCSR634PYN Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1, 1_2 100 /files/ENCFF002EFM/, /files/ENCFF110UGI/, /files/ENCFF002EFL/, /files/ENCFF110MCL/, /files/ENCFF672SZH/ 6695992410 ENCODE Processing Pipeline bbfd4aef01974ff0ba85f04de9a7d2b4 https://www.encodeproject.org/files/ENCFF613HJS/@@download/ENCFF613HJS.bam released s3://encode-public/2020/06/13/d25ac444-03b5-46eb-a78a-b201be880ad8/ENCFF613HJS.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF218RAX fastq fastq reads ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 1511517064 Xiang-Dong Fu, UCSD e4d1c4070b8857f64f2542d7fd4097e6 SRA:SRR10049534 https://www.encodeproject.org/files/ENCFF218RAX/@@download/ENCFF218RAX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/c8561e58-21f5-491a-8f5f-268276f5566d/ENCFF218RAX.fastq.gz low read length ENCFF743NIF fastq fastq reads ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1399355170 Xiang-Dong Fu, UCSD 02980412c0fd9cf8ad537e6002775a70 SRA:SRR10049533 https://www.encodeproject.org/files/ENCFF743NIF/@@download/ENCFF743NIF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/4d430b86-1f77-48c6-ab46-d78f6f09edb6/ENCFF743NIF.fastq.gz low read length ENCFF568YOD bam bam alignments hg19 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF218RAX/ 1652117623 ENCODE Processing Pipeline 59300217b400340adbdf6a825bb6c9dc https://www.encodeproject.org/files/ENCFF568YOD/@@download/ENCFF568YOD.bam released s3://encode-public/2015/11/12/9be6fc25-d779-4e6d-9b74-632b6fdfde6b/ENCFF568YOD.bam ENCODE3 hg19 archived low read length ENCFF083RZJ bam bam alignments hg19 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF743NIF/, /files/ENCFF807MUK/ 1524822975 ENCODE Processing Pipeline 7bfda6ab8d28e3661d862d35209cdd7d https://www.encodeproject.org/files/ENCFF083RZJ/@@download/ENCFF083RZJ.bam released s3://encode-public/2015/11/12/a664abb7-5906-451b-8193-bec1f6e25e7e/ENCFF083RZJ.bam ENCODE3 hg19 archived low read length ENCFF978ZZB bam bam unfiltered alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF743NIF/, /files/ENCFF643CGH/ 1979135222 ENCODE Processing Pipeline af60b517e0f9ffa234437898fffb6dc0 https://www.encodeproject.org/files/ENCFF978ZZB/@@download/ENCFF978ZZB.bam released s3://encode-public/2016/05/06/7c182c6b-7ec4-4832-bb8b-eba0cd23120a/ENCFF978ZZB.bam ENCODE3 GRCh38 archived low read length ENCFF271JZR bam bam unfiltered alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF218RAX/ 2161231395 ENCODE Processing Pipeline f53bde30cb8a8b9d4b5dab0e309e22c3 https://www.encodeproject.org/files/ENCFF271JZR/@@download/ENCFF271JZR.bam released s3://encode-public/2016/05/06/16e0e996-70c8-4222-871b-1f4d07b3b9cb/ENCFF271JZR.bam ENCODE3 GRCh38 archived low read length ENCFF736TJP bam bam alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF218RAX/ 1650896950 ENCODE Processing Pipeline 74c23a560f3c7ec810c59334f06bf8f3 https://www.encodeproject.org/files/ENCFF736TJP/@@download/ENCFF736TJP.bam released s3://encode-public/2016/05/06/a75fd9c2-4259-4537-be8d-7407d381b939/ENCFF736TJP.bam ENCODE3 GRCh38 archived low read length ENCFF842ALK bam bam alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF743NIF/, /files/ENCFF643CGH/ 1523684489 ENCODE Processing Pipeline dffb75980378c03027482dc21e9de60c https://www.encodeproject.org/files/ENCFF842ALK/@@download/ENCFF842ALK.bam released s3://encode-public/2016/05/06/8952aa42-a35e-4737-b327-073af2a6ad01/ENCFF842ALK.bam ENCODE3 GRCh38 archived low read length ENCFF558AOU bam bam unfiltered alignments hg19 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF218RAX/ 2152452443 ENCODE Processing Pipeline 2b15a1b93c282482e3b7e720e4782913 https://www.encodeproject.org/files/ENCFF558AOU/@@download/ENCFF558AOU.bam released s3://encode-public/2018/01/12/a1897fc4-228c-484d-a577-36fb142781ed/ENCFF558AOU.bam ENCODE3 hg19 archived low read length ENCFF326HAL bam bam unfiltered alignments hg19 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF743NIF/, /files/ENCFF807MUK/ 1971024490 ENCODE Processing Pipeline 15589286927799cb5596273ce36f6096 https://www.encodeproject.org/files/ENCFF326HAL/@@download/ENCFF326HAL.bam released s3://encode-public/2018/01/12/af994357-2970-4ea0-ad04-28626e766d70/ENCFF326HAL.bam ENCODE3 hg19 archived low read length ENCFF475UDH bam bam alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF218RAX/ 1697868868 ENCODE Processing Pipeline 04f155a7db2da460486d7dfc2e0d6365 https://www.encodeproject.org/files/ENCFF475UDH/@@download/ENCFF475UDH.bam released s3://encode-public/2020/10/27/bb01505a-0a6c-429b-8f3c-637f47d9eda9/ENCFF475UDH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF461RWK bam bam unfiltered alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF218RAX/ 2136806898 ENCODE Processing Pipeline 3548c24dc093b37466802d6a9cc81a6f https://www.encodeproject.org/files/ENCFF461RWK/@@download/ENCFF461RWK.bam released s3://encode-public/2020/10/27/2111c806-8d0f-4ade-b09d-8fe23822cd8a/ENCFF461RWK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF152IKD bam bam unfiltered alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF743NIF/ 1957040274 ENCODE Processing Pipeline 035ab3b39afeb2015d162df88b6e94c7 https://www.encodeproject.org/files/ENCFF152IKD/@@download/ENCFF152IKD.bam released s3://encode-public/2020/10/27/740f499c-94e6-4e5f-9caa-249f4ddedc14/ENCFF152IKD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF770PNC bam bam alignments GRCh38 ENCSR254UDV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF743NIF/ 1558803562 ENCODE Processing Pipeline e4466a4baef61ecf2731b292bcb77244 https://www.encodeproject.org/files/ENCFF770PNC/@@download/ENCFF770PNC.bam released s3://encode-public/2020/10/27/31c09a89-53ed-4b3f-a3f8-8071b0bf696a/ENCFF770PNC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF926OKC bam bam unfiltered alignments hg19 ENCSR511PAE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 7 7_1 50 /files/ENCFF752XCV/, /files/ENCFF807MUK/ 3597584158 ENCODE Processing Pipeline 3d215fd025883ef52324c41a04c50e56 https://www.encodeproject.org/files/ENCFF926OKC/@@download/ENCFF926OKC.bam released s3://encode-public/2018/02/21/f97bb35d-9530-425c-abc7-eae61d8a6ddd/ENCFF926OKC.bam ENCODE3 hg19 archived ENCFF752XCV fastq fastq reads ENCSR511PAE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 7 7_1 50 single-ended 3435809876 Richard Myers, HAIB 1cc31c50e9888a0f3694b219b6c7b6ec SRA:SRR5338868 https://www.encodeproject.org/files/ENCFF752XCV/@@download/ENCFF752XCV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/2345a57c-76e3-47a7-b17f-a57852441454/ENCFF752XCV.fastq.gz ENCFF423QHQ bam bam alignments hg19 ENCSR511PAE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 7 7_1 50 /files/ENCFF752XCV/, /files/ENCFF807MUK/ 2710860611 ENCODE Processing Pipeline 696c3f924589e02088567b6266b761bf https://www.encodeproject.org/files/ENCFF423QHQ/@@download/ENCFF423QHQ.bam released s3://encode-public/2015/10/30/af880fd5-5c88-4d98-9480-27def1f12ca0/ENCFF423QHQ.bam ENCODE3 hg19 archived ENCFF719QWF bam bam unfiltered alignments GRCh38 ENCSR511PAE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 7 7_1 50 /files/ENCFF752XCV/, /files/ENCFF643CGH/ 3614259581 ENCODE Processing Pipeline 1cb5a023a81a7b226704e38bce38cf98 https://www.encodeproject.org/files/ENCFF719QWF/@@download/ENCFF719QWF.bam released s3://encode-public/2016/05/06/2d01761f-d704-470a-8177-39d60fb10dec/ENCFF719QWF.bam ENCODE3 GRCh38 archived ENCFF018PFX bam bam alignments GRCh38 ENCSR511PAE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 7 7_1 50 /files/ENCFF752XCV/, /files/ENCFF643CGH/ 2710829827 ENCODE Processing Pipeline 5905a7efbf740b1eef06f39ec1e05a72 https://www.encodeproject.org/files/ENCFF018PFX/@@download/ENCFF018PFX.bam released s3://encode-public/2016/05/06/193c9d90-b4f5-454d-ae2a-35f3ce7c223d/ENCFF018PFX.bam ENCODE3 GRCh38 archived ENCFF154RFK bam bam alignments GRCh38 ENCSR511PAE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 7 7_1 50 /files/ENCFF110MCL/, /files/ENCFF752XCV/ 2810889318 ENCODE Processing Pipeline 3afcac3d61b0258882289dbafcdf592c https://www.encodeproject.org/files/ENCFF154RFK/@@download/ENCFF154RFK.bam released s3://encode-public/2020/06/06/01d2348d-528a-4d94-a45e-96ea7d72a6e4/ENCFF154RFK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF821NHU bam bam unfiltered alignments GRCh38 ENCSR511PAE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 7 7_1 50 /files/ENCFF110MCL/, /files/ENCFF752XCV/ 3579673921 ENCODE Processing Pipeline 36f2ec2d91d83ef4bbef49b708072dd3 https://www.encodeproject.org/files/ENCFF821NHU/@@download/ENCFF821NHU.bam released s3://encode-public/2020/06/06/c1633921-a320-47ed-a6cb-7b66c49491f7/ENCFF821NHU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF418RCM bam bam unfiltered alignments hg19 ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 /files/ENCFF807MUK/, /files/ENCFF381LXJ/, /files/ENCFF332HES/ 4366907209 ENCODE Processing Pipeline 365137f62b46f1a74c3715a15e39dcf1 https://www.encodeproject.org/files/ENCFF418RCM/@@download/ENCFF418RCM.bam released s3://encode-public/2018/02/22/ad0497df-cb84-49ac-8c71-3ebd665a3365/ENCFF418RCM.bam ENCODE3 hg19 archived poor library complexity, severe bottlenecking ENCFF381LXJ fastq fastq reads ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 single-ended 3428992322 Richard Myers, HAIB 600627dfeb41675414adc933541decaf SRA:SRR5339007 https://www.encodeproject.org/files/ENCFF381LXJ/@@download/ENCFF381LXJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/6b203138-6b3f-4d79-b220-08ad2cb4e66a/ENCFF381LXJ.fastq.gz poor library complexity, severe bottlenecking ENCFF332HES fastq fastq reads ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 single-ended 3428992322 Richard Myers, HAIB c20acfd051f932fa6fcacdadc5f3a1d1 SRA:SRR5339008 https://www.encodeproject.org/files/ENCFF332HES/@@download/ENCFF332HES.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/85860d99-aa0a-4291-8660-9046fd184f25/ENCFF332HES.fastq.gz poor library complexity, severe bottlenecking ENCFF853BBD bam bam alignments hg19 ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 /files/ENCFF807MUK/, /files/ENCFF381LXJ/, /files/ENCFF332HES/ 2711740148 ENCODE Processing Pipeline 6729e3f5e019a32899cc7f6527749998 https://www.encodeproject.org/files/ENCFF853BBD/@@download/ENCFF853BBD.bam released s3://encode-public/2016/03/03/06431199-00a1-4128-9922-6af556750826/ENCFF853BBD.bam ENCODE3 hg19 archived poor library complexity, severe bottlenecking ENCFF827FND bam bam unfiltered alignments GRCh38 ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 /files/ENCFF643CGH/, /files/ENCFF381LXJ/, /files/ENCFF332HES/ 4396596219 ENCODE Processing Pipeline 2ba05e7354cca5574543c35c4d7d8c4b https://www.encodeproject.org/files/ENCFF827FND/@@download/ENCFF827FND.bam released s3://encode-public/2016/05/06/b7904753-52f6-44a0-aef9-968cec1c417b/ENCFF827FND.bam ENCODE3 GRCh38 archived poor library complexity, severe bottlenecking ENCFF667XXT bam bam alignments GRCh38 ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 /files/ENCFF643CGH/, /files/ENCFF381LXJ/, /files/ENCFF332HES/ 2712108479 ENCODE Processing Pipeline 492c33b8a5e6147641c21def77718c31 https://www.encodeproject.org/files/ENCFF667XXT/@@download/ENCFF667XXT.bam released s3://encode-public/2016/05/06/97b66610-3be1-4a1e-aeb3-18ce66afb7cd/ENCFF667XXT.bam ENCODE3 GRCh38 archived poor library complexity, severe bottlenecking ENCFF875GGQ bam bam unfiltered alignments GRCh38 ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 /files/ENCFF332HES/, /files/ENCFF110MCL/, /files/ENCFF381LXJ/ 4027676432 ENCODE Processing Pipeline 7348831f85b1bc06c9e4df11cd6e6120 https://www.encodeproject.org/files/ENCFF875GGQ/@@download/ENCFF875GGQ.bam released s3://encode-public/2020/10/28/07a45860-00aa-45a5-89cd-7cbbb8ecbc48/ENCFF875GGQ.bam ENCODE4 v1.5.1 GRCh38 released poor library complexity, severe bottlenecking ENCFF847PZL bam bam alignments GRCh38 ENCSR610GTD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 6 6_1 50 /files/ENCFF332HES/, /files/ENCFF110MCL/, /files/ENCFF381LXJ/ 2819769687 ENCODE Processing Pipeline 6af1a7924344dd291e7521e829900001 https://www.encodeproject.org/files/ENCFF847PZL/@@download/ENCFF847PZL.bam released s3://encode-public/2020/10/28/891298b1-42f3-4830-8ad6-a5f484db6446/ENCFF847PZL.bam ENCODE4 v1.5.1 GRCh38 released poor library complexity, severe bottlenecking ENCFF582GRS fastq fastq reads ENCSR794SVC Control ChIP-seq /worm-donors/ENCDO360AJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181676/'], '@type': ['Target', 'Item'], 'name': 'gmeb-2-celegans', 'label': 'gmeb-2', '@id': '/targets/gmeb-2-celegans/', 'title': 'gmeb-2 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '55cd9fb5-4a8f-48ec-84cf-05005c554115', 'status': 'released'} ce11 X 15855521 15889553 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1468225296 Kevin White, UChicago 6e65764f63d01e9371b84e1575d3ffdd https://www.encodeproject.org/files/ENCFF582GRS/@@download/ENCFF582GRS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/4065a919-3469-4743-9b09-29e0c0928e0d/ENCFF582GRS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF013TMV bam bam alignments ce10 ENCSR794SVC Control ChIP-seq /worm-donors/ENCDO360AJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181676/'], '@type': ['Target', 'Item'], 'name': 'gmeb-2-celegans', 'label': 'gmeb-2', '@id': '/targets/gmeb-2-celegans/', 'title': 'gmeb-2 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '55cd9fb5-4a8f-48ec-84cf-05005c554115', 'status': 'released'} ce11 X 15855521 15889553 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF582GRS/, /files/ENCFF987UMF/ 1914725605 Kevin White, UChicago 4d152e011f80216c36fba35320e9c635 https://www.encodeproject.org/files/ENCFF013TMV/@@download/ENCFF013TMV.bam released s3://encode-public/2016/10/04/b4d84e21-82e0-4d2e-82f1-d59b64f0a00f/ENCFF013TMV.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF950WEL bam bam alignments ce11 ENCSR794SVC Control ChIP-seq /worm-donors/ENCDO360AJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181676/'], '@type': ['Target', 'Item'], 'name': 'gmeb-2-celegans', 'label': 'gmeb-2', '@id': '/targets/gmeb-2-celegans/', 'title': 'gmeb-2 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '55cd9fb5-4a8f-48ec-84cf-05005c554115', 'status': 'released'} ce11 X 15855521 15889553 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF582GRS/, /files/ENCFF586MOL/ 1916317430 Kevin White, UChicago 7a0caa9b0f475c45de395ecceaa1015a https://www.encodeproject.org/files/ENCFF950WEL/@@download/ENCFF950WEL.bam released s3://encode-public/2016/10/05/064a7991-94dc-4156-8771-3567cc5488a0/ENCFF950WEL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF566WWU bigWig bigWig read-depth normalized signal ce10 ENCSR794SVC Control ChIP-seq /worm-donors/ENCDO360AJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181676/'], '@type': ['Target', 'Item'], 'name': 'gmeb-2-celegans', 'label': 'gmeb-2', '@id': '/targets/gmeb-2-celegans/', 'title': 'gmeb-2 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '55cd9fb5-4a8f-48ec-84cf-05005c554115', 'status': 'released'} ce11 X 15855521 15889553 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF013TMV/ 9971538 Kevin White, UChicago 4329585d19c5c740aa2e4d3474486dd6 https://www.encodeproject.org/files/ENCFF566WWU/@@download/ENCFF566WWU.bigWig released s3://encode-public/2016/10/06/8fa5a477-20e9-4d7c-8fcf-a8cd86d584b1/ENCFF566WWU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF154PCW bigWig bigWig signal of unique reads ce10 ENCSR794SVC Control ChIP-seq /worm-donors/ENCDO360AJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181676/'], '@type': ['Target', 'Item'], 'name': 'gmeb-2-celegans', 'label': 'gmeb-2', '@id': '/targets/gmeb-2-celegans/', 'title': 'gmeb-2 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '55cd9fb5-4a8f-48ec-84cf-05005c554115', 'status': 'released'} ce11 X 15855521 15889553 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF013TMV/ 9947313 Kevin White, UChicago 1652b95d43dad3139a0d751ab19e9321 https://www.encodeproject.org/files/ENCFF154PCW/@@download/ENCFF154PCW.bigWig released s3://encode-public/2016/10/06/afcee57d-410d-4fd1-8f18-adde7314cdaf/ENCFF154PCW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF531YKV bigWig bigWig signal of unique reads ce11 ENCSR794SVC Control ChIP-seq /worm-donors/ENCDO360AJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181676/'], '@type': ['Target', 'Item'], 'name': 'gmeb-2-celegans', 'label': 'gmeb-2', '@id': '/targets/gmeb-2-celegans/', 'title': 'gmeb-2 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '55cd9fb5-4a8f-48ec-84cf-05005c554115', 'status': 'released'} ce11 X 15855521 15889553 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF950WEL/ 9947310 Kevin White, UChicago 8348d319cc139b1d2f36c092ca858bc0 https://www.encodeproject.org/files/ENCFF531YKV/@@download/ENCFF531YKV.bigWig released s3://encode-public/2016/10/06/f129b475-e263-4d22-a58f-5708d60db717/ENCFF531YKV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF338SKM bigWig bigWig read-depth normalized signal ce11 ENCSR794SVC Control ChIP-seq /worm-donors/ENCDO360AJB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181676/'], '@type': ['Target', 'Item'], 'name': 'gmeb-2-celegans', 'label': 'gmeb-2', '@id': '/targets/gmeb-2-celegans/', 'title': 'gmeb-2 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '55cd9fb5-4a8f-48ec-84cf-05005c554115', 'status': 'released'} ce11 X 15855521 15889553 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF950WEL/ 9971537 Kevin White, UChicago 7614011f54151c56873c7ee27d9a83ec https://www.encodeproject.org/files/ENCFF338SKM/@@download/ENCFF338SKM.bigWig released s3://encode-public/2016/10/06/739b95e1-b2d3-4623-b3f4-273d805d47b6/ENCFF338SKM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF020XZL fastq fastq reads ENCSR101ZRY Control ChIP-seq /worm-donors/ENCDO028VSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174026/'], '@type': ['Target', 'Item'], 'name': 'fkh-8-celegans', 'label': 'fkh-8', '@id': '/targets/fkh-8-celegans/', 'title': 'fkh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31f2df09-9fc1-4551-aaaf-94f7d729c5c5', 'status': 'released'} ce11 II 6184650 6219736 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 467935588 Kevin White, UChicago 9c29355ba0076420bbec345aa841cb7a https://www.encodeproject.org/files/ENCFF020XZL/@@download/ENCFF020XZL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/491b0281-89e3-4cd5-aeaf-b5dbda9b2fd5/ENCFF020XZL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF619EEI bam bam alignments ce10 ENCSR101ZRY Control ChIP-seq /worm-donors/ENCDO028VSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174026/'], '@type': ['Target', 'Item'], 'name': 'fkh-8-celegans', 'label': 'fkh-8', '@id': '/targets/fkh-8-celegans/', 'title': 'fkh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31f2df09-9fc1-4551-aaaf-94f7d729c5c5', 'status': 'released'} ce11 II 6184650 6219736 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF020XZL/, /files/ENCFF987UMF/ 542678890 Kevin White, UChicago 4eaf0d5028ea7a29a349f66f2e500aa5 https://www.encodeproject.org/files/ENCFF619EEI/@@download/ENCFF619EEI.bam released s3://encode-public/2016/10/04/73288f46-efd5-43e7-9eaf-d51d747b5a7c/ENCFF619EEI.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF859HGB bam bam alignments ce11 ENCSR101ZRY Control ChIP-seq /worm-donors/ENCDO028VSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174026/'], '@type': ['Target', 'Item'], 'name': 'fkh-8-celegans', 'label': 'fkh-8', '@id': '/targets/fkh-8-celegans/', 'title': 'fkh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31f2df09-9fc1-4551-aaaf-94f7d729c5c5', 'status': 'released'} ce11 II 6184650 6219736 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF020XZL/, /files/ENCFF586MOL/ 543109480 Kevin White, UChicago 53110abf672f2d52a6f6845cc8a7fa32 https://www.encodeproject.org/files/ENCFF859HGB/@@download/ENCFF859HGB.bam released s3://encode-public/2016/10/05/c8e973bc-9325-490b-b23b-d6d0cb5ed6cf/ENCFF859HGB.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF897OIU bigWig bigWig read-depth normalized signal ce10 ENCSR101ZRY Control ChIP-seq /worm-donors/ENCDO028VSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174026/'], '@type': ['Target', 'Item'], 'name': 'fkh-8-celegans', 'label': 'fkh-8', '@id': '/targets/fkh-8-celegans/', 'title': 'fkh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31f2df09-9fc1-4551-aaaf-94f7d729c5c5', 'status': 'released'} ce11 II 6184650 6219736 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF619EEI/ 9986452 Kevin White, UChicago d0a01cbfc8ceb638a735ad0d46725fdb https://www.encodeproject.org/files/ENCFF897OIU/@@download/ENCFF897OIU.bigWig released s3://encode-public/2016/10/06/585bba5b-ac9d-4e51-8fd3-1f6fe2676c14/ENCFF897OIU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF002NTX bigWig bigWig signal of unique reads ce10 ENCSR101ZRY Control ChIP-seq /worm-donors/ENCDO028VSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174026/'], '@type': ['Target', 'Item'], 'name': 'fkh-8-celegans', 'label': 'fkh-8', '@id': '/targets/fkh-8-celegans/', 'title': 'fkh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31f2df09-9fc1-4551-aaaf-94f7d729c5c5', 'status': 'released'} ce11 II 6184650 6219736 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF619EEI/ 10054102 Kevin White, UChicago e68c280a0d619da69426014b65903438 https://www.encodeproject.org/files/ENCFF002NTX/@@download/ENCFF002NTX.bigWig released s3://encode-public/2016/10/06/6d474da4-e9e5-49e8-9e95-57e8ad98678a/ENCFF002NTX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF512GMU bigWig bigWig signal of unique reads ce11 ENCSR101ZRY Control ChIP-seq /worm-donors/ENCDO028VSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174026/'], '@type': ['Target', 'Item'], 'name': 'fkh-8-celegans', 'label': 'fkh-8', '@id': '/targets/fkh-8-celegans/', 'title': 'fkh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31f2df09-9fc1-4551-aaaf-94f7d729c5c5', 'status': 'released'} ce11 II 6184650 6219736 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF859HGB/ 10054106 Kevin White, UChicago 0b292ee47fe8518bf6e54021b8247da6 https://www.encodeproject.org/files/ENCFF512GMU/@@download/ENCFF512GMU.bigWig released s3://encode-public/2016/10/06/e73c2d8e-a749-49ac-82e3-2e045172569d/ENCFF512GMU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF895PNB bigWig bigWig read-depth normalized signal ce11 ENCSR101ZRY Control ChIP-seq /worm-donors/ENCDO028VSR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174026/'], '@type': ['Target', 'Item'], 'name': 'fkh-8-celegans', 'label': 'fkh-8', '@id': '/targets/fkh-8-celegans/', 'title': 'fkh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '31f2df09-9fc1-4551-aaaf-94f7d729c5c5', 'status': 'released'} ce11 II 6184650 6219736 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF859HGB/ 9986451 Kevin White, UChicago adbde45e0879e141d0fcce468b765ea7 https://www.encodeproject.org/files/ENCFF895PNB/@@download/ENCFF895PNB.bigWig released s3://encode-public/2016/10/06/21ec7881-98d5-479a-a31c-0a7dca8b7741/ENCFF895PNB.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF721VRS fastq fastq reads ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 128371039 Michael Snyder, Stanford a684b59610f5fa7134b349555d7c087c https://www.encodeproject.org/files/ENCFF721VRS/@@download/ENCFF721VRS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b17bceab-1303-419f-850b-2f849a16e8b5/ENCFF721VRS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF866EKQ fastq fastq reads ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 101565943 Michael Snyder, Stanford bffbe85d868fdec1c6ff142cc2813e99 https://www.encodeproject.org/files/ENCFF866EKQ/@@download/ENCFF866EKQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1c690797-40d9-4f8a-bd43-f74ec72c97e0/ENCFF866EKQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF255ZTA bam bam alignments ce10 ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF866EKQ/, /files/ENCFF721VRS/, /files/ENCFF987UMF/ 280233429 Kevin White, UChicago aa02bc4ac8111208fc6f75137f8f4914 https://www.encodeproject.org/files/ENCFF255ZTA/@@download/ENCFF255ZTA.bam released s3://encode-public/2016/10/18/03c85ca3-6829-4b4d-9b44-f150171713cb/ENCFF255ZTA.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF347BGY bam bam alignments ce11 ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF866EKQ/, /files/ENCFF721VRS/, /files/ENCFF586MOL/ 280483536 Kevin White, UChicago 800ea424fdeb889c56ad71bdf90a837c https://www.encodeproject.org/files/ENCFF347BGY/@@download/ENCFF347BGY.bam released s3://encode-public/2016/10/18/b06bcd04-ec26-4c85-9b9d-36a885ed7082/ENCFF347BGY.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF647ZRS bigWig bigWig read-depth normalized signal ce10 ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF255ZTA/ 10007051 Kevin White, UChicago f8a3406abb3890dfe699552486a65d86 https://www.encodeproject.org/files/ENCFF647ZRS/@@download/ENCFF647ZRS.bigWig released s3://encode-public/2016/10/20/b6c26f39-7ff9-464b-99ac-5882c75c7b6b/ENCFF647ZRS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF099GNH bigWig bigWig signal of unique reads ce10 ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF255ZTA/ 9991585 Kevin White, UChicago fffabf05699c00253daec6b0fe59b990 https://www.encodeproject.org/files/ENCFF099GNH/@@download/ENCFF099GNH.bigWig released s3://encode-public/2016/10/20/4eed3e9a-c402-4036-bdfd-eed3fe94f817/ENCFF099GNH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF764KNZ bigWig bigWig read-depth normalized signal ce11 ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF347BGY/ 9997929 Kevin White, UChicago 8117013de6d1aea42f5f3aff286bfb3a https://www.encodeproject.org/files/ENCFF764KNZ/@@download/ENCFF764KNZ.bigWig released s3://encode-public/2016/10/20/715c3319-eda1-4787-b9e1-ebb253fb5fc6/ENCFF764KNZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF450TLJ bigWig bigWig signal of unique reads ce11 ENCSR364HHR Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF347BGY/ 9984015 Kevin White, UChicago e6149f4589f02a31fccc62b7038ad88e https://www.encodeproject.org/files/ENCFF450TLJ/@@download/ENCFF450TLJ.bigWig released s3://encode-public/2016/10/20/04049ca3-b954-4a85-8d67-df8bb41aa4aa/ENCFF450TLJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF388PFA bam bam unfiltered alignments hg19 ENCSR436QMA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF166VXQ/ 1798503220 ENCODE Processing Pipeline 2e707948f525d3209e39e0df964d8a42 https://www.encodeproject.org/files/ENCFF388PFA/@@download/ENCFF388PFA.bam released s3://encode-public/2018/02/22/164ea99f-f5c7-41be-9c33-501f967e927d/ENCFF388PFA.bam ENCODE3 hg19 archived ENCFF166VXQ fastq fastq reads ENCSR436QMA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 single-ended 1661160012 Richard Myers, HAIB 070d9891ff4d3f7cd68e8e78b45a139f SRA:SRR8660379 https://www.encodeproject.org/files/ENCFF166VXQ/@@download/ENCFF166VXQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/04/06/35f2ee08-bb77-43b0-a09f-4d7068ab9ee2/ENCFF166VXQ.fastq.gz ENCFF768JXC bam bam alignments hg19 ENCSR436QMA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF166VXQ/ 1349439894 ENCODE Processing Pipeline 856369e2186e14f2b0d816657510c646 https://www.encodeproject.org/files/ENCFF768JXC/@@download/ENCFF768JXC.bam released s3://encode-public/2015/11/17/46483e05-72af-4446-b9db-8ddbe3cc754a/ENCFF768JXC.bam ENCODE3 hg19 archived ENCFF082GGD bam bam unfiltered alignments GRCh38 ENCSR436QMA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF166VXQ/ 1800126169 ENCODE Processing Pipeline 45cca594212754610e5ac6f8c8dc295c https://www.encodeproject.org/files/ENCFF082GGD/@@download/ENCFF082GGD.bam released s3://encode-public/2016/05/06/5a743c15-512d-4dc7-bf4f-f1795d7f4b06/ENCFF082GGD.bam ENCODE3 GRCh38 archived ENCFF145UTL bam bam alignments GRCh38 ENCSR436QMA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF166VXQ/ 1355936648 ENCODE Processing Pipeline 350837e026acdbb9a5123d81ad496ebc https://www.encodeproject.org/files/ENCFF145UTL/@@download/ENCFF145UTL.bam released s3://encode-public/2016/05/06/7a0e7c6c-51b0-4c8b-a25d-8fd3efd21c00/ENCFF145UTL.bam ENCODE3 GRCh38 archived ENCFF455IGQ bam bam unfiltered alignments GRCh38 ENCSR436QMA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF166VXQ/ 1780202637 ENCODE Processing Pipeline 7f38d581d28eb48061b921d6494a4261 https://www.encodeproject.org/files/ENCFF455IGQ/@@download/ENCFF455IGQ.bam released s3://encode-public/2020/11/05/d2fd95a1-567b-4047-a39d-e8d2e23fa1e3/ENCFF455IGQ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF307HMW bam bam alignments GRCh38 ENCSR436QMA Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF166VXQ/ 1436620494 ENCODE Processing Pipeline 0de4000195a3859c33e835a0d38468f4 https://www.encodeproject.org/files/ENCFF307HMW/@@download/ENCFF307HMW.bam released s3://encode-public/2020/11/05/55ff77e6-2cff-40e4-a7dd-8872811843f8/ENCFF307HMW.bam ENCODE4 v1.6.1 GRCh38 released ENCFF813OKC fastq fastq reads ENCSR911MXZ Control ChIP-seq /fly-donors/ENCDO970TRM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39418/'], '@type': ['Target', 'Item'], 'name': 'toe-dmelanogaster', 'label': 'toe', '@id': '/targets/toe-dmelanogaster/', 'title': 'toe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b86b329-f0c3-4dd9-a99d-4801b82beab6', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 666986142 Kevin White, UChicago 96e682022e2bfc66e466dac1eb3d32f8 https://www.encodeproject.org/files/ENCFF813OKC/@@download/ENCFF813OKC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/ae06effb-4511-42f1-a37b-a899f6eaa7ae/ENCFF813OKC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF887XIW bam bam alignments dm3 ENCSR911MXZ Control ChIP-seq /fly-donors/ENCDO970TRM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39418/'], '@type': ['Target', 'Item'], 'name': 'toe-dmelanogaster', 'label': 'toe', '@id': '/targets/toe-dmelanogaster/', 'title': 'toe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b86b329-f0c3-4dd9-a99d-4801b82beab6', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF813OKC/ 967661602 Kevin White, UChicago a1aa5a85bb306cf0b3c6dfa9fa090164 https://www.encodeproject.org/files/ENCFF887XIW/@@download/ENCFF887XIW.bam released s3://encode-public/2015/08/03/69074962-99d3-415d-bce3-a4b9505a711d/ENCFF887XIW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF006FXO bigWig bigWig read-depth normalized signal dm3 ENCSR911MXZ Control ChIP-seq /fly-donors/ENCDO970TRM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39418/'], '@type': ['Target', 'Item'], 'name': 'toe-dmelanogaster', 'label': 'toe', '@id': '/targets/toe-dmelanogaster/', 'title': 'toe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b86b329-f0c3-4dd9-a99d-4801b82beab6', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF887XIW/ 15337800 Kevin White, UChicago 95a80566c06213f32276679963b1c430 https://www.encodeproject.org/files/ENCFF248BHE/@@download/ENCFF248BHE.bigWig released s3://encode-public/2015/10/06/2f9e9dc8-bc26-41b2-aaf6-7d0dd0bcdd90/ENCFF248BHE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF052KNA bam bam alignments dm6 ENCSR911MXZ Control ChIP-seq /fly-donors/ENCDO970TRM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39418/'], '@type': ['Target', 'Item'], 'name': 'toe-dmelanogaster', 'label': 'toe', '@id': '/targets/toe-dmelanogaster/', 'title': 'toe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b86b329-f0c3-4dd9-a99d-4801b82beab6', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF813OKC/ 960999575 Kevin White, UChicago 5c378b267b6a39976075ff85e8757aff https://www.encodeproject.org/files/ENCFF052KNA/@@download/ENCFF052KNA.bam released s3://encode-public/2016/04/22/b6521e1d-712b-466d-b028-452aa3c7c773/ENCFF052KNA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF848JKD bigWig bigWig read-depth normalized signal dm6 ENCSR911MXZ Control ChIP-seq /fly-donors/ENCDO970TRM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39418/'], '@type': ['Target', 'Item'], 'name': 'toe-dmelanogaster', 'label': 'toe', '@id': '/targets/toe-dmelanogaster/', 'title': 'toe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b86b329-f0c3-4dd9-a99d-4801b82beab6', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF052KNA/ 17446660 Kevin White, UChicago f1b86b17506dbeaec25f709760b42f6c https://www.encodeproject.org/files/ENCFF848JKD/@@download/ENCFF848JKD.bigWig released s3://encode-public/2016/06/21/8d92d403-d492-4224-840b-c3127d1389fd/ENCFF848JKD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF269RFD bigWig bigWig signal of unique reads dm6 ENCSR911MXZ Control ChIP-seq /fly-donors/ENCDO970TRM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39418/'], '@type': ['Target', 'Item'], 'name': 'toe-dmelanogaster', 'label': 'toe', '@id': '/targets/toe-dmelanogaster/', 'title': 'toe (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0b86b329-f0c3-4dd9-a99d-4801b82beab6', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF052KNA/ 17441732 Kevin White, UChicago 25067ce6df7fa7eae35e7f88756b0a18 https://www.encodeproject.org/files/ENCFF269RFD/@@download/ENCFF269RFD.bigWig released s3://encode-public/2016/06/21/f692aac1-3843-452b-ba7c-a3810b214575/ENCFF269RFD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF771NEW bam bam redacted unfiltered alignments GRCh38 ENCSR563EFJ Control ChIP-seq /human-donors/ENCDO967GTN/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF891ILZ/ 257632433 ENCODE Processing Pipeline df29ab23ad9caec7fd52922eb240d20f https://www.encodeproject.org/files/ENCFF771NEW/@@download/ENCFF771NEW.bam released s3://encode-public/2017/11/09/b75935fd-293f-4d5e-8731-e2b816fd7325/ENCFF771NEW.bam ENCODE3 GRCh38 archived low read depth ENCFF353QZC bam bam redacted alignments GRCh38 ENCSR563EFJ Control ChIP-seq /human-donors/ENCDO967GTN/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF891ILZ/ 208686945 ENCODE Processing Pipeline 1f0777d80ff265ac656d42ce8501e6fe https://www.encodeproject.org/files/ENCFF353QZC/@@download/ENCFF353QZC.bam released s3://encode-public/2017/11/09/28a4b628-417d-4e6f-bae2-c1121697a841/ENCFF353QZC.bam ENCODE3 GRCh38 archived low read depth ENCFF521GFR bam bam redacted unfiltered alignments hg19 ENCSR563EFJ Control ChIP-seq /human-donors/ENCDO967GTN/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF891ILZ/ 255319249 ENCODE Processing Pipeline b36a1d8a9b18eb18a9ad85d4868fd63e https://www.encodeproject.org/files/ENCFF521GFR/@@download/ENCFF521GFR.bam released s3://encode-public/2018/01/20/6967bc22-443f-440f-a6e0-40549def783d/ENCFF521GFR.bam ENCODE3 hg19 archived low read depth ENCFF819JCV bam bam redacted alignments hg19 ENCSR563EFJ Control ChIP-seq /human-donors/ENCDO967GTN/ NTR:0003079 fibroblast of breast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF891ILZ/ 208629554 ENCODE Processing Pipeline afc2df29cd0b14d2ceb37697d9f4e70a 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3c1d98c6bef446a0a91e4f4c9f3b1a9b https://www.encodeproject.org/files/ENCFF048VZV/@@download/ENCFF048VZV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/be47e9c4-a9e2-4bba-ae5e-4659924ce47d/ENCFF048VZV.fastq.gz mixed run types ENCFF865TXE fastq fastq reads ENCSR922FLS Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0005723 GM23248 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 76 paired-ended 2 /files/ENCFF105BSH/ 1114386020 Bradley Bernstein, Broad 915954217e6cb31dc3b787055964575d https://www.encodeproject.org/files/ENCFF865TXE/@@download/ENCFF865TXE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/fba3d7b3-3e49-4268-ad6e-d5059395ce91/ENCFF865TXE.fastq.gz mixed run types ENCFF377FRL fastq fastq reads ENCSR922FLS Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0005723 GM23248 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF751CCF/ 1081683162 Bradley Bernstein, Broad 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1121397855 Richard Myers, HAIB 26012afc070bd4b389ae4ec17751ca1d SRA:SRR5331459 https://www.encodeproject.org/files/ENCFF192IAC/@@download/ENCFF192IAC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/09/27/7afd771d-0e4b-4c71-88ef-e7eb5efb42cf/ENCFF192IAC.fastq.gz low read depth ENCFF444PGT bam bam unfiltered alignments GRCh38 ENCSR237VSG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF192IAC/ 1219766616 ENCODE Processing Pipeline 29bf5da3f1684bb4f17715da42a77997 https://www.encodeproject.org/files/ENCFF444PGT/@@download/ENCFF444PGT.bam released s3://encode-public/2016/10/26/6c923f55-51c6-40b4-adce-9992331b7f24/ENCFF444PGT.bam ENCODE3 GRCh38 archived low read depth ENCFF991WDT bam bam alignments hg19 ENCSR237VSG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 10 10_1 50 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10_1 50 /files/ENCFF643CGH/, /files/ENCFF192IAC/ 920996802 ENCODE Processing Pipeline b8c98c426705a36bb891ae983889a395 https://www.encodeproject.org/files/ENCFF423BBH/@@download/ENCFF423BBH.bam released s3://encode-public/2016/10/26/9dea372a-c235-4cbb-ad7d-bbb34555f7ec/ENCFF423BBH.bam ENCODE3 GRCh38 archived low read depth ENCFF162RQY bam bam unfiltered alignments GRCh38 ENCSR237VSG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF192IAC/ 1207146685 ENCODE Processing Pipeline a999baf2d1a677a63c2ea3e716be8275 https://www.encodeproject.org/files/ENCFF162RQY/@@download/ENCFF162RQY.bam released s3://encode-public/2020/06/06/6d0f067f-a798-4513-b565-7e9416a2a890/ENCFF162RQY.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF612NNB bam bam alignments GRCh38 ENCSR237VSG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF192IAC/ 979382134 ENCODE Processing Pipeline 37b7ebfd8c7175eacc01692b084c9a2c https://www.encodeproject.org/files/ENCFF612NNB/@@download/ENCFF612NNB.bam released s3://encode-public/2020/06/06/b273cede-b3a2-491b-b2e0-976e7d7bb0e4/ENCFF612NNB.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF366VHR fastq fastq reads ENCSR480EZU Control ChIP-seq /fly-donors/ENCDO842XBV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36171/'], '@type': ['Target', 'Item'], 'name': 'shn-dmelanogaster', 'label': 'shn', '@id': '/targets/shn-dmelanogaster/', 'title': 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melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36171/'], '@type': ['Target', 'Item'], 'name': 'shn-dmelanogaster', 'label': 'shn', '@id': '/targets/shn-dmelanogaster/', 'title': 'shn (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3d575e6a-69df-49e1-b91c-83d4a5757a5d', 'status': 'released'} dm3 2R 7022924 7115364 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF366VHR/ 906332829 Kevin White, UChicago ec15e7c8351544fdfed02a6cc699287a https://www.encodeproject.org/files/ENCFF187IPL/@@download/ENCFF187IPL.bam released s3://encode-public/2015/08/03/4dc9ec90-17b2-4e56-b9dd-16fda6801792/ENCFF187IPL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF799ZGP bigWig bigWig read-depth normalized signal dm3 ENCSR480EZU Control ChIP-seq /fly-donors/ENCDO842XBV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36171/'], '@type': ['Target', 'Item'], 'name': 'shn-dmelanogaster', 'label': 'shn', '@id': '/targets/shn-dmelanogaster/', 'title': 'shn (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3d575e6a-69df-49e1-b91c-83d4a5757a5d', 'status': 'released'} dm3 2R 7022924 7115364 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF187IPL/ 15366236 Kevin White, UChicago 6cf8a45a730363386bc9ce1281dfbb9f https://www.encodeproject.org/files/ENCFF799ZGP/@@download/ENCFF799ZGP.bigWig released s3://encode-public/2015/10/06/554e0707-89ce-4d9e-b506-dfe9d0535ab2/ENCFF799ZGP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF514AMH bigWig bigWig signal of unique reads dm3 ENCSR480EZU Control ChIP-seq /fly-donors/ENCDO842XBV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36171/'], '@type': ['Target', 'Item'], 'name': 'shn-dmelanogaster', 'label': 'shn', '@id': '/targets/shn-dmelanogaster/', 'title': 'shn (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3d575e6a-69df-49e1-b91c-83d4a5757a5d', 'status': 'released'} dm3 2R 7022924 7115364 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF187IPL/ 15350115 Kevin White, UChicago 6b0392e4113b6f65d2da1cf5bcfb8d90 https://www.encodeproject.org/files/ENCFF514AMH/@@download/ENCFF514AMH.bigWig released s3://encode-public/2015/10/06/98746398-ba52-4f0d-a1eb-470681a348c8/ENCFF514AMH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF021PLH bam bam alignments dm6 ENCSR480EZU Control ChIP-seq /fly-donors/ENCDO842XBV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36171/'], '@type': ['Target', 'Item'], 'name': 'shn-dmelanogaster', 'label': 'shn', '@id': '/targets/shn-dmelanogaster/', 'title': 'shn (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3d575e6a-69df-49e1-b91c-83d4a5757a5d', 'status': 'released'} dm3 2R 7022924 7115364 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF366VHR/ 903190827 Kevin White, UChicago de6bd3d456653fb3aec8aaf88dedef92 https://www.encodeproject.org/files/ENCFF021PLH/@@download/ENCFF021PLH.bam released s3://encode-public/2016/04/22/b6b9ed36-a861-4cff-bed5-2dd1ae887ace/ENCFF021PLH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF720XEM bigWig bigWig signal of unique reads dm6 ENCSR480EZU Control ChIP-seq /fly-donors/ENCDO842XBV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36171/'], '@type': ['Target', 'Item'], 'name': 'shn-dmelanogaster', 'label': 'shn', '@id': '/targets/shn-dmelanogaster/', 'title': 'shn (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3d575e6a-69df-49e1-b91c-83d4a5757a5d', 'status': 'released'} dm3 2R 7022924 7115364 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF021PLH/ 17423711 Kevin White, UChicago d6ac6536bf67c15a2132dc55e27a6deb https://www.encodeproject.org/files/ENCFF720XEM/@@download/ENCFF720XEM.bigWig released s3://encode-public/2016/06/20/efb958e3-bedd-48c8-a7fb-21ed162ac3fd/ENCFF720XEM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF165XNB bigWig bigWig read-depth normalized signal dm6 ENCSR480EZU Control ChIP-seq /fly-donors/ENCDO842XBV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36171/'], '@type': ['Target', 'Item'], 'name': 'shn-dmelanogaster', 'label': 'shn', '@id': '/targets/shn-dmelanogaster/', 'title': 'shn (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3d575e6a-69df-49e1-b91c-83d4a5757a5d', 'status': 'released'} dm3 2R 7022924 7115364 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF021PLH/ 17455725 Kevin White, UChicago 2e74550d5973e3487cff7369acc1563f https://www.encodeproject.org/files/ENCFF165XNB/@@download/ENCFF165XNB.bigWig released s3://encode-public/2016/06/20/b0477454-0c71-4a48-9944-2a39b817f407/ENCFF165XNB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002APQ fastq fastq reads ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 1162981551 Bing Ren, UCSD bacf79c8ac126faf859637b330dbc45d SRA:SRR3651670 https://www.encodeproject.org/files/ENCFF002APQ/@@download/ENCFF002APQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/560fc18c-78a8-437e-8981-658d60b7610c/ENCFF002APQ.fastq.gz low read depth, low read length ENCFF002APT fastq fastq reads ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1038459312 Bing Ren, UCSD 6af38d1747c0679895f64296bef88237 SRA:SRR3651669 https://www.encodeproject.org/files/ENCFF002APT/@@download/ENCFF002APT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/3eb377a8-376b-4261-bbba-f5863c585eb7/ENCFF002APT.fastq.gz low read depth, low read length ENCFF730RGY bam bam unfiltered alignments mm10-minimal ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APQ/, /files/ENCFF806TVZ/ 1396193026 ENCODE Processing Pipeline eca2bcbe7125e6bd43827f9221a85b1a https://www.encodeproject.org/files/ENCFF730RGY/@@download/ENCFF730RGY.bam archived s3://encode-public/2015/02/09/38009011-94c1-4ac5-9c0b-0bdde2913626/ENCFF730RGY.bam low read depth, low read length ENCFF342JDR bam bam unfiltered alignments mm10-minimal ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002APT/ 1250816077 ENCODE Processing Pipeline c724439487be2c4d718f1f0ca9c4313f https://www.encodeproject.org/files/ENCFF342JDR/@@download/ENCFF342JDR.bam archived s3://encode-public/2015/02/09/b9a1ba04-2e24-4a97-8760-5c3c9b3b3dc1/ENCFF342JDR.bam low read depth, low read length ENCFF528CCC bam bam alignments mm10-minimal ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002APT/ 831181642 ENCODE Processing Pipeline b6f6fa1027722abaa34b22d216ca9978 https://www.encodeproject.org/files/ENCFF528CCC/@@download/ENCFF528CCC.bam archived s3://encode-public/2015/05/24/81778617-301f-43d4-89c8-c7e3ce7068df/ENCFF528CCC.bam low read depth, low read length ENCFF351THT bam bam alignments mm10-minimal ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APQ/, /files/ENCFF806TVZ/ 917733868 ENCODE Processing Pipeline be777d9b9c37fde0a4abc6ed4c97f0ff https://www.encodeproject.org/files/ENCFF351THT/@@download/ENCFF351THT.bam archived s3://encode-public/2015/05/24/c788d7bc-a69e-4aaa-b90b-8d807a3bafc9/ENCFF351THT.bam low read depth, low read length ENCFF204NLG bam bam unfiltered alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002APT/ 1252493784 ENCODE Processing Pipeline c680e67f0f389fcf5129e7657a4adaa5 https://www.encodeproject.org/files/ENCFF204NLG/@@download/ENCFF204NLG.bam released s3://encode-public/2016/10/03/bd478f02-80ac-444a-bd3c-4b63c37ebc64/ENCFF204NLG.bam ENCODE3 mm10 archived low read depth, low read length ENCFF730FKB bam bam unfiltered alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002APQ/ 1397782058 ENCODE Processing Pipeline 69dd633b8db1d8937b074a81f285121a https://www.encodeproject.org/files/ENCFF730FKB/@@download/ENCFF730FKB.bam released s3://encode-public/2016/10/03/3563c22b-544f-4943-8cea-bec39dbcf667/ENCFF730FKB.bam ENCODE3 mm10 archived low read depth, low read length ENCFF037YEE bam bam alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002APT/ 830908174 ENCODE Processing Pipeline 8bde96b44b642a03e4e624fc1ef1bafc https://www.encodeproject.org/files/ENCFF037YEE/@@download/ENCFF037YEE.bam released s3://encode-public/2016/10/03/f5cc500f-f5a0-47af-a4b2-cd66fd3bfd37/ENCFF037YEE.bam ENCODE3 mm10 archived low read depth, low read length ENCFF411XWG bam bam alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002APQ/ 917452662 ENCODE Processing Pipeline 6a6896a3d92f2a94bde133934c2247ec https://www.encodeproject.org/files/ENCFF411XWG/@@download/ENCFF411XWG.bam released s3://encode-public/2016/10/03/da085e48-b79f-4a42-9b51-3310e4a84551/ENCFF411XWG.bam ENCODE3 mm10 archived low read depth, low read length ENCFF213IPS bam bam unfiltered alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002APT/ 1217827852 ENCODE Processing Pipeline 0b53653563f7a6f975e908b93f5a3696 https://www.encodeproject.org/files/ENCFF213IPS/@@download/ENCFF213IPS.bam released s3://encode-public/2020/10/08/96d95b11-a1b1-4a18-8e02-80450d2e453b/ENCFF213IPS.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF121JQK bam bam unfiltered alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APQ/, /files/ENCFF309GLL/ 1359699359 ENCODE Processing Pipeline 9d15e0cbba2f52845463ba592e088508 https://www.encodeproject.org/files/ENCFF121JQK/@@download/ENCFF121JQK.bam released s3://encode-public/2020/10/08/391798ca-8ed7-4e25-8558-dc571be87e02/ENCFF121JQK.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF052GTB bam bam alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APQ/, /files/ENCFF309GLL/ 987378082 ENCODE Processing Pipeline 1abee8d73f440bfbdc04adf8acf8a844 https://www.encodeproject.org/files/ENCFF052GTB/@@download/ENCFF052GTB.bam released s3://encode-public/2020/10/08/64a821da-99aa-4b09-ba4b-65d436fd9c9a/ENCFF052GTB.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF027NEW bam bam alignments mm10 ENCSR244YQD Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002APT/ 894469129 ENCODE Processing Pipeline 32999d2f1625ecbfe53121becc23977f https://www.encodeproject.org/files/ENCFF027NEW/@@download/ENCFF027NEW.bam released s3://encode-public/2020/10/08/f7a19ab7-343d-4884-b5ba-64eb529eabfe/ENCFF027NEW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF727JKV fastq fastq reads ENCSR608LKO Control ChIP-seq /fly-donors/ENCDO268HEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31162/'], '@type': ['Target', 'Item'], 'name': 'Hr4-dmelanogaster', 'label': 'Hr4', '@id': '/targets/Hr4-dmelanogaster/', 'title': 'Hr4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '187abb32-56e6-487b-929d-08496ed6725f', 'status': 'released'} dm3 3L 7796724 7886686 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 481587364 Kevin White, UChicago 7f47fa992d11a0004047597f40cb1305 https://www.encodeproject.org/files/ENCFF727JKV/@@download/ENCFF727JKV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/f87d1ce1-7e2f-4acc-8d06-201b30075c44/ENCFF727JKV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF605QWE bam bam alignments dm3 ENCSR608LKO Control ChIP-seq /fly-donors/ENCDO268HEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31162/'], '@type': ['Target', 'Item'], 'name': 'Hr4-dmelanogaster', 'label': 'Hr4', '@id': '/targets/Hr4-dmelanogaster/', 'title': 'Hr4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '187abb32-56e6-487b-929d-08496ed6725f', 'status': 'released'} dm3 3L 7796724 7886686 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF727JKV/ 697644087 Kevin White, UChicago 7b9e14a7243fbac2cf42631fbc09fccf https://www.encodeproject.org/files/ENCFF605QWE/@@download/ENCFF605QWE.bam released s3://encode-public/2015/08/03/9eec7fd0-449b-44b9-8faa-8d29440ebd64/ENCFF605QWE.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF081QWZ bigWig bigWig signal of unique reads dm3 ENCSR608LKO Control ChIP-seq /fly-donors/ENCDO268HEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31162/'], '@type': ['Target', 'Item'], 'name': 'Hr4-dmelanogaster', 'label': 'Hr4', '@id': '/targets/Hr4-dmelanogaster/', 'title': 'Hr4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '187abb32-56e6-487b-929d-08496ed6725f', 'status': 'released'} dm3 3L 7796724 7886686 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF605QWE/ 15155440 Kevin White, UChicago 4b384af1c3c7f372b325b5f9dfa7b0e8 https://www.encodeproject.org/files/ENCFF081QWZ/@@download/ENCFF081QWZ.bigWig released s3://encode-public/2015/10/06/650b9884-828a-4673-bbbb-6866021896d0/ENCFF081QWZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF879KMQ bigWig bigWig read-depth normalized signal dm3 ENCSR608LKO Control ChIP-seq /fly-donors/ENCDO268HEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31162/'], '@type': ['Target', 'Item'], 'name': 'Hr4-dmelanogaster', 'label': 'Hr4', '@id': '/targets/Hr4-dmelanogaster/', 'title': 'Hr4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '187abb32-56e6-487b-929d-08496ed6725f', 'status': 'released'} dm3 3L 7796724 7886686 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF605QWE/ 15170931 Kevin White, UChicago 800627cd0d41d454e7e0cd3b50ff548f https://www.encodeproject.org/files/ENCFF879KMQ/@@download/ENCFF879KMQ.bigWig released s3://encode-public/2015/10/06/8c9d927c-9303-4bdf-a94c-0d0deb336463/ENCFF879KMQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF360FIB bam bam alignments dm6 ENCSR608LKO Control ChIP-seq /fly-donors/ENCDO268HEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31162/'], '@type': ['Target', 'Item'], 'name': 'Hr4-dmelanogaster', 'label': 'Hr4', '@id': '/targets/Hr4-dmelanogaster/', 'title': 'Hr4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '187abb32-56e6-487b-929d-08496ed6725f', 'status': 'released'} dm3 3L 7796724 7886686 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF727JKV/ 696471727 Kevin White, UChicago 52905d2a2d9e99ddeecd8d7d35694c6c https://www.encodeproject.org/files/ENCFF360FIB/@@download/ENCFF360FIB.bam released s3://encode-public/2016/04/20/a57c6c20-f859-462f-8dd0-03b205930ae4/ENCFF360FIB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF932BBE bigWig bigWig read-depth normalized signal dm6 ENCSR608LKO Control ChIP-seq /fly-donors/ENCDO268HEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31162/'], '@type': ['Target', 'Item'], 'name': 'Hr4-dmelanogaster', 'label': 'Hr4', '@id': '/targets/Hr4-dmelanogaster/', 'title': 'Hr4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '187abb32-56e6-487b-929d-08496ed6725f', 'status': 'released'} dm3 3L 7796724 7886686 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF360FIB/ 17270500 Kevin White, UChicago 7a29f993967259e43327616b95b35c09 https://www.encodeproject.org/files/ENCFF932BBE/@@download/ENCFF932BBE.bigWig released s3://encode-public/2016/06/20/fc9554ce-6981-4991-b7d2-520deb13fafa/ENCFF932BBE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF681KHI bigWig bigWig signal of unique reads dm6 ENCSR608LKO Control ChIP-seq /fly-donors/ENCDO268HEA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31162/'], '@type': ['Target', 'Item'], 'name': 'Hr4-dmelanogaster', 'label': 'Hr4', '@id': '/targets/Hr4-dmelanogaster/', 'title': 'Hr4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '187abb32-56e6-487b-929d-08496ed6725f', 'status': 'released'} dm3 3L 7796724 7886686 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF360FIB/ 17242577 Kevin White, UChicago e02d037e4169566ffbe8df89ac2fecc5 https://www.encodeproject.org/files/ENCFF681KHI/@@download/ENCFF681KHI.bigWig released s3://encode-public/2016/06/20/9bcf435c-ec45-45d5-aa3e-24e0e16a06f1/ENCFF681KHI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002AQN fastq fastq reads ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1103314853 Bing Ren, UCSD 4d95bc0ada45063d961f3c3e32a86acf SRA:SRR3652233 https://www.encodeproject.org/files/ENCFF002AQN/@@download/ENCFF002AQN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/d09fb347-d733-4b87-9b39-f573f4af3a50/ENCFF002AQN.fastq.gz low read length, mixed read lengths ENCFF002AQP fastq fastq reads ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1459997144 Bing Ren, UCSD 1f804b7f385b9b0fb2c2bcc9db6f9c9a SRA:SRR3652234 https://www.encodeproject.org/files/ENCFF002AQP/@@download/ENCFF002AQP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/94637c66-b50c-471d-97f0-86de65c850e0/ENCFF002AQP.fastq.gz low read length, mixed read lengths ENCFF508EFS bam bam unfiltered alignments mm10-minimal ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQP/ 1635624787 ENCODE Processing Pipeline 68a08c0642c759e32450df33c2902dd4 https://www.encodeproject.org/files/ENCFF508EFS/@@download/ENCFF508EFS.bam archived s3://encode-public/2015/02/09/0da8301f-3145-4f01-830b-780739804989/ENCFF508EFS.bam low read length, mixed read lengths ENCFF169TOW bam bam unfiltered alignments mm10-minimal ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002AQN/ 1218152115 ENCODE Processing Pipeline ee4294c08da60a2444aa3b9373a6c3a5 https://www.encodeproject.org/files/ENCFF169TOW/@@download/ENCFF169TOW.bam archived s3://encode-public/2015/02/09/dbd77efb-8b21-4769-ad36-8c2e2a69481f/ENCFF169TOW.bam low read length, mixed read lengths ENCFF576KAS bam bam alignments mm10-minimal ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002AQN/ 825114902 ENCODE Processing Pipeline 52e43f0e1b6a0132514da657600ebfd9 https://www.encodeproject.org/files/ENCFF576KAS/@@download/ENCFF576KAS.bam archived s3://encode-public/2015/05/24/13024c1d-b291-43d3-bcb7-eb7ac51e7c87/ENCFF576KAS.bam low read length, mixed read lengths ENCFF362MXD bam bam alignments mm10-minimal ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQP/ 1173628638 ENCODE Processing Pipeline 91b21695a30d51e2f7bf7adb25a5ad2e https://www.encodeproject.org/files/ENCFF362MXD/@@download/ENCFF362MXD.bam archived s3://encode-public/2015/05/24/272eb2da-2682-4567-b695-630c2622c6fd/ENCFF362MXD.bam low read length, mixed read lengths ENCFF890JJG bam bam unfiltered alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQN/ 1220032096 ENCODE Processing Pipeline 6327b11eb5d68e0433f275e17b0629e3 https://www.encodeproject.org/files/ENCFF890JJG/@@download/ENCFF890JJG.bam released s3://encode-public/2016/05/20/ad2a7dc2-4f5d-4d63-9f6d-cefefd3a2545/ENCFF890JJG.bam ENCODE3 mm10 archived low read length, mixed read lengths ENCFF304BRA bam bam alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQN/ 824874154 ENCODE Processing Pipeline 3de884dd1c0321a961aaac4a46a19d3c https://www.encodeproject.org/files/ENCFF304BRA/@@download/ENCFF304BRA.bam released s3://encode-public/2016/05/20/3a9c7e82-086b-485e-812b-6d7c4f191dec/ENCFF304BRA.bam ENCODE3 mm10 archived low read length, mixed read lengths ENCFF610UOQ bam bam unfiltered alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQP/ 1310120277 ENCODE Processing Pipeline 9666ca6e46d68ee44b84ea879b88be55 https://www.encodeproject.org/files/ENCFF610UOQ/@@download/ENCFF610UOQ.bam released s3://encode-public/2020/10/08/f3d82ea3-cc82-45bd-a149-43ea0dc2c211/ENCFF610UOQ.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths ENCFF504ATJ bam bam alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQP/ 968534744 ENCODE Processing Pipeline 0538ed6cb5074d72d73345389ae6446c https://www.encodeproject.org/files/ENCFF504ATJ/@@download/ENCFF504ATJ.bam released s3://encode-public/2020/10/08/171f5a94-ab94-49e8-90ef-0ea6f494a838/ENCFF504ATJ.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths ENCFF255MPO bam bam alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQP/ 899876502 ENCODE Processing Pipeline f1b549a0249756f8d1ed111b53688dfd https://www.encodeproject.org/files/ENCFF255MPO/@@download/ENCFF255MPO.bam released s3://encode-public/2016/11/22/d995479a-2b18-4428-bf18-f3edccdf47b2/ENCFF255MPO.bam ENCODE3 mm10 archived low read length, mixed read lengths ENCFF434HBT bam bam unfiltered alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQP/ 1343916487 ENCODE Processing Pipeline 3a2a3f8fe5e523cfa55c57a997d801c6 https://www.encodeproject.org/files/ENCFF434HBT/@@download/ENCFF434HBT.bam released s3://encode-public/2016/11/22/c21a9566-76de-4ad3-b2d3-0926409e9488/ENCFF434HBT.bam ENCODE3 mm10 archived low read length, mixed read lengths ENCFF381LOJ bam bam unfiltered alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQN/ 1185778046 ENCODE Processing Pipeline 568e38f43a76b1d8485ffdd7954a768b https://www.encodeproject.org/files/ENCFF381LOJ/@@download/ENCFF381LOJ.bam released s3://encode-public/2020/10/08/84eea437-fd4f-410e-af87-8a2599d42676/ENCFF381LOJ.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths ENCFF444JPW bam bam alignments mm10 ENCSR497YBQ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQN/ 885852592 ENCODE Processing Pipeline 68d87e031ff4b04a5a746718ba4ee5b1 https://www.encodeproject.org/files/ENCFF444JPW/@@download/ENCFF444JPW.bam released s3://encode-public/2020/10/08/e749d045-a81a-4090-b11c-484a3b10928a/ENCFF444JPW.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths ENCFF690YST bam bam unfiltered alignments hg19 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EGA/, /files/ENCFF807MUK/, /files/ENCFF002EGI/ 5545701117 ENCODE Processing Pipeline f15cd0aa539df4ae2fc5055b0eb4568d https://www.encodeproject.org/files/ENCFF690YST/@@download/ENCFF690YST.bam released s3://encode-public/2018/02/21/e4be86d1-66ee-4e21-8ee8-c542349247ff/ENCFF690YST.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF599OYL bam bam unfiltered alignments hg19 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFY/, /files/ENCFF002DUC/ 3483843980 ENCODE Processing Pipeline c5c8c37e01b68315f9c557b8d90ac259 https://www.encodeproject.org/files/ENCFF599OYL/@@download/ENCFF599OYL.bam released s3://encode-public/2018/02/22/3262031e-58b2-44e6-b50c-00f56ac3c217/ENCFF599OYL.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF002DUC fastq fastq reads ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EFY/ 1631998185 Michael Snyder, Stanford 7ce391df3c8ee038d11b85c37a625018 SRA:SRR5111764 https://www.encodeproject.org/files/ENCFF002DUC/@@download/ENCFF002DUC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/03/f3a79389-1458-446a-acbb-8e988ace6040/ENCFF002DUC.fastq.gz mild to moderate bottlenecking, low read depth ENCFF002EFY fastq fastq reads ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002DUC/ 1581696459 Michael Snyder, Stanford de668fcc1f528ab8074b8f1133c02bed SRA:SRR5111764 https://www.encodeproject.org/files/ENCFF002EFY/@@download/ENCFF002EFY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/0b4f867d-4991-47b6-9e5e-b30421a9676e/ENCFF002EFY.fastq.gz mild to moderate bottlenecking, low read depth ENCFF002EGA fastq fastq reads ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EGI/ 2557092067 Michael Snyder, Stanford 8cb67e6daec8c6f7cb0f88459b09ff7b SRA:SRR5111765 https://www.encodeproject.org/files/ENCFF002EGA/@@download/ENCFF002EGA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/4e280d1c-b04c-4564-8abd-5497a92a1d1b/ENCFF002EGA.fastq.gz mild to moderate bottlenecking, low read depth ENCFF002EGI fastq fastq reads ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EGA/ 2552601391 Michael Snyder, Stanford ccc9e85269d58667e7bc3ee13aec3261 SRA:SRR5111765 https://www.encodeproject.org/files/ENCFF002EGI/@@download/ENCFF002EGI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/aa64b699-a19b-4660-9908-3b6685543f49/ENCFF002EGI.fastq.gz mild to moderate bottlenecking, low read depth ENCFF344XRV bam bam alignments hg19 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EGA/, /files/ENCFF807MUK/, /files/ENCFF002EGI/ 4808303158 ENCODE Processing Pipeline a217be7dcd2719cbdc9de59459da12f2 https://www.encodeproject.org/files/ENCFF344XRV/@@download/ENCFF344XRV.bam released s3://encode-public/2015/10/29/92194517-d2d9-4108-be7b-2ea20a01b3a1/ENCFF344XRV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF407LJW bam bam alignments hg19 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFY/, /files/ENCFF002DUC/ 2652769248 ENCODE Processing Pipeline 549b99d47e605a9f0f3bcd6a74ec11a6 https://www.encodeproject.org/files/ENCFF407LJW/@@download/ENCFF407LJW.bam released s3://encode-public/2015/10/29/791e7fd0-5230-4dfb-b813-2e211775b3a9/ENCFF407LJW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF886HHO bam bam unfiltered alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFY/, /files/ENCFF002DUC/ 3484368812 ENCODE Processing Pipeline 53ca1cdab84da4912b26a0318eb2834c https://www.encodeproject.org/files/ENCFF886HHO/@@download/ENCFF886HHO.bam released s3://encode-public/2016/05/06/96b31603-2e51-4ab0-84ee-7732eba6f5ab/ENCFF886HHO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF527IMT bam bam unfiltered alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EGA/, /files/ENCFF643CGH/, /files/ENCFF002EGI/ 5551430596 ENCODE Processing Pipeline c245bd6353ea10b64af80b8b0c6b0861 https://www.encodeproject.org/files/ENCFF527IMT/@@download/ENCFF527IMT.bam released s3://encode-public/2016/05/06/3b2c6124-86c8-40e3-bb9a-6a420399b552/ENCFF527IMT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF937WDE bam bam alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFY/, /files/ENCFF002DUC/ 2653801804 ENCODE Processing Pipeline 4a4acc67747ec69a9de994df72707bed https://www.encodeproject.org/files/ENCFF937WDE/@@download/ENCFF937WDE.bam released s3://encode-public/2016/05/06/45aa93af-8684-497f-a3ca-7a6cabb6ecbd/ENCFF937WDE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF895QZG bam bam alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EGA/, /files/ENCFF643CGH/, /files/ENCFF002EGI/ 4809282103 ENCODE Processing Pipeline a993d9390bb0869fcfb3e3c500ff638e https://www.encodeproject.org/files/ENCFF895QZG/@@download/ENCFF895QZG.bam released s3://encode-public/2016/05/06/b01b70fa-9de6-49d3-8cd1-48354efe5107/ENCFF895QZG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF310OKZ bam bam unfiltered alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002DUC/, /files/ENCFF110MCL/, /files/ENCFF002EFY/ 3431799129 ENCODE Processing Pipeline a34401d9a4edfe3ed48e86d827aeedf3 https://www.encodeproject.org/files/ENCFF310OKZ/@@download/ENCFF310OKZ.bam released s3://encode-public/2020/06/13/3136269b-df33-40b5-b18e-a8972e9fb1d0/ENCFF310OKZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF970CZZ bam bam alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002DUC/, /files/ENCFF110MCL/, /files/ENCFF002EFY/ 2486581081 ENCODE Processing Pipeline 86a51a09c719a5e3eef811e4f72c585f https://www.encodeproject.org/files/ENCFF970CZZ/@@download/ENCFF970CZZ.bam released s3://encode-public/2020/06/13/902926eb-fe72-4483-a524-260f59d44ad5/ENCFF970CZZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF184UFL bam bam unfiltered alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EGA/, /files/ENCFF002EGI/, /files/ENCFF110MCL/ 5462856948 ENCODE Processing Pipeline 87d9a4f8d6d117b08bb840e5e34fbc46 https://www.encodeproject.org/files/ENCFF184UFL/@@download/ENCFF184UFL.bam released s3://encode-public/2020/06/13/c896aed5-d5c7-4524-a194-5149506770de/ENCFF184UFL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF037WIZ bam bam alignments GRCh38 ENCSR554FDZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EGA/, /files/ENCFF002EGI/, /files/ENCFF110MCL/ 4492210850 ENCODE Processing Pipeline 7ecec482de4a354618be7860242337d2 https://www.encodeproject.org/files/ENCFF037WIZ/@@download/ENCFF037WIZ.bam released s3://encode-public/2020/06/13/0ff3bccc-16ac-4216-850e-c833bbf5cbbc/ENCFF037WIZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF472OYN fastq fastq reads ENCSR342HXN Control ChIP-seq /fly-donors/ENCDO610UEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35678/'], '@type': ['Target', 'Item'], 'name': 'CG1620-dmelanogaster', 'label': 'CG1620', '@id': '/targets/CG1620-dmelanogaster/', 'title': 'CG1620 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c0a5223-9430-40b5-ae45-4db551ef3292', 'status': 'released'} dm3 2R 3371012 3392361 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 329909541 Kevin White, UChicago 78e6e2411032fe3813ca421d3af2a77f https://www.encodeproject.org/files/ENCFF472OYN/@@download/ENCFF472OYN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/b3e0fcce-0ae8-4557-a316-1c5138dae0e5/ENCFF472OYN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF631BEL bam bam alignments dm3 ENCSR342HXN Control ChIP-seq /fly-donors/ENCDO610UEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35678/'], '@type': ['Target', 'Item'], 'name': 'CG1620-dmelanogaster', 'label': 'CG1620', '@id': '/targets/CG1620-dmelanogaster/', 'title': 'CG1620 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c0a5223-9430-40b5-ae45-4db551ef3292', 'status': 'released'} dm3 2R 3371012 3392361 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF472OYN/ 453309314 Kevin White, UChicago 9077eecf1ea625eb970e04b162f5c979 https://www.encodeproject.org/files/ENCFF631BEL/@@download/ENCFF631BEL.bam released s3://encode-public/2015/08/05/aa5f024a-903a-4934-9ebb-bdd49f45ead0/ENCFF631BEL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF864SFX bigWig bigWig read-depth normalized signal dm3 ENCSR342HXN Control ChIP-seq /fly-donors/ENCDO610UEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35678/'], '@type': ['Target', 'Item'], 'name': 'CG1620-dmelanogaster', 'label': 'CG1620', '@id': '/targets/CG1620-dmelanogaster/', 'title': 'CG1620 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c0a5223-9430-40b5-ae45-4db551ef3292', 'status': 'released'} dm3 2R 3371012 3392361 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF631BEL/ 14875046 Kevin White, UChicago 9e0a630a56e7cc821ec7af7550e4f83e https://www.encodeproject.org/files/ENCFF864SFX/@@download/ENCFF864SFX.bigWig released s3://encode-public/2015/10/07/3ac11b19-7056-4090-889c-9726e2e78907/ENCFF864SFX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF027QOM bigWig bigWig signal of unique reads dm3 ENCSR342HXN Control ChIP-seq /fly-donors/ENCDO610UEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35678/'], '@type': ['Target', 'Item'], 'name': 'CG1620-dmelanogaster', 'label': 'CG1620', '@id': '/targets/CG1620-dmelanogaster/', 'title': 'CG1620 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c0a5223-9430-40b5-ae45-4db551ef3292', 'status': 'released'} dm3 2R 3371012 3392361 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF631BEL/ 14873647 Kevin White, UChicago 44b6c5c2151b24908e0871fcd1f058a7 https://www.encodeproject.org/files/ENCFF027QOM/@@download/ENCFF027QOM.bigWig released s3://encode-public/2015/10/07/2fe8a114-a4e8-46de-83f1-59b0da1df90b/ENCFF027QOM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF673OTZ bam bam alignments dm6 ENCSR342HXN Control ChIP-seq /fly-donors/ENCDO610UEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35678/'], '@type': ['Target', 'Item'], 'name': 'CG1620-dmelanogaster', 'label': 'CG1620', '@id': '/targets/CG1620-dmelanogaster/', 'title': 'CG1620 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c0a5223-9430-40b5-ae45-4db551ef3292', 'status': 'released'} dm3 2R 3371012 3392361 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF472OYN/ 449668494 Kevin White, UChicago fe3c8c64203f3e853f4fd7dc0bca689f https://www.encodeproject.org/files/ENCFF673OTZ/@@download/ENCFF673OTZ.bam released s3://encode-public/2016/04/21/fc6b8898-d0e6-4e51-80c9-2354ec2ee6b1/ENCFF673OTZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF384EEM bigWig bigWig read-depth normalized signal dm6 ENCSR342HXN Control ChIP-seq /fly-donors/ENCDO610UEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35678/'], '@type': ['Target', 'Item'], 'name': 'CG1620-dmelanogaster', 'label': 'CG1620', '@id': '/targets/CG1620-dmelanogaster/', 'title': 'CG1620 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c0a5223-9430-40b5-ae45-4db551ef3292', 'status': 'released'} dm3 2R 3371012 3392361 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF673OTZ/ 16817245 Kevin White, UChicago 1e54151004196d19895cceb08872f34a https://www.encodeproject.org/files/ENCFF384EEM/@@download/ENCFF384EEM.bigWig released s3://encode-public/2016/06/20/275603a8-d9b5-4c7e-b9a1-27a10d6b2af3/ENCFF384EEM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF086NCS bigWig bigWig signal of unique reads dm6 ENCSR342HXN Control ChIP-seq /fly-donors/ENCDO610UEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35678/'], '@type': ['Target', 'Item'], 'name': 'CG1620-dmelanogaster', 'label': 'CG1620', '@id': '/targets/CG1620-dmelanogaster/', 'title': 'CG1620 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c0a5223-9430-40b5-ae45-4db551ef3292', 'status': 'released'} dm3 2R 3371012 3392361 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF673OTZ/ 16800918 Kevin White, UChicago d2d84fad8871fda908fc0a4f9344d6dc https://www.encodeproject.org/files/ENCFF086NCS/@@download/ENCFF086NCS.bigWig released s3://encode-public/2016/06/20/fd1b22d1-ff47-49a3-afd7-783e0c4e2091/ENCFF086NCS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF194QGT fastq fastq reads ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 186555137 Michael Snyder, Stanford 6c8e874572130195fc673c61a07d9ba9 https://www.encodeproject.org/files/ENCFF194QGT/@@download/ENCFF194QGT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/18/7c5af29b-7ae3-4e6e-bffc-5a5f485b06bd/ENCFF194QGT.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF745CSR fastq fastq reads ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 183241698 Michael Snyder, Stanford e78433ba0933a68307b3fdfa18899a0f https://www.encodeproject.org/files/ENCFF745CSR/@@download/ENCFF745CSR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/d1b1e6b9-38de-4b33-a1df-fd9c199a74ae/ENCFF745CSR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF295OMU fastq fastq reads ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 111646419 Kevin White, UChicago 28dd6667888fdd47128ca12b1cd4ea0b https://www.encodeproject.org/files/ENCFF295OMU/@@download/ENCFF295OMU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/10/30/45cbfc12-acb2-4fa2-91f6-d60bbd14cc1e/ENCFF295OMU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF374YVA bam bam alignments ce10 ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF987UMF/, /files/ENCFF745CSR/, /files/ENCFF194QGT/, /files/ENCFF295OMU/ 537696466 Kevin White, UChicago 6c201943574935bc3bceea5d1a465b22 https://www.encodeproject.org/files/ENCFF374YVA/@@download/ENCFF374YVA.bam released s3://encode-public/2017/10/30/8b24b12d-46a6-41a2-b1ef-f0e84131da00/ENCFF374YVA.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF751ILI bam bam alignments ce11 ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF586MOL/, /files/ENCFF745CSR/, /files/ENCFF194QGT/, /files/ENCFF295OMU/ 538113936 Kevin White, UChicago f792a306a794a2c85da0182cc99e4480 https://www.encodeproject.org/files/ENCFF751ILI/@@download/ENCFF751ILI.bam released s3://encode-public/2017/10/30/1eb4d3a5-f94e-4fdb-9a1a-052ea0829d0b/ENCFF751ILI.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF965YEC bigWig bigWig signal of unique reads ce10 ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF374YVA/ 10028180 Kevin White, UChicago 4fc20fcecf6ce8c6dace18ce0b3bd6ef https://www.encodeproject.org/files/ENCFF965YEC/@@download/ENCFF965YEC.bigWig released s3://encode-public/2017/10/31/24b6cbef-325a-4369-a024-5ed916bfc54a/ENCFF965YEC.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF786AFY bigWig bigWig signal of unique reads ce11 ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF751ILI/ 10025693 Kevin White, UChicago dea5931664cf36d9488393a89c1135f5 https://www.encodeproject.org/files/ENCFF786AFY/@@download/ENCFF786AFY.bigWig released s3://encode-public/2017/10/31/0922d99a-e04d-4d52-ba9c-8e767b028944/ENCFF786AFY.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF634RRV bigWig bigWig read-depth normalized signal ce10 ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF374YVA/ 10039421 Kevin White, UChicago 3e805d8fafc2d78e21233cd4c730e01b https://www.encodeproject.org/files/ENCFF634RRV/@@download/ENCFF634RRV.bigWig released s3://encode-public/2017/10/31/f3f7ef4b-fb22-4365-b72a-62822c4f7616/ENCFF634RRV.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF840VIK bigWig bigWig read-depth normalized signal ce11 ENCSR132PKK Control ChIP-seq /worm-donors/ENCDO469BUK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174121/'], '@type': ['Target', 'Item'], 'name': 'egl-27-celegans', 'label': 'egl-27', '@id': '/targets/egl-27-celegans/', 'title': 'egl-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eafd20d8-d811-4e4a-932c-c6596825fbfa', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF751ILI/ 10039057 Kevin White, UChicago e17f323af45c3d6d0d178073f8d2144b https://www.encodeproject.org/files/ENCFF840VIK/@@download/ENCFF840VIK.bigWig released s3://encode-public/2017/10/31/2240f9ec-80b8-4ed6-bb7b-0e4f7e2ffa9c/ENCFF840VIK.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF360ZXY fastq fastq reads ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1028208886 Bradley Bernstein, Broad 4a4bcac39cc46cf5dcebb8ba9d83d3bb SRA:SRR5832845 https://www.encodeproject.org/files/ENCFF360ZXY/@@download/ENCFF360ZXY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/02aadbec-e5ae-40c2-ad32-6e44be06fae5/ENCFF360ZXY.fastq.gz ENCFF818YLR fastq fastq reads ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 993693753 Bradley Bernstein, Broad bd9ae2a8041ad14231cd05f3f9e1ad56 SRA:SRR5832846 https://www.encodeproject.org/files/ENCFF818YLR/@@download/ENCFF818YLR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/595756d2-b8c4-4f90-ba98-07b57c438122/ENCFF818YLR.fastq.gz ENCFF332CUC fastq fastq reads ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1405404102 Bradley Bernstein, Broad 5ddec732ea7e9989558fe3847ffe57e3 SRA:SRR5832847 https://www.encodeproject.org/files/ENCFF332CUC/@@download/ENCFF332CUC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/8fc2483b-b6f7-4c7c-a77b-34c3e046a035/ENCFF332CUC.fastq.gz ENCFF436CCE fastq fastq reads ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1419095310 Bradley Bernstein, Broad 3317bee74149c7bfb674fd0a975768dd SRA:SRR5832848 https://www.encodeproject.org/files/ENCFF436CCE/@@download/ENCFF436CCE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/69fc8e4e-ff4c-4e16-89b0-7dcfbb325c10/ENCFF436CCE.fastq.gz ENCFF161TIO bam bam unfiltered alignments GRCh38 ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF818YLR/, /files/ENCFF643CGH/, /files/ENCFF360ZXY/, /files/ENCFF332CUC/, /files/ENCFF436CCE/ 4638499346 ENCODE Processing Pipeline 5e09627a043a1906dcb1beb7809c59db https://www.encodeproject.org/files/ENCFF161TIO/@@download/ENCFF161TIO.bam released s3://encode-public/2016/10/27/2a290e04-e7eb-4252-932d-534240b94456/ENCFF161TIO.bam ENCODE3 GRCh38 archived ENCFF013XTX bam bam unfiltered alignments hg19 ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF818YLR/, /files/ENCFF807MUK/, /files/ENCFF360ZXY/, /files/ENCFF332CUC/, /files/ENCFF436CCE/ 4624056416 ENCODE Processing Pipeline 7062e1a1fbe2a7749dac71b6360608b7 https://www.encodeproject.org/files/ENCFF013XTX/@@download/ENCFF013XTX.bam released s3://encode-public/2016/10/27/25a77ca5-bf7d-4afb-acc2-67390a6a9dd6/ENCFF013XTX.bam ENCODE3 hg19 archived ENCFF419ELL bam bam alignments GRCh38 ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF818YLR/, /files/ENCFF643CGH/, /files/ENCFF360ZXY/, /files/ENCFF332CUC/, /files/ENCFF436CCE/ 3902111612 ENCODE Processing Pipeline 1124c60a6f062adc829ec33fc1fe961b https://www.encodeproject.org/files/ENCFF419ELL/@@download/ENCFF419ELL.bam released s3://encode-public/2016/10/27/514cae0e-418d-4619-a134-956f4e665ba4/ENCFF419ELL.bam ENCODE3 GRCh38 archived ENCFF928CHO bam bam alignments hg19 ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF818YLR/, /files/ENCFF807MUK/, /files/ENCFF360ZXY/, /files/ENCFF332CUC/, /files/ENCFF436CCE/ 3896505093 ENCODE Processing Pipeline b0cb9ffb643969a9c992c74b83782c58 https://www.encodeproject.org/files/ENCFF928CHO/@@download/ENCFF928CHO.bam released s3://encode-public/2016/10/27/8d60a203-57af-4098-bccc-1ba923cb5c60/ENCFF928CHO.bam ENCODE3 hg19 archived ENCFF099LBR bam bam alignments GRCh38 ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF332CUC/, /files/ENCFF360ZXY/, /files/ENCFF818YLR/, /files/ENCFF436CCE/ 3993929719 ENCODE Processing Pipeline 3487ca772964682c6838c20b6df77fc4 https://www.encodeproject.org/files/ENCFF099LBR/@@download/ENCFF099LBR.bam released s3://encode-public/2020/08/20/1c08c23b-b68b-45d9-9cb9-2d9eccb1967c/ENCFF099LBR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF037BYS bam bam unfiltered alignments GRCh38 ENCSR539HNK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF332CUC/, /files/ENCFF360ZXY/, /files/ENCFF818YLR/, /files/ENCFF436CCE/ 4698463607 ENCODE Processing Pipeline 610e30648c91f619bb3c2b0cb5f61c85 https://www.encodeproject.org/files/ENCFF037BYS/@@download/ENCFF037BYS.bam released s3://encode-public/2020/08/20/d49fd55b-1a52-4d98-8f8f-81875702641d/ENCFF037BYS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF582EXL fastq fastq reads ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 173374526 Michael Snyder, Stanford d4416de28e1cb112fd3ba4d43a80068f https://www.encodeproject.org/files/ENCFF582EXL/@@download/ENCFF582EXL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/db40220f-67d5-452d-b511-d4bc0d8ad7d6/ENCFF582EXL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF535VQL fastq fastq reads ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 176108677 Michael Snyder, Stanford 1efafd410f8a66838932b27f0bb7590f https://www.encodeproject.org/files/ENCFF535VQL/@@download/ENCFF535VQL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/9940bf73-6f09-4d67-a623-f49f60c2a474/ENCFF535VQL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF881WCB bam bam alignments ce10 ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF582EXL/, /files/ENCFF535VQL/, /files/ENCFF987UMF/ 445424640 Kevin White, UChicago 96ff89d601cd32c14daec32087aebe78 https://www.encodeproject.org/files/ENCFF881WCB/@@download/ENCFF881WCB.bam released s3://encode-public/2016/10/18/bc60debe-e65b-40e8-ba3a-8ef89da2b907/ENCFF881WCB.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF667JVN bam bam alignments ce11 ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF582EXL/, /files/ENCFF535VQL/, /files/ENCFF586MOL/ 445885557 Kevin White, UChicago 5ac71cb9b1fa227faa92de7517b30822 https://www.encodeproject.org/files/ENCFF667JVN/@@download/ENCFF667JVN.bam released s3://encode-public/2016/10/18/e6e0b18a-a9a9-4e23-8827-e60fa972535f/ENCFF667JVN.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF953IVU bigWig bigWig read-depth normalized signal ce10 ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF881WCB/ 10010981 Kevin White, UChicago afd402ff79670a3271b6829deade1f47 https://www.encodeproject.org/files/ENCFF953IVU/@@download/ENCFF953IVU.bigWig released s3://encode-public/2016/10/20/3bf28b91-7820-4ef9-b2f6-b27711026c0e/ENCFF953IVU.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF526AFE bigWig bigWig signal of unique reads ce10 ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF881WCB/ 10026094 Kevin White, UChicago 8b35f3633c11de488a4b343aa3b93a5c https://www.encodeproject.org/files/ENCFF526AFE/@@download/ENCFF526AFE.bigWig released s3://encode-public/2016/10/20/de723a5e-e295-4405-a106-3d68cb954ce9/ENCFF526AFE.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF763CPG bigWig bigWig signal of unique reads ce11 ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF667JVN/ 10023296 Kevin White, UChicago 6a85bec01b5fe6f37470ebfcdcba561b https://www.encodeproject.org/files/ENCFF763CPG/@@download/ENCFF763CPG.bigWig released s3://encode-public/2016/10/20/f686ab89-4137-477c-bcf0-3fcf8a899027/ENCFF763CPG.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF515JSS bigWig bigWig read-depth normalized signal ce11 ENCSR494DGU Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF667JVN/ 9999247 Kevin White, UChicago f6281945933f63af8f5b29b0575a0ac9 https://www.encodeproject.org/files/ENCFF515JSS/@@download/ENCFF515JSS.bigWig released s3://encode-public/2016/10/20/07f259db-f312-4aff-a87b-98e34a5f7431/ENCFF515JSS.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF861HTK fastq fastq reads ENCSR727CMS Control ChIP-seq /worm-donors/ENCDO402KVP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175492/'], '@type': ['Target', 'Item'], 'name': 'dpy-27-celegans', 'label': 'dpy-27', '@id': '/targets/dpy-27-celegans/', 'title': 'dpy-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'c355e41d-c560-42e8-8652-04e946d7cd98', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 27 single-ended 152121497 Michael Snyder, Stanford a18a9b27b77d500b2dbbb948594dda09 https://www.encodeproject.org/files/ENCFF861HTK/@@download/ENCFF861HTK.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/d4d81282-78f8-4974-9cbf-1489ce6f513a/ENCFF861HTK.fastq.gz lacking processed data, missing genetic modification characterization, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF560KHU fastq fastq reads ENCSR727CMS Control ChIP-seq /worm-donors/ENCDO402KVP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175492/'], '@type': ['Target', 'Item'], 'name': 'dpy-27-celegans', 'label': 'dpy-27', '@id': '/targets/dpy-27-celegans/', 'title': 'dpy-27 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'c355e41d-c560-42e8-8652-04e946d7cd98', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 101197082 Michael Snyder, Stanford c3392c8a7be490afec9d889087a42ca1 https://www.encodeproject.org/files/ENCFF560KHU/@@download/ENCFF560KHU.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/18/90947872-8228-47d8-b124-3778f48d3026/ENCFF560KHU.fastq.gz lacking processed data, missing genetic modification characterization, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF983BPL bam bam unfiltered alignments hg19 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHE/, /files/ENCFF002EHF/, /files/ENCFF807MUK/ 8155081407 ENCODE Processing Pipeline 7a50ff2545a1b5c62e5b1a37abd3c276 https://www.encodeproject.org/files/ENCFF983BPL/@@download/ENCFF983BPL.bam released s3://encode-public/2018/02/21/d018b435-914d-4c6a-921e-be476e05cc1b/ENCFF983BPL.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF425RSL bam bam unfiltered alignments hg19 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002DUF/, /files/ENCFF807MUK/, /files/ENCFF002EGX/ 6282536121 ENCODE Processing Pipeline 9bdf4c23578f7e87af3ee15b6d431526 https://www.encodeproject.org/files/ENCFF425RSL/@@download/ENCFF425RSL.bam released s3://encode-public/2018/02/21/01dcf5cf-98b0-41d1-a740-82c31ecf3bc4/ENCFF425RSL.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF002DUF fastq fastq reads ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EGX/ 2900900568 Michael Snyder, Stanford 9b4d55d493bf1bce02b649e3bc7d9c9b SRA:SRR5111825 https://www.encodeproject.org/files/ENCFF002DUF/@@download/ENCFF002DUF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/03/9b17a048-38c7-44a6-a9b3-2664a511d6dd/ENCFF002DUF.fastq.gz mild to moderate bottlenecking ENCFF002EGX fastq fastq reads ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002DUF/ 2877290438 Michael Snyder, Stanford 6f7c8964d1f1a7fddd242f92d5bda0f1 SRA:SRR5111825 https://www.encodeproject.org/files/ENCFF002EGX/@@download/ENCFF002EGX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/c2bf5cfa-86ca-4d1a-816a-7af1cd20f0b3/ENCFF002EGX.fastq.gz mild to moderate bottlenecking ENCFF002EHE fastq fastq reads ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EHF/ 3844372852 Michael Snyder, Stanford 90a9398ce57e4317208ae3cd089671fe SRA:SRR5111826 https://www.encodeproject.org/files/ENCFF002EHE/@@download/ENCFF002EHE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/34691461-834c-4bbd-8c98-00d0a3812a66/ENCFF002EHE.fastq.gz mild to moderate bottlenecking ENCFF002EHF fastq fastq reads ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EHE/ 3913872407 Michael Snyder, Stanford 51dbd410201102a8285cbaa60f83bafe SRA:SRR5111826 https://www.encodeproject.org/files/ENCFF002EHF/@@download/ENCFF002EHF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/99f40bef-1ec1-42a7-8be7-c7fbc43fa63c/ENCFF002EHF.fastq.gz mild to moderate bottlenecking ENCFF644XWI bam bam alignments hg19 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHE/, /files/ENCFF002EHF/, /files/ENCFF807MUK/ 6589417920 ENCODE Processing Pipeline 1042f5ed6b2fe56bdc4a17980ce0f386 https://www.encodeproject.org/files/ENCFF644XWI/@@download/ENCFF644XWI.bam released s3://encode-public/2015/10/28/d8f39985-01ee-4bbb-bc3c-16cc07b1b8ca/ENCFF644XWI.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF579GRX bam bam alignments hg19 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002DUF/, /files/ENCFF807MUK/, /files/ENCFF002EGX/ 5501803653 ENCODE Processing Pipeline 58435f1f7ef200152b7d8b3dae5db24e https://www.encodeproject.org/files/ENCFF579GRX/@@download/ENCFF579GRX.bam released s3://encode-public/2015/10/29/e0c118b5-7058-406c-96e2-99d754c318d6/ENCFF579GRX.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF722CPV bam bam unfiltered alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002DUF/, /files/ENCFF643CGH/, /files/ENCFF002EGX/ 6295496559 ENCODE Processing Pipeline 0e88ae6f091e1a6770402ecdb92261ef https://www.encodeproject.org/files/ENCFF722CPV/@@download/ENCFF722CPV.bam released s3://encode-public/2016/05/06/dc906344-bdcb-4e9b-837e-3d0996fbfdc7/ENCFF722CPV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF510NGZ bam bam unfiltered alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHE/, /files/ENCFF002EHF/, /files/ENCFF643CGH/ 8167475566 ENCODE Processing Pipeline 6dc58d9d6f955b943ab5162436521d65 https://www.encodeproject.org/files/ENCFF510NGZ/@@download/ENCFF510NGZ.bam released s3://encode-public/2016/05/06/123341f9-8c5e-49fa-9a86-d275ca1d14c9/ENCFF510NGZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF911GNE bam bam alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002DUF/, /files/ENCFF643CGH/, /files/ENCFF002EGX/ 5506528535 ENCODE Processing Pipeline 2da801b2f6ce742745850d1def797bef https://www.encodeproject.org/files/ENCFF911GNE/@@download/ENCFF911GNE.bam released s3://encode-public/2016/05/06/e8cacfb3-22f5-4244-a9a0-2812f72058fa/ENCFF911GNE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF873GMF bam bam alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHE/, /files/ENCFF002EHF/, /files/ENCFF643CGH/ 6594934820 ENCODE Processing Pipeline e6855c02023090a614899349f1cb443a https://www.encodeproject.org/files/ENCFF873GMF/@@download/ENCFF873GMF.bam released s3://encode-public/2016/05/06/ff047d1c-a255-4ca7-a84e-3a1c81af347a/ENCFF873GMF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF346AUF bam bam alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EHE/, /files/ENCFF002EHF/ 6247315243 ENCODE Processing Pipeline 531aaca304455a0552bea2f9c385f16a https://www.encodeproject.org/files/ENCFF346AUF/@@download/ENCFF346AUF.bam released s3://encode-public/2020/06/13/1530a629-bb97-49d6-a2af-4074e113b0da/ENCFF346AUF.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF868AQW bam bam unfiltered alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002DUF/, /files/ENCFF002EGX/ 6176166234 ENCODE Processing Pipeline 0721785b223c0267a953e226d84328b4 https://www.encodeproject.org/files/ENCFF868AQW/@@download/ENCFF868AQW.bam released s3://encode-public/2020/06/13/232e66db-0b64-46f2-b05b-c61fce194792/ENCFF868AQW.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF784HLY bam bam unfiltered alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EHE/, /files/ENCFF002EHF/ 8045716076 ENCODE Processing Pipeline c1ffc072f68b8ce4a844d045bb71331f https://www.encodeproject.org/files/ENCFF784HLY/@@download/ENCFF784HLY.bam released s3://encode-public/2020/06/13/0ada8766-395f-4e02-a2aa-e7a2eb907e54/ENCFF784HLY.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF612QJN bam bam alignments GRCh38 ENCSR594UCI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002DUF/, /files/ENCFF002EGX/ 5204508582 ENCODE Processing Pipeline d93be1fb7bce4729ffb45f29b02ec6b4 https://www.encodeproject.org/files/ENCFF612QJN/@@download/ENCFF612QJN.bam released s3://encode-public/2020/06/13/0f767ffc-4252-4fd0-8e51-981a8391ee79/ENCFF612QJN.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF446CED fastq fastq reads ENCSR276SJC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 576488044 Kevin White, UChicago ba33e8977912d42dd633cda263a1698e https://www.encodeproject.org/files/ENCFF446CED/@@download/ENCFF446CED.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/15/86c64a01-2a3b-4240-9b34-fea9e1b31fee/ENCFF446CED.fastq.gz ENCFF147WIX bam bam alignments dm3 ENCSR276SJC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF059UHX/, /files/ENCFF446CED/ 720293425 Kevin White, UChicago fbfc80c9d0faf591912bd4755dbb813d https://www.encodeproject.org/files/ENCFF147WIX/@@download/ENCFF147WIX.bam released s3://encode-public/2017/06/19/1b160393-c30c-458f-9c58-1ac1fcb281b3/ENCFF147WIX.bam Lab custom dm3 archived ENCFF769AWX bam bam alignments dm6 ENCSR276SJC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF479RCH/, /files/ENCFF446CED/ 713090940 Kevin White, UChicago cae838d241763d77178046e0e591fc0c https://www.encodeproject.org/files/ENCFF769AWX/@@download/ENCFF769AWX.bam released s3://encode-public/2017/06/28/77298555-006b-4e56-847c-b99826c671d5/ENCFF769AWX.bam Lab custom dm6 released ENCFF789IYV bigWig bigWig signal of unique reads dm3 ENCSR276SJC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF147WIX/ 15293149 Kevin White, UChicago f288ce8296270a7cb65ffe7d9a9ee7f2 https://www.encodeproject.org/files/ENCFF789IYV/@@download/ENCFF789IYV.bigWig released s3://encode-public/2017/06/29/1d867a8e-30cb-4727-bcfd-e1c058f19a58/ENCFF789IYV.bigWig Lab custom dm3 archived ENCFF994LCS bigWig bigWig read-depth normalized signal dm3 ENCSR276SJC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF147WIX/ 15303445 Kevin White, UChicago 768f968f03ad7781e103ced6b2ac760c https://www.encodeproject.org/files/ENCFF994LCS/@@download/ENCFF994LCS.bigWig released s3://encode-public/2017/06/29/b9fffb99-18f8-44fb-8b58-0f7c0651cbd8/ENCFF994LCS.bigWig Lab custom dm3 archived ENCFF471AZA bigWig bigWig read-depth normalized signal dm6 ENCSR276SJC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF769AWX/ 17463043 Kevin White, UChicago a8e65c5efb7037af0b1dabaa67aed3fb https://www.encodeproject.org/files/ENCFF471AZA/@@download/ENCFF471AZA.bigWig released s3://encode-public/2017/06/30/f82d2cfe-12fb-4d05-8bcf-6ed814b7225f/ENCFF471AZA.bigWig Lab custom dm6 released ENCFF967QVV bigWig bigWig signal of unique reads dm6 ENCSR276SJC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF769AWX/ 17458213 Kevin White, UChicago 6afd06f803f5e7b6b302cd75d3aef08e https://www.encodeproject.org/files/ENCFF967QVV/@@download/ENCFF967QVV.bigWig released s3://encode-public/2017/06/30/464c77ed-4089-40dd-a6b6-5cf5f287d19e/ENCFF967QVV.bigWig Lab custom dm6 released ENCFF642QUT fastq fastq reads ENCSR955GGX Control ChIP-seq /fly-donors/ENCDO635QPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34748/'], '@type': ['Target', 'Item'], 'name': 'Bdp1-dmelanogaster', 'label': 'Bdp1', '@id': '/targets/Bdp1-dmelanogaster/', 'title': 'Bdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7ffa5205-d74c-4eef-9bc3-0523d2526b0a', 'status': 'released'} dm3 2L 13364552 13387781 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 650125248 Kevin White, UChicago bdbdaa103243d50abf6253ec0537355f https://www.encodeproject.org/files/ENCFF642QUT/@@download/ENCFF642QUT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/2470cc6e-1323-45bc-ba3d-31f9e26445c1/ENCFF642QUT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF076GOZ bam bam alignments dm3 ENCSR955GGX Control ChIP-seq /fly-donors/ENCDO635QPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34748/'], '@type': ['Target', 'Item'], 'name': 'Bdp1-dmelanogaster', 'label': 'Bdp1', '@id': '/targets/Bdp1-dmelanogaster/', 'title': 'Bdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7ffa5205-d74c-4eef-9bc3-0523d2526b0a', 'status': 'released'} dm3 2L 13364552 13387781 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF642QUT/ 936404999 Kevin White, UChicago f8327f62e79e780786cd9af331a278fe https://www.encodeproject.org/files/ENCFF076GOZ/@@download/ENCFF076GOZ.bam released s3://encode-public/2015/08/03/7a81163a-0990-400d-a09f-07a9270fe60c/ENCFF076GOZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF636MNS bigWig bigWig read-depth normalized signal dm3 ENCSR955GGX Control ChIP-seq /fly-donors/ENCDO635QPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34748/'], '@type': ['Target', 'Item'], 'name': 'Bdp1-dmelanogaster', 'label': 'Bdp1', '@id': '/targets/Bdp1-dmelanogaster/', 'title': 'Bdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7ffa5205-d74c-4eef-9bc3-0523d2526b0a', 'status': 'released'} dm3 2L 13364552 13387781 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF076GOZ/ 15321657 Kevin White, UChicago b26fb643dae694ffbe848dbf20d890f7 https://www.encodeproject.org/files/ENCFF636MNS/@@download/ENCFF636MNS.bigWig released s3://encode-public/2015/10/05/ec6a6569-c75a-474a-86a0-2487efc162ab/ENCFF636MNS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF139NEG bigWig bigWig signal of unique reads dm3 ENCSR955GGX Control ChIP-seq /fly-donors/ENCDO635QPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34748/'], '@type': ['Target', 'Item'], 'name': 'Bdp1-dmelanogaster', 'label': 'Bdp1', '@id': '/targets/Bdp1-dmelanogaster/', 'title': 'Bdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7ffa5205-d74c-4eef-9bc3-0523d2526b0a', 'status': 'released'} dm3 2L 13364552 13387781 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF076GOZ/ 15315957 Kevin White, UChicago c0e2a088ab4786fcf1c5c7fd6c6a39f5 https://www.encodeproject.org/files/ENCFF139NEG/@@download/ENCFF139NEG.bigWig released s3://encode-public/2015/10/05/cf1d2bcd-2a24-44a4-9ea7-01651c0f798c/ENCFF139NEG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF644RGF bam bam alignments dm6 ENCSR955GGX Control ChIP-seq /fly-donors/ENCDO635QPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34748/'], '@type': ['Target', 'Item'], 'name': 'Bdp1-dmelanogaster', 'label': 'Bdp1', '@id': '/targets/Bdp1-dmelanogaster/', 'title': 'Bdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7ffa5205-d74c-4eef-9bc3-0523d2526b0a', 'status': 'released'} dm3 2L 13364552 13387781 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF642QUT/ 930569712 Kevin White, UChicago a7cc4ae85e97d2a4d8850ade7ff82348 https://www.encodeproject.org/files/ENCFF644RGF/@@download/ENCFF644RGF.bam released s3://encode-public/2016/04/21/4aa6961d-4be8-4fe0-932e-75d1000c108d/ENCFF644RGF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF323LLY bigWig bigWig read-depth normalized signal dm6 ENCSR955GGX Control ChIP-seq /fly-donors/ENCDO635QPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34748/'], '@type': ['Target', 'Item'], 'name': 'Bdp1-dmelanogaster', 'label': 'Bdp1', '@id': '/targets/Bdp1-dmelanogaster/', 'title': 'Bdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7ffa5205-d74c-4eef-9bc3-0523d2526b0a', 'status': 'released'} dm3 2L 13364552 13387781 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF644RGF/ 17449874 Kevin White, UChicago 3100e26527d7044de8459174ad5f1045 https://www.encodeproject.org/files/ENCFF323LLY/@@download/ENCFF323LLY.bigWig released s3://encode-public/2016/06/20/8cd46b53-c6a8-4c61-ab64-28af295f39e5/ENCFF323LLY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF532VCS bigWig bigWig signal of unique reads dm6 ENCSR955GGX Control ChIP-seq /fly-donors/ENCDO635QPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34748/'], '@type': ['Target', 'Item'], 'name': 'Bdp1-dmelanogaster', 'label': 'Bdp1', '@id': '/targets/Bdp1-dmelanogaster/', 'title': 'Bdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7ffa5205-d74c-4eef-9bc3-0523d2526b0a', 'status': 'released'} dm3 2L 13364552 13387781 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF644RGF/ 17443684 Kevin White, UChicago 23d54192fb564a17750bf48560cb8107 https://www.encodeproject.org/files/ENCFF532VCS/@@download/ENCFF532VCS.bigWig released s3://encode-public/2016/06/20/a8e7e1bb-a3e3-4d5a-87e0-e239475dfad9/ENCFF532VCS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF214KMN fastq fastq reads ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 single-ended 1698784389 Bradley Bernstein, Broad e915f38a9042c082b4593d25ea621a9b SRA:SRR5832999 https://www.encodeproject.org/files/ENCFF214KMN/@@download/ENCFF214KMN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/03/5a77f593-86f0-4a3c-adc1-a8dbde1183c8/ENCFF214KMN.fastq.gz ENCFF920WNX fastq fastq reads ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 2 2_1 76 single-ended 1318379241 Bradley Bernstein, Broad 69b27f7408b86cc9a207c5b2b44f3190 SRA:SRR5832997 https://www.encodeproject.org/files/ENCFF920WNX/@@download/ENCFF920WNX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/03/bc0b0714-aefa-4932-886f-8e9072d6ba5f/ENCFF920WNX.fastq.gz ENCFF343EVP fastq fastq reads ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_2 76 single-ended 2122276755 Bradley Bernstein, Broad 0f7ff97dec2ab06200c707e9777f8b7d SRA:SRR5832998 https://www.encodeproject.org/files/ENCFF343EVP/@@download/ENCFF343EVP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/03/ea2f7095-dc5c-42b9-900f-4f4b45718cb6/ENCFF343EVP.fastq.gz ENCFF226SLF bam bam unfiltered alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF920WNX/ 1605865762 ENCODE Processing Pipeline 6763f505a489023bee73321650f9ed5f https://www.encodeproject.org/files/ENCFF226SLF/@@download/ENCFF226SLF.bam released s3://encode-public/2016/06/30/510d4619-8ce9-42fc-8502-6c16722b3ea6/ENCFF226SLF.bam ENCODE3 GRCh38 archived ENCFF347TXP bam bam unfiltered alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF343EVP/, /files/ENCFF643CGH/, /files/ENCFF214KMN/ 4319855870 ENCODE Processing Pipeline 49c96bd0d657f00c9da11f069091d96f https://www.encodeproject.org/files/ENCFF347TXP/@@download/ENCFF347TXP.bam released s3://encode-public/2016/06/30/481403b3-8747-4bc2-8666-1ffd27265fa9/ENCFF347TXP.bam ENCODE3 GRCh38 archived ENCFF572IKT bam bam alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF343EVP/, /files/ENCFF643CGH/, /files/ENCFF214KMN/ 3649944969 ENCODE Processing Pipeline 79cbdaf1146a50f46b8beb8a359e8827 https://www.encodeproject.org/files/ENCFF572IKT/@@download/ENCFF572IKT.bam released s3://encode-public/2016/06/30/12ef9143-c8e9-460e-907c-37ce08704903/ENCFF572IKT.bam ENCODE3 GRCh38 archived ENCFF714AMB bam bam alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF920WNX/ 1343841578 ENCODE Processing Pipeline 49f02ae34d37239f2093b6d134d79bda https://www.encodeproject.org/files/ENCFF714AMB/@@download/ENCFF714AMB.bam released s3://encode-public/2016/06/30/f103f318-fc83-47fe-ba4c-36e5c0a1a3d3/ENCFF714AMB.bam ENCODE3 GRCh38 archived ENCFF945HHO bam bam unfiltered alignments hg19 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF920WNX/ 1601084528 ENCODE Processing Pipeline 0ffd13e1f8733afae951acdc023849ab https://www.encodeproject.org/files/ENCFF945HHO/@@download/ENCFF945HHO.bam released s3://encode-public/2016/10/26/7c001891-727e-4e2f-aba1-d73f1484e7c1/ENCFF945HHO.bam ENCODE3 hg19 archived ENCFF433CST bam bam unfiltered alignments hg19 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF343EVP/, /files/ENCFF807MUK/, /files/ENCFF214KMN/ 4307053690 ENCODE Processing Pipeline af9ad91e780bcf0e4ab1222ebddea648 https://www.encodeproject.org/files/ENCFF433CST/@@download/ENCFF433CST.bam released s3://encode-public/2016/10/26/f791d497-071b-4c62-8643-be2a8ccdbc42/ENCFF433CST.bam ENCODE3 hg19 archived ENCFF801GGG bam bam alignments hg19 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF920WNX/ 1342143849 ENCODE Processing Pipeline 5eb05ad7b792e968a24ff68a96e35a61 https://www.encodeproject.org/files/ENCFF801GGG/@@download/ENCFF801GGG.bam released s3://encode-public/2016/10/26/0637f74a-09f7-48da-ada5-aa01a1f12ff3/ENCFF801GGG.bam ENCODE3 hg19 archived ENCFF881DVS bam bam alignments hg19 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF343EVP/, /files/ENCFF807MUK/, /files/ENCFF214KMN/ 3644870370 ENCODE Processing Pipeline ae3c1fc1992ab89d0a6bd0465337ded4 https://www.encodeproject.org/files/ENCFF881DVS/@@download/ENCFF881DVS.bam released s3://encode-public/2016/10/26/c79a5058-1850-4673-b7cc-410b8d6381a4/ENCFF881DVS.bam ENCODE3 hg19 archived ENCFF293RFQ bam bam unfiltered alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF920WNX/ 1626719845 ENCODE Processing Pipeline 0d2c909bb336559ac31651eeecf3dd18 https://www.encodeproject.org/files/ENCFF293RFQ/@@download/ENCFF293RFQ.bam released s3://encode-public/2020/08/20/272c36db-93e8-464d-9193-3b64ee615e48/ENCFF293RFQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF938FPO bam bam alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF343EVP/, /files/ENCFF214KMN/, /files/ENCFF110MCL/ 3746209237 ENCODE Processing Pipeline d6258ed9a6c58fc3e63bb8a8cfc2e8b3 https://www.encodeproject.org/files/ENCFF938FPO/@@download/ENCFF938FPO.bam released s3://encode-public/2020/08/20/4b3f8236-7fcb-494a-b225-9a4a8f3ebbbc/ENCFF938FPO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF576HRH bam bam unfiltered alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF343EVP/, /files/ENCFF214KMN/, /files/ENCFF110MCL/ 4368445331 ENCODE Processing Pipeline 5a6d8b620789b89f92f3a53674948244 https://www.encodeproject.org/files/ENCFF576HRH/@@download/ENCFF576HRH.bam released s3://encode-public/2020/08/20/65958ac9-0731-4fc4-a149-2bebadc0b953/ENCFF576HRH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF819NFE bam bam alignments GRCh38 ENCSR787VQB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2016-06-30 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF920WNX/ 1375233962 ENCODE Processing Pipeline e7d329ebe773e0c24735fc77e20d059d https://www.encodeproject.org/files/ENCFF819NFE/@@download/ENCFF819NFE.bam released s3://encode-public/2020/08/20/be1f0bf2-2961-41d6-888e-38e80645f49b/ENCFF819NFE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF255IBZ fastq fastq reads ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 170927011 Kevin White, UChicago 53a0f52d069de000444b03ebb5ada122 https://www.encodeproject.org/files/ENCFF255IBZ/@@download/ENCFF255IBZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF523MNX/ released s3://encode-public/2015/07/30/01bcd83b-257a-4857-9b87-7e3e4af2c4e4/ENCFF255IBZ.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF782YDU fastq fastq reads ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_3 50 single-ended 109396677 Kevin White, UChicago 146bad4a76769f85706e1f95d8d9f0a9 https://www.encodeproject.org/files/ENCFF782YDU/@@download/ENCFF782YDU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF523MNX/ released s3://encode-public/2015/07/30/39c115c7-f329-4542-8302-68ee851f8d94/ENCFF782YDU.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF580GJN fastq fastq reads ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_2 50 single-ended 189210669 Kevin White, UChicago 2879a8ec597b4fe150e693d5dc4f246f https://www.encodeproject.org/files/ENCFF580GJN/@@download/ENCFF580GJN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF523MNX/ released s3://encode-public/2015/07/30/0daaf8b2-997a-4d67-9016-a39c1303e0f4/ENCFF580GJN.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF640LTY bam bam alignments ce10 ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2, 1_3 32 /files/ENCFF987UMF/, /files/ENCFF782YDU/, /files/ENCFF580GJN/, /files/ENCFF255IBZ/ 681197526 Kevin White, UChicago 9113a63c71b1ecfe85566b8d8f87d18a https://www.encodeproject.org/files/ENCFF640LTY/@@download/ENCFF640LTY.bam released s3://encode-public/2015/08/19/e4e401cc-da00-4fbc-9156-00fd78aaf87d/ENCFF640LTY.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF709ZJO bigWig bigWig signal of unique reads ce10 ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2, 1_3 /files/ENCFF640LTY/ 9997632 Kevin White, UChicago 0f4d8903a68d0e894fe7aec7703d23c5 https://www.encodeproject.org/files/ENCFF709ZJO/@@download/ENCFF709ZJO.bigWig released s3://encode-public/2015/10/02/e2664709-eca5-474e-aeb8-6be6fb14264c/ENCFF709ZJO.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF125PCC bigWig bigWig read-depth normalized signal ce10 ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2, 1_3 /files/ENCFF640LTY/ 9996862 Kevin White, UChicago c6c18c1601eba415b9e67831971505e9 https://www.encodeproject.org/files/ENCFF125PCC/@@download/ENCFF125PCC.bigWig released s3://encode-public/2015/10/02/3ba050da-a662-43a5-add2-cbca67502d79/ENCFF125PCC.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF692ZXQ bam bam alignments ce11 ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2, 1_3 32 /files/ENCFF586MOL/, /files/ENCFF782YDU/, /files/ENCFF580GJN/, /files/ENCFF255IBZ/ 682106695 Kevin White, UChicago b41dd88f55ed552723bb4cc531fedc5d https://www.encodeproject.org/files/ENCFF692ZXQ/@@download/ENCFF692ZXQ.bam released s3://encode-public/2016/02/02/cc1dc099-a7e0-4488-a49c-1444e7d3465a/ENCFF692ZXQ.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF745UGP bigWig bigWig signal of unique reads ce11 ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2, 1_3 /files/ENCFF692ZXQ/ 9980914 Kevin White, UChicago 7a5761acd67fcb8918a9be3335c5b125 https://www.encodeproject.org/files/ENCFF745UGP/@@download/ENCFF745UGP.bigWig released s3://encode-public/2016/02/03/11a7bd9d-bbb0-4647-ab87-9568d7c7f831/ENCFF745UGP.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF164NSU bigWig bigWig read-depth normalized signal ce11 ENCSR921EWW Control ChIP-seq /worm-donors/ENCDO591GBT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2, 1_3 /files/ENCFF692ZXQ/ 9978090 Kevin White, UChicago b7c0e0d30624f88606f2f3d3ba3d82b1 https://www.encodeproject.org/files/ENCFF164NSU/@@download/ENCFF164NSU.bigWig released s3://encode-public/2016/02/03/251613e5-37f0-47e8-898c-685f2161db7f/ENCFF164NSU.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF771RXR fastq fastq reads ENCSR227MZM Control ChIP-seq /fly-donors/ENCDO353WZO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40783/'], '@type': ['Target', 'Item'], 'name': 'Hr83-dmelanogaster', 'label': 'Hr83', '@id': '/targets/Hr83-dmelanogaster/', 'title': 'Hr83 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e93f54c-373d-484f-9680-da9099a597a5', 'status': 'released'} dm3 3R 2166787 2188721 DNA 2016-07-06 modERN sonication (Bioruptor generic) 175-250 1 1_1 50 single-ended 262838029 Kevin White, UChicago 730c5cdf7e8962664e9ba2819ecbff21 https://www.encodeproject.org/files/ENCFF771RXR/@@download/ENCFF771RXR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/a8a49deb-5e82-4f74-8516-9f49e5f2e302/ENCFF771RXR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF364RIG bam bam alignments dm3 ENCSR227MZM Control ChIP-seq /fly-donors/ENCDO353WZO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40783/'], '@type': ['Target', 'Item'], 'name': 'Hr83-dmelanogaster', 'label': 'Hr83', '@id': '/targets/Hr83-dmelanogaster/', 'title': 'Hr83 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e93f54c-373d-484f-9680-da9099a597a5', 'status': 'released'} dm3 3R 2166787 2188721 DNA 2016-07-06 modERN sonication (Bioruptor generic) 175-250 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF771RXR/ 359681012 Kevin White, UChicago 0eadc6dff13aac4a51bbb60128a51b8e https://www.encodeproject.org/files/ENCFF364RIG/@@download/ENCFF364RIG.bam released s3://encode-public/2015/08/03/e03ca5a0-3956-460f-aabf-fb069fd49244/ENCFF364RIG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF610IWA bigWig bigWig signal of unique reads dm3 ENCSR227MZM Control ChIP-seq /fly-donors/ENCDO353WZO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40783/'], '@type': ['Target', 'Item'], 'name': 'Hr83-dmelanogaster', 'label': 'Hr83', '@id': '/targets/Hr83-dmelanogaster/', 'title': 'Hr83 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e93f54c-373d-484f-9680-da9099a597a5', 'status': 'released'} dm3 3R 2166787 2188721 DNA 2016-07-06 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF364RIG/ 14965427 Kevin White, UChicago d59c24975fe0254e8bde54774064b739 https://www.encodeproject.org/files/ENCFF610IWA/@@download/ENCFF610IWA.bigWig released s3://encode-public/2015/10/06/2bda4171-fee0-46d1-b1b2-a9b10c7f4ea1/ENCFF610IWA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF184VEX bigWig bigWig read-depth normalized signal dm3 ENCSR227MZM Control ChIP-seq /fly-donors/ENCDO353WZO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40783/'], '@type': ['Target', 'Item'], 'name': 'Hr83-dmelanogaster', 'label': 'Hr83', '@id': '/targets/Hr83-dmelanogaster/', 'title': 'Hr83 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e93f54c-373d-484f-9680-da9099a597a5', 'status': 'released'} dm3 3R 2166787 2188721 DNA 2016-07-06 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF364RIG/ 14961282 Kevin White, UChicago 5429c7dc37f119990595aa25236bea65 https://www.encodeproject.org/files/ENCFF184VEX/@@download/ENCFF184VEX.bigWig released s3://encode-public/2015/10/06/8df87ce2-82f3-481f-9ead-29c958e671b0/ENCFF184VEX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF110IRS bam bam alignments dm6 ENCSR227MZM Control ChIP-seq /fly-donors/ENCDO353WZO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40783/'], '@type': ['Target', 'Item'], 'name': 'Hr83-dmelanogaster', 'label': 'Hr83', '@id': '/targets/Hr83-dmelanogaster/', 'title': 'Hr83 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e93f54c-373d-484f-9680-da9099a597a5', 'status': 'released'} dm3 3R 2166787 2188721 DNA 2016-07-06 modERN sonication (Bioruptor generic) 175-250 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF771RXR/ 353641066 Kevin White, UChicago 8baa22e7a9fb9960c01f4e4c90910b90 https://www.encodeproject.org/files/ENCFF110IRS/@@download/ENCFF110IRS.bam released s3://encode-public/2016/04/21/915a13a8-3024-4c74-964b-7fce50a07f07/ENCFF110IRS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF735TSA bigWig bigWig read-depth normalized signal dm6 ENCSR227MZM Control ChIP-seq /fly-donors/ENCDO353WZO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40783/'], '@type': ['Target', 'Item'], 'name': 'Hr83-dmelanogaster', 'label': 'Hr83', '@id': '/targets/Hr83-dmelanogaster/', 'title': 'Hr83 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e93f54c-373d-484f-9680-da9099a597a5', 'status': 'released'} dm3 3R 2166787 2188721 DNA 2016-07-06 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF110IRS/ 16955428 Kevin White, UChicago 2bd894ce62521158f8fed6384d4a6707 https://www.encodeproject.org/files/ENCFF735TSA/@@download/ENCFF735TSA.bigWig released s3://encode-public/2016/06/21/366cfacd-b75f-432b-b778-5f861e55a1b1/ENCFF735TSA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF214LBZ bigWig bigWig signal of unique reads dm6 ENCSR227MZM Control ChIP-seq /fly-donors/ENCDO353WZO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40783/'], '@type': ['Target', 'Item'], 'name': 'Hr83-dmelanogaster', 'label': 'Hr83', '@id': '/targets/Hr83-dmelanogaster/', 'title': 'Hr83 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e93f54c-373d-484f-9680-da9099a597a5', 'status': 'released'} dm3 3R 2166787 2188721 DNA 2016-07-06 modERN sonication (Bioruptor generic) 175-250 1 1_1 /files/ENCFF110IRS/ 16954033 Kevin White, UChicago 6a20be31fb8e227a567e2edbd3c1e5aa https://www.encodeproject.org/files/ENCFF214LBZ/@@download/ENCFF214LBZ.bigWig released s3://encode-public/2016/06/21/46c2f992-c2ac-41a5-98d0-8fe28a2c2684/ENCFF214LBZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF513SLU fastq fastq reads ENCSR159AMP Control ChIP-seq /fly-donors/ENCDO402LXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36678/'], '@type': ['Target', 'Item'], 'name': 'chn-dmelanogaster', 'label': 'chn', '@id': '/targets/chn-dmelanogaster/', 'title': 'chn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0c6e9dde-b8ed-4c4a-88e6-ce75c755167e', 'status': 'released'} dm3 2R 10935437 11033422 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 481407436 Kevin White, UChicago a4c7e4bfa6685599cb09703bb5e9292a https://www.encodeproject.org/files/ENCFF513SLU/@@download/ENCFF513SLU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/bac80a1d-35cd-4795-abca-430f33fb445e/ENCFF513SLU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF387UVU bam bam alignments dm3 ENCSR159AMP Control ChIP-seq /fly-donors/ENCDO402LXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36678/'], '@type': ['Target', 'Item'], 'name': 'chn-dmelanogaster', 'label': 'chn', '@id': '/targets/chn-dmelanogaster/', 'title': 'chn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0c6e9dde-b8ed-4c4a-88e6-ce75c755167e', 'status': 'released'} dm3 2R 10935437 11033422 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF513SLU/ 708809256 Kevin White, UChicago b39b91def7bfcad13d92b94cf8b5f0f0 https://www.encodeproject.org/files/ENCFF387UVU/@@download/ENCFF387UVU.bam released s3://encode-public/2015/08/05/512535a1-61c8-4a4b-999c-0dc81413bde2/ENCFF387UVU.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF074EMU bigWig bigWig signal of unique reads dm3 ENCSR159AMP Control ChIP-seq /fly-donors/ENCDO402LXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36678/'], '@type': ['Target', 'Item'], 'name': 'chn-dmelanogaster', 'label': 'chn', '@id': '/targets/chn-dmelanogaster/', 'title': 'chn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0c6e9dde-b8ed-4c4a-88e6-ce75c755167e', 'status': 'released'} dm3 2R 10935437 11033422 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF387UVU/ 15318840 Kevin White, UChicago 28b0feaab1932c1231cbf9b2afb678f1 https://www.encodeproject.org/files/ENCFF074EMU/@@download/ENCFF074EMU.bigWig released s3://encode-public/2015/10/05/bbf1e100-2dae-4bb4-9788-eda97319851d/ENCFF074EMU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF091IYZ bigWig bigWig read-depth normalized signal dm3 ENCSR159AMP Control ChIP-seq /fly-donors/ENCDO402LXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36678/'], '@type': ['Target', 'Item'], 'name': 'chn-dmelanogaster', 'label': 'chn', '@id': '/targets/chn-dmelanogaster/', 'title': 'chn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0c6e9dde-b8ed-4c4a-88e6-ce75c755167e', 'status': 'released'} dm3 2R 10935437 11033422 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF387UVU/ 15357276 Kevin White, UChicago 9c486c9e992ef0b0afb6a67a6aea9da5 https://www.encodeproject.org/files/ENCFF091IYZ/@@download/ENCFF091IYZ.bigWig released s3://encode-public/2015/10/05/a0fa175a-08bb-4e20-95a5-ccef5383679b/ENCFF091IYZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF653NQS bam bam alignments dm6 ENCSR159AMP Control ChIP-seq /fly-donors/ENCDO402LXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36678/'], '@type': ['Target', 'Item'], 'name': 'chn-dmelanogaster', 'label': 'chn', '@id': '/targets/chn-dmelanogaster/', 'title': 'chn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0c6e9dde-b8ed-4c4a-88e6-ce75c755167e', 'status': 'released'} dm3 2R 10935437 11033422 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF513SLU/ 704248720 Kevin White, UChicago 05f53e8e4c693979ce7ea1e00db4e368 https://www.encodeproject.org/files/ENCFF653NQS/@@download/ENCFF653NQS.bam released s3://encode-public/2016/04/21/1e5e0be8-9518-43ea-951e-7b72c22c3296/ENCFF653NQS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF275STW bigWig bigWig signal of unique reads dm6 ENCSR159AMP Control ChIP-seq /fly-donors/ENCDO402LXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36678/'], '@type': ['Target', 'Item'], 'name': 'chn-dmelanogaster', 'label': 'chn', '@id': '/targets/chn-dmelanogaster/', 'title': 'chn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0c6e9dde-b8ed-4c4a-88e6-ce75c755167e', 'status': 'released'} dm3 2R 10935437 11033422 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF653NQS/ 17440633 Kevin White, UChicago 75f7218ab9034062676f3c92b2a7fa28 https://www.encodeproject.org/files/ENCFF275STW/@@download/ENCFF275STW.bigWig released s3://encode-public/2016/06/20/f1934478-2207-4805-9271-c673890e17f4/ENCFF275STW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF509XVZ bigWig bigWig read-depth normalized signal dm6 ENCSR159AMP Control ChIP-seq /fly-donors/ENCDO402LXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36678/'], '@type': ['Target', 'Item'], 'name': 'chn-dmelanogaster', 'label': 'chn', '@id': '/targets/chn-dmelanogaster/', 'title': 'chn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0c6e9dde-b8ed-4c4a-88e6-ce75c755167e', 'status': 'released'} dm3 2R 10935437 11033422 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF653NQS/ 17479989 Kevin White, UChicago c8bc830df71f85cd40ed414cbb247f62 https://www.encodeproject.org/files/ENCFF509XVZ/@@download/ENCFF509XVZ.bigWig released s3://encode-public/2016/06/20/3d4e8387-286e-4349-a2b5-52bbfb33d286/ENCFF509XVZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF197BDN fastq fastq reads ENCSR982SZZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1031041627 Richard Myers, HAIB fd48deac42175f8890a6e4c39b71144f SRA:SRR5112363 https://www.encodeproject.org/files/ENCFF197BDN/@@download/ENCFF197BDN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/e0a5a759-ffbd-4fb5-b0e0-99bd3df874ae/ENCFF197BDN.fastq.gz ENCFF717QTX bam bam unfiltered alignments mm10 ENCSR982SZZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF197BDN/ 1140720746 ENCODE Processing Pipeline 7fbf4fc7229bbba2bc9229fc138bb17b https://www.encodeproject.org/files/ENCFF717QTX/@@download/ENCFF717QTX.bam released s3://encode-public/2016/05/20/e070b43e-afd6-4d9f-a4c6-cd244b6eb6d6/ENCFF717QTX.bam ENCODE3 mm10 archived ENCFF352PVF bam bam alignments mm10 ENCSR982SZZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF197BDN/ 832494382 ENCODE Processing Pipeline 53f26a715a0db2a1e033c6387b05ced7 https://www.encodeproject.org/files/ENCFF352PVF/@@download/ENCFF352PVF.bam released s3://encode-public/2016/05/20/d4014919-8def-411b-ad96-dbda173e3d82/ENCFF352PVF.bam ENCODE3 mm10 archived ENCFF373DOG bam bam unfiltered alignments mm10 ENCSR982SZZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF197BDN/ 1138253076 ENCODE Processing Pipeline 26d78ddd3a039881437fda9e5546c80d https://www.encodeproject.org/files/ENCFF373DOG/@@download/ENCFF373DOG.bam released s3://encode-public/2020/11/06/7bd92e4b-bfc3-49d4-a17d-7e34f2308da1/ENCFF373DOG.bam ENCODE4 v1.6.1 mm10 released ENCFF440SNW bam bam alignments mm10 ENCSR982SZZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF197BDN/ 854566389 ENCODE Processing Pipeline 190d385e939a03a9ad71c3ee6495713f https://www.encodeproject.org/files/ENCFF440SNW/@@download/ENCFF440SNW.bam released s3://encode-public/2020/11/06/10b5fc1c-9499-4dd4-8402-62d4058b2d23/ENCFF440SNW.bam ENCODE4 v1.6.1 mm10 released ENCFF263KAK bam bam unfiltered alignments hg19 ENCSR785WMC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF090NGH/, /files/ENCFF807MUK/ 1433523156 ENCODE Processing Pipeline db3a5435e758e84085b7b96faf0d8418 https://www.encodeproject.org/files/ENCFF263KAK/@@download/ENCFF263KAK.bam released s3://encode-public/2018/02/21/e295305b-d887-49ae-9655-3ee6913b4ce4/ENCFF263KAK.bam ENCODE3 hg19 archived ENCFF090NGH fastq fastq reads ENCSR785WMC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1327777298 Richard Myers, HAIB 512f399dc74ff9e9df87f0d16e79a815 SRA:SRR5339304 https://www.encodeproject.org/files/ENCFF090NGH/@@download/ENCFF090NGH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/251b6aa1-05cb-4296-a2cf-f77592827245/ENCFF090NGH.fastq.gz ENCFF445QVI bam bam alignments hg19 ENCSR785WMC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF090NGH/, /files/ENCFF807MUK/ 1112489165 ENCODE Processing Pipeline e7dead3059f139499b6b9697d956700e https://www.encodeproject.org/files/ENCFF445QVI/@@download/ENCFF445QVI.bam released s3://encode-public/2016/01/14/53eebb9e-abc3-44f4-a831-ecfabf9c20f2/ENCFF445QVI.bam ENCODE3 hg19 archived ENCFF470ULU bam bam unfiltered alignments GRCh38 ENCSR785WMC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF090NGH/, /files/ENCFF643CGH/ 1436524649 ENCODE Processing Pipeline 54de4938450ac4332adff8ddbc393c77 https://www.encodeproject.org/files/ENCFF470ULU/@@download/ENCFF470ULU.bam released s3://encode-public/2016/05/06/2e08a313-0111-4bc5-89c0-21e1e47b5780/ENCFF470ULU.bam ENCODE3 GRCh38 archived ENCFF290EGQ bam bam alignments GRCh38 ENCSR785WMC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF090NGH/, /files/ENCFF643CGH/ 1117488640 ENCODE Processing Pipeline f90ac55be3f095edb2f8b3b4af7796e3 https://www.encodeproject.org/files/ENCFF290EGQ/@@download/ENCFF290EGQ.bam released s3://encode-public/2016/05/06/87113a0a-1942-46bb-839b-72d879294f0c/ENCFF290EGQ.bam ENCODE3 GRCh38 archived ENCFF535PRB bam bam unfiltered alignments GRCh38 ENCSR785WMC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF090NGH/ 1426176148 ENCODE Processing Pipeline 611f1b3dc8e83869ea21bea3e4f15814 https://www.encodeproject.org/files/ENCFF535PRB/@@download/ENCFF535PRB.bam released s3://encode-public/2020/06/24/d4acc328-46fa-4e0e-b2ab-a91125faaf73/ENCFF535PRB.bam ENCODE4 GRCh38 released ENCFF116KZS bam bam alignments GRCh38 ENCSR785WMC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF090NGH/ 1171687906 ENCODE Processing Pipeline c992dde70fbce4430a71842b2310980f https://www.encodeproject.org/files/ENCFF116KZS/@@download/ENCFF116KZS.bam released s3://encode-public/2020/06/24/d89d9596-e519-437f-92d6-04bf03fcc695/ENCFF116KZS.bam ENCODE4 GRCh38 released ENCFF634KHZ fastq fastq reads ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 568842580 Tim Reddy, Duke 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617306876 Tim Reddy, Duke 563c4e9e11c6884375cc132e9a349feb SRA:SRR5093400 https://www.encodeproject.org/files/ENCFF038ADB/@@download/ENCFF038ADB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/0bedd09b-ee9a-4262-bfc1-237816d8b90d/ENCFF038ADB.fastq.gz ENCFF075DHB bam bam alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF038ADB/ 690371939 Tim Reddy, Duke 9f2316c312a51cfc11a3e26870e2c0a9 https://www.encodeproject.org/files/ENCFF075DHB/@@download/ENCFF075DHB.bam released s3://encode-public/2016/05/31/c1693938-5240-493e-be4c-c397477d649c/ENCFF075DHB.bam Lab custom GRCh38 archived ENCFF850HHB bam bam alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF634KHZ/ 620827343 Tim Reddy, Duke 524e678076ad6314e258cf6747770815 https://www.encodeproject.org/files/ENCFF850HHB/@@download/ENCFF850HHB.bam released s3://encode-public/2016/05/31/901bee66-0199-42fe-bf32-4e39540fa059/ENCFF850HHB.bam Lab custom GRCh38 archived ENCFF089SRL bam bam alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF163PSC/ 854817307 Tim Reddy, Duke a48847e703a5cf1ea0c9dceb336d4b31 https://www.encodeproject.org/files/ENCFF089SRL/@@download/ENCFF089SRL.bam released s3://encode-public/2016/05/31/2eadf970-29cb-40c6-8a78-41ccb3b131c5/ENCFF089SRL.bam Lab custom GRCh38 archived ENCFF095ULB bam bam alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF634KHZ/, /files/ENCFF110MCL/ 652896423 ENCODE Processing Pipeline a09f9466a97b8328f18a351a9850c3c2 https://www.encodeproject.org/files/ENCFF095ULB/@@download/ENCFF095ULB.bam released s3://encode-public/2020/09/29/281218b1-b4dd-4b9f-8e04-6dad80481a98/ENCFF095ULB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF239FSX bam bam alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF038ADB/, /files/ENCFF110MCL/ 720685893 ENCODE Processing Pipeline 0dca8d4d0264c25f9aabfbc6e21e55d4 https://www.encodeproject.org/files/ENCFF239FSX/@@download/ENCFF239FSX.bam released s3://encode-public/2020/09/29/bf032d06-4a30-4109-bd32-2b909ba17343/ENCFF239FSX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF621TZW bam bam unfiltered alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF634KHZ/, /files/ENCFF110MCL/ 776654069 ENCODE Processing Pipeline 48e981196df6d6c2846c1df8cf63b044 https://www.encodeproject.org/files/ENCFF621TZW/@@download/ENCFF621TZW.bam released s3://encode-public/2020/09/29/6f2cb0a8-39ec-4f88-b306-edea4d6c9467/ENCFF621TZW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF986JBG bam bam unfiltered alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF038ADB/, /files/ENCFF110MCL/ 849956026 ENCODE Processing Pipeline da15ec8bac1327be42b91476a2e62c97 https://www.encodeproject.org/files/ENCFF986JBG/@@download/ENCFF986JBG.bam released s3://encode-public/2020/09/29/413fd0a5-6c09-4b50-9394-3a58516fed1b/ENCFF986JBG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF965AIE bam bam unfiltered alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF163PSC/ 1095490235 ENCODE Processing Pipeline bca5d339fca453a771f1a3c30464952c https://www.encodeproject.org/files/ENCFF965AIE/@@download/ENCFF965AIE.bam released s3://encode-public/2020/09/29/80b2f5f7-636b-4e78-a261-c51f1cf75941/ENCFF965AIE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF147MHR bam bam alignments GRCh38 ENCSR317VER Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF163PSC/ 894894262 ENCODE Processing Pipeline cce11f8a4215ae5315f4785d8f98e501 https://www.encodeproject.org/files/ENCFF147MHR/@@download/ENCFF147MHR.bam released s3://encode-public/2020/09/29/bddf1839-593e-4e25-a7bf-6fb91eacc1c0/ENCFF147MHR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF387CTY fastq fastq reads ENCSR989MAT Control ChIP-seq /fly-donors/ENCDO823LMN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33759/'], '@type': ['Target', 'Item'], 'name': 'vri-dmelanogaster', 'label': 'vri', '@id': '/targets/vri-dmelanogaster/', 'title': 'vri (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '30e4a4d5-155e-4db9-a07b-ba3a9e05b652', 'status': 'released'} dm3 2L 5238541 5317575 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 786119454 Kevin White, UChicago 1d8870b32dc6f649ea4839e72a068166 https://www.encodeproject.org/files/ENCFF387CTY/@@download/ENCFF387CTY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/75678d6a-eb05-4d88-a421-754652532dca/ENCFF387CTY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF657PHA bam bam alignments dm3 ENCSR989MAT Control ChIP-seq /fly-donors/ENCDO823LMN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33759/'], '@type': ['Target', 'Item'], 'name': 'vri-dmelanogaster', 'label': 'vri', '@id': '/targets/vri-dmelanogaster/', 'title': 'vri (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '30e4a4d5-155e-4db9-a07b-ba3a9e05b652', 'status': 'released'} dm3 2L 5238541 5317575 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF387CTY/ 1129341654 Kevin White, UChicago 3bfa9b85de80e2c9c04afd57a8c9ca53 https://www.encodeproject.org/files/ENCFF657PHA/@@download/ENCFF657PHA.bam released s3://encode-public/2015/08/03/6d268577-65a9-437b-9a2f-a982ab29b0fd/ENCFF657PHA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF964LHN bigWig bigWig read-depth normalized signal dm3 ENCSR989MAT Control ChIP-seq /fly-donors/ENCDO823LMN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33759/'], '@type': ['Target', 'Item'], 'name': 'vri-dmelanogaster', 'label': 'vri', '@id': '/targets/vri-dmelanogaster/', 'title': 'vri (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '30e4a4d5-155e-4db9-a07b-ba3a9e05b652', 'status': 'released'} dm3 2L 5238541 5317575 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF657PHA/ 15200748 Kevin White, UChicago a31180ac62c74923183ba3f1eee89e09 https://www.encodeproject.org/files/ENCFF964LHN/@@download/ENCFF964LHN.bigWig released s3://encode-public/2015/10/05/c26203d6-db22-40ff-bad3-5e5f437bafb7/ENCFF964LHN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF318UFT bigWig bigWig signal of unique reads dm3 ENCSR989MAT Control ChIP-seq /fly-donors/ENCDO823LMN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33759/'], '@type': ['Target', 'Item'], 'name': 'vri-dmelanogaster', 'label': 'vri', '@id': '/targets/vri-dmelanogaster/', 'title': 'vri (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '30e4a4d5-155e-4db9-a07b-ba3a9e05b652', 'status': 'released'} dm3 2L 5238541 5317575 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF657PHA/ 15198534 Kevin White, UChicago 6ad625856cdd8bfcba2ef84b37282c2d https://www.encodeproject.org/files/ENCFF318UFT/@@download/ENCFF318UFT.bigWig released s3://encode-public/2015/10/05/26a53019-81e4-4c67-a551-f16a7d1ba2dc/ENCFF318UFT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF469FSP bam bam alignments dm6 ENCSR989MAT Control ChIP-seq /fly-donors/ENCDO823LMN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33759/'], '@type': ['Target', 'Item'], 'name': 'vri-dmelanogaster', 'label': 'vri', '@id': '/targets/vri-dmelanogaster/', 'title': 'vri (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '30e4a4d5-155e-4db9-a07b-ba3a9e05b652', 'status': 'released'} dm3 2L 5238541 5317575 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF387CTY/ 1121317718 Kevin White, UChicago 66de0fd658e7fe58c50ab9aee23f966e https://www.encodeproject.org/files/ENCFF469FSP/@@download/ENCFF469FSP.bam released s3://encode-public/2016/04/22/e542e0a9-e3fb-4cd2-bea1-3c9e11a29b91/ENCFF469FSP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF325AQW bigWig bigWig signal of unique reads dm6 ENCSR989MAT Control ChIP-seq /fly-donors/ENCDO823LMN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33759/'], '@type': ['Target', 'Item'], 'name': 'vri-dmelanogaster', 'label': 'vri', '@id': '/targets/vri-dmelanogaster/', 'title': 'vri (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '30e4a4d5-155e-4db9-a07b-ba3a9e05b652', 'status': 'released'} dm3 2L 5238541 5317575 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF469FSP/ 17305186 Kevin White, UChicago 6d8e6a73653d2a3ab38cb3f525d5db93 https://www.encodeproject.org/files/ENCFF325AQW/@@download/ENCFF325AQW.bigWig released s3://encode-public/2016/06/21/73b29535-595b-4d04-8199-b496118985b8/ENCFF325AQW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF444AEA bigWig bigWig read-depth normalized signal dm6 ENCSR989MAT Control ChIP-seq /fly-donors/ENCDO823LMN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33759/'], '@type': ['Target', 'Item'], 'name': 'vri-dmelanogaster', 'label': 'vri', '@id': '/targets/vri-dmelanogaster/', 'title': 'vri (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '30e4a4d5-155e-4db9-a07b-ba3a9e05b652', 'status': 'released'} dm3 2L 5238541 5317575 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF469FSP/ 17310784 Kevin White, UChicago 5efbff2a2aa697fb3de4e42cceb2839a https://www.encodeproject.org/files/ENCFF444AEA/@@download/ENCFF444AEA.bigWig released s3://encode-public/2016/06/21/d6df6ae7-18c0-4d41-8315-a5bbdd3875eb/ENCFF444AEA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF394CKS fastq fastq reads ENCSR892AAQ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 722014352 Kevin White, UChicago 34c034ad2e5b51978b5df014c6452a09 https://www.encodeproject.org/files/ENCFF394CKS/@@download/ENCFF394CKS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/09/01/0ffe1e70-0743-4786-aaa1-f9e38f5383b2/ENCFF394CKS.fastq.gz ENCFF629EPV bam bam alignments dm3 ENCSR892AAQ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF394CKS/, /files/ENCFF059UHX/ 902573070 Kevin White, UChicago 960d2e614e1de9d37f844363d1240298 https://www.encodeproject.org/files/ENCFF629EPV/@@download/ENCFF629EPV.bam released s3://encode-public/2017/01/09/79fe0528-dd93-46ba-8716-f6847196b7c6/ENCFF629EPV.bam Lab custom dm3 archived ENCFF791ILY bigWig bigWig read-depth normalized signal dm3 ENCSR892AAQ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF629EPV/ 15356020 Kevin White, UChicago ae6d0d4298b13fb94567c1b0c86b6b12 https://www.encodeproject.org/files/ENCFF791ILY/@@download/ENCFF791ILY.bigWig released s3://encode-public/2017/01/09/34ef9718-0ccd-49f5-815e-378e2e226ae8/ENCFF791ILY.bigWig Lab custom dm3 archived ENCFF187VKF bigWig bigWig read-depth normalized signal dm6 ENCSR892AAQ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF602NWK/ 17431321 Kevin White, UChicago 6867b059fecb95bbaad6200fb4c4a0e3 https://www.encodeproject.org/files/ENCFF187VKF/@@download/ENCFF187VKF.bigWig released s3://encode-public/2017/01/09/25c22d7c-b58e-468e-9db4-8bb780a9fe8f/ENCFF187VKF.bigWig Lab custom dm6 released ENCFF166OVF bigWig bigWig signal of unique reads dm6 ENCSR892AAQ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF602NWK/ 17406348 Kevin White, UChicago 27074eaaa5b81b965c20283b968ff75a https://www.encodeproject.org/files/ENCFF166OVF/@@download/ENCFF166OVF.bigWig released s3://encode-public/2017/01/09/7755c10a-2746-458a-9000-c49639785937/ENCFF166OVF.bigWig Lab custom dm6 released ENCFF602NWK bam bam alignments dm6 ENCSR892AAQ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF394CKS/, /files/ENCFF479RCH/ 895870085 Kevin White, UChicago 20b78bd4516b3770f004f18f4dbbd147 https://www.encodeproject.org/files/ENCFF602NWK/@@download/ENCFF602NWK.bam released s3://encode-public/2017/01/09/3ece2795-d59b-457b-ac12-628fd83340c3/ENCFF602NWK.bam Lab custom dm6 released ENCFF475UXW bigWig bigWig signal of unique reads dm3 ENCSR892AAQ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF629EPV/ 15346623 Kevin White, UChicago 15eb9cbaf4a26e49b26b60e1e3186c4d https://www.encodeproject.org/files/ENCFF475UXW/@@download/ENCFF475UXW.bigWig released s3://encode-public/2017/01/09/88bd18d9-d0a4-4a1f-93db-5fcb83280884/ENCFF475UXW.bigWig Lab custom dm3 archived ENCFF508YTS fastq fastq reads ENCSR830VBI Control ChIP-seq /fly-donors/ENCDO822BVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43924/'], '@type': ['Target', 'Item'], 'name': 'jim-dmelanogaster', 'label': 'jim', '@id': '/targets/jim-dmelanogaster/', 'title': 'jim (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '36e8c478-b876-464c-bcc1-134514050325', 'status': 'released'} dm3 3L 22742092 22833481 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-300 1 1_1 50 single-ended 472719779 Kevin White, UChicago 1ab6c1eda306aafec0ddfdd34efa2a90 https://www.encodeproject.org/files/ENCFF508YTS/@@download/ENCFF508YTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF967YPA/ released s3://encode-public/2015/07/23/31002d8b-178b-405d-a01f-7ed92f7a56dd/ENCFF508YTS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF367FWL bam bam alignments dm3 ENCSR830VBI Control ChIP-seq /fly-donors/ENCDO822BVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43924/'], '@type': ['Target', 'Item'], 'name': 'jim-dmelanogaster', 'label': 'jim', '@id': '/targets/jim-dmelanogaster/', 'title': 'jim (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '36e8c478-b876-464c-bcc1-134514050325', 'status': 'released'} dm3 3L 22742092 22833481 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-300 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF508YTS/ 638859847 Kevin White, UChicago fb64e9fe63d628dc33ba3eb4a07834b9 https://www.encodeproject.org/files/ENCFF367FWL/@@download/ENCFF367FWL.bam released s3://encode-public/2015/08/03/bfb5afc2-ee49-4088-83a1-b57cc02d8a1f/ENCFF367FWL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF946HHD bigWig bigWig signal of unique reads dm3 ENCSR830VBI Control ChIP-seq /fly-donors/ENCDO822BVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43924/'], '@type': ['Target', 'Item'], 'name': 'jim-dmelanogaster', 'label': 'jim', '@id': '/targets/jim-dmelanogaster/', 'title': 'jim (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '36e8c478-b876-464c-bcc1-134514050325', 'status': 'released'} dm3 3L 22742092 22833481 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-300 1 1_1 /files/ENCFF367FWL/ 15205852 Kevin White, UChicago 2fe15bf3a7ac0ffb49d3bbcb720e566c https://www.encodeproject.org/files/ENCFF946HHD/@@download/ENCFF946HHD.bigWig released s3://encode-public/2015/10/06/8763733e-6850-4cf4-b5d3-520bed2a1a59/ENCFF946HHD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF784ZFD bigWig bigWig read-depth normalized signal dm3 ENCSR830VBI Control ChIP-seq /fly-donors/ENCDO822BVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43924/'], '@type': ['Target', 'Item'], 'name': 'jim-dmelanogaster', 'label': 'jim', '@id': '/targets/jim-dmelanogaster/', 'title': 'jim (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '36e8c478-b876-464c-bcc1-134514050325', 'status': 'released'} dm3 3L 22742092 22833481 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-300 1 1_1 /files/ENCFF367FWL/ 15132897 Kevin White, UChicago 601b47441f431d85ec1a76aa2da06ecf https://www.encodeproject.org/files/ENCFF784ZFD/@@download/ENCFF784ZFD.bigWig released s3://encode-public/2015/10/06/260ee85d-4871-40ea-ae61-0bd82a524b1d/ENCFF784ZFD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF022PNC bam bam alignments dm6 ENCSR830VBI Control ChIP-seq /fly-donors/ENCDO822BVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43924/'], '@type': ['Target', 'Item'], 'name': 'jim-dmelanogaster', 'label': 'jim', '@id': '/targets/jim-dmelanogaster/', 'title': 'jim (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '36e8c478-b876-464c-bcc1-134514050325', 'status': 'released'} dm3 3L 22742092 22833481 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-300 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF508YTS/ 637812069 Kevin White, UChicago b2042cd667a578f6ad50baa1b083b8b5 https://www.encodeproject.org/files/ENCFF022PNC/@@download/ENCFF022PNC.bam released s3://encode-public/2016/04/21/233738a8-79f1-4abe-a6b5-cd25a14959c5/ENCFF022PNC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF637WHG bigWig bigWig signal of unique reads dm6 ENCSR830VBI Control ChIP-seq /fly-donors/ENCDO822BVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43924/'], '@type': ['Target', 'Item'], 'name': 'jim-dmelanogaster', 'label': 'jim', '@id': '/targets/jim-dmelanogaster/', 'title': 'jim (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '36e8c478-b876-464c-bcc1-134514050325', 'status': 'released'} dm3 3L 22742092 22833481 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-300 1 1_1 /files/ENCFF022PNC/ 17274370 Kevin White, UChicago 2df425467623cc7b39afc3bf511cf894 https://www.encodeproject.org/files/ENCFF637WHG/@@download/ENCFF637WHG.bigWig released s3://encode-public/2016/06/21/720bc92a-3e67-4462-b7f6-b127e0720196/ENCFF637WHG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF376XHX bigWig bigWig read-depth normalized signal dm6 ENCSR830VBI Control ChIP-seq /fly-donors/ENCDO822BVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43924/'], '@type': ['Target', 'Item'], 'name': 'jim-dmelanogaster', 'label': 'jim', '@id': '/targets/jim-dmelanogaster/', 'title': 'jim (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '36e8c478-b876-464c-bcc1-134514050325', 'status': 'released'} dm3 3L 22742092 22833481 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-300 1 1_1 /files/ENCFF022PNC/ 17171253 Kevin White, UChicago 98f61bf6188e7d6206aa35736e9abddb https://www.encodeproject.org/files/ENCFF376XHX/@@download/ENCFF376XHX.bigWig released s3://encode-public/2016/06/21/17f02543-f27e-4230-82e7-31972438c443/ENCFF376XHX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF492ZLW bam bam unfiltered alignments hg19 ENCSR965XFJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF787HQI/ 1039280186 ENCODE Processing Pipeline 1b96d4446bb9041b45c81654fe0bcec8 https://www.encodeproject.org/files/ENCFF492ZLW/@@download/ENCFF492ZLW.bam released s3://encode-public/2018/02/22/4a0d84aa-5ff4-464e-a747-05db71377bc1/ENCFF492ZLW.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF787HQI fastq fastq reads ENCSR965XFJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 931993208 Kevin White, UChicago a8019ff71578f3096e1d77c070664320 SRA:SRR6214104 https://www.encodeproject.org/files/ENCFF787HQI/@@download/ENCFF787HQI.fastq.gz Illumina HiSeq 2500 /files/ENCFF485ZYJ/, /files/ENCFF679OFG/ released s3://encode-public/2016/03/14/cbd398d9-5567-48f7-813c-f5d6fd1a24ff/ENCFF787HQI.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF450MML bam bam alignments hg19 ENCSR965XFJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF787HQI/ 829703790 ENCODE Processing Pipeline bfe5166c816944601112b286770f404c https://www.encodeproject.org/files/ENCFF450MML/@@download/ENCFF450MML.bam released s3://encode-public/2016/04/23/08a57389-2267-4429-a123-f55d267f5f3b/ENCFF450MML.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF877EAV bam bam unfiltered alignments GRCh38 ENCSR965XFJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF787HQI/ 1044185423 ENCODE Processing Pipeline b2a8f8e8adcbb24b28b484bd61dbc2f7 https://www.encodeproject.org/files/ENCFF877EAV/@@download/ENCFF877EAV.bam released s3://encode-public/2016/05/06/311dc8e3-f244-4edd-b2d2-169f131c4061/ENCFF877EAV.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF640BTE bam bam alignments GRCh38 ENCSR965XFJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF787HQI/ 829320282 ENCODE Processing Pipeline e7954663685040a79c00ef64df059893 https://www.encodeproject.org/files/ENCFF640BTE/@@download/ENCFF640BTE.bam released s3://encode-public/2016/05/06/752d0a2a-9508-4396-849e-726017138bce/ENCFF640BTE.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF861ESS bam bam unfiltered alignments GRCh38 ENCSR965XFJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF787HQI/ 1039258337 ENCODE Processing Pipeline fbe62ad255c027d189a575c2ad4b7db4 https://www.encodeproject.org/files/ENCFF861ESS/@@download/ENCFF861ESS.bam released s3://encode-public/2020/10/27/e71e4004-d4af-4f21-95d0-9933f8154434/ENCFF861ESS.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF555ZHK bam bam alignments GRCh38 ENCSR965XFJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF787HQI/ 879634909 ENCODE Processing Pipeline 38901ef3f71d46685e9a8e1dbcb5b0da https://www.encodeproject.org/files/ENCFF555ZHK/@@download/ENCFF555ZHK.bam released s3://encode-public/2020/10/27/1e7e6b0c-5708-49da-a7aa-044f0b66dda3/ENCFF555ZHK.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF184AER fastq fastq reads ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 597081195 Tim Reddy, Duke 8b8f523ac05ae87453bc8894f5c3b88a SRA:SRR5093313 https://www.encodeproject.org/files/ENCFF184AER/@@download/ENCFF184AER.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/164d9c7e-6992-4cca-b593-7016f0e89197/ENCFF184AER.fastq.gz ENCFF535VCQ fastq fastq reads ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 635128578 Tim Reddy, Duke 2b6648714899e64caf2424b4106f0b2a SRA:SRR5093312 https://www.encodeproject.org/files/ENCFF535VCQ/@@download/ENCFF535VCQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/980664a1-38ca-4201-83ed-7a62a0a63e2b/ENCFF535VCQ.fastq.gz ENCFF511KUH fastq fastq reads ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 838240126 Tim Reddy, Duke d6438bf89009ae0c50a61ca0cb19244e SRA:SRR5093314 https://www.encodeproject.org/files/ENCFF511KUH/@@download/ENCFF511KUH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/3ceedc92-7aff-4939-a39c-44f346aad0df/ENCFF511KUH.fastq.gz ENCFF634ULC bam bam alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF535VCQ/ 539309578 Tim Reddy, Duke fe073bd05f62658c10e40007a1545465 https://www.encodeproject.org/files/ENCFF634ULC/@@download/ENCFF634ULC.bam released s3://encode-public/2016/10/19/7546b609-261e-48fe-aef5-4ce03ae12948/ENCFF634ULC.bam Lab custom GRCh38 archived ENCFF632UPH bam bam alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF511KUH/ 918724089 Tim Reddy, Duke b07de1925993683f5ae802380e62ecf6 https://www.encodeproject.org/files/ENCFF632UPH/@@download/ENCFF632UPH.bam released s3://encode-public/2016/10/19/eeb79327-60bb-45f2-9add-33edb229f83b/ENCFF632UPH.bam Lab custom GRCh38 archived ENCFF368OTV bam bam alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF184AER/ 663516328 Tim Reddy, Duke 55e4c11d70a660948e0ac320b31e1e68 https://www.encodeproject.org/files/ENCFF368OTV/@@download/ENCFF368OTV.bam released s3://encode-public/2016/10/19/0bc90b01-fa4a-44c1-bff4-685f4083f687/ENCFF368OTV.bam Lab custom GRCh38 archived ENCFF400EVF bam bam alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF511KUH/ 963574585 ENCODE Processing Pipeline 8229341a86753165dd5963808d9903c6 https://www.encodeproject.org/files/ENCFF400EVF/@@download/ENCFF400EVF.bam released s3://encode-public/2020/11/13/a481d95c-c3c8-4eb2-8f5a-2fcef474ca5d/ENCFF400EVF.bam ENCODE4 v1.6.1 GRCh38 released ENCFF983AZD bam bam unfiltered alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF511KUH/ 1134499215 ENCODE Processing Pipeline 74813977554901d176ff654b09bc7e85 https://www.encodeproject.org/files/ENCFF983AZD/@@download/ENCFF983AZD.bam released s3://encode-public/2020/11/13/968da26c-201f-49bc-b5ed-92bb5f021b96/ENCFF983AZD.bam ENCODE4 v1.6.1 GRCh38 released ENCFF537IPS bam bam alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF535VCQ/ 567601847 ENCODE Processing Pipeline 2c8dd8e9ec1296aa7cfc92871a440c52 https://www.encodeproject.org/files/ENCFF537IPS/@@download/ENCFF537IPS.bam released s3://encode-public/2020/11/13/a36190b9-3b90-4096-a731-ea67902a26b9/ENCFF537IPS.bam ENCODE4 v1.6.1 GRCh38 released ENCFF868XNT bam bam unfiltered alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF184AER/, /files/ENCFF110MCL/ 817059517 ENCODE Processing Pipeline f322398da22f2d40e43c93bf66f315cd https://www.encodeproject.org/files/ENCFF868XNT/@@download/ENCFF868XNT.bam released s3://encode-public/2020/11/13/b0427b75-696a-4a7b-bea1-5ef31a85c18d/ENCFF868XNT.bam ENCODE4 v1.6.1 GRCh38 released ENCFF621EZW bam bam alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF184AER/, /files/ENCFF110MCL/ 693862071 ENCODE Processing Pipeline 1ec6e0cc54271cd31c6c638a344cf365 https://www.encodeproject.org/files/ENCFF621EZW/@@download/ENCFF621EZW.bam released s3://encode-public/2020/11/13/03dca2a7-6c02-4f30-84bd-39b059810bf4/ENCFF621EZW.bam ENCODE4 v1.6.1 GRCh38 released ENCFF664CKW bam bam unfiltered alignments GRCh38 ENCSR147APP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF535VCQ/ 759387361 ENCODE Processing Pipeline 7f016d5d3c45e04335ddd684e5fd8f8e https://www.encodeproject.org/files/ENCFF664CKW/@@download/ENCFF664CKW.bam released s3://encode-public/2020/11/13/a9156d9f-9344-4823-936f-296e47a28bdd/ENCFF664CKW.bam ENCODE4 v1.6.1 GRCh38 released ENCFF419NQI fastq fastq reads ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 829322029 Tim Reddy, Duke 36251a4078467f5e629ca4cddf4f5624 SRA:SRR5092937 https://www.encodeproject.org/files/ENCFF419NQI/@@download/ENCFF419NQI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/974e36b8-dcc5-41f2-b363-9663c24a188b/ENCFF419NQI.fastq.gz ENCFF796UNQ fastq fastq reads ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 626426407 Tim Reddy, Duke 7a3beba0e9237d616aa92127a8440b4f SRA:SRR5092935 https://www.encodeproject.org/files/ENCFF796UNQ/@@download/ENCFF796UNQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/7ff8f672-5af3-4e74-ab4e-b5b433b579ee/ENCFF796UNQ.fastq.gz ENCFF538UDB fastq fastq reads ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 586170937 Tim Reddy, Duke be227f54d7b2559efc6cda25cf7b6d48 SRA:SRR5092936 https://www.encodeproject.org/files/ENCFF538UDB/@@download/ENCFF538UDB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/f38a590f-f054-435c-9606-cd8617ebc63b/ENCFF538UDB.fastq.gz ENCFF047BFP bam bam alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF419NQI/ 909530454 Tim Reddy, Duke 4613398c775c670f71b0fa433430801a https://www.encodeproject.org/files/ENCFF047BFP/@@download/ENCFF047BFP.bam released s3://encode-public/2016/10/19/108607a7-9788-411c-a1a0-4ad57481c5aa/ENCFF047BFP.bam Lab custom GRCh38 archived ENCFF604AYJ bam bam alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF796UNQ/ 713745301 Tim Reddy, Duke 1dc87f15637acc95e035b19b970afa2d https://www.encodeproject.org/files/ENCFF604AYJ/@@download/ENCFF604AYJ.bam released s3://encode-public/2016/10/19/9ff1afee-9746-4fc2-9677-044293aa73a6/ENCFF604AYJ.bam Lab custom GRCh38 archived ENCFF715QTB bam bam alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF538UDB/ 654985001 Tim Reddy, Duke 7c690c09a95a10477833b86560d2877a https://www.encodeproject.org/files/ENCFF715QTB/@@download/ENCFF715QTB.bam released s3://encode-public/2016/10/19/0e1ea0ce-843f-4b7c-8476-62851dd5475b/ENCFF715QTB.bam Lab custom GRCh38 archived ENCFF819KCI bam bam alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF796UNQ/, /files/ENCFF110MCL/ 714481607 ENCODE Processing Pipeline e0f0004101bde97f895a7a79522f301a https://www.encodeproject.org/files/ENCFF819KCI/@@download/ENCFF819KCI.bam released s3://encode-public/2020/11/13/64ea3610-7697-427d-99bf-96260adc8ee1/ENCFF819KCI.bam ENCODE4 v1.6.1 GRCh38 released ENCFF500EVZ bam bam unfiltered alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF419NQI/ 1126490563 ENCODE Processing Pipeline 5aff4b4a734263a0ad89336bab755d6a https://www.encodeproject.org/files/ENCFF500EVZ/@@download/ENCFF500EVZ.bam released s3://encode-public/2020/11/13/bf583406-7382-4b8e-b453-f0a7acb678c2/ENCFF500EVZ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF491SFA bam bam unfiltered alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF538UDB/, /files/ENCFF110MCL/ 807247408 ENCODE Processing Pipeline 8dd33cdbb03f7f2d1fa526468c82a70e https://www.encodeproject.org/files/ENCFF491SFA/@@download/ENCFF491SFA.bam released s3://encode-public/2020/11/13/b2b81876-f9c0-4edb-a898-ed60bd8f8a6f/ENCFF491SFA.bam ENCODE4 v1.6.1 GRCh38 released ENCFF025QOA bam bam unfiltered alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF796UNQ/, /files/ENCFF110MCL/ 895437025 ENCODE Processing Pipeline bbcac1eb1e9b09cae09e4532c7f002f9 https://www.encodeproject.org/files/ENCFF025QOA/@@download/ENCFF025QOA.bam released s3://encode-public/2020/11/13/1d570246-67ff-4e48-a5c4-b2bbcf68bd5b/ENCFF025QOA.bam ENCODE4 v1.6.1 GRCh38 released ENCFF086XSQ bam bam alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF419NQI/ 955711405 ENCODE Processing Pipeline 59ed84d7ca5b6fb9762750fe7d91cf86 https://www.encodeproject.org/files/ENCFF086XSQ/@@download/ENCFF086XSQ.bam released s3://encode-public/2020/11/13/c568ac85-2bb0-42c5-abd2-efa0db9fb9b9/ENCFF086XSQ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF343JHP bam bam alignments GRCh38 ENCSR487EUI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF538UDB/, /files/ENCFF110MCL/ 685490134 ENCODE Processing Pipeline edc700cbd1e9551e97c7de48e2e0093b https://www.encodeproject.org/files/ENCFF343JHP/@@download/ENCFF343JHP.bam released s3://encode-public/2020/11/13/95309ae8-d2c5-4444-b8ff-19ecc6f17a61/ENCFF343JHP.bam ENCODE4 v1.6.1 GRCh38 released ENCFF513VCT fastq fastq reads ENCSR729AWQ Control ChIP-seq /fly-donors/ENCDO476WNT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39095/'], '@type': ['Target', 'Item'], 'name': 'phol-dmelanogaster', 'label': 'phol', '@id': '/targets/phol-dmelanogaster/', 'title': 'phol (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '80cd2b38-142a-46cc-a1a4-eeaedc653d7a', 'status': 'released'} dm3 3L 9438851 9459898 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 732420496 Kevin White, UChicago 75dd7552eae3199db4a9fdca872f1648 https://www.encodeproject.org/files/ENCFF513VCT/@@download/ENCFF513VCT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/b30a291e-20a8-49af-81c5-e912d17c5c49/ENCFF513VCT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF875OSZ bam bam alignments dm6 ENCSR729AWQ Control ChIP-seq /fly-donors/ENCDO476WNT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39095/'], '@type': ['Target', 'Item'], 'name': 'phol-dmelanogaster', 'label': 'phol', '@id': '/targets/phol-dmelanogaster/', 'title': 'phol (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '80cd2b38-142a-46cc-a1a4-eeaedc653d7a', 'status': 'released'} dm3 3L 9438851 9459898 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF513VCT/, /files/ENCFF479RCH/ 992662536 Kevin White, UChicago b66aa48a47ae43122a35ef749fd5eb25 https://www.encodeproject.org/files/ENCFF875OSZ/@@download/ENCFF875OSZ.bam released s3://encode-public/2018/12/07/056a0b99-c1e6-4d9c-80a8-bb4fd14b7b68/ENCFF875OSZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF661FPW bigWig bigWig read-depth normalized signal dm6 ENCSR729AWQ Control ChIP-seq /fly-donors/ENCDO476WNT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39095/'], '@type': ['Target', 'Item'], 'name': 'phol-dmelanogaster', 'label': 'phol', '@id': '/targets/phol-dmelanogaster/', 'title': 'phol (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '80cd2b38-142a-46cc-a1a4-eeaedc653d7a', 'status': 'released'} dm3 3L 9438851 9459898 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF875OSZ/ 17714233 Kevin White, UChicago 766405327c63249f94c1f1d194887461 https://www.encodeproject.org/files/ENCFF661FPW/@@download/ENCFF661FPW.bigWig released s3://encode-public/2018/12/10/cb0b28dc-af23-4b71-8e50-9db0178dca0c/ENCFF661FPW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF339KNI bigWig bigWig signal of unique reads dm6 ENCSR729AWQ Control ChIP-seq /fly-donors/ENCDO476WNT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39095/'], '@type': ['Target', 'Item'], 'name': 'phol-dmelanogaster', 'label': 'phol', '@id': '/targets/phol-dmelanogaster/', 'title': 'phol (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '80cd2b38-142a-46cc-a1a4-eeaedc653d7a', 'status': 'released'} dm3 3L 9438851 9459898 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF875OSZ/ 17693800 Kevin White, UChicago 2b8e87ce0773fa51a09c2ae75cba51ad https://www.encodeproject.org/files/ENCFF339KNI/@@download/ENCFF339KNI.bigWig released s3://encode-public/2018/12/10/63949e80-7ff8-4db3-b50a-e59dab0f1bcd/ENCFF339KNI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF868DTM fastq fastq reads ENCSR636JNU Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 2080671353 Kevin White, UChicago a9c5a9031ee40201cd205469271d6dad https://www.encodeproject.org/files/ENCFF868DTM/@@download/ENCFF868DTM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/23/8b247780-e880-4a43-ba46-7121cb7b59b3/ENCFF868DTM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF700BPT bam bam alignments dm3 ENCSR636JNU Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF868DTM/ 2587719809 Kevin White, UChicago 70b01f58197e093b783d0d04676a3601 https://www.encodeproject.org/files/ENCFF700BPT/@@download/ENCFF700BPT.bam released s3://encode-public/2017/06/18/89e465b0-afe2-49f1-a5e2-7cf69cf160ee/ENCFF700BPT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF117OKJ bam bam alignments dm6 ENCSR636JNU Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF868DTM/ 2582643609 Kevin White, UChicago 15d806fdcbf4f307dc40b2c41940ecae https://www.encodeproject.org/files/ENCFF117OKJ/@@download/ENCFF117OKJ.bam released s3://encode-public/2017/06/28/4618ed75-1dd7-49c5-a328-0f6bd75797f4/ENCFF117OKJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF633XXF bigWig bigWig signal of unique reads dm3 ENCSR636JNU Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF700BPT/ 15808385 Kevin White, UChicago c6e5b278dd5d544d642fb48a4c608f46 https://www.encodeproject.org/files/ENCFF633XXF/@@download/ENCFF633XXF.bigWig released s3://encode-public/2017/06/29/15addaa7-f6cf-48c9-8112-ff6756798dcd/ENCFF633XXF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF732MYM bigWig bigWig read-depth normalized signal dm3 ENCSR636JNU Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF700BPT/ 15761592 Kevin White, UChicago ad698c4491f485c77d6c177f35bce1e8 https://www.encodeproject.org/files/ENCFF732MYM/@@download/ENCFF732MYM.bigWig released s3://encode-public/2017/06/29/5c20dbd9-acbd-475f-a7d1-4a12dbf6f541/ENCFF732MYM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF405LLX bigWig bigWig read-depth normalized signal dm6 ENCSR636JNU Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF117OKJ/ 17841478 Kevin White, UChicago 02d53ca9f56335570be128fdcad496c9 https://www.encodeproject.org/files/ENCFF405LLX/@@download/ENCFF405LLX.bigWig released s3://encode-public/2017/06/30/c7bf3c9c-9a2a-4c5c-bc17-834d14c87784/ENCFF405LLX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF660REF bigWig bigWig signal of unique reads dm6 ENCSR636JNU Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF117OKJ/ 17911999 Kevin White, UChicago a77fda6b0bfb0f151c493736297e05d5 https://www.encodeproject.org/files/ENCFF660REF/@@download/ENCFF660REF.bigWig released s3://encode-public/2017/06/30/16d8b629-c613-44d9-a44c-6aeff84c93f0/ENCFF660REF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF345RCE fastq fastq reads ENCSR103JYD Control ChIP-seq /fly-donors/ENCDO444ZQO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40297/'], '@type': ['Target', 'Item'], 'name': 'Six4-dmelanogaster', 'label': 'Six4', '@id': '/targets/Six4-dmelanogaster/', 'title': 'Six4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2cea2e4-f1c4-438d-85c1-f0c4207cf41c', 'status': 'released'} dm3 3L 20783761 20801717 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 451454431 Kevin White, UChicago 0a588cf9a95027937058f007aa14bca1 https://www.encodeproject.org/files/ENCFF345RCE/@@download/ENCFF345RCE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/f7419c63-0599-415e-b69b-df7074065831/ENCFF345RCE.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF540KDY bam bam alignments dm3 ENCSR103JYD Control ChIP-seq /fly-donors/ENCDO444ZQO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40297/'], '@type': ['Target', 'Item'], 'name': 'Six4-dmelanogaster', 'label': 'Six4', '@id': '/targets/Six4-dmelanogaster/', 'title': 'Six4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2cea2e4-f1c4-438d-85c1-f0c4207cf41c', 'status': 'released'} dm3 3L 20783761 20801717 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF345RCE/, /files/ENCFF059UHX/ 552361197 Kevin White, UChicago 7091cce03d3226af322168c35aeb059b https://www.encodeproject.org/files/ENCFF540KDY/@@download/ENCFF540KDY.bam released s3://encode-public/2016/08/03/28e8b438-f309-4f18-b312-06c508faad9f/ENCFF540KDY.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF400DAX bam bam alignments dm6 ENCSR103JYD Control ChIP-seq /fly-donors/ENCDO444ZQO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40297/'], '@type': ['Target', 'Item'], 'name': 'Six4-dmelanogaster', 'label': 'Six4', '@id': '/targets/Six4-dmelanogaster/', 'title': 'Six4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2cea2e4-f1c4-438d-85c1-f0c4207cf41c', 'status': 'released'} dm3 3L 20783761 20801717 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF345RCE/, /files/ENCFF479RCH/ 549478995 Kevin White, UChicago bf29521329f1f50d3a3bc6520005534d https://www.encodeproject.org/files/ENCFF400DAX/@@download/ENCFF400DAX.bam released s3://encode-public/2016/08/04/04106a7e-6c67-451f-9fe7-a310edde0a43/ENCFF400DAX.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF354IBI bigWig bigWig signal of unique reads dm3 ENCSR103JYD Control ChIP-seq /fly-donors/ENCDO444ZQO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40297/'], '@type': ['Target', 'Item'], 'name': 'Six4-dmelanogaster', 'label': 'Six4', '@id': '/targets/Six4-dmelanogaster/', 'title': 'Six4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2cea2e4-f1c4-438d-85c1-f0c4207cf41c', 'status': 'released'} dm3 3L 20783761 20801717 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF540KDY/ 15298926 Kevin White, UChicago 3854978835574b94c36e1e2fa73ae269 https://www.encodeproject.org/files/ENCFF354IBI/@@download/ENCFF354IBI.bigWig released s3://encode-public/2016/08/04/8d6d8a02-bced-4817-8e9d-15bd5ebe7f63/ENCFF354IBI.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF669ESZ bigWig bigWig read-depth normalized signal dm3 ENCSR103JYD Control ChIP-seq /fly-donors/ENCDO444ZQO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40297/'], '@type': ['Target', 'Item'], 'name': 'Six4-dmelanogaster', 'label': 'Six4', '@id': '/targets/Six4-dmelanogaster/', 'title': 'Six4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2cea2e4-f1c4-438d-85c1-f0c4207cf41c', 'status': 'released'} dm3 3L 20783761 20801717 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF540KDY/ 15209662 Kevin White, UChicago 9b81b1dd73f4cff493a37985128a9796 https://www.encodeproject.org/files/ENCFF669ESZ/@@download/ENCFF669ESZ.bigWig released s3://encode-public/2016/08/04/c3fcaa1d-ca39-4635-ba66-2025212d281a/ENCFF669ESZ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF816ARB bigWig bigWig read-depth normalized signal dm6 ENCSR103JYD Control ChIP-seq /fly-donors/ENCDO444ZQO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40297/'], '@type': ['Target', 'Item'], 'name': 'Six4-dmelanogaster', 'label': 'Six4', '@id': '/targets/Six4-dmelanogaster/', 'title': 'Six4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2cea2e4-f1c4-438d-85c1-f0c4207cf41c', 'status': 'released'} dm3 3L 20783761 20801717 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF400DAX/ 17298740 Kevin White, UChicago 5d3f3d3c3f2f077b67c0eb49a4ae8c66 https://www.encodeproject.org/files/ENCFF816ARB/@@download/ENCFF816ARB.bigWig released s3://encode-public/2016/08/04/2d1a8648-da1e-4ebd-9804-e09b2e14c872/ENCFF816ARB.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF267LVK bigWig bigWig signal of unique reads dm6 ENCSR103JYD Control ChIP-seq /fly-donors/ENCDO444ZQO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40297/'], '@type': ['Target', 'Item'], 'name': 'Six4-dmelanogaster', 'label': 'Six4', '@id': '/targets/Six4-dmelanogaster/', 'title': 'Six4 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2cea2e4-f1c4-438d-85c1-f0c4207cf41c', 'status': 'released'} dm3 3L 20783761 20801717 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF400DAX/ 17421335 Kevin White, UChicago 730179ff1c57f236fa80d2827b5e5a63 https://www.encodeproject.org/files/ENCFF267LVK/@@download/ENCFF267LVK.bigWig released s3://encode-public/2016/08/04/7b5bcd70-58af-45bb-b509-654bc221ea3b/ENCFF267LVK.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF923MTE fastq fastq reads ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 152028392 Michael Snyder, Stanford 5043ed7a7ba8c3180b01cbc1784a9dd4 https://www.encodeproject.org/files/ENCFF923MTE/@@download/ENCFF923MTE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d6aaa98f-f305-4a88-85bb-490395eee06c/ENCFF923MTE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF855HGX fastq fastq reads ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 99526087 Michael Snyder, Stanford 6b22eccea680085e6c396457c6b52f0a https://www.encodeproject.org/files/ENCFF855HGX/@@download/ENCFF855HGX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6c948689-b2d3-4467-871a-e315cb0c2011/ENCFF855HGX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF289IZH bam bam alignments ce10 ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF855HGX/, /files/ENCFF923MTE/, /files/ENCFF987UMF/ 335936541 Kevin White, UChicago 12d2ed551e11b9f440b5f7825b5938d9 https://www.encodeproject.org/files/ENCFF289IZH/@@download/ENCFF289IZH.bam released s3://encode-public/2016/10/18/a6aa1a74-a7f3-4c85-972f-bfe70a71432e/ENCFF289IZH.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF524LRG bam bam alignments ce11 ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF855HGX/, /files/ENCFF923MTE/, /files/ENCFF586MOL/ 336330443 Kevin White, UChicago 122e874bfe52ae193f5acb0da675bdd5 https://www.encodeproject.org/files/ENCFF524LRG/@@download/ENCFF524LRG.bam released s3://encode-public/2016/10/18/2f1fb968-3b2d-497e-a0f2-64a3bffd7f4d/ENCFF524LRG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF415WXJ bigWig bigWig read-depth normalized signal ce10 ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF289IZH/ 10010019 Kevin White, UChicago f63c803f02389f86d7a352d7321cafa5 https://www.encodeproject.org/files/ENCFF415WXJ/@@download/ENCFF415WXJ.bigWig released s3://encode-public/2016/10/20/3c119e5f-29a6-4568-9dc1-96f9a7c365af/ENCFF415WXJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF514YRL bigWig bigWig signal of unique reads ce10 ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF289IZH/ 10063595 Kevin White, UChicago ef3b2f064f6988dd5bb2da00ccfbb370 https://www.encodeproject.org/files/ENCFF514YRL/@@download/ENCFF514YRL.bigWig released s3://encode-public/2016/10/20/41f8314a-5b15-4481-a5c7-d207e43ce246/ENCFF514YRL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF773EQU bigWig bigWig signal of unique reads ce11 ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF524LRG/ 10057562 Kevin White, UChicago 9d145a87732c587cc6ebbb8901483216 https://www.encodeproject.org/files/ENCFF773EQU/@@download/ENCFF773EQU.bigWig released s3://encode-public/2016/10/20/64109254-26f8-4979-86da-d21938eb072a/ENCFF773EQU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF447GEP bigWig bigWig read-depth normalized signal ce11 ENCSR517BBL Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF524LRG/ 10006271 Kevin White, UChicago 2c31697c04554e7ed864083f43458100 https://www.encodeproject.org/files/ENCFF447GEP/@@download/ENCFF447GEP.bigWig released s3://encode-public/2016/10/20/570959f0-31d8-40df-beb8-452ca91f2d87/ENCFF447GEP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF967FQM fastq fastq reads ENCSR564FZY Control ChIP-seq /fly-donors/ENCDO139YTR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41740/'], '@type': ['Target', 'Item'], 'name': 'su(Hw)-dmelanogaster', 'label': 'su(Hw)', '@id': '/targets/su(Hw)-dmelanogaster/', 'title': 'su(Hw) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b8a9af6-d130-45d9-bfc8-3ae4ccf5b6c5', 'status': 'released'} dm3 3R 14303909 14322575 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 893106128 Kevin White, UChicago c69530da742266a621574b099f2c0962 https://www.encodeproject.org/files/ENCFF967FQM/@@download/ENCFF967FQM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/ace50fad-0a7a-4845-86d9-fcbca9621f22/ENCFF967FQM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF224DXG bam bam alignments dm3 ENCSR564FZY Control ChIP-seq /fly-donors/ENCDO139YTR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41740/'], '@type': ['Target', 'Item'], 'name': 'su(Hw)-dmelanogaster', 'label': 'su(Hw)', '@id': '/targets/su(Hw)-dmelanogaster/', 'title': 'su(Hw) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b8a9af6-d130-45d9-bfc8-3ae4ccf5b6c5', 'status': 'released'} dm3 3R 14303909 14322575 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF967FQM/, /files/ENCFF059UHX/ 1214815431 Kevin White, UChicago 71ae43946532c66fd914aba92ef3f994 https://www.encodeproject.org/files/ENCFF224DXG/@@download/ENCFF224DXG.bam released s3://encode-public/2016/12/23/d63d9796-b967-49cc-8e36-9bd69377e3cf/ENCFF224DXG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF180OVJ bam bam alignments dm6 ENCSR564FZY Control ChIP-seq /fly-donors/ENCDO139YTR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41740/'], '@type': ['Target', 'Item'], 'name': 'su(Hw)-dmelanogaster', 'label': 'su(Hw)', '@id': '/targets/su(Hw)-dmelanogaster/', 'title': 'su(Hw) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b8a9af6-d130-45d9-bfc8-3ae4ccf5b6c5', 'status': 'released'} dm3 3R 14303909 14322575 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF967FQM/, /files/ENCFF479RCH/ 1205681080 Kevin White, UChicago 09d2cc4b217a8e4b043c40e015c6281e https://www.encodeproject.org/files/ENCFF180OVJ/@@download/ENCFF180OVJ.bam released s3://encode-public/2016/12/23/0b5a089a-bb27-4204-9e03-857fa0586714/ENCFF180OVJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF417EBY bigWig bigWig read-depth normalized signal dm3 ENCSR564FZY Control ChIP-seq /fly-donors/ENCDO139YTR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41740/'], '@type': ['Target', 'Item'], 'name': 'su(Hw)-dmelanogaster', 'label': 'su(Hw)', '@id': '/targets/su(Hw)-dmelanogaster/', 'title': 'su(Hw) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b8a9af6-d130-45d9-bfc8-3ae4ccf5b6c5', 'status': 'released'} dm3 3R 14303909 14322575 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF224DXG/ 15545690 Kevin White, UChicago f2f9fa3235260d3c25860b43a7bcfa47 https://www.encodeproject.org/files/ENCFF417EBY/@@download/ENCFF417EBY.bigWig released s3://encode-public/2017/01/04/0cd49217-befa-4183-bea9-064d5a8ce82c/ENCFF417EBY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF967BMI bigWig bigWig signal of unique reads dm3 ENCSR564FZY Control ChIP-seq /fly-donors/ENCDO139YTR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41740/'], '@type': ['Target', 'Item'], 'name': 'su(Hw)-dmelanogaster', 'label': 'su(Hw)', '@id': '/targets/su(Hw)-dmelanogaster/', 'title': 'su(Hw) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b8a9af6-d130-45d9-bfc8-3ae4ccf5b6c5', 'status': 'released'} dm3 3R 14303909 14322575 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF224DXG/ 15526593 Kevin White, UChicago 476fe8edab390367d9f6bda2b68f9a04 https://www.encodeproject.org/files/ENCFF967BMI/@@download/ENCFF967BMI.bigWig released s3://encode-public/2017/01/04/90a59ee4-2055-4d4d-bfa6-097f4350d681/ENCFF967BMI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF046QZR bigWig bigWig read-depth normalized signal dm6 ENCSR564FZY Control ChIP-seq /fly-donors/ENCDO139YTR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41740/'], '@type': ['Target', 'Item'], 'name': 'su(Hw)-dmelanogaster', 'label': 'su(Hw)', '@id': '/targets/su(Hw)-dmelanogaster/', 'title': 'su(Hw) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b8a9af6-d130-45d9-bfc8-3ae4ccf5b6c5', 'status': 'released'} dm3 3R 14303909 14322575 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF180OVJ/ 17654719 Kevin White, UChicago 7283f4078628014fff73cb45e8732f0d https://www.encodeproject.org/files/ENCFF046QZR/@@download/ENCFF046QZR.bigWig released s3://encode-public/2017/01/04/ac7bbe00-5e30-4638-9a86-6c5887309146/ENCFF046QZR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF583VLI bigWig bigWig signal of unique reads dm6 ENCSR564FZY Control ChIP-seq /fly-donors/ENCDO139YTR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41740/'], '@type': ['Target', 'Item'], 'name': 'su(Hw)-dmelanogaster', 'label': 'su(Hw)', '@id': '/targets/su(Hw)-dmelanogaster/', 'title': 'su(Hw) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b8a9af6-d130-45d9-bfc8-3ae4ccf5b6c5', 'status': 'released'} dm3 3R 14303909 14322575 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF180OVJ/ 17621867 Kevin White, UChicago c943a58752fc211b916d69301c184799 https://www.encodeproject.org/files/ENCFF583VLI/@@download/ENCFF583VLI.bigWig released s3://encode-public/2017/01/04/bc9b7f76-94f0-488c-8fcd-62237c7e6237/ENCFF583VLI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF474AGU fastq fastq reads ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 46798251 Michael Snyder, Stanford 6f6390d353886c404e7772cbcc95e4c4 https://www.encodeproject.org/files/ENCFF474AGU/@@download/ENCFF474AGU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/68f64678-320f-42e3-be77-1b37df3c1a22/ENCFF474AGU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF101ZZT fastq fastq reads ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 69172027 Michael Snyder, Stanford 4a9f1fc42c07b2c82ce64e4a3539875a https://www.encodeproject.org/files/ENCFF101ZZT/@@download/ENCFF101ZZT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/362a3706-a311-4a9a-8440-bbca4e0e5a6a/ENCFF101ZZT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF107ZQG fastq fastq reads ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 41519286 Michael Snyder, Stanford 7dbb288c396008b6072dbdf899c66ffd https://www.encodeproject.org/files/ENCFF107ZQG/@@download/ENCFF107ZQG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/eebcb49c-c962-4556-b395-d8376e62ede7/ENCFF107ZQG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF055RIZ bam bam alignments ce10 ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF474AGU/, /files/ENCFF101ZZT/, /files/ENCFF107ZQG/, /files/ENCFF987UMF/ 197788704 Kevin White, UChicago b1fe836f22acf3da89dd8dc7b2c486c2 https://www.encodeproject.org/files/ENCFF055RIZ/@@download/ENCFF055RIZ.bam released s3://encode-public/2017/04/27/2bd32a1b-b420-4ec2-8ae6-67405a9aba43/ENCFF055RIZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF134JHC bam bam alignments ce11 ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF474AGU/, /files/ENCFF101ZZT/, /files/ENCFF107ZQG/, /files/ENCFF586MOL/ 197976100 Kevin White, UChicago 8caa4346caff03da6e98c882f273e058 https://www.encodeproject.org/files/ENCFF134JHC/@@download/ENCFF134JHC.bam released s3://encode-public/2017/04/27/a8aaa9e3-d406-474d-bd44-e0709210cb9b/ENCFF134JHC.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF081ZEN bigWig bigWig read-depth normalized signal ce10 ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF055RIZ/ 9971006 Kevin White, UChicago 62fda66fb964ff2a105a7ed233cc5f7b https://www.encodeproject.org/files/ENCFF081ZEN/@@download/ENCFF081ZEN.bigWig released s3://encode-public/2017/04/29/7fe64ce3-0f53-4ece-98ce-0c327b734d8e/ENCFF081ZEN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF978UNL bigWig bigWig signal of unique reads ce10 ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF055RIZ/ 9965680 Kevin White, UChicago 8e78a4e5e6d2c25e6c4c111f6caa7f59 https://www.encodeproject.org/files/ENCFF978UNL/@@download/ENCFF978UNL.bigWig released s3://encode-public/2017/04/29/1dbbf7d1-059d-4efd-8703-73430eaba79b/ENCFF978UNL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF154RUI bigWig bigWig read-depth normalized signal ce11 ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF134JHC/ 9967897 Kevin White, UChicago 0504fa73739fe253b1611d5532c5a107 https://www.encodeproject.org/files/ENCFF154RUI/@@download/ENCFF154RUI.bigWig released s3://encode-public/2017/04/29/04f126d0-6879-4528-9efb-0f9cf2177fe5/ENCFF154RUI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF910GTX bigWig bigWig signal of unique reads ce11 ENCSR966NHU Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF134JHC/ 9959550 Kevin White, UChicago f54462c157f95a43b40846bdf82b2ffc https://www.encodeproject.org/files/ENCFF910GTX/@@download/ENCFF910GTX.bigWig released s3://encode-public/2017/04/29/eb028d85-17b0-40c0-a1c2-520d622b597d/ENCFF910GTX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF483WKP bam bam unfiltered alignments hg19 ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF047NSE/, /files/ENCFF807MUK/, /files/ENCFF743SMH/ 6402923478 ENCODE Processing Pipeline 945ef7b1193de376bcedc9459f748b31 https://www.encodeproject.org/files/ENCFF483WKP/@@download/ENCFF483WKP.bam released s3://encode-public/2018/02/21/492c61c7-b3fa-426c-947d-ea55855370c1/ENCFF483WKP.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF047NSE fastq fastq reads ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF743SMH/ 2930765462 Michael Snyder, Stanford 5b05991e09ff02add06daf6469067566 SRA:SRR5111802 https://www.encodeproject.org/files/ENCFF047NSE/@@download/ENCFF047NSE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/db6b4cd5-2b74-40de-9a6d-09073fe586df/ENCFF047NSE.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF743SMH fastq fastq reads ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF047NSE/ 3024017460 Michael Snyder, Stanford c8d94402f7812ba8a82cfbb21c28c3a5 SRA:SRR5111802 https://www.encodeproject.org/files/ENCFF743SMH/@@download/ENCFF743SMH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/5314d0c3-e12b-43d4-9579-8329fbc439ea/ENCFF743SMH.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF252CHQ bam bam alignments hg19 ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF047NSE/, /files/ENCFF807MUK/, /files/ENCFF743SMH/ 5359536186 ENCODE Processing Pipeline 5e49965a42551be63459c240db742547 https://www.encodeproject.org/files/ENCFF252CHQ/@@download/ENCFF252CHQ.bam released s3://encode-public/2016/01/15/ce7c29f1-cf89-4e3e-9efa-e6dfbcf1fd0f/ENCFF252CHQ.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF880EVO bam bam unfiltered alignments GRCh38 ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF047NSE/, /files/ENCFF643CGH/, /files/ENCFF743SMH/ 6414425533 ENCODE Processing Pipeline 55bb0022681d5a683bfeb8b4fb96c7c8 https://www.encodeproject.org/files/ENCFF880EVO/@@download/ENCFF880EVO.bam released s3://encode-public/2016/05/06/9b890240-bba1-4cbe-96b2-cbea00380fab/ENCFF880EVO.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF399WOX bam bam alignments GRCh38 ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF047NSE/, /files/ENCFF643CGH/, /files/ENCFF743SMH/ 5364689540 ENCODE Processing Pipeline e8a1c2d149ae3eae59105d5d2949bdef https://www.encodeproject.org/files/ENCFF399WOX/@@download/ENCFF399WOX.bam released s3://encode-public/2016/05/06/bd1bcc3c-34c0-4ff8-a49e-61d157b53238/ENCFF399WOX.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF239AHT bam bam unfiltered alignments GRCh38 ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 /files/ENCFF047NSE/, /files/ENCFF110MCL/, /files/ENCFF743SMH/ 6342121417 ENCODE Processing Pipeline 05b6168209c2decadf23a317dfcdb6de https://www.encodeproject.org/files/ENCFF239AHT/@@download/ENCFF239AHT.bam released s3://encode-public/2020/06/13/ff902a24-4e76-43e3-b1f6-b52616eca1f7/ENCFF239AHT.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF672HOM bam bam alignments GRCh38 ENCSR578DNH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-2068'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55869/'], '@type': ['Target', 'Item'], 'name': 'HDAC8-human', 'label': 'HDAC8', '@id': '/targets/HDAC8-human/', 'title': 'HDAC8 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '78232b91-40a1-42a8-80b1-dd00555c7874', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 /files/ENCFF047NSE/, /files/ENCFF110MCL/, /files/ENCFF743SMH/ 5077086602 ENCODE Processing Pipeline 870f4566843f1fed1a6a6f2f77e280f7 https://www.encodeproject.org/files/ENCFF672HOM/@@download/ENCFF672HOM.bam released s3://encode-public/2020/06/13/be75ef87-332b-418a-8e1e-f556faee1316/ENCFF672HOM.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF683KPL fastq fastq reads ENCSR730RCJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF394JTV/ 2414987017 Michael Snyder, Stanford 801cc34bdeeb9cd74dbd40870fa4c3a3 SRA:SRR14103293 https://www.encodeproject.org/files/ENCFF683KPL/@@download/ENCFF683KPL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/19/def86c1b-de0f-4033-8927-337ae406fc19/ENCFF683KPL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF394JTV fastq fastq reads ENCSR730RCJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF683KPL/ 2627318379 Michael Snyder, Stanford ede997f4bd0c7ee623f4370c32269c15 SRA:SRR14103293 https://www.encodeproject.org/files/ENCFF394JTV/@@download/ENCFF394JTV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/19/974cb50f-c371-4318-a841-0fd26da42615/ENCFF394JTV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF916BUW bam bam unfiltered alignments GRCh38 ENCSR730RCJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF683KPL/, /files/ENCFF394JTV/ 4710477209 ENCODE Processing Pipeline 39d9585967c9e26e6ea456d42d63998a https://www.encodeproject.org/files/ENCFF916BUW/@@download/ENCFF916BUW.bam released s3://encode-public/2020/04/21/2e14cc54-d9ed-4366-a8e9-1f281e2868de/ENCFF916BUW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF794BBT bam bam alignments GRCh38 ENCSR730RCJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF683KPL/, /files/ENCFF394JTV/ 2634891508 ENCODE Processing Pipeline c6fa41934e7968cc6df81d0c774bd1ff https://www.encodeproject.org/files/ENCFF794BBT/@@download/ENCFF794BBT.bam released s3://encode-public/2020/04/21/c505c76e-6c9c-45b8-abff-0ff9d15bf584/ENCFF794BBT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF643BIM fastq fastq reads ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF137EJL/ 2551693022 Michael Snyder, Stanford b65dfc36cd70c3af1b47c0c50ce43c2b SRA:SRR8660330 https://www.encodeproject.org/files/ENCFF643BIM/@@download/ENCFF643BIM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/ca72c4fe-e72e-4614-b15c-5daf8d323d5f/ENCFF643BIM.fastq.gz mild to moderate bottlenecking ENCFF137EJL fastq fastq reads ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF643BIM/ 2511809399 Michael Snyder, Stanford 4ab2c3fe194fd94116b481b2b4f1785c SRA:SRR8660330 https://www.encodeproject.org/files/ENCFF137EJL/@@download/ENCFF137EJL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/f54d6add-b895-476d-a944-29fac7e936ad/ENCFF137EJL.fastq.gz mild to moderate bottlenecking ENCFF452ELS fastq fastq reads ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF893RME/ 1920868989 Michael Snyder, Stanford b86e32f44c51c90decd4c97baf54c714 SRA:SRR8660328 https://www.encodeproject.org/files/ENCFF452ELS/@@download/ENCFF452ELS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/2c8eea8a-632f-4fcb-9359-839d0b88cd04/ENCFF452ELS.fastq.gz mild to moderate bottlenecking ENCFF893RME fastq fastq reads ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF452ELS/ 1917073519 Michael Snyder, Stanford c90d901bc93ae062655311d1b853e085 SRA:SRR8660328 https://www.encodeproject.org/files/ENCFF893RME/@@download/ENCFF893RME.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/a4520a1d-d996-4bfe-9bb6-33421ff42236/ENCFF893RME.fastq.gz mild to moderate bottlenecking ENCFF635SFQ bam bam unfiltered alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF893RME/, /files/ENCFF452ELS/ 4561633911 ENCODE Processing Pipeline b2dbd9bab6df4a1f457b59f7160257d5 https://www.encodeproject.org/files/ENCFF635SFQ/@@download/ENCFF635SFQ.bam archived s3://encode-public/2016/12/15/7b7ab844-20e1-46a9-86d5-9bb91e0c797d/ENCFF635SFQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF347RMB bam bam unfiltered alignments hg19 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF893RME/, /files/ENCFF452ELS/ 4542069895 ENCODE Processing Pipeline 9ff47301dabd2d6f9fa74fb1638f71e6 https://www.encodeproject.org/files/ENCFF347RMB/@@download/ENCFF347RMB.bam archived s3://encode-public/2016/12/15/affaac85-168c-4d05-928b-66c7aecde2ae/ENCFF347RMB.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF914NZP bam bam alignments hg19 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF893RME/, /files/ENCFF452ELS/ 2356825882 ENCODE Processing Pipeline d7789712d8c0769921933c6dbb8c77d8 https://www.encodeproject.org/files/ENCFF914NZP/@@download/ENCFF914NZP.bam archived s3://encode-public/2016/12/15/b150abfe-2741-4641-866c-3f676ef154b1/ENCFF914NZP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF115ZZK bam bam alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF893RME/, /files/ENCFF452ELS/ 2361941782 ENCODE Processing Pipeline bdf9f2c0475b5994175a72d5e4d09190 https://www.encodeproject.org/files/ENCFF115ZZK/@@download/ENCFF115ZZK.bam archived s3://encode-public/2016/12/15/7731be20-4d8c-4b4a-80fb-6d8c6b6ae116/ENCFF115ZZK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF455XPD bam bam unfiltered alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF643BIM/, /files/ENCFF137EJL/ 5717478960 ENCODE Processing Pipeline fc65423f30ff2e718b0076c480072c41 https://www.encodeproject.org/files/ENCFF455XPD/@@download/ENCFF455XPD.bam released s3://encode-public/2016/12/15/8d5ffff8-1657-4bb7-b7cb-44d0d82667a5/ENCFF455XPD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF169DGZ bam bam alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF643BIM/, /files/ENCFF137EJL/ 4945873795 ENCODE Processing Pipeline efcd431d79d931e67ecc72f3a712da91 https://www.encodeproject.org/files/ENCFF169DGZ/@@download/ENCFF169DGZ.bam released s3://encode-public/2016/12/15/0c17caf6-ebaf-4262-bc70-4ea1cc450403/ENCFF169DGZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF635ZSB bam bam unfiltered alignments hg19 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF643BIM/, /files/ENCFF137EJL/ 5706218079 ENCODE Processing Pipeline 8638c5107f0d4cfafd3c8e60a38335a3 https://www.encodeproject.org/files/ENCFF635ZSB/@@download/ENCFF635ZSB.bam released s3://encode-public/2016/12/15/3a042307-b402-49ff-93e0-95e4269c34da/ENCFF635ZSB.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF240KUX bam bam alignments hg19 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF643BIM/, /files/ENCFF137EJL/ 4936461243 ENCODE Processing Pipeline 7ee20b7c06e5624bc9da1fd3f666f722 https://www.encodeproject.org/files/ENCFF240KUX/@@download/ENCFF240KUX.bam released s3://encode-public/2016/12/15/77c3d6ec-81a3-4e09-a0f5-72f8108efc03/ENCFF240KUX.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF426IGI fastq fastq reads ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF578MJS/ 6800491941 Michael Snyder, Stanford 7a393a7276845defe09683369809cce1 SRA:SRR8660329 https://www.encodeproject.org/files/ENCFF426IGI/@@download/ENCFF426IGI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/13/9629a2e6-2b5e-44e4-a11e-e324c8998492/ENCFF426IGI.fastq.gz mild to moderate bottlenecking ENCFF578MJS fastq fastq reads ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF426IGI/ 7019562812 Michael Snyder, Stanford 388f5fdc5bbb2726ac38e50559a0dc42 SRA:SRR8660329 https://www.encodeproject.org/files/ENCFF578MJS/@@download/ENCFF578MJS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/13/098421c0-d895-4e7a-afad-5d73fea3a0c7/ENCFF578MJS.fastq.gz mild to moderate bottlenecking ENCFF690RUG bam bam alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF578MJS/, /files/ENCFF452ELS/, /files/ENCFF426IGI/, /files/ENCFF893RME/ 8349201096 ENCODE Processing Pipeline 8608f13b42c6ece2bb6017a284155801 https://www.encodeproject.org/files/ENCFF690RUG/@@download/ENCFF690RUG.bam released s3://encode-public/2017/07/14/162f3cb0-4816-4d5d-bb82-3b1ab346a7ff/ENCFF690RUG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF988SZY bam bam unfiltered alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF578MJS/, /files/ENCFF452ELS/, /files/ENCFF426IGI/, /files/ENCFF893RME/ 17627847144 ENCODE Processing Pipeline 3102170a7ada6c095d4f86d3545f232c https://www.encodeproject.org/files/ENCFF988SZY/@@download/ENCFF988SZY.bam released s3://encode-public/2017/07/14/4e7f91f8-934b-444e-940f-b0ebc4ee7880/ENCFF988SZY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF894KGX bam bam unfiltered alignments hg19 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF578MJS/, /files/ENCFF452ELS/, /files/ENCFF426IGI/, /files/ENCFF893RME/ 17567166734 ENCODE Processing Pipeline 20be512127aebde0a07a551bfa30b88c https://www.encodeproject.org/files/ENCFF894KGX/@@download/ENCFF894KGX.bam released s3://encode-public/2017/07/19/073b2593-dfb4-47ad-9afe-cedda8ca1ee4/ENCFF894KGX.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF564TQN bam bam alignments hg19 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF578MJS/, /files/ENCFF452ELS/, /files/ENCFF426IGI/, /files/ENCFF893RME/ 8329947456 ENCODE Processing Pipeline f506b6480f41d0e898f2ed963af7fe59 https://www.encodeproject.org/files/ENCFF564TQN/@@download/ENCFF564TQN.bam released s3://encode-public/2017/07/19/0c1abb10-f68e-419f-a893-02802c586539/ENCFF564TQN.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF458ILT bam bam alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF137EJL/, /files/ENCFF643BIM/ 4900457506 ENCODE Processing Pipeline 26202db59630a14414737f3f607197ea https://www.encodeproject.org/files/ENCFF458ILT/@@download/ENCFF458ILT.bam released s3://encode-public/2020/06/02/9580798e-14c3-4673-940e-723586ee8608/ENCFF458ILT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF515IWI bam bam alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF452ELS/, /files/ENCFF426IGI/, /files/ENCFF893RME/, /files/ENCFF578MJS/ 8687233092 ENCODE Processing Pipeline e7a1a936c00f44bfee0353efe1c6a387 https://www.encodeproject.org/files/ENCFF515IWI/@@download/ENCFF515IWI.bam released s3://encode-public/2020/06/02/fc569909-75dd-47f5-a3d0-ad596b50bb42/ENCFF515IWI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF007BSI bam bam unfiltered alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF137EJL/, /files/ENCFF643BIM/ 5691147841 ENCODE Processing Pipeline a980402e01a96ad7f32bf1b6a817f50c https://www.encodeproject.org/files/ENCFF007BSI/@@download/ENCFF007BSI.bam released s3://encode-public/2020/06/02/d5759a71-c43a-40a8-ae9c-be86db2eac02/ENCFF007BSI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF396QKD bam bam unfiltered alignments GRCh38 ENCSR394DWD Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0007610 RWPE2 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF452ELS/, /files/ENCFF426IGI/, /files/ENCFF893RME/, /files/ENCFF578MJS/ 17728961686 ENCODE Processing Pipeline 5a83dab7deb9ee762f05fe3378d34fc3 https://www.encodeproject.org/files/ENCFF396QKD/@@download/ENCFF396QKD.bam released s3://encode-public/2020/06/02/8003fed7-e4d9-472c-89b0-d1f110f5ddd5/ENCFF396QKD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF915MPV fastq fastq reads ENCSR653VKU Control ChIP-seq /fly-donors/ENCDO490GJI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41134/'], '@type': ['Target', 'Item'], 'name': 'CG16779-dmelanogaster', 'label': 'CG16779', '@id': '/targets/CG16779-dmelanogaster/', 'title': 'CG16779 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor', 'transcription factor'], 'uuid': 'ca99a40a-28e9-4f41-a88b-976c1db963d5', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 669942997 Kevin White, UChicago 6140a5908490a72be1c584005aecafeb https://www.encodeproject.org/files/ENCFF915MPV/@@download/ENCFF915MPV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/85aaff88-3c91-430c-a813-687c0204b22a/ENCFF915MPV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF915WNF bam bam alignments dm3 ENCSR653VKU Control ChIP-seq /fly-donors/ENCDO490GJI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41134/'], '@type': ['Target', 'Item'], 'name': 'CG16779-dmelanogaster', 'label': 'CG16779', '@id': '/targets/CG16779-dmelanogaster/', 'title': 'CG16779 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor', 'transcription factor'], 'uuid': 'ca99a40a-28e9-4f41-a88b-976c1db963d5', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF915MPV/, /files/ENCFF059UHX/ 900191894 Kevin White, UChicago 39706c551dd79bc9c33db680543f3b7d https://www.encodeproject.org/files/ENCFF915WNF/@@download/ENCFF915WNF.bam released s3://encode-public/2016/12/21/4bb7d86b-7671-4dec-b7b8-504d46fc1b9c/ENCFF915WNF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF705DHP bam bam alignments dm6 ENCSR653VKU Control ChIP-seq /fly-donors/ENCDO490GJI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41134/'], '@type': ['Target', 'Item'], 'name': 'CG16779-dmelanogaster', 'label': 'CG16779', '@id': '/targets/CG16779-dmelanogaster/', 'title': 'CG16779 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor', 'transcription factor'], 'uuid': 'ca99a40a-28e9-4f41-a88b-976c1db963d5', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF915MPV/, /files/ENCFF479RCH/ 895174021 Kevin White, UChicago e95849ee4b55e82040af4afdcd32ebb9 https://www.encodeproject.org/files/ENCFF705DHP/@@download/ENCFF705DHP.bam released s3://encode-public/2016/12/22/b357ce74-4f20-45fc-b2d0-fdf2b52ff0e5/ENCFF705DHP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF008NUD bigWig bigWig read-depth normalized signal dm3 ENCSR653VKU Control ChIP-seq /fly-donors/ENCDO490GJI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41134/'], '@type': ['Target', 'Item'], 'name': 'CG16779-dmelanogaster', 'label': 'CG16779', '@id': '/targets/CG16779-dmelanogaster/', 'title': 'CG16779 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor', 'transcription factor'], 'uuid': 'ca99a40a-28e9-4f41-a88b-976c1db963d5', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF915WNF/ 15304914 Kevin White, UChicago f1e3a5c7a1d4e012f6d8f97d70bf297c https://www.encodeproject.org/files/ENCFF008NUD/@@download/ENCFF008NUD.bigWig released s3://encode-public/2017/01/06/7fa48977-fd84-4cb7-8837-2dfebf61306d/ENCFF008NUD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF009BJQ bigWig bigWig signal of unique reads dm3 ENCSR653VKU Control ChIP-seq /fly-donors/ENCDO490GJI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41134/'], '@type': ['Target', 'Item'], 'name': 'CG16779-dmelanogaster', 'label': 'CG16779', '@id': '/targets/CG16779-dmelanogaster/', 'title': 'CG16779 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor', 'transcription factor'], 'uuid': 'ca99a40a-28e9-4f41-a88b-976c1db963d5', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF915WNF/ 15311557 Kevin White, UChicago 0dd322073e8b7c7e50edc0341758c689 https://www.encodeproject.org/files/ENCFF009BJQ/@@download/ENCFF009BJQ.bigWig released s3://encode-public/2017/01/06/8fd48365-6675-4502-a4b2-ce5734f7e602/ENCFF009BJQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF646KRU bigWig bigWig read-depth normalized signal dm6 ENCSR653VKU Control ChIP-seq /fly-donors/ENCDO490GJI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41134/'], '@type': ['Target', 'Item'], 'name': 'CG16779-dmelanogaster', 'label': 'CG16779', '@id': '/targets/CG16779-dmelanogaster/', 'title': 'CG16779 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor', 'transcription factor'], 'uuid': 'ca99a40a-28e9-4f41-a88b-976c1db963d5', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF705DHP/ 17407434 Kevin White, UChicago e85144a5db29639f02b3c0be2e24cc93 https://www.encodeproject.org/files/ENCFF646KRU/@@download/ENCFF646KRU.bigWig released s3://encode-public/2017/01/06/d4e3661b-3dd9-482b-9a2c-bf1cd3b75324/ENCFF646KRU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF479ZIR bigWig bigWig signal of unique reads dm6 ENCSR653VKU Control ChIP-seq /fly-donors/ENCDO490GJI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41134/'], '@type': ['Target', 'Item'], 'name': 'CG16779-dmelanogaster', 'label': 'CG16779', '@id': '/targets/CG16779-dmelanogaster/', 'title': 'CG16779 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor', 'transcription factor'], 'uuid': 'ca99a40a-28e9-4f41-a88b-976c1db963d5', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF705DHP/ 17408906 Kevin White, UChicago dbcc7a9480f56f98808ccb1e74fea888 https://www.encodeproject.org/files/ENCFF479ZIR/@@download/ENCFF479ZIR.bigWig released s3://encode-public/2017/01/06/758a5118-abb6-4c7f-8aa6-6534d3f453e9/ENCFF479ZIR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF236YCR fastq fastq reads ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF113QAJ/ 3045039289 Michael Snyder, Stanford 05768dd112b72ca01301d3ef82cdaee9 SRA:SRR5111620 https://www.encodeproject.org/files/ENCFF236YCR/@@download/ENCFF236YCR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/72cc45ae-3498-4058-88c1-c0f2c33dae28/ENCFF236YCR.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF113QAJ fastq fastq reads ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF236YCR/ 3133019139 Michael Snyder, Stanford 1cb930c0efe279a45a0067125c399fc7 SRA:SRR5111620 https://www.encodeproject.org/files/ENCFF113QAJ/@@download/ENCFF113QAJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/7c0ea3d9-772c-4d45-8c4b-eeae74337380/ENCFF113QAJ.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF276OII bam bam alignments GRCh38 ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 101 /files/ENCFF236YCR/, /files/ENCFF113QAJ/, /files/ENCFF643CGH/ 5499550038 ENCODE Processing Pipeline 6f64ef7bc0a37ce20ac82ad2eea5dd34 https://www.encodeproject.org/files/ENCFF276OII/@@download/ENCFF276OII.bam released s3://encode-public/2016/08/30/b034dcdf-af4f-47cd-9474-4786f1598187/ENCFF276OII.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF578IIL bam bam unfiltered alignments GRCh38 ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 101 /files/ENCFF236YCR/, /files/ENCFF113QAJ/, /files/ENCFF643CGH/ 6605459811 ENCODE Processing Pipeline c6825dbbca6eb29a4f35792a66e9827b https://www.encodeproject.org/files/ENCFF578IIL/@@download/ENCFF578IIL.bam released s3://encode-public/2016/08/30/71719144-d898-4d2e-b432-a63015e9d64f/ENCFF578IIL.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF716BYK bam bam unfiltered alignments hg19 ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 101 /files/ENCFF236YCR/, /files/ENCFF807MUK/, /files/ENCFF113QAJ/ 6594492235 ENCODE Processing Pipeline 02f8ce8c4314201723fc08d53f0f57f0 https://www.encodeproject.org/files/ENCFF716BYK/@@download/ENCFF716BYK.bam released s3://encode-public/2016/08/30/73abaee0-f830-4916-bf78-894fbd6ca200/ENCFF716BYK.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF194ZKK bam bam alignments hg19 ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 101 /files/ENCFF236YCR/, /files/ENCFF807MUK/, /files/ENCFF113QAJ/ 5495429266 ENCODE Processing Pipeline e965c03708d29ec1ceb32994db71499b https://www.encodeproject.org/files/ENCFF194ZKK/@@download/ENCFF194ZKK.bam released s3://encode-public/2016/08/30/3c899572-f51a-4da7-a5e9-711acbf1b340/ENCFF194ZKK.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF741WXA bam bam unfiltered alignments GRCh38 ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF236YCR/, /files/ENCFF113QAJ/ 6531123107 ENCODE Processing Pipeline e5ab5c6389202d79feeeee2592e92cc3 https://www.encodeproject.org/files/ENCFF741WXA/@@download/ENCFF741WXA.bam released s3://encode-public/2020/06/02/514bd304-0834-49ba-b1d0-f15c456abc01/ENCFF741WXA.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF479CME bam bam alignments GRCh38 ENCSR468BNS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2016-09-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF236YCR/, /files/ENCFF113QAJ/ 5195965434 ENCODE Processing Pipeline 9bcfc8b4a9808769795846f7a7ce484c https://www.encodeproject.org/files/ENCFF479CME/@@download/ENCFF479CME.bam released s3://encode-public/2020/06/02/803ef825-28e8-41db-8d75-bd4cd5bcf1f4/ENCFF479CME.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF883ZYF fastq fastq reads ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1067350443 Zhiping Weng, UMass 8e81a3614c9ada2480e80ea15210671b SRA:SRR449618 https://www.encodeproject.org/files/ENCFF883ZYF/@@download/ENCFF883ZYF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/fdd71ffd-8190-4aae-9ed3-0147b4823241/ENCFF883ZYF.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF901NKI bam bam unfiltered alignments hg19 ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF883ZYF/, /files/ENCFF807MUK/ 1285217415 ENCODE Processing Pipeline ded09b3bdf5b80247bef1fd3f7bed739 https://www.encodeproject.org/files/ENCFF901NKI/@@download/ENCFF901NKI.bam released s3://encode-public/2016/12/19/a01fc403-c64a-415f-959f-2a3fa9413c39/ENCFF901NKI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF004BVL bam bam unfiltered alignments GRCh38 ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF883ZYF/, /files/ENCFF643CGH/ 1289539817 ENCODE Processing Pipeline 332475b9f46ce70202d3ee619985fe52 https://www.encodeproject.org/files/ENCFF004BVL/@@download/ENCFF004BVL.bam released s3://encode-public/2016/12/19/0c2fc751-3755-4b02-9838-bc1874c3a695/ENCFF004BVL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF976YJZ bam bam alignments hg19 ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF883ZYF/, /files/ENCFF807MUK/ 662683175 ENCODE Processing Pipeline d0fe224bb53b06750570070ae6560207 https://www.encodeproject.org/files/ENCFF976YJZ/@@download/ENCFF976YJZ.bam released s3://encode-public/2016/12/19/61bdb4a4-a23e-4629-b597-572f74b3dbed/ENCFF976YJZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF861FUK bam bam alignments GRCh38 ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF883ZYF/, /files/ENCFF643CGH/ 662350250 ENCODE Processing Pipeline 7e5991281a4451091e18c80ff35bfc1b https://www.encodeproject.org/files/ENCFF861FUK/@@download/ENCFF861FUK.bam released s3://encode-public/2016/12/19/bcdd126d-0f8b-4c6a-90f4-afcadcd1f89d/ENCFF861FUK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF042VEU tagAlign tagAlign alignments hg19 ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF883ZYF/ 114245298 Anshul Kundaje, Stanford 8e0f9f0dc3f8d1ecced09c93aa1ed204 https://www.encodeproject.org/files/ENCFF042VEU/@@download/ENCFF042VEU.tagAlign.gz archived s3://encode-public/2016/02/11/882de8fb-07a9-481c-8697-34ba2edea8ff/ENCFF042VEU.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF050XCZ bam bam unfiltered alignments GRCh38 ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF883ZYF/, /files/ENCFF110MCL/ 1245898370 ENCODE Processing Pipeline 51823098ca495bb9ab8dc96dd7f8158c https://www.encodeproject.org/files/ENCFF050XCZ/@@download/ENCFF050XCZ.bam released s3://encode-public/2020/10/08/c2a4ac25-c2b9-4ac8-b4de-dbd4bcdc0676/ENCFF050XCZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF479KBS bam bam alignments GRCh38 ENCSR201KGX Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF883ZYF/, /files/ENCFF110MCL/ 743128051 ENCODE Processing Pipeline 88d4435719bd15eb3cac91ec856e3cf4 https://www.encodeproject.org/files/ENCFF479KBS/@@download/ENCFF479KBS.bam released s3://encode-public/2020/10/08/7172e918-2782-4101-a9d3-d108f1438d6d/ENCFF479KBS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF148XWC bam bam unfiltered alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF591UVY/, /files/ENCFF417XKK/ 7063090102 ENCODE Processing Pipeline 6167d5ceb1714c5dddd4243f95af6bb6 https://www.encodeproject.org/files/ENCFF148XWC/@@download/ENCFF148XWC.bam released s3://encode-public/2020/09/30/5f19afbf-97ed-43ec-9410-df55d7e66b1c/ENCFF148XWC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF703GYM bam bam alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF978IRR/, /files/ENCFF576RZA/ 4888491972 ENCODE Processing Pipeline a2b220b6d99c59eb8201864e46b5e776 https://www.encodeproject.org/files/ENCFF703GYM/@@download/ENCFF703GYM.bam released s3://encode-public/2020/09/30/c7dd31fd-3e77-4dc7-b7f0-5c1b55ee2fd3/ENCFF703GYM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF576RZA fastq fastq reads ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 1 /files/ENCFF978IRR/ 3303328950 Michael Snyder, Stanford acaabe12062d2d01dc88ec4a061d2b55 SRA:SRR14636976 https://www.encodeproject.org/files/ENCFF576RZA/@@download/ENCFF576RZA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/0dcda70d-afc6-4802-953e-9e9b2aaac6c8/ENCFF576RZA.fastq.gz ENCFF978IRR fastq fastq reads ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 2 /files/ENCFF576RZA/ 3504814416 Michael Snyder, Stanford e1e61d19cbbd89f6421624263b02451e SRA:SRR14636976 https://www.encodeproject.org/files/ENCFF978IRR/@@download/ENCFF978IRR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/ad4e74e8-30e6-4e1e-86e5-74bf1d511f23/ENCFF978IRR.fastq.gz ENCFF417XKK fastq fastq reads ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 1 /files/ENCFF591UVY/ 3532456992 Michael Snyder, Stanford 12b8cec1da3b185adfc42a24edc7d148 SRA:SRR14636975 https://www.encodeproject.org/files/ENCFF417XKK/@@download/ENCFF417XKK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/53f24488-8c71-4fc1-96a6-3113d1904176/ENCFF417XKK.fastq.gz ENCFF591UVY fastq fastq reads ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 2 /files/ENCFF417XKK/ 3783013717 Michael Snyder, Stanford 79a1f5534e8d949d7ca486959e8a75ce SRA:SRR14636975 https://www.encodeproject.org/files/ENCFF591UVY/@@download/ENCFF591UVY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/9fd3bac2-0825-4ea3-bf4f-43c202628c56/ENCFF591UVY.fastq.gz ENCFF941KVW bam bam unfiltered alignments hg19 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF576RZA/, /files/ENCFF978IRR/, /files/ENCFF807MUK/ 6407095151 ENCODE Processing Pipeline ab1068b5985c80360704c0f1cbc8d4f6 https://www.encodeproject.org/files/ENCFF941KVW/@@download/ENCFF941KVW.bam released s3://encode-public/2017/01/08/11e25c25-d373-4f81-af01-2eee3fbce063/ENCFF941KVW.bam ENCODE3 hg19 archived ENCFF840JCQ bam bam alignments hg19 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF576RZA/, /files/ENCFF978IRR/, /files/ENCFF807MUK/ 4887686721 ENCODE Processing Pipeline 3766dc50b57ba7ef038a1f62db990948 https://www.encodeproject.org/files/ENCFF840JCQ/@@download/ENCFF840JCQ.bam released s3://encode-public/2017/01/08/64456cf3-2721-435a-9a8f-02a1126b3527/ENCFF840JCQ.bam ENCODE3 hg19 archived ENCFF178GZR bam bam alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF576RZA/, /files/ENCFF978IRR/, /files/ENCFF643CGH/ 4896815305 ENCODE Processing Pipeline 0c95093bd34506cae1440aa12d67418d https://www.encodeproject.org/files/ENCFF178GZR/@@download/ENCFF178GZR.bam released s3://encode-public/2017/01/08/77f2a5fc-8fda-4696-904d-861d7a93a540/ENCFF178GZR.bam ENCODE3 GRCh38 archived ENCFF663IMU bam bam unfiltered alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF576RZA/, /files/ENCFF978IRR/, /files/ENCFF643CGH/ 6417833200 ENCODE Processing Pipeline 84df7780f6746c5157c7e17f0267ec54 https://www.encodeproject.org/files/ENCFF663IMU/@@download/ENCFF663IMU.bam released s3://encode-public/2017/01/08/9a93f7ec-2fd6-45b0-ba28-cf20b467723f/ENCFF663IMU.bam ENCODE3 GRCh38 archived ENCFF494ZIN bam bam unfiltered alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF591UVY/, /files/ENCFF643CGH/, /files/ENCFF417XKK/ 6971666323 ENCODE Processing Pipeline 1db6668cd9e518d0a058a127b3ea7cdb https://www.encodeproject.org/files/ENCFF494ZIN/@@download/ENCFF494ZIN.bam released s3://encode-public/2017/01/08/7be91888-6b19-4aba-bc8a-666303bfd33c/ENCFF494ZIN.bam ENCODE3 GRCh38 archived ENCFF865TRL bam bam alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF591UVY/, /files/ENCFF643CGH/, /files/ENCFF417XKK/ 5599074692 ENCODE Processing Pipeline 7c7fa6adec60b90c6db97d5acc486e06 https://www.encodeproject.org/files/ENCFF865TRL/@@download/ENCFF865TRL.bam released s3://encode-public/2017/01/08/bf653af8-5e22-49d2-b3ff-c21a15606d4f/ENCFF865TRL.bam ENCODE3 GRCh38 archived ENCFF379ZDL bam bam unfiltered alignments hg19 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF591UVY/, /files/ENCFF807MUK/, /files/ENCFF417XKK/ 6958333771 ENCODE Processing Pipeline ea78ee4e3a41ec187453c28f08317ec8 https://www.encodeproject.org/files/ENCFF379ZDL/@@download/ENCFF379ZDL.bam released s3://encode-public/2017/01/10/1360a58c-092f-4bb7-850f-2ecfbfabe2d2/ENCFF379ZDL.bam ENCODE3 hg19 archived ENCFF014QVX bam bam alignments hg19 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF591UVY/, /files/ENCFF807MUK/, /files/ENCFF417XKK/ 5590330178 ENCODE Processing Pipeline ef8ca4c84b5a1db2ab74641da96ee1ae https://www.encodeproject.org/files/ENCFF014QVX/@@download/ENCFF014QVX.bam released s3://encode-public/2017/01/10/07d125c0-0e6b-46ab-a153-d2ee3e3e134a/ENCFF014QVX.bam ENCODE3 hg19 archived ENCFF984SEE bam bam unfiltered alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF978IRR/, /files/ENCFF576RZA/ 6504877029 ENCODE Processing Pipeline 93697ffee19e30d3f074340cb4f493a2 https://www.encodeproject.org/files/ENCFF984SEE/@@download/ENCFF984SEE.bam released s3://encode-public/2020/09/30/2ef1dcef-932b-4e4b-9d41-901c531f4f45/ENCFF984SEE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF276WEH bam bam alignments GRCh38 ENCSR113CMI Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF591UVY/, /files/ENCFF417XKK/ 5572384748 ENCODE Processing Pipeline 20a42c54159d6458de45287e2f26776d https://www.encodeproject.org/files/ENCFF276WEH/@@download/ENCFF276WEH.bam released s3://encode-public/2020/09/30/ddbd7a71-c5e1-42a5-9d3a-a6893e0bd57c/ENCFF276WEH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF176TXE fastq fastq reads ENCSR239PAR Control ChIP-seq /fly-donors/ENCDO202SKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1535271871 Kevin White, UChicago dd4f10c992eb6c37e2a142ce3ee64c02 https://www.encodeproject.org/files/ENCFF176TXE/@@download/ENCFF176TXE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/ddca7525-e778-41ab-9f56-1e4863ef84e7/ENCFF176TXE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF065TJT bam bam alignments dm3 ENCSR239PAR Control ChIP-seq /fly-donors/ENCDO202SKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF176TXE/ 1960289413 Kevin White, UChicago 1f6fa7943c5e21766fc046feda7bcddd https://www.encodeproject.org/files/ENCFF065TJT/@@download/ENCFF065TJT.bam released s3://encode-public/2017/06/18/2b8f4c77-5fd7-466e-b09c-3f3f165618c0/ENCFF065TJT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF731EQK bam bam alignments dm6 ENCSR239PAR Control ChIP-seq /fly-donors/ENCDO202SKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF176TXE/ 1939211583 Kevin White, UChicago e3aa21a2235905f912b654e4e577204d https://www.encodeproject.org/files/ENCFF731EQK/@@download/ENCFF731EQK.bam released s3://encode-public/2017/06/28/78648d5d-fec7-4bcd-99d7-21b2ca95a00b/ENCFF731EQK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF242SUU bigWig bigWig signal of unique reads dm3 ENCSR239PAR Control ChIP-seq /fly-donors/ENCDO202SKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF065TJT/ 15894294 Kevin White, UChicago 11a3e5adc403f3894841261c0d3c5528 https://www.encodeproject.org/files/ENCFF242SUU/@@download/ENCFF242SUU.bigWig released s3://encode-public/2017/06/29/8e126901-248e-4b22-a185-1c5e5aaad827/ENCFF242SUU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF871YBS bigWig bigWig read-depth normalized signal dm3 ENCSR239PAR Control ChIP-seq /fly-donors/ENCDO202SKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF065TJT/ 15948708 Kevin White, UChicago 02f058add99e5db8ee7792ea58e49d72 https://www.encodeproject.org/files/ENCFF871YBS/@@download/ENCFF871YBS.bigWig released s3://encode-public/2017/06/29/fb7cde56-7f54-44c6-8e03-8cfc17c0fb7e/ENCFF871YBS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF576YLH bigWig bigWig read-depth normalized signal dm6 ENCSR239PAR Control ChIP-seq /fly-donors/ENCDO202SKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF731EQK/ 17969513 Kevin White, UChicago ed094b0cb878b41a1139bae82b540283 https://www.encodeproject.org/files/ENCFF576YLH/@@download/ENCFF576YLH.bigWig released s3://encode-public/2017/06/30/42638b6d-27dd-4022-80cb-95de770e2696/ENCFF576YLH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF057FNP bigWig bigWig signal of unique reads dm6 ENCSR239PAR Control ChIP-seq /fly-donors/ENCDO202SKL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF731EQK/ 17874309 Kevin White, UChicago fb651678b7c7e685ef9cb17bfaacae9a https://www.encodeproject.org/files/ENCFF057FNP/@@download/ENCFF057FNP.bigWig released s3://encode-public/2017/06/30/7f0edd9f-2f48-46cf-8881-f2be8932b71b/ENCFF057FNP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF689ATO fastq fastq reads ENCSR518DKF Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF433FVA/ 2290559682 Michael Snyder, Stanford 0bd1c35931a45a9bf5a3581487372d3a SRA:SRR14105345 https://www.encodeproject.org/files/ENCFF689ATO/@@download/ENCFF689ATO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/51982b24-7f12-4f52-b495-bb7d41a3d219/ENCFF689ATO.fastq.gz ENCFF433FVA fastq fastq reads ENCSR518DKF Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF689ATO/ 1988298027 Michael Snyder, Stanford 4f00cc511423ef67824cf6c9f5a4370f SRA:SRR14105345 https://www.encodeproject.org/files/ENCFF433FVA/@@download/ENCFF433FVA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/c43eafc6-4449-4608-ae73-19a707528d8e/ENCFF433FVA.fastq.gz ENCFF792DER bam bam unfiltered alignments GRCh38 ENCSR518DKF Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF433FVA/, /files/ENCFF689ATO/ 4537332444 ENCODE Processing Pipeline 05fd487dce884d95caf6700400a1731e https://www.encodeproject.org/files/ENCFF792DER/@@download/ENCFF792DER.bam released s3://encode-public/2020/04/21/8db3f295-6290-4e86-8931-719d5278510f/ENCFF792DER.bam ENCODE4 v1.4.0 GRCh38 released ENCFF137NTQ bam bam alignments GRCh38 ENCSR518DKF Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF433FVA/, /files/ENCFF689ATO/ 3865890224 ENCODE Processing Pipeline 86c2e057ba480841f146d8764131c876 https://www.encodeproject.org/files/ENCFF137NTQ/@@download/ENCFF137NTQ.bam released s3://encode-public/2020/04/21/3524e575-1ecb-42aa-ace7-714e15789740/ENCFF137NTQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF059KCL fastq fastq reads ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1100253559 Zhiping Weng, UMass 96feeaee7ef53d1b460e564f9ff5d4ee SRA:SRR1045832 https://www.encodeproject.org/files/ENCFF059KCL/@@download/ENCFF059KCL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/2a544ef9-7938-44ce-aaeb-dbbfc21f67c5/ENCFF059KCL.fastq.gz mild to moderate bottlenecking, low read length ENCFF216BKY fastq fastq reads ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 3110239697 Zhiping Weng, UMass d7515dd6424c5e7d9d8ed90e1c64eaa5 SRA:SRR578709 https://www.encodeproject.org/files/ENCFF216BKY/@@download/ENCFF216BKY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/4437f8c3-4240-4b33-b6a5-00272dd4e831/ENCFF216BKY.fastq.gz mild to moderate bottlenecking, low read length ENCFF111TLE bam bam unfiltered alignments GRCh38 ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF216BKY/, /files/ENCFF110MCL/, /files/ENCFF059KCL/ 4914733519 ENCODE Processing Pipeline 087a23d15c121ffb64ff09f3cc4748d4 https://www.encodeproject.org/files/ENCFF111TLE/@@download/ENCFF111TLE.bam released s3://encode-public/2020/10/09/9219e693-ad76-47b9-a0db-0b9a7dde421f/ENCFF111TLE.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF592FAH bam bam unfiltered alignments hg19 ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF216BKY/, /files/ENCFF807MUK/, /files/ENCFF059KCL/ 5053418017 ENCODE Processing Pipeline c8be7702d9cd0e97b30c32501026ddb3 https://www.encodeproject.org/files/ENCFF592FAH/@@download/ENCFF592FAH.bam released s3://encode-public/2017/03/21/8fdc22da-1297-4772-ace8-06c6d39757ea/ENCFF592FAH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF250FVZ bam bam alignments hg19 ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF216BKY/, /files/ENCFF807MUK/, /files/ENCFF059KCL/ 2907064834 ENCODE Processing Pipeline 01e9b1028acfb8fe6aaa260f5a5d7a71 https://www.encodeproject.org/files/ENCFF250FVZ/@@download/ENCFF250FVZ.bam released s3://encode-public/2017/03/21/c0d8c8cd-9795-42ba-9a54-a09c6f7c5f22/ENCFF250FVZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF022OWN bam bam unfiltered alignments GRCh38 ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF216BKY/, /files/ENCFF643CGH/, /files/ENCFF059KCL/ 5077182188 ENCODE Processing Pipeline c4258ffeed590fe57d9d64e537af7b4e https://www.encodeproject.org/files/ENCFF022OWN/@@download/ENCFF022OWN.bam released s3://encode-public/2017/03/21/161efe4d-5ce1-4332-806c-3f7a67037926/ENCFF022OWN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF616JVU bam bam alignments GRCh38 ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF216BKY/, /files/ENCFF643CGH/, /files/ENCFF059KCL/ 2906784107 ENCODE Processing Pipeline 6350d7b455fe982d92ddfb89f7ad8880 https://www.encodeproject.org/files/ENCFF616JVU/@@download/ENCFF616JVU.bam released s3://encode-public/2017/03/21/2ebebb31-ec26-4b5c-8db9-eda21b8fa801/ENCFF616JVU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF941KOX bam bam alignments GRCh38 ENCSR163UEW Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0008450 psoas muscle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF216BKY/, /files/ENCFF110MCL/, /files/ENCFF059KCL/ 3237136004 ENCODE Processing Pipeline 5cdea8a61e8fc9eb090c37764b72ef13 https://www.encodeproject.org/files/ENCFF941KOX/@@download/ENCFF941KOX.bam released s3://encode-public/2020/10/09/bc9165a2-e2f3-4414-a1de-aa4f12aa7fb6/ENCFF941KOX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF309ISS bam bam unfiltered alignments hg19 ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF969JRS/, /files/ENCFF467ZVS/ 5856631051 ENCODE Processing Pipeline 699cb487b6a15d16bcc206381d3fad2f https://www.encodeproject.org/files/ENCFF309ISS/@@download/ENCFF309ISS.bam released s3://encode-public/2018/02/21/f792d269-0eba-47f0-8446-7cf4121214f9/ENCFF309ISS.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF467ZVS fastq fastq reads ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF969JRS/ 2614857500 Michael Snyder, Stanford 0687fa9d108a8ef7fb155099ac344050 SRA:SRR5112358 https://www.encodeproject.org/files/ENCFF467ZVS/@@download/ENCFF467ZVS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/854cc7ac-77a0-408e-9ef7-93232d7bf9f5/ENCFF467ZVS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF969JRS fastq fastq reads ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF467ZVS/ 2781342973 Michael Snyder, Stanford 7da01ff983c498cc80a6d7c9038bbb2b SRA:SRR5112358 https://www.encodeproject.org/files/ENCFF969JRS/@@download/ENCFF969JRS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/99530edf-7a25-4bfa-90db-1b96e8c59c6a/ENCFF969JRS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF548ERH bam bam alignments hg19 ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF969JRS/, /files/ENCFF467ZVS/ 4803940941 ENCODE Processing Pipeline eafe7852078e1420261214200352c04d https://www.encodeproject.org/files/ENCFF548ERH/@@download/ENCFF548ERH.bam released s3://encode-public/2016/01/15/d94c9fa2-26ca-40ed-a6fc-e5dfe2eca6b1/ENCFF548ERH.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF423TQJ bam bam alignments GRCh38 ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF969JRS/, /files/ENCFF467ZVS/, /files/ENCFF643CGH/ 4809292289 ENCODE Processing Pipeline d01c5ca4d2e642442ee29c6b27e2e531 https://www.encodeproject.org/files/ENCFF423TQJ/@@download/ENCFF423TQJ.bam released s3://encode-public/2016/05/06/9f981865-addc-41a3-bfc6-cb05128d3002/ENCFF423TQJ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF200PJM bam bam unfiltered alignments GRCh38 ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF969JRS/, /files/ENCFF467ZVS/, /files/ENCFF643CGH/ 5865356683 ENCODE Processing Pipeline f3ff646af44864dda7dddde2a4e7d747 https://www.encodeproject.org/files/ENCFF200PJM/@@download/ENCFF200PJM.bam released s3://encode-public/2016/05/06/9999d2bd-7d4b-41a3-96a8-00632a853bb7/ENCFF200PJM.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF274BRV bam bam alignments GRCh38 ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF969JRS/, /files/ENCFF467ZVS/ 4701435790 ENCODE Processing Pipeline df4d3068bef34b397eff16fdb02fb601 https://www.encodeproject.org/files/ENCFF274BRV/@@download/ENCFF274BRV.bam released s3://encode-public/2020/06/13/2bccbc9c-0462-4189-9f9f-2a7b29dfdb4f/ENCFF274BRV.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF248WJZ bam bam unfiltered alignments GRCh38 ENCSR978IXJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:DDX20'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11218/'], '@type': ['Target', 'Item'], 'label': 'DDX20', 'title': 'DDX20 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'a89b9f45-7bd1-48ed-b6b4-a7175525a5e5', 'schema_version': '14', 'name': 'DDX20-human', '@id': '/targets/DDX20-human/', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF969JRS/, /files/ENCFF467ZVS/ 5841581693 ENCODE Processing Pipeline 4d881fd44a95dd17ed2808609c005ebf https://www.encodeproject.org/files/ENCFF248WJZ/@@download/ENCFF248WJZ.bam released s3://encode-public/2020/06/13/cd77f769-9e9c-45e4-bfc0-830b0f64a250/ENCFF248WJZ.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF938KQE fastq fastq reads ENCSR540THM Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 647760285 Kevin White, UChicago 551b61d74176884dc605dc4d7128641f https://www.encodeproject.org/files/ENCFF938KQE/@@download/ENCFF938KQE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/c6fcbcec-cec3-4678-806a-fa17e6718ef2/ENCFF938KQE.fastq.gz missing external identifiers ENCFF077CZT bam bam alignments dm3 ENCSR540THM Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF938KQE/ 820574741 Kevin White, UChicago 8852656fdd8f95d79d306da6ebfb4e4a https://www.encodeproject.org/files/ENCFF077CZT/@@download/ENCFF077CZT.bam released s3://encode-public/2017/06/19/4f81052a-e2a8-4201-9bd6-ca771e7b1e9d/ENCFF077CZT.bam Lab custom dm3 archived missing external identifiers ENCFF647DZL bam bam alignments dm6 ENCSR540THM Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF938KQE/ 814765680 Kevin White, UChicago 7913dffb9f9bd10bbb8f9d111a9fd11f https://www.encodeproject.org/files/ENCFF647DZL/@@download/ENCFF647DZL.bam released s3://encode-public/2017/06/29/234d7d4c-33b6-4987-ae0f-4dbeae0bd4aa/ENCFF647DZL.bam Lab custom dm6 released missing external identifiers ENCFF281AWE bigWig bigWig signal of unique reads dm3 ENCSR540THM Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF077CZT/ 15545761 Kevin White, UChicago bee4b417f75c2d6dc51902d1a1107721 https://www.encodeproject.org/files/ENCFF281AWE/@@download/ENCFF281AWE.bigWig released s3://encode-public/2017/06/29/1abd3573-9ee0-4dd7-985a-3d508a7f1c89/ENCFF281AWE.bigWig Lab custom dm3 archived missing external identifiers ENCFF004WTU bigWig bigWig read-depth normalized signal dm3 ENCSR540THM Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF077CZT/ 15511205 Kevin White, UChicago b25b6234ab50c2c758c7bf6c07f68b31 https://www.encodeproject.org/files/ENCFF004WTU/@@download/ENCFF004WTU.bigWig released s3://encode-public/2017/06/29/43fe3711-ec3b-44d7-96ae-ba79cdc2b00d/ENCFF004WTU.bigWig Lab custom dm3 archived missing external identifiers ENCFF849QGO bigWig bigWig read-depth normalized signal dm6 ENCSR540THM Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF647DZL/ 17216577 Kevin White, UChicago 89c7cc2ddd485e703b87b02d55ff7190 https://www.encodeproject.org/files/ENCFF849QGO/@@download/ENCFF849QGO.bigWig released s3://encode-public/2017/06/30/e50e2146-2392-46a9-b93d-b561c7320669/ENCFF849QGO.bigWig Lab custom dm6 released missing external identifiers ENCFF095PHC bigWig bigWig signal of unique reads dm6 ENCSR540THM Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF647DZL/ 17261828 Kevin White, UChicago f0efe141d60e5b5a53db59629f9d7d4c https://www.encodeproject.org/files/ENCFF095PHC/@@download/ENCFF095PHC.bigWig released s3://encode-public/2017/06/30/4ccdea54-ebaf-462c-bf68-df400b8ffa56/ENCFF095PHC.bigWig Lab custom dm6 released missing external identifiers ENCFF833ZOA fastq fastq reads ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 single-ended 844462617 Xiang-Dong Fu, UCSD 67dc05229287ff22ff503451b075b1d7 SRA:SRR6213230 https://www.encodeproject.org/files/ENCFF833ZOA/@@download/ENCFF833ZOA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/2a4d4daf-98b7-45f7-b9a0-a4bb6815a89b/ENCFF833ZOA.fastq.gz low read length ENCFF183RWB fastq fastq reads ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 single-ended 1223551670 Xiang-Dong Fu, UCSD 54f22c63a4800b15ae14461ada772898 SRA:SRR6213231 https://www.encodeproject.org/files/ENCFF183RWB/@@download/ENCFF183RWB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/da63bb71-31db-4eb4-a03b-fe06e90737e6/ENCFF183RWB.fastq.gz low read length ENCFF413LCN bam bam alignments hg19 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF183RWB/ 1302691977 ENCODE Processing Pipeline 8d6d05bdd1d06084b92d95abd3030d85 https://www.encodeproject.org/files/ENCFF413LCN/@@download/ENCFF413LCN.bam released s3://encode-public/2016/02/26/60d8f5d9-c2f0-4249-bf08-196eab332bb1/ENCFF413LCN.bam ENCODE3 hg19 archived low read length ENCFF466LEC bam bam alignments hg19 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF833ZOA/ 919072699 ENCODE Processing Pipeline e4aa0a5ff5b71252d169e7b6762b5146 https://www.encodeproject.org/files/ENCFF466LEC/@@download/ENCFF466LEC.bam released s3://encode-public/2016/02/26/f0323d33-2220-4790-a6f3-e4ca03348598/ENCFF466LEC.bam ENCODE3 hg19 archived low read length ENCFF848AQB bam bam unfiltered alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF833ZOA/ 1215467177 ENCODE Processing Pipeline 350041f7b2168c1d9f657ab838ece16c https://www.encodeproject.org/files/ENCFF848AQB/@@download/ENCFF848AQB.bam released s3://encode-public/2016/05/06/a3055bda-b3e8-41f4-bd9c-bf54f68db2fd/ENCFF848AQB.bam ENCODE3 GRCh38 archived low read length ENCFF323AVQ bam bam unfiltered alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF183RWB/ 1742746809 ENCODE Processing Pipeline faf1e4248d99ab2673713c93365f3d6e https://www.encodeproject.org/files/ENCFF323AVQ/@@download/ENCFF323AVQ.bam released s3://encode-public/2016/05/06/f1d79232-6337-4baa-852e-30ad5245c90c/ENCFF323AVQ.bam ENCODE3 GRCh38 archived low read length ENCFF936VXD bam bam alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF833ZOA/ 918122811 ENCODE Processing Pipeline bdef5d745116a41748da100bf79a278a https://www.encodeproject.org/files/ENCFF936VXD/@@download/ENCFF936VXD.bam released s3://encode-public/2016/05/06/0b114864-c214-487f-9dd3-4cd8b3814137/ENCFF936VXD.bam ENCODE3 GRCh38 archived low read length ENCFF092OEQ bam bam alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF183RWB/ 1301469637 ENCODE Processing Pipeline cc8ad098e1fd9afa673fd00baa8f4c8d https://www.encodeproject.org/files/ENCFF092OEQ/@@download/ENCFF092OEQ.bam released s3://encode-public/2016/05/06/d9058342-caed-4271-ad07-34cbd29cf10d/ENCFF092OEQ.bam ENCODE3 GRCh38 archived low read length ENCFF584DCN bam bam unfiltered alignments hg19 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF183RWB/ 1736693994 ENCODE Processing Pipeline aa37fd68fbd3a11283451ca75da653d6 https://www.encodeproject.org/files/ENCFF584DCN/@@download/ENCFF584DCN.bam released s3://encode-public/2017/02/14/812d525a-9ecc-4c53-83c2-5c1b90039105/ENCFF584DCN.bam ENCODE3 hg19 archived low read length ENCFF616UEH bam bam unfiltered alignments hg19 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF833ZOA/ 1211655313 ENCODE Processing Pipeline 5e422859ec96499862b5f5d5708d6979 https://www.encodeproject.org/files/ENCFF616UEH/@@download/ENCFF616UEH.bam released s3://encode-public/2017/02/14/7f779878-46c3-4f45-b4bd-5a2b42729365/ENCFF616UEH.bam ENCODE3 hg19 archived low read length ENCFF932JHA bam bam unfiltered alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF833ZOA/ 1203570850 ENCODE Processing Pipeline de4b5bef85d87eb867cc52deb4abd286 https://www.encodeproject.org/files/ENCFF932JHA/@@download/ENCFF932JHA.bam released s3://encode-public/2020/10/27/bae0a133-f7d5-4395-babc-2a414bd0956b/ENCFF932JHA.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF863RCR bam bam unfiltered alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF183RWB/ 1724399275 ENCODE Processing Pipeline f5d27fcba41f7450dceca80bc5c7702f https://www.encodeproject.org/files/ENCFF863RCR/@@download/ENCFF863RCR.bam released s3://encode-public/2020/10/27/fc655ee1-82bc-4b2b-8d31-66025b0935eb/ENCFF863RCR.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF453JAK bam bam alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF833ZOA/ 967249784 ENCODE Processing Pipeline db18932d11ab30f7f888d8152240d621 https://www.encodeproject.org/files/ENCFF453JAK/@@download/ENCFF453JAK.bam released s3://encode-public/2020/10/27/f28f49fa-2598-4d8f-ac9e-ac6e57004ec7/ENCFF453JAK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF097XVE bam bam alignments GRCh38 ENCSR331OJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF183RWB/ 1374177195 ENCODE Processing Pipeline acd933130448c3692d4f9df46ab0a64a https://www.encodeproject.org/files/ENCFF097XVE/@@download/ENCFF097XVE.bam released s3://encode-public/2020/10/27/332fe6bf-2650-454a-88a1-30babc218178/ENCFF097XVE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF878ZRN fastq fastq reads ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 50 single-ended 4004989695 Kevin White, UChicago 6d2d77acfc12970b3748cfd4986fea6f https://www.encodeproject.org/files/ENCFF878ZRN/@@download/ENCFF878ZRN.fastq.gz Illumina HiSeq 2000 /files/ENCFF184WZS/ released s3://encode-public/2016/08/24/9c89473a-e8b5-46ef-9de9-2e1d08a13194/ENCFF878ZRN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF348OXP fastq fastq reads ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 50 single-ended 4004989695 Kevin White, UChicago e141c480ef1156a5d4e8afd2a89e385d https://www.encodeproject.org/files/ENCFF348OXP/@@download/ENCFF348OXP.fastq.gz Illumina HiSeq 2000 /files/ENCFF179TMO/ released s3://encode-public/2016/08/24/f754ddf7-197f-4755-821a-b1220976babf/ENCFF348OXP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF732VPR bam bam alignments dm3 ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 50 /files/ENCFF348OXP/, /files/ENCFF059UHX/ 5083411822 Kevin White, UChicago c9bc2d5f89db104070238afe85ee2ed7 https://www.encodeproject.org/files/ENCFF732VPR/@@download/ENCFF732VPR.bam released s3://encode-public/2017/12/23/4385a539-1f4b-4f57-9d06-37718e093566/ENCFF732VPR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF238NJX bam bam alignments dm6 ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 50 /files/ENCFF348OXP/, /files/ENCFF479RCH/ 5026382579 Kevin White, UChicago 5faacc25817430b3473ff4531d5935df https://www.encodeproject.org/files/ENCFF238NJX/@@download/ENCFF238NJX.bam released s3://encode-public/2017/12/24/7ec8cc8d-a515-471a-b8cf-a74e0c80e48b/ENCFF238NJX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF690FRX bigWig bigWig read-depth normalized signal dm3 ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF732VPR/ 15958738 Kevin White, UChicago 312b637a19d094706a5e327b31fbb4c9 https://www.encodeproject.org/files/ENCFF690FRX/@@download/ENCFF690FRX.bigWig released s3://encode-public/2017/12/24/4b2d77a0-38d4-413c-adb9-67438e9af9b3/ENCFF690FRX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF620MHI bigWig bigWig signal of unique reads dm3 ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF732VPR/ 15970614 Kevin White, UChicago a8a4e29c053398b8713bcf586fb310cd https://www.encodeproject.org/files/ENCFF620MHI/@@download/ENCFF620MHI.bigWig released s3://encode-public/2017/12/24/7d2efab3-4d5c-412d-96e3-48c4e70a684d/ENCFF620MHI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF510OPE bigWig bigWig signal of unique reads dm6 ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF238NJX/ 17907673 Kevin White, UChicago db9e8de2eb4c31699f01089ba6f8ed16 https://www.encodeproject.org/files/ENCFF510OPE/@@download/ENCFF510OPE.bigWig released s3://encode-public/2017/12/24/4fa6192b-fa29-47e3-ad90-b78d73a17e4a/ENCFF510OPE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF050JEU bigWig bigWig read-depth normalized signal dm6 ENCSR402MJH Control ChIP-seq /fly-donors/ENCDO513FRW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32567/'], '@type': ['Target', 'Item'], 'name': 'exd-dmelanogaster', 'label': 'exd', '@id': '/targets/exd-dmelanogaster/', 'title': 'exd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '56448fc3-050a-455e-8ff3-25df8cb4f308', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF238NJX/ 17902225 Kevin White, UChicago e2ae62e9d50ab39fcbc55768e6b7ec68 https://www.encodeproject.org/files/ENCFF050JEU/@@download/ENCFF050JEU.bigWig released s3://encode-public/2017/12/24/df0b3720-cf03-4d94-b735-3610b91545a7/ENCFF050JEU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF138TAO fastq fastq reads ENCSR148LYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 390143615 Kevin White, UChicago cfc9debf011db7a6852bd1da7043fc92 https://www.encodeproject.org/files/ENCFF138TAO/@@download/ENCFF138TAO.fastq.gz Illumina Genome Analyzer /files/ENCFF021LPR/ released s3://encode-public/2017/06/15/f6f01206-f8d9-493e-9770-4fb4263658c2/ENCFF138TAO.fastq.gz ENCFF131ADH bam bam alignments dm3 ENCSR148LYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF059UHX/, /files/ENCFF138TAO/ 396637980 Kevin White, UChicago 4bae22d3237ee69f24ea89f39e3a0933 https://www.encodeproject.org/files/ENCFF131ADH/@@download/ENCFF131ADH.bam released s3://encode-public/2017/06/20/08e14020-0954-46d1-b24f-efdcd69b1ca8/ENCFF131ADH.bam Lab custom dm3 archived ENCFF932UPU bam bam alignments dm6 ENCSR148LYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF479RCH/, /files/ENCFF138TAO/ 380223551 Kevin White, UChicago 2c602b8c3bd1d7176d8e57031e1ba089 https://www.encodeproject.org/files/ENCFF932UPU/@@download/ENCFF932UPU.bam released s3://encode-public/2017/06/28/1bcd731e-4562-4c0a-b1ad-5e4bd96a85f2/ENCFF932UPU.bam Lab custom dm6 released ENCFF676TOP bigWig bigWig signal of unique reads dm3 ENCSR148LYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF131ADH/ 12052495 Kevin White, UChicago 7d00854a0e5546d344d62a4c9babdfc0 https://www.encodeproject.org/files/ENCFF676TOP/@@download/ENCFF676TOP.bigWig released s3://encode-public/2017/06/29/c383d48a-09cd-4aaf-b938-f6d1e0237f06/ENCFF676TOP.bigWig Lab custom dm3 archived ENCFF520AEZ bigWig bigWig read-depth normalized signal dm3 ENCSR148LYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF131ADH/ 12044113 Kevin White, UChicago d03270960a356f37d522265363acd984 https://www.encodeproject.org/files/ENCFF520AEZ/@@download/ENCFF520AEZ.bigWig released s3://encode-public/2017/06/29/9a44298e-7384-46b3-b9af-ec1caeae076a/ENCFF520AEZ.bigWig Lab custom dm3 archived ENCFF071CHP bigWig bigWig read-depth normalized signal dm6 ENCSR148LYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF932UPU/ 12729021 Kevin White, UChicago cef2d6705b9c1ed58d132532cedc49ca https://www.encodeproject.org/files/ENCFF071CHP/@@download/ENCFF071CHP.bigWig released s3://encode-public/2017/06/30/3f3a6be2-135a-49e5-a634-85cca84bb140/ENCFF071CHP.bigWig Lab custom dm6 released ENCFF875HGE bigWig bigWig signal of unique reads dm6 ENCSR148LYB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF932UPU/ 12737949 Kevin White, UChicago 34edd299bc1c61b4ece47c13b9ebd72a https://www.encodeproject.org/files/ENCFF875HGE/@@download/ENCFF875HGE.bigWig released s3://encode-public/2017/06/30/a5b2fe32-aea2-4b8a-bfa1-a78f406dcbba/ENCFF875HGE.bigWig Lab custom dm6 released ENCFF454JAI fastq fastq reads ENCSR233YTV Control ChIP-seq /fly-donors/ENCDO027TIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43566/'], '@type': ['Target', 'Item'], 'name': 'CG7928-dmelanogaster', 'label': 'CG7928', '@id': '/targets/CG7928-dmelanogaster/', 'title': 'CG7928 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ed1abb18-8732-49df-80c5-84a99ffd494e', 'status': 'released'} dm3 3R 25848479 25869422 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2082724377 Kevin White, UChicago 2f67ac8fc8b58835753a01ce08c037dd https://www.encodeproject.org/files/ENCFF454JAI/@@download/ENCFF454JAI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/ac6463b4-79c7-4df8-b9ae-77fa3f420845/ENCFF454JAI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF418MNM bam bam alignments dm3 ENCSR233YTV Control ChIP-seq /fly-donors/ENCDO027TIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43566/'], '@type': ['Target', 'Item'], 'name': 'CG7928-dmelanogaster', 'label': 'CG7928', '@id': '/targets/CG7928-dmelanogaster/', 'title': 'CG7928 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ed1abb18-8732-49df-80c5-84a99ffd494e', 'status': 'released'} dm3 3R 25848479 25869422 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF454JAI/, /files/ENCFF059UHX/ 2857941365 Kevin White, UChicago 4449268f749ab631ed7e175971526f03 https://www.encodeproject.org/files/ENCFF418MNM/@@download/ENCFF418MNM.bam released s3://encode-public/2016/12/22/36f71887-4ac0-489d-bc16-2ee9539d9f13/ENCFF418MNM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF636UKJ bam bam alignments dm6 ENCSR233YTV Control ChIP-seq /fly-donors/ENCDO027TIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43566/'], '@type': ['Target', 'Item'], 'name': 'CG7928-dmelanogaster', 'label': 'CG7928', '@id': '/targets/CG7928-dmelanogaster/', 'title': 'CG7928 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ed1abb18-8732-49df-80c5-84a99ffd494e', 'status': 'released'} dm3 3R 25848479 25869422 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF454JAI/, /files/ENCFF479RCH/ 2832926888 Kevin White, UChicago c0c69be5c0bfa6c513887b27906e163e https://www.encodeproject.org/files/ENCFF636UKJ/@@download/ENCFF636UKJ.bam released s3://encode-public/2016/12/22/1e6ee69b-d4cc-4238-b816-0067d9f0bc01/ENCFF636UKJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF666ZXC bigWig bigWig signal of unique reads dm3 ENCSR233YTV Control ChIP-seq /fly-donors/ENCDO027TIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43566/'], '@type': ['Target', 'Item'], 'name': 'CG7928-dmelanogaster', 'label': 'CG7928', '@id': '/targets/CG7928-dmelanogaster/', 'title': 'CG7928 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ed1abb18-8732-49df-80c5-84a99ffd494e', 'status': 'released'} dm3 3R 25848479 25869422 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF418MNM/ 15663743 Kevin White, UChicago 75edd226c9efee563d196f9dcdeff50b https://www.encodeproject.org/files/ENCFF666ZXC/@@download/ENCFF666ZXC.bigWig released s3://encode-public/2017/01/03/048755f5-26d6-4c12-badf-72f2e2e06163/ENCFF666ZXC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF751QDS bigWig bigWig read-depth normalized signal dm3 ENCSR233YTV Control ChIP-seq /fly-donors/ENCDO027TIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43566/'], '@type': ['Target', 'Item'], 'name': 'CG7928-dmelanogaster', 'label': 'CG7928', '@id': '/targets/CG7928-dmelanogaster/', 'title': 'CG7928 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ed1abb18-8732-49df-80c5-84a99ffd494e', 'status': 'released'} dm3 3R 25848479 25869422 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF418MNM/ 15695263 Kevin White, UChicago 7ee44ede75f64c478036bafc8050844f https://www.encodeproject.org/files/ENCFF751QDS/@@download/ENCFF751QDS.bigWig released s3://encode-public/2017/01/03/187dc845-ceb6-440f-a30e-0ce85bcdcc53/ENCFF751QDS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF704XIE bigWig bigWig read-depth normalized signal dm6 ENCSR233YTV Control ChIP-seq /fly-donors/ENCDO027TIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43566/'], '@type': ['Target', 'Item'], 'name': 'CG7928-dmelanogaster', 'label': 'CG7928', '@id': '/targets/CG7928-dmelanogaster/', 'title': 'CG7928 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ed1abb18-8732-49df-80c5-84a99ffd494e', 'status': 'released'} dm3 3R 25848479 25869422 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF636UKJ/ 17746818 Kevin White, UChicago 095c64dd640eedc2847dfe6af0b8548b https://www.encodeproject.org/files/ENCFF704XIE/@@download/ENCFF704XIE.bigWig released s3://encode-public/2017/01/04/7e502011-bfbf-41ce-9b0f-3142138320d8/ENCFF704XIE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF823UOA bigWig bigWig signal of unique reads dm6 ENCSR233YTV Control ChIP-seq /fly-donors/ENCDO027TIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43566/'], '@type': ['Target', 'Item'], 'name': 'CG7928-dmelanogaster', 'label': 'CG7928', '@id': '/targets/CG7928-dmelanogaster/', 'title': 'CG7928 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ed1abb18-8732-49df-80c5-84a99ffd494e', 'status': 'released'} dm3 3R 25848479 25869422 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF636UKJ/ 17704860 Kevin White, UChicago 15a7692a81e5005e513a45beed1819b2 https://www.encodeproject.org/files/ENCFF823UOA/@@download/ENCFF823UOA.bigWig released s3://encode-public/2017/01/04/88538adf-f2ca-4eba-bcc1-1a092c1ccfb9/ENCFF823UOA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF288UBP fastq fastq reads ENCSR194XZB Control ChIP-seq /worm-donors/ENCDO255PLK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179877/'], '@type': ['Target', 'Item'], 'name': 'ceh-24-celegans', 'label': 'ceh-24', '@id': '/targets/ceh-24-celegans/', 'title': 'ceh-24 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e2d9567-1345-4290-9e3b-3956effcf190', 'status': 'released'} ce11 V 13803202 13837062 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 2155417973 Kevin White, UChicago 5e11c789215596b0554be16af3b1ef9d https://www.encodeproject.org/files/ENCFF288UBP/@@download/ENCFF288UBP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/2835e144-ee61-4395-a7c2-613d7af63b89/ENCFF288UBP.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF393MMA bam bam alignments ce10 ENCSR194XZB Control ChIP-seq /worm-donors/ENCDO255PLK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179877/'], '@type': ['Target', 'Item'], 'name': 'ceh-24-celegans', 'label': 'ceh-24', '@id': '/targets/ceh-24-celegans/', 'title': 'ceh-24 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e2d9567-1345-4290-9e3b-3956effcf190', 'status': 'released'} ce11 V 13803202 13837062 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF288UBP/, /files/ENCFF987UMF/ 2867257850 Kevin White, UChicago 1b3ae2fa79f5d2e41f54f3e0aecf12b3 https://www.encodeproject.org/files/ENCFF393MMA/@@download/ENCFF393MMA.bam released s3://encode-public/2016/10/04/c0fc5de5-d93f-446e-bb32-60d80a5be47a/ENCFF393MMA.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF691UIH bam bam alignments ce11 ENCSR194XZB Control ChIP-seq /worm-donors/ENCDO255PLK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179877/'], '@type': ['Target', 'Item'], 'name': 'ceh-24-celegans', 'label': 'ceh-24', '@id': '/targets/ceh-24-celegans/', 'title': 'ceh-24 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e2d9567-1345-4290-9e3b-3956effcf190', 'status': 'released'} ce11 V 13803202 13837062 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF288UBP/, /files/ENCFF586MOL/ 2869600448 Kevin White, UChicago f484464b934c1c16ccf888c1f6f587b0 https://www.encodeproject.org/files/ENCFF691UIH/@@download/ENCFF691UIH.bam released s3://encode-public/2016/10/05/530ff896-4b6e-4820-a223-9936751c1a89/ENCFF691UIH.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF128ZQW bigWig bigWig read-depth normalized signal ce10 ENCSR194XZB Control ChIP-seq /worm-donors/ENCDO255PLK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179877/'], '@type': ['Target', 'Item'], 'name': 'ceh-24-celegans', 'label': 'ceh-24', '@id': '/targets/ceh-24-celegans/', 'title': 'ceh-24 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e2d9567-1345-4290-9e3b-3956effcf190', 'status': 'released'} ce11 V 13803202 13837062 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF393MMA/ 9955264 Kevin White, UChicago 9c0d756c6bb4e758439cf1fea33b7c5c https://www.encodeproject.org/files/ENCFF128ZQW/@@download/ENCFF128ZQW.bigWig released s3://encode-public/2016/10/06/2e072508-6051-45c0-ab18-838e1b469b45/ENCFF128ZQW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF454GFY bigWig bigWig signal of unique reads ce10 ENCSR194XZB Control ChIP-seq /worm-donors/ENCDO255PLK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179877/'], '@type': ['Target', 'Item'], 'name': 'ceh-24-celegans', 'label': 'ceh-24', '@id': '/targets/ceh-24-celegans/', 'title': 'ceh-24 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e2d9567-1345-4290-9e3b-3956effcf190', 'status': 'released'} ce11 V 13803202 13837062 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF393MMA/ 9952082 Kevin White, UChicago 00f02d1703f4ec42c2acab0e62c15787 https://www.encodeproject.org/files/ENCFF454GFY/@@download/ENCFF454GFY.bigWig released s3://encode-public/2016/10/06/451202bc-dfcf-489a-a58a-ca308d60c2a5/ENCFF454GFY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF946XOD bigWig bigWig signal of unique reads ce11 ENCSR194XZB Control ChIP-seq /worm-donors/ENCDO255PLK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179877/'], '@type': ['Target', 'Item'], 'name': 'ceh-24-celegans', 'label': 'ceh-24', '@id': '/targets/ceh-24-celegans/', 'title': 'ceh-24 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e2d9567-1345-4290-9e3b-3956effcf190', 'status': 'released'} ce11 V 13803202 13837062 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF691UIH/ 9952087 Kevin White, UChicago 0d4f68fd2e4b5f1a69ed72a73094544e https://www.encodeproject.org/files/ENCFF946XOD/@@download/ENCFF946XOD.bigWig released s3://encode-public/2016/10/06/3a101ce8-3066-4edd-ad1d-0fa0bcbc5d9f/ENCFF946XOD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF283LOZ bigWig bigWig read-depth normalized signal ce11 ENCSR194XZB Control ChIP-seq /worm-donors/ENCDO255PLK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179877/'], '@type': ['Target', 'Item'], 'name': 'ceh-24-celegans', 'label': 'ceh-24', '@id': '/targets/ceh-24-celegans/', 'title': 'ceh-24 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e2d9567-1345-4290-9e3b-3956effcf190', 'status': 'released'} ce11 V 13803202 13837062 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF691UIH/ 9955269 Kevin White, UChicago 6f07f6f8cceccdf7634dc19cb12a1f62 https://www.encodeproject.org/files/ENCFF283LOZ/@@download/ENCFF283LOZ.bigWig released s3://encode-public/2016/10/06/3724fb42-85f0-428d-a899-2e2352e836e6/ENCFF283LOZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF185ALP fastq fastq reads ENCSR815ASQ Control ChIP-seq /worm-donors/ENCDO857YJS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175319/'], '@type': ['Target', 'Item'], 'name': 'Y22D7AL.16-celegans', 'label': 'Y22D7AL.16', '@id': '/targets/Y22D7AL.16-celegans/', 'title': 'Y22D7AL.16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '75601c93-98fe-44b0-b479-d000dacf0005', 'status': 'released'} ce11 III 1650936 1688816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 492795139 Kevin White, UChicago 7a5804e65442434d60618dfaa9748a05 https://www.encodeproject.org/files/ENCFF185ALP/@@download/ENCFF185ALP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/fc31ff2b-c34d-4403-acb9-934ef6befec6/ENCFF185ALP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF868VZB bam bam alignments ce10 ENCSR815ASQ Control ChIP-seq /worm-donors/ENCDO857YJS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175319/'], '@type': ['Target', 'Item'], 'name': 'Y22D7AL.16-celegans', 'label': 'Y22D7AL.16', '@id': '/targets/Y22D7AL.16-celegans/', 'title': 'Y22D7AL.16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '75601c93-98fe-44b0-b479-d000dacf0005', 'status': 'released'} ce11 III 1650936 1688816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF185ALP/, /files/ENCFF987UMF/ 635338417 Kevin White, UChicago d4517fac26d10f2b3b04c6c28c0e6946 https://www.encodeproject.org/files/ENCFF868VZB/@@download/ENCFF868VZB.bam released s3://encode-public/2016/10/04/6476c61a-977e-448e-9131-091213946500/ENCFF868VZB.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF955JFW bam bam alignments ce11 ENCSR815ASQ Control ChIP-seq /worm-donors/ENCDO857YJS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175319/'], '@type': ['Target', 'Item'], 'name': 'Y22D7AL.16-celegans', 'label': 'Y22D7AL.16', '@id': '/targets/Y22D7AL.16-celegans/', 'title': 'Y22D7AL.16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '75601c93-98fe-44b0-b479-d000dacf0005', 'status': 'released'} ce11 III 1650936 1688816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF185ALP/, /files/ENCFF586MOL/ 635876107 Kevin White, UChicago ed4e98910ccf9c37c56813742305d957 https://www.encodeproject.org/files/ENCFF955JFW/@@download/ENCFF955JFW.bam released s3://encode-public/2016/10/05/bc858068-a4f1-4131-a15e-b93790334207/ENCFF955JFW.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF662ZWI bigWig bigWig read-depth normalized signal ce10 ENCSR815ASQ Control ChIP-seq /worm-donors/ENCDO857YJS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175319/'], '@type': ['Target', 'Item'], 'name': 'Y22D7AL.16-celegans', 'label': 'Y22D7AL.16', '@id': '/targets/Y22D7AL.16-celegans/', 'title': 'Y22D7AL.16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '75601c93-98fe-44b0-b479-d000dacf0005', 'status': 'released'} ce11 III 1650936 1688816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF868VZB/ 9947999 Kevin White, UChicago 9d06d0e2059bed61ae5dcbd3e5a7ebde https://www.encodeproject.org/files/ENCFF662ZWI/@@download/ENCFF662ZWI.bigWig released s3://encode-public/2016/10/06/88c5a8f9-91c9-4870-a5fa-33a4ee41509a/ENCFF662ZWI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF523EAA bigWig bigWig signal of unique reads ce10 ENCSR815ASQ Control ChIP-seq /worm-donors/ENCDO857YJS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175319/'], '@type': ['Target', 'Item'], 'name': 'Y22D7AL.16-celegans', 'label': 'Y22D7AL.16', '@id': '/targets/Y22D7AL.16-celegans/', 'title': 'Y22D7AL.16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '75601c93-98fe-44b0-b479-d000dacf0005', 'status': 'released'} ce11 III 1650936 1688816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF868VZB/ 9928563 Kevin White, UChicago b7eb9c46311b0b4158007ac8108ff4ca https://www.encodeproject.org/files/ENCFF523EAA/@@download/ENCFF523EAA.bigWig released s3://encode-public/2016/10/06/fc154359-aadf-40bd-88a6-7ee0ff1229ae/ENCFF523EAA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF481JCY bigWig bigWig read-depth normalized signal ce11 ENCSR815ASQ Control ChIP-seq /worm-donors/ENCDO857YJS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175319/'], '@type': ['Target', 'Item'], 'name': 'Y22D7AL.16-celegans', 'label': 'Y22D7AL.16', '@id': '/targets/Y22D7AL.16-celegans/', 'title': 'Y22D7AL.16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '75601c93-98fe-44b0-b479-d000dacf0005', 'status': 'released'} ce11 III 1650936 1688816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF955JFW/ 9947994 Kevin White, UChicago f811bab991bedfbe7804b69b6addf8c4 https://www.encodeproject.org/files/ENCFF481JCY/@@download/ENCFF481JCY.bigWig released s3://encode-public/2016/10/06/8a1d8c3c-e63d-4bb0-b412-8595e487bbac/ENCFF481JCY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF580KQJ bigWig bigWig signal of unique reads ce11 ENCSR815ASQ Control ChIP-seq /worm-donors/ENCDO857YJS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175319/'], '@type': ['Target', 'Item'], 'name': 'Y22D7AL.16-celegans', 'label': 'Y22D7AL.16', '@id': '/targets/Y22D7AL.16-celegans/', 'title': 'Y22D7AL.16 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '75601c93-98fe-44b0-b479-d000dacf0005', 'status': 'released'} ce11 III 1650936 1688816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF955JFW/ 9928561 Kevin White, UChicago df8071f016bf8581ec0398f8e44395f2 https://www.encodeproject.org/files/ENCFF580KQJ/@@download/ENCFF580KQJ.bigWig released s3://encode-public/2016/10/06/602a3a87-0512-4148-9150-ee5e49d55222/ENCFF580KQJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF574QPI fastq fastq reads ENCSR317QFT Control ChIP-seq /fly-donors/ENCDO698XFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34516/'], '@type': ['Target', 'Item'], 'name': 'YL-1-dmelanogaster', 'label': 'YL-1', '@id': '/targets/YL-1-dmelanogaster/', 'title': 'YL-1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '3e072016-53d2-41fd-8582-3a50284ab4f9', 'status': 'released'} dm3 2L 10959606 10983007 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 881565996 Kevin White, UChicago 2243a9063040e22568b55487512a2e0f https://www.encodeproject.org/files/ENCFF574QPI/@@download/ENCFF574QPI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/da24a79f-6eda-4c9d-ba60-40887a472046/ENCFF574QPI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF696NJN bam bam alignments dm3 ENCSR317QFT Control ChIP-seq /fly-donors/ENCDO698XFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34516/'], '@type': ['Target', 'Item'], 'name': 'YL-1-dmelanogaster', 'label': 'YL-1', '@id': '/targets/YL-1-dmelanogaster/', 'title': 'YL-1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '3e072016-53d2-41fd-8582-3a50284ab4f9', 'status': 'released'} dm3 2L 10959606 10983007 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF574QPI/, /files/ENCFF059UHX/ 1177994707 Kevin White, UChicago df14f95d9ef5c198f71de652b6f8e950 https://www.encodeproject.org/files/ENCFF696NJN/@@download/ENCFF696NJN.bam released s3://encode-public/2016/12/23/a1ad3266-0593-4614-9232-0a58a138f503/ENCFF696NJN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF924SGX bam bam alignments dm6 ENCSR317QFT Control ChIP-seq /fly-donors/ENCDO698XFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34516/'], '@type': ['Target', 'Item'], 'name': 'YL-1-dmelanogaster', 'label': 'YL-1', '@id': '/targets/YL-1-dmelanogaster/', 'title': 'YL-1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '3e072016-53d2-41fd-8582-3a50284ab4f9', 'status': 'released'} dm3 2L 10959606 10983007 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF574QPI/, /files/ENCFF479RCH/ 1164642791 Kevin White, UChicago a06e6d29ee8c5da7da3d87fc34c9a99b https://www.encodeproject.org/files/ENCFF924SGX/@@download/ENCFF924SGX.bam released s3://encode-public/2016/12/23/d337f171-c33f-4bab-9bea-fb9c1c4b27fa/ENCFF924SGX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF676LQD bigWig bigWig read-depth normalized signal dm3 ENCSR317QFT Control ChIP-seq /fly-donors/ENCDO698XFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34516/'], '@type': ['Target', 'Item'], 'name': 'YL-1-dmelanogaster', 'label': 'YL-1', '@id': '/targets/YL-1-dmelanogaster/', 'title': 'YL-1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '3e072016-53d2-41fd-8582-3a50284ab4f9', 'status': 'released'} dm3 2L 10959606 10983007 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF696NJN/ 15445755 Kevin White, UChicago 42154396dc84d49102e0307cc0e1d0b2 https://www.encodeproject.org/files/ENCFF676LQD/@@download/ENCFF676LQD.bigWig released s3://encode-public/2017/01/04/6e586299-6f82-49ec-867b-a77de9ee8e97/ENCFF676LQD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF859SPL bigWig bigWig signal of unique reads dm3 ENCSR317QFT Control ChIP-seq /fly-donors/ENCDO698XFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34516/'], '@type': ['Target', 'Item'], 'name': 'YL-1-dmelanogaster', 'label': 'YL-1', '@id': '/targets/YL-1-dmelanogaster/', 'title': 'YL-1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '3e072016-53d2-41fd-8582-3a50284ab4f9', 'status': 'released'} dm3 2L 10959606 10983007 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF696NJN/ 15420955 Kevin White, UChicago d24c77cdafbefcd3c25cdeab9e207d7b https://www.encodeproject.org/files/ENCFF859SPL/@@download/ENCFF859SPL.bigWig released s3://encode-public/2017/01/04/1b135a55-a001-48a8-ae3f-147513d64d98/ENCFF859SPL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF537ZKQ bigWig bigWig signal of unique reads dm6 ENCSR317QFT Control ChIP-seq /fly-donors/ENCDO698XFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34516/'], '@type': ['Target', 'Item'], 'name': 'YL-1-dmelanogaster', 'label': 'YL-1', '@id': '/targets/YL-1-dmelanogaster/', 'title': 'YL-1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '3e072016-53d2-41fd-8582-3a50284ab4f9', 'status': 'released'} dm3 2L 10959606 10983007 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF924SGX/ 17503371 Kevin White, UChicago 29c105315272d8f481c2e4f7f9fab0c0 https://www.encodeproject.org/files/ENCFF537ZKQ/@@download/ENCFF537ZKQ.bigWig released s3://encode-public/2017/01/04/39b098fc-411f-446c-bf5c-2b71323c2ce6/ENCFF537ZKQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF715WPR bigWig bigWig read-depth normalized signal dm6 ENCSR317QFT Control ChIP-seq /fly-donors/ENCDO698XFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34516/'], '@type': ['Target', 'Item'], 'name': 'YL-1-dmelanogaster', 'label': 'YL-1', '@id': '/targets/YL-1-dmelanogaster/', 'title': 'YL-1 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '3e072016-53d2-41fd-8582-3a50284ab4f9', 'status': 'released'} dm3 2L 10959606 10983007 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF924SGX/ 17554860 Kevin White, UChicago 28cc35bc2ece7aed85826da6da822653 https://www.encodeproject.org/files/ENCFF715WPR/@@download/ENCFF715WPR.bigWig released s3://encode-public/2017/01/04/d4c39287-9fc7-4963-b5d9-7bbc53fd3e26/ENCFF715WPR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF490JGY bam bam unfiltered alignments hg19 ENCSR414HEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55769/'], '@type': ['Target', 'Item'], 'name': 'ZNF83-human', 'label': 'ZNF83', '@id': '/targets/ZNF83-human/', 'title': 'ZNF83 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40336504-0c46-44e2-ad73-05c2e28ed1d6', 'status': 'released'} hg19 19 53059078 53284301 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF278ATS/, /files/ENCFF807MUK/ 1497030653 ENCODE Processing Pipeline 4bfa6865957c61953dcf5a817f5d7881 https://www.encodeproject.org/files/ENCFF490JGY/@@download/ENCFF490JGY.bam released s3://encode-public/2018/02/21/e2c29ee4-78d0-4f30-bad7-d66b4cf5b21e/ENCFF490JGY.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF278ATS fastq fastq reads ENCSR414HEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55769/'], '@type': ['Target', 'Item'], 'name': 'ZNF83-human', 'label': 'ZNF83', '@id': '/targets/ZNF83-human/', 'title': 'ZNF83 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40336504-0c46-44e2-ad73-05c2e28ed1d6', 'status': 'released'} hg19 19 53059078 53284301 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1416429137 Kevin White, UChicago 8da8a890aca2f2c720743deb3912f79b SRA:SRR6213091 https://www.encodeproject.org/files/ENCFF278ATS/@@download/ENCFF278ATS.fastq.gz Illumina HiSeq 2500 /files/ENCFF299IIG/, /files/ENCFF144MPP/ released s3://encode-public/2016/03/14/f9b6980a-83a8-4c1b-96fe-c352de969c59/ENCFF278ATS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF285NOA bam bam alignments hg19 ENCSR414HEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55769/'], '@type': ['Target', 'Item'], 'name': 'ZNF83-human', 'label': 'ZNF83', '@id': '/targets/ZNF83-human/', 'title': 'ZNF83 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40336504-0c46-44e2-ad73-05c2e28ed1d6', 'status': 'released'} hg19 19 53059078 53284301 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF278ATS/, /files/ENCFF807MUK/ 1175957181 ENCODE Processing Pipeline 00dc68589f660a24ebfd195a53d99f7e https://www.encodeproject.org/files/ENCFF285NOA/@@download/ENCFF285NOA.bam released s3://encode-public/2016/04/23/88716a39-cad9-4105-9dc4-74f5c93be71d/ENCFF285NOA.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF351MPC bam bam unfiltered alignments GRCh38 ENCSR414HEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55769/'], '@type': ['Target', 'Item'], 'name': 'ZNF83-human', 'label': 'ZNF83', '@id': '/targets/ZNF83-human/', 'title': 'ZNF83 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40336504-0c46-44e2-ad73-05c2e28ed1d6', 'status': 'released'} hg19 19 53059078 53284301 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF278ATS/, /files/ENCFF643CGH/ 1502536367 ENCODE Processing Pipeline ee793402da2904fe2af78a7a229c1fa3 https://www.encodeproject.org/files/ENCFF351MPC/@@download/ENCFF351MPC.bam released s3://encode-public/2016/05/06/ba627098-36f4-4c41-98b4-8f3719d4c68b/ENCFF351MPC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF568OMP bam bam alignments GRCh38 ENCSR414HEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55769/'], '@type': ['Target', 'Item'], 'name': 'ZNF83-human', 'label': 'ZNF83', '@id': '/targets/ZNF83-human/', 'title': 'ZNF83 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40336504-0c46-44e2-ad73-05c2e28ed1d6', 'status': 'released'} hg19 19 53059078 53284301 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF278ATS/, /files/ENCFF643CGH/ 1175411097 ENCODE Processing Pipeline 94c4de26a123593882b5aad95363db9f https://www.encodeproject.org/files/ENCFF568OMP/@@download/ENCFF568OMP.bam released s3://encode-public/2016/05/06/29225689-5673-4e92-9882-28909fb1442a/ENCFF568OMP.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF574QIF bam bam alignments GRCh38 ENCSR414HEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55769/'], '@type': ['Target', 'Item'], 'name': 'ZNF83-human', 'label': 'ZNF83', '@id': '/targets/ZNF83-human/', 'title': 'ZNF83 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40336504-0c46-44e2-ad73-05c2e28ed1d6', 'status': 'released'} hg19 19 53059078 53284301 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF278ATS/, /files/ENCFF110MCL/ 1211535738 ENCODE Processing Pipeline 26059cecb2302832e7857aa30a993e51 https://www.encodeproject.org/files/ENCFF574QIF/@@download/ENCFF574QIF.bam released s3://encode-public/2020/10/27/f2fbc605-8fb1-40fe-aced-fcb3a7a3136e/ENCFF574QIF.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF118EIQ bam bam unfiltered alignments GRCh38 ENCSR414HEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55769/'], '@type': ['Target', 'Item'], 'name': 'ZNF83-human', 'label': 'ZNF83', '@id': '/targets/ZNF83-human/', 'title': 'ZNF83 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40336504-0c46-44e2-ad73-05c2e28ed1d6', 'status': 'released'} hg19 19 53059078 53284301 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF278ATS/, /files/ENCFF110MCL/ 1466548985 ENCODE Processing Pipeline cb1b75e34879e26282309ae2e8fcd102 https://www.encodeproject.org/files/ENCFF118EIQ/@@download/ENCFF118EIQ.bam released s3://encode-public/2020/10/27/dde630ff-9ffc-4ea8-a7f4-83d4688cb7ec/ENCFF118EIQ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF295VZD fastq fastq reads ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 single-ended 2837688674 Bradley Bernstein, Broad 56e09ef87335948c242c1f5a06abb30e SRA:SRR5339536 https://www.encodeproject.org/files/ENCFF295VZD/@@download/ENCFF295VZD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/18/cf529aed-17e4-4c57-bd02-197c7041893d/ENCFF295VZD.fastq.gz ENCFF275WVX bam bam unfiltered alignments GRCh38 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF295VZD/ 3285149257 ENCODE Processing Pipeline fb6ef9526c35734968f97dc161096660 https://www.encodeproject.org/files/ENCFF275WVX/@@download/ENCFF275WVX.bam released s3://encode-public/2016/05/25/801e0e8f-210f-4219-a55f-e8966a153c00/ENCFF275WVX.bam ENCODE3 GRCh38 archived ENCFF644ZVV bam bam alignments GRCh38 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF295VZD/ 2760624156 ENCODE Processing Pipeline 8d460cefb555ba7120f155654013cb5e https://www.encodeproject.org/files/ENCFF644ZVV/@@download/ENCFF644ZVV.bam released s3://encode-public/2016/05/25/02fd3168-498f-473e-b725-b2f6da4d4223/ENCFF644ZVV.bam ENCODE3 GRCh38 archived ENCFF494QXC bam bam unfiltered alignments hg19 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF295VZD/ 3275993249 ENCODE Processing Pipeline fc1e967de2032354bbd202147539e564 https://www.encodeproject.org/files/ENCFF494QXC/@@download/ENCFF494QXC.bam released s3://encode-public/2016/10/26/518b5021-01f7-4221-8121-ad204e3eefe8/ENCFF494QXC.bam ENCODE3 hg19 archived ENCFF959YHF bam bam alignments hg19 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF295VZD/ 2756334439 ENCODE Processing Pipeline c178c447c1023106f8c821361601571e https://www.encodeproject.org/files/ENCFF959YHF/@@download/ENCFF959YHF.bam released s3://encode-public/2016/10/26/c24859c4-da3c-43be-9f70-a210172440c0/ENCFF959YHF.bam ENCODE3 hg19 archived ENCFF626CAQ bam bam unfiltered alignments GRCh38 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF295VZD/, /files/ENCFF110MCL/ 3314606214 ENCODE Processing Pipeline c76d46403a9e7ea2f570b7fc9ab25f5e https://www.encodeproject.org/files/ENCFF626CAQ/@@download/ENCFF626CAQ.bam released s3://encode-public/2020/08/20/5cd9ba16-514b-4524-85df-0a7e2c040f40/ENCFF626CAQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF935TSY bam bam alignments GRCh38 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 76 /files/ENCFF295VZD/, /files/ENCFF110MCL/ 2839753240 ENCODE Processing Pipeline b2df6773e0db0ee5e329aaf72dcfbd6e https://www.encodeproject.org/files/ENCFF935TSY/@@download/ENCFF935TSY.bam released s3://encode-public/2020/08/20/353f164a-acc2-4c03-b36e-af3f5d60219e/ENCFF935TSY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF059APK bam bam unfiltered alignments GRCh38 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 72 /files/ENCFF295VZD/, /files/ENCFF110MCL/ 3213961160 ENCODE Processing Pipeline 6f70bb494349a44ce0ebebe77c45b568 https://www.encodeproject.org/files/ENCFF059APK/@@download/ENCFF059APK.bam released s3://encode-public/2020/12/10/47d40394-40e8-4b92-81d7-a91f6f6f7a22/ENCFF059APK.bam ENCODE4 v1.6.1 GRCh38 released ENCFF902ZGU bam bam alignments GRCh38 ENCSR888RBQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-05-26 ENCODE 200-600 1 1_1 72 /files/ENCFF295VZD/, /files/ENCFF110MCL/ 2742929494 ENCODE Processing Pipeline 59c0f98c7afd5c4da9fc583c994f02ca https://www.encodeproject.org/files/ENCFF902ZGU/@@download/ENCFF902ZGU.bam released s3://encode-public/2020/12/10/4777ae3f-e367-468b-b842-87fde7d55b03/ENCFF902ZGU.bam ENCODE4 v1.6.1 GRCh38 released ENCFF748FSB fastq fastq reads ENCSR861LKS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB40'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9923/'], '@type': ['Target', 'Item'], 'label': 'ZBTB40', 'title': 'ZBTB40 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5cccde1a-bf5f-4935-9e5e-52ae495b02e5', 'schema_version': '14', 'name': 'ZBTB40-human', '@id': '/targets/ZBTB40-human/', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 990019489 Kevin White, UChicago 9b540c34c8692812cabd565aa5cf4e0a SRA:SRR10049680 https://www.encodeproject.org/files/ENCFF748FSB/@@download/ENCFF748FSB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/14/99830c1b-aaab-41b3-be7f-c87340c700a8/ENCFF748FSB.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF895FSD bam bam unfiltered alignments GRCh38 ENCSR861LKS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB40'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9923/'], '@type': ['Target', 'Item'], 'label': 'ZBTB40', 'title': 'ZBTB40 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5cccde1a-bf5f-4935-9e5e-52ae495b02e5', 'schema_version': '14', 'name': 'ZBTB40-human', '@id': '/targets/ZBTB40-human/', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF748FSB/ 1091006257 ENCODE Processing Pipeline 542f9548e599f109d267e2ba57b4975f https://www.encodeproject.org/files/ENCFF895FSD/@@download/ENCFF895FSD.bam released s3://encode-public/2016/08/30/8049e8de-cc90-4435-b03d-ef21400218f5/ENCFF895FSD.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF758WOL bam bam alignments GRCh38 ENCSR861LKS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB40'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9923/'], '@type': ['Target', 'Item'], 'label': 'ZBTB40', 'title': 'ZBTB40 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5cccde1a-bf5f-4935-9e5e-52ae495b02e5', 'schema_version': '14', 'name': 'ZBTB40-human', '@id': '/targets/ZBTB40-human/', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF748FSB/ 856907304 ENCODE Processing Pipeline 097bede981cdb692eb3d58adaecd4690 https://www.encodeproject.org/files/ENCFF758WOL/@@download/ENCFF758WOL.bam released s3://encode-public/2016/08/30/d24a3e78-34dc-46ba-99ca-a9a9636bbea1/ENCFF758WOL.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF781XCP bam bam unfiltered alignments hg19 ENCSR861LKS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB40'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9923/'], '@type': ['Target', 'Item'], 'label': 'ZBTB40', 'title': 'ZBTB40 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5cccde1a-bf5f-4935-9e5e-52ae495b02e5', 'schema_version': '14', 'name': 'ZBTB40-human', '@id': '/targets/ZBTB40-human/', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF748FSB/ 1087322721 ENCODE Processing Pipeline b4e2d3e9b20e5d6739adbaf92171ae7a https://www.encodeproject.org/files/ENCFF781XCP/@@download/ENCFF781XCP.bam released s3://encode-public/2016/08/30/f6b7a68a-a318-459b-b9af-ceed22dc8b91/ENCFF781XCP.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF266BSJ bam bam alignments hg19 ENCSR861LKS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB40'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9923/'], '@type': ['Target', 'Item'], 'label': 'ZBTB40', 'title': 'ZBTB40 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5cccde1a-bf5f-4935-9e5e-52ae495b02e5', 'schema_version': '14', 'name': 'ZBTB40-human', '@id': '/targets/ZBTB40-human/', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF748FSB/ 857280317 ENCODE Processing Pipeline 8baffbc20c8ba626a851dc627d810df9 https://www.encodeproject.org/files/ENCFF266BSJ/@@download/ENCFF266BSJ.bam released s3://encode-public/2016/08/30/14d74a73-5f3b-42e1-8eea-69b62b537113/ENCFF266BSJ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF462XTO bam bam unfiltered alignments GRCh38 ENCSR861LKS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB40'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9923/'], '@type': ['Target', 'Item'], 'label': 'ZBTB40', 'title': 'ZBTB40 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5cccde1a-bf5f-4935-9e5e-52ae495b02e5', 'schema_version': '14', 'name': 'ZBTB40-human', '@id': '/targets/ZBTB40-human/', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF748FSB/, /files/ENCFF110MCL/ 1087761143 ENCODE Processing Pipeline 2419a1a8d586c89305f9ec8b53520a9e https://www.encodeproject.org/files/ENCFF462XTO/@@download/ENCFF462XTO.bam released s3://encode-public/2020/10/27/59a19d49-3e25-49a0-9772-266ae735cce7/ENCFF462XTO.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF393JVE bam bam alignments GRCh38 ENCSR861LKS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB40'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9923/'], '@type': ['Target', 'Item'], 'label': 'ZBTB40', 'title': 'ZBTB40 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5cccde1a-bf5f-4935-9e5e-52ae495b02e5', 'schema_version': '14', 'name': 'ZBTB40-human', '@id': '/targets/ZBTB40-human/', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF748FSB/, /files/ENCFF110MCL/ 906575659 ENCODE Processing Pipeline 471e06df5e79b3fe7d42a60d6b7b7d1a https://www.encodeproject.org/files/ENCFF393JVE/@@download/ENCFF393JVE.bam released s3://encode-public/2020/10/27/34e9f1eb-1a1a-4bf3-adbc-83c7e315b3d5/ENCFF393JVE.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF556CVK tagAlign tagAlign alignments hg19 ENCSR793ISY Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/SRR1270448/, /files/SRR1270486/, /files/SRR1270580/ 229106758 Anshul Kundaje, Stanford 1cfca026c008de312a2de3e20a433085 https://www.encodeproject.org/files/ENCFF556CVK/@@download/ENCFF556CVK.tagAlign.gz archived s3://encode-public/2016/03/30/3d9a7de2-7fcd-45e6-ab4b-f188b6c8bf08/ENCFF556CVK.tagAlign.gz Lab custom hg19 archived low read length ENCFF022RSI bam bam redacted unfiltered alignments GRCh38 ENCSR793ISY Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF643CGH/, /files/ENCFF451EVL/, /files/ENCFF042ZHQ/, /files/ENCFF429SEQ/ 455013537 ENCODE Processing Pipeline a8940bab70333707786b6a31548b4a87 https://www.encodeproject.org/files/ENCFF022RSI/@@download/ENCFF022RSI.bam released s3://encode-public/2017/10/16/8afaac0c-765b-41f4-a3c4-cf403a51d7d4/ENCFF022RSI.bam ENCODE3 GRCh38 archived low read length ENCFF931ZAL bam bam redacted alignments GRCh38 ENCSR793ISY Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF643CGH/, /files/ENCFF451EVL/, /files/ENCFF042ZHQ/, /files/ENCFF429SEQ/ 244859122 ENCODE Processing Pipeline 5d27f9065f43ebc15affaf8c976e09b2 https://www.encodeproject.org/files/ENCFF931ZAL/@@download/ENCFF931ZAL.bam released s3://encode-public/2017/10/16/4071aba7-13cb-4bb6-8dd4-b9af9de6638e/ENCFF931ZAL.bam ENCODE3 GRCh38 archived low read length ENCFF460ELP bam bam redacted unfiltered alignments hg19 ENCSR793ISY Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF451EVL/, /files/ENCFF042ZHQ/, /files/ENCFF429SEQ/ 299991215 ENCODE Processing Pipeline df90b48564445c06c6e73e7ad01fb44f https://www.encodeproject.org/files/ENCFF460ELP/@@download/ENCFF460ELP.bam released s3://encode-public/2018/01/20/c6642f26-4862-47c7-b49c-f1da44ae3994/ENCFF460ELP.bam ENCODE3 hg19 archived low read length ENCFF073ZXQ bam bam redacted alignments hg19 ENCSR793ISY Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF451EVL/, /files/ENCFF042ZHQ/, /files/ENCFF429SEQ/ 196344230 ENCODE Processing Pipeline 710c7cc3e6f8f60344732121e8ca9df2 https://www.encodeproject.org/files/ENCFF073ZXQ/@@download/ENCFF073ZXQ.bam released s3://encode-public/2018/01/20/d3d6faa5-cc37-4f7b-8c4e-1d076533e3a0/ENCFF073ZXQ.bam ENCODE3 hg19 archived low read length ENCFF899KWP bam bam redacted alignments GRCh38 ENCSR793ISY Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF154MPI/, /files/ENCFF110MCL/, /files/ENCFF706GBK/, /files/ENCFF815FMU/ 1267799237 ENCODE Processing Pipeline fb2a77af6719fd77f66f50c72ed03fb7 https://www.encodeproject.org/files/ENCFF899KWP/@@download/ENCFF899KWP.bam released s3://encode-public/2021/01/28/4adf1547-6526-4f9e-9d69-3e1842a392de/ENCFF899KWP.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF412GAM fastq fastq reads ENCSR618JZG Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF988DPT/ 2394762682 Michael Snyder, Stanford 3155fc7d03b700878569930badc43711 SRA:SRR14636840 https://www.encodeproject.org/files/ENCFF412GAM/@@download/ENCFF412GAM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7e2b04ce-0e06-417f-95fe-3599cc65622a/ENCFF412GAM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF988DPT fastq fastq reads ENCSR618JZG Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF412GAM/ 2640057894 Michael Snyder, Stanford 3cd4cc58558ec8ceb583770b0113463a SRA:SRR14636840 https://www.encodeproject.org/files/ENCFF988DPT/@@download/ENCFF988DPT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/4502f48e-f44f-4946-90b6-edcace53bc9c/ENCFF988DPT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF214PRE bam bam alignments GRCh38 ENCSR618JZG Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF412GAM/, /files/ENCFF988DPT/ 3248058053 ENCODE Processing Pipeline 1447ced90e49e45a597d5b73a9c4c33e https://www.encodeproject.org/files/ENCFF214PRE/@@download/ENCFF214PRE.bam released s3://encode-public/2020/04/21/c0d3550a-d1d6-4c91-aa34-dba10bb9a01c/ENCFF214PRE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF218EDR bam bam unfiltered alignments GRCh38 ENCSR618JZG Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF412GAM/, /files/ENCFF988DPT/ 4510252299 ENCODE Processing Pipeline fc987664e06079657543c7248450491a https://www.encodeproject.org/files/ENCFF218EDR/@@download/ENCFF218EDR.bam released s3://encode-public/2020/04/21/3a6ede6d-b010-44f9-9e5d-3f17cb252fe0/ENCFF218EDR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF936KBZ fastq fastq reads ENCSR210QQQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1022'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80764/'], '@type': ['Target', 'Item'], 'name': 'THAP7-human', 'label': 'THAP7', '@id': '/targets/THAP7-human/', 'title': 'THAP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7cec72-0501-4b77-b153-bd5357d26c9b', 'status': 'released'} DNA 2021-06-10 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF472CYL/ 2058731575 Michael Snyder, Stanford 988921e04a3fe09f6172e38d3d958125 SRA:SRR16810677 https://www.encodeproject.org/files/ENCFF936KBZ/@@download/ENCFF936KBZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF301IUQ/ released s3://encode-public/2019/01/08/48163af9-0ad2-4f80-9d43-dc62598e7ea8/ENCFF936KBZ.fastq.gz ENCFF472CYL fastq fastq reads ENCSR210QQQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1022'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80764/'], '@type': ['Target', 'Item'], 'name': 'THAP7-human', 'label': 'THAP7', '@id': '/targets/THAP7-human/', 'title': 'THAP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7cec72-0501-4b77-b153-bd5357d26c9b', 'status': 'released'} DNA 2021-06-10 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF936KBZ/ 2390684702 Michael Snyder, Stanford d23ecadb5d753071e20e8048437a6d58 SRA:SRR16810677 https://www.encodeproject.org/files/ENCFF472CYL/@@download/ENCFF472CYL.fastq.gz Illumina HiSeq 4000 /files/ENCFF854PPV/ released s3://encode-public/2019/01/08/d2dc82f7-34b3-4fdd-8b18-2f9dcf58ae7a/ENCFF472CYL.fastq.gz ENCFF192JZE bam bam alignments GRCh38 ENCSR210QQQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1022'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80764/'], '@type': ['Target', 'Item'], 'name': 'THAP7-human', 'label': 'THAP7', '@id': '/targets/THAP7-human/', 'title': 'THAP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7cec72-0501-4b77-b153-bd5357d26c9b', 'status': 'released'} DNA 2021-06-10 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF936KBZ/, /files/ENCFF472CYL/ 3670838377 ENCODE Processing Pipeline c8bbed2bbff0a30b1d121147d894f8e8 https://www.encodeproject.org/files/ENCFF192JZE/@@download/ENCFF192JZE.bam released s3://encode-public/2020/05/15/86e35763-f456-4258-8199-e89426fd00f7/ENCFF192JZE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF729DGS bam bam unfiltered alignments GRCh38 ENCSR210QQQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1022'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80764/'], '@type': ['Target', 'Item'], 'name': 'THAP7-human', 'label': 'THAP7', '@id': '/targets/THAP7-human/', 'title': 'THAP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7cec72-0501-4b77-b153-bd5357d26c9b', 'status': 'released'} DNA 2021-06-10 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF936KBZ/, /files/ENCFF472CYL/ 4603210058 ENCODE Processing Pipeline 04b6afc5a59c83bf777f7db0079813c1 https://www.encodeproject.org/files/ENCFF729DGS/@@download/ENCFF729DGS.bam released s3://encode-public/2020/05/15/b291c563-1fcf-4bc3-b3c3-a0cb30031e2b/ENCFF729DGS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF695OYT fastq fastq reads ENCSR426BBS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF597NGG/ 2687129744 Michael Snyder, Stanford fb269ff4f88df2f2677765581c248323 SRA:SRR14103369 https://www.encodeproject.org/files/ENCFF695OYT/@@download/ENCFF695OYT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/2f58072c-f6d1-42ec-aeb6-eb9bbc72e038/ENCFF695OYT.fastq.gz ENCFF597NGG fastq fastq reads ENCSR426BBS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF695OYT/ 2318369248 Michael Snyder, Stanford ca9afd4aafcd618200f76009164fac87 SRA:SRR14103369 https://www.encodeproject.org/files/ENCFF597NGG/@@download/ENCFF597NGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/8f1bb384-0ed8-493c-9d88-28ab2796e144/ENCFF597NGG.fastq.gz ENCFF440OLI bam bam alignments GRCh38 ENCSR426BBS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF597NGG/, /files/ENCFF695OYT/ 4200489626 ENCODE Processing Pipeline 14894a52f54a9f7fafca3c1fbefc87ba https://www.encodeproject.org/files/ENCFF440OLI/@@download/ENCFF440OLI.bam released s3://encode-public/2020/04/21/5a3b9366-589d-4e81-b018-591a96cd6e90/ENCFF440OLI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF928NDV bam bam unfiltered alignments GRCh38 ENCSR426BBS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF597NGG/, /files/ENCFF695OYT/ 5137834101 ENCODE Processing Pipeline eaa97fa38192ec8c3b8d33defd9c3155 https://www.encodeproject.org/files/ENCFF928NDV/@@download/ENCFF928NDV.bam released s3://encode-public/2020/04/21/3fdc2ef4-ec1b-482f-a7b0-31407f06b50d/ENCFF928NDV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF388FAT fastq fastq reads ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF413RZV/ 957311801 Richard Myers, HAIB 938c2688dfb5bf10eeaffb8e47710cba SRA:SRR6214171 https://www.encodeproject.org/files/ENCFF388FAT/@@download/ENCFF388FAT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/56133e64-d18a-47e2-b50c-cd5f34fa4cc0/ENCFF388FAT.fastq.gz low read depth ENCFF413RZV fastq fastq reads ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF388FAT/ 980622644 Richard Myers, HAIB c35b173feb7658f7b790c98a804a18bd SRA:SRR6214171 https://www.encodeproject.org/files/ENCFF413RZV/@@download/ENCFF413RZV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/7d73d4e2-3b0c-4362-a36f-e78d2094c5dc/ENCFF413RZV.fastq.gz low read depth ENCFF327HKG bam bam unfiltered alignments hg19 ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF413RZV/, /files/ENCFF807MUK/, /files/ENCFF388FAT/ 2360725757 ENCODE Processing Pipeline f95df26033564379668ce29dd87ca10e https://www.encodeproject.org/files/ENCFF327HKG/@@download/ENCFF327HKG.bam released s3://encode-public/2017/02/02/912aa48b-381d-4339-a890-0e4ccf7e4806/ENCFF327HKG.bam ENCODE3 hg19 archived low read depth ENCFF834KDL bam bam alignments hg19 ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF413RZV/, /files/ENCFF807MUK/, /files/ENCFF388FAT/ 1745158401 ENCODE Processing Pipeline 07da5a40b9137cf3638ef0061c3dd4bc https://www.encodeproject.org/files/ENCFF834KDL/@@download/ENCFF834KDL.bam released s3://encode-public/2017/02/02/f7d7248c-02a2-419d-a321-5cdd41eb4b60/ENCFF834KDL.bam ENCODE3 hg19 archived low read depth ENCFF820OLF bam bam unfiltered alignments GRCh38 ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF413RZV/, /files/ENCFF643CGH/, /files/ENCFF388FAT/ 2370286638 ENCODE Processing Pipeline 8f98f85eb91af4a3ade71b0627bbdd1d https://www.encodeproject.org/files/ENCFF820OLF/@@download/ENCFF820OLF.bam released s3://encode-public/2017/02/02/7bb1953f-1d53-43c3-a0fe-f59cff51f06c/ENCFF820OLF.bam ENCODE3 GRCh38 archived low read depth ENCFF462HXY bam bam alignments GRCh38 ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF413RZV/, /files/ENCFF643CGH/, /files/ENCFF388FAT/ 1747070670 ENCODE Processing Pipeline eadb99d67ca7fe3b55d2cf056e570441 https://www.encodeproject.org/files/ENCFF462HXY/@@download/ENCFF462HXY.bam released s3://encode-public/2017/02/02/02b05f37-9bfb-4cf1-b5a6-969d78aa32ac/ENCFF462HXY.bam ENCODE3 GRCh38 archived low read depth ENCFF663HXH bam bam unfiltered alignments GRCh38 ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF388FAT/, /files/ENCFF413RZV/ 2477572422 ENCODE Processing Pipeline bff40312a02c71fed9ab8a240746afb0 https://www.encodeproject.org/files/ENCFF663HXH/@@download/ENCFF663HXH.bam released s3://encode-public/2020/06/06/69fc2de2-70b7-47f8-9e5c-0fa50c11e79e/ENCFF663HXH.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF044JFL bam bam alignments GRCh38 ENCSR976HZM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF388FAT/, /files/ENCFF413RZV/ 1730945412 ENCODE Processing Pipeline 1fa7c8d0c56262a83e28ddc5644f1869 https://www.encodeproject.org/files/ENCFF044JFL/@@download/ENCFF044JFL.bam released s3://encode-public/2020/06/06/ce3ecce6-9d3a-4e6a-bb0a-87248d5b4528/ENCFF044JFL.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF143OPT fastq fastq reads ENCSR411AFQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF167ZBU/ 2226494399 Michael Snyder, Stanford 4adf4bdd1e3ee65f57a63d1da3d592b1 SRA:SRR14638546 https://www.encodeproject.org/files/ENCFF143OPT/@@download/ENCFF143OPT.fastq.gz Illumina HiSeq 4000 /files/ENCFF814DEV/ released s3://encode-public/2018/12/21/dba996e0-0628-474e-b94f-76359c0d1f4e/ENCFF143OPT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF167ZBU fastq fastq reads ENCSR411AFQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF143OPT/ 2661393252 Michael Snyder, Stanford 11909c7cb304d1b26c205d5f1eb2f75d SRA:SRR14638546 https://www.encodeproject.org/files/ENCFF167ZBU/@@download/ENCFF167ZBU.fastq.gz Illumina HiSeq 4000 /files/ENCFF644TSR/ released s3://encode-public/2018/12/21/cb955f99-f4ec-4696-aec1-e3c9f1d22ae0/ENCFF167ZBU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF102IGM bam bam unfiltered alignments GRCh38 ENCSR411AFQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF143OPT/, /files/ENCFF167ZBU/ 4322110991 ENCODE Processing Pipeline 30a8dd7b3113a025036106db93e0ddc0 https://www.encodeproject.org/files/ENCFF102IGM/@@download/ENCFF102IGM.bam released s3://encode-public/2020/04/21/d79a4812-310c-40db-8652-a0de72800f6f/ENCFF102IGM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF449SBS bam bam alignments GRCh38 ENCSR411AFQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF143OPT/, /files/ENCFF167ZBU/ 2649039631 ENCODE Processing Pipeline 613cad79069543be109c3307ccaa8728 https://www.encodeproject.org/files/ENCFF449SBS/@@download/ENCFF449SBS.bam released s3://encode-public/2020/04/21/c5efa9bd-078a-443d-879c-3fac4053a242/ENCFF449SBS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF890FGH tagAlign tagAlign alignments hg19 ENCSR247EGR Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172570/ 141315584 Anshul Kundaje, Stanford 97edfca1107af0067160cd42cfb41d53 https://www.encodeproject.org/files/ENCFF890FGH/@@download/ENCFF890FGH.tagAlign.gz archived s3://encode-public/2016/02/11/977ce229-6de0-4845-a45c-44d3b23439ce/ENCFF890FGH.tagAlign.gz Lab custom hg19 archived low read depth ENCFF823UAX bam bam redacted alignments GRCh38 ENCSR247EGR Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF520FVJ/, /files/ENCFF643CGH/ 218770042 ENCODE Processing Pipeline a7e421534319a7ccfd8e767153dd0cff https://www.encodeproject.org/files/ENCFF823UAX/@@download/ENCFF823UAX.bam released s3://encode-public/2017/11/09/514d8135-cb02-4cc6-8edf-8392893d32a7/ENCFF823UAX.bam ENCODE3 GRCh38 archived low read depth ENCFF927CLE bam bam redacted unfiltered alignments GRCh38 ENCSR247EGR Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF520FVJ/, /files/ENCFF643CGH/ 284745680 ENCODE Processing Pipeline 25a532d15902ef38583fd8a59cf58098 https://www.encodeproject.org/files/ENCFF927CLE/@@download/ENCFF927CLE.bam released s3://encode-public/2017/11/09/44a46d52-03b8-4ca2-8965-4ccb004bff48/ENCFF927CLE.bam ENCODE3 GRCh38 archived low read depth ENCFF453RWG bam bam redacted unfiltered alignments hg19 ENCSR247EGR Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF520FVJ/, /files/ENCFF807MUK/ 279913651 ENCODE Processing Pipeline f93ea95ec250a0bdbf152c73714795ca https://www.encodeproject.org/files/ENCFF453RWG/@@download/ENCFF453RWG.bam released s3://encode-public/2018/01/20/94c27df0-fdb7-48d2-b592-64a8dcd4fece/ENCFF453RWG.bam ENCODE3 hg19 archived low read depth ENCFF068BMZ bam bam redacted alignments hg19 ENCSR247EGR Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF520FVJ/, /files/ENCFF807MUK/ 218501852 ENCODE Processing Pipeline 718b59195cdbd995f77d9cc551c3b75e https://www.encodeproject.org/files/ENCFF068BMZ/@@download/ENCFF068BMZ.bam released s3://encode-public/2018/01/20/fa670cf4-dcbf-4b1a-a674-81f7941826d3/ENCFF068BMZ.bam ENCODE3 hg19 archived low read depth ENCFF206WMC bam bam redacted alignments GRCh38 ENCSR247EGR Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF737UIE/, /files/ENCFF110MCL/ 1299135343 ENCODE Processing Pipeline 200218ba3a7e0b48b4a312435e952f39 https://www.encodeproject.org/files/ENCFF206WMC/@@download/ENCFF206WMC.bam released s3://encode-public/2021/01/28/704a78de-feb4-4d98-afdf-8b83984c83c6/ENCFF206WMC.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF426FHM fastq fastq reads ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 1 /files/ENCFF273OIE/ 3227822130 Michael Snyder, Stanford 18942cd0fa0bd6a4a98f3b5e4e6e564c SRA:SRR14636375 https://www.encodeproject.org/files/ENCFF426FHM/@@download/ENCFF426FHM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/9c7a4694-dcdf-4171-9022-432f93ff64cb/ENCFF426FHM.fastq.gz ENCFF273OIE fastq fastq reads ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 2 /files/ENCFF426FHM/ 3444634032 Michael Snyder, Stanford 2bc09e9b882da87455c9f0a8b104e7c5 SRA:SRR14636375 https://www.encodeproject.org/files/ENCFF273OIE/@@download/ENCFF273OIE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/56410ca3-e179-467b-ad7f-9d0185c7a86d/ENCFF273OIE.fastq.gz ENCFF407YXO fastq fastq reads ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 1 /files/ENCFF235IFO/ 3196869776 Michael Snyder, Stanford d76aed51bcfcc3e0e8145183f5a81545 SRA:SRR14636376 https://www.encodeproject.org/files/ENCFF407YXO/@@download/ENCFF407YXO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/cfeae3e0-a3e2-49c8-8cc9-ab262ef61763/ENCFF407YXO.fastq.gz ENCFF235IFO fastq fastq reads ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 2 /files/ENCFF407YXO/ 3452512947 Michael Snyder, Stanford 1435865c656fd6e23385e5cfb709a175 SRA:SRR14636376 https://www.encodeproject.org/files/ENCFF235IFO/@@download/ENCFF235IFO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/35740ea5-cb01-4caf-96fd-2ab2d15fe495/ENCFF235IFO.fastq.gz ENCFF546CZS bam bam unfiltered alignments hg19 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF407YXO/, /files/ENCFF235IFO/, /files/ENCFF807MUK/ 6455664715 ENCODE Processing Pipeline e87583366bf8d2835119a652e20d89f2 https://www.encodeproject.org/files/ENCFF546CZS/@@download/ENCFF546CZS.bam released s3://encode-public/2017/01/08/4ff0e975-5696-44d9-97ff-d1c7804144ab/ENCFF546CZS.bam ENCODE3 hg19 archived ENCFF932ALA bam bam alignments hg19 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF407YXO/, /files/ENCFF235IFO/, /files/ENCFF807MUK/ 5266111772 ENCODE Processing Pipeline 90f632f63db648471ff244e5326d2939 https://www.encodeproject.org/files/ENCFF932ALA/@@download/ENCFF932ALA.bam released s3://encode-public/2017/01/08/d068e1c5-9086-43ac-ae3d-fdfac4321fec/ENCFF932ALA.bam ENCODE3 hg19 archived ENCFF270SFZ bam bam alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF407YXO/, /files/ENCFF235IFO/, /files/ENCFF643CGH/ 5273894495 ENCODE Processing Pipeline 2cd7a80643d279d92876d5a127d97fad https://www.encodeproject.org/files/ENCFF270SFZ/@@download/ENCFF270SFZ.bam released s3://encode-public/2017/01/08/e818dc77-2675-4594-ae44-94472898b3b5/ENCFF270SFZ.bam ENCODE3 GRCh38 archived ENCFF220BUY bam bam alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF426FHM/, /files/ENCFF643CGH/, /files/ENCFF273OIE/ 5370058320 ENCODE Processing Pipeline 58c3255a7130962b01371ea730bca692 https://www.encodeproject.org/files/ENCFF220BUY/@@download/ENCFF220BUY.bam released s3://encode-public/2017/01/08/846f800f-e9b3-4410-84b9-9e6f0ecc9525/ENCFF220BUY.bam ENCODE3 GRCh38 archived ENCFF351QQW bam bam unfiltered alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF407YXO/, /files/ENCFF235IFO/, /files/ENCFF643CGH/ 6467933531 ENCODE Processing Pipeline 2db11042f98d68f868d8b699347e60ca https://www.encodeproject.org/files/ENCFF351QQW/@@download/ENCFF351QQW.bam released s3://encode-public/2017/01/08/5d74e5cd-b571-4978-ba56-4ea369135482/ENCFF351QQW.bam ENCODE3 GRCh38 archived ENCFF521WIZ bam bam alignments hg19 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF426FHM/, /files/ENCFF807MUK/, /files/ENCFF273OIE/ 5360460826 ENCODE Processing Pipeline f5e138a03e95892f93844b8518d6ffde https://www.encodeproject.org/files/ENCFF521WIZ/@@download/ENCFF521WIZ.bam released s3://encode-public/2017/01/08/be403184-d422-4ffc-9ccb-a36e35634b75/ENCFF521WIZ.bam ENCODE3 hg19 archived ENCFF918GEC bam bam unfiltered alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF426FHM/, /files/ENCFF643CGH/, /files/ENCFF273OIE/ 6479853821 ENCODE Processing Pipeline 37086a4385779d8a59d69112bcea4b73 https://www.encodeproject.org/files/ENCFF918GEC/@@download/ENCFF918GEC.bam released s3://encode-public/2017/01/08/80dafca9-1784-411a-a729-5cc42b01c928/ENCFF918GEC.bam ENCODE3 GRCh38 archived ENCFF924TCH bam bam unfiltered alignments hg19 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF426FHM/, /files/ENCFF807MUK/, /files/ENCFF273OIE/ 6467582419 ENCODE Processing Pipeline 80971e903ac66d14627748fbd43ef271 https://www.encodeproject.org/files/ENCFF924TCH/@@download/ENCFF924TCH.bam released s3://encode-public/2017/01/08/cf91a473-547a-4094-9d39-f712c11f2263/ENCFF924TCH.bam ENCODE3 hg19 archived ENCFF359XAK bam bam unfiltered alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF273OIE/, /files/ENCFF110MCL/, /files/ENCFF426FHM/ 6559498454 ENCODE Processing Pipeline 287d8b681ba7cf7b35e381bd66be2ee8 https://www.encodeproject.org/files/ENCFF359XAK/@@download/ENCFF359XAK.bam released s3://encode-public/2020/09/29/b50eb327-c82d-453d-90fe-7980cc288f1b/ENCFF359XAK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF104IFO bam bam alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF273OIE/, /files/ENCFF110MCL/, /files/ENCFF426FHM/ 5358929667 ENCODE Processing Pipeline 553852443e9146462c042001b051ddc9 https://www.encodeproject.org/files/ENCFF104IFO/@@download/ENCFF104IFO.bam released s3://encode-public/2020/09/29/e4e60074-0ec2-426d-a384-a5cbef0e483c/ENCFF104IFO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF911QTY bam bam alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF235IFO/, /files/ENCFF407YXO/ 5268785665 ENCODE Processing Pipeline 14f49eaec15b10e4e5d3d5f9baabc937 https://www.encodeproject.org/files/ENCFF911QTY/@@download/ENCFF911QTY.bam released s3://encode-public/2020/09/29/08dbce7a-0bfc-40e4-a6a9-9d8d2b237747/ENCFF911QTY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF904BPM bam bam unfiltered alignments GRCh38 ENCSR528SMB Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF235IFO/, /files/ENCFF407YXO/ 6550151545 ENCODE Processing Pipeline 233b3b1c5ed8433bd2b93a73af8dddc3 https://www.encodeproject.org/files/ENCFF904BPM/@@download/ENCFF904BPM.bam released s3://encode-public/2020/09/29/0572bcb7-1af3-4c89-b5f0-1eceec9795b7/ENCFF904BPM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF047UFK fastq fastq reads ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF792LBY/ 2272579827 Michael Snyder, Stanford a6ec567e788813a256c63c1707bd7edb SRA:SRR6213859 https://www.encodeproject.org/files/ENCFF047UFK/@@download/ENCFF047UFK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/ffc67a3b-a701-494e-b4c7-50b846d94a8d/ENCFF047UFK.fastq.gz ENCFF792LBY fastq fastq reads ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF047UFK/ 2343257760 Michael Snyder, Stanford 0873e9b2fcd770c64487969cbf2d97d1 SRA:SRR6213859 https://www.encodeproject.org/files/ENCFF792LBY/@@download/ENCFF792LBY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/fcf52235-c5f5-453c-b0b7-42eeccd87ec1/ENCFF792LBY.fastq.gz ENCFF689KOV bam bam unfiltered alignments hg19 ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF047UFK/, /files/ENCFF807MUK/, /files/ENCFF792LBY/ 4727937839 ENCODE Processing Pipeline eb9b9f301ffcd70d76753f2b25b0f2d2 https://www.encodeproject.org/files/ENCFF689KOV/@@download/ENCFF689KOV.bam released s3://encode-public/2016/12/07/3a799aef-0368-44c7-b74a-2378ddaecb4e/ENCFF689KOV.bam ENCODE3 hg19 archived ENCFF537LWG bam bam unfiltered alignments GRCh38 ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF047UFK/, /files/ENCFF643CGH/, /files/ENCFF792LBY/ 4739559410 ENCODE Processing Pipeline aa3df657dec0bbb716a1cb7a11c53dfa https://www.encodeproject.org/files/ENCFF537LWG/@@download/ENCFF537LWG.bam released s3://encode-public/2016/12/07/5eda4a41-c01a-4402-9d46-bdb85e9be6ea/ENCFF537LWG.bam ENCODE3 GRCh38 archived ENCFF751PAR bam bam alignments hg19 ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF047UFK/, /files/ENCFF807MUK/, /files/ENCFF792LBY/ 3944786446 ENCODE Processing Pipeline 49259d094d58011ee3866cc4fc7d6e50 https://www.encodeproject.org/files/ENCFF751PAR/@@download/ENCFF751PAR.bam released s3://encode-public/2016/12/07/a7241669-83a4-4663-a4f4-278dcc9e1534/ENCFF751PAR.bam ENCODE3 hg19 archived ENCFF519AHQ bam bam alignments GRCh38 ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF047UFK/, /files/ENCFF643CGH/, /files/ENCFF792LBY/ 3951535076 ENCODE Processing Pipeline 3a72aea30422c94c08f272c278a6d0f9 https://www.encodeproject.org/files/ENCFF519AHQ/@@download/ENCFF519AHQ.bam released s3://encode-public/2016/12/07/8c74d393-031d-4503-a61c-c8d5fd90cdf4/ENCFF519AHQ.bam ENCODE3 GRCh38 archived ENCFF863OMK bam bam unfiltered alignments GRCh38 ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF047UFK/, /files/ENCFF792LBY/ 4725265520 ENCODE Processing Pipeline 3cad31fd565e0f11a652500f978e5bc6 https://www.encodeproject.org/files/ENCFF863OMK/@@download/ENCFF863OMK.bam released s3://encode-public/2020/06/02/d823d1c7-557a-4d49-8a9e-08a5f5231951/ENCFF863OMK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF455LAN bam bam alignments GRCh38 ENCSR492GDK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF047UFK/, /files/ENCFF792LBY/ 3887996154 ENCODE Processing Pipeline efb1d7e331f4483d75f80ab3e759768e https://www.encodeproject.org/files/ENCFF455LAN/@@download/ENCFF455LAN.bam released s3://encode-public/2020/06/02/a61663a3-5088-43f4-8afc-895a63bb0300/ENCFF455LAN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF764QLI fastq fastq reads ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF400DBC/ 2633060803 Michael Snyder, Stanford f725495b95e504f4816315e61ff6451a SRA:SRR6213157 https://www.encodeproject.org/files/ENCFF764QLI/@@download/ENCFF764QLI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/24/1b06df58-0744-4ee2-be07-6bd2162f8009/ENCFF764QLI.fastq.gz mild to moderate bottlenecking ENCFF400DBC fastq fastq reads ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF764QLI/ 2359097038 Michael Snyder, Stanford 82bc93b1232091527193804d8dda2014 SRA:SRR6213157 https://www.encodeproject.org/files/ENCFF400DBC/@@download/ENCFF400DBC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/24/3c35c5be-a588-4303-8f31-4f11284e0f24/ENCFF400DBC.fastq.gz mild to moderate bottlenecking ENCFF157RHA bam bam unfiltered alignments hg19 ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF400DBC/, /files/ENCFF807MUK/, /files/ENCFF764QLI/ 4806806390 ENCODE Processing Pipeline eb13de1534373ba2f222271227153728 https://www.encodeproject.org/files/ENCFF157RHA/@@download/ENCFF157RHA.bam released s3://encode-public/2016/10/27/1fba5a7f-b38a-4c70-8252-e156dac28d7e/ENCFF157RHA.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF106EBG bam bam alignments hg19 ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF400DBC/, /files/ENCFF807MUK/, /files/ENCFF764QLI/ 3993160965 ENCODE Processing Pipeline 8e30d7aabb70d302fb12bb50a53b1e1b https://www.encodeproject.org/files/ENCFF106EBG/@@download/ENCFF106EBG.bam released s3://encode-public/2016/10/27/8cd313dd-9c1a-42f5-98fe-c169d5fc0bd3/ENCFF106EBG.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF354FTJ bam bam unfiltered alignments GRCh38 ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF400DBC/, /files/ENCFF764QLI/, /files/ENCFF643CGH/ 4812996472 ENCODE Processing Pipeline 9d84b9d55f1f6cb6a4e2342cf36c3632 https://www.encodeproject.org/files/ENCFF354FTJ/@@download/ENCFF354FTJ.bam released s3://encode-public/2016/10/27/d76861f4-4fc3-4d6c-9718-546a40538180/ENCFF354FTJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF533JZM bam bam alignments GRCh38 ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF400DBC/, /files/ENCFF764QLI/, /files/ENCFF643CGH/ 3997805033 ENCODE Processing Pipeline fd4774bcb6016f174e37cc4bbe25d062 https://www.encodeproject.org/files/ENCFF533JZM/@@download/ENCFF533JZM.bam released s3://encode-public/2016/10/27/c0cbfd54-771b-4c0c-8da4-cc5107bf01b8/ENCFF533JZM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF403OLN bam bam unfiltered alignments GRCh38 ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF400DBC/, /files/ENCFF764QLI/ 4814816868 ENCODE Processing Pipeline 3937b6fe06ed2a746a5c194c2d1c50c2 https://www.encodeproject.org/files/ENCFF403OLN/@@download/ENCFF403OLN.bam released s3://encode-public/2020/06/03/aacc34b7-c326-4763-b081-8d67878aae9e/ENCFF403OLN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF105NPF bam bam alignments GRCh38 ENCSR326AHF Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF400DBC/, /files/ENCFF764QLI/ 3873097281 ENCODE Processing Pipeline 71e72bd605b4cf0ff3bac994c4a58bf5 https://www.encodeproject.org/files/ENCFF105NPF/@@download/ENCFF105NPF.bam released s3://encode-public/2020/06/03/dc0d4c06-1d0e-41f4-9e6f-6509a76b39e1/ENCFF105NPF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF990JJS fastq fastq reads ENCSR897QOF Control ChIP-seq /fly-donors/ENCDO157LDS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/59239/'], '@type': ['Target', 'Item'], 'name': 'CG18764-dmelanogaster', 'label': 'CG18764', '@id': '/targets/CG18764-dmelanogaster/', 'title': 'CG18764 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '696f22d3-b5d6-4cd8-b74d-8fd29649b72c', 'status': 'released'} dm3 3R 11614973 11637498 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1575308749 Kevin White, UChicago 3e74b4fa6de8d81a92b27913fa25ef04 https://www.encodeproject.org/files/ENCFF990JJS/@@download/ENCFF990JJS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/6968e94e-3f63-45bc-b5f6-637947c7077d/ENCFF990JJS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF252XEX bam bam alignments dm3 ENCSR897QOF Control ChIP-seq /fly-donors/ENCDO157LDS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/59239/'], '@type': ['Target', 'Item'], 'name': 'CG18764-dmelanogaster', 'label': 'CG18764', '@id': '/targets/CG18764-dmelanogaster/', 'title': 'CG18764 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '696f22d3-b5d6-4cd8-b74d-8fd29649b72c', 'status': 'released'} dm3 3R 11614973 11637498 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF990JJS/, /files/ENCFF059UHX/ 1905720659 Kevin White, UChicago cbaa97d8f9d49e165e0c8d0b77df74a8 https://www.encodeproject.org/files/ENCFF252XEX/@@download/ENCFF252XEX.bam released s3://encode-public/2016/08/04/b8899fa0-5574-4ba4-b1ec-6497644c41e7/ENCFF252XEX.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF942FZD bam bam alignments dm6 ENCSR897QOF Control ChIP-seq /fly-donors/ENCDO157LDS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/59239/'], '@type': ['Target', 'Item'], 'name': 'CG18764-dmelanogaster', 'label': 'CG18764', '@id': '/targets/CG18764-dmelanogaster/', 'title': 'CG18764 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '696f22d3-b5d6-4cd8-b74d-8fd29649b72c', 'status': 'released'} dm3 3R 11614973 11637498 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF990JJS/, /files/ENCFF479RCH/ 1898751763 Kevin White, UChicago 57367bdcb450a3ba1a2487632836bfeb https://www.encodeproject.org/files/ENCFF942FZD/@@download/ENCFF942FZD.bam released s3://encode-public/2016/08/04/fd782335-0506-4346-bea2-67804b7a540f/ENCFF942FZD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF610GPU bigWig bigWig signal of unique reads dm3 ENCSR897QOF Control ChIP-seq /fly-donors/ENCDO157LDS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/59239/'], '@type': ['Target', 'Item'], 'name': 'CG18764-dmelanogaster', 'label': 'CG18764', '@id': '/targets/CG18764-dmelanogaster/', 'title': 'CG18764 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '696f22d3-b5d6-4cd8-b74d-8fd29649b72c', 'status': 'released'} dm3 3R 11614973 11637498 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF252XEX/ 15569090 Kevin White, UChicago 35051f9a00ed4e477953346e752cc083 https://www.encodeproject.org/files/ENCFF610GPU/@@download/ENCFF610GPU.bigWig released s3://encode-public/2016/08/04/19ac5e79-15b1-495e-9a02-d657473c93ad/ENCFF610GPU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF674GZA bigWig bigWig read-depth normalized signal dm3 ENCSR897QOF Control ChIP-seq /fly-donors/ENCDO157LDS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/59239/'], '@type': ['Target', 'Item'], 'name': 'CG18764-dmelanogaster', 'label': 'CG18764', '@id': '/targets/CG18764-dmelanogaster/', 'title': 'CG18764 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '696f22d3-b5d6-4cd8-b74d-8fd29649b72c', 'status': 'released'} dm3 3R 11614973 11637498 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF252XEX/ 15497557 Kevin White, UChicago 6435d7758836c17ae18ae080cf6adf32 https://www.encodeproject.org/files/ENCFF674GZA/@@download/ENCFF674GZA.bigWig released s3://encode-public/2016/08/04/dec74315-98d9-42c5-896c-b8c677dc1960/ENCFF674GZA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF517TEQ bigWig bigWig signal of unique reads dm6 ENCSR897QOF Control ChIP-seq /fly-donors/ENCDO157LDS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/59239/'], '@type': ['Target', 'Item'], 'name': 'CG18764-dmelanogaster', 'label': 'CG18764', '@id': '/targets/CG18764-dmelanogaster/', 'title': 'CG18764 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '696f22d3-b5d6-4cd8-b74d-8fd29649b72c', 'status': 'released'} dm3 3R 11614973 11637498 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF942FZD/ 17659998 Kevin White, UChicago 0258f2f890e961a6b62c5f262387f0b0 https://www.encodeproject.org/files/ENCFF517TEQ/@@download/ENCFF517TEQ.bigWig released s3://encode-public/2016/08/04/91a55d34-6dfa-4c71-997d-c8c056cfb0a8/ENCFF517TEQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF082BCM bigWig bigWig read-depth normalized signal dm6 ENCSR897QOF Control ChIP-seq /fly-donors/ENCDO157LDS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/59239/'], '@type': ['Target', 'Item'], 'name': 'CG18764-dmelanogaster', 'label': 'CG18764', '@id': '/targets/CG18764-dmelanogaster/', 'title': 'CG18764 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '696f22d3-b5d6-4cd8-b74d-8fd29649b72c', 'status': 'released'} dm3 3R 11614973 11637498 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF942FZD/ 17559100 Kevin White, UChicago 9503b9586cceb6827d6c3fa2c70d4a62 https://www.encodeproject.org/files/ENCFF082BCM/@@download/ENCFF082BCM.bigWig released s3://encode-public/2016/08/04/ed296bc9-7edb-4576-9c95-eead7245b37e/ENCFF082BCM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF325XLQ fastq fastq reads ENCSR231AGR Control ChIP-seq /worm-donors/ENCDO785QVW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176052/'], '@type': ['Target', 'Item'], 'name': 'hmg-4-celegans', 'label': 'hmg-4', '@id': '/targets/hmg-4-celegans/', 'title': 'hmg-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4f214fa1-3561-48b3-b024-3f4044bcbba9', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 795487026 Kevin White, UChicago dad35a8e6fdaf7e7cb307c7a1ec38200 https://www.encodeproject.org/files/ENCFF325XLQ/@@download/ENCFF325XLQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/75acf63c-da58-48f3-a3ab-2dd505978326/ENCFF325XLQ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF594LEH bam bam alignments ce11 ENCSR231AGR Control ChIP-seq /worm-donors/ENCDO785QVW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176052/'], '@type': ['Target', 'Item'], 'name': 'hmg-4-celegans', 'label': 'hmg-4', '@id': '/targets/hmg-4-celegans/', 'title': 'hmg-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4f214fa1-3561-48b3-b024-3f4044bcbba9', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF325XLQ/, /files/ENCFF586MOL/ 1020874293 Kevin White, UChicago 2a595731b5090d8ef9a350a39616b56e https://www.encodeproject.org/files/ENCFF594LEH/@@download/ENCFF594LEH.bam released s3://encode-public/2018/09/17/376d2601-b4e0-42df-8e8c-9866d65a237b/ENCFF594LEH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF725LYI bigWig bigWig signal of unique reads ce11 ENCSR231AGR Control ChIP-seq /worm-donors/ENCDO785QVW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176052/'], '@type': ['Target', 'Item'], 'name': 'hmg-4-celegans', 'label': 'hmg-4', '@id': '/targets/hmg-4-celegans/', 'title': 'hmg-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4f214fa1-3561-48b3-b024-3f4044bcbba9', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF594LEH/ 9936096 Kevin White, UChicago 488c796b610b7f435ad0dd8bef8efc7a https://www.encodeproject.org/files/ENCFF725LYI/@@download/ENCFF725LYI.bigWig released s3://encode-public/2018/09/18/78de326e-dc65-4b4a-9d48-86291dc625e0/ENCFF725LYI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF096BYW bigWig bigWig read-depth normalized signal ce11 ENCSR231AGR Control ChIP-seq /worm-donors/ENCDO785QVW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176052/'], '@type': ['Target', 'Item'], 'name': 'hmg-4-celegans', 'label': 'hmg-4', '@id': '/targets/hmg-4-celegans/', 'title': 'hmg-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4f214fa1-3561-48b3-b024-3f4044bcbba9', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF594LEH/ 10000535 Kevin White, UChicago 508818ccf7f731123f6564570cb9a0d7 https://www.encodeproject.org/files/ENCFF096BYW/@@download/ENCFF096BYW.bigWig released s3://encode-public/2018/09/18/2d094ad4-8d5d-4a2f-bf6d-b352a3f03c16/ENCFF096BYW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF498QNP fastq fastq reads ENCSR825QUN Control ChIP-seq /fly-donors/ENCDO507ZAC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41040/'], '@type': ['Target', 'Item'], 'name': 'CG8159-dmelanogaster', 'label': 'CG8159', '@id': '/targets/CG8159-dmelanogaster/', 'title': 'CG8159 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5bf88bfc-9380-4ad6-9470-900b02f3999b', 'status': 'released'} dm3 3R 4544975 4565719 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 358296876 Kevin White, UChicago 6b1c5698dc4fa34fd618c863e614edd7 https://www.encodeproject.org/files/ENCFF498QNP/@@download/ENCFF498QNP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/052562f4-2666-4ea4-9846-321d29e136ff/ENCFF498QNP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF331VYG bam bam alignments dm6 ENCSR825QUN Control ChIP-seq /fly-donors/ENCDO507ZAC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41040/'], '@type': ['Target', 'Item'], 'name': 'CG8159-dmelanogaster', 'label': 'CG8159', '@id': '/targets/CG8159-dmelanogaster/', 'title': 'CG8159 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5bf88bfc-9380-4ad6-9470-900b02f3999b', 'status': 'released'} dm3 3R 4544975 4565719 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF498QNP/, /files/ENCFF479RCH/ 466388542 Kevin White, UChicago 69f8095bc869536026f5aa8b0079ee08 https://www.encodeproject.org/files/ENCFF331VYG/@@download/ENCFF331VYG.bam released s3://encode-public/2018/12/07/f764bdf2-6a12-42e1-98f9-5e556a862813/ENCFF331VYG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF862JAP bigWig bigWig read-depth normalized signal dm6 ENCSR825QUN Control ChIP-seq /fly-donors/ENCDO507ZAC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41040/'], '@type': ['Target', 'Item'], 'name': 'CG8159-dmelanogaster', 'label': 'CG8159', '@id': '/targets/CG8159-dmelanogaster/', 'title': 'CG8159 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5bf88bfc-9380-4ad6-9470-900b02f3999b', 'status': 'released'} dm3 3R 4544975 4565719 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF331VYG/ 17412638 Kevin White, UChicago 44871c5ac6f2f6637ff1df2adea1ed43 https://www.encodeproject.org/files/ENCFF862JAP/@@download/ENCFF862JAP.bigWig released s3://encode-public/2018/12/10/44c8d975-0474-4521-b24a-6b13869c56dc/ENCFF862JAP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF875BCN bigWig bigWig signal of unique reads dm6 ENCSR825QUN Control ChIP-seq /fly-donors/ENCDO507ZAC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41040/'], '@type': ['Target', 'Item'], 'name': 'CG8159-dmelanogaster', 'label': 'CG8159', '@id': '/targets/CG8159-dmelanogaster/', 'title': 'CG8159 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5bf88bfc-9380-4ad6-9470-900b02f3999b', 'status': 'released'} dm3 3R 4544975 4565719 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF331VYG/ 17427188 Kevin White, UChicago 4f5ac2e34911f94884c9be6e9f3bddbd https://www.encodeproject.org/files/ENCFF875BCN/@@download/ENCFF875BCN.bigWig released s3://encode-public/2018/12/10/eed6afaf-ee0c-4ee0-874c-1ebbe5fe5dbe/ENCFF875BCN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF327VAC fastq fastq reads ENCSR282UQU Control ChIP-seq /fly-donors/ENCDO624CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40021/'], '@type': ['Target', 'Item'], 'name': 'CG7271-dmelanogaster', 'label': 'CG7271', '@id': '/targets/CG7271-dmelanogaster/', 'title': 'CG7271 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b691ee5a-7358-4d12-9957-86e7111e526e', 'status': 'released'} dm3 3L 18571005 18594062 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 841088419 Kevin White, UChicago aef5bf400c19524a442148308f090e2d https://www.encodeproject.org/files/ENCFF327VAC/@@download/ENCFF327VAC.fastq.gz Illumina HiSeq 4000 /files/ENCFF210LEX/ released s3://encode-public/2018/09/18/c67cf7d3-98a8-403b-aa6d-dd4667f33118/ENCFF327VAC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF569ABX bam bam alignments dm6 ENCSR282UQU Control ChIP-seq /fly-donors/ENCDO624CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40021/'], '@type': ['Target', 'Item'], 'name': 'CG7271-dmelanogaster', 'label': 'CG7271', '@id': '/targets/CG7271-dmelanogaster/', 'title': 'CG7271 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b691ee5a-7358-4d12-9957-86e7111e526e', 'status': 'released'} dm3 3L 18571005 18594062 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF327VAC/, /files/ENCFF479RCH/ 1122412873 Kevin White, UChicago 9691497a4cba22e0f54d52fc098f9667 https://www.encodeproject.org/files/ENCFF569ABX/@@download/ENCFF569ABX.bam released s3://encode-public/2018/09/19/656ead62-d4ee-4556-89b5-a5f2d0a3b159/ENCFF569ABX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF264ONF bigWig bigWig signal of unique reads dm6 ENCSR282UQU Control ChIP-seq /fly-donors/ENCDO624CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40021/'], '@type': ['Target', 'Item'], 'name': 'CG7271-dmelanogaster', 'label': 'CG7271', '@id': '/targets/CG7271-dmelanogaster/', 'title': 'CG7271 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b691ee5a-7358-4d12-9957-86e7111e526e', 'status': 'released'} dm3 3L 18571005 18594062 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF569ABX/ 17620494 Kevin White, UChicago cb1cf4980c909065352db7a89ee2ce9a https://www.encodeproject.org/files/ENCFF264ONF/@@download/ENCFF264ONF.bigWig released s3://encode-public/2018/09/19/cae11aa1-fa14-4f83-90af-a1b094c00943/ENCFF264ONF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF249AAE bigWig bigWig read-depth normalized signal dm6 ENCSR282UQU Control ChIP-seq /fly-donors/ENCDO624CVF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40021/'], '@type': ['Target', 'Item'], 'name': 'CG7271-dmelanogaster', 'label': 'CG7271', '@id': '/targets/CG7271-dmelanogaster/', 'title': 'CG7271 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b691ee5a-7358-4d12-9957-86e7111e526e', 'status': 'released'} dm3 3L 18571005 18594062 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF569ABX/ 17613491 Kevin White, UChicago 7a9b35829469862bf3053fbf65197800 https://www.encodeproject.org/files/ENCFF249AAE/@@download/ENCFF249AAE.bigWig released s3://encode-public/2018/09/19/95aeb926-3884-48a5-998a-1b4b1ffa4529/ENCFF249AAE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF040ZOD fastq fastq reads ENCSR130OWB Control ChIP-seq /fly-donors/ENCDO932OJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38971/'], '@type': ['Target', 'Item'], 'name': 'CG6765-dmelanogaster', 'label': 'CG6765', '@id': '/targets/CG6765-dmelanogaster/', 'title': 'CG6765 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '56843e05-7d20-4fd3-9f65-fe562d24301e', 'status': 'released'} dm3 3L 8501764 8519889 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 677655701 Kevin White, UChicago e51696c96cae430c81224a32ae5217e1 https://www.encodeproject.org/files/ENCFF040ZOD/@@download/ENCFF040ZOD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/3d839064-9123-4480-9e2d-0e1efbfac70c/ENCFF040ZOD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF065XAN bam bam alignments dm3 ENCSR130OWB Control ChIP-seq /fly-donors/ENCDO932OJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38971/'], '@type': ['Target', 'Item'], 'name': 'CG6765-dmelanogaster', 'label': 'CG6765', '@id': '/targets/CG6765-dmelanogaster/', 'title': 'CG6765 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '56843e05-7d20-4fd3-9f65-fe562d24301e', 'status': 'released'} dm3 3L 8501764 8519889 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF040ZOD/, /files/ENCFF059UHX/ 918724132 Kevin White, UChicago 0a00cb1d4048c92b73a8592aa91f625e https://www.encodeproject.org/files/ENCFF065XAN/@@download/ENCFF065XAN.bam released s3://encode-public/2016/12/22/bbaf0281-a726-4ea4-8dc4-8e8341348ec8/ENCFF065XAN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF322WPR bam bam alignments dm6 ENCSR130OWB Control ChIP-seq /fly-donors/ENCDO932OJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38971/'], '@type': ['Target', 'Item'], 'name': 'CG6765-dmelanogaster', 'label': 'CG6765', '@id': '/targets/CG6765-dmelanogaster/', 'title': 'CG6765 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '56843e05-7d20-4fd3-9f65-fe562d24301e', 'status': 'released'} dm3 3L 8501764 8519889 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF040ZOD/, /files/ENCFF479RCH/ 901992811 Kevin White, UChicago 19946dcc4fecbb1c6e1e6a9745a12db0 https://www.encodeproject.org/files/ENCFF322WPR/@@download/ENCFF322WPR.bam released s3://encode-public/2016/12/22/59d61270-8e92-4ed8-a190-183f12b45708/ENCFF322WPR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF792JAN bigWig bigWig read-depth normalized signal dm3 ENCSR130OWB Control ChIP-seq /fly-donors/ENCDO932OJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38971/'], '@type': ['Target', 'Item'], 'name': 'CG6765-dmelanogaster', 'label': 'CG6765', '@id': '/targets/CG6765-dmelanogaster/', 'title': 'CG6765 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '56843e05-7d20-4fd3-9f65-fe562d24301e', 'status': 'released'} dm3 3L 8501764 8519889 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF065XAN/ 15279064 Kevin White, UChicago aeb01d67cd0711865c0b4779b5e877dd https://www.encodeproject.org/files/ENCFF792JAN/@@download/ENCFF792JAN.bigWig released s3://encode-public/2017/01/03/486d3f48-9369-4cc0-bd59-edb80d1fa68c/ENCFF792JAN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF883LVG bigWig bigWig signal of unique reads dm3 ENCSR130OWB Control ChIP-seq /fly-donors/ENCDO932OJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38971/'], '@type': ['Target', 'Item'], 'name': 'CG6765-dmelanogaster', 'label': 'CG6765', '@id': '/targets/CG6765-dmelanogaster/', 'title': 'CG6765 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '56843e05-7d20-4fd3-9f65-fe562d24301e', 'status': 'released'} dm3 3L 8501764 8519889 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF065XAN/ 15278284 Kevin White, UChicago 83d67f5a6c4dd6006e0bf61cef89a579 https://www.encodeproject.org/files/ENCFF883LVG/@@download/ENCFF883LVG.bigWig released s3://encode-public/2017/01/03/333b0cbd-5f96-45ef-b50b-e3304bedc23f/ENCFF883LVG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF456FLB bigWig bigWig read-depth normalized signal dm6 ENCSR130OWB Control ChIP-seq /fly-donors/ENCDO932OJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38971/'], '@type': ['Target', 'Item'], 'name': 'CG6765-dmelanogaster', 'label': 'CG6765', '@id': '/targets/CG6765-dmelanogaster/', 'title': 'CG6765 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '56843e05-7d20-4fd3-9f65-fe562d24301e', 'status': 'released'} dm3 3L 8501764 8519889 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF322WPR/ 17388896 Kevin White, UChicago afddb1d560b9acaaa51188de8fa91344 https://www.encodeproject.org/files/ENCFF456FLB/@@download/ENCFF456FLB.bigWig released s3://encode-public/2017/01/04/c3c00f89-c755-404a-a92b-1c11a8719ee6/ENCFF456FLB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF098QBQ bigWig bigWig signal of unique reads dm6 ENCSR130OWB Control ChIP-seq /fly-donors/ENCDO932OJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38971/'], '@type': ['Target', 'Item'], 'name': 'CG6765-dmelanogaster', 'label': 'CG6765', '@id': '/targets/CG6765-dmelanogaster/', 'title': 'CG6765 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '56843e05-7d20-4fd3-9f65-fe562d24301e', 'status': 'released'} dm3 3L 8501764 8519889 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF322WPR/ 17378877 Kevin White, UChicago 7a517378c3cd8ec9626610c0fcb8bb50 https://www.encodeproject.org/files/ENCFF098QBQ/@@download/ENCFF098QBQ.bigWig released s3://encode-public/2017/01/04/f349ab79-5f9d-48ce-b1c3-0f2d6b550aa1/ENCFF098QBQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF428PGV fastq fastq reads ENCSR557QUA Control ChIP-seq /worm-donors/ENCDO393GZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181337/'], '@type': ['Target', 'Item'], 'name': 'lin-14-celegans', 'label': 'lin-14', '@id': '/targets/lin-14-celegans/', 'title': 'lin-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '643b11cb-332f-41d5-b596-c52bd4c680fd', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 983633437 Kevin White, UChicago 287c0fdc9959a3a733684d86a6c1c646 https://www.encodeproject.org/files/ENCFF428PGV/@@download/ENCFF428PGV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/dcf483ce-e4a6-4051-bad2-fba6d5c89216/ENCFF428PGV.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF670DNN bam bam alignments ce11 ENCSR557QUA Control ChIP-seq /worm-donors/ENCDO393GZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181337/'], '@type': ['Target', 'Item'], 'name': 'lin-14-celegans', 'label': 'lin-14', '@id': '/targets/lin-14-celegans/', 'title': 'lin-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '643b11cb-332f-41d5-b596-c52bd4c680fd', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF428PGV/, /files/ENCFF586MOL/ 1279593842 Kevin White, UChicago 7554ba7d153b753e4aa6bcd86f14bc3d https://www.encodeproject.org/files/ENCFF670DNN/@@download/ENCFF670DNN.bam released s3://encode-public/2018/09/17/3b5520d1-7f2d-4806-89e4-4f8df13561b7/ENCFF670DNN.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF679VRL bigWig bigWig signal of unique reads ce11 ENCSR557QUA Control ChIP-seq /worm-donors/ENCDO393GZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181337/'], '@type': ['Target', 'Item'], 'name': 'lin-14-celegans', 'label': 'lin-14', '@id': '/targets/lin-14-celegans/', 'title': 'lin-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '643b11cb-332f-41d5-b596-c52bd4c680fd', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF670DNN/ 10052297 Kevin White, UChicago 31b1f6b6ca2db08fe44c6d4ec799d1f1 https://www.encodeproject.org/files/ENCFF679VRL/@@download/ENCFF679VRL.bigWig released s3://encode-public/2018/09/18/0bc98241-6d3f-49b6-9d5c-8c950589fdbc/ENCFF679VRL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF144CLV bigWig bigWig read-depth normalized signal ce11 ENCSR557QUA Control ChIP-seq /worm-donors/ENCDO393GZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181337/'], '@type': ['Target', 'Item'], 'name': 'lin-14-celegans', 'label': 'lin-14', '@id': '/targets/lin-14-celegans/', 'title': 'lin-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '643b11cb-332f-41d5-b596-c52bd4c680fd', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF670DNN/ 9980776 Kevin White, UChicago eabbc006152d873744a11163844f78df https://www.encodeproject.org/files/ENCFF144CLV/@@download/ENCFF144CLV.bigWig released s3://encode-public/2018/09/18/ac11e6fa-b605-40f5-ac24-36643debd2d9/ENCFF144CLV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF775TGL fastq fastq reads ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 single-ended 1141226264 Bradley Bernstein, Broad c1f12ada4f0a93287a77480f8b00d0d7 SRA:SRR5832841 https://www.encodeproject.org/files/ENCFF775TGL/@@download/ENCFF775TGL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/0e73020d-26ee-4e07-bbae-fbd5bb028282/ENCFF775TGL.fastq.gz ENCFF944VDZ fastq fastq reads ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 single-ended 1137442617 Bradley Bernstein, Broad 7253bc566de70f4eb4238e7bb80c3b94 SRA:SRR5832842 https://www.encodeproject.org/files/ENCFF944VDZ/@@download/ENCFF944VDZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/baba6546-9055-435e-b0a8-f6a13ec3b2d6/ENCFF944VDZ.fastq.gz ENCFF597LCE fastq fastq reads ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 single-ended 814308695 Bradley Bernstein, Broad fd36920d7b2cf87a293dc755932d105f SRA:SRR5832843 https://www.encodeproject.org/files/ENCFF597LCE/@@download/ENCFF597LCE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/0555faa0-03b3-4bc3-86e4-a8ab8af60620/ENCFF597LCE.fastq.gz ENCFF492ETH fastq fastq reads ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 single-ended 806275393 Bradley Bernstein, Broad 4e1d45093cfd2ee7b385f2bd78ba9dc6 SRA:SRR5832844 https://www.encodeproject.org/files/ENCFF492ETH/@@download/ENCFF492ETH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/1465cc3c-b155-47e3-a80e-b692afbc4ac0/ENCFF492ETH.fastq.gz ENCFF444CLV bam bam alignments hg19 ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF492ETH/, /files/ENCFF807MUK/, /files/ENCFF944VDZ/, /files/ENCFF597LCE/, /files/ENCFF775TGL/ 3110201168 ENCODE Processing Pipeline a59ac7775e072a0b507a720ca2171294 https://www.encodeproject.org/files/ENCFF444CLV/@@download/ENCFF444CLV.bam released s3://encode-public/2017/04/21/5eb2eb1a-5888-4d12-a83c-d23aa9db0c31/ENCFF444CLV.bam ENCODE3 hg19 archived ENCFF459QAM bam bam unfiltered alignments hg19 ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF492ETH/, /files/ENCFF807MUK/, /files/ENCFF944VDZ/, /files/ENCFF597LCE/, /files/ENCFF775TGL/ 3668268564 ENCODE Processing Pipeline ee78ae5cc0e08654d1b448019c75c5f3 https://www.encodeproject.org/files/ENCFF459QAM/@@download/ENCFF459QAM.bam released s3://encode-public/2017/04/21/828108de-afe5-4db6-95a8-85fc40c10fa8/ENCFF459QAM.bam ENCODE3 hg19 archived ENCFF886RGO bam bam unfiltered alignments GRCh38 ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF492ETH/, /files/ENCFF643CGH/, /files/ENCFF944VDZ/, /files/ENCFF597LCE/, /files/ENCFF775TGL/ 3678790917 ENCODE Processing Pipeline 679dc2c7b54f13a1b7df51c63940b7e2 https://www.encodeproject.org/files/ENCFF886RGO/@@download/ENCFF886RGO.bam released s3://encode-public/2017/04/21/863c53fc-4afc-450c-9f65-343153504e36/ENCFF886RGO.bam ENCODE3 GRCh38 archived ENCFF893ZJC bam bam alignments GRCh38 ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF492ETH/, /files/ENCFF643CGH/, /files/ENCFF944VDZ/, /files/ENCFF597LCE/, /files/ENCFF775TGL/ 3113667841 ENCODE Processing Pipeline 5c47abd298695abb7679211619da0fe6 https://www.encodeproject.org/files/ENCFF893ZJC/@@download/ENCFF893ZJC.bam released s3://encode-public/2017/04/21/7ec17290-58e2-4fb6-9e10-ff1658b51ce0/ENCFF893ZJC.bam ENCODE3 GRCh38 archived ENCFF450SQB bam bam alignments GRCh38 ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF492ETH/, /files/ENCFF775TGL/, /files/ENCFF110MCL/, /files/ENCFF944VDZ/, /files/ENCFF597LCE/ 3185872325 ENCODE Processing Pipeline d675ee68d1a65f0628ea1bb0aab70064 https://www.encodeproject.org/files/ENCFF450SQB/@@download/ENCFF450SQB.bam released s3://encode-public/2020/08/20/d2998c60-c26a-4584-99e9-09a7520f1dd4/ENCFF450SQB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF524AQA bam bam unfiltered alignments GRCh38 ENCSR494YJW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2017-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF492ETH/, /files/ENCFF775TGL/, /files/ENCFF110MCL/, /files/ENCFF944VDZ/, /files/ENCFF597LCE/ 3715440544 ENCODE Processing Pipeline 3af89d6cf619f39d8398b3e7a62a8c4e https://www.encodeproject.org/files/ENCFF524AQA/@@download/ENCFF524AQA.bam released s3://encode-public/2020/08/20/6ce76c5a-21e1-4b95-b1c2-9bab1c227f6e/ENCFF524AQA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF472XHX tagAlign tagAlign alignments hg19 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF140CWZ/ 226556778 Anshul Kundaje, Stanford 4a96a8ae427cb124d5a12e6642d02469 https://www.encodeproject.org/files/ENCFF472XHX/@@download/ENCFF472XHX.tagAlign.gz archived s3://encode-public/2016/03/30/3c29678d-3db6-45de-a673-82af356a92f7/ENCFF472XHX.tagAlign.gz Lab custom hg19 archived ENCFF140CWZ fastq fastq reads ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 2176012982 Zhiping Weng, UMass a297c6d9b870acb94e2a33581e42d6c3 SRA:SRR518305 https://www.encodeproject.org/files/ENCFF140CWZ/@@download/ENCFF140CWZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/db69c34b-7838-42f3-b5bd-a45f0afb9682/ENCFF140CWZ.fastq.gz ENCFF532QUW bam bam unfiltered alignments GRCh38 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF140CWZ/ 2104614328 ENCODE Processing Pipeline 2e403419fc602ea4a181d9092dfee0e9 https://www.encodeproject.org/files/ENCFF532QUW/@@download/ENCFF532QUW.bam released s3://encode-public/2017/04/15/a4d25fa3-a420-48c5-b55a-523f806f1de6/ENCFF532QUW.bam ENCODE3 GRCh38 archived ENCFF132IRT bam bam alignments hg19 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF140CWZ/ 1375135687 ENCODE Processing Pipeline 4d835df26ee9199035db700c8d9b5143 https://www.encodeproject.org/files/ENCFF132IRT/@@download/ENCFF132IRT.bam released s3://encode-public/2017/04/15/af239cd8-dd8e-4012-812c-3cac9cfc5657/ENCFF132IRT.bam ENCODE3 hg19 archived ENCFF939JRF bam bam unfiltered alignments hg19 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF140CWZ/ 2090758102 ENCODE Processing Pipeline 021a6bb2e8a89209bae328798081894d https://www.encodeproject.org/files/ENCFF939JRF/@@download/ENCFF939JRF.bam released s3://encode-public/2017/04/15/8b84cae8-34c0-40ab-bbb6-be02b4180bf7/ENCFF939JRF.bam ENCODE3 hg19 archived ENCFF063GWO bam bam alignments GRCh38 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF140CWZ/ 1374909992 ENCODE Processing Pipeline b8999dc53324fd047f715decea7a9908 https://www.encodeproject.org/files/ENCFF063GWO/@@download/ENCFF063GWO.bam released s3://encode-public/2017/04/15/323849f1-3036-44fd-bec2-468c56cfc67d/ENCFF063GWO.bam ENCODE3 GRCh38 archived ENCFF740OTM bam bam alignments GRCh38 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF140CWZ/ 1968061478 ENCODE Processing Pipeline 8092b47c5ea1a68c869b93ca035c9109 https://www.encodeproject.org/files/ENCFF740OTM/@@download/ENCFF740OTM.bam released s3://encode-public/2020/11/13/ab207487-ab65-407b-b3e8-e50909e67c46/ENCFF740OTM.bam ENCODE4 v1.6.1 GRCh38 released ENCFF570QPT bam bam unfiltered alignments GRCh38 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF140CWZ/ 2513332523 ENCODE Processing Pipeline 8ffc36cf5851d99f2363bcf8b6ca92f3 https://www.encodeproject.org/files/ENCFF570QPT/@@download/ENCFF570QPT.bam released s3://encode-public/2020/11/13/2261410b-74b6-48ab-a870-a1d015cc75a5/ENCFF570QPT.bam ENCODE4 v1.6.1 GRCh38 released ENCFF377RKP bam bam alignments GRCh38 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF140CWZ/, /files/ENCFF110MCL/ 1523994896 ENCODE Processing Pipeline cadfbfaad90afa690978c1f405c56edc https://www.encodeproject.org/files/ENCFF377RKP/@@download/ENCFF377RKP.bam released s3://encode-public/2020/12/10/f4cbe475-8780-4cfb-90b8-2a30d95a0f51/ENCFF377RKP.bam ENCODE4 v1.6.1 GRCh38 released ENCFF952LDG bam bam unfiltered alignments GRCh38 ENCSR064SPB Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF140CWZ/, /files/ENCFF110MCL/ 2040509454 ENCODE Processing Pipeline b671f4ecacb42b1b4b6b56578cc2d859 https://www.encodeproject.org/files/ENCFF952LDG/@@download/ENCFF952LDG.bam released s3://encode-public/2020/12/10/a30c4300-9458-4438-829c-0f5ed17f256f/ENCFF952LDG.bam ENCODE4 v1.6.1 GRCh38 released ENCFF370DYU fastq fastq reads ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF793FGU/ 3565677309 Michael Snyder, Stanford f5bf408af942b3405811e997a0441d12 SRA:SRR5112392 https://www.encodeproject.org/files/ENCFF370DYU/@@download/ENCFF370DYU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/64f467ef-3169-4e9f-90d2-a7272642f19c/ENCFF370DYU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF793FGU fastq fastq reads ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF370DYU/ 3628070856 Michael Snyder, Stanford d1efdbbf04e342c2d8a609257e80c83a SRA:SRR5112392 https://www.encodeproject.org/files/ENCFF793FGU/@@download/ENCFF793FGU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/195e8797-7c1d-4282-bf19-8d3425bd01fa/ENCFF793FGU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF633HYG bam bam unfiltered alignments GRCh38 ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF793FGU/, /files/ENCFF643CGH/, /files/ENCFF370DYU/ 7186894848 ENCODE Processing Pipeline fc0321cf3a6e0592f581f2c62437005a https://www.encodeproject.org/files/ENCFF633HYG/@@download/ENCFF633HYG.bam released s3://encode-public/2016/08/13/bfb91706-e3a3-40d3-932f-d3af67b12fdc/ENCFF633HYG.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF722UID bam bam alignments GRCh38 ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF793FGU/, /files/ENCFF643CGH/, /files/ENCFF370DYU/ 6088462852 ENCODE Processing Pipeline 731690528e4840804223ac5d8d87c6d7 https://www.encodeproject.org/files/ENCFF722UID/@@download/ENCFF722UID.bam released s3://encode-public/2016/08/13/a0849657-e206-41cd-a7af-5e93f6f73773/ENCFF722UID.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF222YPK bam bam unfiltered alignments hg19 ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF793FGU/, /files/ENCFF807MUK/, /files/ENCFF370DYU/ 7176738346 ENCODE Processing Pipeline 5cfb39e9cb03ae06d0614885842576ea https://www.encodeproject.org/files/ENCFF222YPK/@@download/ENCFF222YPK.bam released s3://encode-public/2016/09/11/e24ea6bb-7aeb-40e5-b40c-8aec46abb7dc/ENCFF222YPK.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF705CGL bam bam alignments hg19 ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF793FGU/, /files/ENCFF807MUK/, /files/ENCFF370DYU/ 6084827413 ENCODE Processing Pipeline f0d9832f7631a0e13aff29b83da7bb78 https://www.encodeproject.org/files/ENCFF705CGL/@@download/ENCFF705CGL.bam released s3://encode-public/2016/09/11/3a26916b-9375-4d07-9752-d12e3decc675/ENCFF705CGL.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF919EDN bam bam alignments GRCh38 ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF370DYU/, /files/ENCFF793FGU/ 6189823260 ENCODE Processing Pipeline fa2d4be42bba4235135a1df8cb17a308 https://www.encodeproject.org/files/ENCFF919EDN/@@download/ENCFF919EDN.bam released s3://encode-public/2020/06/02/e8f709c8-c268-4136-a3fc-4745ec7f3ba3/ENCFF919EDN.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF141JNA bam bam unfiltered alignments GRCh38 ENCSR398UVH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF370DYU/, /files/ENCFF793FGU/ 7275761459 ENCODE Processing Pipeline 65dccfc9b3acdd7bc85effbc97dab156 https://www.encodeproject.org/files/ENCFF141JNA/@@download/ENCFF141JNA.bam released s3://encode-public/2020/06/02/9bf3ccd7-9d35-4cc7-b58e-56e3cd77040a/ENCFF141JNA.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF426URQ fastq fastq reads ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 single-ended 1166565236 Xiang-Dong Fu, UCSD b8e460d129457dfe9e429f902f6b5985 SRA:SRR6214081 https://www.encodeproject.org/files/ENCFF426URQ/@@download/ENCFF426URQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/f2b3ae87-39c6-49ab-ba20-612b955d0589/ENCFF426URQ.fastq.gz low read length ENCFF101DEV fastq fastq reads ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 single-ended 1057504332 Xiang-Dong Fu, UCSD 3f886921e2bda83d35fe9dfed914c1cd SRA:SRR6214080 https://www.encodeproject.org/files/ENCFF101DEV/@@download/ENCFF101DEV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/f63bb249-1c45-4a47-a4a6-fe6b79b72408/ENCFF101DEV.fastq.gz low read length ENCFF644WGQ bam bam unfiltered alignments hg19 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF101DEV/, /files/ENCFF807MUK/ 1485293573 ENCODE Processing Pipeline 59422d7ccda1342f3395b1391c901583 https://www.encodeproject.org/files/ENCFF644WGQ/@@download/ENCFF644WGQ.bam released s3://encode-public/2017/02/08/73750b20-233b-471d-b606-cc61b6d259dd/ENCFF644WGQ.bam ENCODE3 hg19 archived low read length ENCFF526GBB bam bam unfiltered alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF101DEV/, /files/ENCFF643CGH/ 1491472334 ENCODE Processing Pipeline 060c885acbfc73665474a945212840d9 https://www.encodeproject.org/files/ENCFF526GBB/@@download/ENCFF526GBB.bam released s3://encode-public/2017/02/08/1caece85-d8cf-4bfd-8cf7-874ca1647493/ENCFF526GBB.bam ENCODE3 GRCh38 archived low read length ENCFF253UKR bam bam alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF101DEV/, /files/ENCFF643CGH/ 1091664804 ENCODE Processing Pipeline b4cb96b11b7baa10a16ae7a5b28e97db https://www.encodeproject.org/files/ENCFF253UKR/@@download/ENCFF253UKR.bam released s3://encode-public/2017/02/08/290cca26-a6e4-4403-ba75-15fd72cebaa2/ENCFF253UKR.bam ENCODE3 GRCh38 archived low read length ENCFF110QIK bam bam unfiltered alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF426URQ/ 1642781334 ENCODE Processing Pipeline 27464d8b02945dd30652e5539054c4e5 https://www.encodeproject.org/files/ENCFF110QIK/@@download/ENCFF110QIK.bam released s3://encode-public/2017/02/08/21d13bc0-8393-4d90-bc83-afa3a9402ba9/ENCFF110QIK.bam ENCODE3 GRCh38 archived low read length ENCFF970DLP bam bam unfiltered alignments hg19 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF426URQ/ 1635849829 ENCODE Processing Pipeline f5d245497ccac5f9f42d297709307663 https://www.encodeproject.org/files/ENCFF970DLP/@@download/ENCFF970DLP.bam released s3://encode-public/2017/02/08/b816b17e-e700-4cfc-95c0-37345050fbbf/ENCFF970DLP.bam ENCODE3 hg19 archived low read length ENCFF578XGS bam bam alignments hg19 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF426URQ/ 1202926052 ENCODE Processing Pipeline b06d3e1ade751a0abfa100729508ce74 https://www.encodeproject.org/files/ENCFF578XGS/@@download/ENCFF578XGS.bam released s3://encode-public/2017/02/08/fcf954af-9914-48b5-92fa-b1a535513a67/ENCFF578XGS.bam ENCODE3 hg19 archived low read length ENCFF375WCZ bam bam alignments hg19 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF101DEV/, /files/ENCFF807MUK/ 1092499725 ENCODE Processing Pipeline 555d0897c92cafe517dc9847306dcc75 https://www.encodeproject.org/files/ENCFF375WCZ/@@download/ENCFF375WCZ.bam released s3://encode-public/2017/02/08/7f200491-8afb-46ce-92d8-baac9b7b99a3/ENCFF375WCZ.bam ENCODE3 hg19 archived low read length ENCFF279QEN bam bam alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF426URQ/ 1202028446 ENCODE Processing Pipeline 530c30908599f3b198c7e6e5399a6b84 https://www.encodeproject.org/files/ENCFF279QEN/@@download/ENCFF279QEN.bam released s3://encode-public/2017/02/08/f525f194-8aa9-4e89-bb4c-be280a114557/ENCFF279QEN.bam ENCODE3 GRCh38 archived low read length ENCFF530LBO bam bam unfiltered alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF426URQ/, /files/ENCFF110MCL/ 1622496840 ENCODE Processing Pipeline 5f16c133fad5e21e88006703fdbf62db https://www.encodeproject.org/files/ENCFF530LBO/@@download/ENCFF530LBO.bam released s3://encode-public/2020/10/27/58d9e4d0-d475-4668-8078-7ed2cf6aec73/ENCFF530LBO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF234CES bam bam unfiltered alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF101DEV/ 1473090394 ENCODE Processing Pipeline d5fba11958f8c6a282db6f7ec64229cf https://www.encodeproject.org/files/ENCFF234CES/@@download/ENCFF234CES.bam released s3://encode-public/2020/10/27/83c528b7-4799-438c-934e-eb25ac427c57/ENCFF234CES.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF440KCS bam bam alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF101DEV/ 1122757241 ENCODE Processing Pipeline 5152b01aa3861028680057156e7d7c41 https://www.encodeproject.org/files/ENCFF440KCS/@@download/ENCFF440KCS.bam released s3://encode-public/2020/10/27/64187d09-0058-4f7a-ad8c-ab95910099ac/ENCFF440KCS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF705CKX bam bam alignments GRCh38 ENCSR735QJO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF426URQ/, /files/ENCFF110MCL/ 1236932877 ENCODE Processing Pipeline ce60d65c6d3af838215dc01cdd8d63e4 https://www.encodeproject.org/files/ENCFF705CKX/@@download/ENCFF705CKX.bam released s3://encode-public/2020/10/27/567be8cf-06aa-4cd7-98ff-33c4ae501bdf/ENCFF705CKX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF732BXU tagAlign tagAlign alignments hg19 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF835IOE/ 56796496 Anshul Kundaje, Stanford 231f182b89735dae51731294e686842a https://www.encodeproject.org/files/ENCFF732BXU/@@download/ENCFF732BXU.tagAlign.gz archived s3://encode-public/2016/05/02/9c097627-d388-4140-b9df-60168e027a3b/ENCFF732BXU.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF835IOE fastq fastq reads ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 461665977 Zhiping Weng, UMass 9fab731df524624a75c512e23dc9ee3f SRA:SRR067977 https://www.encodeproject.org/files/ENCFF835IOE/@@download/ENCFF835IOE.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/015fe916-4c00-47e8-bb70-a30a3175454a/ENCFF835IOE.fastq.gz mild to moderate bottlenecking, low read length insufficient read depth ENCFF956GEE bam bam alignments GRCh38 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF835IOE/, /files/ENCFF643CGH/ 263865325 ENCODE Processing Pipeline c6ea5f13bb9f90929b994a09c13e8faf https://www.encodeproject.org/files/ENCFF956GEE/@@download/ENCFF956GEE.bam released s3://encode-public/2016/12/19/7e558337-e38c-4855-a13d-af4a75c9699e/ENCFF956GEE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF438AXH bam bam unfiltered alignments GRCh38 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF835IOE/, /files/ENCFF643CGH/ 538198383 ENCODE Processing Pipeline 3d1c35840fe40a2bac34c2c35e7a87c5 https://www.encodeproject.org/files/ENCFF438AXH/@@download/ENCFF438AXH.bam released s3://encode-public/2016/12/19/714de157-5495-4703-b9de-a9a60c97c7ba/ENCFF438AXH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF573HST bam bam unfiltered alignments hg19 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF835IOE/, /files/ENCFF807MUK/ 536756384 ENCODE Processing Pipeline 37d395dae9272350d96f08893958b5f2 https://www.encodeproject.org/files/ENCFF573HST/@@download/ENCFF573HST.bam released s3://encode-public/2016/12/19/90609df3-2470-4adc-bc29-2d17b4a4c6fc/ENCFF573HST.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF142JLH bam bam alignments hg19 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF835IOE/, /files/ENCFF807MUK/ 264016111 ENCODE Processing Pipeline f20bd8921d9b4ca91d772cc4f765e98b https://www.encodeproject.org/files/ENCFF142JLH/@@download/ENCFF142JLH.bam released s3://encode-public/2016/12/19/4f185db6-a675-4b54-a722-174b0355682c/ENCFF142JLH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF528ZTQ bam bam alignments GRCh38 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF835IOE/ 284493264 ENCODE Processing Pipeline bc3fe0d6851d6d51450175d6ee4dd528 https://www.encodeproject.org/files/ENCFF528ZTQ/@@download/ENCFF528ZTQ.bam released s3://encode-public/2020/11/13/42247cb8-90ca-4e76-a4f5-b335cf5ea48a/ENCFF528ZTQ.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF993NSJ bam bam unfiltered alignments GRCh38 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF835IOE/ 529684293 ENCODE Processing Pipeline d8bd7ccac4b15834dff3c4e237bab4db https://www.encodeproject.org/files/ENCFF993NSJ/@@download/ENCFF993NSJ.bam released s3://encode-public/2020/11/13/d5fcbfb8-f9be-4170-890d-5b272a803e3d/ENCFF993NSJ.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF243VEF bam bam unfiltered alignments GRCh38 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF835IOE/, /files/ENCFF110MCL/ 459002052 ENCODE Processing Pipeline 2054fb883a2c24e15f073ed8e0709e26 https://www.encodeproject.org/files/ENCFF243VEF/@@download/ENCFF243VEF.bam released s3://encode-public/2020/12/09/48669c1b-efb8-4f5e-a282-69039c42a1ab/ENCFF243VEF.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF784JZF bam bam alignments GRCh38 ENCSR814EAU Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF835IOE/, /files/ENCFF110MCL/ 240120579 ENCODE Processing Pipeline 87f0211e7093872baca8cc8ac406b6aa https://www.encodeproject.org/files/ENCFF784JZF/@@download/ENCFF784JZF.bam released s3://encode-public/2020/12/09/52faaed2-d6b7-4ff8-bf50-e777160494fd/ENCFF784JZF.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF722PTT fastq fastq reads ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF160JLB/ 2631386015 Michael Snyder, Stanford 7e39ec98b00ade8124246e9fe3bfcc6f SRA:SRR6213987 https://www.encodeproject.org/files/ENCFF722PTT/@@download/ENCFF722PTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/25/8f3cdfbc-6cc3-4cfe-9956-541de9d124e1/ENCFF722PTT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF160JLB fastq fastq reads ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF722PTT/ 2955281252 Michael Snyder, Stanford fb5bfb65b64c134222c91fd58c2d5b40 SRA:SRR6213987 https://www.encodeproject.org/files/ENCFF160JLB/@@download/ENCFF160JLB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/25/c19f02e4-cfbc-4af9-aeb9-f841567231aa/ENCFF160JLB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF894ZWD bam bam alignments GRCh38 ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF722PTT/, /files/ENCFF643CGH/, /files/ENCFF160JLB/ 3769104285 ENCODE Processing Pipeline 8f1cf23f6a8eaffe72c6b779a9618ad3 https://www.encodeproject.org/files/ENCFF894ZWD/@@download/ENCFF894ZWD.bam released s3://encode-public/2017/01/27/3a1d7c5a-cae8-4c99-bbd3-de1725be0166/ENCFF894ZWD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF276DOD bam bam unfiltered alignments GRCh38 ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF722PTT/, /files/ENCFF643CGH/, /files/ENCFF160JLB/ 5051118167 ENCODE Processing Pipeline 6973a29826bf9b2eaa89e575b85207b3 https://www.encodeproject.org/files/ENCFF276DOD/@@download/ENCFF276DOD.bam released s3://encode-public/2017/01/27/c901e2fe-3c7c-4cde-83c6-4754556c1d11/ENCFF276DOD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF321OFK bam bam unfiltered alignments hg19 ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF722PTT/, /files/ENCFF807MUK/, /files/ENCFF160JLB/ 5046667114 ENCODE Processing Pipeline 2a17e3dfce5a98d7808b986f9b64af20 https://www.encodeproject.org/files/ENCFF321OFK/@@download/ENCFF321OFK.bam released s3://encode-public/2017/01/28/d5229a03-39c9-4022-8c1c-4fbf6ce9b6a7/ENCFF321OFK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF112QNF bam bam alignments hg19 ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF722PTT/, /files/ENCFF807MUK/, /files/ENCFF160JLB/ 3763084536 ENCODE Processing Pipeline 38183e95a2498ae6050d066db756cab6 https://www.encodeproject.org/files/ENCFF112QNF/@@download/ENCFF112QNF.bam released s3://encode-public/2017/01/28/01ab8f6d-d5dd-4296-a1ff-6ee43a7fa462/ENCFF112QNF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF869XWZ bam bam unfiltered alignments GRCh38 ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF722PTT/, /files/ENCFF160JLB/ 5077949209 ENCODE Processing Pipeline d94f927eb4de4ecec6180dbff0b94c20 https://www.encodeproject.org/files/ENCFF869XWZ/@@download/ENCFF869XWZ.bam released s3://encode-public/2020/06/02/71828935-c9c4-4fec-9cb6-45c62bf3d70d/ENCFF869XWZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF558OZB bam bam alignments GRCh38 ENCSR921JFJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF722PTT/, /files/ENCFF160JLB/ 3667251119 ENCODE Processing Pipeline 08e1e5217f074038f565c033052e3661 https://www.encodeproject.org/files/ENCFF558OZB/@@download/ENCFF558OZB.bam released s3://encode-public/2020/06/02/a9966620-c916-47c3-9619-510b27a46845/ENCFF558OZB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF943LBA fastq fastq reads ENCSR115CIR Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF126CES/ 3158445957 Michael Snyder, Stanford 291989b92bc3989e25819bb8ff7f284b SRA:SRR14104409 https://www.encodeproject.org/files/ENCFF943LBA/@@download/ENCFF943LBA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/61eeac9d-b226-4e8a-9f89-145fa8a9fd21/ENCFF943LBA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF126CES fastq fastq reads ENCSR115CIR Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF943LBA/ 3434503187 Michael Snyder, Stanford 061535d8de3ccd816cd6d602ce0c5208 SRA:SRR14104409 https://www.encodeproject.org/files/ENCFF126CES/@@download/ENCFF126CES.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/9c31ec20-33a3-4f14-b223-0ab8fa9f8fa0/ENCFF126CES.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF953JUT bam bam alignments GRCh38 ENCSR115CIR Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF943LBA/, /files/ENCFF126CES/ 3668482064 ENCODE Processing Pipeline a65da423f3885ce9b410ac30d5dfc799 https://www.encodeproject.org/files/ENCFF953JUT/@@download/ENCFF953JUT.bam released s3://encode-public/2020/04/21/e79ee88c-b84d-4841-9f49-2a77094139ff/ENCFF953JUT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF566FYV bam bam unfiltered alignments GRCh38 ENCSR115CIR Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF943LBA/, /files/ENCFF126CES/ 5685474683 ENCODE Processing Pipeline 736ccf58a9ff99b3581af5c7a23b6996 https://www.encodeproject.org/files/ENCFF566FYV/@@download/ENCFF566FYV.bam released s3://encode-public/2020/04/21/aec8dbec-fe07-40a2-aeba-828cd80ef513/ENCFF566FYV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF330BHV fastq fastq reads ENCSR315IPI Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 375182655 Kevin White, UChicago 1f671c1527f0a4be9578dfd68bccd1b8 https://www.encodeproject.org/files/ENCFF330BHV/@@download/ENCFF330BHV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/6dd496ec-69dd-4ed6-b77c-57e286e014c1/ENCFF330BHV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF809YSN bam bam alignments dm3 ENCSR315IPI Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF330BHV/, /files/ENCFF059UHX/ 437765727 Kevin White, UChicago eef88c96e95cfae4b074dccb3f7f0deb https://www.encodeproject.org/files/ENCFF809YSN/@@download/ENCFF809YSN.bam released s3://encode-public/2016/08/03/f90aa2fa-9ae2-4796-a570-232e64b227e6/ENCFF809YSN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF390VOX bigWig bigWig signal of unique reads dm3 ENCSR315IPI Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF809YSN/ 15048953 Kevin White, UChicago 46a7bf69344482274b2663592b347b4b https://www.encodeproject.org/files/ENCFF390VOX/@@download/ENCFF390VOX.bigWig released s3://encode-public/2016/08/04/e8bebc02-38f0-4ef2-800b-322adc2d811e/ENCFF390VOX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF938LPF bigWig bigWig read-depth normalized signal dm3 ENCSR315IPI Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF809YSN/ 15019018 Kevin White, UChicago ffa358ec1cea21306add289219a34980 https://www.encodeproject.org/files/ENCFF938LPF/@@download/ENCFF938LPF.bigWig released s3://encode-public/2016/08/04/a4a9813e-c19d-4a19-b7ca-4eeb199fff5a/ENCFF938LPF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF812ABA bam bam alignments dm6 ENCSR315IPI Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF330BHV/, /files/ENCFF479RCH/ 436376600 Kevin White, UChicago d2a83fc36573c3c275dcac85e05bcaa6 https://www.encodeproject.org/files/ENCFF812ABA/@@download/ENCFF812ABA.bam released s3://encode-public/2016/08/05/c1086bfc-03d1-4161-af40-3d406311897f/ENCFF812ABA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF390LEZ bigWig bigWig signal of unique reads dm6 ENCSR315IPI Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF812ABA/ 17112142 Kevin White, UChicago e588e45d77c08a490a4e46a3d55afd67 https://www.encodeproject.org/files/ENCFF390LEZ/@@download/ENCFF390LEZ.bigWig released s3://encode-public/2016/08/05/83442be1-8eef-41d9-b834-596d7779c603/ENCFF390LEZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF979NMV bigWig bigWig read-depth normalized signal dm6 ENCSR315IPI Control ChIP-seq /fly-donors/ENCDO664OUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34568/'], '@type': ['Target', 'Item'], 'name': 'salr-dmelanogaster', 'label': 'salr', '@id': '/targets/salr-dmelanogaster/', 'title': 'salr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '786e4226-9a91-4303-ab08-0a6287848f9c', 'status': 'released'} dm3 2L 11330473 11435761 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF812ABA/ 17085370 Kevin White, UChicago f3aa2eabaae38a6a1ed619fb17810066 https://www.encodeproject.org/files/ENCFF979NMV/@@download/ENCFF979NMV.bigWig released s3://encode-public/2016/08/05/c2adf501-84d3-4eae-9390-bc7270600d45/ENCFF979NMV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF393XIZ fastq fastq reads ENCSR612BYM Control ChIP-seq /fly-donors/ENCDO177SSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44811/'], '@type': ['Target', 'Item'], 'name': 'E(bx)-dmelanogaster', 'label': 'E(bx)', '@id': '/targets/E(bx)-dmelanogaster/', 'title': 'E(bx) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '1a625dbe-592e-4597-869f-92e7a26d1a90', 'status': 'released'} dm3 3L 230014 250819 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1147999616 Kevin White, UChicago 8f29f57ff2a3e1beaf713c46e38edb0e https://www.encodeproject.org/files/ENCFF393XIZ/@@download/ENCFF393XIZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/02/5b36eea7-14bf-4ada-9fe2-14c48eff6fb1/ENCFF393XIZ.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF152ZSD bam bam alignments dm3 ENCSR612BYM Control ChIP-seq /fly-donors/ENCDO177SSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44811/'], '@type': ['Target', 'Item'], 'name': 'E(bx)-dmelanogaster', 'label': 'E(bx)', '@id': '/targets/E(bx)-dmelanogaster/', 'title': 'E(bx) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '1a625dbe-592e-4597-869f-92e7a26d1a90', 'status': 'released'} dm3 3L 230014 250819 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF393XIZ/, /files/ENCFF059UHX/ 1382874567 Kevin White, UChicago 0120cb96fe74d806314eb100f3eed8f9 https://www.encodeproject.org/files/ENCFF152ZSD/@@download/ENCFF152ZSD.bam released s3://encode-public/2016/08/02/03190731-2c6f-47fb-bdc0-5e7de6239e6c/ENCFF152ZSD.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF600QIV bam bam alignments dm6 ENCSR612BYM Control ChIP-seq /fly-donors/ENCDO177SSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44811/'], '@type': ['Target', 'Item'], 'name': 'E(bx)-dmelanogaster', 'label': 'E(bx)', '@id': '/targets/E(bx)-dmelanogaster/', 'title': 'E(bx) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '1a625dbe-592e-4597-869f-92e7a26d1a90', 'status': 'released'} dm3 3L 230014 250819 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF393XIZ/, /files/ENCFF479RCH/ 1374327760 Kevin White, UChicago b0cb475d128df00a7042606118ce5ba8 https://www.encodeproject.org/files/ENCFF600QIV/@@download/ENCFF600QIV.bam released s3://encode-public/2016/08/04/2c8dadac-8a4d-40f9-9e53-d287273a6162/ENCFF600QIV.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF513ARY bigWig bigWig signal of unique reads dm3 ENCSR612BYM Control ChIP-seq /fly-donors/ENCDO177SSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44811/'], '@type': ['Target', 'Item'], 'name': 'E(bx)-dmelanogaster', 'label': 'E(bx)', '@id': '/targets/E(bx)-dmelanogaster/', 'title': 'E(bx) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '1a625dbe-592e-4597-869f-92e7a26d1a90', 'status': 'released'} dm3 3L 230014 250819 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF152ZSD/ 15460252 Kevin White, UChicago 9ea2740915cb990bbd93b0d99ba50b2f https://www.encodeproject.org/files/ENCFF513ARY/@@download/ENCFF513ARY.bigWig released s3://encode-public/2016/08/04/09d92c35-8585-452c-a52d-a11c2ea33d5b/ENCFF513ARY.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF890IVX bigWig bigWig read-depth normalized signal dm3 ENCSR612BYM Control ChIP-seq /fly-donors/ENCDO177SSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44811/'], '@type': ['Target', 'Item'], 'name': 'E(bx)-dmelanogaster', 'label': 'E(bx)', '@id': '/targets/E(bx)-dmelanogaster/', 'title': 'E(bx) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '1a625dbe-592e-4597-869f-92e7a26d1a90', 'status': 'released'} dm3 3L 230014 250819 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF152ZSD/ 15497623 Kevin White, UChicago a8abcb1dfbb4db97ab44966c595833b0 https://www.encodeproject.org/files/ENCFF890IVX/@@download/ENCFF890IVX.bigWig released s3://encode-public/2016/08/04/a478288a-53e7-4973-900d-a2d87ab63f30/ENCFF890IVX.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF514NIN bigWig bigWig signal of unique reads dm6 ENCSR612BYM Control ChIP-seq /fly-donors/ENCDO177SSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44811/'], '@type': ['Target', 'Item'], 'name': 'E(bx)-dmelanogaster', 'label': 'E(bx)', '@id': '/targets/E(bx)-dmelanogaster/', 'title': 'E(bx) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '1a625dbe-592e-4597-869f-92e7a26d1a90', 'status': 'released'} dm3 3L 230014 250819 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF600QIV/ 17495341 Kevin White, UChicago 305a109316b5333a0487ffa12097c6b7 https://www.encodeproject.org/files/ENCFF514NIN/@@download/ENCFF514NIN.bigWig released s3://encode-public/2016/08/04/afea7e98-e115-4211-8413-c004bc1c50bb/ENCFF514NIN.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF841JSR bigWig bigWig read-depth normalized signal dm6 ENCSR612BYM Control ChIP-seq /fly-donors/ENCDO177SSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44811/'], '@type': ['Target', 'Item'], 'name': 'E(bx)-dmelanogaster', 'label': 'E(bx)', '@id': '/targets/E(bx)-dmelanogaster/', 'title': 'E(bx) (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '1a625dbe-592e-4597-869f-92e7a26d1a90', 'status': 'released'} dm3 3L 230014 250819 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF600QIV/ 17566285 Kevin White, UChicago 90c0efc0f8ecfe621b1d0df1a79ffe8f https://www.encodeproject.org/files/ENCFF841JSR/@@download/ENCFF841JSR.bigWig released s3://encode-public/2016/08/04/7c48f1f9-77b0-4d81-9ca4-4732e11d9ae8/ENCFF841JSR.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF346PQM fastq fastq reads ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 159983084 Kevin White, UChicago d85ac398f8a95ee3613402e49617901e https://www.encodeproject.org/files/ENCFF346PQM/@@download/ENCFF346PQM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/87c2031c-6763-4f0b-b0ee-8b4cd1789f98/ENCFF346PQM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF523OGH fastq fastq reads ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 349552965 Kevin White, UChicago c0e3662a9d5f6392c31c38dfeb6e740b https://www.encodeproject.org/files/ENCFF523OGH/@@download/ENCFF523OGH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/2fcbeae2-60d8-426f-b2e3-1046db66e330/ENCFF523OGH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF388YDC bam bam alignments dm3 ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 47 /files/ENCFF059UHX/, /files/ENCFF346PQM/, /files/ENCFF523OGH/ 193205215 Kevin White, UChicago 0d1ceccdda7c8436fc83dd839cd99940 https://www.encodeproject.org/files/ENCFF388YDC/@@download/ENCFF388YDC.bam released s3://encode-public/2016/04/11/95b24057-52ab-4380-ae34-68b292e76de6/ENCFF388YDC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF275STH bam bam alignments dm6 ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF346PQM/, /files/ENCFF523OGH/ 621191869 Kevin White, UChicago c6b06ce3c2ce6d73d320dd7901456f1c https://www.encodeproject.org/files/ENCFF275STH/@@download/ENCFF275STH.bam released s3://encode-public/2016/04/20/cddb0c5e-5e62-486f-9e3e-a2a1f3dc2550/ENCFF275STH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF571PFY bigWig bigWig signal of unique reads dm6 ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF275STH/ 17324948 Kevin White, UChicago 7e320b647b0c0f6a835be64e223c2f4d https://www.encodeproject.org/files/ENCFF571PFY/@@download/ENCFF571PFY.bigWig released s3://encode-public/2016/06/21/44ebbd29-2d96-474e-8e9d-0c08e803bc17/ENCFF571PFY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF425RBY bigWig bigWig signal of unique reads dm3 ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF388YDC/ 14945561 Kevin White, UChicago 942d2b416466dcba53090b590c43d39e https://www.encodeproject.org/files/ENCFF425RBY/@@download/ENCFF425RBY.bigWig released s3://encode-public/2016/06/21/87e464a3-ea18-4d36-88c3-b2e52cee98c6/ENCFF425RBY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF989VHG bigWig bigWig read-depth normalized signal dm6 ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF275STH/ 17365449 Kevin White, UChicago 37192ea45ed0d338cdebb2b2cc9b586d https://www.encodeproject.org/files/ENCFF989VHG/@@download/ENCFF989VHG.bigWig released s3://encode-public/2016/06/21/71b1d390-07e0-46c3-9fbe-3f82cbf3fdfc/ENCFF989VHG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF236UJF bigWig bigWig read-depth normalized signal dm3 ENCSR893TGG Control ChIP-seq /fly-donors/ENCDO598QOH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43070/'], '@type': ['Target', 'Item'], 'name': 'CG11902-dmelanogaster', 'label': 'CG11902', '@id': '/targets/CG11902-dmelanogaster/', 'title': 'CG11902 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddd64186-1fed-4464-9b26-7847fce7120d', 'status': 'released'} dm3 3R 21156515 21176930 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF388YDC/ 14971926 Kevin White, UChicago 76aa8b8ad94fff0949f2d3a8f1df05de https://www.encodeproject.org/files/ENCFF236UJF/@@download/ENCFF236UJF.bigWig released s3://encode-public/2016/06/21/8f26370b-a099-43bc-9c58-692d23f52085/ENCFF236UJF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF673LIB fastq fastq reads ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF488PCP/ 2873962108 Michael Snyder, Stanford 06b5d70b34deb3da207739e4360f800b SRA:SRR6212846 https://www.encodeproject.org/files/ENCFF673LIB/@@download/ENCFF673LIB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/7e44fe2a-c860-4a83-9882-4534b4693ed0/ENCFF673LIB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF488PCP fastq fastq reads ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF673LIB/ 3300764004 Michael Snyder, Stanford 9f2ea4746bb30c2691fa764a2f8d1f8d SRA:SRR6212846 https://www.encodeproject.org/files/ENCFF488PCP/@@download/ENCFF488PCP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/014cd4f5-25bd-4018-85ff-0176b96f2e88/ENCFF488PCP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF491QQW bam bam unfiltered alignments hg19 ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF488PCP/, /files/ENCFF807MUK/, /files/ENCFF673LIB/ 5738250366 ENCODE Processing Pipeline eba9a84934e56d677b3b8bad0f138756 https://www.encodeproject.org/files/ENCFF491QQW/@@download/ENCFF491QQW.bam released s3://encode-public/2016/12/10/4cfbaa64-14fa-4ef7-8432-621523b8543a/ENCFF491QQW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF764UTK bam bam alignments hg19 ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF488PCP/, /files/ENCFF807MUK/, /files/ENCFF673LIB/ 4238989546 ENCODE Processing Pipeline 5fa50c9a98c52f45db1594623daac4e7 https://www.encodeproject.org/files/ENCFF764UTK/@@download/ENCFF764UTK.bam released s3://encode-public/2016/12/10/d4444cea-10d8-4521-9723-738d2f12e9f2/ENCFF764UTK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF747SQK bam bam unfiltered alignments GRCh38 ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF488PCP/, /files/ENCFF643CGH/, /files/ENCFF673LIB/ 5747053687 ENCODE Processing Pipeline 62624923fc2725dd9e608bf810857623 https://www.encodeproject.org/files/ENCFF747SQK/@@download/ENCFF747SQK.bam released s3://encode-public/2016/12/10/003803b6-f0fd-4065-8b58-e503f597251d/ENCFF747SQK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF295YCD bam bam alignments GRCh38 ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF488PCP/, /files/ENCFF643CGH/, /files/ENCFF673LIB/ 4247162160 ENCODE Processing Pipeline 8ac34df307362e37b23687cfb1614ab6 https://www.encodeproject.org/files/ENCFF295YCD/@@download/ENCFF295YCD.bam released s3://encode-public/2016/12/10/d374626e-39ef-4302-8c3e-1f3a112fbed1/ENCFF295YCD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF140FJM bam bam alignments GRCh38 ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF673LIB/, /files/ENCFF488PCP/ 4155433111 ENCODE Processing Pipeline 19805041b9b5b1fef7f223cc08d2c682 https://www.encodeproject.org/files/ENCFF140FJM/@@download/ENCFF140FJM.bam released s3://encode-public/2020/06/03/0ae4094a-3a71-4212-9327-6843154fc3a7/ENCFF140FJM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF982RKY bam bam unfiltered alignments GRCh38 ENCSR153OQA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF673LIB/, /files/ENCFF488PCP/ 5751357147 ENCODE Processing Pipeline df9010403d62deca6dd18d06c783b9bf https://www.encodeproject.org/files/ENCFF982RKY/@@download/ENCFF982RKY.bam released s3://encode-public/2020/06/03/6e919549-0662-44d7-b3ac-a9eea6187f8d/ENCFF982RKY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF624TVL fastq fastq reads ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF974YEI/ 2988254142 Michael Snyder, Stanford 2e410019e0a57ef19a05afaae48369b2 SRA:SRR6213576 https://www.encodeproject.org/files/ENCFF624TVL/@@download/ENCFF624TVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/a465a7dd-594f-41d1-a65a-07d0b0a618f7/ENCFF624TVL.fastq.gz mild to moderate bottlenecking ENCFF974YEI fastq fastq reads ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF624TVL/ 3424606815 Michael Snyder, Stanford 4f1bb136d6335441571baa35e4dba293 SRA:SRR6213576 https://www.encodeproject.org/files/ENCFF974YEI/@@download/ENCFF974YEI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/6857e4a0-61a9-4fb5-bfce-70ace3b7233f/ENCFF974YEI.fastq.gz mild to moderate bottlenecking ENCFF312KPJ bam bam unfiltered alignments hg19 ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF624TVL/, /files/ENCFF807MUK/, /files/ENCFF974YEI/ 6079999679 ENCODE Processing Pipeline 5ed17d5ec81ebb8751d5eee4a7b1783f https://www.encodeproject.org/files/ENCFF312KPJ/@@download/ENCFF312KPJ.bam released s3://encode-public/2016/12/10/8fb20cf1-ebf4-4532-8068-55535c1542f7/ENCFF312KPJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF716USG bam bam alignments hg19 ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF624TVL/, /files/ENCFF807MUK/, /files/ENCFF974YEI/ 4884565619 ENCODE Processing Pipeline 516778e86948957af515e6ab51b4e825 https://www.encodeproject.org/files/ENCFF716USG/@@download/ENCFF716USG.bam released s3://encode-public/2016/12/10/a010cf14-b43e-492e-ac8c-30d2488fcefe/ENCFF716USG.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF518KFT bam bam unfiltered alignments GRCh38 ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF624TVL/, /files/ENCFF643CGH/, /files/ENCFF974YEI/ 6089872423 ENCODE Processing Pipeline 75d30ac0acac9fdd8e043341965868d8 https://www.encodeproject.org/files/ENCFF518KFT/@@download/ENCFF518KFT.bam released s3://encode-public/2016/12/10/c16f7a6f-8abe-4a6c-97b5-69753761417a/ENCFF518KFT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF719VPI bam bam alignments GRCh38 ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF624TVL/, /files/ENCFF643CGH/, /files/ENCFF974YEI/ 4892561604 ENCODE Processing Pipeline 71a22f58ba439c995505d85a7eddaa07 https://www.encodeproject.org/files/ENCFF719VPI/@@download/ENCFF719VPI.bam released s3://encode-public/2016/12/10/e091bfc5-0553-4e3c-a7a2-d68706f9bfdd/ENCFF719VPI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF553SBC bam bam alignments GRCh38 ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF624TVL/, /files/ENCFF974YEI/ 4790929463 ENCODE Processing Pipeline d01ea5633b5de61fda63bcd64c7d3a9a https://www.encodeproject.org/files/ENCFF553SBC/@@download/ENCFF553SBC.bam released s3://encode-public/2020/06/02/8e6f0849-7266-4761-b1c3-33f331cbd0d0/ENCFF553SBC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF400FAB bam bam unfiltered alignments GRCh38 ENCSR456LAK Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF624TVL/, /files/ENCFF974YEI/ 6082881890 ENCODE Processing Pipeline ff1a15ea49180c294fc5b8c9c6c3f236 https://www.encodeproject.org/files/ENCFF400FAB/@@download/ENCFF400FAB.bam released s3://encode-public/2020/06/02/0d64d0cd-136a-4444-af6a-bd153cec0e31/ENCFF400FAB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF564CEO fastq fastq reads ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF496PKK/ 2631613920 Michael Snyder, Stanford 3fda7f8519424509e4895c0fb9280ea8 SRA:SRR6214375 https://www.encodeproject.org/files/ENCFF564CEO/@@download/ENCFF564CEO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/83f371cd-57cc-4cc4-b5c0-f63eb94a1e04/ENCFF564CEO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF496PKK fastq fastq reads ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF564CEO/ 3099205867 Michael Snyder, Stanford cb65e1486cc8b2b3356796f72daa374f SRA:SRR6214375 https://www.encodeproject.org/files/ENCFF496PKK/@@download/ENCFF496PKK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/6238893a-d0ba-426c-840a-f22ea910b56b/ENCFF496PKK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF097YRM bam bam unfiltered alignments hg19 ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF496PKK/, /files/ENCFF807MUK/, /files/ENCFF564CEO/ 5380759217 ENCODE Processing Pipeline 7090065ec1798a053fb11c5cab81eb8f https://www.encodeproject.org/files/ENCFF097YRM/@@download/ENCFF097YRM.bam released s3://encode-public/2016/12/10/ede484d0-6113-4857-a328-5dceee172e60/ENCFF097YRM.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF472GUK bam bam alignments hg19 ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF496PKK/, /files/ENCFF807MUK/, /files/ENCFF564CEO/ 3857909350 ENCODE Processing Pipeline ff76294f0c09a53a5a94c6a3863b51ff https://www.encodeproject.org/files/ENCFF472GUK/@@download/ENCFF472GUK.bam released s3://encode-public/2016/12/10/c066bcf2-2dc0-4fad-8d3d-ce2ad4190a52/ENCFF472GUK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF435MDR bam bam unfiltered alignments GRCh38 ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF496PKK/, /files/ENCFF564CEO/, /files/ENCFF643CGH/ 5388513970 ENCODE Processing Pipeline b268b395e32a5c8ffcd0ea24d895226b https://www.encodeproject.org/files/ENCFF435MDR/@@download/ENCFF435MDR.bam released s3://encode-public/2016/12/10/25dd538e-bd66-4b24-aa01-343bab06927f/ENCFF435MDR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF640XYK bam bam alignments GRCh38 ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF496PKK/, /files/ENCFF564CEO/, /files/ENCFF643CGH/ 3865542288 ENCODE Processing Pipeline dc90395c84f3118aba076e30ca474c98 https://www.encodeproject.org/files/ENCFF640XYK/@@download/ENCFF640XYK.bam released s3://encode-public/2016/12/10/e816ce7b-9fc0-4019-9201-56dd0c7fa7ca/ENCFF640XYK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF889VBV bam bam unfiltered alignments GRCh38 ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF564CEO/, /files/ENCFF496PKK/ 5392680393 ENCODE Processing Pipeline 437538b071ae27d4a3cf4c8fe7798825 https://www.encodeproject.org/files/ENCFF889VBV/@@download/ENCFF889VBV.bam released s3://encode-public/2020/06/02/cbf468e4-f8b5-4585-9783-2d873bd13485/ENCFF889VBV.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF274HRB bam bam alignments GRCh38 ENCSR783XDX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF564CEO/, /files/ENCFF496PKK/ 3798663358 ENCODE Processing Pipeline 151db8ad57d6e4d467c43facee921d97 https://www.encodeproject.org/files/ENCFF274HRB/@@download/ENCFF274HRB.bam released s3://encode-public/2020/06/02/08131a7a-df08-4221-8a30-6de9bef314a3/ENCFF274HRB.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF331RXU fastq fastq reads ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 single-ended 2882740918 Xiang-Dong Fu, UCSD 5ab7725480d03807311ab5f31f88e67e SRA:SRR10049562 https://www.encodeproject.org/files/ENCFF331RXU/@@download/ENCFF331RXU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/5687957c-092f-4724-87ee-21d5a27e950b/ENCFF331RXU.fastq.gz low read length ENCFF318ZTK fastq fastq reads ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 single-ended 3288063198 Xiang-Dong Fu, UCSD d6631123f02d64ae3bcd882d1ad5ba8e SRA:SRR10049563 https://www.encodeproject.org/files/ENCFF318ZTK/@@download/ENCFF318ZTK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/3f6a1357-6ab6-45e4-93cf-7cbb0b4092fe/ENCFF318ZTK.fastq.gz low read length ENCFF350QUB bam bam alignments hg19 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF331RXU/ 2475846037 ENCODE Processing Pipeline c856ef8faaedca65a254e3124c9781af https://www.encodeproject.org/files/ENCFF350QUB/@@download/ENCFF350QUB.bam released s3://encode-public/2016/02/26/7cb98c9e-d9f1-48cb-a81d-b9d79f52d201/ENCFF350QUB.bam ENCODE3 hg19 archived low read length ENCFF466QHR bam bam alignments hg19 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF318ZTK/, /files/ENCFF807MUK/ 2796091534 ENCODE Processing Pipeline 2cf9ac3291e5db42e69c14a5380823f7 https://www.encodeproject.org/files/ENCFF466QHR/@@download/ENCFF466QHR.bam released s3://encode-public/2016/02/26/35149030-b40c-4bfb-a9e1-cb9fe34e212d/ENCFF466QHR.bam ENCODE3 hg19 archived low read length ENCFF036CVA bam bam unfiltered alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF318ZTK/, /files/ENCFF643CGH/ 4471424957 ENCODE Processing Pipeline eda73156684f191ddd5fb9cd62d91399 https://www.encodeproject.org/files/ENCFF036CVA/@@download/ENCFF036CVA.bam released s3://encode-public/2016/05/06/94c129d5-bb49-409e-9a81-3c316129a2d0/ENCFF036CVA.bam ENCODE3 GRCh38 archived low read length ENCFF180IWG bam bam unfiltered alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF331RXU/ 3942311468 ENCODE Processing Pipeline e7db7aeb6c1ddcb829aa411da85f6698 https://www.encodeproject.org/files/ENCFF180IWG/@@download/ENCFF180IWG.bam released s3://encode-public/2016/05/06/60c5be1a-38ff-4fcf-9a36-342363a5e310/ENCFF180IWG.bam ENCODE3 GRCh38 archived low read length ENCFF388TPI bam bam alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF331RXU/ 2475643944 ENCODE Processing Pipeline a6750d349044abbb33423d5751745bc0 https://www.encodeproject.org/files/ENCFF388TPI/@@download/ENCFF388TPI.bam released s3://encode-public/2016/05/06/e840f272-8c9d-44a1-9394-ab3d3c20d250/ENCFF388TPI.bam ENCODE3 GRCh38 archived low read length ENCFF248LWZ bam bam alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF318ZTK/, /files/ENCFF643CGH/ 2795935526 ENCODE Processing Pipeline 4ab0b2e35a2018981f337f83bdf03b42 https://www.encodeproject.org/files/ENCFF248LWZ/@@download/ENCFF248LWZ.bam released s3://encode-public/2016/05/06/6baefd8f-2ea0-4595-80a2-d1a16a59d588/ENCFF248LWZ.bam ENCODE3 GRCh38 archived low read length ENCFF935BYD bam bam unfiltered alignments hg19 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF318ZTK/, /files/ENCFF807MUK/ 4452996121 ENCODE Processing Pipeline 519d891c840db7d410008154a0e579f9 https://www.encodeproject.org/files/ENCFF935BYD/@@download/ENCFF935BYD.bam released s3://encode-public/2017/02/14/20e2a8d5-c227-470d-91d2-f86fcd58dd5f/ENCFF935BYD.bam ENCODE3 hg19 archived low read length ENCFF244AKW bam bam unfiltered alignments hg19 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF331RXU/ 3925678637 ENCODE Processing Pipeline c182c23078eae60f2b96b0ed3fc75e31 https://www.encodeproject.org/files/ENCFF244AKW/@@download/ENCFF244AKW.bam released s3://encode-public/2017/02/14/bebbc265-ee3a-497a-8fe9-0660117874b6/ENCFF244AKW.bam ENCODE3 hg19 archived low read length ENCFF645NJV bam bam unfiltered alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF318ZTK/ 4682147635 ENCODE Processing Pipeline 8fdabd78f77bb46cdcdcc831b1998404 https://www.encodeproject.org/files/ENCFF645NJV/@@download/ENCFF645NJV.bam released s3://encode-public/2020/10/27/33782e40-eeda-4313-b4fb-942b245f452a/ENCFF645NJV.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF308OKT bam bam unfiltered alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF331RXU/ 4133740142 ENCODE Processing Pipeline 1abe5eb0800fd5ecac3d9b20b1f2a5e1 https://www.encodeproject.org/files/ENCFF308OKT/@@download/ENCFF308OKT.bam released s3://encode-public/2020/10/27/3f98e73f-97a8-4255-9d6f-c95b75ac3073/ENCFF308OKT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF280NBI bam bam alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF331RXU/ 2193715021 ENCODE Processing Pipeline d2e7af7b7ad663426c64808aee8a4a7c https://www.encodeproject.org/files/ENCFF280NBI/@@download/ENCFF280NBI.bam released s3://encode-public/2020/10/27/0beda642-6832-4407-9bc6-9b586719d9b8/ENCFF280NBI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF461ODQ bam bam alignments GRCh38 ENCSR464FDA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF318ZTK/ 2482364996 ENCODE Processing Pipeline 52d0c1d4a53cb1116cee8ba1aec1d79f https://www.encodeproject.org/files/ENCFF461ODQ/@@download/ENCFF461ODQ.bam released s3://encode-public/2020/10/27/81b1be7b-d2f2-40d5-bfc0-f354cf0cfa47/ENCFF461ODQ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF409PVN bam bam unfiltered alignments hg19 ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF390XLA/, /files/ENCFF783BXZ/ 6266067095 ENCODE Processing Pipeline 261bf9d92fc2d430d9b650283c4bf42e https://www.encodeproject.org/files/ENCFF409PVN/@@download/ENCFF409PVN.bam released s3://encode-public/2018/02/21/db6646f0-b3a7-47c0-8873-04937b37d704/ENCFF409PVN.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF390XLA fastq fastq reads ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF783BXZ/ 2824099353 Michael Snyder, Stanford 0ecabedb19e1fcc21336983c1a34ec6c SRA:SRR5111833 https://www.encodeproject.org/files/ENCFF390XLA/@@download/ENCFF390XLA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/c7781e43-19f4-4924-bdcc-aaacf5f544f9/ENCFF390XLA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF783BXZ fastq fastq reads ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF390XLA/ 2878699759 Michael Snyder, Stanford 54220056d02bd3ffe9c4f991411fdddc SRA:SRR5111833 https://www.encodeproject.org/files/ENCFF783BXZ/@@download/ENCFF783BXZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/c8341eb1-f1cb-41ae-b1c3-2066b05d3b6e/ENCFF783BXZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF847WWC bam bam alignments hg19 ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF390XLA/, /files/ENCFF783BXZ/ 4875641838 ENCODE Processing Pipeline bec4b685749d1d08b5b98b32e63e7a2f https://www.encodeproject.org/files/ENCFF847WWC/@@download/ENCFF847WWC.bam released s3://encode-public/2015/12/09/a8174177-7bc1-4923-8a02-913fe8a4ae1a/ENCFF847WWC.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF797ZEF bam bam unfiltered alignments GRCh38 ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF390XLA/, /files/ENCFF783BXZ/, /files/ENCFF643CGH/ 6276909450 ENCODE Processing Pipeline 59a2fc66e2ed1e5e3657c89601ecec9d https://www.encodeproject.org/files/ENCFF797ZEF/@@download/ENCFF797ZEF.bam released s3://encode-public/2016/05/06/c1b6f1c7-7ee9-42cf-9fc2-4a26e936e15d/ENCFF797ZEF.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF209VFR bam bam alignments GRCh38 ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF390XLA/, /files/ENCFF783BXZ/, /files/ENCFF643CGH/ 4880898339 ENCODE Processing Pipeline 762eea9c26b28ce942d221737edefd94 https://www.encodeproject.org/files/ENCFF209VFR/@@download/ENCFF209VFR.bam released s3://encode-public/2016/05/06/cbea3d4f-ad43-4d2a-92ab-4cb972c3ac42/ENCFF209VFR.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF300KNB bam bam unfiltered alignments GRCh38 ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF390XLA/, /files/ENCFF110MCL/, /files/ENCFF783BXZ/ 6308641022 ENCODE Processing Pipeline 79891d3d60ed5f34de677d7764febc92 https://www.encodeproject.org/files/ENCFF300KNB/@@download/ENCFF300KNB.bam released s3://encode-public/2020/06/13/0b240758-b158-4375-9e44-e0dbb1aff7ba/ENCFF300KNB.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF240GAG bam bam alignments GRCh38 ENCSR578SNR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10488/'], '@type': ['Target', 'Item'], 'name': 'CREB3-human', 'label': 'CREB3', '@id': '/targets/CREB3-human/', 'title': 'CREB3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fad03896-d3f9-4829-bfd2-eacdac16462b', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF390XLA/, /files/ENCFF110MCL/, /files/ENCFF783BXZ/ 4822154414 ENCODE Processing Pipeline 994e2c3337044d263f1c8cb6db2be414 https://www.encodeproject.org/files/ENCFF240GAG/@@download/ENCFF240GAG.bam released s3://encode-public/2020/06/13/55a1cbc9-e794-468e-bd65-770905fa1f14/ENCFF240GAG.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF535EZI fastq fastq reads ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF184KAN/ 2931117232 Michael Snyder, Stanford fddd3a765d1e4dd770e3118d3823a80f SRA:SRR6213898 https://www.encodeproject.org/files/ENCFF535EZI/@@download/ENCFF535EZI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/6351e88a-e0e5-4dab-91e8-6f072d3328a5/ENCFF535EZI.fastq.gz mild to moderate bottlenecking ENCFF184KAN fastq fastq reads ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF535EZI/ 2633075669 Michael Snyder, Stanford b175def9074c9796d22fc06d7b3d00a5 SRA:SRR6213898 https://www.encodeproject.org/files/ENCFF184KAN/@@download/ENCFF184KAN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/ece11da9-923b-4054-9d49-c6ec246e19bd/ENCFF184KAN.fastq.gz mild to moderate bottlenecking ENCFF856ZPM bam bam unfiltered alignments GRCh38 ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF535EZI/, /files/ENCFF184KAN/ 5507020583 ENCODE Processing Pipeline 2a6d07c474a9ebd9d2662c260412db99 https://www.encodeproject.org/files/ENCFF856ZPM/@@download/ENCFF856ZPM.bam released s3://encode-public/2017/01/27/471ad9f7-e6a3-40d2-9292-1900f5e36bac/ENCFF856ZPM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF084AUO bam bam alignments GRCh38 ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF535EZI/, /files/ENCFF184KAN/ 4535526149 ENCODE Processing Pipeline e0dc65f114a61a7cb146412efdc31d0b https://www.encodeproject.org/files/ENCFF084AUO/@@download/ENCFF084AUO.bam released s3://encode-public/2017/01/27/5f18ee77-c3c8-4612-aad8-807b53cf968b/ENCFF084AUO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF359BIP bam bam unfiltered alignments hg19 ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF535EZI/, /files/ENCFF184KAN/ 5496772950 ENCODE Processing Pipeline 69d288178c99287ffd5ff960531142c4 https://www.encodeproject.org/files/ENCFF359BIP/@@download/ENCFF359BIP.bam released s3://encode-public/2017/01/28/21c7d3fa-ff53-4e64-8e78-b9b24c3a30ea/ENCFF359BIP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF055UXI bam bam alignments hg19 ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF535EZI/, /files/ENCFF184KAN/ 4529775211 ENCODE Processing Pipeline 8d787bff7da33702cdd76b390066a90d https://www.encodeproject.org/files/ENCFF055UXI/@@download/ENCFF055UXI.bam released s3://encode-public/2017/01/28/b0991740-98c1-4e91-a09a-a636ae13195d/ENCFF055UXI.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF258SKY bam bam unfiltered alignments GRCh38 ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF184KAN/, /files/ENCFF535EZI/ 5487590369 ENCODE Processing Pipeline dda68047504de2d16b3672fbc9d1a1c2 https://www.encodeproject.org/files/ENCFF258SKY/@@download/ENCFF258SKY.bam released s3://encode-public/2020/06/02/5bffdb47-d80e-4eee-a738-6455b53487dc/ENCFF258SKY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF213CHU bam bam alignments GRCh38 ENCSR588APY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF184KAN/, /files/ENCFF535EZI/ 4461674222 ENCODE Processing Pipeline bd247903a645660fdb5e0601658631de https://www.encodeproject.org/files/ENCFF213CHU/@@download/ENCFF213CHU.bam released s3://encode-public/2020/06/02/3b6a7777-c7ea-45bb-9e1c-2a034c00dfe6/ENCFF213CHU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF412JUS bam bam unfiltered alignments hg19 ENCSR709DHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10379/'], '@type': ['Target', 'Item'], 'name': 'IRF9-human', 'label': 'IRF9', '@id': '/targets/IRF9-human/', 'title': 'IRF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5db9f9ae-f848-4e8d-80f2-adc5b4c18ae9', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF614IRS/, /files/ENCFF817GNU/ 5180389710 ENCODE Processing Pipeline b227b95f38cfb2bb7d7a1c7c192f0e10 https://www.encodeproject.org/files/ENCFF412JUS/@@download/ENCFF412JUS.bam released s3://encode-public/2018/02/21/faa68a7a-09cb-41a3-85a9-ccb969910877/ENCFF412JUS.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF817GNU fastq fastq reads ENCSR709DHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10379/'], '@type': ['Target', 'Item'], 'name': 'IRF9-human', 'label': 'IRF9', '@id': '/targets/IRF9-human/', 'title': 'IRF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5db9f9ae-f848-4e8d-80f2-adc5b4c18ae9', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF614IRS/ 2380074429 Michael Snyder, Stanford 8457b761cd446c7a0554dcc14c50076c SRA:SRR5112001 https://www.encodeproject.org/files/ENCFF817GNU/@@download/ENCFF817GNU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/2076a442-81c1-4f0b-be41-08b2684893b5/ENCFF817GNU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF614IRS fastq fastq reads ENCSR709DHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10379/'], '@type': ['Target', 'Item'], 'name': 'IRF9-human', 'label': 'IRF9', '@id': '/targets/IRF9-human/', 'title': 'IRF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5db9f9ae-f848-4e8d-80f2-adc5b4c18ae9', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF817GNU/ 2366233321 Michael Snyder, Stanford bd69169904963003e92f8cd8c59e11bc SRA:SRR5112001 https://www.encodeproject.org/files/ENCFF614IRS/@@download/ENCFF614IRS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/36236447-5cb9-46f3-9f74-6a6567abfd43/ENCFF614IRS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF472AKN bam bam alignments hg19 ENCSR709DHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10379/'], '@type': ['Target', 'Item'], 'name': 'IRF9-human', 'label': 'IRF9', '@id': '/targets/IRF9-human/', 'title': 'IRF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5db9f9ae-f848-4e8d-80f2-adc5b4c18ae9', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF614IRS/, /files/ENCFF817GNU/ 4259661288 ENCODE Processing Pipeline 359b2358a453ddedd175cb2334402265 https://www.encodeproject.org/files/ENCFF472AKN/@@download/ENCFF472AKN.bam released s3://encode-public/2015/12/09/670d1280-9d79-4baf-acb1-ca2c5c023e84/ENCFF472AKN.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF208ONE bam bam unfiltered alignments GRCh38 ENCSR709DHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10379/'], '@type': ['Target', 'Item'], 'name': 'IRF9-human', 'label': 'IRF9', '@id': '/targets/IRF9-human/', 'title': 'IRF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5db9f9ae-f848-4e8d-80f2-adc5b4c18ae9', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF614IRS/, /files/ENCFF817GNU/ 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'5db9f9ae-f848-4e8d-80f2-adc5b4c18ae9', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF614IRS/, /files/ENCFF817GNU/ 4262075669 ENCODE Processing Pipeline 0e9d3096c54e01b93e8ad4fd7b6a5510 https://www.encodeproject.org/files/ENCFF647SZO/@@download/ENCFF647SZO.bam released s3://encode-public/2016/05/06/c7f28b3a-657e-49e8-8d70-503a07746a9a/ENCFF647SZO.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF480JFK bam bam alignments GRCh38 ENCSR709DHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10379/'], '@type': ['Target', 'Item'], 'name': 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melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF681BGF/ 15024005 Kevin White, UChicago e8a89cc4a47585f54494483e7ca44c02 https://www.encodeproject.org/files/ENCFF110VDL/@@download/ENCFF110VDL.bigWig released s3://encode-public/2017/06/29/7da14342-96e9-4f60-9b96-08c3838b99c1/ENCFF110VDL.bigWig Lab custom dm3 archived ENCFF925GKH bigWig bigWig read-depth normalized signal dm6 ENCSR031YOM Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF709LKF/ 17142013 Kevin White, UChicago b367df44b1f6d5e22fde00e220c58c48 https://www.encodeproject.org/files/ENCFF925GKH/@@download/ENCFF925GKH.bigWig released s3://encode-public/2017/06/30/28ee8f08-9d47-4e56-91fb-484fae2ed336/ENCFF925GKH.bigWig Lab custom dm6 released ENCFF341VJA bigWig bigWig signal of unique reads dm6 ENCSR031YOM Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF709LKF/ 17135525 Kevin White, UChicago dc11937bff3fed2ec40797b25d1cd77b https://www.encodeproject.org/files/ENCFF341VJA/@@download/ENCFF341VJA.bigWig released s3://encode-public/2017/06/30/b4f1b519-d54e-439b-829b-c6d0abbb90b4/ENCFF341VJA.bigWig Lab custom dm6 released ENCFF203OJA bam bam unfiltered alignments GRCh38 ENCSR088SOR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF973HXW/ 872528548 ENCODE Processing Pipeline dbbf7901478d648f94bb93d53e953fb7 https://www.encodeproject.org/files/ENCFF203OJA/@@download/ENCFF203OJA.bam released s3://encode-public/2020/09/30/7212a7c8-5723-47d3-8426-9832a59a30dd/ENCFF203OJA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF807MDX bam bam alignments GRCh38 ENCSR088SOR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF973HXW/ 731686584 ENCODE Processing Pipeline 249017d451617875571dfda0f853ddcc https://www.encodeproject.org/files/ENCFF807MDX/@@download/ENCFF807MDX.bam released s3://encode-public/2020/09/30/b2c2e725-6197-4069-89e6-9b777ed0298c/ENCFF807MDX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF973HXW fastq fastq reads ENCSR088SOR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 646694941 Tim Reddy, Duke 5059753ede09c13a9c0ba398d274ede9 SRA:SRR5129545 https://www.encodeproject.org/files/ENCFF973HXW/@@download/ENCFF973HXW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/e7f5867a-e219-4069-a6df-f89ff0c0e632/ENCFF973HXW.fastq.gz ENCFF762RDU fastq fastq reads ENCSR088SOR Control 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alignments GRCh38 ENCSR088SOR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF762RDU/ 790167599 Tim Reddy, Duke 32be1b7595b452932423addac7f39179 https://www.encodeproject.org/files/ENCFF171YYX/@@download/ENCFF171YYX.bam released s3://encode-public/2016/12/15/9b8a70a7-8f56-4bf2-82c3-0ab823c3fe3d/ENCFF171YYX.bam Lab custom GRCh38 archived ENCFF631DES bam bam alignments GRCh38 ENCSR088SOR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF973HXW/ 699721457 Tim Reddy, Duke de62d13c2ad9d845644eab3bf8716abe https://www.encodeproject.org/files/ENCFF631DES/@@download/ENCFF631DES.bam released s3://encode-public/2016/12/15/19831ba7-df47-4692-b96f-1b99fa15177b/ENCFF631DES.bam Lab custom GRCh38 archived ENCFF298EPS bam bam alignments GRCh38 ENCSR088SOR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF448SPI/ 820289661 Tim Reddy, Duke d6a7f1470285c908548e0a3a8cfd4fd5 https://www.encodeproject.org/files/ENCFF298EPS/@@download/ENCFF298EPS.bam released s3://encode-public/2016/12/15/41832681-ff4e-4e0d-9e69-efe202e2c43d/ENCFF298EPS.bam Lab custom GRCh38 archived ENCFF788LJC bam bam unfiltered alignments GRCh38 ENCSR088SOR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-12-20 GGR sonication 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ENCFF365OGQ bam bam unfiltered alignments hg19 ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF746XJG/, /files/ENCFF338LYQ/ 6052389215 ENCODE Processing Pipeline 8fbc07a9d2ce2b77b9783f2968c2f85d https://www.encodeproject.org/files/ENCFF365OGQ/@@download/ENCFF365OGQ.bam released s3://encode-public/2018/02/21/f8f5a357-3862-4a9f-991b-4a0cfc2bfb4e/ENCFF365OGQ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF746XJG fastq fastq reads ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF338LYQ/ 2731336770 Michael Snyder, Stanford f6ee70f6c9dcd9cbcd94c23c88188249 SRA:SRR5111459 https://www.encodeproject.org/files/ENCFF746XJG/@@download/ENCFF746XJG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/a28f22e8-5f1b-41d0-85dc-55ab6dd986d6/ENCFF746XJG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF338LYQ fastq fastq reads ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF746XJG/ 2745011102 Michael Snyder, Stanford d2972ea42117cb1dffb1b660c14df46c SRA:SRR5111459 https://www.encodeproject.org/files/ENCFF338LYQ/@@download/ENCFF338LYQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/aed04f1e-03e7-4182-abd9-48bee82d1373/ENCFF338LYQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF099DHX bam bam alignments hg19 ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF746XJG/, /files/ENCFF338LYQ/ 4914302292 ENCODE Processing Pipeline 851f91855b35c747e60d1a6b3c003563 https://www.encodeproject.org/files/ENCFF099DHX/@@download/ENCFF099DHX.bam released s3://encode-public/2015/12/09/ebed3272-ff56-4ec5-9a9c-7c3da358b1be/ENCFF099DHX.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF303IUY bam bam unfiltered alignments GRCh38 ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF746XJG/, /files/ENCFF338LYQ/ 6063003544 ENCODE Processing Pipeline 5cefe094903145fcd2c5e3c4c3469e91 https://www.encodeproject.org/files/ENCFF303IUY/@@download/ENCFF303IUY.bam released s3://encode-public/2016/05/06/3b47c0d2-8134-465f-8045-0bc364cf18c4/ENCFF303IUY.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF343UNB bam bam alignments GRCh38 ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF746XJG/, /files/ENCFF338LYQ/ 4919362031 ENCODE Processing Pipeline a44cab72815edf652e102290564b90cd https://www.encodeproject.org/files/ENCFF343UNB/@@download/ENCFF343UNB.bam released s3://encode-public/2016/05/06/eafcf92b-f5e5-4285-ab4c-f9c2d4361d89/ENCFF343UNB.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF346GXN bam bam unfiltered alignments GRCh38 ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF338LYQ/, /files/ENCFF746XJG/ 6063092460 ENCODE Processing Pipeline f4363ec618c6109550767b58bbf94114 https://www.encodeproject.org/files/ENCFF346GXN/@@download/ENCFF346GXN.bam released s3://encode-public/2020/06/03/b860a32d-ccf5-47a2-a22c-d56dd86cc828/ENCFF346GXN.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF740DYA bam bam alignments GRCh38 ENCSR329YMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF24'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7572/'], '@type': ['Target', 'Item'], 'label': 'ZNF24', 'title': 'ZNF24 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ac3945ca-19a4-42de-905f-8edb2a0e43c0', 'schema_version': '14', 'name': 'ZNF24-human', '@id': '/targets/ZNF24-human/', 'status': 'released'} hg19 18 32875380 33131325 DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF338LYQ/, /files/ENCFF746XJG/ 4868738840 ENCODE Processing Pipeline eb9ad879009df966bca0ce6cb7ca1641 https://www.encodeproject.org/files/ENCFF740DYA/@@download/ENCFF740DYA.bam released s3://encode-public/2020/06/03/c3569468-8fc0-4f2c-8fa9-28401309072a/ENCFF740DYA.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF577LLL fastq fastq reads ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 single-ended 1373577494 Xiang-Dong Fu, UCSD 4eaa1913f6b8abc8ee9433ffd9ddb88a SRA:SRR6212606 https://www.encodeproject.org/files/ENCFF577LLL/@@download/ENCFF577LLL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/ae1eaad4-fbb6-42fd-be08-c13f3ffcffb3/ENCFF577LLL.fastq.gz low read length ENCFF363JFD fastq fastq reads ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 single-ended 1552674484 Xiang-Dong Fu, UCSD 8a1be52f6f90a8adcc84ac23d863c9bd SRA:SRR6212607 https://www.encodeproject.org/files/ENCFF363JFD/@@download/ENCFF363JFD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/a255701d-44c7-4536-acf3-7bda348ab275/ENCFF363JFD.fastq.gz low read length ENCFF641CEP bam bam alignments hg19 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF363JFD/, /files/ENCFF807MUK/ 1682520397 ENCODE Processing Pipeline e5f2819820927766ddf7f44f18839eb1 https://www.encodeproject.org/files/ENCFF641CEP/@@download/ENCFF641CEP.bam released s3://encode-public/2016/02/26/95b0c893-224b-499a-806d-144af81e33af/ENCFF641CEP.bam ENCODE3 hg19 archived low read length ENCFF493QSH bam bam alignments hg19 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF577LLL/ 1517357061 ENCODE Processing Pipeline 65963404f3b097ab987db8e52f75d88c https://www.encodeproject.org/files/ENCFF493QSH/@@download/ENCFF493QSH.bam released s3://encode-public/2016/02/26/0c07831a-eee3-4f73-a1be-76a07f5980ac/ENCFF493QSH.bam ENCODE3 hg19 archived low read length ENCFF814YFG bam bam unfiltered alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF577LLL/ 2001034411 ENCODE Processing Pipeline 84d36e8e1e77507a8134fc8e71690247 https://www.encodeproject.org/files/ENCFF814YFG/@@download/ENCFF814YFG.bam released s3://encode-public/2016/05/06/2c6622ec-2022-4b45-acc8-dba1ff5bf288/ENCFF814YFG.bam ENCODE3 GRCh38 archived low read length ENCFF560NTV bam bam unfiltered alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF363JFD/, /files/ENCFF643CGH/ 2248071070 ENCODE Processing Pipeline 4f993915001281aff156fba4ea2b7db1 https://www.encodeproject.org/files/ENCFF560NTV/@@download/ENCFF560NTV.bam released s3://encode-public/2016/05/06/170cc658-e02e-4161-8399-a4bb26544cb7/ENCFF560NTV.bam ENCODE3 GRCh38 archived low read length ENCFF120YSP bam bam alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF577LLL/ 1516168404 ENCODE Processing Pipeline 6cde57367d5bd1e349ac5e44f4c0b3c3 https://www.encodeproject.org/files/ENCFF120YSP/@@download/ENCFF120YSP.bam released s3://encode-public/2016/05/06/16e75c73-0c5d-443e-b6a9-89bee8bc560e/ENCFF120YSP.bam ENCODE3 GRCh38 archived low read length ENCFF906SAI bam bam alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF363JFD/, /files/ENCFF643CGH/ 1681239191 ENCODE Processing Pipeline 2f521417c98fbb296a3e7c37c2972d31 https://www.encodeproject.org/files/ENCFF906SAI/@@download/ENCFF906SAI.bam released s3://encode-public/2016/05/06/f1901d69-b21f-45df-a60c-38a99f84ab3b/ENCFF906SAI.bam ENCODE3 GRCh38 archived low read length ENCFF310YRB bam bam unfiltered alignments hg19 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF577LLL/ 1992659072 ENCODE Processing Pipeline 42a0ef8e1ab0297dc75ea9a22b80619c https://www.encodeproject.org/files/ENCFF310YRB/@@download/ENCFF310YRB.bam released s3://encode-public/2017/02/14/a1422c22-3b5b-4d61-abef-e33d4b7a50e8/ENCFF310YRB.bam ENCODE3 hg19 archived low read length ENCFF403MPD bam bam unfiltered alignments hg19 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF363JFD/, /files/ENCFF807MUK/ 2238152937 ENCODE Processing Pipeline a99885a418154c11f6faf3dec3d57376 https://www.encodeproject.org/files/ENCFF403MPD/@@download/ENCFF403MPD.bam released s3://encode-public/2017/02/14/487cdac6-a42b-4cf5-8878-215c0d4267b5/ENCFF403MPD.bam ENCODE3 hg19 archived low read length ENCFF180YEJ bam bam unfiltered alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF363JFD/ 2211596878 ENCODE Processing Pipeline cfd1ba2d2a3da1625f5aa9459383bb8a https://www.encodeproject.org/files/ENCFF180YEJ/@@download/ENCFF180YEJ.bam released s3://encode-public/2020/10/27/2bbc20f7-d99d-47d7-b05d-ec87b0d540e5/ENCFF180YEJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF742YBS bam bam alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF363JFD/ 1744940644 ENCODE Processing Pipeline 5e2db3393e4ee591df59d85764439b65 https://www.encodeproject.org/files/ENCFF742YBS/@@download/ENCFF742YBS.bam released s3://encode-public/2020/10/27/3512c5a3-59af-42d3-97bd-793c8dbd0fa5/ENCFF742YBS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF087LXB bam bam alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF577LLL/ 1570360359 ENCODE Processing Pipeline c3ef87c0c91253c3319548002b0d7dd9 https://www.encodeproject.org/files/ENCFF087LXB/@@download/ENCFF087LXB.bam released s3://encode-public/2020/10/27/cff2ccb4-bbb6-4808-8cca-382498894de1/ENCFF087LXB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF082ZQX bam bam unfiltered alignments GRCh38 ENCSR084AIG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-15 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF577LLL/ 1969098680 ENCODE Processing Pipeline 3596c0bc983a44baf79607b30715ff9f https://www.encodeproject.org/files/ENCFF082ZQX/@@download/ENCFF082ZQX.bam released s3://encode-public/2020/10/27/0d09f3f4-e675-4690-a987-bb88cda74632/ENCFF082ZQX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF108OBC tagAlign tagAlign alignments hg19 ENCSR785CRC Control ChIP-seq /human-donors/ENCDO024FMB/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF970DYV/, /files/ENCFF769CSS/ 169284812 Anshul Kundaje, Stanford 1c213a8bf547ebe2a3d619e85c883148 https://www.encodeproject.org/files/ENCFF108OBC/@@download/ENCFF108OBC.tagAlign.gz archived s3://encode-public/2016/05/02/60c3d85f-8594-4b37-ba2b-2a0690e62371/ENCFF108OBC.tagAlign.gz Lab custom hg19 archived low read length ENCFF217BYD bam bam redacted unfiltered alignments GRCh38 ENCSR785CRC Control ChIP-seq /human-donors/ENCDO024FMB/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970DYV/, /files/ENCFF769CSS/, /files/ENCFF643CGH/ 563459668 ENCODE Processing Pipeline ccba3f1b7f67e94ec56c619ecfc09d78 https://www.encodeproject.org/files/ENCFF217BYD/@@download/ENCFF217BYD.bam released s3://encode-public/2018/01/18/c6287d90-5aa4-4755-a8fd-4a4c61380d89/ENCFF217BYD.bam ENCODE3 GRCh38 archived low read length ENCFF717JNI bam bam redacted alignments GRCh38 ENCSR785CRC Control ChIP-seq /human-donors/ENCDO024FMB/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970DYV/, /files/ENCFF769CSS/, /files/ENCFF643CGH/ 385057796 ENCODE Processing Pipeline 05b152d74531f7a30f412499e3d994b9 https://www.encodeproject.org/files/ENCFF717JNI/@@download/ENCFF717JNI.bam released s3://encode-public/2018/01/18/d999a3b2-35f8-425f-a40a-3fd4ea820369/ENCFF717JNI.bam ENCODE3 GRCh38 archived low read length ENCFF235GYQ bam bam redacted unfiltered alignments hg19 ENCSR785CRC Control ChIP-seq /human-donors/ENCDO024FMB/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970DYV/, /files/ENCFF807MUK/, /files/ENCFF769CSS/ 557235954 ENCODE Processing Pipeline 8d93f1f648fd9fe02bae9f3f9d4f44a3 https://www.encodeproject.org/files/ENCFF235GYQ/@@download/ENCFF235GYQ.bam released s3://encode-public/2018/01/19/bb6a23c7-a2ed-41cf-82a1-5e4b5cd4819b/ENCFF235GYQ.bam ENCODE3 hg19 archived low read length ENCFF761NGI bam bam redacted alignments hg19 ENCSR785CRC Control ChIP-seq /human-donors/ENCDO024FMB/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970DYV/, /files/ENCFF807MUK/, /files/ENCFF769CSS/ 385008488 ENCODE Processing Pipeline 524f6edf98cba6a8ce4c223aa46c16d9 https://www.encodeproject.org/files/ENCFF761NGI/@@download/ENCFF761NGI.bam released s3://encode-public/2018/01/19/c852343b-efb3-4f9c-9b13-b44962069c57/ENCFF761NGI.bam ENCODE3 hg19 archived low read length ENCFF379XBX bam bam redacted alignments GRCh38 ENCSR785CRC Control ChIP-seq /human-donors/ENCDO024FMB/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF769CSS/, /files/ENCFF110MCL/, /files/ENCFF970DYV/ 1326421067 ENCODE Processing Pipeline c1c8e0f1d17655b0e46b4815557eb271 https://www.encodeproject.org/files/ENCFF379XBX/@@download/ENCFF379XBX.bam released s3://encode-public/2021/01/27/e69113db-73c6-49ea-b8cf-94461a596bb9/ENCFF379XBX.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF076MNL tagAlign tagAlign alignments hg19 ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF867XIS/ 133350781 Anshul Kundaje, Stanford 53b91ee8a3a31fd300aebe077c93938b https://www.encodeproject.org/files/ENCFF076MNL/@@download/ENCFF076MNL.tagAlign.gz archived s3://encode-public/2016/05/02/2cc9fc71-ff0b-460e-b9a1-cd729c031f8e/ENCFF076MNL.tagAlign.gz Lab custom hg19 archived low read length inconsistent ontology term ENCFF867XIS fastq fastq reads ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1015961660 Zhiping Weng, UMass d1a3ed5b8ce1944b23f65725fdf310d4 SRA:SRR316172 https://www.encodeproject.org/files/ENCFF867XIS/@@download/ENCFF867XIS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/19/e6c8d629-7b8e-4e6f-b6a0-5bf45ba92027/ENCFF867XIS.fastq.gz low read length inconsistent ontology term ENCFF903QIM bam bam unfiltered alignments GRCh38 ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF867XIS/ 1244793738 ENCODE Processing Pipeline e364f899f482510e1cbdd6bca698bad3 https://www.encodeproject.org/files/ENCFF903QIM/@@download/ENCFF903QIM.bam released s3://encode-public/2020/10/08/be50cd34-6c91-4090-b333-5f7c5271d307/ENCFF903QIM.bam ENCODE4 v1.5.1 GRCh38 released low read length inconsistent ontology term ENCFF889YCI bam bam alignments GRCh38 ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF867XIS/ 870189699 ENCODE Processing Pipeline e69b2097803e14e92a1224eefa9f361d https://www.encodeproject.org/files/ENCFF889YCI/@@download/ENCFF889YCI.bam released s3://encode-public/2020/10/08/8e9a4c98-d906-4bcf-8d34-3c0d07bafe45/ENCFF889YCI.bam ENCODE4 v1.5.1 GRCh38 released low read length inconsistent ontology term ENCFF433JWR bam bam unfiltered alignments GRCh38 ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF867XIS/, /files/ENCFF643CGH/ 1289376791 ENCODE Processing Pipeline 28d5fbf3fdee669dc309c6cc5b31d9e1 https://www.encodeproject.org/files/ENCFF433JWR/@@download/ENCFF433JWR.bam released s3://encode-public/2016/12/19/91b97703-70af-4d18-b85d-92a431da5236/ENCFF433JWR.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF875YSP bam bam unfiltered alignments hg19 ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF867XIS/, /files/ENCFF807MUK/ 1283020590 ENCODE Processing Pipeline 89eccf58470cda2009569db32a968e1e https://www.encodeproject.org/files/ENCFF875YSP/@@download/ENCFF875YSP.bam released s3://encode-public/2016/12/19/5b224454-656e-4cad-8c48-6399908ae5af/ENCFF875YSP.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF611KHN bam bam alignments hg19 ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF867XIS/, /files/ENCFF807MUK/ 785729235 ENCODE Processing Pipeline f117249b8b06fc1d6a281bee72449856 https://www.encodeproject.org/files/ENCFF611KHN/@@download/ENCFF611KHN.bam released s3://encode-public/2016/12/19/76720a55-bda3-45c1-ba38-1a30c98a3b51/ENCFF611KHN.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF385HZF bam bam alignments GRCh38 ENCSR633OJL Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF867XIS/, /files/ENCFF643CGH/ 785565245 ENCODE Processing Pipeline 849bf61230acc238556ff2393841cbd2 https://www.encodeproject.org/files/ENCFF385HZF/@@download/ENCFF385HZF.bam released s3://encode-public/2016/12/19/5f45aa06-6d21-48f1-a8d6-f635fd4a82a1/ENCFF385HZF.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF068QVD tagAlign tagAlign alignments hg19 ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF014ILF/ 106199008 Anshul Kundaje, Stanford e98507f9ac5d8a96418287246ffc1dcc https://www.encodeproject.org/files/ENCFF068QVD/@@download/ENCFF068QVD.tagAlign.gz archived s3://encode-public/2016/03/30/7aaa8281-15b4-4d77-8123-82e60cbab19d/ENCFF068QVD.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF014ILF fastq fastq reads ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 690635617 Zhiping Weng, UMass fbe87c6c05f88349512ac9021b21af58 SRA:SRR1068431 https://www.encodeproject.org/files/ENCFF014ILF/@@download/ENCFF014ILF.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/19/4c0ae7e6-333a-46b7-b646-ab16af6a6141/ENCFF014ILF.fastq.gz low read depth, low read length ENCFF250LDP bam bam unfiltered alignments hg19 ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF014ILF/, /files/ENCFF807MUK/ 816431002 ENCODE Processing Pipeline 7fbeb5aa0f7af9e1d9ae316c0a57630a https://www.encodeproject.org/files/ENCFF250LDP/@@download/ENCFF250LDP.bam released s3://encode-public/2016/12/19/b19bb570-899e-4c6b-af6b-b0876c0eed12/ENCFF250LDP.bam ENCODE3 hg19 archived low read depth, low read length ENCFF666HLX bam bam alignments hg19 ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF014ILF/, /files/ENCFF807MUK/ 568300445 ENCODE Processing Pipeline 2884c43254c9d801270fe4d449c86b8d https://www.encodeproject.org/files/ENCFF666HLX/@@download/ENCFF666HLX.bam released s3://encode-public/2016/12/19/a0f54b0e-4de5-4223-adb8-df212afb421d/ENCFF666HLX.bam ENCODE3 hg19 archived low read depth, low read length ENCFF555FBR bam bam unfiltered alignments GRCh38 ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF014ILF/, /files/ENCFF643CGH/ 821258253 ENCODE Processing Pipeline 1ad608a1d65ecdc90fa85a667319e7d7 https://www.encodeproject.org/files/ENCFF555FBR/@@download/ENCFF555FBR.bam released s3://encode-public/2016/12/19/1c38c677-1047-4033-9a3b-ce7eaa5c4245/ENCFF555FBR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF629HDU bam bam alignments GRCh38 ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF014ILF/, /files/ENCFF643CGH/ 568111952 ENCODE Processing Pipeline e25902be9cff68c6b71e7884458e2271 https://www.encodeproject.org/files/ENCFF629HDU/@@download/ENCFF629HDU.bam released s3://encode-public/2016/12/19/77e852cd-f909-40f3-945f-56a8cd2f9499/ENCFF629HDU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF849HXM bam bam unfiltered alignments GRCh38 ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF014ILF/ 797011071 ENCODE Processing Pipeline 1d021899cc9cc29b44db1133923e1155 https://www.encodeproject.org/files/ENCFF849HXM/@@download/ENCFF849HXM.bam released s3://encode-public/2020/11/13/093b52dc-3c2d-4c03-a637-fa4055970cfc/ENCFF849HXM.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF313XSX bam bam alignments GRCh38 ENCSR382CNP Control ChIP-seq /human-donors/ENCDO163OST/ EFO:0007102 iPS-15b cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF014ILF/ 611031453 ENCODE Processing Pipeline 4f9b26adb0f55a031955d5aa0027e4e4 https://www.encodeproject.org/files/ENCFF313XSX/@@download/ENCFF313XSX.bam released s3://encode-public/2020/11/13/ec9fd731-d24c-4103-8675-d1cccd752648/ENCFF313XSX.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF354EWL bam bam redacted alignments GRCh38 ENCSR586IQI Control ChIP-seq /human-donors/ENCDO601VUB/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF918DCV/, /files/ENCFF643CGH/ 265240174 ENCODE Processing Pipeline 5a00837521bf54a8665753b2132553f7 https://www.encodeproject.org/files/ENCFF354EWL/@@download/ENCFF354EWL.bam released s3://encode-public/2017/11/09/88ba0647-6a64-466e-85fd-dbd83696f379/ENCFF354EWL.bam ENCODE3 GRCh38 archived ENCFF893BIJ bam bam redacted unfiltered alignments GRCh38 ENCSR586IQI Control ChIP-seq /human-donors/ENCDO601VUB/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF918DCV/, /files/ENCFF643CGH/ 368880833 ENCODE Processing Pipeline 9e59cbc8bbd54381023a66ecce5efcb5 https://www.encodeproject.org/files/ENCFF893BIJ/@@download/ENCFF893BIJ.bam released s3://encode-public/2017/11/09/7f43ec9c-7751-439c-9c29-6ad85d3062f8/ENCFF893BIJ.bam ENCODE3 GRCh38 archived ENCFF784BGB bam bam redacted unfiltered alignments hg19 ENCSR586IQI Control ChIP-seq /human-donors/ENCDO601VUB/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF918DCV/, /files/ENCFF807MUK/ 361831829 ENCODE Processing Pipeline 77827c9bbb9c456da3a2e3d7b8a60ed9 https://www.encodeproject.org/files/ENCFF784BGB/@@download/ENCFF784BGB.bam released s3://encode-public/2018/01/20/01da9f78-b0b4-4fa5-b786-157aa8e33266/ENCFF784BGB.bam ENCODE3 hg19 archived ENCFF306KCN bam bam redacted alignments hg19 ENCSR586IQI Control ChIP-seq /human-donors/ENCDO601VUB/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF918DCV/, /files/ENCFF807MUK/ 264775541 ENCODE Processing Pipeline 15f343d8a3c5f7518238337163b78192 https://www.encodeproject.org/files/ENCFF306KCN/@@download/ENCFF306KCN.bam released s3://encode-public/2018/01/20/7de1985f-9552-4148-a146-ee046fcdf547/ENCFF306KCN.bam ENCODE3 hg19 archived ENCFF249QQY bam bam redacted alignments GRCh38 ENCSR586IQI Control ChIP-seq /human-donors/ENCDO601VUB/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF266EWA/ 1658241521 ENCODE Processing Pipeline 90095ba7d7fb7fd0f27cf56d21dce791 https://www.encodeproject.org/files/ENCFF249QQY/@@download/ENCFF249QQY.bam released s3://encode-public/2021/01/28/eb2a60b8-0237-49a0-9cc8-3a6dc35623fa/ENCFF249QQY.bam ENCODE4 v1.7.0 GRCh38 released ENCFF884HXF bam bam redacted unfiltered alignments GRCh38 ENCSR479BTD Control ChIP-seq /human-donors/ENCDO974LFM/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF277KNR/ 374052973 ENCODE Processing Pipeline a77f13deb6eca97ee854602e923d375b https://www.encodeproject.org/files/ENCFF884HXF/@@download/ENCFF884HXF.bam released s3://encode-public/2017/11/09/3c5d9791-eca2-4745-a372-c705eced341b/ENCFF884HXF.bam ENCODE3 GRCh38 archived ENCFF467NBR bam bam redacted alignments GRCh38 ENCSR479BTD Control ChIP-seq /human-donors/ENCDO974LFM/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF277KNR/ 302608225 ENCODE Processing Pipeline 374b9e700aa2ef1ad53c8ae689a8a59f https://www.encodeproject.org/files/ENCFF467NBR/@@download/ENCFF467NBR.bam released s3://encode-public/2017/11/09/b30a7438-f4f7-4c58-a214-47d9fdb51012/ENCFF467NBR.bam ENCODE3 GRCh38 archived ENCFF442DXB bam bam redacted unfiltered alignments hg19 ENCSR479BTD Control ChIP-seq /human-donors/ENCDO974LFM/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF277KNR/ 367451283 ENCODE Processing Pipeline 94785745d634e8f1025c84b4369b13c3 https://www.encodeproject.org/files/ENCFF442DXB/@@download/ENCFF442DXB.bam released s3://encode-public/2018/01/20/ba9a5554-400c-419a-af61-6998d8a62564/ENCFF442DXB.bam ENCODE3 hg19 archived ENCFF719GHZ bam bam redacted alignments hg19 ENCSR479BTD Control ChIP-seq /human-donors/ENCDO974LFM/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF277KNR/ 302178933 ENCODE Processing Pipeline 916f0609c7849f7c77ea7e93ddae12c9 https://www.encodeproject.org/files/ENCFF719GHZ/@@download/ENCFF719GHZ.bam released s3://encode-public/2018/01/20/b19b3dab-f8ea-4355-9351-0a40f384be9e/ENCFF719GHZ.bam ENCODE3 hg19 archived ENCFF791ZBY bam bam redacted alignments GRCh38 ENCSR479BTD Control ChIP-seq /human-donors/ENCDO974LFM/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF593OWO/, /files/ENCFF110MCL/ 1997972272 ENCODE Processing Pipeline 945670dc225298eab99a3dc2823cbe6d https://www.encodeproject.org/files/ENCFF791ZBY/@@download/ENCFF791ZBY.bam released s3://encode-public/2021/01/28/012fdb0a-3d19-4e67-a596-4351275327bc/ENCFF791ZBY.bam ENCODE4 v1.7.0 GRCh38 released ENCFF132BCH fastq fastq reads ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF031GRR/ 1454576740 Richard Myers, HAIB edafe5ea18b81ac624fae5a3e1fc6e3a SRA:SRR8660163 https://www.encodeproject.org/files/ENCFF132BCH/@@download/ENCFF132BCH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/9604f84a-cf9b-40e5-b0af-a14ff575699b/ENCFF132BCH.fastq.gz ENCFF031GRR fastq fastq reads ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF132BCH/ 1419936263 Richard Myers, HAIB cf2f6829d545507d8e7274e8edd3425f SRA:SRR8660163 https://www.encodeproject.org/files/ENCFF031GRR/@@download/ENCFF031GRR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/d2e78fff-65f4-4d02-9b9f-7df7b433fdfe/ENCFF031GRR.fastq.gz ENCFF263NGC bam bam unfiltered alignments GRCh38 ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF031GRR/, /files/ENCFF132BCH/, /files/ENCFF643CGH/ 3431947035 ENCODE Processing Pipeline 6cb232ca84d94a898f6a4f4167840350 https://www.encodeproject.org/files/ENCFF263NGC/@@download/ENCFF263NGC.bam released s3://encode-public/2017/02/02/7d8bc3d2-81e4-4873-ac41-64b4dcdafd74/ENCFF263NGC.bam ENCODE3 GRCh38 archived ENCFF730OVP bam bam unfiltered alignments hg19 ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF031GRR/, /files/ENCFF132BCH/, /files/ENCFF807MUK/ 3419179664 ENCODE Processing Pipeline f9f8257f5cf0c0a2fb89f9ee719c7fb4 https://www.encodeproject.org/files/ENCFF730OVP/@@download/ENCFF730OVP.bam released s3://encode-public/2017/02/02/590f90d8-aeb3-4e72-8d95-c49125a0cdef/ENCFF730OVP.bam ENCODE3 hg19 archived ENCFF578NQW bam bam alignments hg19 ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF031GRR/, /files/ENCFF132BCH/, /files/ENCFF807MUK/ 2411894489 ENCODE Processing Pipeline e2ed0f29103587fed24f2b1b585893dd https://www.encodeproject.org/files/ENCFF578NQW/@@download/ENCFF578NQW.bam released s3://encode-public/2017/02/02/df42668e-fe54-4586-86e9-6eaa6cbc21d8/ENCFF578NQW.bam ENCODE3 hg19 archived ENCFF389ZAK bam bam alignments GRCh38 ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF031GRR/, /files/ENCFF132BCH/, /files/ENCFF643CGH/ 2414534071 ENCODE Processing Pipeline 8e30f3953a8bb79505cca0dbc0086dcc https://www.encodeproject.org/files/ENCFF389ZAK/@@download/ENCFF389ZAK.bam released s3://encode-public/2017/02/02/aff429c2-3284-4582-a8ac-d4bb1e5be5ba/ENCFF389ZAK.bam ENCODE3 GRCh38 archived ENCFF237CNJ bam bam unfiltered alignments GRCh38 ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF031GRR/, /files/ENCFF132BCH/ 3621699104 ENCODE Processing Pipeline 39f6a25fc032ddcfde5c82e5f3bd194e https://www.encodeproject.org/files/ENCFF237CNJ/@@download/ENCFF237CNJ.bam released s3://encode-public/2020/06/06/90fbe50a-b671-4e8f-8c6d-d4d353c6c46c/ENCFF237CNJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF630ICJ bam bam alignments GRCh38 ENCSR762NXP Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF031GRR/, /files/ENCFF132BCH/ 2387289047 ENCODE Processing Pipeline f9e6be217fa901531777a5d8b8957584 https://www.encodeproject.org/files/ENCFF630ICJ/@@download/ENCFF630ICJ.bam released s3://encode-public/2020/06/06/1e57072c-a058-4edf-851a-feb0f6014533/ENCFF630ICJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF236MFB bam bam unfiltered alignments hg19 ENCSR150XYW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1456'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10168/'], '@type': ['Target', 'Item'], 'name': 'ZNF197-human', 'label': 'ZNF197', '@id': '/targets/ZNF197-human/', 'title': 'ZNF197 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '00ebcf0b-ffc8-4975-8bdf-f883761bfffe', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF159WTO/, /files/ENCFF807MUK/ 1524729995 ENCODE Processing Pipeline f252ba7e6e52bfed3821c40a94f270db https://www.encodeproject.org/files/ENCFF236MFB/@@download/ENCFF236MFB.bam released s3://encode-public/2018/02/22/eb6cc3b0-961a-46dd-aca1-dc0f089d2483/ENCFF236MFB.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF159WTO fastq fastq reads ENCSR150XYW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1456'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10168/'], '@type': ['Target', 'Item'], 'name': 'ZNF197-human', 'label': 'ZNF197', '@id': '/targets/ZNF197-human/', 'title': 'ZNF197 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '00ebcf0b-ffc8-4975-8bdf-f883761bfffe', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1451550760 Kevin White, UChicago 12e63038e5442406ad8f6e74e4ee00f3 SRA:SRR6212845 https://www.encodeproject.org/files/ENCFF159WTO/@@download/ENCFF159WTO.fastq.gz Illumina HiSeq 2500 /files/ENCFF924SLY/ released s3://encode-public/2016/03/14/583f089b-1e9b-485d-bfc1-2dbe0f494685/ENCFF159WTO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF977MTW bam bam alignments hg19 ENCSR150XYW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1456'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10168/'], '@type': ['Target', 'Item'], 'name': 'ZNF197-human', 'label': 'ZNF197', '@id': '/targets/ZNF197-human/', 'title': 'ZNF197 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '00ebcf0b-ffc8-4975-8bdf-f883761bfffe', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF159WTO/, /files/ENCFF807MUK/ 1206246437 ENCODE Processing Pipeline 88faf776d01025c50dadfe335cea7d43 https://www.encodeproject.org/files/ENCFF977MTW/@@download/ENCFF977MTW.bam released s3://encode-public/2016/04/23/93097833-cef3-4bea-9998-350a5f9742ff/ENCFF977MTW.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF486KWH bam bam unfiltered alignments GRCh38 ENCSR150XYW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1456'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10168/'], '@type': ['Target', 'Item'], 'name': 'ZNF197-human', 'label': 'ZNF197', '@id': '/targets/ZNF197-human/', 'title': 'ZNF197 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '00ebcf0b-ffc8-4975-8bdf-f883761bfffe', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF159WTO/, /files/ENCFF643CGH/ 1529375420 ENCODE Processing Pipeline 283d40c085ab987dda42e08a64631fbe https://www.encodeproject.org/files/ENCFF486KWH/@@download/ENCFF486KWH.bam released s3://encode-public/2016/05/06/2b5c94b0-bd58-4799-bcb7-101be925b10a/ENCFF486KWH.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF115YFR bam bam alignments GRCh38 ENCSR150XYW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1456'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10168/'], '@type': ['Target', 'Item'], 'name': 'ZNF197-human', 'label': 'ZNF197', '@id': '/targets/ZNF197-human/', 'title': 'ZNF197 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '00ebcf0b-ffc8-4975-8bdf-f883761bfffe', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF159WTO/, /files/ENCFF643CGH/ 1205682559 ENCODE Processing Pipeline aef5f678b444e6126c0901d6e9055492 https://www.encodeproject.org/files/ENCFF115YFR/@@download/ENCFF115YFR.bam released s3://encode-public/2016/05/06/2033cf6b-688e-4d2c-8d48-904a23749c00/ENCFF115YFR.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF946VRN bam bam unfiltered alignments GRCh38 ENCSR150XYW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1456'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10168/'], '@type': ['Target', 'Item'], 'name': 'ZNF197-human', 'label': 'ZNF197', '@id': '/targets/ZNF197-human/', 'title': 'ZNF197 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '00ebcf0b-ffc8-4975-8bdf-f883761bfffe', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF159WTO/ 1495069294 ENCODE Processing Pipeline f63b7d8e34690598846a98f9e84fcc98 https://www.encodeproject.org/files/ENCFF946VRN/@@download/ENCFF946VRN.bam released s3://encode-public/2020/10/27/aeba42fb-65d5-4498-9a15-ac0c05e81fae/ENCFF946VRN.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF338KUP bam bam alignments GRCh38 ENCSR150XYW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1456'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10168/'], '@type': ['Target', 'Item'], 'name': 'ZNF197-human', 'label': 'ZNF197', '@id': '/targets/ZNF197-human/', 'title': 'ZNF197 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '00ebcf0b-ffc8-4975-8bdf-f883761bfffe', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF159WTO/ 1243977303 ENCODE Processing Pipeline 1e1f0a99bedc857898c94f2a950562ee https://www.encodeproject.org/files/ENCFF338KUP/@@download/ENCFF338KUP.bam released s3://encode-public/2020/10/27/8e8da028-490f-49dc-a89a-f7c08592af56/ENCFF338KUP.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF155ZVH fastq fastq reads ENCSR768IJB Control ChIP-seq /fly-donors/ENCDO056OQE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37068/'], '@type': ['Target', 'Item'], 'name': 'Hsf-dmelanogaster', 'label': 'Hsf', '@id': '/targets/Hsf-dmelanogaster/', 'title': 'Hsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b08566a-ae4d-4abb-9d75-d28ee65dbd22', 'status': 'released'} dm3 2R 14008795 14031924 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 669607741 Kevin White, UChicago 2a7a37352f9f28310aa6ecd5e4de9dec https://www.encodeproject.org/files/ENCFF155ZVH/@@download/ENCFF155ZVH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/da8b93eb-b52a-40d7-82c9-08d451b05478/ENCFF155ZVH.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF003RFA bam bam alignments dm3 ENCSR768IJB Control ChIP-seq /fly-donors/ENCDO056OQE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37068/'], '@type': ['Target', 'Item'], 'name': 'Hsf-dmelanogaster', 'label': 'Hsf', '@id': '/targets/Hsf-dmelanogaster/', 'title': 'Hsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b08566a-ae4d-4abb-9d75-d28ee65dbd22', 'status': 'released'} dm3 2R 14008795 14031924 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF155ZVH/ 983707321 Kevin White, UChicago 349963e6e042f52d05ba253c78020721 https://www.encodeproject.org/files/ENCFF003RFA/@@download/ENCFF003RFA.bam released s3://encode-public/2015/08/03/38e55269-376e-4312-88bc-47b7b3e41461/ENCFF003RFA.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF605FQL bigWig bigWig read-depth normalized signal dm3 ENCSR768IJB Control ChIP-seq /fly-donors/ENCDO056OQE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37068/'], '@type': ['Target', 'Item'], 'name': 'Hsf-dmelanogaster', 'label': 'Hsf', '@id': '/targets/Hsf-dmelanogaster/', 'title': 'Hsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b08566a-ae4d-4abb-9d75-d28ee65dbd22', 'status': 'released'} dm3 2R 14008795 14031924 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF003RFA/ 15411006 Kevin White, UChicago 9caf0ad7059d1a99c151f7a4f9500194 https://www.encodeproject.org/files/ENCFF605FQL/@@download/ENCFF605FQL.bigWig released s3://encode-public/2015/10/05/b4b6b28c-6945-45ea-8376-415f15b36ac5/ENCFF605FQL.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF075RZP bigWig bigWig signal of unique reads dm3 ENCSR768IJB Control ChIP-seq /fly-donors/ENCDO056OQE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37068/'], '@type': ['Target', 'Item'], 'name': 'Hsf-dmelanogaster', 'label': 'Hsf', '@id': '/targets/Hsf-dmelanogaster/', 'title': 'Hsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b08566a-ae4d-4abb-9d75-d28ee65dbd22', 'status': 'released'} dm3 2R 14008795 14031924 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF003RFA/ 15392285 Kevin White, UChicago 30b5b4725d3e7b49468d7435fbdf05c7 https://www.encodeproject.org/files/ENCFF075RZP/@@download/ENCFF075RZP.bigWig released s3://encode-public/2015/10/05/bc0e5ddc-576a-456f-89b7-ebe2d7ffd470/ENCFF075RZP.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF312BZD bam bam alignments dm6 ENCSR768IJB Control ChIP-seq /fly-donors/ENCDO056OQE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37068/'], '@type': ['Target', 'Item'], 'name': 'Hsf-dmelanogaster', 'label': 'Hsf', '@id': '/targets/Hsf-dmelanogaster/', 'title': 'Hsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b08566a-ae4d-4abb-9d75-d28ee65dbd22', 'status': 'released'} dm3 2R 14008795 14031924 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF155ZVH/ 978677832 Kevin White, UChicago c1de16bdc6d85ff145adcd2c554a12f6 https://www.encodeproject.org/files/ENCFF312BZD/@@download/ENCFF312BZD.bam released s3://encode-public/2016/04/21/efb0f0da-05ae-4ee3-9439-352a48c2a985/ENCFF312BZD.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF005RCL bigWig bigWig signal of unique reads dm6 ENCSR768IJB Control ChIP-seq /fly-donors/ENCDO056OQE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37068/'], '@type': ['Target', 'Item'], 'name': 'Hsf-dmelanogaster', 'label': 'Hsf', '@id': '/targets/Hsf-dmelanogaster/', 'title': 'Hsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b08566a-ae4d-4abb-9d75-d28ee65dbd22', 'status': 'released'} dm3 2R 14008795 14031924 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF312BZD/ 17462830 Kevin White, UChicago e51400dfff7ec2561eb71fd8a04cda7f https://www.encodeproject.org/files/ENCFF005RCL/@@download/ENCFF005RCL.bigWig released s3://encode-public/2016/06/21/8c137b52-7fb2-4a25-8018-f8e21d5a5a32/ENCFF005RCL.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF276LXO bigWig bigWig read-depth normalized signal dm6 ENCSR768IJB Control ChIP-seq /fly-donors/ENCDO056OQE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37068/'], '@type': ['Target', 'Item'], 'name': 'Hsf-dmelanogaster', 'label': 'Hsf', '@id': '/targets/Hsf-dmelanogaster/', 'title': 'Hsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b08566a-ae4d-4abb-9d75-d28ee65dbd22', 'status': 'released'} dm3 2R 14008795 14031924 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF312BZD/ 17491371 Kevin White, UChicago 7586e3097a1f881dfdd083ccd1382f1b https://www.encodeproject.org/files/ENCFF276LXO/@@download/ENCFF276LXO.bigWig released s3://encode-public/2016/06/21/197d3715-3f70-4448-9008-60102bd9de64/ENCFF276LXO.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF766DIC fastq fastq reads ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF188JJJ/ 3196365749 Michael Snyder, Stanford 513d24e5b9c12cbb0011edcbe053c41c SRA:SRR8660397 https://www.encodeproject.org/files/ENCFF766DIC/@@download/ENCFF766DIC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/02/43bcc378-f6b3-466a-8209-3d969d5d8600/ENCFF766DIC.fastq.gz mild to moderate bottlenecking ENCFF188JJJ fastq fastq reads ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF766DIC/ 3798657685 Michael Snyder, Stanford 3ed26e69fae694bd0cc981854578f0d9 SRA:SRR8660397 https://www.encodeproject.org/files/ENCFF188JJJ/@@download/ENCFF188JJJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/02/5bd7d220-7726-42bc-b2af-5b3d6ce6f4df/ENCFF188JJJ.fastq.gz mild to moderate bottlenecking ENCFF149TQI bam bam unfiltered alignments GRCh38 ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF766DIC/, /files/ENCFF643CGH/, /files/ENCFF188JJJ/ 6616612664 ENCODE Processing Pipeline af83d97c767109b47227d20752ac0847 https://www.encodeproject.org/files/ENCFF149TQI/@@download/ENCFF149TQI.bam released s3://encode-public/2017/02/07/6c39946b-ce0d-435f-af9f-7a5698ead189/ENCFF149TQI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF333CVU bam bam unfiltered alignments hg19 ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF766DIC/, /files/ENCFF807MUK/, /files/ENCFF188JJJ/ 6606004660 ENCODE Processing Pipeline 049f301cae880f0911facb19da3c72e5 https://www.encodeproject.org/files/ENCFF333CVU/@@download/ENCFF333CVU.bam released s3://encode-public/2017/02/07/f369fca0-0203-4fe5-be60-50fb6390a061/ENCFF333CVU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF564OLU bam bam alignments hg19 ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF766DIC/, /files/ENCFF807MUK/, /files/ENCFF188JJJ/ 5108144853 ENCODE Processing Pipeline 9d5364af38de7fa09c71c238553f2828 https://www.encodeproject.org/files/ENCFF564OLU/@@download/ENCFF564OLU.bam released s3://encode-public/2017/02/07/385e7776-0940-4a5e-96ff-2a1fa4337c2d/ENCFF564OLU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF804GMA bam bam alignments GRCh38 ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF766DIC/, /files/ENCFF643CGH/, /files/ENCFF188JJJ/ 5118493200 ENCODE Processing Pipeline c5ac5a224aa0b9ee882942def63acf2e https://www.encodeproject.org/files/ENCFF804GMA/@@download/ENCFF804GMA.bam released s3://encode-public/2017/02/07/0e00f65a-ed91-4201-883b-2c7ae36c4637/ENCFF804GMA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF151ZHT bam bam unfiltered alignments GRCh38 ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF766DIC/, /files/ENCFF188JJJ/ 6617803236 ENCODE Processing Pipeline 2f54dee57501c7f99d92b13116c0cb3a https://www.encodeproject.org/files/ENCFF151ZHT/@@download/ENCFF151ZHT.bam released s3://encode-public/2020/06/02/fc43db39-5725-4ca2-9d2b-858b2c7aaf51/ENCFF151ZHT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF287NNF bam bam alignments GRCh38 ENCSR457JBY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF766DIC/, /files/ENCFF188JJJ/ 4988964100 ENCODE Processing Pipeline 69d6db7c18e52e51a1554abca572f1d7 https://www.encodeproject.org/files/ENCFF287NNF/@@download/ENCFF287NNF.bam released s3://encode-public/2020/06/02/82ebfdfb-cc43-4b7f-8754-40a25b8aa920/ENCFF287NNF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF224URA tagAlign tagAlign alignments hg19 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF294QAL/ 248701049 Anshul Kundaje, Stanford 28a6d0c85855431e7dd922f2a6173268 https://www.encodeproject.org/files/ENCFF224URA/@@download/ENCFF224URA.tagAlign.gz archived s3://encode-public/2016/03/30/7303ab08-c853-4eb1-b3bc-d6d7f9f55581/ENCFF224URA.tagAlign.gz Lab custom hg19 archived low read length inconsistent ontology term ENCFF829KRC bam bam redacted unfiltered alignments GRCh38 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF294QAL/ 729379446 ENCODE Processing Pipeline 3eaed41901206b7b10849699cf394c4d https://www.encodeproject.org/files/ENCFF829KRC/@@download/ENCFF829KRC.bam released s3://encode-public/2018/01/18/a118d10f-c5d1-40e4-992e-d745f0f39f36/ENCFF829KRC.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF690OMF bam bam redacted alignments GRCh38 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF294QAL/ 494922592 ENCODE Processing Pipeline 434ec950c593130f205358dc5c2b2dcd https://www.encodeproject.org/files/ENCFF690OMF/@@download/ENCFF690OMF.bam released s3://encode-public/2018/01/18/2349391b-9e0d-40d9-b625-99f022e0d765/ENCFF690OMF.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF539DFN bam bam redacted unfiltered alignments hg19 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF294QAL/ 721746593 ENCODE Processing Pipeline 597f552f3247b31bd15a9dd24e3e0cfc https://www.encodeproject.org/files/ENCFF539DFN/@@download/ENCFF539DFN.bam released s3://encode-public/2018/01/19/8c87e39d-7520-4837-9365-225e88668147/ENCFF539DFN.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF342DTQ bam bam redacted alignments hg19 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF294QAL/ 494946203 ENCODE Processing Pipeline 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/files/ENCFF807MUK/, /files/ENCFF204RVH/ 1932412407 ENCODE Processing Pipeline c946181fb2da122e38595e23a6191666 https://www.encodeproject.org/files/ENCFF274TML/@@download/ENCFF274TML.bam released s3://encode-public/2018/01/25/98315302-6da2-48dc-abf7-b4c838d049bb/ENCFF274TML.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF714PBR bam bam unfiltered alignments GRCh38 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF204RVH/ 1945188998 ENCODE Processing Pipeline 65fe57d446c73c72b75eec90c4c38325 https://www.encodeproject.org/files/ENCFF714PBR/@@download/ENCFF714PBR.bam released s3://encode-public/2018/01/25/b1707df2-10cb-405c-a6fa-ea4b1664a5f7/ENCFF714PBR.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF742MJT bam bam alignments GRCh38 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF204RVH/ 1297975490 ENCODE Processing Pipeline 8e432890db9ab1c3aa0d313c99c7eb0a https://www.encodeproject.org/files/ENCFF742MJT/@@download/ENCFF742MJT.bam released s3://encode-public/2018/01/25/bd4e617b-1d38-4a99-ac49-95db3dad3254/ENCFF742MJT.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF998SEO bam bam alignments hg19 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF204RVH/ 1298249686 ENCODE Processing Pipeline 9088b58beccc21985e7004b868e1d7d7 https://www.encodeproject.org/files/ENCFF998SEO/@@download/ENCFF998SEO.bam released s3://encode-public/2018/01/25/283b5d53-32df-486b-8532-dc456ce2dd9b/ENCFF998SEO.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF660SUD bam bam redacted alignments GRCh38 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF204RVH/, /files/ENCFF110MCL/ 1382967113 ENCODE Processing Pipeline 7632a7d4e79c5da2bc08e2c700d5b1a8 https://www.encodeproject.org/files/ENCFF660SUD/@@download/ENCFF660SUD.bam released s3://encode-public/2021/01/27/f50ca51c-7503-463b-b4a5-0f9b07783e7c/ENCFF660SUD.bam ENCODE4 v1.7.0 GRCh38 released low read length inconsistent ontology term ENCFF342JLJ bam bam redacted alignments GRCh38 ENCSR538NBB Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000136 adipocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF294QAL/, /files/ENCFF110MCL/ 1580405930 ENCODE Processing Pipeline 0e6bcaea3dee213164d91a218dcf09e2 https://www.encodeproject.org/files/ENCFF342JLJ/@@download/ENCFF342JLJ.bam released s3://encode-public/2021/01/27/b077e94d-51c2-4037-98c6-5210818e1fb6/ENCFF342JLJ.bam ENCODE4 v1.7.0 GRCh38 released low read length inconsistent ontology term ENCFF851FYR fastq fastq reads ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 989022152 Bradley Bernstein, Broad 9b31dd91a08cb301565497a748c6875a SRA:SRR10838143 https://www.encodeproject.org/files/ENCFF851FYR/@@download/ENCFF851FYR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/d5d3f076-ed63-4adb-af4d-6aeaf3561408/ENCFF851FYR.fastq.gz ENCFF110YML fastq fastq reads ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 565246478 Bradley Bernstein, Broad 771d83ffbca65e76f5264bd08dda9f55 SRA:SRR10838139 https://www.encodeproject.org/files/ENCFF110YML/@@download/ENCFF110YML.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/9988d4ab-4147-4f71-b1bb-2b86a2c28b24/ENCFF110YML.fastq.gz ENCFF344HDU fastq fastq reads ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 1027226088 Bradley Bernstein, Broad 5986ed6a3626e452b95229cc6bd8d391 SRA:SRR10838144 https://www.encodeproject.org/files/ENCFF344HDU/@@download/ENCFF344HDU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/a1457c07-070b-4572-b643-9b001f0433f1/ENCFF344HDU.fastq.gz ENCFF654VWC fastq fastq reads ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 555956965 Bradley Bernstein, Broad 2369209264fe25c9075c1d8e1900a837 SRA:SRR10838140 https://www.encodeproject.org/files/ENCFF654VWC/@@download/ENCFF654VWC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/4ecdcde8-2c8f-4339-900d-e5e163052d60/ENCFF654VWC.fastq.gz ENCFF021QIV fastq fastq reads ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 557364453 Bradley Bernstein, Broad c392ce7bb74adf0c492465bca848ce38 SRA:SRR10838141 https://www.encodeproject.org/files/ENCFF021QIV/@@download/ENCFF021QIV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/ee74cf78-1954-4b78-b5ca-971fb47e7030/ENCFF021QIV.fastq.gz ENCFF717AFP fastq fastq reads ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 561442922 Bradley Bernstein, Broad d9c1266a8520589e2cd00c06d6f610fa SRA:SRR10838142 https://www.encodeproject.org/files/ENCFF717AFP/@@download/ENCFF717AFP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/4e6dc430-15b8-4857-81f0-d9c9d521b761/ENCFF717AFP.fastq.gz ENCFF460OKA bam bam unfiltered alignments GRCh38 ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF110YML/, /files/ENCFF654VWC/, /files/ENCFF021QIV/, /files/ENCFF344HDU/, /files/ENCFF717AFP/, /files/ENCFF851FYR/ 4157036460 ENCODE Processing Pipeline 9cfc91078fa8ff779c5d06387e6dc2db https://www.encodeproject.org/files/ENCFF460OKA/@@download/ENCFF460OKA.bam released s3://encode-public/2019/08/11/12fd7e53-fdba-411b-994d-5e9f36f217d8/ENCFF460OKA.bam ENCODE3 GRCh38 archived ENCFF456FNI bam bam unfiltered alignments hg19 ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110YML/, /files/ENCFF807MUK/, /files/ENCFF654VWC/, /files/ENCFF021QIV/, /files/ENCFF344HDU/, /files/ENCFF717AFP/, /files/ENCFF851FYR/ 4144863911 ENCODE Processing Pipeline 9abea223103ca986a05f14f4d08190f0 https://www.encodeproject.org/files/ENCFF456FNI/@@download/ENCFF456FNI.bam released s3://encode-public/2019/08/11/4638c40f-8fd4-4807-a44b-8e1230cb7644/ENCFF456FNI.bam ENCODE3 hg19 archived ENCFF401SDG bam bam alignments hg19 ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110YML/, /files/ENCFF807MUK/, /files/ENCFF654VWC/, /files/ENCFF021QIV/, /files/ENCFF344HDU/, /files/ENCFF717AFP/, /files/ENCFF851FYR/ 3463745615 ENCODE Processing Pipeline f29bee90b95429ea6e7b7981af603b28 https://www.encodeproject.org/files/ENCFF401SDG/@@download/ENCFF401SDG.bam released s3://encode-public/2019/08/11/3e918a0c-e8cc-46c7-9e93-3bd4b9a674b0/ENCFF401SDG.bam ENCODE3 hg19 archived ENCFF573DZT bam bam alignments GRCh38 ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF110YML/, /files/ENCFF654VWC/, /files/ENCFF021QIV/, /files/ENCFF344HDU/, /files/ENCFF717AFP/, /files/ENCFF851FYR/ 3468594464 ENCODE Processing Pipeline 6eed4b122f31324298e2be487fe1f31e https://www.encodeproject.org/files/ENCFF573DZT/@@download/ENCFF573DZT.bam released s3://encode-public/2019/08/11/85973a66-e075-4a41-813a-3fbaba95cbee/ENCFF573DZT.bam ENCODE3 GRCh38 archived ENCFF573XKP bam bam unfiltered alignments GRCh38 ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF717AFP/, /files/ENCFF851FYR/, /files/ENCFF021QIV/, /files/ENCFF110YML/, /files/ENCFF654VWC/, /files/ENCFF344HDU/, /files/ENCFF110MCL/ 4132683607 ENCODE Processing Pipeline 17b7d04f6969747d7c183fbfca9af2cc https://www.encodeproject.org/files/ENCFF573XKP/@@download/ENCFF573XKP.bam released s3://encode-public/2020/09/19/1acd6bf7-ec6a-46e0-9ef3-e8ed31868f1b/ENCFF573XKP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF852MBK bam bam alignments GRCh38 ENCSR620GYX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF717AFP/, /files/ENCFF851FYR/, /files/ENCFF021QIV/, /files/ENCFF110YML/, /files/ENCFF654VWC/, /files/ENCFF344HDU/, /files/ENCFF110MCL/ 3483783330 ENCODE Processing Pipeline b4782648a8e97382980d772a0307c46a https://www.encodeproject.org/files/ENCFF852MBK/@@download/ENCFF852MBK.bam released s3://encode-public/2020/09/19/574cb514-6983-4e3c-a6fd-faa1fbed98c2/ENCFF852MBK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF248GPO bam bam redacted unfiltered alignments GRCh38 ENCSR126ZPV Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF687WCW/ 405773717 ENCODE Processing Pipeline e7dc4261290dd278bcc83cec6271cd93 https://www.encodeproject.org/files/ENCFF248GPO/@@download/ENCFF248GPO.bam released s3://encode-public/2017/10/16/bf0ea4b5-5125-4032-b65d-628e507a9ca1/ENCFF248GPO.bam ENCODE3 GRCh38 archived low read length ENCFF855VQK bam bam redacted alignments GRCh38 ENCSR126ZPV Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF687WCW/ 223659418 ENCODE Processing Pipeline decdfcb756a6734c3f85efcfc007961a https://www.encodeproject.org/files/ENCFF855VQK/@@download/ENCFF855VQK.bam released s3://encode-public/2017/10/16/47a42a29-51d1-495f-8376-1781d6ef8ca5/ENCFF855VQK.bam ENCODE3 GRCh38 archived low read length ENCFF002QZP bam bam redacted unfiltered alignments hg19 ENCSR126ZPV Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF687WCW/ 265293665 ENCODE Processing Pipeline bad512db0f3aeb9ec0e8febd6911b3d8 https://www.encodeproject.org/files/ENCFF002QZP/@@download/ENCFF002QZP.bam released s3://encode-public/2018/01/20/0d600afe-9219-4a07-9381-28ba69964d0a/ENCFF002QZP.bam ENCODE3 hg19 archived low read length ENCFF532FFV bam bam redacted alignments hg19 ENCSR126ZPV Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF687WCW/ 178478898 ENCODE Processing Pipeline 31c4fa1b65e0e766fc676412be4b92b5 https://www.encodeproject.org/files/ENCFF532FFV/@@download/ENCFF532FFV.bam released s3://encode-public/2018/01/20/8536fa36-4c21-4363-8c5d-a951914c71be/ENCFF532FFV.bam ENCODE3 hg19 archived low read length ENCFF684PJI bam bam redacted alignments GRCh38 ENCSR126ZPV Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002305 layer of hippocampus 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ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF375CUH/ 1622497654 Bradley Bernstein, Broad 3ed2f54cf9b2ecc158c61214f2a1076f SRA:SRR5331629 https://www.encodeproject.org/files/ENCFF243MZN/@@download/ENCFF243MZN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/23/a78183e5-cd57-4dfb-b2c2-f99edbe44c58/ENCFF243MZN.fastq.gz ENCFF915ESR fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 single-ended 2292402107 Bradley Bernstein, Broad 0367e86c11b673a4cf96bcebb7c9d29f https://www.encodeproject.org/files/ENCFF915ESR/@@download/ENCFF915ESR.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/04/14/fc2bcc5f-7b38-4e98-9f15-7cfc6cc80df3/ENCFF915ESR.fastq.gz ENCFF584YEG fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF802LTL/ 1383877394 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https://www.encodeproject.org/files/ENCFF527WMD/@@download/ENCFF527WMD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/da06a687-87f5-4984-afd1-9f2e2466154f/ENCFF527WMD.fastq.gz ENCFF452ROQ fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF335TOI/ 1350697905 Bradley Bernstein, Broad ef4e79179b3fa11612c5dc5c37fc1310 SRA:SRR5331633 https://www.encodeproject.org/files/ENCFF452ROQ/@@download/ENCFF452ROQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/4e20f1a4-502e-4a64-b7b6-e769f7ad4a14/ENCFF452ROQ.fastq.gz ENCFF639RMG fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF830CTU/ 987281387 Bradley Bernstein, Broad 71925f8595efd152a8b5c1a77d471dd5 SRA:SRR5331626 https://www.encodeproject.org/files/ENCFF639RMG/@@download/ENCFF639RMG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/7aff01e2-6cb6-4119-b6cc-938e58bb68df/ENCFF639RMG.fastq.gz ENCFF830CTU fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 paired-ended 2 /files/ENCFF639RMG/ 1010211522 Bradley Bernstein, Broad 26717ee0cfd3aaf5696337893eb06645 SRA:SRR5331626 https://www.encodeproject.org/files/ENCFF830CTU/@@download/ENCFF830CTU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/81f8f46f-032d-4624-b0ed-83399e805b5c/ENCFF830CTU.fastq.gz ENCFF522PVI fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF272GOE/ 958988346 Bradley Bernstein, Broad 764a3d7a0cd847019626e72632edb87c SRA:SRR5331627 https://www.encodeproject.org/files/ENCFF522PVI/@@download/ENCFF522PVI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/2878ff4d-5191-4318-a875-f57aab8386aa/ENCFF522PVI.fastq.gz ENCFF272GOE fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 paired-ended 2 /files/ENCFF522PVI/ 982782960 Bradley Bernstein, Broad e0602e245bb356df47e4f58483059386 SRA:SRR5331627 https://www.encodeproject.org/files/ENCFF272GOE/@@download/ENCFF272GOE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/15/fb7d0015-ec49-4040-ab6a-889ae12f4743/ENCFF272GOE.fastq.gz ENCFF163PYU fastq fastq reads ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF486LTO/ 994513676 Bradley Bernstein, Broad d236166300c2129f0254f3c411072e76 SRA:SRR5331628 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alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF163PYU/, /files/ENCFF522PVI/, /files/ENCFF716YLE/, /files/ENCFF272GOE/, /files/ENCFF665BBC/, /files/ENCFF639RMG/, /files/ENCFF830CTU/, /files/ENCFF486LTO/ 7343596274 ENCODE Processing Pipeline 08979d46245ad14db8f14b0a882fcef7 https://www.encodeproject.org/files/ENCFF016PFU/@@download/ENCFF016PFU.bam released s3://encode-public/2016/11/15/f1c6318a-2292-4a7b-b35f-27d63ebf43e9/ENCFF016PFU.bam ENCODE3 GRCh38 archived ENCFF354IBV bam bam unfiltered alignments hg19 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF584YEG/, /files/ENCFF452ROQ/, /files/ENCFF807MUK/, /files/ENCFF375CUH/, /files/ENCFF802LTL/, /files/ENCFF057DOL/, /files/ENCFF335TOI/, /files/ENCFF243MZN/, /files/ENCFF863XGE/, /files/ENCFF527WMD/, 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/human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF584YEG/, /files/ENCFF452ROQ/, /files/ENCFF643CGH/, /files/ENCFF375CUH/, /files/ENCFF802LTL/, /files/ENCFF057DOL/, /files/ENCFF335TOI/, /files/ENCFF243MZN/, /files/ENCFF863XGE/, /files/ENCFF527WMD/, /files/ENCFF274YMK/ 13537566652 ENCODE Processing Pipeline 108cfdd8cffe2073606c3c9713cb8a11 https://www.encodeproject.org/files/ENCFF535SOA/@@download/ENCFF535SOA.bam released s3://encode-public/2016/11/15/61fdede4-5cb1-4528-b4fd-72a318ac0ed6/ENCFF535SOA.bam ENCODE3 GRCh38 archived ENCFF356MAB bam bam alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF163PYU/, /files/ENCFF522PVI/, /files/ENCFF716YLE/, /files/ENCFF272GOE/, /files/ENCFF665BBC/, /files/ENCFF639RMG/, /files/ENCFF830CTU/, /files/ENCFF486LTO/ 6287251047 ENCODE Processing Pipeline 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bam unfiltered alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 /files/ENCFF716YLE/, /files/ENCFF643CGH/, /files/ENCFF639RMG/, /files/ENCFF163PYU/, /files/ENCFF522PVI/ 3653303693 ENCODE Processing Pipeline 1eb52628dc48416880c17779c61bc5ff https://www.encodeproject.org/files/ENCFF855LCR/@@download/ENCFF855LCR.bam released s3://encode-public/2017/01/10/ed96b03c-2e99-40a8-8416-a0e57df10860/ENCFF855LCR.bam ENCODE3 GRCh38 archived ENCFF128JTM bam bam unfiltered alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF584YEG/, /files/ENCFF452ROQ/, /files/ENCFF643CGH/, /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF527WMD/ 6815619455 ENCODE Processing Pipeline 9aa51bd96fde8ecd490b394d5192bcf8 https://www.encodeproject.org/files/ENCFF128JTM/@@download/ENCFF128JTM.bam released s3://encode-public/2017/01/10/1dbe43b8-ad28-4f35-902c-0f52db993eeb/ENCFF128JTM.bam ENCODE3 GRCh38 archived ENCFF521ZZZ bam bam alignments hg19 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 /files/ENCFF716YLE/, /files/ENCFF807MUK/, /files/ENCFF639RMG/, /files/ENCFF163PYU/, /files/ENCFF522PVI/ 3025477887 ENCODE Processing Pipeline fce9542297c11b9d277c61f653cefd3c https://www.encodeproject.org/files/ENCFF521ZZZ/@@download/ENCFF521ZZZ.bam released s3://encode-public/2017/01/10/a5ad571d-333d-4685-ad48-c60f0c27c291/ENCFF521ZZZ.bam ENCODE3 hg19 archived ENCFF534FLA bam bam unfiltered alignments hg19 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF584YEG/, /files/ENCFF452ROQ/, /files/ENCFF807MUK/, /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF527WMD/ 6786367405 ENCODE Processing Pipeline 8861738e8f463a42c835ecab820eb99c https://www.encodeproject.org/files/ENCFF534FLA/@@download/ENCFF534FLA.bam released s3://encode-public/2017/01/10/60327dc7-053c-4204-be5a-8a7adfc2c655/ENCFF534FLA.bam ENCODE3 hg19 archived ENCFF420OBI bam bam alignments hg19 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF584YEG/, /files/ENCFF452ROQ/, /files/ENCFF807MUK/, /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF527WMD/ 5546731190 ENCODE Processing Pipeline d63754154b82bbdca3d7a36d06262a1c https://www.encodeproject.org/files/ENCFF420OBI/@@download/ENCFF420OBI.bam released s3://encode-public/2017/01/10/7cd1bec8-f0e4-4677-85fc-cdc2407582f9/ENCFF420OBI.bam ENCODE3 hg19 archived ENCFF832PWH bam bam alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF584YEG/, /files/ENCFF452ROQ/, /files/ENCFF643CGH/, /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF527WMD/ 5555140639 ENCODE Processing Pipeline 0461e33a355cb3d87e1494f0dbe24286 https://www.encodeproject.org/files/ENCFF832PWH/@@download/ENCFF832PWH.bam released s3://encode-public/2017/01/10/492ae289-38e8-42d8-9dbb-5a438ba89d6c/ENCFF832PWH.bam ENCODE3 GRCh38 archived ENCFF527FJQ bam bam unfiltered alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF522PVI/, /files/ENCFF163PYU/, /files/ENCFF639RMG/, /files/ENCFF665BBC/, /files/ENCFF716YLE/, /files/ENCFF830CTU/, /files/ENCFF486LTO/, /files/ENCFF272GOE/ 7385498994 ENCODE Processing Pipeline cc17e9a8b12569ca49aae01b9ce73b8f https://www.encodeproject.org/files/ENCFF527FJQ/@@download/ENCFF527FJQ.bam released s3://encode-public/2020/10/21/61020f59-6972-4c70-93bd-703731514feb/ENCFF527FJQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF839JYR bam bam unfiltered alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF527WMD/, /files/ENCFF584YEG/, /files/ENCFF335TOI/, /files/ENCFF802LTL/, /files/ENCFF110MCL/, /files/ENCFF243MZN/, /files/ENCFF375CUH/, /files/ENCFF452ROQ/, /files/ENCFF274YMK/, /files/ENCFF057DOL/, /files/ENCFF863XGE/ 13690960557 ENCODE Processing Pipeline d1cb05537fdca6c5969a1dad7344a364 https://www.encodeproject.org/files/ENCFF839JYR/@@download/ENCFF839JYR.bam released s3://encode-public/2020/10/21/dce7e4cf-9a37-422b-aa97-3c7430f469d3/ENCFF839JYR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF239HKY bam bam alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF522PVI/, /files/ENCFF163PYU/, /files/ENCFF639RMG/, /files/ENCFF665BBC/, /files/ENCFF716YLE/, /files/ENCFF830CTU/, /files/ENCFF486LTO/, /files/ENCFF272GOE/ 6227978212 ENCODE Processing Pipeline 21b3c910044e5c5e206624a65f211d6b https://www.encodeproject.org/files/ENCFF239HKY/@@download/ENCFF239HKY.bam released s3://encode-public/2020/10/21/ebe3987b-9407-4d5d-95dd-8d5d8546736c/ENCFF239HKY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF913NTR bam bam alignments GRCh38 ENCSR011GWK Control ChIP-seq /human-donors/ENCDO647UHQ/ EFO:0002847 PC-9 cell line Homo sapiens DNA 2016-05-06 ENCODE 200-600 2 2_1 76 /files/ENCFF527WMD/, /files/ENCFF584YEG/, /files/ENCFF335TOI/, /files/ENCFF802LTL/, /files/ENCFF110MCL/, /files/ENCFF243MZN/, /files/ENCFF375CUH/, /files/ENCFF452ROQ/, /files/ENCFF274YMK/, /files/ENCFF057DOL/, /files/ENCFF863XGE/ 8424151204 ENCODE Processing Pipeline f1511c3db0a6c9c85192265fd5e32a6d https://www.encodeproject.org/files/ENCFF913NTR/@@download/ENCFF913NTR.bam released s3://encode-public/2020/10/21/4ab0a430-7b70-48e2-a2a8-50668e2d9e4e/ENCFF913NTR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF641UTU bam bam redacted unfiltered alignments hg19 ENCSR212TNS Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000899 T-helper 17 cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF575KLP/ 379158357 ENCODE Processing Pipeline 436b8bc12f04a72e640f742e03aa0698 https://www.encodeproject.org/files/ENCFF641UTU/@@download/ENCFF641UTU.bam released s3://encode-public/2018/01/24/5b775360-3a93-434a-989c-0c79e52046b0/ENCFF641UTU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF984MNY bam bam redacted alignments hg19 ENCSR212TNS Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000899 T-helper 17 cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF575KLP/ 133295534 ENCODE Processing Pipeline 88deaf0d649a5eac183220a9a6bfddfe https://www.encodeproject.org/files/ENCFF984MNY/@@download/ENCFF984MNY.bam released s3://encode-public/2018/01/24/57cd9f55-d295-4000-a1a6-297772614da9/ENCFF984MNY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF422VIU bam bam redacted alignments GRCh38 ENCSR212TNS Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000899 T-helper 17 cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF575KLP/ 133250446 ENCODE Processing Pipeline a1005b0637b865e725ac413f2619516d https://www.encodeproject.org/files/ENCFF422VIU/@@download/ENCFF422VIU.bam released s3://encode-public/2018/01/24/4b32c0b9-3733-4bd9-977a-85311f8b52b2/ENCFF422VIU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF761WXE bam bam redacted unfiltered alignments GRCh38 ENCSR212TNS Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000899 T-helper 17 cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF575KLP/ 382785359 ENCODE Processing Pipeline c68bfbf4f9559a10ea0b9b9763535a71 https://www.encodeproject.org/files/ENCFF761WXE/@@download/ENCFF761WXE.bam released s3://encode-public/2018/01/24/d4ac79f4-0ecc-4bde-b252-b060772e4008/ENCFF761WXE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF767QLG bam bam redacted alignments GRCh38 ENCSR212TNS Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000899 T-helper 17 cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF575KLP/, /files/ENCFF110MCL/ 412901945 ENCODE Processing Pipeline 549a4de22d13522405452d445f9209f5 https://www.encodeproject.org/files/ENCFF767QLG/@@download/ENCFF767QLG.bam released s3://encode-public/2021/01/27/f05e9804-71b0-4fec-bd96-64b0bda47c29/ENCFF767QLG.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF000PVL bam bam alignments hg19 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PVT/ 740522628 Richard Myers, HAIB d47d49c4436aa3a51cca9f35fbe1854f https://www.encodeproject.org/files/ENCFF000PVL/@@download/ENCFF000PVL.bam archived s3://encode-public/2012/01/23/089fd6bd-fc33-4fa2-b501-450e6cd4b21c/ENCFF000PVL.bam Lab custom hg19 archived low read depth, low read length ENCFF000PVM bigWig bigWig raw signal hg19 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 748813 Richard Myers, HAIB 6d8fa59dc26e44a1d8b273fd7c4461ed https://www.encodeproject.org/files/ENCFF000PVM/@@download/ENCFF000PVM.bigWig archived s3://encode-public/2012/01/23/16f2816b-56e4-474f-807f-b408a13172bd/ENCFF000PVM.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000PVT fastq fastq reads ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 686301269 Richard Myers, HAIB 64e8d3b356e3fcbf7b6e20a71f26d4fe https://www.encodeproject.org/files/ENCFF000PVT/@@download/ENCFF000PVT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/512573e2-ae05-495f-b5c1-520194e41159/ENCFF000PVT.fastq.gz low read depth, low read length ENCFF062BXU bam bam unfiltered alignments hg19 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PVT/, /files/ENCFF807MUK/ 913371383 ENCODE Processing Pipeline 6065938759398c13fbceae99dfc00524 https://www.encodeproject.org/files/ENCFF062BXU/@@download/ENCFF062BXU.bam released s3://encode-public/2017/01/31/3d822495-749b-4e10-bab1-0cf222b1fb50/ENCFF062BXU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF234MAA bam bam alignments hg19 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PVT/, /files/ENCFF807MUK/ 601385156 ENCODE Processing Pipeline 908ab347d2ed554e998a782372b6e2c6 https://www.encodeproject.org/files/ENCFF234MAA/@@download/ENCFF234MAA.bam released s3://encode-public/2017/01/31/7e0853fd-afd7-441a-8420-bc7b8bb2da94/ENCFF234MAA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF943DFZ bam bam unfiltered alignments GRCh38 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PVT/, /files/ENCFF643CGH/ 915377561 ENCODE Processing Pipeline de2c339acec5a6330030439b4f86936d https://www.encodeproject.org/files/ENCFF943DFZ/@@download/ENCFF943DFZ.bam released s3://encode-public/2017/06/16/75853e20-ebc1-484d-be5a-93e6e3f4cbab/ENCFF943DFZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF166HHP bam bam alignments GRCh38 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000PVT/, /files/ENCFF643CGH/ 601244818 ENCODE Processing Pipeline a1b6f71db8cac54591b80ffb2c0944fe https://www.encodeproject.org/files/ENCFF166HHP/@@download/ENCFF166HHP.bam released s3://encode-public/2017/06/16/40e34a32-4309-4b5b-a943-706f9b23b1f4/ENCFF166HHP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF524AMC bam bam unfiltered alignments GRCh38 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000PVT/ 899735349 ENCODE Processing Pipeline 5b46b33708c67ec4cb846175ca74e312 https://www.encodeproject.org/files/ENCFF524AMC/@@download/ENCFF524AMC.bam released s3://encode-public/2020/10/28/62bb693d-1857-47e1-92b3-99ed189d31ec/ENCFF524AMC.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF088BAR bam bam alignments GRCh38 ENCSR000BOB Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000PVT/ 658097917 ENCODE Processing Pipeline 521806a2e6a8323baf354404996a402e https://www.encodeproject.org/files/ENCFF088BAR/@@download/ENCFF088BAR.bam released s3://encode-public/2020/10/28/0fa8fe09-0442-4ace-94de-b1264599bc99/ENCFF088BAR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001IFA bigWig bigWig signal mm9 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 /files/ENCFF001IEX/ 89780745 Barbara Wold, Caltech 3001478b347637f5d62b9e40d073617c https://www.encodeproject.org/files/ENCFF001IFA/@@download/ENCFF001IFA.bigWig archived s3://encode-public/2011/08/11/e21f52d0-ad1f-42fa-89de-c4fa29e2bcd8/ENCFF001IFA.bigWig Lab custom mm9 archived low read depth ENCFF001IFB bigWig bigWig signal mm9 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 2 2_1 128343904 Barbara Wold, Caltech cc6884771c7de79555546536f0e84ece https://www.encodeproject.org/files/ENCFF001IFB/@@download/ENCFF001IFB.bigWig archived s3://encode-public/2011/08/11/30343f7b-8eb5-4d0f-bbcc-2ab8535c4d38/ENCFF001IFB.bigWig Lab custom mm9 archived low read depth ENCFF001IFC fastq fastq reads ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 2 2_1 50 single-ended 1197296148 Barbara Wold, Caltech 0d84929e5140f7b4c09727c2c2c41589 https://www.encodeproject.org/files/ENCFF001IFC/@@download/ENCFF001IFC.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/8c6f54c9-c9d7-46bf-83b1-c68d5bcf7631/ENCFF001IFC.fastq.gz low read depth ENCFF001IFD fastq fastq reads ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 50 single-ended 848477872 Barbara Wold, Caltech 79cab86a85e223053f9d02ec420c009c https://www.encodeproject.org/files/ENCFF001IFD/@@download/ENCFF001IFD.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/684e4ddc-83df-4d2e-b231-210994a94c57/ENCFF001IFD.fastq.gz low read depth ENCFF001IFE bigWig bigWig signal mm9 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 3 3_1 83490767 Barbara Wold, Caltech f9f74e100d8054bbf501b695a0d397db https://www.encodeproject.org/files/ENCFF001IFE/@@download/ENCFF001IFE.bigWig archived s3://encode-public/2011/08/11/df6e128c-fd0c-4b6b-948a-5217cdadfeac/ENCFF001IFE.bigWig Lab custom mm9 archived low read depth ENCFF001IFI fastq fastq reads ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 3 3_1 50 single-ended 769845764 Barbara Wold, Caltech 24ecf87e9a5635a454e8b75951d54691 https://www.encodeproject.org/files/ENCFF001IFI/@@download/ENCFF001IFI.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/d46b2fb7-577c-4849-a64d-c072cd711e4e/ENCFF001IFI.fastq.gz low read depth ENCFF001IEX bam bam alignments mm9 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 50 /files/ENCFF001IFD/ 899487607 Barbara Wold, Caltech 94f7681c9cebc9e83db062dca0d8cc5b https://www.encodeproject.org/files/ENCFF001IEX/@@download/ENCFF001IEX.bam archived s3://encode-public/2011/08/11/8dfbf187-fac5-438c-9608-79a525d42bcd/ENCFF001IEX.bam Lab custom mm9 archived low read depth ENCFF848IXH bam bam unfiltered alignments mm10-minimal ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 50 /files/ENCFF001IFD/, /files/ENCFF806TVZ/ 955241592 ENCODE Processing Pipeline fdbbb0e732a50417bdb31429333768b3 https://www.encodeproject.org/files/ENCFF848IXH/@@download/ENCFF848IXH.bam archived s3://encode-public/2015/11/18/d25bb633-a2b4-4f54-a7d7-37de3ad4cbf1/ENCFF848IXH.bam ENCODE3 mm10-minimal archived low read depth ENCFF735RCE bam bam alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 3 3_1 50 /files/ENCFF018NEO/, /files/ENCFF001IFI/ 621623211 ENCODE Processing Pipeline ebea59c53b106e731fd1d7c9fd85a565 https://www.encodeproject.org/files/ENCFF735RCE/@@download/ENCFF735RCE.bam released s3://encode-public/2016/04/28/74f9b736-1a6f-41d6-8c92-bd1e385f59c2/ENCFF735RCE.bam ENCODE3 mm10 archived low read depth ENCFF266PHH bam bam alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF001IFC/ 955557073 ENCODE Processing Pipeline 5b8eecf55eec5450c7c00e258969be29 https://www.encodeproject.org/files/ENCFF266PHH/@@download/ENCFF266PHH.bam released s3://encode-public/2016/04/28/4922dc92-7f05-48c3-a331-ac86bf0402dd/ENCFF266PHH.bam ENCODE3 mm10 archived low read depth ENCFF875IDP bam bam alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF001IFD/ 691603532 ENCODE Processing Pipeline a47aaeb77ac8f393ca8fcba9628ddab8 https://www.encodeproject.org/files/ENCFF875IDP/@@download/ENCFF875IDP.bam released s3://encode-public/2016/04/28/8b7fe99d-ecc9-4a99-ab82-c699d7456c78/ENCFF875IDP.bam ENCODE3 mm10 archived low read depth ENCFF337TOR bam bam unfiltered alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 3 3_1 50 /files/ENCFF018NEO/, /files/ENCFF001IFI/ 867221380 ENCODE Processing Pipeline 923879acc9422e9c338e601a3c6c882e https://www.encodeproject.org/files/ENCFF337TOR/@@download/ENCFF337TOR.bam released s3://encode-public/2016/07/06/89f7d635-b1c3-49e8-b1de-880c3c2c141b/ENCFF337TOR.bam ENCODE3 mm10 archived low read depth ENCFF568LSF bam bam unfiltered alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF001IFC/ 1335228482 ENCODE Processing Pipeline 7bd840691fd281b16fc499b9627c6e0f https://www.encodeproject.org/files/ENCFF568LSF/@@download/ENCFF568LSF.bam released s3://encode-public/2016/07/06/a769acd1-bc65-44b7-a450-4d7bae5408c8/ENCFF568LSF.bam ENCODE3 mm10 archived low read depth ENCFF315IFV bam bam unfiltered alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF001IFD/ 956470962 ENCODE Processing Pipeline 6e09df6b2b6bfa018883a7c3154c6bc9 https://www.encodeproject.org/files/ENCFF315IFV/@@download/ENCFF315IFV.bam released s3://encode-public/2016/07/06/59ce9a1e-0029-4267-8aee-6ef79dd99c02/ENCFF315IFV.bam ENCODE3 mm10 archived low read depth ENCFF519KQG bam bam alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 50 /files/ENCFF001IFD/, /files/ENCFF309GLL/ 688850006 ENCODE Processing Pipeline 4d3882d9efeb7cb2c83f48b465115493 https://www.encodeproject.org/files/ENCFF519KQG/@@download/ENCFF519KQG.bam released s3://encode-public/2020/10/12/87a3e7a9-9133-4ce6-a0bf-ad3c8ae22c8d/ENCFF519KQG.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF305VZW bam bam unfiltered alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 3 3_1 50 /files/ENCFF001IFI/, /files/ENCFF309GLL/ 867618886 ENCODE Processing Pipeline f9c8ce957b90d40ce80ee3f373da1459 https://www.encodeproject.org/files/ENCFF305VZW/@@download/ENCFF305VZW.bam released s3://encode-public/2020/10/12/2c087aba-3787-4695-8c51-39d5c81891f6/ENCFF305VZW.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF447TFN bam bam alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 2 2_1 50 /files/ENCFF001IFC/, /files/ENCFF309GLL/ 951807775 ENCODE Processing Pipeline 9a515eadaffdf362d58108819ab79f7e https://www.encodeproject.org/files/ENCFF447TFN/@@download/ENCFF447TFN.bam released s3://encode-public/2020/10/12/a3375ce3-a3de-4991-be1b-3dafa3a04e6e/ENCFF447TFN.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF190SDW bam bam unfiltered alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 50 /files/ENCFF001IFD/, /files/ENCFF309GLL/ 956212467 ENCODE Processing Pipeline c6c5892c0b99bd9529f1d5080cf4f236 https://www.encodeproject.org/files/ENCFF190SDW/@@download/ENCFF190SDW.bam released s3://encode-public/2020/10/12/f11c4522-2924-4ed5-9978-1177d1afd438/ENCFF190SDW.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF014HXN bam bam unfiltered alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 2 2_1 50 /files/ENCFF001IFC/, /files/ENCFF309GLL/ 1335395345 ENCODE Processing Pipeline 851b8abeba5aef4c6faa7149648c9462 https://www.encodeproject.org/files/ENCFF014HXN/@@download/ENCFF014HXN.bam released s3://encode-public/2020/10/12/601bd587-41e6-4422-8293-fdb83694afe5/ENCFF014HXN.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF909WGM bam bam alignments mm10 ENCSR000AJN Control ChIP-seq /mouse-donors/ENCDO321TZV/ EFO:0001098 C2C12 cell line Mus musculus DNA 2011-11-28 ENCODE see document 3 3_1 50 /files/ENCFF001IFI/, /files/ENCFF309GLL/ 620003004 ENCODE Processing Pipeline 6570e52d633755d926a3232a0bf1dabb https://www.encodeproject.org/files/ENCFF909WGM/@@download/ENCFF909WGM.bam released s3://encode-public/2020/10/12/830baf7d-5e57-4d33-b56d-7ef663eb727c/ENCFF909WGM.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF005RQW fastq fastq reads ENCSR251RZP Control ChIP-seq /worm-donors/ENCDO114PVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178933/'], '@type': ['Target', 'Item'], 'name': 'nhr-47-celegans', 'label': 'nhr-47', '@id': '/targets/nhr-47-celegans/', 'title': 'nhr-47 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3c89fb63-4caa-48ac-9d43-05a10d67a09a', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 592032594 Kevin White, UChicago 6fccc50e88b1070427a6833647bf66b1 https://www.encodeproject.org/files/ENCFF005RQW/@@download/ENCFF005RQW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/a6a54161-e1bd-4451-9f62-986e1b029cb0/ENCFF005RQW.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF390RHU bam bam alignments ce10 ENCSR251RZP Control ChIP-seq /worm-donors/ENCDO114PVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178933/'], '@type': ['Target', 'Item'], 'name': 'nhr-47-celegans', 'label': 'nhr-47', '@id': '/targets/nhr-47-celegans/', 'title': 'nhr-47 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3c89fb63-4caa-48ac-9d43-05a10d67a09a', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF005RQW/ 859587822 Kevin White, UChicago ddd25726927045104ff7b56fac208291 https://www.encodeproject.org/files/ENCFF390RHU/@@download/ENCFF390RHU.bam released s3://encode-public/2015/08/07/c439b999-c21a-4e6b-a24f-7622a823ae6a/ENCFF390RHU.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF032QBO bigWig bigWig read-depth normalized signal ce10 ENCSR251RZP Control ChIP-seq /worm-donors/ENCDO114PVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178933/'], '@type': ['Target', 'Item'], 'name': 'nhr-47-celegans', 'label': 'nhr-47', '@id': '/targets/nhr-47-celegans/', 'title': 'nhr-47 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3c89fb63-4caa-48ac-9d43-05a10d67a09a', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF390RHU/ 9967708 Kevin White, UChicago a97600ff3038052bef7ea9b1b47b8770 https://www.encodeproject.org/files/ENCFF032QBO/@@download/ENCFF032QBO.bigWig released s3://encode-public/2015/10/02/7983a59b-b10a-4e5a-96bb-c9b125ed156b/ENCFF032QBO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF128GUT bigWig bigWig signal of unique reads ce10 ENCSR251RZP Control ChIP-seq /worm-donors/ENCDO114PVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178933/'], '@type': ['Target', 'Item'], 'name': 'nhr-47-celegans', 'label': 'nhr-47', '@id': '/targets/nhr-47-celegans/', 'title': 'nhr-47 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3c89fb63-4caa-48ac-9d43-05a10d67a09a', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF390RHU/ 9968178 Kevin White, UChicago 4848488abd181b44007f000ade026b12 https://www.encodeproject.org/files/ENCFF128GUT/@@download/ENCFF128GUT.bigWig released s3://encode-public/2015/10/02/8bb25bfb-b62a-4eab-b714-059ddcc12104/ENCFF128GUT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF209ELF bam bam alignments ce11 ENCSR251RZP Control ChIP-seq /worm-donors/ENCDO114PVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178933/'], '@type': ['Target', 'Item'], 'name': 'nhr-47-celegans', 'label': 'nhr-47', '@id': '/targets/nhr-47-celegans/', 'title': 'nhr-47 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3c89fb63-4caa-48ac-9d43-05a10d67a09a', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF209ELF/ 9965164 Kevin White, UChicago 5aae644f3ee24efb948dc32fccf400a0 https://www.encodeproject.org/files/ENCFF972STL/@@download/ENCFF972STL.bigWig released s3://encode-public/2016/02/03/096e2420-2d61-48d3-a4d6-7cb5ad7b401c/ENCFF972STL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF126OGY bigWig bigWig read-depth normalized signal ce11 ENCSR251RZP Control ChIP-seq /worm-donors/ENCDO114PVH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178933/'], '@type': ['Target', 'Item'], 'name': 'nhr-47-celegans', 'label': 'nhr-47', '@id': '/targets/nhr-47-celegans/', 'title': 'nhr-47 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3c89fb63-4caa-48ac-9d43-05a10d67a09a', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF209ELF/ 9961107 Kevin White, UChicago 0319ced6511f7d2aeaea65094c73f87f https://www.encodeproject.org/files/ENCFF126OGY/@@download/ENCFF126OGY.bigWig released s3://encode-public/2016/02/03/ce0660d0-3567-478a-9fc0-43561c40eb7e/ENCFF126OGY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF139MZH fastq fastq reads ENCSR041LTG Control ChIP-seq /worm-donors/ENCDO470ZGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174255/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.1-celegans', 'label': 'snpc-1.1', '@id': '/targets/snpc-1.1-celegans/', 'title': 'snpc-1.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '56995048-4070-40fe-a8c5-82edddfa9329', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 67318834 Kevin White, UChicago f1ce885bf2640ab0f9bf5468dcc81d83 https://www.encodeproject.org/files/ENCFF139MZH/@@download/ENCFF139MZH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF761DEA/ released s3://encode-public/2015/07/30/3909287c-530f-4e51-ac35-e85b0fa07ed4/ENCFF139MZH.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF185ZFZ bam bam alignments ce10 ENCSR041LTG Control ChIP-seq /worm-donors/ENCDO470ZGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174255/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.1-celegans', 'label': 'snpc-1.1', '@id': '/targets/snpc-1.1-celegans/', 'title': 'snpc-1.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '56995048-4070-40fe-a8c5-82edddfa9329', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF139MZH/ 97517392 Kevin White, UChicago 749b179c42db2e548d88774333e666b5 https://www.encodeproject.org/files/ENCFF185ZFZ/@@download/ENCFF185ZFZ.bam released s3://encode-public/2015/08/19/38a6a8c4-cd70-4d9f-af91-02b277d3da04/ENCFF185ZFZ.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF623HMH bigWig bigWig read-depth normalized signal ce10 ENCSR041LTG Control ChIP-seq /worm-donors/ENCDO470ZGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174255/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.1-celegans', 'label': 'snpc-1.1', '@id': '/targets/snpc-1.1-celegans/', 'title': 'snpc-1.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '56995048-4070-40fe-a8c5-82edddfa9329', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF185ZFZ/ 9992884 Kevin White, UChicago 379b07d9b6729c5ce8262684dd4718a6 https://www.encodeproject.org/files/ENCFF623HMH/@@download/ENCFF623HMH.bigWig released s3://encode-public/2015/10/02/25d76c09-465f-4679-9de5-727a087d783d/ENCFF623HMH.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF487RPK bigWig bigWig signal of unique reads ce10 ENCSR041LTG Control ChIP-seq /worm-donors/ENCDO470ZGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174255/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.1-celegans', 'label': 'snpc-1.1', '@id': '/targets/snpc-1.1-celegans/', 'title': 'snpc-1.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '56995048-4070-40fe-a8c5-82edddfa9329', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF185ZFZ/ 10035552 Kevin White, UChicago fb9fa66e2ed389ec66032a1e172842f4 https://www.encodeproject.org/files/ENCFF487RPK/@@download/ENCFF487RPK.bigWig released s3://encode-public/2015/10/02/37855dc0-90e5-4540-859e-493d0b0c3bb8/ENCFF487RPK.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF136BZW bam bam alignments ce11 ENCSR041LTG Control ChIP-seq /worm-donors/ENCDO470ZGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174255/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.1-celegans', 'label': 'snpc-1.1', '@id': '/targets/snpc-1.1-celegans/', 'title': 'snpc-1.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '56995048-4070-40fe-a8c5-82edddfa9329', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF139MZH/ 97644673 Kevin White, UChicago f576553ff9052aa5208dcb1c3e8fefd7 https://www.encodeproject.org/files/ENCFF136BZW/@@download/ENCFF136BZW.bam released s3://encode-public/2016/01/16/4a10fdf1-8137-4c4c-a3c2-5a15c4ef6839/ENCFF136BZW.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF372LWN bigWig bigWig signal of unique reads ce11 ENCSR041LTG Control ChIP-seq /worm-donors/ENCDO470ZGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174255/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.1-celegans', 'label': 'snpc-1.1', '@id': '/targets/snpc-1.1-celegans/', 'title': 'snpc-1.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '56995048-4070-40fe-a8c5-82edddfa9329', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF136BZW/ 10039460 Kevin White, UChicago d07f47903ea43048a220da98fa913a44 https://www.encodeproject.org/files/ENCFF372LWN/@@download/ENCFF372LWN.bigWig released s3://encode-public/2016/02/03/14833ae5-1e04-4ac6-9be0-6e8497085c5c/ENCFF372LWN.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF535PTD bigWig bigWig read-depth normalized signal ce11 ENCSR041LTG Control ChIP-seq /worm-donors/ENCDO470ZGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174255/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.1-celegans', 'label': 'snpc-1.1', '@id': '/targets/snpc-1.1-celegans/', 'title': 'snpc-1.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '56995048-4070-40fe-a8c5-82edddfa9329', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF136BZW/ 9996233 Kevin White, UChicago e8c2997a6bb60925830744f5c03aa1e2 https://www.encodeproject.org/files/ENCFF535PTD/@@download/ENCFF535PTD.bigWig released s3://encode-public/2016/02/03/8a87e6f1-02e0-4fcf-aff1-84390ea3bacd/ENCFF535PTD.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF000RMT bam bam alignments hg19 ENCSR000DKK Control ChIP-seq CLO:0034140 AG08470 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 36 780830382 Vishwanath Iyer, UTA 0508b60fa6b9d866c13d0ed55812d4e6 https://www.encodeproject.org/files/ENCFF000RMT/@@download/ENCFF000RMT.bam archived s3://encode-public/2012/07/26/712491fd-afc4-45ce-afe1-33ad3e616d4a/ENCFF000RMT.bam Lab custom hg19 released ENCFF000RMU bigWig bigWig signal hg19 ENCSR000DKK Control ChIP-seq CLO:0034140 AG08470 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 4589180131 Vishwanath Iyer, UTA eb732363b7174de8db9770eebcdff881 https://www.encodeproject.org/files/ENCFF000RMU/@@download/ENCFF000RMU.bigWig archived s3://encode-public/2012/07/26/1aed3deb-ab9e-4277-ae2e-3662dbc77119/ENCFF000RMU.bigWig Lab custom hg19 released ENCFF011TMB tagAlign tagAlign alignments hg19 ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF693RXC/ 231059659 Anshul Kundaje, Stanford 54c86db6c930b2e490584a80a0362cbc https://www.encodeproject.org/files/ENCFF011TMB/@@download/ENCFF011TMB.tagAlign.gz archived s3://encode-public/2016/05/02/45d53347-5022-4b52-b1b8-6d806d73146e/ENCFF011TMB.tagAlign.gz Lab custom hg19 archived low read length ENCFF693RXC fastq fastq reads ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2013652840 Zhiping Weng, UMass aec3879eb82351256d8b95f62f806a62 SRA:SRR1067107 https://www.encodeproject.org/files/ENCFF693RXC/@@download/ENCFF693RXC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/21/c3715b23-624f-4b7e-b24d-64b0ef05ae7c/ENCFF693RXC.fastq.gz low read length ENCFF473KBM bam bam unfiltered alignments GRCh38 ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF693RXC/, /files/ENCFF110MCL/ 2267607289 ENCODE Processing Pipeline e63a2cb1a973d3af6ae02107f87e2d57 https://www.encodeproject.org/files/ENCFF473KBM/@@download/ENCFF473KBM.bam released s3://encode-public/2020/10/08/76d90a55-8787-440c-b4c4-0366d0ce384c/ENCFF473KBM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF507EJS bam bam alignments GRCh38 ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF693RXC/, /files/ENCFF110MCL/ 1682107936 ENCODE Processing Pipeline ad29f6ed89c90d5185ce292ab80b598a https://www.encodeproject.org/files/ENCFF507EJS/@@download/ENCFF507EJS.bam released s3://encode-public/2020/10/08/df01e310-0e86-475c-8f31-db39c870ec99/ENCFF507EJS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF695MDV bam bam unfiltered alignments hg19 ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF693RXC/, /files/ENCFF807MUK/ 2304350631 ENCODE Processing Pipeline d6e07d83306860efb9c421511e20785b https://www.encodeproject.org/files/ENCFF695MDV/@@download/ENCFF695MDV.bam released s3://encode-public/2016/12/19/211f30b4-b2a8-4d5e-8c98-5a250934f807/ENCFF695MDV.bam ENCODE3 hg19 archived low read length ENCFF034CAM bam bam unfiltered alignments GRCh38 ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF693RXC/, /files/ENCFF643CGH/ 2318816869 ENCODE Processing Pipeline ae64218e7a0fbdc3b442463bbe829a40 https://www.encodeproject.org/files/ENCFF034CAM/@@download/ENCFF034CAM.bam released s3://encode-public/2016/12/19/2b9d6289-bbd3-48a6-9999-b9842256e399/ENCFF034CAM.bam ENCODE3 GRCh38 archived low read length ENCFF773BHM bam bam alignments hg19 ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF693RXC/, /files/ENCFF807MUK/ 1558932195 ENCODE Processing Pipeline d0f8cc475b0553e853e9ac0bce93c228 https://www.encodeproject.org/files/ENCFF773BHM/@@download/ENCFF773BHM.bam released s3://encode-public/2016/12/19/20abc796-8891-4fa6-87ba-f8758e94f760/ENCFF773BHM.bam ENCODE3 hg19 archived low read length ENCFF626EZI bam bam alignments GRCh38 ENCSR849NEM Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF693RXC/, /files/ENCFF643CGH/ 1558549097 ENCODE Processing Pipeline 0633891766798a8c943359e2811955b4 https://www.encodeproject.org/files/ENCFF626EZI/@@download/ENCFF626EZI.bam released s3://encode-public/2016/12/19/3f42af51-af1b-4072-909c-9bf7062dfbb0/ENCFF626EZI.bam ENCODE3 GRCh38 archived low read length ENCFF866WQR tagAlign tagAlign alignments hg19 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF234PPL/, /files/ENCFF808AHU/, /files/ENCFF590DYT/, /files/ENCFF191LCN/ 233137065 Anshul Kundaje, Stanford e6b9c6fda33795048cec706ee27b2ed6 https://www.encodeproject.org/files/ENCFF866WQR/@@download/ENCFF866WQR.tagAlign.gz archived s3://encode-public/2016/03/30/2dc531b8-2bf6-4521-a06f-24a4e08009be/ENCFF866WQR.tagAlign.gz Lab custom hg19 archived low read length ENCFF191LCN fastq fastq reads ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 449539369 Zhiping Weng, UMass 05922099cfb623a70e30c0b595480e5d SRA:SRR1067139 https://www.encodeproject.org/files/ENCFF191LCN/@@download/ENCFF191LCN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/9b10f334-b76d-45ca-afca-01bfaebd765d/ENCFF191LCN.fastq.gz low read length ENCFF590DYT fastq fastq reads ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 445415768 Zhiping Weng, UMass 00affe6430f72bdf5f9ff17ecb54dd6c SRA:SRR1067310 https://www.encodeproject.org/files/ENCFF590DYT/@@download/ENCFF590DYT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/6f78edba-75ee-4c41-bfcf-0d3abb7ecc27/ENCFF590DYT.fastq.gz low read length ENCFF808AHU fastq fastq reads ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 442305641 Zhiping Weng, UMass f88a7d54653fef4981fa0b3868636d41 SRA:SRR1067277 https://www.encodeproject.org/files/ENCFF808AHU/@@download/ENCFF808AHU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/ae5499f6-3dd9-4f49-acd7-ab5eef7980d5/ENCFF808AHU.fastq.gz low read length ENCFF234PPL fastq fastq reads ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 446402504 Zhiping Weng, UMass a67218f0afb30206a406300872aad2e9 SRA:SRR1067131 https://www.encodeproject.org/files/ENCFF234PPL/@@download/ENCFF234PPL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/af10de6a-6a4f-4771-bbcb-e7b91d2b7843/ENCFF234PPL.fastq.gz low read length ENCFF238EXQ bam bam unfiltered alignments hg19 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF191LCN/, /files/ENCFF234PPL/, /files/ENCFF808AHU/, /files/ENCFF590DYT/ 2064899193 ENCODE Processing Pipeline e067268c21a3a828e69afa7de6db987b https://www.encodeproject.org/files/ENCFF238EXQ/@@download/ENCFF238EXQ.bam released s3://encode-public/2016/12/19/e0c9bf85-b6ea-49c6-8d87-a47a42f193df/ENCFF238EXQ.bam ENCODE3 hg19 archived low read length ENCFF727ZPX bam bam unfiltered alignments GRCh38 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF191LCN/, /files/ENCFF234PPL/, /files/ENCFF808AHU/, /files/ENCFF643CGH/, /files/ENCFF590DYT/ 2082812401 ENCODE Processing Pipeline 41cc3a6da5195aa005ffa8cacd294601 https://www.encodeproject.org/files/ENCFF727ZPX/@@download/ENCFF727ZPX.bam released s3://encode-public/2016/12/19/fc4626b5-37ba-48dc-9268-73dbdd1357f6/ENCFF727ZPX.bam ENCODE3 GRCh38 archived low read length ENCFF912FFY bam bam alignments hg19 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF191LCN/, /files/ENCFF234PPL/, /files/ENCFF808AHU/, /files/ENCFF590DYT/ 1502283690 ENCODE Processing Pipeline a42951616bd5b3c86553140224fc5eed https://www.encodeproject.org/files/ENCFF912FFY/@@download/ENCFF912FFY.bam released s3://encode-public/2016/12/19/b20b9156-4d3a-4838-b14d-370dd11d1bec/ENCFF912FFY.bam ENCODE3 hg19 archived low read length ENCFF516TWC bam bam alignments GRCh38 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF191LCN/, /files/ENCFF234PPL/, /files/ENCFF808AHU/, /files/ENCFF643CGH/, /files/ENCFF590DYT/ 1502128147 ENCODE Processing Pipeline b46132f7a08e069e5e787d43029ebc89 https://www.encodeproject.org/files/ENCFF516TWC/@@download/ENCFF516TWC.bam released s3://encode-public/2016/12/19/46f0ef09-25ce-4093-ae74-21cd7a558b14/ENCFF516TWC.bam ENCODE3 GRCh38 archived low read length ENCFF650EZR tagAlign tagAlign alignments hg19 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF196PAE/, /files/ENCFF180MSA/ 213793491 Anshul Kundaje, Stanford 688faf008b780b147bbe6839aa7dac4e https://www.encodeproject.org/files/ENCFF650EZR/@@download/ENCFF650EZR.tagAlign.gz archived s3://encode-public/2016/03/30/bdd43faa-f519-4f1d-ba7f-967e47541f68/ENCFF650EZR.tagAlign.gz Lab custom hg19 archived low read length ENCFF560NOE bam bam redacted alignments hg19 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF196PAE/, /files/ENCFF807MUK/, /files/ENCFF180MSA/ 441074669 ENCODE Processing Pipeline 469d091c0c840bb3c76e0b31ef75e9a2 https://www.encodeproject.org/files/ENCFF560NOE/@@download/ENCFF560NOE.bam released s3://encode-public/2018/01/19/6e6bca11-00e1-44f9-a0f1-5f6cef9ca56c/ENCFF560NOE.bam ENCODE3 hg19 archived low read length ENCFF543QDG bam bam redacted unfiltered alignments GRCh38 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF196PAE/, /files/ENCFF643CGH/, /files/ENCFF180MSA/ 624873103 ENCODE Processing Pipeline 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/files/ENCFF196PAE/, /files/ENCFF807MUK/, /files/ENCFF180MSA/ 618811123 ENCODE Processing Pipeline aef6da2cca3b498cba3d2d3b632f43e0 https://www.encodeproject.org/files/ENCFF970FZE/@@download/ENCFF970FZE.bam released s3://encode-public/2018/01/19/88123959-7e59-4011-a575-77540a2dbb38/ENCFF970FZE.bam ENCODE3 hg19 archived low read length ENCFF178GLM bam bam redacted alignments GRCh38 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF191LCN/, /files/ENCFF110MCL/, /files/ENCFF234PPL/, /files/ENCFF808AHU/, /files/ENCFF590DYT/ 1628003954 ENCODE Processing Pipeline 86041182f10614d1ede691a317c0c6ed https://www.encodeproject.org/files/ENCFF178GLM/@@download/ENCFF178GLM.bam released s3://encode-public/2021/01/28/488240e2-4b39-4e43-b9a3-e1a7e332977e/ENCFF178GLM.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF992YJD bam bam redacted alignments GRCh38 ENCSR023HXE Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF196PAE/, /files/ENCFF110MCL/, /files/ENCFF180MSA/ 1424070631 ENCODE Processing Pipeline b0172f43117ebfeb1b0b14ed7884d137 https://www.encodeproject.org/files/ENCFF992YJD/@@download/ENCFF992YJD.bam released s3://encode-public/2021/01/28/7a0e2fac-9d90-4d4a-8d68-fc3da2ac7dae/ENCFF992YJD.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF032UFF fastq fastq reads ENCSR884LDO Control ChIP-seq /worm-donors/ENCDO056OSO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173805/'], '@type': ['Target', 'Item'], 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/worm-donors/ENCDO056OSO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173805/'], '@type': ['Target', 'Item'], 'name': 'hmg-11-celegans', 'label': 'hmg-11', '@id': '/targets/hmg-11-celegans/', 'title': 'hmg-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b9fe32b2-ac7d-4956-9d6e-b73f6ffc2bd7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF935HUD/ 9959233 Kevin White, UChicago 71a2eb45f35ba36519efdc75fe6f4017 https://www.encodeproject.org/files/ENCFF398CRI/@@download/ENCFF398CRI.bigWig released s3://encode-public/2015/10/02/1e83688c-5102-4e9d-8d1f-6f327208fdd7/ENCFF398CRI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF229AYB bigWig bigWig read-depth normalized signal ce10 ENCSR884LDO Control ChIP-seq /worm-donors/ENCDO056OSO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173805/'], '@type': ['Target', 'Item'], 'name': 'hmg-11-celegans', 'label': 'hmg-11', '@id': '/targets/hmg-11-celegans/', 'title': 'hmg-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b9fe32b2-ac7d-4956-9d6e-b73f6ffc2bd7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF935HUD/ 9959562 Kevin White, UChicago d90cc52fc33b05eb7db372be8dbe317f https://www.encodeproject.org/files/ENCFF229AYB/@@download/ENCFF229AYB.bigWig released s3://encode-public/2015/10/02/4599158d-e265-4f82-a13e-a59098ae482a/ENCFF229AYB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF614UBE bam bam alignments ce11 ENCSR884LDO Control ChIP-seq /worm-donors/ENCDO056OSO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173805/'], '@type': ['Target', 'Item'], 'name': 'hmg-11-celegans', 'label': 'hmg-11', '@id': '/targets/hmg-11-celegans/', 'title': 'hmg-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b9fe32b2-ac7d-4956-9d6e-b73f6ffc2bd7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF032UFF/ 255293062 Kevin White, UChicago 68a1190368513c395b83fce91ba01c78 https://www.encodeproject.org/files/ENCFF614UBE/@@download/ENCFF614UBE.bam released s3://encode-public/2016/01/17/3df637e3-c091-454b-aec4-d707d8286a95/ENCFF614UBE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF564RLT bigWig bigWig signal of unique reads ce11 ENCSR884LDO Control ChIP-seq /worm-donors/ENCDO056OSO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173805/'], '@type': ['Target', 'Item'], 'name': 'hmg-11-celegans', 'label': 'hmg-11', '@id': '/targets/hmg-11-celegans/', 'title': 'hmg-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b9fe32b2-ac7d-4956-9d6e-b73f6ffc2bd7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF614UBE/ 9955555 Kevin White, UChicago f016a85a22e13e0116a44006be49f3ff https://www.encodeproject.org/files/ENCFF564RLT/@@download/ENCFF564RLT.bigWig released s3://encode-public/2016/02/03/b9475fc5-384d-44e7-8233-b9a07bcfb01d/ENCFF564RLT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF318YKQ bigWig bigWig read-depth normalized signal ce11 ENCSR884LDO Control ChIP-seq /worm-donors/ENCDO056OSO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173805/'], '@type': ['Target', 'Item'], 'name': 'hmg-11-celegans', 'label': 'hmg-11', '@id': '/targets/hmg-11-celegans/', 'title': 'hmg-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b9fe32b2-ac7d-4956-9d6e-b73f6ffc2bd7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF614UBE/ 9956811 Kevin White, UChicago 1031f915708b6c57b6b2f2b96d56cf77 https://www.encodeproject.org/files/ENCFF318YKQ/@@download/ENCFF318YKQ.bigWig released s3://encode-public/2016/02/03/3d1af256-3373-4c09-9097-2db7ac063638/ENCFF318YKQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF025OUB fastq fastq reads ENCSR972CCK Control ChIP-seq /fly-donors/ENCDO755ZYC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47906/'], '@type': ['Target', 'Item'], 'name': 'Dek-dmelanogaster', 'label': 'Dek', '@id': '/targets/Dek-dmelanogaster/', 'title': 'Dek (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '430038a9-be8d-4295-b774-63757b339c8e', 'status': 'released'} dm3 2R 16845399 16868455 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2130609258 Kevin White, UChicago 343b6d3898851823f69c34714e64699d https://www.encodeproject.org/files/ENCFF025OUB/@@download/ENCFF025OUB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/b314ea7b-0e47-4f8a-821f-dc779ef990d3/ENCFF025OUB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF518WZZ bam bam alignments dm6 ENCSR972CCK Control ChIP-seq /fly-donors/ENCDO755ZYC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47906/'], '@type': ['Target', 'Item'], 'name': 'Dek-dmelanogaster', 'label': 'Dek', '@id': '/targets/Dek-dmelanogaster/', 'title': 'Dek (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '430038a9-be8d-4295-b774-63757b339c8e', 'status': 'released'} dm3 2R 16845399 16868455 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF025OUB/, /files/ENCFF479RCH/ 2905069253 Kevin White, UChicago b3d0c9be65bffd689f412fe2b5180644 https://www.encodeproject.org/files/ENCFF518WZZ/@@download/ENCFF518WZZ.bam released s3://encode-public/2019/04/13/9eb1b6c3-78d8-4887-be19-27a2eb746258/ENCFF518WZZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF018MLG bigWig bigWig signal of unique reads dm6 ENCSR972CCK Control ChIP-seq /fly-donors/ENCDO755ZYC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47906/'], '@type': ['Target', 'Item'], 'name': 'Dek-dmelanogaster', 'label': 'Dek', '@id': '/targets/Dek-dmelanogaster/', 'title': 'Dek (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '430038a9-be8d-4295-b774-63757b339c8e', 'status': 'released'} dm3 2R 16845399 16868455 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF518WZZ/ 17862598 Kevin White, UChicago 319d188059d44ebb86355cbf597e54ff https://www.encodeproject.org/files/ENCFF018MLG/@@download/ENCFF018MLG.bigWig released s3://encode-public/2019/04/16/ff6ab0d8-ac8d-483d-9ff4-04419d96e6f7/ENCFF018MLG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF507KAC bigWig bigWig read-depth normalized signal dm6 ENCSR972CCK Control ChIP-seq /fly-donors/ENCDO755ZYC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47906/'], '@type': ['Target', 'Item'], 'name': 'Dek-dmelanogaster', 'label': 'Dek', '@id': '/targets/Dek-dmelanogaster/', 'title': 'Dek (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '430038a9-be8d-4295-b774-63757b339c8e', 'status': 'released'} dm3 2R 16845399 16868455 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF518WZZ/ 17913760 Kevin White, UChicago 857ed6c2dfc6738bd78ca1d9dbd8748e https://www.encodeproject.org/files/ENCFF507KAC/@@download/ENCFF507KAC.bigWig released s3://encode-public/2019/04/16/ae8125dc-103b-4a9d-a642-83fc29172b69/ENCFF507KAC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF519USP tagAlign tagAlign alignments hg19 ENCSR617MEB Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/SRR1270592/, /files/SRR1270468/, /files/SRR1270454/ 234235504 Anshul Kundaje, Stanford 6913f391e3e04660ba8f08badb287878 https://www.encodeproject.org/files/ENCFF519USP/@@download/ENCFF519USP.tagAlign.gz archived s3://encode-public/2016/03/30/2d834803-5f0f-4ff0-992d-afb4509e8154/ENCFF519USP.tagAlign.gz Lab custom hg19 archived low read length ENCFF268LFU bam bam redacted alignments GRCh38 ENCSR617MEB Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF020WBJ/, /files/ENCFF762NSP/, /files/ENCFF643CGH/, /files/ENCFF918DVV/ 251286052 ENCODE Processing Pipeline ab487bd2dcd3bf2df424c145c4afa81f https://www.encodeproject.org/files/ENCFF268LFU/@@download/ENCFF268LFU.bam released s3://encode-public/2017/10/16/f510dd5c-6cb1-40e9-a1b1-e5e4502b99e0/ENCFF268LFU.bam ENCODE3 GRCh38 archived low read length ENCFF417LFU bam bam redacted unfiltered alignments GRCh38 ENCSR617MEB Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF020WBJ/, /files/ENCFF762NSP/, /files/ENCFF643CGH/, /files/ENCFF918DVV/ 461950150 ENCODE Processing Pipeline 2759cfe2cabaccfb763bfced1b901a0e https://www.encodeproject.org/files/ENCFF417LFU/@@download/ENCFF417LFU.bam released s3://encode-public/2017/10/16/6fac7b58-caab-42b0-8ff6-cf52dc5ab6af/ENCFF417LFU.bam ENCODE3 GRCh38 archived low read length ENCFF687MFN bam bam redacted unfiltered alignments hg19 ENCSR617MEB Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF020WBJ/, /files/ENCFF807MUK/, /files/ENCFF762NSP/, /files/ENCFF918DVV/ 304527316 ENCODE Processing Pipeline 9639c1a7ac9d974108070711e39d9b1d https://www.encodeproject.org/files/ENCFF687MFN/@@download/ENCFF687MFN.bam released s3://encode-public/2018/01/20/ded1b761-c2fe-4b62-906c-fb2143851611/ENCFF687MFN.bam ENCODE3 hg19 archived low read length ENCFF034RKL bam bam redacted alignments hg19 ENCSR617MEB Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF020WBJ/, /files/ENCFF807MUK/, /files/ENCFF762NSP/, /files/ENCFF918DVV/ 201180032 ENCODE Processing Pipeline f4fca31c3841b3ea072d56c8586aeb02 https://www.encodeproject.org/files/ENCFF034RKL/@@download/ENCFF034RKL.bam released s3://encode-public/2018/01/20/ffbd39cb-33de-4bc2-ac11-1e35870c0ec9/ENCFF034RKL.bam ENCODE3 hg19 archived low read length ENCFF009BEY bam bam redacted alignments GRCh38 ENCSR617MEB Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001871 temporal lobe tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF110MCL/, /files/ENCFF277PNL/, /files/ENCFF597VSI/, /files/ENCFF404SZJ/ 1307450465 ENCODE Processing Pipeline 63ec7a40b97dacdb16ca8b34efd992b7 https://www.encodeproject.org/files/ENCFF009BEY/@@download/ENCFF009BEY.bam released s3://encode-public/2021/01/28/2830dc2f-8ad3-4484-be1e-ed3f44d71e6d/ENCFF009BEY.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF196TAE fastq fastq reads ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF270OHP/ 2731761331 Michael Snyder, Stanford 11c4d79d10e577f249b151d567ce0806 SRA:SRR6214082 https://www.encodeproject.org/files/ENCFF196TAE/@@download/ENCFF196TAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/25/4e60a6fe-946f-40f3-ba1b-68673a6e3b98/ENCFF196TAE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF270OHP fastq fastq reads ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF196TAE/ 3156151643 Michael Snyder, Stanford e6dd504fa2a38bbe6c2c4e026eb94842 SRA:SRR6214082 https://www.encodeproject.org/files/ENCFF270OHP/@@download/ENCFF270OHP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/25/89cf12b0-6284-41a6-a73c-1634f11de9cd/ENCFF270OHP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF967HQU bam bam unfiltered alignments GRCh38 ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF270OHP/, /files/ENCFF643CGH/, /files/ENCFF196TAE/ 5401032093 ENCODE Processing Pipeline b85e70be79f81c8becf3d7627cfea501 https://www.encodeproject.org/files/ENCFF967HQU/@@download/ENCFF967HQU.bam released s3://encode-public/2017/01/27/c1b737d7-6fa1-4f6f-a59c-cbe5c013a847/ENCFF967HQU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF820JHF bam bam alignments GRCh38 ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF270OHP/, /files/ENCFF643CGH/, /files/ENCFF196TAE/ 4038395257 ENCODE Processing Pipeline f54b23227115c914ac392f47e2e02a76 https://www.encodeproject.org/files/ENCFF820JHF/@@download/ENCFF820JHF.bam released s3://encode-public/2017/01/27/34ba47c1-9b2c-4291-9b89-acfac4c3d945/ENCFF820JHF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF130MHV bam bam unfiltered alignments hg19 ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF270OHP/, /files/ENCFF807MUK/, /files/ENCFF196TAE/ 5395096837 ENCODE Processing Pipeline a36a309b734c0b4ec8f9ac0d8aa32dd5 https://www.encodeproject.org/files/ENCFF130MHV/@@download/ENCFF130MHV.bam released s3://encode-public/2017/01/28/be7abda6-9857-45d0-9d96-b5ce4eb57e2a/ENCFF130MHV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF576YJV bam bam alignments hg19 ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF270OHP/, /files/ENCFF807MUK/, /files/ENCFF196TAE/ 4030907109 ENCODE Processing Pipeline 12836d96495a19c337196b1931f46439 https://www.encodeproject.org/files/ENCFF576YJV/@@download/ENCFF576YJV.bam released s3://encode-public/2017/01/28/09744e98-b7a9-4a3a-bcd4-98326f21d47a/ENCFF576YJV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF543JWW bam bam unfiltered alignments GRCh38 ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF196TAE/, /files/ENCFF270OHP/ 5407951852 ENCODE Processing Pipeline 62ce194b4c2594adb3ef292d0e1f5c91 https://www.encodeproject.org/files/ENCFF543JWW/@@download/ENCFF543JWW.bam released s3://encode-public/2020/06/02/249389a8-f158-4b6b-8ad5-114f9b1e47b7/ENCFF543JWW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF971TCR bam bam alignments GRCh38 ENCSR953MEE Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000473 testis tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF196TAE/, /files/ENCFF270OHP/ 3940471509 ENCODE Processing Pipeline 321bda9f18b791ee15e4ae98c131f3e2 https://www.encodeproject.org/files/ENCFF971TCR/@@download/ENCFF971TCR.bam released s3://encode-public/2020/06/02/2c09718f-13f7-4dee-8a28-e7aad9d7228c/ENCFF971TCR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF000QVP bam bam alignments hg19 ENCSR000BPQ Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000QVY/ 36658839 Richard Myers, HAIB fd874fd604fc1ea87da143f58e917c2f https://www.encodeproject.org/files/ENCFF000QVP/@@download/ENCFF000QVP.bam archived s3://encode-public/2012/01/23/7e04d656-342a-4107-95f7-81d798cdc8a0/ENCFF000QVP.bam Lab custom hg19 archived low read depth, low read length ENCFF000QVR bigWig bigWig raw signal hg19 ENCSR000BPQ Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 2799794 Richard Myers, HAIB b1593a8da8b4ea0941ac1e24a7991be1 https://www.encodeproject.org/files/ENCFF000QVR/@@download/ENCFF000QVR.bigWig archived s3://encode-public/2012/01/23/478a9a3e-849b-4a6c-81cd-2514ef8dcb7e/ENCFF000QVR.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000QVY fastq fastq reads ENCSR000BPQ Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 796957335 Richard Myers, HAIB 289e822443d25be8537d0281107f04d0 https://www.encodeproject.org/files/ENCFF000QVY/@@download/ENCFF000QVY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/d835d889-f27a-47d6-a005-fee5dc6ddd8a/ENCFF000QVY.fastq.gz low read depth, low read length ENCFF277GHL bam bam unfiltered alignments GRCh38 ENCSR000BPQ Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000QVY/, /files/ENCFF643CGH/ 1011252782 ENCODE Processing Pipeline 0ee31edac908cd4f03e88a3f24431c4f https://www.encodeproject.org/files/ENCFF277GHL/@@download/ENCFF277GHL.bam released s3://encode-public/2016/10/26/ba89b398-aba7-4d28-8833-c10d4fb96ac2/ENCFF277GHL.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF421EKC bam 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{'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 133613957 Michael Snyder, Stanford 15e1f6506a5d05abe6c0592bcaa7b4ea https://www.encodeproject.org/files/ENCFF094UZU/@@download/ENCFF094UZU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ed7208af-b9f5-4543-8f1d-b69cb505d23c/ENCFF094UZU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF680ENR fastq fastq reads ENCSR941UZQ Control 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s3://encode-public/2015/12/07/f7232241-fa8e-4d71-a241-288e8a961841/ENCFF680ENR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF158XJV bam bam alignments ce10 ENCSR941UZQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF094UZU/, /files/ENCFF680ENR/, /files/ENCFF987UMF/ 328050449 Kevin White, UChicago ffe76f14f327c818a3455d4495544129 https://www.encodeproject.org/files/ENCFF158XJV/@@download/ENCFF158XJV.bam released s3://encode-public/2016/10/18/710508ec-5f3e-4eef-82a7-5dc98030ecd1/ENCFF158XJV.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF409GCF bam bam alignments ce11 ENCSR941UZQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF094UZU/, /files/ENCFF680ENR/, /files/ENCFF586MOL/ 328380250 Kevin White, UChicago df737a258f53a53a421665a0528b535f https://www.encodeproject.org/files/ENCFF409GCF/@@download/ENCFF409GCF.bam released s3://encode-public/2016/10/19/444afff0-059a-48da-b203-86cc9c73818a/ENCFF409GCF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF111IHG bigWig bigWig read-depth normalized signal ce10 ENCSR941UZQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF158XJV/ 9987906 Kevin White, UChicago 9e8fe50ebe00babda447c000e3295599 https://www.encodeproject.org/files/ENCFF111IHG/@@download/ENCFF111IHG.bigWig released s3://encode-public/2016/10/20/2b2282b3-2fb8-4769-9251-74abc70bf25a/ENCFF111IHG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF659PBU bigWig bigWig signal of unique reads ce10 ENCSR941UZQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF158XJV/ 10036476 Kevin White, UChicago e9cdab5978c1ab86899279e630a71d75 https://www.encodeproject.org/files/ENCFF659PBU/@@download/ENCFF659PBU.bigWig released s3://encode-public/2016/10/20/2891a608-3643-441f-9515-c6075d6b2ac7/ENCFF659PBU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF589GZW bigWig bigWig signal of unique reads ce11 ENCSR941UZQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF409GCF/ 10033054 Kevin White, UChicago 6181a278a5862b3668e620c42fb46f80 https://www.encodeproject.org/files/ENCFF589GZW/@@download/ENCFF589GZW.bigWig released s3://encode-public/2016/10/21/d47ba32c-84e8-495e-b6c5-d1fb42be1dc8/ENCFF589GZW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF203PAY bigWig bigWig read-depth normalized signal ce11 ENCSR941UZQ Control ChIP-seq /worm-donors/ENCDO928PPI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF409GCF/ 9987547 Kevin White, UChicago 3851fe7e044e42e220cc31c83299ef15 https://www.encodeproject.org/files/ENCFF203PAY/@@download/ENCFF203PAY.bigWig released s3://encode-public/2016/10/21/28413d82-7458-415e-a4a5-3ba995dc5aad/ENCFF203PAY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF098YMI fastq fastq reads ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF107FJA/ 2667249365 Richard Myers, HAIB c0f5d5929ccc273ccb53a6e26398620f SRA:SRR6213579 https://www.encodeproject.org/files/ENCFF098YMI/@@download/ENCFF098YMI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/0528f098-7ab9-4e1e-aba8-e5b3a05ad6c9/ENCFF098YMI.fastq.gz ENCFF107FJA fastq fastq reads ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF098YMI/ 2800104308 Richard Myers, HAIB 73894ddeeeaa3a8df176b1eb3b06a188 SRA:SRR6213579 https://www.encodeproject.org/files/ENCFF107FJA/@@download/ENCFF107FJA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/36079611-32ed-457c-9d84-b01a149e57ce/ENCFF107FJA.fastq.gz ENCFF730BKS bam bam unfiltered alignments hg19 ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF098YMI/, /files/ENCFF807MUK/, /files/ENCFF107FJA/ 6498397961 ENCODE Processing Pipeline 1e9bb2302537676383b3c30b902abe04 https://www.encodeproject.org/files/ENCFF730BKS/@@download/ENCFF730BKS.bam released s3://encode-public/2017/02/02/3d6cfa29-77e1-42df-ba5e-ae35bbe5f08b/ENCFF730BKS.bam ENCODE3 hg19 archived ENCFF935NZL bam bam alignments hg19 ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF098YMI/, /files/ENCFF807MUK/, /files/ENCFF107FJA/ 4565476185 ENCODE Processing Pipeline 2d635a70803bc1d59688d6850c5ad245 https://www.encodeproject.org/files/ENCFF935NZL/@@download/ENCFF935NZL.bam released s3://encode-public/2017/02/02/1af19eef-6fb9-42d8-9c1b-136762592fa3/ENCFF935NZL.bam ENCODE3 hg19 archived ENCFF589QQJ bam bam unfiltered alignments GRCh38 ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF098YMI/, /files/ENCFF643CGH/, /files/ENCFF107FJA/ 6524378113 ENCODE Processing Pipeline eced80247b61e4f55f30283800e31950 https://www.encodeproject.org/files/ENCFF589QQJ/@@download/ENCFF589QQJ.bam released s3://encode-public/2017/02/02/59a2fccc-f7c8-48dc-a36c-bb9e74c2a45d/ENCFF589QQJ.bam ENCODE3 GRCh38 archived ENCFF813RGH bam bam alignments GRCh38 ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF098YMI/, /files/ENCFF643CGH/, /files/ENCFF107FJA/ 4572098261 ENCODE Processing Pipeline 39a7777ba26b8a20f213769b72f13a2c https://www.encodeproject.org/files/ENCFF813RGH/@@download/ENCFF813RGH.bam released s3://encode-public/2017/02/02/b49afe14-d0d8-4cee-a787-fcd28d991218/ENCFF813RGH.bam ENCODE3 GRCh38 archived ENCFF620UKX bam bam unfiltered alignments GRCh38 ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF107FJA/, /files/ENCFF098YMI/ 6545767339 ENCODE Processing Pipeline 211ddd32a83a764783725576755423ea https://www.encodeproject.org/files/ENCFF620UKX/@@download/ENCFF620UKX.bam released s3://encode-public/2020/10/28/df22f075-5884-4168-bc99-23dff0977ad0/ENCFF620UKX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF269OGV bam bam alignments GRCh38 ENCSR666SXC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF107FJA/, /files/ENCFF098YMI/ 4329025744 ENCODE Processing Pipeline 9e17c224a6ffc17e3c166e7601e6fd60 https://www.encodeproject.org/files/ENCFF269OGV/@@download/ENCFF269OGV.bam released s3://encode-public/2020/10/28/d97eca05-0ca3-45dc-9db4-8076d95d2adf/ENCFF269OGV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF928XSV fastq fastq reads ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 205797270 Michael Snyder, Stanford f49b5389aa4b58918909c54066ea266f https://www.encodeproject.org/files/ENCFF928XSV/@@download/ENCFF928XSV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/94f68382-1749-4811-ae2c-158b6d2ade71/ENCFF928XSV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF378YOF fastq fastq reads ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 184287920 Michael Snyder, Stanford e45e27f3f2737f7e75ec5d28b3b93a06 https://www.encodeproject.org/files/ENCFF378YOF/@@download/ENCFF378YOF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c4156089-bc45-48e5-82e2-ecc616973854/ENCFF378YOF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF566MFW bam bam alignments ce10 ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF928XSV/, /files/ENCFF378YOF/, /files/ENCFF987UMF/ 388633690 Kevin White, UChicago d2b39f4858d327cebd43d050432bc84d https://www.encodeproject.org/files/ENCFF566MFW/@@download/ENCFF566MFW.bam released s3://encode-public/2016/10/18/924c394e-0004-4147-8d5f-5f882b2b2a7c/ENCFF566MFW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF883FVR bam bam alignments ce11 ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF928XSV/, /files/ENCFF378YOF/, /files/ENCFF586MOL/ 388926960 Kevin White, UChicago 71f897438c3815efc2612ccc8072a5fa https://www.encodeproject.org/files/ENCFF883FVR/@@download/ENCFF883FVR.bam released s3://encode-public/2016/10/18/08dd84cd-3e6a-4e09-b7ac-44214c811162/ENCFF883FVR.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF562JZP bigWig bigWig read-depth normalized signal ce10 ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF566MFW/ 9974314 Kevin White, UChicago f606d7294b15aefe80ede6443f672b26 https://www.encodeproject.org/files/ENCFF562JZP/@@download/ENCFF562JZP.bigWig released s3://encode-public/2016/10/20/b42650b3-79a2-4354-9fa3-1649be4eb2ad/ENCFF562JZP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF085ADD bigWig bigWig signal of unique reads ce10 ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF566MFW/ 10032367 Kevin White, UChicago ddf5b269874d7b00ab61c26c87c2d672 https://www.encodeproject.org/files/ENCFF085ADD/@@download/ENCFF085ADD.bigWig released s3://encode-public/2016/10/20/be54240c-63db-4f4b-a3be-c629316ee815/ENCFF085ADD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF410YTY bigWig bigWig signal of unique reads ce11 ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF883FVR/ 10029968 Kevin White, UChicago ec6d9eafd4e5c60065a1203cdbac3ff7 https://www.encodeproject.org/files/ENCFF410YTY/@@download/ENCFF410YTY.bigWig released s3://encode-public/2016/10/20/fa8cc159-a6fe-4dee-83cd-cfb069e264ec/ENCFF410YTY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF435JEH bigWig bigWig read-depth normalized signal ce11 ENCSR874NAF Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF883FVR/ 9972387 Kevin White, UChicago 7d9b2eabbb25989c63c4a244cd80b913 https://www.encodeproject.org/files/ENCFF435JEH/@@download/ENCFF435JEH.bigWig released s3://encode-public/2016/10/20/d354febf-7a05-426c-a07a-dbb6c9273439/ENCFF435JEH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF317EHD fastq fastq reads ENCSR645ZNG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 single-ended 1741509874 Richard Myers, HAIB 787ecc95712830fec05ddae9cde90359 SRA:SRR14842489 https://www.encodeproject.org/files/ENCFF317EHD/@@download/ENCFF317EHD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/05/cf711a93-7d1d-4b59-9c01-a5e5e41efb69/ENCFF317EHD.fastq.gz ENCFF695RMA bam bam unfiltered alignments mm10 ENCSR645ZNG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF317EHD/ 1869135986 ENCODE Processing Pipeline 97897b5705c0542a21e8bd23b58f3cc2 https://www.encodeproject.org/files/ENCFF695RMA/@@download/ENCFF695RMA.bam released s3://encode-public/2016/05/20/e1a3dc02-ef12-4f67-8595-2ac5e9943fee/ENCFF695RMA.bam ENCODE3 mm10 archived ENCFF092ZOE bam bam alignments mm10 ENCSR645ZNG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF317EHD/ 1414154227 ENCODE Processing Pipeline f01ee73ce1fd0de2b4fa3a2232071463 https://www.encodeproject.org/files/ENCFF092ZOE/@@download/ENCFF092ZOE.bam released s3://encode-public/2016/05/20/8bf9d7c8-0193-40d7-9305-d7bd0ff705d2/ENCFF092ZOE.bam ENCODE3 mm10 archived ENCFF835HQU bam bam unfiltered alignments mm10 ENCSR645ZNG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF317EHD/ 1852443659 ENCODE Processing Pipeline 8c94eb1de8ba045269af10eb01e75e1f https://www.encodeproject.org/files/ENCFF835HQU/@@download/ENCFF835HQU.bam released s3://encode-public/2020/11/06/42c672df-6b51-44c0-9552-7b112d73ed39/ENCFF835HQU.bam ENCODE4 v1.6.1 mm10 released ENCFF431BVX bam bam alignments mm10 ENCSR645ZNG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF317EHD/ 1459585055 ENCODE Processing Pipeline eda284b7f65b837129ce63473452dbb3 https://www.encodeproject.org/files/ENCFF431BVX/@@download/ENCFF431BVX.bam released s3://encode-public/2020/11/06/8c9f3485-61ca-442e-a7af-f57e897c35a6/ENCFF431BVX.bam ENCODE4 v1.6.1 mm10 released ENCFF293VFJ fastq fastq reads ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF367IPF/ 2383604311 Michael Snyder, Stanford 2c5c30381a8705de97b88f82cd5e55a9 SRA:SRR6213151 https://www.encodeproject.org/files/ENCFF293VFJ/@@download/ENCFF293VFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/58174934-f69f-4bdd-b212-65fc0914f1a5/ENCFF293VFJ.fastq.gz ENCFF367IPF fastq fastq reads ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF293VFJ/ 2701097146 Michael Snyder, Stanford e11d6e0ca6c4952476ef334165219b95 SRA:SRR6213151 https://www.encodeproject.org/files/ENCFF367IPF/@@download/ENCFF367IPF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/ecd0f993-163b-4092-a1e4-afc462b78c89/ENCFF367IPF.fastq.gz ENCFF242HNU bam bam alignments GRCh38 ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF293VFJ/, /files/ENCFF367IPF/ 4211707635 ENCODE Processing Pipeline 5c42f05e83452581b7aead2f6533a070 https://www.encodeproject.org/files/ENCFF242HNU/@@download/ENCFF242HNU.bam released s3://encode-public/2017/01/27/48703c76-92b9-483a-9838-c1004bf89d40/ENCFF242HNU.bam ENCODE3 GRCh38 archived ENCFF863SZQ bam bam unfiltered alignments GRCh38 ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF293VFJ/, /files/ENCFF367IPF/ 5162592524 ENCODE Processing Pipeline c76a8a9cde5cd21e31151d0922e413b4 https://www.encodeproject.org/files/ENCFF863SZQ/@@download/ENCFF863SZQ.bam released s3://encode-public/2017/01/27/0926acbb-8e60-45f4-9692-d88ab8933fbe/ENCFF863SZQ.bam ENCODE3 GRCh38 archived ENCFF377GCV bam bam unfiltered alignments hg19 ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF293VFJ/, /files/ENCFF367IPF/ 5151766943 ENCODE Processing Pipeline e7a7686f4d3d57beac7f6d45fa2049c3 https://www.encodeproject.org/files/ENCFF377GCV/@@download/ENCFF377GCV.bam released s3://encode-public/2017/01/28/b7ee8a9e-323b-41aa-bb9b-828f14dd94a3/ENCFF377GCV.bam ENCODE3 hg19 archived ENCFF888YHU bam bam alignments hg19 ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF293VFJ/, /files/ENCFF367IPF/ 4205525918 ENCODE Processing Pipeline 0da2fb05654bd02a6247aa385f69ffb5 https://www.encodeproject.org/files/ENCFF888YHU/@@download/ENCFF888YHU.bam released s3://encode-public/2017/01/28/e64c61f6-bfb1-4182-a0bd-b7f7707cfcaf/ENCFF888YHU.bam ENCODE3 hg19 archived ENCFF305FFV bam bam alignments GRCh38 ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF293VFJ/, /files/ENCFF367IPF/ 4175787911 ENCODE Processing Pipeline 3e3bba3efc27baafca5a28156467c29c https://www.encodeproject.org/files/ENCFF305FFV/@@download/ENCFF305FFV.bam released s3://encode-public/2020/06/03/276189c0-3b6a-432b-9e97-a9ada5c0627f/ENCFF305FFV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF970MIR bam bam unfiltered alignments GRCh38 ENCSR067AZA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF293VFJ/, /files/ENCFF367IPF/ 5143007209 ENCODE Processing Pipeline e149b1b83211a9969bd14fc4d87fde1b https://www.encodeproject.org/files/ENCFF970MIR/@@download/ENCFF970MIR.bam released s3://encode-public/2020/06/03/42ce7790-cbb4-4ada-99ba-c894801ab22c/ENCFF970MIR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF013LKM bam bam redacted unfiltered alignments GRCh38 ENCSR837RXS Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF842LNS/, /files/ENCFF643CGH/, /files/ENCFF988WWE/ 808716399 ENCODE Processing Pipeline 6b372b9fc11235d9823bca892485f8dc https://www.encodeproject.org/files/ENCFF013LKM/@@download/ENCFF013LKM.bam released s3://encode-public/2017/11/09/8caa022d-a5a8-4021-8401-5dac5a7ba941/ENCFF013LKM.bam ENCODE3 GRCh38 archived ENCFF751MCU bam bam redacted alignments GRCh38 ENCSR837RXS Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF842LNS/, /files/ENCFF643CGH/, /files/ENCFF988WWE/ 661462058 ENCODE Processing Pipeline 59c2547cc6ba9fb4257c43aed82f0b46 https://www.encodeproject.org/files/ENCFF751MCU/@@download/ENCFF751MCU.bam released s3://encode-public/2017/11/09/bd26ff70-773b-4394-b005-f80c53983c5c/ENCFF751MCU.bam ENCODE3 GRCh38 archived ENCFF703FZL bam bam redacted alignments hg19 ENCSR837RXS Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF842LNS/, /files/ENCFF807MUK/, /files/ENCFF988WWE/ 660545557 ENCODE Processing Pipeline cc7fa56cfbb2a1612fb1ee85c852f3f6 https://www.encodeproject.org/files/ENCFF703FZL/@@download/ENCFF703FZL.bam released s3://encode-public/2018/01/20/5d73858c-ed76-4b98-a152-4c5e0483e49a/ENCFF703FZL.bam ENCODE3 hg19 archived ENCFF135NOB bam bam redacted unfiltered alignments hg19 ENCSR837RXS Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF842LNS/, /files/ENCFF807MUK/, /files/ENCFF988WWE/ 795213675 ENCODE Processing Pipeline 1a6000cdcb9ae808a91bc9617163c532 https://www.encodeproject.org/files/ENCFF135NOB/@@download/ENCFF135NOB.bam released s3://encode-public/2018/01/20/c1e5b778-76a2-4120-bc9b-87de9827ac43/ENCFF135NOB.bam ENCODE3 hg19 archived ENCFF407IUR bam bam redacted alignments GRCh38 ENCSR837RXS Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF920OSD/, /files/ENCFF459WLU/, /files/ENCFF110MCL/ 3940429195 ENCODE Processing Pipeline 6b5e4fff9d05117a2af27e8bd021d7ab https://www.encodeproject.org/files/ENCFF407IUR/@@download/ENCFF407IUR.bam released s3://encode-public/2021/01/28/78ed014f-665d-4b51-a205-1d979804158f/ENCFF407IUR.bam ENCODE4 v1.7.0 GRCh38 released ENCFF720TXT fastq fastq reads ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF887QUQ/ 1448924720 Richard Myers, HAIB b8d8ce7abd184a22dcd048728b00d045 SRA:SRR6213378 https://www.encodeproject.org/files/ENCFF720TXT/@@download/ENCFF720TXT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/7c14ba0a-3465-4ffd-a873-2e726b446797/ENCFF720TXT.fastq.gz ENCFF887QUQ fastq fastq reads ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF720TXT/ 1480997486 Richard Myers, HAIB a503002067563450255edda73602857c SRA:SRR6213378 https://www.encodeproject.org/files/ENCFF887QUQ/@@download/ENCFF887QUQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/6e8ca281-2746-4c87-88d4-c7e7fab1b90d/ENCFF887QUQ.fastq.gz ENCFF383FRB bam bam unfiltered alignments hg19 ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF720TXT/, /files/ENCFF807MUK/, /files/ENCFF887QUQ/ 3485463544 ENCODE Processing Pipeline 2e4e8c413941768bba1ee5f4a55cd589 https://www.encodeproject.org/files/ENCFF383FRB/@@download/ENCFF383FRB.bam released s3://encode-public/2017/02/02/3a82752a-935c-41ed-97a7-cb642f26b66b/ENCFF383FRB.bam ENCODE3 hg19 archived ENCFF471TLL bam bam unfiltered alignments GRCh38 ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF720TXT/, /files/ENCFF643CGH/, /files/ENCFF887QUQ/ 3499051101 ENCODE Processing Pipeline 0f4cf15234597f333df58d73e6ff67ec https://www.encodeproject.org/files/ENCFF471TLL/@@download/ENCFF471TLL.bam released s3://encode-public/2017/02/02/7aad522c-7f94-49be-9359-689d33af87a0/ENCFF471TLL.bam ENCODE3 GRCh38 archived ENCFF025ELW bam bam alignments GRCh38 ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF720TXT/, /files/ENCFF643CGH/, /files/ENCFF887QUQ/ 2517985951 ENCODE Processing Pipeline c4ffadfa961844e9f56a25e4568bb728 https://www.encodeproject.org/files/ENCFF025ELW/@@download/ENCFF025ELW.bam released s3://encode-public/2017/02/02/e90911fb-a48c-4dc3-8ea3-def409d679b8/ENCFF025ELW.bam ENCODE3 GRCh38 archived ENCFF288GXC bam bam alignments hg19 ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF720TXT/, /files/ENCFF807MUK/, /files/ENCFF887QUQ/ 2515418512 ENCODE Processing Pipeline a28e3807ed93019c83963119bd92d7f4 https://www.encodeproject.org/files/ENCFF288GXC/@@download/ENCFF288GXC.bam released s3://encode-public/2017/02/02/d76a0f62-c6fd-4c60-b3a1-a7ae4604ee81/ENCFF288GXC.bam ENCODE3 hg19 archived ENCFF680ZSE bam bam unfiltered alignments GRCh38 ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF720TXT/, /files/ENCFF887QUQ/ 3682079432 ENCODE Processing Pipeline df811f3c07fcd3ee697bab5badd02a00 https://www.encodeproject.org/files/ENCFF680ZSE/@@download/ENCFF680ZSE.bam released s3://encode-public/2020/06/06/547fe0ff-5fb6-4207-a5cf-1ac55ead5c19/ENCFF680ZSE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF859TYD bam bam alignments GRCh38 ENCSR508MUL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF720TXT/, /files/ENCFF887QUQ/ 2487354510 ENCODE Processing Pipeline 81b921a3123ff73f190e58e2407ca9d7 https://www.encodeproject.org/files/ENCFF859TYD/@@download/ENCFF859TYD.bam released s3://encode-public/2020/06/06/46ca8461-63b3-4bb9-a40e-210387251520/ENCFF859TYD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF889SRL fastq fastq reads ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 58583970 Michael Snyder, Stanford ad1b856d63abd72bf5b2c9cb8fa76de7 https://www.encodeproject.org/files/ENCFF889SRL/@@download/ENCFF889SRL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/3c9d73b5-6468-44c2-8440-3a45a71ebb26/ENCFF889SRL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF821QDO fastq fastq reads ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 50920592 Michael Snyder, Stanford d62173b50750319d3827f2776ae922d4 https://www.encodeproject.org/files/ENCFF821QDO/@@download/ENCFF821QDO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/cf717390-2257-4a9c-a1d3-83a61436e9b6/ENCFF821QDO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF989YSF bam bam alignments ce10 ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF889SRL/, /files/ENCFF821QDO/, /files/ENCFF987UMF/ 146731949 Kevin White, UChicago 4055a48ea75c641b48623fed4352578e https://www.encodeproject.org/files/ENCFF989YSF/@@download/ENCFF989YSF.bam released s3://encode-public/2016/10/18/7606a146-9cdc-4aa8-9327-b40612f26a9c/ENCFF989YSF.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF102ACB bam bam alignments ce11 ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF889SRL/, /files/ENCFF821QDO/, /files/ENCFF586MOL/ 146900719 Kevin White, UChicago a67a73a4ea209eeb2c345a53472b301d https://www.encodeproject.org/files/ENCFF102ACB/@@download/ENCFF102ACB.bam released s3://encode-public/2016/10/18/e839ae61-0fa5-4138-b375-f52556c05fd1/ENCFF102ACB.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF728LNN bigWig bigWig signal of unique reads ce10 ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF989YSF/ 10060801 Kevin White, UChicago d82e8c65484e08374742c81b5f305f29 https://www.encodeproject.org/files/ENCFF728LNN/@@download/ENCFF728LNN.bigWig released s3://encode-public/2016/10/20/1d53e6a3-a818-458a-bfe2-aca1e63988ee/ENCFF728LNN.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF850BVC bigWig bigWig read-depth normalized signal ce10 ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF989YSF/ 10081287 Kevin White, UChicago 191602cd4d4fd76986a585da70ca19cd https://www.encodeproject.org/files/ENCFF850BVC/@@download/ENCFF850BVC.bigWig released s3://encode-public/2016/10/20/8d3f3799-aedf-4d2e-856f-87115919c3cc/ENCFF850BVC.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF407YGY bigWig bigWig signal of unique reads ce11 ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF102ACB/ 10061931 Kevin White, UChicago d4dfe7fa635a1e5944e88b27da9f55b2 https://www.encodeproject.org/files/ENCFF407YGY/@@download/ENCFF407YGY.bigWig released s3://encode-public/2016/10/20/1384a5c0-e5fc-4a3a-985b-1a9000345d16/ENCFF407YGY.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF111MCS bigWig bigWig read-depth normalized signal ce11 ENCSR824HDB Control ChIP-seq /worm-donors/ENCDO759AKW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173788/'], '@type': ['Target', 'Item'], 'name': 'hlh-1-celegans', 'label': 'hlh-1', '@id': '/targets/hlh-1-celegans/', 'title': 'hlh-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '721df085-9427-4737-8ca3-3a92d066a934', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF102ACB/ 10081646 Kevin White, UChicago fa302a02b0c10e2945bf3c4ed9a85b12 https://www.encodeproject.org/files/ENCFF111MCS/@@download/ENCFF111MCS.bigWig released s3://encode-public/2016/10/20/9fccb01e-67e0-42d6-a787-403b5ae4ebc1/ENCFF111MCS.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF916VDS fastq fastq reads ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF567TLA/ 2944032900 Richard Myers, HAIB 7a5692cab39e3432ada549bdfa3a567f SRA:SRR6212892 https://www.encodeproject.org/files/ENCFF916VDS/@@download/ENCFF916VDS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/484812f5-2f4d-4042-baf7-f56d3345a43a/ENCFF916VDS.fastq.gz ENCFF567TLA fastq fastq reads ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF916VDS/ 3000874486 Richard Myers, HAIB 1f0943c6920f38254cea149e9aa9ddd7 SRA:SRR6212892 https://www.encodeproject.org/files/ENCFF567TLA/@@download/ENCFF567TLA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/d95524da-3ad1-4e66-ba5b-2be322829e9a/ENCFF567TLA.fastq.gz ENCFF305OVL bam bam unfiltered alignments hg19 ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF567TLA/, /files/ENCFF807MUK/, /files/ENCFF916VDS/ 7091401293 ENCODE Processing Pipeline db669e9d6ab3060262165ae87d6b7f65 https://www.encodeproject.org/files/ENCFF305OVL/@@download/ENCFF305OVL.bam released s3://encode-public/2017/02/02/9a97c69c-3796-47f9-b944-d451e600266b/ENCFF305OVL.bam ENCODE3 hg19 archived ENCFF285TZQ bam bam alignments hg19 ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF567TLA/, /files/ENCFF807MUK/, /files/ENCFF916VDS/ 4882754543 ENCODE Processing Pipeline 2cc57d00cb0cccacbe7228e0304669f5 https://www.encodeproject.org/files/ENCFF285TZQ/@@download/ENCFF285TZQ.bam released s3://encode-public/2017/02/02/8ea5a631-f8d5-45b4-b596-f46217dda651/ENCFF285TZQ.bam ENCODE3 hg19 archived ENCFF451SMC bam bam alignments GRCh38 ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF567TLA/, /files/ENCFF643CGH/, /files/ENCFF916VDS/ 4891773124 ENCODE Processing Pipeline 7f7423ac783b477b35d4ba593fe86a5b https://www.encodeproject.org/files/ENCFF451SMC/@@download/ENCFF451SMC.bam released s3://encode-public/2017/02/02/5648e126-c36b-4a34-877d-8fbb91c0f83e/ENCFF451SMC.bam ENCODE3 GRCh38 archived ENCFF332OIY bam bam unfiltered alignments GRCh38 ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF567TLA/, /files/ENCFF643CGH/, /files/ENCFF916VDS/ 7125736876 ENCODE Processing Pipeline f233e1ff9e94ae6aa921ae5697b6bcd2 https://www.encodeproject.org/files/ENCFF332OIY/@@download/ENCFF332OIY.bam released s3://encode-public/2017/02/02/a41356dc-adb8-4b1c-93d4-197fdd18294d/ENCFF332OIY.bam ENCODE3 GRCh38 archived ENCFF840GHT bam bam unfiltered alignments GRCh38 ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF916VDS/, /files/ENCFF567TLA/ 7183527437 ENCODE Processing Pipeline 47e0e14ec387cebc9bd50bce9b7e08d7 https://www.encodeproject.org/files/ENCFF840GHT/@@download/ENCFF840GHT.bam released s3://encode-public/2020/10/28/2f777a75-e2dc-4e2f-b5f3-ad39a7d0ebf8/ENCFF840GHT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF796ODE bam bam alignments GRCh38 ENCSR225UUX Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF916VDS/, /files/ENCFF567TLA/ 4607147085 ENCODE Processing Pipeline c52d8ce11b409ef05a5d8e349e71c7b1 https://www.encodeproject.org/files/ENCFF796ODE/@@download/ENCFF796ODE.bam released s3://encode-public/2020/10/28/57645d44-c860-49dd-82a8-b6a36210aa9a/ENCFF796ODE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF695QQF fastq fastq reads ENCSR322WTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58492/'], '@type': ['Target', 'Item'], 'name': 'ZNF77-human', 'label': 'ZNF77', '@id': '/targets/ZNF77-human/', 'title': 'ZNF77 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fa51259-0700-4e72-ba30-7e49474471e8', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF953DKB/ 1982598713 Michael Snyder, Stanford 8c798e2889047acea280f3593240e41a SRA:SRR14105152 https://www.encodeproject.org/files/ENCFF695QQF/@@download/ENCFF695QQF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/10/9d6e6808-3f9e-4e88-93de-03e52bbca930/ENCFF695QQF.fastq.gz missing compliant biosample characterization ENCFF953DKB fastq fastq reads ENCSR322WTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58492/'], '@type': ['Target', 'Item'], 'name': 'ZNF77-human', 'label': 'ZNF77', '@id': '/targets/ZNF77-human/', 'title': 'ZNF77 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fa51259-0700-4e72-ba30-7e49474471e8', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF695QQF/ 2496246380 Michael Snyder, Stanford a72e0a56cbc70b0ca1af0b379e2d814b SRA:SRR14105152 https://www.encodeproject.org/files/ENCFF953DKB/@@download/ENCFF953DKB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/10/21488bab-4f0a-4b8e-9b07-612743e15eff/ENCFF953DKB.fastq.gz missing compliant biosample characterization ENCFF860GLJ bam bam alignments GRCh38 ENCSR322WTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58492/'], '@type': ['Target', 'Item'], 'name': 'ZNF77-human', 'label': 'ZNF77', '@id': '/targets/ZNF77-human/', 'title': 'ZNF77 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fa51259-0700-4e72-ba30-7e49474471e8', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF695QQF/, /files/ENCFF953DKB/ 3776520535 ENCODE Processing Pipeline 5763a4536dc7b9ed6bddb1c8d0293e81 https://www.encodeproject.org/files/ENCFF860GLJ/@@download/ENCFF860GLJ.bam released s3://encode-public/2020/05/15/9a6f2038-9821-4185-ae44-cee9cb98e5b5/ENCFF860GLJ.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization ENCFF074QHW bam bam unfiltered alignments GRCh38 ENCSR322WTB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58492/'], '@type': ['Target', 'Item'], 'name': 'ZNF77-human', 'label': 'ZNF77', '@id': '/targets/ZNF77-human/', 'title': 'ZNF77 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fa51259-0700-4e72-ba30-7e49474471e8', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF695QQF/, /files/ENCFF953DKB/ 4761880914 ENCODE Processing Pipeline eb252fd99665e59ac0d6c04c5a0c99e8 https://www.encodeproject.org/files/ENCFF074QHW/@@download/ENCFF074QHW.bam released s3://encode-public/2020/05/15/93ea7773-d1c0-4231-b4cc-5fd19598cc04/ENCFF074QHW.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization ENCFF269BTX fastq fastq reads ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF605FUW/ 2553497321 Richard Myers, HAIB 172cc2ac55dce9c9bfab0fa3d293b137 SRA:SRR8660035 https://www.encodeproject.org/files/ENCFF269BTX/@@download/ENCFF269BTX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/b9631522-ebf0-449b-8606-e37c9cff9baa/ENCFF269BTX.fastq.gz ENCFF605FUW fastq fastq reads ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF269BTX/ 2607638108 Richard Myers, HAIB e785cc5acbabb619d53cecc6cd120836 SRA:SRR8660035 https://www.encodeproject.org/files/ENCFF605FUW/@@download/ENCFF605FUW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/609f11f3-4c94-409d-8cb8-59fbb0fc2bc6/ENCFF605FUW.fastq.gz ENCFF154AUY bam bam unfiltered alignments hg19 ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF605FUW/, /files/ENCFF269BTX/, /files/ENCFF807MUK/ 6227610790 ENCODE Processing Pipeline 6201177970f5f42d1df25ea437f75e73 https://www.encodeproject.org/files/ENCFF154AUY/@@download/ENCFF154AUY.bam released s3://encode-public/2017/02/02/12dd590c-b3f5-4435-90f2-1b6f8220fbcf/ENCFF154AUY.bam ENCODE3 hg19 archived ENCFF962NQY bam bam alignments hg19 ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF605FUW/, /files/ENCFF269BTX/, /files/ENCFF807MUK/ 4657001879 ENCODE Processing Pipeline 96d77611abb7773b57ae700c832bca16 https://www.encodeproject.org/files/ENCFF962NQY/@@download/ENCFF962NQY.bam released s3://encode-public/2017/02/02/402fbe54-91c7-4623-ba0e-f3cac2eefcda/ENCFF962NQY.bam ENCODE3 hg19 archived ENCFF644VPY bam bam unfiltered alignments GRCh38 ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF605FUW/, /files/ENCFF269BTX/, /files/ENCFF643CGH/ 6253906112 ENCODE Processing Pipeline cd3cdaf9af9c8cf58b34182313d980b1 https://www.encodeproject.org/files/ENCFF644VPY/@@download/ENCFF644VPY.bam released s3://encode-public/2017/02/02/f58bc000-3de3-4b87-86bd-fd5f0f896eed/ENCFF644VPY.bam ENCODE3 GRCh38 archived ENCFF858COI bam bam alignments GRCh38 ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF605FUW/, /files/ENCFF269BTX/, /files/ENCFF643CGH/ 4661330830 ENCODE Processing Pipeline 27fab72292b41095df9199130c7235b6 https://www.encodeproject.org/files/ENCFF858COI/@@download/ENCFF858COI.bam released s3://encode-public/2017/02/02/6774cfcc-c5ff-415f-a056-8eae5fcb9c3c/ENCFF858COI.bam ENCODE3 GRCh38 archived ENCFF060WXX bam bam unfiltered alignments GRCh38 ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF269BTX/, /files/ENCFF605FUW/ 6228825775 ENCODE Processing Pipeline 00368b358148e69e71f83d49906e3116 https://www.encodeproject.org/files/ENCFF060WXX/@@download/ENCFF060WXX.bam released s3://encode-public/2020/06/06/6bc9e54a-7592-47ec-8e30-a510f19f1461/ENCFF060WXX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF957NBL bam bam alignments GRCh38 ENCSR089MPD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF269BTX/, /files/ENCFF605FUW/ 4398510667 ENCODE Processing Pipeline 61a7293413a2428bb19edb4b6b87523c https://www.encodeproject.org/files/ENCFF957NBL/@@download/ENCFF957NBL.bam released s3://encode-public/2020/06/06/692d7ac1-9e4c-4933-86f9-f914c9746923/ENCFF957NBL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF000VWE bam bam alignments hg19 ENCSR000EAB Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 34 575562753 Michael Snyder, Stanford ef98ef2aff4fe48d75d273a57cf917a7 https://www.encodeproject.org/files/ENCFF000VWE/@@download/ENCFF000VWE.bam archived s3://encode-public/2012/07/01/5c601666-53b3-4bea-b079-bddd0ba2db0f/ENCFF000VWE.bam Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000VWF fastq fastq reads ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 761559286 Michael Snyder, Stanford 6934d5746dabc49bee38f119e3b3b2b0 https://www.encodeproject.org/files/ENCFF000VWF/@@download/ENCFF000VWF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/26158c1e-aac4-49ab-beb3-4d546700137d/ENCFF000VWF.fastq.gz low read depth, low read length insufficient read depth ENCFF000VWJ bigWig bigWig signal hg19 ENCSR000EAB Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 182511439 Michael Snyder, Stanford 74e3dd7c293d68550f784e7fada54083 https://www.encodeproject.org/files/ENCFF000VWJ/@@download/ENCFF000VWJ.bigWig archived s3://encode-public/2012/07/01/e61f87a9-fdf1-4070-a220-949eac030cac/ENCFF000VWJ.bigWig Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000VWH fastq fastq reads ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 36 single-ended 469863712 Michael Snyder, Stanford 361607751507c4927eb8fb66e9342eff https://www.encodeproject.org/files/ENCFF000VWH/@@download/ENCFF000VWH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/7f6c47c3-a32a-4a09-b452-432618c55231/ENCFF000VWH.fastq.gz low read depth, low read length insufficient read depth ENCFF082NBV bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000VWF/ 890754330 ENCODE Processing Pipeline 7a3294376a9db91f074c1e795c218512 https://www.encodeproject.org/files/ENCFF082NBV/@@download/ENCFF082NBV.bam released s3://encode-public/2016/10/26/e9e1edf0-115a-4f44-92de-53fe79bf0714/ENCFF082NBV.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF404KPR bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 36 /files/ENCFF000VWH/, /files/ENCFF643CGH/ 541831526 ENCODE Processing Pipeline 5966a7ad04dd3f5744eaf0d6fe19f9aa https://www.encodeproject.org/files/ENCFF404KPR/@@download/ENCFF404KPR.bam released s3://encode-public/2016/10/26/ecaeaf01-0bcd-4d0d-b941-2b73c3a90430/ENCFF404KPR.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF450WED bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 36 /files/ENCFF000VWH/, /files/ENCFF643CGH/ 378816091 ENCODE Processing Pipeline f8d1960cdc1084b0486cf9b1d20a480e https://www.encodeproject.org/files/ENCFF450WED/@@download/ENCFF450WED.bam released s3://encode-public/2016/10/26/ce56c327-2119-49da-b863-6fcd897a2b19/ENCFF450WED.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF579QDW bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000VWF/ 633213622 ENCODE Processing Pipeline 795b53a74ebaae07171571ed05b301ea https://www.encodeproject.org/files/ENCFF579QDW/@@download/ENCFF579QDW.bam released s3://encode-public/2016/10/26/be3b4f73-5691-4784-a4f7-222908e8995a/ENCFF579QDW.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF029OTB bam bam unfiltered alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 36 /files/ENCFF000VWH/, /files/ENCFF807MUK/ 540066823 ENCODE Processing Pipeline da46657afed7d472c054315bcb3d9de0 https://www.encodeproject.org/files/ENCFF029OTB/@@download/ENCFF029OTB.bam released s3://encode-public/2016/11/30/d80a3356-db38-42f3-a572-dc60cc11770f/ENCFF029OTB.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF920EPK bam bam unfiltered alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000VWF/ 886979667 ENCODE Processing Pipeline 198538be28f0ab8d70066dcf126b45dc https://www.encodeproject.org/files/ENCFF920EPK/@@download/ENCFF920EPK.bam released s3://encode-public/2016/11/30/83e2ca69-cf4f-4506-a8c3-65342ad33cef/ENCFF920EPK.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF267FMB bam bam alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000VWF/ 632938358 ENCODE Processing Pipeline d5c8bcbb050037262c35885950090a35 https://www.encodeproject.org/files/ENCFF267FMB/@@download/ENCFF267FMB.bam released s3://encode-public/2016/11/30/f5f94956-409d-45ac-ae0b-afd3ee0faeb0/ENCFF267FMB.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF378YAW bam bam alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 36 /files/ENCFF000VWH/, /files/ENCFF807MUK/ 377094147 ENCODE Processing Pipeline 6a760054c8b620ec4bb67028878ab1a5 https://www.encodeproject.org/files/ENCFF378YAW/@@download/ENCFF378YAW.bam released s3://encode-public/2016/11/30/1d05fc37-2283-4f92-863f-18856767a7e8/ENCFF378YAW.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF888BMM bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 36 /files/ENCFF000VWH/, /files/ENCFF110MCL/ 533662380 ENCODE Processing Pipeline fb8c0c8b039282b6ab2148f382013dd9 https://www.encodeproject.org/files/ENCFF888BMM/@@download/ENCFF888BMM.bam released s3://encode-public/2020/10/27/c319f4c5-d2f1-4c7f-a39f-7c3417f3f8f1/ENCFF888BMM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF580EDQ bam bam unfiltered alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VWH/, /files/ENCFF807MUK/ 468535139 ENCODE Processing Pipeline b08bc0a8e1ca932891418f6c9be77480 https://www.encodeproject.org/files/ENCFF580EDQ/@@download/ENCFF580EDQ.bam released s3://encode-public/2017/07/12/ae3a201f-9813-4afd-8cd2-d9d211c88404/ENCFF580EDQ.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF775SOB bam bam alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF807MUK/, /files/ENCFF000VWF/ 507720289 ENCODE Processing Pipeline ed36165870ff5932fba88a135b5471fb https://www.encodeproject.org/files/ENCFF775SOB/@@download/ENCFF775SOB.bam released s3://encode-public/2017/07/12/7d614115-60ee-4a3b-9555-f4396e975bd5/ENCFF775SOB.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF180OXX bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VWH/, /files/ENCFF643CGH/ 469873181 ENCODE Processing Pipeline 283bbe980adf79a40afad5d1d19e1dfd https://www.encodeproject.org/files/ENCFF180OXX/@@download/ENCFF180OXX.bam released s3://encode-public/2017/07/12/38b171b8-3fba-4802-962b-970272dc933a/ENCFF180OXX.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF824NQO bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VWH/, /files/ENCFF643CGH/ 304772836 ENCODE Processing Pipeline c5eea4735b8f9badad6ef63bd28dad85 https://www.encodeproject.org/files/ENCFF824NQO/@@download/ENCFF824NQO.bam released s3://encode-public/2017/07/12/e4efe0ae-1261-4219-b0c4-992e3a084b00/ENCFF824NQO.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF822MYC bam bam unfiltered alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF807MUK/, /files/ENCFF000VWF/ 770485366 ENCODE Processing Pipeline f8623af85eee07e3b4529fd91d1a5510 https://www.encodeproject.org/files/ENCFF822MYC/@@download/ENCFF822MYC.bam released s3://encode-public/2017/07/12/12733e44-8dc5-4185-986b-a69dcad0fe96/ENCFF822MYC.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF519TDX bam bam alignments hg19 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VWH/, /files/ENCFF807MUK/ 303364880 ENCODE Processing Pipeline 445ba211e6caa6a51bd7cba3486d7e5e https://www.encodeproject.org/files/ENCFF519TDX/@@download/ENCFF519TDX.bam released s3://encode-public/2017/07/12/fa71bd8e-13c3-4bb9-8e85-7d373dfe5c0f/ENCFF519TDX.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF813LMQ bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VWF/ 507735569 ENCODE Processing Pipeline 582f9c41f1f56ef625abcaebf1a075bd https://www.encodeproject.org/files/ENCFF813LMQ/@@download/ENCFF813LMQ.bam released s3://encode-public/2017/07/12/6743dd13-abb1-4a7c-8ddb-a6522cff286e/ENCFF813LMQ.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF590RJM bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VWF/ 773281415 ENCODE Processing Pipeline 25f46edd3d764c519904bf2deaa435ac https://www.encodeproject.org/files/ENCFF590RJM/@@download/ENCFF590RJM.bam released s3://encode-public/2017/07/12/6ee15c26-db4b-4e6c-987d-e7bca7844d0a/ENCFF590RJM.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF770CJK bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000VWF/, /files/ENCFF110MCL/ 689774354 ENCODE Processing Pipeline 4365c3054a4fba4b6ef63da65d4b5ec5 https://www.encodeproject.org/files/ENCFF770CJK/@@download/ENCFF770CJK.bam released s3://encode-public/2020/10/27/fc48e926-1107-4c0c-abc0-5bf1234b23e4/ENCFF770CJK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF196PQA bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 36 /files/ENCFF000VWH/, /files/ENCFF110MCL/ 408825006 ENCODE Processing Pipeline 203e03b36751de8b95c49d8ebbc104d9 https://www.encodeproject.org/files/ENCFF196PQA/@@download/ENCFF196PQA.bam released s3://encode-public/2020/10/27/096ac02a-8417-4f0d-8e11-0f181b31b928/ENCFF196PQA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF624OWL bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000VWF/, /files/ENCFF110MCL/ 874716545 ENCODE Processing Pipeline 948d78f69c504cb53a6c0ab5895b8e17 https://www.encodeproject.org/files/ENCFF624OWL/@@download/ENCFF624OWL.bam released s3://encode-public/2020/10/27/9bc83232-0b6b-4e4c-8be0-81699e6dce55/ENCFF624OWL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF021PSO bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWF/ 742767094 ENCODE Processing Pipeline 80488ebd173e20e641026b58a7e989af https://www.encodeproject.org/files/ENCFF021PSO/@@download/ENCFF021PSO.bam released s3://encode-public/2021/01/06/f92f5da0-cc3b-4e34-a020-82780ba0ccaa/ENCFF021PSO.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF711RGA bam bam unfiltered alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VWH/, /files/ENCFF110MCL/ 453470340 ENCODE Processing Pipeline 53a1b1ad8960a5a07cda316b0e2bf374 https://www.encodeproject.org/files/ENCFF711RGA/@@download/ENCFF711RGA.bam released s3://encode-public/2021/01/06/35a028aa-8cfe-4e07-8172-2e4de58b45c3/ENCFF711RGA.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF042LWY bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWF/ 544985607 ENCODE Processing Pipeline e83ea8ae2f3816d75d60332c02c28f43 https://www.encodeproject.org/files/ENCFF042LWY/@@download/ENCFF042LWY.bam released s3://encode-public/2021/01/06/b55fe821-e9d2-4ae2-9acf-354fb1a67ed1/ENCFF042LWY.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF683ICJ bam bam alignments GRCh38 ENCSR000EAB Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VWH/, /files/ENCFF110MCL/ 323999324 ENCODE Processing Pipeline 28163081c84982bb03a4181a21c16b8a https://www.encodeproject.org/files/ENCFF683ICJ/@@download/ENCFF683ICJ.bam released s3://encode-public/2021/01/06/a1c043d9-940b-4026-9e78-6987ff1b06a0/ENCFF683ICJ.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF498JMO fastq fastq reads ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF502GTS/ 3619450148 Michael Snyder, Stanford 69f7001e8318551bbba51ee2be9acddd SRA:SRR5111896 https://www.encodeproject.org/files/ENCFF498JMO/@@download/ENCFF498JMO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/df3baa71-10e1-4949-91b0-3dc5609151a5/ENCFF498JMO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF502GTS fastq fastq reads ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF498JMO/ 3959902445 Michael Snyder, Stanford 9c4b1a5339784ccab8947dd5567d4cb7 SRA:SRR5111896 https://www.encodeproject.org/files/ENCFF502GTS/@@download/ENCFF502GTS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/22edf845-1986-46f5-b0db-1cf034d71b9a/ENCFF502GTS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF837MIV fastq fastq reads ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF259GQA/ 3800918842 Michael Snyder, Stanford 6e5d6c49b76a77844cbaf5a3a099597b SRA:SRR5111897 https://www.encodeproject.org/files/ENCFF837MIV/@@download/ENCFF837MIV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/b577d8c7-2328-4d59-9031-f440837a4562/ENCFF837MIV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF259GQA fastq fastq reads ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF837MIV/ 3570751835 Michael Snyder, Stanford 924f6440a7879b8fc114a2daf402dd5e SRA:SRR5111897 https://www.encodeproject.org/files/ENCFF259GQA/@@download/ENCFF259GQA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/980a8c01-81ae-45d5-80e6-82d66b861d03/ENCFF259GQA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF799RFR bam bam unfiltered alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF259GQA/, /files/ENCFF837MIV/, /files/ENCFF643CGH/ 6633590306 ENCODE Processing Pipeline 7b68c982048ed020e3569d70f4ed8973 https://www.encodeproject.org/files/ENCFF799RFR/@@download/ENCFF799RFR.bam released s3://encode-public/2016/09/16/18f10c87-1403-4a0e-becf-b70e56e83b3b/ENCFF799RFR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF682IVV bam bam unfiltered alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF498JMO/, /files/ENCFF502GTS/, /files/ENCFF643CGH/ 6690349783 ENCODE Processing Pipeline 820a43c776ef15be8ccd7f595f830c00 https://www.encodeproject.org/files/ENCFF682IVV/@@download/ENCFF682IVV.bam released s3://encode-public/2016/09/16/ee3ca140-6bee-41d2-a3c9-46969cb289a1/ENCFF682IVV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF292ZXW bam bam unfiltered alignments hg19 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF259GQA/, /files/ENCFF807MUK/, /files/ENCFF837MIV/ 6630630342 ENCODE Processing Pipeline d7e246c975026b0da2e67bf8066c915b https://www.encodeproject.org/files/ENCFF292ZXW/@@download/ENCFF292ZXW.bam released s3://encode-public/2016/09/16/bd7d5a38-c350-40cd-9535-26ddd23db163/ENCFF292ZXW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF226LWL bam bam unfiltered alignments hg19 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF498JMO/, /files/ENCFF502GTS/, /files/ENCFF807MUK/ 6687511796 ENCODE Processing Pipeline a197a8f7951783a0e160c1db096db838 https://www.encodeproject.org/files/ENCFF226LWL/@@download/ENCFF226LWL.bam released s3://encode-public/2016/09/16/dd64e823-5dc5-41a9-bea7-70b37c72b4b9/ENCFF226LWL.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF712WXB bam bam alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF259GQA/, /files/ENCFF837MIV/, /files/ENCFF643CGH/ 4629688293 ENCODE Processing Pipeline 4cda36ef774c0d364a7a04910f3ad709 https://www.encodeproject.org/files/ENCFF712WXB/@@download/ENCFF712WXB.bam released s3://encode-public/2016/09/16/3dacb7f8-e332-4635-a586-7be12ed1e959/ENCFF712WXB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF790TAN bam bam alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF498JMO/, /files/ENCFF502GTS/, /files/ENCFF643CGH/ 4545480669 ENCODE Processing Pipeline a7ade9974e1ddec6be9cbc4fe4c27db3 https://www.encodeproject.org/files/ENCFF790TAN/@@download/ENCFF790TAN.bam released s3://encode-public/2016/09/16/1a60c221-96ad-400a-ba13-10bee3f58261/ENCFF790TAN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF160VXC bam bam alignments hg19 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF498JMO/, /files/ENCFF502GTS/, /files/ENCFF807MUK/ 4542748919 ENCODE Processing Pipeline 402cc2d3870e7fb4a37442bc301e116f https://www.encodeproject.org/files/ENCFF160VXC/@@download/ENCFF160VXC.bam released s3://encode-public/2016/09/16/0c9c087a-fbd1-4bef-87a2-6dd850990cba/ENCFF160VXC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF834TUP bam bam alignments hg19 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF259GQA/, /files/ENCFF807MUK/, /files/ENCFF837MIV/ 4625277946 ENCODE Processing Pipeline 021a7a56fe4db48227494fe854809300 https://www.encodeproject.org/files/ENCFF834TUP/@@download/ENCFF834TUP.bam released s3://encode-public/2016/09/16/ed6ebf94-1549-4f0a-b44d-33a285796273/ENCFF834TUP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF729KIJ bam bam unfiltered alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF498JMO/, /files/ENCFF502GTS/ 6709997449 ENCODE Processing Pipeline 8444504cb79d0ca61e0a192a8f9ed27f https://www.encodeproject.org/files/ENCFF729KIJ/@@download/ENCFF729KIJ.bam released s3://encode-public/2020/06/02/e4ad850a-a382-431a-bdbd-b503c721e1b4/ENCFF729KIJ.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF261FQB bam bam unfiltered alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF259GQA/, /files/ENCFF837MIV/ 6645631324 ENCODE Processing Pipeline 915dc19cfb710b21098628ec6093b264 https://www.encodeproject.org/files/ENCFF261FQB/@@download/ENCFF261FQB.bam released s3://encode-public/2020/06/02/b4e97710-3701-4843-9d7c-0337aabe7e2e/ENCFF261FQB.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF735JLB bam bam alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF259GQA/, /files/ENCFF837MIV/ 4530833590 ENCODE Processing Pipeline dc5e0246caff19af27cedee760e9f609 https://www.encodeproject.org/files/ENCFF735JLB/@@download/ENCFF735JLB.bam released s3://encode-public/2020/06/02/a79ef478-8191-43d6-a79e-dcfd48513765/ENCFF735JLB.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF554APQ bam bam alignments GRCh38 ENCSR632PAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF498JMO/, /files/ENCFF502GTS/ 4445507289 ENCODE Processing Pipeline b085988b62fc4cb5df0cecbf09bee656 https://www.encodeproject.org/files/ENCFF554APQ/@@download/ENCFF554APQ.bam released s3://encode-public/2020/06/02/f157ae47-a544-4718-a270-f8df5d60a984/ENCFF554APQ.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF612YLD fastq fastq reads ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF212MYS/ 3115685488 Michael Snyder, Stanford 01ce32b9ecbd5c9db6fb75525c21487a SRA:SRR5111320 https://www.encodeproject.org/files/ENCFF612YLD/@@download/ENCFF612YLD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/b53e08df-8823-4753-8587-7f970c51c423/ENCFF612YLD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF212MYS fastq fastq reads ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF612YLD/ 3177895079 Michael Snyder, Stanford 8163dbe467d39490e63fdce98f3fb290 SRA:SRR5111320 https://www.encodeproject.org/files/ENCFF212MYS/@@download/ENCFF212MYS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/1ce71a4d-f729-4902-8a10-b6e153fa4544/ENCFF212MYS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF936VJO bam bam unfiltered alignments GRCh38 ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF212MYS/, /files/ENCFF612YLD/ 6244097510 ENCODE Processing Pipeline 39aafb738a0c3e39c5238a90eba35df5 https://www.encodeproject.org/files/ENCFF936VJO/@@download/ENCFF936VJO.bam released s3://encode-public/2016/08/13/aa81a3d0-abe1-4f24-b959-c30c82f77144/ENCFF936VJO.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF720PHL bam bam alignments GRCh38 ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF212MYS/, /files/ENCFF612YLD/ 5223217438 ENCODE Processing Pipeline 758fceef846606f4fb5d289b927f53d7 https://www.encodeproject.org/files/ENCFF720PHL/@@download/ENCFF720PHL.bam released s3://encode-public/2016/08/13/71db08a0-3f03-4780-8157-0f7b6145c58d/ENCFF720PHL.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF759XQX bam bam unfiltered alignments hg19 ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF212MYS/, /files/ENCFF612YLD/ 6237677196 ENCODE Processing Pipeline 39b18d84a49972c5e37c5ba949eec662 https://www.encodeproject.org/files/ENCFF759XQX/@@download/ENCFF759XQX.bam released s3://encode-public/2016/09/11/13e7fa7f-da7a-4b05-8282-ffca98241c0a/ENCFF759XQX.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF606FCB bam bam alignments hg19 ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF212MYS/, /files/ENCFF612YLD/ 5221705899 ENCODE Processing Pipeline b741a076bab5d070ee39d497d3b8a417 https://www.encodeproject.org/files/ENCFF606FCB/@@download/ENCFF606FCB.bam released s3://encode-public/2016/09/11/fd9113a3-4d19-4d9f-862c-2fbeacc964af/ENCFF606FCB.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF425NTG bam bam alignments GRCh38 ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF612YLD/, /files/ENCFF212MYS/ 5297102377 ENCODE Processing Pipeline b362ad4d86688ac1688cffad986ab701 https://www.encodeproject.org/files/ENCFF425NTG/@@download/ENCFF425NTG.bam released s3://encode-public/2020/06/02/680d18e9-7ded-415c-8a02-f44dbe3a2d2a/ENCFF425NTG.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF960NLJ bam bam unfiltered alignments GRCh38 ENCSR236FPN Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF612YLD/, /files/ENCFF212MYS/ 6321801088 ENCODE Processing Pipeline 2a5a81310f00c691b64d16b614c53e8f https://www.encodeproject.org/files/ENCFF960NLJ/@@download/ENCFF960NLJ.bam released s3://encode-public/2020/06/02/8ed4650b-8e26-41e8-a038-85f1d2bf81d5/ENCFF960NLJ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF000BNE bam bam alignments hg19 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 1716775431 Bradley Bernstein, Broad 868f22f3a31ffa77ce9165f17a8d8dc7 https://www.encodeproject.org/files/ENCFF000BNE/@@download/ENCFF000BNE.bam archived s3://encode-public/2010/11/16/dd43832a-b867-400a-9b66-2076a60348f0/ENCFF000BNE.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF000BNF bam bam alignments hg19 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000BNO/ 1281724434 Bradley Bernstein, Broad b797d0bf051a4af7d028073424e15f78 https://www.encodeproject.org/files/ENCFF000BNF/@@download/ENCFF000BNF.bam archived s3://encode-public/2010/11/16/f58d24c3-fc73-4186-ab50-e53445067bec/ENCFF000BNF.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF000BNH bigWig bigWig signal hg19 ENCSR000ANT Control ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 830006082 Bradley Bernstein, Broad 523458c2db6152a9d1a5d11931969bbf https://www.encodeproject.org/files/ENCFF000BNH/@@download/ENCFF000BNH.bigWig archived s3://encode-public/2010/11/16/28daf0f4-97e1-400f-a04e-a45473bdff55/ENCFF000BNH.bigWig Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF000BNO fastq fastq reads ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 single-ended 1285552134 Bradley Bernstein, Broad 2f0905df95f188ddd27994d726974dc1 https://www.encodeproject.org/files/ENCFF000BNO/@@download/ENCFF000BNO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/4a1b7dc8-0ed6-41e4-a1d7-d6bc5ab18dc8/ENCFF000BNO.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF000BNR fastq fastq reads ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 single-ended 1701567134 Bradley Bernstein, Broad 4c024da5293e0fd5294332c907eb8df1 https://www.encodeproject.org/files/ENCFF000BNR/@@download/ENCFF000BNR.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2010/11/16/19589114-804a-4afa-be46-ec42bc803240/ENCFF000BNR.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF384SVU bam bam unfiltered alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BNR/ 2306948462 ENCODE Processing Pipeline fc726ebfa88f8dfb61c6306cf82736b7 https://www.encodeproject.org/files/ENCFF384SVU/@@download/ENCFF384SVU.bam released s3://encode-public/2016/08/09/3eccdc2e-6240-4876-995c-1514c534a266/ENCFF384SVU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF742NGM bam bam unfiltered alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000BNO/, /files/ENCFF643CGH/ 1692987131 ENCODE Processing Pipeline 6d3d9a8887b025daea392f6afcedcb50 https://www.encodeproject.org/files/ENCFF742NGM/@@download/ENCFF742NGM.bam released s3://encode-public/2016/08/09/87a7bb21-1ae9-4526-915e-b56112f07421/ENCFF742NGM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF408COK bam bam alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BNR/ 1231899787 ENCODE Processing Pipeline e805d72591dc3bfbc753e570e9112a0d https://www.encodeproject.org/files/ENCFF408COK/@@download/ENCFF408COK.bam released s3://encode-public/2016/08/09/8cdd6735-edc9-4b1a-a1d0-5a737862c0cd/ENCFF408COK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF882RJG bam bam alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000BNO/, /files/ENCFF643CGH/ 913419917 ENCODE Processing Pipeline 4a940adaedb74789d7429051ecdf287c https://www.encodeproject.org/files/ENCFF882RJG/@@download/ENCFF882RJG.bam released s3://encode-public/2016/08/09/1297110c-5add-414d-8828-5a29633f81ca/ENCFF882RJG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF115XVH tagAlign tagAlign alignments hg19 ENCSR000ANT Control ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 203971938 Anshul Kundaje, Stanford d503958c7952472603e282334aa4c0a0 https://www.encodeproject.org/files/ENCFF115XVH/@@download/ENCFF115XVH.tagAlign.gz archived 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/files/ENCFF000BNO/, /files/ENCFF807MUK/ 913603041 ENCODE Processing Pipeline 2ba99108de070c682ad91ba7584072e5 https://www.encodeproject.org/files/ENCFF900ZEG/@@download/ENCFF900ZEG.bam released s3://encode-public/2017/04/06/c19c0cde-ce24-47f3-857f-c4a9f84057ac/ENCFF900ZEG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF695JTM bam bam unfiltered alignments hg19 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BNR/ 2295749510 ENCODE Processing Pipeline 9960e596e2b5d496ef300dbd026a09bb https://www.encodeproject.org/files/ENCFF695JTM/@@download/ENCFF695JTM.bam released s3://encode-public/2017/04/07/2785627d-96cc-47be-9cbd-66a0c8c0b3cb/ENCFF695JTM.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF559IIB bam bam alignments hg19 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BNR/ 1232187391 ENCODE Processing Pipeline 566fbf2587038ec32454426be48671a4 https://www.encodeproject.org/files/ENCFF559IIB/@@download/ENCFF559IIB.bam released s3://encode-public/2017/04/07/1d4d02e3-22ca-4f2e-a6d9-0aeba8f9dfd1/ENCFF559IIB.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF180ALL fastq fastq reads ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 258080870 Bradley Bernstein, Broad a74370c67a224f77d4c12bd457c75b9a https://www.encodeproject.org/files/ENCFF180ALL/@@download/ENCFF180ALL.fastq.gz Illumina HiSeq 2000 archived 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https://www.encodeproject.org/files/ENCFF873IRA/@@download/ENCFF873IRA.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/26/e2997457-3a90-49cf-944e-beef9d066961/ENCFF873IRA.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF512CVC fastq fastq reads ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 251455202 Bradley Bernstein, Broad b640a1b05eb7b7ccdf63fae1da72f0b7 https://www.encodeproject.org/files/ENCFF512CVC/@@download/ENCFF512CVC.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/26/a92fa71c-fd9b-4475-bf52-594c9cda1c8e/ENCFF512CVC.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF770RXR bam bam alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000BNR/ 1353356757 ENCODE Processing Pipeline 91e29208e081bd84731157d0e9d13505 https://www.encodeproject.org/files/ENCFF770RXR/@@download/ENCFF770RXR.bam released s3://encode-public/2020/09/03/c46387e1-27af-4194-b7f7-76587c7a7ae4/ENCFF770RXR.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF111LFY bam bam unfiltered alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000BNR/ 2267356040 ENCODE Processing Pipeline dfa1e65a1fadcce8693eac3cb6b33d4a https://www.encodeproject.org/files/ENCFF111LFY/@@download/ENCFF111LFY.bam released s3://encode-public/2020/09/03/a8cb4020-bab0-4d9e-bf2e-9a47dc06f844/ENCFF111LFY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF758TPU bam bam unfiltered alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000BNO/ 1651798273 ENCODE Processing Pipeline a34658a574fa2fe87429372f98f27b29 https://www.encodeproject.org/files/ENCFF758TPU/@@download/ENCFF758TPU.bam released s3://encode-public/2020/09/03/b4e3cb11-65c7-4dd6-8e34-f70e5a33ac8b/ENCFF758TPU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF853VRC bam bam alignments GRCh38 ENCSR000ANT Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0002372 myotube in vitro differentiated cells Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000BNO/ 991698135 ENCODE Processing Pipeline 28d305d4e2166ea082648fa0008af565 https://www.encodeproject.org/files/ENCFF853VRC/@@download/ENCFF853VRC.bam released s3://encode-public/2020/09/03/588d2d26-8bf0-4005-abe8-e0bb1037f2f6/ENCFF853VRC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF660NMB fastq fastq reads ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 63616092 Kevin White, UChicago 9558e01de782e3d7874459c75a1b5b4a https://www.encodeproject.org/files/ENCFF660NMB/@@download/ENCFF660NMB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/21/a0928000-3bad-4f89-958f-b845fe4785df/ENCFF660NMB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF780IED fastq fastq reads ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1370045585 Kevin White, UChicago 86cea9e64827213ebba65e8177eea884 https://www.encodeproject.org/files/ENCFF780IED/@@download/ENCFF780IED.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/21/929fbe3f-795c-4564-9fbd-c0a0907cb364/ENCFF780IED.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF769KHF bam bam alignments dm3 ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF660NMB/, /files/ENCFF780IED/, /files/ENCFF059UHX/ 1956274767 Kevin White, UChicago b291018d39029225977993dd6e6eb95f https://www.encodeproject.org/files/ENCFF769KHF/@@download/ENCFF769KHF.bam released s3://encode-public/2016/12/24/990ced7e-5756-4057-8f46-4a48c53658aa/ENCFF769KHF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF913MJY bam bam alignments dm6 ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF660NMB/, /files/ENCFF780IED/, /files/ENCFF479RCH/ 1942301016 Kevin White, UChicago 001efb2ec9fd4f0a9e888cbc5fed67a5 https://www.encodeproject.org/files/ENCFF913MJY/@@download/ENCFF913MJY.bam released s3://encode-public/2016/12/24/a3dd9969-df84-42d5-b605-f9d5bd1b6a78/ENCFF913MJY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF894PSF bigWig bigWig signal of unique reads dm3 ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF769KHF/ 15662521 Kevin White, UChicago 9452918df29e2dfb66e5d7b6abf804ce https://www.encodeproject.org/files/ENCFF894PSF/@@download/ENCFF894PSF.bigWig released s3://encode-public/2017/01/03/d18b038a-449d-4ad4-ae67-87238e31eef9/ENCFF894PSF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF735SDY bigWig bigWig read-depth normalized signal dm3 ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF769KHF/ 15609060 Kevin White, UChicago 04a4fc45a7b1a00b2a524f9c4bef70ed https://www.encodeproject.org/files/ENCFF735SDY/@@download/ENCFF735SDY.bigWig released s3://encode-public/2017/01/03/63349fd9-312a-49c1-8942-37325a6a9a94/ENCFF735SDY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF059RBR bigWig bigWig read-depth normalized signal dm6 ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF913MJY/ 17650711 Kevin White, UChicago 3e29cc85ebd44832bff120d15fbec036 https://www.encodeproject.org/files/ENCFF059RBR/@@download/ENCFF059RBR.bigWig released s3://encode-public/2017/01/04/5c730495-1d38-42e5-bee9-752e5982e484/ENCFF059RBR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF258KJA bigWig bigWig signal of unique reads dm6 ENCSR499HRQ Control ChIP-seq /fly-donors/ENCDO377VWM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38717/'], '@type': ['Target', 'Item'], 'name': 'D19B-dmelanogaster', 'label': 'D19B', '@id': '/targets/D19B-dmelanogaster/', 'title': 'D19B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5ba044b3-f6ed-49c5-b43a-fa63d1c27178', 'status': 'released'} dm3 3L 6165671 6187190 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF913MJY/ 17735569 Kevin White, UChicago 6d9abe21f8053d10b0ff09788a693ed6 https://www.encodeproject.org/files/ENCFF258KJA/@@download/ENCFF258KJA.bigWig released s3://encode-public/2017/01/04/ae6a4800-eab2-4912-ba0a-f25598b033b1/ENCFF258KJA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000SCX bam bam alignments hg19 ENCSR000DNE Control ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 35 1179083871 Vishwanath Iyer, UTA b2b0615289bd62fd19ac48687a773199 https://www.encodeproject.org/files/ENCFF000SCX/@@download/ENCFF000SCX.bam archived s3://encode-public/2012/07/26/ae36901e-bff3-43e9-a0c7-8f8ffdc0c9b1/ENCFF000SCX.bam Lab custom hg19 archived insufficient read depth ENCFF000SCY bigWig bigWig signal hg19 ENCSR000DNE Control ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 4850399922 Vishwanath Iyer, UTA 06e0597fbb1f21d23b166f13d444df9f https://www.encodeproject.org/files/ENCFF000SCY/@@download/ENCFF000SCY.bigWig archived s3://encode-public/2012/07/26/26afde7f-949e-4d90-8b2a-755a3acd210d/ENCFF000SCY.bigWig Lab custom hg19 archived insufficient read depth ENCFF000SDU fastq fastq reads ENCSR000DNE Control ChIP-seq /human-donors/ENCDO316AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 1392284444 Vishwanath Iyer, UTA 60338db24c818b8a01a5d096150d2649 https://www.encodeproject.org/files/ENCFF000SDU/@@download/ENCFF000SDU.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/d8cab0d8-5842-49ee-b93a-fabafa931776/ENCFF000SDU.fastq.gz insufficient read depth ENCFF056YDV bam bam unfiltered alignments GRCh38 ENCSR000DNE Control ChIP-seq /human-donors/ENCDO316AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000SDU/ 1616888439 ENCODE Processing Pipeline 1eea70b915a20baf8cad40238a357ca1 https://www.encodeproject.org/files/ENCFF056YDV/@@download/ENCFF056YDV.bam released s3://encode-public/2017/04/14/912e774e-93e0-41f4-bc96-c3575d4cd578/ENCFF056YDV.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF689XBW bam bam alignments GRCh38 ENCSR000DNE Control ChIP-seq /human-donors/ENCDO316AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000SDU/ 677790054 ENCODE Processing Pipeline ed7f9f27a824d1bfd1ea75a82cc55ac5 https://www.encodeproject.org/files/ENCFF689XBW/@@download/ENCFF689XBW.bam released s3://encode-public/2017/04/14/b08cf7fd-a236-4fcf-be2c-7b52bcd0c025/ENCFF689XBW.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF600TOQ bam bam unfiltered alignments hg19 ENCSR000DNE Control ChIP-seq /human-donors/ENCDO316AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000SDU/ 1613511926 ENCODE Processing Pipeline 8ea0c1b452b1ae41df5410656e0f91c2 https://www.encodeproject.org/files/ENCFF600TOQ/@@download/ENCFF600TOQ.bam released s3://encode-public/2017/04/14/7f263cbc-6a94-451f-8c89-8bd556da87b0/ENCFF600TOQ.bam ENCODE3 hg19 archived insufficient read depth ENCFF781XST bam bam alignments hg19 ENCSR000DNE Control ChIP-seq /human-donors/ENCDO316AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000SDU/ 677719474 ENCODE Processing Pipeline 98e0846652f22b9c1d933ea6eea7a9d2 https://www.encodeproject.org/files/ENCFF781XST/@@download/ENCFF781XST.bam released s3://encode-public/2017/04/14/9b1141c8-553d-462b-bcfb-964955a515c4/ENCFF781XST.bam ENCODE3 hg19 archived insufficient read depth ENCFF240LXT bam bam alignments GRCh38 ENCSR000DNE Control ChIP-seq /human-donors/ENCDO316AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000SDU/ 625746870 ENCODE Processing Pipeline 584875f1b7d6c75e23c15bf9b16d2d60 https://www.encodeproject.org/files/ENCFF240LXT/@@download/ENCFF240LXT.bam released s3://encode-public/2020/09/03/816d49eb-3e4a-42cd-89f9-1b0c52cea648/ENCFF240LXT.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF123QNT bam bam unfiltered alignments GRCh38 ENCSR000DNE Control ChIP-seq /human-donors/ENCDO316AAA/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000SDU/ 1655041042 ENCODE Processing Pipeline d1d64926d235715584ec688cce4bdc37 https://www.encodeproject.org/files/ENCFF123QNT/@@download/ENCFF123QNT.bam released s3://encode-public/2020/09/03/056118ed-3d9f-40b4-ab6c-14d610e2efbd/ENCFF123QNT.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF092BBO fastq fastq reads ENCSR541KJI Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 753032094 Kevin White, UChicago 2b03a190db2e67500f2bfb68c3088de7 https://www.encodeproject.org/files/ENCFF092BBO/@@download/ENCFF092BBO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/019cdd2b-efb7-4158-996b-e799b200025b/ENCFF092BBO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF431VPM bam bam alignments dm3 ENCSR541KJI Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF092BBO/, /files/ENCFF059UHX/ 1004454104 Kevin White, UChicago 503aeda34a6ee174e857e2380ba0e754 https://www.encodeproject.org/files/ENCFF431VPM/@@download/ENCFF431VPM.bam released s3://encode-public/2016/12/21/667edd5e-ea08-4b89-9328-8f6d010689ef/ENCFF431VPM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF247IWY bam bam alignments dm6 ENCSR541KJI Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF092BBO/, /files/ENCFF479RCH/ 999411546 Kevin White, UChicago 5b038dd3fa7a9deaf12bdc0757bdcb82 https://www.encodeproject.org/files/ENCFF247IWY/@@download/ENCFF247IWY.bam released s3://encode-public/2016/12/21/b95b7f34-e6e1-43d3-bfdf-5460467bb8d3/ENCFF247IWY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF667DXU bigWig bigWig read-depth normalized signal dm3 ENCSR541KJI Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF431VPM/ 15372214 Kevin White, UChicago 6f3cb6f752be473ba475090250716e62 https://www.encodeproject.org/files/ENCFF667DXU/@@download/ENCFF667DXU.bigWig released s3://encode-public/2017/01/04/9eff8f20-cde5-4804-a28f-c803be7133d7/ENCFF667DXU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF138UAY bigWig bigWig signal of unique reads dm6 ENCSR541KJI Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF247IWY/ 17425923 Kevin White, UChicago ef5680c915dbfd95052a9e4f2934832d https://www.encodeproject.org/files/ENCFF138UAY/@@download/ENCFF138UAY.bigWig released s3://encode-public/2017/01/04/cb2a5cb2-ad58-4915-83b3-c38349030876/ENCFF138UAY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF011HDT bigWig bigWig signal of unique reads dm3 ENCSR541KJI Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF431VPM/ 15366368 Kevin White, UChicago 1bb457fb7c7c33f90bb09e6c5619bed0 https://www.encodeproject.org/files/ENCFF011HDT/@@download/ENCFF011HDT.bigWig released s3://encode-public/2017/01/04/110912db-e6d8-4525-8b1c-d00757c8c6cb/ENCFF011HDT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF114BMX bigWig bigWig read-depth normalized signal dm6 ENCSR541KJI Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF247IWY/ 17432866 Kevin White, UChicago db4ae687ff50db761448820345c9d14d https://www.encodeproject.org/files/ENCFF114BMX/@@download/ENCFF114BMX.bigWig released s3://encode-public/2017/01/04/ca303400-9c63-42bc-a71c-1805b43c4ffb/ENCFF114BMX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF611EQK fastq fastq reads ENCSR674PHY Control ChIP-seq /fly-donors/ENCDO134JWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40830/'], '@type': ['Target', 'Item'], 'name': 'bcd-dmelanogaster', 'label': 'bcd', '@id': '/targets/bcd-dmelanogaster/', 'title': 'bcd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60cd5fce-4dde-4648-b293-e91926063c1c', 'status': 'released'} dm3 3R 2571191 2589642 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1485055591 Kevin White, UChicago b856e1fec447bebd317b2a9f68cb8fd3 https://www.encodeproject.org/files/ENCFF611EQK/@@download/ENCFF611EQK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/400723f3-4e82-4945-b600-f29b61744772/ENCFF611EQK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF502RAH bam bam alignments dm3 ENCSR674PHY Control ChIP-seq /fly-donors/ENCDO134JWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40830/'], '@type': ['Target', 'Item'], 'name': 'bcd-dmelanogaster', 'label': 'bcd', '@id': '/targets/bcd-dmelanogaster/', 'title': 'bcd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60cd5fce-4dde-4648-b293-e91926063c1c', 'status': 'released'} dm3 3R 2571191 2589642 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF611EQK/, /files/ENCFF059UHX/ 2047762581 Kevin White, UChicago 91281b0df475d5464167180f34b643d8 https://www.encodeproject.org/files/ENCFF502RAH/@@download/ENCFF502RAH.bam released s3://encode-public/2016/12/21/a6f55882-764d-4be3-af66-6299945ed962/ENCFF502RAH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF178BQV bam bam alignments dm6 ENCSR674PHY Control ChIP-seq /fly-donors/ENCDO134JWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40830/'], '@type': ['Target', 'Item'], 'name': 'bcd-dmelanogaster', 'label': 'bcd', '@id': '/targets/bcd-dmelanogaster/', 'title': 'bcd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60cd5fce-4dde-4648-b293-e91926063c1c', 'status': 'released'} dm3 3R 2571191 2589642 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF611EQK/, /files/ENCFF479RCH/ 2036461943 Kevin White, UChicago 68a990afb4c657ff3a0c0df80720f272 https://www.encodeproject.org/files/ENCFF178BQV/@@download/ENCFF178BQV.bam released s3://encode-public/2016/12/21/7a6d7ecd-6b80-40a6-8664-5032c3bab9c1/ENCFF178BQV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF030KEC bigWig bigWig read-depth normalized signal dm3 ENCSR674PHY Control ChIP-seq /fly-donors/ENCDO134JWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40830/'], '@type': ['Target', 'Item'], 'name': 'bcd-dmelanogaster', 'label': 'bcd', '@id': '/targets/bcd-dmelanogaster/', 'title': 'bcd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60cd5fce-4dde-4648-b293-e91926063c1c', 'status': 'released'} dm3 3R 2571191 2589642 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF502RAH/ 15606736 Kevin White, UChicago a68e25dbe0bd24cb2859b1996db62530 https://www.encodeproject.org/files/ENCFF030KEC/@@download/ENCFF030KEC.bigWig released s3://encode-public/2017/01/03/c94b9426-470c-4827-833b-71dd715fa60e/ENCFF030KEC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF187ZMI bigWig bigWig signal of unique reads dm3 ENCSR674PHY Control ChIP-seq /fly-donors/ENCDO134JWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40830/'], '@type': ['Target', 'Item'], 'name': 'bcd-dmelanogaster', 'label': 'bcd', '@id': '/targets/bcd-dmelanogaster/', 'title': 'bcd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60cd5fce-4dde-4648-b293-e91926063c1c', 'status': 'released'} dm3 3R 2571191 2589642 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF502RAH/ 15618098 Kevin White, UChicago 7d4c1479a791dcc89149d8ec5ba34d19 https://www.encodeproject.org/files/ENCFF187ZMI/@@download/ENCFF187ZMI.bigWig released s3://encode-public/2017/01/03/af315f22-edd4-4329-bb9d-dacdcb9b524d/ENCFF187ZMI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF539MEY bigWig bigWig read-depth normalized signal dm6 ENCSR674PHY Control ChIP-seq /fly-donors/ENCDO134JWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40830/'], '@type': ['Target', 'Item'], 'name': 'bcd-dmelanogaster', 'label': 'bcd', '@id': '/targets/bcd-dmelanogaster/', 'title': 'bcd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60cd5fce-4dde-4648-b293-e91926063c1c', 'status': 'released'} dm3 3R 2571191 2589642 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF178BQV/ 17651761 Kevin White, UChicago 52da985eb51d5834e69bd44d0149e27a https://www.encodeproject.org/files/ENCFF539MEY/@@download/ENCFF539MEY.bigWig released s3://encode-public/2017/01/03/0fa577b9-1022-48dd-a9b2-a6ba8d871ea2/ENCFF539MEY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF813CPT bigWig bigWig signal of unique reads dm6 ENCSR674PHY Control ChIP-seq /fly-donors/ENCDO134JWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40830/'], '@type': ['Target', 'Item'], 'name': 'bcd-dmelanogaster', 'label': 'bcd', '@id': '/targets/bcd-dmelanogaster/', 'title': 'bcd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60cd5fce-4dde-4648-b293-e91926063c1c', 'status': 'released'} dm3 3R 2571191 2589642 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF178BQV/ 17694011 Kevin White, UChicago 981714de6934911d9b0cf593618f2089 https://www.encodeproject.org/files/ENCFF813CPT/@@download/ENCFF813CPT.bigWig released s3://encode-public/2017/01/03/467b43ee-aa70-47f6-8182-47cd7fdda7a5/ENCFF813CPT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF766JFK fastq fastq reads ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF826BIL/ 3111184172 Richard Myers, HAIB 944459ff4fbc49bbc67fffc19fca139f SRA:SRR6214152 https://www.encodeproject.org/files/ENCFF766JFK/@@download/ENCFF766JFK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/c8c61924-1283-4830-863d-cc9e1d0647b6/ENCFF766JFK.fastq.gz ENCFF826BIL fastq fastq reads ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF766JFK/ 3262561951 Richard Myers, HAIB b7f15866fed46fe1cb3359eb9ae840ad SRA:SRR6214152 https://www.encodeproject.org/files/ENCFF826BIL/@@download/ENCFF826BIL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/a9c463a6-233f-4c4f-ae99-468022c9dd1e/ENCFF826BIL.fastq.gz ENCFF850IKG bam bam alignments hg19 ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF766JFK/, /files/ENCFF826BIL/ 5327715776 ENCODE Processing Pipeline 689db5816c7611ee932721de4238834c https://www.encodeproject.org/files/ENCFF850IKG/@@download/ENCFF850IKG.bam released s3://encode-public/2017/02/02/593dcc8c-4959-497f-a7c4-3b5e71e43967/ENCFF850IKG.bam ENCODE3 hg19 archived ENCFF746RVK bam bam unfiltered alignments hg19 ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF766JFK/, /files/ENCFF826BIL/ 7502809512 ENCODE Processing Pipeline 25cd6d2e816eb2d3bed0254cb1e2aa8f https://www.encodeproject.org/files/ENCFF746RVK/@@download/ENCFF746RVK.bam released s3://encode-public/2017/02/02/ad419735-fd3d-4adf-a27d-516b2797b7ba/ENCFF746RVK.bam ENCODE3 hg19 archived ENCFF934MHZ bam bam unfiltered alignments GRCh38 ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF766JFK/, /files/ENCFF826BIL/ 7535473463 ENCODE Processing Pipeline a15139b7266e44722337a05d98e346d0 https://www.encodeproject.org/files/ENCFF934MHZ/@@download/ENCFF934MHZ.bam released s3://encode-public/2017/02/02/a6d0c1d2-b223-4076-a262-4c4fc7b57464/ENCFF934MHZ.bam ENCODE3 GRCh38 archived ENCFF800SVM bam bam alignments GRCh38 ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF766JFK/, /files/ENCFF826BIL/ 5336094245 ENCODE Processing Pipeline ed757b950d18f845088b2a34923ded93 https://www.encodeproject.org/files/ENCFF800SVM/@@download/ENCFF800SVM.bam released s3://encode-public/2017/02/02/253c430f-eef0-4483-b77a-a98e1cc001e5/ENCFF800SVM.bam ENCODE3 GRCh38 archived ENCFF704DWK bam bam unfiltered alignments GRCh38 ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF766JFK/, /files/ENCFF826BIL/ 7544986967 ENCODE Processing Pipeline 5630f490b258157d2a5fd5bf76f85d00 https://www.encodeproject.org/files/ENCFF704DWK/@@download/ENCFF704DWK.bam released s3://encode-public/2020/06/06/205a434c-e7f2-4421-9866-023284686dfa/ENCFF704DWK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF788UKJ bam bam alignments GRCh38 ENCSR846VRM Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF766JFK/, /files/ENCFF826BIL/ 5067028157 ENCODE Processing Pipeline 406443433056bad7bc185082b3138af9 https://www.encodeproject.org/files/ENCFF788UKJ/@@download/ENCFF788UKJ.bam released s3://encode-public/2020/06/06/14651477-aef6-4aba-bd32-afdf21d9e84e/ENCFF788UKJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF354JIA tagAlign tagAlign alignments hg19 ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF388BUX/ 238913191 Anshul Kundaje, Stanford e008b39ab97782e6f021ec0be441f903 https://www.encodeproject.org/files/ENCFF354JIA/@@download/ENCFF354JIA.tagAlign.gz archived s3://encode-public/2016/03/30/c0759ee3-a8e5-4eb1-b9f9-3c5478f1c82a/ENCFF354JIA.tagAlign.gz low read length ENCFF388BUX fastq fastq reads ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1849396493 Zhiping Weng, UMass 60b81e2dd51034cdd069e0cd4c99e2f5 SRA:SRR1067507, SRA:SRR7890341 https://www.encodeproject.org/files/ENCFF388BUX/@@download/ENCFF388BUX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/22/2d8c3f16-7726-40fa-a0fe-aa40430562ea/ENCFF388BUX.fastq.gz low read length ENCFF094LBR bam bam unfiltered alignments hg19 ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF388BUX/ 2131715351 ENCODE Processing Pipeline 3ef4abaf7101e9be6b8018142b607da3 https://www.encodeproject.org/files/ENCFF094LBR/@@download/ENCFF094LBR.bam released s3://encode-public/2016/12/19/76151c51-bc2f-4761-aa31-47b847474c98/ENCFF094LBR.bam ENCODE3 hg19 archived low read length ENCFF359JQU bam bam unfiltered alignments GRCh38 ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF388BUX/ 2145186911 ENCODE Processing Pipeline c0df79ccfd993aa1e603bae081a9f5d0 https://www.encodeproject.org/files/ENCFF359JQU/@@download/ENCFF359JQU.bam released s3://encode-public/2016/12/19/91308f46-9e30-4d32-9009-7d1af8958759/ENCFF359JQU.bam ENCODE3 GRCh38 archived low read length ENCFF763KIU bam bam alignments hg19 ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF388BUX/ 1508239720 ENCODE Processing Pipeline 4d0c0d2009f876eea7fe176e55428b09 https://www.encodeproject.org/files/ENCFF763KIU/@@download/ENCFF763KIU.bam released s3://encode-public/2016/12/19/9aa9b875-5e5a-4770-a23c-6c8604580e91/ENCFF763KIU.bam ENCODE3 hg19 archived low read length ENCFF562SIS bam bam alignments GRCh38 ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF388BUX/ 1507872059 ENCODE Processing Pipeline 0a278c9835d2790f6eeafa754f9645ae https://www.encodeproject.org/files/ENCFF562SIS/@@download/ENCFF562SIS.bam released s3://encode-public/2016/12/19/54e093ba-a442-4853-a3b2-ce36a0269161/ENCFF562SIS.bam ENCODE3 GRCh38 archived low read length ENCFF376MXK bam bam unfiltered alignments GRCh38 ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF388BUX/, /files/ENCFF110MCL/ 2090924319 ENCODE Processing Pipeline ab7e68d379f5dfd9fdba1eb5d424ce99 https://www.encodeproject.org/files/ENCFF376MXK/@@download/ENCFF376MXK.bam released s3://encode-public/2020/08/06/9653931b-c474-4402-b05d-b562447dcfcc/ENCFF376MXK.bam ENCODE4 GRCh38 released low read length ENCFF859BWX bam bam alignments GRCh38 ENCSR254NDP Control ChIP-seq /human-donors/ENCDO370HUJ/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF388BUX/, /files/ENCFF110MCL/ 1627417245 ENCODE Processing Pipeline 077cad122c006cafe815588b46476ca4 https://www.encodeproject.org/files/ENCFF859BWX/@@download/ENCFF859BWX.bam released s3://encode-public/2020/08/06/19e4fb0e-5f68-4946-a656-1a6b8b9430bc/ENCFF859BWX.bam ENCODE4 GRCh38 released low read length ENCFF661WIT tagAlign tagAlign alignments hg19 ENCSR651GQQ Control ChIP-seq CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 234974161 Anshul Kundaje, Stanford 7e544004ce026e2cd684b676a1766581 https://www.encodeproject.org/files/ENCFF661WIT/@@download/ENCFF661WIT.tagAlign.gz archived s3://encode-public/2016/03/30/7b869188-125b-4026-a106-5986d71077b9/ENCFF661WIT.tagAlign.gz Lab custom hg19 released inconsistent ontology term ENCFF000RSK bam bam alignments hg19 ENCSR000DLL Control ChIP-seq UBERON:0000948 heart tissue Homo sapiens DNA 2012-08-27 ENCODE see document 35 1040783225 Vishwanath Iyer, UTA 1b8a18558b3bf24e48e644178f05efc6 https://www.encodeproject.org/files/ENCFF000RSK/@@download/ENCFF000RSK.bam archived s3://encode-public/2012/07/26/c2992233-4d96-447a-b9bb-f8f9bf138e5f/ENCFF000RSK.bam Lab custom hg19 released ENCFF000RSL bigWig bigWig signal hg19 ENCSR000DLL Control ChIP-seq UBERON:0000948 heart tissue Homo sapiens DNA 2012-08-27 ENCODE see document 4718590499 Vishwanath Iyer, UTA 4278fc3e1a97afa21e4e88bc59a0ad7c https://www.encodeproject.org/files/ENCFF000RSL/@@download/ENCFF000RSL.bigWig archived s3://encode-public/2012/07/26/eaebb446-d3bb-4014-b452-aea68879a0d6/ENCFF000RSL.bigWig Lab custom hg19 released ENCFF000RUA fastq fastq reads ENCSR000DLL Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0000948 heart tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 1513308970 Vishwanath Iyer, UTA 7575c9c29fcae62309b8f4905ae38a77 https://www.encodeproject.org/files/ENCFF000RUA/@@download/ENCFF000RUA.fastq.gz Illumina Genome Analyzer archived s3://encode-public/2012/07/26/9631c710-2e03-4cc7-97b5-29804faf62b3/ENCFF000RUA.fastq.gz ENCFF009OKE fastq fastq reads ENCSR716YEJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4488/'], '@type': ['Target', 'Item'], 'name': 'MSX2-human', 'label': 'MSX2', '@id': '/targets/MSX2-human/', 'title': 'MSX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d248124-d619-4834-a7a6-55823089766e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF306SAG/ 2244515621 Michael Snyder, Stanford 942ef935e1bb80dd267e94793a2cb7a2 SRA:SRR14103171 https://www.encodeproject.org/files/ENCFF009OKE/@@download/ENCFF009OKE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/aeb78367-6d41-4a50-a6c3-0c6fb73abc98/ENCFF009OKE.fastq.gz mild to moderate bottlenecking ENCFF306SAG fastq fastq reads ENCSR716YEJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4488/'], '@type': ['Target', 'Item'], 'name': 'MSX2-human', 'label': 'MSX2', '@id': '/targets/MSX2-human/', 'title': 'MSX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d248124-d619-4834-a7a6-55823089766e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF009OKE/ 2393292751 Michael Snyder, Stanford 5c257e54c913be0fe5f7cee46324aeb6 SRA:SRR14103171 https://www.encodeproject.org/files/ENCFF306SAG/@@download/ENCFF306SAG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/3a369dbf-8440-4f70-ba0d-574b3e52ab2a/ENCFF306SAG.fastq.gz mild to moderate bottlenecking ENCFF508ZOF bam bam unfiltered alignments GRCh38 ENCSR716YEJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4488/'], '@type': ['Target', 'Item'], 'name': 'MSX2-human', 'label': 'MSX2', '@id': '/targets/MSX2-human/', 'title': 'MSX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d248124-d619-4834-a7a6-55823089766e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF009OKE/, /files/ENCFF306SAG/ 4471396562 ENCODE Processing Pipeline b2dea79bc9a3694b818a0b244a065e5d https://www.encodeproject.org/files/ENCFF508ZOF/@@download/ENCFF508ZOF.bam released s3://encode-public/2020/04/21/0d9cd3ef-592b-412c-961e-8d6d2613fb49/ENCFF508ZOF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF170ZIL bam bam alignments GRCh38 ENCSR716YEJ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4488/'], '@type': ['Target', 'Item'], 'name': 'MSX2-human', 'label': 'MSX2', '@id': '/targets/MSX2-human/', 'title': 'MSX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d248124-d619-4834-a7a6-55823089766e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF009OKE/, /files/ENCFF306SAG/ 3461926172 ENCODE Processing Pipeline 554d1751630d116a3b71978961bdda49 https://www.encodeproject.org/files/ENCFF170ZIL/@@download/ENCFF170ZIL.bam released s3://encode-public/2020/04/21/e232bb1a-d516-47c3-ab5d-920bb063eff7/ENCFF170ZIL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF000NFJ bam bam alignments hg19 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFR/ 949707571 Richard Myers, HAIB 58a3ff4bf50449401c96e2e6d0b3828a https://www.encodeproject.org/files/ENCFF000NFJ/@@download/ENCFF000NFJ.bam archived s3://encode-public/2012/01/23/4b86af89-9a17-40a0-b8ac-8fcda1dbb6a5/ENCFF000NFJ.bam Lab custom hg19 archived low read depth, low read length ENCFF000NFK bigWig bigWig raw signal hg19 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 10924090 Richard Myers, HAIB 802c97d600d30cb072f1bffd297c2568 https://www.encodeproject.org/files/ENCFF000NFK/@@download/ENCFF000NFK.bigWig archived s3://encode-public/2012/01/23/346c8dc2-f72e-4ccc-9e3b-5e07120edb34/ENCFF000NFK.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000NFR fastq fastq reads ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1001919665 Richard Myers, HAIB a17824f847a493af36c7830b679e38d7 https://www.encodeproject.org/files/ENCFF000NFR/@@download/ENCFF000NFR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/4995fb5c-025e-4093-a9a1-ba7988a97d77/ENCFF000NFR.fastq.gz low read depth, low read length ENCFF479FDR bam bam unfiltered alignments GRCh38 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFR/, /files/ENCFF643CGH/ 1318026148 ENCODE Processing Pipeline 6bc8d9226bf39163f0d8429c52d8e04b https://www.encodeproject.org/files/ENCFF479FDR/@@download/ENCFF479FDR.bam released s3://encode-public/2016/10/26/a9eb4efb-7d6e-4dc0-abdd-5bb37b4f1eff/ENCFF479FDR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF353UFN bam bam alignments GRCh38 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFR/, /files/ENCFF643CGH/ 694500764 ENCODE Processing Pipeline 8ed668b808e5d7406185b77c1dd72cae https://www.encodeproject.org/files/ENCFF353UFN/@@download/ENCFF353UFN.bam released s3://encode-public/2016/10/26/acca63ab-a23b-4bf3-ae41-e4b4bc52cfe7/ENCFF353UFN.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF692IRB bam bam alignments hg19 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFR/, /files/ENCFF807MUK/ 694601014 ENCODE Processing Pipeline b8dbaf8c962b60534f9688b4576dd9fa https://www.encodeproject.org/files/ENCFF692IRB/@@download/ENCFF692IRB.bam released s3://encode-public/2016/11/13/f6e97da2-8cb1-470a-bba9-2b8a6518e62d/ENCFF692IRB.bam ENCODE3 hg19 archived low read depth, low read length ENCFF903IXK bam bam unfiltered alignments hg19 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFR/, /files/ENCFF807MUK/ 1313060916 ENCODE Processing Pipeline b6de0f76bcbd971b069e5dd15de21058 https://www.encodeproject.org/files/ENCFF903IXK/@@download/ENCFF903IXK.bam released s3://encode-public/2016/11/13/1f06f0fc-7a76-4b5a-959b-a2eabbddf6e8/ENCFF903IXK.bam ENCODE3 hg19 archived low read depth, low read length ENCFF661TNT bam bam unfiltered alignments GRCh38 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NFR/ 1300216723 ENCODE Processing Pipeline a5428772b6c866ac52a2d7668ef15053 https://www.encodeproject.org/files/ENCFF661TNT/@@download/ENCFF661TNT.bam released s3://encode-public/2020/09/03/403b9236-4269-4d10-bf2b-4a3ff4087966/ENCFF661TNT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF155OFY bam bam alignments GRCh38 ENCSR000BNC Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NFR/ 754879908 ENCODE Processing Pipeline 778d7481148bc4eaf469db864eeeb43e https://www.encodeproject.org/files/ENCFF155OFY/@@download/ENCFF155OFY.bam released s3://encode-public/2020/09/03/cd93382f-f9a3-40eb-bdfe-89ce8480ddc1/ENCFF155OFY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF305BJB fastq fastq reads ENCSR357JFV Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1223707299 Kevin White, UChicago 716f68488d88d02cd07134db3428255b https://www.encodeproject.org/files/ENCFF305BJB/@@download/ENCFF305BJB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/990f443e-0027-42ff-b272-39a958dc93d6/ENCFF305BJB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF596GXB bam bam alignments dm6 ENCSR357JFV Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF305BJB/, /files/ENCFF479RCH/ 1636689262 Kevin White, UChicago 10aac6841beb63a2e0cec7a1380fc0ec https://www.encodeproject.org/files/ENCFF596GXB/@@download/ENCFF596GXB.bam released s3://encode-public/2019/04/13/5db05a04-946a-44d1-836b-89f1c9438c8f/ENCFF596GXB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF007NKA bigWig bigWig read-depth normalized signal dm6 ENCSR357JFV Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF596GXB/ 17698759 Kevin White, UChicago e1167214005056c15e94187790289606 https://www.encodeproject.org/files/ENCFF007NKA/@@download/ENCFF007NKA.bigWig released s3://encode-public/2019/04/16/baa750b4-febb-4b69-9f63-6655591a3051/ENCFF007NKA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF936XVR bigWig bigWig signal of unique reads dm6 ENCSR357JFV Control ChIP-seq /fly-donors/ENCDO173NRQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39962/'], '@type': ['Target', 'Item'], 'name': 'Eip74EF-dmelanogaster', 'label': 'Eip74EF', '@id': '/targets/Eip74EF-dmelanogaster/', 'title': 'Eip74EF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1b4bf78f-e4be-4693-8d3b-49bdf71b4422', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF596GXB/ 17777360 Kevin White, UChicago bbca5ac2a1bc985b3426d987a64988fc https://www.encodeproject.org/files/ENCFF936XVR/@@download/ENCFF936XVR.bigWig released s3://encode-public/2019/04/16/0b2dffcf-6f53-418c-8eb0-57831c4bbfb2/ENCFF936XVR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HUB bam bam alignments hg19 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HUM/ 1253341283 John Stamatoyannopoulos, UW b10fb6885ec687300b45ba920772296d https://www.encodeproject.org/files/ENCFF001HUB/@@download/ENCFF001HUB.bam archived s3://encode-public/2011/06/25/c3f2a20e-f875-4ee2-9cd9-25a3275d7059/ENCFF001HUB.bam Lab custom hg19 archived low read length ENCFF001HUD bigWig bigWig raw signal hg19 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HUB/ 226658373 John Stamatoyannopoulos, UW 6f657d716cd72f2326dbe123ef9f4a76 https://www.encodeproject.org/files/ENCFF001HUD/@@download/ENCFF001HUD.bigWig archived s3://encode-public/2011/06/25/d1a1af90-8b05-477c-b0ba-1271c0b3392f/ENCFF001HUD.bigWig Lab custom hg19 archived low read length ENCFF001HUM fastq fastq reads ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 1309415418 John Stamatoyannopoulos, UW 4c5d5734d9566f59566543a217d7001b https://www.encodeproject.org/files/ENCFF001HUM/@@download/ENCFF001HUM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/a5b4b0e2-7362-418e-884e-72dd62be63ac/ENCFF001HUM.fastq.gz low read length ENCFF623WZZ bam bam unfiltered alignments GRCh38 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HUM/ 1570596035 ENCODE Processing Pipeline 2aa64fb4c0dbb30d661761ced626a4f0 https://www.encodeproject.org/files/ENCFF623WZZ/@@download/ENCFF623WZZ.bam released s3://encode-public/2016/08/09/d7079b36-845c-40c6-8077-0aff646e6704/ENCFF623WZZ.bam ENCODE3 GRCh38 archived low read length ENCFF320ZWB bam bam alignments GRCh38 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HUM/ 1155412571 ENCODE Processing Pipeline 796d4e286ab8e86bfa52fa2204a88e6b https://www.encodeproject.org/files/ENCFF320ZWB/@@download/ENCFF320ZWB.bam released s3://encode-public/2016/08/09/d4e7dafb-72c5-4489-9f00-e33a8bc4ab7a/ENCFF320ZWB.bam ENCODE3 GRCh38 archived low read length ENCFF322XOZ bam bam unfiltered alignments hg19 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HUM/ 1562404526 ENCODE Processing Pipeline 2cf657190803fa930d0c57e48391e0de https://www.encodeproject.org/files/ENCFF322XOZ/@@download/ENCFF322XOZ.bam released s3://encode-public/2016/11/13/2a7759eb-1989-4a80-843c-2201027ae775/ENCFF322XOZ.bam ENCODE3 hg19 archived low read length ENCFF340AIJ bam bam alignments hg19 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HUM/ 1156148708 ENCODE Processing Pipeline 0cff798a895de0f21e279c62a8330c69 https://www.encodeproject.org/files/ENCFF340AIJ/@@download/ENCFF340AIJ.bam released s3://encode-public/2016/11/13/38a8a28d-ff3d-41dd-9cb8-beb431b919e5/ENCFF340AIJ.bam ENCODE3 hg19 archived low read length ENCFF085DIO bam bam unfiltered alignments GRCh38 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HUM/, /files/ENCFF110MCL/ 1538096315 ENCODE Processing Pipeline 8581805939b1a3addcacaaf60433d77b https://www.encodeproject.org/files/ENCFF085DIO/@@download/ENCFF085DIO.bam released s3://encode-public/2020/09/03/a89e0698-e7e6-40a7-a34a-049376a71249/ENCFF085DIO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF806IOU bam bam alignments GRCh38 ENCSR000DWI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HUM/, /files/ENCFF110MCL/ 1256356204 ENCODE Processing Pipeline 489f998303de207486424777b53d47cd https://www.encodeproject.org/files/ENCFF806IOU/@@download/ENCFF806IOU.bam released s3://encode-public/2020/09/03/14181a59-3ffa-41f4-a7d6-688412556c00/ENCFF806IOU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF829TXJ fastq fastq reads ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF366SRC/ 2096261698 Richard Myers, HAIB 0a0d210fddd81bbc5aed8ef106f499ea SRA:SRR8660407 https://www.encodeproject.org/files/ENCFF829TXJ/@@download/ENCFF829TXJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/c6f0162f-c5c2-4853-8dfc-8a5ce471aab6/ENCFF829TXJ.fastq.gz ENCFF366SRC fastq fastq reads ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF829TXJ/ 2173305395 Richard Myers, HAIB f78ac6256659c6d05cce7e22d055e036 SRA:SRR8660407 https://www.encodeproject.org/files/ENCFF366SRC/@@download/ENCFF366SRC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/6779a431-2f79-409e-9743-d82dd39521d5/ENCFF366SRC.fastq.gz ENCFF938LSW bam bam alignments hg19 ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF366SRC/, /files/ENCFF807MUK/, /files/ENCFF829TXJ/ 3932160875 ENCODE Processing Pipeline 777b598b3ed4f24418a7b6ae33c21b3b https://www.encodeproject.org/files/ENCFF938LSW/@@download/ENCFF938LSW.bam released s3://encode-public/2017/02/02/902be998-cf8d-4f95-837d-4e849dc474d4/ENCFF938LSW.bam ENCODE3 hg19 archived ENCFF501ODA bam bam unfiltered alignments hg19 ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF366SRC/, /files/ENCFF807MUK/, /files/ENCFF829TXJ/ 5137544755 ENCODE Processing Pipeline 892bcbf8c514a282c54cce36217cf8d7 https://www.encodeproject.org/files/ENCFF501ODA/@@download/ENCFF501ODA.bam released s3://encode-public/2017/02/02/20657cf4-5062-464b-bc77-701fad5afba7/ENCFF501ODA.bam ENCODE3 hg19 archived ENCFF556HNY bam bam unfiltered alignments GRCh38 ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF366SRC/, /files/ENCFF643CGH/, /files/ENCFF829TXJ/ 5156453629 ENCODE Processing Pipeline d8368e8ab50990aceac570ae6e81cd5c https://www.encodeproject.org/files/ENCFF556HNY/@@download/ENCFF556HNY.bam released s3://encode-public/2017/02/02/6c93d701-9cf7-4e19-a4a1-5980292e9d76/ENCFF556HNY.bam ENCODE3 GRCh38 archived ENCFF845FAE bam bam alignments GRCh38 ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF366SRC/, /files/ENCFF643CGH/, /files/ENCFF829TXJ/ 3936680328 ENCODE Processing Pipeline 185a66bc69ff2cbef497aa38c74a6213 https://www.encodeproject.org/files/ENCFF845FAE/@@download/ENCFF845FAE.bam released s3://encode-public/2017/02/02/5bb983e0-dae7-474d-b925-950cb5a052b8/ENCFF845FAE.bam ENCODE3 GRCh38 archived ENCFF076ZPL bam bam unfiltered alignments GRCh38 ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF829TXJ/, /files/ENCFF366SRC/ 5107214362 ENCODE Processing Pipeline 6a1696de57031998ca565fe3fb49480d https://www.encodeproject.org/files/ENCFF076ZPL/@@download/ENCFF076ZPL.bam released s3://encode-public/2020/06/06/db402824-c913-432e-bb91-50dd9fb393c2/ENCFF076ZPL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF603KYY bam bam alignments GRCh38 ENCSR475KZM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF829TXJ/, /files/ENCFF366SRC/ 3723009873 ENCODE Processing Pipeline 34d635c38fe51335e11fecba97d0cc88 https://www.encodeproject.org/files/ENCFF603KYY/@@download/ENCFF603KYY.bam released s3://encode-public/2020/06/06/c30fe67b-7abf-4275-ab73-036cfa7576cc/ENCFF603KYY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF001HCT bigWig bigWig raw signal hg19 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HCU/ 159486831 John Stamatoyannopoulos, UW 908d58fff8c1d729db8037d628899b4a https://www.encodeproject.org/files/ENCFF001HCT/@@download/ENCFF001HCT.bigWig archived s3://encode-public/2011/06/25/1811584d-1114-4b29-a91b-cc2f02343bc3/ENCFF001HCT.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HCU bam bam alignments hg19 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HDF/ 708950659 John Stamatoyannopoulos, UW 2f328680d744eb80d163c7e82906c77b https://www.encodeproject.org/files/ENCFF001HCU/@@download/ENCFF001HCU.bam archived s3://encode-public/2011/06/25/b47cf544-a531-488c-b3b6-17761409533c/ENCFF001HCU.bam Lab custom hg19 archived low read depth, low read length ENCFF001HDF fastq fastq reads ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 763541193 John Stamatoyannopoulos, UW 6ae768f7b7886f7bff11eeb386621120 https://www.encodeproject.org/files/ENCFF001HDF/@@download/ENCFF001HDF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/fd396ff2-1843-4c43-ab43-9255fc98f822/ENCFF001HDF.fastq.gz low read depth, low read length ENCFF075MWT bam bam unfiltered alignments GRCh38 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HDF/ 939498361 ENCODE Processing Pipeline c9d965388be723db0bdf70dcafe786f3 https://www.encodeproject.org/files/ENCFF075MWT/@@download/ENCFF075MWT.bam released s3://encode-public/2016/08/09/67974052-f797-49f3-b99b-a65cd65ac541/ENCFF075MWT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF801BOV bam bam alignments GRCh38 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HDF/ 642179837 ENCODE Processing Pipeline 04fa29cd04b174d50d4eaecac6092fd5 https://www.encodeproject.org/files/ENCFF801BOV/@@download/ENCFF801BOV.bam released s3://encode-public/2016/08/09/1adef683-32a7-4063-98d2-9b947903ccd7/ENCFF801BOV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF593BXM bam bam alignments hg19 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HDF/ 641704267 ENCODE Processing Pipeline 6e23b501e35a318ebcb9c2f02a201114 https://www.encodeproject.org/files/ENCFF593BXM/@@download/ENCFF593BXM.bam released s3://encode-public/2016/08/23/30093118-3e7a-4ecb-962c-8d3946216e36/ENCFF593BXM.bam ENCODE3 hg19 archived low read depth, low read length ENCFF108NWK bam bam unfiltered alignments hg19 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HDF/ 934955118 ENCODE Processing Pipeline bb305854129904af073261c23561b607 https://www.encodeproject.org/files/ENCFF108NWK/@@download/ENCFF108NWK.bam released s3://encode-public/2016/08/23/9fce5678-9f52-4a40-9ae7-8ebb5c8e1c34/ENCFF108NWK.bam ENCODE3 hg19 archived low read depth, low read length ENCFF013AOD bam bam alignments GRCh38 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HDF/, /files/ENCFF110MCL/ 707289730 ENCODE Processing Pipeline 1fb492819c6867b4075c5e5c6c5dc794 https://www.encodeproject.org/files/ENCFF013AOD/@@download/ENCFF013AOD.bam released s3://encode-public/2020/09/03/6f7c15d2-f240-4361-8498-6907bc3ab23a/ENCFF013AOD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF829IJN bam bam unfiltered alignments GRCh38 ENCSR000DRD Control ChIP-seq /human-donors/ENCDO000ABP/ EFO:0005338 GM12865 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HDF/, /files/ENCFF110MCL/ 917754039 ENCODE Processing Pipeline 1889b7cf1bbf22559c4419abd6f4486a https://www.encodeproject.org/files/ENCFF829IJN/@@download/ENCFF829IJN.bam released s3://encode-public/2020/09/03/0ae56448-cc11-4db0-b78c-387e3faa06f5/ENCFF829IJN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF987UMM fastq fastq reads ENCSR555EMB Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 1979504395 Richard Myers, HAIB 4e7e7ddb2936c4f6a0cb41d439ba6ca3 SRA:SRR14106998 https://www.encodeproject.org/files/ENCFF987UMM/@@download/ENCFF987UMM.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/03/31/84d9a0de-b3b0-4a3c-8b49-18fbb71c531a/ENCFF987UMM.fastq.gz mild to moderate bottlenecking, low read depth ENCFF523HUD bam bam alignments GRCh38 ENCSR555EMB Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF987UMM/ 1086978036 ENCODE Processing Pipeline d5802401163dc583c7ade4fb8d825e13 https://www.encodeproject.org/files/ENCFF523HUD/@@download/ENCFF523HUD.bam released s3://encode-public/2020/04/20/37902b4c-e034-4aa7-af17-7939afdb84f6/ENCFF523HUD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF581KDF bam bam unfiltered alignments GRCh38 ENCSR555EMB Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF987UMM/ 1807702310 ENCODE Processing Pipeline 092e5b670301dbad4e55c5dbd0c6466b https://www.encodeproject.org/files/ENCFF581KDF/@@download/ENCFF581KDF.bam released s3://encode-public/2020/04/20/cae90f34-d161-472f-a328-1a5a4a132af2/ENCFF581KDF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF377JDN fastq fastq reads ENCSR203PPN Control ChIP-seq /fly-donors/ENCDO060YFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35066/'], '@type': ['Target', 'Item'], 'name': 'Oli-dmelanogaster', 'label': 'Oli', '@id': '/targets/Oli-dmelanogaster/', 'title': 'Oli (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '41e9040d-7e6f-4b19-a96d-f3dc940a99a9', 'status': 'released'} dm3 2L 17589506 17591267 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 279796683 Kevin White, UChicago 908448f16e2e4c4e2670f71c3b860c0a https://www.encodeproject.org/files/ENCFF377JDN/@@download/ENCFF377JDN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/8efaf863-2c16-4c0d-a3ca-c8846c508e4e/ENCFF377JDN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF429LGL bam bam alignments dm6 ENCSR203PPN Control ChIP-seq /fly-donors/ENCDO060YFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35066/'], '@type': ['Target', 'Item'], 'name': 'Oli-dmelanogaster', 'label': 'Oli', '@id': '/targets/Oli-dmelanogaster/', 'title': 'Oli (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '41e9040d-7e6f-4b19-a96d-f3dc940a99a9', 'status': 'released'} dm3 2L 17589506 17591267 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF377JDN/, /files/ENCFF479RCH/ 367196726 Kevin White, UChicago f3b2160b3d4d8d43b2e12d48a1344613 https://www.encodeproject.org/files/ENCFF429LGL/@@download/ENCFF429LGL.bam released s3://encode-public/2018/12/07/899fb596-477c-4a81-8d80-50db7f32849b/ENCFF429LGL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF345JYX bigWig bigWig read-depth normalized signal dm6 ENCSR203PPN Control ChIP-seq /fly-donors/ENCDO060YFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35066/'], '@type': ['Target', 'Item'], 'name': 'Oli-dmelanogaster', 'label': 'Oli', '@id': '/targets/Oli-dmelanogaster/', 'title': 'Oli (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '41e9040d-7e6f-4b19-a96d-f3dc940a99a9', 'status': 'released'} dm3 2L 17589506 17591267 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF429LGL/ 17433309 Kevin White, UChicago 8be1048582cefeb6bffd5ac4892e4d18 https://www.encodeproject.org/files/ENCFF345JYX/@@download/ENCFF345JYX.bigWig released s3://encode-public/2018/12/10/c7bee9bd-ee64-452b-801b-8459296789e9/ENCFF345JYX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF048CVQ bigWig bigWig signal of unique reads dm6 ENCSR203PPN Control ChIP-seq /fly-donors/ENCDO060YFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35066/'], '@type': ['Target', 'Item'], 'name': 'Oli-dmelanogaster', 'label': 'Oli', '@id': '/targets/Oli-dmelanogaster/', 'title': 'Oli (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '41e9040d-7e6f-4b19-a96d-f3dc940a99a9', 'status': 'released'} dm3 2L 17589506 17591267 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF429LGL/ 17438298 Kevin White, UChicago c8d4f69b050a92c8f151eb896b5be780 https://www.encodeproject.org/files/ENCFF048CVQ/@@download/ENCFF048CVQ.bigWig released s3://encode-public/2018/12/10/791c9462-095e-42e6-a584-4479dccf3eb9/ENCFF048CVQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000ZVK bam bam alignments hg19 ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVV/ 593455988 Kevin White, UChicago be6a2fe3f541b923c33b2e0ab95301cc https://www.encodeproject.org/files/ENCFF000ZVK/@@download/ENCFF000ZVK.bam archived s3://encode-public/2011/01/27/cc24ed14-c3ba-4985-8d14-c59e994991a8/ENCFF000ZVK.bam Lab custom hg19 archived low read length ENCFF000ZVV fastq fastq reads ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 single-ended 1160385917 Kevin White, UChicago 6971d9cf2cbc4d071a2c27c4ce9f1041 https://www.encodeproject.org/files/ENCFF000ZVV/@@download/ENCFF000ZVV.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/01/27/b38683eb-520f-4cb2-a253-f855a467cf13/ENCFF000ZVV.fastq.gz low read length ENCFF138FPL bam bam alignments hg19 ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVV/, /files/ENCFF807MUK/ 912533010 ENCODE Processing Pipeline 2be591c68932cecd5cd492bfdf772e07 https://www.encodeproject.org/files/ENCFF138FPL/@@download/ENCFF138FPL.bam released s3://encode-public/2016/08/23/7a8a2a2f-b270-4fdc-9d94-a3e1a3a78e02/ENCFF138FPL.bam ENCODE3 hg19 archived low read length ENCFF815TQT bam bam unfiltered alignments GRCh38 ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVV/, /files/ENCFF643CGH/ 1412260645 ENCODE Processing Pipeline fce166df37dc2811ad0312ccc483612d https://www.encodeproject.org/files/ENCFF815TQT/@@download/ENCFF815TQT.bam released s3://encode-public/2016/08/23/6282d932-f850-4093-b48b-8aa25e0697f1/ENCFF815TQT.bam ENCODE3 GRCh38 archived low read length ENCFF683DQU bam bam alignments GRCh38 ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVV/, /files/ENCFF643CGH/ 912030944 ENCODE Processing Pipeline e0cfc9cb61d5ec42e7a98d9ac8cb566f https://www.encodeproject.org/files/ENCFF683DQU/@@download/ENCFF683DQU.bam released s3://encode-public/2016/08/23/2f7cdb0d-064c-4369-a475-797d9ac1f791/ENCFF683DQU.bam ENCODE3 GRCh38 archived low read length ENCFF083XXV bam bam unfiltered alignments hg19 ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVV/, /files/ENCFF807MUK/ 1403630243 ENCODE Processing Pipeline 6b875881d73338a44ab6d25e878527aa https://www.encodeproject.org/files/ENCFF083XXV/@@download/ENCFF083XXV.bam released s3://encode-public/2016/08/23/8e0a1e1f-2127-47a2-b949-3a0ea7636b51/ENCFF083XXV.bam ENCODE3 hg19 archived low read length ENCFF615JGW bam bam unfiltered alignments GRCh38 ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZVV/ 1383441542 ENCODE Processing Pipeline b420d638e1b09c65f0b91714a3d36be8 https://www.encodeproject.org/files/ENCFF615JGW/@@download/ENCFF615JGW.bam released s3://encode-public/2020/10/27/5f1b3c03-f32e-4919-8429-479a45d2912b/ENCFF615JGW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF154JOC bam bam alignments GRCh38 ENCSR000DKF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZVV/ 995220166 ENCODE Processing Pipeline 418e8ec748ced1cf2b27d2d7d2dde007 https://www.encodeproject.org/files/ENCFF154JOC/@@download/ENCFF154JOC.bam released s3://encode-public/2020/10/27/4ae012eb-c4bf-40bc-b632-33ec12591955/ENCFF154JOC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF783VAO bam bam unfiltered alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF501PIN/, /files/ENCFF110MCL/ 1056969333 ENCODE Processing Pipeline e976f1015ad6f30b1799701a0a34c2dc https://www.encodeproject.org/files/ENCFF783VAO/@@download/ENCFF783VAO.bam released s3://encode-public/2020/09/29/9601e4a8-218d-4d2d-a212-8b2a9e44e4a4/ENCFF783VAO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF399DHJ bam bam alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF927VIV/, /files/ENCFF110MCL/ 899528132 ENCODE Processing Pipeline 2e533086ff6369b613b21b07cef32397 https://www.encodeproject.org/files/ENCFF399DHJ/@@download/ENCFF399DHJ.bam released s3://encode-public/2020/09/29/2f8ff9de-8bca-4dd0-b6c6-6650e87ba9ae/ENCFF399DHJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF927VIV fastq fastq reads ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 779514648 Tim Reddy, Duke a46576c78834395bc2a6ce49a5263c42 SRA:SRR5129625 https://www.encodeproject.org/files/ENCFF927VIV/@@download/ENCFF927VIV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/32004cfe-ae16-4c38-8975-4802064c6d8e/ENCFF927VIV.fastq.gz ENCFF464RUY fastq fastq reads ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 844391554 Tim Reddy, Duke 371693f8fc6912a455ca267410d0486f SRA:SRR5129626 https://www.encodeproject.org/files/ENCFF464RUY/@@download/ENCFF464RUY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/fddf996a-61c3-4fe1-9d01-598aea017586/ENCFF464RUY.fastq.gz ENCFF501PIN fastq fastq reads ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 829509060 Tim Reddy, Duke c5f0938038003a321144266eb9173daa SRA:SRR5129627 https://www.encodeproject.org/files/ENCFF501PIN/@@download/ENCFF501PIN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/05e1744f-b3ad-47ba-b671-b23d8cccba85/ENCFF501PIN.fastq.gz ENCFF069PUL bam bam alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF927VIV/ 852102305 Tim Reddy, Duke fb41e0037b7b46633e9f1b8f57ff93bc https://www.encodeproject.org/files/ENCFF069PUL/@@download/ENCFF069PUL.bam released s3://encode-public/2016/12/15/0b4a129b-c32a-4422-a8b3-3bf8f3614d4a/ENCFF069PUL.bam Lab custom GRCh38 archived ENCFF211SRS bam bam alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF464RUY/ 919474384 Tim Reddy, Duke d2746ebc1e595fb46d386ff92d3f296a https://www.encodeproject.org/files/ENCFF211SRS/@@download/ENCFF211SRS.bam released s3://encode-public/2016/12/15/e6763175-fd21-40e8-804b-d184f25c9f93/ENCFF211SRS.bam Lab custom GRCh38 archived ENCFF782LQS bam bam alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF501PIN/ 819345970 Tim Reddy, Duke bc293d9b99c708af169504fc12d17198 https://www.encodeproject.org/files/ENCFF782LQS/@@download/ENCFF782LQS.bam released s3://encode-public/2016/12/15/5a6657f7-ba19-42e5-ac92-19c7e130044b/ENCFF782LQS.bam Lab custom GRCh38 archived ENCFF530WOC bam bam unfiltered alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF464RUY/, /files/ENCFF110MCL/ 1146702910 ENCODE Processing Pipeline 1911cc9728c0cb7cdaefdca4735d38b5 https://www.encodeproject.org/files/ENCFF530WOC/@@download/ENCFF530WOC.bam released s3://encode-public/2020/09/29/3edab3ae-3860-4d9d-87ff-bf9edc52caf3/ENCFF530WOC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF939HHI bam bam unfiltered alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF927VIV/, /files/ENCFF110MCL/ 1055573950 ENCODE Processing Pipeline 506302ed795b5735e4c1bfc427d62a0b https://www.encodeproject.org/files/ENCFF939HHI/@@download/ENCFF939HHI.bam released s3://encode-public/2020/09/29/25516042-5e95-4cdf-bcea-6b77fb0ae9be/ENCFF939HHI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF853RGE bam bam alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF464RUY/, /files/ENCFF110MCL/ 965981101 ENCODE Processing Pipeline d312a9e06cc76c6a17413822ef7aa6b8 https://www.encodeproject.org/files/ENCFF853RGE/@@download/ENCFF853RGE.bam released s3://encode-public/2020/09/29/74a562e5-0933-460f-ad8c-511fcf9c58f8/ENCFF853RGE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF368ZHS bam bam alignments GRCh38 ENCSR328BXP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF501PIN/, /files/ENCFF110MCL/ 864985288 ENCODE Processing Pipeline 9fc06842e43e9d61ebed7fce0c9f09b4 https://www.encodeproject.org/files/ENCFF368ZHS/@@download/ENCFF368ZHS.bam released s3://encode-public/2020/09/29/053479d3-9e4a-4c4a-b1b7-fc0e448f65fc/ENCFF368ZHS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF000QPY bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 /files/ENCFF000QQJ/ 1566571613 Richard Myers, HAIB 794c0a17843d162985592072f2dfc575 https://www.encodeproject.org/files/ENCFF000QPY/@@download/ENCFF000QPY.bam archived s3://encode-public/2012/01/23/4ad3893c-b9f7-4520-aa07-c29c9f23eb01/ENCFF000QPY.bam Lab custom hg19 archived ENCFF000QPZ bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 /files/ENCFF000QQG/ 1758473734 Richard Myers, HAIB 5e6f1ddb16533dd1a183885e51762650 https://www.encodeproject.org/files/ENCFF000QPZ/@@download/ENCFF000QPZ.bam archived s3://encode-public/2012/01/23/272e6c65-5fef-450f-814e-3b4afd2305b8/ENCFF000QPZ.bam Lab custom hg19 archived ENCFF000QQB bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 /files/ENCFF000QQI/ 1521884290 Richard Myers, HAIB 360f9b744cb29c8edd703ad2ff54d3e0 https://www.encodeproject.org/files/ENCFF000QQB/@@download/ENCFF000QQB.bam archived s3://encode-public/2012/01/23/8d2b2f9f-8ce2-400a-b412-4113144edb61/ENCFF000QQB.bam Lab custom hg19 archived ENCFF000QQC bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 /files/ENCFF000QQK/ 1603909911 Richard Myers, HAIB 3658b00af6d1cef4584e2c03eb20e9bc https://www.encodeproject.org/files/ENCFF000QQC/@@download/ENCFF000QQC.bam archived s3://encode-public/2012/01/23/f5bf175a-99ab-4dda-9b73-bc5210860295/ENCFF000QQC.bam Lab custom hg19 archived ENCFF000QQD bigWig bigWig raw signal hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 226678806 Richard Myers, HAIB 5bebd55472512883bf7f6a611d1d4903 https://www.encodeproject.org/files/ENCFF000QQD/@@download/ENCFF000QQD.bigWig archived s3://encode-public/2012/01/23/90bfc402-0899-476c-854c-41f26a2abb0f/ENCFF000QQD.bigWig Lab custom hg19 archived ENCFF000QQE bigWig bigWig raw signal hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 153697999 Richard Myers, HAIB 38ef9fd352abfa883c1034b2ef1d169b https://www.encodeproject.org/files/ENCFF000QQE/@@download/ENCFF000QQE.bigWig archived s3://encode-public/2012/01/23/60d518ff-965a-487b-bf41-0b1c3c9d742b/ENCFF000QQE.bigWig Lab custom hg19 archived ENCFF000QQF bigWig bigWig raw signal hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 150126498 Richard Myers, HAIB 7eb9ea1e5bae3f59154221a56e7ee497 https://www.encodeproject.org/files/ENCFF000QQF/@@download/ENCFF000QQF.bigWig archived s3://encode-public/2012/01/23/b3a69a86-ec4a-4a4e-a7de-7b3bc15cf218/ENCFF000QQF.bigWig Lab custom hg19 archived ENCFF000QQG fastq fastq reads ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 single-ended 1515187686 Richard Myers, HAIB d0586afc34a3a74d9df678006ece2783 https://www.encodeproject.org/files/ENCFF000QQG/@@download/ENCFF000QQG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/06a1d5c1-2d6e-4f3a-bb2b-4e2f7b7e6c6d/ENCFF000QQG.fastq.gz ENCFF000QQH bigWig bigWig raw signal hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 212902634 Richard Myers, HAIB 77616e1d41f3163cd7271644d6cfef9d https://www.encodeproject.org/files/ENCFF000QQH/@@download/ENCFF000QQH.bigWig archived s3://encode-public/2012/01/23/3764d171-51cb-4597-a512-c5c8bea61844/ENCFF000QQH.bigWig Lab custom hg19 archived ENCFF000QQI fastq fastq reads ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 single-ended 1547046134 Richard Myers, HAIB 38981ec5dace249051aba2a4c1ad5776 https://www.encodeproject.org/files/ENCFF000QQI/@@download/ENCFF000QQI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/03c1433d-b5d8-4130-a7b4-514042715604/ENCFF000QQI.fastq.gz ENCFF000QQJ fastq fastq reads ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 single-ended 1349444134 Richard Myers, HAIB 24047fc41f31076710983722a204f6fb https://www.encodeproject.org/files/ENCFF000QQJ/@@download/ENCFF000QQJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/123d6cad-e34b-4123-8f61-126c9bdf76e6/ENCFF000QQJ.fastq.gz ENCFF000QQK fastq fastq reads ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 single-ended 1376442512 Richard Myers, HAIB 512efc76ee5a96a6e3e07cdccdc3258d https://www.encodeproject.org/files/ENCFF000QQK/@@download/ENCFF000QQK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/b01be925-80d1-44cd-99c3-8d8a8809bc7e/ENCFF000QQK.fastq.gz ENCFF154KFQ bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 /files/ENCFF000QQI/, /files/ENCFF643CGH/ 1653533206 ENCODE Processing Pipeline 3fff6510ce4d4a79e872c49985dacf00 https://www.encodeproject.org/files/ENCFF154KFQ/@@download/ENCFF154KFQ.bam released s3://encode-public/2016/04/19/19934b0c-0ecb-4156-be72-001e5c123db1/ENCFF154KFQ.bam ENCODE3 GRCh38 archived ENCFF443BKA bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 /files/ENCFF643CGH/, /files/ENCFF000QQJ/ 1696041622 ENCODE Processing Pipeline 3a838336af5005362dad708513d0dc05 https://www.encodeproject.org/files/ENCFF443BKA/@@download/ENCFF443BKA.bam released s3://encode-public/2016/04/19/31f7f63c-47c6-4baa-8d7e-16439560e6d8/ENCFF443BKA.bam ENCODE3 GRCh38 archived ENCFF954EQJ bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 /files/ENCFF000QQK/, /files/ENCFF643CGH/ 1759389044 ENCODE Processing Pipeline 4d710f440c3add500d94b1b3e10f572a https://www.encodeproject.org/files/ENCFF954EQJ/@@download/ENCFF954EQJ.bam released s3://encode-public/2016/04/19/c5f11f8f-0ff8-4f6d-acf5-eeedb5ea47f2/ENCFF954EQJ.bam ENCODE3 GRCh38 archived ENCFF997HJN bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000QQG/ 1922856192 ENCODE Processing Pipeline 9a5eab7129c0b4df4ce1d8ae09d4adf3 https://www.encodeproject.org/files/ENCFF997HJN/@@download/ENCFF997HJN.bam released s3://encode-public/2016/04/19/4426fdbd-ae17-4add-a91e-f2b49ef02bc2/ENCFF997HJN.bam ENCODE3 GRCh38 archived ENCFF016SKS bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 /files/ENCFF000QQK/, /files/ENCFF643CGH/ 1256026260 ENCODE Processing Pipeline b994712477b4f474d94b633fc12eca93 https://www.encodeproject.org/files/ENCFF016SKS/@@download/ENCFF016SKS.bam released s3://encode-public/2016/05/05/7663d15a-98c7-45f6-9481-02dc2c7212f0/ENCFF016SKS.bam ENCODE3 GRCh38 archived ENCFF139XSQ bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 /files/ENCFF643CGH/, /files/ENCFF000QQJ/ 1186281502 ENCODE Processing Pipeline 8f1dc8ae53742c9072154780aa903101 https://www.encodeproject.org/files/ENCFF139XSQ/@@download/ENCFF139XSQ.bam released s3://encode-public/2016/05/05/ff1c7669-bb9b-4137-8423-154710bf1736/ENCFF139XSQ.bam ENCODE3 GRCh38 archived ENCFF927WZT bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 /files/ENCFF000QQI/, /files/ENCFF643CGH/ 1158544119 ENCODE Processing Pipeline e9e5709b65b5b089ca82d26701f6b51b https://www.encodeproject.org/files/ENCFF927WZT/@@download/ENCFF927WZT.bam released s3://encode-public/2016/05/05/9ebd68d3-589c-422e-851c-60d82a4efee1/ENCFF927WZT.bam ENCODE3 GRCh38 archived ENCFF511JFV bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000QQG/ 1415699511 ENCODE Processing Pipeline dc2ca841d417ec67b0ef13088e9b9314 https://www.encodeproject.org/files/ENCFF511JFV/@@download/ENCFF511JFV.bam released s3://encode-public/2016/05/05/59a5d428-c6ad-4e93-a5d4-d63d02e1d8c0/ENCFF511JFV.bam ENCODE3 GRCh38 archived ENCFF985VVS bam bam unfiltered alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 /files/ENCFF000QQK/, /files/ENCFF807MUK/ 1753442287 ENCODE Processing Pipeline 110f3c736ac1c52a80b531056a1b0a0b https://www.encodeproject.org/files/ENCFF985VVS/@@download/ENCFF985VVS.bam released s3://encode-public/2016/12/02/8e46f416-7811-4e73-80a3-9c1fed88dbc1/ENCFF985VVS.bam ENCODE3 hg19 archived ENCFF140HEW bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 /files/ENCFF000QQK/, /files/ENCFF807MUK/ 1256332190 ENCODE Processing Pipeline 08f79136d427630a95236d50cf5181a8 https://www.encodeproject.org/files/ENCFF140HEW/@@download/ENCFF140HEW.bam released s3://encode-public/2016/12/02/292a1441-f62e-4673-81c2-d45e8edda634/ENCFF140HEW.bam ENCODE3 hg19 archived ENCFF052XQS bam bam unfiltered alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 /files/ENCFF000QQI/, /files/ENCFF807MUK/ 1648493638 ENCODE Processing Pipeline 2ca32c106765bb350d52225ca01f18a6 https://www.encodeproject.org/files/ENCFF052XQS/@@download/ENCFF052XQS.bam released s3://encode-public/2016/12/03/c487aaef-9d70-4fc9-8f73-3b19b109ee7a/ENCFF052XQS.bam ENCODE3 hg19 archived ENCFF479YGR bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 /files/ENCFF000QQI/, /files/ENCFF807MUK/ 1158668887 ENCODE Processing Pipeline 6bd04e8799cb44b453dda07692928118 https://www.encodeproject.org/files/ENCFF479YGR/@@download/ENCFF479YGR.bam released s3://encode-public/2016/12/03/de50e1b1-1b38-4b26-aa34-410b04474f83/ENCFF479YGR.bam ENCODE3 hg19 archived ENCFF704JJT bam bam unfiltered alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 /files/ENCFF807MUK/, /files/ENCFF000QQJ/ 1690874562 ENCODE Processing Pipeline 33243c0e5a41e43560662ad246e3e1ae https://www.encodeproject.org/files/ENCFF704JJT/@@download/ENCFF704JJT.bam released s3://encode-public/2016/12/03/f1c62daa-1b21-471c-b178-8e76e75bd8f9/ENCFF704JJT.bam ENCODE3 hg19 archived ENCFF719RCX bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 /files/ENCFF807MUK/, /files/ENCFF000QQJ/ 1186459377 ENCODE Processing Pipeline fa3bcf4847491350aba52a48c25aba1f https://www.encodeproject.org/files/ENCFF719RCX/@@download/ENCFF719RCX.bam released s3://encode-public/2016/12/03/89900e38-3df6-406f-88aa-61e865c79d87/ENCFF719RCX.bam ENCODE3 hg19 archived ENCFF473IID bam bam unfiltered alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000QQG/ 1917809995 ENCODE Processing Pipeline d85f8a5ebc3379b4d95f7584efc08d5b https://www.encodeproject.org/files/ENCFF473IID/@@download/ENCFF473IID.bam released s3://encode-public/2016/12/03/0fec2d09-d1eb-4e56-bad4-d582a680032f/ENCFF473IID.bam ENCODE3 hg19 archived ENCFF441ZHT bam bam alignments hg19 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000QQG/ 1416026939 ENCODE Processing Pipeline a977b5d9ac5af9c7f295b4a7e3240c4a https://www.encodeproject.org/files/ENCFF441ZHT/@@download/ENCFF441ZHT.bam released s3://encode-public/2016/12/03/955e098d-27d3-4735-a7dc-a282da0c9c90/ENCFF441ZHT.bam ENCODE3 hg19 archived ENCFF604PZB bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 /files/ENCFF000QQG/, /files/ENCFF110MCL/ 1923115560 ENCODE Processing Pipeline 1a8d8f9e698db5170cfc058c355b5ae3 https://www.encodeproject.org/files/ENCFF604PZB/@@download/ENCFF604PZB.bam released s3://encode-public/2020/09/03/21a59295-80b1-45d8-8d1f-43b5b2765af0/ENCFF604PZB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF401HOO bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 /files/ENCFF000QQJ/, /files/ENCFF110MCL/ 1706740246 ENCODE Processing Pipeline 88d2cfcc8d4b3413f99d3521b363bcda https://www.encodeproject.org/files/ENCFF401HOO/@@download/ENCFF401HOO.bam released s3://encode-public/2020/09/03/e93aa8c4-d019-4e70-92b3-9f1c16cbc637/ENCFF401HOO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF153LTH bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 1 1_1 50 /files/ENCFF000QQG/, /files/ENCFF110MCL/ 1449883044 ENCODE Processing Pipeline fa29c47004966557e6d8d9caa2094e9e https://www.encodeproject.org/files/ENCFF153LTH/@@download/ENCFF153LTH.bam released s3://encode-public/2020/09/03/a2dc2a87-46f9-48a8-9322-d669867bdd96/ENCFF153LTH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF739UBQ bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 /files/ENCFF000QQK/, /files/ENCFF110MCL/ 1756590978 ENCODE Processing Pipeline bcbfacea64e225de22de8a054e6219d1 https://www.encodeproject.org/files/ENCFF739UBQ/@@download/ENCFF739UBQ.bam released s3://encode-public/2020/09/03/49d2d3d3-82aa-4e3f-82b3-9e3c91920bc2/ENCFF739UBQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF731WWK bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 2 2_1 50 /files/ENCFF000QQJ/, /files/ENCFF110MCL/ 1223637843 ENCODE Processing Pipeline 9a53c8a6a7b8f2d3e38acef84e60c863 https://www.encodeproject.org/files/ENCFF731WWK/@@download/ENCFF731WWK.bam released s3://encode-public/2020/09/03/964e01c0-0fc5-4d81-96bb-7cd065d52f84/ENCFF731WWK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF580NUZ bam bam unfiltered alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 /files/ENCFF000QQI/, /files/ENCFF110MCL/ 1656141871 ENCODE Processing Pipeline 10128c0d2316b044395b3d8d39c54860 https://www.encodeproject.org/files/ENCFF580NUZ/@@download/ENCFF580NUZ.bam released s3://encode-public/2020/09/03/9be9de5a-0542-477b-a0a5-16651b515fc4/ENCFF580NUZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF671SEQ bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 4 4_1 50 /files/ENCFF000QQK/, /files/ENCFF110MCL/ 1318428595 ENCODE Processing Pipeline eb002e424c0462351fe9d2ebaad6c1c0 https://www.encodeproject.org/files/ENCFF671SEQ/@@download/ENCFF671SEQ.bam released s3://encode-public/2020/09/03/f6e713fd-de76-40d2-9edb-2e699805463b/ENCFF671SEQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF310KKN bam bam alignments GRCh38 ENCSR000AHE Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2012-09-10 ENCODE sonication (Bioruptor Twin), see document 100-300 3 3_1 50 /files/ENCFF000QQI/, /files/ENCFF110MCL/ 1206902969 ENCODE Processing Pipeline 647dbd5408e2e85647d4b4d1c3b6ecff https://www.encodeproject.org/files/ENCFF310KKN/@@download/ENCFF310KKN.bam released s3://encode-public/2020/09/03/f06f8687-0ff1-47ce-8bf4-c4b26f43cddf/ENCFF310KKN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF000ZVS bam bam alignments hg19 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZWC/ 533894753 Kevin White, UChicago 35f2cc4323b88e61389894af7c10fbf6 https://www.encodeproject.org/files/ENCFF000ZVS/@@download/ENCFF000ZVS.bam archived s3://encode-public/2011/01/27/e8c11dbe-34c4-49d5-b33c-60bf70ec6fba/ENCFF000ZVS.bam Lab custom hg19 archived low read depth, low read length ENCFF000ZVU bam bam alignments hg19 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF000ZWA/ 654540168 Kevin White, UChicago 9ff96d536190ae35181ae3ec79f16db8 https://www.encodeproject.org/files/ENCFF000ZVU/@@download/ENCFF000ZVU.bam archived s3://encode-public/2011/01/27/dda5b2ca-e03f-4857-b973-98f4a5322a44/ENCFF000ZVU.bam Lab custom hg19 archived low read depth, low read length ENCFF000ZWA fastq fastq reads ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 single-ended 812877135 Kevin White, UChicago 7a389138aa0c34511caf32b42f63b2dd https://www.encodeproject.org/files/ENCFF000ZWA/@@download/ENCFF000ZWA.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/01/27/c35723dd-5106-43f0-869c-296fb90a6e8c/ENCFF000ZWA.fastq.gz low read depth, low read length ENCFF000ZWC fastq fastq reads ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 single-ended 625040462 Kevin White, UChicago 9072b20a7d5f1c65650ac43a139f75eb https://www.encodeproject.org/files/ENCFF000ZWC/@@download/ENCFF000ZWC.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/01/27/399d5d8a-6e94-4b60-89da-67c82fe9877a/ENCFF000ZWC.fastq.gz low read depth, low read length ENCFF945IIQ bam bam alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZWA/ 679943236 ENCODE Processing Pipeline 4cde36c8af5e9482f3439a33cdda7db1 https://www.encodeproject.org/files/ENCFF945IIQ/@@download/ENCFF945IIQ.bam released s3://encode-public/2016/08/23/d497203a-4dca-4e1e-b2aa-ab0e95b56150/ENCFF945IIQ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF767IHT bam bam unfiltered alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZWC/ 770964964 ENCODE Processing Pipeline f34c5b2a7107cd62d0b1bca1ecdceb1e https://www.encodeproject.org/files/ENCFF767IHT/@@download/ENCFF767IHT.bam released s3://encode-public/2016/08/23/8ed541f9-7207-4da6-82cd-b8b579e120d2/ENCFF767IHT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF579HDO bam bam unfiltered alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZWA/ 1000297409 ENCODE Processing Pipeline e66dbf21ed34ec92811ca8b31bcca291 https://www.encodeproject.org/files/ENCFF579HDO/@@download/ENCFF579HDO.bam released s3://encode-public/2016/08/23/9615972f-dabb-4642-982d-b6b6d3b3e6d5/ENCFF579HDO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF464ZQT bam bam alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZWC/ 542229800 ENCODE Processing Pipeline dcc5c7bad939865c5eb4fa0cd12e02c4 https://www.encodeproject.org/files/ENCFF464ZQT/@@download/ENCFF464ZQT.bam released s3://encode-public/2016/08/23/6740a393-2f7b-402a-a833-641872fca5b7/ENCFF464ZQT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF916KEM bam bam unfiltered alignments hg19 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZWC/ 766023547 ENCODE Processing Pipeline e797b3fb23b7005655d2dba9917d41dd https://www.encodeproject.org/files/ENCFF916KEM/@@download/ENCFF916KEM.bam released s3://encode-public/2016/08/23/a06bad0b-a6d9-4078-9ae8-630970af9098/ENCFF916KEM.bam ENCODE3 hg19 archived low read depth, low read length ENCFF522WTU bam bam unfiltered alignments hg19 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZWA/ 996019279 ENCODE Processing Pipeline 2d7e9750d25111d75dd65a7b7ef18c85 https://www.encodeproject.org/files/ENCFF522WTU/@@download/ENCFF522WTU.bam released s3://encode-public/2016/08/23/f31d803b-89df-44d0-a35b-851025901075/ENCFF522WTU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF400JIA bam bam alignments hg19 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZWA/ 680520287 ENCODE Processing Pipeline 4fd6f4eefa5abf5a881b749fee2b0b1c https://www.encodeproject.org/files/ENCFF400JIA/@@download/ENCFF400JIA.bam released s3://encode-public/2016/08/23/4361acfa-28fe-418b-ac31-86936fa12ed7/ENCFF400JIA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF513HKA bam bam alignments hg19 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZWC/ 542513207 ENCODE Processing Pipeline 4054c905596adfa80d0757d3882857d4 https://www.encodeproject.org/files/ENCFF513HKA/@@download/ENCFF513HKA.bam released s3://encode-public/2016/08/23/45ef8166-90db-4393-bb91-cc8d7767fed4/ENCFF513HKA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF215HCQ bam bam unfiltered alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZWC/ 756675315 ENCODE Processing Pipeline 5edf37d4303b91793a5e767d1a4b37fc https://www.encodeproject.org/files/ENCFF215HCQ/@@download/ENCFF215HCQ.bam released s3://encode-public/2020/10/27/98270c9a-d053-404e-a27c-aae5fd225d0d/ENCFF215HCQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF662AVE bam bam unfiltered alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZWA/ 977536938 ENCODE Processing Pipeline 99d7184d2e1517f1e716b56261065b86 https://www.encodeproject.org/files/ENCFF662AVE/@@download/ENCFF662AVE.bam released s3://encode-public/2020/10/27/205533b6-9397-45de-9112-03acdd6237aa/ENCFF662AVE.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF585RYA bam bam alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZWA/ 743967112 ENCODE Processing Pipeline a1eddb0352d3376a06245e75f2533222 https://www.encodeproject.org/files/ENCFF585RYA/@@download/ENCFF585RYA.bam released s3://encode-public/2020/10/27/b754a3cb-6141-49a6-bf52-cc94de7aa2a6/ENCFF585RYA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF850UIN bam bam alignments GRCh38 ENCSR000DKD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZWC/ 587856421 ENCODE Processing Pipeline 84ba8367e9491bd140678dfb4168598d https://www.encodeproject.org/files/ENCFF850UIN/@@download/ENCFF850UIN.bam released s3://encode-public/2020/10/27/5ebba9b5-df5d-4885-b739-07185dc93853/ENCFF850UIN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000ZVY bam bam alignments hg19 ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZXU/ 785705187 Kevin White, UChicago ecd58198380ab5d4ac21028e531b960e https://www.encodeproject.org/files/ENCFF000ZVY/@@download/ENCFF000ZVY.bam archived s3://encode-public/2011/01/27/ca3e4a4e-3709-4d55-9cd1-3e4f79000b54/ENCFF000ZVY.bam Lab custom hg19 archived low read length ENCFF000ZXU fastq fastq reads ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 single-ended 955900148 Kevin White, UChicago 3db90fb5516da7fcb326a232840d7071 https://www.encodeproject.org/files/ENCFF000ZXU/@@download/ENCFF000ZXU.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/01/27/a8647a02-2dc9-4f6a-a3f7-074f3eb6fd08/ENCFF000ZXU.fastq.gz low read length ENCFF686CFO bam bam unfiltered alignments GRCh38 ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZXU/, /files/ENCFF643CGH/ 1182466296 ENCODE Processing Pipeline 2d403b21d8d8051383e074d0d18db201 https://www.encodeproject.org/files/ENCFF686CFO/@@download/ENCFF686CFO.bam released s3://encode-public/2016/08/23/3e499061-4b7b-4ad3-a395-eeda8cd8c004/ENCFF686CFO.bam ENCODE3 GRCh38 archived low read length ENCFF713KWF bam bam alignments hg19 ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZXU/, /files/ENCFF807MUK/ 823349901 ENCODE Processing Pipeline 380d6c8c2c62099514605a7ae44e95d2 https://www.encodeproject.org/files/ENCFF713KWF/@@download/ENCFF713KWF.bam released s3://encode-public/2016/08/23/5dbe6d02-5b32-4abb-901e-fbc84f156c44/ENCFF713KWF.bam ENCODE3 hg19 archived low read length ENCFF244GCJ bam bam alignments GRCh38 ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZXU/, /files/ENCFF643CGH/ 822782237 ENCODE Processing Pipeline 2b181c13628e6edab437dbdbe0507ed9 https://www.encodeproject.org/files/ENCFF244GCJ/@@download/ENCFF244GCJ.bam released s3://encode-public/2016/08/23/e50ef871-cf78-4a5e-87d1-47c1bcf7b71f/ENCFF244GCJ.bam ENCODE3 GRCh38 archived low read length ENCFF829QZD bam bam unfiltered alignments hg19 ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZXU/, /files/ENCFF807MUK/ 1176595290 ENCODE Processing Pipeline cc307616f8edcc7ecc0cf2ac3703e357 https://www.encodeproject.org/files/ENCFF829QZD/@@download/ENCFF829QZD.bam released s3://encode-public/2016/08/23/6825e31c-d302-4995-8308-99cbf431fadd/ENCFF829QZD.bam ENCODE3 hg19 archived low read length ENCFF396NHH bam bam unfiltered alignments GRCh38 ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZXU/, /files/ENCFF110MCL/ 1155133415 ENCODE Processing Pipeline 32ceb501ac4a09dd258477ecdbdac5fb https://www.encodeproject.org/files/ENCFF396NHH/@@download/ENCFF396NHH.bam released s3://encode-public/2020/10/27/9c3bed82-b1f5-4534-880a-91cd9b9dbc44/ENCFF396NHH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF126GHY bam bam alignments GRCh38 ENCSR000DKC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZXU/, /files/ENCFF110MCL/ 900636645 ENCODE Processing Pipeline a19a3c44b38b8196f12d3b9540cecadd https://www.encodeproject.org/files/ENCFF126GHY/@@download/ENCFF126GHY.bam released s3://encode-public/2020/10/27/01e1ae1f-ea13-4608-8467-41b712466a2b/ENCFF126GHY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF745DTX fastq fastq reads ENCSR883NMO Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1131'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58499/'], '@type': ['Target', 'Item'], 'name': 'ZNF462-human', 'label': 'ZNF462', '@id': '/targets/ZNF462-human/', 'title': 'ZNF462 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0d51ef48-d8d3-442d-a12a-38c14798b5e4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF899ZTI/ 2469707772 Michael Snyder, Stanford 0e09de5de91b9a1cac6e16c38c20e875 SRA:SRR14105447 https://www.encodeproject.org/files/ENCFF745DTX/@@download/ENCFF745DTX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/b0e5bafb-489d-445f-930b-251acc482671/ENCFF745DTX.fastq.gz mild to moderate bottlenecking ENCFF899ZTI fastq fastq reads ENCSR883NMO Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1131'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58499/'], '@type': ['Target', 'Item'], 'name': 'ZNF462-human', 'label': 'ZNF462', '@id': '/targets/ZNF462-human/', 'title': 'ZNF462 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0d51ef48-d8d3-442d-a12a-38c14798b5e4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF745DTX/ 2265860199 Michael Snyder, Stanford ce67c346651f046c065f10a92902f1b1 SRA:SRR14105447 https://www.encodeproject.org/files/ENCFF899ZTI/@@download/ENCFF899ZTI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/5f34f38a-cd7d-45ef-bdcc-10ab591b74d1/ENCFF899ZTI.fastq.gz mild to moderate bottlenecking ENCFF812QGN bam bam alignments GRCh38 ENCSR883NMO Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1131'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58499/'], '@type': ['Target', 'Item'], 'name': 'ZNF462-human', 'label': 'ZNF462', '@id': '/targets/ZNF462-human/', 'title': 'ZNF462 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0d51ef48-d8d3-442d-a12a-38c14798b5e4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF899ZTI/, /files/ENCFF745DTX/ 3266996946 ENCODE Processing Pipeline f51fbc061f61afdbcc061134136afb0c https://www.encodeproject.org/files/ENCFF812QGN/@@download/ENCFF812QGN.bam released s3://encode-public/2020/04/21/b968f25e-029a-4874-a38b-f31a8f8cc0a5/ENCFF812QGN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF888TRR bam bam unfiltered alignments GRCh38 ENCSR883NMO Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1131'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/58499/'], '@type': ['Target', 'Item'], 'name': 'ZNF462-human', 'label': 'ZNF462', '@id': '/targets/ZNF462-human/', 'title': 'ZNF462 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0d51ef48-d8d3-442d-a12a-38c14798b5e4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF899ZTI/, /files/ENCFF745DTX/ 4569668847 ENCODE Processing Pipeline 7f063e8eb774e33172ffd69f652b2b51 https://www.encodeproject.org/files/ENCFF888TRR/@@download/ENCFF888TRR.bam released s3://encode-public/2020/04/21/409007a5-1209-426c-ba12-b28218455ea5/ENCFF888TRR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF918KRT fastq fastq reads ENCSR139WZD Control ChIP-seq /fly-donors/ENCDO790ZSD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36763/'], '@type': ['Target', 'Item'], 'name': 'CG8388-dmelanogaster', 'label': 'CG8388', '@id': '/targets/CG8388-dmelanogaster/', 'title': 'CG8388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84f9da43-074f-4fdf-9c2e-bcb7699f3722', 'status': 'released'} dm3 2R 11881552 11899715 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1375825958 Kevin White, UChicago abed3e752bbf8f21f62bd2f77c3ae965 https://www.encodeproject.org/files/ENCFF918KRT/@@download/ENCFF918KRT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/6fc9c465-ede1-43e2-95ed-156f6e7ab806/ENCFF918KRT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF900AOV bam bam alignments dm6 ENCSR139WZD Control ChIP-seq /fly-donors/ENCDO790ZSD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36763/'], '@type': ['Target', 'Item'], 'name': 'CG8388-dmelanogaster', 'label': 'CG8388', '@id': '/targets/CG8388-dmelanogaster/', 'title': 'CG8388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84f9da43-074f-4fdf-9c2e-bcb7699f3722', 'status': 'released'} dm3 2R 11881552 11899715 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF918KRT/, /files/ENCFF479RCH/ 1840560267 Kevin White, UChicago 96fdb12c37db2c377ce14ea92c6f2cfa https://www.encodeproject.org/files/ENCFF900AOV/@@download/ENCFF900AOV.bam released s3://encode-public/2019/04/13/6ee32bce-66ec-47da-92a0-eadc917eb3ed/ENCFF900AOV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF576EHD bigWig bigWig read-depth normalized signal dm6 ENCSR139WZD Control ChIP-seq /fly-donors/ENCDO790ZSD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36763/'], '@type': ['Target', 'Item'], 'name': 'CG8388-dmelanogaster', 'label': 'CG8388', '@id': '/targets/CG8388-dmelanogaster/', 'title': 'CG8388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84f9da43-074f-4fdf-9c2e-bcb7699f3722', 'status': 'released'} dm3 2R 11881552 11899715 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF900AOV/ 17742733 Kevin White, UChicago 4243e3748a676dac4b6d2b47da9cdeff https://www.encodeproject.org/files/ENCFF576EHD/@@download/ENCFF576EHD.bigWig released s3://encode-public/2019/04/16/007971e5-11bd-42c8-8aea-0e5ce9f2f50c/ENCFF576EHD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF951HYL bigWig bigWig signal of unique reads dm6 ENCSR139WZD Control ChIP-seq /fly-donors/ENCDO790ZSD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36763/'], '@type': ['Target', 'Item'], 'name': 'CG8388-dmelanogaster', 'label': 'CG8388', '@id': '/targets/CG8388-dmelanogaster/', 'title': 'CG8388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84f9da43-074f-4fdf-9c2e-bcb7699f3722', 'status': 'released'} dm3 2R 11881552 11899715 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF900AOV/ 17832023 Kevin White, UChicago 1477fe3e07adaae13deee367a9c5e1c4 https://www.encodeproject.org/files/ENCFF951HYL/@@download/ENCFF951HYL.bigWig released s3://encode-public/2019/04/16/94a387e2-59d6-40c2-93cc-d09374cbc31e/ENCFF951HYL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HPW bam bam alignments hg19 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HQI/ 475419008 John Stamatoyannopoulos, UW 68304f92a458c781c2512552e097a28f https://www.encodeproject.org/files/ENCFF001HPW/@@download/ENCFF001HPW.bam archived s3://encode-public/2011/06/25/cbd35203-0238-46a0-9506-cc393accaaee/ENCFF001HPW.bam Lab custom hg19 archived low read length insufficient read depth ENCFF001HPX bigWig bigWig raw signal hg19 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HPW/ 112848099 John Stamatoyannopoulos, UW 11ba36aa3a9b9f5bf765c0ac614bb348 https://www.encodeproject.org/files/ENCFF001HPX/@@download/ENCFF001HPX.bigWig archived s3://encode-public/2011/06/25/2a14867f-701f-4b24-a5ff-b04f70ce74dd/ENCFF001HPX.bigWig Lab custom hg19 archived low read length insufficient read depth ENCFF001HQI fastq fastq reads ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 529373114 John Stamatoyannopoulos, UW 504d2cc3066df4d7f5086df169fc7f4f https://www.encodeproject.org/files/ENCFF001HQI/@@download/ENCFF001HQI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/71075237-64ed-4885-b0b0-f354fc11fe17/ENCFF001HQI.fastq.gz low read length insufficient read depth ENCFF712TPV bam bam unfiltered alignments GRCh38 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HQI/ 637416010 ENCODE Processing Pipeline 7fbbf53816d81e27cefb5435a6172558 https://www.encodeproject.org/files/ENCFF712TPV/@@download/ENCFF712TPV.bam released s3://encode-public/2016/08/09/8134f028-7b52-41be-854f-a6b4c5707bbf/ENCFF712TPV.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF272GNJ bam bam alignments GRCh38 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HQI/ 372213061 ENCODE Processing Pipeline eca540c996cb734f454441a1f4195238 https://www.encodeproject.org/files/ENCFF272GNJ/@@download/ENCFF272GNJ.bam released s3://encode-public/2016/08/09/a327e808-4abd-4cde-a413-d2d660d4fdd3/ENCFF272GNJ.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF747WXH bam bam unfiltered alignments hg19 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HQI/ 634044926 ENCODE Processing Pipeline e5996ae8690b17ed40769d5b24f21f05 https://www.encodeproject.org/files/ENCFF747WXH/@@download/ENCFF747WXH.bam released s3://encode-public/2016/11/13/fff57678-2980-40ba-b03e-2b6fb8c1e8a4/ENCFF747WXH.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF628PKL bam bam alignments hg19 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HQI/ 372345599 ENCODE Processing Pipeline adf44ff11041f60ed59755d9a11f456a https://www.encodeproject.org/files/ENCFF628PKL/@@download/ENCFF628PKL.bam released s3://encode-public/2016/11/13/63ad6251-2c2e-458f-932b-ba2aa7d8b07e/ENCFF628PKL.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF242HHM bam bam unfiltered alignments GRCh38 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HQI/, /files/ENCFF110MCL/ 625054470 ENCODE Processing Pipeline 04a0c106730f4f7bbdc97f2b63045cb1 https://www.encodeproject.org/files/ENCFF242HHM/@@download/ENCFF242HHM.bam released s3://encode-public/2020/09/03/8ffe9cbc-5a69-4353-b0db-c8343e6af725/ENCFF242HHM.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF669SAO bam bam alignments GRCh38 ENCSR000DUV Control ChIP-seq /human-donors/ENCDO236AAA/ CL:0002555 fibroblast of mammary gland primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HQI/, /files/ENCFF110MCL/ 391207564 ENCODE Processing Pipeline 73117f3ea16195b26c616e5f9092db93 https://www.encodeproject.org/files/ENCFF669SAO/@@download/ENCFF669SAO.bam released s3://encode-public/2020/09/03/07f5da96-009f-4408-b374-2b0d7e5c8530/ENCFF669SAO.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF000VII bigWig bigWig signal hg19 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 /files/ENCFF000VIJ/ 218859718 Peggy Farnham, USC 98f8479a6236fd2a5d48900abd1409f7 https://www.encodeproject.org/files/ENCFF000VII/@@download/ENCFF000VII.bigWig archived s3://encode-public/2011/03/22/38d8e98e-9cf7-466d-89f0-73104d315b65/ENCFF000VII.bigWig Lab custom hg19 archived insufficient read length ENCFF000VIJ bam bam alignments hg19 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000VJV/ 1108642239 Peggy Farnham, USC 72d7d70bd91906633de2d9e2ad82e845 https://www.encodeproject.org/files/ENCFF000VIJ/@@download/ENCFF000VIJ.bam archived s3://encode-public/2011/03/22/969ab686-3fff-44de-b5bd-598679af547a/ENCFF000VIJ.bam Lab custom hg19 archived insufficient read length ENCFF000VJV fastq fastq reads ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 single-ended 2372937714 Peggy Farnham, USC 880e1f44ed54e0e4ba525dc5c189ad5c https://www.encodeproject.org/files/ENCFF000VJV/@@download/ENCFF000VJV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/9a032485-bd6f-4516-a931-4ab255442885/ENCFF000VJV.fastq.gz insufficient read length ENCFF000ZMW bigWig bigWig signal hg19 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 /files/ENCFF000ZMZ/ 411977586 Peggy Farnham, USC 31944a6e1e7a26e2db65e482d14e3dcb https://www.encodeproject.org/files/ENCFF000ZMW/@@download/ENCFF000ZMW.bigWig archived s3://encode-public/2010/12/06/0301af14-dd1f-4063-b0cd-7e26651daf3d/ENCFF000ZMW.bigWig Lab custom hg19 archived insufficient read length ENCFF000ZMZ bam bam alignments hg19 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000ZNE/ 1574844403 Peggy Farnham, USC bd2122ae360bb6e86a1e5981aa8c8bb2 https://www.encodeproject.org/files/ENCFF000ZMZ/@@download/ENCFF000ZMZ.bam archived s3://encode-public/2010/12/06/5d309da8-65c6-4f5e-826b-001ec93da67b/ENCFF000ZMZ.bam Lab custom hg19 archived insufficient read length ENCFF000ZNE fastq fastq reads ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 single-ended 1207362649 Peggy Farnham, USC 06a8a8e43f203a30b04e704cf8b39fc6 https://www.encodeproject.org/files/ENCFF000ZNE/@@download/ENCFF000ZNE.fastq.gz Illumina Genome Analyzer archived s3://encode-public/2010/12/06/7002c0ea-52da-45c9-abd7-8824d73d71bd/ENCFF000ZNE.fastq.gz insufficient read length ENCFF585ORN bam bam unfiltered alignments GRCh38 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000VJV/, /files/ENCFF643CGH/ 3290199273 ENCODE Processing Pipeline aaf65fa101a171259a0e67db8008ba07 https://www.encodeproject.org/files/ENCFF585ORN/@@download/ENCFF585ORN.bam released s3://encode-public/2016/10/26/12868d99-d46b-4b4e-a881-5c4014582b7d/ENCFF585ORN.bam ENCODE3 GRCh38 archived insufficient read length ENCFF513RSP bam bam unfiltered alignments hg19 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000VJV/, /files/ENCFF807MUK/ 3274621880 ENCODE Processing Pipeline ecd7ac69ed766c6ef7b5f6d7986a7e82 https://www.encodeproject.org/files/ENCFF513RSP/@@download/ENCFF513RSP.bam released s3://encode-public/2016/10/26/9899e263-48b7-476c-abce-86cca59d84a4/ENCFF513RSP.bam ENCODE3 hg19 archived insufficient read length ENCFF205KMO bam bam alignments hg19 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000VJV/, /files/ENCFF807MUK/ 1896075260 ENCODE Processing Pipeline 56637d04ba401434be7c1bf56247353f https://www.encodeproject.org/files/ENCFF205KMO/@@download/ENCFF205KMO.bam released s3://encode-public/2016/10/26/316ab58b-7891-425e-8f13-0c0a3f6cbeea/ENCFF205KMO.bam ENCODE3 hg19 archived insufficient read length ENCFF293DEQ bam bam alignments GRCh38 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000VJV/, /files/ENCFF643CGH/ 1894671880 ENCODE Processing Pipeline 22b264b38ecd1f00a7d7109774451fcb https://www.encodeproject.org/files/ENCFF293DEQ/@@download/ENCFF293DEQ.bam released s3://encode-public/2016/10/26/b3c40c2e-ab00-421c-bb84-5034d438c703/ENCFF293DEQ.bam ENCODE3 GRCh38 archived insufficient read length ENCFF477EHH bam bam unfiltered alignments GRCh38 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000VJV/, /files/ENCFF110MCL/ 3174975886 ENCODE Processing Pipeline 6089c8031e675ccab90af7ddbb3bf986 https://www.encodeproject.org/files/ENCFF477EHH/@@download/ENCFF477EHH.bam released s3://encode-public/2020/09/03/bdf784ad-4b78-4a38-a775-585b9a327758/ENCFF477EHH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF280CZU bam bam alignments GRCh38 ENCSR000EXF Control ChIP-seq /human-donors/ENCDO000ADH/ EFO:0005236 NT2/D1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000VJV/, /files/ENCFF110MCL/ 1945260130 ENCODE Processing Pipeline 55c4bf537bc846e45c22d99d5bad16d4 https://www.encodeproject.org/files/ENCFF280CZU/@@download/ENCFF280CZU.bam released s3://encode-public/2020/09/03/9f4ff7c2-0ebf-4cf6-92b5-af58b18dc13e/ENCFF280CZU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF130CAW fastq fastq reads ENCSR512MTT Control ChIP-seq /fly-donors/ENCDO963FLT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37322/'], '@type': ['Target', 'Item'], 'name': 'CG13424-dmelanogaster', 'label': 'CG13424', '@id': '/targets/CG13424-dmelanogaster/', 'title': 'CG13424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37a26f4a-aa72-4265-b877-28392151bf37', 'status': 'released'} dm3 2R 16436805 16460974 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1050419427 Kevin White, UChicago 402dc48ae870fa19ef83764ad0985032 https://www.encodeproject.org/files/ENCFF130CAW/@@download/ENCFF130CAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/773d0641-f323-4ced-98a2-08a7801a7740/ENCFF130CAW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF439AMO bam bam alignments dm6 ENCSR512MTT Control ChIP-seq /fly-donors/ENCDO963FLT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37322/'], '@type': ['Target', 'Item'], 'name': 'CG13424-dmelanogaster', 'label': 'CG13424', '@id': '/targets/CG13424-dmelanogaster/', 'title': 'CG13424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37a26f4a-aa72-4265-b877-28392151bf37', 'status': 'released'} dm3 2R 16436805 16460974 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF130CAW/, /files/ENCFF479RCH/ 1403657473 Kevin White, UChicago 9f912220a248d81b0e7768e072a4179b https://www.encodeproject.org/files/ENCFF439AMO/@@download/ENCFF439AMO.bam released s3://encode-public/2019/04/13/484e8558-9e5c-4a20-8877-2747aec6e07b/ENCFF439AMO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF693CZS bigWig bigWig read-depth normalized signal dm6 ENCSR512MTT Control ChIP-seq /fly-donors/ENCDO963FLT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37322/'], '@type': ['Target', 'Item'], 'name': 'CG13424-dmelanogaster', 'label': 'CG13424', '@id': '/targets/CG13424-dmelanogaster/', 'title': 'CG13424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37a26f4a-aa72-4265-b877-28392151bf37', 'status': 'released'} dm3 2R 16436805 16460974 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF439AMO/ 17820852 Kevin White, UChicago 981d5a95e07c5d88da2dafa499025c16 https://www.encodeproject.org/files/ENCFF693CZS/@@download/ENCFF693CZS.bigWig released s3://encode-public/2019/04/16/d92c63c4-c843-4dce-8726-598fc06b54ae/ENCFF693CZS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF717FLI bigWig bigWig signal of unique reads dm6 ENCSR512MTT Control ChIP-seq /fly-donors/ENCDO963FLT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37322/'], '@type': ['Target', 'Item'], 'name': 'CG13424-dmelanogaster', 'label': 'CG13424', '@id': '/targets/CG13424-dmelanogaster/', 'title': 'CG13424 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37a26f4a-aa72-4265-b877-28392151bf37', 'status': 'released'} dm3 2R 16436805 16460974 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF439AMO/ 17788388 Kevin White, UChicago deecf36d3b32571138f82405b5c34b34 https://www.encodeproject.org/files/ENCFF717FLI/@@download/ENCFF717FLI.bigWig released s3://encode-public/2019/04/16/342de7a5-8d18-43a0-9a9c-eda905d0e5a5/ENCFF717FLI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HMG bam bam alignments hg19 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HMS/ 654381461 John Stamatoyannopoulos, UW 281d52b97200a80ef67671cdc3ec54ef https://www.encodeproject.org/files/ENCFF001HMG/@@download/ENCFF001HMG.bam archived s3://encode-public/2011/06/25/5d33e511-0e54-4c9f-8b1c-ef21a1d7bc69/ENCFF001HMG.bam Lab custom hg19 archived low read depth, low read length ENCFF001HMH bigWig bigWig raw signal hg19 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HMG/ 150033401 John Stamatoyannopoulos, UW f7c49cc0f99570ba15bfbb51d96865c3 https://www.encodeproject.org/files/ENCFF001HMH/@@download/ENCFF001HMH.bigWig archived s3://encode-public/2011/06/25/e7889817-2530-45b0-9a11-5bf793d06f3d/ENCFF001HMH.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HMS fastq fastq reads ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 715774616 John Stamatoyannopoulos, UW af54e1125e011afc9508bed0c76e9748 https://www.encodeproject.org/files/ENCFF001HMS/@@download/ENCFF001HMS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/b4b289c4-1603-4517-a37e-26b85315fb7c/ENCFF001HMS.fastq.gz low read depth, low read length ENCFF008DOI bam bam unfiltered alignments GRCh38 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HMS/, /files/ENCFF643CGH/ 863952943 ENCODE Processing Pipeline c0e912dd42c11e1a10b03e10c4c8d2c4 https://www.encodeproject.org/files/ENCFF008DOI/@@download/ENCFF008DOI.bam released s3://encode-public/2016/08/09/e597e593-0dcb-4bae-bf6b-df2f25c46393/ENCFF008DOI.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF255XVF bam bam alignments GRCh38 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HMS/, /files/ENCFF643CGH/ 568311462 ENCODE Processing Pipeline 30853177985ff01431d46923fab53bf7 https://www.encodeproject.org/files/ENCFF255XVF/@@download/ENCFF255XVF.bam released s3://encode-public/2016/08/09/ab132d3e-2925-4536-ab79-7ec7797b83a9/ENCFF255XVF.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF643VRW bam bam unfiltered alignments hg19 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HMS/, /files/ENCFF807MUK/ 859630589 ENCODE Processing Pipeline b3c543a1f50fb793b4ea12990b165563 https://www.encodeproject.org/files/ENCFF643VRW/@@download/ENCFF643VRW.bam released s3://encode-public/2016/11/13/49e3fc61-4ae7-4b05-b330-33c78f0333b9/ENCFF643VRW.bam ENCODE3 hg19 archived low read depth, low read length ENCFF145CAZ bam bam alignments hg19 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HMS/, /files/ENCFF807MUK/ 568447254 ENCODE Processing Pipeline 797ba158b5320d0063873de457fdf9b8 https://www.encodeproject.org/files/ENCFF145CAZ/@@download/ENCFF145CAZ.bam released s3://encode-public/2016/11/13/b70c4dad-bb83-4e3b-a18a-0ec0d1aade42/ENCFF145CAZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF220MMW bam bam alignments GRCh38 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HMS/, /files/ENCFF110MCL/ 607776950 ENCODE Processing Pipeline c3b7bff75a0c9ec8dc4794444c4f1aa3 https://www.encodeproject.org/files/ENCFF220MMW/@@download/ENCFF220MMW.bam released s3://encode-public/2020/09/03/aae49735-6105-4685-a819-8553e896ec6d/ENCFF220MMW.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF910QRN bam bam unfiltered alignments GRCh38 ENCSR000DTS Control ChIP-seq /human-donors/ENCDO104AAA/ CL:0002252 epithelial cell of esophagus primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HMS/, /files/ENCFF110MCL/ 849710235 ENCODE Processing Pipeline cee616015dc946d009fb174359611d74 https://www.encodeproject.org/files/ENCFF910QRN/@@download/ENCFF910QRN.bam released s3://encode-public/2020/09/03/68031d8e-e19f-4bf2-b23b-d030272717b8/ENCFF910QRN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001HXE bam bam alignments hg19 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HXQ/ 762192753 John Stamatoyannopoulos, UW d5d191f1e9ca99b3e1121a9fd05ec28b https://www.encodeproject.org/files/ENCFF001HXE/@@download/ENCFF001HXE.bam archived s3://encode-public/2011/06/25/48b59192-8724-47f8-956a-935b98c2af13/ENCFF001HXE.bam Lab custom hg19 archived low read depth, low read length ENCFF001HXG bigWig bigWig raw signal hg19 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HXE/ 168314157 John Stamatoyannopoulos, UW c24dc727e08cc3428b424d9b61349693 https://www.encodeproject.org/files/ENCFF001HXG/@@download/ENCFF001HXG.bigWig archived s3://encode-public/2011/06/25/5eb52162-4438-4846-a5cc-80c66b9b2be0/ENCFF001HXG.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HXQ fastq fastq reads ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 788659469 John Stamatoyannopoulos, UW 3766c543d26ae6867bbf7a0b84b10e22 https://www.encodeproject.org/files/ENCFF001HXQ/@@download/ENCFF001HXQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/20b3b554-913c-4a6d-b0b5-7b1b98339200/ENCFF001HXQ.fastq.gz low read depth, low read length ENCFF713HLH bam bam unfiltered alignments GRCh38 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HXQ/ 964778109 ENCODE Processing Pipeline ff8f358837140251d7bd6aa755ac1390 https://www.encodeproject.org/files/ENCFF713HLH/@@download/ENCFF713HLH.bam released s3://encode-public/2016/08/09/faaa7984-930d-4720-9ef8-8aebadcf2150/ENCFF713HLH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF854RRT bam bam alignments GRCh38 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HXQ/ 695504342 ENCODE Processing Pipeline cb9b7226e38ba0f89b2e3ccc6805bb7b https://www.encodeproject.org/files/ENCFF854RRT/@@download/ENCFF854RRT.bam released s3://encode-public/2016/08/09/436fd6d6-a472-4d3d-abf8-dafcf6a94f6b/ENCFF854RRT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF194QOM bam bam unfiltered alignments hg19 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HXQ/ 959460279 ENCODE Processing Pipeline e9e6809ef78ebedc752c42c9e985712d https://www.encodeproject.org/files/ENCFF194QOM/@@download/ENCFF194QOM.bam released s3://encode-public/2016/11/13/9425dcd6-1248-401c-b6bf-e493a1ff9c66/ENCFF194QOM.bam ENCODE3 hg19 archived low read depth, low read length ENCFF003YND bam bam alignments hg19 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HXQ/ 695827584 ENCODE Processing Pipeline ec4c021a02a5b112bfe286cb472af01b https://www.encodeproject.org/files/ENCFF003YND/@@download/ENCFF003YND.bam released s3://encode-public/2016/11/13/22c47d4b-3e58-4a4f-8248-6b14fe67c67b/ENCFF003YND.bam ENCODE3 hg19 archived low read depth, low read length ENCFF323ZIK bam bam unfiltered alignments GRCh38 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HXQ/ 940357784 ENCODE Processing Pipeline 50495ea161964cb68a6d1bba31022259 https://www.encodeproject.org/files/ENCFF323ZIK/@@download/ENCFF323ZIK.bam released s3://encode-public/2020/09/03/cc1e856d-8403-4b5e-bb50-21690db56548/ENCFF323ZIK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF680JFL bam bam alignments GRCh38 ENCSR000DXM Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HXQ/ 758445307 ENCODE Processing Pipeline 8bb0ff37833a4b0b17c16fc5427f7664 https://www.encodeproject.org/files/ENCFF680JFL/@@download/ENCFF680JFL.bam released s3://encode-public/2020/09/03/5fe8510f-c547-46b6-9df0-882466765997/ENCFF680JFL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001GWT bam bam alignments hg19 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXE/ 930343451 John Stamatoyannopoulos, UW 7f4e3b368922860a5add9f457fd9d796 https://www.encodeproject.org/files/ENCFF001GWT/@@download/ENCFF001GWT.bam archived s3://encode-public/2011/06/25/59a54888-503e-42c6-855e-e2bd08610bf1/ENCFF001GWT.bam Lab custom hg19 archived low read depth, low read length ENCFF001GWU bigWig bigWig raw signal hg19 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001GWT/ 185708138 John Stamatoyannopoulos, UW 0a3a53897dfe72778b36364921116d37 https://www.encodeproject.org/files/ENCFF001GWU/@@download/ENCFF001GWU.bigWig archived s3://encode-public/2011/06/25/ff696658-26ca-4ccc-b250-2f205e5c34e3/ENCFF001GWU.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001GXE fastq fastq reads ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 985072339 John Stamatoyannopoulos, UW e0bec880cb2f821ef482ddd53f3691d2 https://www.encodeproject.org/files/ENCFF001GXE/@@download/ENCFF001GXE.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/a94ed541-7054-4aba-b2c9-c11c90f0bb9b/ENCFF001GXE.fastq.gz low read depth, low read length ENCFF602KDF bam bam unfiltered alignments GRCh38 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GXE/ 1165975280 ENCODE Processing Pipeline e116b6636d87e28cf209145da309fc4b https://www.encodeproject.org/files/ENCFF602KDF/@@download/ENCFF602KDF.bam released s3://encode-public/2016/07/13/89383b60-f974-427a-9c98-c2e3425c370e/ENCFF602KDF.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF732CPP bam bam alignments GRCh38 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GXE/ 846134905 ENCODE Processing Pipeline 603113d12825e6081bd3e767d58308ea https://www.encodeproject.org/files/ENCFF732CPP/@@download/ENCFF732CPP.bam released s3://encode-public/2016/07/13/c9ed3dcd-2b3a-44cf-be9e-e980d4e074e2/ENCFF732CPP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF883GTU bam bam unfiltered alignments hg19 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GXE/ 1159352225 ENCODE Processing Pipeline f35a258a3896771ae1e64d36bb0529c0 https://www.encodeproject.org/files/ENCFF883GTU/@@download/ENCFF883GTU.bam released s3://encode-public/2016/11/13/ee61b189-afef-4d84-a624-e9f0a7408b4e/ENCFF883GTU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF864XXG bam bam alignments hg19 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GXE/ 846393347 ENCODE Processing Pipeline 62bf33dc5e7c9501c7a3d86f81366a6a https://www.encodeproject.org/files/ENCFF864XXG/@@download/ENCFF864XXG.bam released s3://encode-public/2016/11/13/4c4f1d8b-beb0-4201-b06c-646a519fff26/ENCFF864XXG.bam ENCODE3 hg19 archived low read depth, low read length ENCFF684FPG bam bam unfiltered alignments GRCh38 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GXE/ 1157413245 ENCODE Processing Pipeline 626080d4fa2934d20375e5652848feb1 https://www.encodeproject.org/files/ENCFF684FPG/@@download/ENCFF684FPG.bam released s3://encode-public/2020/09/03/ce5d0f81-9522-42da-8c6e-5bbcdaaafc9a/ENCFF684FPG.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF253PEY bam bam alignments GRCh38 ENCSR000DPN Control ChIP-seq /human-donors/ENCDO001AAA/ EFO:0006270 AG04450 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GXE/ 903583161 ENCODE Processing Pipeline b9fdc93813905fef8c478793ece29577 https://www.encodeproject.org/files/ENCFF253PEY/@@download/ENCFF253PEY.bam released s3://encode-public/2020/09/03/e0775001-00c6-446d-9c13-3e143e3d33de/ENCFF253PEY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001KIE bam bam alignments mm9 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KIM/ 348908056 Bing Ren, UCSD feb02168f8c85b2e60ad19543ba83878 https://www.encodeproject.org/files/ENCFF001KIE/@@download/ENCFF001KIE.bam archived s3://encode-public/2011/12/23/50c535ce-19a2-4fa8-bf87-7b75d63397ec/ENCFF001KIE.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KIG bam bam alignments mm9 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KIL/ 640917556 Bing Ren, UCSD be4c2edd96dd39e292050f2798c2bb16 https://www.encodeproject.org/files/ENCFF001KIG/@@download/ENCFF001KIG.bam archived s3://encode-public/2011/12/23/12535588-0883-4bc0-9ee0-59e76f7175cd/ENCFF001KIG.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KIH bigWig bigWig signal mm9 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KIG/, /files/ENCFF001KIE/ 65388984 Bing Ren, UCSD 60f1994aa5a22524f6251db08c27d726 https://www.encodeproject.org/files/ENCFF001KIH/@@download/ENCFF001KIH.bigWig archived s3://encode-public/2011/12/23/966ffc9f-0cae-4c3e-b3bb-1028efd2e936/ENCFF001KIH.bigWig Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KIL fastq fastq reads ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 single-ended 657334146 Bing Ren, UCSD 3dc2646edfdf410eb74632b274b96965 https://www.encodeproject.org/files/ENCFF001KIL/@@download/ENCFF001KIL.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/d04f6ac7-2074-4703-87e8-8eeef5b2b1eb/ENCFF001KIL.fastq.gz low read depth, low read length insufficient read depth ENCFF001KIM fastq fastq reads ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 single-ended 891353581 Bing Ren, UCSD 0eb84a19e73777eb3515637a9dc6955b https://www.encodeproject.org/files/ENCFF001KIM/@@download/ENCFF001KIM.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/42dd435b-9044-46e6-b463-0fcd4eef6f81/ENCFF001KIM.fastq.gz low read depth, low read length insufficient read depth ENCFF628EZY bam bam unfiltered alignments mm10-minimal ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KIL/, /files/ENCFF806TVZ/ 770572990 J. Michael Cherry, Stanford 025ba9253956edca3b8ae635681d5b5b https://www.encodeproject.org/files/ENCFF628EZY/@@download/ENCFF628EZY.bam archived s3://encode-public/2015/02/04/bc220c1d-a566-4cd2-9fa3-c94992317568/ENCFF628EZY.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF507VIZ bam bam unfiltered alignments mm10-minimal ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KIM/, /files/ENCFF806TVZ/ 963610376 J. 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released low read depth, low read length insufficient read depth ENCFF026TPH bam bam alignments mm10 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 33 /files/ENCFF309GLL/, /files/ENCFF001KIL/ 522403667 ENCODE Processing Pipeline 95dab79bee355cec4eb7543df051d6c2 https://www.encodeproject.org/files/ENCFF026TPH/@@download/ENCFF026TPH.bam released s3://encode-public/2020/10/12/22ad5024-1a86-4e4f-b506-a573a7f8173f/ENCFF026TPH.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF665KJE bam bam unfiltered alignments mm10 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 33 /files/ENCFF309GLL/, /files/ENCFF001KIM/ 909303333 ENCODE Processing Pipeline 9a4760f888e9e75c1c821d67babab662 https://www.encodeproject.org/files/ENCFF665KJE/@@download/ENCFF665KJE.bam released s3://encode-public/2020/10/12/1e8c3886-a136-4532-8401-32e4e65449ed/ENCFF665KJE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF925TYC bam bam alignments mm10 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 33 /files/ENCFF309GLL/, /files/ENCFF001KIM/ 376042546 ENCODE Processing Pipeline 6f3621a1b9123ba7fe94f68cbd713d76 https://www.encodeproject.org/files/ENCFF925TYC/@@download/ENCFF925TYC.bam released s3://encode-public/2020/10/12/7505ada1-2eea-4df8-ae43-eb2567924e38/ENCFF925TYC.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF653CBC bam bam unfiltered alignments mm10 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KIM/, /files/ENCFF309GLL/ 952101618 ENCODE Processing Pipeline 311481914ddebdeca88a797d443cfc44 https://www.encodeproject.org/files/ENCFF653CBC/@@download/ENCFF653CBC.bam released s3://encode-public/2020/10/12/1e5322ce-0844-4631-9b73-bbc94663ec27/ENCFF653CBC.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF987QAW bam bam unfiltered alignments mm10 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KIL/, /files/ENCFF309GLL/ 759837092 ENCODE Processing Pipeline 710a962a8229fee22913a7ef59a6f5e5 https://www.encodeproject.org/files/ENCFF987QAW/@@download/ENCFF987QAW.bam released s3://encode-public/2020/10/12/84cbf3ef-34bd-4db4-b06d-b5cb9e014eb1/ENCFF987QAW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF658HML bam bam alignments mm10 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KIM/, /files/ENCFF309GLL/ 377087935 ENCODE Processing Pipeline c44555a52910b165336326a580b946c5 https://www.encodeproject.org/files/ENCFF658HML/@@download/ENCFF658HML.bam released s3://encode-public/2020/10/12/798350fa-a442-4f55-9cc0-0717654929da/ENCFF658HML.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF985AJN bam bam alignments mm10 ENCSR000CAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KIL/, /files/ENCFF309GLL/ 547889224 ENCODE Processing Pipeline 7509e6f1276e27a5a5ff8d84923a40d6 https://www.encodeproject.org/files/ENCFF985AJN/@@download/ENCFF985AJN.bam released s3://encode-public/2020/10/12/e7140ad4-31e9-4e08-a643-e9e3d8a2135e/ENCFF985AJN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF049TPD fastq fastq reads ENCSR222HUE Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 522513878 Kevin White, UChicago 56a21284ec8aaf73ff6859a0718e9981 https://www.encodeproject.org/files/ENCFF049TPD/@@download/ENCFF049TPD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/7a9ad0df-e8a4-4398-bc9f-46321a783881/ENCFF049TPD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF414GFL bam bam alignments ce10 ENCSR222HUE Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF049TPD/ 752598815 Kevin White, UChicago b1a058749b6bcc2e0e3fa05d7c4e6e7e https://www.encodeproject.org/files/ENCFF414GFL/@@download/ENCFF414GFL.bam released s3://encode-public/2015/08/07/d3c4924c-4608-4ad3-bd72-566914ffdac2/ENCFF414GFL.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF940MPQ bigWig bigWig read-depth normalized signal ce10 ENCSR222HUE Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF414GFL/ 9972180 Kevin White, UChicago eb77217cf66e0fe3374b9153228041ae https://www.encodeproject.org/files/ENCFF940MPQ/@@download/ENCFF940MPQ.bigWig released s3://encode-public/2015/10/02/0b18de17-3836-4337-b2cc-19dd43bfffb7/ENCFF940MPQ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF069ODI bigWig bigWig signal of unique reads ce10 ENCSR222HUE Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF414GFL/ 9967027 Kevin White, UChicago daa43a8cd8864e8b6ccb03fbd58cf7c8 https://www.encodeproject.org/files/ENCFF069ODI/@@download/ENCFF069ODI.bigWig released s3://encode-public/2015/10/02/d8e44e98-dacb-4b49-8a64-2d5b2a33fbeb/ENCFF069ODI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF283TEO bam bam alignments ce11 ENCSR222HUE Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF049TPD/ 753248476 Kevin White, UChicago 331c22f41b61c89e31c2d3ef3e0e9193 https://www.encodeproject.org/files/ENCFF283TEO/@@download/ENCFF283TEO.bam released s3://encode-public/2016/01/19/18c21bb0-15d8-416e-8fe4-b7cac5bfdf44/ENCFF283TEO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF956COQ bigWig bigWig signal of unique reads ce11 ENCSR222HUE Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF283TEO/ 9963165 Kevin White, UChicago abede2278d776bd8352225a18f2f3d94 https://www.encodeproject.org/files/ENCFF956COQ/@@download/ENCFF956COQ.bigWig released s3://encode-public/2016/02/03/e685a5ce-268c-4e5f-82c2-035bfcd70c0d/ENCFF956COQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF221SPG bigWig bigWig read-depth normalized signal ce11 ENCSR222HUE Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF283TEO/ 9966639 Kevin White, UChicago 78b60c594af704b1a5bd3b6c81cbb315 https://www.encodeproject.org/files/ENCFF221SPG/@@download/ENCFF221SPG.bigWig released s3://encode-public/2016/02/03/78ed430f-007a-4edf-ad12-5a8b45132080/ENCFF221SPG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF818SOK fastq fastq reads ENCSR437EAS Control ChIP-seq /worm-donors/ENCDO430OKE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181249/'], '@type': ['Target', 'Item'], 'name': 'elt-4-celegans', 'label': 'elt-4', '@id': '/targets/elt-4-celegans/', 'title': 'elt-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '519bd386-bb66-461a-91f1-51901908c4ff', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 620538915 Kevin White, UChicago 1f842782720e64564ce52c9f41fdf06b https://www.encodeproject.org/files/ENCFF818SOK/@@download/ENCFF818SOK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/9cbddaf9-af1a-48b6-982d-0d368ecd1d57/ENCFF818SOK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF245MPV bam bam alignments ce10 ENCSR437EAS Control ChIP-seq /worm-donors/ENCDO430OKE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181249/'], '@type': ['Target', 'Item'], 'name': 'elt-4-celegans', 'label': 'elt-4', '@id': '/targets/elt-4-celegans/', 'title': 'elt-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '519bd386-bb66-461a-91f1-51901908c4ff', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF818SOK/ 898517432 Kevin White, UChicago 42a5c3b0e62dde1dff39e1da28af30b9 https://www.encodeproject.org/files/ENCFF245MPV/@@download/ENCFF245MPV.bam released s3://encode-public/2015/08/19/202b86ee-f1cf-4156-99a3-36ae717fa21b/ENCFF245MPV.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF309KHX bigWig bigWig read-depth normalized signal ce10 ENCSR437EAS Control ChIP-seq /worm-donors/ENCDO430OKE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181249/'], '@type': ['Target', 'Item'], 'name': 'elt-4-celegans', 'label': 'elt-4', '@id': '/targets/elt-4-celegans/', 'title': 'elt-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '519bd386-bb66-461a-91f1-51901908c4ff', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF245MPV/ 9982807 Kevin White, UChicago dd5af594dd1ed4ad7ee424892454ffa1 https://www.encodeproject.org/files/ENCFF309KHX/@@download/ENCFF309KHX.bigWig released s3://encode-public/2015/10/02/2559509c-6a86-4a6f-a67c-d09078ff57db/ENCFF309KHX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF490LBN bigWig bigWig signal of unique reads ce10 ENCSR437EAS Control ChIP-seq /worm-donors/ENCDO430OKE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181249/'], '@type': ['Target', 'Item'], 'name': 'elt-4-celegans', 'label': 'elt-4', '@id': '/targets/elt-4-celegans/', 'title': 'elt-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '519bd386-bb66-461a-91f1-51901908c4ff', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF245MPV/ 9974007 Kevin White, UChicago dc052ad4ed55ae791fc95789a7f28606 https://www.encodeproject.org/files/ENCFF490LBN/@@download/ENCFF490LBN.bigWig released s3://encode-public/2015/10/02/e50d654b-23f4-4f16-9eb4-8bd3924bb39f/ENCFF490LBN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF523DZV bam bam alignments ce11 ENCSR437EAS Control ChIP-seq /worm-donors/ENCDO430OKE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181249/'], '@type': ['Target', 'Item'], 'name': 'elt-4-celegans', 'label': 'elt-4', '@id': '/targets/elt-4-celegans/', 'title': 'elt-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '519bd386-bb66-461a-91f1-51901908c4ff', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF818SOK/ 899305901 Kevin White, UChicago 0be6e94370c08583211c04140fa47fd9 https://www.encodeproject.org/files/ENCFF523DZV/@@download/ENCFF523DZV.bam released s3://encode-public/2016/01/16/41ccf935-b8de-486e-bcbb-88f4fa766cb4/ENCFF523DZV.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF370UBX bigWig bigWig signal of unique reads ce11 ENCSR437EAS Control ChIP-seq /worm-donors/ENCDO430OKE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181249/'], '@type': ['Target', 'Item'], 'name': 'elt-4-celegans', 'label': 'elt-4', '@id': '/targets/elt-4-celegans/', 'title': 'elt-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '519bd386-bb66-461a-91f1-51901908c4ff', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF523DZV/ 9965794 Kevin White, UChicago 1cf3c6361e2ecbd3eceeeacc00d0fccc https://www.encodeproject.org/files/ENCFF370UBX/@@download/ENCFF370UBX.bigWig released s3://encode-public/2016/02/03/c9dfdb4d-577c-4d08-a5be-6f17f7498f3e/ENCFF370UBX.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF183KNF bigWig bigWig read-depth normalized signal ce11 ENCSR437EAS Control ChIP-seq /worm-donors/ENCDO430OKE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181249/'], '@type': ['Target', 'Item'], 'name': 'elt-4-celegans', 'label': 'elt-4', '@id': '/targets/elt-4-celegans/', 'title': 'elt-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '519bd386-bb66-461a-91f1-51901908c4ff', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF523DZV/ 9969446 Kevin White, UChicago 19185b3d0dfea256c4d171e43d44bfa2 https://www.encodeproject.org/files/ENCFF183KNF/@@download/ENCFF183KNF.bigWig released s3://encode-public/2016/02/03/cd2e62cc-7614-4349-a28c-40510803dd9a/ENCFF183KNF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF778QQW bigWig bigWig read-depth normalized signal dm6 ENCSR130GIJ Control ChIP-seq /fly-donors/ENCDO909YHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47718/'], '@type': ['Target', 'Item'], 'name': 'CG17829-dmelanogaster', 'label': 'CG17829', '@id': '/targets/CG17829-dmelanogaster/', 'title': 'CG17829 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'd1d1acb4-da1d-41f6-bd5c-dc5a633ca147', 'status': 'released'} dm3 X 512795 532353 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF639HHF/ 17690995 Kevin White, UChicago 0a3afd1f6680d0273401c63075f71dbb https://www.encodeproject.org/files/ENCFF778QQW/@@download/ENCFF778QQW.bigWig released s3://encode-public/2019/06/18/04eafd43-d120-4063-9cc4-d2a261c3914b/ENCFF778QQW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF183KQC fastq fastq reads ENCSR130GIJ Control ChIP-seq /fly-donors/ENCDO909YHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47718/'], '@type': ['Target', 'Item'], 'name': 'CG17829-dmelanogaster', 'label': 'CG17829', '@id': '/targets/CG17829-dmelanogaster/', 'title': 'CG17829 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'd1d1acb4-da1d-41f6-bd5c-dc5a633ca147', 'status': 'released'} dm3 X 512795 532353 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 753894977 Kevin White, UChicago 220b6c8b455a55b28ea7b7aa08dbffc3 https://www.encodeproject.org/files/ENCFF183KQC/@@download/ENCFF183KQC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/b4c3d4b2-e144-456a-9408-1e6941504d3e/ENCFF183KQC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF639HHF bam bam alignments dm6 ENCSR130GIJ Control ChIP-seq /fly-donors/ENCDO909YHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47718/'], '@type': ['Target', 'Item'], 'name': 'CG17829-dmelanogaster', 'label': 'CG17829', '@id': '/targets/CG17829-dmelanogaster/', 'title': 'CG17829 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'd1d1acb4-da1d-41f6-bd5c-dc5a633ca147', 'status': 'released'} dm3 X 512795 532353 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF183KQC/, /files/ENCFF479RCH/ 1010703764 Kevin White, UChicago ec57dba1a8827caad8a9fd37d3545404 https://www.encodeproject.org/files/ENCFF639HHF/@@download/ENCFF639HHF.bam released s3://encode-public/2019/06/18/d5e6ac31-b03e-4e10-bb1a-016dcad23323/ENCFF639HHF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF118DJI bigWig bigWig signal of unique reads dm6 ENCSR130GIJ Control ChIP-seq /fly-donors/ENCDO909YHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47718/'], '@type': ['Target', 'Item'], 'name': 'CG17829-dmelanogaster', 'label': 'CG17829', '@id': '/targets/CG17829-dmelanogaster/', 'title': 'CG17829 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'd1d1acb4-da1d-41f6-bd5c-dc5a633ca147', 'status': 'released'} dm3 X 512795 532353 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF639HHF/ 17684421 Kevin White, UChicago 9cd6b624760714a6ca33f9958fbe8b76 https://www.encodeproject.org/files/ENCFF118DJI/@@download/ENCFF118DJI.bigWig released s3://encode-public/2019/06/18/f69b2cbf-2378-4e59-88d4-6e054e3da226/ENCFF118DJI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF709BAX fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 918766300 Bradley Bernstein, Broad 2bf15329385b7041e63c1248b4cafa3a SRA:SRR10838333 https://www.encodeproject.org/files/ENCFF709BAX/@@download/ENCFF709BAX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/d49061d4-35d0-4bf0-9a8e-97556f00c534/ENCFF709BAX.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF128UXV fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 719641356 Bradley Bernstein, Broad 75782c091b263faf046f1d72be39b2fc SRA:SRR10838334 https://www.encodeproject.org/files/ENCFF128UXV/@@download/ENCFF128UXV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/5b439cfd-f390-47b3-ab29-b92b723bb8b9/ENCFF128UXV.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF982YKD fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 901360300 Bradley Bernstein, Broad 26bd104bd757bc4e5083960eadbbe962 SRA:SRR10838335 https://www.encodeproject.org/files/ENCFF982YKD/@@download/ENCFF982YKD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/a5d2878b-51b4-4c0a-96a5-cdd3f2e53e9f/ENCFF982YKD.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF156FRX fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 702500878 Bradley Bernstein, Broad f85b57d7f3a533fd02b82605fa999ea9 SRA:SRR10838336 https://www.encodeproject.org/files/ENCFF156FRX/@@download/ENCFF156FRX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/cecac7ff-63f0-45e7-9042-ce0921e3d685/ENCFF156FRX.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF189XAT fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 799795531 Bradley Bernstein, Broad e5328b887ee808436991098520e84adf SRA:SRR10838329 https://www.encodeproject.org/files/ENCFF189XAT/@@download/ENCFF189XAT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/542ac5a6-cac3-4464-a1b2-42d2bb1b97a8/ENCFF189XAT.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF940ZBZ fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 814115481 Bradley Bernstein, Broad 2684f468f9a4725c41d5732399d287ff SRA:SRR10838330 https://www.encodeproject.org/files/ENCFF940ZBZ/@@download/ENCFF940ZBZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/5ff6af37-48c6-44bc-be15-5e96ace772d6/ENCFF940ZBZ.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF542VAB fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 538047566 Bradley Bernstein, Broad 8f7d38d5c5800d7b2b27006f0464960e SRA:SRR10838331 https://www.encodeproject.org/files/ENCFF542VAB/@@download/ENCFF542VAB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/64df7b21-8490-42a6-835a-65545f512ba4/ENCFF542VAB.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF161GJB fastq fastq reads ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 551168789 Bradley Bernstein, Broad 4e077923a4076255f6087883370e60cc SRA:SRR10838332 https://www.encodeproject.org/files/ENCFF161GJB/@@download/ENCFF161GJB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/a140d1d4-5f32-4bd6-8c89-65ea856c0be1/ENCFF161GJB.fastq.gz mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF584UYW bam bam alignments GRCh38 ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF189XAT/, /files/ENCFF542VAB/, /files/ENCFF940ZBZ/, /files/ENCFF709BAX/, /files/ENCFF982YKD/, /files/ENCFF161GJB/, /files/ENCFF156FRX/, /files/ENCFF128UXV/ 2052522775 ENCODE Processing Pipeline f8a920bbab6ffde5c89999c9b8558d13 https://www.encodeproject.org/files/ENCFF584UYW/@@download/ENCFF584UYW.bam released s3://encode-public/2019/02/07/c299a9bf-0695-4279-9151-35722dafa806/ENCFF584UYW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF343ZNO bam bam unfiltered alignments GRCh38 ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF189XAT/, /files/ENCFF542VAB/, /files/ENCFF940ZBZ/, /files/ENCFF709BAX/, /files/ENCFF982YKD/, /files/ENCFF161GJB/, /files/ENCFF156FRX/, /files/ENCFF128UXV/ 5283301752 ENCODE Processing Pipeline cb8557f210b361058ece2a9182731e62 https://www.encodeproject.org/files/ENCFF343ZNO/@@download/ENCFF343ZNO.bam released s3://encode-public/2019/02/07/ca73389a-2b14-4816-a939-5bf5aaa7979e/ENCFF343ZNO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF943FXD bam bam alignments hg19 ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF189XAT/, /files/ENCFF542VAB/, /files/ENCFF940ZBZ/, /files/ENCFF807MUK/, /files/ENCFF709BAX/, /files/ENCFF982YKD/, /files/ENCFF161GJB/, /files/ENCFF156FRX/, /files/ENCFF128UXV/ 2049645981 ENCODE Processing Pipeline 15b062fd3bcc96181deafb682284d911 https://www.encodeproject.org/files/ENCFF943FXD/@@download/ENCFF943FXD.bam released s3://encode-public/2019/02/07/6df6f34f-0daf-4fb8-bcf8-6ec34487b06f/ENCFF943FXD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF139BYI bam bam unfiltered alignments hg19 ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF189XAT/, /files/ENCFF542VAB/, /files/ENCFF940ZBZ/, /files/ENCFF807MUK/, /files/ENCFF709BAX/, /files/ENCFF982YKD/, /files/ENCFF161GJB/, /files/ENCFF156FRX/, /files/ENCFF128UXV/ 5276586360 ENCODE Processing Pipeline 07eaec45d12bf76616870a382be4666e https://www.encodeproject.org/files/ENCFF139BYI/@@download/ENCFF139BYI.bam released s3://encode-public/2019/02/07/941a8149-e466-4f4e-93a2-e417a130f61f/ENCFF139BYI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF416XMV bam bam unfiltered alignments GRCh38 ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF156FRX/, /files/ENCFF709BAX/, /files/ENCFF542VAB/, /files/ENCFF110MCL/, /files/ENCFF189XAT/, /files/ENCFF128UXV/, /files/ENCFF940ZBZ/, /files/ENCFF161GJB/, /files/ENCFF982YKD/ 5327858188 ENCODE Processing Pipeline a73a36b02d1af522cff9b9f1cb885f21 https://www.encodeproject.org/files/ENCFF416XMV/@@download/ENCFF416XMV.bam released s3://encode-public/2020/09/19/90dee300-7c3f-49e4-9559-115f7d08cb57/ENCFF416XMV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF962MQN bam bam alignments GRCh38 ENCSR728EIP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF156FRX/, /files/ENCFF709BAX/, /files/ENCFF542VAB/, /files/ENCFF110MCL/, /files/ENCFF189XAT/, /files/ENCFF128UXV/, /files/ENCFF940ZBZ/, /files/ENCFF161GJB/, /files/ENCFF982YKD/ 2082196742 ENCODE Processing Pipeline 282db0487c853c400573596e88f55e01 https://www.encodeproject.org/files/ENCFF962MQN/@@download/ENCFF962MQN.bam released s3://encode-public/2020/09/19/dda52279-478e-4a43-b7e5-aafe6fa576f4/ENCFF962MQN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity severe bottlenecking ENCFF080DAK fastq fastq reads ENCSR774SAN Control ChIP-seq /fly-donors/ENCDO113AZK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3346145/'], '@type': ['Target', 'Item'], 'name': 'CG33557-dmelanogaster', 'label': 'CG33557', '@id': '/targets/CG33557-dmelanogaster/', 'title': 'CG33557 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4e5f29-0a5a-49c3-aecc-72a5771507dc', 'status': 'released'} dm3 X 9885105 9906218 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1047779039 Kevin White, UChicago 41f8ea5c72c63fb17256420abad11342 https://www.encodeproject.org/files/ENCFF080DAK/@@download/ENCFF080DAK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/be748f43-2156-43e4-a2c7-a388bda4d4f3/ENCFF080DAK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF523KDJ bam bam alignments dm6 ENCSR774SAN Control ChIP-seq /fly-donors/ENCDO113AZK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3346145/'], '@type': ['Target', 'Item'], 'name': 'CG33557-dmelanogaster', 'label': 'CG33557', '@id': '/targets/CG33557-dmelanogaster/', 'title': 'CG33557 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4e5f29-0a5a-49c3-aecc-72a5771507dc', 'status': 'released'} dm3 X 9885105 9906218 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF080DAK/, /files/ENCFF479RCH/ 1407574685 Kevin White, UChicago 5741047733e2a1086f0e4aa7296ce342 https://www.encodeproject.org/files/ENCFF523KDJ/@@download/ENCFF523KDJ.bam released s3://encode-public/2019/04/13/75c7150f-6964-411b-ad5f-b16216bc3f9a/ENCFF523KDJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF885YVJ bigWig bigWig read-depth normalized signal dm6 ENCSR774SAN Control ChIP-seq /fly-donors/ENCDO113AZK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3346145/'], '@type': ['Target', 'Item'], 'name': 'CG33557-dmelanogaster', 'label': 'CG33557', '@id': '/targets/CG33557-dmelanogaster/', 'title': 'CG33557 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4e5f29-0a5a-49c3-aecc-72a5771507dc', 'status': 'released'} dm3 X 9885105 9906218 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF523KDJ/ 17807694 Kevin White, UChicago 827cc74d58615560b09045ce237b4e4d https://www.encodeproject.org/files/ENCFF885YVJ/@@download/ENCFF885YVJ.bigWig released s3://encode-public/2019/04/16/e7b2de4c-edbd-4ab9-8cb7-6796c15f514e/ENCFF885YVJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF863ZBP bigWig bigWig signal of unique reads dm6 ENCSR774SAN Control ChIP-seq /fly-donors/ENCDO113AZK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/3346145/'], '@type': ['Target', 'Item'], 'name': 'CG33557-dmelanogaster', 'label': 'CG33557', '@id': '/targets/CG33557-dmelanogaster/', 'title': 'CG33557 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ca4e5f29-0a5a-49c3-aecc-72a5771507dc', 'status': 'released'} dm3 X 9885105 9906218 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF523KDJ/ 17795869 Kevin White, UChicago ae2716d27dffe9d8b9783aeee4d1b93f https://www.encodeproject.org/files/ENCFF863ZBP/@@download/ENCFF863ZBP.bigWig released s3://encode-public/2019/04/16/1f291d21-5f1b-4dfb-8b2f-8c8ae8e8522b/ENCFF863ZBP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF378VIK bam bam alignments dm3 ENCSR450VEA Control ChIP-seq /fly-donors/ENCDO860ZGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 175-225 1 1_1 49 /files/ENCFF333DRG/, /files/ENCFF059UHX/ 1940866172 Kevin White, UChicago cb61f8823a1fe71c403ee84ec879e3ce https://www.encodeproject.org/files/ENCFF378VIK/@@download/ENCFF378VIK.bam released s3://encode-public/2015/08/03/8e44f910-29e0-4996-930b-dd7a2553b95d/ENCFF378VIK.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF663TMF bigWig bigWig read-depth normalized signal dm3 ENCSR450VEA Control ChIP-seq /fly-donors/ENCDO860ZGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 175-225 1 1_1 /files/ENCFF378VIK/ 15425640 Kevin White, UChicago 2ff5d671e8125213e736dc0650f5d073 https://www.encodeproject.org/files/ENCFF663TMF/@@download/ENCFF663TMF.bigWig released s3://encode-public/2015/10/06/ddc0c025-dfae-432d-a922-eea2c9cce37c/ENCFF663TMF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF736KPH bigWig bigWig signal of unique reads dm3 ENCSR450VEA Control ChIP-seq /fly-donors/ENCDO860ZGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 175-225 1 1_1 /files/ENCFF378VIK/ 15433892 Kevin White, UChicago c8d34c7f0ff2c4715ac6061585dadc2a https://www.encodeproject.org/files/ENCFF736KPH/@@download/ENCFF736KPH.bigWig released s3://encode-public/2015/10/06/fa078507-175b-4a8d-b898-b21776056f51/ENCFF736KPH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF376XMC bam bam alignments dm6 ENCSR450VEA Control ChIP-seq /fly-donors/ENCDO860ZGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 175-225 1 1_1 49 /files/ENCFF333DRG/, /files/ENCFF479RCH/ 1934797586 Kevin White, UChicago 7b836c00131441b6114f4be2e3316ab2 https://www.encodeproject.org/files/ENCFF376XMC/@@download/ENCFF376XMC.bam released s3://encode-public/2016/04/21/b7e6f1de-45a8-488d-9234-061c162e041a/ENCFF376XMC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF337KQV bigWig bigWig read-depth normalized signal dm6 ENCSR450VEA Control ChIP-seq /fly-donors/ENCDO860ZGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 175-225 1 1_1 /files/ENCFF376XMC/ 17510434 Kevin White, UChicago 6d05b86e02c9998095ea301d7a1b98bd https://www.encodeproject.org/files/ENCFF337KQV/@@download/ENCFF337KQV.bigWig released s3://encode-public/2016/06/21/b656427e-2f93-444d-9c7c-aa3be4221ce0/ENCFF337KQV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF616BRK bigWig bigWig signal of unique reads dm6 ENCSR450VEA Control ChIP-seq /fly-donors/ENCDO860ZGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 175-225 1 1_1 /files/ENCFF376XMC/ 17511752 Kevin White, UChicago e7b44507b5f5f927f760d475e49d4168 https://www.encodeproject.org/files/ENCFF616BRK/@@download/ENCFF616BRK.bigWig released s3://encode-public/2016/06/21/4afc1310-d622-4979-9143-f5737c39c1c4/ENCFF616BRK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF333DRG fastq fastq reads ENCSR450VEA Control ChIP-seq /fly-donors/ENCDO860ZGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 175-225 1 1_1 50 single-ended 1424629616 Kevin White, UChicago 1fd3b47512a822dd30a08f94ea0666d6 https://www.encodeproject.org/files/ENCFF333DRG/@@download/ENCFF333DRG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/fdb52707-378c-46cd-b358-deefc2ca4391/ENCFF333DRG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF698GOD fastq fastq reads ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF051ZTX/ 2864543668 Richard Myers, HAIB 580338c3ad7b966ec3b012d41d7459e6 SRA:SRR8660049 https://www.encodeproject.org/files/ENCFF698GOD/@@download/ENCFF698GOD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/e697d5b1-ffb4-4f26-9c91-2b8e029d40a7/ENCFF698GOD.fastq.gz ENCFF051ZTX fastq fastq reads ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF698GOD/ 3013662790 Richard Myers, HAIB 7619b767fe955f063934991e358741aa SRA:SRR8660049 https://www.encodeproject.org/files/ENCFF051ZTX/@@download/ENCFF051ZTX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/7fbe3e5b-9c50-4cd5-95d1-13b1742e1d62/ENCFF051ZTX.fastq.gz ENCFF339SFQ bam bam alignments hg19 ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF698GOD/, /files/ENCFF051ZTX/ 4709226531 ENCODE Processing Pipeline 55d009f1983f62393f3a09237d4d64bc https://www.encodeproject.org/files/ENCFF339SFQ/@@download/ENCFF339SFQ.bam released s3://encode-public/2017/02/02/29c79d7c-37cf-4264-87be-8c6adf8e40a3/ENCFF339SFQ.bam ENCODE3 hg19 archived ENCFF681ZMA bam bam unfiltered alignments hg19 ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF698GOD/, /files/ENCFF051ZTX/ 6961664654 ENCODE Processing Pipeline 4df65863b7c95bab2438f2bd38d0bfab https://www.encodeproject.org/files/ENCFF681ZMA/@@download/ENCFF681ZMA.bam released s3://encode-public/2017/02/02/31b17c17-0bc6-405f-b5e4-45c4ec1e410c/ENCFF681ZMA.bam ENCODE3 hg19 archived ENCFF505FXU bam bam unfiltered alignments GRCh38 ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF698GOD/, /files/ENCFF051ZTX/, /files/ENCFF643CGH/ 6993083310 ENCODE Processing Pipeline dcbe83e5d75e1660b411c90adad2b21e https://www.encodeproject.org/files/ENCFF505FXU/@@download/ENCFF505FXU.bam released s3://encode-public/2017/02/02/80591e50-1f87-46d4-a503-a51e84689ee6/ENCFF505FXU.bam ENCODE3 GRCh38 archived ENCFF485SVR bam bam alignments GRCh38 ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF698GOD/, /files/ENCFF051ZTX/, /files/ENCFF643CGH/ 4717333021 ENCODE Processing Pipeline 867ce874453268e60b04d347a4c39781 https://www.encodeproject.org/files/ENCFF485SVR/@@download/ENCFF485SVR.bam released s3://encode-public/2017/02/02/86dd54e6-4c99-4384-a1ff-49d1cb944759/ENCFF485SVR.bam ENCODE3 GRCh38 archived ENCFF534EII bam bam unfiltered alignments GRCh38 ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF698GOD/, /files/ENCFF051ZTX/ 7094016101 ENCODE Processing Pipeline b1a015761a8cb9a35dd78d5c43d62fac https://www.encodeproject.org/files/ENCFF534EII/@@download/ENCFF534EII.bam released s3://encode-public/2020/06/06/91d513d6-e09f-4ba4-b0b4-0dd601e2e7ab/ENCFF534EII.bam ENCODE4 v1.4.0 GRCh38 released ENCFF272VWH bam bam alignments GRCh38 ENCSR621IYT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF698GOD/, /files/ENCFF051ZTX/ 4489945646 ENCODE Processing Pipeline 20ea7798f9ec1640b686df8f3efd90b6 https://www.encodeproject.org/files/ENCFF272VWH/@@download/ENCFF272VWH.bam released s3://encode-public/2020/06/06/61fd211f-7626-4329-b933-06cc0f9589cd/ENCFF272VWH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF011TZG fastq fastq reads ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF539NMO/ 3233613600 Michael Snyder, Stanford d25e1e2f2ad63f24552b006142b45167 SRA:SRR6214078 https://www.encodeproject.org/files/ENCFF011TZG/@@download/ENCFF011TZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/06/6f0fdcfb-ca98-4c5d-a4fe-082dbca87dc9/ENCFF011TZG.fastq.gz mild to moderate bottlenecking ENCFF539NMO fastq fastq reads ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF011TZG/ 3783512090 Michael Snyder, Stanford 57bc363271e2687f2c355e7a09c1f06b SRA:SRR6214078 https://www.encodeproject.org/files/ENCFF539NMO/@@download/ENCFF539NMO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/06/8c10ba6b-5d93-4395-8811-4a209dce3d99/ENCFF539NMO.fastq.gz mild to moderate bottlenecking ENCFF792UBJ bam bam unfiltered alignments hg19 ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF539NMO/, /files/ENCFF807MUK/, /files/ENCFF011TZG/ 6688357553 ENCODE Processing Pipeline 9509d186a10aeef60b5d612bc2661806 https://www.encodeproject.org/files/ENCFF792UBJ/@@download/ENCFF792UBJ.bam released s3://encode-public/2017/03/17/d926994e-2319-440d-a3b2-c2f54b1705bb/ENCFF792UBJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF982MHW bam bam unfiltered alignments GRCh38 ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF539NMO/, /files/ENCFF011TZG/, /files/ENCFF643CGH/ 6700069175 ENCODE Processing Pipeline be37f64d31164f6df11a36e3652cfbec https://www.encodeproject.org/files/ENCFF982MHW/@@download/ENCFF982MHW.bam released s3://encode-public/2017/03/17/a15b192f-2769-4cf4-b43f-69336b3c25ee/ENCFF982MHW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF015PXS bam bam alignments GRCh38 ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF539NMO/, /files/ENCFF011TZG/, /files/ENCFF643CGH/ 5173579546 ENCODE Processing Pipeline b8551fe23ec0a8de83c30a0157c7f1fd https://www.encodeproject.org/files/ENCFF015PXS/@@download/ENCFF015PXS.bam released s3://encode-public/2017/03/17/eb05aefe-bf18-4763-8042-52ecce0709a1/ENCFF015PXS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF580MDV bam bam alignments hg19 ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF539NMO/, /files/ENCFF807MUK/, /files/ENCFF011TZG/ 5164438944 ENCODE Processing Pipeline 2e82f99393c296acf8e8f96e79ad4a31 https://www.encodeproject.org/files/ENCFF580MDV/@@download/ENCFF580MDV.bam released s3://encode-public/2017/03/17/014659c6-3180-4f77-a556-62183462db67/ENCFF580MDV.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF621UFE bam bam unfiltered alignments GRCh38 ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF011TZG/, /files/ENCFF539NMO/ 6702344341 ENCODE Processing Pipeline 8b893881a1141c8749cce38535a28b45 https://www.encodeproject.org/files/ENCFF621UFE/@@download/ENCFF621UFE.bam released s3://encode-public/2020/06/02/de6d601d-f10c-44f6-bb77-0cc35bfcd7c3/ENCFF621UFE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF170CDW bam bam alignments GRCh38 ENCSR834ESZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF011TZG/, /files/ENCFF539NMO/ 5076447820 ENCODE Processing Pipeline f3693c32f21df0782de682a3be34c52e https://www.encodeproject.org/files/ENCFF170CDW/@@download/ENCFF170CDW.bam released s3://encode-public/2020/06/02/d7e60317-e4bb-48a5-9499-2e22d61feafa/ENCFF170CDW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF002AXD fastq fastq reads ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 37 single-ended 1652273584 Bradley Bernstein, Broad ab11299041919a02c25f570637760812 SRA:SRR4235641 https://www.encodeproject.org/files/ENCFF002AXD/@@download/ENCFF002AXD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/03/19/392c818a-ea89-4dd0-8e24-62f7d871b5f2/ENCFF002AXD.fastq.gz low read length, mixed read lengths ENCFF568KIR bam bam unfiltered alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002AXD/ 2129801332 ENCODE Processing Pipeline 4c1001a7ffa887b1a21f9232d5febea8 https://www.encodeproject.org/files/ENCFF568KIR/@@download/ENCFF568KIR.bam released s3://encode-public/2020/09/17/59562e6f-904f-4c11-a560-71a3e1ec45db/ENCFF568KIR.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF699FIQ fastq fastq reads ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 single-ended 1453186240 Bradley Bernstein, Broad b1a5642a54e884649646fdaf26bb2385 SRA:SRR4235640 https://www.encodeproject.org/files/ENCFF699FIQ/@@download/ENCFF699FIQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/24/c1d6eb47-3897-4889-a7c9-f503c862ed81/ENCFF699FIQ.fastq.gz low read length, mixed read lengths ENCFF406HBU bam bam unfiltered alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 37 /files/ENCFF643CGH/, /files/ENCFF002AXD/ 2294128335 ENCODE Processing Pipeline eda04403d2204905da4f194399a97691 https://www.encodeproject.org/files/ENCFF406HBU/@@download/ENCFF406HBU.bam released s3://encode-public/2016/05/06/463c575f-ef18-4c1d-adbb-2c3c5e63dbda/ENCFF406HBU.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF056BZA bam bam alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 37 /files/ENCFF643CGH/, /files/ENCFF002AXD/ 1620610799 ENCODE Processing Pipeline b1bb8a183dc2fac10889cb41eda8d2e6 https://www.encodeproject.org/files/ENCFF056BZA/@@download/ENCFF056BZA.bam released s3://encode-public/2016/05/06/c31c9d7f-8fd5-4c28-9c62-89dde00a63ce/ENCFF056BZA.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF595IMS fastq fastq reads ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 76 single-ended 315177281 Bradley Bernstein, Broad cccc0e244f9c03471530c1a6249a9b7c https://www.encodeproject.org/files/ENCFF595IMS/@@download/ENCFF595IMS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/05/0202ddad-a6c9-4372-9859-7c7c9e53fcab/ENCFF595IMS.fastq.gz low read length, mixed read lengths ENCFF353BJM fastq fastq reads ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 76 single-ended 300340807 Bradley Bernstein, Broad 8c598e885440d5ae8d2523ddaae3c623 https://www.encodeproject.org/files/ENCFF353BJM/@@download/ENCFF353BJM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/05/90cd1c21-9a5b-48b9-8d08-11d4748d5410/ENCFF353BJM.fastq.gz low read length, mixed read lengths ENCFF285YQW bam bam unfiltered alignments hg19 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 37 /files/ENCFF807MUK/, /files/ENCFF002AXD/ 2280141585 ENCODE Processing Pipeline b75cba0a27c49c0c3006a32efe173477 https://www.encodeproject.org/files/ENCFF285YQW/@@download/ENCFF285YQW.bam released s3://encode-public/2016/10/09/46fc4740-13ad-41d3-954e-6e6e26c16984/ENCFF285YQW.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF246XTY bam bam alignments hg19 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 37 /files/ENCFF807MUK/, /files/ENCFF002AXD/ 1620657086 ENCODE Processing Pipeline 5d3bb2ba0c18b7de0dbb9a3e12aa0386 https://www.encodeproject.org/files/ENCFF246XTY/@@download/ENCFF246XTY.bam released s3://encode-public/2016/10/09/40b1be95-527e-4a3b-8361-4a5de2d0a76c/ENCFF246XTY.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF821FQR bam bam alignments hg19 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF595IMS/, /files/ENCFF699FIQ/, /files/ENCFF353BJM/ 1636347774 ENCODE Processing Pipeline 7963cf3cefe02c86cc20dfb6f86d87be https://www.encodeproject.org/files/ENCFF821FQR/@@download/ENCFF821FQR.bam released s3://encode-public/2016/10/14/39861fa3-a923-44ad-9608-4a0a08dc99ff/ENCFF821FQR.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF888YOD bam bam unfiltered alignments hg19 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF595IMS/, /files/ENCFF699FIQ/, /files/ENCFF353BJM/ 2419565222 ENCODE Processing Pipeline 305ce3c475f2c21990477d08c126b387 https://www.encodeproject.org/files/ENCFF888YOD/@@download/ENCFF888YOD.bam released s3://encode-public/2016/10/14/41e887da-bf09-4e6c-991a-7b1f458f84fe/ENCFF888YOD.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF966DNY bam bam unfiltered alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF595IMS/, /files/ENCFF699FIQ/, /files/ENCFF353BJM/ 2437355130 ENCODE Processing Pipeline 45ee2fdd07641b6d3f21cf2adba1dbe6 https://www.encodeproject.org/files/ENCFF966DNY/@@download/ENCFF966DNY.bam released s3://encode-public/2016/10/14/4b1afbe4-0c6f-4118-bf54-cad6ad9da25b/ENCFF966DNY.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF876PYV bam bam alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF595IMS/, /files/ENCFF699FIQ/, /files/ENCFF353BJM/ 1636239610 ENCODE Processing Pipeline 24caca92c0d320eaa6ef48e72e746d6c https://www.encodeproject.org/files/ENCFF876PYV/@@download/ENCFF876PYV.bam released s3://encode-public/2016/10/14/8188a3e5-7e27-424c-bdea-6b74deb29f21/ENCFF876PYV.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF173BJU bam bam unfiltered alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF353BJM/, /files/ENCFF110MCL/, /files/ENCFF699FIQ/, /files/ENCFF595IMS/ 2375977260 ENCODE Processing Pipeline 18f6804cf126751e3744828eac85d3cc https://www.encodeproject.org/files/ENCFF173BJU/@@download/ENCFF173BJU.bam released s3://encode-public/2020/09/17/b82e92ff-b6ca-4e98-9795-91ea22e897b0/ENCFF173BJU.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF359MJV bam bam alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF353BJM/, /files/ENCFF110MCL/, /files/ENCFF699FIQ/, /files/ENCFF595IMS/ 1783306630 ENCODE Processing Pipeline c76977b45f4aac7656f6586c34ec2d0e https://www.encodeproject.org/files/ENCFF359MJV/@@download/ENCFF359MJV.bam released s3://encode-public/2020/09/17/63439ecf-1ccd-4f38-99c9-992306939022/ENCFF359MJV.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF339RHR bam bam alignments GRCh38 ENCSR367UDO Control ChIP-seq /human-donors/ENCDO354AAA/ EFO:0005719 Karpas-422 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002AXD/ 1653671459 ENCODE Processing Pipeline b19c089ef7a79d72228aef00b074c033 https://www.encodeproject.org/files/ENCFF339RHR/@@download/ENCFF339RHR.bam released s3://encode-public/2020/09/17/85a643b0-e4b6-49fc-af63-58db8f17a67d/ENCFF339RHR.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF002AVH fastq fastq reads ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 single-ended 1029695297 Bradley Bernstein, Broad f21e585f66ff12e983fcca888a698901 SRA:SRR4235588 https://www.encodeproject.org/files/ENCFF002AVH/@@download/ENCFF002AVH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/19/d79f2698-683d-455c-bc66-ff5f18ff3f1a/ENCFF002AVH.fastq.gz low read length, mixed read lengths ENCFF611RGI bam bam unfiltered alignments GRCh38 ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF002AVH/, /files/ENCFF651VMP/, /files/ENCFF244WIG/, /files/ENCFF110MCL/ 3578959053 ENCODE Processing Pipeline 43e11b5ce7a29183090c51961b119b8a https://www.encodeproject.org/files/ENCFF611RGI/@@download/ENCFF611RGI.bam released s3://encode-public/2020/09/17/90cea5f1-5830-44d8-bd68-d03056e4378c/ENCFF611RGI.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF520QFS bam bam alignments GRCh38 ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF002AVH/, /files/ENCFF651VMP/, /files/ENCFF244WIG/, /files/ENCFF110MCL/ 2714174995 ENCODE Processing Pipeline 950b31e70da70d3eead8049b3a9711f9 https://www.encodeproject.org/files/ENCFF520QFS/@@download/ENCFF520QFS.bam released s3://encode-public/2020/09/17/83d6a7f0-890a-444e-ac53-7aeb7b1c1704/ENCFF520QFS.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF686LMO bam bam alignments GRCh38 ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF812ISD/, /files/ENCFF982FDH/, /files/ENCFF110MCL/, /files/ENCFF355DMM/, /files/ENCFF935ETD/ 1812772412 ENCODE Processing Pipeline 3144e60efeb9f6e702e91473c10b58cc https://www.encodeproject.org/files/ENCFF686LMO/@@download/ENCFF686LMO.bam released s3://encode-public/2020/09/17/703bfcac-ccae-416f-b4cc-42bec7825711/ENCFF686LMO.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF935ETD fastq fastq reads ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 37 single-ended 800220827 Bradley Bernstein, Broad c27947a43940313fe15ce5e41f722a3b SRA:SRR4235586 https://www.encodeproject.org/files/ENCFF935ETD/@@download/ENCFF935ETD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/11/f29fe883-568a-4a90-a0ab-a029064a2c5a/ENCFF935ETD.fastq.gz low read length, mixed read lengths ENCFF812ISD fastq fastq reads ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 single-ended 519480829 Bradley Bernstein, Broad ff6ec7f864261a661ae3dc37d3579958 SRA:SRR4235587 https://www.encodeproject.org/files/ENCFF812ISD/@@download/ENCFF812ISD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/11/188de048-c150-424f-9d47-60dcb8f0e014/ENCFF812ISD.fastq.gz low read length, mixed read lengths ENCFF651VMP fastq fastq reads ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 76 single-ended 1784528195 Bradley Bernstein, Broad cee16c17ef8c4699839f8c9363435aeb SRA:SRR5471116 https://www.encodeproject.org/files/ENCFF651VMP/@@download/ENCFF651VMP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/08/58f20689-e650-4c13-8b62-e281312e8f79/ENCFF651VMP.fastq.gz low read length, mixed read lengths ENCFF355DMM fastq fastq reads ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 76 single-ended 386723909 Bradley Bernstein, Broad d73f6cbf80be541dafc155089bd7de84 SRA:SRR5471114 https://www.encodeproject.org/files/ENCFF355DMM/@@download/ENCFF355DMM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/08/2c90738a-3933-4894-930c-9cbf8292ce12/ENCFF355DMM.fastq.gz low read length, mixed read lengths ENCFF982FDH fastq fastq reads ENCSR179YLS Control ChIP-seq /human-donors/ENCDO353AAA/ EFO:0002357 SU-DHL-6 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 76 single-ended 369460290 Bradley Bernstein, Broad b9904190163efbe62baccdec088db991 SRA:SRR5471115 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/files/ENCFF002AQK/, /files/ENCFF018NEO/ 929637287 ENCODE Processing Pipeline 5df8baf050aef4dc04d294721f2cf4bb https://www.encodeproject.org/files/ENCFF568CQH/@@download/ENCFF568CQH.bam released s3://encode-public/2016/10/03/14895cd0-cfdc-49b1-9eb7-f905cc170f11/ENCFF568CQH.bam ENCODE3 mm10 archived low read length ENCFF703JFF bam bam unfiltered alignments mm10 ENCSR413VHH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQK/, /files/ENCFF309GLL/ 1403389261 ENCODE Processing Pipeline b2b5f3688baa295e93072082c4c301ae https://www.encodeproject.org/files/ENCFF703JFF/@@download/ENCFF703JFF.bam released s3://encode-public/2020/10/08/e20f48d7-57fc-44be-b55c-d1323721d87a/ENCFF703JFF.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF405OOE bam bam alignments mm10 ENCSR413VHH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 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/mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQM/ 1065647045 ENCODE Processing Pipeline 43c83d1b2da0a543d5774498cf20791c https://www.encodeproject.org/files/ENCFF621VNI/@@download/ENCFF621VNI.bam released s3://encode-public/2020/10/08/af1b5ee6-849a-4d91-8fdf-1ba9154acf9c/ENCFF621VNI.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF000NPH bam bam alignments hg19 ENCSR000BVR Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000NPW/ 2009946189 Richard Myers, HAIB b00fb2b1ce22f55db3534c32b09ced5f https://www.encodeproject.org/files/ENCFF000NPH/@@download/ENCFF000NPH.bam archived s3://encode-public/2012/01/23/238eb6a2-f62c-412a-8036-32d5d122fb06/ENCFF000NPH.bam Lab custom hg19 archived low read depth ENCFF000NPI bam bam alignments hg19 ENCSR000BVR Control ChIP-seq 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ENCODE see document 2 2_1 50 /files/ENCFF000NQD/, /files/ENCFF110MCL/ 1705718991 ENCODE Processing Pipeline 487d6e5b8aa54cc03a15c20837b4eb7a https://www.encodeproject.org/files/ENCFF183UNA/@@download/ENCFF183UNA.bam released s3://encode-public/2020/10/27/d29d32cf-3021-4f51-bb0b-3bc11ee1b441/ENCFF183UNA.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF938JBJ bam bam alignments GRCh38 ENCSR000BVR Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000NPW/, /files/ENCFF110MCL/ 1713337504 ENCODE Processing Pipeline 48b48a2931bec3c528c8260303484609 https://www.encodeproject.org/files/ENCFF938JBJ/@@download/ENCFF938JBJ.bam released s3://encode-public/2020/10/27/c252b2b0-334b-499f-a9c5-199f2340fba5/ENCFF938JBJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF403CIU bam bam alignments GRCh38 ENCSR000BVR Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000NQD/, /files/ENCFF110MCL/ 1117348906 ENCODE Processing Pipeline 9dbcdbc6ccc3f42bdb9b6d7ab04b5400 https://www.encodeproject.org/files/ENCFF403CIU/@@download/ENCFF403CIU.bam released s3://encode-public/2020/10/27/50bb0bfa-b85c-40b7-9f1c-9a16d111f3cd/ENCFF403CIU.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF710RKN fastq fastq reads ENCSR641HBT Control ChIP-seq /fly-donors/ENCDO507HSC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 503055556 Kevin White, UChicago 212be387146c955ef79a5d2bb2020f3d https://www.encodeproject.org/files/ENCFF710RKN/@@download/ENCFF710RKN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/303d8d9d-8d11-4b8f-905b-30f1a8e4ab0c/ENCFF710RKN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF021HGV bam bam alignments dm3 ENCSR641HBT Control ChIP-seq /fly-donors/ENCDO507HSC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF710RKN/ 737166379 Kevin White, UChicago 484ee5f4fe9182f1e12a9ff8831d9602 https://www.encodeproject.org/files/ENCFF021HGV/@@download/ENCFF021HGV.bam released s3://encode-public/2015/08/03/95538310-0174-4ecd-bdb7-9f9fd5212c8b/ENCFF021HGV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF572MEC bigWig bigWig signal of unique reads dm3 ENCSR641HBT Control ChIP-seq /fly-donors/ENCDO507HSC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF021HGV/ 15187103 Kevin White, UChicago 3f9482b44678984b452ce2f514104339 https://www.encodeproject.org/files/ENCFF572MEC/@@download/ENCFF572MEC.bigWig released s3://encode-public/2015/10/05/eb6b5d54-1953-4c09-b243-8756bb79ad98/ENCFF572MEC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF061UQP bigWig bigWig read-depth normalized signal dm3 ENCSR641HBT Control ChIP-seq /fly-donors/ENCDO507HSC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF021HGV/ 15202687 Kevin White, UChicago f84f7bba4e9b03b325b5e92d84159f80 https://www.encodeproject.org/files/ENCFF061UQP/@@download/ENCFF061UQP.bigWig released s3://encode-public/2015/10/05/33beb4d2-41a4-4d0a-af9a-fab07e8d220f/ENCFF061UQP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF109ODN bam bam alignments dm6 ENCSR641HBT Control ChIP-seq /fly-donors/ENCDO507HSC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF710RKN/ 733815899 Kevin White, UChicago 13974464a032871871d7bdacadec8fda https://www.encodeproject.org/files/ENCFF109ODN/@@download/ENCFF109ODN.bam released s3://encode-public/2016/04/20/1a1fd2b1-7bcc-402b-8479-3983447ee5fd/ENCFF109ODN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF783OUJ bigWig bigWig read-depth normalized signal dm6 ENCSR641HBT Control ChIP-seq /fly-donors/ENCDO507HSC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF109ODN/ 17307025 Kevin White, UChicago a28ed5fb03ba5028598c29f233b4a462 https://www.encodeproject.org/files/ENCFF783OUJ/@@download/ENCFF783OUJ.bigWig released s3://encode-public/2016/06/21/ba4a429d-c4be-4c3c-85cb-a3507acb8719/ENCFF783OUJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF771VPI bigWig bigWig signal of unique reads dm6 ENCSR641HBT Control ChIP-seq /fly-donors/ENCDO507HSC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF109ODN/ 17286251 Kevin White, UChicago 161ae310b7a416705a263fcf49062d52 https://www.encodeproject.org/files/ENCFF771VPI/@@download/ENCFF771VPI.bigWig released s3://encode-public/2016/06/21/2e861a98-d765-459f-8465-e0c701c00c3a/ENCFF771VPI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002ABM fastq fastq reads ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_2 36 single-ended 945587586 Peggy Farnham, USC 772aa5ecb09c4d851c87caee2bc30afc SRA:SRR4235562 https://www.encodeproject.org/files/ENCFF002ABM/@@download/ENCFF002ABM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/03/13/d846d610-d531-44cf-9d3d-afa35ff82a6c/ENCFF002ABM.fastq.gz low read length ENCFF002ABO fastq fastq reads ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1 36 single-ended 817930595 Peggy Farnham, USC a46d471770edd5c3c876add0ad8db0d0 SRA:SRR4235563 https://www.encodeproject.org/files/ENCFF002ABO/@@download/ENCFF002ABO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/03/13/bd7edd11-bdb7-445b-9993-8c0701e528a1/ENCFF002ABO.fastq.gz low read length ENCFF070HBM bam bam unfiltered alignments GRCh38 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF002ABO/, /files/ENCFF002ABM/ 2527585126 ENCODE Processing Pipeline b1e82318f3f7dd672643a5d909d517dc https://www.encodeproject.org/files/ENCFF070HBM/@@download/ENCFF070HBM.bam released s3://encode-public/2016/07/13/cba97c92-b29e-4cad-a640-3fc596771ce7/ENCFF070HBM.bam ENCODE3 GRCh38 archived low read length ENCFF449CRS bam bam alignments GRCh38 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF002ABO/, /files/ENCFF002ABM/ 1058790956 ENCODE Processing Pipeline fa03292f52d0cdd88dcee5f59463b6fc https://www.encodeproject.org/files/ENCFF449CRS/@@download/ENCFF449CRS.bam released s3://encode-public/2016/07/13/4045ce6b-b294-4136-bf9c-c94936417f1d/ENCFF449CRS.bam ENCODE3 GRCh38 archived low read length ENCFF842KQD bam bam unfiltered alignments hg19 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF002ABO/, /files/ENCFF002ABM/ 2469313719 ENCODE Processing Pipeline ffc9cfc23f91465d1bce6a3ae9a18d23 https://www.encodeproject.org/files/ENCFF842KQD/@@download/ENCFF842KQD.bam released s3://encode-public/2016/09/06/e5ea7c89-86fd-4de7-bbd8-eae3365fa92e/ENCFF842KQD.bam ENCODE3 hg19 archived low read length ENCFF650GFB bam bam alignments hg19 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF002ABO/, /files/ENCFF002ABM/ 1054844565 ENCODE Processing Pipeline 5be3658e92d263691f54c64333fdb5ec https://www.encodeproject.org/files/ENCFF650GFB/@@download/ENCFF650GFB.bam released s3://encode-public/2016/09/06/e0f95c57-407c-4d19-a05d-b1c8ffaa4db1/ENCFF650GFB.bam ENCODE3 hg19 archived low read length ENCFF901DAI bam bam unfiltered alignments GRCh38 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF002ABO/, /files/ENCFF002ABM/ 2527585163 ENCODE Processing Pipeline 85547fc849dff321ef2e1be47cb55426 https://www.encodeproject.org/files/ENCFF901DAI/@@download/ENCFF901DAI.bam released s3://encode-public/2020/02/18/54b49e1a-4666-4f04-8026-2a18c5b536b3/ENCFF901DAI.bam low read length ENCFF307YOF bam bam alignments GRCh38 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF002ABO/, /files/ENCFF002ABM/ 1058790992 ENCODE Processing Pipeline 79df881b7508193ed4a586a938baad4d https://www.encodeproject.org/files/ENCFF307YOF/@@download/ENCFF307YOF.bam released s3://encode-public/2020/02/18/27f6ee8b-daf3-4ee0-8e54-49a3458580f9/ENCFF307YOF.bam low read length ENCFF668RVF bam bam unfiltered alignments GRCh38 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF002ABO/, /files/ENCFF002ABM/, /files/ENCFF110MCL/ 2388005124 ENCODE Processing Pipeline 4bae4c6db9afe09ccdc8dde9433389e5 https://www.encodeproject.org/files/ENCFF668RVF/@@download/ENCFF668RVF.bam released s3://encode-public/2020/09/03/d30563bb-ac9f-4589-8cc1-e26be09c8ea1/ENCFF668RVF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF191PNI bam bam alignments GRCh38 ENCSR000FDA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (Bioruptor generic) 200-500 1 1_1, 1_2 36 /files/ENCFF002ABO/, /files/ENCFF002ABM/, /files/ENCFF110MCL/ 1308849907 ENCODE Processing Pipeline a6da22945934f9d70707b96c8d118c1e https://www.encodeproject.org/files/ENCFF191PNI/@@download/ENCFF191PNI.bam released s3://encode-public/2020/09/03/bc4cba7a-607e-4120-9443-ccd12f1821cd/ENCFF191PNI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF002AQF fastq fastq reads ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1804863970 Bing Ren, UCSD 30203212145a116ba1f74fbc086c59eb SRA:SRR3651620 https://www.encodeproject.org/files/ENCFF002AQF/@@download/ENCFF002AQF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/83a18bb8-9aff-4fa2-97a5-6739b324d28b/ENCFF002AQF.fastq.gz ENCFF002AQG fastq fastq reads ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1891889993 Bing Ren, UCSD 85a575be005fa6ae89c626c5967b347f SRA:SRR3651619 https://www.encodeproject.org/files/ENCFF002AQG/@@download/ENCFF002AQG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/8b4a4222-39f7-4016-86d8-97844e54169f/ENCFF002AQG.fastq.gz ENCFF100ZLH bam bam unfiltered alignments mm10-minimal ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQG/ 2162765185 ENCODE Processing Pipeline 9f24d21f4cf7f3ac3ddae9de7aff8012 https://www.encodeproject.org/files/ENCFF100ZLH/@@download/ENCFF100ZLH.bam archived s3://encode-public/2015/02/09/0e1f2ac7-b4bb-43ef-a118-3097b20cc23e/ENCFF100ZLH.bam ENCFF321OLM bam bam unfiltered alignments mm10-minimal ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQF/ 2067412909 ENCODE Processing Pipeline 958a6ccc7be95549ecc742b1349c3851 https://www.encodeproject.org/files/ENCFF321OLM/@@download/ENCFF321OLM.bam archived s3://encode-public/2015/02/09/4d5121d6-7d0a-4e79-86e9-af2b385387d4/ENCFF321OLM.bam ENCFF868CEP bam bam alignments mm10-minimal ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQF/ 1435482468 ENCODE Processing Pipeline 378f91f25b19b4d27e4659757070a2df https://www.encodeproject.org/files/ENCFF868CEP/@@download/ENCFF868CEP.bam archived s3://encode-public/2015/05/24/251d4461-9d73-4ded-9cec-1697c26dc33f/ENCFF868CEP.bam ENCFF462HQE bam bam alignments mm10-minimal ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQG/ 1495213347 ENCODE Processing Pipeline 23f7c5ff7170a562b3c63f14c48feced https://www.encodeproject.org/files/ENCFF462HQE/@@download/ENCFF462HQE.bam archived s3://encode-public/2015/05/24/f60a02eb-0ebb-48a2-8120-de5067a96c86/ENCFF462HQE.bam ENCFF193PZD bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQF/ 2069484802 ENCODE Processing Pipeline 68c3c94fb97e50d3b59f7a5456b938db https://www.encodeproject.org/files/ENCFF193PZD/@@download/ENCFF193PZD.bam released s3://encode-public/2016/05/20/933e63b2-ed33-46e9-a1ee-ddb9d4f81786/ENCFF193PZD.bam ENCODE3 mm10 archived ENCFF827DYZ bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQG/ 2165073587 ENCODE Processing Pipeline 00c58fc0f594e98706a28c73c5266b10 https://www.encodeproject.org/files/ENCFF827DYZ/@@download/ENCFF827DYZ.bam released s3://encode-public/2016/05/20/d3750282-3b16-4a39-ab89-081abe0d7580/ENCFF827DYZ.bam ENCODE3 mm10 archived ENCFF872AZH bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQF/ 1435051788 ENCODE Processing Pipeline 4e5cf336f46b42d56c9fb0ba4eb0d40c https://www.encodeproject.org/files/ENCFF872AZH/@@download/ENCFF872AZH.bam released s3://encode-public/2016/05/20/097e304c-febd-49d1-93ff-1f8791faa173/ENCFF872AZH.bam ENCODE3 mm10 archived ENCFF238DWC bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQG/ 1494757798 ENCODE Processing Pipeline 3fe3dd97092a1482a2622d707a1bf532 https://www.encodeproject.org/files/ENCFF238DWC/@@download/ENCFF238DWC.bam released s3://encode-public/2016/05/20/f6dab6d7-2002-469b-acd2-ae5ef830254e/ENCFF238DWC.bam ENCODE3 mm10 archived ENCFF895JNF bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQG/ 1754646477 ENCODE Processing Pipeline 71560c8368b15ec48c826d412d8072d0 https://www.encodeproject.org/files/ENCFF895JNF/@@download/ENCFF895JNF.bam released s3://encode-public/2016/10/03/c8217dd8-552b-4caf-97b8-0c9e375fdfc3/ENCFF895JNF.bam ENCODE3 mm10 archived ENCFF294LID bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQF/ 1677413702 ENCODE Processing Pipeline 887dc4e043c701b2d21bdfe21bf07666 https://www.encodeproject.org/files/ENCFF294LID/@@download/ENCFF294LID.bam released s3://encode-public/2016/10/03/e4cff62a-d951-4248-8304-977fcb1eb64f/ENCFF294LID.bam ENCODE3 mm10 archived ENCFF598OHC bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQG/ 1130170515 ENCODE Processing Pipeline dce90a9d0d0d552552e7420a5d331041 https://www.encodeproject.org/files/ENCFF598OHC/@@download/ENCFF598OHC.bam released s3://encode-public/2016/10/03/7b3d5281-1d83-4c84-b9f4-fbfb060e8e38/ENCFF598OHC.bam ENCODE3 mm10 archived ENCFF383CGK bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQF/ 1084466431 ENCODE Processing Pipeline b366ed9f50c590cf98aab51d57c3747d https://www.encodeproject.org/files/ENCFF383CGK/@@download/ENCFF383CGK.bam released s3://encode-public/2016/10/03/01c2a9ca-6de2-4933-8f7c-aa0b2a6a516e/ENCFF383CGK.bam ENCODE3 mm10 archived ENCFF148MST bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQG/, /files/ENCFF309GLL/ 1546736186 ENCODE Processing Pipeline 094ee5f65b14ecd97925d69a6c48e1d3 https://www.encodeproject.org/files/ENCFF148MST/@@download/ENCFF148MST.bam released s3://encode-public/2020/10/08/bb970203-1757-46f9-8958-0ca5d0ddb4c2/ENCFF148MST.bam ENCODE4 v1.5.1 mm10 released ENCFF935RLD bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQG/, /files/ENCFF309GLL/ 2125198382 ENCODE Processing Pipeline 2e38e10c7b7f9abc0cba88cf14d1f106 https://www.encodeproject.org/files/ENCFF935RLD/@@download/ENCFF935RLD.bam released s3://encode-public/2020/10/08/acdd6f10-cd4d-4824-b5d5-d2accb5e75da/ENCFF935RLD.bam ENCODE4 v1.5.1 mm10 released ENCFF157QTK bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQF/, /files/ENCFF309GLL/ 2031317763 ENCODE Processing Pipeline ca86c064a1244d59a923218b35d1e9bf https://www.encodeproject.org/files/ENCFF157QTK/@@download/ENCFF157QTK.bam released s3://encode-public/2020/10/08/997a2567-ebda-4fad-add6-99f4d53c3328/ENCFF157QTK.bam ENCODE4 v1.5.1 mm10 released ENCFF586ZPV bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQF/, /files/ENCFF309GLL/ 1483983469 ENCODE Processing Pipeline c23495f2b6927ab055133f574b3dda8b https://www.encodeproject.org/files/ENCFF586ZPV/@@download/ENCFF586ZPV.bam released s3://encode-public/2020/10/08/a45f7e4f-5ad9-4a8e-9ff7-078818a68225/ENCFF586ZPV.bam ENCODE4 v1.5.1 mm10 released ENCFF899DOQ bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQF/, /files/ENCFF309GLL/ 1634972808 ENCODE Processing Pipeline 063aa423b12a80cfbb909028fd7c04a8 https://www.encodeproject.org/files/ENCFF899DOQ/@@download/ENCFF899DOQ.bam released s3://encode-public/2020/10/10/85c775d4-54e2-4494-a9b8-81d9d3581c57/ENCFF899DOQ.bam ENCODE4 v1.5.1 mm10 released ENCFF753CTR bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQG/, /files/ENCFF309GLL/ 1217144105 ENCODE Processing Pipeline 86b351e2c161fcdf94cb234c471a4197 https://www.encodeproject.org/files/ENCFF753CTR/@@download/ENCFF753CTR.bam released s3://encode-public/2020/10/10/ed1446d9-d24a-45d4-858c-0a25dbf2907a/ENCFF753CTR.bam ENCODE4 v1.5.1 mm10 released ENCFF235PUV bam bam unfiltered alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQG/, /files/ENCFF309GLL/ 1710222339 ENCODE Processing Pipeline a5ea2eff96bbf9314a4701edd284131d https://www.encodeproject.org/files/ENCFF235PUV/@@download/ENCFF235PUV.bam released s3://encode-public/2020/10/10/292ee804-7479-49c6-815e-6b2cfdba0170/ENCFF235PUV.bam ENCODE4 v1.5.1 mm10 released ENCFF438HXD bam bam alignments mm10 ENCSR232EOO Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQF/, /files/ENCFF309GLL/ 1167512253 ENCODE Processing Pipeline 5e5951b1faf17803876fece08fda4ec2 https://www.encodeproject.org/files/ENCFF438HXD/@@download/ENCFF438HXD.bam released s3://encode-public/2020/10/10/dd5fa287-9005-43c9-b29d-7da4f4112c86/ENCFF438HXD.bam ENCODE4 v1.5.1 mm10 released ENCFF975LLO fastq fastq reads ENCSR206FGY Control ChIP-seq /worm-donors/ENCDO149KCD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172441/'], '@type': ['Target', 'Item'], 'name': 'F22D6.2-celegans', 'label': 'F22D6.2', '@id': '/targets/F22D6.2-celegans/', 'title': 'F22D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e87ae0e-d228-4a87-9753-b97294a79960', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 644705699 Kevin White, UChicago 1c0693324888a8ebe79f8078892c693e https://www.encodeproject.org/files/ENCFF975LLO/@@download/ENCFF975LLO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/0c165e05-26c2-4c45-b752-e71ebb5c11fa/ENCFF975LLO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF203HSW bam bam alignments ce10 ENCSR206FGY Control ChIP-seq /worm-donors/ENCDO149KCD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172441/'], '@type': ['Target', 'Item'], 'name': 'F22D6.2-celegans', 'label': 'F22D6.2', '@id': '/targets/F22D6.2-celegans/', 'title': 'F22D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e87ae0e-d228-4a87-9753-b97294a79960', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF975LLO/ 928393543 Kevin White, UChicago dc880f57afe79b3ab1b306b95461a433 https://www.encodeproject.org/files/ENCFF203HSW/@@download/ENCFF203HSW.bam released s3://encode-public/2015/08/07/315f705f-7548-4baa-a8c8-aad7754dc8b8/ENCFF203HSW.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF306IOT bigWig bigWig read-depth normalized signal ce10 ENCSR206FGY Control ChIP-seq /worm-donors/ENCDO149KCD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172441/'], '@type': ['Target', 'Item'], 'name': 'F22D6.2-celegans', 'label': 'F22D6.2', '@id': '/targets/F22D6.2-celegans/', 'title': 'F22D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e87ae0e-d228-4a87-9753-b97294a79960', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF203HSW/ 9973632 Kevin White, UChicago 3d2dbe68858abc0315127b456fc75ce4 https://www.encodeproject.org/files/ENCFF306IOT/@@download/ENCFF306IOT.bigWig released s3://encode-public/2015/10/02/048cf24f-2321-45b4-bab2-5e99d013bbcd/ENCFF306IOT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF480VYW bigWig bigWig signal of unique reads ce10 ENCSR206FGY Control ChIP-seq /worm-donors/ENCDO149KCD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172441/'], '@type': ['Target', 'Item'], 'name': 'F22D6.2-celegans', 'label': 'F22D6.2', '@id': '/targets/F22D6.2-celegans/', 'title': 'F22D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e87ae0e-d228-4a87-9753-b97294a79960', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF203HSW/ 9966166 Kevin White, UChicago 72e71cd515986d00d75a7b194530be6a https://www.encodeproject.org/files/ENCFF480VYW/@@download/ENCFF480VYW.bigWig released s3://encode-public/2015/10/02/b524d979-65f9-4d78-b3f2-4b4eb32b250c/ENCFF480VYW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF134WWR bam bam alignments ce11 ENCSR206FGY Control ChIP-seq /worm-donors/ENCDO149KCD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172441/'], '@type': ['Target', 'Item'], 'name': 'F22D6.2-celegans', 'label': 'F22D6.2', '@id': '/targets/F22D6.2-celegans/', 'title': 'F22D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e87ae0e-d228-4a87-9753-b97294a79960', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF975LLO/ 929192024 Kevin White, UChicago 554a67988ffc686f914edfb751ed083f https://www.encodeproject.org/files/ENCFF134WWR/@@download/ENCFF134WWR.bam released s3://encode-public/2016/01/16/258771bb-5d12-4372-a271-2dc71d777904/ENCFF134WWR.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF402MSI bigWig bigWig signal of unique reads ce11 ENCSR206FGY Control ChIP-seq /worm-donors/ENCDO149KCD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172441/'], '@type': ['Target', 'Item'], 'name': 'F22D6.2-celegans', 'label': 'F22D6.2', '@id': '/targets/F22D6.2-celegans/', 'title': 'F22D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e87ae0e-d228-4a87-9753-b97294a79960', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF134WWR/ 9959801 Kevin White, UChicago 66aac81cb61972e9d6137832859d5fd4 https://www.encodeproject.org/files/ENCFF402MSI/@@download/ENCFF402MSI.bigWig released s3://encode-public/2016/02/03/073c952a-9cc4-49e5-b545-4c976fb17d68/ENCFF402MSI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF577XQG bigWig bigWig read-depth normalized signal ce11 ENCSR206FGY Control ChIP-seq /worm-donors/ENCDO149KCD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172441/'], '@type': ['Target', 'Item'], 'name': 'F22D6.2-celegans', 'label': 'F22D6.2', '@id': '/targets/F22D6.2-celegans/', 'title': 'F22D6.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e87ae0e-d228-4a87-9753-b97294a79960', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF134WWR/ 9960553 Kevin White, UChicago ec2e11aff0b388563de67080d7c4f4f6 https://www.encodeproject.org/files/ENCFF577XQG/@@download/ENCFF577XQG.bigWig released s3://encode-public/2016/02/03/de03d4e4-4bbb-45d2-b468-f2336c9e31d8/ENCFF577XQG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF258BCY bam bam unfiltered alignments hg19 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF002AYR/, /files/ENCFF807MUK/ 1597359000 ENCODE Processing Pipeline b244b87780e4e316fff4b6a45e392d7e https://www.encodeproject.org/files/ENCFF258BCY/@@download/ENCFF258BCY.bam released s3://encode-public/2018/02/21/69b339f7-4e58-49da-897a-26fa6e4e8ff1/ENCFF258BCY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF519LMG bam bam unfiltered alignments hg19 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF002AXQ/, /files/ENCFF807MUK/ 1918001183 ENCODE Processing Pipeline 301ce82e135cd78ceb2fd20791c24c1b https://www.encodeproject.org/files/ENCFF519LMG/@@download/ENCFF519LMG.bam released s3://encode-public/2018/02/22/64f63a60-d9ff-4a85-a30b-1a177db625b9/ENCFF519LMG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF002AXQ fastq fastq reads ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 single-ended 1488409211 Bradley Bernstein, Broad 7471672358c1106db1d3e63888055102 SRA:SRR4235749 https://www.encodeproject.org/files/ENCFF002AXQ/@@download/ENCFF002AXQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/20/e3fe2a89-f1d2-4094-9f71-8f7dbefbf92d/ENCFF002AXQ.fastq.gz mild to moderate bottlenecking, low read length ENCFF002AYR fastq fastq reads ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 single-ended 1242863969 Bradley Bernstein, Broad b51158b5e33929db47184c82407ef21b SRA:SRR4235748 https://www.encodeproject.org/files/ENCFF002AYR/@@download/ENCFF002AYR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/20/b5187aa8-51d7-4173-b0eb-3196981063b9/ENCFF002AYR.fastq.gz mild to moderate bottlenecking, low read length ENCFF815IAY bam bam alignments hg19 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF002AXQ/, /files/ENCFF807MUK/ 1205331303 ENCODE Processing Pipeline 08abcae24e7ce52fe4e2e06c5b037b8b https://www.encodeproject.org/files/ENCFF815IAY/@@download/ENCFF815IAY.bam released s3://encode-public/2015/10/28/d1c4d1db-9d01-43e2-9bdd-23ad793d5234/ENCFF815IAY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF548ADC bam bam alignments hg19 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF002AYR/, /files/ENCFF807MUK/ 1102513050 ENCODE Processing Pipeline 0b7db2f06affad82d52448259a722186 https://www.encodeproject.org/files/ENCFF548ADC/@@download/ENCFF548ADC.bam released s3://encode-public/2015/10/28/b0d91cb0-2564-40d3-9206-37b1513a4bee/ENCFF548ADC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF902XIV bam bam unfiltered alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF002AYR/, /files/ENCFF643CGH/ 1606626529 ENCODE Processing Pipeline 887c00ace2d6d874ade39c2ff0da03bd https://www.encodeproject.org/files/ENCFF902XIV/@@download/ENCFF902XIV.bam released s3://encode-public/2016/05/06/25609c46-d920-4d3e-90d1-5011260cd150/ENCFF902XIV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF741EDI bam bam unfiltered alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF002AXQ/, /files/ENCFF643CGH/ 1927578237 ENCODE Processing Pipeline 3024b033551738e6f85767091bee16e3 https://www.encodeproject.org/files/ENCFF741EDI/@@download/ENCFF741EDI.bam released s3://encode-public/2016/05/06/f521b751-e7ec-47c8-8492-c984c698c428/ENCFF741EDI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF631ENA bam bam alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF002AYR/, /files/ENCFF643CGH/ 1102212486 ENCODE Processing Pipeline 02e2399d037e35a23164706bdc051b81 https://www.encodeproject.org/files/ENCFF631ENA/@@download/ENCFF631ENA.bam released s3://encode-public/2016/05/06/3b0c3182-61d8-4f26-bc45-223dc5b372b6/ENCFF631ENA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF838RMJ bam bam alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF002AXQ/, /files/ENCFF643CGH/ 1204859543 ENCODE Processing Pipeline 870b41e93deec5855b06bdf287863265 https://www.encodeproject.org/files/ENCFF838RMJ/@@download/ENCFF838RMJ.bam released s3://encode-public/2016/05/06/20b8e878-fe1d-42bb-aa69-f658489a1b07/ENCFF838RMJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF097LRY bam bam unfiltered alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF002AXQ/, /files/ENCFF110MCL/ 1872548043 ENCODE Processing Pipeline 6b215603410f5ccbce62b3d9437729b2 https://www.encodeproject.org/files/ENCFF097LRY/@@download/ENCFF097LRY.bam released s3://encode-public/2020/08/20/ab4f395c-a252-4717-aead-b6ac17741c09/ENCFF097LRY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF190FPA bam bam alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002AYR/ 1195742312 ENCODE Processing Pipeline 71e1d6ca0244c3f3e9257315a4195463 https://www.encodeproject.org/files/ENCFF190FPA/@@download/ENCFF190FPA.bam released s3://encode-public/2020/08/20/6f198fb7-3dfa-4038-84c9-92cb6c1ad70b/ENCFF190FPA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF707UTD bam bam unfiltered alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002AYR/ 1559919072 ENCODE Processing Pipeline 1d6a48da8f837d4baa1bfd74c5eb286f https://www.encodeproject.org/files/ENCFF707UTD/@@download/ENCFF707UTD.bam released s3://encode-public/2020/08/20/99e465c1-984d-4af4-9465-e1b25e3ddd6b/ENCFF707UTD.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF268BRJ bam bam alignments GRCh38 ENCSR742WWB Control ChIP-seq /human-donors/ENCDO352AAA/ EFO:0002167 DOHH2 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600 2 2_1 36 /files/ENCFF002AXQ/, /files/ENCFF110MCL/ 1302786174 ENCODE Processing Pipeline 79ea827ef452a300da77df64783906b1 https://www.encodeproject.org/files/ENCFF268BRJ/@@download/ENCFF268BRJ.bam released s3://encode-public/2020/08/20/8de02b21-366a-41c3-b579-de804f572751/ENCFF268BRJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF487CYO bam bam unfiltered alignments hg19 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECU/ 1891785701 ENCODE Processing Pipeline 90d3a95219e56da473d035839f36b3e9 https://www.encodeproject.org/files/ENCFF487CYO/@@download/ENCFF487CYO.bam released s3://encode-public/2018/02/21/af45b39a-91cf-4314-87b5-bc8f77fd913d/ENCFF487CYO.bam ENCODE3 hg19 archived low read length ENCFF250CMS bam bam unfiltered alignments hg19 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECQ/, /files/ENCFF807MUK/ 1910837952 ENCODE Processing Pipeline af7167cec86181d1a6729a397e9cbda7 https://www.encodeproject.org/files/ENCFF250CMS/@@download/ENCFF250CMS.bam released s3://encode-public/2018/02/21/6e6f4d66-3de7-43da-bd2a-aa6a35797d2a/ENCFF250CMS.bam ENCODE3 hg19 archived low read length ENCFF002ECQ fastq fastq reads ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 single-ended 1368967725 Michael Snyder, Stanford 3c0eced2d63a4a26ddcc5193929df3a3 SRA:SRR5111849 https://www.encodeproject.org/files/ENCFF002ECQ/@@download/ENCFF002ECQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/f2f99293-d970-4058-8916-4344bfefc5d3/ENCFF002ECQ.fastq.gz low read length ENCFF002ECU fastq fastq reads ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 single-ended 1388029357 Michael Snyder, Stanford 22734555daacc3e7b6807aea21f784b6 SRA:SRR5111848 https://www.encodeproject.org/files/ENCFF002ECU/@@download/ENCFF002ECU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/db3dbfbb-d16c-4197-9aad-d60dee74e0fb/ENCFF002ECU.fastq.gz low read length ENCFF817NEK bam bam alignments hg19 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECQ/, /files/ENCFF807MUK/ 1380910400 ENCODE Processing Pipeline 3318cb1a35ad4c24dab18c61e20293ff https://www.encodeproject.org/files/ENCFF817NEK/@@download/ENCFF817NEK.bam released s3://encode-public/2015/10/29/80827251-e702-4c52-83a7-927ba6c25289/ENCFF817NEK.bam ENCODE3 hg19 archived low read length ENCFF863VMN bam bam alignments hg19 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECU/ 1378151931 ENCODE Processing Pipeline f6f1eaa32bd8c5be326e40196d6cb751 https://www.encodeproject.org/files/ENCFF863VMN/@@download/ENCFF863VMN.bam released s3://encode-public/2015/10/29/b70aa5d4-ccb1-43e9-9f64-bbdda06fc12f/ENCFF863VMN.bam ENCODE3 hg19 archived low read length ENCFF834HAL bam bam unfiltered alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECU/ 1902709063 ENCODE Processing Pipeline c19e197f676b82187299bdba0af05967 https://www.encodeproject.org/files/ENCFF834HAL/@@download/ENCFF834HAL.bam released s3://encode-public/2016/05/06/74e63fc3-5036-422e-9739-4c5605bf0c61/ENCFF834HAL.bam ENCODE3 GRCh38 archived low read length ENCFF976RPU bam bam unfiltered alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECQ/, /files/ENCFF643CGH/ 1921618240 ENCODE Processing Pipeline bc57b6a25ecfef14b114910ccc63a9ad https://www.encodeproject.org/files/ENCFF976RPU/@@download/ENCFF976RPU.bam released s3://encode-public/2016/05/06/5ad83b17-b8ea-445b-a62a-1765726e4c3c/ENCFF976RPU.bam ENCODE3 GRCh38 archived low read length ENCFF511RLN bam bam alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECU/ 1377810107 ENCODE Processing Pipeline 01e82132eda89d388d989c3543b29c5b https://www.encodeproject.org/files/ENCFF511RLN/@@download/ENCFF511RLN.bam released s3://encode-public/2016/05/06/8f883202-dd70-4a46-8b27-b080270d5b22/ENCFF511RLN.bam ENCODE3 GRCh38 archived low read length ENCFF536CTV bam bam alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECQ/, /files/ENCFF643CGH/ 1380554358 ENCODE Processing Pipeline 94f7c1445e7902fda9cf538d9043cabb https://www.encodeproject.org/files/ENCFF536CTV/@@download/ENCFF536CTV.bam released s3://encode-public/2016/05/06/184bccd8-f2cf-4356-abb8-51d12b70a9df/ENCFF536CTV.bam ENCODE3 GRCh38 archived low read length ENCFF958XVX bam bam alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECU/, /files/ENCFF110MCL/ 1478529496 ENCODE Processing Pipeline a0b6a5fc37ce44607216e6bfa151afdb https://www.encodeproject.org/files/ENCFF958XVX/@@download/ENCFF958XVX.bam released s3://encode-public/2020/06/13/5cc75539-239a-4b04-b95a-f901dd4804c9/ENCFF958XVX.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF657CMM bam bam unfiltered alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECQ/, /files/ENCFF110MCL/ 1872966699 ENCODE Processing Pipeline 7b7d1eade1c250a285d313b63c10b6da https://www.encodeproject.org/files/ENCFF657CMM/@@download/ENCFF657CMM.bam released s3://encode-public/2020/06/13/db072a83-1f76-4e07-be70-d73cac036cea/ENCFF657CMM.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF273JYW bam bam unfiltered alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECU/, /files/ENCFF110MCL/ 1850012793 ENCODE Processing Pipeline 0b84af459b3f78dc286c966817e4d2f5 https://www.encodeproject.org/files/ENCFF273JYW/@@download/ENCFF273JYW.bam released s3://encode-public/2020/06/13/07912cd1-f011-4a7a-add3-baa5405ea832/ENCFF273JYW.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF548TWG bam bam alignments GRCh38 ENCSR613TDP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECQ/, /files/ENCFF110MCL/ 1473912341 ENCODE Processing Pipeline 6e1f61bd3317adf4f10298c9714c21ad https://www.encodeproject.org/files/ENCFF548TWG/@@download/ENCFF548TWG.bam released s3://encode-public/2020/06/13/27375745-2749-42c4-9cbc-ed8b0ada2a12/ENCFF548TWG.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF001IEA fastq fastq reads ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 single-ended 92251626 Barbara Wold, Caltech a39a1646be260869aebd1524b8d40f08 https://www.encodeproject.org/files/ENCFF001IEA/@@download/ENCFF001IEA.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/786f58a3-f69b-419a-886c-bccfa23dd86c/ENCFF001IEA.fastq.gz low read depth insufficient read length ENCFF001IEF bigWig bigWig signal mm9 ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 /files/ENCFF001IEN/ 162948573 Barbara Wold, Caltech 8b2dd98220ee07539ac553f7ca722341 https://www.encodeproject.org/files/ENCFF001IEF/@@download/ENCFF001IEF.bigWig archived s3://encode-public/2011/08/11/e0e7335a-75ab-4884-af1f-122da6eb2466/ENCFF001IEF.bigWig Lab custom mm9 archived low read depth insufficient read length ENCFF001IEN bam bam alignments mm9 ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IED/, /files/ENCFF001IEE/ 2501348567 Barbara Wold, Caltech 5e820f2d2fe2ccd4dfac1cbb341be36b https://www.encodeproject.org/files/ENCFF001IEN/@@download/ENCFF001IEN.bam archived s3://encode-public/2011/08/11/e90ead09-b5cb-492a-ab77-7afabd8c3089/ENCFF001IEN.bam Lab custom mm9 archived low read depth insufficient read length ENCFF001IEC fastq fastq reads ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 single-ended 544461243 Barbara Wold, Caltech d8b6f206bd378e242bc51eb0241aa3c1 https://www.encodeproject.org/files/ENCFF001IEC/@@download/ENCFF001IEC.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/fd90966f-89ca-4260-81d1-30a823a9ac91/ENCFF001IEC.fastq.gz low read depth insufficient read length ENCFF001IEB fastq fastq reads ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 single-ended 573855155 Barbara Wold, Caltech 404ad1c6fc84c2f2dfb6311c66182941 https://www.encodeproject.org/files/ENCFF001IEB/@@download/ENCFF001IEB.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/2acc39ce-d18e-41f3-9276-6bde7d389ba4/ENCFF001IEB.fastq.gz low read depth insufficient read length ENCFF001IED fastq fastq reads ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 single-ended 579243394 Barbara Wold, Caltech 3e399079ac1cc8e9f55091258fb0090c https://www.encodeproject.org/files/ENCFF001IED/@@download/ENCFF001IED.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/0b800f5f-e0f1-474e-9174-a4bb35724e9e/ENCFF001IED.fastq.gz low read depth insufficient read length ENCFF001IEE fastq fastq reads ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 single-ended 567381880 Barbara Wold, Caltech 520ada76404ab0f958386701fb7582a3 https://www.encodeproject.org/files/ENCFF001IEE/@@download/ENCFF001IEE.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/93886746-d23e-400d-8adf-a265a959595c/ENCFF001IEE.fastq.gz low read depth insufficient read length ENCFF177BFR bam bam unfiltered alignments mm10-minimal ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF001IEB/, /files/ENCFF806TVZ/, /files/ENCFF001IEA/, /files/ENCFF001IEE/, /files/ENCFF001IED/, /files/ENCFF001IEC/ 2632266501 ENCODE Processing Pipeline 6a5f3e498f3e05b0678cd9e0c93a5d4c https://www.encodeproject.org/files/ENCFF177BFR/@@download/ENCFF177BFR.bam archived s3://encode-public/2015/11/18/70cd0286-a685-422e-9b33-5ea6fb354183/ENCFF177BFR.bam ENCODE3 mm10-minimal archived low read depth insufficient read length ENCFF637XMC bam bam unfiltered alignments mm10 ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF001IED/, /files/ENCFF001IEE/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IEA/, /files/ENCFF018NEO/ 2634489097 ENCODE Processing Pipeline 1aa08f142c4766e3a434930767d3e000 https://www.encodeproject.org/files/ENCFF637XMC/@@download/ENCFF637XMC.bam released s3://encode-public/2016/10/26/1c33e2e1-fbb0-462e-9d1c-6995dfdd8862/ENCFF637XMC.bam ENCODE3 mm10 archived low read depth insufficient read length ENCFF258NUS bam bam alignments mm10 ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF001IED/, /files/ENCFF001IEE/, /files/ENCFF001IEB/, /files/ENCFF001IEC/, /files/ENCFF001IEA/, /files/ENCFF018NEO/ 817258349 ENCODE Processing Pipeline 1bcf4e9fe52a21c433be9b3a82c062a4 https://www.encodeproject.org/files/ENCFF258NUS/@@download/ENCFF258NUS.bam released s3://encode-public/2016/10/26/34eddfc6-6889-4133-96d5-bb43b8372b8e/ENCFF258NUS.bam ENCODE3 mm10 archived low read depth insufficient read length ENCFF295BCE bam bam unfiltered alignments mm10 ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEE/, /files/ENCFF309GLL/, /files/ENCFF001IEC/, /files/ENCFF001IED/ 2657961993 ENCODE Processing Pipeline c5ccc66ea5149c1d535256afea6eebcb https://www.encodeproject.org/files/ENCFF295BCE/@@download/ENCFF295BCE.bam released s3://encode-public/2020/11/06/6946f59d-2d87-41c5-9cd7-f220b2f320f2/ENCFF295BCE.bam ENCODE4 v1.6.1 mm10 released low read depth insufficient read length ENCFF118JYB bam bam alignments mm10 ENCSR000AJS Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 32 /files/ENCFF001IEA/, /files/ENCFF001IEB/, /files/ENCFF001IEE/, /files/ENCFF309GLL/, /files/ENCFF001IEC/, /files/ENCFF001IED/ 988430430 ENCODE Processing Pipeline 3a14113a70064d774298a4227c3470b7 https://www.encodeproject.org/files/ENCFF118JYB/@@download/ENCFF118JYB.bam released s3://encode-public/2020/11/06/65940fe4-0c08-48a7-a2e4-c2df0dc13206/ENCFF118JYB.bam ENCODE4 v1.6.1 mm10 released low read depth insufficient read length ENCFF000BGU bam bam alignments hg19 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 308014434 Bradley Bernstein, Broad ba1848e80e53576a31852561f680ecd3 https://www.encodeproject.org/files/ENCFF000BGU/@@download/ENCFF000BGU.bam archived s3://encode-public/2010/11/16/4028a737-b409-41e3-8789-70fb70644823/ENCFF000BGU.bam Lab custom hg19 archived low read depth, low read length, inconsistent platforms ENCFF000BGV bam bam alignments hg19 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 696601876 Bradley Bernstein, Broad c6da6f2b59a149883b0bd936a4fcfe54 https://www.encodeproject.org/files/ENCFF000BGV/@@download/ENCFF000BGV.bam archived s3://encode-public/2010/11/16/ad339bb8-907e-4ec3-b5ee-460db04bd652/ENCFF000BGV.bam Lab custom hg19 archived low read depth, low read length, inconsistent platforms ENCFF000BGY bigWig bigWig signal hg19 ENCSR000AMN Control ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 438995855 Bradley Bernstein, Broad de3d6a50a32690f6955f087714dc95bc https://www.encodeproject.org/files/ENCFF000BGY/@@download/ENCFF000BGY.bigWig archived s3://encode-public/2010/11/16/ce895131-2662-41a9-8028-8b3b6576586f/ENCFF000BGY.bigWig Lab custom hg19 archived low read depth, low read length, inconsistent platforms ENCFF000BHE fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 single-ended 374390662 Bradley Bernstein, Broad f72c24f7810c75ae99bde751e763a1f7 SRA:SRR10049715 https://www.encodeproject.org/files/ENCFF000BHE/@@download/ENCFF000BHE.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2010/11/16/056cbe1e-b516-4f9c-a557-11594b7eed3c/ENCFF000BHE.fastq.gz low read depth, low read length, inconsistent platforms ENCFF000BHF fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 single-ended 757910822 Bradley Bernstein, Broad d0ea13e22c680b34e0239b465e5c977f SRA:SRR10049716 https://www.encodeproject.org/files/ENCFF000BHF/@@download/ENCFF000BHF.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/f5e4c00d-0646-4fbd-b625-d5848c72a0d8/ENCFF000BHF.fastq.gz low read depth, low read length, inconsistent platforms ENCFF997HCS tagAlign tagAlign alignments hg19 ENCSR000AMN Control ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 125037897 Anshul Kundaje, Stanford b1b5f3a4f2038ca27e3330875bee31b0 https://www.encodeproject.org/files/ENCFF997HCS/@@download/ENCFF997HCS.tagAlign.gz archived s3://encode-public/2016/07/19/8d345a3d-ebed-4b51-bfae-fc8d215ca5f4/ENCFF997HCS.tagAlign.gz Lab custom hg19 archived low read depth, low read length, inconsistent platforms ENCFF556RIX fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 530591748 Bradley Bernstein, Broad 1ceace3a140b68d6342c2771682c85f3 SRA:SRR10049711 https://www.encodeproject.org/files/ENCFF556RIX/@@download/ENCFF556RIX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/4d95cb0b-75bd-4a4b-82e6-2e8ca56fb859/ENCFF556RIX.fastq.gz low read depth, low read length, inconsistent platforms ENCFF152UJF fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 187006480 Bradley Bernstein, Broad 69026a9b539464894f712a0e5ca1caba SRA:SRR10049709 https://www.encodeproject.org/files/ENCFF152UJF/@@download/ENCFF152UJF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/ed92315a-af7d-4006-a46d-282056da2def/ENCFF152UJF.fastq.gz low read depth, low read length, inconsistent platforms ENCFF702WJD fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 182255424 Bradley Bernstein, Broad 14d0d465d1853410e59fbb3ac4a66305 SRA:SRR10049710 https://www.encodeproject.org/files/ENCFF702WJD/@@download/ENCFF702WJD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/87762a6b-b36f-4c4e-b8f4-2d31ed65949d/ENCFF702WJD.fastq.gz low read depth, low read length, inconsistent platforms ENCFF749GHL fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 522073546 Bradley Bernstein, Broad 46cfd86b1345c6c5248f7b9c5cc7a6f2 SRA:SRR10049712 https://www.encodeproject.org/files/ENCFF749GHL/@@download/ENCFF749GHL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/bccd059f-1871-4fb0-9a7a-cc409875c98b/ENCFF749GHL.fastq.gz low read depth, low read length, inconsistent platforms ENCFF913IHA fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 522734356 Bradley Bernstein, Broad 8cf53e12ee740d96045ce3dd18b0abe2 SRA:SRR10049713 https://www.encodeproject.org/files/ENCFF913IHA/@@download/ENCFF913IHA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/a4b7c918-027c-4688-a406-899a05ce5d20/ENCFF913IHA.fastq.gz low read depth, low read length, inconsistent platforms ENCFF788YKS fastq fastq reads ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 536215145 Bradley Bernstein, Broad 4e8d9c692481f94e5e58e024430423eb SRA:SRR10049714 https://www.encodeproject.org/files/ENCFF788YKS/@@download/ENCFF788YKS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/3839082f-b536-482a-a882-bb81e6d83797/ENCFF788YKS.fastq.gz low read depth, low read length, inconsistent platforms ENCFF813ZYQ bam bam alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF000BHE/, /files/ENCFF749GHL/, /files/ENCFF556RIX/, /files/ENCFF643CGH/, /files/ENCFF913IHA/, /files/ENCFF788YKS/ 2027623363 ENCODE Processing Pipeline 396777e59406bb9b0e93107461435984 https://www.encodeproject.org/files/ENCFF813ZYQ/@@download/ENCFF813ZYQ.bam released s3://encode-public/2017/04/06/b10f83e7-5f79-40ce-818b-f75b8ba60d20/ENCFF813ZYQ.bam ENCODE3 GRCh38 archived low read depth, low read length, inconsistent platforms ENCFF607BMM bam bam unfiltered alignments hg19 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF807MUK/, /files/ENCFF000BHF/, /files/ENCFF702WJD/, /files/ENCFF152UJF/ 1502460610 ENCODE Processing Pipeline 2af4396c5fcd95d5a9970030520404c6 https://www.encodeproject.org/files/ENCFF607BMM/@@download/ENCFF607BMM.bam released s3://encode-public/2017/04/06/6a14072d-d700-4fb0-971b-4be46a4f8c00/ENCFF607BMM.bam ENCODE3 hg19 archived low read depth, low read length, inconsistent platforms ENCFF417CEL bam bam unfiltered alignments hg19 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF000BHE/, /files/ENCFF749GHL/, /files/ENCFF807MUK/, /files/ENCFF556RIX/, /files/ENCFF913IHA/, /files/ENCFF788YKS/ 3257338022 ENCODE Processing Pipeline 9108f795b7da10b7c1432d302f47addc https://www.encodeproject.org/files/ENCFF417CEL/@@download/ENCFF417CEL.bam released s3://encode-public/2017/04/06/4e67b5f9-c1ca-4241-8e23-6a19a6ee436a/ENCFF417CEL.bam ENCODE3 hg19 archived low read depth, low read length, inconsistent platforms ENCFF903ATW bam bam alignments hg19 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF807MUK/, /files/ENCFF000BHF/, /files/ENCFF702WJD/, /files/ENCFF152UJF/ 861296566 ENCODE Processing Pipeline 84610789702d8793a34ee969165a11be https://www.encodeproject.org/files/ENCFF903ATW/@@download/ENCFF903ATW.bam released s3://encode-public/2017/04/06/b9ac497c-db6d-4282-aa18-2a9a6103c461/ENCFF903ATW.bam ENCODE3 hg19 archived low read depth, low read length, inconsistent platforms ENCFF801RTD bam bam alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF643CGH/, /files/ENCFF000BHF/, /files/ENCFF702WJD/, /files/ENCFF152UJF/ 861045962 ENCODE Processing Pipeline 94afbcfcf2f1e50c100aaf4dd95f49a6 https://www.encodeproject.org/files/ENCFF801RTD/@@download/ENCFF801RTD.bam released s3://encode-public/2017/04/06/1b8b8889-50df-4def-9233-2bf63eea5b4f/ENCFF801RTD.bam ENCODE3 GRCh38 archived low read depth, low read length, inconsistent platforms ENCFF062WDT bam bam alignments hg19 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF000BHE/, /files/ENCFF749GHL/, /files/ENCFF807MUK/, /files/ENCFF556RIX/, /files/ENCFF913IHA/, /files/ENCFF788YKS/ 2027823600 ENCODE Processing Pipeline e77c0464d42082541e84260ae12fc74f https://www.encodeproject.org/files/ENCFF062WDT/@@download/ENCFF062WDT.bam released s3://encode-public/2017/04/06/85fb6b49-54cc-4697-bd13-b35c6cc4a472/ENCFF062WDT.bam ENCODE3 hg19 archived low read depth, low read length, inconsistent platforms ENCFF115JNM bam bam unfiltered alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF643CGH/, /files/ENCFF000BHF/, /files/ENCFF702WJD/, /files/ENCFF152UJF/ 1511127683 ENCODE Processing Pipeline 19d5cd179241f94832db9215017bb23d https://www.encodeproject.org/files/ENCFF115JNM/@@download/ENCFF115JNM.bam released s3://encode-public/2017/04/06/57a32407-8ffc-4f3b-ab9f-37b12bc59ccc/ENCFF115JNM.bam ENCODE3 GRCh38 archived low read depth, low read length, inconsistent platforms ENCFF861GBM bam bam unfiltered alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF000BHE/, /files/ENCFF749GHL/, /files/ENCFF556RIX/, /files/ENCFF643CGH/, /files/ENCFF913IHA/, /files/ENCFF788YKS/ 3280711557 ENCODE Processing Pipeline 3293e35675bf142aaf66df65e27a2301 https://www.encodeproject.org/files/ENCFF861GBM/@@download/ENCFF861GBM.bam released s3://encode-public/2017/04/06/6a9f41d0-ad7a-405c-a4b4-aaaa37556f65/ENCFF861GBM.bam ENCODE3 GRCh38 archived low read depth, low read length, inconsistent platforms ENCFF445FFM bam bam unfiltered alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF702WJD/, /files/ENCFF152UJF/, /files/ENCFF000BHF/, /files/ENCFF110MCL/ 1473994837 ENCODE Processing Pipeline 5d66c420864cbe705f55fed81637cab0 https://www.encodeproject.org/files/ENCFF445FFM/@@download/ENCFF445FFM.bam released s3://encode-public/2020/09/03/07e790b1-aa05-45ee-aa12-9dcbf25a84b6/ENCFF445FFM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, inconsistent platforms ENCFF048TQO bam bam unfiltered alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF788YKS/, /files/ENCFF110MCL/, /files/ENCFF913IHA/, /files/ENCFF000BHE/, /files/ENCFF749GHL/, /files/ENCFF556RIX/ 3198321857 ENCODE Processing Pipeline 4d3eb56df5ff3c48270dd31fb30415df https://www.encodeproject.org/files/ENCFF048TQO/@@download/ENCFF048TQO.bam released s3://encode-public/2020/09/03/54194419-86df-4de0-a92b-9f413500304f/ENCFF048TQO.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, inconsistent platforms ENCFF227YFZ bam bam alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF788YKS/, /files/ENCFF110MCL/, /files/ENCFF913IHA/, /files/ENCFF000BHE/, /files/ENCFF749GHL/, /files/ENCFF556RIX/ 2220600260 ENCODE Processing Pipeline b137da67220de8933e48791367cc9bdc https://www.encodeproject.org/files/ENCFF227YFZ/@@download/ENCFF227YFZ.bam released s3://encode-public/2020/09/03/588904d6-e9af-4bd3-82e2-36944815e6e2/ENCFF227YFZ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, inconsistent platforms ENCFF887PCJ bam bam alignments GRCh38 ENCSR000AMN Control ChIP-seq /human-donors/ENCDO830BUW/ CL:0002327 mammary epithelial cell primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF702WJD/, /files/ENCFF152UJF/, /files/ENCFF000BHF/, /files/ENCFF110MCL/ 949839344 ENCODE Processing Pipeline 0250f9ccda70b2c5f46574b40a5a4890 https://www.encodeproject.org/files/ENCFF887PCJ/@@download/ENCFF887PCJ.bam released s3://encode-public/2020/09/03/b51064e6-eeef-4ada-879e-36f8fb421497/ENCFF887PCJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, inconsistent platforms ENCFF746SQQ fastq fastq reads ENCSR671YDD Control ChIP-seq /worm-donors/ENCDO975RPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177735/'], '@type': ['Target', 'Item'], 'name': 'aly-1-celegans', 'label': 'aly-1', '@id': '/targets/aly-1-celegans/', 'title': 'aly-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '77950d6f-e3c4-4074-9573-d10f8feec475', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 537639538 Kevin White, UChicago b3705cbd2e52f0780552d707e64ab9f4 https://www.encodeproject.org/files/ENCFF746SQQ/@@download/ENCFF746SQQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/53ffddbb-0d24-4ca0-8460-f2995c47d688/ENCFF746SQQ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF058WHH bam bam alignments ce10 ENCSR671YDD Control ChIP-seq /worm-donors/ENCDO975RPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177735/'], '@type': ['Target', 'Item'], 'name': 'aly-1-celegans', 'label': 'aly-1', '@id': '/targets/aly-1-celegans/', 'title': 'aly-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '77950d6f-e3c4-4074-9573-d10f8feec475', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF746SQQ/ 766970643 Kevin White, UChicago a1ba184d8ef13610adc5f494a681e48a https://www.encodeproject.org/files/ENCFF058WHH/@@download/ENCFF058WHH.bam released s3://encode-public/2015/08/19/82d69967-0a70-4c83-95f5-d118c01ad6bd/ENCFF058WHH.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF592XPX bigWig bigWig read-depth normalized signal ce10 ENCSR671YDD Control ChIP-seq /worm-donors/ENCDO975RPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177735/'], '@type': ['Target', 'Item'], 'name': 'aly-1-celegans', 'label': 'aly-1', '@id': '/targets/aly-1-celegans/', 'title': 'aly-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '77950d6f-e3c4-4074-9573-d10f8feec475', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF058WHH/ 9960709 Kevin White, UChicago aeb1969fcdde8f2bc8d91e0c26ba2d14 https://www.encodeproject.org/files/ENCFF592XPX/@@download/ENCFF592XPX.bigWig released s3://encode-public/2015/08/20/bb03df2f-dfce-4c94-b6b7-29a984acfe50/ENCFF592XPX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF243AYQ bigWig bigWig signal of unique reads ce10 ENCSR671YDD Control ChIP-seq /worm-donors/ENCDO975RPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177735/'], '@type': ['Target', 'Item'], 'name': 'aly-1-celegans', 'label': 'aly-1', '@id': '/targets/aly-1-celegans/', 'title': 'aly-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '77950d6f-e3c4-4074-9573-d10f8feec475', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF058WHH/ 9962205 Kevin White, UChicago 24780b8fab5863b4e8e2356e1a186752 https://www.encodeproject.org/files/ENCFF243AYQ/@@download/ENCFF243AYQ.bigWig released s3://encode-public/2015/08/20/59fde230-e0d5-4bc0-a909-ca68ca9af4e6/ENCFF243AYQ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF775DUJ bam bam alignments ce11 ENCSR671YDD Control ChIP-seq /worm-donors/ENCDO975RPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177735/'], '@type': ['Target', 'Item'], 'name': 'aly-1-celegans', 'label': 'aly-1', '@id': '/targets/aly-1-celegans/', 'title': 'aly-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '77950d6f-e3c4-4074-9573-d10f8feec475', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF746SQQ/ 767603996 Kevin White, UChicago 6934e5ac318e38f5b4aea9bd62e88830 https://www.encodeproject.org/files/ENCFF775DUJ/@@download/ENCFF775DUJ.bam released s3://encode-public/2016/01/16/3a4fae42-7cd8-4436-97d0-742a23c32f47/ENCFF775DUJ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF533XQK bigWig bigWig signal of unique reads ce11 ENCSR671YDD Control ChIP-seq /worm-donors/ENCDO975RPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177735/'], '@type': ['Target', 'Item'], 'name': 'aly-1-celegans', 'label': 'aly-1', '@id': '/targets/aly-1-celegans/', 'title': 'aly-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '77950d6f-e3c4-4074-9573-d10f8feec475', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF775DUJ/ 9959379 Kevin White, UChicago 811aaa78aad610c15df9487f8c493b39 https://www.encodeproject.org/files/ENCFF533XQK/@@download/ENCFF533XQK.bigWig released s3://encode-public/2016/02/03/3a44e62e-c51b-471d-9490-879837af491c/ENCFF533XQK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF126OXZ bigWig bigWig read-depth normalized signal ce11 ENCSR671YDD Control ChIP-seq /worm-donors/ENCDO975RPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177735/'], '@type': ['Target', 'Item'], 'name': 'aly-1-celegans', 'label': 'aly-1', '@id': '/targets/aly-1-celegans/', 'title': 'aly-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '77950d6f-e3c4-4074-9573-d10f8feec475', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF775DUJ/ 9959230 Kevin White, UChicago 74832ba55fccfb061fbb0b10a284c164 https://www.encodeproject.org/files/ENCFF126OXZ/@@download/ENCFF126OXZ.bigWig released s3://encode-public/2016/02/03/0145b052-f445-4500-9a69-d3631c415930/ENCFF126OXZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF000RXU bam bam alignments hg19 ENCSR000DMG Control ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 35 504042210 Vishwanath Iyer, UTA 1680f75ef8336851fae15654707ef974 https://www.encodeproject.org/files/ENCFF000RXU/@@download/ENCFF000RXU.bam archived s3://encode-public/2012/07/26/5fbf12d3-b399-46ee-80f1-20038e2d4a04/ENCFF000RXU.bam Lab custom hg19 archived insufficient read depth ENCFF000RXW bigWig bigWig signal hg19 ENCSR000DMG Control ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 3873494192 Vishwanath Iyer, UTA 258a30ac6efbaac039d5f9fae61e403d https://www.encodeproject.org/files/ENCFF000RXW/@@download/ENCFF000RXW.bigWig archived s3://encode-public/2012/07/26/a4594a92-5ea4-4852-ae61-ab06a86e7df4/ENCFF000RXW.bigWig Lab custom hg19 archived insufficient read depth ENCFF000RYG fastq fastq reads ENCSR000DMG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 951788907 Vishwanath Iyer, UTA 56b7cea16528ced8bc079b4f380ed99c https://www.encodeproject.org/files/ENCFF000RYG/@@download/ENCFF000RYG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/5e4696aa-21fd-485b-84b6-4fd2ea58cd4b/ENCFF000RYG.fastq.gz insufficient read depth ENCFF169VLZ bam bam unfiltered alignments hg19 ENCSR000DMG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RYG/ 1067524792 ENCODE Processing Pipeline 86988b8210075429cf645ebc814416f7 https://www.encodeproject.org/files/ENCFF169VLZ/@@download/ENCFF169VLZ.bam released s3://encode-public/2016/12/03/3d8ff30d-303a-4160-90c9-3de7a8f93a41/ENCFF169VLZ.bam ENCODE3 hg19 archived insufficient read depth ENCFF141AYW bam bam unfiltered alignments GRCh38 ENCSR000DMG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RYG/ 1069304152 ENCODE Processing Pipeline 6d0411ab0949dc5d0c7ee3d40dd5977f https://www.encodeproject.org/files/ENCFF141AYW/@@download/ENCFF141AYW.bam released s3://encode-public/2016/12/03/736cc42e-e1b8-4366-ae66-69312c10e934/ENCFF141AYW.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF140XGV bam bam alignments hg19 ENCSR000DMG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RYG/ 350183268 ENCODE Processing Pipeline c3214cf1d661701cc7c7c258e526c145 https://www.encodeproject.org/files/ENCFF140XGV/@@download/ENCFF140XGV.bam released s3://encode-public/2016/12/03/017b38b6-a82e-4559-b4a6-a8b3f4c5e343/ENCFF140XGV.bam ENCODE3 hg19 archived insufficient read depth ENCFF534YMV bam bam alignments GRCh38 ENCSR000DMG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RYG/ 350128307 ENCODE Processing Pipeline 2c6ad936260fe9e8b111456a4758f11b https://www.encodeproject.org/files/ENCFF534YMV/@@download/ENCFF534YMV.bam released s3://encode-public/2016/12/03/546a8052-f9e7-487c-833d-1b4b3275d7ee/ENCFF534YMV.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF062ETD bam bam alignments GRCh38 ENCSR000DMG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RYG/, /files/ENCFF110MCL/ 331902866 ENCODE Processing Pipeline 70c295c1d1819f2fb66691cb0624de7b https://www.encodeproject.org/files/ENCFF062ETD/@@download/ENCFF062ETD.bam released s3://encode-public/2020/09/03/81298a3f-f955-49c2-be92-14a25646f6f4/ENCFF062ETD.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF188TDG bam bam unfiltered alignments GRCh38 ENCSR000DMG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RYG/, /files/ENCFF110MCL/ 1093391585 ENCODE Processing Pipeline e243f35550c28e57109658262143c544 https://www.encodeproject.org/files/ENCFF188TDG/@@download/ENCFF188TDG.bam released s3://encode-public/2020/09/03/7515bba7-2ac8-471b-8d05-72e799c360fd/ENCFF188TDG.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF001HWM bigWig bigWig raw signal hg19 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HWN/ 232717774 John Stamatoyannopoulos, UW 04203a548280c2005f8a10738272c9ed https://www.encodeproject.org/files/ENCFF001HWM/@@download/ENCFF001HWM.bigWig archived s3://encode-public/2011/06/25/72ec9f47-d9a0-4a6f-9f6f-49d6b722dfb2/ENCFF001HWM.bigWig Lab custom hg19 archived low read length ENCFF001HWN bam bam alignments hg19 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HWY/ 1347191574 John Stamatoyannopoulos, UW 8e4598bd0dee85ccbe1fc4674a62edab https://www.encodeproject.org/files/ENCFF001HWN/@@download/ENCFF001HWN.bam archived s3://encode-public/2011/06/25/508cdd38-8eeb-403b-83ae-294972949a48/ENCFF001HWN.bam Lab custom hg19 archived low read length ENCFF001HWY fastq fastq reads ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 1412079795 John Stamatoyannopoulos, UW db23c86f7a242ac10d5f3aaf280cb926 https://www.encodeproject.org/files/ENCFF001HWY/@@download/ENCFF001HWY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/330416d5-8606-489d-a456-2c1e24006f29/ENCFF001HWY.fastq.gz low read length ENCFF671FKH bam bam unfiltered alignments GRCh38 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HWY/ 1693528621 ENCODE Processing Pipeline 77179713a848494246ca458505bce0b7 https://www.encodeproject.org/files/ENCFF671FKH/@@download/ENCFF671FKH.bam released s3://encode-public/2016/08/09/67d3dd48-c58a-4151-8263-4e91f188cd2d/ENCFF671FKH.bam ENCODE3 GRCh38 archived low read length ENCFF870RFE bam bam alignments GRCh38 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HWY/ 1251137356 ENCODE Processing Pipeline 9a20db6a436034ad0b8040c2a95bb941 https://www.encodeproject.org/files/ENCFF870RFE/@@download/ENCFF870RFE.bam released s3://encode-public/2016/08/09/a006f1d0-c836-4003-9352-a693ee353b74/ENCFF870RFE.bam ENCODE3 GRCh38 archived low read length ENCFF518AQJ bam bam unfiltered alignments hg19 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HWY/ 1684467929 ENCODE Processing Pipeline a7c9951a1ecc1a664bc69ded224be788 https://www.encodeproject.org/files/ENCFF518AQJ/@@download/ENCFF518AQJ.bam released s3://encode-public/2016/11/13/26ccb3f4-a8d1-4d48-8ddd-a7102ee06b6a/ENCFF518AQJ.bam ENCODE3 hg19 archived low read length ENCFF634UTF bam bam alignments hg19 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HWY/ 1251659984 ENCODE Processing Pipeline 94202dcfb1f8ee0a68216b2ef612b4b0 https://www.encodeproject.org/files/ENCFF634UTF/@@download/ENCFF634UTF.bam released s3://encode-public/2016/11/13/d11f3b68-8cdc-47b5-8ba4-f798ef596aaf/ENCFF634UTF.bam ENCODE3 hg19 archived low read length ENCFF390RCK bam bam unfiltered alignments GRCh38 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HWY/, /files/ENCFF110MCL/ 1655363148 ENCODE Processing Pipeline b586269eae74a3b9f3007568022484f6 https://www.encodeproject.org/files/ENCFF390RCK/@@download/ENCFF390RCK.bam released s3://encode-public/2020/09/03/38795c91-6c09-4f68-9d70-9ff35f74cf7b/ENCFF390RCK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF479IKS bam bam alignments GRCh38 ENCSR000DXE Control ChIP-seq /human-donors/ENCDO103AAA/ CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HWY/, /files/ENCFF110MCL/ 1354559597 ENCODE Processing Pipeline 25a5186bb9fcf2947038c952b7dae191 https://www.encodeproject.org/files/ENCFF479IKS/@@download/ENCFF479IKS.bam released s3://encode-public/2020/09/03/d9af34ee-d003-4b18-afe4-88c8ae94006c/ENCFF479IKS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF900DXM fastq fastq reads ENCSR308JFE Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2016-10-25 ENCODE see document 200-600, 300-800 1 1_2 36 single-ended 2458000750 Bradley Bernstein, Broad de5908419084e1c608a68fe5beda3f5d SRA:SRR5338587 https://www.encodeproject.org/files/ENCFF900DXM/@@download/ENCFF900DXM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/10/25/8a271110-81e0-4fc6-b8d4-1f5b6f0e344b/ENCFF900DXM.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF949QOX fastq fastq reads ENCSR308JFE Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2016-10-25 ENCODE see document 200-600, 300-800 1 1_1 36 single-ended 1604161153 Bradley Bernstein, Broad a77935bfff39e123394de6c787e2065c SRA:SRR5338588 https://www.encodeproject.org/files/ENCFF949QOX/@@download/ENCFF949QOX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/25/2c9ad7e8-d8dc-4556-8f5d-86ec80a2f88e/ENCFF949QOX.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF466GUH bam bam alignments GRCh38 ENCSR308JFE Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2016-10-25 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF900DXM/, /files/ENCFF110MCL/, /files/ENCFF949QOX/ 3759902382 ENCODE Processing Pipeline 25d9c8a46aa0b8ed7f112dc6c6f16c8c https://www.encodeproject.org/files/ENCFF466GUH/@@download/ENCFF466GUH.bam released 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 single-ended 1393988536 Michael Snyder, Stanford c31f21413e37346593d9efa60f78a72a SRA:SRR5111063 https://www.encodeproject.org/files/ENCFF002ECW/@@download/ENCFF002ECW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/5dfc671e-3853-466f-aae4-da5bede08173/ENCFF002ECW.fastq.gz low read length ENCFF335IPE bam bam alignments hg19 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECW/ 1350023836 ENCODE Processing Pipeline 45381977690b74553e5fb663a4c23fb1 https://www.encodeproject.org/files/ENCFF335IPE/@@download/ENCFF335IPE.bam released s3://encode-public/2015/10/29/21344b23-68bd-4887-bd18-058e204548a3/ENCFF335IPE.bam ENCODE3 hg19 archived low read length ENCFF879OQC bam bam alignments hg19 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECS/, /files/ENCFF807MUK/ 1357478021 ENCODE Processing Pipeline 0ebe2bcbe8a12220c15a66b1c4ca4e5d https://www.encodeproject.org/files/ENCFF879OQC/@@download/ENCFF879OQC.bam released s3://encode-public/2015/10/29/474db215-6e9c-43c5-b396-b466ae857952/ENCFF879OQC.bam ENCODE3 hg19 archived low read length ENCFF993HAX bam bam unfiltered alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECW/ 1887326466 ENCODE Processing Pipeline a133eaca2f93de687b4d642f90a838fc https://www.encodeproject.org/files/ENCFF993HAX/@@download/ENCFF993HAX.bam released s3://encode-public/2016/05/06/b9757739-ad89-4b29-bae6-ad28543f4209/ENCFF993HAX.bam ENCODE3 GRCh38 archived low read length ENCFF674KBD bam bam unfiltered alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECS/, /files/ENCFF643CGH/ 1874347983 ENCODE Processing Pipeline 8fb5dfa11b3ba92558edaf3081fcc30c https://www.encodeproject.org/files/ENCFF674KBD/@@download/ENCFF674KBD.bam released s3://encode-public/2016/05/06/10ce94f7-1f74-4f7e-85d9-c080743f86c1/ENCFF674KBD.bam ENCODE3 GRCh38 archived low read length ENCFF156FED bam bam alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECW/ 1349303385 ENCODE Processing Pipeline ee07408998c288c2b9b087589207caff https://www.encodeproject.org/files/ENCFF156FED/@@download/ENCFF156FED.bam released s3://encode-public/2016/05/06/b37a8d6a-10b3-4fb6-8581-89976af4fceb/ENCFF156FED.bam ENCODE3 GRCh38 archived low read length ENCFF577FNG bam bam alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECS/, /files/ENCFF643CGH/ 1356794990 ENCODE Processing Pipeline 8e1a12112216401ff4c7aaaa8314e6a1 https://www.encodeproject.org/files/ENCFF577FNG/@@download/ENCFF577FNG.bam released s3://encode-public/2016/05/06/cc6f3c58-5899-435f-80a8-cf81dc6856c3/ENCFF577FNG.bam ENCODE3 GRCh38 archived low read length ENCFF719KLH bam bam unfiltered alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECW/, /files/ENCFF110MCL/ 1838494837 ENCODE Processing Pipeline 45ba07b52a29ca4e5f674cde74c9ab8a https://www.encodeproject.org/files/ENCFF719KLH/@@download/ENCFF719KLH.bam released s3://encode-public/2020/06/13/4a390ad3-583b-47cf-b81d-127b34c3456c/ENCFF719KLH.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF661NDQ bam bam unfiltered alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECS/, /files/ENCFF110MCL/ 1825740833 ENCODE Processing Pipeline 7fcd2f744816c715e4bfea5ab0695555 https://www.encodeproject.org/files/ENCFF661NDQ/@@download/ENCFF661NDQ.bam released s3://encode-public/2020/06/13/95232e1e-d3f0-4bd2-9591-24546e3f5b44/ENCFF661NDQ.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF005NXS bam bam alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECW/, /files/ENCFF110MCL/ 1443776770 ENCODE Processing Pipeline 75336eba63f541ea8a8e2affe4ed2b07 https://www.encodeproject.org/files/ENCFF005NXS/@@download/ENCFF005NXS.bam released s3://encode-public/2020/06/13/b5d9363c-f30f-4001-a0e9-1ccd35b0a0b5/ENCFF005NXS.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF253OGH bam bam alignments GRCh38 ENCSR080EOT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECS/, /files/ENCFF110MCL/ 1450189742 ENCODE Processing Pipeline 20c5215bf0bfa800130e22e1cd847ce7 https://www.encodeproject.org/files/ENCFF253OGH/@@download/ENCFF253OGH.bam released s3://encode-public/2020/06/13/247276a5-7b31-46a2-a65f-4b166095d870/ENCFF253OGH.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF001MMQ bam bam alignments mm9 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 /files/ENCFF001MMU/ 1806319410 Ross Hardison, PennState faebb817130e576844cedcbb1fdb9a49 https://www.encodeproject.org/files/ENCFF001MMQ/@@download/ENCFF001MMQ.bam archived s3://encode-public/2011/11/05/78850a76-f806-4e34-b2bb-18e4e560b50d/ENCFF001MMQ.bam Lab custom mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMS bam bam alignments mm9 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 48 /files/ENCFF001MMW/ 1538814362 Ross Hardison, PennState 4e84f274271f3bd548890106b711431d https://www.encodeproject.org/files/ENCFF001MMS/@@download/ENCFF001MMS.bam archived s3://encode-public/2011/11/05/15b9d820-9686-468e-b79d-de4b481118b8/ENCFF001MMS.bam Lab custom mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMT bigWig bigWig signal mm9 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 2859178689 Ross Hardison, PennState 05ae0dcd489fec1ece7ea27d7db66bd6 https://www.encodeproject.org/files/ENCFF001MMT/@@download/ENCFF001MMT.bigWig archived s3://encode-public/2011/11/05/a1606e58-3970-4afb-a021-0242eb45a5bf/ENCFF001MMT.bigWig Lab custom mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMU fastq fastq reads ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 single-ended 1426416172 Ross Hardison, PennState 4e4885d2a4513db75d25557045e70255 https://www.encodeproject.org/files/ENCFF001MMU/@@download/ENCFF001MMU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2011/11/05/4d646583-5fc7-48c5-973f-8a35beae3559/ENCFF001MMU.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF001MMV bigWig bigWig signal mm9 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 2674892014 Ross Hardison, PennState f7455a125f32ed94a555168758881eff https://www.encodeproject.org/files/ENCFF001MMV/@@download/ENCFF001MMV.bigWig archived s3://encode-public/2011/11/05/1cae9327-1ac9-493d-9326-408a71ab85cd/ENCFF001MMV.bigWig Lab custom mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF001MMW fastq fastq reads ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 48 single-ended 1249833015 Ross Hardison, PennState 9c3eb16d28b9f531b1de4826ff934048 https://www.encodeproject.org/files/ENCFF001MMW/@@download/ENCFF001MMW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/648fedf3-db48-430e-94a5-cab1a4ee74ee/ENCFF001MMW.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF001MMX bigWig bigWig signal mm9 ENCSR000DIK Control ChIP-seq CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 4359087761 Ross Hardison, PennState 0a2245f686dac1de5f325953d7a6383c https://www.encodeproject.org/files/ENCFF001MMX/@@download/ENCFF001MMX.bigWig archived s3://encode-public/2011/11/05/08c832e0-ab73-4787-a0b5-7ac96cb1b6c1/ENCFF001MMX.bigWig Lab custom mm9 archived low read length, mixed read lengths, inconsistent platforms ENCFF910AGQ bam bam unfiltered alignments mm10-minimal ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 /files/ENCFF806TVZ/, /files/ENCFF001MMU/ 1911850699 J. Michael Cherry, Stanford 0808769e422a3b0eb2a4afee841e1b84 https://www.encodeproject.org/files/ENCFF910AGQ/@@download/ENCFF910AGQ.bam archived s3://encode-public/2015/02/10/f69f9fde-4b2b-44df-bd74-ac57280a5552/ENCFF910AGQ.bam ENCODE3 mm10-minimal archived low read length, mixed read lengths, inconsistent platforms ENCFF238LRI bam bam unfiltered alignments mm10-minimal ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MMW/ 1622311603 J. Michael Cherry, Stanford 5091ebe2d7916e4aa20c033d795bba36 https://www.encodeproject.org/files/ENCFF238LRI/@@download/ENCFF238LRI.bam archived s3://encode-public/2015/02/10/838b7656-e985-419b-aafe-05bcae0c35ec/ENCFF238LRI.bam ENCODE3 mm10-minimal archived low read length, mixed read lengths, inconsistent platforms ENCFF876HOP bam bam alignments mm10-minimal ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MMW/ 1232355626 ENCODE Processing Pipeline 5dc84778a850f5abb7844894f58662a5 https://www.encodeproject.org/files/ENCFF876HOP/@@download/ENCFF876HOP.bam archived s3://encode-public/2015/05/24/e5685f1d-eac4-420f-8d11-204ec247e1dc/ENCFF876HOP.bam ENCODE3 mm10-minimal archived low read length, mixed read lengths, inconsistent platforms ENCFF685MRG bam bam alignments mm10-minimal ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 /files/ENCFF806TVZ/, /files/ENCFF001MMU/ 1388412215 ENCODE Processing Pipeline 7db3a087252e353a5da763fec19e9a4a https://www.encodeproject.org/files/ENCFF685MRG/@@download/ENCFF685MRG.bam archived s3://encode-public/2015/05/24/2158ce35-84fa-4312-b212-c19e13fe7168/ENCFF685MRG.bam ENCODE3 mm10-minimal archived low read length, mixed read lengths, inconsistent platforms ENCFF887UBK bam bam alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MMU/ 1388027027 ENCODE Processing Pipeline a5bb454b5781e9d3459dbd88598e6674 https://www.encodeproject.org/files/ENCFF887UBK/@@download/ENCFF887UBK.bam released s3://encode-public/2016/04/28/1f61a125-3f9a-42ba-b093-d1fa2cd50f61/ENCFF887UBK.bam ENCODE3 mm10 archived low read length, mixed read lengths, inconsistent platforms ENCFF380YCA bam bam unfiltered alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MMU/ 1913525540 ENCODE Processing Pipeline 88dcf2eceb855bc51d6f25fd121bb415 https://www.encodeproject.org/files/ENCFF380YCA/@@download/ENCFF380YCA.bam released s3://encode-public/2016/07/06/fb37f991-6fc4-422d-99a6-748cfd09b211/ENCFF380YCA.bam ENCODE3 mm10 archived low read length, mixed read lengths, inconsistent platforms ENCFF247GPJ bam bam unfiltered alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 /files/ENCFF309GLL/, /files/ENCFF001MMU/ 1881914464 ENCODE Processing Pipeline a3b85772bcbbd6a71767e0420b6a718b https://www.encodeproject.org/files/ENCFF247GPJ/@@download/ENCFF247GPJ.bam released s3://encode-public/2020/10/12/052c9431-19a4-4d45-89e5-f7c6be2d0ff8/ENCFF247GPJ.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF244TFU bam bam unfiltered alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 41 /files/ENCFF018NEO/, /files/ENCFF001MMW/ 1491188157 ENCODE Processing Pipeline 942fb1ab7d94c024710696ea02b426c7 https://www.encodeproject.org/files/ENCFF244TFU/@@download/ENCFF244TFU.bam released s3://encode-public/2016/11/28/f5c3e2d5-b4ca-4140-96a3-16ddba77e446/ENCFF244TFU.bam ENCODE3 mm10 archived low read length, mixed read lengths, inconsistent platforms ENCFF381DCK bam bam alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 41 /files/ENCFF018NEO/, /files/ENCFF001MMW/ 1108781777 ENCODE Processing Pipeline 2f4460f04253419084c1b1bed196f989 https://www.encodeproject.org/files/ENCFF381DCK/@@download/ENCFF381DCK.bam released s3://encode-public/2016/11/28/9de9be81-4f55-4ba9-ae3b-346c5a580264/ENCFF381DCK.bam ENCODE3 mm10 archived low read length, mixed read lengths, inconsistent platforms ENCFF887HYN bam bam unfiltered alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 41 /files/ENCFF001MMW/, /files/ENCFF309GLL/ 1468596892 ENCODE Processing Pipeline fc14384c052a5d545e2a807b6a5569d8 https://www.encodeproject.org/files/ENCFF887HYN/@@download/ENCFF887HYN.bam released s3://encode-public/2020/10/12/2f043864-41e1-4f8d-9fe3-83bd3c9ef80b/ENCFF887HYN.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF803RZC bam bam alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 41 /files/ENCFF309GLL/, /files/ENCFF001MMU/ 1414890924 ENCODE Processing Pipeline 38db8e1df44fde21b7d42231860fd69f https://www.encodeproject.org/files/ENCFF803RZC/@@download/ENCFF803RZC.bam released s3://encode-public/2020/10/12/4e4e6739-0980-4bcb-8c5c-6a3d785cc7eb/ENCFF803RZC.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF519WFP bam bam alignments mm10 ENCSR000DIK Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000765 erythroblast primary cell Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 41 /files/ENCFF001MMW/, /files/ENCFF309GLL/ 1144453560 ENCODE Processing Pipeline 24b42f7a143230f3bcef0b2e41db5e79 https://www.encodeproject.org/files/ENCFF519WFP/@@download/ENCFF519WFP.bam released s3://encode-public/2020/10/12/bf3d169c-6ae3-4d5a-add5-f44e1dd01a16/ENCFF519WFP.bam ENCODE4 v1.5.1 mm10 released low read length, mixed read lengths, inconsistent platforms ENCFF001GVS bam bam alignments hg19 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GWE/ 691827344 John Stamatoyannopoulos, UW 78344e37ca386f993eea9a4705db5d8a https://www.encodeproject.org/files/ENCFF001GVS/@@download/ENCFF001GVS.bam archived s3://encode-public/2011/06/25/076077da-4cdc-4437-ac0e-4dcfac52815a/ENCFF001GVS.bam Lab custom hg19 archived low read depth, low read length ENCFF001GVV bigWig bigWig raw signal hg19 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001GVS/ 157982308 John Stamatoyannopoulos, UW 14eaea24d3e62bfa394ef44519dd6068 https://www.encodeproject.org/files/ENCFF001GVV/@@download/ENCFF001GVV.bigWig archived s3://encode-public/2011/06/25/5b91be11-cae7-40e7-8da6-dcf483f21c8e/ENCFF001GVV.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001GWE fastq fastq reads ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 717935741 John Stamatoyannopoulos, UW a230574b8322d859e9b1341d134c6217 https://www.encodeproject.org/files/ENCFF001GWE/@@download/ENCFF001GWE.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/bf86c157-d16e-40df-8733-f9087190b3ae/ENCFF001GWE.fastq.gz low read depth, low read length ENCFF436BUU bam bam unfiltered alignments GRCh38 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GWE/ 877170555 ENCODE Processing Pipeline 1f9a75e31784a8809e9f5b0f06cfe2ec https://www.encodeproject.org/files/ENCFF436BUU/@@download/ENCFF436BUU.bam released s3://encode-public/2016/08/09/9a964fe2-31dc-4fb9-b1a5-185542ccddd4/ENCFF436BUU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF596HJP bam bam alignments GRCh38 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GWE/ 627650403 ENCODE Processing Pipeline 1462dab4b17b74b1e3cdaa892f0b4a55 https://www.encodeproject.org/files/ENCFF596HJP/@@download/ENCFF596HJP.bam released s3://encode-public/2016/08/09/52a24624-c20c-4c2f-866d-b3abcf37b19d/ENCFF596HJP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF956TQZ bam bam unfiltered alignments hg19 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GWE/ 872971717 ENCODE Processing Pipeline e6d891112938d37ebba1d516fa20ad58 https://www.encodeproject.org/files/ENCFF956TQZ/@@download/ENCFF956TQZ.bam released s3://encode-public/2016/11/13/ff7b6619-a3d7-49c6-a8fd-60ba6c764a2a/ENCFF956TQZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF251TYG bam bam alignments hg19 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GWE/ 627745864 ENCODE Processing Pipeline f15da9e84871746aa7901fd19cd4c7a8 https://www.encodeproject.org/files/ENCFF251TYG/@@download/ENCFF251TYG.bam released s3://encode-public/2016/11/13/3d45113b-200c-4a6e-b98a-2d2384502f04/ENCFF251TYG.bam ENCODE3 hg19 archived low read depth, low read length ENCFF864YCN bam bam unfiltered alignments GRCh38 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GWE/ 855389096 ENCODE Processing Pipeline a7c77a845adfaf29d465a38703904529 https://www.encodeproject.org/files/ENCFF864YCN/@@download/ENCFF864YCN.bam released s3://encode-public/2020/09/03/cdd71ee6-710f-415e-852b-5bbb4b61dcbb/ENCFF864YCN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF179MPD bam bam alignments GRCh38 ENCSR000DPE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GWE/ 682829689 ENCODE Processing Pipeline 8df8b89f59f104a0789893c0c19d9364 https://www.encodeproject.org/files/ENCFF179MPD/@@download/ENCFF179MPD.bam released s3://encode-public/2020/09/03/ee211de1-e94a-4515-a0a1-3663be20c33a/ENCFF179MPD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF142OTX fastq fastq reads ENCSR973ZVP Control ChIP-seq /worm-donors/ENCDO489HLD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183539/'], '@type': ['Target', 'Item'], 'name': 'ref-2-celegans', 'label': 'ref-2', '@id': '/targets/ref-2-celegans/', 'title': 'ref-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b1eb510-65d4-4542-ac8d-477293830a96', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 236477583 Kevin White, UChicago 29f32d1198f0355e00c7a0fd2106310b https://www.encodeproject.org/files/ENCFF142OTX/@@download/ENCFF142OTX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/287327bc-7753-43e3-ba8d-2ce9cfc8234d/ENCFF142OTX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF927TIG bam bam alignments ce10 ENCSR973ZVP Control ChIP-seq /worm-donors/ENCDO489HLD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183539/'], '@type': ['Target', 'Item'], 'name': 'ref-2-celegans', 'label': 'ref-2', '@id': '/targets/ref-2-celegans/', 'title': 'ref-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b1eb510-65d4-4542-ac8d-477293830a96', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF142OTX/ 338138956 Kevin White, UChicago 0f9b5b309b2e9538e8e6676ead0197d7 https://www.encodeproject.org/files/ENCFF927TIG/@@download/ENCFF927TIG.bam released s3://encode-public/2015/08/07/b57b3011-a6de-4b27-8fbc-604a8fca6f0d/ENCFF927TIG.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF244IXA bigWig bigWig signal of unique reads ce10 ENCSR973ZVP Control ChIP-seq /worm-donors/ENCDO489HLD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183539/'], '@type': ['Target', 'Item'], 'name': 'ref-2-celegans', 'label': 'ref-2', '@id': '/targets/ref-2-celegans/', 'title': 'ref-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b1eb510-65d4-4542-ac8d-477293830a96', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF927TIG/ 10028283 Kevin White, UChicago 3d9a28f5833eefddda66d5894c3a0c0c https://www.encodeproject.org/files/ENCFF244IXA/@@download/ENCFF244IXA.bigWig released s3://encode-public/2015/10/02/598bb760-2d45-42e7-92c8-fc23d1f2cbfc/ENCFF244IXA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF032GNI bigWig bigWig read-depth normalized signal ce10 ENCSR973ZVP Control ChIP-seq /worm-donors/ENCDO489HLD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183539/'], '@type': ['Target', 'Item'], 'name': 'ref-2-celegans', 'label': 'ref-2', '@id': '/targets/ref-2-celegans/', 'title': 'ref-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b1eb510-65d4-4542-ac8d-477293830a96', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF927TIG/ 10046527 Kevin White, UChicago da1f2b2da9237840229fa9080e83e9fc https://www.encodeproject.org/files/ENCFF032GNI/@@download/ENCFF032GNI.bigWig released s3://encode-public/2015/10/02/a5fc43b7-592b-4fd0-af17-1831d04054d6/ENCFF032GNI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF361DTE bam bam alignments ce11 ENCSR973ZVP Control ChIP-seq /worm-donors/ENCDO489HLD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183539/'], '@type': ['Target', 'Item'], 'name': 'ref-2-celegans', 'label': 'ref-2', '@id': '/targets/ref-2-celegans/', 'title': 'ref-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b1eb510-65d4-4542-ac8d-477293830a96', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF142OTX/ 338474431 Kevin White, UChicago 49ad4c8e0f1820abbc4cc806d387ab9c https://www.encodeproject.org/files/ENCFF361DTE/@@download/ENCFF361DTE.bam released s3://encode-public/2016/01/19/e33ee7f6-085b-4826-8415-1dca55867128/ENCFF361DTE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF958JQK bigWig bigWig signal of unique reads ce11 ENCSR973ZVP Control ChIP-seq /worm-donors/ENCDO489HLD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183539/'], '@type': ['Target', 'Item'], 'name': 'ref-2-celegans', 'label': 'ref-2', '@id': '/targets/ref-2-celegans/', 'title': 'ref-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b1eb510-65d4-4542-ac8d-477293830a96', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF361DTE/ 10020541 Kevin White, UChicago 00d52364503c5db36230d839080a3c54 https://www.encodeproject.org/files/ENCFF958JQK/@@download/ENCFF958JQK.bigWig released s3://encode-public/2016/02/03/f3d4b994-880a-4f16-b959-1b034293a825/ENCFF958JQK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF202QPE bigWig bigWig read-depth normalized signal ce11 ENCSR973ZVP Control ChIP-seq /worm-donors/ENCDO489HLD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183539/'], '@type': ['Target', 'Item'], 'name': 'ref-2-celegans', 'label': 'ref-2', '@id': '/targets/ref-2-celegans/', 'title': 'ref-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b1eb510-65d4-4542-ac8d-477293830a96', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF361DTE/ 10044065 Kevin White, UChicago fee029b94429edd13ac034d67c45bf60 https://www.encodeproject.org/files/ENCFF202QPE/@@download/ENCFF202QPE.bigWig released s3://encode-public/2016/02/03/4b04338e-0687-42e1-9893-29b231066088/ENCFF202QPE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF001KST bam bam alignments mm9 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KTC/ 249359896 Bing Ren, UCSD f231ffb8c9dc1ec2e222bb93041097ed https://www.encodeproject.org/files/ENCFF001KST/@@download/ENCFF001KST.bam archived s3://encode-public/2011/12/23/feb79799-f12a-402d-882f-0e948d31d1dd/ENCFF001KST.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF001KSV bam bam alignments mm9 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KTF/ 424037117 Bing Ren, UCSD 42edbb82dc96a37ef2571d24767d1958 https://www.encodeproject.org/files/ENCFF001KSV/@@download/ENCFF001KSV.bam archived s3://encode-public/2011/12/23/42bbd6f9-c81b-4921-9aa6-fb109c97191d/ENCFF001KSV.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF001KSW bigWig bigWig signal mm9 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KSV/, /files/ENCFF001KST/ 75849942 Bing Ren, UCSD 0ceca399c1aaf77cb69661bf34df4d69 https://www.encodeproject.org/files/ENCFF001KSW/@@download/ENCFF001KSW.bigWig archived s3://encode-public/2011/12/23/61ea2f1b-97da-4504-b07d-887260237b5a/ENCFF001KSW.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF001KTC fastq fastq reads ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 single-ended 493100371 Bing Ren, UCSD 176f8640b25410359ff87dda00cac4ab https://www.encodeproject.org/files/ENCFF001KTC/@@download/ENCFF001KTC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/bc1310d3-33e2-40df-8bf3-342ab9fed269/ENCFF001KTC.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF001KTF fastq fastq reads ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 single-ended 649686565 Bing Ren, UCSD b0fbce764a723e7190b7a09952f1d469 https://www.encodeproject.org/files/ENCFF001KTF/@@download/ENCFF001KTF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/1b814709-78a5-405e-a4db-c88dce577281/ENCFF001KTF.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF815IVY bam bam unfiltered alignments mm10-minimal ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KTC/, /files/ENCFF516HDY/ 502146549 J. Michael Cherry, Stanford 75ab25d91f9ac3157bde2171b5f1a791 https://www.encodeproject.org/files/ENCFF815IVY/@@download/ENCFF815IVY.bam archived s3://encode-public/2015/02/04/96fbb0a1-fc90-493e-8b91-c4d46026bce5/ENCFF815IVY.bam ENCODE3 mm10-minimal archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF799XBR bam bam unfiltered alignments mm10-minimal ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KTF/, /files/ENCFF516HDY/ 732258908 J. Michael Cherry, Stanford 6f2d4722e5518f9fe431a36421023a2f https://www.encodeproject.org/files/ENCFF799XBR/@@download/ENCFF799XBR.bam archived s3://encode-public/2015/02/04/c62639e0-c64a-4625-84b3-27fcf5a0be54/ENCFF799XBR.bam ENCODE3 mm10-minimal archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF866LQQ bam bam unfiltered alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KTF/ 733745633 ENCODE Processing Pipeline b543a773138090a8cd0e4d3efc38856a https://www.encodeproject.org/files/ENCFF866LQQ/@@download/ENCFF866LQQ.bam released s3://encode-public/2016/07/06/c9d3312f-7b83-4800-8c44-e36dfe2c101e/ENCFF866LQQ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF166ROS bam bam unfiltered alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KTC/, /files/ENCFF018NEO/ 503024233 ENCODE Processing Pipeline 693eb6e4d12e61dba4334799bc395f3a https://www.encodeproject.org/files/ENCFF166ROS/@@download/ENCFF166ROS.bam released s3://encode-public/2016/07/06/b7c49e70-4537-4c9e-b0a2-7b3697c91e81/ENCFF166ROS.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF914TSC bam bam alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KTF/ 437264371 ENCODE Processing Pipeline 6f8e87a3cdf85c521c37cc2cf84c9ce6 https://www.encodeproject.org/files/ENCFF914TSC/@@download/ENCFF914TSC.bam released s3://encode-public/2016/04/28/2fbba032-eea3-46bf-8ace-b3f4773a36d7/ENCFF914TSC.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF674KWP bam bam alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KTC/, /files/ENCFF018NEO/ 189143845 ENCODE Processing Pipeline 80adad1918db1859dfc15cabda2d598a https://www.encodeproject.org/files/ENCFF674KWP/@@download/ENCFF674KWP.bam released s3://encode-public/2016/04/28/64a96ed4-5728-4882-a779-a5dce0571daa/ENCFF674KWP.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF434YGN bam bam unfiltered alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KTF/, /files/ENCFF309GLL/ 719969499 ENCODE Processing Pipeline 51903847e436d815b8cda1513e2f3901 https://www.encodeproject.org/files/ENCFF434YGN/@@download/ENCFF434YGN.bam released s3://encode-public/2020/10/12/8216c3f5-a9bd-4a55-9dce-9b32d712323f/ENCFF434YGN.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF650JDX bam bam unfiltered alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KTC/ 497545354 ENCODE Processing Pipeline f53211292d24494c6721be582bfa0acf https://www.encodeproject.org/files/ENCFF650JDX/@@download/ENCFF650JDX.bam released s3://encode-public/2020/10/12/edc75727-0448-46b4-b33b-f5767770a8c0/ENCFF650JDX.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF801CMH bam bam alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KTC/ 201706838 ENCODE Processing Pipeline f4499f3cc5c53e07f3add1dc2086833b https://www.encodeproject.org/files/ENCFF801CMH/@@download/ENCFF801CMH.bam released s3://encode-public/2020/10/12/9eff5d6e-f79e-4ad1-941c-2f5a8b7d7483/ENCFF801CMH.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF912GXP bam bam alignments mm10 ENCSR000CDR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001987 placenta tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KTF/, /files/ENCFF309GLL/ 469347632 ENCODE Processing Pipeline 85119d175e71e6e57e1f1c068768880f https://www.encodeproject.org/files/ENCFF912GXP/@@download/ENCFF912GXP.bam released s3://encode-public/2020/10/12/a1655c96-0120-420e-9e65-b7723f210e7d/ENCFF912GXP.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length extremely low read depth ENCFF001NUG bam bam alignments mm9 ENCSR000EUD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 27 /files/ENCFF001NVE/ 666043707 Michael Snyder, Stanford 49ac3e23b160d34d59e165d09df48294 https://www.encodeproject.org/files/ENCFF001NUG/@@download/ENCFF001NUG.bam archived s3://encode-public/2012/08/01/7a033144-d480-4910-aba9-3d6a37682064/ENCFF001NUG.bam Lab custom mm9 archived mild to moderate bottlenecking, low read length ENCFF001NUH bigWig bigWig signal mm9 ENCSR000EUD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 /files/ENCFF001NUG/ 276828519 Michael Snyder, Stanford d0f8887e973ace51f0862a33cc30be6d https://www.encodeproject.org/files/ENCFF001NUH/@@download/ENCFF001NUH.bigWig archived s3://encode-public/2012/08/01/fd11216d-a269-4660-a7cc-b589894f5c22/ENCFF001NUH.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read length ENCFF001NVE fastq fastq reads ENCSR000EUD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 single-ended 1908225166 Michael Snyder, Stanford ac546abf96fdabb373243613ab713aa6 https://www.encodeproject.org/files/ENCFF001NVE/@@download/ENCFF001NVE.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/bc023c83-6acf-43e6-a5b5-09f57d4474f2/ENCFF001NVE.fastq.gz mild to moderate bottlenecking, low read length ENCFF483UNM bam bam unfiltered alignments mm10 ENCSR000EUD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NVE/ 2198588829 ENCODE Processing Pipeline 8fece57fba94b2b27573587f3e51e97a https://www.encodeproject.org/files/ENCFF483UNM/@@download/ENCFF483UNM.bam released s3://encode-public/2016/10/26/28434e58-1dab-4955-bb55-c0881ed2139d/ENCFF483UNM.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length ENCFF757ZBC bam bam alignments mm10 ENCSR000EUD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NVE/ 1203328275 ENCODE Processing Pipeline ffc393c8c7b8c36b4a0655e52b09d01b https://www.encodeproject.org/files/ENCFF757ZBC/@@download/ENCFF757ZBC.bam released s3://encode-public/2016/10/26/22879174-1e1a-4607-ab82-25555d45bfe8/ENCFF757ZBC.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length ENCFF958ABY bam bam unfiltered alignments mm10 ENCSR000EUD Control ChIP-seq /mouse-donors/ENCDO073AAA/ 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/files/ENCFF001JYN/, /files/ENCFF806TVZ/ 826189598 J. 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s3://encode-public/2015/08/07/84094b91-8ebb-4532-9ee7-77e9de41c387/ENCFF766GQY.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF802JJU bigWig bigWig read-depth normalized signal ce10 ENCSR739RAY Control ChIP-seq /worm-donors/ENCDO821TDF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175535/'], '@type': ['Target', 'Item'], 'name': 'hrde-1-celegans', 'label': 'hrde-1', '@id': '/targets/hrde-1-celegans/', 'title': 'hrde-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'b966d9e8-af1a-4627-b704-5c3abcb7f814', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF766GQY/ 9955130 Kevin White, UChicago ee327f1d504c3163deff0b00fd2cd403 https://www.encodeproject.org/files/ENCFF802JJU/@@download/ENCFF802JJU.bigWig released s3://encode-public/2015/10/02/6888362b-16dd-4de7-a600-bc7a9d1ba8d5/ENCFF802JJU.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF148VHR bigWig bigWig signal of unique reads ce10 ENCSR739RAY Control ChIP-seq /worm-donors/ENCDO821TDF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175535/'], '@type': ['Target', 'Item'], 'name': 'hrde-1-celegans', 'label': 'hrde-1', '@id': '/targets/hrde-1-celegans/', 'title': 'hrde-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'b966d9e8-af1a-4627-b704-5c3abcb7f814', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF766GQY/ 9954631 Kevin White, UChicago d5442c53f9da32da6e20b6a60cd68baa https://www.encodeproject.org/files/ENCFF148VHR/@@download/ENCFF148VHR.bigWig released s3://encode-public/2015/10/02/405a0cbb-5ffa-47d9-b3fd-10df1f84ccd9/ENCFF148VHR.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF664MNX bam bam alignments ce11 ENCSR739RAY Control ChIP-seq /worm-donors/ENCDO821TDF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175535/'], '@type': ['Target', 'Item'], 'name': 'hrde-1-celegans', 'label': 'hrde-1', '@id': '/targets/hrde-1-celegans/', 'title': 'hrde-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'b966d9e8-af1a-4627-b704-5c3abcb7f814', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF413YLL/ 926513835 Kevin White, UChicago eafb66ebd21c249e145f2dd5e177c7d0 https://www.encodeproject.org/files/ENCFF664MNX/@@download/ENCFF664MNX.bam released s3://encode-public/2016/01/20/1e71caa9-6e6e-4aee-8c48-11e8f8a70446/ENCFF664MNX.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF065VRM bigWig bigWig signal of unique reads ce11 ENCSR739RAY Control ChIP-seq /worm-donors/ENCDO821TDF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175535/'], '@type': ['Target', 'Item'], 'name': 'hrde-1-celegans', 'label': 'hrde-1', '@id': '/targets/hrde-1-celegans/', 'title': 'hrde-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'b966d9e8-af1a-4627-b704-5c3abcb7f814', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF664MNX/ 9952776 Kevin White, UChicago c7e5e247638b13d0370b5450f51d0a6f https://www.encodeproject.org/files/ENCFF065VRM/@@download/ENCFF065VRM.bigWig released s3://encode-public/2016/02/03/7eedb500-3f03-4529-8599-8a523cd50611/ENCFF065VRM.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF301QLN bigWig bigWig read-depth normalized signal ce11 ENCSR739RAY Control ChIP-seq /worm-donors/ENCDO821TDF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175535/'], '@type': ['Target', 'Item'], 'name': 'hrde-1-celegans', 'label': 'hrde-1', '@id': '/targets/hrde-1-celegans/', 'title': 'hrde-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'b966d9e8-af1a-4627-b704-5c3abcb7f814', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF664MNX/ 9951571 Kevin White, UChicago 4498e6639957634a305aedb9961148cc https://www.encodeproject.org/files/ENCFF301QLN/@@download/ENCFF301QLN.bigWig released s3://encode-public/2016/02/03/f1178dac-e2dc-4d66-9158-77c45ca5d7ac/ENCFF301QLN.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF000RQM bam bam alignments hg19 ENCSR000DLC Control ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 35 1450721012 Vishwanath Iyer, UTA 0f536a739c7b3910c543f1b2871eb79e https://www.encodeproject.org/files/ENCFF000RQM/@@download/ENCFF000RQM.bam archived s3://encode-public/2012/07/26/679250eb-38cb-467e-a0af-7c63694a7fd9/ENCFF000RQM.bam Lab custom hg19 archived low read depth ENCFF000RQO bigWig bigWig signal hg19 ENCSR000DLC Control ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 4977450814 Vishwanath Iyer, UTA 25dffdfcc95cefff7b67daea6c42b4cf https://www.encodeproject.org/files/ENCFF000RQO/@@download/ENCFF000RQO.bigWig archived s3://encode-public/2012/07/26/7fb48d65-d3d8-4e01-aea9-8251db75ddca/ENCFF000RQO.bigWig Lab custom hg19 archived low read depth ENCFF000RRV fastq fastq reads ENCSR000DLC Control ChIP-seq /human-donors/ENCDO000ACD/ EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 1645416386 Vishwanath Iyer, UTA a4583503f0153241cd91412921e25681 https://www.encodeproject.org/files/ENCFF000RRV/@@download/ENCFF000RRV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/4ee5292c-9ad6-47d4-a702-c537df441bb2/ENCFF000RRV.fastq.gz low read depth ENCFF362CKA bam bam unfiltered alignments GRCh38 ENCSR000DLC Control ChIP-seq /human-donors/ENCDO000ACD/ EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RRV/ 1931171361 ENCODE Processing Pipeline 9742b1c20ee850573a2fbdc21cce7f9b https://www.encodeproject.org/files/ENCFF362CKA/@@download/ENCFF362CKA.bam released s3://encode-public/2018/02/22/263d3f4b-dbe7-4c57-8fde-d22cc6c9e2af/ENCFF362CKA.bam ENCODE3 GRCh38 archived low read depth ENCFF353CVX bam bam alignments GRCh38 ENCSR000DLC Control ChIP-seq /human-donors/ENCDO000ACD/ EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RRV/ 863508228 ENCODE Processing Pipeline 5e4b528c39fc4aef44c60ab15e3071e1 https://www.encodeproject.org/files/ENCFF353CVX/@@download/ENCFF353CVX.bam released s3://encode-public/2017/04/11/0cc2ac2d-f527-4716-875e-679c31ef9e66/ENCFF353CVX.bam ENCODE3 GRCh38 archived low read depth ENCFF595UIL bam bam unfiltered alignments hg19 ENCSR000DLC Control ChIP-seq /human-donors/ENCDO000ACD/ EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RRV/ 1925878420 ENCODE Processing Pipeline 41f3e6d55a6506a1f35cf71066e43ba5 https://www.encodeproject.org/files/ENCFF595UIL/@@download/ENCFF595UIL.bam released s3://encode-public/2017/07/04/27fdb55a-3a34-4530-a889-36a4e30149c3/ENCFF595UIL.bam ENCODE3 hg19 archived low read depth ENCFF085RVS bam bam alignments hg19 ENCSR000DLC Control ChIP-seq /human-donors/ENCDO000ACD/ EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RRV/ 860413895 ENCODE Processing Pipeline ff4a880ea52bfc0261f71da5c05ec6da https://www.encodeproject.org/files/ENCFF085RVS/@@download/ENCFF085RVS.bam released s3://encode-public/2017/07/04/f3c55ae3-d462-46d4-aaef-4b0d6b010ed5/ENCFF085RVS.bam ENCODE3 hg19 archived low read depth ENCFF882ROJ bam bam unfiltered alignments GRCh38 ENCSR000DLC Control ChIP-seq /human-donors/ENCDO000ACD/ EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RRV/, /files/ENCFF110MCL/ 1970194119 ENCODE Processing Pipeline 3e66c272491e1074850a3e977532ed89 https://www.encodeproject.org/files/ENCFF882ROJ/@@download/ENCFF882ROJ.bam released s3://encode-public/2020/09/03/667d1ada-0f76-4cbd-bfc0-924055d1cd5f/ENCFF882ROJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF387MLU bam bam alignments GRCh38 ENCSR000DLC Control ChIP-seq /human-donors/ENCDO000ACD/ EFO:0005346 GM13977 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RRV/, /files/ENCFF110MCL/ 802916426 ENCODE Processing Pipeline 2a7790c51e4a7003afdb5fd136d6059f https://www.encodeproject.org/files/ENCFF387MLU/@@download/ENCFF387MLU.bam released s3://encode-public/2020/09/03/9ad916c9-7b9e-468f-b3cd-38dabdfd3e8e/ENCFF387MLU.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF001KVP bam bam alignments mm9 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KVR/ 821729717 Bing Ren, UCSD 105e46459ce0e640f8fdbdb40aa2ac50 https://www.encodeproject.org/files/ENCFF001KVP/@@download/ENCFF001KVP.bam archived s3://encode-public/2011/12/23/da25512c-14c2-437f-af0b-eb96862b9df2/ENCFF001KVP.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF001KVQ bam bam alignments mm9 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001KWE/ 959339811 Bing Ren, UCSD 45fca209125f846fa60caefffb07d448 https://www.encodeproject.org/files/ENCFF001KVQ/@@download/ENCFF001KVQ.bam archived s3://encode-public/2011/12/23/bd260dd0-84ec-4c72-a317-a2c998f62b56/ENCFF001KVQ.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF001KVR fastq fastq reads ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 single-ended 886019922 Bing Ren, UCSD e0f271084fed9038c1f5c224e2857985 https://www.encodeproject.org/files/ENCFF001KVR/@@download/ENCFF001KVR.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/252659ff-d2f4-4db0-a8a6-19b664ec1d1f/ENCFF001KVR.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF001KVU bigWig bigWig signal mm9 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KVQ/, /files/ENCFF001KVP/ 76591243 Bing Ren, UCSD 9380ce48fa05cce34c4126c6b82b5b7c https://www.encodeproject.org/files/ENCFF001KVU/@@download/ENCFF001KVU.bigWig archived s3://encode-public/2011/12/23/adea497e-c29c-43c0-854f-ae22857684c3/ENCFF001KVU.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF001KWE fastq fastq reads ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 30 single-ended 920088653 Bing Ren, UCSD e230080184bc232569ae1db500dd4e0f https://www.encodeproject.org/files/ENCFF001KWE/@@download/ENCFF001KWE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/c4a69d66-59d6-4f79-b0a8-1490703afb3c/ENCFF001KWE.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF799VCF bam bam unfiltered alignments mm10-minimal ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001KWE/, /files/ENCFF806TVZ/ 1054584682 J. Michael Cherry, Stanford 0d829e5c758f622a31eeba3353c95169 https://www.encodeproject.org/files/ENCFF799VCF/@@download/ENCFF799VCF.bam archived s3://encode-public/2015/02/04/9e4bbefb-826e-46cf-bc32-b1f647b2cb79/ENCFF799VCF.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF686TAK bam bam unfiltered alignments mm10-minimal ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KVR/, /files/ENCFF806TVZ/ 1068896402 J. Michael Cherry, Stanford 8dbb67054b68be0005d6109af1f5bc6b https://www.encodeproject.org/files/ENCFF686TAK/@@download/ENCFF686TAK.bam archived s3://encode-public/2015/02/04/5745d360-30b5-4d90-b948-2237b3605e29/ENCFF686TAK.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF283OEI bam bam unfiltered alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 30 /files/ENCFF018NEO/, /files/ENCFF001KWE/ 1056317538 ENCODE Processing Pipeline 9313125b8955385c2dc81bce50f15fe3 https://www.encodeproject.org/files/ENCFF283OEI/@@download/ENCFF283OEI.bam released s3://encode-public/2016/07/06/d636747a-7870-4479-9e0a-8c3a210a7c27/ENCFF283OEI.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF705BZU bam bam alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 30 /files/ENCFF018NEO/, /files/ENCFF001KWE/ 529876577 ENCODE Processing Pipeline c8d224a0ef4b0d26f81369a58d8cb6b1 https://www.encodeproject.org/files/ENCFF705BZU/@@download/ENCFF705BZU.bam released s3://encode-public/2016/04/28/4a573809-b37e-4dab-b316-dfc79132a125/ENCFF705BZU.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF713QUP bam bam unfiltered alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 30 /files/ENCFF018NEO/, /files/ENCFF001KVR/ 999898685 ENCODE Processing Pipeline b8c067091f1c2760d188d6f6c36f81b9 https://www.encodeproject.org/files/ENCFF713QUP/@@download/ENCFF713QUP.bam released s3://encode-public/2016/12/16/814ae49f-a237-4649-8aa9-9ca76d85f4ef/ENCFF713QUP.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF314OGN bam bam alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 30 /files/ENCFF018NEO/, /files/ENCFF001KVR/ 581800730 ENCODE Processing Pipeline 3fc7a4e52692ef44cd1e5cd0533a5bd9 https://www.encodeproject.org/files/ENCFF314OGN/@@download/ENCFF314OGN.bam released s3://encode-public/2016/12/16/7e16cb8c-d4fb-4449-be6a-a600cb3ca034/ENCFF314OGN.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF241TUY bam bam unfiltered alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001KWE/, /files/ENCFF309GLL/ 1018101519 ENCODE Processing Pipeline 39bc71af694bf99cbaf01a3bd0a2bb7f https://www.encodeproject.org/files/ENCFF241TUY/@@download/ENCFF241TUY.bam released s3://encode-public/2020/10/12/a0e5e581-08b6-4ae3-9a90-8604c546150e/ENCFF241TUY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF095WWZ bam bam unfiltered alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 30 /files/ENCFF001KVR/, /files/ENCFF309GLL/ 959032671 ENCODE Processing Pipeline 083b2702d7895c3ada29233d4f29f146 https://www.encodeproject.org/files/ENCFF095WWZ/@@download/ENCFF095WWZ.bam released s3://encode-public/2020/10/12/51f83a12-e359-4697-9051-2d6e2faaabf2/ENCFF095WWZ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF699BJR bam bam alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 30 /files/ENCFF001KVR/, /files/ENCFF309GLL/ 628487764 ENCODE Processing Pipeline ba440d282209e2ad49fd14650a107977 https://www.encodeproject.org/files/ENCFF699BJR/@@download/ENCFF699BJR.bam released s3://encode-public/2020/10/12/aabdbe4b-9b75-454d-919e-c76907b8baa1/ENCFF699BJR.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF470APL bam bam alignments mm10 ENCSR000CBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002106 spleen tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001KWE/, /files/ENCFF309GLL/ 561317068 ENCODE Processing Pipeline d3c8317436b6904a252259445ff9c708 https://www.encodeproject.org/files/ENCFF470APL/@@download/ENCFF470APL.bam released s3://encode-public/2020/10/12/52215f5f-cfbe-4015-89c0-ae31f47a1502/ENCFF470APL.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length ENCFF001HAN bam bam alignments hg19 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAY/ 1003500959 John Stamatoyannopoulos, UW c0bfafd13b7c89847334e7f0434a40e0 https://www.encodeproject.org/files/ENCFF001HAN/@@download/ENCFF001HAN.bam archived s3://encode-public/2011/06/25/d4956a7a-d0ae-42f7-8052-f9f515747951/ENCFF001HAN.bam Lab custom hg19 archived low read length ENCFF001HAO bigWig bigWig raw signal hg19 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 /files/ENCFF001HAN/ 202648846 John Stamatoyannopoulos, UW 9a985235a976c5851aff3396d0b62a9b https://www.encodeproject.org/files/ENCFF001HAO/@@download/ENCFF001HAO.bigWig archived s3://encode-public/2011/06/25/40165316-8021-425f-882d-7b0518971b72/ENCFF001HAO.bigWig Lab custom hg19 archived low read length ENCFF001HAY fastq fastq reads ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 single-ended 1043126158 John Stamatoyannopoulos, UW 9b347753e5eb9c139014e48dcae42604 https://www.encodeproject.org/files/ENCFF001HAY/@@download/ENCFF001HAY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/b526ce23-e10b-4a4f-869f-64d77b7278ca/ENCFF001HAY.fastq.gz low read length ENCFF024LIF bam bam unfiltered alignments GRCh38 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HAY/ 1270587985 ENCODE Processing Pipeline 9253dc6df788db4cbee78f8cf5dbedd3 https://www.encodeproject.org/files/ENCFF024LIF/@@download/ENCFF024LIF.bam released s3://encode-public/2016/08/09/fdf1048b-25f7-4741-89a8-f0bc6788b386/ENCFF024LIF.bam ENCODE3 GRCh38 archived low read length ENCFF390WET bam bam alignments GRCh38 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HAY/ 935946826 ENCODE Processing Pipeline 12bc4e3b04065b855ecb13aff9d7d876 https://www.encodeproject.org/files/ENCFF390WET/@@download/ENCFF390WET.bam released s3://encode-public/2016/08/09/fe799ab6-6c15-46b1-8a86-3773203675d0/ENCFF390WET.bam ENCODE3 GRCh38 archived low read length ENCFF449OJH bam bam unfiltered alignments hg19 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HAY/ 1263428274 ENCODE Processing Pipeline bcd1532461854f64ae2628b1b22b2f03 https://www.encodeproject.org/files/ENCFF449OJH/@@download/ENCFF449OJH.bam released s3://encode-public/2016/11/13/e084d9b3-e1f0-4ec3-89ab-ba8708982485/ENCFF449OJH.bam ENCODE3 hg19 archived low read length ENCFF211ZXO bam bam alignments hg19 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HAY/ 936244818 ENCODE Processing Pipeline 9bbd975c910c61d94ea7a86bdc10de98 https://www.encodeproject.org/files/ENCFF211ZXO/@@download/ENCFF211ZXO.bam released s3://encode-public/2016/11/13/7dc60bbb-c761-476a-8cef-5568c4cd075b/ENCFF211ZXO.bam ENCODE3 hg19 archived low read length ENCFF487OPO bam bam unfiltered alignments GRCh38 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAY/ 1239395615 ENCODE Processing Pipeline ee021e004266a715eb45f52d37af0f53 https://www.encodeproject.org/files/ENCFF487OPO/@@download/ENCFF487OPO.bam released s3://encode-public/2020/09/03/4387e862-e46d-41b5-8001-f35d176f5fc1/ENCFF487OPO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF539HRS bam bam alignments GRCh38 ENCSR000DQQ Control ChIP-seq /human-donors/ENCDO115AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAY/ 1017330375 ENCODE Processing Pipeline 07b1fea69af1246f53722d1d643db88b https://www.encodeproject.org/files/ENCFF539HRS/@@download/ENCFF539HRS.bam released s3://encode-public/2020/09/03/db48477e-92b7-4ad8-ac58-97e8ed6e6fbb/ENCFF539HRS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001MVZ bam bam alignments mm9 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF001MWB/ 657611441 Ross Hardison, PennState 793fcd334f2f550ff3e708cf73b0378a https://www.encodeproject.org/files/ENCFF001MVZ/@@download/ENCFF001MVZ.bam archived s3://encode-public/2011/11/05/11886609-544e-42ab-9dad-1daf9208b325/ENCFF001MVZ.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MWA bam bam alignments mm9 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF001MWM/ 6592274471 Ross Hardison, PennState fcec7eef6d8170bd6f87c4b3db28b565 https://www.encodeproject.org/files/ENCFF001MWA/@@download/ENCFF001MWA.bam archived s3://encode-public/2011/11/05/da6917ab-324a-4007-a007-5d52bb686b81/ENCFF001MWA.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MWB fastq fastq reads ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 36 single-ended 553803104 Ross Hardison, PennState eb11a3bed9bd0a27335511756b1f0ae4 https://www.encodeproject.org/files/ENCFF001MWB/@@download/ENCFF001MWB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2011/11/05/27a8db3c-979f-4611-9982-5c6a3cf9bce3/ENCFF001MWB.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MWC bigWig bigWig signal mm9 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 1036623236 Ross Hardison, PennState b0e6e13af5f44865c3e2dcbf59800d53 https://www.encodeproject.org/files/ENCFF001MWC/@@download/ENCFF001MWC.bigWig archived s3://encode-public/2011/11/05/4c8f29a1-b167-44bc-9c72-d4f897c14ea6/ENCFF001MWC.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MWD bigWig bigWig signal mm9 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 5500082782 Ross Hardison, PennState 8b87fe200d2f725e150180c71ca8d091 https://www.encodeproject.org/files/ENCFF001MWD/@@download/ENCFF001MWD.bigWig archived s3://encode-public/2011/11/05/68191227-41d2-4910-a4ad-06a11b695070/ENCFF001MWD.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MWE bigWig bigWig signal mm9 ENCSR000DIO Control ChIP-seq EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 5656886852 Ross Hardison, PennState a920b3ea13270fb08a1ac15e1c1afab0 https://www.encodeproject.org/files/ENCFF001MWE/@@download/ENCFF001MWE.bigWig archived s3://encode-public/2011/11/05/b8f8c1d5-eb39-4709-b58e-b26061573bc0/ENCFF001MWE.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MWM fastq fastq reads ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 55 single-ended 5579742041 Ross Hardison, PennState 0b903105a848c33fc360eb2efca81eaf https://www.encodeproject.org/files/ENCFF001MWM/@@download/ENCFF001MWM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/f03d5321-e1d9-4a80-839a-767e3a254d0e/ENCFF001MWM.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF697IJQ bam bam unfiltered alignments mm10-minimal ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF001MWM/, /files/ENCFF806TVZ/ 6795953133 J. Michael Cherry, Stanford 468f7b5db8c9dd5717c71b9038c2fbf7 https://www.encodeproject.org/files/ENCFF697IJQ/@@download/ENCFF697IJQ.bam archived s3://encode-public/2015/02/09/a47dcd9f-93dc-4a6f-a979-68b3b68afa9b/ENCFF697IJQ.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF929RCI bam bam unfiltered alignments mm10-minimal ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF001MWB/, /files/ENCFF806TVZ/ 694345090 J. Michael Cherry, Stanford a23c546b32f545b84c95c7f4c2ccf115 https://www.encodeproject.org/files/ENCFF929RCI/@@download/ENCFF929RCI.bam archived s3://encode-public/2015/02/09/52e1bbf8-d762-40fc-ad72-5fc4f6c60e38/ENCFF929RCI.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF868VCJ bam bam unfiltered alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF001MWB/, /files/ENCFF309GLL/ 677569574 ENCODE Processing Pipeline 3bae28da7249461875f082beb22d3b0e https://www.encodeproject.org/files/ENCFF868VCJ/@@download/ENCFF868VCJ.bam released s3://encode-public/2020/10/12/1d814f48-fa2d-456f-a382-54289f0f3bea/ENCFF868VCJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF522XPD bam bam unfiltered alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MWB/ 695036067 ENCODE Processing Pipeline a4b3f97209a17fb0783eeacfb09ca500 https://www.encodeproject.org/files/ENCFF522XPD/@@download/ENCFF522XPD.bam released s3://encode-public/2016/10/26/f79ed131-30dc-471f-b6c6-98eb440961cd/ENCFF522XPD.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF339MRB bam bam alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MWB/ 495432195 ENCODE Processing Pipeline 5088db2c1fdb124df1e7112a2144abe7 https://www.encodeproject.org/files/ENCFF339MRB/@@download/ENCFF339MRB.bam released s3://encode-public/2016/10/26/362ea2a9-b43c-4563-9563-7dea351056e8/ENCFF339MRB.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF522JXN bam bam unfiltered alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MWM/ 5400011509 ENCODE Processing Pipeline d1d47fe55ddef775c598ea2acd10a8d0 https://www.encodeproject.org/files/ENCFF522JXN/@@download/ENCFF522JXN.bam released s3://encode-public/2016/11/29/02984570-5768-4624-8d2f-2e4c50d43f3c/ENCFF522JXN.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF484XJK bam bam alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MWM/ 3747967475 ENCODE Processing Pipeline fddfe5d8f96792c3b98b221f48d490ff https://www.encodeproject.org/files/ENCFF484XJK/@@download/ENCFF484XJK.bam released s3://encode-public/2016/11/29/73244f58-a1e7-4d00-addb-e144c1074fbe/ENCFF484XJK.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF058AOY bam bam unfiltered alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF001MWM/, /files/ENCFF309GLL/ 5332237496 ENCODE Processing Pipeline 56b1c3c1fac69a51d676f4f0fb9a7366 https://www.encodeproject.org/files/ENCFF058AOY/@@download/ENCFF058AOY.bam released s3://encode-public/2020/10/12/85185668-fff7-44a9-a9cb-502e75ca6c26/ENCFF058AOY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF601JDD bam bam alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF001MWB/, /files/ENCFF309GLL/ 521743909 ENCODE Processing Pipeline 9e683813fea6ffe9a753f3bf88cffff2 https://www.encodeproject.org/files/ENCFF601JDD/@@download/ENCFF601JDD.bam released s3://encode-public/2020/10/12/cf6c2d72-3b47-44a2-a60b-bf863a2a364e/ENCFF601JDD.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF336KWE bam bam alignments mm10 ENCSR000DIO Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF001MWM/, /files/ENCFF309GLL/ 3983375148 ENCODE Processing Pipeline 93e4048b0b63feca8d01ee76ac82ac7b https://www.encodeproject.org/files/ENCFF336KWE/@@download/ENCFF336KWE.bam released s3://encode-public/2020/10/12/bce776f9-0899-4adc-aebc-ee8410e33558/ENCFF336KWE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF002AQS fastq fastq reads ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2586132073 Bing Ren, UCSD b38195163d08da738999cd74dd5a24ba SRA:SRR3651885 https://www.encodeproject.org/files/ENCFF002AQS/@@download/ENCFF002AQS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/582c17fe-0425-48b0-860e-08fa530ecd3a/ENCFF002AQS.fastq.gz ENCFF002AQU fastq fastq reads ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2311159673 Bing Ren, UCSD 6baf4553aac55425abf81b5e255e488a SRA:SRR3651884 https://www.encodeproject.org/files/ENCFF002AQU/@@download/ENCFF002AQU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/009e1f3d-803b-491d-9072-ac5af77a703f/ENCFF002AQU.fastq.gz ENCFF642QKT bam bam unfiltered alignments mm10-minimal ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQS/, /files/ENCFF806TVZ/ 2904815244 ENCODE Processing Pipeline 1be47563dc7b81efb8eba32ab934df90 https://www.encodeproject.org/files/ENCFF642QKT/@@download/ENCFF642QKT.bam archived s3://encode-public/2015/02/09/032b2c99-5fe8-4437-a508-2f6e6174d02f/ENCFF642QKT.bam ENCFF207XER bam bam unfiltered alignments mm10-minimal ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQU/ 2615578713 ENCODE Processing Pipeline 322bfcee6ce17ec25af6c745c2c829aa https://www.encodeproject.org/files/ENCFF207XER/@@download/ENCFF207XER.bam archived s3://encode-public/2015/02/09/e8277fd7-766f-4d0c-bf32-b7408bd6628f/ENCFF207XER.bam ENCFF977HMC bam bam alignments mm10-minimal ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQS/, /files/ENCFF806TVZ/ 1941916943 ENCODE Processing Pipeline 898cedde60ca75b507d2eebce36299d8 https://www.encodeproject.org/files/ENCFF977HMC/@@download/ENCFF977HMC.bam archived s3://encode-public/2015/05/23/b688a4df-659e-4409-9345-89cbb5e113a3/ENCFF977HMC.bam ENCFF720UVE bam bam alignments mm10-minimal ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQU/ 1785974992 ENCODE Processing Pipeline 4c4223222177f5cb8e3422fd79a54ae0 https://www.encodeproject.org/files/ENCFF720UVE/@@download/ENCFF720UVE.bam archived s3://encode-public/2015/05/23/569a8025-8b4c-4193-a20a-f8c38a1a501b/ENCFF720UVE.bam ENCFF370MUS bam bam unfiltered alignments mm10 ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQS/, /files/ENCFF018NEO/ 2907920726 ENCODE Processing Pipeline 25b167018a566089431c3f25b6df0ad8 https://www.encodeproject.org/files/ENCFF370MUS/@@download/ENCFF370MUS.bam released s3://encode-public/2016/05/20/c17c1e40-8101-4c2f-882a-6f5cc3ae9520/ENCFF370MUS.bam ENCODE3 mm10 archived ENCFF582RRQ bam bam unfiltered alignments mm10 ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQU/ 2618420421 ENCODE Processing Pipeline 417b77b7729c858a4b96fc2d272572c8 https://www.encodeproject.org/files/ENCFF582RRQ/@@download/ENCFF582RRQ.bam released s3://encode-public/2016/05/20/cdc85638-e5a0-41b0-8ca5-97c6bd7275cc/ENCFF582RRQ.bam ENCODE3 mm10 archived ENCFF160FCQ bam bam alignments mm10 ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 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300-500 1 1_1 36 /files/ENCFF002AQS/, /files/ENCFF018NEO/ 2360143353 ENCODE Processing Pipeline 4971b8ac1ca39d4f5c05e5ba5e2d2a1b https://www.encodeproject.org/files/ENCFF471JUA/@@download/ENCFF471JUA.bam released s3://encode-public/2016/10/03/61cfe0b0-727c-45fa-813b-90f5e3c4d899/ENCFF471JUA.bam ENCODE3 mm10 archived ENCFF967KNB bam bam unfiltered alignments mm10 ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQU/ 2125059099 ENCODE Processing Pipeline fce861716a0a3ab8cec1c4e447f562aa https://www.encodeproject.org/files/ENCFF967KNB/@@download/ENCFF967KNB.bam released s3://encode-public/2016/10/03/f9b17c25-a1d8-44d9-8ca3-ecee93fe5de9/ENCFF967KNB.bam ENCODE3 mm10 archived ENCFF979XVT bam bam alignments mm10 ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication 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tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQS/ 2302513308 ENCODE Processing Pipeline 0fe1a67c2b298d3f4b102f514284706b https://www.encodeproject.org/files/ENCFF950HUY/@@download/ENCFF950HUY.bam released s3://encode-public/2020/10/10/6144275b-e97d-480f-a178-50bf3d02490b/ENCFF950HUY.bam ENCODE4 v1.5.1 mm10 released ENCFF075TNG bam bam alignments mm10 ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQS/ 1590859855 ENCODE Processing Pipeline c08e61f269fe0bb08531c03fa11c47fc https://www.encodeproject.org/files/ENCFF075TNG/@@download/ENCFF075TNG.bam released s3://encode-public/2020/10/10/e72b3cb9-2f35-4c70-9b4d-0462e82f3d50/ENCFF075TNG.bam ENCODE4 v1.5.1 mm10 released ENCFF866QAX bam bam unfiltered alignments mm10 ENCSR334IOH Control ChIP-seq /mouse-donors/ENCDO469XMJ/ 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/worm-donors/ENCDO287NTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175776/'], '@type': ['Target', 'Item'], 'name': 'xnd-1-celegans', 'label': 'xnd-1', '@id': '/targets/xnd-1-celegans/', 'title': 'xnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7fe16498-25d6-4071-af38-6cf6bacba35e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 363491815 Kevin White, UChicago f437275cf3337b6e9c3d4f2bea29977f https://www.encodeproject.org/files/ENCFF250GOV/@@download/ENCFF250GOV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/57cb4508-87ab-4ee4-9fb0-56aafc19e29a/ENCFF250GOV.fastq.gz missing genotype, missing compliant biosample characterization, mild to moderate bottlenecking, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF624TXI bam bam alignments ce10 ENCSR040FYF Control ChIP-seq /worm-donors/ENCDO287NTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175776/'], '@type': ['Target', 'Item'], 'name': 'xnd-1-celegans', 'label': 'xnd-1', '@id': '/targets/xnd-1-celegans/', 'title': 'xnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 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of unique reads ce10 ENCSR040FYF Control ChIP-seq /worm-donors/ENCDO287NTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175776/'], '@type': ['Target', 'Item'], 'name': 'xnd-1-celegans', 'label': 'xnd-1', '@id': '/targets/xnd-1-celegans/', 'title': 'xnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7fe16498-25d6-4071-af38-6cf6bacba35e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF624TXI/ 9979059 Kevin White, UChicago 237d252a59d7ed7b8ea6c5630304b720 https://www.encodeproject.org/files/ENCFF240GTB/@@download/ENCFF240GTB.bigWig released s3://encode-public/2015/10/02/3fdb34f0-4c1c-4f35-85f6-b6cd63f841a6/ENCFF240GTB.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, mild to moderate bottlenecking, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF199FFW bam bam alignments ce11 ENCSR040FYF Control ChIP-seq /worm-donors/ENCDO287NTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175776/'], '@type': ['Target', 'Item'], 'name': 'xnd-1-celegans', 'label': 'xnd-1', '@id': '/targets/xnd-1-celegans/', 'title': 'xnd-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7fe16498-25d6-4071-af38-6cf6bacba35e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF250GOV/ 521911486 Kevin White, UChicago 2ec101b3fc7cb976972cdf44291c595c https://www.encodeproject.org/files/ENCFF199FFW/@@download/ENCFF199FFW.bam released s3://encode-public/2016/01/20/5b6e01c5-3bd2-49fe-808a-e1195448b9c5/ENCFF199FFW.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, mild to moderate bottlenecking, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF793XJI bigWig bigWig signal of unique reads ce11 ENCSR040FYF Control ChIP-seq /worm-donors/ENCDO287NTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 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s3://encode-public/2016/02/03/15aca7e2-3026-449a-a0bc-217674a8fe05/ENCFF709PWY.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, mild to moderate bottlenecking, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF001HAZ bam bam alignments hg19 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBK/ 646809925 John Stamatoyannopoulos, UW 19b0c0b982adf1de2311892c51896fd1 https://www.encodeproject.org/files/ENCFF001HAZ/@@download/ENCFF001HAZ.bam archived s3://encode-public/2011/06/25/4510dbb6-76c4-4372-8341-a9a63facfcbc/ENCFF001HAZ.bam Lab custom hg19 archived low read depth, low read length ENCFF001HBA bigWig bigWig raw signal hg19 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HAZ/ 150230058 John Stamatoyannopoulos, UW d8a4cd39e98a28f3f9ee9f5624a6ee5a https://www.encodeproject.org/files/ENCFF001HBA/@@download/ENCFF001HBA.bigWig archived s3://encode-public/2011/06/25/1c6f1bb3-ab68-4059-a620-2a028d5e8a79/ENCFF001HBA.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HBK fastq fastq reads ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 696082402 John Stamatoyannopoulos, UW ee6e586d3c6ce2a8dbf30d93daf99e4a https://www.encodeproject.org/files/ENCFF001HBK/@@download/ENCFF001HBK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/b98aa741-f1de-4571-8ff1-97c6a49eeff0/ENCFF001HBK.fastq.gz low read depth, low read length ENCFF897RSN bam bam unfiltered alignments GRCh38 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HBK/ 857248761 ENCODE Processing Pipeline 08744f73d046c3510aff5b1c067db043 https://www.encodeproject.org/files/ENCFF897RSN/@@download/ENCFF897RSN.bam released s3://encode-public/2016/08/09/22d90aea-c455-414e-bafa-b64e5d6d65e4/ENCFF897RSN.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF186FRO bam bam alignments GRCh38 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HBK/ 580704760 ENCODE Processing Pipeline 26604da5b755265986f4f7bb692c2a5d https://www.encodeproject.org/files/ENCFF186FRO/@@download/ENCFF186FRO.bam released s3://encode-public/2016/08/09/d02e4f92-03b7-42e3-b64c-6a8e8accca5f/ENCFF186FRO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF262KDA bam bam unfiltered alignments hg19 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HBK/ 853162624 ENCODE Processing Pipeline 4d649c42241de3e47b3f75d919c6bcdd https://www.encodeproject.org/files/ENCFF262KDA/@@download/ENCFF262KDA.bam released s3://encode-public/2016/11/13/cd59a112-f66b-4201-868d-a5bb3e633cba/ENCFF262KDA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF131LGY bam bam alignments hg19 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HBK/ 576085336 ENCODE Processing Pipeline 6b766c2626dd8d4a9aaf54098ba12231 https://www.encodeproject.org/files/ENCFF131LGY/@@download/ENCFF131LGY.bam released s3://encode-public/2016/11/13/ceb3fd41-c527-497a-b6df-899c938857a7/ENCFF131LGY.bam ENCODE3 hg19 archived low read depth, low read length ENCFF578CHY bam bam unfiltered alignments GRCh38 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HBK/ 837073276 ENCODE Processing Pipeline 980db4cbf7ef28705057af3e86e29096 https://www.encodeproject.org/files/ENCFF578CHY/@@download/ENCFF578CHY.bam released s3://encode-public/2020/09/03/a46f865c-db0a-423d-82c1-9cdee109651c/ENCFF578CHY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF847SKR bam bam alignments GRCh38 ENCSR000DQS Control ChIP-seq /human-donors/ENCDO000ABG/ EFO:0002783 GM06990 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HBK/ 633464864 ENCODE Processing Pipeline 28cdb0155136e07d44ba762856804781 https://www.encodeproject.org/files/ENCFF847SKR/@@download/ENCFF847SKR.bam released s3://encode-public/2020/09/03/92f76a0d-8a6d-4754-a7f0-c310294494bc/ENCFF847SKR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000WHP bam bam alignments hg19 ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIA/ 684199574 Michael Snyder, Stanford 0c82dd554fe6aabd1810af7ef12cb625 https://www.encodeproject.org/files/ENCFF000WHP/@@download/ENCFF000WHP.bam archived s3://encode-public/2012/07/01/233e61bd-7100-4216-afbd-a70fae069d25/ENCFF000WHP.bam Lab custom hg19 archived mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF000WHQ bam bam alignments hg19 ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 34 /files/ENCFF000WHX/ 531745910 Michael Snyder, Stanford a220bae7528967b67241b91879c92047 https://www.encodeproject.org/files/ENCFF000WHQ/@@download/ENCFF000WHQ.bam archived s3://encode-public/2012/07/01/10237402-917d-431d-b2a8-df7c7ce50d50/ENCFF000WHQ.bam Lab custom hg19 archived mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF000WHS bigWig bigWig signal hg19 ENCSR000EAH Control ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 347935306 Michael Snyder, Stanford d5b3223e799675cba41f894832e29154 https://www.encodeproject.org/files/ENCFF000WHS/@@download/ENCFF000WHS.bigWig archived s3://encode-public/2012/07/01/300d10cd-9652-47c7-a491-07753251ac49/ENCFF000WHS.bigWig Lab custom hg19 archived mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF000WHX fastq fastq reads ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 34 single-ended 439850000 Michael Snyder, Stanford f40b253cf7c100c04db10a76f281f8a3 https://www.encodeproject.org/files/ENCFF000WHX/@@download/ENCFF000WHX.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/8ac8e023-09ad-46f4-a177-b2b00f00df6a/ENCFF000WHX.fastq.gz mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF000WIA fastq fastq reads ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 535021660 Michael Snyder, Stanford e3cdc7509abcdb465db6b1cb6cca1ef4 https://www.encodeproject.org/files/ENCFF000WIA/@@download/ENCFF000WIA.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/de1000c7-6fc1-4ef9-b48d-ac8adb053191/ENCFF000WIA.fastq.gz mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF912CEX bam bam alignments GRCh38 ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WHX/ 186826795 ENCODE Processing Pipeline 161fb6b2efe81a6ce218a889345885cb https://www.encodeproject.org/files/ENCFF912CEX/@@download/ENCFF912CEX.bam released s3://encode-public/2020/10/27/00d33aee-1800-4086-849a-166ead17db6f/ENCFF912CEX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF654MIR bam bam unfiltered alignments GRCh38 ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WIA/ 651208790 ENCODE Processing Pipeline 4162ca1c346309193894cdd90c0bac6a https://www.encodeproject.org/files/ENCFF654MIR/@@download/ENCFF654MIR.bam released s3://encode-public/2020/10/27/df37b9d6-f1e2-48ae-861c-78805263213f/ENCFF654MIR.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF252IKT bam bam unfiltered alignments GRCh38 ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WHX/ 458561626 ENCODE Processing Pipeline 28962dc0d59e7e605746eec760a6ab69 https://www.encodeproject.org/files/ENCFF252IKT/@@download/ENCFF252IKT.bam released s3://encode-public/2020/10/27/076c77fe-17e0-49c2-9362-a7a6d97a8638/ENCFF252IKT.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF344LCQ bam bam alignments GRCh38 ENCSR000EAH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WIA/ 279219982 ENCODE Processing Pipeline 8077d1799f05a32428840531c2ffc1d6 https://www.encodeproject.org/files/ENCFF344LCQ/@@download/ENCFF344LCQ.bam released s3://encode-public/2020/10/27/091a6cd0-c328-4d80-b1f0-0886cb0d5c5c/ENCFF344LCQ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, mixed read lengths insufficient read length, insufficient read depth extremely low read depth ENCFF753KQV bam bam unfiltered alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF300USB/, /files/ENCFF018NEO/, /files/ENCFF514LBY/ 3783681107 ENCODE Processing Pipeline c8fb337181fd079589c92c028bec29d2 https://www.encodeproject.org/files/ENCFF753KQV/@@download/ENCFF753KQV.bam released s3://encode-public/2018/02/22/80f960dd-182d-425f-8fda-aca571e59b99/ENCFF753KQV.bam ENCODE3 mm10 archived inconsistent platforms ENCFF226QFS bam bam unfiltered alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF518ULJ/, /files/ENCFF954VRX/ 3828391236 ENCODE Processing Pipeline 967611d8e1f545a7d77a981303403c33 https://www.encodeproject.org/files/ENCFF226QFS/@@download/ENCFF226QFS.bam released s3://encode-public/2018/02/22/e2097e0b-fd10-49fa-92fd-1e584bb720c6/ENCFF226QFS.bam ENCODE3 mm10 archived inconsistent platforms ENCFF954VRX fastq fastq reads ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2654874733 Bing Ren, UCSD a7ad972de2f309956e28a27f097fae04 SRA:SRR3652842 https://www.encodeproject.org/files/ENCFF954VRX/@@download/ENCFF954VRX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/22d1c97b-a334-4eae-b6a7-e95c84073c2e/ENCFF954VRX.fastq.gz inconsistent platforms ENCFF514LBY fastq fastq reads ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2642209415 Bing Ren, UCSD c203f49ebcea925fa1ac71241e814266 SRA:SRR3652844 https://www.encodeproject.org/files/ENCFF514LBY/@@download/ENCFF514LBY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/78d2b7e4-9a63-4dbb-9004-3942b598bcc3/ENCFF514LBY.fastq.gz inconsistent platforms ENCFF082TGD bam bam alignments mm10-minimal ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF954VRX/ 2155680869 ENCODE Processing Pipeline 4908802935b64ff5721ab0ee065a11e4 https://www.encodeproject.org/files/ENCFF082TGD/@@download/ENCFF082TGD.bam archived s3://encode-public/2015/10/31/efaceb61-2f82-447a-9bac-9b280fe43ae9/ENCFF082TGD.bam inconsistent platforms ENCFF314ZXJ bam bam alignments mm10-minimal ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF514LBY/ 2138909393 ENCODE Processing Pipeline 8673aac04e7677247505cabc52a036a4 https://www.encodeproject.org/files/ENCFF314ZXJ/@@download/ENCFF314ZXJ.bam archived s3://encode-public/2015/10/31/62850b4d-accb-4c61-ac70-0d2bd5dca584/ENCFF314ZXJ.bam inconsistent platforms ENCFF320FCX bam bam unfiltered alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF514LBY/ 3221405565 ENCODE Processing Pipeline 440ba64db6b73cab040ee25b87b0875a https://www.encodeproject.org/files/ENCFF320FCX/@@download/ENCFF320FCX.bam released s3://encode-public/2016/05/20/dec26eb2-9345-4b4a-bd57-b727200cb5f2/ENCFF320FCX.bam ENCODE3 mm10 archived inconsistent platforms ENCFF549OED bam bam unfiltered alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF954VRX/ 3234856249 ENCODE Processing Pipeline 7958022d0c53c1f6ad61ea67c9a077c7 https://www.encodeproject.org/files/ENCFF549OED/@@download/ENCFF549OED.bam released s3://encode-public/2016/05/20/65114f6d-33c5-4eb5-b701-bda8f7155265/ENCFF549OED.bam ENCODE3 mm10 archived inconsistent platforms ENCFF801CNP bam bam alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF514LBY/ 2138335446 ENCODE Processing Pipeline eabb95671cd22e00c3121f3149e322ad https://www.encodeproject.org/files/ENCFF801CNP/@@download/ENCFF801CNP.bam released s3://encode-public/2016/05/20/3fed8de1-ccf5-4961-b0ef-7959f1f4e6eb/ENCFF801CNP.bam ENCODE3 mm10 archived inconsistent platforms ENCFF123XKF bam bam alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF954VRX/ 2155052268 ENCODE Processing Pipeline 3a60cd4b04e47acf15caa22bf1f9e77d https://www.encodeproject.org/files/ENCFF123XKF/@@download/ENCFF123XKF.bam released s3://encode-public/2016/05/20/6af9af8c-8606-4cba-bebb-63dc519583cc/ENCFF123XKF.bam ENCODE3 mm10 archived inconsistent platforms ENCFF300USB fastq fastq reads ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 439110997 Bing Ren, UCSD baad39c8bd14078c8f6650bdadfb49e9 SRA:SRR3652845 https://www.encodeproject.org/files/ENCFF300USB/@@download/ENCFF300USB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/7315cd6e-1934-4426-adda-31e54ab46b91/ENCFF300USB.fastq.gz inconsistent platforms ENCFF518ULJ fastq fastq reads ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 465848715 Bing Ren, UCSD 210c3d3804dbd2758a0d332359f7aefa SRA:SRR3652843 https://www.encodeproject.org/files/ENCFF518ULJ/@@download/ENCFF518ULJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/25cf0e33-019b-45ec-870d-02fb17b0e89c/ENCFF518ULJ.fastq.gz inconsistent platforms ENCFF615JIE bam bam alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF518ULJ/, /files/ENCFF954VRX/ 2556100616 ENCODE Processing Pipeline 7a6584eb7ed56054de7a2393c2e759e6 https://www.encodeproject.org/files/ENCFF615JIE/@@download/ENCFF615JIE.bam released s3://encode-public/2016/10/09/3e949a04-43fa-4e0e-8a38-9d7c3f8ebca9/ENCFF615JIE.bam ENCODE3 mm10 archived inconsistent platforms ENCFF164ZUK bam bam alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF300USB/, /files/ENCFF018NEO/, /files/ENCFF514LBY/ 2517156365 ENCODE Processing Pipeline 4c3bc83088477727fb68757fde6f6c8d https://www.encodeproject.org/files/ENCFF164ZUK/@@download/ENCFF164ZUK.bam released s3://encode-public/2016/10/09/ecac3de8-b965-4367-ad4b-57d2220cb839/ENCFF164ZUK.bam ENCODE3 mm10 archived inconsistent platforms ENCFF675YKO bam bam unfiltered alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF954VRX/, /files/ENCFF518ULJ/ 3837660744 ENCODE Processing Pipeline c68ae52845f7f1126a728131f869a1b9 https://www.encodeproject.org/files/ENCFF675YKO/@@download/ENCFF675YKO.bam released s3://encode-public/2020/10/08/7dc27803-256f-4d4b-bd62-18ebd66d209b/ENCFF675YKO.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF108IDL bam bam alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF954VRX/, /files/ENCFF518ULJ/ 2712055323 ENCODE Processing Pipeline d54f41f0b0a0022b407a62cf216a5983 https://www.encodeproject.org/files/ENCFF108IDL/@@download/ENCFF108IDL.bam released s3://encode-public/2020/10/08/41abb991-14fc-47c5-8be4-2fdb6b2c5067/ENCFF108IDL.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF839RRS bam bam alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF514LBY/, /files/ENCFF300USB/, /files/ENCFF309GLL/ 2667113247 ENCODE Processing Pipeline cf491000c93920949b00715814b1cbae https://www.encodeproject.org/files/ENCFF839RRS/@@download/ENCFF839RRS.bam released s3://encode-public/2020/10/08/22fb36fd-fe93-4189-aedb-f5e46b9e1c93/ENCFF839RRS.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF138TVU bam bam unfiltered alignments mm10 ENCSR685UUM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF514LBY/, /files/ENCFF300USB/, /files/ENCFF309GLL/ 3790018407 ENCODE Processing Pipeline ba27a6fcbbc32a1f1d0e0ed378264134 https://www.encodeproject.org/files/ENCFF138TVU/@@download/ENCFF138TVU.bam released s3://encode-public/2020/10/08/ac697712-c9c3-4495-a5cb-40891b4b1a03/ENCFF138TVU.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF001GZS bam bam alignments hg19 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAG/ 752366339 John Stamatoyannopoulos, UW fecca16e8868cc72d17f9ece379c0e6f https://www.encodeproject.org/files/ENCFF001GZS/@@download/ENCFF001GZS.bam archived s3://encode-public/2011/06/25/c0444a8b-84d6-49cc-b58c-031877a67ff5/ENCFF001GZS.bam Lab custom hg19 archived low read depth, low read length ENCFF001GZU bigWig bigWig raw signal hg19 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001GZS/ 167316066 John Stamatoyannopoulos, UW edd0d289985ea9ceef0f6bfb13ade7a7 https://www.encodeproject.org/files/ENCFF001GZU/@@download/ENCFF001GZU.bigWig archived s3://encode-public/2011/06/25/395bac70-25be-45c8-bfac-a89df0e70a77/ENCFF001GZU.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HAG fastq fastq reads ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 812757931 John Stamatoyannopoulos, UW 0a759dde4af7b02a345dd23dba37df5d https://www.encodeproject.org/files/ENCFF001HAG/@@download/ENCFF001HAG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/e1b8108b-f51f-481b-8534-114119a1ac04/ENCFF001HAG.fastq.gz low read depth, low read length ENCFF932RYQ bam bam unfiltered alignments GRCh38 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAG/, /files/ENCFF643CGH/ 994851828 ENCODE Processing Pipeline c53c7e8b960df1b15348e4a9ca7c1533 https://www.encodeproject.org/files/ENCFF932RYQ/@@download/ENCFF932RYQ.bam released s3://encode-public/2016/08/09/2d8bdfe5-852b-40cd-9e42-18d08707d19a/ENCFF932RYQ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF517WZK bam bam alignments GRCh38 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAG/, /files/ENCFF643CGH/ 683743516 ENCODE Processing Pipeline b153727c7e120f77a4143968beaf2731 https://www.encodeproject.org/files/ENCFF517WZK/@@download/ENCFF517WZK.bam released s3://encode-public/2016/08/09/6b36b3fd-f7d7-4b11-b730-ebce1f557d5e/ENCFF517WZK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF503LCV bam bam unfiltered alignments hg19 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAG/, /files/ENCFF807MUK/ 989067682 ENCODE Processing Pipeline 85869bf7c44253a27116e598cec92b8d https://www.encodeproject.org/files/ENCFF503LCV/@@download/ENCFF503LCV.bam released s3://encode-public/2016/11/13/43bb98a4-3ccf-48f1-87c6-32b79d2eec4b/ENCFF503LCV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF706WFS bam bam alignments hg19 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAG/, /files/ENCFF807MUK/ 683913646 ENCODE Processing Pipeline 316bcdaf50a4d87487c8b8c426d7040d https://www.encodeproject.org/files/ENCFF706WFS/@@download/ENCFF706WFS.bam released s3://encode-public/2016/11/13/0c158d37-8ffb-46fe-a74c-8d144a8c095a/ENCFF706WFS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF646THV bam bam unfiltered alignments GRCh38 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAG/ 973002640 ENCODE Processing Pipeline 8feff1bb585e4fbd2b7466a1688e29cd https://www.encodeproject.org/files/ENCFF646THV/@@download/ENCFF646THV.bam released s3://encode-public/2020/09/03/bed7e85b-e290-4ea9-921c-c3d24d43b863/ENCFF646THV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF787RBK bam bam alignments GRCh38 ENCSR000DQE Control ChIP-seq /human-donors/ENCDO000AAG/ EFO:0002779 BJ cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAG/ 751088569 ENCODE Processing Pipeline 2591772cfbc3e2f27e579aae0bc0aa0a https://www.encodeproject.org/files/ENCFF787RBK/@@download/ENCFF787RBK.bam released s3://encode-public/2020/09/03/b94d18e9-45dd-4f63-a2fa-d5fe68d23204/ENCFF787RBK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF949YUB fastq fastq reads ENCSR160SNG Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 165155288 Kevin White, UChicago 7a37878bcc5925fbc21da902c2dba526 https://www.encodeproject.org/files/ENCFF949YUB/@@download/ENCFF949YUB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF139MZH/ released s3://encode-public/2015/07/30/bc46b484-c85d-4216-8af3-9e27a0ed0548/ENCFF949YUB.fastq.gz missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF674IEG bam bam alignments ce10 ENCSR160SNG Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF949YUB/ 175729478 Kevin White, UChicago e79ed0febf2e6fa2e5b1285c86f7b563 https://www.encodeproject.org/files/ENCFF674IEG/@@download/ENCFF674IEG.bam released s3://encode-public/2015/08/07/44cd94e2-cb16-4bf0-a3b9-bc07006aab23/ENCFF674IEG.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF806SYK bigWig bigWig signal of unique reads ce10 ENCSR160SNG Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF674IEG/ 10051336 Kevin White, UChicago ca9b35f06c92cc7299b4cce8fe2b12c1 https://www.encodeproject.org/files/ENCFF806SYK/@@download/ENCFF806SYK.bigWig released s3://encode-public/2015/10/02/5d00af0a-1925-4269-b8c0-57f81c809df2/ENCFF806SYK.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF385KVZ bigWig bigWig read-depth normalized signal ce10 ENCSR160SNG Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF674IEG/ 10041174 Kevin White, UChicago d2c2ea8d6b4243974a72ea93e11605b9 https://www.encodeproject.org/files/ENCFF385KVZ/@@download/ENCFF385KVZ.bigWig released s3://encode-public/2015/10/02/1f6ac9a6-8ca5-4850-a532-dc198f62573a/ENCFF385KVZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF774TGM bam bam alignments ce11 ENCSR160SNG Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF949YUB/ 175867299 Kevin White, UChicago 0ea04c8b7fbd9ba3c93ea492949f7a52 https://www.encodeproject.org/files/ENCFF774TGM/@@download/ENCFF774TGM.bam released s3://encode-public/2016/01/19/4ddfdd1c-01e4-4d85-910a-8cd172b38b20/ENCFF774TGM.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF587PII bigWig bigWig signal of unique reads ce11 ENCSR160SNG Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF774TGM/ 10056111 Kevin White, UChicago 11636e319876c3b852c5ed31f22230d8 https://www.encodeproject.org/files/ENCFF587PII/@@download/ENCFF587PII.bigWig released s3://encode-public/2016/02/03/8f43c295-a2f8-43a5-aee1-69cdf344d161/ENCFF587PII.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF936DVC bigWig bigWig read-depth normalized signal ce11 ENCSR160SNG Control ChIP-seq /worm-donors/ENCDO318LWC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181588/'], '@type': ['Target', 'Item'], 'name': 'pag-3-celegans', 'label': 'pag-3', '@id': '/targets/pag-3-celegans/', 'title': 'pag-3 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'e7edd3a2-dba5-4259-bd94-1a025dafd209', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF774TGM/ 10046525 Kevin White, UChicago 8adc10b64957f1b37f0acc7b9db6f3be https://www.encodeproject.org/files/ENCFF936DVC/@@download/ENCFF936DVC.bigWig released s3://encode-public/2016/02/03/e8c3d212-a6ab-4f2d-a5c9-4f1e4d994f47/ENCFF936DVC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF000RFY bam bam alignments hg19 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RGI/ 1025441599 Richard Myers, HAIB 61b2c38daceaaf6c25444cadf00ca381 https://www.encodeproject.org/files/ENCFF000RFY/@@download/ENCFF000RFY.bam archived s3://encode-public/2012/01/23/3661613f-0bc9-48a0-80a0-41d4446ae48f/ENCFF000RFY.bam Lab custom hg19 archived low read length ENCFF000RFZ bigWig bigWig raw signal hg19 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 2305845 Richard Myers, HAIB 34927ae7db9b3df23e95e1bf1f4b818a https://www.encodeproject.org/files/ENCFF000RFZ/@@download/ENCFF000RFZ.bigWig archived s3://encode-public/2012/01/23/8f9a6393-3e66-4c09-8518-ec730c203119/ENCFF000RFZ.bigWig Lab custom hg19 archived low read length ENCFF000RGI fastq fastq reads ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 847959770 Richard Myers, HAIB 8dff9f0c06673c2b5580cafb689af27c https://www.encodeproject.org/files/ENCFF000RGI/@@download/ENCFF000RGI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/47c83171-16d3-469c-8aab-a9a7d7c8b186/ENCFF000RGI.fastq.gz low read length ENCFF360VTI bam bam unfiltered alignments GRCh38 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RGI/ 1181835453 ENCODE Processing Pipeline 44a3724e6a7a8775d04c17fa87897735 https://www.encodeproject.org/files/ENCFF360VTI/@@download/ENCFF360VTI.bam released s3://encode-public/2016/10/26/242bb70d-e640-4c59-8940-e247abe7649f/ENCFF360VTI.bam ENCODE3 GRCh38 archived low read length ENCFF077ITP bam bam alignments GRCh38 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RGI/ 832963765 ENCODE Processing Pipeline 9ca83a2706c2166f033f8bd9efadd9e7 https://www.encodeproject.org/files/ENCFF077ITP/@@download/ENCFF077ITP.bam released s3://encode-public/2016/10/26/c6fc4527-3be0-43d8-91cd-c6bcb13afcbb/ENCFF077ITP.bam ENCODE3 GRCh38 archived low read length ENCFF040VML bam bam unfiltered alignments hg19 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RGI/ 1177622543 ENCODE Processing Pipeline ed5c7c8b29592ecbaebc51791cbf19b7 https://www.encodeproject.org/files/ENCFF040VML/@@download/ENCFF040VML.bam released s3://encode-public/2016/11/13/4ca960d7-6f73-4259-b696-597d1f37fd6c/ENCFF040VML.bam ENCODE3 hg19 archived low read length ENCFF108EFL bam bam alignments hg19 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RGI/ 833184963 ENCODE Processing Pipeline 3c9aef061b402e861238f1408862ee52 https://www.encodeproject.org/files/ENCFF108EFL/@@download/ENCFF108EFL.bam released s3://encode-public/2016/11/13/6478e204-6e3f-4168-82c5-1a716a9cb5bc/ENCFF108EFL.bam ENCODE3 hg19 archived low read length ENCFF823NXE bam bam unfiltered alignments GRCh38 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RGI/, /files/ENCFF110MCL/ 1151204273 ENCODE Processing Pipeline 135af80622c4204e8cf8120188a7d459 https://www.encodeproject.org/files/ENCFF823NXE/@@download/ENCFF823NXE.bam released s3://encode-public/2020/09/03/0940200f-045b-49f9-b057-b7e08b602ae5/ENCFF823NXE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF622GZX bam bam alignments GRCh38 ENCSR000BLQ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RGI/, /files/ENCFF110MCL/ 909852885 ENCODE Processing Pipeline 996fdd0da63eab534c3208f375dad07a https://www.encodeproject.org/files/ENCFF622GZX/@@download/ENCFF622GZX.bam released s3://encode-public/2020/09/03/75be05b0-e9de-40cd-a593-65fbbe557104/ENCFF622GZX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF918EPA fastq fastq reads ENCSR385LHQ Control ChIP-seq /worm-donors/ENCDO412BQA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 711092203 Kevin White, UChicago 0633217ae256deb55cadaeb78d2fc9c7 https://www.encodeproject.org/files/ENCFF918EPA/@@download/ENCFF918EPA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/7b3d6fe2-8f7f-4454-9fdb-ee2c904ebb59/ENCFF918EPA.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF281BGO bam bam alignments ce10 ENCSR385LHQ Control ChIP-seq /worm-donors/ENCDO412BQA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF918EPA/ 1021122751 Kevin White, UChicago 849f438f91bc2d8eb605f3b2f6dfeb31 https://www.encodeproject.org/files/ENCFF281BGO/@@download/ENCFF281BGO.bam released s3://encode-public/2015/08/07/3bbf0656-65b1-42b6-81c2-4169708527fb/ENCFF281BGO.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF442JQX bigWig bigWig signal of unique reads ce10 ENCSR385LHQ Control ChIP-seq /worm-donors/ENCDO412BQA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF281BGO/ 9978629 Kevin White, UChicago cd8cae26be9fca08f40c275b300fe9bc https://www.encodeproject.org/files/ENCFF442JQX/@@download/ENCFF442JQX.bigWig released s3://encode-public/2015/10/02/25ed8f00-8ddc-48fc-aeda-6a2cc9219624/ENCFF442JQX.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF664GPX bigWig bigWig read-depth normalized signal ce10 ENCSR385LHQ Control ChIP-seq /worm-donors/ENCDO412BQA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF281BGO/ 10018612 Kevin White, UChicago 5fd84b4814d5c12d0e70a592c2395f78 https://www.encodeproject.org/files/ENCFF664GPX/@@download/ENCFF664GPX.bigWig released s3://encode-public/2015/10/02/75701f98-984c-4410-9024-da913acc2205/ENCFF664GPX.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF913CBZ bam bam alignments ce11 ENCSR385LHQ Control ChIP-seq /worm-donors/ENCDO412BQA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF918EPA/ 1022024009 Kevin White, UChicago 484acfe15665d54a3d050f595088387a https://www.encodeproject.org/files/ENCFF913CBZ/@@download/ENCFF913CBZ.bam released s3://encode-public/2016/01/19/4a8b82ac-1b36-4303-a838-c8c51d2cfff6/ENCFF913CBZ.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF312TBR bigWig bigWig signal of unique reads ce11 ENCSR385LHQ Control ChIP-seq /worm-donors/ENCDO412BQA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF913CBZ/ 9978199 Kevin White, UChicago 4f4d7fec182dbe757c29078adafcb27f https://www.encodeproject.org/files/ENCFF312TBR/@@download/ENCFF312TBR.bigWig released s3://encode-public/2016/02/03/0ef3e69c-45d3-4e6b-ab37-031f193aa650/ENCFF312TBR.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF900JWK bigWig bigWig read-depth normalized signal ce11 ENCSR385LHQ Control ChIP-seq /worm-donors/ENCDO412BQA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF913CBZ/ 10016115 Kevin White, UChicago b8f564272265543e0688cf0f8e00a849 https://www.encodeproject.org/files/ENCFF900JWK/@@download/ENCFF900JWK.bigWig released s3://encode-public/2016/02/03/e8ff0677-e714-41a2-bb2b-3e865caf9aef/ENCFF900JWK.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF001NHO bigWig bigWig signal mm9 ENCSR000ERT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 /files/ENCFF001NHP/ 152419059 Michael Snyder, Stanford 54159563e818fdb878372a134531969c https://www.encodeproject.org/files/ENCFF001NHO/@@download/ENCFF001NHO.bigWig archived s3://encode-public/2012/08/01/5a6b6c36-8f25-41a9-ac7c-a6411bcc32a4/ENCFF001NHO.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, low read length ENCFF001NHP bam bam alignments mm9 ENCSR000ERT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 27 /files/ENCFF001NIF/ 460102718 Michael Snyder, Stanford 16d1c780f3355705526f60b42b4d7bbe https://www.encodeproject.org/files/ENCFF001NHP/@@download/ENCFF001NHP.bam archived s3://encode-public/2012/08/01/ff253721-1c6e-4a36-85be-d242a3fee587/ENCFF001NHP.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, low read length ENCFF001NIF fastq fastq reads ENCSR000ERT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 single-ended 1152419783 Michael Snyder, Stanford dd5e8c77bb19a7d565c858b559b22169 https://www.encodeproject.org/files/ENCFF001NIF/@@download/ENCFF001NIF.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/a714daa5-0f04-455d-a48a-eb072a583c13/ENCFF001NIF.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF877TZV bam bam unfiltered alignments mm10 ENCSR000ERT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NIF/ 1336907946 ENCODE Processing Pipeline b3c08280e20b829e624b7cbb108c6ea4 https://www.encodeproject.org/files/ENCFF877TZV/@@download/ENCFF877TZV.bam released s3://encode-public/2016/10/26/13f7e7c3-4f9b-42f8-b794-63f84b4f7384/ENCFF877TZV.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF528WZN bam bam alignments mm10 ENCSR000ERT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NIF/ 718699628 ENCODE Processing Pipeline 2e8a28e5078f4ab6373b2ac224e82972 https://www.encodeproject.org/files/ENCFF528WZN/@@download/ENCFF528WZN.bam released s3://encode-public/2016/10/26/2d844dca-8bf6-412f-97e1-b12c6b7de72e/ENCFF528WZN.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF106PUB bam bam unfiltered alignments mm10 ENCSR000ERT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF001NIF/, /files/ENCFF309GLL/ 1314577411 ENCODE Processing Pipeline 779383db570aa667f4fe4a55d224ebeb https://www.encodeproject.org/files/ENCFF106PUB/@@download/ENCFF106PUB.bam released s3://encode-public/2020/11/06/d809c3b7-aa43-4e18-818a-e91cfd6c54d1/ENCFF106PUB.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF801MBJ bam bam alignments mm10 ENCSR000ERT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF001NIF/, /files/ENCFF309GLL/ 767881967 ENCODE Processing Pipeline a585bce97afc0c1072a94ca1aa354a1f https://www.encodeproject.org/files/ENCFF801MBJ/@@download/ENCFF801MBJ.bam released s3://encode-public/2020/11/06/49c2c00f-c7e2-4528-9a8a-8a68963c1d5e/ENCFF801MBJ.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF001KAA bam bam alignments mm9 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KAM/ 388952014 Bing Ren, UCSD d820f717bd7a61a74823d64479c31d50 https://www.encodeproject.org/files/ENCFF001KAA/@@download/ENCFF001KAA.bam archived s3://encode-public/2011/12/23/f5703d07-065f-4d11-a890-20ad4fcf63fd/ENCFF001KAA.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KAB bam bam alignments mm9 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KAK/ 647565389 Bing Ren, UCSD a8e7687c448b4ab3eaa0d49900ae47ea https://www.encodeproject.org/files/ENCFF001KAB/@@download/ENCFF001KAB.bam archived s3://encode-public/2011/12/23/95009cf5-5184-439c-86e3-50b3eaebdcf5/ENCFF001KAB.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KAC bigWig bigWig signal mm9 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KAA/, /files/ENCFF001KAB/ 77167714 Bing Ren, UCSD 35bbd19e2eb22265cd0baffcb705948c https://www.encodeproject.org/files/ENCFF001KAC/@@download/ENCFF001KAC.bigWig archived s3://encode-public/2011/12/23/45776cc3-bf7d-40f4-a3de-632017498ded/ENCFF001KAC.bigWig Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KAK fastq fastq reads ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 single-ended 728976607 Bing Ren, UCSD 54da83f5090499d6da90aa532e0ec107 https://www.encodeproject.org/files/ENCFF001KAK/@@download/ENCFF001KAK.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/5636e658-7b67-4b1e-90a0-45d29c0e9c74/ENCFF001KAK.fastq.gz low read depth, low read length insufficient read depth ENCFF001KAM fastq fastq reads ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 single-ended 657450613 Bing Ren, UCSD e9c90d96158c1cc72db1ac2f740843ec https://www.encodeproject.org/files/ENCFF001KAM/@@download/ENCFF001KAM.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/a14d7d43-ee14-41f3-a8cf-fa9a5721f45b/ENCFF001KAM.fastq.gz low read depth, low read length insufficient read depth ENCFF921QOH bam bam unfiltered alignments mm10-minimal ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KAK/, /files/ENCFF806TVZ/ 847090907 J. Michael Cherry, Stanford 02d52d0c2428dd029bf84fb9d27c9ff8 https://www.encodeproject.org/files/ENCFF921QOH/@@download/ENCFF921QOH.bam archived s3://encode-public/2015/02/04/ddfeba3a-b69e-41b7-a5a0-f41170472485/ENCFF921QOH.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF933GCK bam bam unfiltered alignments mm10-minimal ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KAM/, /files/ENCFF806TVZ/ 737542946 J. Michael Cherry, Stanford 530fdb6e125df8fee5aebc2d0b467be2 https://www.encodeproject.org/files/ENCFF933GCK/@@download/ENCFF933GCK.bam archived s3://encode-public/2015/02/04/5d37ec06-40cd-49bc-b699-a75360fb1ea0/ENCFF933GCK.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF111GKZ bam bam alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KAK/ 498183957 ENCODE Processing Pipeline a6d5d4c0d95c814a38c817bf7aa7f88c https://www.encodeproject.org/files/ENCFF111GKZ/@@download/ENCFF111GKZ.bam released s3://encode-public/2016/04/28/83cb1bce-305b-4340-955b-cb1925669325/ENCFF111GKZ.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF389ARL bam bam alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KAM/ 382815863 ENCODE Processing Pipeline ebf30abd5b723201129c246180c8380c https://www.encodeproject.org/files/ENCFF389ARL/@@download/ENCFF389ARL.bam released s3://encode-public/2016/04/28/f96c6d11-7720-4f50-83c3-719e907cd4d9/ENCFF389ARL.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF431NND bam bam unfiltered alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KAK/ 848353470 ENCODE Processing Pipeline 815d2b08d7aab03cf6a14bd5d79cb7de https://www.encodeproject.org/files/ENCFF431NND/@@download/ENCFF431NND.bam released s3://encode-public/2016/07/06/e6d425ec-4bf3-431c-a447-d5104aa4c740/ENCFF431NND.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF176QFI bam bam unfiltered alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KAM/ 737845140 ENCODE Processing Pipeline 0430db91a862ba0443ac2c29ac1b8a48 https://www.encodeproject.org/files/ENCFF176QFI/@@download/ENCFF176QFI.bam released s3://encode-public/2016/07/06/bd9269b7-3264-4344-bf22-90fabbe1b0b9/ENCFF176QFI.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF412GIX bam bam alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KAK/, /files/ENCFF309GLL/ 534389195 ENCODE Processing Pipeline fdcbf7634a66b724bb44a3551e0d303a https://www.encodeproject.org/files/ENCFF412GIX/@@download/ENCFF412GIX.bam released s3://encode-public/2020/10/12/617243be-149b-4252-844b-ca4180f5eb8c/ENCFF412GIX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF013VMP bam bam unfiltered alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KAK/, /files/ENCFF309GLL/ 831854134 ENCODE Processing Pipeline 73f7babc819dd042093d5d4a05e55e84 https://www.encodeproject.org/files/ENCFF013VMP/@@download/ENCFF013VMP.bam released s3://encode-public/2020/10/12/004a628d-0ab0-465b-b42d-01c72a0b8743/ENCFF013VMP.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF467AIM bam bam alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KAM/, /files/ENCFF309GLL/ 406013493 ENCODE Processing Pipeline ba0fc08adb9b86e151efde069a89273f https://www.encodeproject.org/files/ENCFF467AIM/@@download/ENCFF467AIM.bam released s3://encode-public/2020/10/12/8e2f24e9-1ae9-4e90-90fe-a1c1d040c0f8/ENCFF467AIM.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF922JFA bam bam unfiltered alignments mm10 ENCSR000CAT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002037 cerebellum tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KAM/, /files/ENCFF309GLL/ 729722437 ENCODE Processing Pipeline fdabf3f05e10fbd71c1029c6e3832395 https://www.encodeproject.org/files/ENCFF922JFA/@@download/ENCFF922JFA.bam released s3://encode-public/2020/10/12/a6803687-fe1e-45b3-bbf4-e91c565695ff/ENCFF922JFA.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF000RTD bam bam alignments hg19 ENCSR000DLP Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 35 432630922 Vishwanath Iyer, UTA e3e3b38e6df3b0ca68360c84ca05373f https://www.encodeproject.org/files/ENCFF000RTD/@@download/ENCFF000RTD.bam archived s3://encode-public/2012/07/26/55424168-402e-4520-bc68-d9f275917da4/ENCFF000RTD.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000RTE bigWig bigWig signal hg19 ENCSR000DLP Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 3721981182 Vishwanath Iyer, UTA a0586cf612d6f9498c8f9d7153f4dcaf https://www.encodeproject.org/files/ENCFF000RTE/@@download/ENCFF000RTE.bigWig archived s3://encode-public/2012/07/26/a7c6ac09-d7a3-43c3-8b11-fd4a2e29a83f/ENCFF000RTE.bigWig Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000RTF fastq fastq reads ENCSR000DLP Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 single-ended 421363230 Vishwanath Iyer, UTA 44654f51fcfcec8d2dd4edcd880fb533 https://www.encodeproject.org/files/ENCFF000RTF/@@download/ENCFF000RTF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/d57024e4-dd38-4388-a8cc-724c8fc0bf08/ENCFF000RTF.fastq.gz mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF721BCM bam bam unfiltered alignments GRCh38 ENCSR000DLP Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF643CGH/, /files/ENCFF000RTF/ 552997618 ENCODE Processing Pipeline aef4f7d41b27dea2b9831039201de7ac https://www.encodeproject.org/files/ENCFF721BCM/@@download/ENCFF721BCM.bam released s3://encode-public/2016/10/26/566c1f30-4ffa-4c62-bef2-a839b14d03a4/ENCFF721BCM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF949IKS bam bam alignments GRCh38 ENCSR000DLP Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF643CGH/, /files/ENCFF000RTF/ 285055413 ENCODE Processing Pipeline 0d8929a61384b3e47adaf8517227697b https://www.encodeproject.org/files/ENCFF949IKS/@@download/ENCFF949IKS.bam released s3://encode-public/2016/10/26/5a9c4721-859b-4657-b916-d7e7a3d1c5aa/ENCFF949IKS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF756QEV bam bam unfiltered alignments GRCh38 ENCSR000DLP Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF110MCL/, /files/ENCFF000RTF/ 540594867 ENCODE Processing Pipeline 840b030fca624862394386e8bf9685f2 https://www.encodeproject.org/files/ENCFF756QEV/@@download/ENCFF756QEV.bam released s3://encode-public/2020/09/03/f4ec3e9f-7a07-4914-abc5-bcea19135b54/ENCFF756QEV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF392LMP bam bam alignments GRCh38 ENCSR000DLP Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF110MCL/, /files/ENCFF000RTF/ 317140606 ENCODE Processing Pipeline 862248105e645b74898e42dd635962d5 https://www.encodeproject.org/files/ENCFF392LMP/@@download/ENCFF392LMP.bam released s3://encode-public/2020/09/03/cf0f27bc-4eca-4ef5-b2a2-42a7f0c54c14/ENCFF392LMP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF333MIQ fastq fastq reads ENCSR908SMR Control ChIP-seq /worm-donors/ENCDO490RAU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191621/'], '@type': ['Target', 'Item'], 'name': 'ceh-31-celegans', 'label': 'ceh-31', '@id': '/targets/ceh-31-celegans/', 'title': 'ceh-31 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e3d3f43-c2ff-449f-b9ba-2334b5d8efab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 649308150 Kevin White, UChicago 3e0bb771dbfb6fc5ce7e11adca17a01e https://www.encodeproject.org/files/ENCFF333MIQ/@@download/ENCFF333MIQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/b18f4b00-f731-484e-a4ca-36c1bf73d886/ENCFF333MIQ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF354FEF bam bam alignments ce10 ENCSR908SMR Control ChIP-seq /worm-donors/ENCDO490RAU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191621/'], '@type': ['Target', 'Item'], 'name': 'ceh-31-celegans', 'label': 'ceh-31', '@id': '/targets/ceh-31-celegans/', 'title': 'ceh-31 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e3d3f43-c2ff-449f-b9ba-2334b5d8efab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF333MIQ/ 943490377 Kevin White, UChicago 8038c3bbc5d2f14062a85dbb977c87ec https://www.encodeproject.org/files/ENCFF354FEF/@@download/ENCFF354FEF.bam released s3://encode-public/2015/08/19/177bdd26-3dc1-4498-b34b-093c3446f471/ENCFF354FEF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF181TVG bigWig bigWig read-depth normalized signal ce10 ENCSR908SMR Control ChIP-seq /worm-donors/ENCDO490RAU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191621/'], '@type': ['Target', 'Item'], 'name': 'ceh-31-celegans', 'label': 'ceh-31', '@id': '/targets/ceh-31-celegans/', 'title': 'ceh-31 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e3d3f43-c2ff-449f-b9ba-2334b5d8efab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF354FEF/ 10022033 Kevin White, UChicago b2e6a1c47de60e1bac709b213ad4e584 https://www.encodeproject.org/files/ENCFF181TVG/@@download/ENCFF181TVG.bigWig released s3://encode-public/2015/10/02/168e144a-cee0-41f7-b3bb-a3a832f53e8b/ENCFF181TVG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF763JZB bigWig bigWig signal of unique reads ce10 ENCSR908SMR Control ChIP-seq /worm-donors/ENCDO490RAU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191621/'], '@type': ['Target', 'Item'], 'name': 'ceh-31-celegans', 'label': 'ceh-31', '@id': '/targets/ceh-31-celegans/', 'title': 'ceh-31 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e3d3f43-c2ff-449f-b9ba-2334b5d8efab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF354FEF/ 9973612 Kevin White, UChicago 3374aa83a2ac8863060e9f5398d07201 https://www.encodeproject.org/files/ENCFF763JZB/@@download/ENCFF763JZB.bigWig released s3://encode-public/2015/10/02/aa986f5e-7b25-4ce5-b5c7-4a7e63b2750a/ENCFF763JZB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF389OGL bam bam alignments ce11 ENCSR908SMR Control ChIP-seq /worm-donors/ENCDO490RAU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191621/'], '@type': ['Target', 'Item'], 'name': 'ceh-31-celegans', 'label': 'ceh-31', '@id': '/targets/ceh-31-celegans/', 'title': 'ceh-31 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e3d3f43-c2ff-449f-b9ba-2334b5d8efab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF333MIQ/ 944296754 Kevin White, UChicago fca5cab17a588c1a8e66c02602b6d910 https://www.encodeproject.org/files/ENCFF389OGL/@@download/ENCFF389OGL.bam released s3://encode-public/2016/01/16/9e67707a-f968-4489-9cc6-8ff58bc1b324/ENCFF389OGL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF514EBJ bigWig bigWig signal of unique reads ce11 ENCSR908SMR Control ChIP-seq /worm-donors/ENCDO490RAU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191621/'], '@type': ['Target', 'Item'], 'name': 'ceh-31-celegans', 'label': 'ceh-31', '@id': '/targets/ceh-31-celegans/', 'title': 'ceh-31 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e3d3f43-c2ff-449f-b9ba-2334b5d8efab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF389OGL/ 9968768 Kevin White, UChicago db8057711f15dcfd8a2616e711b0ff06 https://www.encodeproject.org/files/ENCFF514EBJ/@@download/ENCFF514EBJ.bigWig released s3://encode-public/2016/02/03/98e415ec-0c9a-41b6-a67a-d66ad1511531/ENCFF514EBJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF535VDC bigWig bigWig read-depth normalized signal ce11 ENCSR908SMR Control ChIP-seq /worm-donors/ENCDO490RAU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191621/'], '@type': ['Target', 'Item'], 'name': 'ceh-31-celegans', 'label': 'ceh-31', '@id': '/targets/ceh-31-celegans/', 'title': 'ceh-31 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9e3d3f43-c2ff-449f-b9ba-2334b5d8efab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF389OGL/ 10011859 Kevin White, UChicago 1f9128a90e65bee8ba1f65a9b3f502f4 https://www.encodeproject.org/files/ENCFF535VDC/@@download/ENCFF535VDC.bigWig released s3://encode-public/2016/02/03/264280ec-8164-4555-9651-bf6a330ef582/ENCFF535VDC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF000PBI bam bam alignments hg19 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000PBO/ 1222693684 Richard Myers, HAIB d59b2d1e31434314fd8347e563e97d81 https://www.encodeproject.org/files/ENCFF000PBI/@@download/ENCFF000PBI.bam archived s3://encode-public/2012/01/23/75e45766-77ed-49bb-8c2a-7e607a6c96a2/ENCFF000PBI.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000PBJ bigWig bigWig raw signal hg19 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 5483203 Richard Myers, HAIB 88d29950790aae3fb390c0762b457732 https://www.encodeproject.org/files/ENCFF000PBJ/@@download/ENCFF000PBJ.bigWig archived s3://encode-public/2012/01/23/93af7864-d5d4-49ca-8c67-1a59657c790b/ENCFF000PBJ.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000PBO fastq fastq reads ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1068011158 Richard Myers, HAIB d83c0e62a446efef5daa8ff88f610e04 https://www.encodeproject.org/files/ENCFF000PBO/@@download/ENCFF000PBO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/c1b15ea6-27e1-4a57-90c6-01331731af89/ENCFF000PBO.fastq.gz mild to moderate bottlenecking, low read length ENCFF023KXJ bam bam unfiltered alignments GRCh38 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000PBO/ 1442025505 ENCODE Processing Pipeline 90c6f5e5470d150a771648a4b63266f7 https://www.encodeproject.org/files/ENCFF023KXJ/@@download/ENCFF023KXJ.bam released s3://encode-public/2016/10/26/2328f2f7-623c-49bf-b594-0fcf46e0fdfb/ENCFF023KXJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF769ESE bam bam alignments GRCh38 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000PBO/ 955811748 ENCODE Processing Pipeline 9a258ac2e132e609b4f5a28cc4c41c67 https://www.encodeproject.org/files/ENCFF769ESE/@@download/ENCFF769ESE.bam released s3://encode-public/2016/10/26/cfd29d35-6f7e-4d12-82dc-b80e842d09d4/ENCFF769ESE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF998KND bam bam unfiltered alignments hg19 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000PBO/ 1438977472 ENCODE Processing Pipeline d18fc0f4ccd9c18fa2c1cd1a78ae26a5 https://www.encodeproject.org/files/ENCFF998KND/@@download/ENCFF998KND.bam released s3://encode-public/2016/11/13/ba870c9a-95c7-41e4-8103-135744ac09c5/ENCFF998KND.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF280GWX bam bam alignments hg19 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000PBO/ 955828537 ENCODE Processing Pipeline f99dfce1b52367132da586358887ac94 https://www.encodeproject.org/files/ENCFF280GWX/@@download/ENCFF280GWX.bam released s3://encode-public/2016/11/13/7a7abcee-d949-4c51-b54a-cd3652458857/ENCFF280GWX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF501FYY bam bam unfiltered alignments GRCh38 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000PBO/, /files/ENCFF110MCL/ 1409535399 ENCODE Processing Pipeline e503b8501d948cbbc95221383ca0ce90 https://www.encodeproject.org/files/ENCFF501FYY/@@download/ENCFF501FYY.bam released s3://encode-public/2020/10/28/ad2fa7fc-3299-463b-ba67-091a8e8e6e06/ENCFF501FYY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF261CBV bam bam alignments GRCh38 ENCSR000BMK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000PBO/, /files/ENCFF110MCL/ 1038805836 ENCODE Processing Pipeline b6d97e03400b7c2db1772696a5eaad2b https://www.encodeproject.org/files/ENCFF261CBV/@@download/ENCFF261CBV.bam released s3://encode-public/2020/10/28/94774bbb-710c-4e9c-b5d8-42b0f9d6eb01/ENCFF261CBV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF001KWZ bam bam alignments mm9 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KXE/ 146032491 Bing Ren, UCSD e7b9a727c230a3e10c3e0f24a415f914 https://www.encodeproject.org/files/ENCFF001KWZ/@@download/ENCFF001KWZ.bam archived s3://encode-public/2011/12/23/995673db-7e0f-4953-aa9b-0b5d3bd1e06c/ENCFF001KWZ.bam Lab custom mm9 archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF001KXA bam bam alignments mm9 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KXN/ 199299535 Bing Ren, UCSD 2d36e017e6dee39a41b74ed4debdcffe https://www.encodeproject.org/files/ENCFF001KXA/@@download/ENCFF001KXA.bam archived s3://encode-public/2011/12/23/8ccea0e5-a968-45a9-bc0f-dd9edc0d4020/ENCFF001KXA.bam Lab custom mm9 archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF001KXD bigWig bigWig signal mm9 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KWZ/, /files/ENCFF001KXA/ 75907686 Bing Ren, UCSD bff645d73f0e4e48807a4499a54e07ed https://www.encodeproject.org/files/ENCFF001KXD/@@download/ENCFF001KXD.bigWig archived s3://encode-public/2011/12/23/97a326a2-40fe-4300-88ff-733dd36e5aea/ENCFF001KXD.bigWig Lab custom mm9 archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF001KXE fastq fastq reads ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 single-ended 205819642 Bing Ren, UCSD 1e3717575bcd495cdffc88f35c8c4228 https://www.encodeproject.org/files/ENCFF001KXE/@@download/ENCFF001KXE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/a609d5f7-b065-49ab-863e-34650fe0fef1/ENCFF001KXE.fastq.gz moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF001KXN fastq fastq reads ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 single-ended 264821992 Bing Ren, UCSD 857b39c6a3768ce97f6f467a82fd516d https://www.encodeproject.org/files/ENCFF001KXN/@@download/ENCFF001KXN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/2f5a92f5-efaf-4196-8591-39d908a82d5e/ENCFF001KXN.fastq.gz moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF221MKR bam bam unfiltered alignments mm10-minimal ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KXN/, /files/ENCFF806TVZ/ 313271308 J. Michael Cherry, Stanford 354ada32bdf655fea7cb20ac1cce0efd https://www.encodeproject.org/files/ENCFF221MKR/@@download/ENCFF221MKR.bam archived s3://encode-public/2015/02/04/e4481805-ee69-4481-8e68-15a25ae83907/ENCFF221MKR.bam ENCODE3 mm10-minimal archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF372END bam bam unfiltered alignments mm10-minimal ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KXE/, /files/ENCFF806TVZ/ 232364187 J. Michael Cherry, Stanford aaaa1ea63612de92634d601dcac204cb https://www.encodeproject.org/files/ENCFF372END/@@download/ENCFF372END.bam archived s3://encode-public/2015/02/04/6dbd6919-393e-4fea-af34-98747f71424f/ENCFF372END.bam ENCODE3 mm10-minimal archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF288QPC bam bam alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KXN/ 202154066 ENCODE Processing Pipeline 6372c05db61cf5c5a040faaf4aaccb14 https://www.encodeproject.org/files/ENCFF288QPC/@@download/ENCFF288QPC.bam released s3://encode-public/2016/04/28/be074162-5765-45ba-999e-5e776032ba0f/ENCFF288QPC.bam ENCODE3 mm10 archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF942MHC bam bam alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KXE/ 132905874 ENCODE Processing Pipeline b91c8926bd4401bdeca970a99ffe3de1 https://www.encodeproject.org/files/ENCFF942MHC/@@download/ENCFF942MHC.bam released s3://encode-public/2016/04/28/46f0024d-eb7d-4944-a0f5-07c136918bac/ENCFF942MHC.bam ENCODE3 mm10 archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF161EFY bam bam unfiltered alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KXE/ 232719953 ENCODE Processing Pipeline 614ee0b8e89915c9a5502fd600342eb8 https://www.encodeproject.org/files/ENCFF161EFY/@@download/ENCFF161EFY.bam released s3://encode-public/2016/07/01/7eb6488d-81f6-4d27-8cb1-f670a6286390/ENCFF161EFY.bam ENCODE3 mm10 archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF453DXT bam bam unfiltered alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KXN/ 313840294 ENCODE Processing Pipeline eb293a250825b585c049eb1f916f9b04 https://www.encodeproject.org/files/ENCFF453DXT/@@download/ENCFF453DXT.bam released s3://encode-public/2016/07/01/0df55b39-4925-46e9-a7e3-e389240a91e1/ENCFF453DXT.bam ENCODE3 mm10 archived moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF123CMH bam bam unfiltered alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KXN/ 306519934 ENCODE Processing Pipeline 86c7f1006fa2c0ccb1902a222f0096bf https://www.encodeproject.org/files/ENCFF123CMH/@@download/ENCFF123CMH.bam released s3://encode-public/2020/10/12/5c5e15d2-08d2-47b8-9fce-3cdcd1148715/ENCFF123CMH.bam ENCODE4 v1.5.1 mm10 released moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF703HEZ bam bam alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KXE/ 142764251 ENCODE Processing Pipeline 0c3f649dd3a555972fe17045ca834486 https://www.encodeproject.org/files/ENCFF703HEZ/@@download/ENCFF703HEZ.bam released s3://encode-public/2020/10/12/26aabb75-c47f-4b10-99ae-557be844f5c4/ENCFF703HEZ.bam ENCODE4 v1.5.1 mm10 released moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF632RBW bam bam alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KXN/ 217467849 ENCODE Processing Pipeline d8416c1acb25818be0934e84a319f029 https://www.encodeproject.org/files/ENCFF632RBW/@@download/ENCFF632RBW.bam released s3://encode-public/2020/10/12/268b522a-baa2-4784-b335-21a00900a36a/ENCFF632RBW.bam ENCODE4 v1.5.1 mm10 released moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF103LGX bam bam unfiltered alignments mm10 ENCSR000CCX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000473 testis tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KXE/ 228161186 ENCODE Processing Pipeline 438d0663de6f4f604ba9ec2c072adb79 https://www.encodeproject.org/files/ENCFF103LGX/@@download/ENCFF103LGX.bam released s3://encode-public/2020/10/12/133ceddb-1c92-4a55-b906-4d17b742124b/ENCFF103LGX.bam ENCODE4 v1.5.1 mm10 released moderate library complexity, low read length insufficient read depth extremely low read depth ENCFF000WPF bam bam alignments hg19 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WPQ/ 339990168 Michael Snyder, Stanford aa52ca6f40839090a2d58cd616ca0c8d https://www.encodeproject.org/files/ENCFF000WPF/@@download/ENCFF000WPF.bam archived s3://encode-public/2012/07/01/850851fc-a863-41f9-a244-19efdbaba1e6/ENCFF000WPF.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WPG bam bam alignments hg19 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WPN/ 237274712 Michael Snyder, Stanford a76400cf9266a2faff8ee4cbcfe517b4 https://www.encodeproject.org/files/ENCFF000WPG/@@download/ENCFF000WPG.bam archived s3://encode-public/2012/07/01/085eeba4-d22f-4b0a-aff5-de24d90d9d38/ENCFF000WPG.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WPH bigWig bigWig signal hg19 ENCSR000EBL Control ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 330152644 Michael Snyder, Stanford 9876bb9253e189be8b05f116ee620e89 https://www.encodeproject.org/files/ENCFF000WPH/@@download/ENCFF000WPH.bigWig archived s3://encode-public/2012/07/01/528bee81-5ab9-4633-923e-adee3c5f0e77/ENCFF000WPH.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WPN fastq fastq reads ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 183473610 Michael Snyder, Stanford a8d8398521071758c7b90570d4fd8581 https://www.encodeproject.org/files/ENCFF000WPN/@@download/ENCFF000WPN.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/7e9940ec-55e8-48ff-95b9-13ad729012e8/ENCFF000WPN.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF000WPQ fastq fastq reads ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 257778152 Michael Snyder, Stanford 0d4750d0ea257bf509af304b00b40915 https://www.encodeproject.org/files/ENCFF000WPQ/@@download/ENCFF000WPQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/160266eb-742c-4e3a-8093-898084b2bb7f/ENCFF000WPQ.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF650JUF bam bam unfiltered alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WPN/ 238279338 ENCODE Processing Pipeline 0307a8da5d1a145140da721a15c3cf9f https://www.encodeproject.org/files/ENCFF650JUF/@@download/ENCFF650JUF.bam released s3://encode-public/2016/10/26/1cd5ac2d-2687-4fe1-851a-08504e536e8a/ENCFF650JUF.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF519AXQ bam bam unfiltered alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WPQ/, /files/ENCFF643CGH/ 341740049 ENCODE Processing Pipeline 92f89bb20b8d77a696afa63c7941fd66 https://www.encodeproject.org/files/ENCFF519AXQ/@@download/ENCFF519AXQ.bam released s3://encode-public/2016/10/26/8df1f4a5-31c2-4492-9a40-2bb5a17136c6/ENCFF519AXQ.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF100CXY bam bam alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WPQ/, /files/ENCFF643CGH/ 209947551 ENCODE Processing Pipeline a55c11a8b44e6d3fd68c95e3e8c590b7 https://www.encodeproject.org/files/ENCFF100CXY/@@download/ENCFF100CXY.bam released s3://encode-public/2016/10/26/b538b35d-cb30-4144-9a9f-497f28af4451/ENCFF100CXY.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF367XZL bam bam alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WPN/ 153008364 ENCODE Processing Pipeline 98948920f3707dd508ccbb436fc1bd13 https://www.encodeproject.org/files/ENCFF367XZL/@@download/ENCFF367XZL.bam released s3://encode-public/2016/10/26/a8ae6d30-c77f-42b6-9eaf-5462dd3b3f33/ENCFF367XZL.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF307CUS bam bam unfiltered alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WPQ/, /files/ENCFF110MCL/ 324369014 ENCODE Processing Pipeline 9f09dd1f5428b4ea2b4e110cb733b36a https://www.encodeproject.org/files/ENCFF307CUS/@@download/ENCFF307CUS.bam released s3://encode-public/2020/10/27/38286789-7689-46bb-9b9b-a11735c509d0/ENCFF307CUS.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF714YIP bam bam unfiltered alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WPN/, /files/ENCFF110MCL/ 225994806 ENCODE Processing Pipeline 1a46bdfbab3d8e1052181e4dda3516d7 https://www.encodeproject.org/files/ENCFF714YIP/@@download/ENCFF714YIP.bam released s3://encode-public/2020/10/27/eddaf349-3b64-40df-833d-4e8cd9baa16e/ENCFF714YIP.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF430GXF bam bam alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WPQ/, /files/ENCFF110MCL/ 218828104 ENCODE Processing Pipeline b963cfde883b70c255ed0f6dccc44bc8 https://www.encodeproject.org/files/ENCFF430GXF/@@download/ENCFF430GXF.bam released s3://encode-public/2020/10/27/d0de59db-c08e-49aa-9bb4-b5172229300a/ENCFF430GXF.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF377QKO bam bam alignments GRCh38 ENCSR000EBL Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WPN/, /files/ENCFF110MCL/ 158121544 ENCODE Processing Pipeline 68b15f3dd51f92c8226c004700ec614b https://www.encodeproject.org/files/ENCFF377QKO/@@download/ENCFF377QKO.bam released s3://encode-public/2020/10/27/35b313e6-ef93-4bb7-b412-4a8067afd5f8/ENCFF377QKO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF287YNK bam bam unfiltered alignments hg19 ENCSR716SYG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 9 9_2 50 /files/ENCFF807MUK/, /files/ENCFF876NBT/ 3096160474 ENCODE Processing Pipeline cb907a0c324ace222954a176c9999c59 https://www.encodeproject.org/files/ENCFF287YNK/@@download/ENCFF287YNK.bam released s3://encode-public/2018/02/21/9d890ff0-64af-458a-8ab3-796995af05c3/ENCFF287YNK.bam ENCODE3 hg19 archived ENCFF876NBT fastq fastq reads ENCSR716SYG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 9 9_2 50 single-ended 2899039869 Richard Myers, HAIB daeed5b29b158835ac855d9ea6aa790c SRA:SRR5339185 https://www.encodeproject.org/files/ENCFF876NBT/@@download/ENCFF876NBT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/17/96df473a-c616-4657-a9f5-6e4d52b0e5f6/ENCFF876NBT.fastq.gz ENCFF994YBV bam bam alignments hg19 ENCSR716SYG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 9 9_2 50 /files/ENCFF807MUK/, /files/ENCFF876NBT/ 2340089466 ENCODE Processing Pipeline 50349709d927e151dc0f5eb65cf1659d https://www.encodeproject.org/files/ENCFF994YBV/@@download/ENCFF994YBV.bam released s3://encode-public/2015/11/17/6ebc36a3-fec0-4bb6-9a2b-b080f434e0b9/ENCFF994YBV.bam ENCODE3 hg19 archived ENCFF327YCT bam bam unfiltered alignments GRCh38 ENCSR716SYG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 9 9_2 50 /files/ENCFF643CGH/, /files/ENCFF876NBT/ 3108127409 ENCODE Processing Pipeline fcacd24077c17f0bbc9ceb85ba927ede https://www.encodeproject.org/files/ENCFF327YCT/@@download/ENCFF327YCT.bam released s3://encode-public/2016/05/06/4e8987ba-bc53-43aa-ba22-a514295bc95e/ENCFF327YCT.bam ENCODE3 GRCh38 archived ENCFF894EOG bam bam alignments GRCh38 ENCSR716SYG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 9 9_2 50 /files/ENCFF643CGH/, /files/ENCFF876NBT/ 2340763363 ENCODE Processing Pipeline 26c79a838286f121867922e5fb0783d9 https://www.encodeproject.org/files/ENCFF894EOG/@@download/ENCFF894EOG.bam released s3://encode-public/2016/05/06/025071a4-b5b1-446e-ad20-ac3427ca0131/ENCFF894EOG.bam ENCODE3 GRCh38 archived ENCFF877JXW bam bam unfiltered alignments GRCh38 ENCSR716SYG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 9 9_2 50 /files/ENCFF110MCL/, /files/ENCFF876NBT/ 3079697920 ENCODE Processing Pipeline bf75d6f352000192d175ac426aaaa170 https://www.encodeproject.org/files/ENCFF877JXW/@@download/ENCFF877JXW.bam released s3://encode-public/2020/06/06/63c5e855-065e-4cdc-82fd-3236835b4298/ENCFF877JXW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF938TRX bam bam alignments GRCh38 ENCSR716SYG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 9 9_2 50 /files/ENCFF110MCL/, /files/ENCFF876NBT/ 2432288583 ENCODE Processing Pipeline 2cee9c1349b934a70852fbec5c8f0b4b https://www.encodeproject.org/files/ENCFF938TRX/@@download/ENCFF938TRX.bam released s3://encode-public/2020/06/06/4b33173d-36b9-492d-86d4-739fe2589b26/ENCFF938TRX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF000CCJ bam bam alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000CCQ/ 426028494 Bradley Bernstein, Broad f114d35d42aae0b6627cb5f4adfcd10e https://www.encodeproject.org/files/ENCFF000CCJ/@@download/ENCFF000CCJ.bam archived s3://encode-public/2010/11/16/482d6944-a232-454c-8e7d-b55f3ff4c4c6/ENCFF000CCJ.bam Lab custom hg19 archived low read length insufficient read depth ENCFF000CCL bigWig bigWig signal hg19 ENCSR000AUU Control ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 520799498 Bradley Bernstein, Broad 94c1e850b02a774b4d4035eed18de96f https://www.encodeproject.org/files/ENCFF000CCL/@@download/ENCFF000CCL.bigWig archived s3://encode-public/2010/11/16/7190c98b-63c9-4592-a709-122c59318042/ENCFF000CCL.bigWig Lab custom hg19 archived low read length insufficient read depth ENCFF000CCM bam bam alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CCW/ 1731344400 Bradley Bernstein, Broad e689bebac8b21e8fe3a3d2e4a559ec80 https://www.encodeproject.org/files/ENCFF000CCM/@@download/ENCFF000CCM.bam archived s3://encode-public/2010/11/16/20371a74-94b0-47c5-bb48-91fdd7fe35e0/ENCFF000CCM.bam Lab custom hg19 archived low read length insufficient read depth ENCFF000CCQ fastq fastq reads ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 single-ended 407158540 Bradley Bernstein, Broad 00d2d8332671865e185a5628a954b7a6 https://www.encodeproject.org/files/ENCFF000CCQ/@@download/ENCFF000CCQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2010/11/16/b36b0e21-45fe-429c-82d4-bd976d9359e6/ENCFF000CCQ.fastq.gz low read length insufficient read depth ENCFF000CCW fastq fastq reads ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 single-ended 1726824232 Bradley Bernstein, Broad 897c9a9295404b345fe7b34dd9c3e1c5 https://www.encodeproject.org/files/ENCFF000CCW/@@download/ENCFF000CCW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2010/11/16/e30f3c07-5830-479f-b89a-1ab11afc487a/ENCFF000CCW.fastq.gz low read length insufficient read depth ENCFF383QCX bam bam unfiltered alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000CCQ/, /files/ENCFF643CGH/ 546862615 ENCODE Processing Pipeline ff31abd816b1d8aa3c9627efd27cd0b1 https://www.encodeproject.org/files/ENCFF383QCX/@@download/ENCFF383QCX.bam released s3://encode-public/2016/07/13/bc9bbd01-9d1e-4d22-b3bb-b73ff34a7e18/ENCFF383QCX.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF865NTT bam bam alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000CCQ/, /files/ENCFF643CGH/ 378038874 ENCODE Processing Pipeline 3ab82215ac9eb161eb789be79480c050 https://www.encodeproject.org/files/ENCFF865NTT/@@download/ENCFF865NTT.bam released s3://encode-public/2016/07/13/11c3f6da-0f45-4c78-9fd0-04c40cb28881/ENCFF865NTT.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF545JWL bam bam unfiltered alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000CCW/ 2214518341 ENCODE Processing Pipeline 4c270cc435b1f024ed879f6384cd048e https://www.encodeproject.org/files/ENCFF545JWL/@@download/ENCFF545JWL.bam released s3://encode-public/2016/07/13/63c5891e-4910-415b-932e-23449daaf7ec/ENCFF545JWL.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF075YNC bam bam alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000CCW/ 1388234075 ENCODE Processing Pipeline ef90040093699b511e7f66cf48ddc6f5 https://www.encodeproject.org/files/ENCFF075YNC/@@download/ENCFF075YNC.bam released s3://encode-public/2016/07/13/4a427954-901c-404f-a36e-3032e1efc89b/ENCFF075YNC.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF695ZNW tagAlign tagAlign alignments hg19 ENCSR000AUU Control ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 204426972 Anshul Kundaje, Stanford 2d8e6125982f039073b07b16a0e2640a https://www.encodeproject.org/files/ENCFF695ZNW/@@download/ENCFF695ZNW.tagAlign.gz archived s3://encode-public/2016/07/19/c785e261-148e-4cc0-8379-1b898f81440d/ENCFF695ZNW.tagAlign.gz Lab custom hg19 archived low read length insufficient read depth ENCFF914LSY bam bam unfiltered alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000CCQ/, /files/ENCFF807MUK/ 544209280 ENCODE Processing Pipeline 6e63c27089363a6faec3372bbe4832e3 https://www.encodeproject.org/files/ENCFF914LSY/@@download/ENCFF914LSY.bam released s3://encode-public/2017/04/10/c516db48-9018-4e56-ac0a-0f5785593c50/ENCFF914LSY.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF572RFU bam bam alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000CCQ/, /files/ENCFF807MUK/ 378214771 ENCODE Processing Pipeline 0402f18e90a436951551075f926ff39c https://www.encodeproject.org/files/ENCFF572RFU/@@download/ENCFF572RFU.bam released s3://encode-public/2017/04/10/bbba9e64-3608-474a-81b0-85dcbc48d7ac/ENCFF572RFU.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF701QJX bam bam unfiltered alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000CCW/ 2202000947 ENCODE Processing Pipeline 0de727b22c712d154761f716c8a8e861 https://www.encodeproject.org/files/ENCFF701QJX/@@download/ENCFF701QJX.bam released s3://encode-public/2017/04/10/7dddbfcf-427c-4291-8f2f-1cf018ee2452/ENCFF701QJX.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF730IJS bam bam alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000CCW/ 1388650603 ENCODE Processing Pipeline 8f35f2f0fbd0bb767bc415b821a6d3a2 https://www.encodeproject.org/files/ENCFF730IJS/@@download/ENCFF730IJS.bam released s3://encode-public/2017/04/10/7e134555-ffe8-48ed-86c4-71feabd17298/ENCFF730IJS.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF692GVG fastq fastq reads ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 single-ended 961963444 Bradley Bernstein, Broad 1142ec490cb799cb67bf4abfb1c18635 https://www.encodeproject.org/files/ENCFF692GVG/@@download/ENCFF692GVG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/82016d14-2947-4f19-9fad-e4e7e74fffea/ENCFF692GVG.fastq.gz low read length insufficient read depth ENCFF244XQF fastq fastq reads ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 single-ended 955118901 Bradley Bernstein, Broad c1d47814a0130c489acf85930c7f7aac https://www.encodeproject.org/files/ENCFF244XQF/@@download/ENCFF244XQF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/0bd1c3df-9549-4a10-ac6c-9b9c3fe91fcc/ENCFF244XQF.fastq.gz low read length insufficient read depth ENCFF365LFR bam bam unfiltered alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF244XQF/, /files/ENCFF807MUK/, /files/ENCFF692GVG/ 2442895174 ENCODE Processing Pipeline 83b3af8cbe7692077cf0ff85ad270483 https://www.encodeproject.org/files/ENCFF365LFR/@@download/ENCFF365LFR.bam released s3://encode-public/2017/04/12/d187d107-dacb-4aa3-bc2e-a4dc3a2df02b/ENCFF365LFR.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF020SWF bam bam alignments hg19 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF244XQF/, /files/ENCFF807MUK/, /files/ENCFF692GVG/ 1689033533 ENCODE Processing Pipeline 8065d3ea156e208b4c78a3c740283654 https://www.encodeproject.org/files/ENCFF020SWF/@@download/ENCFF020SWF.bam released s3://encode-public/2017/04/12/e4e3655d-3359-4bc8-9194-890bc4ec4613/ENCFF020SWF.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF894MBE bam bam alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF244XQF/, /files/ENCFF643CGH/, /files/ENCFF692GVG/ 1688691845 ENCODE Processing Pipeline f67c289c0be5958abc74e5ebce5cd4d7 https://www.encodeproject.org/files/ENCFF894MBE/@@download/ENCFF894MBE.bam released s3://encode-public/2017/04/12/ff0fcb4c-4dc5-49cd-87b8-dd8945060396/ENCFF894MBE.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF172HPC bam bam unfiltered alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF244XQF/, /files/ENCFF643CGH/, /files/ENCFF692GVG/ 2457684977 ENCODE Processing Pipeline 1ee30e72b97b69e57bf8dd663bdc42eb https://www.encodeproject.org/files/ENCFF172HPC/@@download/ENCFF172HPC.bam released s3://encode-public/2017/04/12/08f78452-6e10-4363-b569-0e33c981b91a/ENCFF172HPC.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF421DXL bam bam alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000CCW/ 1505012221 ENCODE Processing Pipeline f70b536834d6cc3c89c388f148474365 https://www.encodeproject.org/files/ENCFF421DXL/@@download/ENCFF421DXL.bam released s3://encode-public/2020/09/03/40d80d16-6d5e-4880-8de5-974f3c3cba09/ENCFF421DXL.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF662FMZ bam bam alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000CCQ/ 414068399 ENCODE Processing Pipeline f69f28ccb43995b622c62f4388260a37 https://www.encodeproject.org/files/ENCFF662FMZ/@@download/ENCFF662FMZ.bam released s3://encode-public/2020/09/03/2f7cba45-d3de-4aad-af01-15c52296b628/ENCFF662FMZ.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF531CAD bam bam alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF692GVG/, /files/ENCFF244XQF/ 1833647487 ENCODE Processing Pipeline c91a2af6c62dabb25a7c0672e147b1e0 https://www.encodeproject.org/files/ENCFF531CAD/@@download/ENCFF531CAD.bam released s3://encode-public/2020/09/03/a270da9d-ef09-4326-9ac2-3f5550253239/ENCFF531CAD.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF458HIF bam bam unfiltered alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000CCW/ 2154463600 ENCODE Processing Pipeline 9c4a84d058618c4b38cc7c4938b19bc7 https://www.encodeproject.org/files/ENCFF458HIF/@@download/ENCFF458HIF.bam released s3://encode-public/2020/09/03/d076d5cd-72d6-47f5-9d6e-58b3deff9732/ENCFF458HIF.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF294GRN bam bam unfiltered alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000CCQ/ 531288601 ENCODE Processing Pipeline 6368f8fd2a08a4a07efb793043232136 https://www.encodeproject.org/files/ENCFF294GRN/@@download/ENCFF294GRN.bam released s3://encode-public/2020/09/03/15c85c05-da22-47d5-9d00-eb26b9e38721/ENCFF294GRN.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF655WMB bam bam unfiltered alignments GRCh38 ENCSR000AUU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF692GVG/, /files/ENCFF244XQF/ 2387735312 ENCODE Processing Pipeline 16da9d43094868ca74412557eee4b82e https://www.encodeproject.org/files/ENCFF655WMB/@@download/ENCFF655WMB.bam released s3://encode-public/2020/09/03/1b992508-6567-465d-b172-c4fdf5f0dcd1/ENCFF655WMB.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF000WPJ bam bam alignments hg19 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WPT/ 214405584 Michael Snyder, Stanford 5aa8c9fae412a9964dbb4e1ff93dac96 https://www.encodeproject.org/files/ENCFF000WPJ/@@download/ENCFF000WPJ.bam archived s3://encode-public/2012/07/01/3704fd9b-2671-4415-a922-709781116a2c/ENCFF000WPJ.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WPK bam bam alignments hg19 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WPV/ 219905292 Michael Snyder, Stanford fd1eb0dd71d240f5a638dc7594e0bca5 https://www.encodeproject.org/files/ENCFF000WPK/@@download/ENCFF000WPK.bam archived s3://encode-public/2012/07/01/815003bb-a85d-4c52-9494-866f6b58bbdd/ENCFF000WPK.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WPM bigWig bigWig signal hg19 ENCSR000EBJ Control ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 284081183 Michael Snyder, Stanford bc4cc67bae7bbda2b556cbd7d670900e https://www.encodeproject.org/files/ENCFF000WPM/@@download/ENCFF000WPM.bigWig archived s3://encode-public/2012/07/01/bf521a8a-35c4-4f6f-9928-53f282f26fbd/ENCFF000WPM.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WPT fastq fastq reads ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 168716427 Michael Snyder, Stanford cf0762ef384f6f2208bfc2445d3f8cda https://www.encodeproject.org/files/ENCFF000WPT/@@download/ENCFF000WPT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/8cc21007-88aa-40d6-8fc3-2ced9bb8cf62/ENCFF000WPT.fastq.gz insufficient read length extremely low read depth ENCFF000WPV fastq fastq reads ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 171194037 Michael Snyder, Stanford 86bf2e4e73fa8f2360c3aeb0fe7439c4 https://www.encodeproject.org/files/ENCFF000WPV/@@download/ENCFF000WPV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/533632e1-ecc6-4e65-a0b9-e929e81d5d8c/ENCFF000WPV.fastq.gz insufficient read length extremely low read depth ENCFF021IAB bam bam unfiltered alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WPV/ 220870537 ENCODE Processing Pipeline ec8da06defab9177a21796314a162d7e https://www.encodeproject.org/files/ENCFF021IAB/@@download/ENCFF021IAB.bam released s3://encode-public/2016/10/26/7b8d759d-7658-4698-a401-63248e057d8a/ENCFF021IAB.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF646REM bam bam unfiltered alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WPT/ 215253168 ENCODE Processing Pipeline ffa9f32765b52bb5f0ee9cae96787a22 https://www.encodeproject.org/files/ENCFF646REM/@@download/ENCFF646REM.bam released s3://encode-public/2016/10/26/4d2d5391-0b2a-43f6-b087-55a4291efd16/ENCFF646REM.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF815ZGR bam bam alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WPV/ 139128044 ENCODE Processing Pipeline 575697f1e1b3561f96cfcd892909eb47 https://www.encodeproject.org/files/ENCFF815ZGR/@@download/ENCFF815ZGR.bam released s3://encode-public/2016/10/26/c226805d-f791-4466-83c8-f2b3a342e1a9/ENCFF815ZGR.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF870ZOV bam bam alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WPT/ 137425023 ENCODE Processing Pipeline a94156e1690a8104641de02011f71dd5 https://www.encodeproject.org/files/ENCFF870ZOV/@@download/ENCFF870ZOV.bam released s3://encode-public/2016/10/26/5b1f9457-1066-47bc-a011-e53dddbcab79/ENCFF870ZOV.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF520UGW bam bam unfiltered alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WPV/, /files/ENCFF110MCL/ 208905320 ENCODE Processing Pipeline b7055b26f86c35ea5415dd544d32e731 https://www.encodeproject.org/files/ENCFF520UGW/@@download/ENCFF520UGW.bam released s3://encode-public/2020/10/27/99617cd3-a114-4aa4-a081-7ad3e512c368/ENCFF520UGW.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF604HHJ bam bam alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WPT/ 138397258 ENCODE Processing Pipeline 41d521cece1236b4c1d5ef59df6dd82e https://www.encodeproject.org/files/ENCFF604HHJ/@@download/ENCFF604HHJ.bam released s3://encode-public/2020/10/27/cbb1878a-0511-4fb1-919e-f92e6255b5ee/ENCFF604HHJ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF414RDU bam bam unfiltered alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WPT/ 203840122 ENCODE Processing Pipeline 00b363a9ecf11c30552808a44228c448 https://www.encodeproject.org/files/ENCFF414RDU/@@download/ENCFF414RDU.bam released s3://encode-public/2020/10/27/e3a10074-8357-48d2-9cd1-327c699f6467/ENCFF414RDU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF607DAL bam bam alignments GRCh38 ENCSR000EBJ Control ChIP-seq /human-donors/ENCDO000ACK/ EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WPV/, /files/ENCFF110MCL/ 144789733 ENCODE Processing Pipeline 1e89231dd16ac6e4a82e18c4dacdfe94 https://www.encodeproject.org/files/ENCFF607DAL/@@download/ENCFF607DAL.bam released s3://encode-public/2020/10/27/38b729ae-85f3-40f7-bcfd-ae0476fc0b00/ENCFF607DAL.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF000SCA bam bam alignments hg19 ENCSR000DMX Control ChIP-seq EFO:0005696 D721Med cell line Homo sapiens DNA 2012-08-27 ENCODE see document 50 1009531500 Vishwanath Iyer, UTA f49d51dc0c4f9d27a43acdd7edc10f00 https://www.encodeproject.org/files/ENCFF000SCA/@@download/ENCFF000SCA.bam archived s3://encode-public/2012/07/26/1582feef-5272-4ed9-a631-2e3108b8eb3c/ENCFF000SCA.bam Lab custom hg19 archived mild to moderate bottlenecking insufficient read depth ENCFF000SCB bigWig bigWig signal hg19 ENCSR000DMX Control ChIP-seq EFO:0005696 D721Med cell line Homo sapiens DNA 2012-08-27 ENCODE see document 4248747844 Vishwanath Iyer, UTA 3fc45b2ffa8fcaa55c3f68d8e5b296c3 https://www.encodeproject.org/files/ENCFF000SCB/@@download/ENCFF000SCB.bigWig archived s3://encode-public/2012/07/26/ce6040a5-79b7-4317-8b9d-c6c69719a655/ENCFF000SCB.bigWig Lab custom hg19 archived mild to moderate bottlenecking insufficient read depth ENCFF000SCG fastq fastq reads ENCSR000DMX Control ChIP-seq /human-donors/ENCDO000ACZ/ EFO:0005696 D721Med cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 1066730788 Vishwanath Iyer, UTA e02fb1268f699cbdabeb0a2156c0112f https://www.encodeproject.org/files/ENCFF000SCG/@@download/ENCFF000SCG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/0e996eee-ca88-44d1-b094-1a4dbf627509/ENCFF000SCG.fastq.gz mild to moderate bottlenecking insufficient read depth ENCFF705VYI bam bam unfiltered alignments GRCh38 ENCSR000DMX Control ChIP-seq /human-donors/ENCDO000ACZ/ EFO:0005696 D721Med cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000SCG/ 1243130389 ENCODE Processing Pipeline a34bf56e0c518300d29de2d68e8a92d3 https://www.encodeproject.org/files/ENCFF705VYI/@@download/ENCFF705VYI.bam released s3://encode-public/2016/12/03/2d856d2f-6f06-4eb6-bb4b-79b8f7571209/ENCFF705VYI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking insufficient read depth ENCFF490YUY bam bam unfiltered alignments hg19 ENCSR000DMX Control ChIP-seq /human-donors/ENCDO000ACZ/ EFO:0005696 D721Med cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 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unfiltered alignments GRCh38 ENCSR000DMX Control ChIP-seq /human-donors/ENCDO000ACZ/ EFO:0005696 D721Med cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000SCG/, /files/ENCFF110MCL/ 1260255114 ENCODE Processing Pipeline a28cc07605e6f4de58890344b8171041 https://www.encodeproject.org/files/ENCFF975QQA/@@download/ENCFF975QQA.bam released s3://encode-public/2020/09/03/876b6906-7e7f-494c-8c5b-b57fcfe0359c/ENCFF975QQA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking insufficient read depth ENCFF000WND bigWig bigWig signal hg19 ENCSR000EBE Control ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 367551659 Michael Snyder, Stanford 3d1060abed4d61a5ad69019f0dab3b47 https://www.encodeproject.org/files/ENCFF000WND/@@download/ENCFF000WND.bigWig archived s3://encode-public/2012/07/01/26738b68-781e-4a09-a159-b8726d38b8e1/ENCFF000WND.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000WNG bam bam alignments hg19 ENCSR000EBE Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WNP/ 881039086 Michael Snyder, Stanford 28c8b059b09f27090ef5338546da252f https://www.encodeproject.org/files/ENCFF000WNG/@@download/ENCFF000WNG.bam archived s3://encode-public/2012/07/01/9b64d5f1-7761-4f8f-a771-ba7383647b5d/ENCFF000WNG.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000WNP fastq fastq reads ENCSR000EBE Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 685954792 Michael Snyder, Stanford bab013ccb2306f755ecfcd3458592e88 https://www.encodeproject.org/files/ENCFF000WNP/@@download/ENCFF000WNP.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/8d0c2972-93af-4992-883a-eb58a1023573/ENCFF000WNP.fastq.gz low read depth insufficient read length ENCFF283LWS bam bam unfiltered alignments GRCh38 ENCSR000EBE Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WNP/ 885982182 ENCODE Processing Pipeline 970d83e60622315c370800023639e009 https://www.encodeproject.org/files/ENCFF283LWS/@@download/ENCFF283LWS.bam released s3://encode-public/2016/10/26/6751ceeb-1b3a-4b1a-b102-c11512fdbd33/ENCFF283LWS.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF332PHW bam bam alignments GRCh38 ENCSR000EBE Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WNP/ 554135972 ENCODE Processing Pipeline 52ee74b6c34534aaee558fba81dd5211 https://www.encodeproject.org/files/ENCFF332PHW/@@download/ENCFF332PHW.bam released s3://encode-public/2016/10/26/3c3a906a-15bd-4211-b8bd-1327d4afbc66/ENCFF332PHW.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF280TVR bam bam alignments GRCh38 ENCSR000EBE Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WNP/ 572257748 ENCODE Processing Pipeline 7e30bc58aa279c7720ab17ba659c983b https://www.encodeproject.org/files/ENCFF280TVR/@@download/ENCFF280TVR.bam released s3://encode-public/2020/10/27/673d9376-00f2-4f65-b818-e1db1a4bd921/ENCFF280TVR.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF982VQW bam bam unfiltered alignments GRCh38 ENCSR000EBE Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WNP/ 843248129 ENCODE Processing Pipeline a5ff94ff696653991b515b5c9619475e https://www.encodeproject.org/files/ENCFF982VQW/@@download/ENCFF982VQW.bam released s3://encode-public/2020/10/27/da78112d-da0b-4b86-9199-509ccfba8794/ENCFF982VQW.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF310XZM fastq fastq reads ENCSR421DBB Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 115629695 Michael Snyder, Stanford c86d8a9391d90c768b8d1a30384ba792 https://www.encodeproject.org/files/ENCFF310XZM/@@download/ENCFF310XZM.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/f253f784-4442-4892-a3ae-c7f82b127871/ENCFF310XZM.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF394CCO fastq fastq reads ENCSR421DBB Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 95215177 Kevin White, UChicago db74117fdfb804ad6271c5d1b5dd45ae https://www.encodeproject.org/files/ENCFF394CCO/@@download/ENCFF394CCO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF575QQQ/, /files/ENCFF921TGE/ archived s3://encode-public/2016/10/25/4f9f65be-5636-466f-a6b1-bdb454fd2ed5/ENCFF394CCO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF742NQW fastq fastq reads ENCSR325WHF Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2018-03-03 modENCODE 150-350 2 2_1 32 single-ended 162433794 Kevin White, UChicago fd45864c49ecc074b72b822e5d622d40 https://www.encodeproject.org/files/ENCFF245PZX/@@download/ENCFF245PZX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF959WYX/, /files/ENCFF777VXK/ archived s3://encode-public/2016/10/25/38a4240d-a87e-4a72-adbe-d66f0134064f/ENCFF245PZX.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF240POQ fastq fastq reads ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 280506899 Michael Snyder, Stanford ddb3d5d217b1bc129b32683f9522f47c https://www.encodeproject.org/files/ENCFF240POQ/@@download/ENCFF240POQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ef82147c-da52-4fd9-8d03-86cfe2852eda/ENCFF240POQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF955MSR fastq fastq reads ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 275967019 Michael Snyder, Stanford f1436a5e1da142b4c65c26e378cf76f5 https://www.encodeproject.org/files/ENCFF955MSR/@@download/ENCFF955MSR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/10837772-294a-41cd-bac0-b82107e8b2f7/ENCFF955MSR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF968EXE bam bam alignments ce10 ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF955MSR/, /files/ENCFF240POQ/, /files/ENCFF987UMF/ 723546876 Kevin White, UChicago 49ba3c421973c3010a5dbb1c2a3188fa https://www.encodeproject.org/files/ENCFF968EXE/@@download/ENCFF968EXE.bam released s3://encode-public/2016/10/18/de942618-0fe0-4c9f-a1bc-0cd6633d1eb9/ENCFF968EXE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF173MQM bam bam alignments ce11 ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF955MSR/, /files/ENCFF240POQ/, /files/ENCFF586MOL/ 724317597 Kevin White, UChicago c00a2fdcfe3591f441fd446a567efc2e https://www.encodeproject.org/files/ENCFF173MQM/@@download/ENCFF173MQM.bam released s3://encode-public/2016/10/18/9a9183f8-9403-46a0-88b0-27bbda6fe0e6/ENCFF173MQM.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF581DJD bigWig bigWig read-depth normalized signal ce10 ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF968EXE/ 10000950 Kevin White, UChicago 55f933621be988b11509ddeb59b2a125 https://www.encodeproject.org/files/ENCFF581DJD/@@download/ENCFF581DJD.bigWig released s3://encode-public/2016/10/20/9d2609bb-9fd8-46a7-a569-51c53d52ffa8/ENCFF581DJD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF458HVR bigWig bigWig signal of unique reads ce10 ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF968EXE/ 10000676 Kevin White, UChicago a1b4995737747da56caa7e481f66b23b https://www.encodeproject.org/files/ENCFF458HVR/@@download/ENCFF458HVR.bigWig released s3://encode-public/2016/10/20/7da492b7-27ad-4eb8-9393-18ff0a3ddedc/ENCFF458HVR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF367AJN bigWig bigWig signal of unique reads ce11 ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF173MQM/ 9996324 Kevin White, UChicago 5f2a1bcc8bbd1a9f0e875671e80b58ab https://www.encodeproject.org/files/ENCFF367AJN/@@download/ENCFF367AJN.bigWig released s3://encode-public/2016/10/20/3cbf6867-3238-44b3-a152-f7a4343b1f4a/ENCFF367AJN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF813BBM bigWig bigWig read-depth normalized signal ce11 ENCSR181OGO Control ChIP-seq /worm-donors/ENCDO933DBJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175905/'], '@type': ['Target', 'Item'], 'name': 'C16A3.4-celegans', 'label': 'C16A3.4', '@id': '/targets/C16A3.4-celegans/', 'title': 'C16A3.4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3509b737-363a-4abd-a1c3-8da79f25e0f1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF173MQM/ 9995189 Kevin White, UChicago 24fec7e9fcd8e473a70c154c68b03a49 https://www.encodeproject.org/files/ENCFF813BBM/@@download/ENCFF813BBM.bigWig released s3://encode-public/2016/10/20/ab0fc94c-4507-4504-afd2-b8c08528e1b1/ENCFF813BBM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF994OTP fastq fastq reads ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 170995167 Michael Snyder, Stanford 9707a54c24b08d609dc70ae06eb179bf https://www.encodeproject.org/files/ENCFF994OTP/@@download/ENCFF994OTP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/9b6ad149-3bef-4b3d-9fff-40a997664171/ENCFF994OTP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF392VMR fastq fastq reads ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 134909735 Michael Snyder, Stanford f2701bba3acd72739f5b8e24d1aa4d40 https://www.encodeproject.org/files/ENCFF392VMR/@@download/ENCFF392VMR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/73c4aaef-5e2a-4470-a78d-d481e359fffb/ENCFF392VMR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF871RZV bam bam alignments ce10 ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF994OTP/, /files/ENCFF392VMR/, /files/ENCFF987UMF/ 223281233 Kevin White, UChicago f0d7b0384bf8c11473b19898d227fb5e https://www.encodeproject.org/files/ENCFF871RZV/@@download/ENCFF871RZV.bam released s3://encode-public/2016/10/18/f41970ba-6113-49c4-b92b-d9efec43a466/ENCFF871RZV.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF040LAK bam bam alignments ce11 ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF994OTP/, /files/ENCFF392VMR/, /files/ENCFF586MOL/ 223515654 Kevin White, UChicago 032b734ab4d2af17a80ba556e129a304 https://www.encodeproject.org/files/ENCFF040LAK/@@download/ENCFF040LAK.bam released s3://encode-public/2016/10/19/a46daf71-ee5f-4dd5-873d-31d6867152d6/ENCFF040LAK.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF567QXW bigWig bigWig signal of unique reads ce10 ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF871RZV/ 10016655 Kevin White, UChicago 71dc66d8a5572d048bc008c60163f382 https://www.encodeproject.org/files/ENCFF567QXW/@@download/ENCFF567QXW.bigWig released s3://encode-public/2016/10/20/d0742cc4-21d2-4e98-9f9c-e74024eda4c5/ENCFF567QXW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF903VRA bigWig bigWig read-depth normalized signal ce10 ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF871RZV/ 9985762 Kevin White, UChicago 951d1de225c6d5bdaa932bd428b5efe0 https://www.encodeproject.org/files/ENCFF903VRA/@@download/ENCFF903VRA.bigWig released s3://encode-public/2016/10/20/035f5868-54c2-4741-8630-59cb3048b5fa/ENCFF903VRA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF986IWL bigWig bigWig read-depth normalized signal ce11 ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF040LAK/ 9978566 Kevin White, UChicago 82c1f6a62106fcda6b1fe71c50b889bf https://www.encodeproject.org/files/ENCFF986IWL/@@download/ENCFF986IWL.bigWig released s3://encode-public/2016/10/21/b3a89c2b-4cc8-4032-9679-ebb02350654d/ENCFF986IWL.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF628EQT bigWig bigWig signal of unique reads ce11 ENCSR288FNX Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF040LAK/ 10013212 Kevin White, UChicago d4e6101b588ad9ee1f418db383656ff5 https://www.encodeproject.org/files/ENCFF628EQT/@@download/ENCFF628EQT.bigWig released s3://encode-public/2016/10/21/cf11529b-add7-487e-a6a9-dbb655c4c3f2/ENCFF628EQT.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF485BSV fastq fastq reads ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 151751525 Michael Snyder, Stanford 0883a97d0443ff5e2f46311045d7d517 https://www.encodeproject.org/files/ENCFF485BSV/@@download/ENCFF485BSV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/dd5bbcdc-e48a-46b4-a88d-5b1fd2f498ca/ENCFF485BSV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF498MSP fastq fastq reads ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 157120604 Michael Snyder, Stanford 5db049054b8b0b7b96d2b18281d39b26 https://www.encodeproject.org/files/ENCFF498MSP/@@download/ENCFF498MSP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cca08017-d342-400a-816f-4db25f5822ea/ENCFF498MSP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF517BJF bam bam alignments ce10 ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF498MSP/, /files/ENCFF485BSV/, /files/ENCFF987UMF/ 378416771 Kevin White, UChicago 5b96d144b6467396ab80c28853d0ba0d https://www.encodeproject.org/files/ENCFF517BJF/@@download/ENCFF517BJF.bam released s3://encode-public/2016/10/18/cde4eade-efc7-461e-ac53-28440bf3afd3/ENCFF517BJF.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF995YDJ bam bam alignments ce11 ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF498MSP/, /files/ENCFF485BSV/, /files/ENCFF586MOL/ 378811648 Kevin White, UChicago cf4beb7ff7ec3ac0f6e07eab7f82e888 https://www.encodeproject.org/files/ENCFF995YDJ/@@download/ENCFF995YDJ.bam released s3://encode-public/2016/10/18/417aa1b0-028d-4961-ba4b-e1775a032377/ENCFF995YDJ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF421IBS bigWig bigWig signal of unique reads ce10 ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF517BJF/ 10052572 Kevin White, UChicago 898f02c0515ccfdf3cb6d64f65a2a551 https://www.encodeproject.org/files/ENCFF421IBS/@@download/ENCFF421IBS.bigWig released s3://encode-public/2016/10/20/e595826e-717f-4380-90cd-1ada0b7d2332/ENCFF421IBS.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF613NGI bigWig bigWig read-depth normalized signal ce10 ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF517BJF/ 9996068 Kevin White, UChicago 38a848a0c63237e61b1de103045424b2 https://www.encodeproject.org/files/ENCFF613NGI/@@download/ENCFF613NGI.bigWig released s3://encode-public/2016/10/20/b3a77df4-4f6a-44b0-8249-cdcd62116868/ENCFF613NGI.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF242ABF bigWig bigWig read-depth normalized signal ce11 ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF995YDJ/ 9994289 Kevin White, UChicago fc0cdbcc459db2c6aa134ed4d0a65d73 https://www.encodeproject.org/files/ENCFF242ABF/@@download/ENCFF242ABF.bigWig released s3://encode-public/2016/10/20/9cc5cd28-6ba8-4b42-8344-efbdb3a8976d/ENCFF242ABF.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF316UCR bigWig bigWig signal of unique reads ce11 ENCSR049ZVB Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF995YDJ/ 10047142 Kevin White, UChicago 476d2f62b2ec768fdf48f2c4c4bc6b87 https://www.encodeproject.org/files/ENCFF316UCR/@@download/ENCFF316UCR.bigWig released s3://encode-public/2016/10/20/8eaa048f-00a4-4231-998e-48779ad94b39/ENCFF316UCR.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF001MLP bam bam alignments mm9 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF001MLS/ 712254956 Ross Hardison, PennState e2b2b0486d847d87ec1f21a5df543249 https://www.encodeproject.org/files/ENCFF001MLP/@@download/ENCFF001MLP.bam archived s3://encode-public/2011/11/05/75c43fda-4776-43a6-856a-ab98583704ae/ENCFF001MLP.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MLR bigWig bigWig signal mm9 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 1109820694 Ross Hardison, PennState a02c9860c09456e200ec00fbed66b503 https://www.encodeproject.org/files/ENCFF001MLR/@@download/ENCFF001MLR.bigWig archived s3://encode-public/2011/11/05/999d2c74-aecf-4e96-8d33-18433cc0c1a4/ENCFF001MLR.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MLS fastq fastq reads ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 single-ended 602777567 Ross Hardison, PennState 4b6252f55ac1a7b6bbe2dbc27e087480 https://www.encodeproject.org/files/ENCFF001MLS/@@download/ENCFF001MLS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2011/11/05/1961cd64-7970-470c-b8c6-f4f1bf1c4b87/ENCFF001MLS.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MLT bigWig bigWig signal mm9 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 5777705499 Ross Hardison, PennState f3da921afc1b1c1261153355a9d4fa57 https://www.encodeproject.org/files/ENCFF001MLT/@@download/ENCFF001MLT.bigWig archived s3://encode-public/2011/11/05/6051aa4c-cdc2-49f6-a3d4-7c1f4fc3157d/ENCFF001MLT.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MLU bam bam alignments mm9 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 55 /files/ENCFF001MLY/ 7014680656 Ross Hardison, PennState 66f0fd9f67b84f4e94ce2c550807b796 https://www.encodeproject.org/files/ENCFF001MLU/@@download/ENCFF001MLU.bam archived s3://encode-public/2011/11/05/15eb3edf-c0e6-4794-9ce5-3a8f676a96ab/ENCFF001MLU.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MLV bigWig bigWig signal mm9 ENCSR000DIT Control ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 6126283456 Ross Hardison, PennState fe9c00a1e26cda9b6f62815981c71d52 https://www.encodeproject.org/files/ENCFF001MLV/@@download/ENCFF001MLV.bigWig archived s3://encode-public/2011/11/05/9ae3c878-2754-4d46-b33c-b820695fd335/ENCFF001MLV.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MLY fastq fastq reads ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 55 single-ended 5981948046 Ross Hardison, PennState 1dc3103f90630dfc1403294238976bb7 https://www.encodeproject.org/files/ENCFF001MLY/@@download/ENCFF001MLY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/6915a4a9-2afa-47a0-83c9-0698ff5ca76e/ENCFF001MLY.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF028LFV bam bam unfiltered alignments mm10-minimal ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 55 /files/ENCFF001MLY/, /files/ENCFF516HDY/ 7205003947 J. Michael Cherry, Stanford cafb2948c7b80131d6c20db4a275d065 https://www.encodeproject.org/files/ENCFF028LFV/@@download/ENCFF028LFV.bam archived s3://encode-public/2015/02/10/1b5c6495-0c5e-472b-8d78-6d2e2286ce07/ENCFF028LFV.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF440OBM bam bam unfiltered alignments mm10-minimal ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF001MLS/, /files/ENCFF516HDY/ 749516305 J. Michael Cherry, Stanford 355edc3ad3e16c0fae293800d246152e https://www.encodeproject.org/files/ENCFF440OBM/@@download/ENCFF440OBM.bam archived s3://encode-public/2015/02/10/71a28cd3-a9be-4229-b50d-f9925d203ac3/ENCFF440OBM.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF080XIS bam bam unfiltered alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MLS/ 750859178 ENCODE Processing Pipeline c4a78a6377e732e347804b591fb01c30 https://www.encodeproject.org/files/ENCFF080XIS/@@download/ENCFF080XIS.bam released s3://encode-public/2016/10/26/136e0366-72c9-4ce3-8a6a-9c3844cfe55e/ENCFF080XIS.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF867VYO bam bam alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MLS/ 557658280 ENCODE Processing Pipeline 3c8a5d4c6d5fee1154ac6cd840ee8f0c https://www.encodeproject.org/files/ENCFF867VYO/@@download/ENCFF867VYO.bam released s3://encode-public/2016/10/26/74f5075e-417a-48dc-a11b-8bf54b17d69c/ENCFF867VYO.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF318FKF bam bam alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MLY/ 4081901005 ENCODE Processing Pipeline bf2c8f819d7b3de25f4ec0dca5c8a5df https://www.encodeproject.org/files/ENCFF318FKF/@@download/ENCFF318FKF.bam released s3://encode-public/2016/11/28/9191504c-02f7-47ff-8958-7bc223cbf720/ENCFF318FKF.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF034BAJ bam bam unfiltered alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MLY/ 5743718241 ENCODE Processing Pipeline 10ad5270433d733a6c22597395725e1f https://www.encodeproject.org/files/ENCFF034BAJ/@@download/ENCFF034BAJ.bam released s3://encode-public/2016/11/28/2cedfaf0-5c4a-4bbd-a47b-4ec8f6b9aa18/ENCFF034BAJ.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF670WNW bam bam unfiltered alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF001MLS/, /files/ENCFF309GLL/ 732868641 ENCODE Processing Pipeline fe4cbf3d695626611b8dac275ea001f5 https://www.encodeproject.org/files/ENCFF670WNW/@@download/ENCFF670WNW.bam released s3://encode-public/2020/10/12/c707d6f6-de32-4c4e-8111-51e652bef739/ENCFF670WNW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF328BJS bam bam unfiltered alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF001MLY/, /files/ENCFF309GLL/ 5659118723 ENCODE Processing Pipeline aaaec9ca4240d9f0cb67c0c5fb8234c7 https://www.encodeproject.org/files/ENCFF328BJS/@@download/ENCFF328BJS.bam released s3://encode-public/2020/10/12/d5b34d7b-4353-41ff-bd15-23d36ad9a422/ENCFF328BJS.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF539HQV bam bam alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF001MLS/, /files/ENCFF309GLL/ 589606754 ENCODE Processing Pipeline 72d5d1fbb588da5ab75cb27b9e135503 https://www.encodeproject.org/files/ENCFF539HQV/@@download/ENCFF539HQV.bam released s3://encode-public/2020/10/12/58acde94-1c08-475e-8b46-ccff6d01d2cc/ENCFF539HQV.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF405NYO bam bam alignments mm10 ENCSR000DIT Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF001MLY/, /files/ENCFF309GLL/ 4375082106 ENCODE Processing Pipeline faa92dd1d30ad4dc48472100c42acb29 https://www.encodeproject.org/files/ENCFF405NYO/@@download/ENCFF405NYO.bam released s3://encode-public/2020/10/12/e9a95c48-1bb1-4448-8460-665cc1237e62/ENCFF405NYO.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000VKL bam bam alignments hg19 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 /files/ENCFF000VKM/, /files/ENCFF000VKN/ 757463069 Peggy Farnham, USC ea230cd60c5e1329a6219a3501fd0bc2 https://www.encodeproject.org/files/ENCFF000VKL/@@download/ENCFF000VKL.bam archived s3://encode-public/2011/03/22/c1e290d5-e918-4a99-b8b7-513125f8a715/ENCFF000VKL.bam Lab custom hg19 archived low read length ENCFF000VKM fastq fastq reads ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 single-ended 1666162040 Peggy Farnham, USC ee2f2a766989d6d814ffdbcae78fc2f3 https://www.encodeproject.org/files/ENCFF000VKM/@@download/ENCFF000VKM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/33dd8cbe-a11e-49d9-9333-b059d356dcdc/ENCFF000VKM.fastq.gz low read length ENCFF000VKO bigWig bigWig signal hg19 ENCSR000EXS Control ChIP-seq CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 291649203 Peggy Farnham, USC cdcf19f508b7ca9444ff9444c32c0182 https://www.encodeproject.org/files/ENCFF000VKO/@@download/ENCFF000VKO.bigWig archived s3://encode-public/2011/03/22/b6475e5f-d066-4a78-9d4d-5df1f01da867/ENCFF000VKO.bigWig Lab custom hg19 archived low read length ENCFF000VKN fastq fastq reads ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 single-ended 1285315643 Peggy Farnham, USC f088f4faccc4e2ecfe8a0ad640245524 https://www.encodeproject.org/files/ENCFF000VKN/@@download/ENCFF000VKN.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/50fc3077-36c4-43c2-b3cd-ab1ffcfe142e/ENCFF000VKN.fastq.gz low read length ENCFF676VDZ bam bam unfiltered alignments GRCh38 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF643CGH/ 3372735765 ENCODE Processing Pipeline 66ff5359ce16ccc3cb7f6e1b31c90e09 https://www.encodeproject.org/files/ENCFF676VDZ/@@download/ENCFF676VDZ.bam released s3://encode-public/2016/08/09/0654cc08-f356-422b-83b1-6650aa5c8b81/ENCFF676VDZ.bam ENCODE3 GRCh38 archived low read length ENCFF738UVB bam bam alignments GRCh38 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF643CGH/ 1920688740 ENCODE Processing Pipeline 217aeb7f02dce5a816eae47fdfbcddf2 https://www.encodeproject.org/files/ENCFF738UVB/@@download/ENCFF738UVB.bam released s3://encode-public/2016/08/09/ee9d9b7e-e8fa-4890-8aa5-398af9f24ae4/ENCFF738UVB.bam ENCODE3 GRCh38 archived low read length ENCFF519MQF bam bam unfiltered alignments hg19 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 38 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF807MUK/ 3279913405 ENCODE Processing Pipeline 4a589b46ed20b2af7fdb97501feaa0e1 https://www.encodeproject.org/files/ENCFF519MQF/@@download/ENCFF519MQF.bam released s3://encode-public/2016/11/19/ec307ef1-663d-4b17-9006-5e819a608ca1/ENCFF519MQF.bam ENCODE3 hg19 archived low read length ENCFF908XUV bam bam unfiltered alignments hg19 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF807MUK/ 3360332269 ENCODE Processing Pipeline fa9720b3f64834d5d68d3697ce08e6f3 https://www.encodeproject.org/files/ENCFF908XUV/@@download/ENCFF908XUV.bam released s3://encode-public/2016/11/19/df9b7beb-15b0-41fa-bf9f-2d6aa70ff3c9/ENCFF908XUV.bam ENCODE3 hg19 archived low read length ENCFF814VRG bam bam alignments hg19 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 38 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF807MUK/ 1870060040 ENCODE Processing Pipeline 2f909cb5025440ed4218b6520930b3b4 https://www.encodeproject.org/files/ENCFF814VRG/@@download/ENCFF814VRG.bam released s3://encode-public/2016/11/19/fd89dbaa-e35b-4335-8cf3-268290dc637d/ENCFF814VRG.bam ENCODE3 hg19 archived low read length ENCFF918JVX bam bam alignments hg19 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF807MUK/ 1921554403 ENCODE Processing Pipeline a9574d21d55359d8fc734cb44c6144f7 https://www.encodeproject.org/files/ENCFF918JVX/@@download/ENCFF918JVX.bam released s3://encode-public/2016/11/19/0c6584d2-c989-4ead-a631-bafaafa9762e/ENCFF918JVX.bam ENCODE3 hg19 archived low read length ENCFF176MNQ bam bam unfiltered alignments GRCh38 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 38 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF643CGH/ 3292323903 ENCODE Processing Pipeline 20d26093e40a144958dbec615d6b3014 https://www.encodeproject.org/files/ENCFF176MNQ/@@download/ENCFF176MNQ.bam released s3://encode-public/2016/11/19/235aba97-eb08-480f-bdf8-5e9e090cc0df/ENCFF176MNQ.bam ENCODE3 GRCh38 archived low read length ENCFF522CTK bam bam alignments GRCh38 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 38 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF643CGH/ 1868950506 ENCODE Processing Pipeline b8d1e159a81587336746af9dd4706d59 https://www.encodeproject.org/files/ENCFF522CTK/@@download/ENCFF522CTK.bam released s3://encode-public/2016/11/19/9265e367-0a15-48aa-88cb-70009e713fdf/ENCFF522CTK.bam ENCODE3 GRCh38 archived low read length ENCFF595ATX bam bam unfiltered alignments GRCh38 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF110MCL/ 3336195830 ENCODE Processing Pipeline 726c812db8cc225db694a104bbcf96e0 https://www.encodeproject.org/files/ENCFF595ATX/@@download/ENCFF595ATX.bam released s3://encode-public/2020/09/03/b5f356b1-e484-4c87-88f5-4fda49ff2965/ENCFF595ATX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF311PTP bam bam alignments GRCh38 ENCSR000EXS Control ChIP-seq /human-donors/ENCDO274AAA/ CL:0000842 mononuclear cell primary cell Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 40 /files/ENCFF000VKM/, /files/ENCFF000VKN/, /files/ENCFF110MCL/ 1862030712 ENCODE Processing Pipeline 2a05f00f03408f197e01234d019939b7 https://www.encodeproject.org/files/ENCFF311PTP/@@download/ENCFF311PTP.bam released s3://encode-public/2020/09/03/a451e499-fa86-4db3-82de-a511d6713e76/ENCFF311PTP.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000ODC bam bam alignments hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000ODG/ 210772512 Richard Myers, HAIB 0939616c629064efacfeb87ca8248e8c https://www.encodeproject.org/files/ENCFF000ODC/@@download/ENCFF000ODC.bam archived s3://encode-public/2012/01/23/0b70468c-a61d-427b-9bc7-629a766e4624/ENCFF000ODC.bam Lab custom hg19 archived low read depth extremely low read length ENCFF000ODD bam bam alignments hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000ODJ/ 166411227 Richard Myers, HAIB c13dec074bc3724162c9406a991922ba https://www.encodeproject.org/files/ENCFF000ODD/@@download/ENCFF000ODD.bam archived s3://encode-public/2012/01/23/37dcc48a-7581-435a-9eea-d85bda7c1435/ENCFF000ODD.bam Lab custom hg19 archived low read depth extremely low read length ENCFF000ODE bigWig bigWig raw signal hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 3119498 Richard Myers, HAIB 7f4578111d7bf0342afa923aca140631 https://www.encodeproject.org/files/ENCFF000ODE/@@download/ENCFF000ODE.bigWig archived s3://encode-public/2012/01/23/b9dbf966-32f2-4665-93e2-0ea536c3e0a9/ENCFF000ODE.bigWig Lab custom hg19 archived low read depth extremely low read length ENCFF000ODF bigWig bigWig raw signal hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 2228030 Richard Myers, HAIB 3d69ecd4fcbe5a4bad00bddf904d1a20 https://www.encodeproject.org/files/ENCFF000ODF/@@download/ENCFF000ODF.bigWig archived s3://encode-public/2012/01/23/585ce161-5980-471f-ba74-cead64116d59/ENCFF000ODF.bigWig Lab custom hg19 archived low read depth extremely low read length ENCFF000ODG fastq fastq reads ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 single-ended 556803234 Richard Myers, HAIB 95b2f81ce3670cede02b78eba5ba7b5c https://www.encodeproject.org/files/ENCFF000ODG/@@download/ENCFF000ODG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/33d996a2-3b83-4be9-aa48-93cfe5bd880d/ENCFF000ODG.fastq.gz low read depth extremely low read length ENCFF000ODJ fastq fastq reads ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 single-ended 920696125 Richard Myers, HAIB 7ac7a6b31fb9620d8695d80f7eb55ac9 https://www.encodeproject.org/files/ENCFF000ODJ/@@download/ENCFF000ODJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/752cc8a2-51f2-46b9-8864-84b25f9ecca6/ENCFF000ODJ.fastq.gz low read depth extremely low read length ENCFF894ZKV bam bam unfiltered alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 /files/ENCFF643CGH/, /files/ENCFF000ODJ/ 1504128683 ENCODE Processing Pipeline 2b52eb10345bd29316e2bcc1372adec2 https://www.encodeproject.org/files/ENCFF894ZKV/@@download/ENCFF894ZKV.bam released s3://encode-public/2016/10/26/8feefd34-2ae1-424a-abff-d0130d8d0f58/ENCFF894ZKV.bam ENCODE3 GRCh38 archived low read depth extremely low read length ENCFF629YWV bam bam unfiltered alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF643CGH/, /files/ENCFF000ODG/ 911153402 ENCODE Processing Pipeline e22e76821885b211c9f50a6eece525c7 https://www.encodeproject.org/files/ENCFF629YWV/@@download/ENCFF629YWV.bam released s3://encode-public/2016/10/26/96d13838-bb60-49ce-95f3-d002f80d6d8d/ENCFF629YWV.bam ENCODE3 GRCh38 archived low read depth extremely low read length ENCFF862QZT bam bam alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF643CGH/, /files/ENCFF000ODG/ 493460389 ENCODE Processing Pipeline 000baa5b5f699cad3d4893cf99f1c7ba https://www.encodeproject.org/files/ENCFF862QZT/@@download/ENCFF862QZT.bam released s3://encode-public/2016/10/26/489ac17a-00fb-44f4-a6e1-d4b277b4ea17/ENCFF862QZT.bam ENCODE3 GRCh38 archived low read depth extremely low read length ENCFF289ONG bam bam alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 /files/ENCFF643CGH/, /files/ENCFF000ODJ/ 820851713 ENCODE Processing Pipeline 6483893d26d1e86d81a8ba7b9704278b https://www.encodeproject.org/files/ENCFF289ONG/@@download/ENCFF289ONG.bam released s3://encode-public/2016/10/26/154a7725-a07c-4507-86fc-0e4c05a75a82/ENCFF289ONG.bam ENCODE3 GRCh38 archived low read depth extremely low read length ENCFF550TQQ bam bam unfiltered alignments hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 /files/ENCFF807MUK/, /files/ENCFF000ODJ/ 1498558588 ENCODE Processing Pipeline 6fc00cc83c97eaa8b34c9bf0218b8c67 https://www.encodeproject.org/files/ENCFF550TQQ/@@download/ENCFF550TQQ.bam released s3://encode-public/2016/11/13/154e39ec-c555-401d-9447-63718939cb6b/ENCFF550TQQ.bam ENCODE3 hg19 archived low read depth extremely low read length ENCFF713QOC bam bam unfiltered alignments hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF807MUK/, /files/ENCFF000ODG/ 908454912 ENCODE Processing Pipeline e739fc1d42d3501e935b69db2471d6cf https://www.encodeproject.org/files/ENCFF713QOC/@@download/ENCFF713QOC.bam released s3://encode-public/2016/11/13/252563a5-9f2b-4efb-a377-96260de23bb6/ENCFF713QOC.bam ENCODE3 hg19 archived low read depth extremely low read length ENCFF416BIN bam bam alignments hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 /files/ENCFF807MUK/, /files/ENCFF000ODJ/ 816748059 ENCODE Processing Pipeline c090ff403cce724b9417c2560d1920c4 https://www.encodeproject.org/files/ENCFF416BIN/@@download/ENCFF416BIN.bam released s3://encode-public/2016/11/13/a88a6a7d-6264-4cf1-963a-7136b3ca7f77/ENCFF416BIN.bam ENCODE3 hg19 archived low read depth extremely low read length ENCFF818ZLY bam bam alignments hg19 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF807MUK/, /files/ENCFF000ODG/ 489527711 ENCODE Processing Pipeline 94729a58a8a9e2150bd25f7bee8929d4 https://www.encodeproject.org/files/ENCFF818ZLY/@@download/ENCFF818ZLY.bam released s3://encode-public/2016/11/13/05df5ff9-4d71-45cf-91f4-21c786a5238d/ENCFF818ZLY.bam ENCODE3 hg19 archived low read depth extremely low read length ENCFF489VRG bam bam unfiltered alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF110MCL/, /files/ENCFF000ODG/ 842465088 ENCODE Processing Pipeline 21d360e13ccaa33d45ce5ee0f23aef15 https://www.encodeproject.org/files/ENCFF489VRG/@@download/ENCFF489VRG.bam released s3://encode-public/2020/10/28/87d53d66-acd6-429b-b11f-104f0a86ee7a/ENCFF489VRG.bam ENCODE4 v1.5.1 GRCh38 released low read depth extremely low read length ENCFF811TNR bam bam unfiltered alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 /files/ENCFF110MCL/, /files/ENCFF000ODJ/ 1391345024 ENCODE Processing Pipeline 9ed2a0c765ac1a212898efdad400cf49 https://www.encodeproject.org/files/ENCFF811TNR/@@download/ENCFF811TNR.bam released s3://encode-public/2020/10/28/4f4f4f0c-e432-4901-8ba7-c91e13a5f446/ENCFF811TNR.bam ENCODE4 v1.5.1 GRCh38 released low read depth extremely low read length ENCFF002PKP bam bam alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF110MCL/, /files/ENCFF000ODG/ 569705944 ENCODE Processing Pipeline 93fafbdc8d01bd1d85fecb9cfe935d4e https://www.encodeproject.org/files/ENCFF002PKP/@@download/ENCFF002PKP.bam released s3://encode-public/2020/10/28/515e3010-c57d-4828-a7ee-27cf1666c347/ENCFF002PKP.bam ENCODE4 v1.5.1 GRCh38 released low read depth extremely low read length ENCFF768KPY bam bam alignments GRCh38 ENCSR000BGJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 /files/ENCFF110MCL/, /files/ENCFF000ODJ/ 944399309 ENCODE Processing Pipeline 36fca7cc202bfa0c85a82c244bcbb66b https://www.encodeproject.org/files/ENCFF768KPY/@@download/ENCFF768KPY.bam released s3://encode-public/2020/10/28/7020a808-55ca-453b-801e-d24386dada32/ENCFF768KPY.bam ENCODE4 v1.5.1 GRCh38 released low read depth extremely low read length ENCFF987SEN fastq fastq reads ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 81392104 Michael Snyder, Stanford 01b6c23292ca8199bfabc1656126d069 https://www.encodeproject.org/files/ENCFF987SEN/@@download/ENCFF987SEN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2f40be3d-3d14-45d6-87aa-8b586946a4a1/ENCFF987SEN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF221OJT fastq fastq reads ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 118162508 Michael Snyder, Stanford 838fbc61371b093829b79fa75652e5d9 https://www.encodeproject.org/files/ENCFF221OJT/@@download/ENCFF221OJT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/75aea27a-7da4-412f-aec1-8f7d70633dac/ENCFF221OJT.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF736QGX bam bam alignments ce10 ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF987SEN/, /files/ENCFF221OJT/, /files/ENCFF987UMF/ 262700444 Kevin White, UChicago 3df81e92c9e82fea47398f475f29b5c1 https://www.encodeproject.org/files/ENCFF736QGX/@@download/ENCFF736QGX.bam released s3://encode-public/2016/10/18/5cc886fd-bce6-4763-8dc4-8069e6d4c335/ENCFF736QGX.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF767GRN bam bam alignments ce11 ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF987SEN/, /files/ENCFF221OJT/, /files/ENCFF586MOL/ 262975379 Kevin White, UChicago 50b0253645642e985579f51a4075b315 https://www.encodeproject.org/files/ENCFF767GRN/@@download/ENCFF767GRN.bam released s3://encode-public/2016/10/19/3ba0bf29-8471-4fb8-8d0d-a05a643be1db/ENCFF767GRN.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF755IIY bigWig bigWig read-depth normalized signal ce10 ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF736QGX/ 10043325 Kevin White, UChicago bd28f5d896daa79671ee0b1843a46162 https://www.encodeproject.org/files/ENCFF755IIY/@@download/ENCFF755IIY.bigWig released s3://encode-public/2016/10/20/59339fe1-4927-4663-bb5b-e8bf1104db1e/ENCFF755IIY.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF476SBI bigWig bigWig signal of unique reads ce10 ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF736QGX/ 10049630 Kevin White, UChicago 4d713337d78e8dbf005e0f28fe11f413 https://www.encodeproject.org/files/ENCFF476SBI/@@download/ENCFF476SBI.bigWig released s3://encode-public/2016/10/20/28a7a9ab-7ced-429e-aaa4-789baed87170/ENCFF476SBI.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF897YEW bigWig bigWig read-depth normalized signal ce11 ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF767GRN/ 10042862 Kevin White, UChicago 96bce6548cc2f296feb952d19adeba53 https://www.encodeproject.org/files/ENCFF897YEW/@@download/ENCFF897YEW.bigWig released s3://encode-public/2016/10/21/60ae8fbc-1f22-4e71-bad1-c75f1124437c/ENCFF897YEW.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF215QVQ bigWig bigWig signal of unique reads ce11 ENCSR809ILU Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF767GRN/ 10048235 Kevin White, UChicago 988f8aff0b386c1f4aaa75402bf34abb https://www.encodeproject.org/files/ENCFF215QVQ/@@download/ENCFF215QVQ.bigWig released s3://encode-public/2016/10/21/d0783e2a-a516-4dbb-afbc-8e2da772cea2/ENCFF215QVQ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF889RBK fastq fastq reads ENCSR332LQE Control ChIP-seq /worm-donors/ENCDO583CKU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 476398606 Kevin White, UChicago acded8e4917b009547e3c550aa470ed7 https://www.encodeproject.org/files/ENCFF889RBK/@@download/ENCFF889RBK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/0739b3f7-41b0-48af-b885-f74dc54eaa2e/ENCFF889RBK.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF173DQN bam bam alignments ce10 ENCSR332LQE Control ChIP-seq /worm-donors/ENCDO583CKU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF889RBK/ 691752493 Kevin White, UChicago 8ab284c3081e9ccadc07260f70490ca1 https://www.encodeproject.org/files/ENCFF173DQN/@@download/ENCFF173DQN.bam released s3://encode-public/2015/08/19/f6a46050-fa24-4948-b67f-211ff3b27e8f/ENCFF173DQN.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF306QOV bigWig bigWig read-depth normalized signal ce10 ENCSR332LQE Control ChIP-seq /worm-donors/ENCDO583CKU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF173DQN/ 9967259 Kevin White, UChicago 5a8c2807c34f6f29f497f766be9c0cb1 https://www.encodeproject.org/files/ENCFF306QOV/@@download/ENCFF306QOV.bigWig released s3://encode-public/2015/10/02/eb346764-2ac6-41f3-a2d8-a032bcec63c2/ENCFF306QOV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF260KTB bigWig bigWig signal of unique reads ce10 ENCSR332LQE Control ChIP-seq /worm-donors/ENCDO583CKU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF173DQN/ 9956662 Kevin White, UChicago 075b296d5f42e32bea2f9b8826725793 https://www.encodeproject.org/files/ENCFF260KTB/@@download/ENCFF260KTB.bigWig released s3://encode-public/2015/10/02/fa61eb5d-0d09-4eb4-b659-450264546989/ENCFF260KTB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF155BRD bam bam alignments ce11 ENCSR332LQE Control ChIP-seq /worm-donors/ENCDO583CKU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF889RBK/ 692339143 Kevin White, UChicago e7209d0918152d5edb7225ddfe6cbdff https://www.encodeproject.org/files/ENCFF155BRD/@@download/ENCFF155BRD.bam released s3://encode-public/2016/01/16/f2b45b18-d3a2-4833-bd66-a0b29a69507b/ENCFF155BRD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF728XQE bigWig bigWig signal of unique reads ce11 ENCSR332LQE Control ChIP-seq /worm-donors/ENCDO583CKU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF155BRD/ 9952529 Kevin White, UChicago b801aa604836af7db0ac463f0054cbdc https://www.encodeproject.org/files/ENCFF728XQE/@@download/ENCFF728XQE.bigWig released s3://encode-public/2016/02/03/053b3c50-6d98-42f6-a228-61b45713974c/ENCFF728XQE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF132JHW bigWig bigWig read-depth normalized signal ce11 ENCSR332LQE Control ChIP-seq /worm-donors/ENCDO583CKU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF155BRD/ 9964681 Kevin White, UChicago fd646c1555bac05646e047110ab534a6 https://www.encodeproject.org/files/ENCFF132JHW/@@download/ENCFF132JHW.bigWig released s3://encode-public/2016/02/03/f9d92dc5-5710-459e-ab62-f0f985607891/ENCFF132JHW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing external identifiers, missing genetic modification characterization ENCFF002BXP fastq fastq reads ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 885978621 Bing Ren, UCSD 7c092de44b32a999cdc81f6284dd77ff SRA:SRR3652780 https://www.encodeproject.org/files/ENCFF002BXP/@@download/ENCFF002BXP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/62babe60-c6d8-4f55-a06c-0f5fc72fbac9/ENCFF002BXP.fastq.gz low read depth, low read length ENCFF002BXQ fastq fastq reads ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 755934402 Bing Ren, UCSD aaa8d71f6a1be52ef2983e1c13d9d27e SRA:SRR3652779 https://www.encodeproject.org/files/ENCFF002BXQ/@@download/ENCFF002BXQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/51e86e6a-41e1-406d-bb0e-d4f8aca387ab/ENCFF002BXQ.fastq.gz low read depth, low read length ENCFF639PPY bam bam unfiltered alignments mm10-minimal ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXP/ 1133395985 ENCODE Processing Pipeline fd7944db4ecbccf997818658c999d5c9 https://www.encodeproject.org/files/ENCFF639PPY/@@download/ENCFF639PPY.bam archived s3://encode-public/2015/02/09/4a380b5c-de7a-4c44-94a1-b71a6619917b/ENCFF639PPY.bam low read depth, low read length ENCFF924JSD bam bam unfiltered alignments mm10-minimal ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXQ/ 969665311 ENCODE Processing Pipeline 9cb0f92bee5ac5bd71c8d61faadeb79c https://www.encodeproject.org/files/ENCFF924JSD/@@download/ENCFF924JSD.bam archived s3://encode-public/2015/02/09/c24e6e23-08e9-499e-a302-73b6e2d0c2a3/ENCFF924JSD.bam low read depth, low read length ENCFF126TZS bam bam alignments mm10-minimal ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXQ/ 576325756 ENCODE Processing Pipeline a55e8a4a93a3a38d1c8f0e4d79468ad9 https://www.encodeproject.org/files/ENCFF126TZS/@@download/ENCFF126TZS.bam archived s3://encode-public/2015/03/20/61076560-8c91-4a64-928f-29911ecea16e/ENCFF126TZS.bam low read depth, low read length ENCFF731DCA bam bam alignments mm10-minimal ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXP/ 668417351 ENCODE Processing Pipeline f21d72f9189f99e83bfa7dee62d8f26b https://www.encodeproject.org/files/ENCFF731DCA/@@download/ENCFF731DCA.bam archived s3://encode-public/2015/03/20/2d66a79d-bf7b-4bed-b0aa-ad76dc7ef9ff/ENCFF731DCA.bam low read depth, low read length ENCFF898WUB bam bam unfiltered alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXP/ 1135082853 ENCODE Processing Pipeline dca92f98b4928d38733d23fc17004a76 https://www.encodeproject.org/files/ENCFF898WUB/@@download/ENCFF898WUB.bam released s3://encode-public/2016/05/20/216bc46c-b41e-4887-ab05-7928132c7227/ENCFF898WUB.bam ENCODE3 mm10 archived low read depth, low read length ENCFF126KIU bam bam unfiltered alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXQ/ 971225836 ENCODE Processing Pipeline 8790e340eb5c26f09466ede73c245b17 https://www.encodeproject.org/files/ENCFF126KIU/@@download/ENCFF126KIU.bam released s3://encode-public/2016/05/20/52c278b5-3534-498c-a4c7-400a39695353/ENCFF126KIU.bam ENCODE3 mm10 archived low read depth, low read length ENCFF461JUO bam bam alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXP/ 668155923 ENCODE Processing Pipeline 2023b38ac3f7d116beab9b557ab072a2 https://www.encodeproject.org/files/ENCFF461JUO/@@download/ENCFF461JUO.bam released s3://encode-public/2016/05/20/674b263a-b24c-4750-81f0-fd6e20eb466b/ENCFF461JUO.bam ENCODE3 mm10 archived low read depth, low read length ENCFF276TCT bam bam alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXQ/ 576099097 ENCODE Processing Pipeline 3598924a9611d873f04b5aee3925aa00 https://www.encodeproject.org/files/ENCFF276TCT/@@download/ENCFF276TCT.bam released s3://encode-public/2016/05/20/e8f66432-12d1-41bf-ae8d-fbd4bc54550a/ENCFF276TCT.bam ENCODE3 mm10 archived low read depth, low read length ENCFF704YYM bam bam unfiltered alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXP/ 1103845626 ENCODE Processing Pipeline 8b39da384321e8c59c321d5eb22d06df https://www.encodeproject.org/files/ENCFF704YYM/@@download/ENCFF704YYM.bam released s3://encode-public/2020/10/08/0df52845-b113-48e5-beb0-918a6004349a/ENCFF704YYM.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF061NPF bam bam alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXQ/ 619407820 ENCODE Processing Pipeline 91748555105d096e5a1396cfc98be64d https://www.encodeproject.org/files/ENCFF061NPF/@@download/ENCFF061NPF.bam released s3://encode-public/2020/10/08/0b052b83-1606-4ed0-b1a7-f65da73c0f31/ENCFF061NPF.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF511JQE bam bam unfiltered alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXQ/ 944264640 ENCODE Processing Pipeline caa4c6b4b5f964ce3fce0347d37bdf85 https://www.encodeproject.org/files/ENCFF511JQE/@@download/ENCFF511JQE.bam released s3://encode-public/2020/10/08/5f97f5a4-037a-43ca-bb13-76d8eb69e325/ENCFF511JQE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF815YVI bam bam alignments mm10 ENCSR685AMF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXP/ 718333860 ENCODE Processing Pipeline 5fddb665b5fb37cc354297e07fb1cbb8 https://www.encodeproject.org/files/ENCFF815YVI/@@download/ENCFF815YVI.bam released s3://encode-public/2020/10/08/a2271fe4-7e25-403d-ba2d-44bf575de622/ENCFF815YVI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF000ZQO fastq fastq reads ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 single-ended 844293100 Michael Snyder, Stanford 7f96ed23e4bfd1e7b6b524de6b68310c https://www.encodeproject.org/files/ENCFF000ZQO/@@download/ENCFF000ZQO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/590b9bd7-4a39-42ae-b4f2-b4dde76d1a2e/ENCFF000ZQO.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF000ZQS bigWig bigWig signal hg19 ENCSR000EHU Control ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 318090835 Michael Snyder, Stanford 2ed60f741c65f4dd51d3cf83d16fcfdb https://www.encodeproject.org/files/ENCFF000ZQS/@@download/ENCFF000ZQS.bigWig archived s3://encode-public/2012/07/01/e7715adf-4c60-4adb-bf01-84a2f3a1443a/ENCFF000ZQS.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF000ZQT bam bam alignments hg19 ENCSR000EHU Control ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 32 802548518 Michael Snyder, Stanford 7c6d409569dde59f1257442203dd0851 https://www.encodeproject.org/files/ENCFF000ZQT/@@download/ENCFF000ZQT.bam archived s3://encode-public/2012/07/01/736873ef-c77b-449e-896d-f825f5a83b6a/ENCFF000ZQT.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF000ZQQ fastq fastq reads ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 single-ended 719499346 Michael Snyder, Stanford 37643660787ca54a09e51f462c08ebea https://www.encodeproject.org/files/ENCFF000ZQQ/@@download/ENCFF000ZQQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/e8ddacae-f9b0-425c-8ea1-03dfa24498e8/ENCFF000ZQQ.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF888KAT bam bam unfiltered alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZQQ/ 805311983 ENCODE Processing Pipeline 76d058999f197511fdef5e6c1e59d3c4 https://www.encodeproject.org/files/ENCFF888KAT/@@download/ENCFF888KAT.bam released s3://encode-public/2016/10/26/c8454352-fa77-4bf7-bf73-d3304ab855c5/ENCFF888KAT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF740DXN bam bam unfiltered alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZQO/ 942448591 ENCODE Processing Pipeline c99ecc065ca553633bb02501dbcabc41 https://www.encodeproject.org/files/ENCFF740DXN/@@download/ENCFF740DXN.bam released s3://encode-public/2016/10/26/9c9beaca-f997-459e-9b93-40206af91223/ENCFF740DXN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF144BVJ bam bam alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZQQ/ 487581644 ENCODE Processing Pipeline 840448ca4783acaee352a1279f364e63 https://www.encodeproject.org/files/ENCFF144BVJ/@@download/ENCFF144BVJ.bam released s3://encode-public/2016/10/26/fe88bfd3-d5d0-4b57-92e6-d555cfb1eec4/ENCFF144BVJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF282PXC bam bam alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZQO/ 593776135 ENCODE Processing Pipeline 50d432baba4f5be03e3b3a11983a0ba8 https://www.encodeproject.org/files/ENCFF282PXC/@@download/ENCFF282PXC.bam released s3://encode-public/2016/10/26/5a2a132d-2d6c-4e35-bc97-3955f2d7f6f1/ENCFF282PXC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF128FIL bam bam unfiltered alignments hg19 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZQQ/ 800928022 ENCODE Processing Pipeline c374270763e005d4267dc2eef3c8318f https://www.encodeproject.org/files/ENCFF128FIL/@@download/ENCFF128FIL.bam released s3://encode-public/2016/11/30/69f7e48a-8869-424a-85de-a518743e0ec3/ENCFF128FIL.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF971BQF bam bam unfiltered alignments hg19 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZQO/ 938637452 ENCODE Processing Pipeline b6320588dfc6cfd27eca4754542a42ff https://www.encodeproject.org/files/ENCFF971BQF/@@download/ENCFF971BQF.bam released s3://encode-public/2016/11/30/63836569-abe4-42e6-aa0a-be09563d950d/ENCFF971BQF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF089TJI bam bam alignments hg19 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZQQ/ 487821787 ENCODE Processing Pipeline 05706e4f4b7f5d1cc52e5276633d435c https://www.encodeproject.org/files/ENCFF089TJI/@@download/ENCFF089TJI.bam released s3://encode-public/2016/11/30/d7745072-1853-46cf-87c8-382e2af41b4b/ENCFF089TJI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF666ZPP bam bam alignments hg19 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZQO/ 594019880 ENCODE Processing Pipeline 8461f90033175b6cdee25a7840981af5 https://www.encodeproject.org/files/ENCFF666ZPP/@@download/ENCFF666ZPP.bam released s3://encode-public/2016/11/30/2b05b1d8-aa69-4fbc-a0ad-3664d61f6b28/ENCFF666ZPP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF324UND bam bam unfiltered alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZQO/ 921537212 ENCODE Processing Pipeline e8c359adad13bb765a00fb0168a76bfb https://www.encodeproject.org/files/ENCFF324UND/@@download/ENCFF324UND.bam released s3://encode-public/2020/09/03/460a96b0-2008-4b39-a85a-33584cec7aa5/ENCFF324UND.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF495DZQ bam bam alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZQQ/ 535801823 ENCODE Processing Pipeline 04819d9a1552ad73481f21b0c406b193 https://www.encodeproject.org/files/ENCFF495DZQ/@@download/ENCFF495DZQ.bam released s3://encode-public/2020/09/03/4f0036d4-0fdc-42da-a1cb-b546886e7821/ENCFF495DZQ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF274HHU bam bam unfiltered alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZQQ/ 786762003 ENCODE Processing Pipeline 7c1a44bebda7de9c33e78139b46bb4b8 https://www.encodeproject.org/files/ENCFF274HHU/@@download/ENCFF274HHU.bam released s3://encode-public/2020/09/03/790daec2-3861-4187-a941-cf73bcca4e5c/ENCFF274HHU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF608OMK bam bam alignments GRCh38 ENCSR000EHU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZQO/ 649920229 ENCODE Processing Pipeline 3a0ce337f36cabf18e9284f14d61da16 https://www.encodeproject.org/files/ENCFF608OMK/@@download/ENCFF608OMK.bam released s3://encode-public/2020/09/03/a931333a-2a6d-4a86-be1a-843175dcdb5e/ENCFF608OMK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF001HAK bigWig bigWig raw signal hg19 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HAL/ 191792086 John Stamatoyannopoulos, UW 27f7d35df75cab7ae6a7b0af362b05ef https://www.encodeproject.org/files/ENCFF001HAK/@@download/ENCFF001HAK.bigWig archived s3://encode-public/2011/06/25/8217ba52-2beb-4964-82a1-14304f91f0be/ENCFF001HAK.bigWig Lab custom hg19 archived low read length ENCFF001HAL bam bam alignments hg19 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAV/ 927123079 John Stamatoyannopoulos, UW a998c692fd0af13254f1b919c94b8602 https://www.encodeproject.org/files/ENCFF001HAL/@@download/ENCFF001HAL.bam archived s3://encode-public/2011/06/25/ac43534f-10bc-4ffb-8163-99a880d2b160/ENCFF001HAL.bam Lab custom hg19 archived low read length ENCFF001HAV fastq fastq reads ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 978787671 John Stamatoyannopoulos, UW 446280508b26672b70dbc041a4847dc4 https://www.encodeproject.org/files/ENCFF001HAV/@@download/ENCFF001HAV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/6c8c3acc-c059-44a9-8a35-7028254a6e17/ENCFF001HAV.fastq.gz low read length ENCFF443JRW bam bam unfiltered alignments GRCh38 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAV/, /files/ENCFF643CGH/ 1184067957 ENCODE Processing Pipeline 724b6275d630452bdfaf6739b1df815c https://www.encodeproject.org/files/ENCFF443JRW/@@download/ENCFF443JRW.bam released s3://encode-public/2016/08/09/4c7836f8-02d9-4f3f-9313-736dc30abe2e/ENCFF443JRW.bam ENCODE3 GRCh38 archived low read length ENCFF207FGO bam bam alignments GRCh38 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAV/, /files/ENCFF643CGH/ 838699605 ENCODE Processing Pipeline 8a630a50956f96a04fc045e82c1e6b27 https://www.encodeproject.org/files/ENCFF207FGO/@@download/ENCFF207FGO.bam released s3://encode-public/2016/08/09/787e33ca-302b-49f4-be4d-6f0db081378a/ENCFF207FGO.bam ENCODE3 GRCh38 archived low read length ENCFF939DCX bam bam alignments hg19 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAV/, /files/ENCFF807MUK/ 839007469 ENCODE Processing Pipeline bb73fca7301c69fbe979971bfd534225 https://www.encodeproject.org/files/ENCFF939DCX/@@download/ENCFF939DCX.bam released s3://encode-public/2016/11/13/cfaca2cf-03c1-4432-b766-75897cd2f5bb/ENCFF939DCX.bam ENCODE3 hg19 archived low read length ENCFF970LXF bam bam unfiltered alignments hg19 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HAV/, /files/ENCFF807MUK/ 1177229733 ENCODE Processing Pipeline 6361c930219b6d186cd5f7d6c869278b https://www.encodeproject.org/files/ENCFF970LXF/@@download/ENCFF970LXF.bam released s3://encode-public/2016/11/13/fb461759-6ca1-4cb0-9a7b-eaaee5e6ead9/ENCFF970LXF.bam ENCODE3 hg19 archived low read length ENCFF221QHX bam bam unfiltered alignments GRCh38 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAV/ 1155490487 ENCODE Processing Pipeline 85d151d9b16fe11ce6b35cefdcf6acf4 https://www.encodeproject.org/files/ENCFF221QHX/@@download/ENCFF221QHX.bam released s3://encode-public/2020/09/03/7820035a-f37f-4259-862a-43388b2775bc/ENCFF221QHX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF827IPX bam bam alignments GRCh38 ENCSR000DQO Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAV/ 912519602 ENCODE Processing Pipeline 8c2e88a4d9d22d2cf8353376be01ddaa https://www.encodeproject.org/files/ENCFF827IPX/@@download/ENCFF827IPX.bam released s3://encode-public/2020/09/03/537a38a1-cda3-4ec1-813b-e572bad2293f/ENCFF827IPX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001HUN bigWig bigWig raw signal hg19 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HUO/ 229687088 John Stamatoyannopoulos, UW 80a3a6c4b56da7cbd88afacd46fd8635 https://www.encodeproject.org/files/ENCFF001HUN/@@download/ENCFF001HUN.bigWig archived s3://encode-public/2011/06/25/fc027879-dba5-472e-8f3b-7f56efefd386/ENCFF001HUN.bigWig Lab custom hg19 archived low read length ENCFF001HUO bam bam alignments hg19 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVB/ 1293738339 John Stamatoyannopoulos, UW 68138205d5dc967e206d59aae202213f https://www.encodeproject.org/files/ENCFF001HUO/@@download/ENCFF001HUO.bam archived s3://encode-public/2011/06/25/b30c7783-e175-4c7f-98a0-40b3dfb17e26/ENCFF001HUO.bam Lab custom hg19 archived low read length ENCFF001HVB fastq fastq reads ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1333327989 John Stamatoyannopoulos, UW 215c524269167ab5a65bcc1fa7365b1d https://www.encodeproject.org/files/ENCFF001HVB/@@download/ENCFF001HVB.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/55d6fb4c-a0b7-4ec2-9720-8ff6d612ca30/ENCFF001HVB.fastq.gz low read length ENCFF504UBQ bam bam unfiltered alignments GRCh38 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVB/, /files/ENCFF643CGH/ 1609540639 ENCODE Processing Pipeline 99ca870e12b3664817692759e0fa9070 https://www.encodeproject.org/files/ENCFF504UBQ/@@download/ENCFF504UBQ.bam released s3://encode-public/2016/08/09/9e4c3ae0-9688-4009-9383-5a0ef33161be/ENCFF504UBQ.bam ENCODE3 GRCh38 archived low read length ENCFF312FHK bam bam alignments GRCh38 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVB/, /files/ENCFF643CGH/ 1196893730 ENCODE Processing Pipeline e7dd115dcf7dc660db17c9684d6fedca https://www.encodeproject.org/files/ENCFF312FHK/@@download/ENCFF312FHK.bam released s3://encode-public/2016/08/09/b4fa0683-8f25-48c8-98f3-574db95fc264/ENCFF312FHK.bam ENCODE3 GRCh38 archived low read length ENCFF853WVC bam bam unfiltered alignments hg19 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVB/, /files/ENCFF807MUK/ 1600994694 ENCODE Processing Pipeline 17b489aab7410365b7b133f2f844bb87 https://www.encodeproject.org/files/ENCFF853WVC/@@download/ENCFF853WVC.bam released s3://encode-public/2016/11/13/fd7b4d86-3f49-4ae4-b166-21459d9e6beb/ENCFF853WVC.bam ENCODE3 hg19 archived low read length ENCFF010VRA bam bam alignments hg19 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVB/, /files/ENCFF807MUK/ 1197184873 ENCODE Processing Pipeline 4f226889102311863fd97908386a3eee https://www.encodeproject.org/files/ENCFF010VRA/@@download/ENCFF010VRA.bam released s3://encode-public/2016/11/13/fabdddc6-1451-4358-b06d-df88f5b9d482/ENCFF010VRA.bam ENCODE3 hg19 archived low read length ENCFF660DHO bam bam alignments GRCh38 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HVB/ 1292481443 ENCODE Processing Pipeline 2e7874d990df03f36271444b8e072f54 https://www.encodeproject.org/files/ENCFF660DHO/@@download/ENCFF660DHO.bam released s3://encode-public/2020/09/03/24e88af6-92ef-4d73-83c0-91bd88f4da8f/ENCFF660DHO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF926CID bam bam unfiltered alignments GRCh38 ENCSR000DWO Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HVB/ 1580660532 ENCODE Processing Pipeline 34feb080d7dd463dd36656fc9e462120 https://www.encodeproject.org/files/ENCFF926CID/@@download/ENCFF926CID.bam released s3://encode-public/2020/09/03/a4e8a3b4-fa64-4f1e-9a09-8cf478566717/ENCFF926CID.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000RNS bam bam alignments hg19 ENCSR000DKQ Control ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 35 369077299 Vishwanath Iyer, UTA 0b4fb0bc2ae331e5bf3ee3cfcb534da4 https://www.encodeproject.org/files/ENCFF000RNS/@@download/ENCFF000RNS.bam archived s3://encode-public/2012/07/26/da29164c-2a11-40eb-9d9a-349b168d98a6/ENCFF000RNS.bam Lab custom hg19 archived extremely low read depth ENCFF000RNT bigWig bigWig signal hg19 ENCSR000DKQ Control ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 3323886752 Vishwanath Iyer, UTA 212ecb150e275aae6aad859ae8d20881 https://www.encodeproject.org/files/ENCFF000RNT/@@download/ENCFF000RNT.bigWig archived s3://encode-public/2012/07/26/de7a54b9-c3a5-410b-9d24-79ab9a878841/ENCFF000RNT.bigWig Lab custom hg19 archived extremely low read depth ENCFF000ROO fastq fastq reads ENCSR000DKQ Control ChIP-seq /human-donors/ENCDO000ABI/ EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 446533379 Vishwanath Iyer, UTA 9598a3d4b33281779ad560259fd1682a https://www.encodeproject.org/files/ENCFF000ROO/@@download/ENCFF000ROO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/1b837a3b-bb3a-4644-81f7-1587562f1e4b/ENCFF000ROO.fastq.gz extremely low read depth ENCFF326NSK bam bam unfiltered alignments hg19 ENCSR000DKQ Control ChIP-seq /human-donors/ENCDO000ABI/ EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000ROO/ 519469582 ENCODE Processing Pipeline c83b2a509a706bd38c2914b4511a3cd4 https://www.encodeproject.org/files/ENCFF326NSK/@@download/ENCFF326NSK.bam released s3://encode-public/2016/12/03/20e4e1b3-5a88-4f60-a026-27cb50f7ad81/ENCFF326NSK.bam ENCODE3 hg19 archived extremely low read depth ENCFF552LHI bam bam unfiltered alignments GRCh38 ENCSR000DKQ Control ChIP-seq /human-donors/ENCDO000ABI/ EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000ROO/ 520890451 ENCODE Processing Pipeline 417a46c7382e75da37ba023b38a3e35c https://www.encodeproject.org/files/ENCFF552LHI/@@download/ENCFF552LHI.bam released s3://encode-public/2016/12/03/be6a98e8-828e-4409-8f4a-f2831914d2ce/ENCFF552LHI.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF384QVL bam bam alignments hg19 ENCSR000DKQ Control ChIP-seq /human-donors/ENCDO000ABI/ EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000ROO/ 202756487 ENCODE Processing Pipeline e7e7e4be49286768262ba68e2ead558d https://www.encodeproject.org/files/ENCFF384QVL/@@download/ENCFF384QVL.bam released s3://encode-public/2016/12/03/6cfe82da-f7cb-46e5-b6aa-20193e65c5e9/ENCFF384QVL.bam ENCODE3 hg19 archived extremely low read depth ENCFF812UUO bam bam alignments GRCh38 ENCSR000DKQ Control ChIP-seq /human-donors/ENCDO000ABI/ EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000ROO/ 203152181 ENCODE Processing Pipeline 679f2a4a49da3405ec679dfbb992c865 https://www.encodeproject.org/files/ENCFF812UUO/@@download/ENCFF812UUO.bam released s3://encode-public/2016/12/03/42248a66-8672-414b-b85a-bf0642fb1d0f/ENCFF812UUO.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF950YXL bam bam unfiltered alignments GRCh38 ENCSR000DKQ Control ChIP-seq /human-donors/ENCDO000ABI/ EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000ROO/, /files/ENCFF110MCL/ 537294007 ENCODE Processing Pipeline 896d8d62490eff9a338ebfba41add395 https://www.encodeproject.org/files/ENCFF950YXL/@@download/ENCFF950YXL.bam released s3://encode-public/2020/09/03/5781ac92-16a6-4e0d-b5ea-b38e6e8fb88b/ENCFF950YXL.bam ENCODE4 v1.5.1 GRCh38 released extremely low read depth ENCFF110WFZ bam bam alignments GRCh38 ENCSR000DKQ Control ChIP-seq /human-donors/ENCDO000ABI/ EFO:0005334 GM10248 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000ROO/, /files/ENCFF110MCL/ 186324295 ENCODE Processing Pipeline 03a406068b2af6a646b4fefe67b7145c https://www.encodeproject.org/files/ENCFF110WFZ/@@download/ENCFF110WFZ.bam released s3://encode-public/2020/09/03/6d6e7aed-7ebd-414e-9365-6d084dedcece/ENCFF110WFZ.bam ENCODE4 v1.5.1 GRCh38 released extremely low read depth ENCFF001HYV bam bam alignments hg19 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HZB/ 608358824 John Stamatoyannopoulos, UW ad9237429f19d8eba7252c7698b67679 https://www.encodeproject.org/files/ENCFF001HYV/@@download/ENCFF001HYV.bam archived s3://encode-public/2011/06/25/beb986a0-0ebe-491f-a3be-00ac8103333b/ENCFF001HYV.bam Lab custom hg19 archived low read depth, low read length ENCFF001HYW bigWig bigWig raw signal hg19 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 /files/ENCFF001HYV/ 146551252 John Stamatoyannopoulos, UW ee4b5484df221f252cc61435de6926a4 https://www.encodeproject.org/files/ENCFF001HYW/@@download/ENCFF001HYW.bigWig archived s3://encode-public/2011/06/25/ad8218ad-cb3d-4bfa-8c75-26d3f5422a1f/ENCFF001HYW.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HZB fastq fastq reads ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 single-ended 630154403 John Stamatoyannopoulos, UW 2a176e5dc3957a7dc549c4e77c381685 https://www.encodeproject.org/files/ENCFF001HZB/@@download/ENCFF001HZB.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/7a2fe1c8-4962-406f-af2d-403b1632c899/ENCFF001HZB.fastq.gz low read depth, low read length ENCFF036SIR bam bam unfiltered alignments GRCh38 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HZB/ 772320602 ENCODE Processing Pipeline 1db71260abb7d3d24947690aed321c4b https://www.encodeproject.org/files/ENCFF036SIR/@@download/ENCFF036SIR.bam released s3://encode-public/2016/08/09/5cb4b19d-78e4-4fb6-b180-90cbad1d98ad/ENCFF036SIR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF070KUR bam bam alignments GRCh38 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HZB/ 546842592 ENCODE Processing Pipeline 1e35e72784ddc634ecf55525dece253e https://www.encodeproject.org/files/ENCFF070KUR/@@download/ENCFF070KUR.bam released s3://encode-public/2016/08/09/58ac0979-de78-44f6-b050-70dc9734acbd/ENCFF070KUR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF790RGH bam bam unfiltered alignments hg19 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HZB/ 767916222 ENCODE Processing Pipeline 7619e73ccf8785e58218874b52ff54c9 https://www.encodeproject.org/files/ENCFF790RGH/@@download/ENCFF790RGH.bam released s3://encode-public/2016/11/13/73be81e7-5ad0-49fe-9b8d-468e10be123d/ENCFF790RGH.bam ENCODE3 hg19 archived low read depth, low read length ENCFF681UDE bam bam alignments hg19 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HZB/ 547104161 ENCODE Processing Pipeline 701f2226b9cd2d73df235a3ffc98a922 https://www.encodeproject.org/files/ENCFF681UDE/@@download/ENCFF681UDE.bam released s3://encode-public/2016/11/13/d7038113-55c5-497b-84fd-d9aad580abde/ENCFF681UDE.bam ENCODE3 hg19 archived low read depth, low read length ENCFF330GLK bam bam unfiltered alignments GRCh38 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HZB/ 752737615 ENCODE Processing Pipeline 26e60138cbe53bf94a32233e00c6a75f https://www.encodeproject.org/files/ENCFF330GLK/@@download/ENCFF330GLK.bam released s3://encode-public/2020/09/03/4a51ba19-b165-497b-ba6d-93c4f1a1eb9c/ENCFF330GLK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF889IUS bam bam alignments GRCh38 ENCSR000DYA Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HZB/ 595676166 ENCODE Processing Pipeline 32e6dd0f3e64b9816e3b6e3e2922e646 https://www.encodeproject.org/files/ENCFF889IUS/@@download/ENCFF889IUS.bam released s3://encode-public/2020/09/03/995808d6-bdd4-4da2-9915-301e574a6046/ENCFF889IUS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000QEY bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000QFG/ 2399225163 Richard Myers, HAIB d4399654bd1f418ba1e01f948bac319a https://www.encodeproject.org/files/ENCFF000QEY/@@download/ENCFF000QEY.bam archived s3://encode-public/2012/01/23/42a0ac28-3ed3-47d5-b852-5af7b8fcd7f1/ENCFF000QEY.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFA bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QFJ/ 1982287753 Richard Myers, HAIB 3e7a7e1bc2dcf87dafc63aa28351911b https://www.encodeproject.org/files/ENCFF000QFA/@@download/ENCFF000QFA.bam archived s3://encode-public/2012/01/23/6faa3b97-0cd6-4a91-8377-677601a4deff/ENCFF000QFA.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFB bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF000QFI/ 1378027130 Richard Myers, HAIB 384abe26666169125620aaad70d40853 https://www.encodeproject.org/files/ENCFF000QFB/@@download/ENCFF000QFB.bam archived s3://encode-public/2012/01/23/b2eebce7-4c13-4d3b-9b86-17f3799f81a8/ENCFF000QFB.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFC bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 50 /files/ENCFF000QFK/ 1734275416 Richard Myers, HAIB 50278fceb2f9e35b6fe20964b9dd3eac https://www.encodeproject.org/files/ENCFF000QFC/@@download/ENCFF000QFC.bam archived s3://encode-public/2012/01/23/fff386c8-7bd1-4325-9546-2bbb7bf81048/ENCFF000QFC.bam Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFD bigWig bigWig raw signal hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 10589714 Richard Myers, HAIB e47c83821afea7a5ee82321147479d44 https://www.encodeproject.org/files/ENCFF000QFD/@@download/ENCFF000QFD.bigWig archived s3://encode-public/2012/01/23/37668bfb-fdc1-4e6a-99ba-bb29d74dbc3f/ENCFF000QFD.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFE bigWig bigWig raw signal hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 11910586 Richard Myers, HAIB 311df1c5124049335aa02ca3f88e751f https://www.encodeproject.org/files/ENCFF000QFE/@@download/ENCFF000QFE.bigWig archived s3://encode-public/2012/01/23/36f6faf3-f412-4d70-8f2b-8ff3d062a7ba/ENCFF000QFE.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFF bigWig bigWig raw signal hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 150794852 Richard Myers, HAIB b9cb06b0118247be402b7a346eee4a2e https://www.encodeproject.org/files/ENCFF000QFF/@@download/ENCFF000QFF.bigWig archived s3://encode-public/2012/01/23/f32cfacb-37e4-449e-a5c9-fbd08e6d5e1e/ENCFF000QFF.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFG fastq fastq reads ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 2377146215 Richard Myers, HAIB 21836fef895893fa93d71704d4451f04 https://www.encodeproject.org/files/ENCFF000QFG/@@download/ENCFF000QFG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/5bde2282-ebb3-46f4-aa82-ae69936628b2/ENCFF000QFG.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF000QFH bigWig bigWig raw signal hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 301202544 Richard Myers, HAIB d924b384c1436417fdfb110d5b39fa40 https://www.encodeproject.org/files/ENCFF000QFH/@@download/ENCFF000QFH.bigWig archived s3://encode-public/2012/01/23/8c177f4c-1bd3-4ccb-8c37-5a7f46078124/ENCFF000QFH.bigWig Lab custom hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF000QFI fastq fastq reads ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 single-ended 1371936728 Richard Myers, HAIB e625da2f5473290674459c818c555777 https://www.encodeproject.org/files/ENCFF000QFI/@@download/ENCFF000QFI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/bff35e97-c5cf-41a6-a601-298d61d04a5f/ENCFF000QFI.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF000QFJ fastq fastq reads ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 single-ended 1883741061 Richard Myers, HAIB f09c019113f05e0bc1f95dc2d3986cc5 https://www.encodeproject.org/files/ENCFF000QFJ/@@download/ENCFF000QFJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/bbf972e3-46ee-46de-92ae-9a30e948ed16/ENCFF000QFJ.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF000QFK fastq fastq reads ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 50 single-ended 1777185239 Richard Myers, HAIB 08745a2c50fb397f25bb3038f7ab8636 https://www.encodeproject.org/files/ENCFF000QFK/@@download/ENCFF000QFK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/04f55b68-4268-4ffc-8fad-f7cb955577ec/ENCFF000QFK.fastq.gz low read length, mixed read lengths, inconsistent platforms ENCFF356DRM bam bam unfiltered alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QFJ/, /files/ENCFF807MUK/ 2128691975 ENCODE Processing Pipeline a2b8757c9623b1d811e69098833db850 https://www.encodeproject.org/files/ENCFF356DRM/@@download/ENCFF356DRM.bam released s3://encode-public/2018/02/21/8b6a2e4c-8b30-41a6-be01-f055c7ecee7d/ENCFF356DRM.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF654VKJ bam bam unfiltered alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF000QFI/, /files/ENCFF807MUK/ 1485766078 ENCODE Processing Pipeline 158072afb45a73b08c18c6ebb9b80816 https://www.encodeproject.org/files/ENCFF654VKJ/@@download/ENCFF654VKJ.bam released s3://encode-public/2018/02/21/4eaa3140-1c5d-4ec4-85a7-ef8d5d45da56/ENCFF654VKJ.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF090COJ bam bam unfiltered alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000QFG/ 2628792288 ENCODE Processing Pipeline e534d19bd04bb13e1839150667e7eb47 https://www.encodeproject.org/files/ENCFF090COJ/@@download/ENCFF090COJ.bam released s3://encode-public/2018/02/22/ad4bb9e0-9414-44d1-904a-c5c74a879d48/ENCFF090COJ.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF806NNA bam bam unfiltered alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 50 /files/ENCFF807MUK/, /files/ENCFF000QFK/ 1877542937 ENCODE Processing Pipeline 1c51b3653738c3edb0a2d61428cde29d https://www.encodeproject.org/files/ENCFF806NNA/@@download/ENCFF806NNA.bam released s3://encode-public/2018/02/22/10bd9d14-4688-41b0-9fa4-79e42414109e/ENCFF806NNA.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF421LCN bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF000QFI/, /files/ENCFF807MUK/ 1149523892 ENCODE Processing Pipeline 58800c96727a15ffd696df2b587d59e2 https://www.encodeproject.org/files/ENCFF421LCN/@@download/ENCFF421LCN.bam released s3://encode-public/2016/03/03/13ea813f-0682-4043-94f9-0c1fed72bf8c/ENCFF421LCN.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF307FDV bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 50 /files/ENCFF807MUK/, /files/ENCFF000QFK/ 1442441057 ENCODE Processing Pipeline ce4ad40ec9fff98580067d6817276a5b https://www.encodeproject.org/files/ENCFF307FDV/@@download/ENCFF307FDV.bam released s3://encode-public/2016/03/03/b80eb1b6-fe6a-411d-bcb3-3a81bdc7790a/ENCFF307FDV.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF727JYL bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QFJ/, /files/ENCFF807MUK/ 1238092451 ENCODE Processing Pipeline 934a122b6352af109e0683811fd1167f https://www.encodeproject.org/files/ENCFF727JYL/@@download/ENCFF727JYL.bam released s3://encode-public/2016/03/03/1a06b72b-e3e5-49ce-a3fb-5ac564a18e67/ENCFF727JYL.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF522HDC bam bam alignments hg19 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000QFG/ 1715421457 ENCODE Processing Pipeline 9f9e39c0ee02da6ad91c87b28ac5af84 https://www.encodeproject.org/files/ENCFF522HDC/@@download/ENCFF522HDC.bam released s3://encode-public/2016/03/03/50db3baa-95f1-4312-8889-4f9bc63d7d37/ENCFF522HDC.bam ENCODE3 hg19 archived low read length, mixed read lengths, inconsistent platforms ENCFF879QVR bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF000QFI/, /files/ENCFF643CGH/ 1488697031 ENCODE Processing Pipeline ed6a60df8a867cc7710a103c2706e8f5 https://www.encodeproject.org/files/ENCFF879QVR/@@download/ENCFF879QVR.bam released s3://encode-public/2016/10/09/7ef40ad3-1d6a-4395-bd71-70ca3db6c0db/ENCFF879QVR.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF555KFK bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 50 /files/ENCFF643CGH/, /files/ENCFF000QFK/ 1880526628 ENCODE Processing Pipeline f2e661c8f1fa57c389e53d1bfc7c9e21 https://www.encodeproject.org/files/ENCFF555KFK/@@download/ENCFF555KFK.bam released s3://encode-public/2016/10/09/4e8cfa4c-894e-41eb-8c29-8ba83326f931/ENCFF555KFK.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF312LXY bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QFJ/, /files/ENCFF643CGH/ 2136207488 ENCODE Processing Pipeline bed33cc2ffffb9066fa50ccb1598b287 https://www.encodeproject.org/files/ENCFF312LXY/@@download/ENCFF312LXY.bam released s3://encode-public/2016/10/09/d6552f8d-d1b3-4dd3-92cd-7323509b19f4/ENCFF312LXY.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF979RYH bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000QFG/ 2634319089 ENCODE Processing Pipeline 9241a3c93f49f416dd0b2f01257c05c6 https://www.encodeproject.org/files/ENCFF979RYH/@@download/ENCFF979RYH.bam released s3://encode-public/2016/10/09/fd9f3aeb-2077-45d6-8c21-6be677ef5f28/ENCFF979RYH.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF304AZH bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 50 /files/ENCFF000QFI/, /files/ENCFF643CGH/ 1149259153 ENCODE Processing Pipeline b4ec26fbd37d9e48497ceead1b6abcce https://www.encodeproject.org/files/ENCFF304AZH/@@download/ENCFF304AZH.bam released s3://encode-public/2016/10/09/8d33d5f0-bea7-47b0-8728-8f181fc56565/ENCFF304AZH.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF984QXA bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 50 /files/ENCFF643CGH/, /files/ENCFF000QFK/ 1442103782 ENCODE Processing Pipeline ac4f32090e0d4cf3f3437aad868f3c57 https://www.encodeproject.org/files/ENCFF984QXA/@@download/ENCFF984QXA.bam released s3://encode-public/2016/10/09/d726bd4a-5f8a-45cd-a025-7f50e60e32c9/ENCFF984QXA.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF533FQH bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QFJ/, /files/ENCFF643CGH/ 1244484718 ENCODE Processing Pipeline ead1f71d956a8a9c4c87252a37e632eb https://www.encodeproject.org/files/ENCFF533FQH/@@download/ENCFF533FQH.bam released s3://encode-public/2016/10/09/e68ea7a8-2dae-4021-96b7-cd00186076e1/ENCFF533FQH.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF836OEO bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000QFG/ 1714615667 ENCODE Processing Pipeline edc818024271415d46fd52f507b804f6 https://www.encodeproject.org/files/ENCFF836OEO/@@download/ENCFF836OEO.bam released s3://encode-public/2016/10/09/f49f1af0-83a3-4028-98f7-1c2a6e10d971/ENCFF836OEO.bam ENCODE3 GRCh38 archived low read length, mixed read lengths, inconsistent platforms ENCFF306OCX bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000QFG/ 2555947358 ENCODE Processing Pipeline 79596c4c7d3fd6cfc11b116de9e4574c https://www.encodeproject.org/files/ENCFF306OCX/@@download/ENCFF306OCX.bam released s3://encode-public/2020/10/27/ce91ca89-eb9c-4cda-91f7-3259725be5bf/ENCFF306OCX.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF113TEZ bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF000QFI/, /files/ENCFF110MCL/ 950922918 ENCODE Processing Pipeline b3d3b2ea2a3958d18e1a201c8af76765 https://www.encodeproject.org/files/ENCFF113TEZ/@@download/ENCFF113TEZ.bam released s3://encode-public/2020/10/27/b75c5f9f-f987-4d4b-b162-064194d3e171/ENCFF113TEZ.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF125AOF bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000QFK/ 1541968447 ENCODE Processing Pipeline 4726b48854f463abd20ecc0208351747 https://www.encodeproject.org/files/ENCFF125AOF/@@download/ENCFF125AOF.bam released s3://encode-public/2020/10/27/706bcb87-d947-4971-98de-70d9c91b8d33/ENCFF125AOF.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF162CGR bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QFJ/, /files/ENCFF110MCL/ 2057709641 ENCODE Processing Pipeline d28021e40aa7368de074f1bcc15867c9 https://www.encodeproject.org/files/ENCFF162CGR/@@download/ENCFF162CGR.bam released s3://encode-public/2020/10/27/0b0276d2-9f3b-4c52-97ad-67108c5c9f64/ENCFF162CGR.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF499FOV bam bam unfiltered alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF000QFI/, /files/ENCFF110MCL/ 1196319513 ENCODE Processing Pipeline bd5d39655c80adf4366e08f42c34c1c4 https://www.encodeproject.org/files/ENCFF499FOV/@@download/ENCFF499FOV.bam released s3://encode-public/2020/10/27/c78be102-e685-4ef6-9600-b1ce23a8075d/ENCFF499FOV.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF838ZUU bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000QFG/ 1849684015 ENCODE Processing Pipeline 3cc83459ff47b2804374713a7c0e5778 https://www.encodeproject.org/files/ENCFF838ZUU/@@download/ENCFF838ZUU.bam released s3://encode-public/2020/10/27/5d56709a-4ce6-46f0-9d66-260ef00beb45/ENCFF838ZUU.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF728MBI bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000QFJ/, /files/ENCFF110MCL/ 1370741367 ENCODE Processing Pipeline 24682f051b5b8d8782f89ac01a70299c https://www.encodeproject.org/files/ENCFF728MBI/@@download/ENCFF728MBI.bam released s3://encode-public/2020/10/27/b3932570-6237-4461-80ff-324d44c3539e/ENCFF728MBI.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF428XAM bam bam alignments GRCh38 ENCSR000BRJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2012-02-29 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000QFK/ 1239829524 ENCODE Processing Pipeline 8bb1f3948aa57b59810d97c8db01ebf1 https://www.encodeproject.org/files/ENCFF428XAM/@@download/ENCFF428XAM.bam released s3://encode-public/2020/10/27/9d4a5d06-fb85-426a-80cc-9d827b6f9e84/ENCFF428XAM.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths, inconsistent platforms ENCFF000RXD bam bam alignments hg19 ENCSR000DMD Control ChIP-seq UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 35 665232382 Vishwanath Iyer, UTA 3f675164d2ab9cf61fee87c6fdf8c19f https://www.encodeproject.org/files/ENCFF000RXD/@@download/ENCFF000RXD.bam archived s3://encode-public/2012/07/26/60faa04b-d6e5-446f-9fc4-6300ae268871/ENCFF000RXD.bam Lab custom hg19 archived insufficient read depth ENCFF000RXF bigWig bigWig signal hg19 ENCSR000DMD Control ChIP-seq UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 4260081081 Vishwanath Iyer, UTA 950a5c86269ca0db5efe0ea733600958 https://www.encodeproject.org/files/ENCFF000RXF/@@download/ENCFF000RXF.bigWig archived s3://encode-public/2012/07/26/75b81ce0-dad9-4cab-9621-1c5ed89b6a3f/ENCFF000RXF.bigWig Lab custom hg19 archived insufficient read depth ENCFF000RXR fastq fastq reads ENCSR000DMD Control ChIP-seq /human-donors/ENCDO007AAA/ UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 1095781630 Vishwanath Iyer, UTA c4386b4fd0d5e8c97a1adb4f3a791c6e https://www.encodeproject.org/files/ENCFF000RXR/@@download/ENCFF000RXR.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/f4d659b9-e30c-4f03-a936-2401291281da/ENCFF000RXR.fastq.gz insufficient read depth ENCFF273DTL bam bam unfiltered alignments GRCh38 ENCSR000DMD Control ChIP-seq /human-donors/ENCDO007AAA/ UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RXR/ 1250260027 ENCODE Processing Pipeline 6874b2e1d36a2977e37d110162821ffa https://www.encodeproject.org/files/ENCFF273DTL/@@download/ENCFF273DTL.bam released s3://encode-public/2017/04/14/d77c1c0d-9175-46a0-8458-dd7d08131844/ENCFF273DTL.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF441DOX bam bam alignments GRCh38 ENCSR000DMD Control ChIP-seq /human-donors/ENCDO007AAA/ UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RXR/ 469827679 ENCODE Processing Pipeline 7f0c29553b8b7e3dc3b1452415e9baec https://www.encodeproject.org/files/ENCFF441DOX/@@download/ENCFF441DOX.bam released s3://encode-public/2017/04/14/e373d16b-5a97-4e01-b289-406d66af00fa/ENCFF441DOX.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF716THH bam bam unfiltered alignments hg19 ENCSR000DMD Control ChIP-seq /human-donors/ENCDO007AAA/ UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RXR/ 1248268982 ENCODE Processing Pipeline 594a2269bb44bb4fb7c9f86d193ee23e https://www.encodeproject.org/files/ENCFF716THH/@@download/ENCFF716THH.bam released s3://encode-public/2017/07/05/c597fa03-26d4-4cb5-afe1-13c45398bc5e/ENCFF716THH.bam ENCODE3 hg19 archived insufficient read depth ENCFF597LOS bam bam alignments hg19 ENCSR000DMD Control ChIP-seq /human-donors/ENCDO007AAA/ UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RXR/ 469948833 ENCODE Processing Pipeline 69fcad1d00e01c3c0f72d5d4ad49bd3f https://www.encodeproject.org/files/ENCFF597LOS/@@download/ENCFF597LOS.bam released s3://encode-public/2017/07/05/ebb11afb-b0fe-44fa-b576-fc842d0a8f3a/ENCFF597LOS.bam ENCODE3 hg19 archived insufficient read depth ENCFF361CDH bam bam alignments GRCh38 ENCSR000DMD Control ChIP-seq /human-donors/ENCDO007AAA/ UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RXR/, /files/ENCFF110MCL/ 450206897 ENCODE Processing Pipeline b572aa99d44733c2aeff2f52d0cd7c32 https://www.encodeproject.org/files/ENCFF361CDH/@@download/ENCFF361CDH.bam released s3://encode-public/2020/09/03/9711662c-e954-4c7f-9059-995e9a8eaaa5/ENCFF361CDH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF048HZN bam bam unfiltered alignments GRCh38 ENCSR000DMD Control ChIP-seq /human-donors/ENCDO007AAA/ UBERON:0002113 kidney tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RXR/, /files/ENCFF110MCL/ 1265577604 ENCODE Processing Pipeline ad737759fc2f032c4b53bdfecdd2a3f5 https://www.encodeproject.org/files/ENCFF048HZN/@@download/ENCFF048HZN.bam released s3://encode-public/2020/09/03/94a85668-4925-41c3-baf2-5cb5f6d9fa46/ENCFF048HZN.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF755MKA fastq fastq reads ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 310697054 Michael Snyder, Stanford eef81dcab906d086eb5bc9e8c6283c82 https://www.encodeproject.org/files/ENCFF755MKA/@@download/ENCFF755MKA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bb16e250-4b89-4019-9938-b35a6470e03d/ENCFF755MKA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF411RSK fastq fastq reads ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 394797630 Michael Snyder, Stanford 3d148ace9224c24fdf0889dc3c445cb6 https://www.encodeproject.org/files/ENCFF411RSK/@@download/ENCFF411RSK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1671517d-8511-45f2-bb92-5b8380f6f178/ENCFF411RSK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF610REA bam bam alignments ce10 ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF411RSK/, /files/ENCFF755MKA/, /files/ENCFF987UMF/ 925713344 Kevin White, UChicago d3d2e49ecd43018475de8af4a9e0c957 https://www.encodeproject.org/files/ENCFF610REA/@@download/ENCFF610REA.bam released s3://encode-public/2016/10/18/62f2cbe6-c1c2-4e30-bd29-0d45a3332764/ENCFF610REA.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF246XPW bam bam alignments ce11 ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF411RSK/, /files/ENCFF755MKA/, /files/ENCFF586MOL/ 926777736 Kevin White, UChicago 7624700a1245f91f7f571557149fe4c1 https://www.encodeproject.org/files/ENCFF246XPW/@@download/ENCFF246XPW.bam released s3://encode-public/2016/10/19/0a704f63-42b3-4a45-8e6e-b3c55feaab40/ENCFF246XPW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF363TJD bigWig bigWig read-depth normalized signal ce10 ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF610REA/ 9998781 Kevin White, UChicago ac25bca98bac55cb436f54b7c8712656 https://www.encodeproject.org/files/ENCFF363TJD/@@download/ENCFF363TJD.bigWig released s3://encode-public/2016/10/20/f361f1d3-1780-4d19-8244-f7b7dfa26a7e/ENCFF363TJD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF338ZTM bigWig bigWig signal of unique reads ce10 ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF610REA/ 9989776 Kevin White, UChicago 5bdc986566dc1da2c97f129149d965ba https://www.encodeproject.org/files/ENCFF338ZTM/@@download/ENCFF338ZTM.bigWig released s3://encode-public/2016/10/20/530192e2-0273-490a-b0ba-b6caa74c32f2/ENCFF338ZTM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF005GCM bigWig bigWig signal of unique reads ce11 ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF246XPW/ 9985827 Kevin White, UChicago 940831031ec4ea62482c9a5e96d1a3ba https://www.encodeproject.org/files/ENCFF005GCM/@@download/ENCFF005GCM.bigWig released s3://encode-public/2016/10/21/aea72c9d-8673-479a-9d51-ced9aa5b45da/ENCFF005GCM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF582EKU bigWig bigWig read-depth normalized signal ce11 ENCSR844JGM Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF246XPW/ 9985042 Kevin White, UChicago 6bf93daee6de8d57a0d7fe7b759ffbb7 https://www.encodeproject.org/files/ENCFF582EKU/@@download/ENCFF582EKU.bigWig released s3://encode-public/2016/10/21/90f731e2-5f1e-4e86-9c69-90f701a8707d/ENCFF582EKU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF534DEA fastq fastq reads ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 82282343 Michael Snyder, Stanford 946167ba7ea990da8faf88b1e220e8d8 https://www.encodeproject.org/files/ENCFF534DEA/@@download/ENCFF534DEA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/6ec23449-c38a-4d59-a2b5-ad14aa488103/ENCFF534DEA.fastq.gz mixed read lengths, inconsistent platforms ENCFF990OUB fastq fastq reads ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 31 single-ended 92569548 Kevin White, UChicago 5a8d9e8680255481d26efd28a5f6e21b https://www.encodeproject.org/files/ENCFF990OUB/@@download/ENCFF990OUB.fastq.gz Illumina Genome Analyzer /files/ENCFF382SLK/, /files/ENCFF620PYT/ released s3://encode-public/2018/01/09/f5335b6d-88e0-47b2-9613-4838bbbfc92e/ENCFF990OUB.fastq.gz mixed read lengths, inconsistent platforms ENCFF280KYG fastq fastq reads ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 31 single-ended 40606030 Kevin White, UChicago 6b26869f346be9c3825712d5abf060d1 https://www.encodeproject.org/files/ENCFF280KYG/@@download/ENCFF280KYG.fastq.gz Illumina Genome Analyzer /files/ENCFF382SLK/, /files/ENCFF620PYT/ released s3://encode-public/2018/01/09/87336ff1-4e66-4f41-a3f3-4c969fb2dd58/ENCFF280KYG.fastq.gz mixed read lengths, inconsistent platforms ENCFF425LNJ fastq fastq reads ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 31 single-ended 76725522 Kevin White, UChicago b4d2e7a8059b3bae69cda0bfc175bc4f https://www.encodeproject.org/files/ENCFF425LNJ/@@download/ENCFF425LNJ.fastq.gz Illumina Genome Analyzer /files/ENCFF382SLK/, /files/ENCFF620PYT/ released s3://encode-public/2018/01/09/1b1b1af1-b29b-4fcd-9020-986affd7beeb/ENCFF425LNJ.fastq.gz mixed read lengths, inconsistent platforms ENCFF063ZRM fastq fastq reads ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 35 single-ended 110608121 Kevin White, UChicago b68fbe749868396a917bb8a470c5ee37 https://www.encodeproject.org/files/ENCFF063ZRM/@@download/ENCFF063ZRM.fastq.gz Illumina Genome Analyzer /files/ENCFF382SLK/, /files/ENCFF620PYT/ released s3://encode-public/2018/01/09/f201f3d5-9d95-4881-acad-42cb3f2cae63/ENCFF063ZRM.fastq.gz mixed read lengths, inconsistent platforms ENCFF018XPS bam bam alignments ce10 ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF990OUB/, /files/ENCFF063ZRM/, /files/ENCFF280KYG/, /files/ENCFF425LNJ/, /files/ENCFF987UMF/ 363045784 Kevin White, UChicago bbf36c2b29b28264f3113bc1a948113e https://www.encodeproject.org/files/ENCFF018XPS/@@download/ENCFF018XPS.bam released s3://encode-public/2018/01/09/daf8e61a-fd5c-4412-9f3f-78a80d40a5ba/ENCFF018XPS.bam Lab custom ce10 archived mixed read lengths, inconsistent platforms ENCFF776GWU bam bam alignments ce11 ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF990OUB/, /files/ENCFF063ZRM/, /files/ENCFF280KYG/, /files/ENCFF425LNJ/, /files/ENCFF586MOL/ 363312800 Kevin White, UChicago d26c40ccb5941d89305543e1dbc9b9c4 https://www.encodeproject.org/files/ENCFF776GWU/@@download/ENCFF776GWU.bam released s3://encode-public/2018/01/09/0af28b26-b4bd-4139-966c-9f8f66a832c2/ENCFF776GWU.bam Lab custom ce11 released mixed read lengths, inconsistent platforms ENCFF035LSE bigWig bigWig signal of unique reads ce10 ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF018XPS/ 10102680 Kevin White, UChicago cb135ae2639d965e6280068d25aa892e https://www.encodeproject.org/files/ENCFF035LSE/@@download/ENCFF035LSE.bigWig released s3://encode-public/2018/01/09/f522ed42-8658-4ab3-81e6-2c8d51690499/ENCFF035LSE.bigWig Lab custom ce10 archived mixed read lengths, inconsistent platforms ENCFF660ZZE bigWig bigWig read-depth normalized signal ce10 ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF018XPS/ 10097337 Kevin White, UChicago 50bf5415433e6c52ed62ee026f662528 https://www.encodeproject.org/files/ENCFF660ZZE/@@download/ENCFF660ZZE.bigWig released s3://encode-public/2018/01/09/2b0b3b18-a46e-4c4a-befd-4ce1007ba99c/ENCFF660ZZE.bigWig Lab custom ce10 archived mixed read lengths, inconsistent platforms ENCFF824LRE bigWig bigWig signal of unique reads ce11 ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF776GWU/ 10107061 Kevin White, UChicago df7938869c726c23968f4f02a87429cd https://www.encodeproject.org/files/ENCFF824LRE/@@download/ENCFF824LRE.bigWig released s3://encode-public/2018/01/09/d2df9044-4e9b-43c3-9e8b-7ca499cd4439/ENCFF824LRE.bigWig Lab custom ce11 released mixed read lengths, inconsistent platforms ENCFF020ZXU bigWig bigWig read-depth normalized signal ce11 ENCSR316CFG Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF776GWU/ 10100370 Kevin White, UChicago 5c74cc85e032347b753952ecba7a655a https://www.encodeproject.org/files/ENCFF020ZXU/@@download/ENCFF020ZXU.bigWig released s3://encode-public/2018/01/09/93b01e26-dbfe-47d6-8ac8-56a7d186d049/ENCFF020ZXU.bigWig Lab custom ce11 released mixed read lengths, inconsistent platforms ENCFF001IDR bam bam alignments mm9 ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 /files/ENCFF001IDS/, /files/ENCFF001IDT/, /files/ENCFF001IDU/, /files/ENCFF001IDV/ 1119305700 Barbara Wold, Caltech 6b921a7ed23ea98998f62f2163ea8791 https://www.encodeproject.org/files/ENCFF001IDR/@@download/ENCFF001IDR.bam archived s3://encode-public/2011/08/11/b0a81658-175d-450f-9eed-9ff038396e06/ENCFF001IDR.bam Lab custom mm9 archived insufficient read length, insufficient read depth ENCFF001IDS fastq fastq reads ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 single-ended 392692266 Barbara Wold, Caltech 30a1184a3bace1c795ef8f49a674d5cd https://www.encodeproject.org/files/ENCFF001IDS/@@download/ENCFF001IDS.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/b6b9ff27-bd6d-49f0-b65d-60c5173e2b09/ENCFF001IDS.fastq.gz insufficient read length, insufficient read depth ENCFF001IDW bigWig bigWig signal mm9 ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 /files/ENCFF001IDR/ 79478588 Barbara Wold, Caltech f5e9a583aeb5315b25c8be8a3c639bac https://www.encodeproject.org/files/ENCFF001IDW/@@download/ENCFF001IDW.bigWig archived s3://encode-public/2011/08/11/38dfc618-1235-4bd7-9309-b714dc5d031b/ENCFF001IDW.bigWig Lab custom mm9 archived insufficient read length, insufficient read depth ENCFF001IDU fastq fastq reads ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 single-ended 223912419 Barbara Wold, Caltech 57317cab1fbb9777ac9a8742d9e624ab https://www.encodeproject.org/files/ENCFF001IDU/@@download/ENCFF001IDU.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/521ade93-34c3-4157-aebd-bc59ab42fca7/ENCFF001IDU.fastq.gz insufficient read length, insufficient read depth ENCFF001IDV fastq fastq reads ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 single-ended 197674966 Barbara Wold, Caltech 9d477bd290ad230bba21755f63944f14 https://www.encodeproject.org/files/ENCFF001IDV/@@download/ENCFF001IDV.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/53ca9386-329f-450d-9c05-a7cc6a7b0664/ENCFF001IDV.fastq.gz insufficient read length, insufficient read depth ENCFF001IDT fastq fastq reads ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 single-ended 214876284 Barbara Wold, Caltech 824d595a032705e80bc580bce271f971 https://www.encodeproject.org/files/ENCFF001IDT/@@download/ENCFF001IDT.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/8/11/d080feb3-a518-4531-b4e9-e40f54dfae21/ENCFF001IDT.fastq.gz insufficient read length, insufficient read depth ENCFF230ZXB bam bam unfiltered alignments mm10-minimal ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 /files/ENCFF001IDU/, /files/ENCFF001IDT/, /files/ENCFF001IDV/, /files/ENCFF001IDS/, /files/ENCFF806TVZ/ 1177837791 ENCODE Processing Pipeline dc0f58bad75e9586056d34be7f9675a1 https://www.encodeproject.org/files/ENCFF230ZXB/@@download/ENCFF230ZXB.bam archived s3://encode-public/2015/11/18/68af6b2e-94d3-4d52-812c-e0f2a0d113b5/ENCFF230ZXB.bam ENCODE3 mm10-minimal archived insufficient read length, insufficient read depth ENCFF414LJU bam bam unfiltered alignments mm10 ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 /files/ENCFF018NEO/, /files/ENCFF001IDS/, /files/ENCFF001IDU/, /files/ENCFF001IDT/, /files/ENCFF001IDV/ 1178363780 ENCODE Processing Pipeline c7cfd130e9b10a209d02b138c62da6e3 https://www.encodeproject.org/files/ENCFF414LJU/@@download/ENCFF414LJU.bam released s3://encode-public/2016/10/26/e57d0dca-5db8-4019-969a-862914e2ac65/ENCFF414LJU.bam ENCODE3 mm10 archived insufficient read length, insufficient read depth ENCFF122QLV bam bam alignments mm10 ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 /files/ENCFF018NEO/, /files/ENCFF001IDS/, /files/ENCFF001IDU/, /files/ENCFF001IDT/, /files/ENCFF001IDV/ 402355030 ENCODE Processing Pipeline 312e0810511dcc638f8a80dc996b67b6 https://www.encodeproject.org/files/ENCFF122QLV/@@download/ENCFF122QLV.bam released s3://encode-public/2016/10/26/7beb9090-dc3d-463d-b452-0be06df32d43/ENCFF122QLV.bam ENCODE3 mm10 archived insufficient read length, insufficient read depth ENCFF636KGJ bam bam unfiltered alignments mm10 ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 /files/ENCFF001IDV/, /files/ENCFF309GLL/, /files/ENCFF001IDT/, /files/ENCFF001IDS/, /files/ENCFF001IDU/ 1161585240 ENCODE Processing Pipeline c2ddb7b9a7d36cf0ff4328a76cf12970 https://www.encodeproject.org/files/ENCFF636KGJ/@@download/ENCFF636KGJ.bam released s3://encode-public/2020/11/06/01328a02-8797-4539-88d0-7d27398a916a/ENCFF636KGJ.bam ENCODE4 v1.6.1 mm10 released insufficient read length, insufficient read depth ENCFF204HMY bam bam alignments mm10 ENCSR000AJQ Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-28 ENCODE see document 1 1_1 32 /files/ENCFF001IDV/, /files/ENCFF309GLL/, /files/ENCFF001IDT/, /files/ENCFF001IDS/, /files/ENCFF001IDU/ 450998598 ENCODE Processing Pipeline 0dd5848c899dac310fe9cd6f32988319 https://www.encodeproject.org/files/ENCFF204HMY/@@download/ENCFF204HMY.bam released s3://encode-public/2020/11/06/eac396bc-005e-4393-bac1-cb82b375e3ab/ENCFF204HMY.bam ENCODE4 v1.6.1 mm10 released insufficient read length, insufficient read depth ENCFF087KQG fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 paired-ended 1 /files/ENCFF010AGB/ 1809769269 Bradley Bernstein, Broad 37912780732d23963f36d7a1edb5a784 SRA:SRR5339346 https://www.encodeproject.org/files/ENCFF087KQG/@@download/ENCFF087KQG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/10/25fe00d9-c208-43fc-ab73-ce00a813dfee/ENCFF087KQG.fastq.gz ENCFF273UTA fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 paired-ended 2 /files/ENCFF267XUN/ 4556513799 Bradley Bernstein, Broad 183227b0ea6f86e3441f32af869a751b SRA:SRR5339345 https://www.encodeproject.org/files/ENCFF273UTA/@@download/ENCFF273UTA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/23/b32ed073-aa97-43b7-8301-816efa982418/ENCFF273UTA.fastq.gz ENCFF267XUN fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF273UTA/ 4469197440 Bradley Bernstein, Broad 9cc6cf50e4628c354e4ba38064bd2b6c SRA:SRR5339345 https://www.encodeproject.org/files/ENCFF267XUN/@@download/ENCFF267XUN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/23/4fc32635-6984-4aa6-87cd-299a0c4e70de/ENCFF267XUN.fastq.gz ENCFF010AGB fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 paired-ended 2 /files/ENCFF087KQG/ 1850215886 Bradley Bernstein, Broad 1fdacfcb31f4b3a90b1e1bf611232bc4 SRA:SRR5339346 https://www.encodeproject.org/files/ENCFF010AGB/@@download/ENCFF010AGB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/01/20/8e17b808-afa4-448b-9b61-be8230322e01/ENCFF010AGB.fastq.gz ENCFF449PDH bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF010AGB/, /files/ENCFF087KQG/, /files/ENCFF643CGH/ 4384195137 ENCODE Processing Pipeline 1ff723b483c740d7df5fb055b1294bb4 https://www.encodeproject.org/files/ENCFF449PDH/@@download/ENCFF449PDH.bam released s3://encode-public/2016/05/25/06cbac04-a3cc-491c-9e77-536caffc0a4a/ENCFF449PDH.bam ENCODE3 GRCh38 archived ENCFF408TVJ bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF010AGB/, /files/ENCFF087KQG/, /files/ENCFF643CGH/ 3677236221 ENCODE Processing Pipeline 15dcd49e7492a3629672615341c15cbf https://www.encodeproject.org/files/ENCFF408TVJ/@@download/ENCFF408TVJ.bam released s3://encode-public/2016/05/25/903b75ad-be2a-4b25-a45b-c3a82d8e0497/ENCFF408TVJ.bam ENCODE3 GRCh38 archived ENCFF809HFR bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF273UTA/, /files/ENCFF267XUN/ 10704238343 ENCODE Processing Pipeline 952767c5fed4e95d3d139f53d897f154 https://www.encodeproject.org/files/ENCFF809HFR/@@download/ENCFF809HFR.bam released s3://encode-public/2016/05/25/390ddfd9-5be1-484e-9b30-fb51728e7a8b/ENCFF809HFR.bam ENCODE3 GRCh38 archived ENCFF754UFV bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF273UTA/, /files/ENCFF267XUN/ 8357565933 ENCODE Processing Pipeline b090e4ed344cc0cbc462b57e3a34bb4a https://www.encodeproject.org/files/ENCFF754UFV/@@download/ENCFF754UFV.bam released s3://encode-public/2016/05/25/c137ad2b-786f-4362-91c9-b7cd936e1373/ENCFF754UFV.bam ENCODE3 GRCh38 archived ENCFF560TNV bam bam alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF010AGB/, /files/ENCFF087KQG/, /files/ENCFF807MUK/ 3673026570 ENCODE Processing Pipeline 2d77ba2438cb9d45e49b998e605fc291 https://www.encodeproject.org/files/ENCFF560TNV/@@download/ENCFF560TNV.bam released s3://encode-public/2016/11/10/1db43cd7-bcae-40ae-a468-def0f692162f/ENCFF560TNV.bam ENCODE3 hg19 archived ENCFF070HAY bam bam unfiltered alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF010AGB/, /files/ENCFF087KQG/, /files/ENCFF807MUK/ 4372904315 ENCODE Processing Pipeline 3a338603498b199b909d7e04343133b2 https://www.encodeproject.org/files/ENCFF070HAY/@@download/ENCFF070HAY.bam released s3://encode-public/2016/11/10/eb79a636-6e31-4bdc-93c1-cd823b42b4d1/ENCFF070HAY.bam ENCODE3 hg19 archived ENCFF006DKG bam bam unfiltered alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF273UTA/, /files/ENCFF267XUN/ 10676785282 ENCODE Processing Pipeline 071b38707f69ead2ddeee2361191c40e https://www.encodeproject.org/files/ENCFF006DKG/@@download/ENCFF006DKG.bam released s3://encode-public/2016/11/10/30f31f0e-2223-46d7-ad99-5595d3633547/ENCFF006DKG.bam ENCODE3 hg19 archived ENCFF269ZDG bam bam alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF273UTA/, /files/ENCFF267XUN/ 8348702525 ENCODE Processing Pipeline 3714b3f570d6408c1222efe3d3353c17 https://www.encodeproject.org/files/ENCFF269ZDG/@@download/ENCFF269ZDG.bam released s3://encode-public/2016/11/10/22aae861-742c-4b58-a479-1b8deac10a05/ENCFF269ZDG.bam ENCODE3 hg19 archived ENCFF237PRF bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF087KQG/, /files/ENCFF643CGH/ 1743289969 ENCODE Processing Pipeline a0013ccf02de45e41f051a2a481f0670 https://www.encodeproject.org/files/ENCFF237PRF/@@download/ENCFF237PRF.bam released s3://encode-public/2017/01/06/a856d332-c4cd-4934-a591-ac9769d21699/ENCFF237PRF.bam ENCODE3 GRCh38 archived ENCFF592YCC bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF087KQG/, /files/ENCFF643CGH/ 2158245227 ENCODE Processing Pipeline 6342a09f60e9bea5f03f68e21ba85959 https://www.encodeproject.org/files/ENCFF592YCC/@@download/ENCFF592YCC.bam released s3://encode-public/2017/01/06/cfccd42f-d4e7-4efb-a306-4609d5daa2e2/ENCFF592YCC.bam ENCODE3 GRCh38 archived ENCFF668FFE bam bam unfiltered alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF087KQG/, /files/ENCFF807MUK/ 2152352728 ENCODE Processing Pipeline df26ecab6e78cfcf031295b466770e3c https://www.encodeproject.org/files/ENCFF668FFE/@@download/ENCFF668FFE.bam released s3://encode-public/2017/01/06/7f23621d-9d06-4ab0-9f3a-216308f18f72/ENCFF668FFE.bam ENCODE3 hg19 archived ENCFF120PPJ bam bam alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF087KQG/, /files/ENCFF807MUK/ 1742128818 ENCODE Processing Pipeline 61a90bebfb0f10c5a2b88c4d8b7ed458 https://www.encodeproject.org/files/ENCFF120PPJ/@@download/ENCFF120PPJ.bam released s3://encode-public/2017/01/06/888b9bc9-938d-4839-b849-051e0b1d0f92/ENCFF120PPJ.bam ENCODE3 hg19 archived ENCFF788NYF bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF267XUN/ 5275911578 ENCODE Processing Pipeline df5bf55e9ad108d606684f8bcb950990 https://www.encodeproject.org/files/ENCFF788NYF/@@download/ENCFF788NYF.bam released s3://encode-public/2017/01/06/56dab529-cadf-48f4-a8ec-8806e59685bb/ENCFF788NYF.bam ENCODE3 GRCh38 archived ENCFF405ASR bam bam unfiltered alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF267XUN/ 5262526930 ENCODE Processing Pipeline 647f6b92cb9614fa8e9c1f0c5f01f9fc https://www.encodeproject.org/files/ENCFF405ASR/@@download/ENCFF405ASR.bam released s3://encode-public/2017/01/06/889c3374-1843-4708-a939-b0ce0aa48caa/ENCFF405ASR.bam ENCODE3 hg19 archived ENCFF992ZBS bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF267XUN/ 4056015389 ENCODE Processing Pipeline 63233b13abe98154e3c213c581a85d61 https://www.encodeproject.org/files/ENCFF992ZBS/@@download/ENCFF992ZBS.bam released s3://encode-public/2017/01/06/0e1f5e03-5d42-41dc-8655-ddeb06cbbecb/ENCFF992ZBS.bam ENCODE3 GRCh38 archived ENCFF558CXI bam bam alignments hg19 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF267XUN/ 4052820292 ENCODE Processing Pipeline da8a52be78145c3cc1d14c65acf192b3 https://www.encodeproject.org/files/ENCFF558CXI/@@download/ENCFF558CXI.bam released s3://encode-public/2017/01/06/dd368a84-ac7b-4055-8f32-f95b4e2fdeee/ENCFF558CXI.bam ENCODE3 hg19 archived ENCFF364HZK fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF005FTB/ /files/ENCFF267XUN/ 4402717155 Bradley Bernstein, Broad 9e0363eb965b51b39bd0fb78ddded04b https://www.encodeproject.org/files/ENCFF364HZK/@@download/ENCFF364HZK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2021/01/30/450bdee5-3d13-40cf-b4fc-7a519f0be653/ENCFF364HZK.fastq.gz ENCFF005FTB fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 paired-ended 2 /files/ENCFF364HZK/ /files/ENCFF273UTA/ 4488691616 Bradley Bernstein, Broad 9422984bcc548f4545604314fbd21b77 https://www.encodeproject.org/files/ENCFF005FTB/@@download/ENCFF005FTB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2021/01/30/594c7066-8186-461c-b9ed-0cc35088994c/ENCFF005FTB.fastq.gz ENCFF354HQX fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 paired-ended 1 /files/ENCFF950BVE/ /files/ENCFF087KQG/ 1783186084 Bradley Bernstein, Broad 5698ae9a5612681346be2730ea2c30c8 https://www.encodeproject.org/files/ENCFF354HQX/@@download/ENCFF354HQX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2021/01/30/b7926c80-6779-4490-8579-94f476e0b71d/ENCFF354HQX.fastq.gz ENCFF950BVE fastq fastq reads ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 paired-ended 2 /files/ENCFF354HQX/ /files/ENCFF010AGB/ 1823087449 Bradley Bernstein, Broad 907f1734c54d7ee14f690ad8c1d590db https://www.encodeproject.org/files/ENCFF950BVE/@@download/ENCFF950BVE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2021/01/30/cc1ce2c7-ea2a-40dd-a281-3601f40d6ce2/ENCFF950BVE.fastq.gz ENCFF471SFT bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF005FTB/, /files/ENCFF110MCL/, /files/ENCFF364HZK/ 10667970889 ENCODE Processing Pipeline 473c1781da68367b83dcf7e5c57cecd3 https://www.encodeproject.org/files/ENCFF471SFT/@@download/ENCFF471SFT.bam released s3://encode-public/2021/02/02/4e24ef84-069f-4176-b0e3-918c539171f3/ENCFF471SFT.bam ENCODE4 v1.6.1 GRCh38 released ENCFF616EZV bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF950BVE/, /files/ENCFF110MCL/, /files/ENCFF354HQX/ 4376935655 ENCODE Processing Pipeline 21427857dda611453809a67dd2ac3e43 https://www.encodeproject.org/files/ENCFF616EZV/@@download/ENCFF616EZV.bam released s3://encode-public/2021/02/02/82d63ad0-2673-450a-a85b-aede10d08691/ENCFF616EZV.bam ENCODE4 v1.6.1 GRCh38 released ENCFF310SVT bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF005FTB/, /files/ENCFF110MCL/, /files/ENCFF364HZK/ 8230456206 ENCODE Processing Pipeline 6584586c6df006dc09eaa6116db3775a https://www.encodeproject.org/files/ENCFF310SVT/@@download/ENCFF310SVT.bam released s3://encode-public/2021/02/02/f907beff-40a4-460e-b805-48d38c68693a/ENCFF310SVT.bam ENCODE4 v1.6.1 GRCh38 released ENCFF205DBO bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF950BVE/, /files/ENCFF110MCL/, /files/ENCFF354HQX/ 3611949660 ENCODE Processing Pipeline e1e017a8e9a345282b6f144429217db6 https://www.encodeproject.org/files/ENCFF205DBO/@@download/ENCFF205DBO.bam released s3://encode-public/2021/02/02/6730af97-ae67-4258-940c-852421d53b53/ENCFF205DBO.bam ENCODE4 v1.6.1 GRCh38 released ENCFF820EUV bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF364HZK/ 5244379117 ENCODE Processing Pipeline d583b8415800c69eac35706cfac22672 https://www.encodeproject.org/files/ENCFF820EUV/@@download/ENCFF820EUV.bam released s3://encode-public/2021/02/03/6772b3ee-4268-4653-89d2-bbdb153df5bf/ENCFF820EUV.bam ENCODE4 v1.6.1 GRCh38 released ENCFF890NEE bam bam unfiltered alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF110MCL/, /files/ENCFF354HQX/ 2153714039 ENCODE Processing Pipeline 51f4a4d6dcb839cfc3b606d7b663bd70 https://www.encodeproject.org/files/ENCFF890NEE/@@download/ENCFF890NEE.bam released s3://encode-public/2021/02/03/3c327534-5b33-4ada-ac94-9b794d309826/ENCFF890NEE.bam ENCODE4 v1.6.1 GRCh38 released ENCFF404XTO bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF364HZK/ 4039446817 ENCODE Processing Pipeline e65a0c98f224f31c2734dccdbe357743 https://www.encodeproject.org/files/ENCFF404XTO/@@download/ENCFF404XTO.bam released s3://encode-public/2021/02/03/72a12ed6-7cd5-41ce-ab7a-e88fd650f417/ENCFF404XTO.bam ENCODE4 v1.6.1 GRCh38 released ENCFF557AMC bam bam alignments GRCh38 ENCSR773IYZ Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-05-03 ENCODE 200-600 2 2_2 76 /files/ENCFF110MCL/, /files/ENCFF354HQX/ 1750723224 ENCODE Processing Pipeline baaa42997cf6150cb308832feff105a9 https://www.encodeproject.org/files/ENCFF557AMC/@@download/ENCFF557AMC.bam released s3://encode-public/2021/02/03/da5ab3b2-f855-4498-b0dd-488de8ab48a8/ENCFF557AMC.bam ENCODE4 v1.6.1 GRCh38 released ENCFF683ZVA fastq fastq reads ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 423977 Michael Snyder, Stanford 30bed9d2616c4fcca215e737273f8f9d https://www.encodeproject.org/files/ENCFF683ZVA/@@download/ENCFF683ZVA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/5e13197e-2f72-4584-b5fe-4dd7647675ff/ENCFF683ZVA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF662CAD fastq fastq reads ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 184515766 Michael Snyder, Stanford 9002eeb95fd125fe426a397bf0608851 https://www.encodeproject.org/files/ENCFF662CAD/@@download/ENCFF662CAD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2935dd24-902c-4be8-8541-3d364f014a82/ENCFF662CAD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF291IUE fastq fastq reads ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 72764535 Michael Snyder, Stanford f152488d28be1ee1dcd607760a30468c https://www.encodeproject.org/files/ENCFF291IUE/@@download/ENCFF291IUE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/3b43308a-5963-4454-a2a6-737904a782b2/ENCFF291IUE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF129HNM bam bam alignments ce10 ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF683ZVA/, /files/ENCFF662CAD/, /files/ENCFF291IUE/, /files/ENCFF987UMF/ 339052811 Kevin White, UChicago c008e5557da23a98e545360116e59ff9 https://www.encodeproject.org/files/ENCFF129HNM/@@download/ENCFF129HNM.bam released s3://encode-public/2017/04/27/59f63e32-a586-4109-b551-ffa9cbb191eb/ENCFF129HNM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF599MZF bam bam alignments ce11 ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF683ZVA/, /files/ENCFF662CAD/, /files/ENCFF291IUE/, /files/ENCFF586MOL/ 339406219 Kevin White, UChicago 004957c4e35f913020604adc2f34f719 https://www.encodeproject.org/files/ENCFF599MZF/@@download/ENCFF599MZF.bam released s3://encode-public/2017/04/27/ccbabc7a-4772-4007-a1b7-3b9181cd4b5a/ENCFF599MZF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF710MIK bigWig bigWig signal of unique reads ce10 ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF129HNM/ 10036669 Kevin White, UChicago d6291e591d501364f280f302f0d3f3d9 https://www.encodeproject.org/files/ENCFF710MIK/@@download/ENCFF710MIK.bigWig released s3://encode-public/2017/04/29/97e15ae1-c520-4fad-896b-c926897cea63/ENCFF710MIK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF496HBP bigWig bigWig read-depth normalized signal ce10 ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF129HNM/ 9981207 Kevin White, UChicago 81beda2c7c5d82333d6612f4fd83adcb https://www.encodeproject.org/files/ENCFF496HBP/@@download/ENCFF496HBP.bigWig released s3://encode-public/2017/04/29/16c8b77f-46c3-4719-896f-e39e2b37b69a/ENCFF496HBP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF326VRX bigWig bigWig read-depth normalized signal ce11 ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF599MZF/ 9977673 Kevin White, UChicago f69cd4f524b5eb3456b2f142f9f16aa3 https://www.encodeproject.org/files/ENCFF326VRX/@@download/ENCFF326VRX.bigWig released s3://encode-public/2017/04/29/585d9e76-75b4-4ef1-b064-1317ca186950/ENCFF326VRX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF847YII bigWig bigWig signal of unique reads ce11 ENCSR510LKT Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF599MZF/ 10033377 Kevin White, UChicago 7f7c2778dcb170023c716f5bc4621928 https://www.encodeproject.org/files/ENCFF847YII/@@download/ENCFF847YII.bigWig released s3://encode-public/2017/04/29/9f7a5258-1064-4798-8f8a-a927358c1f99/ENCFF847YII.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF310PFX fastq fastq reads ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 single-ended 1564035745 Xiang-Dong Fu, UCSD fe811c17829850bc52ef9e3aead25f72 SRA:SRR14105437 https://www.encodeproject.org/files/ENCFF310PFX/@@download/ENCFF310PFX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/814f5b7b-0fac-4c39-9d90-cc2672f02ca2/ENCFF310PFX.fastq.gz low read length ENCFF282ICF fastq fastq reads ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 single-ended 1162276641 Xiang-Dong Fu, UCSD a7ffccccb5e0b0a6b6381f956239cd4e SRA:SRR14105438 https://www.encodeproject.org/files/ENCFF282ICF/@@download/ENCFF282ICF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/a1281d70-a832-4585-bfc0-47b4a9f4407b/ENCFF282ICF.fastq.gz low read length ENCFF021UBI bam bam alignments hg19 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF310PFX/ 1677733873 ENCODE Processing Pipeline 4d17782319112d7f66a2cc1b0f80a59f https://www.encodeproject.org/files/ENCFF021UBI/@@download/ENCFF021UBI.bam released s3://encode-public/2015/11/12/753650ab-0937-4d5f-aaf2-aac79c25d940/ENCFF021UBI.bam ENCODE3 hg19 archived low read length ENCFF363VZX bam bam alignments hg19 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF282ICF/, /files/ENCFF807MUK/ 1213826704 ENCODE Processing Pipeline e2e5faefc01177f3c345d1bc198104dc https://www.encodeproject.org/files/ENCFF363VZX/@@download/ENCFF363VZX.bam released s3://encode-public/2015/11/12/623a22c9-cea9-4125-a8a3-cb3c73e5310b/ENCFF363VZX.bam ENCODE3 hg19 archived low read length ENCFF100MPD bam bam unfiltered alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF282ICF/, /files/ENCFF643CGH/ 1609302782 ENCODE Processing Pipeline 1049e4c2311f6fb63bef4f9034409602 https://www.encodeproject.org/files/ENCFF100MPD/@@download/ENCFF100MPD.bam released s3://encode-public/2016/05/06/f6ce0808-83b8-42e9-9005-90cd52dd3942/ENCFF100MPD.bam ENCODE3 GRCh38 archived low read length ENCFF806VPE bam bam unfiltered alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF310PFX/ 2210382399 ENCODE Processing Pipeline 568891bfc2caa35bfe6b5798a6fab846 https://www.encodeproject.org/files/ENCFF806VPE/@@download/ENCFF806VPE.bam released s3://encode-public/2016/05/06/ac1e5bea-985a-4f50-9768-1564d772816d/ENCFF806VPE.bam ENCODE3 GRCh38 archived low read length ENCFF707WXP bam bam alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF282ICF/, /files/ENCFF643CGH/ 1212881011 ENCODE Processing Pipeline 135691ea718c3f46839e9bfaa59fa60c https://www.encodeproject.org/files/ENCFF707WXP/@@download/ENCFF707WXP.bam released s3://encode-public/2016/05/06/c79f805f-2179-45df-acb6-f984831b2788/ENCFF707WXP.bam ENCODE3 GRCh38 archived low read length ENCFF322OEH bam bam alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF310PFX/ 1676562096 ENCODE Processing Pipeline 5ea207ce5d8dae781599a9ed27363be4 https://www.encodeproject.org/files/ENCFF322OEH/@@download/ENCFF322OEH.bam released s3://encode-public/2016/05/06/c570dad1-2a02-455f-9510-7ca75adc60ce/ENCFF322OEH.bam ENCODE3 GRCh38 archived low read length ENCFF928IWM bam bam unfiltered alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF310PFX/ 2175595582 ENCODE Processing Pipeline b0f63dfdfd4c69373023fc6ce764e3f7 https://www.encodeproject.org/files/ENCFF928IWM/@@download/ENCFF928IWM.bam released s3://encode-public/2020/10/27/01d08ee6-652e-4d9e-a19e-c444f25e0b1b/ENCFF928IWM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF253OIL bam bam unfiltered alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF282ICF/ 1593968743 ENCODE Processing Pipeline 40a294097f3caadd0d198d69b2058289 https://www.encodeproject.org/files/ENCFF253OIL/@@download/ENCFF253OIL.bam released s3://encode-public/2020/10/27/2116a78c-53ce-46c3-b91a-80085005fbd2/ENCFF253OIL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF598EFH bam bam alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF310PFX/ 1700475986 ENCODE Processing Pipeline d09550b244b4a055b174067c191dbdfe https://www.encodeproject.org/files/ENCFF598EFH/@@download/ENCFF598EFH.bam released s3://encode-public/2020/10/27/3c5b0c0f-7fd9-4f21-ba5f-a499952d3d44/ENCFF598EFH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF809XWW bam bam alignments GRCh38 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF282ICF/ 1237022842 ENCODE Processing Pipeline d2e6aa84a1e14b41a7f8971b03c9661f https://www.encodeproject.org/files/ENCFF809XWW/@@download/ENCFF809XWW.bam released s3://encode-public/2020/10/27/924d83ed-774c-40bd-b6e2-904deb28aa4a/ENCFF809XWW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF662UCQ bam bam unfiltered alignments hg19 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF310PFX/ 2200922062 ENCODE Processing Pipeline 452ef3c840870ef0065a5084ffb803da https://www.encodeproject.org/files/ENCFF662UCQ/@@download/ENCFF662UCQ.bam released s3://encode-public/2018/01/12/91dd2f1c-8392-4cbe-86bb-846a6f6f5ee6/ENCFF662UCQ.bam ENCODE3 hg19 archived low read length ENCFF762RHM bam bam unfiltered alignments hg19 ENCSR141EZP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF282ICF/, /files/ENCFF807MUK/ 1602929066 ENCODE Processing Pipeline a128fffff29f388c9d84fd0d3e8d0049 https://www.encodeproject.org/files/ENCFF762RHM/@@download/ENCFF762RHM.bam released s3://encode-public/2018/01/12/fa52f64d-f89f-49d7-aef8-812fb475ac66/ENCFF762RHM.bam ENCODE3 hg19 archived low read length ENCFF898NGU bam bam unfiltered alignments hg19 ENCSR962APM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF400XMH/ 3500499120 ENCODE Processing Pipeline d6e5d51db197dafd3817e3fb8dfe70e7 https://www.encodeproject.org/files/ENCFF898NGU/@@download/ENCFF898NGU.bam released s3://encode-public/2018/02/21/48d109c4-f8ea-4b83-a3fa-2c2fff0781c7/ENCFF898NGU.bam ENCODE3 hg19 archived ENCFF400XMH fastq fastq reads ENCSR962APM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_2 50 single-ended 3315371895 Richard Myers, HAIB 184b107658d37d27c556adf0f95863ba SRA:SRR5339610 https://www.encodeproject.org/files/ENCFF400XMH/@@download/ENCFF400XMH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/6acf8984-eccf-4252-8729-b31b9abd257e/ENCFF400XMH.fastq.gz ENCFF227XXD bam bam alignments hg19 ENCSR962APM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF400XMH/ 2662515911 ENCODE Processing Pipeline 7e8ab6463182cf085f1c8ae54c620132 https://www.encodeproject.org/files/ENCFF227XXD/@@download/ENCFF227XXD.bam released s3://encode-public/2015/10/30/647d4510-ea60-490f-8ad0-8c2227ec9c71/ENCFF227XXD.bam ENCODE3 hg19 archived ENCFF912CYX bam bam unfiltered alignments GRCh38 ENCSR962APM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF400XMH/ 3511948495 ENCODE Processing Pipeline b5084494f3b104bb8e73d283b875828f https://www.encodeproject.org/files/ENCFF912CYX/@@download/ENCFF912CYX.bam released s3://encode-public/2016/05/06/8881c50f-ba91-4992-9d66-bef4792176fc/ENCFF912CYX.bam ENCODE3 GRCh38 archived ENCFF063BAN bam bam alignments GRCh38 ENCSR962APM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF400XMH/ 2662315381 ENCODE Processing Pipeline a957955226a0129f5c89a7e1d722efd6 https://www.encodeproject.org/files/ENCFF063BAN/@@download/ENCFF063BAN.bam released s3://encode-public/2016/05/06/c5edea45-a28e-447b-8873-8b3090941070/ENCFF063BAN.bam ENCODE3 GRCh38 archived ENCFF419RBJ bam bam unfiltered alignments GRCh38 ENCSR962APM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF400XMH/ 3473241122 ENCODE Processing Pipeline 6f8129c8717822dec8c090f81fb4567f https://www.encodeproject.org/files/ENCFF419RBJ/@@download/ENCFF419RBJ.bam released s3://encode-public/2020/11/05/3b74ea6a-d879-4932-a524-11f8873c1550/ENCFF419RBJ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF368CRJ bam bam alignments GRCh38 ENCSR962APM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF400XMH/ 2766737438 ENCODE Processing Pipeline a8887152c48deab5193dc01aa5b5b071 https://www.encodeproject.org/files/ENCFF368CRJ/@@download/ENCFF368CRJ.bam released s3://encode-public/2020/11/05/049de0c5-9362-407e-aee3-80214dedcf16/ENCFF368CRJ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF810QTB fastq fastq reads ENCSR835DTI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1596'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7621/'], '@type': ['Target', 'Item'], 'name': 'ZNF70-human', 'label': 'ZNF70', '@id': '/targets/ZNF70-human/', 'title': 'ZNF70 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a536ae08-cd90-4997-9d58-75104bccb8f6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF659CUV/ 2719505490 Michael Snyder, Stanford e998e4de2e61d4fe88d0db7b3a3311b0 https://www.encodeproject.org/files/ENCFF810QTB/@@download/ENCFF810QTB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/866ce17b-3450-4824-8b8d-e58a5152d12a/ENCFF810QTB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF659CUV fastq fastq reads ENCSR835DTI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1596'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7621/'], '@type': ['Target', 'Item'], 'name': 'ZNF70-human', 'label': 'ZNF70', '@id': '/targets/ZNF70-human/', 'title': 'ZNF70 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a536ae08-cd90-4997-9d58-75104bccb8f6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF810QTB/ 2431411822 Michael Snyder, Stanford 6cc5272ec437f484f7e40d22cfaf5718 https://www.encodeproject.org/files/ENCFF659CUV/@@download/ENCFF659CUV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/a8108074-77d4-4534-a565-7ed6c91821de/ENCFF659CUV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF077BHX bam bam unfiltered alignments GRCh38 ENCSR835DTI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1596'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7621/'], '@type': ['Target', 'Item'], 'name': 'ZNF70-human', 'label': 'ZNF70', '@id': '/targets/ZNF70-human/', 'title': 'ZNF70 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a536ae08-cd90-4997-9d58-75104bccb8f6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF659CUV/, /files/ENCFF810QTB/ 4445446490 ENCODE Processing Pipeline dc0855c18a50afbd9e72963876cf884a https://www.encodeproject.org/files/ENCFF077BHX/@@download/ENCFF077BHX.bam released s3://encode-public/2020/04/21/2c5444dd-e16d-466d-b980-f69fed9ac6e2/ENCFF077BHX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF395KLE bam bam alignments GRCh38 ENCSR835DTI Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1596'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7621/'], '@type': ['Target', 'Item'], 'name': 'ZNF70-human', 'label': 'ZNF70', '@id': '/targets/ZNF70-human/', 'title': 'ZNF70 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a536ae08-cd90-4997-9d58-75104bccb8f6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF659CUV/, /files/ENCFF810QTB/ 2881464820 ENCODE Processing Pipeline 67f93c1f7a3b7f5b87229748f90fc775 https://www.encodeproject.org/files/ENCFF395KLE/@@download/ENCFF395KLE.bam released s3://encode-public/2020/04/21/545e4593-7488-4261-96a0-893ddbfe52c3/ENCFF395KLE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF439BFI fastq fastq reads ENCSR908QFK Control ChIP-seq /worm-donors/ENCDO066HIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181714/'], '@type': ['Target', 'Item'], 'name': 'pat-9-celegans', 'label': 'pat-9', '@id': '/targets/pat-9-celegans/', 'title': 'pat-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '143a2dfa-e856-415e-828f-c2a17f66e5b2', 'status': 'released'} ce11 X 16539543 16539544 DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1802987612 Kevin White, UChicago ccc5a77d07cc267cbffda498e62826eb https://www.encodeproject.org/files/ENCFF439BFI/@@download/ENCFF439BFI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/df32fa99-c004-47e9-9589-1ac2191d2f2f/ENCFF439BFI.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF759TEZ bigWig bigWig read-depth normalized signal ce11 ENCSR908QFK Control ChIP-seq /worm-donors/ENCDO066HIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181714/'], '@type': ['Target', 'Item'], 'name': 'pat-9-celegans', 'label': 'pat-9', '@id': '/targets/pat-9-celegans/', 'title': 'pat-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '143a2dfa-e856-415e-828f-c2a17f66e5b2', 'status': 'released'} ce11 X 16539543 16539544 DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF817CSD/ 9972242 Kevin White, UChicago 9d30b9a586df88a5fb094e32a27d364f https://www.encodeproject.org/files/ENCFF759TEZ/@@download/ENCFF759TEZ.bigWig released s3://encode-public/2018/03/01/24663285-04e9-4494-8a77-923e5abb2763/ENCFF759TEZ.bigWig Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF367OHV bigWig bigWig signal of unique reads ce11 ENCSR908QFK Control ChIP-seq /worm-donors/ENCDO066HIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181714/'], '@type': ['Target', 'Item'], 'name': 'pat-9-celegans', 'label': 'pat-9', '@id': '/targets/pat-9-celegans/', 'title': 'pat-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '143a2dfa-e856-415e-828f-c2a17f66e5b2', 'status': 'released'} ce11 X 16539543 16539544 DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF817CSD/ 9945564 Kevin White, UChicago fdef0e4d243aa6c0a6e320110c00ecf6 https://www.encodeproject.org/files/ENCFF367OHV/@@download/ENCFF367OHV.bigWig released s3://encode-public/2018/03/01/c6ace884-3406-4563-ab51-a12e70f3ae08/ENCFF367OHV.bigWig Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF817CSD bam bam alignments ce11 ENCSR908QFK Control ChIP-seq /worm-donors/ENCDO066HIC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181714/'], '@type': ['Target', 'Item'], 'name': 'pat-9-celegans', 'label': 'pat-9', '@id': '/targets/pat-9-celegans/', 'title': 'pat-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '143a2dfa-e856-415e-828f-c2a17f66e5b2', 'status': 'released'} ce11 X 16539543 16539544 DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF439BFI/, /files/ENCFF586MOL/ 2381868529 Kevin White, UChicago 0f03a6f8a03c3e59c5510475097c95e3 https://www.encodeproject.org/files/ENCFF817CSD/@@download/ENCFF817CSD.bam released s3://encode-public/2018/02/28/e8b743fe-f1b4-4a0a-8193-1f9c7b584595/ENCFF817CSD.bam Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF047XCG fastq fastq reads ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 177817669 Michael Snyder, Stanford e91471a165db1a167d2a7b45065ccf5a https://www.encodeproject.org/files/ENCFF047XCG/@@download/ENCFF047XCG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fc7fb37f-8c1c-49c7-8883-a7668ae4c930/ENCFF047XCG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF979SLX fastq fastq reads ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 161975501 Michael Snyder, Stanford 58ce05080e76102b3ad80784ce44874c https://www.encodeproject.org/files/ENCFF979SLX/@@download/ENCFF979SLX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/26783a60-c040-4460-b601-1d24878c5f3d/ENCFF979SLX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF365UVX bam bam alignments ce10 ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF979SLX/, /files/ENCFF047XCG/, /files/ENCFF987UMF/ 367341542 Kevin White, UChicago 34b0ef7990e7ffa2cef7f8742992525b https://www.encodeproject.org/files/ENCFF365UVX/@@download/ENCFF365UVX.bam released s3://encode-public/2016/10/18/28ea6744-8344-4f96-90d0-4e4b89ef8e53/ENCFF365UVX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF496MVT bam bam alignments ce11 ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF979SLX/, /files/ENCFF047XCG/, /files/ENCFF586MOL/ 367660039 Kevin White, UChicago a83561976bf88653a06b40c15bbcee33 https://www.encodeproject.org/files/ENCFF496MVT/@@download/ENCFF496MVT.bam released s3://encode-public/2016/10/18/61e4c085-9d04-4ecd-be5d-128882e57460/ENCFF496MVT.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF288ZYQ bigWig bigWig signal of unique reads ce10 ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF365UVX/ 9963672 Kevin White, UChicago 7ec017b45e22bf1464ede17ecfc409fc https://www.encodeproject.org/files/ENCFF288ZYQ/@@download/ENCFF288ZYQ.bigWig released s3://encode-public/2016/10/20/a4fa963c-81e3-413f-8ecb-6b5f6c8892c0/ENCFF288ZYQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF213IGQ bigWig bigWig read-depth normalized signal ce10 ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF365UVX/ 9964859 Kevin White, UChicago 88038bc38f63f12494393fae0444d02f https://www.encodeproject.org/files/ENCFF213IGQ/@@download/ENCFF213IGQ.bigWig released s3://encode-public/2016/10/20/2de6ab18-09c3-4533-8b53-1e3f2172596d/ENCFF213IGQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF187XZG bigWig bigWig read-depth normalized signal ce11 ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF496MVT/ 9964003 Kevin White, UChicago 64018312ed74cbb0c6252392ec380e45 https://www.encodeproject.org/files/ENCFF187XZG/@@download/ENCFF187XZG.bigWig released s3://encode-public/2016/10/21/b5df5fc3-06ac-41b6-b9bf-1bfb77acfd33/ENCFF187XZG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF389EVW bigWig bigWig signal of unique reads ce11 ENCSR883CKA Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF496MVT/ 9957954 Kevin White, UChicago 83bb919adb7d0f743126baf02876a0d5 https://www.encodeproject.org/files/ENCFF389EVW/@@download/ENCFF389EVW.bigWig released s3://encode-public/2016/10/21/168aee97-330c-44a3-90e5-4c7a45ebb3e8/ENCFF389EVW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF000XGD bam bam alignments hg19 ENCSR000EVH Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 32 695586188 Peggy Farnham, USC 9fb03907274969d14a44752504b7cedb https://www.encodeproject.org/files/ENCFF000XGD/@@download/ENCFF000XGD.bam archived s3://encode-public/2010/12/06/00dd9c02-be4e-4e15-8bce-effd77d1c731/ENCFF000XGD.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000XGF bigWig bigWig signal hg19 ENCSR000EVH Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 432816156 Peggy Farnham, USC 1da28fc58592456d53c04428fd1d855e https://www.encodeproject.org/files/ENCFF000XGF/@@download/ENCFF000XGF.bigWig archived s3://encode-public/2010/12/06/a9ef728b-2b8c-4e2c-b7c2-401474486ba2/ENCFF000XGF.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000XGR fastq fastq reads ENCSR000EVH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 single-ended 1015766484 Peggy Farnham, USC 46ce0b8697586eac31eac37a941b355e https://www.encodeproject.org/files/ENCFF000XGR/@@download/ENCFF000XGR.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2010/12/06/0dee036e-3f8d-4d2a-b52b-28e086c4326a/ENCFF000XGR.fastq.gz low read depth insufficient read length ENCFF692XZV bam bam unfiltered alignments GRCh38 ENCSR000EVH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000XGR/, /files/ENCFF643CGH/ 1279510172 ENCODE Processing Pipeline 0985197332e3ed8d5e01bd11b18f5d26 https://www.encodeproject.org/files/ENCFF692XZV/@@download/ENCFF692XZV.bam released s3://encode-public/2016/10/26/8162a045-4599-47cf-b406-0c9c947aae64/ENCFF692XZV.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF040BSG bam bam alignments GRCh38 ENCSR000EVH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000XGR/, /files/ENCFF643CGH/ 885014005 ENCODE Processing Pipeline b36b6b5072791ed5b662fd7d1462159c https://www.encodeproject.org/files/ENCFF040BSG/@@download/ENCFF040BSG.bam released s3://encode-public/2016/10/26/663ed8a2-b215-44b1-9fad-8ee4d2653cbb/ENCFF040BSG.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF270KKA bam bam unfiltered alignments hg19 ENCSR000EVH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000XGR/, /files/ENCFF807MUK/ 1275009441 ENCODE Processing Pipeline c7afaff429222943cb1137a2115a7fce https://www.encodeproject.org/files/ENCFF270KKA/@@download/ENCFF270KKA.bam released s3://encode-public/2016/11/13/c6c302d9-efd1-40ab-8f46-562db7e25bb7/ENCFF270KKA.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF119FHJ bam bam alignments hg19 ENCSR000EVH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000XGR/, /files/ENCFF807MUK/ 885391013 ENCODE Processing Pipeline c8ceb77e9ddaf60aacb5dbd723a31dda https://www.encodeproject.org/files/ENCFF119FHJ/@@download/ENCFF119FHJ.bam released s3://encode-public/2016/11/13/b3d61b7d-2470-4726-b169-9eed47e7b661/ENCFF119FHJ.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF949UKH bam bam alignments GRCh38 ENCSR000EVH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000XGR/ 914827708 ENCODE Processing Pipeline b469a365be1e21957054b3da9d76a91c https://www.encodeproject.org/files/ENCFF949UKH/@@download/ENCFF949UKH.bam released s3://encode-public/2020/10/27/ea1007cf-dc73-4674-a1e0-828baf8babd2/ENCFF949UKH.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF857STJ bam bam unfiltered alignments GRCh38 ENCSR000EVH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000XGR/ 1244029657 ENCODE Processing Pipeline 38a110e0a97e05f8eaa9ab8ed6df6412 https://www.encodeproject.org/files/ENCFF857STJ/@@download/ENCFF857STJ.bam released s3://encode-public/2020/10/27/c5b60fff-2886-4e57-88e2-245536ed9855/ENCFF857STJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF288PTQ bam bam alignments ce11 ENCSR504SMY Control ChIP-seq /worm-donors/ENCDO869UEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184940/'], '@type': ['Target', 'Item'], 'name': 'bed-3-celegans', 'label': 'bed-3', '@id': '/targets/bed-3-celegans/', 'title': 'bed-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8706055d-9473-4f09-aa13-aef8b1e00272', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3, 4 1_1, 3_1, 4_1 50 /files/ENCFF863GQQ/, /files/ENCFF618HMU/, /files/ENCFF866WJS/, /files/ENCFF586MOL/ 4735406303 Kevin White, UChicago f1cf8d23b65c01fcd1649664471caff8 https://www.encodeproject.org/files/ENCFF288PTQ/@@download/ENCFF288PTQ.bam released s3://encode-public/2018/02/27/d1028dcc-acd8-4918-a136-eac3a6ae9bec/ENCFF288PTQ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF618HMU fastq fastq reads ENCSR504SMY Control ChIP-seq /worm-donors/ENCDO869UEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184940/'], '@type': ['Target', 'Item'], 'name': 'bed-3-celegans', 'label': 'bed-3', '@id': '/targets/bed-3-celegans/', 'title': 'bed-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8706055d-9473-4f09-aa13-aef8b1e00272', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 3 3_1 50 single-ended 1494177332 Kevin White, UChicago 2e04d626c250665047561e9fea95b563 https://www.encodeproject.org/files/ENCFF618HMU/@@download/ENCFF618HMU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/968c4a53-c47f-4f89-a2e3-9f428ec3dbfc/ENCFF618HMU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF866WJS fastq fastq reads ENCSR504SMY Control ChIP-seq /worm-donors/ENCDO869UEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184940/'], '@type': ['Target', 'Item'], 'name': 'bed-3-celegans', 'label': 'bed-3', '@id': '/targets/bed-3-celegans/', 'title': 'bed-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8706055d-9473-4f09-aa13-aef8b1e00272', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 4 4_1 50 single-ended 559010456 Kevin White, UChicago a3115e600ee906aae4781622a5bfc601 https://www.encodeproject.org/files/ENCFF866WJS/@@download/ENCFF866WJS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/74ac1291-8b9b-487d-8be4-44acdcf0d2b3/ENCFF866WJS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF863GQQ fastq fastq reads ENCSR504SMY Control ChIP-seq /worm-donors/ENCDO869UEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184940/'], '@type': ['Target', 'Item'], 'name': 'bed-3-celegans', 'label': 'bed-3', '@id': '/targets/bed-3-celegans/', 'title': 'bed-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8706055d-9473-4f09-aa13-aef8b1e00272', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1523991856 Kevin White, UChicago 3e0caf57ba1f09d7bda5ab678a80bc8a https://www.encodeproject.org/files/ENCFF863GQQ/@@download/ENCFF863GQQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/9d3001ae-5e91-4d68-920b-5caf13ccd8d5/ENCFF863GQQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF269MIH bigWig bigWig read-depth normalized signal ce11 ENCSR504SMY Control ChIP-seq /worm-donors/ENCDO869UEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184940/'], '@type': ['Target', 'Item'], 'name': 'bed-3-celegans', 'label': 'bed-3', '@id': '/targets/bed-3-celegans/', 'title': 'bed-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8706055d-9473-4f09-aa13-aef8b1e00272', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3, 4 1_1, 3_1, 4_1 /files/ENCFF288PTQ/ 9981175 Kevin White, UChicago 4d0fd46faa2e3935b46a1ae9bc218208 https://www.encodeproject.org/files/ENCFF269MIH/@@download/ENCFF269MIH.bigWig released s3://encode-public/2018/03/01/dc4ae18a-3534-4859-b56d-7535331e4b98/ENCFF269MIH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF879AIW bigWig bigWig signal of unique reads ce11 ENCSR504SMY Control ChIP-seq /worm-donors/ENCDO869UEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184940/'], '@type': ['Target', 'Item'], 'name': 'bed-3-celegans', 'label': 'bed-3', '@id': '/targets/bed-3-celegans/', 'title': 'bed-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '8706055d-9473-4f09-aa13-aef8b1e00272', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1, 3, 4 1_1, 3_1, 4_1 /files/ENCFF288PTQ/ 10039449 Kevin White, UChicago e199026427c1bb535a1d360bb5375fa4 https://www.encodeproject.org/files/ENCFF879AIW/@@download/ENCFF879AIW.bigWig released s3://encode-public/2018/03/01/4f7e0431-9029-473d-9b0e-0731a3d0abdf/ENCFF879AIW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF289XBX fastq fastq reads ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1024726438 Xiang-Dong Fu, UCSD 585c85b874440fba95a0f9a51f71879d SRA:SRR14107054 https://www.encodeproject.org/files/ENCFF289XBX/@@download/ENCFF289XBX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/492d1a5c-6ed1-4fa4-ac21-b4766754f81c/ENCFF289XBX.fastq.gz low read length ENCFF593HBL fastq fastq reads ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 1071439319 Xiang-Dong Fu, UCSD 671f44a92ece78d3d516bfcd2473e2e1 SRA:SRR14107055 https://www.encodeproject.org/files/ENCFF593HBL/@@download/ENCFF593HBL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/dd54ea21-147f-4380-bbd7-896943cdeb99/ENCFF593HBL.fastq.gz low read length ENCFF287BIH bam bam alignments hg19 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF289XBX/ 1092247027 ENCODE Processing Pipeline f381bac12f574b4ccfa2e1a0f593fc3f https://www.encodeproject.org/files/ENCFF287BIH/@@download/ENCFF287BIH.bam released s3://encode-public/2015/11/12/c0a85f6a-3607-4eb7-bccd-aeed88b88153/ENCFF287BIH.bam ENCODE3 hg19 archived low read length ENCFF758YUI bam bam alignments hg19 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF593HBL/, /files/ENCFF807MUK/ 1151708268 ENCODE Processing Pipeline 62c83d5b22196d2f831085e6657162cb https://www.encodeproject.org/files/ENCFF758YUI/@@download/ENCFF758YUI.bam released s3://encode-public/2015/11/12/727e15dc-dcdb-48b6-abc4-fd76795ec151/ENCFF758YUI.bam ENCODE3 hg19 archived low read length ENCFF272IKY bam bam unfiltered alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF289XBX/ 1461545520 ENCODE Processing Pipeline 4c38cff70221ce724ef1a8d4689bd27e https://www.encodeproject.org/files/ENCFF272IKY/@@download/ENCFF272IKY.bam released s3://encode-public/2016/05/06/e0a4d286-779a-4220-8a2a-2e69907f333b/ENCFF272IKY.bam ENCODE3 GRCh38 archived low read length ENCFF550DOI bam bam alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF289XBX/ 1091317003 ENCODE Processing Pipeline f86a67255c5f204c42a39f2be105d326 https://www.encodeproject.org/files/ENCFF550DOI/@@download/ENCFF550DOI.bam released s3://encode-public/2016/05/06/254c8211-7dd0-4ff5-9f7c-70230758948c/ENCFF550DOI.bam ENCODE3 GRCh38 archived low read length ENCFF173SFW bam bam unfiltered alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF593HBL/, /files/ENCFF643CGH/ 1557212795 ENCODE Processing Pipeline fe11d8d663f81ddd3ed2caca838e7012 https://www.encodeproject.org/files/ENCFF173SFW/@@download/ENCFF173SFW.bam released s3://encode-public/2016/05/06/336fc795-9e4a-42b7-a730-a5287cf5be20/ENCFF173SFW.bam ENCODE3 GRCh38 archived low read length ENCFF951CQL bam bam alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF593HBL/, /files/ENCFF643CGH/ 1150653369 ENCODE Processing Pipeline 0388a7c03bd4d61333361fe8d2d3386d https://www.encodeproject.org/files/ENCFF951CQL/@@download/ENCFF951CQL.bam released s3://encode-public/2016/05/06/bd5b555c-7512-4587-99ba-aaed3cfb75a3/ENCFF951CQL.bam ENCODE3 GRCh38 archived low read length ENCFF327BCH bam bam alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF289XBX/ 1125113806 ENCODE Processing Pipeline b904f64a2895d764aa8bdcd086437459 https://www.encodeproject.org/files/ENCFF327BCH/@@download/ENCFF327BCH.bam released s3://encode-public/2020/10/27/bd60379c-7c67-4bb3-8353-12282760ab90/ENCFF327BCH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF187JAE bam bam unfiltered alignments hg19 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF593HBL/, /files/ENCFF807MUK/ 1552631231 ENCODE Processing Pipeline ad45086c2cef0e25075997e02eb16cd0 https://www.encodeproject.org/files/ENCFF187JAE/@@download/ENCFF187JAE.bam released s3://encode-public/2018/01/12/1801d9c5-a738-4502-b53b-2a15d76859f8/ENCFF187JAE.bam ENCODE3 hg19 archived low read length ENCFF111YKS bam bam unfiltered alignments hg19 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF289XBX/ 1456158530 ENCODE Processing Pipeline e7ae07a7032dd08a13c39a4bba3a291f https://www.encodeproject.org/files/ENCFF111YKS/@@download/ENCFF111YKS.bam released s3://encode-public/2018/01/12/1125788d-89f6-448c-ad23-6ef25faea1b9/ENCFF111YKS.bam ENCODE3 hg19 archived low read length ENCFF487XJU bam bam alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF593HBL/ 1209150839 ENCODE Processing Pipeline 19b98ee872b2636523d69ec38b0b3078 https://www.encodeproject.org/files/ENCFF487XJU/@@download/ENCFF487XJU.bam released s3://encode-public/2020/10/27/c0fce08a-ddcc-4652-9da1-f9bdda30bc64/ENCFF487XJU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF007WEC bam bam unfiltered alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF593HBL/ 1529495130 ENCODE Processing Pipeline 54f2f6eaebc8be49f87fb2768339fb56 https://www.encodeproject.org/files/ENCFF007WEC/@@download/ENCFF007WEC.bam released s3://encode-public/2020/10/27/e9f8b2b8-02d7-45dd-8b2d-82831b108a87/ENCFF007WEC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF225UIW bam bam unfiltered alignments GRCh38 ENCSR561BTA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF289XBX/ 1445710364 ENCODE Processing Pipeline 75f9638eb323e62454ff1d198439274c https://www.encodeproject.org/files/ENCFF225UIW/@@download/ENCFF225UIW.bam released s3://encode-public/2020/10/27/87c0ca9f-59e4-4291-bed0-e78e4288849a/ENCFF225UIW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF242UEF bam bam alignments ce11 ENCSR195UEL Control ChIP-seq /worm-donors/ENCDO520YBA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178280/'], '@type': ['Target', 'Item'], 'name': 'lin-54-celegans', 'label': 'lin-54', '@id': '/targets/lin-54-celegans/', 'title': 'lin-54 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '700ea522-9dba-4394-8004-e589416148ad', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF590UFJ/, /files/ENCFF586MOL/ 1208424241 Kevin White, UChicago 0f55597f837f21718d7d39601d49369e https://www.encodeproject.org/files/ENCFF242UEF/@@download/ENCFF242UEF.bam released s3://encode-public/2018/02/28/47ace643-a6bf-4f1d-874e-a8bc6417ecbb/ENCFF242UEF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF590UFJ fastq fastq reads ENCSR195UEL Control ChIP-seq /worm-donors/ENCDO520YBA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178280/'], '@type': ['Target', 'Item'], 'name': 'lin-54-celegans', 'label': 'lin-54', '@id': '/targets/lin-54-celegans/', 'title': 'lin-54 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '700ea522-9dba-4394-8004-e589416148ad', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 916713148 Kevin White, UChicago 191c94c2cc3884a9bf846d15911b4e6d https://www.encodeproject.org/files/ENCFF590UFJ/@@download/ENCFF590UFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/d1d64076-0b05-4179-aa3a-8d9a5f16fbbb/ENCFF590UFJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF492EHV bigWig bigWig signal of unique reads ce11 ENCSR195UEL Control ChIP-seq /worm-donors/ENCDO520YBA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178280/'], '@type': ['Target', 'Item'], 'name': 'lin-54-celegans', 'label': 'lin-54', '@id': '/targets/lin-54-celegans/', 'title': 'lin-54 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '700ea522-9dba-4394-8004-e589416148ad', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF242UEF/ 10019787 Kevin White, UChicago c66d02c8204bf90fb24bf5ab798c3b42 https://www.encodeproject.org/files/ENCFF492EHV/@@download/ENCFF492EHV.bigWig released s3://encode-public/2018/03/01/49456b54-4131-4ef7-8157-75411691a2d7/ENCFF492EHV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF780HEE bigWig bigWig read-depth normalized signal ce11 ENCSR195UEL Control ChIP-seq /worm-donors/ENCDO520YBA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178280/'], '@type': ['Target', 'Item'], 'name': 'lin-54-celegans', 'label': 'lin-54', '@id': '/targets/lin-54-celegans/', 'title': 'lin-54 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '700ea522-9dba-4394-8004-e589416148ad', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF242UEF/ 9957316 Kevin White, UChicago 69b400380c63bbebe73e86dedb8f9abc https://www.encodeproject.org/files/ENCFF780HEE/@@download/ENCFF780HEE.bigWig released s3://encode-public/2018/03/01/f17ca936-7d6f-4eff-9b14-c4f367b3eea3/ENCFF780HEE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF150DJK fastq fastq reads ENCSR270KSY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 single-ended 2062948320 Richard Myers, HAIB 7e76eda2f9f7939281998c1b026708da SRA:SRR14831489 https://www.encodeproject.org/files/ENCFF150DJK/@@download/ENCFF150DJK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/05/a184da26-3fd3-47ed-86cd-f854fde8fb21/ENCFF150DJK.fastq.gz ENCFF373LTM bam bam unfiltered alignments mm10 ENCSR270KSY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF150DJK/, /files/ENCFF018NEO/ 2189566680 ENCODE Processing Pipeline d591f3eda08baad06889936024fb352a https://www.encodeproject.org/files/ENCFF373LTM/@@download/ENCFF373LTM.bam released s3://encode-public/2016/05/20/8b9eba65-0f32-452a-a09d-0857de3faacb/ENCFF373LTM.bam ENCODE3 mm10 archived ENCFF212NWB bam bam alignments mm10 ENCSR270KSY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF150DJK/, /files/ENCFF018NEO/ 1582138256 ENCODE Processing Pipeline 312a09db5cc8f0cf96101b4aa9dc525e https://www.encodeproject.org/files/ENCFF212NWB/@@download/ENCFF212NWB.bam released s3://encode-public/2016/05/20/eb6f21f3-0272-4f11-9781-2c6632f43f67/ENCFF212NWB.bam ENCODE3 mm10 archived ENCFF036LPP bam bam unfiltered alignments mm10 ENCSR270KSY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF150DJK/, /files/ENCFF309GLL/ 2170022694 ENCODE Processing Pipeline 66ce70896170c67a99a133670bf8958a https://www.encodeproject.org/files/ENCFF036LPP/@@download/ENCFF036LPP.bam released s3://encode-public/2020/11/06/941025de-6847-4f85-88c5-a21d363138aa/ENCFF036LPP.bam ENCODE4 v1.6.1 mm10 released ENCFF968DZO bam bam alignments mm10 ENCSR270KSY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF150DJK/, /files/ENCFF309GLL/ 1638055117 ENCODE Processing Pipeline c1819ea2afeb645c0e97da82cd001de1 https://www.encodeproject.org/files/ENCFF968DZO/@@download/ENCFF968DZO.bam released s3://encode-public/2020/11/06/b5ce89a5-cb92-4c2a-a139-466b427b2cc8/ENCFF968DZO.bam ENCODE4 v1.6.1 mm10 released ENCFF001HWX bam bam alignments hg19 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HXF/ 716098187 John Stamatoyannopoulos, UW 727bf1fb6715522036f5faf38b7824c1 https://www.encodeproject.org/files/ENCFF001HWX/@@download/ENCFF001HWX.bam archived s3://encode-public/2011/06/25/0f5a9449-7faa-42b6-90f5-83fd405b253b/ENCFF001HWX.bam Lab custom hg19 archived low read depth, low read length ENCFF001HWZ bigWig bigWig raw signal hg19 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HWX/ 161317391 John Stamatoyannopoulos, UW a23075ff30c2b468c38faacc258d1f81 https://www.encodeproject.org/files/ENCFF001HWZ/@@download/ENCFF001HWZ.bigWig archived s3://encode-public/2011/06/25/10f2dcde-af2e-46d3-a91f-ed39175ad021/ENCFF001HWZ.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HXF fastq fastq reads ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 766729294 John Stamatoyannopoulos, UW 3ce39457bba2339e0ae47c3e8382fd76 https://www.encodeproject.org/files/ENCFF001HXF/@@download/ENCFF001HXF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/a2d5d811-76a8-47fc-93c9-7e4aa52af0f0/ENCFF001HXF.fastq.gz low read depth, low read length ENCFF948UIP bam bam unfiltered alignments GRCh38 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HXF/, /files/ENCFF643CGH/ 939878469 ENCODE Processing Pipeline 9c11addcac38f19f2368d10b331b2bed https://www.encodeproject.org/files/ENCFF948UIP/@@download/ENCFF948UIP.bam released s3://encode-public/2016/08/09/6ec59945-98ab-4d0c-9d18-c5738267a0c8/ENCFF948UIP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF682GMA bam bam alignments GRCh38 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HXF/, /files/ENCFF643CGH/ 651125098 ENCODE Processing Pipeline 5a59cbc7200f73eec97acedc169f2ffe https://www.encodeproject.org/files/ENCFF682GMA/@@download/ENCFF682GMA.bam released s3://encode-public/2016/08/09/e564208f-a588-43c6-bc50-da8970c05ff8/ENCFF682GMA.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF512ZCH bam bam unfiltered alignments hg19 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HXF/, /files/ENCFF807MUK/ 935357795 ENCODE Processing Pipeline c8b456bf66aebcbcb04aceee03d2938b https://www.encodeproject.org/files/ENCFF512ZCH/@@download/ENCFF512ZCH.bam released s3://encode-public/2016/11/13/f5271721-3b7a-4f9c-a575-12d1b1e70f62/ENCFF512ZCH.bam ENCODE3 hg19 archived low read depth, low read length ENCFF727MWW bam bam alignments hg19 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HXF/, /files/ENCFF807MUK/ 651294403 ENCODE Processing Pipeline 4dd9414c58330f385233381a812aa8b3 https://www.encodeproject.org/files/ENCFF727MWW/@@download/ENCFF727MWW.bam released s3://encode-public/2016/11/13/46166226-fdca-4663-a129-652b9edb33b5/ENCFF727MWW.bam ENCODE3 hg19 archived low read depth, low read length ENCFF835LWN bam bam unfiltered alignments GRCh38 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HXF/ 919089334 ENCODE Processing Pipeline 92a50344ceecd4a9e58a085ad2100f7c https://www.encodeproject.org/files/ENCFF835LWN/@@download/ENCFF835LWN.bam released s3://encode-public/2020/08/06/53aca335-7e70-4481-819c-95e0f6466517/ENCFF835LWN.bam ENCODE4 GRCh38 released low read depth, low read length ENCFF013YEX bam bam alignments GRCh38 ENCSR000DXG Control ChIP-seq /human-donors/ENCDO106AAA/ CL:0002328 bronchial epithelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HXF/ 715425740 ENCODE Processing Pipeline 1cc3a21f17ab48b325e85ee36ab0cf9c https://www.encodeproject.org/files/ENCFF013YEX/@@download/ENCFF013YEX.bam released s3://encode-public/2020/08/06/8db535bc-a64a-4351-8c3e-ee1dd4e95930/ENCFF013YEX.bam ENCODE4 GRCh38 released low read depth, low read length ENCFF056DMB fastq fastq reads ENCSR581MER Control ChIP-seq /worm-donors/ENCDO722ZNZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 217638611 Michael Snyder, Stanford f6147bd2df9878852598a83c17b54bdb https://www.encodeproject.org/files/ENCFF056DMB/@@download/ENCFF056DMB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6f2ac462-da6d-4954-9c0e-1699b4732d60/ENCFF056DMB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF772GXT fastq fastq reads ENCSR581MER Control ChIP-seq /worm-donors/ENCDO722ZNZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 130001308 Michael Snyder, Stanford e9a20631cb30834f39e50954c5b45338 https://www.encodeproject.org/files/ENCFF772GXT/@@download/ENCFF772GXT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c482febc-39df-4ba8-8bb1-1a97c2b54dd0/ENCFF772GXT.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF604FWF fastq fastq reads ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 151141588 Michael Snyder, Stanford 156e4ef45de8f66c3d2a1cc12f5374b7 https://www.encodeproject.org/files/ENCFF604FWF/@@download/ENCFF604FWF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0c1a0313-b689-4c04-a383-fc0121074a8e/ENCFF604FWF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF476EUE fastq fastq reads ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 159598384 Michael Snyder, Stanford 96fd8d51af627bd8abe221051481f597 https://www.encodeproject.org/files/ENCFF476EUE/@@download/ENCFF476EUE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/33dd9ebc-4d03-48bb-baf8-82163cf034a1/ENCFF476EUE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF775SPQ bam bam alignments ce10 ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF604FWF/, /files/ENCFF476EUE/, /files/ENCFF987UMF/ 369212141 Kevin White, UChicago e5d9aadee32f800b7e2a8c4907210de1 https://www.encodeproject.org/files/ENCFF775SPQ/@@download/ENCFF775SPQ.bam released s3://encode-public/2016/10/18/6387b580-dd1d-4025-b5df-b51eb4b63d46/ENCFF775SPQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF003GMD bam bam alignments ce11 ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF604FWF/, /files/ENCFF476EUE/, /files/ENCFF586MOL/ 369535168 Kevin White, UChicago a8be677357b02c4b401079f1848e01e3 https://www.encodeproject.org/files/ENCFF003GMD/@@download/ENCFF003GMD.bam released s3://encode-public/2016/10/18/7770ba90-3462-444d-894e-62b353f2d225/ENCFF003GMD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF702ZEP bigWig bigWig read-depth normalized signal ce10 ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF775SPQ/ 10041759 Kevin White, UChicago 2df2112e9ee395019f152e5b062aff97 https://www.encodeproject.org/files/ENCFF702ZEP/@@download/ENCFF702ZEP.bigWig released s3://encode-public/2016/10/20/a0fe2779-b285-42be-8f33-91a905a2cab5/ENCFF702ZEP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF426IYF bigWig bigWig signal of unique reads ce10 ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF775SPQ/ 10030860 Kevin White, UChicago de475c70c5bd2f8ec2e1473e55b73996 https://www.encodeproject.org/files/ENCFF426IYF/@@download/ENCFF426IYF.bigWig released s3://encode-public/2016/10/20/c9f0c703-9577-49da-a9c7-29cfde313d48/ENCFF426IYF.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF879BAU bigWig bigWig read-depth normalized signal ce11 ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF003GMD/ 10040671 Kevin White, UChicago 4bc33de724987d6893d3b3e46c083342 https://www.encodeproject.org/files/ENCFF879BAU/@@download/ENCFF879BAU.bigWig released s3://encode-public/2016/10/20/37939a06-bf47-4eaf-9655-31fb015afbe0/ENCFF879BAU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF367ETC bigWig bigWig signal of unique reads ce11 ENCSR650IGG Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF003GMD/ 10026692 Kevin White, UChicago 652538a397be359adc043829a62b315b https://www.encodeproject.org/files/ENCFF367ETC/@@download/ENCFF367ETC.bigWig released s3://encode-public/2016/10/20/1d82d1d9-9d83-4a0f-9a35-d07f4edbb237/ENCFF367ETC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF487BBH fastq fastq reads ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 149621220 Michael Snyder, Stanford 70bc95f26cda2e1c5355da3aca47ea26 https://www.encodeproject.org/files/ENCFF487BBH/@@download/ENCFF487BBH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f0a2793c-29f2-4d08-b894-baf92cf93e57/ENCFF487BBH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF251FJA fastq fastq reads ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 198809190 Michael Snyder, Stanford f32e96ba49aab97824fd43efbac3137d https://www.encodeproject.org/files/ENCFF251FJA/@@download/ENCFF251FJA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2f7054f4-d22f-4026-8217-abc376fda1e5/ENCFF251FJA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF651RTW bam bam alignments ce10 ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF487BBH/, /files/ENCFF251FJA/, /files/ENCFF987UMF/ 440988825 Kevin White, UChicago 23ae2c1d96cd87ef19cedcd88ee4b73a https://www.encodeproject.org/files/ENCFF651RTW/@@download/ENCFF651RTW.bam released s3://encode-public/2016/10/18/e767d48b-b61d-4202-ac96-d7fa8c8452e9/ENCFF651RTW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF425SZS bam bam alignments ce11 ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF487BBH/, /files/ENCFF251FJA/, /files/ENCFF586MOL/ 441411508 Kevin White, UChicago 405ee6781d47f7e9ac98861efc6dafdd https://www.encodeproject.org/files/ENCFF425SZS/@@download/ENCFF425SZS.bam released s3://encode-public/2016/10/18/7d8ee07a-1290-471d-9eca-c5ad5d57a030/ENCFF425SZS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF270WAW bigWig bigWig read-depth normalized signal ce10 ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF651RTW/ 9978158 Kevin White, UChicago 436da9027a0aa55768fe8e5496f3c781 https://www.encodeproject.org/files/ENCFF270WAW/@@download/ENCFF270WAW.bigWig released s3://encode-public/2016/10/20/72070963-fca1-493b-88ab-e568727d707a/ENCFF270WAW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF627GWX bigWig bigWig signal of unique reads ce10 ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF651RTW/ 10036619 Kevin White, UChicago ff438730e1e1644cc446126a843d5a50 https://www.encodeproject.org/files/ENCFF627GWX/@@download/ENCFF627GWX.bigWig released s3://encode-public/2016/10/20/c3106be8-a6d1-4989-9a32-dc5cc98c53ab/ENCFF627GWX.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF058YIS bigWig bigWig signal of unique reads ce11 ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF425SZS/ 10035378 Kevin White, UChicago f824912bfa1ccaae6f48a0cc60c90ae9 https://www.encodeproject.org/files/ENCFF058YIS/@@download/ENCFF058YIS.bigWig released s3://encode-public/2016/10/21/ad939c1d-cef9-4393-a6bf-f1dfa7b86f37/ENCFF058YIS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF733PCW bigWig bigWig read-depth normalized signal ce11 ENCSR724QCI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF425SZS/ 9975775 Kevin White, UChicago 940f0b286399d7d79f9587aee662adf7 https://www.encodeproject.org/files/ENCFF733PCW/@@download/ENCFF733PCW.bigWig released s3://encode-public/2016/10/21/43719401-a539-4366-ac1d-8d57b8382843/ENCFF733PCW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF640FUN fastq fastq reads ENCSR646FGM Control ChIP-seq /human-donors/ENCDO077CCP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 330274674 Bradley Bernstein, Broad 056d55d716d9c92f2dc7bb62e2d6eeea SRA:SRR16813176 https://www.encodeproject.org/files/ENCFF640FUN/@@download/ENCFF640FUN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/dcd623d3-814f-43ce-a10a-fd09f18f7721/ENCFF640FUN.fastq.gz ENCFF112ANY fastq fastq reads ENCSR646FGM Control ChIP-seq /human-donors/ENCDO077CCP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 332313772 Bradley Bernstein, Broad c6dbd685f0a061217945e61269325963 SRA:SRR16813177 https://www.encodeproject.org/files/ENCFF112ANY/@@download/ENCFF112ANY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/adf3759d-c9ac-44e2-8462-9efb3f82837a/ENCFF112ANY.fastq.gz ENCFF488ANK fastq fastq reads ENCSR646FGM Control ChIP-seq /human-donors/ENCDO077CCP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 335127291 Bradley Bernstein, Broad 1e6cef8b713b2418cde16a3a026f3b87 SRA:SRR16813178 https://www.encodeproject.org/files/ENCFF488ANK/@@download/ENCFF488ANK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/4123c48e-32dd-44c9-93ae-930a29831465/ENCFF488ANK.fastq.gz ENCFF097ESU fastq fastq reads ENCSR646FGM Control ChIP-seq /human-donors/ENCDO077CCP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 333094368 Bradley Bernstein, Broad dc8b2b475f0e7d198b6ce91943a34296 SRA:SRR16813179 https://www.encodeproject.org/files/ENCFF097ESU/@@download/ENCFF097ESU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/32605725-2410-4691-8381-87d213140ff5/ENCFF097ESU.fastq.gz ENCFF313JSZ fastq fastq reads ENCSR646FGM Control ChIP-seq /human-donors/ENCDO077CCP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 380500971 Bradley Bernstein, Broad fa401ff0033d97cd9615de44e7be668c SRA:SRR16813172 https://www.encodeproject.org/files/ENCFF313JSZ/@@download/ENCFF313JSZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/de984aa1-c005-46b1-8924-f03ba7ed7aa3/ENCFF313JSZ.fastq.gz ENCFF528SCV fastq fastq reads ENCSR646FGM Control ChIP-seq /human-donors/ENCDO077CCP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 375675149 Bradley Bernstein, Broad 33c2233c664e08313e2f91ce58716ff4 SRA:SRR16813173 https://www.encodeproject.org/files/ENCFF528SCV/@@download/ENCFF528SCV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/60c5d7c4-1d8f-42aa-8e99-1263bf98af35/ENCFF528SCV.fastq.gz ENCFF494HXX fastq fastq reads ENCSR646FGM Control ChIP-seq /human-donors/ENCDO077CCP/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 380189858 Bradley Bernstein, Broad 0f493ea80e998994c8d7fae371b3f7de 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ENCODE4 v1.8.0 GRCh38 released ENCFF598ZSN fastq fastq reads ENCSR866EST Control ChIP-seq /worm-donors/ENCDO925WGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178788/'], '@type': ['Target', 'Item'], 'name': 'lin-40-celegans', 'label': 'lin-40', '@id': '/targets/lin-40-celegans/', 'title': 'lin-40 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '42e1de46-ef24-46c2-a0f2-e12baf391df8', 'status': 'released'} ce11 V 3701391 3713226 DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 982393244 Kevin White, UChicago 8ed03d9a1690d79321da20ddd8d4c2d4 https://www.encodeproject.org/files/ENCFF598ZSN/@@download/ENCFF598ZSN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/b55884e5-09ad-48da-9fb0-135d5c77eebd/ENCFF598ZSN.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF278HTP bam bam alignments ce10 ENCSR866EST Control ChIP-seq /worm-donors/ENCDO925WGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178788/'], '@type': ['Target', 'Item'], 'name': 'lin-40-celegans', 'label': 'lin-40', '@id': '/targets/lin-40-celegans/', 'title': 'lin-40 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reagents ENCFF303SWE bigWig bigWig signal of unique reads ce10 ENCSR866EST Control ChIP-seq /worm-donors/ENCDO925WGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178788/'], '@type': ['Target', 'Item'], 'name': 'lin-40-celegans', 'label': 'lin-40', '@id': '/targets/lin-40-celegans/', 'title': 'lin-40 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '42e1de46-ef24-46c2-a0f2-e12baf391df8', 'status': 'released'} ce11 V 3701391 3713226 DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF278HTP/ 10060630 Kevin White, UChicago b319f284b05cd99737e2a865a97b5461 https://www.encodeproject.org/files/ENCFF303SWE/@@download/ENCFF303SWE.bigWig released s3://encode-public/2015/10/02/609b5aa1-71c8-4504-a665-550a084c9129/ENCFF303SWE.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF297CHA bam bam alignments ce11 ENCSR866EST Control ChIP-seq /worm-donors/ENCDO925WGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178788/'], '@type': ['Target', 'Item'], 'name': 'lin-40-celegans', 'label': 'lin-40', '@id': '/targets/lin-40-celegans/', 'title': 'lin-40 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reagents ENCFF694VHF bigWig bigWig read-depth normalized signal ce11 ENCSR866EST Control ChIP-seq /worm-donors/ENCDO925WGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178788/'], '@type': ['Target', 'Item'], 'name': 'lin-40-celegans', 'label': 'lin-40', '@id': '/targets/lin-40-celegans/', 'title': 'lin-40 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '42e1de46-ef24-46c2-a0f2-e12baf391df8', 'status': 'released'} ce11 V 3701391 3713226 DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF297CHA/ 9984674 Kevin White, UChicago fc52a53a7b86580f6355fe88cc9caf15 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ENCODE see document 2 2_1 36 /files/ENCFF000RCB/ 1379283991 Richard Myers, HAIB 5a65843b4353678a0fb50f917aeaf66b https://www.encodeproject.org/files/ENCFF000RBU/@@download/ENCFF000RBU.bam archived s3://encode-public/2012/01/23/f45e1ccc-87b9-4580-9b12-3f249985f6c9/ENCFF000RBU.bam Lab custom hg19 archived low read length ENCFF000RBW bam bam alignments hg19 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF000RCF/ 1291517628 Richard Myers, HAIB aa2f91256457d218ce89913455740183 https://www.encodeproject.org/files/ENCFF000RBW/@@download/ENCFF000RBW.bam archived s3://encode-public/2012/01/23/2102a4ee-05a5-4006-9d7b-0adf36f69194/ENCFF000RBW.bam Lab custom hg19 archived low read length ENCFF000RBX bigWig bigWig raw signal hg19 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 7029792 Richard Myers, 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Pipeline 02fecc78dc99906f6e17d2b8a2424736 https://www.encodeproject.org/files/ENCFF688QSW/@@download/ENCFF688QSW.bam released s3://encode-public/2016/11/13/487cfab7-48d5-4913-a5e7-64c8e4b31cd1/ENCFF688QSW.bam ENCODE3 hg19 archived low read length ENCFF029WMI bam bam unfiltered alignments hg19 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000RCB/, /files/ENCFF807MUK/ 1451758756 ENCODE Processing Pipeline bbd0849e0020a95aef430f2d830fe696 https://www.encodeproject.org/files/ENCFF029WMI/@@download/ENCFF029WMI.bam released s3://encode-public/2016/11/13/7cccd6bc-bacf-4c1b-aa1a-aef94beab27b/ENCFF029WMI.bam ENCODE3 hg19 archived low read length ENCFF080EVD bam bam alignments hg19 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF000RCB/, /files/ENCFF807MUK/ 1016044870 ENCODE Processing Pipeline 8a3246a65be3e7525a6dcc94a0a0ea21 https://www.encodeproject.org/files/ENCFF080EVD/@@download/ENCFF080EVD.bam released s3://encode-public/2016/11/13/998af178-99c8-4c9a-9de5-eddfee9923b8/ENCFF080EVD.bam ENCODE3 hg19 archived low read length ENCFF664BVV bam bam unfiltered alignments hg19 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF000RCF/ 1353804488 ENCODE Processing Pipeline 0de4557d2216ff5411a51dd548ff3043 https://www.encodeproject.org/files/ENCFF664BVV/@@download/ENCFF664BVV.bam released s3://encode-public/2016/11/13/10f7eec1-a497-48ff-9073-1062c903fb51/ENCFF664BVV.bam ENCODE3 hg19 archived low read length ENCFF470EPV bam bam alignments hg19 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF000RCF/ 925034233 ENCODE Processing Pipeline 873da68838f4aa953923dc2a982e035e https://www.encodeproject.org/files/ENCFF470EPV/@@download/ENCFF470EPV.bam released s3://encode-public/2016/11/13/0df4e2e0-11e6-4523-b08d-348f72728196/ENCFF470EPV.bam ENCODE3 hg19 archived low read length ENCFF725UGE bam bam alignments hg19 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RCC/ 1102517159 ENCODE Processing Pipeline cf8da0a75854b179ef4567a63975e304 https://www.encodeproject.org/files/ENCFF725UGE/@@download/ENCFF725UGE.bam released s3://encode-public/2016/11/13/b86cb761-8de1-4178-bd48-5c036eb81c7c/ENCFF725UGE.bam ENCODE3 hg19 archived low read length ENCFF539BTX bam bam alignments GRCh38 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000RCC/, /files/ENCFF110MCL/ 1211131985 ENCODE Processing Pipeline 2d2eb1bd77004a33fb1b74b0a2780e11 https://www.encodeproject.org/files/ENCFF539BTX/@@download/ENCFF539BTX.bam released s3://encode-public/2020/10/27/10038bf4-780f-4741-9fa7-3c0699885c8a/ENCFF539BTX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF237CMB bam bam unfiltered alignments GRCh38 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF000RCF/, /files/ENCFF110MCL/ 1329962355 ENCODE Processing Pipeline e118c9dc264376cf3c4d138b36660b3d https://www.encodeproject.org/files/ENCFF237CMB/@@download/ENCFF237CMB.bam released s3://encode-public/2020/10/27/c7c0388d-5548-4bb8-bfb5-bab9ddfdadf3/ENCFF237CMB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF244IVN bam bam unfiltered alignments GRCh38 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000RCC/, /files/ENCFF110MCL/ 1612258606 ENCODE Processing Pipeline f1185051fb54671c9cbec09de951341f https://www.encodeproject.org/files/ENCFF244IVN/@@download/ENCFF244IVN.bam released s3://encode-public/2020/10/27/35bd7829-4c68-4006-a36a-4e347f771620/ENCFF244IVN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF828OAN bam bam unfiltered alignments GRCh38 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000RCB/ 1421474193 ENCODE Processing Pipeline 85207a763c5127aa82d24207ef163858 https://www.encodeproject.org/files/ENCFF828OAN/@@download/ENCFF828OAN.bam released s3://encode-public/2020/10/27/dd515627-ce0b-469d-aa8c-dcd0631a7459/ENCFF828OAN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF153UAD bam bam alignments GRCh38 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000RCB/ 1107955407 ENCODE Processing Pipeline 87daaaeeba1df3f11f3f3108f3969e8b https://www.encodeproject.org/files/ENCFF153UAD/@@download/ENCFF153UAD.bam released s3://encode-public/2020/10/27/dadbba8f-8953-42eb-ab02-eb1bc67ab118/ENCFF153UAD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF496BQY bam bam alignments GRCh38 ENCSR000BPR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-02-29 ENCODE see document 3 3_1 36 /files/ENCFF000RCF/, /files/ENCFF110MCL/ 994548022 ENCODE Processing Pipeline 54b3bc628dcc7e23c89507be6f3f78f3 https://www.encodeproject.org/files/ENCFF496BQY/@@download/ENCFF496BQY.bam released s3://encode-public/2020/10/27/5ca72337-820a-49b8-a079-65e8f2a069c6/ENCFF496BQY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF187GCK fastq fastq reads ENCSR030PDY Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 996176936 Kevin White, UChicago 1f909e4a9f6f035a507864d1da5467de https://www.encodeproject.org/files/ENCFF187GCK/@@download/ENCFF187GCK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/e410e566-51e8-4838-936f-9c78f699f181/ENCFF187GCK.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF955TAA bam bam alignments ce10 ENCSR030PDY Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF187GCK/ 1435131824 Kevin White, UChicago 81ea1af3ce843731a0ba5c30119eeaac https://www.encodeproject.org/files/ENCFF955TAA/@@download/ENCFF955TAA.bam released s3://encode-public/2015/08/07/e5e499a0-22b3-4795-9200-6fdd49cc20b2/ENCFF955TAA.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF010PIJ bigWig bigWig read-depth normalized signal ce10 ENCSR030PDY Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF955TAA/ 9966467 Kevin White, UChicago 30cc84a173b025fcff42557fdde7b457 https://www.encodeproject.org/files/ENCFF010PIJ/@@download/ENCFF010PIJ.bigWig released s3://encode-public/2015/10/02/5d5429ed-7f63-4aba-94d2-e5cb00c6d92c/ENCFF010PIJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF515CLG bigWig bigWig signal of unique reads ce10 ENCSR030PDY Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF955TAA/ 10044332 Kevin White, UChicago babfce812f7e8ca3e69b788c2397adf7 https://www.encodeproject.org/files/ENCFF515CLG/@@download/ENCFF515CLG.bigWig released s3://encode-public/2015/10/02/378b6de9-4d94-4aa1-b867-d1c11d15336c/ENCFF515CLG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF030HXD bam bam alignments ce11 ENCSR030PDY Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF187GCK/ 1436381742 Kevin White, UChicago 8791cbd3c93a4e0e26a32ff809b1676b https://www.encodeproject.org/files/ENCFF030HXD/@@download/ENCFF030HXD.bam released s3://encode-public/2016/01/20/171f7acf-a61e-4ad2-ab50-902f7a2f67d0/ENCFF030HXD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF071BCH bigWig bigWig signal of unique reads ce11 ENCSR030PDY Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF030HXD/ 10040376 Kevin White, UChicago bcd2dd47354cf291125556e01b475634 https://www.encodeproject.org/files/ENCFF071BCH/@@download/ENCFF071BCH.bigWig released s3://encode-public/2016/02/03/4ada72bb-ad65-4d49-9f37-4a8ec67b4329/ENCFF071BCH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF447SYH bigWig bigWig read-depth normalized signal ce11 ENCSR030PDY Control ChIP-seq /worm-donors/ENCDO922LRE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF030HXD/ 9961995 Kevin White, UChicago 1a52efe3f2cdc09a8539798fd924724f https://www.encodeproject.org/files/ENCFF447SYH/@@download/ENCFF447SYH.bigWig released s3://encode-public/2016/02/03/049ee35e-09d5-43e5-8a54-5b97b84b3131/ENCFF447SYH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF967XMR fastq fastq reads ENCSR163UWO Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 131352889 Kevin White, UChicago f4b7a928e2358bcc224bff9de74eab4b https://www.encodeproject.org/files/ENCFF967XMR/@@download/ENCFF967XMR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF761DEA/ released s3://encode-public/2015/07/30/a695bba1-17e4-45a8-9cb2-0a2e2e79a2b0/ENCFF967XMR.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF318XGG bam bam alignments ce10 ENCSR163UWO Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF967XMR/ 173504191 Kevin White, UChicago 1263fc2bbfc5c621e8073f16ef4e6f17 https://www.encodeproject.org/files/ENCFF318XGG/@@download/ENCFF318XGG.bam released s3://encode-public/2015/08/07/f0f9bc69-5fc0-40f9-abfe-ba5d4ed478a8/ENCFF318XGG.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF483YOW bigWig bigWig read-depth normalized signal ce10 ENCSR163UWO Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF318XGG/ 10031234 Kevin White, UChicago 4d660be2f22c6668e795951f29a17386 https://www.encodeproject.org/files/ENCFF483YOW/@@download/ENCFF483YOW.bigWig released s3://encode-public/2015/09/22/e0c18a33-397a-4942-8c52-29c5b24c7c7f/ENCFF483YOW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF083ELC bigWig bigWig signal of unique reads ce10 ENCSR163UWO Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF318XGG/ 10037239 Kevin White, UChicago 3b6ae82ef8a30913af6d7c1513f8b24e https://www.encodeproject.org/files/ENCFF083ELC/@@download/ENCFF083ELC.bigWig released s3://encode-public/2015/09/22/11ae5ecf-9c5a-4b2c-87c2-1d40acc1663b/ENCFF083ELC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF192HXE bam bam alignments ce11 ENCSR163UWO Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF967XMR/ 173713396 Kevin White, UChicago b6e0c0c5e48a370bfd1ba3a6a2c5c075 https://www.encodeproject.org/files/ENCFF192HXE/@@download/ENCFF192HXE.bam released s3://encode-public/2016/01/19/f5d56a18-819e-48be-ba6f-6aa94f6735ba/ENCFF192HXE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF665VGI bigWig bigWig signal of unique reads ce11 ENCSR163UWO Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF192HXE/ 10041294 Kevin White, UChicago 3c1e6970a6109cd04246db1009e4528c https://www.encodeproject.org/files/ENCFF665VGI/@@download/ENCFF665VGI.bigWig released s3://encode-public/2016/02/03/4aa4f876-247f-4df7-a045-110b6064ceef/ENCFF665VGI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF217XQI bigWig bigWig read-depth normalized signal ce11 ENCSR163UWO Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF192HXE/ 10029930 Kevin White, UChicago ff5ae7c1443c728fe8a643702bb5adce https://www.encodeproject.org/files/ENCFF217XQI/@@download/ENCFF217XQI.bigWig released s3://encode-public/2016/02/03/f6615cd8-ee73-4b03-909a-2be09e0747ac/ENCFF217XQI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF000NPF bam bam alignments hg19 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NPN/ 1159056595 Richard Myers, HAIB 203ad2db9099a5ccd735669c7e74b3ab https://www.encodeproject.org/files/ENCFF000NPF/@@download/ENCFF000NPF.bam archived s3://encode-public/2012/01/23/d70fdece-39ec-4403-9199-b170491d114f/ENCFF000NPF.bam Lab custom hg19 archived low read length ENCFF000NPG bigWig bigWig raw signal hg19 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 2355255 Richard Myers, HAIB 1f966c0335cc0a4ad59fbf7285c44234 https://www.encodeproject.org/files/ENCFF000NPG/@@download/ENCFF000NPG.bigWig archived s3://encode-public/2012/01/23/ef8aa9a3-0a63-4849-a97e-067860bb0f52/ENCFF000NPG.bigWig Lab custom hg19 archived low read length ENCFF000NPN fastq fastq reads ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1229037797 Richard Myers, HAIB cbf375b6af971659681450d5846a72de https://www.encodeproject.org/files/ENCFF000NPN/@@download/ENCFF000NPN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/ba104992-9885-4ee9-b989-732558edba10/ENCFF000NPN.fastq.gz low read length ENCFF594SRM bam bam unfiltered alignments GRCh38 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000NPN/ 1705870982 ENCODE Processing Pipeline 078525df9b98f0993f934a50c1119ed0 https://www.encodeproject.org/files/ENCFF594SRM/@@download/ENCFF594SRM.bam released s3://encode-public/2016/10/26/777cfba4-3150-4ac3-91e3-ae17c24868dc/ENCFF594SRM.bam ENCODE3 GRCh38 archived low read length ENCFF016HFH bam bam alignments GRCh38 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000NPN/ 1063457982 ENCODE Processing Pipeline 899564398b21ce54cb48a894ccaad1d0 https://www.encodeproject.org/files/ENCFF016HFH/@@download/ENCFF016HFH.bam released s3://encode-public/2016/10/26/1b9ba343-a3af-4a4b-9072-e453b0d424fb/ENCFF016HFH.bam ENCODE3 GRCh38 archived low read length ENCFF076WVR bam bam unfiltered alignments hg19 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000NPN/ 1697153547 ENCODE Processing Pipeline 2fc212c3e2751750618ebd66318b57ac https://www.encodeproject.org/files/ENCFF076WVR/@@download/ENCFF076WVR.bam released s3://encode-public/2016/11/13/10ceedbe-79a1-4e69-aed7-001f435f78c9/ENCFF076WVR.bam ENCODE3 hg19 archived low read length ENCFF279XQE bam bam alignments hg19 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000NPN/ 1063708462 ENCODE Processing Pipeline 5e8fae57f6577c06ae806d91e65f5337 https://www.encodeproject.org/files/ENCFF279XQE/@@download/ENCFF279XQE.bam released s3://encode-public/2016/11/13/a2ed8553-c9bf-488b-a83b-3220bf15719e/ENCFF279XQE.bam ENCODE3 hg19 archived low read length ENCFF384NPL bam bam unfiltered alignments GRCh38 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NPN/ 1679763936 ENCODE Processing Pipeline f9540c7398d2bea6dabb945c54169674 https://www.encodeproject.org/files/ENCFF384NPL/@@download/ENCFF384NPL.bam released s3://encode-public/2020/09/03/0d316159-fe36-472b-ad48-066f4d7a1fa3/ENCFF384NPL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF390NRD bam bam alignments GRCh38 ENCSR000BKX Control ChIP-seq /human-donors/ENCDO000ACV/ EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NPN/ 1160891516 ENCODE Processing Pipeline d7eed8ad84818a7ca50a020b4d31eb83 https://www.encodeproject.org/files/ENCFF390NRD/@@download/ENCFF390NRD.bam released s3://encode-public/2020/09/03/4663a715-f1f3-4da6-8748-91acae3a5fb1/ENCFF390NRD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000AGZ bigWig bigWig signal hg19 ENCSR000ASR Control ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 532779991 Bradley Bernstein, Broad 38ac0e49ade1286700ba02beda4b64b6 https://www.encodeproject.org/files/ENCFF000AGZ/@@download/ENCFF000AGZ.bigWig archived s3://encode-public/2010/11/16/5825614a-8b41-4a30-8e56-4f6cc75faa00/ENCFF000AGZ.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000AHA bam bam alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000AHE/ 776557656 Bradley Bernstein, Broad 08cf9102c8abdda1bc39264f295550ae https://www.encodeproject.org/files/ENCFF000AHA/@@download/ENCFF000AHA.bam archived s3://encode-public/2010/11/16/e1aa7e32-3c6d-4c77-b6ee-23ec4bf703ff/ENCFF000AHA.bam Lab custom hg19 archived low read depth, low read length ENCFF000AHB bam bam alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHJ/ 1331192042 Bradley Bernstein, Broad add434e88b237069a1dcf1535c25b60c https://www.encodeproject.org/files/ENCFF000AHB/@@download/ENCFF000AHB.bam archived s3://encode-public/2010/11/16/9a94aced-4ca0-49a0-8b61-e179b3bd1103/ENCFF000AHB.bam Lab custom hg19 archived low read depth, low read length ENCFF000AHE fastq fastq reads ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 single-ended 739410374 Bradley Bernstein, Broad 1565089f4407fafa761ec76e8999abb1 https://www.encodeproject.org/files/ENCFF000AHE/@@download/ENCFF000AHE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2010/11/16/67954d8f-e258-4c51-a4bc-0fb746112c81/ENCFF000AHE.fastq.gz low read depth, low read length ENCFF000AHJ fastq fastq reads ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 single-ended 1238350207 Bradley Bernstein, Broad 47d3bffdfa6c4ab650680e2b94cf4389 https://www.encodeproject.org/files/ENCFF000AHJ/@@download/ENCFF000AHJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2010/11/16/82d86309-b83f-4523-8425-1efd84f7f122/ENCFF000AHJ.fastq.gz low read depth, low read length ENCFF227MOQ bam bam unfiltered alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHE/ 979570959 ENCODE Processing Pipeline f9568cb5c8508f0c46cb7a49ab9a41f3 https://www.encodeproject.org/files/ENCFF227MOQ/@@download/ENCFF227MOQ.bam released s3://encode-public/2016/08/12/b15ffd06-d59c-458e-8632-e2f7589d5995/ENCFF227MOQ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF514TMK bam bam alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHE/ 658772505 ENCODE Processing Pipeline 1f23d0824ac229c3beb6f936b5771baf https://www.encodeproject.org/files/ENCFF514TMK/@@download/ENCFF514TMK.bam released s3://encode-public/2016/08/12/f45298dd-3aa2-4f77-a5da-3f088a72e5ac/ENCFF514TMK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF284JEI bam bam unfiltered alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHJ/ 1639244562 ENCODE Processing Pipeline 01d4171544ba17ed0033a4f2e2c239ea https://www.encodeproject.org/files/ENCFF284JEI/@@download/ENCFF284JEI.bam released s3://encode-public/2016/08/12/46de7262-24ca-4a6b-978c-1e98ebc0c6dc/ENCFF284JEI.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF569SHN bam bam alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHJ/ 1152053102 ENCODE Processing Pipeline a6e696d22d620fbb1503edf2df9c1dbe https://www.encodeproject.org/files/ENCFF569SHN/@@download/ENCFF569SHN.bam released s3://encode-public/2016/08/12/28962cea-6f42-4a3c-b767-ae7304562a10/ENCFF569SHN.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF990BDZ fastq fastq reads ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 single-ended 345451743 Bradley Bernstein, Broad fb5fc67ed9ada58b8c4f6d623ceb5cc1 https://www.encodeproject.org/files/ENCFF990BDZ/@@download/ENCFF990BDZ.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/26/cad1248e-812a-49da-b593-0a910f0243a0/ENCFF990BDZ.fastq.gz low read depth, low read length ENCFF274LEX fastq fastq reads ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 single-ended 340832090 Bradley Bernstein, Broad ca61ff3991c124f95499c3a1a1a82e36 https://www.encodeproject.org/files/ENCFF274LEX/@@download/ENCFF274LEX.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/26/c6339f9d-d2a9-44ee-8b7e-6c6456576987/ENCFF274LEX.fastq.gz low read depth, low read length ENCFF800GUG bam bam unfiltered alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHE/ 974055089 ENCODE Processing Pipeline 8495648af21ea2926c674e31ca9698c4 https://www.encodeproject.org/files/ENCFF800GUG/@@download/ENCFF800GUG.bam released s3://encode-public/2017/04/17/4b87e22f-467f-4c57-a0d5-238f382f1727/ENCFF800GUG.bam ENCODE3 hg19 archived low read depth, low read length ENCFF698OND bam bam alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHE/ 658846154 ENCODE Processing Pipeline 703c5287a05e3e067e633c89bdeb05b8 https://www.encodeproject.org/files/ENCFF698OND/@@download/ENCFF698OND.bam released s3://encode-public/2017/04/17/5e61060c-d88f-4b39-9eba-76ce936eda5f/ENCFF698OND.bam ENCODE3 hg19 archived low read depth, low read length ENCFF016EQS bam bam unfiltered alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHJ/ 1628254336 ENCODE Processing Pipeline 2a5ed0c671a7b8a5d992d55c75eda30c https://www.encodeproject.org/files/ENCFF016EQS/@@download/ENCFF016EQS.bam released s3://encode-public/2017/04/17/94781fbd-e1a6-40dc-8c16-d540731ec8d4/ENCFF016EQS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF289PMY bam bam alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHJ/ 1152097237 ENCODE Processing Pipeline b02f376e9520dc03640f69aab827261f https://www.encodeproject.org/files/ENCFF289PMY/@@download/ENCFF289PMY.bam released s3://encode-public/2017/04/17/58dcd090-5eb8-464f-9afd-c8a0e395f037/ENCFF289PMY.bam ENCODE3 hg19 archived low read depth, low read length ENCFF123PXR bam bam unfiltered alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHE/ 974055093 ENCODE Processing Pipeline ec64106c4999d7a4fe28864d2d3a3998 https://www.encodeproject.org/files/ENCFF123PXR/@@download/ENCFF123PXR.bam released s3://encode-public/2020/02/06/d43b5444-4ef3-4524-90ac-1f5b909ffbd2/ENCFF123PXR.bam low read depth, low read length ENCFF468NDH bam bam alignments hg19 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHE/ 658846158 ENCODE Processing Pipeline 991b434b450560290c26e0549a620e94 https://www.encodeproject.org/files/ENCFF468NDH/@@download/ENCFF468NDH.bam released s3://encode-public/2020/02/06/78382465-c6da-4268-bf58-df5dcb824e2a/ENCFF468NDH.bam low read depth, low read length ENCFF947BMJ bam bam unfiltered alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHE/ 953793900 ENCODE Processing Pipeline 718ca5c80b4775f5f80057b5baa1de88 https://www.encodeproject.org/files/ENCFF947BMJ/@@download/ENCFF947BMJ.bam released s3://encode-public/2020/09/03/274f8589-0bf7-49d9-950d-cb3ca3a2a45a/ENCFF947BMJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF392CVA bam bam alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHJ/ 1247157072 ENCODE Processing Pipeline 32734a41936308f057bc9b3e86c664e7 https://www.encodeproject.org/files/ENCFF392CVA/@@download/ENCFF392CVA.bam released s3://encode-public/2020/09/03/196419ac-5e94-4c94-b937-70871f1dcc6c/ENCFF392CVA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF310XWJ bam bam alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHE/ 717241037 ENCODE Processing Pipeline 694f65ec46099a8fd293b251c1ad1aa6 https://www.encodeproject.org/files/ENCFF310XWJ/@@download/ENCFF310XWJ.bam released s3://encode-public/2020/09/03/f69c61e4-4927-423a-a6e9-722f3c3e90d2/ENCFF310XWJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF368ZDN bam bam unfiltered alignments GRCh38 ENCSR000ASR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHJ/ 1586444046 ENCODE Processing Pipeline 2d70200149a209b7ce0b6016d90cc864 https://www.encodeproject.org/files/ENCFF368ZDN/@@download/ENCFF368ZDN.bam released s3://encode-public/2020/09/03/b2704b03-fd72-463c-ac6b-32677398e436/ENCFF368ZDN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF436XJK fastq fastq reads ENCSR654ODD Control ChIP-seq /worm-donors/ENCDO613PVS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175167/'], '@type': ['Target', 'Item'], 'name': 'nhr-80-celegans', 'label': 'nhr-80', '@id': '/targets/nhr-80-celegans/', 'title': 'nhr-80 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '34567ef8-470f-4e91-96fa-f5920f6ec892', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 455938710 Kevin White, UChicago 249c8b89e97888355bb5b9798c34addd https://www.encodeproject.org/files/ENCFF436XJK/@@download/ENCFF436XJK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/9e489429-ac4b-4584-a84a-ae42aa8a7e8e/ENCFF436XJK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF985NWZ bam bam alignments ce10 ENCSR654ODD Control ChIP-seq /worm-donors/ENCDO613PVS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175167/'], '@type': ['Target', 'Item'], 'name': 'nhr-80-celegans', 'label': 'nhr-80', '@id': '/targets/nhr-80-celegans/', 'title': 'nhr-80 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '34567ef8-470f-4e91-96fa-f5920f6ec892', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF436XJK/ 661413632 Kevin White, UChicago 67ac0b29526a454c28febd722e471639 https://www.encodeproject.org/files/ENCFF985NWZ/@@download/ENCFF985NWZ.bam released s3://encode-public/2015/08/07/f45a7b7d-943a-4279-8441-6d849f13e43f/ENCFF985NWZ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF943LCI bigWig bigWig read-depth normalized signal ce10 ENCSR654ODD Control ChIP-seq /worm-donors/ENCDO613PVS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175167/'], '@type': ['Target', 'Item'], 'name': 'nhr-80-celegans', 'label': 'nhr-80', '@id': '/targets/nhr-80-celegans/', 'title': 'nhr-80 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '34567ef8-470f-4e91-96fa-f5920f6ec892', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF985NWZ/ 9971425 Kevin White, UChicago 2f9b73e13bb7a7a83fa43516a26c25fa https://www.encodeproject.org/files/ENCFF943LCI/@@download/ENCFF943LCI.bigWig released s3://encode-public/2015/10/02/3232e03c-31fb-4cda-96ad-371fdcc27904/ENCFF943LCI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF511TEX bigWig bigWig signal of unique reads ce10 ENCSR654ODD Control ChIP-seq /worm-donors/ENCDO613PVS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175167/'], '@type': ['Target', 'Item'], 'name': 'nhr-80-celegans', 'label': 'nhr-80', '@id': '/targets/nhr-80-celegans/', 'title': 'nhr-80 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '34567ef8-470f-4e91-96fa-f5920f6ec892', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF985NWZ/ 9950157 Kevin White, UChicago 7c819c0a53c56672c7f0696a558792de https://www.encodeproject.org/files/ENCFF511TEX/@@download/ENCFF511TEX.bigWig released s3://encode-public/2015/10/02/9bc5b719-fc15-4c8d-92ec-b64665602f3f/ENCFF511TEX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF058VAD bam bam alignments ce11 ENCSR654ODD Control ChIP-seq /worm-donors/ENCDO613PVS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175167/'], '@type': ['Target', 'Item'], 'name': 'nhr-80-celegans', 'label': 'nhr-80', '@id': '/targets/nhr-80-celegans/', 'title': 'nhr-80 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '34567ef8-470f-4e91-96fa-f5920f6ec892', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF436XJK/ 661996397 Kevin White, UChicago 41694ca61106b8476cdb4bdc7d907521 https://www.encodeproject.org/files/ENCFF058VAD/@@download/ENCFF058VAD.bam released s3://encode-public/2016/01/19/6809a92d-2dce-4946-9898-2121947a0491/ENCFF058VAD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF854OAO bigWig bigWig signal of unique reads ce11 ENCSR654ODD Control ChIP-seq /worm-donors/ENCDO613PVS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175167/'], '@type': ['Target', 'Item'], 'name': 'nhr-80-celegans', 'label': 'nhr-80', '@id': '/targets/nhr-80-celegans/', 'title': 'nhr-80 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '34567ef8-470f-4e91-96fa-f5920f6ec892', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF058VAD/ 9948731 Kevin White, UChicago f07032c1e5e98391cf2b635bbe7022ff https://www.encodeproject.org/files/ENCFF854OAO/@@download/ENCFF854OAO.bigWig released s3://encode-public/2016/02/03/b54b687d-cf35-400f-a03a-ce50e67250d3/ENCFF854OAO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF871JLU bigWig bigWig read-depth normalized signal ce11 ENCSR654ODD Control ChIP-seq /worm-donors/ENCDO613PVS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175167/'], '@type': ['Target', 'Item'], 'name': 'nhr-80-celegans', 'label': 'nhr-80', '@id': '/targets/nhr-80-celegans/', 'title': 'nhr-80 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '34567ef8-470f-4e91-96fa-f5920f6ec892', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF058VAD/ 9969115 Kevin White, UChicago 47e489380cca0760719154a601724d93 https://www.encodeproject.org/files/ENCFF871JLU/@@download/ENCFF871JLU.bigWig released s3://encode-public/2016/02/03/fba611cc-7462-48fc-98e0-b5ef3c296ffc/ENCFF871JLU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF000ZVH bam bam alignments hg19 ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVP/ 893101227 Kevin White, UChicago bf7fcfa07b9abd04abc404fff8c1a1ff https://www.encodeproject.org/files/ENCFF000ZVH/@@download/ENCFF000ZVH.bam archived s3://encode-public/2011/01/27/c8da16b7-104d-40ee-8025-1308ba40e96d/ENCFF000ZVH.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000ZVP fastq fastq reads ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 single-ended 1155318798 Kevin White, UChicago a0b6ebb4a7a215a77fc26cc14edac3b7 https://www.encodeproject.org/files/ENCFF000ZVP/@@download/ENCFF000ZVP.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/01/27/21498d83-8535-4c34-977e-af20de638c09/ENCFF000ZVP.fastq.gz mild to moderate bottlenecking, low read length ENCFF293JKT bam bam unfiltered alignments GRCh38 ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZVP/ 1378415712 ENCODE Processing Pipeline 953aca674d21e7114ceee22bb370b7c8 https://www.encodeproject.org/files/ENCFF293JKT/@@download/ENCFF293JKT.bam released s3://encode-public/2016/08/23/4e65781c-a2f5-420d-b2a1-79a3d8d3803c/ENCFF293JKT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF510BRO bam bam alignments GRCh38 ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZVP/ 852439296 ENCODE Processing Pipeline 275b2256c733647b3d77eef74267d408 https://www.encodeproject.org/files/ENCFF510BRO/@@download/ENCFF510BRO.bam released s3://encode-public/2016/08/23/b0054374-2c9d-43dd-8e6d-691cc5b29d66/ENCFF510BRO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF998TMC bam bam alignments hg19 ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZVP/ 852917305 ENCODE Processing Pipeline 9604a10873260f9d506f9ca8d5841c20 https://www.encodeproject.org/files/ENCFF998TMC/@@download/ENCFF998TMC.bam released s3://encode-public/2016/08/23/75a57a77-53e0-46c7-ae9e-e37aa570ca90/ENCFF998TMC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF516DAM bam bam unfiltered alignments hg19 ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZVP/ 1370518579 ENCODE Processing Pipeline 1a6d299c055466ac31540c130d35ed5f https://www.encodeproject.org/files/ENCFF516DAM/@@download/ENCFF516DAM.bam released s3://encode-public/2016/08/23/f9f7ed54-0743-4b6a-8562-021557f1b80d/ENCFF516DAM.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF934QVQ bam bam unfiltered alignments GRCh38 ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZVP/ 1348682941 ENCODE Processing Pipeline 5b6ac182813396a3de6ef0b9a8dfe4e5 https://www.encodeproject.org/files/ENCFF934QVQ/@@download/ENCFF934QVQ.bam released s3://encode-public/2020/10/27/fadac297-ba10-4d91-a4c0-26dd90523dda/ENCFF934QVQ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF495UNE bam bam alignments GRCh38 ENCSR000DKG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZVP/ 933900498 ENCODE Processing Pipeline 312d47b703be697fe2373955730fb7b0 https://www.encodeproject.org/files/ENCFF495UNE/@@download/ENCFF495UNE.bam released s3://encode-public/2020/10/27/6703a918-1506-4eb8-a149-61ebd001bcfc/ENCFF495UNE.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF315RYP fastq fastq reads ENCSR449ROG Control ChIP-seq /worm-donors/ENCDO061XOS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175096/'], '@type': ['Target', 'Item'], 'name': 'mes-2-celegans', 'label': 'mes-2', '@id': '/targets/mes-2-celegans/', 'title': 'mes-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '2ef2cd40-f446-4e68-8941-a6de35cf040d', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 1609517036 Kevin White, UChicago 0f1a8376ff224ed6990a66e23cfb7417 https://www.encodeproject.org/files/ENCFF315RYP/@@download/ENCFF315RYP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/0309d81c-61b5-4cca-87cb-28cb69264531/ENCFF315RYP.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF623ODH bam bam alignments ce10 ENCSR449ROG Control ChIP-seq /worm-donors/ENCDO061XOS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175096/'], '@type': ['Target', 'Item'], 'name': 'mes-2-celegans', 'label': 'mes-2', '@id': '/targets/mes-2-celegans/', 'title': 'mes-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '2ef2cd40-f446-4e68-8941-a6de35cf040d', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF315RYP/ 2201433401 Kevin White, UChicago 38879cba7dddf6532def7428c911c7b3 https://www.encodeproject.org/files/ENCFF623ODH/@@download/ENCFF623ODH.bam released s3://encode-public/2015/08/07/2dc70286-14f9-493f-b1bc-9ba8a0b0aa1b/ENCFF623ODH.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF269UXE bigWig bigWig signal of unique reads ce10 ENCSR449ROG Control ChIP-seq /worm-donors/ENCDO061XOS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175096/'], '@type': ['Target', 'Item'], 'name': 'mes-2-celegans', 'label': 'mes-2', '@id': '/targets/mes-2-celegans/', 'title': 'mes-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '2ef2cd40-f446-4e68-8941-a6de35cf040d', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF623ODH/ 9983460 Kevin White, UChicago 1825b12b40576ecfa7334074978ed97f https://www.encodeproject.org/files/ENCFF269UXE/@@download/ENCFF269UXE.bigWig released s3://encode-public/2015/10/02/55b447b9-87f2-4876-ac68-51a8a81cccd1/ENCFF269UXE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF807VDU bigWig bigWig read-depth normalized signal ce10 ENCSR449ROG Control ChIP-seq /worm-donors/ENCDO061XOS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175096/'], '@type': ['Target', 'Item'], 'name': 'mes-2-celegans', 'label': 'mes-2', '@id': '/targets/mes-2-celegans/', 'title': 'mes-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '2ef2cd40-f446-4e68-8941-a6de35cf040d', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF623ODH/ 9944628 Kevin White, UChicago 07e8478f36f04fb3e3a76dea61ab23aa https://www.encodeproject.org/files/ENCFF807VDU/@@download/ENCFF807VDU.bigWig released s3://encode-public/2015/10/02/9fd2bd59-18bd-4694-af2a-cb0608dc611f/ENCFF807VDU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF704TYN bam bam alignments ce11 ENCSR449ROG Control ChIP-seq /worm-donors/ENCDO061XOS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175096/'], '@type': ['Target', 'Item'], 'name': 'mes-2-celegans', 'label': 'mes-2', '@id': '/targets/mes-2-celegans/', 'title': 'mes-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '2ef2cd40-f446-4e68-8941-a6de35cf040d', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF315RYP/ 2203318945 Kevin White, UChicago a81ead6778f9dda18a0af4a9ae6eaa31 https://www.encodeproject.org/files/ENCFF704TYN/@@download/ENCFF704TYN.bam released s3://encode-public/2016/01/19/d7b5d644-10fa-4b7f-b9a9-b9a4bd4dff82/ENCFF704TYN.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF060XPE bigWig bigWig signal of unique reads ce11 ENCSR449ROG Control ChIP-seq /worm-donors/ENCDO061XOS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175096/'], '@type': ['Target', 'Item'], 'name': 'mes-2-celegans', 'label': 'mes-2', '@id': '/targets/mes-2-celegans/', 'title': 'mes-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '2ef2cd40-f446-4e68-8941-a6de35cf040d', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF704TYN/ 9979535 Kevin White, UChicago 4bccd3ad12450dc320db4c2cfff106ac https://www.encodeproject.org/files/ENCFF060XPE/@@download/ENCFF060XPE.bigWig released s3://encode-public/2016/02/03/59feefce-1d3b-418b-af9f-0d6de31c8404/ENCFF060XPE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF509PSB bigWig bigWig read-depth normalized signal ce11 ENCSR449ROG Control ChIP-seq /worm-donors/ENCDO061XOS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175096/'], '@type': ['Target', 'Item'], 'name': 'mes-2-celegans', 'label': 'mes-2', '@id': '/targets/mes-2-celegans/', 'title': 'mes-2 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '2ef2cd40-f446-4e68-8941-a6de35cf040d', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF704TYN/ 9940447 Kevin White, UChicago b97c195ef3fc704a3f7b8ed1874cd87a https://www.encodeproject.org/files/ENCFF509PSB/@@download/ENCFF509PSB.bigWig released s3://encode-public/2016/02/03/0bb2eaf5-515f-4a45-a3c5-0be29adbda2b/ENCFF509PSB.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF772DFZ fastq fastq reads ENCSR075HOL Control ChIP-seq /fly-donors/ENCDO359EJW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34706/'], '@type': ['Target', 'Item'], 'name': 'CG5204-dmelanogaster', 'label': 'CG5204', '@id': '/targets/CG5204-dmelanogaster/', 'title': 'CG5204 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '04a846f7-f2fb-4be8-8e60-500e683188f2', 'status': 'released'} dm3 2L 13149267 13168298 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 572745626 Kevin White, UChicago 21abf09c126c947f68b7e014a48e69c2 https://www.encodeproject.org/files/ENCFF772DFZ/@@download/ENCFF772DFZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/e7db8620-21a3-4ea1-ac71-33b295ab50ae/ENCFF772DFZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF187JIR bam bam alignments dm3 ENCSR075HOL Control ChIP-seq /fly-donors/ENCDO359EJW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34706/'], '@type': ['Target', 'Item'], 'name': 'CG5204-dmelanogaster', 'label': 'CG5204', '@id': '/targets/CG5204-dmelanogaster/', 'title': 'CG5204 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '04a846f7-f2fb-4be8-8e60-500e683188f2', 'status': 'released'} dm3 2L 13149267 13168298 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF772DFZ/ 780822699 Kevin White, UChicago 4859292ab313d546a1d1b20b995efba4 https://www.encodeproject.org/files/ENCFF187JIR/@@download/ENCFF187JIR.bam released s3://encode-public/2015/08/03/293411e7-a86f-4bfb-83fd-9a2ee173afeb/ENCFF187JIR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF747JQZ bigWig bigWig read-depth normalized signal dm3 ENCSR075HOL Control ChIP-seq /fly-donors/ENCDO359EJW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34706/'], '@type': ['Target', 'Item'], 'name': 'CG5204-dmelanogaster', 'label': 'CG5204', '@id': '/targets/CG5204-dmelanogaster/', 'title': 'CG5204 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '04a846f7-f2fb-4be8-8e60-500e683188f2', 'status': 'released'} dm3 2L 13149267 13168298 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF187JIR/ 15234119 Kevin White, UChicago d089e1342919799805c0a2ef3d744595 https://www.encodeproject.org/files/ENCFF747JQZ/@@download/ENCFF747JQZ.bigWig released s3://encode-public/2015/10/06/9c33b442-a953-4d6f-864e-d5daf337e3df/ENCFF747JQZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF501CVJ bigWig bigWig signal of unique reads dm3 ENCSR075HOL Control ChIP-seq /fly-donors/ENCDO359EJW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34706/'], '@type': ['Target', 'Item'], 'name': 'CG5204-dmelanogaster', 'label': 'CG5204', '@id': '/targets/CG5204-dmelanogaster/', 'title': 'CG5204 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '04a846f7-f2fb-4be8-8e60-500e683188f2', 'status': 'released'} dm3 2L 13149267 13168298 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF187JIR/ 15241824 Kevin White, UChicago 993c21182a4f5ce0b0dc74405d838b4e https://www.encodeproject.org/files/ENCFF501CVJ/@@download/ENCFF501CVJ.bigWig released s3://encode-public/2015/10/06/4a17b82d-61e2-44c7-8083-dd74df0c8ff7/ENCFF501CVJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF617PWI bam bam alignments dm6 ENCSR075HOL Control ChIP-seq /fly-donors/ENCDO359EJW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34706/'], '@type': ['Target', 'Item'], 'name': 'CG5204-dmelanogaster', 'label': 'CG5204', '@id': '/targets/CG5204-dmelanogaster/', 'title': 'CG5204 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '04a846f7-f2fb-4be8-8e60-500e683188f2', 'status': 'released'} dm3 2L 13149267 13168298 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF772DFZ/ 774724061 Kevin White, UChicago 8cf0cac57b7bea413750c12d88e87438 https://www.encodeproject.org/files/ENCFF617PWI/@@download/ENCFF617PWI.bam released s3://encode-public/2016/04/21/d9e4aa13-1a27-4bcb-b47c-9bb4fe4d0504/ENCFF617PWI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF973XCY bigWig bigWig read-depth normalized signal dm6 ENCSR075HOL Control ChIP-seq /fly-donors/ENCDO359EJW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34706/'], '@type': ['Target', 'Item'], 'name': 'CG5204-dmelanogaster', 'label': 'CG5204', '@id': '/targets/CG5204-dmelanogaster/', 'title': 'CG5204 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '04a846f7-f2fb-4be8-8e60-500e683188f2', 'status': 'released'} dm3 2L 13149267 13168298 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF617PWI/ 17337773 Kevin White, UChicago 21137cbd0dd6161c91b0c62e10d67d76 https://www.encodeproject.org/files/ENCFF973XCY/@@download/ENCFF973XCY.bigWig released s3://encode-public/2016/06/20/36f72f10-709d-4600-bca0-b662da37678e/ENCFF973XCY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF668NFA bigWig bigWig signal of unique reads dm6 ENCSR075HOL Control ChIP-seq /fly-donors/ENCDO359EJW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34706/'], '@type': ['Target', 'Item'], 'name': 'CG5204-dmelanogaster', 'label': 'CG5204', '@id': '/targets/CG5204-dmelanogaster/', 'title': 'CG5204 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '04a846f7-f2fb-4be8-8e60-500e683188f2', 'status': 'released'} dm3 2L 13149267 13168298 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF617PWI/ 17347864 Kevin White, UChicago c30866e33768a010e91abb070eb285a6 https://www.encodeproject.org/files/ENCFF668NFA/@@download/ENCFF668NFA.bigWig released s3://encode-public/2016/06/20/3e18bf81-6a3d-4536-abae-1f1980ddf6a2/ENCFF668NFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF646ZMP fastq fastq reads ENCSR782XFF Control ChIP-seq /worm-donors/ENCDO127EON/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178121/'], '@type': ['Target', 'Item'], 'name': 'nhr-43-celegans', 'label': 'nhr-43', '@id': '/targets/nhr-43-celegans/', 'title': 'nhr-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'da0c91a9-4f69-4804-b4ff-b1e2844f64a3', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 617274717 Kevin White, UChicago dee4cd4b40bf7caa0ebdc84a8863d23c https://www.encodeproject.org/files/ENCFF646ZMP/@@download/ENCFF646ZMP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/55ede9eb-bcaf-42a9-9a27-7bab114409a0/ENCFF646ZMP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF458MFC bam bam alignments ce10 ENCSR782XFF Control ChIP-seq /worm-donors/ENCDO127EON/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178121/'], '@type': ['Target', 'Item'], 'name': 'nhr-43-celegans', 'label': 'nhr-43', '@id': '/targets/nhr-43-celegans/', 'title': 'nhr-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'da0c91a9-4f69-4804-b4ff-b1e2844f64a3', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF646ZMP/ 822015818 Kevin White, UChicago 4dd793c0b2b095de5bb068dda480ffa0 https://www.encodeproject.org/files/ENCFF458MFC/@@download/ENCFF458MFC.bam released s3://encode-public/2015/08/07/47384014-b72b-44d5-a083-b1b6ac18fbc1/ENCFF458MFC.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF522KPR bigWig bigWig signal of unique reads ce10 ENCSR782XFF Control ChIP-seq /worm-donors/ENCDO127EON/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178121/'], '@type': ['Target', 'Item'], 'name': 'nhr-43-celegans', 'label': 'nhr-43', '@id': '/targets/nhr-43-celegans/', 'title': 'nhr-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'da0c91a9-4f69-4804-b4ff-b1e2844f64a3', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF458MFC/ 9994237 Kevin White, UChicago 43b7c0033416000c0ad3393b0db375f0 https://www.encodeproject.org/files/ENCFF522KPR/@@download/ENCFF522KPR.bigWig released s3://encode-public/2015/10/02/61229de2-5244-4430-a59e-f15261528c54/ENCFF522KPR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF707LLV bigWig bigWig read-depth normalized signal ce10 ENCSR782XFF Control ChIP-seq /worm-donors/ENCDO127EON/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178121/'], '@type': ['Target', 'Item'], 'name': 'nhr-43-celegans', 'label': 'nhr-43', '@id': '/targets/nhr-43-celegans/', 'title': 'nhr-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'da0c91a9-4f69-4804-b4ff-b1e2844f64a3', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF458MFC/ 10055741 Kevin White, UChicago 474ae7f2749e7e1398300411509d067f https://www.encodeproject.org/files/ENCFF707LLV/@@download/ENCFF707LLV.bigWig released s3://encode-public/2015/10/02/5f42d7aa-d05a-4463-9ab2-15bc1faa9004/ENCFF707LLV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF737GEQ bam bam alignments ce11 ENCSR782XFF Control ChIP-seq /worm-donors/ENCDO127EON/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178121/'], '@type': ['Target', 'Item'], 'name': 'nhr-43-celegans', 'label': 'nhr-43', '@id': '/targets/nhr-43-celegans/', 'title': 'nhr-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'da0c91a9-4f69-4804-b4ff-b1e2844f64a3', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF646ZMP/ 822656338 Kevin White, UChicago 32853e2bea133e2825a3cf047f9bcd30 https://www.encodeproject.org/files/ENCFF737GEQ/@@download/ENCFF737GEQ.bam released s3://encode-public/2016/01/19/6288e9db-2f23-421b-b78f-ee5ecdfbcd83/ENCFF737GEQ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF892JMI bigWig bigWig signal of unique reads ce11 ENCSR782XFF Control ChIP-seq /worm-donors/ENCDO127EON/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178121/'], '@type': ['Target', 'Item'], 'name': 'nhr-43-celegans', 'label': 'nhr-43', '@id': '/targets/nhr-43-celegans/', 'title': 'nhr-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'da0c91a9-4f69-4804-b4ff-b1e2844f64a3', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF737GEQ/ 9989935 Kevin White, UChicago e9ac2da72e99c8a0d1eeae6c1f40489b https://www.encodeproject.org/files/ENCFF892JMI/@@download/ENCFF892JMI.bigWig released s3://encode-public/2016/02/03/d5ca7b76-76e1-4c54-92db-3d92dff26906/ENCFF892JMI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF853XMH bigWig bigWig read-depth normalized signal ce11 ENCSR782XFF Control ChIP-seq /worm-donors/ENCDO127EON/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178121/'], '@type': ['Target', 'Item'], 'name': 'nhr-43-celegans', 'label': 'nhr-43', '@id': '/targets/nhr-43-celegans/', 'title': 'nhr-43 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'da0c91a9-4f69-4804-b4ff-b1e2844f64a3', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF737GEQ/ 10052536 Kevin White, UChicago c39d210e8d81f6c8c2aa9b036b9ec30e https://www.encodeproject.org/files/ENCFF853XMH/@@download/ENCFF853XMH.bigWig released s3://encode-public/2016/02/03/8ce83b30-003d-4915-87ee-27f2be4a8bf6/ENCFF853XMH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF622JII fastq fastq reads ENCSR766WPH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF329HVB/ 1881821817 Michael Snyder, Stanford 5219cca93eb2b21111dc0daf84acbc27 SRA:SRR14637663 https://www.encodeproject.org/files/ENCFF622JII/@@download/ENCFF622JII.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/02/10/11a4d61f-b1b9-4658-bb28-988b433ef95d/ENCFF622JII.fastq.gz mild to moderate bottlenecking ENCFF329HVB fastq fastq reads ENCSR766WPH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF622JII/ 1935518569 Michael Snyder, Stanford 45c87845082bd283a7e8e75bb4ffbe78 SRA:SRR14637663 https://www.encodeproject.org/files/ENCFF329HVB/@@download/ENCFF329HVB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/02/10/3d15609d-f1e6-402d-9de6-a6ecf2d02e75/ENCFF329HVB.fastq.gz mild to moderate bottlenecking ENCFF138SFR bam bam unfiltered alignments GRCh38 ENCSR766WPH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF622JII/, /files/ENCFF329HVB/ 3746495387 ENCODE Processing Pipeline 9fcd029a0a73fa894d11aa436789812e https://www.encodeproject.org/files/ENCFF138SFR/@@download/ENCFF138SFR.bam released s3://encode-public/2021/03/18/9c84ff2a-bbf4-49f8-9151-c7a985ba7169/ENCFF138SFR.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking ENCFF545KID bam bam alignments GRCh38 ENCSR766WPH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF622JII/, /files/ENCFF329HVB/ 2877678495 ENCODE Processing Pipeline 77497c13941999b34190a533618fddf7 https://www.encodeproject.org/files/ENCFF545KID/@@download/ENCFF545KID.bam released s3://encode-public/2021/03/18/621cfdfe-8025-4c35-8ca4-0c94840cbc25/ENCFF545KID.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking ENCFF797OLT fastq fastq reads ENCSR942UFE Control ChIP-seq /worm-donors/ENCDO628CNU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181491/'], '@type': ['Target', 'Item'], 'name': 'nhr-71-celegans', 'label': 'nhr-71', '@id': '/targets/nhr-71-celegans/', 'title': 'nhr-71 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bd8fe99a-fdc3-4b45-9b3e-4e3f137a5746', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 703836849 Kevin White, UChicago ebebe0f16e22c1a1246477d3456cfa1f https://www.encodeproject.org/files/ENCFF797OLT/@@download/ENCFF797OLT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/361d0d68-6f3d-4ecd-88dc-8dbbfb143f0e/ENCFF797OLT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF348EHT bam bam alignments ce10 ENCSR942UFE Control ChIP-seq /worm-donors/ENCDO628CNU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181491/'], '@type': ['Target', 'Item'], 'name': 'nhr-71-celegans', 'label': 'nhr-71', '@id': '/targets/nhr-71-celegans/', 'title': 'nhr-71 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bd8fe99a-fdc3-4b45-9b3e-4e3f137a5746', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF797OLT/ 995825887 Kevin White, UChicago 24c875c4acc38e01f24833bd35c279ce https://www.encodeproject.org/files/ENCFF348EHT/@@download/ENCFF348EHT.bam released s3://encode-public/2015/08/07/7fa2dcf2-b06f-43c2-aca1-cd0777bd167d/ENCFF348EHT.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF891EHV bigWig bigWig read-depth normalized signal ce10 ENCSR942UFE Control ChIP-seq /worm-donors/ENCDO628CNU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181491/'], '@type': ['Target', 'Item'], 'name': 'nhr-71-celegans', 'label': 'nhr-71', '@id': '/targets/nhr-71-celegans/', 'title': 'nhr-71 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bd8fe99a-fdc3-4b45-9b3e-4e3f137a5746', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF348EHT/ 10012266 Kevin White, UChicago 1908649ca108e2bec5ff781f8a966b99 https://www.encodeproject.org/files/ENCFF891EHV/@@download/ENCFF891EHV.bigWig released s3://encode-public/2015/10/02/21f75a2c-ba32-4839-81fa-f1658efbce5f/ENCFF891EHV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF378TRT bigWig bigWig signal of unique reads ce10 ENCSR942UFE Control ChIP-seq /worm-donors/ENCDO628CNU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181491/'], '@type': ['Target', 'Item'], 'name': 'nhr-71-celegans', 'label': 'nhr-71', '@id': '/targets/nhr-71-celegans/', 'title': 'nhr-71 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bd8fe99a-fdc3-4b45-9b3e-4e3f137a5746', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF348EHT/ 10004680 Kevin White, UChicago 72eab12a1fcbfe11bb2ff7f553aca59e https://www.encodeproject.org/files/ENCFF378TRT/@@download/ENCFF378TRT.bigWig released s3://encode-public/2015/10/02/5b8ad68b-63f7-4893-b6bd-5698b910fec7/ENCFF378TRT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF814KZP bam bam alignments ce11 ENCSR942UFE Control ChIP-seq /worm-donors/ENCDO628CNU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181491/'], '@type': ['Target', 'Item'], 'name': 'nhr-71-celegans', 'label': 'nhr-71', '@id': '/targets/nhr-71-celegans/', 'title': 'nhr-71 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bd8fe99a-fdc3-4b45-9b3e-4e3f137a5746', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF797OLT/ 996665357 Kevin White, UChicago 8e556fcb1a08c66de5a606f6722d76e6 https://www.encodeproject.org/files/ENCFF814KZP/@@download/ENCFF814KZP.bam released s3://encode-public/2016/01/19/fcc167f5-0ae0-4be9-8173-252d275f6b91/ENCFF814KZP.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF490QOM bigWig bigWig signal of unique reads ce11 ENCSR942UFE Control ChIP-seq /worm-donors/ENCDO628CNU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181491/'], '@type': ['Target', 'Item'], 'name': 'nhr-71-celegans', 'label': 'nhr-71', '@id': '/targets/nhr-71-celegans/', 'title': 'nhr-71 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bd8fe99a-fdc3-4b45-9b3e-4e3f137a5746', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF814KZP/ 9999325 Kevin White, UChicago 97d60cbeda6f337b0711a16c4cbf8d3a https://www.encodeproject.org/files/ENCFF490QOM/@@download/ENCFF490QOM.bigWig released s3://encode-public/2016/02/03/289ab214-65b8-41f9-abce-ae310ceecaa7/ENCFF490QOM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF877SED bigWig bigWig read-depth normalized signal ce11 ENCSR942UFE Control ChIP-seq /worm-donors/ENCDO628CNU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181491/'], '@type': ['Target', 'Item'], 'name': 'nhr-71-celegans', 'label': 'nhr-71', '@id': '/targets/nhr-71-celegans/', 'title': 'nhr-71 (Caenorhabditis elegans)', 'investigated_as': ['transcription 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bam alignments hg19 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 1054569421 Peggy Farnham, USC b9c87ec1e94f7a626f64e241eaef0280 https://www.encodeproject.org/files/ENCFF000VGO/@@download/ENCFF000VGO.bam archived s3://encode-public/2011/03/22/9827981e-3b61-4ca7-9eee-6741e9703f38/ENCFF000VGO.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000VGP bigWig bigWig signal hg19 ENCSR000EWW Control ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 415466686 Peggy Farnham, USC 28127f15e2564c9fbece2adfa80f4394 https://www.encodeproject.org/files/ENCFF000VGP/@@download/ENCFF000VGP.bigWig archived s3://encode-public/2011/03/22/32010cd2-4ea9-4c92-b28c-50aac087ee88/ENCFF000VGP.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000VHL fastq fastq reads ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 single-ended 603320239 Peggy Farnham, USC 6c8e3473748ba112edb5e9feb4f8ea12 https://www.encodeproject.org/files/ENCFF000VHL/@@download/ENCFF000VHL.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/7fbcfa02-7ae8-4ad5-8329-49bca668921f/ENCFF000VHL.fastq.gz low read depth insufficient read length ENCFF000VHM fastq fastq reads ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 single-ended 814199476 Peggy Farnham, USC 5b2dc415c27309b92ab4eeae951e07c4 https://www.encodeproject.org/files/ENCFF000VHM/@@download/ENCFF000VHM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/3a624949-fee5-4684-b6d4-759a7cdb0742/ENCFF000VHM.fastq.gz low read depth insufficient read length ENCFF846QOW bam bam unfiltered alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHM/ 1059797960 ENCODE Processing Pipeline 7f5d526e703d32b9a08aaa6246cba9e6 https://www.encodeproject.org/files/ENCFF846QOW/@@download/ENCFF846QOW.bam released s3://encode-public/2016/07/13/c845bd2b-7d67-435f-b61f-6a6df397f70b/ENCFF846QOW.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF791WJU bam bam unfiltered alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHL/ 813365181 ENCODE Processing Pipeline a8ba45e608f2bb6091c15e4c3f8e4023 https://www.encodeproject.org/files/ENCFF791WJU/@@download/ENCFF791WJU.bam released s3://encode-public/2016/07/13/971b3554-4a6e-4704-99b5-1889841c7b4c/ENCFF791WJU.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF076CJL bam bam alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHL/ 455934028 ENCODE Processing Pipeline d7b244c97b83848ae21d6fabd8cf08bd https://www.encodeproject.org/files/ENCFF076CJL/@@download/ENCFF076CJL.bam released s3://encode-public/2016/07/13/a5373a5d-51f3-46ae-8659-1c16c85096ce/ENCFF076CJL.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF839GWH bam bam alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHM/ 576822736 ENCODE Processing Pipeline 138e35fd0e84c04f0d8bfc4bab413ed6 https://www.encodeproject.org/files/ENCFF839GWH/@@download/ENCFF839GWH.bam released s3://encode-public/2016/07/13/6dd20b3a-5dea-4e49-8521-c0da38c53de9/ENCFF839GWH.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF891EBF bam bam unfiltered alignments hg19 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF807MUK/, /files/ENCFF000VHL/ 810880817 ENCODE Processing Pipeline daa0c5ebec1a483ff66dc735ddfd4323 https://www.encodeproject.org/files/ENCFF891EBF/@@download/ENCFF891EBF.bam released s3://encode-public/2016/11/13/41dfa4d4-dc3c-4a4d-9b7c-edc6dca7085d/ENCFF891EBF.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF610RHP bam bam unfiltered alignments hg19 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF807MUK/, /files/ENCFF000VHM/ 1055811769 ENCODE Processing Pipeline 0802096d9209df6393f74df8b9603a3d https://www.encodeproject.org/files/ENCFF610RHP/@@download/ENCFF610RHP.bam released s3://encode-public/2016/11/13/fc827c8d-0ef6-4bf1-8081-f1577e2ab9a7/ENCFF610RHP.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF162ZAB bam bam alignments hg19 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF807MUK/, /files/ENCFF000VHL/ 456336672 ENCODE Processing Pipeline f462c2ab0748a4a7168ae674bb0bd8fd https://www.encodeproject.org/files/ENCFF162ZAB/@@download/ENCFF162ZAB.bam released s3://encode-public/2016/11/13/22830be4-0a70-4d87-af79-ef82bb52ed98/ENCFF162ZAB.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF166QBJ bam bam alignments hg19 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF807MUK/, /files/ENCFF000VHM/ 577321485 ENCODE Processing Pipeline eb0e552462b69636999fe00a5362e434 https://www.encodeproject.org/files/ENCFF166QBJ/@@download/ENCFF166QBJ.bam released s3://encode-public/2016/11/13/feaa4177-3cbe-40df-ae53-c6b9c9d86832/ENCFF166QBJ.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF491NFT bam bam alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHM/ 576822774 ENCODE Processing Pipeline 891243546e67d0c9c825c6642b18a1f7 https://www.encodeproject.org/files/ENCFF491NFT/@@download/ENCFF491NFT.bam released s3://encode-public/2020/02/18/08e79f46-2da0-4204-9209-c19b54c316a3/ENCFF491NFT.bam low read depth insufficient read length ENCFF347RLI bam bam unfiltered alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHM/ 1059798000 ENCODE Processing Pipeline 7506092c8323c62bdf1a1cb1a8e48d66 https://www.encodeproject.org/files/ENCFF347RLI/@@download/ENCFF347RLI.bam released s3://encode-public/2020/02/18/686af168-7d8e-43c1-8f17-5b5ea6d0fab5/ENCFF347RLI.bam low read depth insufficient read length ENCFF621BCB bam bam unfiltered alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHL/ 813365220 ENCODE Processing Pipeline 32594ec5c2f5bc466e990b32fd6d9df7 https://www.encodeproject.org/files/ENCFF621BCB/@@download/ENCFF621BCB.bam released s3://encode-public/2020/02/18/5f3a000b-f3d0-4015-93f8-b67850fe5163/ENCFF621BCB.bam low read depth insufficient read length ENCFF772YZF bam bam alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000VHL/ 455934066 ENCODE Processing Pipeline c695754d31b603a885d8897d942fb0d1 https://www.encodeproject.org/files/ENCFF772YZF/@@download/ENCFF772YZF.bam released s3://encode-public/2020/02/18/ccd49a2e-7dc7-4cad-a880-e50d644eb952/ENCFF772YZF.bam low read depth insufficient read length ENCFF089TGH bam bam unfiltered alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF110MCL/, /files/ENCFF000VHM/ 1027681346 ENCODE Processing Pipeline 3cc4f629a77fea55082f63bf9f9a0ca0 https://www.encodeproject.org/files/ENCFF089TGH/@@download/ENCFF089TGH.bam released s3://encode-public/2020/09/03/7aa4e328-de24-46d2-b446-8c9303e922b2/ENCFF089TGH.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF856CKL bam bam unfiltered alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000VHL/ 792766610 ENCODE Processing Pipeline 434a36893e74fc2c181370ae6c8f5c71 https://www.encodeproject.org/files/ENCFF856CKL/@@download/ENCFF856CKL.bam released s3://encode-public/2020/09/03/661c8640-019a-46f9-bbbc-aab1b351ec25/ENCFF856CKL.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF506VER bam bam alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000VHL/ 475134314 ENCODE Processing Pipeline 7fdba25d502c2682edbef4fc60fe6052 https://www.encodeproject.org/files/ENCFF506VER/@@download/ENCFF506VER.bam released s3://encode-public/2020/09/03/289dc49e-abad-4572-9d46-46fe41c4778e/ENCFF506VER.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF238STO bam bam alignments GRCh38 ENCSR000EWW Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 32 /files/ENCFF110MCL/, /files/ENCFF000VHM/ 584676431 ENCODE Processing Pipeline 779c0cacbb5b7b8ab4511e8fd05d821a https://www.encodeproject.org/files/ENCFF238STO/@@download/ENCFF238STO.bam released s3://encode-public/2020/09/03/ea8e622c-bbd5-49a2-8fa8-61062d416810/ENCFF238STO.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF000XFN bigWig bigWig signal hg19 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 /files/ENCFF000XFO/ 468119611 Michael Snyder, Stanford 0c54248a36310a7ebe32943f76a07139 https://www.encodeproject.org/files/ENCFF000XFN/@@download/ENCFF000XFN.bigWig archived s3://encode-public/2012/07/01/9d902ad8-b1ed-4b5e-b041-1cf6cd387135/ENCFF000XFN.bigWig Lab custom hg19 archived insufficient read length ENCFF000XFO bam bam alignments hg19 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XKW/ 2247398514 Michael Snyder, Stanford 52ec8cd51857834a34e1e011a7e954af https://www.encodeproject.org/files/ENCFF000XFO/@@download/ENCFF000XFO.bam archived s3://encode-public/2012/07/01/445f5d25-4197-4439-8356-76f630404ea9/ENCFF000XFO.bam Lab custom hg19 archived insufficient read length ENCFF000XKW fastq fastq reads ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 single-ended 1640854431 Michael Snyder, Stanford b81c18fadb8c64a1bd5a86b7d42f41d8 https://www.encodeproject.org/files/ENCFF000XKW/@@download/ENCFF000XKW.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/ce51040c-d771-4033-a0a2-de0eb2d50505/ENCFF000XKW.fastq.gz insufficient read length ENCFF469INX bam bam alignments hg19 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XKW/, /files/ENCFF807MUK/ 1166007561 ENCODE Processing Pipeline 1143de2f5b700da07d9d4b848ea28601 https://www.encodeproject.org/files/ENCFF469INX/@@download/ENCFF469INX.bam released s3://encode-public/2016/08/23/2d9a9f78-5c98-4581-a942-05b876a6c472/ENCFF469INX.bam ENCODE3 hg19 archived insufficient read length ENCFF565WKC bam bam unfiltered alignments hg19 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XKW/, /files/ENCFF807MUK/ 2250329380 ENCODE Processing Pipeline 09893c767e09115575c2d111d84da615 https://www.encodeproject.org/files/ENCFF565WKC/@@download/ENCFF565WKC.bam released s3://encode-public/2016/08/23/bff64a05-2362-49ed-8589-209664993481/ENCFF565WKC.bam ENCODE3 hg19 archived insufficient read length ENCFF276BNG bam bam unfiltered alignments GRCh38 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XKW/, /files/ENCFF643CGH/ 2259455683 ENCODE Processing Pipeline 0690c7a71961ad7d27532191e7e27af5 https://www.encodeproject.org/files/ENCFF276BNG/@@download/ENCFF276BNG.bam released s3://encode-public/2016/10/29/2935b3e2-cff0-43b5-a738-401060d9fdb3/ENCFF276BNG.bam ENCODE3 GRCh38 archived insufficient read length ENCFF436WVQ bam bam alignments GRCh38 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XKW/, /files/ENCFF643CGH/ 1164993164 ENCODE Processing Pipeline 69638b1b3de9b5aa1c430e1441e3c116 https://www.encodeproject.org/files/ENCFF436WVQ/@@download/ENCFF436WVQ.bam released s3://encode-public/2016/10/29/bc6eb4fe-d2d0-4ddb-b63c-d346bf721425/ENCFF436WVQ.bam ENCODE3 GRCh38 archived insufficient read length ENCFF791QEU bam bam unfiltered alignments GRCh38 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XKW/, /files/ENCFF110MCL/ 2140547030 ENCODE Processing Pipeline aa3725f8a773613e13c18934292dce44 https://www.encodeproject.org/files/ENCFF791QEU/@@download/ENCFF791QEU.bam released s3://encode-public/2020/10/27/524ad633-1ea7-4c45-a762-5d53d10bd4d1/ENCFF791QEU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF989ZLF bam bam alignments GRCh38 ENCSR000EDI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XKW/, /files/ENCFF110MCL/ 1099355278 ENCODE Processing Pipeline b944be53964db6a8cadfeebb056cad21 https://www.encodeproject.org/files/ENCFF989ZLF/@@download/ENCFF989ZLF.bam released s3://encode-public/2020/10/27/2cacb3f5-81d0-4359-afa6-dc2a7051e974/ENCFF989ZLF.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF002ARJ fastq fastq reads ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1442956148 Bing Ren, UCSD 563d8c36b213a4a86af5c7c1b82e4bd0 SRA:SRR3653209 https://www.encodeproject.org/files/ENCFF002ARJ/@@download/ENCFF002ARJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/26fc6746-5310-4697-88ef-7a697a5440b0/ENCFF002ARJ.fastq.gz low read depth ENCFF002ARK fastq fastq reads ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1664737173 Bing Ren, UCSD cd51f69408e6b67d80ca646112510039 SRA:SRR3653208 https://www.encodeproject.org/files/ENCFF002ARK/@@download/ENCFF002ARK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/f58fdda4-0f91-4f5b-b31b-2b31ae4a7697/ENCFF002ARK.fastq.gz low read depth ENCFF768EUZ bam bam unfiltered alignments mm10-minimal ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARK/, /files/ENCFF806TVZ/ 1901658419 ENCODE Processing Pipeline e9bcde0c6aefd5222c6554bbe80141cf https://www.encodeproject.org/files/ENCFF768EUZ/@@download/ENCFF768EUZ.bam archived s3://encode-public/2015/02/09/e5b7fab8-0f87-4202-a02c-982649c54429/ENCFF768EUZ.bam low read depth ENCFF190AKR bam bam unfiltered alignments mm10-minimal ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002ARJ/, /files/ENCFF806TVZ/ 1595962157 ENCODE Processing Pipeline d0f10e4fac13655bf5943a9eee820837 https://www.encodeproject.org/files/ENCFF190AKR/@@download/ENCFF190AKR.bam archived s3://encode-public/2015/02/09/7ac99654-d173-4eee-abc5-f2866fd587a1/ENCFF190AKR.bam low read depth ENCFF444YOE bam bam alignments mm10-minimal ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARK/, /files/ENCFF806TVZ/ 1345264086 ENCODE Processing Pipeline 8ea015ccbda7b398f1100bdd4ba3eb5f https://www.encodeproject.org/files/ENCFF444YOE/@@download/ENCFF444YOE.bam archived s3://encode-public/2015/05/23/d79ae10f-585b-4a7b-8f3c-96af17607440/ENCFF444YOE.bam low read depth ENCFF934LFS bam bam alignments mm10-minimal ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002ARJ/, /files/ENCFF806TVZ/ 1123794698 ENCODE Processing Pipeline 5ea231fe1e54b920ef1d4a13413269d0 https://www.encodeproject.org/files/ENCFF934LFS/@@download/ENCFF934LFS.bam archived s3://encode-public/2015/05/23/f790ebea-dbb5-4d20-a914-8d87297a75bf/ENCFF934LFS.bam low read depth ENCFF083GUK bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002ARJ/, /files/ENCFF018NEO/ 1597765082 ENCODE Processing Pipeline b596d69986d5a412c93a34801eca13be https://www.encodeproject.org/files/ENCFF083GUK/@@download/ENCFF083GUK.bam released s3://encode-public/2016/05/20/52c2edd9-f1e6-419a-94af-2b76bd4c765f/ENCFF083GUK.bam ENCODE3 mm10 archived low read depth ENCFF405WIZ bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARK/ 1903989066 ENCODE Processing Pipeline 8596f7c796f2fae1c246efd937313224 https://www.encodeproject.org/files/ENCFF405WIZ/@@download/ENCFF405WIZ.bam released s3://encode-public/2016/05/20/77f8f3e6-1639-4930-839c-7805cde7497f/ENCFF405WIZ.bam ENCODE3 mm10 archived low read depth ENCFF510NJP bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002ARJ/, /files/ENCFF018NEO/ 1123455422 ENCODE Processing Pipeline 48d28dc154e47476cec71c0a5aac77d4 https://www.encodeproject.org/files/ENCFF510NJP/@@download/ENCFF510NJP.bam released s3://encode-public/2016/05/20/b32f292e-83b0-49d2-bcf2-f0983bf23de1/ENCFF510NJP.bam ENCODE3 mm10 archived low read depth ENCFF879KSR bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARK/ 1344867889 ENCODE Processing Pipeline 5175d03459a4b8898202854f3d2df4dc https://www.encodeproject.org/files/ENCFF879KSR/@@download/ENCFF879KSR.bam released s3://encode-public/2016/05/20/81e96139-96f6-458e-8310-a6613657ab8c/ENCFF879KSR.bam ENCODE3 mm10 archived low read depth ENCFF836LLS bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARJ/, /files/ENCFF018NEO/ 1307804304 ENCODE Processing Pipeline c3b86561a4a3eb6181e3d56e9b062ea0 https://www.encodeproject.org/files/ENCFF836LLS/@@download/ENCFF836LLS.bam released s3://encode-public/2016/10/03/77d65067-852f-4f50-8411-2c07e06faff9/ENCFF836LLS.bam ENCODE3 mm10 archived low read depth ENCFF829LXO bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARK/ 1549610608 ENCODE Processing Pipeline e98c6cd74009f1f471605f150938f2bc https://www.encodeproject.org/files/ENCFF829LXO/@@download/ENCFF829LXO.bam released s3://encode-public/2016/10/03/ea5e61fb-e48b-4704-99c7-5eb608d119a0/ENCFF829LXO.bam ENCODE3 mm10 archived low read depth ENCFF681SBF bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARK/ 1027285219 ENCODE Processing Pipeline 1cca4fa4acd50e8faa671750c3d18ba3 https://www.encodeproject.org/files/ENCFF681SBF/@@download/ENCFF681SBF.bam released s3://encode-public/2016/10/03/58383b5c-9872-4204-90c5-5c6974dbbe19/ENCFF681SBF.bam ENCODE3 mm10 archived low read depth ENCFF319PHE bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARJ/, /files/ENCFF018NEO/ 859848677 ENCODE Processing Pipeline 83f5ddc47175636817ed553ee7e20bfc https://www.encodeproject.org/files/ENCFF319PHE/@@download/ENCFF319PHE.bam released s3://encode-public/2016/10/03/d898ca72-ffd4-4a45-b410-8d7b731b89c0/ENCFF319PHE.bam ENCODE3 mm10 archived low read depth ENCFF074AIB bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARK/, /files/ENCFF309GLL/ 1871575862 ENCODE Processing Pipeline d2646ba3d3dc41566b474d9afa4d7f8f https://www.encodeproject.org/files/ENCFF074AIB/@@download/ENCFF074AIB.bam released s3://encode-public/2020/10/07/c9fca737-15fe-4718-9ce0-2fc51162e81b/ENCFF074AIB.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF797EFV bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARK/, /files/ENCFF309GLL/ 1403407584 ENCODE Processing Pipeline 3e8c5cc7985d4bd926dbe51778e7b400 https://www.encodeproject.org/files/ENCFF797EFV/@@download/ENCFF797EFV.bam released s3://encode-public/2020/10/07/03ec701f-202c-4b18-a4c0-a5116214518c/ENCFF797EFV.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF466UWZ bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002ARJ/, /files/ENCFF309GLL/ 1158743309 ENCODE Processing Pipeline d411820ccc19fd5654552f25fae091fc https://www.encodeproject.org/files/ENCFF466UWZ/@@download/ENCFF466UWZ.bam released s3://encode-public/2020/10/07/aae3ca5f-bab6-4352-ab7a-620ea3345b50/ENCFF466UWZ.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF047FUP bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002ARK/, /files/ENCFF309GLL/ 1511061684 ENCODE Processing Pipeline 3f25e7778494c8f48f770552e42827ab https://www.encodeproject.org/files/ENCFF047FUP/@@download/ENCFF047FUP.bam released s3://encode-public/2020/10/10/776d0a5b-0ec1-4038-93ba-e1a5b001e054/ENCFF047FUP.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF460MFT bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002ARK/, /files/ENCFF309GLL/ 1106787770 ENCODE Processing Pipeline 568a44734f06091bbe064c08ad5b576a https://www.encodeproject.org/files/ENCFF460MFT/@@download/ENCFF460MFT.bam released s3://encode-public/2020/10/10/4fc20861-6bd3-4151-8d30-164b687c4e4d/ENCFF460MFT.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF644AXU bam bam alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARJ/, /files/ENCFF309GLL/ 924119302 ENCODE Processing Pipeline 446501b4c42e0c478ce7ee7deef32956 https://www.encodeproject.org/files/ENCFF644AXU/@@download/ENCFF644AXU.bam released s3://encode-public/2020/10/10/a7c3b967-212d-4121-b1f1-f46767d71e2e/ENCFF644AXU.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF524JJE bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002ARJ/, /files/ENCFF309GLL/ 1586242114 ENCODE Processing Pipeline 7f918b2b2c7345908be57ffe7266837b https://www.encodeproject.org/files/ENCFF524JJE/@@download/ENCFF524JJE.bam released s3://encode-public/2020/10/07/3d6adf5a-223f-4023-8082-8a354379a364/ENCFF524JJE.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF102GIN bam bam unfiltered alignments mm10 ENCSR889XXJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARJ/, /files/ENCFF309GLL/ 1277978000 ENCODE Processing Pipeline ff96af074f23307b6a29f86ca24fbe9c https://www.encodeproject.org/files/ENCFF102GIN/@@download/ENCFF102GIN.bam released s3://encode-public/2020/10/10/a1f9b52d-6c0a-4a4f-9337-6ee51ae9d538/ENCFF102GIN.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF002AQV fastq fastq reads ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1737032247 Bing Ren, UCSD 1cc26345b6aef787f3cf5963a6bd63da SRA:SRR3653229 https://www.encodeproject.org/files/ENCFF002AQV/@@download/ENCFF002AQV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/3d7d8441-dcbd-41e7-a439-3579c55e86ff/ENCFF002AQV.fastq.gz ENCFF002AQZ fastq fastq reads ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1872897513 Bing Ren, UCSD 1836eaeee5149ebb0650b1187faec520 SRA:SRR3653230 https://www.encodeproject.org/files/ENCFF002AQZ/@@download/ENCFF002AQZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/f9edf283-7acf-42d1-81b9-5d8bf6ce1d1b/ENCFF002AQZ.fastq.gz ENCFF981GHP bam bam unfiltered alignments mm10-minimal ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQV/ 1919165405 ENCODE Processing Pipeline c0e5994ae93232f877d3f142f8874e5e https://www.encodeproject.org/files/ENCFF981GHP/@@download/ENCFF981GHP.bam archived s3://encode-public/2015/02/09/d9ea2403-04eb-4cce-b072-43e6d38894d2/ENCFF981GHP.bam ENCFF605WGY bam bam unfiltered alignments mm10-minimal ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQZ/, /files/ENCFF806TVZ/ 2135626081 ENCODE Processing Pipeline aae05257c771ce6142899c251c7344b4 https://www.encodeproject.org/files/ENCFF605WGY/@@download/ENCFF605WGY.bam archived s3://encode-public/2015/02/09/e11ede97-6c64-4bf3-8f13-5dcae6e21ed1/ENCFF605WGY.bam ENCFF238GCZ bam bam alignments mm10-minimal ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQZ/, /files/ENCFF806TVZ/ 1507358846 ENCODE Processing Pipeline 50ba9a36e1732d762477151fac29997d https://www.encodeproject.org/files/ENCFF238GCZ/@@download/ENCFF238GCZ.bam archived s3://encode-public/2015/03/06/c144aa41-a4b3-4863-be9d-bc0ae0d96644/ENCFF238GCZ.bam ENCFF967HVB bam bam alignments mm10-minimal ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQV/ 1386489583 ENCODE Processing Pipeline abead427cd24fe5433d831f682a6041c https://www.encodeproject.org/files/ENCFF967HVB/@@download/ENCFF967HVB.bam archived s3://encode-public/2015/03/06/35ea4261-2c77-46d7-8aa1-ba7e3b80522e/ENCFF967HVB.bam ENCFF780UIU bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQZ/ 2138287555 ENCODE Processing Pipeline b5daff70f8f3a6552077bae417bac6aa https://www.encodeproject.org/files/ENCFF780UIU/@@download/ENCFF780UIU.bam released s3://encode-public/2016/05/20/4d71c710-53ba-489f-9b16-52fd275acce7/ENCFF780UIU.bam ENCODE3 mm10 archived ENCFF769EYB bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQV/ 1920981934 ENCODE Processing Pipeline fb659df7cac64d2ed17d20495061db31 https://www.encodeproject.org/files/ENCFF769EYB/@@download/ENCFF769EYB.bam released s3://encode-public/2016/05/20/0e337655-1778-426b-b7f7-ce18d6c8fb25/ENCFF769EYB.bam ENCODE3 mm10 archived ENCFF331CEU bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQZ/ 1506915431 ENCODE Processing Pipeline dc616e2da38bfeb6d17c535f31bdd6a7 https://www.encodeproject.org/files/ENCFF331CEU/@@download/ENCFF331CEU.bam released s3://encode-public/2016/05/20/1da9489d-5743-4959-b538-5b5dd836e665/ENCFF331CEU.bam ENCODE3 mm10 archived ENCFF508LNS bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQV/ 1386134453 ENCODE Processing Pipeline daa1a453a8e7dbee43841475e9392231 https://www.encodeproject.org/files/ENCFF508LNS/@@download/ENCFF508LNS.bam released s3://encode-public/2016/05/20/4331ba2e-dd82-4944-9dc9-ef49f84c3858/ENCFF508LNS.bam ENCODE3 mm10 archived ENCFF905GQV bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQZ/ 1740565874 ENCODE Processing Pipeline 3ebb44204a3324322434a8218232c355 https://www.encodeproject.org/files/ENCFF905GQV/@@download/ENCFF905GQV.bam released s3://encode-public/2016/10/03/dd56a17f-52ce-401e-aed7-951a42f5223b/ENCFF905GQV.bam ENCODE3 mm10 archived ENCFF217DJK bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQV/ 1574254110 ENCODE Processing Pipeline a08ad5a68c5afed5ea3f606931f2bac3 https://www.encodeproject.org/files/ENCFF217DJK/@@download/ENCFF217DJK.bam released s3://encode-public/2016/10/03/f7e1241e-993d-451e-960e-c95b08e1a7d9/ENCFF217DJK.bam ENCODE3 mm10 archived ENCFF507BQX bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQZ/ 1151706873 ENCODE Processing Pipeline e48c3bca614481345c07a638bab5fc52 https://www.encodeproject.org/files/ENCFF507BQX/@@download/ENCFF507BQX.bam released s3://encode-public/2016/10/03/7ae86c52-ee18-468b-a1c9-aefef35c66da/ENCFF507BQX.bam ENCODE3 mm10 archived ENCFF858PPY bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQV/ 1062179944 ENCODE Processing Pipeline 2b40158431c1691da830477b85cabb3e https://www.encodeproject.org/files/ENCFF858PPY/@@download/ENCFF858PPY.bam released s3://encode-public/2016/10/03/8b688cc3-e762-42bd-ab21-34d92bda3199/ENCFF858PPY.bam ENCODE3 mm10 archived ENCFF894TOB bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQZ/ 1572158863 ENCODE Processing Pipeline 1ce5c46439f7f84e62079a366edadabc https://www.encodeproject.org/files/ENCFF894TOB/@@download/ENCFF894TOB.bam released s3://encode-public/2020/10/07/6f5f927c-ac68-4fd8-a2b6-cd2c129982e6/ENCFF894TOB.bam ENCODE4 v1.5.1 mm10 released ENCFF883CYA bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQZ/ 2101988861 ENCODE Processing Pipeline fd46897436d6175bb81c074d5f77facd https://www.encodeproject.org/files/ENCFF883CYA/@@download/ENCFF883CYA.bam released s3://encode-public/2020/10/07/d8108908-5b47-450a-9f97-a2d407c9e5be/ENCFF883CYA.bam ENCODE4 v1.5.1 mm10 released ENCFF940IKA bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQZ/, /files/ENCFF309GLL/ 1240771210 ENCODE Processing Pipeline 775d51c710d67726952cb6ef26c49d5d https://www.encodeproject.org/files/ENCFF940IKA/@@download/ENCFF940IKA.bam released s3://encode-public/2020/10/10/f51e5ff0-e85c-41b1-8603-58655a262c07/ENCFF940IKA.bam ENCODE4 v1.5.1 mm10 released ENCFF341CFZ bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQV/ 1907763875 ENCODE Processing Pipeline d8f077ae968202d1944e62dddc14f34f https://www.encodeproject.org/files/ENCFF341CFZ/@@download/ENCFF341CFZ.bam released s3://encode-public/2020/10/07/6c5750be-41b1-4c68-bd15-b2aed5f7061c/ENCFF341CFZ.bam ENCODE4 v1.5.1 mm10 released ENCFF106EAL bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQV/ 1427462169 ENCODE Processing Pipeline 9b1b7a12b8b3a85d05781f663ebcae84 https://www.encodeproject.org/files/ENCFF106EAL/@@download/ENCFF106EAL.bam released s3://encode-public/2020/10/07/1c7caeb2-0888-4cea-a848-0756fbd3d02c/ENCFF106EAL.bam ENCODE4 v1.5.1 mm10 released ENCFF790JSU bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQZ/, /files/ENCFF309GLL/ 1697132695 ENCODE Processing Pipeline 5f467de6034f860bbf0d7a39536fe219 https://www.encodeproject.org/files/ENCFF790JSU/@@download/ENCFF790JSU.bam released s3://encode-public/2020/10/10/5b93e183-ed6d-4dce-80fb-d115d212bc5f/ENCFF790JSU.bam ENCODE4 v1.5.1 mm10 released ENCFF836BKH bam bam unfiltered alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQV/, /files/ENCFF309GLL/ 1538824289 ENCODE Processing Pipeline c49f384dc3a03a0401bbf7a34f67cd76 https://www.encodeproject.org/files/ENCFF836BKH/@@download/ENCFF836BKH.bam released s3://encode-public/2020/10/10/f9f09885-a77d-4323-8d70-e2a15941ef60/ENCFF836BKH.bam ENCODE4 v1.5.1 mm10 released ENCFF023NVA bam bam alignments mm10 ENCSR898PML Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQV/, /files/ENCFF309GLL/ 1140309252 ENCODE Processing Pipeline 55efc0a3069da74ea6cd971b7d146a4d https://www.encodeproject.org/files/ENCFF023NVA/@@download/ENCFF023NVA.bam released s3://encode-public/2020/10/10/2189574b-2ab3-4393-83e2-180b5fbeefe8/ENCFF023NVA.bam ENCODE4 v1.5.1 mm10 released ENCFF441GKD bam bam unfiltered alignments hg19 ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 /files/ENCFF002BFY/, /files/ENCFF807MUK/ 2392609629 ENCODE Processing Pipeline 97f6ea50af0fb50baf7f99d07835c61d https://www.encodeproject.org/files/ENCFF441GKD/@@download/ENCFF441GKD.bam released s3://encode-public/2018/02/27/8bab19e1-8c41-4bbe-9adc-b8c23158967d/ENCFF441GKD.bam ENCODE3 hg19 archived ENCFF304NXG bam bam alignments hg19 ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 /files/ENCFF002BFY/, /files/ENCFF807MUK/ 1693246357 ENCODE Processing Pipeline aed9bd52ff5d5b1c9390fa09a4fbc6ba https://www.encodeproject.org/files/ENCFF304NXG/@@download/ENCFF304NXG.bam released s3://encode-public/2018/02/27/2fad5a63-587d-4e60-88a2-3930a34f1b1d/ENCFF304NXG.bam ENCODE3 hg19 archived ENCFF002BFY fastq fastq reads ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 single-ended 2249816484 Richard Myers, HAIB 3ebb58d539f99d65f3c0d360dce98a0d SRA:SRR5339101 https://www.encodeproject.org/files/ENCFF002BFY/@@download/ENCFF002BFY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/04/04/e3a52eb2-125f-49bd-a00a-c5b529a59ada/ENCFF002BFY.fastq.gz ENCFF356JMK bam bam alignments hg19 ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 /files/ENCFF002BFY/, /files/ENCFF807MUK/ 1693246328 ENCODE Processing Pipeline 3d6cf097fb689e5c7c226745e29f0f41 https://www.encodeproject.org/files/ENCFF356JMK/@@download/ENCFF356JMK.bam archived s3://encode-public/2015/10/28/4572a08f-84e9-481f-ab20-da644e6973a1/ENCFF356JMK.bam ENCODE3 hg19 archived ENCFF104HQV bam bam unfiltered alignments GRCh38 ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 /files/ENCFF002BFY/, /files/ENCFF643CGH/ 2399318640 ENCODE Processing Pipeline 10a94b0557b4ca996d4d86e4e77135be https://www.encodeproject.org/files/ENCFF104HQV/@@download/ENCFF104HQV.bam released s3://encode-public/2016/05/06/119e1497-557b-4b51-a48b-4d12a710b978/ENCFF104HQV.bam ENCODE3 GRCh38 archived ENCFF103VPA bam bam alignments GRCh38 ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 /files/ENCFF002BFY/, /files/ENCFF643CGH/ 1693532281 ENCODE Processing Pipeline e90034bd7473532360f3f91c3625d96d https://www.encodeproject.org/files/ENCFF103VPA/@@download/ENCFF103VPA.bam released s3://encode-public/2016/05/06/4346cb76-419e-4b57-95ab-9a8e1a9fed80/ENCFF103VPA.bam ENCODE3 GRCh38 archived ENCFF651LRC bam bam unfiltered alignments GRCh38 ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 /files/ENCFF110MCL/, /files/ENCFF002BFY/ 2407720760 ENCODE Processing Pipeline e28be56022edcaf55020949bca105582 https://www.encodeproject.org/files/ENCFF651LRC/@@download/ENCFF651LRC.bam released s3://encode-public/2020/06/06/82cff55c-c035-4777-af7f-e3d8f6a80c68/ENCFF651LRC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF824FNN bam bam alignments GRCh38 ENCSR649FPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-04-04 ENCODE see document 5 5_1 50 /files/ENCFF110MCL/, /files/ENCFF002BFY/ 1735888385 ENCODE Processing Pipeline 85b48394326e36e785bac844adda3e9c https://www.encodeproject.org/files/ENCFF824FNN/@@download/ENCFF824FNN.bam released s3://encode-public/2020/06/06/046af82d-bf55-4b2c-a104-880e54c03ab5/ENCFF824FNN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF001NCF fastq fastq reads ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 36 single-ended 535747468 Michael Snyder, Stanford d4cdd8f97528fb69155dde7cdfe864a5 SRA:SRR5210709 https://www.encodeproject.org/files/ENCFF001NCF/@@download/ENCFF001NCF.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/15/894af814-38f4-43f3-9a2b-9656adbc3f9c/ENCFF001NCF.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NCK bigWig bigWig signal mm9 ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 /files/ENCFF001NUD/ 163279050 Michael Snyder, Stanford 3597b1f9623158630268c2e813efe0d9 https://www.encodeproject.org/files/ENCFF001NCK/@@download/ENCFF001NCK.bigWig archived s3://encode-public/2013/04/18/4d71d101-06ae-44ba-9f60-cbd1f3b5c970/ENCFF001NCK.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NUD bam bam alignments mm9 ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 27 /files/ENCFF001NCF/ 443023712 Michael Snyder, Stanford 36ebfe93d477cea2001713f91427e815 https://www.encodeproject.org/files/ENCFF001NUD/@@download/ENCFF001NUD.bam archived s3://encode-public/2012/08/01/af1004b4-bb2b-4f8b-8678-01909a41d6f9/ENCFF001NUD.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NUE bigWig bigWig signal mm9 ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 /files/ENCFF001NUD/ 150729953 Michael Snyder, Stanford 032226dd65ad1b4ced74620fe8090b58 https://www.encodeproject.org/files/ENCFF001NUE/@@download/ENCFF001NUE.bigWig archived s3://encode-public/2012/08/01/7e19c5c6-3ff2-40d7-9577-0fb0a6a2480e/ENCFF001NUE.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NCH fastq fastq reads ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_2 36 single-ended 777316151 Michael Snyder, Stanford 045d4eec0f9d5e1d05bf178894e58048 SRA:SRR5210708 https://www.encodeproject.org/files/ENCFF001NCH/@@download/ENCFF001NCH.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2013/04/18/04ab2c0b-b166-474a-a756-038a53fc905d/ENCFF001NCH.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF578PKM bam bam unfiltered alignments mm10 ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1, 1_2 36 /files/ENCFF018NEO/, /files/ENCFF001NCH/, /files/ENCFF001NCF/ 1406132452 ENCODE Processing Pipeline 37ead025efc08cec29cfbf1ca580dc02 https://www.encodeproject.org/files/ENCFF578PKM/@@download/ENCFF578PKM.bam released s3://encode-public/2016/10/26/3df93d5c-52bb-4b05-9c7d-5ade2020392b/ENCFF578PKM.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF171OVT bam bam alignments mm10 ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1, 1_2 36 /files/ENCFF018NEO/, /files/ENCFF001NCH/, /files/ENCFF001NCF/ 705826066 ENCODE Processing Pipeline 8be0e3299a0e36b3534b8484041bd382 https://www.encodeproject.org/files/ENCFF171OVT/@@download/ENCFF171OVT.bam released s3://encode-public/2016/10/26/0f981f3f-8ee4-4142-94a9-7fad43ae80d4/ENCFF171OVT.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF448IEP bam bam unfiltered alignments mm10 ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1, 1_2 36 /files/ENCFF001NCF/, /files/ENCFF309GLL/, /files/ENCFF001NCH/ 1388791311 ENCODE Processing Pipeline 6dd7d23d72eb705536f284de4278958e https://www.encodeproject.org/files/ENCFF448IEP/@@download/ENCFF448IEP.bam released s3://encode-public/2020/10/12/34c5c4c5-e19e-4219-afb7-1c447ad65209/ENCFF448IEP.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF797CGV bam bam alignments mm10 ENCSR000ADN Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1, 1_2 36 /files/ENCFF001NCF/, /files/ENCFF309GLL/, /files/ENCFF001NCH/ 748457524 ENCODE Processing Pipeline c419debde9575772cd27547ef3c11e78 https://www.encodeproject.org/files/ENCFF797CGV/@@download/ENCFF797CGV.bam released s3://encode-public/2020/10/12/56d601b9-4392-40fc-8c11-7a97939dd89d/ENCFF797CGV.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001MUQ bam bam alignments mm9 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 /files/ENCFF001MUT/ 1343896178 Ross Hardison, PennState 1f597fa1055753484263dc9fff39fce4 https://www.encodeproject.org/files/ENCFF001MUQ/@@download/ENCFF001MUQ.bam archived s3://encode-public/2011/11/05/42c5e7c0-885f-49f7-a3bd-4e7b3f59f26d/ENCFF001MUQ.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MUR bam bam alignments mm9 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF001MUW/ 7507625198 Ross Hardison, PennState 164e2dac031e12d0a4134e8048789385 https://www.encodeproject.org/files/ENCFF001MUR/@@download/ENCFF001MUR.bam archived s3://encode-public/2011/11/05/17551e7f-3750-4872-9aec-7371c752a5fc/ENCFF001MUR.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MUS bigWig bigWig signal mm9 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 1951475277 Ross Hardison, PennState 782b3673b4f75b9597a64e4ff899a92f https://www.encodeproject.org/files/ENCFF001MUS/@@download/ENCFF001MUS.bigWig archived s3://encode-public/2011/11/05/2468d342-2eb3-4ddd-a264-ff32886eb38e/ENCFF001MUS.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MUT fastq fastq reads ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 single-ended 1044749420 Ross Hardison, PennState 86a25a8980dfafd542c3bdd241c3d30a https://www.encodeproject.org/files/ENCFF001MUT/@@download/ENCFF001MUT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2011/11/05/ee6f20e2-9302-4aa4-ab44-5ce277faba6b/ENCFF001MUT.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MUU bigWig bigWig signal mm9 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 5921511774 Ross Hardison, PennState 3160224d283ca3efbd13a8c72b92c497 https://www.encodeproject.org/files/ENCFF001MUU/@@download/ENCFF001MUU.bigWig archived s3://encode-public/2011/11/05/cf84ba69-5815-4c5e-8449-2493967c4a6f/ENCFF001MUU.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MUV bigWig bigWig signal mm9 ENCSR000DII Control ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 6011085147 Ross Hardison, PennState 74a96128dbf01ef416d1ae4ce193ea13 https://www.encodeproject.org/files/ENCFF001MUV/@@download/ENCFF001MUV.bigWig archived s3://encode-public/2011/11/05/46ae17d8-0fe7-49dc-b86e-63cedd0e1449/ENCFF001MUV.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MUW fastq fastq reads ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 55 single-ended 6364398062 Ross Hardison, PennState 52b4587919fc6c58420410528f462f00 https://www.encodeproject.org/files/ENCFF001MUW/@@download/ENCFF001MUW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/555dd5ca-4a6e-41c8-a0ec-031773ae70c6/ENCFF001MUW.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF726TRO bam bam unfiltered alignments mm10-minimal ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF806TVZ/, /files/ENCFF001MUW/ 7741874545 J. Michael Cherry, Stanford 076fc416a32933bf7fdbe6924e33580d https://www.encodeproject.org/files/ENCFF726TRO/@@download/ENCFF726TRO.bam archived s3://encode-public/2015/02/10/03866c14-0af9-4a93-8aec-2504ee4b48c0/ENCFF726TRO.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF331GZT bam bam unfiltered alignments mm10-minimal ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 /files/ENCFF806TVZ/, /files/ENCFF001MUT/ 1420103424 J. Michael Cherry, Stanford 63521450d1136d5ac4ae7abffd825b16 https://www.encodeproject.org/files/ENCFF331GZT/@@download/ENCFF331GZT.bam archived s3://encode-public/2015/02/10/965c2bf1-3ce4-4d62-9d2d-d1a408413e00/ENCFF331GZT.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF887RWQ bam bam alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MUT/ 1028334062 ENCODE Processing Pipeline e1ac4ce1442f633183f56e13ef0baf15 https://www.encodeproject.org/files/ENCFF887RWQ/@@download/ENCFF887RWQ.bam released s3://encode-public/2016/04/28/d28c1cf9-19b6-4119-9425-033a88fb206f/ENCFF887RWQ.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF163HZJ bam bam unfiltered alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MUT/ 1421571629 ENCODE Processing Pipeline 63cd6bbfa05f43fcf6bb24be9d2c606b https://www.encodeproject.org/files/ENCFF163HZJ/@@download/ENCFF163HZJ.bam released s3://encode-public/2016/07/06/001e8bf9-083f-4622-b9fd-001464bcce14/ENCFF163HZJ.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF784QCS bam bam alignments mm10-minimal ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF806TVZ/, /files/ENCFF001MUW/ 5572539568 ENCODE Processing Pipeline c4fffbb5dd9966587fa45a3f8129ce9d https://www.encodeproject.org/files/ENCFF784QCS/@@download/ENCFF784QCS.bam archived s3://encode-public/2015/05/24/f95a53cf-0e51-431d-82c0-16c930cb9020/ENCFF784QCS.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF768PST bam bam alignments mm10-minimal ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 /files/ENCFF806TVZ/, /files/ENCFF001MUT/ 1028638616 ENCODE Processing Pipeline db10b23dddfbc60dcc8b76da5f1b6b23 https://www.encodeproject.org/files/ENCFF768PST/@@download/ENCFF768PST.bam archived s3://encode-public/2015/05/24/c53471a7-1669-40d3-a252-422605cf8f58/ENCFF768PST.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF769SND bam bam alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 41 /files/ENCFF018NEO/, /files/ENCFF001MUW/ 4802892124 ENCODE Processing Pipeline 7fccbdaf3005803a405ec2967dcfd497 https://www.encodeproject.org/files/ENCFF769SND/@@download/ENCFF769SND.bam released s3://encode-public/2016/11/28/c2bc1579-f60b-4fa7-b81b-0a3b1d97545a/ENCFF769SND.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF788FHZ bam bam unfiltered alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 41 /files/ENCFF018NEO/, /files/ENCFF001MUW/ 6708042987 ENCODE Processing Pipeline 18914fa9a4e28ac0becdf7c23ce8966e https://www.encodeproject.org/files/ENCFF788FHZ/@@download/ENCFF788FHZ.bam released s3://encode-public/2016/11/28/42d7ddc0-540b-41a9-b633-1b7c32999220/ENCFF788FHZ.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF059QJP bam bam unfiltered alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 /files/ENCFF309GLL/, /files/ENCFF001MUT/ 1386099770 ENCODE Processing Pipeline 8c3d7f080e1341b4968b5e7a90bf184b https://www.encodeproject.org/files/ENCFF059QJP/@@download/ENCFF059QJP.bam released s3://encode-public/2020/10/12/0dc45f10-3daf-4851-9541-6d6fdfb05331/ENCFF059QJP.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF743BSA bam bam unfiltered alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 41 /files/ENCFF309GLL/, /files/ENCFF001MUW/ 6647501440 ENCODE Processing Pipeline e73a52f1e326d91ef64f87cbfbbd647c https://www.encodeproject.org/files/ENCFF743BSA/@@download/ENCFF743BSA.bam released s3://encode-public/2020/10/12/2cd06964-7dba-4614-b69a-239c93abbfb0/ENCFF743BSA.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF232VKN bam bam alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 2 2_1 41 /files/ENCFF309GLL/, /files/ENCFF001MUW/ 4950756757 ENCODE Processing Pipeline 21dc6d081203a7dcfa21d18460238156 https://www.encodeproject.org/files/ENCFF232VKN/@@download/ENCFF232VKN.bam released s3://encode-public/2020/10/12/45e580b1-b29f-4495-a120-fe73be46d6c5/ENCFF232VKN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF088GJJ bam bam alignments mm10 ENCSR000DII Control ChIP-seq /mouse-donors/ENCDO083AAA/ CL:0000556 megakaryocyte primary cell Mus musculus DNA 2012-02-13 ENCODE see document 1 1_1 41 /files/ENCFF309GLL/, /files/ENCFF001MUT/ 1024034449 ENCODE Processing Pipeline cea2f8a01d9653db2f8381f7878a8c88 https://www.encodeproject.org/files/ENCFF088GJJ/@@download/ENCFF088GJJ.bam released s3://encode-public/2020/10/12/330018ee-03ad-46d8-a4b1-db8ccbc563f9/ENCFF088GJJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF806YBI fastq fastq reads ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 214989816 Michael Snyder, Stanford d15018beaa7a688179eeb5a065c2a4e3 https://www.encodeproject.org/files/ENCFF806YBI/@@download/ENCFF806YBI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ef07fa79-28ec-4341-9fb2-808762f7e731/ENCFF806YBI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF315JTX fastq fastq reads ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 207582445 Michael Snyder, Stanford 69bfef53f8f95832ffbfe9c7ee797711 https://www.encodeproject.org/files/ENCFF315JTX/@@download/ENCFF315JTX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/5dffddfe-cf27-4492-8a64-352e7f659675/ENCFF315JTX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF677ZGX bam bam alignments ce10 ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF806YBI/, /files/ENCFF315JTX/, /files/ENCFF987UMF/ 549483929 Kevin White, UChicago cf7010941e4cea2ef7efec74a855e4ac https://www.encodeproject.org/files/ENCFF677ZGX/@@download/ENCFF677ZGX.bam released s3://encode-public/2016/10/18/e8d2883a-ccc2-425d-97bb-eff2955c481d/ENCFF677ZGX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF160WPZ bam bam alignments ce11 ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF806YBI/, /files/ENCFF315JTX/, /files/ENCFF586MOL/ 550080990 Kevin White, UChicago cd7f3561277360981ef4296bbb5ea0bd https://www.encodeproject.org/files/ENCFF160WPZ/@@download/ENCFF160WPZ.bam released s3://encode-public/2016/10/19/0e815800-0ebe-4fdd-aa8f-37e2a21f422c/ENCFF160WPZ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF849NJP bigWig bigWig signal of unique reads ce10 ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF677ZGX/ 9986183 Kevin White, UChicago 21aeb0e6ee0bebde0877e712b0da545e https://www.encodeproject.org/files/ENCFF849NJP/@@download/ENCFF849NJP.bigWig released s3://encode-public/2016/10/20/3069d49e-74c3-46fd-8c55-3c6c5f09b997/ENCFF849NJP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF568CMJ bigWig bigWig read-depth normalized signal ce10 ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF677ZGX/ 10014608 Kevin White, UChicago 16bf44909bf57c1b7dc89789323c0263 https://www.encodeproject.org/files/ENCFF568CMJ/@@download/ENCFF568CMJ.bigWig released s3://encode-public/2016/10/20/7ad19255-5a7c-465a-a242-07d6343c140d/ENCFF568CMJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF659INE bigWig bigWig read-depth normalized signal ce11 ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF160WPZ/ 10010128 Kevin White, UChicago 99113fd14c5698fa4b5077f3111a1976 https://www.encodeproject.org/files/ENCFF659INE/@@download/ENCFF659INE.bigWig released s3://encode-public/2016/10/21/d8b39bbc-bb7b-4a0c-84c4-2063d9fc55fa/ENCFF659INE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF947LPS bigWig bigWig signal of unique reads ce11 ENCSR732THT Control ChIP-seq /worm-donors/ENCDO485GYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172251/'], '@type': ['Target', 'Item'], 'name': 'nhr-2-celegans', 'label': 'nhr-2', '@id': '/targets/nhr-2-celegans/', 'title': 'nhr-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4cf1044c-ab4f-4304-9b0f-ed7e15aceac9', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF160WPZ/ 9981933 Kevin White, UChicago 5b19faa0a61fe10965f9925c973f585d https://www.encodeproject.org/files/ENCFF947LPS/@@download/ENCFF947LPS.bigWig released s3://encode-public/2016/10/21/5c6ebf2c-a0d1-4b28-b044-fd9ea356fc1f/ENCFF947LPS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF134ZHE fastq fastq reads ENCSR684GHA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-954'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84969/'], '@type': ['Target', 'Item'], 'name': 'TOX2-human', 'label': 'TOX2', '@id': '/targets/TOX2-human/', 'title': 'TOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '182f37b0-9069-493d-9483-6a4c0a2210ca', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF378FJF/ 2320502677 Michael Snyder, Stanford 4b09546ade48bae765857626ffddb5c2 SRA:SRR14637278 https://www.encodeproject.org/files/ENCFF134ZHE/@@download/ENCFF134ZHE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/e64c93cc-f986-4a83-a65f-a3314ee8484f/ENCFF134ZHE.fastq.gz mild to moderate bottlenecking ENCFF378FJF fastq fastq reads ENCSR684GHA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-954'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84969/'], '@type': ['Target', 'Item'], 'name': 'TOX2-human', 'label': 'TOX2', '@id': '/targets/TOX2-human/', 'title': 'TOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '182f37b0-9069-493d-9483-6a4c0a2210ca', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF134ZHE/ 2452765243 Michael Snyder, Stanford ddb9e5fb892fd892ddfe678b358571ba SRA:SRR14637278 https://www.encodeproject.org/files/ENCFF378FJF/@@download/ENCFF378FJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/b4dccc90-86ac-4e46-8167-4e7baffbe874/ENCFF378FJF.fastq.gz mild to moderate bottlenecking ENCFF209MAB bam bam unfiltered alignments GRCh38 ENCSR684GHA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-954'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84969/'], '@type': ['Target', 'Item'], 'name': 'TOX2-human', 'label': 'TOX2', '@id': '/targets/TOX2-human/', 'title': 'TOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '182f37b0-9069-493d-9483-6a4c0a2210ca', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF134ZHE/, /files/ENCFF378FJF/ 4531571010 ENCODE Processing Pipeline bbfe06deb528d7c180e519ff70fe2f7b https://www.encodeproject.org/files/ENCFF209MAB/@@download/ENCFF209MAB.bam released s3://encode-public/2020/04/21/fea5fb72-33fc-4b9d-8da7-924b7e4aaaae/ENCFF209MAB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF768MQE bam bam alignments GRCh38 ENCSR684GHA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-954'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84969/'], '@type': ['Target', 'Item'], 'name': 'TOX2-human', 'label': 'TOX2', '@id': '/targets/TOX2-human/', 'title': 'TOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '182f37b0-9069-493d-9483-6a4c0a2210ca', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF134ZHE/, /files/ENCFF378FJF/ 3499810543 ENCODE Processing Pipeline 8c008082903dfdbced7959f1068b858a https://www.encodeproject.org/files/ENCFF768MQE/@@download/ENCFF768MQE.bam released s3://encode-public/2020/04/21/18f972fe-d523-43b9-9d33-acfffdd84d0c/ENCFF768MQE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF968TUG fastq fastq reads ENCSR728LLK Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 468673718 Kevin White, UChicago 05cfda073f7cda09fc7e6ee6e334f5dc https://www.encodeproject.org/files/ENCFF968TUG/@@download/ENCFF968TUG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/14ccc12f-ebb4-46e2-b5df-83f655eb18ca/ENCFF968TUG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF247ZBS bam bam alignments dm3 ENCSR728LLK Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF968TUG/ 697171435 Kevin White, UChicago 04a0763bd480e076bccd39f59d4277fb https://www.encodeproject.org/files/ENCFF247ZBS/@@download/ENCFF247ZBS.bam released s3://encode-public/2015/08/05/784c88dd-061d-49af-8028-d0077e71f0c1/ENCFF247ZBS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF487CSR bigWig bigWig read-depth normalized signal dm3 ENCSR728LLK Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF247ZBS/ 15367490 Kevin White, UChicago 0a6902b4fa0de882e0ad5eb07039e9a4 https://www.encodeproject.org/files/ENCFF487CSR/@@download/ENCFF487CSR.bigWig released s3://encode-public/2015/10/05/9d204e3b-3920-4c97-bfc0-194e94345b64/ENCFF487CSR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF409LFB bigWig bigWig signal of unique reads dm3 ENCSR728LLK Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF247ZBS/ 15312553 Kevin White, UChicago 4b84ed065486236085cd8e10f5c63e30 https://www.encodeproject.org/files/ENCFF409LFB/@@download/ENCFF409LFB.bigWig released s3://encode-public/2015/10/05/4eb1e9ba-404e-40e7-b10f-d1cb52dc0179/ENCFF409LFB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF119YLC bam bam alignments dm6 ENCSR728LLK Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF968TUG/ 694042360 Kevin White, UChicago c436fa092f0c29dabedd882a327d6e08 https://www.encodeproject.org/files/ENCFF119YLC/@@download/ENCFF119YLC.bam released s3://encode-public/2016/04/21/9d21dbc5-a862-4ad2-a1e7-60156a72d1ce/ENCFF119YLC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF685OXQ bigWig bigWig signal of unique reads dm6 ENCSR728LLK Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF119YLC/ 17446798 Kevin White, UChicago dbdda4e8c0ce470c469b024073598a21 https://www.encodeproject.org/files/ENCFF685OXQ/@@download/ENCFF685OXQ.bigWig released s3://encode-public/2016/06/20/d4e68e30-d086-4dd0-b1ba-90bc73c4f51a/ENCFF685OXQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF767CGO bigWig bigWig read-depth normalized signal dm6 ENCSR728LLK Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF119YLC/ 17500047 Kevin White, UChicago c782fb269bf55da7b556f1fb7b0399d3 https://www.encodeproject.org/files/ENCFF767CGO/@@download/ENCFF767CGO.bigWig released s3://encode-public/2016/06/20/c54deb65-80fd-4f12-8620-cd9087c3d854/ENCFF767CGO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF145VQF fastq fastq reads ENCSR292LDA Control ChIP-seq /worm-donors/ENCDO439IKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171900/'], '@type': ['Target', 'Item'], 'name': 'zip-4-celegans', 'label': 'zip-4', '@id': '/targets/zip-4-celegans/', 'title': 'zip-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd40ac526-2293-44b6-82a3-c7d1045ebe7a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 646963358 Kevin White, UChicago b3b016739aacd496f55b0a41d1c56c62 https://www.encodeproject.org/files/ENCFF145VQF/@@download/ENCFF145VQF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/78c1776e-3696-4865-858b-dcbf45dc6d3c/ENCFF145VQF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF823GOW bam bam alignments ce11 ENCSR292LDA Control ChIP-seq /worm-donors/ENCDO439IKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171900/'], '@type': ['Target', 'Item'], 'name': 'zip-4-celegans', 'label': 'zip-4', '@id': '/targets/zip-4-celegans/', 'title': 'zip-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd40ac526-2293-44b6-82a3-c7d1045ebe7a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF145VQF/, /files/ENCFF586MOL/ 830167047 Kevin White, UChicago 149a1ee7af0824c3edf27fa5a08c8203 https://www.encodeproject.org/files/ENCFF823GOW/@@download/ENCFF823GOW.bam released s3://encode-public/2018/03/01/3ec7426f-6711-48eb-a1fe-bba9724e7c54/ENCFF823GOW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF764FBI bigWig bigWig signal of unique reads ce11 ENCSR292LDA Control ChIP-seq /worm-donors/ENCDO439IKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171900/'], '@type': ['Target', 'Item'], 'name': 'zip-4-celegans', 'label': 'zip-4', '@id': '/targets/zip-4-celegans/', 'title': 'zip-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd40ac526-2293-44b6-82a3-c7d1045ebe7a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF823GOW/ 9962531 Kevin White, UChicago bada123f9bf27a482198b2ec7ddc5735 https://www.encodeproject.org/files/ENCFF764FBI/@@download/ENCFF764FBI.bigWig released s3://encode-public/2018/03/01/29e0fa0f-6751-47a7-9ec7-dad0acf72d50/ENCFF764FBI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF641EEC bigWig bigWig read-depth normalized signal ce11 ENCSR292LDA Control ChIP-seq /worm-donors/ENCDO439IKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171900/'], '@type': ['Target', 'Item'], 'name': 'zip-4-celegans', 'label': 'zip-4', '@id': '/targets/zip-4-celegans/', 'title': 'zip-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd40ac526-2293-44b6-82a3-c7d1045ebe7a', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF823GOW/ 9960230 Kevin White, UChicago 1fbc10a9103def5f0c02ea08d6538787 https://www.encodeproject.org/files/ENCFF641EEC/@@download/ENCFF641EEC.bigWig released s3://encode-public/2018/03/01/d1f51d0c-a3bb-4ba3-89ed-4b480a874d60/ENCFF641EEC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF779BWN fastq fastq reads ENCSR587BKG Control ChIP-seq /worm-donors/ENCDO172OTW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 815910437 Kevin White, UChicago d32c6dbd475dbf2716c1df7642dfba42 https://www.encodeproject.org/files/ENCFF779BWN/@@download/ENCFF779BWN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/02/26/1af2a949-058c-4c48-8f03-3198d764b6dd/ENCFF779BWN.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF177ABL bam bam alignments ce11 ENCSR587BKG Control ChIP-seq /worm-donors/ENCDO172OTW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF779BWN/, /files/ENCFF586MOL/ 1064137023 Kevin White, UChicago d137d032a167cc0db80da6da7a1d5e64 https://www.encodeproject.org/files/ENCFF177ABL/@@download/ENCFF177ABL.bam released s3://encode-public/2018/02/28/b090c0b8-75d2-44b5-bb64-d464adba343c/ENCFF177ABL.bam Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF872RXQ bigWig bigWig signal of unique reads ce11 ENCSR587BKG Control ChIP-seq /worm-donors/ENCDO172OTW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF177ABL/ 9952442 Kevin White, UChicago 2d29c7f00b35764c1585800c7808775a https://www.encodeproject.org/files/ENCFF872RXQ/@@download/ENCFF872RXQ.bigWig released s3://encode-public/2018/03/01/d62bf212-a6b7-409c-a086-834f32d28580/ENCFF872RXQ.bigWig Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF721VMT bigWig bigWig read-depth normalized signal ce11 ENCSR587BKG Control ChIP-seq /worm-donors/ENCDO172OTW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266837/'], '@type': ['Target', 'Item'], 'name': 'let-607-celegans', 'label': 'let-607', '@id': '/targets/let-607-celegans/', 'title': 'let-607 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6cb7c453-2ed5-4828-801a-93a4409d3588', 'status': 'released'} DNA 2018-03-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF177ABL/ 10000327 Kevin White, UChicago 16139943258392e24b20b2812deb5a55 https://www.encodeproject.org/files/ENCFF721VMT/@@download/ENCFF721VMT.bigWig released s3://encode-public/2018/03/01/7de3900d-3880-4a8a-9697-a0eccc65fdfe/ENCFF721VMT.bigWig Lab custom ce11 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF217BJL fastq fastq reads ENCSR344HOX Control ChIP-seq /fly-donors/ENCDO278QQS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/64875/'], '@type': ['Target', 'Item'], 'name': 'disco-r-dmelanogaster', 'label': 'disco-r', '@id': '/targets/disco-r-dmelanogaster/', 'title': 'disco-r (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9316c2d1-bb59-482c-879e-15887720332f', 'status': 'released'} dm3 X 15976057 16066779 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 608261378 Kevin White, UChicago c92a8ac5c82b4f85b43b546f733a539a https://www.encodeproject.org/files/ENCFF217BJL/@@download/ENCFF217BJL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/54901607-29d2-4a10-a27d-94639f91dd76/ENCFF217BJL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF114FSY bam bam alignments dm3 ENCSR344HOX Control ChIP-seq /fly-donors/ENCDO278QQS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/64875/'], '@type': ['Target', 'Item'], 'name': 'disco-r-dmelanogaster', 'label': 'disco-r', '@id': '/targets/disco-r-dmelanogaster/', 'title': 'disco-r (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9316c2d1-bb59-482c-879e-15887720332f', 'status': 'released'} dm3 X 15976057 16066779 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF217BJL/ 894833076 Kevin White, UChicago 3bd11b6a6fec00b7d8ee9d9c8176dc2c https://www.encodeproject.org/files/ENCFF114FSY/@@download/ENCFF114FSY.bam released s3://encode-public/2015/08/05/c89eff4b-3122-4221-8ee6-9968ad4201b9/ENCFF114FSY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF602KRC bigWig bigWig signal of unique reads dm3 ENCSR344HOX Control ChIP-seq /fly-donors/ENCDO278QQS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/64875/'], '@type': ['Target', 'Item'], 'name': 'disco-r-dmelanogaster', 'label': 'disco-r', '@id': '/targets/disco-r-dmelanogaster/', 'title': 'disco-r (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9316c2d1-bb59-482c-879e-15887720332f', 'status': 'released'} dm3 X 15976057 16066779 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF114FSY/ 15333289 Kevin White, UChicago a470d2aac64af9fbc2c83443032ef835 https://www.encodeproject.org/files/ENCFF602KRC/@@download/ENCFF602KRC.bigWig released s3://encode-public/2015/10/07/9cd19438-c52b-46d7-8c75-715c46762430/ENCFF602KRC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF837PDS bigWig bigWig read-depth normalized signal dm3 ENCSR344HOX Control ChIP-seq /fly-donors/ENCDO278QQS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/64875/'], '@type': ['Target', 'Item'], 'name': 'disco-r-dmelanogaster', 'label': 'disco-r', '@id': '/targets/disco-r-dmelanogaster/', 'title': 'disco-r (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9316c2d1-bb59-482c-879e-15887720332f', 'status': 'released'} dm3 X 15976057 16066779 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF114FSY/ 15361123 Kevin White, UChicago bd2f2c1b7f232711ff9e80a387efa03c https://www.encodeproject.org/files/ENCFF837PDS/@@download/ENCFF837PDS.bigWig released s3://encode-public/2015/10/07/b25082b7-2ef9-4894-a026-26233852b51c/ENCFF837PDS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF084HRN bam bam alignments dm6 ENCSR344HOX Control ChIP-seq /fly-donors/ENCDO278QQS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/64875/'], '@type': ['Target', 'Item'], 'name': 'disco-r-dmelanogaster', 'label': 'disco-r', '@id': '/targets/disco-r-dmelanogaster/', 'title': 'disco-r (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9316c2d1-bb59-482c-879e-15887720332f', 'status': 'released'} dm3 X 15976057 16066779 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF217BJL/ 889104690 Kevin White, UChicago 6a02aed9e879de0e20f19b64dab55860 https://www.encodeproject.org/files/ENCFF084HRN/@@download/ENCFF084HRN.bam released s3://encode-public/2016/04/21/42c847b4-ef5e-42e2-b006-97fb3e4962a0/ENCFF084HRN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF041GIC bigWig bigWig signal of unique reads dm6 ENCSR344HOX Control ChIP-seq /fly-donors/ENCDO278QQS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/64875/'], '@type': ['Target', 'Item'], 'name': 'disco-r-dmelanogaster', 'label': 'disco-r', '@id': '/targets/disco-r-dmelanogaster/', 'title': 'disco-r (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9316c2d1-bb59-482c-879e-15887720332f', 'status': 'released'} dm3 X 15976057 16066779 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF084HRN/ 17429924 Kevin White, UChicago 2933deb09baadff63c0b73743cbc583c https://www.encodeproject.org/files/ENCFF041GIC/@@download/ENCFF041GIC.bigWig released s3://encode-public/2016/06/20/079e9106-1a1c-4343-b20a-e940c472cd05/ENCFF041GIC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF421ZTX bigWig bigWig read-depth normalized signal dm6 ENCSR344HOX Control ChIP-seq /fly-donors/ENCDO278QQS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/64875/'], '@type': ['Target', 'Item'], 'name': 'disco-r-dmelanogaster', 'label': 'disco-r', '@id': '/targets/disco-r-dmelanogaster/', 'title': 'disco-r (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9316c2d1-bb59-482c-879e-15887720332f', 'status': 'released'} dm3 X 15976057 16066779 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF084HRN/ 17468497 Kevin White, UChicago 892a52489500b1cd454a5bab3a786ead https://www.encodeproject.org/files/ENCFF421ZTX/@@download/ENCFF421ZTX.bigWig released s3://encode-public/2016/06/20/4760deb7-1685-46c3-a47b-c57c0520af34/ENCFF421ZTX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002BXS fastq fastq reads ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 1063798968 Bing Ren, UCSD 4209094e52a96f863d86ad8a91ea7a27 SRA:SRR3652610 https://www.encodeproject.org/files/ENCFF002BXS/@@download/ENCFF002BXS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/05/29/8a8915c5-bef7-4560-b43a-8424d36306a1/ENCFF002BXS.fastq.gz low read length ENCFF002BXU fastq fastq reads ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1288111324 Bing Ren, UCSD 44ce988f587f5cef5fb30904766a20fd SRA:SRR3652611 https://www.encodeproject.org/files/ENCFF002BXU/@@download/ENCFF002BXU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/05/29/05f54df9-da65-4255-bc9d-a688be48c2fc/ENCFF002BXU.fastq.gz low read length ENCFF190PMK bam bam unfiltered alignments mm10-minimal ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXS/, /files/ENCFF806TVZ/ 1392500507 ENCODE Processing Pipeline d2b3d3f5428aa40868ee24ec812819d3 https://www.encodeproject.org/files/ENCFF190PMK/@@download/ENCFF190PMK.bam archived s3://encode-public/2015/02/09/ec1f7258-4488-4166-a718-49bfc4ff333b/ENCFF190PMK.bam low read length ENCFF315URK bam bam unfiltered alignments mm10-minimal ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXU/ 1680863254 ENCODE Processing Pipeline 3b7b6dd940e174d4c472aadd77d8e311 https://www.encodeproject.org/files/ENCFF315URK/@@download/ENCFF315URK.bam archived s3://encode-public/2015/02/09/944b6361-d2c5-45de-8023-99ec78302f28/ENCFF315URK.bam low read length ENCFF532IQU bam bam alignments mm10-minimal ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXU/ 1088088567 ENCODE Processing Pipeline ae72300bafdae6f85e936c2523c35127 https://www.encodeproject.org/files/ENCFF532IQU/@@download/ENCFF532IQU.bam archived s3://encode-public/2015/03/20/c272c5c4-d5fc-42d3-8076-90fd3c1eeb83/ENCFF532IQU.bam low read length ENCFF540VMM bam bam alignments mm10-minimal ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXS/, /files/ENCFF806TVZ/ 893285593 ENCODE Processing Pipeline 3e4c4bc8b3105732bc79c696db7482f0 https://www.encodeproject.org/files/ENCFF540VMM/@@download/ENCFF540VMM.bam archived s3://encode-public/2015/03/20/aabf2006-dbca-4bc1-adb5-686cbec913a7/ENCFF540VMM.bam low read length ENCFF754FKJ bam bam unfiltered alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXS/, /files/ENCFF018NEO/ 1394633500 ENCODE Processing Pipeline bf792ec2e77878f2caac1b8bcb8688d6 https://www.encodeproject.org/files/ENCFF754FKJ/@@download/ENCFF754FKJ.bam released s3://encode-public/2016/05/20/6084c2dd-c88b-4e49-b969-7f6c8c7df25d/ENCFF754FKJ.bam ENCODE3 mm10 archived low read length ENCFF357EQT bam bam unfiltered alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXU/ 1683443328 ENCODE Processing Pipeline 745d422e6b660fcd7781ed6579882c14 https://www.encodeproject.org/files/ENCFF357EQT/@@download/ENCFF357EQT.bam released s3://encode-public/2016/05/20/32f7bd43-c7bd-4347-978d-f4954f2f72ee/ENCFF357EQT.bam ENCODE3 mm10 archived low read length ENCFF394IRO bam bam alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXS/, /files/ENCFF018NEO/ 892934821 ENCODE Processing Pipeline 79aa9dc4c18274f8de715673f2d4b860 https://www.encodeproject.org/files/ENCFF394IRO/@@download/ENCFF394IRO.bam released s3://encode-public/2016/05/20/225672af-9192-4262-8aba-ec7b9954af22/ENCFF394IRO.bam ENCODE3 mm10 archived low read length ENCFF742VJP bam bam alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXU/ 1087715413 ENCODE Processing Pipeline 1d2e40092925b75784634309f691bc2e https://www.encodeproject.org/files/ENCFF742VJP/@@download/ENCFF742VJP.bam released s3://encode-public/2016/05/20/febee8a8-d115-48de-85e8-566efc2626b1/ENCFF742VJP.bam ENCODE3 mm10 archived low read length ENCFF039WUF bam bam unfiltered alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXU/ 1632393059 ENCODE Processing Pipeline 4b63e6e7a2d391af5757e19ca007b09a https://www.encodeproject.org/files/ENCFF039WUF/@@download/ENCFF039WUF.bam released s3://encode-public/2020/10/08/750161d0-1300-4654-9c69-dd647b9d8622/ENCFF039WUF.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF463IGW bam bam alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXS/ 957865313 ENCODE Processing Pipeline e0e81217127fc31ffd8ad2a136787d3d https://www.encodeproject.org/files/ENCFF463IGW/@@download/ENCFF463IGW.bam released s3://encode-public/2020/10/08/04a1dd2e-3e0c-41bd-801f-ce796d9f7a16/ENCFF463IGW.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF871JQJ bam bam unfiltered alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXS/ 1351285657 ENCODE Processing Pipeline 7f1a0f8bad6f48a9fb6961535ea69934 https://www.encodeproject.org/files/ENCFF871JQJ/@@download/ENCFF871JQJ.bam released s3://encode-public/2020/10/08/6f092517-0df8-4f85-acba-48fc48da14b9/ENCFF871JQJ.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF712ICC bam bam alignments mm10 ENCSR642DUV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXU/ 1165975402 ENCODE Processing Pipeline cd2fe02bbfbf82dc29648add236b9794 https://www.encodeproject.org/files/ENCFF712ICC/@@download/ENCFF712ICC.bam released s3://encode-public/2020/10/08/ec2922db-9e7a-4b4a-9134-dd749708676f/ENCFF712ICC.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF730BGE fastq fastq reads ENCSR152QMD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 single-ended 1066979763 Yijun Ruan, JAX d6b9a44fcb7672700be821a4956ba298 SRA:SRR14105487 https://www.encodeproject.org/files/ENCFF730BGE/@@download/ENCFF730BGE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/08/07/e7b90cf5-7c64-4ce1-8a64-0441e41eac43/ENCFF730BGE.fastq.gz low read depth ENCFF945MAZ bam bam alignments GRCh38 ENCSR152QMD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF906FLV/, /files/ENCFF730BGE/ 997021546 Yijun Ruan, JAX 1c26c0f96824d9d06c43ba5d2f2a2844 https://www.encodeproject.org/files/ENCFF945MAZ/@@download/ENCFF945MAZ.bam released s3://encode-public/2020/08/07/719c04c3-1ede-4a7f-8c2f-6ae22a98bb01/ENCFF945MAZ.bam Lab custom GRCh38 archived low read depth ENCFF563VMM bam bam unfiltered alignments GRCh38 ENCSR152QMD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF730BGE/, /files/ENCFF110MCL/ 1218946302 ENCODE Processing Pipeline c7e30b703270c7739d7b441e738b6fe7 https://www.encodeproject.org/files/ENCFF563VMM/@@download/ENCFF563VMM.bam released s3://encode-public/2020/11/13/60f30048-a620-4a06-9cd5-59fcd4b37573/ENCFF563VMM.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF131KCT bam bam alignments GRCh38 ENCSR152QMD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-09-28 ENCODE 1 1_1 75 /files/ENCFF730BGE/, /files/ENCFF110MCL/ 998675698 ENCODE Processing Pipeline 1ae7a8c898ccd30ba4eec3bdf087bb65 https://www.encodeproject.org/files/ENCFF131KCT/@@download/ENCFF131KCT.bam released s3://encode-public/2020/11/13/43049388-7f33-4c34-be16-6680e4438949/ENCFF131KCT.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF915AJO bam bam alignments dm6 ENCSR827FFL Control ChIP-seq /fly-donors/ENCDO505ITQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37480/'], '@type': ['Target', 'Item'], 'name': 'HmgZ-dmelanogaster', 'label': 'HmgZ', '@id': '/targets/HmgZ-dmelanogaster/', 'title': 'HmgZ (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor'], 'uuid': '01926e73-1a5a-4c03-ac61-bb115b41f35b', 'status': 'released'} dm3 2R 17566752 17657089 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF240NBJ/, /files/ENCFF479RCH/ 859055159 Kevin White, UChicago 4cc623fed81a607345429cbc38529686 https://www.encodeproject.org/files/ENCFF915AJO/@@download/ENCFF915AJO.bam released s3://encode-public/2018/05/29/e9423a35-bfc3-4b88-944a-55793ca165ab/ENCFF915AJO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF240NBJ fastq fastq reads ENCSR827FFL Control ChIP-seq /fly-donors/ENCDO505ITQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37480/'], '@type': ['Target', 'Item'], 'name': 'HmgZ-dmelanogaster', 'label': 'HmgZ', '@id': '/targets/HmgZ-dmelanogaster/', 'title': 'HmgZ (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor'], 'uuid': '01926e73-1a5a-4c03-ac61-bb115b41f35b', 'status': 'released'} dm3 2R 17566752 17657089 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 649798153 Kevin White, UChicago 6dfc7e7775d0167274113fefedfc4432 https://www.encodeproject.org/files/ENCFF240NBJ/@@download/ENCFF240NBJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF685TAR/ released s3://encode-public/2018/05/29/d1920b25-f369-4863-95e5-d258f5919bf3/ENCFF240NBJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF910VYT bigWig bigWig signal of unique reads dm6 ENCSR827FFL Control ChIP-seq /fly-donors/ENCDO505ITQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37480/'], '@type': ['Target', 'Item'], 'name': 'HmgZ-dmelanogaster', 'label': 'HmgZ', '@id': '/targets/HmgZ-dmelanogaster/', 'title': 'HmgZ (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor'], 'uuid': '01926e73-1a5a-4c03-ac61-bb115b41f35b', 'status': 'released'} dm3 2R 17566752 17657089 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF915AJO/ 17548280 Kevin White, UChicago bd3a1eac0d47e27a2dec4ebdc828d33b https://www.encodeproject.org/files/ENCFF910VYT/@@download/ENCFF910VYT.bigWig released s3://encode-public/2018/05/30/e0a78c61-91a8-462f-9c63-40c16e655f89/ENCFF910VYT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF007CTV bigWig bigWig read-depth normalized signal dm6 ENCSR827FFL Control ChIP-seq /fly-donors/ENCDO505ITQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37480/'], '@type': ['Target', 'Item'], 'name': 'HmgZ-dmelanogaster', 'label': 'HmgZ', '@id': '/targets/HmgZ-dmelanogaster/', 'title': 'HmgZ (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'cofactor'], 'uuid': '01926e73-1a5a-4c03-ac61-bb115b41f35b', 'status': 'released'} dm3 2R 17566752 17657089 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF915AJO/ 17556840 Kevin White, UChicago fe124d96ce305673a85c1b0bc75c7fa6 https://www.encodeproject.org/files/ENCFF007CTV/@@download/ENCFF007CTV.bigWig released s3://encode-public/2018/05/30/727c3d34-acfa-4f80-b750-27918a001fae/ENCFF007CTV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF828RVV fastq fastq reads ENCSR157EWZ Control ChIP-seq /fly-donors/ENCDO559ELX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 588494139 Kevin White, UChicago 16424059ebda9e36f7937052d9f20820 https://www.encodeproject.org/files/ENCFF828RVV/@@download/ENCFF828RVV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/c4b934e7-5dcc-4f3d-9102-d0d7ad47da96/ENCFF828RVV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF189KEK bam bam alignments dm3 ENCSR157EWZ Control ChIP-seq /fly-donors/ENCDO559ELX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF828RVV/ 854136715 Kevin White, UChicago 6e0f5b99fcf3de95d532de645796611d https://www.encodeproject.org/files/ENCFF189KEK/@@download/ENCFF189KEK.bam released s3://encode-public/2015/08/05/18c34544-88cf-4ef6-bf90-4b0279e343a6/ENCFF189KEK.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF775CXC bigWig bigWig signal of unique reads dm3 ENCSR157EWZ Control ChIP-seq /fly-donors/ENCDO559ELX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF189KEK/ 15341804 Kevin White, UChicago 9123acebeada1fe08a5b87e00151e94b https://www.encodeproject.org/files/ENCFF775CXC/@@download/ENCFF775CXC.bigWig released s3://encode-public/2015/10/07/cdb2d92a-f19c-47c5-af61-441cd3744694/ENCFF775CXC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF880MCE bigWig bigWig read-depth normalized signal dm3 ENCSR157EWZ Control ChIP-seq /fly-donors/ENCDO559ELX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF189KEK/ 15389888 Kevin White, UChicago 6150d3714a28e063e38e11224ffbab5a https://www.encodeproject.org/files/ENCFF880MCE/@@download/ENCFF880MCE.bigWig released s3://encode-public/2015/10/07/b4202104-aea1-447a-ba18-67f90802d74a/ENCFF880MCE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF033MJV bam bam alignments dm6 ENCSR157EWZ Control ChIP-seq /fly-donors/ENCDO559ELX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF828RVV/ 851259593 Kevin White, UChicago 1fafbd0225150415cad6b5f911e2133a https://www.encodeproject.org/files/ENCFF033MJV/@@download/ENCFF033MJV.bam released s3://encode-public/2016/04/21/e12bed7b-71b3-4df6-aaef-c91fe1e17b68/ENCFF033MJV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF743CEH bigWig bigWig read-depth normalized signal dm6 ENCSR157EWZ Control ChIP-seq /fly-donors/ENCDO559ELX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF033MJV/ 17514726 Kevin White, UChicago cd1d2c8278106c19a5ec0fccbba5b400 https://www.encodeproject.org/files/ENCFF743CEH/@@download/ENCFF743CEH.bigWig released s3://encode-public/2016/06/21/cdd12b4a-2586-4e63-bc44-683c15b9f842/ENCFF743CEH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF111HVR bigWig bigWig signal of unique reads dm6 ENCSR157EWZ Control ChIP-seq /fly-donors/ENCDO559ELX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF033MJV/ 17445583 Kevin White, UChicago 9b0c1e464ca8ad7ccbdc3ceab56c588a https://www.encodeproject.org/files/ENCFF111HVR/@@download/ENCFF111HVR.bigWig released s3://encode-public/2016/06/21/fa31ed86-5ca3-46d9-a7bd-c3d61393c527/ENCFF111HVR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF071UWJ fastq fastq reads ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 1 1_1 45 single-ended 719576445 Bing Ren, UCSD 9b674969d40bbc8e732c67d31606e274 SRA:SRR4235596 https://www.encodeproject.org/files/ENCFF071UWJ/@@download/ENCFF071UWJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/23/6b02513c-2970-4432-bad0-d6f561e5ef2f/ENCFF071UWJ.fastq.gz low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF659VUB fastq fastq reads ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 2 2_1 36 single-ended 779636895 Bing Ren, UCSD 41e484266afe7babb4a9b7ebd8bfe837 SRA:SRR4235595 https://www.encodeproject.org/files/ENCFF659VUB/@@download/ENCFF659VUB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/23/9c7be739-cf25-47ad-b2f8-63ad9ef4df2c/ENCFF659VUB.fastq.gz low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF611GXU bam bam unfiltered alignments mm10-minimal ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 2 2_1 36 /files/ENCFF659VUB/, /files/ENCFF806TVZ/ 990206247 J. Michael Cherry, Stanford 62bc1df3f805b7643c1077c627d32133 https://www.encodeproject.org/files/ENCFF611GXU/@@download/ENCFF611GXU.bam archived s3://encode-public/2015/02/04/8c2ba1ec-b355-4789-9ede-4f90f7cab09d/ENCFF611GXU.bam ENCODE3 mm10-minimal archived low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF542BGS bam bam unfiltered alignments mm10-minimal ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 1 1_1 45 /files/ENCFF071UWJ/, /files/ENCFF806TVZ/ 964296474 J. Michael Cherry, Stanford 1d9b853a380ec4347d5e0651f971b431 https://www.encodeproject.org/files/ENCFF542BGS/@@download/ENCFF542BGS.bam archived s3://encode-public/2015/02/04/7ed5182d-874e-40e0-a231-c7453904f221/ENCFF542BGS.bam ENCODE3 mm10-minimal archived low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF318EHA bam bam alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF659VUB/ 450624178 ENCODE Processing Pipeline d93a4f3fbbfcc390af029b44e0adcaf4 https://www.encodeproject.org/files/ENCFF318EHA/@@download/ENCFF318EHA.bam released s3://encode-public/2016/04/28/0ecfc84d-c146-4c0a-8955-3577d53b185b/ENCFF318EHA.bam ENCODE3 mm10 archived low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF654ZMO bam bam unfiltered alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF659VUB/ 991688076 ENCODE Processing Pipeline 1f5208c0904072843a7dc2e6ddf149fd https://www.encodeproject.org/files/ENCFF654ZMO/@@download/ENCFF654ZMO.bam released s3://encode-public/2016/07/06/5ef56caa-e7ab-49de-89b7-6586f8a9d662/ENCFF654ZMO.bam ENCODE3 mm10 archived low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF686TXW bam bam unfiltered alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 1 1_1 36 /files/ENCFF071UWJ/, /files/ENCFF309GLL/ 804050432 ENCODE Processing Pipeline 0296e39f2446968cb70236f4ca85ad38 https://www.encodeproject.org/files/ENCFF686TXW/@@download/ENCFF686TXW.bam released s3://encode-public/2020/10/12/f34eb97b-9122-4ca1-af83-5df71be2daca/ENCFF686TXW.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF950BMW bam bam unfiltered alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF659VUB/ 967321213 ENCODE Processing Pipeline 6c9b63417991d3a4cc9ca7f85fa84db8 https://www.encodeproject.org/files/ENCFF950BMW/@@download/ENCFF950BMW.bam released s3://encode-public/2020/10/12/07b062fa-1df1-4505-b2a9-54b8dc38511b/ENCFF950BMW.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF083BUU bam bam alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 1 1_1 36 /files/ENCFF071UWJ/, /files/ENCFF309GLL/ 569271913 ENCODE Processing Pipeline ff2e66fd4025a967014ea1f8b93663c6 https://www.encodeproject.org/files/ENCFF083BUU/@@download/ENCFF083BUU.bam released s3://encode-public/2020/10/12/6d199b72-6087-4c83-8ae8-d6bffa507f14/ENCFF083BUU.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF963ZWM bam bam unfiltered alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF071UWJ/ 829136914 ENCODE Processing Pipeline 0e4c7a72925689be9b9cefc5a29c0aca https://www.encodeproject.org/files/ENCFF963ZWM/@@download/ENCFF963ZWM.bam released s3://encode-public/2016/11/28/04abcc08-d208-4e5d-962b-bb5b132ad1ca/ENCFF963ZWM.bam ENCODE3 mm10 archived low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF682ICT bam bam alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF071UWJ/ 538332128 ENCODE Processing Pipeline 41c7bc4e0680bd379af7819e8279072d https://www.encodeproject.org/files/ENCFF682ICT/@@download/ENCFF682ICT.bam released s3://encode-public/2016/11/28/cc44583c-37d5-4b3b-a1b3-65895c272ea9/ENCFF682ICT.bam ENCODE3 mm10 archived low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF664MLQ bam bam alignments mm10 ENCSR095IPH Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007075 ES-E14 cell line Mus musculus DNA 2014-10-23 ENCODE 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF659VUB/ 478305792 ENCODE Processing Pipeline 294d898d22e51a9d77005f0cf248ca1a https://www.encodeproject.org/files/ENCFF664MLQ/@@download/ENCFF664MLQ.bam released s3://encode-public/2020/10/12/8f0c3254-2d29-4c57-bc73-5944b88ba4b0/ENCFF664MLQ.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, mixed read lengths, low read length, mild to moderate bottlenecking ENCFF002BXX fastq fastq reads ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 858874215 Bing Ren, UCSD f056a83456f3fe7c287523c707b5c468 SRA:SRR3651336 https://www.encodeproject.org/files/ENCFF002BXX/@@download/ENCFF002BXX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/26596678-6c97-47aa-9886-aa4bd3d578ac/ENCFF002BXX.fastq.gz low read depth, low read length ENCFF002BXZ fastq fastq reads ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 660774959 Bing Ren, UCSD 3feebeabb073cf9a316c68060fefc697 SRA:SRR3651335 https://www.encodeproject.org/files/ENCFF002BXZ/@@download/ENCFF002BXZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/57025816-6a85-4e64-959b-d9144317f6cf/ENCFF002BXZ.fastq.gz low read depth, low read length ENCFF853VVE bam bam unfiltered alignments mm10-minimal ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXX/ 1101828206 ENCODE Processing Pipeline 053d93da39db54e075a130cf149ff9cc https://www.encodeproject.org/files/ENCFF853VVE/@@download/ENCFF853VVE.bam archived s3://encode-public/2015/02/09/c5c52e9f-56b1-4735-b6d4-1d72cda4e452/ENCFF853VVE.bam low read depth, low read length ENCFF190IUL bam bam unfiltered alignments mm10-minimal ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXZ/, /files/ENCFF806TVZ/ 847929239 ENCODE Processing Pipeline 0153135ba0e880b8c6aea841539e6210 https://www.encodeproject.org/files/ENCFF190IUL/@@download/ENCFF190IUL.bam archived s3://encode-public/2015/02/09/58acd11e-ff1c-493a-9744-bb2791f79840/ENCFF190IUL.bam low read depth, low read length ENCFF527LXR bam bam alignments mm10-minimal ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXX/ 655552812 ENCODE Processing Pipeline 4c35d36100a2a12d706e38cad595653c https://www.encodeproject.org/files/ENCFF527LXR/@@download/ENCFF527LXR.bam archived s3://encode-public/2015/03/20/9715084b-8f86-4795-9be3-c1c0894a96ef/ENCFF527LXR.bam low read depth, low read length ENCFF153BXF bam bam alignments mm10-minimal ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXZ/, /files/ENCFF806TVZ/ 504876617 ENCODE Processing Pipeline f7f646170476c9503db25a35cd5fa972 https://www.encodeproject.org/files/ENCFF153BXF/@@download/ENCFF153BXF.bam archived s3://encode-public/2015/03/20/02f6c81d-31a2-411a-91f4-faf1b1f107bd/ENCFF153BXF.bam low read depth, low read length ENCFF019UDH bam bam unfiltered alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXZ/ 849324718 ENCODE Processing Pipeline b930b138c4c2470144d3bfbb7f4f6d57 https://www.encodeproject.org/files/ENCFF019UDH/@@download/ENCFF019UDH.bam released s3://encode-public/2016/05/20/47780ceb-b78a-4b8d-a3de-f529da4828f1/ENCFF019UDH.bam ENCODE3 mm10 archived low read depth, low read length ENCFF080OAF bam bam unfiltered alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXX/ 1103538980 ENCODE Processing Pipeline 68660f6586746818d7c3f30d83d3198f https://www.encodeproject.org/files/ENCFF080OAF/@@download/ENCFF080OAF.bam released s3://encode-public/2016/05/20/8e8323b8-6189-48c6-b1ac-3ea378dd36ad/ENCFF080OAF.bam ENCODE3 mm10 archived low read depth, low read length ENCFF095LNY bam bam alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXZ/ 504692128 ENCODE Processing Pipeline bae61797039263bef6e7103071d94033 https://www.encodeproject.org/files/ENCFF095LNY/@@download/ENCFF095LNY.bam released s3://encode-public/2016/05/20/1acb6127-ad2f-4911-926b-01c16a4dd7d4/ENCFF095LNY.bam ENCODE3 mm10 archived low read depth, low read length ENCFF426BAZ bam bam alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXX/ 655299808 ENCODE Processing Pipeline f9b3fc3bb7033ba646074dfece6ecb06 https://www.encodeproject.org/files/ENCFF426BAZ/@@download/ENCFF426BAZ.bam released s3://encode-public/2016/05/20/c52713fe-df0d-467d-843b-b45310083c85/ENCFF426BAZ.bam ENCODE3 mm10 archived low read depth, low read length ENCFF349BPX bam bam unfiltered alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXZ/, /files/ENCFF309GLL/ 825952306 ENCODE Processing Pipeline b1f902e3d7976ce9402dab92396a1c17 https://www.encodeproject.org/files/ENCFF349BPX/@@download/ENCFF349BPX.bam released s3://encode-public/2020/10/10/6397d647-95d0-4663-bbf3-94b4d0fe0813/ENCFF349BPX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF330QWA bam bam unfiltered alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXX/, /files/ENCFF309GLL/ 1073120510 ENCODE Processing Pipeline 7efdc79c147ef567875c9a8967799fac https://www.encodeproject.org/files/ENCFF330QWA/@@download/ENCFF330QWA.bam released s3://encode-public/2020/10/10/7dfdf982-6fee-435b-a346-99bd572a2fe7/ENCFF330QWA.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF575CWX bam bam alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXX/, /files/ENCFF309GLL/ 703485780 ENCODE Processing Pipeline b36c1f7cab2e782ddab98a3c87ac2258 https://www.encodeproject.org/files/ENCFF575CWX/@@download/ENCFF575CWX.bam released s3://encode-public/2020/10/10/0322bf63-e9fe-4e21-91b4-aa203fb616ea/ENCFF575CWX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF545GMZ bam bam alignments mm10 ENCSR082JEN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXZ/, /files/ENCFF309GLL/ 542026276 ENCODE Processing Pipeline 10086a67c35a1455195ef9dcdbe6a666 https://www.encodeproject.org/files/ENCFF545GMZ/@@download/ENCFF545GMZ.bam released s3://encode-public/2020/10/10/1bd6300d-6f8c-425e-a14c-1a9d81b76502/ENCFF545GMZ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF765VSS fastq fastq reads ENCSR302CFJ Control ChIP-seq /human-donors/ENCDO987OSE/ EFO:0002234 MG63 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF951TYD/ 5753335964 Michael Snyder, Stanford 26dfc0dde9cee2c5ec6133f8992b436f SRA:SRR13803803 https://www.encodeproject.org/files/ENCFF765VSS/@@download/ENCFF765VSS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/e2a852fb-e586-437d-afcf-1d2044b790f0/ENCFF765VSS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF951TYD fastq fastq reads ENCSR302CFJ Control ChIP-seq /human-donors/ENCDO987OSE/ EFO:0002234 MG63 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF765VSS/ 6121710059 Michael Snyder, Stanford d4f644e7575469dc69c367c60bf07aec SRA:SRR13803803 https://www.encodeproject.org/files/ENCFF951TYD/@@download/ENCFF951TYD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/414ae743-9ba0-4eb1-b53d-da459d6a2364/ENCFF951TYD.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF740QYZ bam bam unfiltered alignments GRCh38 ENCSR302CFJ Control ChIP-seq /human-donors/ENCDO987OSE/ EFO:0002234 MG63 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF951TYD/, /files/ENCFF765VSS/ 10038342682 ENCODE Processing Pipeline 1e5d82d4defa7f07ec38044601d978fa https://www.encodeproject.org/files/ENCFF740QYZ/@@download/ENCFF740QYZ.bam released s3://encode-public/2020/08/20/18120eab-455b-41dc-85e5-a47a9667eede/ENCFF740QYZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF381RWF bam bam alignments GRCh38 ENCSR302CFJ Control ChIP-seq /human-donors/ENCDO987OSE/ EFO:0002234 MG63 cell line Homo sapiens DNA 2020-08-28 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF951TYD/, /files/ENCFF765VSS/ 5970423962 ENCODE Processing Pipeline d2b2b1db94ec8adbdbe736a73e0d2326 https://www.encodeproject.org/files/ENCFF381RWF/@@download/ENCFF381RWF.bam released s3://encode-public/2020/08/20/875866a8-3e5e-4700-9e1d-93673016308c/ENCFF381RWF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF139EVF fastq fastq reads ENCSR775TWW Control ChIP-seq /worm-donors/ENCDO380OOH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178919/'], '@type': ['Target', 'Item'], 'name': 'ceh-34-celegans', 'label': 'ceh-34', '@id': '/targets/ceh-34-celegans/', 'title': 'ceh-34 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f68eca57-def1-40f8-9a22-3f058981cacc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 1189056678 Kevin White, UChicago 3c67e40d1733856b66c3fae770469f7d https://www.encodeproject.org/files/ENCFF139EVF/@@download/ENCFF139EVF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/05db988d-89e4-4825-bcfd-bbcc0db595d6/ENCFF139EVF.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF439YVF bam bam alignments ce10 ENCSR775TWW Control ChIP-seq /worm-donors/ENCDO380OOH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178919/'], '@type': ['Target', 'Item'], 'name': 'ceh-34-celegans', 'label': 'ceh-34', '@id': '/targets/ceh-34-celegans/', 'title': 'ceh-34 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f68eca57-def1-40f8-9a22-3f058981cacc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF139EVF/ 1679846549 Kevin White, UChicago c8f8b93786e88901681a23e20cd76c4e https://www.encodeproject.org/files/ENCFF439YVF/@@download/ENCFF439YVF.bam released s3://encode-public/2015/08/19/ee10c20e-e8e2-4d04-819f-30719372de7b/ENCFF439YVF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF461VSH bigWig bigWig read-depth normalized signal ce10 ENCSR775TWW Control ChIP-seq /worm-donors/ENCDO380OOH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178919/'], '@type': ['Target', 'Item'], 'name': 'ceh-34-celegans', 'label': 'ceh-34', '@id': '/targets/ceh-34-celegans/', 'title': 'ceh-34 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f68eca57-def1-40f8-9a22-3f058981cacc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF439YVF/ 9980170 Kevin White, UChicago 04c0af3603107acfa4d915dd1e501bb6 https://www.encodeproject.org/files/ENCFF461VSH/@@download/ENCFF461VSH.bigWig released s3://encode-public/2015/10/02/1befd595-60b3-4107-b9f3-0c37bfaf7ab6/ENCFF461VSH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF788OYJ bigWig bigWig signal of unique reads ce10 ENCSR775TWW Control ChIP-seq /worm-donors/ENCDO380OOH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178919/'], '@type': ['Target', 'Item'], 'name': 'ceh-34-celegans', 'label': 'ceh-34', '@id': '/targets/ceh-34-celegans/', 'title': 'ceh-34 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f68eca57-def1-40f8-9a22-3f058981cacc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF439YVF/ 10049563 Kevin White, UChicago 6e718f7b35293597943a5a603dc4e6f8 https://www.encodeproject.org/files/ENCFF788OYJ/@@download/ENCFF788OYJ.bigWig released s3://encode-public/2015/10/02/54cb248d-b173-4cdf-ad89-3636f02bd602/ENCFF788OYJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF852IMG bam bam alignments ce11 ENCSR775TWW Control ChIP-seq /worm-donors/ENCDO380OOH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178919/'], '@type': ['Target', 'Item'], 'name': 'ceh-34-celegans', 'label': 'ceh-34', '@id': '/targets/ceh-34-celegans/', 'title': 'ceh-34 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f68eca57-def1-40f8-9a22-3f058981cacc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF139EVF/ 1681323336 Kevin White, UChicago ef99aa1d56caa78541471fd7aceb4509 https://www.encodeproject.org/files/ENCFF852IMG/@@download/ENCFF852IMG.bam released s3://encode-public/2016/01/16/bc8d6f6c-06a3-4b9a-9988-d6ed5da37b88/ENCFF852IMG.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF951CWT bigWig bigWig signal of unique reads ce11 ENCSR775TWW Control ChIP-seq /worm-donors/ENCDO380OOH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178919/'], '@type': ['Target', 'Item'], 'name': 'ceh-34-celegans', 'label': 'ceh-34', '@id': '/targets/ceh-34-celegans/', 'title': 'ceh-34 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f68eca57-def1-40f8-9a22-3f058981cacc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF852IMG/ 10045753 Kevin White, UChicago ff27a5cdfe5b303089dc9e4cdf7a64a1 https://www.encodeproject.org/files/ENCFF951CWT/@@download/ENCFF951CWT.bigWig released s3://encode-public/2016/02/03/cef67a33-7b84-4be2-9b20-688bbfab0ad4/ENCFF951CWT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF092GUK bigWig bigWig read-depth normalized signal ce11 ENCSR775TWW Control ChIP-seq /worm-donors/ENCDO380OOH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178919/'], '@type': ['Target', 'Item'], 'name': 'ceh-34-celegans', 'label': 'ceh-34', '@id': '/targets/ceh-34-celegans/', 'title': 'ceh-34 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f68eca57-def1-40f8-9a22-3f058981cacc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF852IMG/ 9977149 Kevin White, UChicago 13c058a0a21e42e30a6715cdcf77611c https://www.encodeproject.org/files/ENCFF092GUK/@@download/ENCFF092GUK.bigWig released s3://encode-public/2016/02/03/ba326a2b-1afe-493f-a54c-788caf7c1ffb/ENCFF092GUK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF343DRN fastq fastq reads ENCSR695HJO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 532525361 Kevin White, UChicago ce4221f033445ee7a773e6ec67e3a288 https://www.encodeproject.org/files/ENCFF343DRN/@@download/ENCFF343DRN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/f96c4ce5-bb09-48ff-9d5c-2ae65f368e4f/ENCFF343DRN.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF157LYW bam bam alignments ce10 ENCSR695HJO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF343DRN/ 766085606 Kevin White, UChicago 1d99cb27a3868d63a60944919f294199 https://www.encodeproject.org/files/ENCFF157LYW/@@download/ENCFF157LYW.bam released s3://encode-public/2015/08/07/3f5b0652-12c2-4b1a-888d-d66e06f53612/ENCFF157LYW.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF710BYR bigWig bigWig read-depth normalized signal ce10 ENCSR695HJO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF157LYW/ 9957497 Kevin White, UChicago c801788d3878231ff363e434f30fe742 https://www.encodeproject.org/files/ENCFF710BYR/@@download/ENCFF710BYR.bigWig released s3://encode-public/2015/10/02/b669e365-fdef-49f1-85b1-22ce04d6c2b2/ENCFF710BYR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF748DIN bigWig bigWig signal of unique reads ce10 ENCSR695HJO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF157LYW/ 9954450 Kevin White, UChicago def87ae111c8e50c457b4a057b2e281b https://www.encodeproject.org/files/ENCFF748DIN/@@download/ENCFF748DIN.bigWig released s3://encode-public/2015/10/02/d8e5e31e-f55f-488f-a66b-56cf13f3ec9a/ENCFF748DIN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF673UES bam bam alignments ce11 ENCSR695HJO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF343DRN/ 766738627 Kevin White, UChicago 8d1d20fd932aed1770391fc7cd1459e5 https://www.encodeproject.org/files/ENCFF673UES/@@download/ENCFF673UES.bam released s3://encode-public/2016/01/19/8c46699f-accd-4a77-934a-4b62a76513af/ENCFF673UES.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF254AYP bigWig bigWig signal of unique reads ce11 ENCSR695HJO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF673UES/ 9951918 Kevin White, UChicago df5f4ff93fe8830a601d7e573e6dbce3 https://www.encodeproject.org/files/ENCFF254AYP/@@download/ENCFF254AYP.bigWig released s3://encode-public/2016/02/03/7ded655e-3f75-40ea-abb9-8cdcea73cc30/ENCFF254AYP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF039ABJ bigWig bigWig read-depth normalized signal ce11 ENCSR695HJO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF673UES/ 9952769 Kevin White, UChicago 4b90bb70a74a08fbbca5f6ed082b83d4 https://www.encodeproject.org/files/ENCFF039ABJ/@@download/ENCFF039ABJ.bigWig released s3://encode-public/2016/02/03/7a32ff3a-92cf-4349-9f4f-bf5a9e1ec5a1/ENCFF039ABJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF099MEP fastq fastq reads ENCSR577GDS Control ChIP-seq /worm-donors/ENCDO492OAY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174569/'], '@type': ['Target', 'Item'], 'name': 'die-1-celegans', 'label': 'die-1', '@id': '/targets/die-1-celegans/', 'title': 'die-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2a4c4df3-98f1-43e5-aeeb-eaf6e017bfcb', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 743171808 Kevin White, UChicago 45811a1bed0d9e386bedd55fb04a6dd2 https://www.encodeproject.org/files/ENCFF099MEP/@@download/ENCFF099MEP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/3a9cee48-0a9e-4ae0-b81a-fc3ac387a29a/ENCFF099MEP.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF464MCI bam bam alignments ce10 ENCSR577GDS Control ChIP-seq /worm-donors/ENCDO492OAY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174569/'], '@type': ['Target', 'Item'], 'name': 'die-1-celegans', 'label': 'die-1', '@id': '/targets/die-1-celegans/', 'title': 'die-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2a4c4df3-98f1-43e5-aeeb-eaf6e017bfcb', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF099MEP/ 884896170 Kevin White, UChicago 9d8fd829d959dbb32ce81ba8fd6bdada https://www.encodeproject.org/files/ENCFF464MCI/@@download/ENCFF464MCI.bam released s3://encode-public/2015/08/19/9a772d49-1374-4b8c-947a-583b5f292457/ENCFF464MCI.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF830NCR bigWig bigWig read-depth normalized signal ce10 ENCSR577GDS Control ChIP-seq /worm-donors/ENCDO492OAY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174569/'], '@type': ['Target', 'Item'], 'name': 'die-1-celegans', 'label': 'die-1', '@id': '/targets/die-1-celegans/', 'title': 'die-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2a4c4df3-98f1-43e5-aeeb-eaf6e017bfcb', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF464MCI/ 9953957 Kevin White, UChicago 341998d78033e552b926269931135664 https://www.encodeproject.org/files/ENCFF830NCR/@@download/ENCFF830NCR.bigWig released s3://encode-public/2015/10/02/1e4066f3-f1d1-4588-be00-80f7d5215de4/ENCFF830NCR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF742UFD bigWig bigWig signal of unique reads ce10 ENCSR577GDS Control ChIP-seq /worm-donors/ENCDO492OAY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174569/'], '@type': ['Target', 'Item'], 'name': 'die-1-celegans', 'label': 'die-1', '@id': '/targets/die-1-celegans/', 'title': 'die-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2a4c4df3-98f1-43e5-aeeb-eaf6e017bfcb', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF464MCI/ 9950867 Kevin White, UChicago 2991a46d60fd551c2e24edcffe332943 https://www.encodeproject.org/files/ENCFF742UFD/@@download/ENCFF742UFD.bigWig released s3://encode-public/2015/10/02/29d643eb-5f3c-4280-a74d-7789266e6e03/ENCFF742UFD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF239SVU bam bam alignments ce11 ENCSR577GDS Control ChIP-seq /worm-donors/ENCDO492OAY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174569/'], '@type': ['Target', 'Item'], 'name': 'die-1-celegans', 'label': 'die-1', '@id': '/targets/die-1-celegans/', 'title': 'die-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2a4c4df3-98f1-43e5-aeeb-eaf6e017bfcb', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF099MEP/ 885667165 Kevin White, UChicago 9cae465b6dceffc9c02b32b2dbccdd51 https://www.encodeproject.org/files/ENCFF239SVU/@@download/ENCFF239SVU.bam released s3://encode-public/2016/01/16/f043f615-0ec7-4eb5-90dd-6d8989957a06/ENCFF239SVU.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF859KNS bigWig bigWig signal of unique reads ce11 ENCSR577GDS Control ChIP-seq /worm-donors/ENCDO492OAY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174569/'], '@type': ['Target', 'Item'], 'name': 'die-1-celegans', 'label': 'die-1', '@id': '/targets/die-1-celegans/', 'title': 'die-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2a4c4df3-98f1-43e5-aeeb-eaf6e017bfcb', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF239SVU/ 9948280 Kevin White, UChicago 31482c854f940f978261f4b701c983d5 https://www.encodeproject.org/files/ENCFF859KNS/@@download/ENCFF859KNS.bigWig released s3://encode-public/2016/02/03/cce31be7-7240-43a2-958c-da8414430f9e/ENCFF859KNS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF424IKA bigWig bigWig read-depth normalized signal ce11 ENCSR577GDS Control ChIP-seq /worm-donors/ENCDO492OAY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174569/'], '@type': ['Target', 'Item'], 'name': 'die-1-celegans', 'label': 'die-1', '@id': '/targets/die-1-celegans/', 'title': 'die-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2a4c4df3-98f1-43e5-aeeb-eaf6e017bfcb', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF239SVU/ 9952258 Kevin White, UChicago 32eed6ace6e095b70819744cb9e1e167 https://www.encodeproject.org/files/ENCFF424IKA/@@download/ENCFF424IKA.bigWig released s3://encode-public/2016/02/03/66776b9b-b4b6-4e88-bbbf-3d3aee7cd069/ENCFF424IKA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF001NCM bigWig bigWig signal mm9 ENCSR000AHI Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 /files/ENCFF001NCO/ 244090260 Sherman Weissman, Yale b2b3b19c63bdb67a83345b118bed4088 https://www.encodeproject.org/files/ENCFF001NCM/@@download/ENCFF001NCM.bigWig archived s3://encode-public/2013/04/18/b21b3f14-892c-4b94-8412-70603b65f711/ENCFF001NCM.bigWig Lab custom mm9 released low read length ENCFF001NCO bam bam alignments mm9 ENCSR000AHI Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 27 /files/ENCFF001NDX/ 705085104 Sherman Weissman, Yale 5714d286b5173e3591a89cefcb0a073d https://www.encodeproject.org/files/ENCFF001NCO/@@download/ENCFF001NCO.bam archived s3://encode-public/2010/04/26/34f40e3b-23f1-4756-ac04-28a345701694/ENCFF001NCO.bam Lab custom mm9 released low read length ENCFF001NDX fastq fastq reads ENCSR000AHI Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2011-07-22 ENCODE sonication (generic) 150-350 1 1_1 36 single-ended 2138680522 Sherman Weissman, Yale eabcf2edd72c69edd067cc5f10446ec8 https://www.encodeproject.org/files/ENCFF001NDX/@@download/ENCFF001NDX.fastq.gz Illumina Genome Analyzer II archived s3://encode-public/2010/04/26/63bf263a-f7a8-41e3-a7a2-2e0a95283fc9/ENCFF001NDX.fastq.gz low read length ENCFF864BJY fastq fastq reads ENCSR563MPC Control ChIP-seq /worm-donors/ENCDO391BNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180609/'], '@type': ['Target', 'Item'], 'name': 'fax-1-celegans', 'label': 'fax-1', '@id': '/targets/fax-1-celegans/', 'title': 'fax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2ee4f948-1578-4171-a7dd-35b178cde470', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 601207559 Kevin White, UChicago e146a7e3e67721c98a120226f2a10ace https://www.encodeproject.org/files/ENCFF864BJY/@@download/ENCFF864BJY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/c42aafbe-9316-4393-a2d5-af2c86917da0/ENCFF864BJY.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF944UZF bam bam alignments ce10 ENCSR563MPC Control ChIP-seq /worm-donors/ENCDO391BNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180609/'], '@type': ['Target', 'Item'], 'name': 'fax-1-celegans', 'label': 'fax-1', '@id': '/targets/fax-1-celegans/', 'title': 'fax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2ee4f948-1578-4171-a7dd-35b178cde470', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF864BJY/ 855688365 Kevin White, UChicago 625d0309245787ceb0210008db4a21cb https://www.encodeproject.org/files/ENCFF944UZF/@@download/ENCFF944UZF.bam released s3://encode-public/2015/08/19/c8d58d40-592e-469d-aa9f-25a088893cbd/ENCFF944UZF.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF277WOY bigWig bigWig read-depth normalized signal ce10 ENCSR563MPC Control ChIP-seq /worm-donors/ENCDO391BNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180609/'], '@type': ['Target', 'Item'], 'name': 'fax-1-celegans', 'label': 'fax-1', '@id': '/targets/fax-1-celegans/', 'title': 'fax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2ee4f948-1578-4171-a7dd-35b178cde470', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF944UZF/ 9969031 Kevin White, UChicago f909e14e50ade4172f67ca423d5f973f https://www.encodeproject.org/files/ENCFF277WOY/@@download/ENCFF277WOY.bigWig released s3://encode-public/2015/10/02/2078c992-422a-49af-b2b8-f9c9b63c6e14/ENCFF277WOY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF505XKJ bigWig bigWig signal of unique reads ce10 ENCSR563MPC Control ChIP-seq /worm-donors/ENCDO391BNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180609/'], '@type': ['Target', 'Item'], 'name': 'fax-1-celegans', 'label': 'fax-1', '@id': '/targets/fax-1-celegans/', 'title': 'fax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2ee4f948-1578-4171-a7dd-35b178cde470', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF944UZF/ 9967886 Kevin White, UChicago e9dcbd8e876465f23c48e6703a1ac5bb https://www.encodeproject.org/files/ENCFF505XKJ/@@download/ENCFF505XKJ.bigWig released s3://encode-public/2015/10/02/c1b14a72-d12e-4cde-ace6-19e4f5ccdd45/ENCFF505XKJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF638MRW bam bam alignments ce11 ENCSR563MPC Control ChIP-seq /worm-donors/ENCDO391BNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180609/'], '@type': ['Target', 'Item'], 'name': 'fax-1-celegans', 'label': 'fax-1', '@id': '/targets/fax-1-celegans/', 'title': 'fax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2ee4f948-1578-4171-a7dd-35b178cde470', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF864BJY/ 856434194 Kevin White, UChicago 0807402cff590cfc51a81ae15189f38c https://www.encodeproject.org/files/ENCFF638MRW/@@download/ENCFF638MRW.bam released s3://encode-public/2016/01/17/3f0fee9d-0581-4d80-9e33-02a0f143a50a/ENCFF638MRW.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF767RNI bigWig bigWig signal of unique reads ce11 ENCSR563MPC Control ChIP-seq /worm-donors/ENCDO391BNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180609/'], '@type': ['Target', 'Item'], 'name': 'fax-1-celegans', 'label': 'fax-1', '@id': '/targets/fax-1-celegans/', 'title': 'fax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2ee4f948-1578-4171-a7dd-35b178cde470', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF638MRW/ 9966280 Kevin White, UChicago 616dc3d8a3bce402aa2bbb55500b41e0 https://www.encodeproject.org/files/ENCFF767RNI/@@download/ENCFF767RNI.bigWig released s3://encode-public/2016/02/03/eede4912-a4f6-430b-9a4b-e00118045559/ENCFF767RNI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF628HBS bigWig bigWig read-depth normalized signal ce11 ENCSR563MPC Control ChIP-seq /worm-donors/ENCDO391BNA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180609/'], '@type': ['Target', 'Item'], 'name': 'fax-1-celegans', 'label': 'fax-1', '@id': '/targets/fax-1-celegans/', 'title': 'fax-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2ee4f948-1578-4171-a7dd-35b178cde470', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF638MRW/ 9967261 Kevin White, UChicago b2aa8a13edc6fa85fbdb9b7ace8739be https://www.encodeproject.org/files/ENCFF628HBS/@@download/ENCFF628HBS.bigWig released s3://encode-public/2016/02/03/bb64ce15-490d-4a4a-ad41-55f756ca499d/ENCFF628HBS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF002BBC fastq fastq reads ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 single-ended 1481440509 Bradley Bernstein, Broad 8958b69b811dff758bd36ed5d9707d78 SRA:SRR4235691 https://www.encodeproject.org/files/ENCFF002BBC/@@download/ENCFF002BBC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/20/eda841f1-3c20-465b-98d9-1633308ef4f0/ENCFF002BBC.fastq.gz low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF002BBQ fastq fastq reads ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 single-ended 711024514 Bradley Bernstein, Broad 7c15a70e15595e5395ffcae708bc3092 SRA:SRR4235692 https://www.encodeproject.org/files/ENCFF002BBQ/@@download/ENCFF002BBQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/20/56d2ee33-dc7d-4e22-96dc-c5b802037195/ENCFF002BBQ.fastq.gz low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF471UAG bam bam unfiltered alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF002BBQ/, /files/ENCFF110MCL/ 930297426 ENCODE Processing Pipeline 763def408670950c11947acb9a0872f1 https://www.encodeproject.org/files/ENCFF471UAG/@@download/ENCFF471UAG.bam released s3://encode-public/2020/09/17/fbc8cdc7-abb6-49dd-93ab-830d717be225/ENCFF471UAG.bam ENCODE4 v1.5.1 GRCh38 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF060CLB bam bam alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF536ZKX/, /files/ENCFF788ZCC/, /files/ENCFF002BBC/ 1798250093 ENCODE Processing Pipeline 0f2d5bb7c67e8bdef74cb6f2fa7cc507 https://www.encodeproject.org/files/ENCFF060CLB/@@download/ENCFF060CLB.bam released s3://encode-public/2020/09/17/3f720574-57ac-4119-a088-d163d73791cb/ENCFF060CLB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF622XQQ bam bam unfiltered alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002BBQ/ 958211584 ENCODE Processing Pipeline 484e2c616dcf32cd86a5ebaeda511067 https://www.encodeproject.org/files/ENCFF622XQQ/@@download/ENCFF622XQQ.bam released s3://encode-public/2016/05/06/4abb7e2e-e731-4450-be9f-244846ec0def/ENCFF622XQQ.bam ENCODE3 GRCh38 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF012EJM bam bam alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002BBQ/ 666354825 ENCODE Processing Pipeline 1687d5330198903dd2405c1d257ce154 https://www.encodeproject.org/files/ENCFF012EJM/@@download/ENCFF012EJM.bam released s3://encode-public/2016/05/06/0b0b300a-bb8b-4092-8aab-5868ba5f8703/ENCFF012EJM.bam ENCODE3 GRCh38 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF536ZKX fastq fastq reads ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 76 single-ended 1662638217 Bradley Bernstein, Broad 8bec0fa4019579c3ad93d3d47c43d44d https://www.encodeproject.org/files/ENCFF536ZKX/@@download/ENCFF536ZKX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/05/d40ea389-5b5f-412a-8180-c2d67444a064/ENCFF536ZKX.fastq.gz low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF788ZCC fastq fastq reads ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 76 single-ended 1648185720 Bradley Bernstein, Broad 0aa0762176be8105239103e358ff2866 https://www.encodeproject.org/files/ENCFF788ZCC/@@download/ENCFF788ZCC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/05/0bc2bfd4-a9b7-446c-af13-436c3f0e4b0f/ENCFF788ZCC.fastq.gz low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF598FAS bam bam unfiltered alignments hg19 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002BBQ/ 953141147 ENCODE Processing Pipeline 5abe4b27875fe0b62abc0c3478c7a62b https://www.encodeproject.org/files/ENCFF598FAS/@@download/ENCFF598FAS.bam released s3://encode-public/2016/10/09/e915df4d-350d-4f81-a709-10c86fe9cf66/ENCFF598FAS.bam ENCODE3 hg19 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF265DDE bam bam alignments hg19 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002BBQ/ 666532178 ENCODE Processing Pipeline a92ae98fa984debc7d7a9ddc7e4da0ae https://www.encodeproject.org/files/ENCFF265DDE/@@download/ENCFF265DDE.bam released s3://encode-public/2016/10/09/bb192c1d-59b6-498b-9fa3-98f5a87ef9d5/ENCFF265DDE.bam ENCODE3 hg19 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF474SYV bam bam alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 /files/ENCFF536ZKX/, /files/ENCFF643CGH/, /files/ENCFF002BBC/, /files/ENCFF788ZCC/ 1647830554 ENCODE Processing Pipeline 928d7bcb3b4be87ac0c1ceea985ac066 https://www.encodeproject.org/files/ENCFF474SYV/@@download/ENCFF474SYV.bam released s3://encode-public/2016/10/14/c1ce218d-6db2-4446-a1c4-73342f480b57/ENCFF474SYV.bam ENCODE3 GRCh38 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF436UYS bam bam unfiltered alignments hg19 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 /files/ENCFF536ZKX/, /files/ENCFF807MUK/, /files/ENCFF002BBC/, /files/ENCFF788ZCC/ 3758638861 ENCODE Processing Pipeline 305001482fe71a2e668611e955fb20af https://www.encodeproject.org/files/ENCFF436UYS/@@download/ENCFF436UYS.bam released s3://encode-public/2016/10/14/0fe7ddb6-c346-4cc9-b3b8-c00a9fd00e66/ENCFF436UYS.bam ENCODE3 hg19 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF232ZFT bam bam unfiltered alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 /files/ENCFF536ZKX/, /files/ENCFF643CGH/, /files/ENCFF002BBC/, /files/ENCFF788ZCC/ 3785833765 ENCODE Processing Pipeline b5c56fcf781d513067163a83a8aaca28 https://www.encodeproject.org/files/ENCFF232ZFT/@@download/ENCFF232ZFT.bam released s3://encode-public/2016/10/14/ffe398d3-3f1e-4bb7-8a90-7fc2d76054c6/ENCFF232ZFT.bam ENCODE3 GRCh38 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF509ZPI bam bam alignments hg19 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 /files/ENCFF536ZKX/, /files/ENCFF807MUK/, /files/ENCFF002BBC/, /files/ENCFF788ZCC/ 1648381993 ENCODE Processing Pipeline b707975700a74e8b96637291ac7ba403 https://www.encodeproject.org/files/ENCFF509ZPI/@@download/ENCFF509ZPI.bam released s3://encode-public/2016/10/14/f26fedec-d802-4e65-a8aa-b10bea74cd57/ENCFF509ZPI.bam ENCODE3 hg19 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF305EWS bam bam unfiltered alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002BBQ/ 958211623 ENCODE Processing Pipeline 39b512cfb3653e8b062b11c5c0e0332f https://www.encodeproject.org/files/ENCFF305EWS/@@download/ENCFF305EWS.bam released s3://encode-public/2020/02/18/3910d718-2018-4b5b-ba30-9c1c98cf360c/ENCFF305EWS.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF011MOC bam bam alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002BBQ/ 666354864 ENCODE Processing Pipeline b0f56bb844aa385eb700f397852a5dda https://www.encodeproject.org/files/ENCFF011MOC/@@download/ENCFF011MOC.bam released s3://encode-public/2020/02/18/2a4cf89a-360b-4785-a14b-38b8394d056a/ENCFF011MOC.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF130KBJ bam bam unfiltered alignments hg19 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002BBQ/ 953141151 ENCODE Processing Pipeline 1fcb70c920245ce6e0814d2e8479fa05 https://www.encodeproject.org/files/ENCFF130KBJ/@@download/ENCFF130KBJ.bam released s3://encode-public/2020/06/23/6609db71-e655-479e-8e2d-b2b8e9fe5c84/ENCFF130KBJ.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF747UXD bam bam alignments hg19 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002BBQ/ 666532183 ENCODE Processing Pipeline f0a32a1b428d10023ae985400b9dbbc5 https://www.encodeproject.org/files/ENCFF747UXD/@@download/ENCFF747UXD.bam released s3://encode-public/2020/06/23/3008e925-fac7-4a62-936a-94d51e873a49/ENCFF747UXD.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF132BDT bam bam unfiltered alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF536ZKX/, /files/ENCFF788ZCC/, /files/ENCFF002BBC/ 3704051375 ENCODE Processing Pipeline 9b4b6b9438458dc4b2de9034076d0818 https://www.encodeproject.org/files/ENCFF132BDT/@@download/ENCFF132BDT.bam released s3://encode-public/2020/09/17/cfd49ec2-cae6-450d-b72c-afa4e22b0c71/ENCFF132BDT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF906FYY bam bam alignments GRCh38 ENCSR569IIN Control ChIP-seq /human-donors/ENCDO350AAA/ EFO:0005907 OCI-LY1 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 /files/ENCFF002BBQ/, /files/ENCFF110MCL/ 728955046 ENCODE Processing Pipeline ad249fef5cff7d98dcc2f3a758e449ee https://www.encodeproject.org/files/ENCFF906FYY/@@download/ENCFF906FYY.bam released s3://encode-public/2020/09/17/899c3813-a6c5-4a2a-b2b0-d60207de9159/ENCFF906FYY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF000WYQ bigWig bigWig signal hg19 ENCSR000EVC Control ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 574643277 Peggy Farnham, USC 772998cbd05452f699afeb42166bedbd https://www.encodeproject.org/files/ENCFF000WYQ/@@download/ENCFF000WYQ.bigWig archived s3://encode-public/2010/12/06/6874b755-71f7-46ce-a807-99e4606eaafa/ENCFF000WYQ.bigWig Lab custom hg19 archived low read length ENCFF000WYR bam bam alignments hg19 ENCSR000EVC Control ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 32 1666663669 Peggy Farnham, USC 10bb7882457828df18e9a2ec57d87a9c https://www.encodeproject.org/files/ENCFF000WYR/@@download/ENCFF000WYR.bam archived s3://encode-public/2010/12/06/c006fc5c-d10a-4ce5-a7de-00fde55557d2/ENCFF000WYR.bam Lab custom hg19 archived low read length ENCFF000WZC fastq fastq reads ENCSR000EVC Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 3465446070 Peggy Farnham, USC a0fb0cce6c9e0ba89d5317248c1adfce https://www.encodeproject.org/files/ENCFF000WZC/@@download/ENCFF000WZC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/02316d54-f9c8-492c-8c7a-05b9334342eb/ENCFF000WZC.fastq.gz low read length ENCFF914STU bam bam alignments GRCh38 ENCSR000EVC Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000WZC/, /files/ENCFF643CGH/ 2778145125 ENCODE Processing Pipeline 755b69668bf8448b20475bc4a23804a8 https://www.encodeproject.org/files/ENCFF914STU/@@download/ENCFF914STU.bam released s3://encode-public/2016/05/31/758d3a0f-8f92-4206-96da-4dc42981ed6f/ENCFF914STU.bam ENCODE3 GRCh38 archived low read length ENCFF299YGP bam bam unfiltered alignments GRCh38 ENCSR000EVC Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000WZC/, /files/ENCFF643CGH/ 4106306719 ENCODE Processing Pipeline d48de5a9ad6b9483b298d6e444cbfc73 https://www.encodeproject.org/files/ENCFF299YGP/@@download/ENCFF299YGP.bam released s3://encode-public/2016/05/31/a3b48378-53b4-42ca-ab33-537039c8c62f/ENCFF299YGP.bam ENCODE3 GRCh38 archived low read length ENCFF815QEQ bam bam unfiltered alignments GRCh38 ENCSR000EVC Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000WZC/ 4031644507 ENCODE Processing Pipeline 2cd20aad278def9d88471ec20efbd3db https://www.encodeproject.org/files/ENCFF815QEQ/@@download/ENCFF815QEQ.bam released s3://encode-public/2020/10/27/ddf62888-093d-4c08-9c88-b871c91c82c8/ENCFF815QEQ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF493KHG bam bam alignments GRCh38 ENCSR000EVC Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000WZC/ 3024126117 ENCODE Processing Pipeline 21830a2e1a2a0a54397a422d6fdc6002 https://www.encodeproject.org/files/ENCFF493KHG/@@download/ENCFF493KHG.bam released s3://encode-public/2020/10/27/7f46b334-9fff-4890-80a4-fca9e95b586e/ENCFF493KHG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF356EEK bam bam unfiltered alignments GRCh38 ENCSR000EVC Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WZC/, /files/ENCFF110MCL/ 3790686086 ENCODE Processing Pipeline b9f5bebbcfc0fdfd238368a01090835b https://www.encodeproject.org/files/ENCFF356EEK/@@download/ENCFF356EEK.bam released s3://encode-public/2021/02/04/d86114bb-eb8d-4d73-a731-f013e428e8ef/ENCFF356EEK.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF010PHQ bam bam alignments GRCh38 ENCSR000EVC Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WZC/, /files/ENCFF110MCL/ 2679094240 ENCODE Processing Pipeline 46f8b70d10c2a545fcd06cd2c3f10cfd https://www.encodeproject.org/files/ENCFF010PHQ/@@download/ENCFF010PHQ.bam released s3://encode-public/2021/02/04/84016122-43df-45eb-9d22-d6efb3ef343f/ENCFF010PHQ.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF001KNK bam bam alignments mm9 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KNX/ 408574634 Bing Ren, UCSD ee983fbbd5293110bff191971595f5f9 https://www.encodeproject.org/files/ENCFF001KNK/@@download/ENCFF001KNK.bam archived s3://encode-public/2011/12/23/fb19ce90-9959-4828-988a-e62c62519a4a/ENCFF001KNK.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KNN bam bam alignments mm9 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KNY/ 677316777 Bing Ren, UCSD 17c647f8a2a92a14300da8de1b49a769 https://www.encodeproject.org/files/ENCFF001KNN/@@download/ENCFF001KNN.bam archived s3://encode-public/2011/12/23/1ce93f86-a7fe-40d6-b208-70e5f284c4c5/ENCFF001KNN.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KNO bigWig bigWig signal mm9 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KNN/, /files/ENCFF001KNK/ 73792129 Bing Ren, UCSD 9bae0e9a1e05a2594431e2d301a4d788 https://www.encodeproject.org/files/ENCFF001KNO/@@download/ENCFF001KNO.bigWig archived s3://encode-public/2011/12/23/458038a6-c852-4350-9e29-ab9e300851e6/ENCFF001KNO.bigWig Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KNX fastq fastq reads ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 single-ended 870408468 Bing Ren, UCSD 0b4a7eb31fa79a735b1cf84977dc162f https://www.encodeproject.org/files/ENCFF001KNX/@@download/ENCFF001KNX.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/2a0cadb2-276a-489d-b6f4-f1b938adfda0/ENCFF001KNX.fastq.gz low read depth, low read length insufficient read depth ENCFF001KNY fastq fastq reads ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 single-ended 829631109 Bing Ren, UCSD 727586f44737f9e088fe23ca40c74a4e https://www.encodeproject.org/files/ENCFF001KNY/@@download/ENCFF001KNY.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/9f6c07e4-8880-4f1c-8063-90fceb5cfe11/ENCFF001KNY.fastq.gz low read depth, low read length insufficient read depth ENCFF321VSJ bam bam unfiltered alignments mm10-minimal ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KNY/, /files/ENCFF806TVZ/ 955518783 J. Michael Cherry, Stanford ad5d3701d2ccd89a90399c37ae0bbfd7 https://www.encodeproject.org/files/ENCFF321VSJ/@@download/ENCFF321VSJ.bam archived s3://encode-public/2015/02/04/3ebbfd71-abb2-4615-a04c-60717a60ebd1/ENCFF321VSJ.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF948LSP bam bam unfiltered alignments mm10-minimal ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KNX/, /files/ENCFF806TVZ/ 957554218 J. Michael Cherry, Stanford 6ee7ada8f417191cd2a7ec2738a00efa https://www.encodeproject.org/files/ENCFF948LSP/@@download/ENCFF948LSP.bam archived s3://encode-public/2015/02/04/47dfc59c-3231-424a-90c7-46c0e80bd98a/ENCFF948LSP.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF465JMB bam bam alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KNY/ 512864755 ENCODE Processing Pipeline 31d9a2fa334175e48aa6073192ed0a2e https://www.encodeproject.org/files/ENCFF465JMB/@@download/ENCFF465JMB.bam released s3://encode-public/2016/04/28/6d694037-88f6-47cb-b646-9d56bb907620/ENCFF465JMB.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF515GCB bam bam alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KNX/ 416651403 ENCODE Processing Pipeline a40d3aa48f5392616ea46d81577dca9d https://www.encodeproject.org/files/ENCFF515GCB/@@download/ENCFF515GCB.bam released s3://encode-public/2016/04/28/d46f68d7-2fb5-427f-bb92-8d79a27da55d/ENCFF515GCB.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF598XHF bam bam unfiltered alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KNY/ 957140221 ENCODE Processing Pipeline e70503ce593dd6478457c880271c43f1 https://www.encodeproject.org/files/ENCFF598XHF/@@download/ENCFF598XHF.bam released s3://encode-public/2016/07/06/9da4f355-989d-4792-8ede-d0dd34114c61/ENCFF598XHF.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF722ZOT bam bam unfiltered alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KNX/ 958496219 ENCODE Processing Pipeline 7c521f9307ed5fbffde92f95bcdbcd18 https://www.encodeproject.org/files/ENCFF722ZOT/@@download/ENCFF722ZOT.bam released s3://encode-public/2016/07/06/6cecd5c4-3185-4a4f-b55a-7addb9982a21/ENCFF722ZOT.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF756QZH bam bam unfiltered alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KNX/ 945679431 ENCODE Processing Pipeline dfe6050a23195d5a3e0096f1b732d4ee https://www.encodeproject.org/files/ENCFF756QZH/@@download/ENCFF756QZH.bam released s3://encode-public/2020/10/12/1cccaa7b-77eb-45fc-8a83-7282506e26ba/ENCFF756QZH.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF546TPO bam bam unfiltered alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KNY/ 937126031 ENCODE Processing Pipeline c630a4c90e7b6d11d2c49d261ef3b40d https://www.encodeproject.org/files/ENCFF546TPO/@@download/ENCFF546TPO.bam released s3://encode-public/2020/10/12/985f9eb7-e494-445b-b1a9-002a8b0d3f29/ENCFF546TPO.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF834LUQ bam bam alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KNX/ 442525177 ENCODE Processing Pipeline 936513bc8b32a884c0a714081aeba05a https://www.encodeproject.org/files/ENCFF834LUQ/@@download/ENCFF834LUQ.bam released s3://encode-public/2020/10/12/f624683e-1fad-43ac-8f51-ca3408620da4/ENCFF834LUQ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF487NVD bam bam alignments mm10 ENCSR000CAX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KNY/ 556424291 ENCODE Processing Pipeline a094870e64aa93419267e8f24ef575b9 https://www.encodeproject.org/files/ENCFF487NVD/@@download/ENCFF487NVD.bam released s3://encode-public/2020/10/12/ac9775ae-5f27-4449-82fa-0d76630671bb/ENCFF487NVD.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF485MGN fastq fastq reads ENCSR064VSR Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 283949435 Kevin White, UChicago a3f1aab1537d9a38033a49c44ffc151d https://www.encodeproject.org/files/ENCFF485MGN/@@download/ENCFF485MGN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/a99bb75d-7404-4d59-82ab-dba2c1a1f2ee/ENCFF485MGN.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF218RLH bam bam alignments ce10 ENCSR064VSR Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF485MGN/ 406393925 Kevin White, UChicago e33298d28b97c41e2ff73c8a6a8b1161 https://www.encodeproject.org/files/ENCFF218RLH/@@download/ENCFF218RLH.bam released s3://encode-public/2015/08/07/d38c17d7-703a-43c8-a1ec-3d5e3fcba9a9/ENCFF218RLH.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF619XBK bigWig bigWig signal of unique reads ce10 ENCSR064VSR Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF218RLH/ 10053021 Kevin White, UChicago fd77ffbf042f565410a0f8a021e8e767 https://www.encodeproject.org/files/ENCFF619XBK/@@download/ENCFF619XBK.bigWig released s3://encode-public/2015/10/02/b6cdbcff-6ac0-4f78-8a6a-d8032d2efaf0/ENCFF619XBK.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF397GKV bigWig bigWig read-depth normalized signal ce10 ENCSR064VSR Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF218RLH/ 9984576 Kevin White, UChicago db72c52823b2f1aed6a59bf0f60143f8 https://www.encodeproject.org/files/ENCFF397GKV/@@download/ENCFF397GKV.bigWig released s3://encode-public/2015/10/02/e17ec569-6b71-48ce-9091-8ec481eb2f1f/ENCFF397GKV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF564YEE bam bam alignments ce11 ENCSR064VSR Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF485MGN/ 406721208 Kevin White, UChicago f6808c15f4708a7706af8bc85dddfbea https://www.encodeproject.org/files/ENCFF564YEE/@@download/ENCFF564YEE.bam released s3://encode-public/2016/01/20/abd1901b-9970-489d-8970-a56edec025be/ENCFF564YEE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF570KYG bigWig bigWig signal of unique reads ce11 ENCSR064VSR Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF564YEE/ 10049726 Kevin White, UChicago 92d9d5f78f486ea1cecd2950bdafeaaf https://www.encodeproject.org/files/ENCFF570KYG/@@download/ENCFF570KYG.bigWig released s3://encode-public/2016/02/03/b02f24d8-1fa6-4c08-a821-3c4d35c70cbc/ENCFF570KYG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF706PJK bigWig bigWig read-depth normalized signal ce11 ENCSR064VSR Control ChIP-seq /worm-donors/ENCDO771ZYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176157/'], '@type': ['Target', 'Item'], 'name': 'unc-86-celegans', 'label': 'unc-86', '@id': '/targets/unc-86-celegans/', 'title': 'unc-86 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '35c7ccbe-ff31-4805-b698-9168b03f4094', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF564YEE/ 9978934 Kevin White, UChicago ae28c6bfb6d262ea2ed2d2257f03a4ee https://www.encodeproject.org/files/ENCFF706PJK/@@download/ENCFF706PJK.bigWig released s3://encode-public/2016/02/03/e801fa8a-6c57-466f-ad40-92d2d1f2a431/ENCFF706PJK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF454IKV fastq fastq reads ENCSR395ZBR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF740JRL/ 2554812294 Michael Snyder, Stanford 7373609b681560aa8daaec7b0cf31077 https://www.encodeproject.org/files/ENCFF454IKV/@@download/ENCFF454IKV.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/11/26b011fd-c7e5-4277-bc29-be3bb7530866/ENCFF454IKV.fastq.gz mild to moderate bottlenecking ENCFF740JRL fastq fastq reads ENCSR395ZBR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF454IKV/ 2643995611 Michael Snyder, Stanford c86f4df0b6212d528f55c329ff1c65a5 https://www.encodeproject.org/files/ENCFF740JRL/@@download/ENCFF740JRL.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/11/6f16d9dd-d8a0-4c1d-bd4c-610f732ae076/ENCFF740JRL.fastq.gz mild to moderate bottlenecking ENCFF327LKY bam bam unfiltered alignments GRCh38 ENCSR395ZBR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF740JRL/, /files/ENCFF454IKV/, /files/ENCFF110MCL/ 4956706452 ENCODE Processing Pipeline 1d5e5b18b871462c3733fede48e18c8b https://www.encodeproject.org/files/ENCFF327LKY/@@download/ENCFF327LKY.bam released s3://encode-public/2021/10/22/25f14621-3a05-4175-a73e-cd2261256b46/ENCFF327LKY.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF132QAO bam bam alignments GRCh38 ENCSR395ZBR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF740JRL/, /files/ENCFF454IKV/, /files/ENCFF110MCL/ 3467824708 ENCODE Processing Pipeline 102b61132207c79f40a112dfb774489f https://www.encodeproject.org/files/ENCFF132QAO/@@download/ENCFF132QAO.bam released s3://encode-public/2021/10/22/ed6aae2f-4360-4b5d-a1cb-2f674469efcf/ENCFF132QAO.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF497UKK fastq fastq reads ENCSR654GXW Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF945QGM/ 2789347684 Michael Snyder, Stanford 81aa4d22a75093b8d078eb9dc18c596f SRA:SRR16813429 https://www.encodeproject.org/files/ENCFF497UKK/@@download/ENCFF497UKK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/03/22/b077527a-e348-4c30-b31a-9a3d58fec6dd/ENCFF497UKK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF945QGM fastq fastq reads ENCSR654GXW Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF497UKK/ 2884878670 Michael Snyder, Stanford a4aa22b7d4c0214d711029debaf2e3a4 SRA:SRR16813429 https://www.encodeproject.org/files/ENCFF945QGM/@@download/ENCFF945QGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2021/03/22/b000da94-8d8a-4712-8a5a-053762779ff9/ENCFF945QGM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF426MFK bam bam unfiltered alignments GRCh38 ENCSR654GXW Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF945QGM/, /files/ENCFF110MCL/, /files/ENCFF497UKK/ 5098141946 ENCODE Processing Pipeline 9c3c4b182ed39210406b70c90d7bc811 https://www.encodeproject.org/files/ENCFF426MFK/@@download/ENCFF426MFK.bam released s3://encode-public/2021/05/27/0df5505f-cf13-4b84-8c2a-96de1319f552/ENCFF426MFK.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF872BOS bam bam alignments GRCh38 ENCSR654GXW Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-31 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF945QGM/, /files/ENCFF110MCL/, /files/ENCFF497UKK/ 3874925807 ENCODE Processing Pipeline 4b8292d3cddf04d771a65214a0bef4b9 https://www.encodeproject.org/files/ENCFF872BOS/@@download/ENCFF872BOS.bam released s3://encode-public/2021/05/27/47d92107-761d-449e-b4fd-2057b1ab26f9/ENCFF872BOS.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF326FFM fastq fastq reads ENCSR837BBL Control ChIP-seq /fly-donors/ENCDO393XGI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40332/'], '@type': ['Target', 'Item'], 'name': 'CG10565-dmelanogaster', 'label': 'CG10565', '@id': '/targets/CG10565-dmelanogaster/', 'title': 'CG10565 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '69b44565-6d24-436e-ad7f-efcd212e0a0b', 'status': 'released'} dm3 3L 21108160 21129912 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 443916941 Kevin White, UChicago 64eb06fb700faad26acb60441df0e386 https://www.encodeproject.org/files/ENCFF326FFM/@@download/ENCFF326FFM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/9cd097df-4629-4fae-897f-48399340fd02/ENCFF326FFM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF124CEH bam bam alignments dm3 ENCSR837BBL Control ChIP-seq /fly-donors/ENCDO393XGI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40332/'], '@type': ['Target', 'Item'], 'name': 'CG10565-dmelanogaster', 'label': 'CG10565', '@id': '/targets/CG10565-dmelanogaster/', 'title': 'CG10565 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '69b44565-6d24-436e-ad7f-efcd212e0a0b', 'status': 'released'} dm3 3L 21108160 21129912 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF326FFM/ 641672024 Kevin White, UChicago cb84f57601f831c8bbfe6972fae4257a https://www.encodeproject.org/files/ENCFF124CEH/@@download/ENCFF124CEH.bam released s3://encode-public/2015/08/03/a3293985-4665-4647-a987-c10e7556561c/ENCFF124CEH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF183QLR bigWig bigWig signal of unique reads dm3 ENCSR837BBL Control ChIP-seq /fly-donors/ENCDO393XGI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40332/'], '@type': ['Target', 'Item'], 'name': 'CG10565-dmelanogaster', 'label': 'CG10565', '@id': '/targets/CG10565-dmelanogaster/', 'title': 'CG10565 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '69b44565-6d24-436e-ad7f-efcd212e0a0b', 'status': 'released'} dm3 3L 21108160 21129912 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF124CEH/ 15244599 Kevin White, UChicago 9f4b9b99884b933524064dccf6d707d4 https://www.encodeproject.org/files/ENCFF183QLR/@@download/ENCFF183QLR.bigWig released s3://encode-public/2015/10/05/a37929e3-cd22-4150-bfd7-6d05c8796dac/ENCFF183QLR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF496WAO bigWig bigWig read-depth normalized signal dm3 ENCSR837BBL Control ChIP-seq /fly-donors/ENCDO393XGI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40332/'], '@type': ['Target', 'Item'], 'name': 'CG10565-dmelanogaster', 'label': 'CG10565', '@id': '/targets/CG10565-dmelanogaster/', 'title': 'CG10565 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '69b44565-6d24-436e-ad7f-efcd212e0a0b', 'status': 'released'} dm3 3L 21108160 21129912 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF124CEH/ 15254131 Kevin White, UChicago 3008a3e6b78203b85b374dc440ee2b2c https://www.encodeproject.org/files/ENCFF496WAO/@@download/ENCFF496WAO.bigWig released s3://encode-public/2015/10/05/cc5e7233-fc2c-41ed-84ba-d79681aa4f7a/ENCFF496WAO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF987HZN bam bam alignments dm6 ENCSR837BBL Control ChIP-seq /fly-donors/ENCDO393XGI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40332/'], '@type': ['Target', 'Item'], 'name': 'CG10565-dmelanogaster', 'label': 'CG10565', '@id': '/targets/CG10565-dmelanogaster/', 'title': 'CG10565 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '69b44565-6d24-436e-ad7f-efcd212e0a0b', 'status': 'released'} dm3 3L 21108160 21129912 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF326FFM/ 639674034 Kevin White, UChicago 949924406e6bfba76a9d0f94efb67771 https://www.encodeproject.org/files/ENCFF987HZN/@@download/ENCFF987HZN.bam released s3://encode-public/2016/04/20/59741f7f-0655-45bc-bbd4-92a80b7056d7/ENCFF987HZN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF544KQF bigWig bigWig signal of unique reads dm6 ENCSR837BBL Control ChIP-seq /fly-donors/ENCDO393XGI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40332/'], '@type': ['Target', 'Item'], 'name': 'CG10565-dmelanogaster', 'label': 'CG10565', '@id': '/targets/CG10565-dmelanogaster/', 'title': 'CG10565 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '69b44565-6d24-436e-ad7f-efcd212e0a0b', 'status': 'released'} dm3 3L 21108160 21129912 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF987HZN/ 17367782 Kevin White, UChicago dcfec92d6855333e029cf69ce20e57e2 https://www.encodeproject.org/files/ENCFF544KQF/@@download/ENCFF544KQF.bigWig released s3://encode-public/2016/06/21/fdecf76e-9d82-4692-b00d-1311afc106d3/ENCFF544KQF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF248KBP bigWig bigWig read-depth normalized signal dm6 ENCSR837BBL Control ChIP-seq /fly-donors/ENCDO393XGI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40332/'], '@type': ['Target', 'Item'], 'name': 'CG10565-dmelanogaster', 'label': 'CG10565', '@id': '/targets/CG10565-dmelanogaster/', 'title': 'CG10565 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '69b44565-6d24-436e-ad7f-efcd212e0a0b', 'status': 'released'} dm3 3L 21108160 21129912 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF987HZN/ 17378183 Kevin White, UChicago 618965789823b072494bf72e362cba69 https://www.encodeproject.org/files/ENCFF248KBP/@@download/ENCFF248KBP.bigWig released s3://encode-public/2016/06/21/568cfd22-f38c-4f07-8f8b-8734c1a72cb1/ENCFF248KBP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HLT bam bam alignments hg19 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HME/ 1030432484 John Stamatoyannopoulos, UW 61678ad164b764b61fd09a6700d0b9f4 https://www.encodeproject.org/files/ENCFF001HLT/@@download/ENCFF001HLT.bam archived s3://encode-public/2011/06/25/aebc0925-f79a-4b67-a274-ef9a8a312df5/ENCFF001HLT.bam Lab custom hg19 archived low read length ENCFF001HLU bigWig bigWig raw signal hg19 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HLT/ 205945880 John Stamatoyannopoulos, UW 2249edc3b292b818de1156389d8ce9b5 https://www.encodeproject.org/files/ENCFF001HLU/@@download/ENCFF001HLU.bigWig archived s3://encode-public/2011/06/25/0070d319-651f-438c-8fdf-82649632356f/ENCFF001HLU.bigWig Lab custom hg19 archived low read length ENCFF001HME fastq fastq reads ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1077271560 John Stamatoyannopoulos, UW b2dad44d86cb9677ce8bb7ca19b554c8 https://www.encodeproject.org/files/ENCFF001HME/@@download/ENCFF001HME.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/0a2e4504-8861-4c91-b33a-ac38e03da564/ENCFF001HME.fastq.gz low read length ENCFF594FEE bam bam unfiltered alignments GRCh38 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HME/ 1295483396 ENCODE Processing Pipeline e09cd0c67583fcc723acd22562242b92 https://www.encodeproject.org/files/ENCFF594FEE/@@download/ENCFF594FEE.bam released s3://encode-public/2016/08/09/7a3410a0-9d56-4481-89cf-fe1f0c96ef6d/ENCFF594FEE.bam ENCODE3 GRCh38 archived low read length ENCFF040CVQ bam bam alignments GRCh38 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HME/ 949210092 ENCODE Processing Pipeline 390366400ea2929fb269ddf69aee10e1 https://www.encodeproject.org/files/ENCFF040CVQ/@@download/ENCFF040CVQ.bam released s3://encode-public/2016/08/09/1e054407-0f60-4a5c-b6be-87a0d2422a69/ENCFF040CVQ.bam ENCODE3 GRCh38 archived low read length ENCFF958SGL bam bam unfiltered alignments hg19 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HME/ 1289984562 ENCODE Processing Pipeline 76ef40bd8fb090e447573dd14fad55c2 https://www.encodeproject.org/files/ENCFF958SGL/@@download/ENCFF958SGL.bam released s3://encode-public/2016/11/13/4696f354-481b-4e6a-9def-cd6634e92a96/ENCFF958SGL.bam ENCODE3 hg19 archived low read length ENCFF052OHY bam bam alignments hg19 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HME/ 949342431 ENCODE Processing Pipeline c3806f695f01418fe2946bc49edbd68c https://www.encodeproject.org/files/ENCFF052OHY/@@download/ENCFF052OHY.bam released s3://encode-public/2016/11/13/6903a172-9ed0-4742-b74c-e2c1050f2d92/ENCFF052OHY.bam ENCODE3 hg19 archived low read length ENCFF264SJR bam bam unfiltered alignments GRCh38 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HME/, /files/ENCFF110MCL/ 1273117577 ENCODE Processing Pipeline d95d8374dc6a882df278c3f06e8cdd8a https://www.encodeproject.org/files/ENCFF264SJR/@@download/ENCFF264SJR.bam released s3://encode-public/2020/09/03/9b501577-d1e7-49cd-afd5-a397ba4a6de8/ENCFF264SJR.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF638MIK bam bam alignments GRCh38 ENCSR000DTP Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HME/, /files/ENCFF110MCL/ 1024074936 ENCODE Processing Pipeline 79483236da4087d7dfdfa2c8688cc46a https://www.encodeproject.org/files/ENCFF638MIK/@@download/ENCFF638MIK.bam released s3://encode-public/2020/09/03/8cfb1fc4-4ec3-4868-9cec-1f8a0e94bedd/ENCFF638MIK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF436UGU fastq fastq reads ENCSR030ZQQ Control ChIP-seq /fly-donors/ENCDO485GOI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40962/'], '@type': ['Target', 'Item'], 'name': 'grn-dmelanogaster', 'label': 'grn', '@id': '/targets/grn-dmelanogaster/', 'title': 'grn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7960db3a-f391-4398-a01d-040e9de1bea0', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 948857473 Kevin White, UChicago fdf2d66b059adf88089e340bf3dbf565 https://www.encodeproject.org/files/ENCFF436UGU/@@download/ENCFF436UGU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/20/ab3deb9d-0b62-4b31-9224-fde2b0cd5045/ENCFF436UGU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF197CII bam bam alignments dm3 ENCSR030ZQQ Control ChIP-seq /fly-donors/ENCDO485GOI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40962/'], '@type': ['Target', 'Item'], 'name': 'grn-dmelanogaster', 'label': 'grn', '@id': '/targets/grn-dmelanogaster/', 'title': 'grn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7960db3a-f391-4398-a01d-040e9de1bea0', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF436UGU/, /files/ENCFF059UHX/ 1149078650 Kevin White, UChicago 2b7f2fc1fa80481a5ca9ad591665a198 https://www.encodeproject.org/files/ENCFF197CII/@@download/ENCFF197CII.bam released s3://encode-public/2017/01/03/832d168b-b0c9-4e57-b49c-0c15fed51953/ENCFF197CII.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF307IHU bam bam alignments dm6 ENCSR030ZQQ Control ChIP-seq /fly-donors/ENCDO485GOI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40962/'], '@type': ['Target', 'Item'], 'name': 'grn-dmelanogaster', 'label': 'grn', '@id': '/targets/grn-dmelanogaster/', 'title': 'grn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7960db3a-f391-4398-a01d-040e9de1bea0', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF436UGU/, /files/ENCFF479RCH/ 1141298740 Kevin White, UChicago 239a07029867608b8603fbe0bcd63833 https://www.encodeproject.org/files/ENCFF307IHU/@@download/ENCFF307IHU.bam released s3://encode-public/2017/01/03/78c3dddf-0fb8-4649-85b7-46e3b58041b5/ENCFF307IHU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF656GVC bigWig bigWig signal of unique reads dm3 ENCSR030ZQQ Control ChIP-seq /fly-donors/ENCDO485GOI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40962/'], '@type': ['Target', 'Item'], 'name': 'grn-dmelanogaster', 'label': 'grn', '@id': '/targets/grn-dmelanogaster/', 'title': 'grn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7960db3a-f391-4398-a01d-040e9de1bea0', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF197CII/ 15338718 Kevin White, UChicago b871d48e5246fd90576526d7b663d6d2 https://www.encodeproject.org/files/ENCFF656GVC/@@download/ENCFF656GVC.bigWig released s3://encode-public/2017/01/03/5551d87d-ef59-403c-8c55-cbd6b0dfcd90/ENCFF656GVC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF468QAX bigWig bigWig read-depth normalized signal dm3 ENCSR030ZQQ Control ChIP-seq /fly-donors/ENCDO485GOI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40962/'], '@type': ['Target', 'Item'], 'name': 'grn-dmelanogaster', 'label': 'grn', '@id': '/targets/grn-dmelanogaster/', 'title': 'grn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7960db3a-f391-4398-a01d-040e9de1bea0', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF197CII/ 15357559 Kevin White, UChicago e2115d5b028e5259a24aef27fa7dec54 https://www.encodeproject.org/files/ENCFF468QAX/@@download/ENCFF468QAX.bigWig released s3://encode-public/2017/01/03/5290ad79-47a4-41f3-9f63-9b3216632e03/ENCFF468QAX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF779XAV bigWig bigWig read-depth normalized signal dm6 ENCSR030ZQQ Control ChIP-seq /fly-donors/ENCDO485GOI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40962/'], '@type': ['Target', 'Item'], 'name': 'grn-dmelanogaster', 'label': 'grn', '@id': '/targets/grn-dmelanogaster/', 'title': 'grn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7960db3a-f391-4398-a01d-040e9de1bea0', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF307IHU/ 17465045 Kevin White, UChicago 8df64f1302eb713552fe46d44bad0d6c https://www.encodeproject.org/files/ENCFF779XAV/@@download/ENCFF779XAV.bigWig released s3://encode-public/2017/01/04/47ca2dff-484c-4277-9339-9f93abfc41e2/ENCFF779XAV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF710GKL bigWig bigWig signal of unique reads dm6 ENCSR030ZQQ Control ChIP-seq /fly-donors/ENCDO485GOI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40962/'], '@type': ['Target', 'Item'], 'name': 'grn-dmelanogaster', 'label': 'grn', '@id': '/targets/grn-dmelanogaster/', 'title': 'grn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7960db3a-f391-4398-a01d-040e9de1bea0', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF307IHU/ 17440788 Kevin White, UChicago 2e20e4faed337329fb6c170c3cba1edf https://www.encodeproject.org/files/ENCFF710GKL/@@download/ENCFF710GKL.bigWig released s3://encode-public/2017/01/04/ff84cee3-0fc3-48cb-a92d-88ceb5a7bd44/ENCFF710GKL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF428EZQ bam bam unfiltered alignments hg19 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECV/ 1899884215 ENCODE Processing Pipeline 3d13a812fd2ce40fa6f36e74794777f2 https://www.encodeproject.org/files/ENCFF428EZQ/@@download/ENCFF428EZQ.bam released s3://encode-public/2018/02/21/658b6b81-a14f-45f2-a4f1-f361db104606/ENCFF428EZQ.bam ENCODE3 hg19 archived low read length ENCFF943UCO bam bam unfiltered alignments hg19 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECT/ 1902135078 ENCODE Processing Pipeline c99711d5b2a296fd0e7f6e3b3c1bb7ed https://www.encodeproject.org/files/ENCFF943UCO/@@download/ENCFF943UCO.bam released s3://encode-public/2018/02/21/85586428-790a-405d-8e17-d8f1a690ed5c/ENCFF943UCO.bam ENCODE3 hg19 archived low read length ENCFF002ECT fastq fastq reads ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 single-ended 1383038084 Michael Snyder, Stanford b5f99ad62bfb5cc41e6ee9c6a5c3cee7 SRA:SRR8660059 https://www.encodeproject.org/files/ENCFF002ECT/@@download/ENCFF002ECT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/c6cfaeee-5da7-4660-a0d8-506225e58c8f/ENCFF002ECT.fastq.gz low read length ENCFF002ECV fastq fastq reads ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 single-ended 1376969025 Michael Snyder, Stanford 15efbc2f14f6e1249fe1163547f55fa4 SRA:SRR8660060 https://www.encodeproject.org/files/ENCFF002ECV/@@download/ENCFF002ECV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/fc436acd-4feb-44bd-a7ef-bec4a1b3113c/ENCFF002ECV.fastq.gz low read length ENCFF534QDT bam bam alignments hg19 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECT/ 1394204286 ENCODE Processing Pipeline b42e62b8a82f720f9df1fa6e668518be https://www.encodeproject.org/files/ENCFF534QDT/@@download/ENCFF534QDT.bam released s3://encode-public/2015/10/29/e4b90fdf-ba5c-446a-9375-c6671d7d50ba/ENCFF534QDT.bam ENCODE3 hg19 archived low read length ENCFF580OFB bam bam alignments hg19 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECV/ 1407456539 ENCODE Processing Pipeline 0125cddf850e5189d0df56b813624b95 https://www.encodeproject.org/files/ENCFF580OFB/@@download/ENCFF580OFB.bam released s3://encode-public/2015/10/29/87e58c49-afca-4fdc-a5d6-a3ce5ff317ee/ENCFF580OFB.bam ENCODE3 hg19 archived low read length ENCFF155SHG bam bam unfiltered alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECV/ 1908171012 ENCODE Processing Pipeline dbc7d5768b64f0f7ae0059ed60784dbd https://www.encodeproject.org/files/ENCFF155SHG/@@download/ENCFF155SHG.bam released s3://encode-public/2016/05/06/8df16495-c841-4ee3-b80c-865f48d27d8e/ENCFF155SHG.bam ENCODE3 GRCh38 archived low read length ENCFF914PQG bam bam unfiltered alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECT/ 1910199440 ENCODE Processing Pipeline 4cf60de813a44a58a5baf135a47dad6d https://www.encodeproject.org/files/ENCFF914PQG/@@download/ENCFF914PQG.bam released s3://encode-public/2016/05/06/09c004cb-9d19-49bd-89ed-f09ce095dd2d/ENCFF914PQG.bam ENCODE3 GRCh38 archived low read length ENCFF372IUC bam bam alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECV/ 1406992654 ENCODE Processing Pipeline f7f81b51935173c47d22e3bfb13dd8e6 https://www.encodeproject.org/files/ENCFF372IUC/@@download/ENCFF372IUC.bam released s3://encode-public/2016/05/06/85f8e9ca-4c05-4fd6-be20-97472f69cd68/ENCFF372IUC.bam ENCODE3 GRCh38 archived low read length ENCFF828HXP bam bam alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECT/ 1393827995 ENCODE Processing Pipeline 72805b0f8b97038771c8c7416edad65a https://www.encodeproject.org/files/ENCFF828HXP/@@download/ENCFF828HXP.bam released s3://encode-public/2016/05/06/0a120565-b4e8-43fe-a2e0-818cd7c779d2/ENCFF828HXP.bam ENCODE3 GRCh38 archived low read length ENCFF813JSR bam bam unfiltered alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002ECT/ 1859343759 ENCODE Processing Pipeline fa8539d8f73ad8fcf0d3a2cdc9ffc20d https://www.encodeproject.org/files/ENCFF813JSR/@@download/ENCFF813JSR.bam released s3://encode-public/2020/06/13/1ccbe3a9-4a35-426a-afd8-76fad60591b4/ENCFF813JSR.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF785OTL bam bam unfiltered alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF002ECV/ 1857438252 ENCODE Processing Pipeline 9e4ff085b29843f2732c922c610e9204 https://www.encodeproject.org/files/ENCFF785OTL/@@download/ENCFF785OTL.bam released s3://encode-public/2020/06/13/5534c6f4-c7af-4e73-8cb3-2d670cdfd341/ENCFF785OTL.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF400ULE bam bam alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF002ECV/ 1512019176 ENCODE Processing Pipeline e554b1aae4d54a35b8e4149f5e834892 https://www.encodeproject.org/files/ENCFF400ULE/@@download/ENCFF400ULE.bam released s3://encode-public/2020/06/13/dfc323a3-6cc5-4fcb-a6d5-d36f103fcd34/ENCFF400ULE.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF495AJM bam bam alignments GRCh38 ENCSR633XNG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF002ECT/ 1498346704 ENCODE Processing Pipeline 88af63680e8252ce4a421ca97c915322 https://www.encodeproject.org/files/ENCFF495AJM/@@download/ENCFF495AJM.bam released s3://encode-public/2020/06/13/1c9ce05e-b920-4da2-8664-6645de5e7334/ENCFF495AJM.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF103TAT fastq fastq reads ENCSR779STX Control ChIP-seq /worm-donors/ENCDO699VKF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176090/'], '@type': ['Target', 'Item'], 'name': 'snu-23-celegans', 'label': 'snu-23', '@id': '/targets/snu-23-celegans/', 'title': 'snu-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecaa3e6b-6996-42d7-9a61-2dda65cbf6ad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 818460598 Kevin White, UChicago 4f1a8cadd835ebd450bc1034946cc9b7 https://www.encodeproject.org/files/ENCFF103TAT/@@download/ENCFF103TAT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/e6b72c90-8f9d-4683-a6f1-d75a81c885f9/ENCFF103TAT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF817QET bam bam alignments ce10 ENCSR779STX Control ChIP-seq /worm-donors/ENCDO699VKF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 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UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176090/'], '@type': ['Target', 'Item'], 'name': 'snu-23-celegans', 'label': 'snu-23', '@id': '/targets/snu-23-celegans/', 'title': 'snu-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecaa3e6b-6996-42d7-9a61-2dda65cbf6ad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF817QET/ 10022408 Kevin White, UChicago ab9e6ea0d3c55b66561e40d0cef4f625 https://www.encodeproject.org/files/ENCFF130MEZ/@@download/ENCFF130MEZ.bigWig released s3://encode-public/2015/10/02/7f301b0f-600d-46d8-af0a-3f191eab2e30/ENCFF130MEZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF346KDS bigWig bigWig signal of unique reads ce10 ENCSR779STX Control ChIP-seq /worm-donors/ENCDO699VKF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176090/'], '@type': ['Target', 'Item'], 'name': 'snu-23-celegans', 'label': 'snu-23', '@id': '/targets/snu-23-celegans/', 'title': 'snu-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecaa3e6b-6996-42d7-9a61-2dda65cbf6ad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF817QET/ 9994013 Kevin White, UChicago 0ca31e6567067105039266a7410f1f32 https://www.encodeproject.org/files/ENCFF346KDS/@@download/ENCFF346KDS.bigWig released s3://encode-public/2015/10/02/c9afd3b9-b43d-40c3-8e72-d89c74445653/ENCFF346KDS.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF699RXA bam bam alignments ce11 ENCSR779STX Control ChIP-seq /worm-donors/ENCDO699VKF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176090/'], '@type': ['Target', 'Item'], 'name': 'snu-23-celegans', 'label': 'snu-23', '@id': '/targets/snu-23-celegans/', 'title': 'snu-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecaa3e6b-6996-42d7-9a61-2dda65cbf6ad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF103TAT/ 1154359451 Kevin White, UChicago 7fba8fa04891baf1179dc6b9cceaf1ce https://www.encodeproject.org/files/ENCFF699RXA/@@download/ENCFF699RXA.bam released s3://encode-public/2016/01/20/ce5a5f49-b772-4bdb-8d3d-9b3072f1a39f/ENCFF699RXA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF896NXU bigWig bigWig signal of unique reads ce11 ENCSR779STX Control ChIP-seq /worm-donors/ENCDO699VKF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176090/'], '@type': ['Target', 'Item'], 'name': 'snu-23-celegans', 'label': 'snu-23', '@id': '/targets/snu-23-celegans/', 'title': 'snu-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecaa3e6b-6996-42d7-9a61-2dda65cbf6ad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF699RXA/ 9993069 Kevin White, UChicago 82c489634ea7f24d3e4b1e12b5f6c999 https://www.encodeproject.org/files/ENCFF896NXU/@@download/ENCFF896NXU.bigWig released s3://encode-public/2016/02/03/0e9d35be-a8ce-42e4-b7bb-3f104b3eee38/ENCFF896NXU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF728NBU bigWig bigWig read-depth normalized signal ce11 ENCSR779STX Control ChIP-seq /worm-donors/ENCDO699VKF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176090/'], '@type': ['Target', 'Item'], 'name': 'snu-23-celegans', 'label': 'snu-23', '@id': '/targets/snu-23-celegans/', 'title': 'snu-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecaa3e6b-6996-42d7-9a61-2dda65cbf6ad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF699RXA/ 10007435 Kevin White, UChicago cea0a5d9ed4bd2639e1618e9cdc80c08 https://www.encodeproject.org/files/ENCFF728NBU/@@download/ENCFF728NBU.bigWig released s3://encode-public/2016/02/03/863acbb8-91cf-49f3-b10b-d120665510b8/ENCFF728NBU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF698EJM fastq fastq reads ENCSR142WLZ Control ChIP-seq /fly-donors/ENCDO289GTW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31410/'], '@type': ['Target', 'Item'], 'name': 'Bteb2-dmelanogaster', 'label': 'Bteb2', '@id': '/targets/Bteb2-dmelanogaster/', 'title': 'Bteb2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f511005f-378a-4eaa-b625-0c7112a4c8cf', 'status': 'released'} dm3 X 4653612 4674339 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 398589822 Kevin White, UChicago 25ed15ad6019b3df0206d4a279055f20 https://www.encodeproject.org/files/ENCFF698EJM/@@download/ENCFF698EJM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/470f97f8-f1d7-48e7-9239-1446b25d1c47/ENCFF698EJM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF790LWG bam bam alignments dm3 ENCSR142WLZ Control ChIP-seq /fly-donors/ENCDO289GTW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31410/'], '@type': ['Target', 'Item'], 'name': 'Bteb2-dmelanogaster', 'label': 'Bteb2', '@id': '/targets/Bteb2-dmelanogaster/', 'title': 'Bteb2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f511005f-378a-4eaa-b625-0c7112a4c8cf', 'status': 'released'} dm3 X 4653612 4674339 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF698EJM/ 574012976 Kevin White, UChicago 778802038fdf09f0e7a23679c416872a https://www.encodeproject.org/files/ENCFF790LWG/@@download/ENCFF790LWG.bam released s3://encode-public/2015/08/05/eb041b0a-a339-469a-b030-ca056fd61a91/ENCFF790LWG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF652EPB bigWig bigWig read-depth normalized signal dm3 ENCSR142WLZ Control ChIP-seq /fly-donors/ENCDO289GTW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31410/'], '@type': ['Target', 'Item'], 'name': 'Bteb2-dmelanogaster', 'label': 'Bteb2', '@id': '/targets/Bteb2-dmelanogaster/', 'title': 'Bteb2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f511005f-378a-4eaa-b625-0c7112a4c8cf', 'status': 'released'} dm3 X 4653612 4674339 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF790LWG/ 15256622 Kevin White, UChicago fa6601b0b8b94185117b54947b7cca18 https://www.encodeproject.org/files/ENCFF652EPB/@@download/ENCFF652EPB.bigWig released s3://encode-public/2015/10/07/899b0086-2fa5-4b78-ae6e-70a86f669656/ENCFF652EPB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF087NWF bigWig bigWig signal of unique reads dm3 ENCSR142WLZ Control ChIP-seq /fly-donors/ENCDO289GTW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31410/'], '@type': ['Target', 'Item'], 'name': 'Bteb2-dmelanogaster', 'label': 'Bteb2', '@id': '/targets/Bteb2-dmelanogaster/', 'title': 'Bteb2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f511005f-378a-4eaa-b625-0c7112a4c8cf', 'status': 'released'} dm3 X 4653612 4674339 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF790LWG/ 15342265 Kevin White, UChicago 5728c3144e3b51d45ef2f07c10c26dbd https://www.encodeproject.org/files/ENCFF087NWF/@@download/ENCFF087NWF.bigWig released s3://encode-public/2015/10/07/18c851f4-0eb3-4fc5-a15f-04a211ef2144/ENCFF087NWF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF527PQK bam bam alignments dm6 ENCSR142WLZ Control ChIP-seq /fly-donors/ENCDO289GTW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31410/'], '@type': ['Target', 'Item'], 'name': 'Bteb2-dmelanogaster', 'label': 'Bteb2', '@id': '/targets/Bteb2-dmelanogaster/', 'title': 'Bteb2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f511005f-378a-4eaa-b625-0c7112a4c8cf', 'status': 'released'} dm3 X 4653612 4674339 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF698EJM/ 572711959 Kevin White, UChicago ba7dff253404c2c04d43904eb37834d0 https://www.encodeproject.org/files/ENCFF527PQK/@@download/ENCFF527PQK.bam released s3://encode-public/2016/04/20/245adfb8-d2ca-4c5b-9bf2-008173908e58/ENCFF527PQK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF765AWJ bigWig bigWig signal of unique reads dm6 ENCSR142WLZ Control ChIP-seq /fly-donors/ENCDO289GTW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31410/'], '@type': ['Target', 'Item'], 'name': 'Bteb2-dmelanogaster', 'label': 'Bteb2', '@id': '/targets/Bteb2-dmelanogaster/', 'title': 'Bteb2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f511005f-378a-4eaa-b625-0c7112a4c8cf', 'status': 'released'} dm3 X 4653612 4674339 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF527PQK/ 17472676 Kevin White, UChicago 4f51ecd20d3368c20196521d59dcdc2a https://www.encodeproject.org/files/ENCFF765AWJ/@@download/ENCFF765AWJ.bigWig released s3://encode-public/2016/06/20/56c4dd5e-08c6-4a8f-a8e3-08958bd3c6b9/ENCFF765AWJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF999QQU bigWig bigWig read-depth normalized signal dm6 ENCSR142WLZ Control ChIP-seq /fly-donors/ENCDO289GTW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31410/'], '@type': ['Target', 'Item'], 'name': 'Bteb2-dmelanogaster', 'label': 'Bteb2', '@id': '/targets/Bteb2-dmelanogaster/', 'title': 'Bteb2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f511005f-378a-4eaa-b625-0c7112a4c8cf', 'status': 'released'} dm3 X 4653612 4674339 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF527PQK/ 17351356 Kevin White, UChicago 65b0c4a7083994240ad48c71fed7ad1c https://www.encodeproject.org/files/ENCFF999QQU/@@download/ENCFF999QQU.bigWig released s3://encode-public/2016/06/20/030afb15-9afe-42c7-a751-f0abb7debf94/ENCFF999QQU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001GYG bam bam alignments hg19 ENCSR000DPW Control ChIP-seq /human-donors/ENCDO442SWC/ CLO:0021511 AG10803 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GYO/ 991917233 John Stamatoyannopoulos, UW 17750156661b841bbd474bc308d4c528 https://www.encodeproject.org/files/ENCFF001GYG/@@download/ENCFF001GYG.bam archived s3://encode-public/2011/06/25/76894257-30fe-4252-a705-ae4aa7a270d2/ENCFF001GYG.bam Lab custom hg19 archived low read depth, low read length ENCFF001GYH bigWig bigWig raw signal hg19 ENCSR000DPW Control ChIP-seq /human-donors/ENCDO442SWC/ CLO:0021511 AG10803 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001GYG/ 192745052 John Stamatoyannopoulos, UW e802c8d074eacd55c3cb6b893a5d586d https://www.encodeproject.org/files/ENCFF001GYH/@@download/ENCFF001GYH.bigWig archived s3://encode-public/2011/06/25/281e8a61-72b4-4017-85fc-97d823e00167/ENCFF001GYH.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001GYO fastq fastq reads ENCSR000DPW Control ChIP-seq /human-donors/ENCDO442SWC/ CLO:0021511 AG10803 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1044552240 John Stamatoyannopoulos, UW 5dc68081bfdb17d360ad60099ac04585 https://www.encodeproject.org/files/ENCFF001GYO/@@download/ENCFF001GYO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/56dcc1d2-5dbd-401b-9cd4-d576a80afd08/ENCFF001GYO.fastq.gz low read depth, low read length ENCFF258DWA bam bam unfiltered alignments GRCh38 ENCSR000DPW Control ChIP-seq /human-donors/ENCDO442SWC/ CLO:0021511 AG10803 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GYO/ 1233697920 ENCODE Processing Pipeline 7e3ca70ad964b36c2591bef91708f0d0 https://www.encodeproject.org/files/ENCFF258DWA/@@download/ENCFF258DWA.bam released s3://encode-public/2016/08/09/d08c04d0-339e-4437-9856-22d761bad42a/ENCFF258DWA.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF085CHA bam bam alignments GRCh38 ENCSR000DPW Control ChIP-seq /human-donors/ENCDO442SWC/ CLO:0021511 AG10803 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GYO/ 911829814 ENCODE Processing Pipeline bae83051bf3b9a46f9a0eeee82952693 https://www.encodeproject.org/files/ENCFF085CHA/@@download/ENCFF085CHA.bam released s3://encode-public/2016/08/09/072c6ec7-bb38-486c-84c9-bed0525c980a/ENCFF085CHA.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF323PSG bam bam unfiltered alignments hg19 ENCSR000DPW Control ChIP-seq /human-donors/ENCDO442SWC/ CLO:0021511 AG10803 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GYO/ 1225813672 ENCODE Processing Pipeline 8c84fc95d6bff16e21bd7315c9898708 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single-ended 1024383678 Bing Ren, UCSD 5127fb68983b5a67daab0e6eb0da371a SRA:SRR3651698 https://www.encodeproject.org/files/ENCFF002AQL/@@download/ENCFF002AQL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/3545f05e-fc91-4adb-84cb-bbfcbad55336/ENCFF002AQL.fastq.gz mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF002AQO fastq fastq reads ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1204752585 Bing Ren, UCSD 3da7df56b202a2c4d4584e8db00ffafd SRA:SRR3651699 https://www.encodeproject.org/files/ENCFF002AQO/@@download/ENCFF002AQO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/20036353-0c06-4204-8144-813e491a2313/ENCFF002AQO.fastq.gz mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF497EOC bam bam unfiltered alignments mm10-minimal ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQO/ 1354977025 ENCODE Processing Pipeline 34f02dc4de102deb7cf97dfbf060af00 https://www.encodeproject.org/files/ENCFF497EOC/@@download/ENCFF497EOC.bam archived s3://encode-public/2015/02/09/74e8225e-3d8f-4db2-ab7d-fa4ea196069a/ENCFF497EOC.bam mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF502LKE bam bam unfiltered alignments mm10-minimal ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002AQL/ 1215326619 ENCODE Processing Pipeline 8391a91b439912815c6e842c0d2704f4 https://www.encodeproject.org/files/ENCFF502LKE/@@download/ENCFF502LKE.bam archived s3://encode-public/2015/02/09/fd296129-2c45-4cf4-8422-47aaea66ea20/ENCFF502LKE.bam mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF786XLC bam bam alignments mm10-minimal ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQO/ 950089794 ENCODE Processing Pipeline 69a30feded9e26e06b38560c78960608 https://www.encodeproject.org/files/ENCFF786XLC/@@download/ENCFF786XLC.bam archived s3://encode-public/2015/05/24/6595b857-833c-4642-bbab-e7a746724835/ENCFF786XLC.bam mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF248DBJ bam bam alignments mm10-minimal ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002AQL/ 760944597 ENCODE Processing Pipeline 6db7084cda681f9be1030021ec3e372f https://www.encodeproject.org/files/ENCFF248DBJ/@@download/ENCFF248DBJ.bam archived s3://encode-public/2015/05/24/66ef8294-4cde-4263-b155-2c0dccf20e7e/ENCFF248DBJ.bam mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF138TKK bam bam unfiltered alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQO/ 1109358210 ENCODE Processing Pipeline 992bac3fc73d245662d272bf49cf6f90 https://www.encodeproject.org/files/ENCFF138TKK/@@download/ENCFF138TKK.bam released s3://encode-public/2016/10/03/707cdbbe-3019-4cc4-adf0-414ad4f0e564/ENCFF138TKK.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF424QZD bam bam alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQO/ 724391712 ENCODE Processing Pipeline 73ca661ed4bc988efb6d60e3598e6bd3 https://www.encodeproject.org/files/ENCFF424QZD/@@download/ENCFF424QZD.bam released s3://encode-public/2016/10/03/82df45cf-dab2-48c1-8c1a-ead03ae68b69/ENCFF424QZD.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF613OCU bam bam unfiltered alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQL/ 1216798818 ENCODE Processing Pipeline 8c328a8edeb631e1937caa82dd293018 https://www.encodeproject.org/files/ENCFF613OCU/@@download/ENCFF613OCU.bam released s3://encode-public/2016/10/03/a1a9d98b-a325-464a-8f87-3f6b3b2f19d0/ENCFF613OCU.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF767URV bam bam alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQL/ 760698062 ENCODE Processing Pipeline af908c145b24edded352ebee05e1f0cf https://www.encodeproject.org/files/ENCFF767URV/@@download/ENCFF767URV.bam released s3://encode-public/2016/10/03/a8f5def4-1454-4a6e-ab93-c583755b4ae3/ENCFF767URV.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF696CCQ bam bam unfiltered alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQO/ 1081831097 ENCODE Processing Pipeline fcb97ca8d9d5c3d817cb75eb93efbb68 https://www.encodeproject.org/files/ENCFF696CCQ/@@download/ENCFF696CCQ.bam released s3://encode-public/2020/10/08/844a95e2-bfeb-48b4-87ef-7481648386e0/ENCFF696CCQ.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF208FFJ bam bam unfiltered alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQL/ 1183564518 ENCODE Processing Pipeline 3acd3b61efd717d51a4978e0a9bb09b6 https://www.encodeproject.org/files/ENCFF208FFJ/@@download/ENCFF208FFJ.bam released s3://encode-public/2020/10/08/35cd998d-5395-475b-8cac-86f42327a794/ENCFF208FFJ.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF733YZV bam bam alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQO/ 779898076 ENCODE Processing Pipeline 7745a46a141bb23c2084113b8e876814 https://www.encodeproject.org/files/ENCFF733YZV/@@download/ENCFF733YZV.bam released s3://encode-public/2020/10/08/5b40d963-46c0-4b2e-836c-71f5d53cc512/ENCFF733YZV.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF978SCC bam bam alignments mm10 ENCSR254WNU Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQL/ 816554979 ENCODE Processing Pipeline b95431c97ad3d268b9dc1add1beaf98f https://www.encodeproject.org/files/ENCFF978SCC/@@download/ENCFF978SCC.bam released s3://encode-public/2020/10/08/c722dfee-c301-4118-90b1-6ca3a839ca20/ENCFF978SCC.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length, mixed read lengths ENCFF000RMK bam bam alignments hg19 ENCSR116HGL Control ChIP-seq UBERON:0001155 colon tissue Homo sapiens DNA 2012-08-27 ENCODE see document 35 436617285 Vishwanath Iyer, UTA 15bac287a548d4d166d511db6a82090c https://www.encodeproject.org/files/ENCFF000RMK/@@download/ENCFF000RMK.bam archived s3://encode-public/2012/07/26/b85651bd-1b65-4443-add9-0a2934d28b50/ENCFF000RMK.bam Lab custom hg19 released ENCFF000RML bigWig bigWig signal hg19 ENCSR116HGL Control ChIP-seq UBERON:0001155 colon tissue Homo sapiens DNA 2012-08-27 ENCODE see document 3754005883 Vishwanath Iyer, UTA 3181d55ec6bc75f82de0f65cd4d837b0 https://www.encodeproject.org/files/ENCFF000RML/@@download/ENCFF000RML.bigWig archived s3://encode-public/2012/07/26/3a8030b1-d853-4d5a-9cee-559de89d19b4/ENCFF000RML.bigWig Lab custom hg19 released ENCFF000RNJ fastq fastq reads ENCSR116HGL Control ChIP-seq /human-donors/ENCDO307AAA/ UBERON:0001155 colon tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 576648815 Vishwanath Iyer, UTA 29cd64afd0c7cfc8cdbba25b95aa5270 https://www.encodeproject.org/files/ENCFF000RNJ/@@download/ENCFF000RNJ.fastq.gz Illumina Genome Analyzer archived s3://encode-public/2012/07/26/15c69638-aa8d-4a49-9613-031421a39595/ENCFF000RNJ.fastq.gz ENCFF001HTQ bam bam alignments hg19 ENCSR000DWG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUC/ 971767849 John Stamatoyannopoulos, UW 0b78ee0b19e13e795ef4320063929ca5 https://www.encodeproject.org/files/ENCFF001HTQ/@@download/ENCFF001HTQ.bam archived s3://encode-public/2011/06/25/264904ba-30a4-4de2-88ae-9a658064d43c/ENCFF001HTQ.bam Lab custom hg19 archived low read length ENCFF001HTR bigWig bigWig raw signal hg19 ENCSR000DWG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 /files/ENCFF001HTQ/ 191358046 John Stamatoyannopoulos, UW b9bb5029d295151a3a237e0a1dc086b2 https://www.encodeproject.org/files/ENCFF001HTR/@@download/ENCFF001HTR.bigWig archived s3://encode-public/2011/06/25/98c1e144-4553-4db7-87f5-b6a22506299b/ENCFF001HTR.bigWig Lab custom hg19 archived low read length ENCFF001HUC fastq fastq reads ENCSR000DWG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 single-ended 1038316163 John Stamatoyannopoulos, UW 75be4da77036b272d22ef286d7303164 https://www.encodeproject.org/files/ENCFF001HUC/@@download/ENCFF001HUC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/426df371-c2fe-4ed5-a2f4-e6d1ff4f94ef/ENCFF001HUC.fastq.gz low read length ENCFF234IPE bam bam unfiltered alignments GRCh38 ENCSR000DWG Control 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hg19 ENCSR000DWG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUC/, /files/ENCFF807MUK/ 1245040620 ENCODE Processing Pipeline 0c18bb0385bf5050d903595a7b93268b https://www.encodeproject.org/files/ENCFF727JXX/@@download/ENCFF727JXX.bam released s3://encode-public/2016/11/13/c90ab26e-dc6e-465e-aa58-42c3827ed4a1/ENCFF727JXX.bam ENCODE3 hg19 archived low read length ENCFF183VCQ bam bam alignments hg19 ENCSR000DWG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUC/, /files/ENCFF807MUK/ 899919465 ENCODE Processing Pipeline 937df9dbc192af8d481fc8c1b65f902a https://www.encodeproject.org/files/ENCFF183VCQ/@@download/ENCFF183VCQ.bam released s3://encode-public/2016/11/13/f0c66afd-6893-4c72-b35d-250f6ef97e9a/ENCFF183VCQ.bam ENCODE3 hg19 archived low read length ENCFF625QMU bam bam unfiltered alignments GRCh38 ENCSR000DWG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUC/, /files/ENCFF110MCL/ 1220725637 ENCODE Processing Pipeline dcdd93a4060e85567e0bded33a0584a3 https://www.encodeproject.org/files/ENCFF625QMU/@@download/ENCFF625QMU.bam released s3://encode-public/2020/09/03/0edb37d2-eac3-4cba-8751-4fb33a5f4058/ENCFF625QMU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF029RUY bam bam alignments GRCh38 ENCSR000DWG Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0005726 LNCaP clone FGC cell line Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUC/, /files/ENCFF110MCL/ 980238692 ENCODE Processing Pipeline f0b1bbbe894323a40769198ffc3e507d https://www.encodeproject.org/files/ENCFF029RUY/@@download/ENCFF029RUY.bam released s3://encode-public/2020/09/03/8498fce9-f859-4919-95d8-6e1a67a70dc7/ENCFF029RUY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF002AQI fastq fastq reads ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 951216218 Bing Ren, UCSD fcd6ce2a5fd16ec0b82315fca2b6e654 SRA:SRR3651761 https://www.encodeproject.org/files/ENCFF002AQI/@@download/ENCFF002AQI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/aa18e3c9-3060-4405-8585-0335775fb66f/ENCFF002AQI.fastq.gz low read depth, low read length ENCFF002AQJ fastq fastq reads ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 1175162435 Bing Ren, UCSD 111aaa9b136ffd019ef4abcd26ee7acb SRA:SRR3651760 https://www.encodeproject.org/files/ENCFF002AQJ/@@download/ENCFF002AQJ.fastq.gz Illumina HiSeq 2000 released 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https://www.encodeproject.org/files/ENCFF124CMK/@@download/ENCFF124CMK.bam archived s3://encode-public/2015/02/09/1172a5b0-ac6c-47d4-9657-5f00c965f2b6/ENCFF124CMK.bam low read depth, low read length ENCFF991ANF bam bam alignments mm10-minimal ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQJ/, /files/ENCFF806TVZ/ 944320670 ENCODE Processing Pipeline 3bc193c0690aa0bd4b007caff624f65f https://www.encodeproject.org/files/ENCFF991ANF/@@download/ENCFF991ANF.bam archived s3://encode-public/2015/05/24/abb61f91-0af9-407c-8d86-71b502da9de3/ENCFF991ANF.bam low read depth, low read length ENCFF271DZZ bam bam alignments mm10-minimal ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002AQI/ 733147913 ENCODE Processing Pipeline 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/files/ENCFF002AQJ/ 1414435622 ENCODE Processing Pipeline 00418996e3c80894646df94dd1ea8c47 https://www.encodeproject.org/files/ENCFF936JYR/@@download/ENCFF936JYR.bam released s3://encode-public/2016/10/03/a0a4b4de-55d0-438f-a41d-f54cb0db3883/ENCFF936JYR.bam ENCODE3 mm10 archived low read depth, low read length ENCFF945UFA bam bam alignments mm10 ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQI/ 732900934 ENCODE Processing Pipeline 650ca02412e3134906536a3bdf37bae1 https://www.encodeproject.org/files/ENCFF945UFA/@@download/ENCFF945UFA.bam released s3://encode-public/2016/10/03/6d1285f3-d5f7-4585-abe9-5878b6f03a82/ENCFF945UFA.bam ENCODE3 mm10 archived low read depth, low read length ENCFF688CVA bam bam alignments mm10 ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQJ/ 944005568 ENCODE Processing Pipeline 9ab75020e3540350afd2287e4fe02b84 https://www.encodeproject.org/files/ENCFF688CVA/@@download/ENCFF688CVA.bam released s3://encode-public/2016/10/03/a742523f-4676-4e2a-920e-b0da7081f147/ENCFF688CVA.bam ENCODE3 mm10 archived low read depth, low read length ENCFF139HGP bam bam unfiltered alignments mm10 ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQI/, /files/ENCFF309GLL/ 1109367931 ENCODE Processing Pipeline 7f2514725c60868e6e56ae10df2bc1e8 https://www.encodeproject.org/files/ENCFF139HGP/@@download/ENCFF139HGP.bam released s3://encode-public/2020/10/08/296fdef0-5b34-483a-b8d8-4a3f052d390c/ENCFF139HGP.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF099CEI bam bam alignments mm10 ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQJ/ 1014574435 ENCODE Processing Pipeline e5a52490e17abb42263c8ee4a1ce3c14 https://www.encodeproject.org/files/ENCFF099CEI/@@download/ENCFF099CEI.bam released s3://encode-public/2020/10/08/7cf17baa-64c1-4d83-9f6a-69b9ebe79a4d/ENCFF099CEI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF058YEL bam bam unfiltered alignments mm10 ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQJ/ 1375416227 ENCODE Processing Pipeline 85c7a9f1f1f0741bead574e6256928a1 https://www.encodeproject.org/files/ENCFF058YEL/@@download/ENCFF058YEL.bam released s3://encode-public/2020/10/08/ff8c1504-42c3-4a8c-aa18-134d4103c0b8/ENCFF058YEL.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF258TGY bam bam alignments mm10 ENCSR280SYC Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQI/, /files/ENCFF309GLL/ 788406453 ENCODE Processing Pipeline 7d731c9d6269671f6653c3ef1b03fe0c https://www.encodeproject.org/files/ENCFF258TGY/@@download/ENCFF258TGY.bam released s3://encode-public/2020/10/08/a81df767-0c7c-4fb1-ad82-c65823a0231d/ENCFF258TGY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF424ISK fastq fastq reads ENCSR515JDZ Control ChIP-seq /worm-donors/ENCDO642SDR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184562/'], '@type': ['Target', 'Item'], 'name': 'nhr-179-celegans', 'label': 'nhr-179', '@id': '/targets/nhr-179-celegans/', 'title': 'nhr-179 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecedba16-36ff-403b-a9b6-7ecd95955b20', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 861759682 Kevin White, UChicago c1923c9a182a88d46ea59e30cf6dc397 https://www.encodeproject.org/files/ENCFF424ISK/@@download/ENCFF424ISK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/9c8ca541-1915-47a4-bc85-714290c1d336/ENCFF424ISK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF768VNZ bam bam alignments ce10 ENCSR515JDZ Control ChIP-seq /worm-donors/ENCDO642SDR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184562/'], '@type': ['Target', 'Item'], 'name': 'nhr-179-celegans', 'label': 'nhr-179', '@id': '/targets/nhr-179-celegans/', 'title': 'nhr-179 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecedba16-36ff-403b-a9b6-7ecd95955b20', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF424ISK/ 1019900396 Kevin White, UChicago fb6e31808d3fa2e943c532054a6f5faa https://www.encodeproject.org/files/ENCFF768VNZ/@@download/ENCFF768VNZ.bam released s3://encode-public/2015/08/19/f0454018-90a0-4f6f-8dda-e15dee2196a2/ENCFF768VNZ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF223TXT bigWig bigWig signal of unique reads ce10 ENCSR515JDZ Control ChIP-seq /worm-donors/ENCDO642SDR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184562/'], '@type': ['Target', 'Item'], 'name': 'nhr-179-celegans', 'label': 'nhr-179', '@id': '/targets/nhr-179-celegans/', 'title': 'nhr-179 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecedba16-36ff-403b-a9b6-7ecd95955b20', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF768VNZ/ 9969168 Kevin White, UChicago 0681be31eb7976cad4dabb5adad17a1c https://www.encodeproject.org/files/ENCFF223TXT/@@download/ENCFF223TXT.bigWig released s3://encode-public/2015/10/02/f6a32592-1b3a-4e8a-8b9a-4c4d83b55d9d/ENCFF223TXT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF704KPS bigWig bigWig read-depth normalized signal ce10 ENCSR515JDZ Control ChIP-seq /worm-donors/ENCDO642SDR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184562/'], '@type': ['Target', 'Item'], 'name': 'nhr-179-celegans', 'label': 'nhr-179', '@id': '/targets/nhr-179-celegans/', 'title': 'nhr-179 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecedba16-36ff-403b-a9b6-7ecd95955b20', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF768VNZ/ 9978024 Kevin White, UChicago 96ce3378cef9f91f772d2f50ec4645c9 https://www.encodeproject.org/files/ENCFF704KPS/@@download/ENCFF704KPS.bigWig released s3://encode-public/2015/10/02/3bf9e0be-0ad0-4b12-888d-bcd625847437/ENCFF704KPS.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF610OET bam bam alignments ce11 ENCSR515JDZ Control ChIP-seq /worm-donors/ENCDO642SDR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184562/'], '@type': ['Target', 'Item'], 'name': 'nhr-179-celegans', 'label': 'nhr-179', '@id': '/targets/nhr-179-celegans/', 'title': 'nhr-179 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecedba16-36ff-403b-a9b6-7ecd95955b20', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF424ISK/ 1020766400 Kevin White, UChicago cabc3e424f3346bb3ada56a1c9b3e9d7 https://www.encodeproject.org/files/ENCFF610OET/@@download/ENCFF610OET.bam released s3://encode-public/2016/01/20/30448f13-be95-4f19-ad12-470683700383/ENCFF610OET.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF659GPA bigWig bigWig signal of unique reads ce11 ENCSR515JDZ Control ChIP-seq /worm-donors/ENCDO642SDR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184562/'], '@type': ['Target', 'Item'], 'name': 'nhr-179-celegans', 'label': 'nhr-179', '@id': '/targets/nhr-179-celegans/', 'title': 'nhr-179 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecedba16-36ff-403b-a9b6-7ecd95955b20', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF610OET/ 9964571 Kevin White, UChicago 4c0ff827ef9611cc0e36a26fe4a63e0a https://www.encodeproject.org/files/ENCFF659GPA/@@download/ENCFF659GPA.bigWig released s3://encode-public/2016/02/03/3df9d71b-8288-4e9f-92f2-ff6c01d12188/ENCFF659GPA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF561PYL bigWig bigWig read-depth normalized signal ce11 ENCSR515JDZ Control ChIP-seq /worm-donors/ENCDO642SDR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184562/'], '@type': ['Target', 'Item'], 'name': 'nhr-179-celegans', 'label': 'nhr-179', '@id': '/targets/nhr-179-celegans/', 'title': 'nhr-179 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ecedba16-36ff-403b-a9b6-7ecd95955b20', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF610OET/ 9970095 Kevin White, UChicago 15b4b06cc9c8c6f658e6c0e71f15996a https://www.encodeproject.org/files/ENCFF561PYL/@@download/ENCFF561PYL.bigWig released s3://encode-public/2016/02/03/c796e5d4-80e3-442a-8c4e-e2464d4bedf8/ENCFF561PYL.bigWig Lab custom 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/files/ENCFF031FIV/, /files/ENCFF004TTN/, /files/ENCFF872VVX/, /files/ENCFF110MCL/, /files/ENCFF901MKY/, /files/ENCFF481YDV/, /files/ENCFF072ADM/ 2390298533 ENCODE Processing Pipeline 8423aef3513e826abaea9468f6ee1027 https://www.encodeproject.org/files/ENCFF974LYI/@@download/ENCFF974LYI.bam released s3://encode-public/2021/04/09/9c226c37-7c54-4d40-9573-766e7d826864/ENCFF974LYI.bam ENCODE4 v1.8.0 GRCh38 released ENCFF724SGJ fastq fastq reads ENCSR626XZR Control ChIP-seq /worm-donors/ENCDO278GQP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179824/'], '@type': ['Target', 'Item'], 'name': 'mes-4-celegans', 'label': 'mes-4', '@id': 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read-depth normalized signal ce10 ENCSR626XZR Control ChIP-seq /worm-donors/ENCDO278GQP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179824/'], '@type': ['Target', 'Item'], 'name': 'mes-4-celegans', 'label': 'mes-4', '@id': '/targets/mes-4-celegans/', 'title': 'mes-4 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '714c9ca5-63a1-48e3-9603-5b867dbc0c7f', 'status': 'released'} ce11 V 13410774 13446605 DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF179GUD/ 9953057 Kevin White, UChicago 99ca7a75883a4605741aba046f2c31b8 https://www.encodeproject.org/files/ENCFF420URN/@@download/ENCFF420URN.bigWig released s3://encode-public/2015/10/02/477488b3-965e-4a8f-932c-d9480127bf2f/ENCFF420URN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF555NWX bigWig bigWig signal of unique reads ce10 ENCSR626XZR Control ChIP-seq /worm-donors/ENCDO278GQP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179824/'], '@type': ['Target', 'Item'], 'name': 'mes-4-celegans', 'label': 'mes-4', '@id': '/targets/mes-4-celegans/', 'title': 'mes-4 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 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UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179824/'], '@type': ['Target', 'Item'], 'name': 'mes-4-celegans', 'label': 'mes-4', '@id': '/targets/mes-4-celegans/', 'title': 'mes-4 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': '714c9ca5-63a1-48e3-9603-5b867dbc0c7f', 'status': 'released'} ce11 V 13410774 13446605 DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF865ERM/ 9956191 Kevin White, UChicago 6591ad8f158a26c4bfc7d444bd5a35d9 https://www.encodeproject.org/files/ENCFF599ZFV/@@download/ENCFF599ZFV.bigWig released s3://encode-public/2016/02/03/bdefae36-18fd-4bb8-afce-221326c19572/ENCFF599ZFV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF491XMZ bigWig bigWig read-depth normalized signal ce11 ENCSR626XZR Control ChIP-seq /worm-donors/ENCDO278GQP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179824/'], '@type': ['Target', 'Item'], 'name': 'mes-4-celegans', 'label': 'mes-4', '@id': '/targets/mes-4-celegans/', 'title': 'mes-4 (Caenorhabditis elegans)', 'investigated_as': ['chromatin remodeler'], 'uuid': 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https://www.encodeproject.org/files/ENCFF490MFW/@@download/ENCFF490MFW.bam released s3://encode-public/2016/08/09/300fa7f8-0e80-4cf3-8900-3e4f11d430f2/ENCFF490MFW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF684GUW bam bam unfiltered alignments hg19 ENCSR000DRT Control ChIP-seq /human-donors/ENCDO000ABZ/ EFO:0001162 GM12875 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HHU/, /files/ENCFF807MUK/ 840429502 ENCODE Processing Pipeline ce427dedcb09ed6fff1d5d0b7c20dd3d https://www.encodeproject.org/files/ENCFF684GUW/@@download/ENCFF684GUW.bam released s3://encode-public/2016/08/23/6de819c3-851f-466e-a6bb-a896d1096381/ENCFF684GUW.bam ENCODE3 hg19 archived low read depth, low read length ENCFF182XEA bam bam alignments hg19 ENCSR000DRT Control ChIP-seq /human-donors/ENCDO000ABZ/ EFO:0001162 GM12875 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HHU/, /files/ENCFF807MUK/ 594260239 ENCODE Processing Pipeline 24b3675997ed2ea985c0e98508760973 https://www.encodeproject.org/files/ENCFF182XEA/@@download/ENCFF182XEA.bam released s3://encode-public/2016/08/23/ed8ff08f-a60a-46a6-aa3f-c95cbde7fbbc/ENCFF182XEA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF287SNN bam bam unfiltered alignments GRCh38 ENCSR000DRT Control ChIP-seq /human-donors/ENCDO000ABZ/ EFO:0001162 GM12875 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HHU/ 826042950 ENCODE Processing Pipeline 5124fa155348ae1c572a91f17f1346e9 https://www.encodeproject.org/files/ENCFF287SNN/@@download/ENCFF287SNN.bam released s3://encode-public/2020/09/03/899f7b93-0f5f-410c-948d-ef88d00d425b/ENCFF287SNN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF090CTW bam bam alignments GRCh38 ENCSR000DRT Control ChIP-seq /human-donors/ENCDO000ABZ/ EFO:0001162 GM12875 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HHU/ 651442325 ENCODE Processing Pipeline 29fedf5102c344bb40f49b21b36fd300 https://www.encodeproject.org/files/ENCFF090CTW/@@download/ENCFF090CTW.bam released s3://encode-public/2020/09/03/fddc893d-70d0-4247-a767-0f72797f5a88/ENCFF090CTW.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF589PMA fastq fastq reads ENCSR282QFI Control ChIP-seq /worm-donors/ENCDO017HLJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174505/'], '@type': ['Target', 'Item'], 'name': 'zfp-2-celegans', 'label': 'zfp-2', '@id': '/targets/zfp-2-celegans/', 'title': 'zfp-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a8d97fea-1c11-419d-a6f5-740e2bfbb241', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 421941554 Kevin White, UChicago f4d6641a9ccfafcdbc25101a503bcc21 https://www.encodeproject.org/files/ENCFF589PMA/@@download/ENCFF589PMA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/2c2b6359-3e18-4845-a4be-78d2526a6d55/ENCFF589PMA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF339MQR bam bam alignments ce10 ENCSR282QFI Control ChIP-seq /worm-donors/ENCDO017HLJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174505/'], '@type': ['Target', 'Item'], 'name': 'zfp-2-celegans', 'label': 'zfp-2', '@id': '/targets/zfp-2-celegans/', 'title': 'zfp-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a8d97fea-1c11-419d-a6f5-740e2bfbb241', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF589PMA/ 612562731 Kevin White, UChicago dbae1a8c3230b9fa528a3e02964ed472 https://www.encodeproject.org/files/ENCFF339MQR/@@download/ENCFF339MQR.bam released s3://encode-public/2015/08/07/28c30ab5-0bb2-4b96-89a1-fcd46148832a/ENCFF339MQR.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF432ZYK bigWig bigWig read-depth normalized signal ce10 ENCSR282QFI Control ChIP-seq /worm-donors/ENCDO017HLJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174505/'], '@type': ['Target', 'Item'], 'name': 'zfp-2-celegans', 'label': 'zfp-2', '@id': '/targets/zfp-2-celegans/', 'title': 'zfp-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a8d97fea-1c11-419d-a6f5-740e2bfbb241', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF339MQR/ 10013478 Kevin White, UChicago 32cd1274046f19d93359b770ed0faeb7 https://www.encodeproject.org/files/ENCFF432ZYK/@@download/ENCFF432ZYK.bigWig released s3://encode-public/2015/10/02/1b8c1a52-5ceb-4b8f-a907-b41f112a918e/ENCFF432ZYK.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF936NQZ bigWig bigWig signal of unique reads ce10 ENCSR282QFI Control ChIP-seq /worm-donors/ENCDO017HLJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174505/'], '@type': ['Target', 'Item'], 'name': 'zfp-2-celegans', 'label': 'zfp-2', '@id': '/targets/zfp-2-celegans/', 'title': 'zfp-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a8d97fea-1c11-419d-a6f5-740e2bfbb241', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF339MQR/ 9962509 Kevin White, UChicago 428cfec8cb315964045aae7366769142 https://www.encodeproject.org/files/ENCFF936NQZ/@@download/ENCFF936NQZ.bigWig released s3://encode-public/2015/10/02/fff41fd7-d89d-4c7d-9597-be36341b66be/ENCFF936NQZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF026LCK bam bam alignments ce11 ENCSR282QFI Control ChIP-seq /worm-donors/ENCDO017HLJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174505/'], '@type': ['Target', 'Item'], 'name': 'zfp-2-celegans', 'label': 'zfp-2', '@id': '/targets/zfp-2-celegans/', 'title': 'zfp-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a8d97fea-1c11-419d-a6f5-740e2bfbb241', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF589PMA/ 613074017 Kevin White, UChicago b726c6daa11396d2f2def83b93c4d5ad https://www.encodeproject.org/files/ENCFF026LCK/@@download/ENCFF026LCK.bam released s3://encode-public/2016/01/20/34a7de6e-63cd-43fd-b4e6-ee2038a872e3/ENCFF026LCK.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF646MGO bigWig bigWig signal of unique reads ce11 ENCSR282QFI Control ChIP-seq /worm-donors/ENCDO017HLJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174505/'], '@type': ['Target', 'Item'], 'name': 'zfp-2-celegans', 'label': 'zfp-2', '@id': '/targets/zfp-2-celegans/', 'title': 'zfp-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a8d97fea-1c11-419d-a6f5-740e2bfbb241', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF026LCK/ 9955246 Kevin White, UChicago eb0564cedc3e07de9c963ee8f867d593 https://www.encodeproject.org/files/ENCFF646MGO/@@download/ENCFF646MGO.bigWig released s3://encode-public/2016/02/03/63105a1f-4a2f-4621-b295-a19e64151946/ENCFF646MGO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF462UQN bigWig bigWig read-depth normalized signal ce11 ENCSR282QFI Control ChIP-seq /worm-donors/ENCDO017HLJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174505/'], '@type': ['Target', 'Item'], 'name': 'zfp-2-celegans', 'label': 'zfp-2', '@id': '/targets/zfp-2-celegans/', 'title': 'zfp-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a8d97fea-1c11-419d-a6f5-740e2bfbb241', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF026LCK/ 10012146 Kevin White, UChicago d2e81e4bf62e5b45a637445ff26acc3c https://www.encodeproject.org/files/ENCFF462UQN/@@download/ENCFF462UQN.bigWig released s3://encode-public/2016/02/03/b605de8f-df5b-49b0-8792-70f7f306dfca/ENCFF462UQN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF001HBH bam bam alignments hg19 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBT/ 631634448 John Stamatoyannopoulos, UW 5b8d487a6633dc308361d2581ac679c0 https://www.encodeproject.org/files/ENCFF001HBH/@@download/ENCFF001HBH.bam archived s3://encode-public/2011/06/25/e979fe4a-d8d6-4525-a8ed-5aa39e09c718/ENCFF001HBH.bam Lab custom hg19 archived low read depth, low read length ENCFF001HBI bigWig bigWig raw signal hg19 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HBH/ 150122148 John Stamatoyannopoulos, UW 61f0f50442012677fa42a5e5d5f7a472 https://www.encodeproject.org/files/ENCFF001HBI/@@download/ENCFF001HBI.bigWig archived s3://encode-public/2011/06/25/7419a699-c482-4892-a1a7-c17dee2553e7/ENCFF001HBI.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HBT fastq fastq reads ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 691178666 John Stamatoyannopoulos, UW e62e6dfe2518c546cd9b56e5d6437c15 https://www.encodeproject.org/files/ENCFF001HBT/@@download/ENCFF001HBT.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/06/25/abcf7172-70e5-43e6-9b3e-8da0fed4ee06/ENCFF001HBT.fastq.gz low read depth, low read length ENCFF499TUS bam bam alignments GRCh38 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 28 /files/ENCFF001HBT/, /files/ENCFF110MCL/ 495033992 ENCODE Processing Pipeline 963b8fcd8f3f8cef874841d1e67a0168 https://www.encodeproject.org/files/ENCFF499TUS/@@download/ENCFF499TUS.bam released s3://encode-public/2020/10/01/66262fac-489f-481e-90ec-2c72162ebcf3/ENCFF499TUS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF439ZLD bam bam unfiltered alignments GRCh38 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBT/, /files/ENCFF643CGH/ 846592506 ENCODE Processing Pipeline 7b7d580bf921e664720576b073ec25b2 https://www.encodeproject.org/files/ENCFF439ZLD/@@download/ENCFF439ZLD.bam released s3://encode-public/2016/10/26/786ce153-ed5d-4eca-b55d-e8fe2738cc27/ENCFF439ZLD.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF572DEU bam bam alignments GRCh38 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBT/, /files/ENCFF643CGH/ 578346951 ENCODE Processing Pipeline 53d8bbf715b2cad9ebd3ca3974ed753c https://www.encodeproject.org/files/ENCFF572DEU/@@download/ENCFF572DEU.bam released s3://encode-public/2016/10/26/d97059ff-520b-4258-a516-19ef1bf62791/ENCFF572DEU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF483SMB bam bam unfiltered alignments hg19 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBT/, /files/ENCFF807MUK/ 842681059 ENCODE Processing Pipeline 01ce053bf0889977bed29397ef420f8b https://www.encodeproject.org/files/ENCFF483SMB/@@download/ENCFF483SMB.bam released s3://encode-public/2016/11/13/079c4b6a-1e4e-4b26-af55-f53a99e07986/ENCFF483SMB.bam ENCODE3 hg19 archived low read depth, low read length ENCFF719YWQ bam bam alignments hg19 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBT/, /files/ENCFF807MUK/ 575613862 ENCODE Processing Pipeline 422b68b6dce6b5e031ea4356106662ae https://www.encodeproject.org/files/ENCFF719YWQ/@@download/ENCFF719YWQ.bam released s3://encode-public/2016/11/13/067e1377-678d-4e7d-b3b1-8bdc9a5421f4/ENCFF719YWQ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF507KCQ bam bam alignments GRCh38 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBT/, /files/ENCFF110MCL/ 635509068 ENCODE Processing Pipeline 5145a48f9326f0900307fa9f8cf3f46c https://www.encodeproject.org/files/ENCFF507KCQ/@@download/ENCFF507KCQ.bam released s3://encode-public/2020/09/03/7049abb0-1489-4530-ba37-74989136e67d/ENCFF507KCQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF221XRS bam bam unfiltered alignments GRCh38 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HBT/, /files/ENCFF110MCL/ 828752442 ENCODE Processing Pipeline 290888dbd113cbdbc36527144db47548 https://www.encodeproject.org/files/ENCFF221XRS/@@download/ENCFF221XRS.bam released s3://encode-public/2020/09/03/df37b14d-1914-417a-a812-c85eb31436b7/ENCFF221XRS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF807ECT bam bam unfiltered alignments GRCh38 ENCSR000DQX Control ChIP-seq /human-donors/ENCDO000ABL/ EFO:0005353 GM12801 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 28 /files/ENCFF001HBT/, /files/ENCFF110MCL/ 703981242 ENCODE Processing Pipeline e690b7794f8946580bcbf6a63f3fdd75 https://www.encodeproject.org/files/ENCFF807ECT/@@download/ENCFF807ECT.bam released s3://encode-public/2020/10/01/b5e31d8d-b894-4b06-a0e2-a07626742937/ENCFF807ECT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF189QLB bam bam unfiltered alignments hg19 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF807MUK/, /files/ENCFF002EJB/, /files/ENCFF002EJI/ 6405242254 ENCODE Processing Pipeline 99fad01a1352f4e715fca3d21cc4a2c2 https://www.encodeproject.org/files/ENCFF189QLB/@@download/ENCFF189QLB.bam released s3://encode-public/2018/02/21/bd4271e8-4662-4a0e-b874-0301a78215a7/ENCFF189QLB.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF517EOH bam bam unfiltered alignments hg19 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EJF/, /files/ENCFF002EJD/, /files/ENCFF807MUK/ 6749075111 ENCODE Processing Pipeline 59fc1b599120d6b462675d93de2769d6 https://www.encodeproject.org/files/ENCFF517EOH/@@download/ENCFF517EOH.bam released s3://encode-public/2018/02/21/9ae6ac0e-59c2-4005-816b-45b3966b35b6/ENCFF517EOH.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF002EJB fastq fastq reads ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 paired-ended 2 /files/ENCFF002EJI/ 2986958350 Michael Snyder, Stanford f2a602cf68fdd37badb7c363c188ba63 SRA:SRR5112197 https://www.encodeproject.org/files/ENCFF002EJB/@@download/ENCFF002EJB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/a6cb9f9c-5784-43b7-b119-3fa47f0cca6f/ENCFF002EJB.fastq.gz mild to moderate bottlenecking ENCFF002EJD fastq fastq reads ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EJF/ 3134545783 Michael Snyder, Stanford dd1375787c020ef7117c3683c7e5f1f8 SRA:SRR5112198 https://www.encodeproject.org/files/ENCFF002EJD/@@download/ENCFF002EJD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/b8920759-673c-4b3a-a254-fd2985d4984a/ENCFF002EJD.fastq.gz mild to moderate bottlenecking ENCFF002EJF fastq fastq reads ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EJD/ 3134559325 Michael Snyder, Stanford af203147d07e8d32abc4c1ad7f3adb69 SRA:SRR5112198 https://www.encodeproject.org/files/ENCFF002EJF/@@download/ENCFF002EJF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/5d75dfc5-cce0-49cd-8eb0-7e01e4e7d085/ENCFF002EJF.fastq.gz mild to moderate bottlenecking ENCFF002EJI fastq fastq reads ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 paired-ended 1 /files/ENCFF002EJB/ 2990712654 Michael Snyder, Stanford 8e4b8210dc86b8b00ea66a2f03eacb69 SRA:SRR5112197 https://www.encodeproject.org/files/ENCFF002EJI/@@download/ENCFF002EJI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/17e9412a-889c-480b-bc6c-1618462eda70/ENCFF002EJI.fastq.gz mild to moderate bottlenecking ENCFF529AAN bam bam alignments hg19 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF807MUK/, /files/ENCFF002EJB/, /files/ENCFF002EJI/ 5305946499 ENCODE Processing Pipeline e72f712ef70986c935387ecb34650878 https://www.encodeproject.org/files/ENCFF529AAN/@@download/ENCFF529AAN.bam released s3://encode-public/2015/10/29/a239cc83-41b4-44c2-9f01-19ac29d168e0/ENCFF529AAN.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF821IRG bam bam alignments hg19 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EJF/, /files/ENCFF002EJD/, /files/ENCFF807MUK/ 5747922277 ENCODE Processing Pipeline 34670328a0f568ae7c7753b58e58c959 https://www.encodeproject.org/files/ENCFF821IRG/@@download/ENCFF821IRG.bam released s3://encode-public/2015/10/29/240e1174-d251-4c86-8bda-91fdf193f049/ENCFF821IRG.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF638XTT bam bam unfiltered alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF643CGH/, /files/ENCFF002EJB/, /files/ENCFF002EJI/ 6415954847 ENCODE Processing Pipeline 75a87821e11553a68d68acec22a57f32 https://www.encodeproject.org/files/ENCFF638XTT/@@download/ENCFF638XTT.bam released s3://encode-public/2016/05/06/67d88dfc-2526-4e95-bf54-2c9d897f9431/ENCFF638XTT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF097AAA bam bam unfiltered alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EJF/, /files/ENCFF002EJD/, /files/ENCFF643CGH/ 6761417960 ENCODE Processing Pipeline c4ac39d166e858f92ab1d3b5eecdee96 https://www.encodeproject.org/files/ENCFF097AAA/@@download/ENCFF097AAA.bam released s3://encode-public/2016/05/06/7b4089e5-6a57-4862-b53e-218b4729416f/ENCFF097AAA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF625HWV bam bam alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF643CGH/, /files/ENCFF002EJB/, /files/ENCFF002EJI/ 5313191677 ENCODE Processing Pipeline d5ff26b66dba6893fe274a006df73f3a https://www.encodeproject.org/files/ENCFF625HWV/@@download/ENCFF625HWV.bam released s3://encode-public/2016/05/06/969d8b11-712a-4f3e-9c7a-3f1d67bd4f62/ENCFF625HWV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF593HFQ bam bam alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EJF/, /files/ENCFF002EJD/, /files/ENCFF643CGH/ 5756289271 ENCODE Processing Pipeline bee7387c9426ae69b22f115377ef7251 https://www.encodeproject.org/files/ENCFF593HFQ/@@download/ENCFF593HFQ.bam released s3://encode-public/2016/05/06/6fb41104-b8a6-4bc9-ae1a-1fc4dc9c4619/ENCFF593HFQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF250KGL bam bam unfiltered alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EJF/, /files/ENCFF002EJD/ 6683241522 ENCODE Processing Pipeline d22e29191073b8db4a55570de07c5535 https://www.encodeproject.org/files/ENCFF250KGL/@@download/ENCFF250KGL.bam released s3://encode-public/2020/10/28/e61ba323-4617-43b7-86ae-fb1df5f6646d/ENCFF250KGL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF164HJP bam bam unfiltered alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 /files/ENCFF002EJB/, /files/ENCFF110MCL/, /files/ENCFF002EJI/ 6343959529 ENCODE Processing Pipeline 8cde7859b71032c41cf1061104c05d49 https://www.encodeproject.org/files/ENCFF164HJP/@@download/ENCFF164HJP.bam released s3://encode-public/2020/10/28/2a95cc6b-ed13-48ef-ab2d-5c300806e5b8/ENCFF164HJP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF489JCA bam bam alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EJF/, /files/ENCFF002EJD/ 5453387726 ENCODE Processing Pipeline 6ceeffdbf8fa43210af478c4563b8089 https://www.encodeproject.org/files/ENCFF489JCA/@@download/ENCFF489JCA.bam released s3://encode-public/2020/10/28/3d451089-d36e-4a91-8d96-450f5ad55ffa/ENCFF489JCA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF646ZPF bam bam alignments GRCh38 ENCSR871XML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 /files/ENCFF002EJB/, /files/ENCFF110MCL/, /files/ENCFF002EJI/ 5034125752 ENCODE Processing Pipeline 3951ed9621b5a069bb9147918ce78ae1 https://www.encodeproject.org/files/ENCFF646ZPF/@@download/ENCFF646ZPF.bam released s3://encode-public/2020/10/28/c1ccbd5e-0964-46d9-b92e-a33dd364ea09/ENCFF646ZPF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF001HIB bam bam alignments hg19 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF001HII/ 884664956 John Stamatoyannopoulos, UW 47afc956562362b214a71b372bd1f5cb https://www.encodeproject.org/files/ENCFF001HIB/@@download/ENCFF001HIB.bam archived s3://encode-public/2011/06/25/68da9154-0d5a-4fd1-8d3f-f95c21c009cd/ENCFF001HIB.bam Lab custom hg19 archived low read length ENCFF001HIC bigWig bigWig raw signal hg19 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 /files/ENCFF001HIB/ 184578179 John Stamatoyannopoulos, UW 5abeed2d93aa8258306a3fd20250e1c3 https://www.encodeproject.org/files/ENCFF001HIC/@@download/ENCFF001HIC.bigWig archived s3://encode-public/2011/06/25/e199bad8-9229-4301-a4da-4b0de96ea6c9/ENCFF001HIC.bigWig Lab custom hg19 archived low read length ENCFF001HII fastq fastq reads ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 single-ended 952535232 John Stamatoyannopoulos, UW 98a9df0797b233a5bef81cef08a1aaba https://www.encodeproject.org/files/ENCFF001HII/@@download/ENCFF001HII.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/cac10912-d014-4d16-82be-fdb27fa60224/ENCFF001HII.fastq.gz low read length ENCFF663QPN bam bam unfiltered alignments GRCh38 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HII/ 1178771724 ENCODE Processing Pipeline 6d2dcac028e3907070c6a49f8efad899 https://www.encodeproject.org/files/ENCFF663QPN/@@download/ENCFF663QPN.bam released s3://encode-public/2016/08/09/6ec8963f-de3e-4fee-8b0c-a67fbf8a7a22/ENCFF663QPN.bam ENCODE3 GRCh38 archived low read length ENCFF136OPR bam bam alignments GRCh38 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HII/ 806617891 ENCODE Processing Pipeline 7ec2762d8391b953fb17a09cb5f5dcfd https://www.encodeproject.org/files/ENCFF136OPR/@@download/ENCFF136OPR.bam released s3://encode-public/2016/08/09/129655e7-73b5-438f-901a-5a44007905f8/ENCFF136OPR.bam ENCODE3 GRCh38 archived low read length ENCFF763THW bam bam unfiltered alignments hg19 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HII/ 1174782349 ENCODE Processing Pipeline 6ba96be14c8cd34965e6f0c581b2f387 https://www.encodeproject.org/files/ENCFF763THW/@@download/ENCFF763THW.bam released s3://encode-public/2016/11/13/a93a920f-b4ce-4b63-8ac5-409dfe2a5f26/ENCFF763THW.bam ENCODE3 hg19 archived low read length ENCFF807CDF bam bam alignments hg19 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HII/ 806951665 ENCODE Processing Pipeline f8920012da616e5f052945f662fb1425 https://www.encodeproject.org/files/ENCFF807CDF/@@download/ENCFF807CDF.bam released s3://encode-public/2016/11/13/50be1ceb-f3a6-438b-8f0b-b7e99b23c50f/ENCFF807CDF.bam ENCODE3 hg19 archived low read length ENCFF826IUN bam bam unfiltered alignments GRCh38 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HII/ 1148316438 ENCODE Processing Pipeline 4eb779abbab78001745c8868253174ae https://www.encodeproject.org/files/ENCFF826IUN/@@download/ENCFF826IUN.bam released s3://encode-public/2020/09/03/de0c558b-0c24-42d6-86cd-05e843023830/ENCFF826IUN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF999NUK bam bam alignments GRCh38 ENCSR000DSC Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 2 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HII/ 894323008 ENCODE Processing Pipeline 79602a4df1e6e43b791a2ecf18bcfad6 https://www.encodeproject.org/files/ENCFF999NUK/@@download/ENCFF999NUK.bam released s3://encode-public/2020/09/03/c2dfe4ce-1fdf-4066-8f97-0d2955098d65/ENCFF999NUK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF689ONE fastq fastq reads ENCSR994QGM Control ChIP-seq /fly-donors/ENCDO180UMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43795/'], '@type': ['Target', 'Item'], 'name': 'zfh2-dmelanogaster', 'label': 'zfh2', '@id': '/targets/zfh2-dmelanogaster/', 'title': 'zfh2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f83ca430-db59-4574-945b-1a31960c89b4', 'status': 'released'} dm3 4 484637 572390 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 399961845 Kevin White, UChicago cd87e5752cbea053cdf37b4da4e110c8 https://www.encodeproject.org/files/ENCFF689ONE/@@download/ENCFF689ONE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/434dd6d0-16cc-4aab-b556-dac9d94034b8/ENCFF689ONE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF490AYC bam bam alignments dm3 ENCSR994QGM Control ChIP-seq /fly-donors/ENCDO180UMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43795/'], '@type': ['Target', 'Item'], 'name': 'zfh2-dmelanogaster', 'label': 'zfh2', '@id': '/targets/zfh2-dmelanogaster/', 'title': 'zfh2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f83ca430-db59-4574-945b-1a31960c89b4', 'status': 'released'} dm3 4 484637 572390 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF689ONE/ 599386423 Kevin White, UChicago fcd3519fcff621e77ef55662920b54cd https://www.encodeproject.org/files/ENCFF490AYC/@@download/ENCFF490AYC.bam released s3://encode-public/2015/08/05/40326828-0b0d-483c-a7aa-c2381f12c047/ENCFF490AYC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF659HFS bigWig bigWig read-depth normalized signal dm3 ENCSR994QGM Control ChIP-seq /fly-donors/ENCDO180UMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43795/'], '@type': ['Target', 'Item'], 'name': 'zfh2-dmelanogaster', 'label': 'zfh2', '@id': '/targets/zfh2-dmelanogaster/', 'title': 'zfh2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f83ca430-db59-4574-945b-1a31960c89b4', 'status': 'released'} dm3 4 484637 572390 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF490AYC/ 15277606 Kevin White, UChicago d858528bf38eff71b28e861f84452046 https://www.encodeproject.org/files/ENCFF659HFS/@@download/ENCFF659HFS.bigWig released s3://encode-public/2015/10/05/c1e38670-ba26-47c6-a7c3-8b3dc5aeb8b6/ENCFF659HFS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF306NEJ bigWig bigWig signal of unique reads dm3 ENCSR994QGM Control ChIP-seq /fly-donors/ENCDO180UMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43795/'], '@type': ['Target', 'Item'], 'name': 'zfh2-dmelanogaster', 'label': 'zfh2', '@id': '/targets/zfh2-dmelanogaster/', 'title': 'zfh2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f83ca430-db59-4574-945b-1a31960c89b4', 'status': 'released'} dm3 4 484637 572390 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF490AYC/ 15320857 Kevin White, UChicago 55c3122c6a92aa4a204f355fc3d36a60 https://www.encodeproject.org/files/ENCFF306NEJ/@@download/ENCFF306NEJ.bigWig released s3://encode-public/2015/10/05/578c9b08-1fed-4092-9eac-4e08e7b5ed7e/ENCFF306NEJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF197TEF bam bam alignments dm6 ENCSR994QGM Control ChIP-seq /fly-donors/ENCDO180UMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43795/'], '@type': ['Target', 'Item'], 'name': 'zfh2-dmelanogaster', 'label': 'zfh2', '@id': '/targets/zfh2-dmelanogaster/', 'title': 'zfh2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f83ca430-db59-4574-945b-1a31960c89b4', 'status': 'released'} dm3 4 484637 572390 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF689ONE/ 597337793 Kevin White, UChicago 200cc5fecf4852d5b364e068bc77155b https://www.encodeproject.org/files/ENCFF197TEF/@@download/ENCFF197TEF.bam released s3://encode-public/2016/04/22/ff42df3e-b81c-44c6-8895-f621a5d6ce96/ENCFF197TEF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF585SXB bigWig bigWig signal of unique reads dm6 ENCSR994QGM Control ChIP-seq /fly-donors/ENCDO180UMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43795/'], '@type': ['Target', 'Item'], 'name': 'zfh2-dmelanogaster', 'label': 'zfh2', '@id': '/targets/zfh2-dmelanogaster/', 'title': 'zfh2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f83ca430-db59-4574-945b-1a31960c89b4', 'status': 'released'} dm3 4 484637 572390 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF197TEF/ 17439566 Kevin White, UChicago 518dce1f43700cb24ac750fc9c4fc765 https://www.encodeproject.org/files/ENCFF585SXB/@@download/ENCFF585SXB.bigWig released s3://encode-public/2016/06/21/1368bec9-a174-408d-b879-466a8b7e1ba7/ENCFF585SXB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF614XSP bigWig bigWig read-depth normalized signal dm6 ENCSR994QGM Control ChIP-seq /fly-donors/ENCDO180UMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43795/'], '@type': ['Target', 'Item'], 'name': 'zfh2-dmelanogaster', 'label': 'zfh2', '@id': '/targets/zfh2-dmelanogaster/', 'title': 'zfh2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f83ca430-db59-4574-945b-1a31960c89b4', 'status': 'released'} dm3 4 484637 572390 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF197TEF/ 17372669 Kevin White, UChicago b3247bef844d75ac6fe5a414b5cb5cab https://www.encodeproject.org/files/ENCFF614XSP/@@download/ENCFF614XSP.bigWig released s3://encode-public/2016/06/21/224f6f46-ca99-449d-bca5-38e97c7da038/ENCFF614XSP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001MQS bigWig bigWig signal mm9 ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 2999778436 Ross Hardison, PennState 5e9d0500e6bf937cb055c0b0d596b41d https://www.encodeproject.org/files/ENCFF001MQS/@@download/ENCFF001MQS.bigWig archived s3://encode-public/2011/11/05/c5437914-0817-44c0-9373-ad279d6f1504/ENCFF001MQS.bigWig Lab custom mm9 archived low read length ENCFF001MQT bam bam alignments mm9 ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MQZ/ 1889071744 Ross Hardison, PennState 23cfacd1c4fd96eeca426a5620ab0e18 https://www.encodeproject.org/files/ENCFF001MQT/@@download/ENCFF001MQT.bam archived s3://encode-public/2011/11/05/a61340da-0ec2-438b-af29-2cea0a4b675c/ENCFF001MQT.bam Lab custom mm9 archived low read length ENCFF001MQZ fastq fastq reads ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 single-ended 1546653507 Ross Hardison, PennState f224a6154f66084f43871d99c45f3d79 https://www.encodeproject.org/files/ENCFF001MQZ/@@download/ENCFF001MQZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/be4d7b2c-852a-44bc-8b66-fda099214c1e/ENCFF001MQZ.fastq.gz low read length ENCFF779JLR bam bam unfiltered alignments mm10-minimal ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MQZ/ 1990431978 J. Michael Cherry, Stanford 6a177ac7a49da9c090b08283284d2483 https://www.encodeproject.org/files/ENCFF779JLR/@@download/ENCFF779JLR.bam archived s3://encode-public/2015/02/04/b6836934-e275-4f35-99f2-6b987252926c/ENCFF779JLR.bam ENCODE3 mm10-minimal archived low read length ENCFF166WMB bam bam alignments mm10-minimal ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MQZ/ 1479278136 J. Michael Cherry, Stanford dba590b159ae34760e79696ba0debf66 https://www.encodeproject.org/files/ENCFF166WMB/@@download/ENCFF166WMB.bam archived s3://encode-public/2015/05/23/ba3c2de8-ce0b-471e-af80-5d954c6d2a48/ENCFF166WMB.bam ENCODE3 mm10-minimal archived low read length ENCFF350XLQ bam bam unfiltered alignments mm10 ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MQZ/ 1826546862 ENCODE Processing Pipeline cde8c417c2dc50c374acce36ba944522 https://www.encodeproject.org/files/ENCFF350XLQ/@@download/ENCFF350XLQ.bam released s3://encode-public/2016/11/28/c3dd022d-5da6-4cef-8ab6-2d7d373bfc19/ENCFF350XLQ.bam ENCODE3 mm10 archived low read length ENCFF441NWZ bam bam alignments mm10 ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MQZ/ 1343494896 ENCODE Processing Pipeline 5a9f3a3a1b250b664cd6e244d5aa43d6 https://www.encodeproject.org/files/ENCFF441NWZ/@@download/ENCFF441NWZ.bam released s3://encode-public/2016/11/28/549d7a65-f3d9-475c-b3c5-dd3deb15f656/ENCFF441NWZ.bam ENCODE3 mm10 archived low read length ENCFF297TAE bam bam unfiltered alignments mm10 ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MQZ/, /files/ENCFF309GLL/ 1983233539 ENCODE Processing Pipeline fbf7203781e625c772fec5ea8187faf6 https://www.encodeproject.org/files/ENCFF297TAE/@@download/ENCFF297TAE.bam released s3://encode-public/2020/11/06/423a232c-74a3-4085-b7ef-7452ac5e0672/ENCFF297TAE.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF611UGW bam bam alignments mm10 ENCSR000DGU Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line 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ENCSR404IRS Control ChIP-seq /human-donors/ENCDO952UGS/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE see document 300-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF407DUW/ 727122825 ENCODE Processing Pipeline 8fe9f000905e42c2edb7c735a0201d36 https://www.encodeproject.org/files/ENCFF803KJN/@@download/ENCFF803KJN.bam released s3://encode-public/2017/11/17/9578cac6-5d82-436a-a0a8-4ae6302bedcf/ENCFF803KJN.bam ENCODE3 hg19 archived low read length ENCFF242IEI bam bam redacted alignments GRCh38 ENCSR404IRS Control ChIP-seq /human-donors/ENCDO952UGS/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE see document 300-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF407DUW/ 528775391 ENCODE Processing Pipeline 878d604d8e8c0315c38b6160ca557059 https://www.encodeproject.org/files/ENCFF242IEI/@@download/ENCFF242IEI.bam released s3://encode-public/2017/11/17/2be79213-5846-433a-8fee-bc2aa300b424/ENCFF242IEI.bam ENCODE3 GRCh38 archived low read length ENCFF349CTQ bam bam redacted alignments hg19 ENCSR404IRS Control ChIP-seq /human-donors/ENCDO952UGS/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE see document 300-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF407DUW/ 528885870 ENCODE Processing Pipeline cd311daaa49785d40214ded408dcd5a9 https://www.encodeproject.org/files/ENCFF349CTQ/@@download/ENCFF349CTQ.bam released s3://encode-public/2017/11/17/9502bcbe-65cd-419f-82d4-0d558928cd03/ENCFF349CTQ.bam ENCODE3 hg19 archived low read length ENCFF276TPS bam bam redacted alignments GRCh38 ENCSR404IRS Control ChIP-seq /human-donors/ENCDO952UGS/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE see document 300-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF407DUW/ 1716878594 ENCODE Processing Pipeline 320c684bf189900a40d634c51117e2ed https://www.encodeproject.org/files/ENCFF276TPS/@@download/ENCFF276TPS.bam released s3://encode-public/2021/01/27/66ed9827-8c1a-4522-99cb-417269ab5b41/ENCFF276TPS.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF140HNP fastq fastq reads ENCSR049JKQ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_3 76 single-ended 590879267 Bradley Bernstein, Broad e6f9ca4fbd1445a6a1e25d9509f3d2a5 SRA:SRR16808720 https://www.encodeproject.org/files/ENCFF140HNP/@@download/ENCFF140HNP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/446bd776-5c60-4359-a6d1-0c82b2da845d/ENCFF140HNP.fastq.gz ENCFF182CTB fastq fastq reads ENCSR049JKQ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_3 76 single-ended 574948223 Bradley Bernstein, Broad 0137ce0af397dd5be73dcc996ce7553e SRA:SRR16808721 https://www.encodeproject.org/files/ENCFF182CTB/@@download/ENCFF182CTB.fastq.gz Illumina NextSeq 500 released 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moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000RUH bigWig bigWig signal hg19 ENCSR000DLT Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 3801013373 Vishwanath Iyer, UTA fdbceaaf29af05ddf745da26e4cc2f36 https://www.encodeproject.org/files/ENCFF000RUH/@@download/ENCFF000RUH.bigWig archived s3://encode-public/2012/07/26/f45e3091-7c99-40d5-9b42-5b6c7f738d95/ENCFF000RUH.bigWig Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000RUP fastq fastq reads ENCSR000DLT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 single-ended 487209034 Vishwanath Iyer, UTA 4c7956a71015a34d68ab5f9930f0be94 https://www.encodeproject.org/files/ENCFF000RUP/@@download/ENCFF000RUP.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/b6129411-d060-42cf-b5d9-48a46b9aeb3d/ENCFF000RUP.fastq.gz mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF700WEC bam bam unfiltered alignments GRCh38 ENCSR000DLT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF643CGH/, /files/ENCFF000RUP/ 614418714 ENCODE Processing Pipeline 8bce15d7b2c11ab2c2601305357d227c https://www.encodeproject.org/files/ENCFF700WEC/@@download/ENCFF700WEC.bam released s3://encode-public/2016/10/26/40d59151-5f23-4c84-bf3b-ed156bbd1499/ENCFF700WEC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF138JNO bam bam alignments GRCh38 ENCSR000DLT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF643CGH/, /files/ENCFF000RUP/ 312434026 ENCODE Processing Pipeline e3476758d59769f46949f9fec609ce1f https://www.encodeproject.org/files/ENCFF138JNO/@@download/ENCFF138JNO.bam released s3://encode-public/2016/10/26/b69d3762-75e7-48d0-9b99-363d85c3dade/ENCFF138JNO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF062SCH bam bam alignments GRCh38 ENCSR000DLT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF110MCL/, /files/ENCFF000RUP/ 342108957 ENCODE Processing Pipeline f6d9af3aaeeecffd3e5b8858dce2ec46 https://www.encodeproject.org/files/ENCFF062SCH/@@download/ENCFF062SCH.bam released s3://encode-public/2020/09/03/6dbe6d6b-37e4-416a-a138-e1a971343da2/ENCFF062SCH.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF644PRS bam bam unfiltered alignments GRCh38 ENCSR000DLT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 35 /files/ENCFF110MCL/, /files/ENCFF000RUP/ 602661008 ENCODE Processing Pipeline dcd6c8116327b84fad3edbe40a5a9988 https://www.encodeproject.org/files/ENCFF644PRS/@@download/ENCFF644PRS.bam released s3://encode-public/2020/09/03/73f012c3-fead-490c-bd74-3ca0ea08fb06/ENCFF644PRS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF001ZUM fastq fastq reads ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 493604507 Bing Ren, UCSD 73d3d4ad0432d951a910cda3afdec7f2 SRA:SRR3651205 https://www.encodeproject.org/files/ENCFF001ZUM/@@download/ENCFF001ZUM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/487255e6-28d1-4b7c-b68b-fe6b86934969/ENCFF001ZUM.fastq.gz low read depth, low read length, mixed read lengths ENCFF001ZUS fastq fastq reads ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 754337289 Bing Ren, UCSD 3c3f26197d45de02cc02b9b7a69f531f SRA:SRR3651207 https://www.encodeproject.org/files/ENCFF001ZUS/@@download/ENCFF001ZUS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/7b77dbe4-42ba-47fb-85b9-c81740397cbd/ENCFF001ZUS.fastq.gz low read depth, low read length, mixed read lengths ENCFF204GFG bam bam alignments mm10-minimal ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUS/ 643722325 ENCODE Processing Pipeline 555c10194a809dc0fb2a2478f7753d4c https://www.encodeproject.org/files/ENCFF204GFG/@@download/ENCFF204GFG.bam archived s3://encode-public/2015/03/11/8c39c523-7e69-461f-80fe-b68855a2b805/ENCFF204GFG.bam low read depth, low read length, mixed read lengths ENCFF825VCS fastq fastq reads ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 119673445 Bing Ren, UCSD 63853fe7aec1624936ce58b470dded1b SRA:SRR3651206 https://www.encodeproject.org/files/ENCFF825VCS/@@download/ENCFF825VCS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/04/17/86f55818-6302-4203-b633-e30ce5a7c661/ENCFF825VCS.fastq.gz low read depth, low read length, mixed read lengths ENCFF695ODM bam bam alignments mm10-minimal ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 36 /files/ENCFF001ZUM/, /files/ENCFF806TVZ/, /files/ENCFF825VCS/ 500391340 ENCODE Processing Pipeline 67b159ebe450f1aa6e05048336f4eb65 https://www.encodeproject.org/files/ENCFF695ODM/@@download/ENCFF695ODM.bam archived s3://encode-public/2015/05/12/5fe29250-4ff9-42b1-8ebe-ef844d36d798/ENCFF695ODM.bam low read depth, low read length, mixed read lengths ENCFF541LVF bam bam unfiltered alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUS/ 1000510545 ENCODE Processing Pipeline a9488b8b00cd666c08bccbf5ecb64270 https://www.encodeproject.org/files/ENCFF541LVF/@@download/ENCFF541LVF.bam released s3://encode-public/2016/10/02/d6112956-a697-4bd6-92e5-8eb62226db50/ENCFF541LVF.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF631YQS bam bam alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 36 /files/ENCFF001ZUM/, /files/ENCFF018NEO/, /files/ENCFF825VCS/ 472209617 ENCODE Processing Pipeline 15af31be16b5b71e508ff5e8f6bd6499 https://www.encodeproject.org/files/ENCFF631YQS/@@download/ENCFF631YQS.bam released s3://encode-public/2016/10/02/cc415465-8cd1-4236-9617-07647a736e29/ENCFF631YQS.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF549NGM bam bam unfiltered alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 36 /files/ENCFF001ZUM/, /files/ENCFF018NEO/, /files/ENCFF825VCS/ 769279316 ENCODE Processing Pipeline 47503839c74dce4049398b037b5347ff https://www.encodeproject.org/files/ENCFF549NGM/@@download/ENCFF549NGM.bam released s3://encode-public/2016/10/02/96c663a2-0b9f-4469-9bd5-4b7a0625de0a/ENCFF549NGM.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF658BBR bam bam alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUS/ 643497800 ENCODE Processing Pipeline 4f7b29cfb5286acfd9c59f504bff925d https://www.encodeproject.org/files/ENCFF658BBR/@@download/ENCFF658BBR.bam released s3://encode-public/2016/10/02/cf8311b6-375f-4012-ba0e-da5fa6151d38/ENCFF658BBR.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF948REO bam bam alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 36 /files/ENCFF001ZUM/, /files/ENCFF825VCS/, /files/ENCFF309GLL/ 507433654 ENCODE Processing Pipeline 2740138326ca7d36f21f117bdaaee256 https://www.encodeproject.org/files/ENCFF948REO/@@download/ENCFF948REO.bam released s3://encode-public/2020/10/08/56cdd760-3613-4a3c-8960-b6d4596d8540/ENCFF948REO.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF791PTR bam bam unfiltered alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 36 /files/ENCFF001ZUM/, /files/ENCFF825VCS/, /files/ENCFF309GLL/ 749099018 ENCODE Processing Pipeline 0e18b4b61a422a9c2f7ff972f03f6d52 https://www.encodeproject.org/files/ENCFF791PTR/@@download/ENCFF791PTR.bam released s3://encode-public/2020/10/08/ed2f06c2-d6bc-44c6-98a8-a5d1fcb1dd97/ENCFF791PTR.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF831QBA bam bam unfiltered alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZUS/, /files/ENCFF309GLL/ 973375183 ENCODE Processing Pipeline 7b9aff9dd316685a325a065105278792 https://www.encodeproject.org/files/ENCFF831QBA/@@download/ENCFF831QBA.bam released s3://encode-public/2020/10/08/8bb487db-9a40-4440-877a-4d48317aef90/ENCFF831QBA.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF119WNW bam bam alignments mm10 ENCSR024JAN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZUS/, /files/ENCFF309GLL/ 691060034 ENCODE Processing Pipeline 8ccfbd30178c1cac4ae8c126087f670a https://www.encodeproject.org/files/ENCFF119WNW/@@download/ENCFF119WNW.bam released s3://encode-public/2020/10/08/e2ca79d3-212b-4e0f-8bb3-f8683de5d3ab/ENCFF119WNW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF001KPD bam bam alignments mm9 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF001KPR/ 820159431 Bing Ren, UCSD 42b09efdf9c196fa88aabbc0a194e839 https://www.encodeproject.org/files/ENCFF001KPD/@@download/ENCFF001KPD.bam archived s3://encode-public/2011/12/23/75c5c03a-6f69-4e01-886b-ad0056d6d766/ENCFF001KPD.bam Lab custom mm9 archived low read depth, low read length ENCFF001KPF bam bam alignments mm9 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KPS/ 829225192 Bing Ren, UCSD 0307d21dcc9214cd355e3a3230c71b91 https://www.encodeproject.org/files/ENCFF001KPF/@@download/ENCFF001KPF.bam archived s3://encode-public/2011/12/23/80fd1921-4b6e-445f-b11a-65225eef79db/ENCFF001KPF.bam Lab custom mm9 archived low read depth, low read length ENCFF001KPI bigWig bigWig signal mm9 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1, 2 1_1, 2_1 /files/ENCFF001KPD/, /files/ENCFF001KPF/ 81238587 Bing Ren, UCSD 190cf540fef841e10e8206d90cbd01e1 https://www.encodeproject.org/files/ENCFF001KPI/@@download/ENCFF001KPI.bigWig archived s3://encode-public/2011/12/23/fccb0c77-7233-4140-aeac-1859ac265af1/ENCFF001KPI.bigWig Lab custom mm9 archived low read depth, low read length ENCFF001KPR fastq fastq reads ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 single-ended 877794843 Bing Ren, UCSD 0efb30e0740e12cbe44c180dd5f27800 https://www.encodeproject.org/files/ENCFF001KPR/@@download/ENCFF001KPR.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/666face9-f645-454e-a0a2-b23aabe9490f/ENCFF001KPR.fastq.gz low read depth, low read length ENCFF001KPS fastq fastq reads ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 single-ended 912121354 Bing Ren, UCSD 542911abfc6951dfaa9d7cdbf15ba0af https://www.encodeproject.org/files/ENCFF001KPS/@@download/ENCFF001KPS.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/082d4ec9-5fb2-4e1b-8fa9-02fe082e91e2/ENCFF001KPS.fastq.gz low read depth, low read length ENCFF396NOQ bam bam unfiltered alignments mm10-minimal ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KPS/, /files/ENCFF806TVZ/ 1074811895 J. Michael Cherry, Stanford 88c644e29063aff51068c835de28eeb7 https://www.encodeproject.org/files/ENCFF396NOQ/@@download/ENCFF396NOQ.bam archived s3://encode-public/2015/02/04/ec1a6669-6f88-4872-a806-ed2760cac6d2/ENCFF396NOQ.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF482HSX bam bam unfiltered alignments mm10-minimal ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF001KPR/, /files/ENCFF806TVZ/ 1040646511 J. Michael Cherry, Stanford 59702f8e4695817b76fcc6eb45299c62 https://www.encodeproject.org/files/ENCFF482HSX/@@download/ENCFF482HSX.bam archived s3://encode-public/2015/02/04/277becf8-5bf2-4476-8cf1-d2a3c90e81f5/ENCFF482HSX.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF545AEW bam bam alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KPS/ 697336880 ENCODE Processing Pipeline bc85991ca16af327728e78c180fe077c https://www.encodeproject.org/files/ENCFF545AEW/@@download/ENCFF545AEW.bam released s3://encode-public/2016/04/28/2bbf4cf3-cb1d-48ff-a007-2f8a4402bd75/ENCFF545AEW.bam ENCODE3 mm10 archived low read depth, low read length ENCFF161DPJ bam bam alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KPR/ 681864507 ENCODE Processing Pipeline 0ef7014ad5d6075bfed1b6656f7f5d8b https://www.encodeproject.org/files/ENCFF161DPJ/@@download/ENCFF161DPJ.bam released s3://encode-public/2016/04/28/727aabe9-4598-48e9-b5b6-e6f94b8b29fc/ENCFF161DPJ.bam ENCODE3 mm10 archived low read depth, low read length ENCFF042RPX bam bam unfiltered alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KPR/ 1041926354 ENCODE Processing Pipeline 87b3b940a43e082a4734feab87ec9bac https://www.encodeproject.org/files/ENCFF042RPX/@@download/ENCFF042RPX.bam released s3://encode-public/2016/07/06/f5b5cf96-dafe-4ad4-80ae-4bb3a9e3b1e7/ENCFF042RPX.bam ENCODE3 mm10 archived low read depth, low read length ENCFF196HKI bam bam unfiltered alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KPS/ 1075937130 ENCODE Processing Pipeline 67183d76dd23f30b4a91578d73c07af2 https://www.encodeproject.org/files/ENCFF196HKI/@@download/ENCFF196HKI.bam released s3://encode-public/2016/07/06/2102108c-dc4e-4be1-9965-183932d43f8e/ENCFF196HKI.bam ENCODE3 mm10 archived low read depth, low read length ENCFF468MFJ bam bam alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KPS/ 744677732 ENCODE Processing Pipeline 5aa7ae60510fca6de4dd3fdd56f8f6cf https://www.encodeproject.org/files/ENCFF468MFJ/@@download/ENCFF468MFJ.bam released s3://encode-public/2020/10/12/7e19efdd-9594-4603-ae09-f5bbe32f30d5/ENCFF468MFJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF996SAH bam bam alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF001KPR/, /files/ENCFF309GLL/ 727567745 ENCODE Processing Pipeline 9418a455c2e736a4bedf46a3ce66a232 https://www.encodeproject.org/files/ENCFF996SAH/@@download/ENCFF996SAH.bam released s3://encode-public/2020/10/12/a6f1f855-63b9-4289-b29f-cbe3d917bc6c/ENCFF996SAH.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF672JKI bam bam unfiltered alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF001KPR/, /files/ENCFF309GLL/ 1026676852 ENCODE Processing Pipeline 5733898c0c4ae1651f86dfa716c8115b https://www.encodeproject.org/files/ENCFF672JKI/@@download/ENCFF672JKI.bam released s3://encode-public/2020/10/12/9f30db8f-9f1f-451f-a3f6-420219100d3f/ENCFF672JKI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF378QXW bam bam unfiltered alignments mm10 ENCSR000CBB Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:2000042 embryonic fibroblast primary cell Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KPS/ 1059957429 ENCODE Processing Pipeline 59e1b5330a975447b2b8ad51053a8e2f https://www.encodeproject.org/files/ENCFF378QXW/@@download/ENCFF378QXW.bam released s3://encode-public/2020/10/12/0f19c68f-8d39-4683-afae-ea468bcad2b5/ENCFF378QXW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF001HIE bam bam alignments hg19 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF001HIK/ 863949659 John Stamatoyannopoulos, UW e5786cf71baa6fc8dacfc02d2c4816c7 https://www.encodeproject.org/files/ENCFF001HIE/@@download/ENCFF001HIE.bam archived s3://encode-public/2011/06/25/82312e85-92ea-41fd-b385-39b8a8ba2b4b/ENCFF001HIE.bam Lab custom hg19 archived low read depth, low read length ENCFF001HIF bigWig bigWig raw signal hg19 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 /files/ENCFF001HIE/ 166013431 John Stamatoyannopoulos, UW d096b44fc7213b943b2b6c2676fc91d4 https://www.encodeproject.org/files/ENCFF001HIF/@@download/ENCFF001HIF.bigWig archived s3://encode-public/2011/06/25/452d5ec0-6729-4521-9f30-34bef6c69bd4/ENCFF001HIF.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HIK fastq fastq reads ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 single-ended 939318877 John Stamatoyannopoulos, UW 9baa6088334b71230cee62e1584c30d1 https://www.encodeproject.org/files/ENCFF001HIK/@@download/ENCFF001HIK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/6f3bb324-255c-4a2c-b1cf-d1bd7cdab59d/ENCFF001HIK.fastq.gz low read depth, low read length ENCFF722WMU bam bam unfiltered alignments GRCh38 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HIK/ 1139931123 ENCODE Processing Pipeline e6ccb62584f21781e0ac452533d9445d https://www.encodeproject.org/files/ENCFF722WMU/@@download/ENCFF722WMU.bam released s3://encode-public/2016/08/09/ef2872c2-bb42-4951-9af8-b386c2e959b3/ENCFF722WMU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF198VJS bam bam alignments GRCh38 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HIK/ 781209139 ENCODE Processing Pipeline 959a032e67780cf90192ac45eff834aa https://www.encodeproject.org/files/ENCFF198VJS/@@download/ENCFF198VJS.bam released s3://encode-public/2016/08/09/6bb0a76e-f886-403a-af3d-1009ae76fc9e/ENCFF198VJS.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF866UAN bam bam unfiltered alignments hg19 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HIK/ 1135061196 ENCODE Processing Pipeline 40c0e3c1a6e905dacbdb790ab416cb68 https://www.encodeproject.org/files/ENCFF866UAN/@@download/ENCFF866UAN.bam released s3://encode-public/2016/11/13/896bdc3a-c2f5-4e62-9e98-65013f5e8717/ENCFF866UAN.bam ENCODE3 hg19 archived low read depth, low read length ENCFF018SKU bam bam alignments hg19 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HIK/ 781442668 ENCODE Processing Pipeline a1095b430d7239d1f71cbaa2e6122225 https://www.encodeproject.org/files/ENCFF018SKU/@@download/ENCFF018SKU.bam released s3://encode-public/2016/11/13/78612163-38dc-4bbb-b142-8251c8166c2a/ENCFF018SKU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF224KJU bam bam unfiltered alignments GRCh38 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF001HIK/, /files/ENCFF110MCL/ 1117262495 ENCODE Processing Pipeline b508d27633006ec6a891c4b3f1c0d56c https://www.encodeproject.org/files/ENCFF224KJU/@@download/ENCFF224KJU.bam released s3://encode-public/2020/09/03/72f5b862-1c44-4693-a4a0-08fc88427d41/ENCFF224KJU.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF563XGX bam bam alignments GRCh38 ENCSR000DSB Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0002664 cardiovascular progenitor cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 5 day DNA 2012-02-16 ENCODE see document 1 1_1 36 /files/ENCFF001HIK/, /files/ENCFF110MCL/ 851894440 ENCODE Processing Pipeline 504e4aa4c00d9428a6b511c93f062808 https://www.encodeproject.org/files/ENCFF563XGX/@@download/ENCFF563XGX.bam released s3://encode-public/2020/09/03/bf5b4a92-be46-40fe-b912-e8f562508b10/ENCFF563XGX.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF016MGA fastq fastq reads ENCSR698GIN Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 1 1_1 50 single-ended 2825576637 Alexander Hoffmann, UCLA f19404f769b6ce8a4cf8fe670f1639c6 SRA:SRR16812803 https://www.encodeproject.org/files/ENCFF016MGA/@@download/ENCFF016MGA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2021/05/26/514e6044-9f7d-4e29-b140-767dd2ab0f58/ENCFF016MGA.fastq.gz ENCFF972NOO fastq fastq reads ENCSR698GIN Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 single-ended 1133807028 Alexander Hoffmann, UCLA 24e063107247d09c2b9dc1e241647bb8 SRA:SRR16812804 https://www.encodeproject.org/files/ENCFF972NOO/@@download/ENCFF972NOO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2021/05/26/19f57a65-9f57-4cc9-aaf5-b760bea9a70f/ENCFF972NOO.fastq.gz ENCFF503OGW fastq fastq reads ENCSR698GIN Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 single-ended 1230838869 Alexander Hoffmann, UCLA 4f231a7cea2dcec616ae44348c5f8b6a SRA:SRR16812805 https://www.encodeproject.org/files/ENCFF503OGW/@@download/ENCFF503OGW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2021/05/26/79cd7446-4ec1-4aa5-a44e-713d111ab1c5/ENCFF503OGW.fastq.gz ENCFF524MUG bam bam unfiltered alignments mm10 ENCSR698GIN Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF016MGA/ 3398678843 ENCODE Processing Pipeline a185d83598aeebc300a2bb8177c46421 https://www.encodeproject.org/files/ENCFF524MUG/@@download/ENCFF524MUG.bam released s3://encode-public/2021/07/13/cc7dd140-76f9-45c0-a2e1-55e753cb9cbb/ENCFF524MUG.bam ENCODE4 v1.9.0 mm10 released ENCFF733JFC bam bam alignments mm10 ENCSR698GIN Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF016MGA/ 2591945324 ENCODE Processing Pipeline 6d7e72718f7356eba2e49ead51a94cd1 https://www.encodeproject.org/files/ENCFF733JFC/@@download/ENCFF733JFC.bam released s3://encode-public/2021/07/13/db29a662-69e9-4cfd-8b69-04f947d16d61/ENCFF733JFC.bam ENCODE4 v1.9.0 mm10 released ENCFF282YOC bam bam alignments mm10 ENCSR698GIN Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 /files/ENCFF972NOO/, /files/ENCFF309GLL/, /files/ENCFF503OGW/ 2216144028 ENCODE Processing Pipeline 1a98118a7659e7687f928da64314854d https://www.encodeproject.org/files/ENCFF282YOC/@@download/ENCFF282YOC.bam released s3://encode-public/2021/07/13/fc1b3582-d817-4db2-a621-db057444ad38/ENCFF282YOC.bam ENCODE4 v1.9.0 mm10 released ENCFF141AAM bam bam unfiltered alignments mm10 ENCSR698GIN Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 /files/ENCFF972NOO/, /files/ENCFF309GLL/, /files/ENCFF503OGW/ 2900365164 ENCODE Processing Pipeline dda5ad9ada1d86efd60ede282873ff76 https://www.encodeproject.org/files/ENCFF141AAM/@@download/ENCFF141AAM.bam released s3://encode-public/2021/07/13/1f6d5574-4af9-4745-b35e-330ba73e343b/ENCFF141AAM.bam ENCODE4 v1.9.0 mm10 released ENCFF880HAU fastq fastq reads ENCSR758JMV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 single-ended 1997319047 Richard Myers, HAIB 3e5f0df6488c7f4e11409711de410236 SRA:SRR16813528 https://www.encodeproject.org/files/ENCFF880HAU/@@download/ENCFF880HAU.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/06/02/8ba99304-8d17-41a0-a380-07cf010eb171/ENCFF880HAU.fastq.gz mild to moderate bottlenecking, low read depth ENCFF643IPX bam bam unfiltered alignments GRCh38 ENCSR758JMV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF880HAU/, /files/ENCFF110MCL/ 1998729879 ENCODE Processing Pipeline 2a79cde5db6ab3f719c070c28f080f70 https://www.encodeproject.org/files/ENCFF643IPX/@@download/ENCFF643IPX.bam released s3://encode-public/2021/07/21/fb6eb349-280b-427a-9ade-ddf7136f8a3a/ENCFF643IPX.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF342RGX bam bam alignments GRCh38 ENCSR758JMV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF880HAU/, /files/ENCFF110MCL/ 1021697208 ENCODE Processing Pipeline 06d2aadcff784ece49afc6285a4d467c https://www.encodeproject.org/files/ENCFF342RGX/@@download/ENCFF342RGX.bam released s3://encode-public/2021/07/21/514d6cf0-7867-43a5-abe5-5fb2f688255e/ENCFF342RGX.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF001HVW bam bam alignments hg19 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HWK/ 1576739352 John Stamatoyannopoulos, UW bc56a075054dbaeae27c9116f9bcda5d https://www.encodeproject.org/files/ENCFF001HVW/@@download/ENCFF001HVW.bam archived s3://encode-public/2011/06/25/31f4457e-3470-4d44-84cd-91d409d8c9ed/ENCFF001HVW.bam Lab custom hg19 archived low read length ENCFF001HVX bigWig bigWig raw signal hg19 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HVW/ 251566999 John Stamatoyannopoulos, UW 966f0d46c9c00a979a782356b65254aa https://www.encodeproject.org/files/ENCFF001HVX/@@download/ENCFF001HVX.bigWig archived s3://encode-public/2011/06/25/372b0291-22fc-4ead-b438-c1658ac01896/ENCFF001HVX.bigWig Lab custom hg19 archived low read length ENCFF001HWK fastq fastq reads ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 1645318486 John Stamatoyannopoulos, UW f05f4cdc362f7c5c716059a04a8bc089 https://www.encodeproject.org/files/ENCFF001HWK/@@download/ENCFF001HWK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/d4f286bc-42e1-4d98-bca7-eac0077a6e6a/ENCFF001HWK.fastq.gz low read length ENCFF598VBU bam bam unfiltered alignments GRCh38 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HWK/ 1966521797 ENCODE Processing Pipeline d5ba7a8f2b489ffca74240e01c18bd82 https://www.encodeproject.org/files/ENCFF598VBU/@@download/ENCFF598VBU.bam released s3://encode-public/2016/08/09/30c05a28-eb2f-4b1d-a3f3-d38cc8f8e193/ENCFF598VBU.bam ENCODE3 GRCh38 archived low read length ENCFF662VGC bam bam alignments GRCh38 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HWK/ 1453245041 ENCODE Processing Pipeline 4af7c047e1d3279bc824719ac37764ac https://www.encodeproject.org/files/ENCFF662VGC/@@download/ENCFF662VGC.bam released s3://encode-public/2016/08/09/fd9b1674-e4de-49aa-b4a7-6a1addd6a197/ENCFF662VGC.bam ENCODE3 GRCh38 archived low read length ENCFF086VGJ bam bam unfiltered alignments hg19 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HWK/ 1955125822 ENCODE Processing Pipeline dd777b46f4dd3a4c5ec684ed2efbf00b https://www.encodeproject.org/files/ENCFF086VGJ/@@download/ENCFF086VGJ.bam released s3://encode-public/2016/11/13/63eeafc6-1938-45e0-8ea6-4b7dba23aeae/ENCFF086VGJ.bam ENCODE3 hg19 archived low read length ENCFF621QAX bam bam alignments hg19 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HWK/ 1453848415 ENCODE Processing Pipeline 0f11eaed227f02a902ff6325c60f719c https://www.encodeproject.org/files/ENCFF621QAX/@@download/ENCFF621QAX.bam released s3://encode-public/2016/11/13/ccfa51b4-d1cb-4a2a-92b7-c0e903f0eb2d/ENCFF621QAX.bam ENCODE3 hg19 archived low read length ENCFF275GZI bam bam unfiltered alignments GRCh38 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HWK/ 1922400850 ENCODE Processing Pipeline d3ac8a41b09a82310d7873847294b2ea https://www.encodeproject.org/files/ENCFF275GZI/@@download/ENCFF275GZI.bam released s3://encode-public/2020/08/06/b9f6b81f-9489-423f-92b4-6f4804188f90/ENCFF275GZI.bam ENCODE4 GRCh38 released low read length ENCFF387ENN bam bam alignments GRCh38 ENCSR000DXA Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HWK/ 1571459141 ENCODE Processing Pipeline c0cbed61b41ab90968e74e4f7d813c0b https://www.encodeproject.org/files/ENCFF387ENN/@@download/ENCFF387ENN.bam released s3://encode-public/2020/08/06/049b163c-eb3a-4dcf-aa5d-3a4cb1cd7a9c/ENCFF387ENN.bam ENCODE4 GRCh38 released low read length ENCFF000WIQ fastq fastq reads ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 193195410 Michael Snyder, Stanford 4871b994ee9cf568e255d5cb89ca416e https://www.encodeproject.org/files/ENCFF000WIQ/@@download/ENCFF000WIQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/87b170b7-f311-4aff-bc35-9e18a0b99722/ENCFF000WIQ.fastq.gz insufficient read length extremely low read depth ENCFF000WIR bam bam alignments hg19 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIQ/ 243328608 Michael Snyder, Stanford d4bd76edbbf787b493c7242a87c265b6 https://www.encodeproject.org/files/ENCFF000WIR/@@download/ENCFF000WIR.bam archived s3://encode-public/2012/07/01/50bfd14b-873e-4d6e-b1d5-16529ad0d5d2/ENCFF000WIR.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WIS bam bam alignments hg19 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WIX/ 371154797 Michael Snyder, Stanford e77b46a71d7c1091d25b1eb334ed74b0 https://www.encodeproject.org/files/ENCFF000WIS/@@download/ENCFF000WIS.bam archived s3://encode-public/2012/07/01/1ac59d3e-bfb0-4e96-91f5-295d214831f1/ENCFF000WIS.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WIT bigWig bigWig signal hg19 ENCSR000EAO Control ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 302196456 Michael Snyder, Stanford b64e8405402f485e0f5b1c28425392ee https://www.encodeproject.org/files/ENCFF000WIT/@@download/ENCFF000WIT.bigWig archived s3://encode-public/2012/07/01/538f6978-e3fa-4822-8c8d-36141ffeab53/ENCFF000WIT.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WIX fastq fastq reads ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 328707732 Michael Snyder, Stanford 7a2fa0bcc484d913ea7a337d31decaa6 https://www.encodeproject.org/files/ENCFF000WIX/@@download/ENCFF000WIX.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/84d564f2-116a-4305-b047-a717bb2814f8/ENCFF000WIX.fastq.gz insufficient read length extremely low read depth ENCFF799TFW bam bam unfiltered alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WIX/ 372741497 ENCODE Processing Pipeline bee41639712821465054c450aa67c40b https://www.encodeproject.org/files/ENCFF799TFW/@@download/ENCFF799TFW.bam released s3://encode-public/2016/10/26/7aeaf578-1de6-4ddc-93eb-86e93724fbf6/ENCFF799TFW.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF822OPC bam bam unfiltered alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIQ/, /files/ENCFF643CGH/ 244382776 ENCODE Processing Pipeline d36af1d3e05b2dc1651328c64edb5469 https://www.encodeproject.org/files/ENCFF822OPC/@@download/ENCFF822OPC.bam released s3://encode-public/2016/10/26/b03c1a7f-cea7-427c-aa1e-55568b68b4a9/ENCFF822OPC.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF065KDD bam bam alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIQ/, /files/ENCFF643CGH/ 155635152 ENCODE Processing Pipeline 67917541932d26ebe1893c9da905c948 https://www.encodeproject.org/files/ENCFF065KDD/@@download/ENCFF065KDD.bam released s3://encode-public/2016/10/26/7a65520f-4be6-4811-b31b-774bafa62387/ENCFF065KDD.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF419ZAO bam bam alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WIX/ 116079112 ENCODE Processing Pipeline 92627d1673366b3796ed275894f8c549 https://www.encodeproject.org/files/ENCFF419ZAO/@@download/ENCFF419ZAO.bam released s3://encode-public/2016/10/26/2694cb13-70ea-47e0-ac69-f532afc1386f/ENCFF419ZAO.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF359VOD bam bam alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WIQ/ 162207147 ENCODE Processing Pipeline 77ff8a7a7fdbf3ea914a28a0f869e0af https://www.encodeproject.org/files/ENCFF359VOD/@@download/ENCFF359VOD.bam released s3://encode-public/2020/10/27/79794e1d-1569-48cf-9150-59663f15d35b/ENCFF359VOD.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF391BMO bam bam alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WIX/ 122434189 ENCODE Processing Pipeline bfc401092e9e627a53b5848deb43f557 https://www.encodeproject.org/files/ENCFF391BMO/@@download/ENCFF391BMO.bam released s3://encode-public/2020/10/27/1a7175bb-f6d5-4ed8-8a05-d0b2ee801d9c/ENCFF391BMO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF412TOL bam bam unfiltered alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WIQ/ 232524584 ENCODE Processing Pipeline 0a9584eaefc8b3ca403d631f56a92d2c https://www.encodeproject.org/files/ENCFF412TOL/@@download/ENCFF412TOL.bam released s3://encode-public/2020/10/27/0bb0e318-960a-45fc-8e84-a1ff5a278039/ENCFF412TOL.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF230TMH bam bam unfiltered alignments GRCh38 ENCSR000EAO Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WIX/ 361108003 ENCODE Processing Pipeline 1d73b601fc88eb4fd93eafbc8c88aeb8 https://www.encodeproject.org/files/ENCFF230TMH/@@download/ENCFF230TMH.bam released s3://encode-public/2020/10/27/2cca3175-5476-45e7-afdd-3009bc1dcf66/ENCFF230TMH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF000YQS bigWig bigWig signal hg19 ENCSR000FAK Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 494503671 Sherman Weissman, Yale f5009f6a706f12cea60c92e589b4182c https://www.encodeproject.org/files/ENCFF000YQS/@@download/ENCFF000YQS.bigWig archived s3://encode-public/2010/12/02/8e9f0a79-17ac-4e56-9861-91837a6cec7a/ENCFF000YQS.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000YQT bam bam alignments hg19 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YRN/ 1272917436 Sherman Weissman, Yale 4ddf8960e6fc6b48f5d57e6af76bcbb5 https://www.encodeproject.org/files/ENCFF000YQT/@@download/ENCFF000YQT.bam archived s3://encode-public/2010/12/02/43a6ca37-a3ee-4875-b010-ddfc802ac52f/ENCFF000YQT.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000YQU bam bam alignments hg19 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000YRC/ 641370119 Sherman Weissman, Yale 22cd3a090accdbf5ee499a96b8ba5833 https://www.encodeproject.org/files/ENCFF000YQU/@@download/ENCFF000YQU.bam archived s3://encode-public/2010/12/02/5bc2396d-3615-40fc-9169-27a3a07e8ce7/ENCFF000YQU.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000YRC fastq fastq reads ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 single-ended 486280250 Sherman Weissman, Yale 081854edfb71f333a034d493de8a1f2e https://www.encodeproject.org/files/ENCFF000YRC/@@download/ENCFF000YRC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/545ec524-d04f-4886-a948-2c4632d96c93/ENCFF000YRC.fastq.gz low read depth insufficient read length ENCFF000YRN fastq fastq reads ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 single-ended 934665740 Sherman Weissman, Yale 86a57ac8db19b3c843858349f3261fc0 https://www.encodeproject.org/files/ENCFF000YRN/@@download/ENCFF000YRN.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/9263d3b3-47fe-47e2-8633-4066f629b609/ENCFF000YRN.fastq.gz low read depth insufficient read length ENCFF137XKW bam bam unfiltered alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000YRC/ 644354728 ENCODE Processing Pipeline 8dbb81ff18f14c4713779e401a7a5989 https://www.encodeproject.org/files/ENCFF137XKW/@@download/ENCFF137XKW.bam released s3://encode-public/2016/10/26/20c6e88d-9fc5-4151-9ce6-c154645dadec/ENCFF137XKW.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF194YCE bam bam unfiltered alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YRN/, /files/ENCFF643CGH/ 1277889640 ENCODE Processing Pipeline 82a0793374781a531b242d5d6475eacd https://www.encodeproject.org/files/ENCFF194YCE/@@download/ENCFF194YCE.bam released s3://encode-public/2016/10/26/e5ce6cab-a218-414b-bbc2-97fa38209071/ENCFF194YCE.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF123YHB bam bam alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000YRC/ 366657651 ENCODE Processing Pipeline 2e2cf1308bd71921b05a1936dfce93b9 https://www.encodeproject.org/files/ENCFF123YHB/@@download/ENCFF123YHB.bam released s3://encode-public/2016/10/26/a74d5adc-9c01-444f-8709-cf1cb82d5e3c/ENCFF123YHB.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF332BFE bam bam alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YRN/, /files/ENCFF643CGH/ 593267537 ENCODE Processing Pipeline 8f1b402810c92fb32794695573b174b7 https://www.encodeproject.org/files/ENCFF332BFE/@@download/ENCFF332BFE.bam released s3://encode-public/2016/10/26/5fe8b529-2fd7-4824-869a-c862f3d5769a/ENCFF332BFE.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF110PKU bam bam unfiltered alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000YRC/, /files/ENCFF110MCL/ 605629048 ENCODE Processing Pipeline 995576e910b2e2e08875821e8cb8f7fb https://www.encodeproject.org/files/ENCFF110PKU/@@download/ENCFF110PKU.bam released s3://encode-public/2020/10/27/43ccf284-f338-479c-95a4-a94c0600a895/ENCFF110PKU.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF602PYE bam bam unfiltered alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YRN/, /files/ENCFF110MCL/ 1198126138 ENCODE Processing Pipeline a0215bb923b0976105b20a8933d856a4 https://www.encodeproject.org/files/ENCFF602PYE/@@download/ENCFF602PYE.bam released s3://encode-public/2020/10/27/509b9b8e-663c-4faf-b351-a93c78287fe2/ENCFF602PYE.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF039CRW bam bam alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000YRC/, /files/ENCFF110MCL/ 376714404 ENCODE Processing Pipeline b3b26f424e8fab93b3861eac080fa6ec https://www.encodeproject.org/files/ENCFF039CRW/@@download/ENCFF039CRW.bam released s3://encode-public/2020/10/27/0cf4d91f-f4e6-494f-8325-ee8af1167c66/ENCFF039CRW.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF146ENO bam bam alignments GRCh38 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YRN/, /files/ENCFF110MCL/ 527992599 ENCODE Processing Pipeline 9d1975d61a563dcac9b0b8a6b92f41b8 https://www.encodeproject.org/files/ENCFF146ENO/@@download/ENCFF146ENO.bam released s3://encode-public/2020/10/27/030e1bc3-e356-4cbf-a8cd-56fbf3b6fda5/ENCFF146ENO.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF805FPU bam bam unfiltered alignments hg19 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF807MUK/, /files/ENCFF000YRC/ 642679959 ENCODE Processing Pipeline 1fac513b6ecbef2c1ce439b8778341ba https://www.encodeproject.org/files/ENCFF805FPU/@@download/ENCFF805FPU.bam released s3://encode-public/2017/07/11/a7206937-f2ff-48f7-b7e4-941d2f242f87/ENCFF805FPU.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF679XFJ bam bam alignments hg19 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF807MUK/, /files/ENCFF000YRC/ 367124278 ENCODE Processing Pipeline dbc7e1e6cdf54952e1515df0ad617093 https://www.encodeproject.org/files/ENCFF679XFJ/@@download/ENCFF679XFJ.bam released s3://encode-public/2017/07/11/3e9d3bf4-508d-431c-a10c-dcfb53083764/ENCFF679XFJ.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF898GNN bam bam unfiltered alignments hg19 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YRN/, /files/ENCFF807MUK/ 1274158275 ENCODE Processing Pipeline 8143404ad067a5a89a62c715a25551cf https://www.encodeproject.org/files/ENCFF898GNN/@@download/ENCFF898GNN.bam released s3://encode-public/2017/07/11/400f9895-2ccf-432c-8fc0-588160ecc09e/ENCFF898GNN.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF408YZH bam bam alignments hg19 ENCSR000FAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YRN/, /files/ENCFF807MUK/ 594014618 ENCODE Processing Pipeline 61add532de0d33c6a2da5513513cb07a https://www.encodeproject.org/files/ENCFF408YZH/@@download/ENCFF408YZH.bam released s3://encode-public/2017/07/11/e01d7b0a-9fae-4e67-9008-eb32048b5ab9/ENCFF408YZH.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF542ROM fastq fastq reads ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 1 1_1 50 single-ended 1600016048 Alexander Hoffmann, UCLA 1743cf1287ca1bc3964628699d1d6dda SRA:SRR16812126 https://www.encodeproject.org/files/ENCFF542ROM/@@download/ENCFF542ROM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2021/05/26/ba5c7827-41ed-41b5-8a74-02264de737ad/ENCFF542ROM.fastq.gz ENCFF666XOZ fastq fastq reads ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 single-ended 1652608686 Alexander Hoffmann, UCLA f09efb08466abfcc7275311736a97698 SRA:SRR16812124 https://www.encodeproject.org/files/ENCFF666XOZ/@@download/ENCFF666XOZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2021/05/26/3db43c96-a645-4e76-8874-236fd5fb6b48/ENCFF666XOZ.fastq.gz ENCFF451SQE fastq fastq reads ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 1 1_1 50 single-ended 1681727024 Alexander Hoffmann, UCLA 7f1ca0a49dd06bd1180bd70d55969fd4 SRA:SRR16812127 https://www.encodeproject.org/files/ENCFF451SQE/@@download/ENCFF451SQE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2021/05/26/c84d3dd6-dd05-4b96-b112-6c4893b587ed/ENCFF451SQE.fastq.gz ENCFF495GLD fastq fastq reads ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 single-ended 1766512285 Alexander Hoffmann, UCLA 6bbf4985a8f287d80acef47fecf27ca2 SRA:SRR16812125 https://www.encodeproject.org/files/ENCFF495GLD/@@download/ENCFF495GLD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2021/05/26/b2790270-cc6c-4d66-8b37-12d26799af5b/ENCFF495GLD.fastq.gz ENCFF434ZFF bam bam unfiltered alignments mm10 ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 /files/ENCFF666XOZ/, /files/ENCFF495GLD/, /files/ENCFF309GLL/ 4100960717 ENCODE Processing Pipeline a6ff4462bab108c83d2e2a4cef1536f3 https://www.encodeproject.org/files/ENCFF434ZFF/@@download/ENCFF434ZFF.bam released s3://encode-public/2021/07/13/6fee9cef-f982-4a6d-b406-5e157278888f/ENCFF434ZFF.bam ENCODE4 v1.9.0 mm10 released ENCFF607UCH bam bam alignments mm10 ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 2 2_1 50 /files/ENCFF666XOZ/, /files/ENCFF495GLD/, /files/ENCFF309GLL/ 3126514551 ENCODE Processing Pipeline c7e842ba4d5d77711a52c5bcc665cd46 https://www.encodeproject.org/files/ENCFF607UCH/@@download/ENCFF607UCH.bam released s3://encode-public/2021/07/13/06345210-a7a8-413b-9b1c-0a7a3c02df1d/ENCFF607UCH.bam ENCODE4 v1.9.0 mm10 released ENCFF393WUJ bam bam unfiltered alignments mm10 ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 1 1_1 50 /files/ENCFF451SQE/, /files/ENCFF542ROM/, /files/ENCFF309GLL/ 3945450652 ENCODE Processing Pipeline 4bb41aab89066a276bb0e6b9385d4383 https://www.encodeproject.org/files/ENCFF393WUJ/@@download/ENCFF393WUJ.bam released s3://encode-public/2021/07/13/c723894a-8828-4075-8f16-f37b644e5424/ENCFF393WUJ.bam ENCODE4 v1.9.0 mm10 released ENCFF355VBZ bam bam alignments mm10 ENCSR601NNP Control ChIP-seq /mouse-donors/ENCDO072AAA/ CL:0000235 macrophage primary cell Mus musculus DNA formaldehyde 2021-07-21 GGR 350-480 1 1_1 50 /files/ENCFF451SQE/, /files/ENCFF542ROM/, /files/ENCFF309GLL/ 2981399763 ENCODE Processing Pipeline 4b413a6e0f1f793e0912293a6461a8de https://www.encodeproject.org/files/ENCFF355VBZ/@@download/ENCFF355VBZ.bam released s3://encode-public/2021/07/13/3499f0dc-f714-49d7-bb91-391b173d107d/ENCFF355VBZ.bam ENCODE4 v1.9.0 mm10 released ENCFF000VWA bam bam alignments hg19 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000VWD/ 238723059 Michael Snyder, Stanford 7c9e543fcea891a7918637d3c4e4ddbf https://www.encodeproject.org/files/ENCFF000VWA/@@download/ENCFF000VWA.bam archived s3://encode-public/2012/07/01/d6da06a9-2c98-4c57-85de-af7782b16cee/ENCFF000VWA.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000VWB bam bam alignments hg19 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VWK/ 213403691 Michael Snyder, Stanford 164ca3305c92a330ad224241e9ef5302 https://www.encodeproject.org/files/ENCFF000VWB/@@download/ENCFF000VWB.bam archived s3://encode-public/2012/07/01/9e3a7429-93b8-44a2-b07b-140458b5c6bb/ENCFF000VWB.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000VWC bigWig bigWig signal hg19 ENCSR000EAF Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 299628361 Michael Snyder, Stanford d67b78875cc503c33fc5e69cd84be4dd https://www.encodeproject.org/files/ENCFF000VWC/@@download/ENCFF000VWC.bigWig archived s3://encode-public/2012/07/01/3512d1f2-7a0a-4c36-b4af-d520f20998aa/ENCFF000VWC.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000VWD fastq fastq reads ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 187238043 Michael Snyder, Stanford 9c0b0fe7f7e25b2766d8c4bf554d1127 https://www.encodeproject.org/files/ENCFF000VWD/@@download/ENCFF000VWD.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/c46d5630-eb90-44c1-9e36-e0ef05cb8acb/ENCFF000VWD.fastq.gz insufficient read length extremely low read depth ENCFF000VWK fastq fastq reads ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 167934663 Michael Snyder, Stanford 7de3ecb7579c73f505c8e1da94b6d8e3 https://www.encodeproject.org/files/ENCFF000VWK/@@download/ENCFF000VWK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/92873b18-d0b5-4997-a92f-1135b3348683/ENCFF000VWK.fastq.gz insufficient read length extremely low read depth ENCFF545DZO bam bam alignments hg19 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF807MUK/, /files/ENCFF000VWK/ 128557405 ENCODE Processing Pipeline e2fca30d1d37516162e082301e577b27 https://www.encodeproject.org/files/ENCFF545DZO/@@download/ENCFF545DZO.bam released s3://encode-public/2016/08/19/fad70b3e-059c-486c-988c-8ca2607a047d/ENCFF545DZO.bam ENCODE3 hg19 archived insufficient read length extremely low read depth ENCFF268MJK bam bam unfiltered alignments hg19 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF807MUK/, /files/ENCFF000VWD/ 239152416 ENCODE Processing Pipeline bf54bbb5d1a64dd817bf453d49191749 https://www.encodeproject.org/files/ENCFF268MJK/@@download/ENCFF268MJK.bam released s3://encode-public/2016/08/19/302fd779-63f1-4150-91e1-06a6e0a48604/ENCFF268MJK.bam ENCODE3 hg19 archived insufficient read length extremely low read depth ENCFF124OQN bam bam unfiltered alignments hg19 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF807MUK/, /files/ENCFF000VWK/ 213716284 ENCODE Processing Pipeline b8b64d76292c6436d1a642ec89770a01 https://www.encodeproject.org/files/ENCFF124OQN/@@download/ENCFF124OQN.bam released s3://encode-public/2016/08/19/e8ef4c69-5482-44ae-a3a8-8bbc8de8a6cd/ENCFF124OQN.bam ENCODE3 hg19 archived insufficient read length extremely low read depth ENCFF110OHA bam bam alignments hg19 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF807MUK/, /files/ENCFF000VWD/ 145526674 ENCODE Processing Pipeline 855a8ad46d29ebb5849cdf4f92ab1927 https://www.encodeproject.org/files/ENCFF110OHA/@@download/ENCFF110OHA.bam released s3://encode-public/2016/08/19/9817640f-415c-4053-9473-a4b6912e7e96/ENCFF110OHA.bam ENCODE3 hg19 archived insufficient read length extremely low read depth ENCFF364HXC bam bam unfiltered alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000VWK/ 214272472 ENCODE Processing Pipeline 1470177a72d233d6a232ebde6d6bf311 https://www.encodeproject.org/files/ENCFF364HXC/@@download/ENCFF364HXC.bam released s3://encode-public/2016/10/29/9f864e60-6995-4c05-85b8-403e9c17d58e/ENCFF364HXC.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF477ZKJ bam bam alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000VWK/ 128703541 ENCODE Processing Pipeline 4ae1267850fffea805a8f82460e4b26b https://www.encodeproject.org/files/ENCFF477ZKJ/@@download/ENCFF477ZKJ.bam released s3://encode-public/2016/10/29/4b9ed21b-66ff-4cd4-b408-b5807b186c8d/ENCFF477ZKJ.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF487SIK bam bam unfiltered alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VWD/ 239788843 ENCODE Processing Pipeline 4ab98e7f60fe8b4d78a71f4aed892342 https://www.encodeproject.org/files/ENCFF487SIK/@@download/ENCFF487SIK.bam released s3://encode-public/2016/10/29/a21f3efb-e0c4-40d0-afa1-0cf53282a757/ENCFF487SIK.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF710SMS bam bam alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VWD/ 145413078 ENCODE Processing Pipeline c78d42aa29fe6deb0dde068aed8f1b50 https://www.encodeproject.org/files/ENCFF710SMS/@@download/ENCFF710SMS.bam released s3://encode-public/2016/10/29/0eafd172-c023-4875-b8fb-83ceebf8aeb3/ENCFF710SMS.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF774BHG bam bam unfiltered alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWD/ 226799500 ENCODE Processing Pipeline 236e6562ea9ea483a32cbfde764d6c1a https://www.encodeproject.org/files/ENCFF774BHG/@@download/ENCFF774BHG.bam released s3://encode-public/2020/11/05/7aa5b50a-47cd-4227-a82a-6feef48a9659/ENCFF774BHG.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length extremely low read depth ENCFF850JHT bam bam unfiltered alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWK/ 203114295 ENCODE Processing Pipeline 498f0fe664f98baeb810e669b228bc85 https://www.encodeproject.org/files/ENCFF850JHT/@@download/ENCFF850JHT.bam released s3://encode-public/2020/11/05/0890740b-915c-41cd-8999-48a4086e883f/ENCFF850JHT.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length extremely low read depth ENCFF863XTX bam bam alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWD/ 151142401 ENCODE Processing Pipeline 107125bd6f0c16e4d4817ae413f00d0b https://www.encodeproject.org/files/ENCFF863XTX/@@download/ENCFF863XTX.bam released s3://encode-public/2020/11/05/2ea529eb-612a-464a-a81a-ec0e6fe82ace/ENCFF863XTX.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length extremely low read depth ENCFF278NPZ bam bam alignments GRCh38 ENCSR000EAF Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWK/ 132381814 ENCODE Processing Pipeline 5d97c0d48d827ae3b0bf239a7d9dcc10 https://www.encodeproject.org/files/ENCFF278NPZ/@@download/ENCFF278NPZ.bam released s3://encode-public/2020/11/05/3c9843dd-8ad6-4dbd-b91e-8047eddcd67b/ENCFF278NPZ.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length extremely low read depth ENCFF002NIH fastq fastq reads ENCSR684VZM Control ChIP-seq /fly-donors/ENCDO520MKH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34292/'], '@type': ['Target', 'Item'], 'name': 'zf30C-dmelanogaster', 'label': 'zf30C', '@id': '/targets/zf30C-dmelanogaster/', 'title': 'zf30C (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1ef98d53-4ae1-42af-bbe5-9beb18befdfb', 'status': 'released'} dm3 2L 9748567 9771385 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1003476621 Kevin White, UChicago 9aa437153e12ad975c0f0cc3559ccfae https://www.encodeproject.org/files/ENCFF002NIH/@@download/ENCFF002NIH.fastq.gz Illumina HiSeq 4000 /files/ENCFF758KAD/ released s3://encode-public/2018/02/01/f0963712-e071-430c-b1ee-8c1ae0a9981d/ENCFF002NIH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF033JME bam bam alignments dm6 ENCSR684VZM Control ChIP-seq /fly-donors/ENCDO520MKH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34292/'], '@type': ['Target', 'Item'], 'name': 'zf30C-dmelanogaster', 'label': 'zf30C', '@id': '/targets/zf30C-dmelanogaster/', 'title': 'zf30C (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1ef98d53-4ae1-42af-bbe5-9beb18befdfb', 'status': 'released'} dm3 2L 9748567 9771385 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF002NIH/, /files/ENCFF479RCH/ 1327044565 Kevin White, UChicago aa606d881eabff84c52954f0af532767 https://www.encodeproject.org/files/ENCFF033JME/@@download/ENCFF033JME.bam released s3://encode-public/2018/02/02/2913051e-ea9b-438d-9e49-2e2f10ac3b72/ENCFF033JME.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF745JTU bigWig bigWig signal of unique reads dm6 ENCSR684VZM Control ChIP-seq /fly-donors/ENCDO520MKH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34292/'], '@type': ['Target', 'Item'], 'name': 'zf30C-dmelanogaster', 'label': 'zf30C', '@id': '/targets/zf30C-dmelanogaster/', 'title': 'zf30C (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1ef98d53-4ae1-42af-bbe5-9beb18befdfb', 'status': 'released'} dm3 2L 9748567 9771385 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF033JME/ 17639081 Kevin White, UChicago c08e9eb90528e9a1440dadafce5855b5 https://www.encodeproject.org/files/ENCFF745JTU/@@download/ENCFF745JTU.bigWig released s3://encode-public/2018/02/02/e193138a-a36a-4c3b-8ac2-a89347897ba9/ENCFF745JTU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF541MBJ bigWig bigWig read-depth normalized signal dm6 ENCSR684VZM Control ChIP-seq /fly-donors/ENCDO520MKH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34292/'], '@type': ['Target', 'Item'], 'name': 'zf30C-dmelanogaster', 'label': 'zf30C', '@id': '/targets/zf30C-dmelanogaster/', 'title': 'zf30C (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1ef98d53-4ae1-42af-bbe5-9beb18befdfb', 'status': 'released'} dm3 2L 9748567 9771385 DNA 2018-02-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF033JME/ 17699896 Kevin White, UChicago bcefea19846090c847aa697198326e60 https://www.encodeproject.org/files/ENCFF541MBJ/@@download/ENCFF541MBJ.bigWig released s3://encode-public/2018/02/02/2ac1931a-9cff-4149-b302-460e4b9b80b0/ENCFF541MBJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF568RNV fastq fastq reads ENCSR516NJR Control ChIP-seq /worm-donors/ENCDO129PBV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 652858464 Kevin White, UChicago b41fecf0d54fb4e6534f88f8ce1b705e https://www.encodeproject.org/files/ENCFF568RNV/@@download/ENCFF568RNV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/1e4d42dd-7cac-43ee-9e10-765026dd9522/ENCFF568RNV.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF982KER bam bam alignments ce11 ENCSR516NJR Control ChIP-seq /worm-donors/ENCDO129PBV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF568RNV/, /files/ENCFF586MOL/ 745161840 Kevin White, UChicago 773e91c962eaec5398400fd371c9fb9f https://www.encodeproject.org/files/ENCFF982KER/@@download/ENCFF982KER.bam released s3://encode-public/2018/05/31/d31484b9-1202-485c-ae94-a386dfa44ab1/ENCFF982KER.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF624XYO bigWig bigWig signal of unique reads ce11 ENCSR516NJR Control ChIP-seq /worm-donors/ENCDO129PBV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF982KER/ 10037919 Kevin White, UChicago 2eb29b13170e34d25d2a9a2ac959fc59 https://www.encodeproject.org/files/ENCFF624XYO/@@download/ENCFF624XYO.bigWig released s3://encode-public/2018/05/31/e9ed1674-407f-4774-b3c1-11012c7ea3ff/ENCFF624XYO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF958MZG bigWig bigWig read-depth normalized signal ce11 ENCSR516NJR Control ChIP-seq /worm-donors/ENCDO129PBV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181302/'], '@type': ['Target', 'Item'], 'name': 'alr-1-celegans', 'label': 'alr-1', '@id': '/targets/alr-1-celegans/', 'title': 'alr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7ece9911-3e8d-4a16-b3f1-3700c7356f65', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF982KER/ 10009383 Kevin White, UChicago 2687faad111cd11d5e18496e7b2cc5c8 https://www.encodeproject.org/files/ENCFF958MZG/@@download/ENCFF958MZG.bigWig released s3://encode-public/2018/05/31/8fbfd1cd-a2f7-4604-a875-f32067fe3eef/ENCFF958MZG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF453ROR fastq fastq reads ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 2157765288 Bradley Bernstein, Broad d18542f039a94f54eb80f1861cfd9678 SRA:SRR10389001 https://www.encodeproject.org/files/ENCFF453ROR/@@download/ENCFF453ROR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/f528adeb-d61a-4287-82ea-ce37868aad1a/ENCFF453ROR.fastq.gz ENCFF994AUP fastq fastq reads ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 2170616602 Bradley Bernstein, Broad da975cf89076a20d41d71fb23e00f6b9 SRA:SRR10389002 https://www.encodeproject.org/files/ENCFF994AUP/@@download/ENCFF994AUP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/49b222f7-00e4-4aba-9452-3250ec7ffc0a/ENCFF994AUP.fastq.gz ENCFF111KXF fastq fastq reads ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1233183814 Bradley Bernstein, Broad 92bb9380ae2a8686cc0d76122d8692f1 SRA:SRR10388999 https://www.encodeproject.org/files/ENCFF111KXF/@@download/ENCFF111KXF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/174d1ed5-efa4-4b4d-b447-685030ce428b/ENCFF111KXF.fastq.gz ENCFF376VQS fastq fastq reads ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1273808253 Bradley Bernstein, Broad e20faf40a2bbd5dbc81867717b50c682 SRA:SRR10389000 https://www.encodeproject.org/files/ENCFF376VQS/@@download/ENCFF376VQS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/93997b03-4ac0-41f8-becc-bbe15d1e9832/ENCFF376VQS.fastq.gz ENCFF690NFM bam bam unfiltered alignments hg19 ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF376VQS/, /files/ENCFF807MUK/, /files/ENCFF994AUP/, /files/ENCFF453ROR/, /files/ENCFF111KXF/ 6397153400 ENCODE Processing Pipeline 6b9658c37653dfe4153f81a6602a4549 https://www.encodeproject.org/files/ENCFF690NFM/@@download/ENCFF690NFM.bam released s3://encode-public/2019/08/12/12d706a1-33f9-4f04-aea2-9f6b7b4f1a9c/ENCFF690NFM.bam ENCODE3 hg19 archived ENCFF984GNG bam bam alignments GRCh38 ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF376VQS/, /files/ENCFF643CGH/, /files/ENCFF994AUP/, /files/ENCFF453ROR/, /files/ENCFF111KXF/ 5207795443 ENCODE Processing Pipeline 51e27cb22dcd0ff5b7ffdc8de07f921f https://www.encodeproject.org/files/ENCFF984GNG/@@download/ENCFF984GNG.bam released s3://encode-public/2019/08/12/2b1652d5-c144-43a1-97cf-fe0e21da594a/ENCFF984GNG.bam ENCODE3 GRCh38 archived ENCFF226LKE bam bam unfiltered alignments GRCh38 ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF376VQS/, /files/ENCFF643CGH/, /files/ENCFF994AUP/, /files/ENCFF453ROR/, /files/ENCFF111KXF/ 6413573250 ENCODE Processing Pipeline ec131abc3fe0ace14d7ca00903f5595f https://www.encodeproject.org/files/ENCFF226LKE/@@download/ENCFF226LKE.bam released s3://encode-public/2019/08/12/5ead1d36-c182-4d47-94b3-497e2c7f39dc/ENCFF226LKE.bam ENCODE3 GRCh38 archived ENCFF910ZLC bam bam alignments hg19 ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF376VQS/, /files/ENCFF807MUK/, /files/ENCFF994AUP/, /files/ENCFF453ROR/, /files/ENCFF111KXF/ 5199965677 ENCODE Processing Pipeline 891d52eb4918dea069081a113ddfdc7d https://www.encodeproject.org/files/ENCFF910ZLC/@@download/ENCFF910ZLC.bam released s3://encode-public/2019/08/12/7f205548-7251-4d71-81da-e9d3016bac68/ENCFF910ZLC.bam ENCODE3 hg19 archived ENCFF745MXB bam bam unfiltered alignments GRCh38 ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF376VQS/, /files/ENCFF453ROR/, /files/ENCFF110MCL/, /files/ENCFF994AUP/, /files/ENCFF111KXF/ 6356278573 ENCODE Processing Pipeline 11be4b10d1dd3329e4103a8073918bf8 https://www.encodeproject.org/files/ENCFF745MXB/@@download/ENCFF745MXB.bam released s3://encode-public/2020/09/19/89dc424c-857b-4980-9e5f-09bcfc92e11d/ENCFF745MXB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF823GGE bam bam alignments GRCh38 ENCSR538MSN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF376VQS/, /files/ENCFF453ROR/, /files/ENCFF110MCL/, /files/ENCFF994AUP/, /files/ENCFF111KXF/ 5198972218 ENCODE Processing Pipeline 61c33436042392541cbf93a326e57148 https://www.encodeproject.org/files/ENCFF823GGE/@@download/ENCFF823GGE.bam released s3://encode-public/2020/09/19/04eba0be-ab79-4ef6-920d-96c3a38ba1b6/ENCFF823GGE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF001HQW bam bam alignments hg19 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HRI/ 842391269 John Stamatoyannopoulos, UW a3b23daa86e235298f88d81aaf985422 https://www.encodeproject.org/files/ENCFF001HQW/@@download/ENCFF001HQW.bam archived s3://encode-public/2011/06/25/168fc972-f969-4a5d-a2a1-f29f163ba340/ENCFF001HQW.bam Lab custom hg19 archived low read depth, low read length ENCFF001HQX bigWig bigWig raw signal hg19 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HQW/ 193164976 John Stamatoyannopoulos, UW 99f32209179b3aee64f2b188f3cf75e9 https://www.encodeproject.org/files/ENCFF001HQX/@@download/ENCFF001HQX.bigWig archived s3://encode-public/2011/06/25/210812ff-fb4b-4e52-9959-b657f8a0601b/ENCFF001HQX.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HRI fastq fastq reads ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 889280613 John Stamatoyannopoulos, UW 786523294bf32837b72296d57371b477 https://www.encodeproject.org/files/ENCFF001HRI/@@download/ENCFF001HRI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/819df954-56ff-4ed1-b327-ee7ba13e60d7/ENCFF001HRI.fastq.gz low read depth, low read length ENCFF067VME bam bam unfiltered alignments GRCh38 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HRI/ 1078109000 ENCODE Processing Pipeline 7811868c8b968da98d655b41ad1880d9 https://www.encodeproject.org/files/ENCFF067VME/@@download/ENCFF067VME.bam released s3://encode-public/2016/08/09/e5f8b497-8516-4bd9-9184-607627bc8097/ENCFF067VME.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF741CYK bam bam alignments GRCh38 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HRI/ 776507457 ENCODE Processing Pipeline a79a8cd4a1e70725c2136b951422d04e https://www.encodeproject.org/files/ENCFF741CYK/@@download/ENCFF741CYK.bam released s3://encode-public/2016/08/09/7cdb2b0b-f5fd-49fe-8617-185cd4b84da7/ENCFF741CYK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF468MCN bam bam unfiltered alignments hg19 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HRI/ 1072859406 ENCODE Processing Pipeline cc07552a44b3993ac89ad01d144a1875 https://www.encodeproject.org/files/ENCFF468MCN/@@download/ENCFF468MCN.bam released s3://encode-public/2016/11/13/961555bd-389d-43b6-817b-249c6710ab9f/ENCFF468MCN.bam ENCODE3 hg19 archived low read depth, low read length ENCFF138KCG bam bam alignments hg19 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HRI/ 776853323 ENCODE Processing Pipeline c74a60e599d99cb34e14eb71908245d6 https://www.encodeproject.org/files/ENCFF138KCG/@@download/ENCFF138KCG.bam released s3://encode-public/2016/11/13/9d64c35d-ab5c-4a4f-8eaa-519528a51ca0/ENCFF138KCG.bam ENCODE3 hg19 archived low read depth, low read length ENCFF464HTY bam bam unfiltered alignments GRCh38 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HRI/, /files/ENCFF110MCL/ 1058357336 ENCODE Processing Pipeline 9438535008e9c956fa1f7ebf455b6546 https://www.encodeproject.org/files/ENCFF464HTY/@@download/ENCFF464HTY.bam released s3://encode-public/2020/08/06/f9f84496-6d0b-44f2-9680-99235e4a7cf1/ENCFF464HTY.bam ENCODE4 GRCh38 released low read depth, low read length ENCFF659YIK bam bam alignments GRCh38 ENCSR000DVB Control ChIP-seq /human-donors/ENCDO333AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HRI/, /files/ENCFF110MCL/ 843864901 ENCODE Processing Pipeline a6d229c49f5ebf664fecbb55ac30129b https://www.encodeproject.org/files/ENCFF659YIK/@@download/ENCFF659YIK.bam released s3://encode-public/2020/08/06/abadfe57-07a3-4ff1-aa16-cc5d19487321/ENCFF659YIK.bam ENCODE4 GRCh38 released low read depth, low read length ENCFF000RBM bam bam alignments hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RBV/ 855730050 Richard Myers, HAIB c4d5fc40770f94014b4e502ebc5b86b5 https://www.encodeproject.org/files/ENCFF000RBM/@@download/ENCFF000RBM.bam archived s3://encode-public/2012/01/23/bde55c7c-68a5-4b0b-b093-482895f1b85d/ENCFF000RBM.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000RBP bam bam alignments hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RBY/ 984088962 Richard Myers, HAIB 2b0e56498c161b1e6ed5edd95bbb8913 https://www.encodeproject.org/files/ENCFF000RBP/@@download/ENCFF000RBP.bam archived s3://encode-public/2012/01/23/9028edf9-e7ca-4c68-a1ca-3479a9208ab9/ENCFF000RBP.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000RBQ bigWig bigWig raw signal hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 10014892 Richard Myers, HAIB 7128a1d7eb96e2e713062c31e24535c5 https://www.encodeproject.org/files/ENCFF000RBQ/@@download/ENCFF000RBQ.bigWig archived s3://encode-public/2012/01/23/1c0c289c-7bd8-421b-8e27-0763510436c0/ENCFF000RBQ.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000RBR bigWig bigWig raw signal hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 16576346 Richard Myers, HAIB d13eb4e6ca10656f3b086190ac02ea05 https://www.encodeproject.org/files/ENCFF000RBR/@@download/ENCFF000RBR.bigWig archived s3://encode-public/2012/01/23/8fbd6b6e-bac5-4a85-9a7d-3d1a103ad072/ENCFF000RBR.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000RBV fastq fastq reads ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 718368185 Richard Myers, HAIB 5b10188412b2124c42eb9f7816d53a77 https://www.encodeproject.org/files/ENCFF000RBV/@@download/ENCFF000RBV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/32e41887-4e43-4950-a603-d2907d32d59f/ENCFF000RBV.fastq.gz mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000RBY fastq fastq reads ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 1657425655 Richard Myers, HAIB 5a26f25f4689df9531e3e42f1e9d20e8 https://www.encodeproject.org/files/ENCFF000RBY/@@download/ENCFF000RBY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/1c066cd0-0a95-41a6-9fef-c65348d37ee5/ENCFF000RBY.fastq.gz mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF707NVX bam bam unfiltered alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RBV/ 894001143 ENCODE Processing Pipeline 04730952807c9a655ccb64fb5cce015b https://www.encodeproject.org/files/ENCFF707NVX/@@download/ENCFF707NVX.bam released s3://encode-public/2016/10/26/0585b9a5-d87c-4b00-953b-c24b9710f67f/ENCFF707NVX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF423QEN bam bam unfiltered alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RBY/, /files/ENCFF643CGH/ 1912993976 ENCODE Processing Pipeline 603772dfce42045fb56e484f22bafd9b https://www.encodeproject.org/files/ENCFF423QEN/@@download/ENCFF423QEN.bam released s3://encode-public/2016/10/26/96bfb0ba-a5ea-46e5-a5c9-3ec45354f368/ENCFF423QEN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF154IKH bam bam alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RBV/ 354581506 ENCODE Processing Pipeline 81bf3cba8d663e4b9b5b1e6f28673d9e https://www.encodeproject.org/files/ENCFF154IKH/@@download/ENCFF154IKH.bam released s3://encode-public/2016/10/26/d1a42913-79a8-48ac-81e2-7208b21de059/ENCFF154IKH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF536CFH bam bam alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RBY/, /files/ENCFF643CGH/ 524949959 ENCODE Processing Pipeline 08e3ec5da7fc0e86a213d236f9de0845 https://www.encodeproject.org/files/ENCFF536CFH/@@download/ENCFF536CFH.bam released s3://encode-public/2016/10/26/ee9f6ed5-1f9c-4901-aca2-0667e6027fa8/ENCFF536CFH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF322LWJ bam bam unfiltered alignments hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RBV/ 892909194 ENCODE Processing Pipeline ee5219998454afa9782fc1cdc663345e https://www.encodeproject.org/files/ENCFF322LWJ/@@download/ENCFF322LWJ.bam released s3://encode-public/2016/11/13/fc83d709-aaae-4e66-ae34-f0bd14ee0676/ENCFF322LWJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF816MYK bam bam unfiltered alignments hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RBY/, /files/ENCFF807MUK/ 1909733629 ENCODE Processing Pipeline d1e75de7285a3ccfb55e2eb7c5ba5c17 https://www.encodeproject.org/files/ENCFF816MYK/@@download/ENCFF816MYK.bam released s3://encode-public/2016/11/13/8bef460c-3c90-4742-a1bd-547cfc39e2c9/ENCFF816MYK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF410PKI bam bam alignments hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RBV/ 354635856 ENCODE Processing Pipeline f6d140448d1a2f06d23b3bdb4d5c9217 https://www.encodeproject.org/files/ENCFF410PKI/@@download/ENCFF410PKI.bam released s3://encode-public/2016/11/13/a9b7228b-0fcc-4551-925e-de63a518bbf6/ENCFF410PKI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF658OWV bam bam alignments hg19 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RBY/, /files/ENCFF807MUK/ 525056812 ENCODE Processing Pipeline 4b7c578f628d568819fe10352e345a08 https://www.encodeproject.org/files/ENCFF658OWV/@@download/ENCFF658OWV.bam released s3://encode-public/2016/11/13/e51d1ab3-8369-4da8-b14f-f9c85a543234/ENCFF658OWV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF648VSZ bam bam unfiltered alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000RBY/ 1928820626 ENCODE Processing Pipeline c5a90dfd38eabbde33d1c885413af393 https://www.encodeproject.org/files/ENCFF648VSZ/@@download/ENCFF648VSZ.bam released s3://encode-public/2020/10/28/d83f79ac-b65c-4c73-b95d-daa641c13f64/ENCFF648VSZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF447EDP bam bam alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000RBV/ 328628654 ENCODE Processing Pipeline bb8029cd7ac152a518f35b383ab6d9ad https://www.encodeproject.org/files/ENCFF447EDP/@@download/ENCFF447EDP.bam released s3://encode-public/2020/10/28/ecc5ae5c-2642-4d03-b7fd-3c5f8a965e3d/ENCFF447EDP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF439NXJ bam bam alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000RBY/ 578097224 ENCODE Processing Pipeline 3ab6986d7fc985836b98faeea689f46f https://www.encodeproject.org/files/ENCFF439NXJ/@@download/ENCFF439NXJ.bam released s3://encode-public/2020/10/28/8a32323d-d9b0-4a5d-a2ee-828d575986e2/ENCFF439NXJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF004YQK bam bam unfiltered alignments GRCh38 ENCSR000BGN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000RBV/ 672614879 ENCODE Processing Pipeline 986968f4bd4fa92e5a082cda11a32b41 https://www.encodeproject.org/files/ENCFF004YQK/@@download/ENCFF004YQK.bam released s3://encode-public/2020/10/28/557f2dbb-66b3-48da-81cd-6be413e0a65b/ENCFF004YQK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000YCQ fastq fastq reads ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 single-ended 1296799135 Michael Snyder, Stanford de0e02b450925df233c6ddc8c5a46bdc https://www.encodeproject.org/files/ENCFF000YCQ/@@download/ENCFF000YCQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/84c1563c-90f9-44dd-9983-4ecc2f90670f/ENCFF000YCQ.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF000YCU bigWig bigWig signal hg19 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1, 2 1_1, 2_1 /files/ENCFF000YCW/ 426491170 Michael Snyder, Stanford 3157a07b16c78d46f1998867491ec75d https://www.encodeproject.org/files/ENCFF000YCU/@@download/ENCFF000YCU.bigWig archived s3://encode-public/2012/07/01/6c73a93d-3251-46a0-95ff-6a42a5398b5c/ENCFF000YCU.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF000YCW bam bam alignments hg19 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1, 2 1_1, 2_1 32 /files/ENCFF000YCQ/, /files/ENCFF000YCS/ 1184453077 Michael Snyder, Stanford c886800cea6c0889107eb32cf4e00eda https://www.encodeproject.org/files/ENCFF000YCW/@@download/ENCFF000YCW.bam archived s3://encode-public/2012/07/01/848ec7c1-bde1-4b98-b394-aa6d9fba7f1d/ENCFF000YCW.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF000YCS fastq fastq reads ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 single-ended 1120195698 Michael Snyder, Stanford 8a0d022403a95dcb0f47b03a8f05faf5 https://www.encodeproject.org/files/ENCFF000YCS/@@download/ENCFF000YCS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/d06160bf-fb05-4f5c-955a-c72e759ec24e/ENCFF000YCS.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF493KXS bam bam unfiltered alignments hg19 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000YCS/ 1236756344 ENCODE Processing Pipeline 0afd5a087a991c025dcf1e862eba4f56 https://www.encodeproject.org/files/ENCFF493KXS/@@download/ENCFF493KXS.bam released s3://encode-public/2016/08/23/aa07770f-a3c5-48bc-9cef-c1e367435163/ENCFF493KXS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF641ZIY bam bam unfiltered alignments hg19 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000YCQ/ 1442550634 ENCODE Processing Pipeline d3164cfea5c984f051ec432eec0e51f0 https://www.encodeproject.org/files/ENCFF641ZIY/@@download/ENCFF641ZIY.bam released s3://encode-public/2016/08/23/4db7358c-2edb-482a-aa4a-64ef628270b2/ENCFF641ZIY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF601AUG bam bam alignments hg19 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000YCS/ 751865295 ENCODE Processing Pipeline c83d8ffb6a0e0042bc29fa3b31d003a7 https://www.encodeproject.org/files/ENCFF601AUG/@@download/ENCFF601AUG.bam released s3://encode-public/2016/08/23/3310c433-2167-44f2-8180-a5932b44564b/ENCFF601AUG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF191DFR bam bam alignments hg19 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000YCQ/ 942116337 ENCODE Processing Pipeline f576f3b25fd65e112bd88bd289f4874a https://www.encodeproject.org/files/ENCFF191DFR/@@download/ENCFF191DFR.bam released s3://encode-public/2016/08/23/3cf9484f-3e0d-4baa-9e55-e94a5a599791/ENCFF191DFR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF646OIA bam bam unfiltered alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000YCS/ 1242675202 ENCODE Processing Pipeline 734040c46f2dffeb5742f6a369f3d1ae https://www.encodeproject.org/files/ENCFF646OIA/@@download/ENCFF646OIA.bam released s3://encode-public/2016/10/09/067df467-11a7-457b-b4ec-5c2cd3206100/ENCFF646OIA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF756TTQ bam bam unfiltered alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000YCQ/ 1450559148 ENCODE Processing Pipeline 6badf4c9e0cc6cc76fb7ca7f1da88a2e https://www.encodeproject.org/files/ENCFF756TTQ/@@download/ENCFF756TTQ.bam released s3://encode-public/2016/10/09/a7cc2e81-0d8c-4759-81b9-e84c289bd725/ENCFF756TTQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF494UKO bam bam alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000YCS/ 751432809 ENCODE Processing Pipeline 97bbab02442da76448c5ac87d892313f https://www.encodeproject.org/files/ENCFF494UKO/@@download/ENCFF494UKO.bam released s3://encode-public/2016/10/09/281ef9f7-72d3-4a7d-85c5-1e44c6d27fb2/ENCFF494UKO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF823WOO bam bam alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000YCQ/ 941656208 ENCODE Processing Pipeline 86ad1d9c82f960da43a2ae7e49cf54e4 https://www.encodeproject.org/files/ENCFF823WOO/@@download/ENCFF823WOO.bam released s3://encode-public/2016/10/09/6b02952e-9f3a-4dcd-8c8b-f4a4df5a011f/ENCFF823WOO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF225ASB bam bam unfiltered alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000YCS/ 1216046359 ENCODE Processing Pipeline 58f3e3b9756658ba43b99025059e421b https://www.encodeproject.org/files/ENCFF225ASB/@@download/ENCFF225ASB.bam released s3://encode-public/2020/09/03/f851b198-c610-4378-9da9-20b7c49d20dc/ENCFF225ASB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF065VLO bam bam alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000YCS/ 823074626 ENCODE Processing Pipeline 965081ae596b85fc55784ea3688c82c8 https://www.encodeproject.org/files/ENCFF065VLO/@@download/ENCFF065VLO.bam released s3://encode-public/2020/09/03/c06ed96d-5686-4394-9b87-a0fbc5ec0f73/ENCFF065VLO.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF413PMY bam bam alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000YCQ/, /files/ENCFF110MCL/ 1024708839 ENCODE Processing Pipeline d8afabda2deeb0ed982da81ff1baaad0 https://www.encodeproject.org/files/ENCFF413PMY/@@download/ENCFF413PMY.bam released s3://encode-public/2020/09/03/580c8a20-ce7b-40e7-8fd2-0798050ca90f/ENCFF413PMY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF113YTJ bam bam unfiltered alignments GRCh38 ENCSR000EFL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2012-05-14 ENCODE see document 1 1_1 36 /files/ENCFF000YCQ/, /files/ENCFF110MCL/ 1421027261 ENCODE Processing Pipeline 437ea818db6295888eda31687be48ffb https://www.encodeproject.org/files/ENCFF113YTJ/@@download/ENCFF113YTJ.bam released s3://encode-public/2020/09/03/bb40e363-61ef-4476-a83a-cd9805d3bda3/ENCFF113YTJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF001KYJ bam bam alignments mm9 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KYT/ 327865806 Bing Ren, UCSD adfc065417cdfe77060d3b5fdf998447 https://www.encodeproject.org/files/ENCFF001KYJ/@@download/ENCFF001KYJ.bam archived s3://encode-public/2011/12/23/69ea376c-431f-4fcb-9144-7cb9fc0ac287/ENCFF001KYJ.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KYK bam bam alignments mm9 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KYS/ 354968801 Bing Ren, UCSD 93efe344eca305f97c17ca168bb5a289 https://www.encodeproject.org/files/ENCFF001KYK/@@download/ENCFF001KYK.bam archived s3://encode-public/2011/12/23/0277a900-1486-48f8-af25-e21a2ae96c57/ENCFF001KYK.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KYM bigWig bigWig signal mm9 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KYJ/, /files/ENCFF001KYK/ 82139044 Bing Ren, UCSD d16681619ea91c90637331460fbc480d https://www.encodeproject.org/files/ENCFF001KYM/@@download/ENCFF001KYM.bigWig archived s3://encode-public/2011/12/23/ce30b46a-8515-4a59-beb9-efa43a455d54/ENCFF001KYM.bigWig Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KYS fastq fastq reads ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 single-ended 522973467 Bing Ren, UCSD bb69ba39ce57627e6a13d2ccec1e6a80 https://www.encodeproject.org/files/ENCFF001KYS/@@download/ENCFF001KYS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/161ac664-6c72-4658-ac18-8930063644f7/ENCFF001KYS.fastq.gz low read depth, low read length insufficient read depth ENCFF001KYT fastq fastq reads ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 single-ended 496674729 Bing Ren, UCSD d9c3637931b15a52607dd86a2aa722d2 https://www.encodeproject.org/files/ENCFF001KYT/@@download/ENCFF001KYT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/c08c3026-9c4a-4b1a-b747-a84af88731ab/ENCFF001KYT.fastq.gz low read depth, low read length insufficient read depth ENCFF446JCN bam bam unfiltered alignments mm10-minimal ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KYS/, /files/ENCFF806TVZ/ 617025162 J. Michael Cherry, Stanford b6e153aaa83c6426ca3c0f37ed96dad8 https://www.encodeproject.org/files/ENCFF446JCN/@@download/ENCFF446JCN.bam archived s3://encode-public/2015/02/04/6138fc9a-de1c-4810-aede-7e8385f89094/ENCFF446JCN.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF133ALJ bam bam unfiltered alignments mm10-minimal ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KYT/, /files/ENCFF806TVZ/ 581295626 J. Michael Cherry, Stanford c26cbd2ac805a191c68ac1ddd10b3032 https://www.encodeproject.org/files/ENCFF133ALJ/@@download/ENCFF133ALJ.bam archived s3://encode-public/2015/02/04/d9eca9b6-6f7e-4c45-8e60-a2d84060b890/ENCFF133ALJ.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF283CTW bam bam alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KYT/, /files/ENCFF018NEO/ 382485508 ENCODE Processing Pipeline 6ae1d3a985e825e9d71eb6b282440d1d https://www.encodeproject.org/files/ENCFF283CTW/@@download/ENCFF283CTW.bam released s3://encode-public/2016/04/28/cbde48a7-0b09-4a4b-abe1-f51b95cf0791/ENCFF283CTW.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF347BCY bam bam alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KYS/ 418937812 ENCODE Processing Pipeline 2b560cfb03c89ad0a1e7d9be0de1fb38 https://www.encodeproject.org/files/ENCFF347BCY/@@download/ENCFF347BCY.bam released s3://encode-public/2016/04/28/35c1fbe1-952b-418c-ae05-2055166e1b16/ENCFF347BCY.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF590YTJ bam bam unfiltered alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KYT/, /files/ENCFF018NEO/ 582192233 ENCODE Processing Pipeline c39d68c1c7b84569f35ef55d75b60742 https://www.encodeproject.org/files/ENCFF590YTJ/@@download/ENCFF590YTJ.bam released s3://encode-public/2016/07/06/9a148e37-5609-4e44-95cb-051cc5f034ae/ENCFF590YTJ.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF974HYX bam bam unfiltered alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KYS/ 617963667 ENCODE Processing Pipeline 231b69b3463d3fd7cb6e5e544307944f https://www.encodeproject.org/files/ENCFF974HYX/@@download/ENCFF974HYX.bam released s3://encode-public/2016/07/06/07074013-6f3d-4524-9b11-99064135bab9/ENCFF974HYX.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF574OYI bam bam alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KYT/, /files/ENCFF309GLL/ 411028633 ENCODE Processing Pipeline c8a6d3902e20af5fea24432fa152d417 https://www.encodeproject.org/files/ENCFF574OYI/@@download/ENCFF574OYI.bam released s3://encode-public/2020/10/12/d9e07d6c-e360-4ca2-86f3-30ba34ff591f/ENCFF574OYI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF009MYK bam bam alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KYS/, /files/ENCFF309GLL/ 450533491 ENCODE Processing Pipeline 1fedc57f825e552733b0982f464e3186 https://www.encodeproject.org/files/ENCFF009MYK/@@download/ENCFF009MYK.bam released s3://encode-public/2020/10/12/b55d7fc9-d1b4-47ee-868d-331f4145f86e/ENCFF009MYK.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF133FGY bam bam unfiltered alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KYT/, /files/ENCFF309GLL/ 570238764 ENCODE Processing Pipeline b02e41d49e7ee3becb2a418f7ef9448d https://www.encodeproject.org/files/ENCFF133FGY/@@download/ENCFF133FGY.bam released s3://encode-public/2020/10/12/d2f5cd51-f7d7-4887-b710-c5fcd5272685/ENCFF133FGY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF875JQG bam bam unfiltered alignments mm10 ENCSR000CCK Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002370 thymus tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KYS/, /files/ENCFF309GLL/ 604671495 ENCODE Processing Pipeline f95e3795bb634fc1a8ebe0fe73474c6a https://www.encodeproject.org/files/ENCFF875JQG/@@download/ENCFF875JQG.bam released s3://encode-public/2020/10/12/6d27b1ad-1ad0-496b-ba9d-31c6c5abc35d/ENCFF875JQG.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF107IGM fastq fastq reads ENCSR027VEH Control ChIP-seq /fly-donors/ENCDO646LMB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42736/'], '@type': ['Target', 'Item'], 'name': 'CG31365-dmelanogaster', 'label': 'CG31365', '@id': '/targets/CG31365-dmelanogaster/', 'title': 'CG31365 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ccaf4f5a-a9ed-4ed1-9cbf-cd8432b8444d', 'status': 'released'} dm3 3R 18939185 18960491 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 956324383 Kevin White, UChicago 8da112c3c28e02809d9104b7014095ed https://www.encodeproject.org/files/ENCFF107IGM/@@download/ENCFF107IGM.fastq.gz Illumina HiSeq 4000 /files/ENCFF664CIS/ released s3://encode-public/2018/05/29/1d66e9b0-c257-4104-8b82-da1a3ce60542/ENCFF107IGM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF660KSG bam bam alignments dm6 ENCSR027VEH Control ChIP-seq /fly-donors/ENCDO646LMB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42736/'], '@type': ['Target', 'Item'], 'name': 'CG31365-dmelanogaster', 'label': 'CG31365', '@id': '/targets/CG31365-dmelanogaster/', 'title': 'CG31365 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ccaf4f5a-a9ed-4ed1-9cbf-cd8432b8444d', 'status': 'released'} dm3 3R 18939185 18960491 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF107IGM/, /files/ENCFF479RCH/ 1270639767 Kevin White, UChicago 023b07500efe10806cd5435a5b9b9ac0 https://www.encodeproject.org/files/ENCFF660KSG/@@download/ENCFF660KSG.bam released s3://encode-public/2018/05/29/ec1bbf14-be84-404c-87cb-b4f30d54f0c4/ENCFF660KSG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF015VYS bigWig bigWig signal of unique reads dm6 ENCSR027VEH Control ChIP-seq /fly-donors/ENCDO646LMB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42736/'], '@type': ['Target', 'Item'], 'name': 'CG31365-dmelanogaster', 'label': 'CG31365', '@id': '/targets/CG31365-dmelanogaster/', 'title': 'CG31365 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ccaf4f5a-a9ed-4ed1-9cbf-cd8432b8444d', 'status': 'released'} dm3 3R 18939185 18960491 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF660KSG/ 17597579 Kevin White, UChicago 2e32ea52a74091d2ba2b050986d84710 https://www.encodeproject.org/files/ENCFF015VYS/@@download/ENCFF015VYS.bigWig released s3://encode-public/2018/05/30/8ca8c199-2e75-4088-a8d9-3e172b9e7f88/ENCFF015VYS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF339HNI bigWig bigWig read-depth normalized signal dm6 ENCSR027VEH Control ChIP-seq /fly-donors/ENCDO646LMB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42736/'], '@type': ['Target', 'Item'], 'name': 'CG31365-dmelanogaster', 'label': 'CG31365', '@id': '/targets/CG31365-dmelanogaster/', 'title': 'CG31365 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ccaf4f5a-a9ed-4ed1-9cbf-cd8432b8444d', 'status': 'released'} dm3 3R 18939185 18960491 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF660KSG/ 17629162 Kevin White, UChicago 28f43908ffbc3574a0b55507fcd2b1c7 https://www.encodeproject.org/files/ENCFF339HNI/@@download/ENCFF339HNI.bigWig released s3://encode-public/2018/05/30/7e9d1223-5140-4b1f-b983-a2a6a71aac8b/ENCFF339HNI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000QTO bam bam alignments hg19 ENCSR000BVV Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000QUI/ 1713427279 Richard Myers, HAIB 8e571fcd67f60ede4444d530509eabd5 https://www.encodeproject.org/files/ENCFF000QTO/@@download/ENCFF000QTO.bam archived s3://encode-public/2012/01/23/c62bd925-5b87-4f5f-806c-eceb5c6ff66b/ENCFF000QTO.bam Lab custom hg19 archived ENCFF000QTP bigWig bigWig raw signal hg19 ENCSR000BVV Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 207864288 Richard Myers, HAIB 34c1826ee236eb978b4a75b8d7fdf232 https://www.encodeproject.org/files/ENCFF000QTP/@@download/ENCFF000QTP.bigWig archived s3://encode-public/2012/01/23/f2f59066-cec9-4c2a-a61c-23f032c2d8ad/ENCFF000QTP.bigWig Lab custom hg19 archived ENCFF000QUI fastq fastq reads ENCSR000BVV Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 single-ended 1501497691 Richard Myers, HAIB 10482a5b02bb633b3c85e77d838e4d23 https://www.encodeproject.org/files/ENCFF000QUI/@@download/ENCFF000QUI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/b24d2ccb-d599-4f94-925e-c0f4b42fdc05/ENCFF000QUI.fastq.gz ENCFF965KLQ bam bam unfiltered alignments GRCh38 ENCSR000BVV Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000QUI/ 1895236196 ENCODE Processing Pipeline 50bf491854137800341b26c4a89cec5f https://www.encodeproject.org/files/ENCFF965KLQ/@@download/ENCFF965KLQ.bam released s3://encode-public/2020/10/27/8810fdda-a0d9-48b2-abcb-dcd96e82f7e0/ENCFF965KLQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF197RFW bam bam alignments GRCh38 ENCSR000BVV Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000QUI/ 1293878833 ENCODE Processing Pipeline 6441bd7f42c270db4cde34429ddb5244 https://www.encodeproject.org/files/ENCFF197RFW/@@download/ENCFF197RFW.bam released s3://encode-public/2020/10/27/3c90b4d1-ad97-4aea-8538-ad2157ccf4dc/ENCFF197RFW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF001NHR bigWig bigWig signal mm9 ENCSR000ERS Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 /files/ENCFF001NHS/ 216545365 Michael Snyder, Stanford 5eca0032786fba88dd716e123d3badf5 https://www.encodeproject.org/files/ENCFF001NHR/@@download/ENCFF001NHR.bigWig archived s3://encode-public/2012/08/01/db0aefe5-ada9-41d5-a9cb-25e4e4cb3340/ENCFF001NHR.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NHS bam bam alignments mm9 ENCSR000ERS Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 27 /files/ENCFF001NIM/ 479223243 Michael Snyder, Stanford d97cdbc486e220ba95773984a84dd784 https://www.encodeproject.org/files/ENCFF001NHS/@@download/ENCFF001NHS.bam archived s3://encode-public/2012/08/01/856d97f7-7c92-4a91-b31d-a8af9e0bae56/ENCFF001NHS.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF001NIM fastq fastq reads ENCSR000ERS Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 single-ended 1491776932 Michael Snyder, Stanford f8feb312c4aa83cca0f1f7b3922205f4 SRA:SRR10049450 https://www.encodeproject.org/files/ENCFF001NIM/@@download/ENCFF001NIM.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/6f8fa259-04ec-4ca3-8df0-ff3c5a2bdf36/ENCFF001NIM.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF324OBT bam bam unfiltered alignments mm10 ENCSR000ERS Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF001NIM/, /files/ENCFF018NEO/ 1535757546 ENCODE Processing Pipeline ba8648e0f9fc98872e365cf2b99e83fd https://www.encodeproject.org/files/ENCFF324OBT/@@download/ENCFF324OBT.bam released s3://encode-public/2016/10/26/d4259ce4-299d-4dd7-97de-b8b9847beb26/ENCFF324OBT.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF339ZWC bam bam alignments mm10 ENCSR000ERS Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF001NIM/, /files/ENCFF018NEO/ 438707879 ENCODE Processing Pipeline ee66d63014c0b74a4954e443eceaad85 https://www.encodeproject.org/files/ENCFF339ZWC/@@download/ENCFF339ZWC.bam released s3://encode-public/2016/10/26/64f35f63-2d29-4fd3-aa01-67838d55a8b5/ENCFF339ZWC.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF928CVH bam bam unfiltered alignments mm10 ENCSR000ERS Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NIM/ 1533468275 ENCODE Processing Pipeline 9b24ab85d1b6039da85f01b656198473 https://www.encodeproject.org/files/ENCFF928CVH/@@download/ENCFF928CVH.bam released s3://encode-public/2020/10/12/e2466dfc-ed57-4173-b78a-552d6afcb41b/ENCFF928CVH.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF147LKZ bam bam alignments mm10 ENCSR000ERS Control ChIP-seq /mouse-donors/ENCDO324YEK/ EFO:0005233 CH12.LX cell line Mus musculus DNA 2011-09-19 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NIM/ 466119439 ENCODE Processing Pipeline bc8154a6bdfc83076d9f1065241d35ad https://www.encodeproject.org/files/ENCFF147LKZ/@@download/ENCFF147LKZ.bam released s3://encode-public/2020/10/12/1bd85cab-6186-470a-b398-760dcfa27cd7/ENCFF147LKZ.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF167SGZ fastq fastq reads ENCSR730YCH Control ChIP-seq /worm-donors/ENCDO833KVF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176360/'], '@type': ['Target', 'Item'], 'name': 'hlh-11-celegans', 'label': 'hlh-11', '@id': '/targets/hlh-11-celegans/', 'title': 'hlh-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3af1794b-b345-4d0b-94e9-718bea506fb1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 633563823 Kevin White, UChicago 8190004871ae6427ddfb0d1d079fbf09 https://www.encodeproject.org/files/ENCFF167SGZ/@@download/ENCFF167SGZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/05/30/ccc73fd0-bd4d-4c03-8b8b-3a849a5ccfe5/ENCFF167SGZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF405VFI bam bam alignments ce11 ENCSR730YCH Control ChIP-seq /worm-donors/ENCDO833KVF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176360/'], '@type': ['Target', 'Item'], 'name': 'hlh-11-celegans', 'label': 'hlh-11', '@id': '/targets/hlh-11-celegans/', 'title': 'hlh-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3af1794b-b345-4d0b-94e9-718bea506fb1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF167SGZ/, /files/ENCFF586MOL/ 815502038 Kevin White, UChicago 8b4eb57f26a638c45cfc59f5f3e58fdf https://www.encodeproject.org/files/ENCFF405VFI/@@download/ENCFF405VFI.bam released s3://encode-public/2018/05/31/9124f676-9bb9-4556-a4fa-d51be6258996/ENCFF405VFI.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF807WPY bigWig bigWig read-depth normalized signal ce11 ENCSR730YCH Control ChIP-seq /worm-donors/ENCDO833KVF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176360/'], '@type': ['Target', 'Item'], 'name': 'hlh-11-celegans', 'label': 'hlh-11', '@id': '/targets/hlh-11-celegans/', 'title': 'hlh-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3af1794b-b345-4d0b-94e9-718bea506fb1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF405VFI/ 9925666 Kevin White, UChicago 74d3311b5e03dd3134216f2550046704 https://www.encodeproject.org/files/ENCFF807WPY/@@download/ENCFF807WPY.bigWig released s3://encode-public/2018/05/31/94745810-c68b-4f5e-952c-5d7aafeb1d2d/ENCFF807WPY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF070RIK bigWig bigWig signal of unique reads ce11 ENCSR730YCH Control ChIP-seq /worm-donors/ENCDO833KVF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176360/'], '@type': ['Target', 'Item'], 'name': 'hlh-11-celegans', 'label': 'hlh-11', '@id': '/targets/hlh-11-celegans/', 'title': 'hlh-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3af1794b-b345-4d0b-94e9-718bea506fb1', 'status': 'released'} DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF405VFI/ 9931400 Kevin White, UChicago e28c3d61391e68cf9d432a62f3b45c38 https://www.encodeproject.org/files/ENCFF070RIK/@@download/ENCFF070RIK.bigWig released s3://encode-public/2018/05/31/59a68847-f731-4591-9a4c-485906503f7c/ENCFF070RIK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF001LAG bam bam alignments mm9 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001LAO/ 892921512 Bing Ren, UCSD 9faa26f6d0b45caf7d72eddafd5c276e https://www.encodeproject.org/files/ENCFF001LAG/@@download/ENCFF001LAG.bam archived s3://encode-public/2011/12/23/053da8df-19fa-49f0-9d4a-59b66e06668e/ENCFF001LAG.bam Lab custom mm9 archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF001LAK bigWig bigWig signal mm9 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 /files/ENCFF001LAG/ 79825330 Bing Ren, UCSD 4d42ae86cf55719cc5a271e871cf54c1 https://www.encodeproject.org/files/ENCFF001LAK/@@download/ENCFF001LAK.bigWig archived s3://encode-public/2011/12/23/49cf298f-aba0-4dd9-90b7-1be6a77a3817/ENCFF001LAK.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF001LAO fastq fastq reads ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 single-ended 924394499 Bing Ren, UCSD aaa19c4c2251673d7135a255061be59a https://www.encodeproject.org/files/ENCFF001LAO/@@download/ENCFF001LAO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/d4887775-f1c1-4a9a-aa94-632ff6900da4/ENCFF001LAO.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF376NWD bam bam unfiltered alignments mm10-minimal ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF806TVZ/, /files/ENCFF001LAO/ 942687273 J. Michael Cherry, Stanford ed549583af54e1b253bd2a5ecd21ff56 https://www.encodeproject.org/files/ENCFF376NWD/@@download/ENCFF376NWD.bam archived s3://encode-public/2015/02/10/8358c646-b3a2-42be-9e37-6f661ff75918/ENCFF376NWD.bam ENCODE3 mm10-minimal archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF451TDX bam bam alignments mm10-minimal ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF806TVZ/, /files/ENCFF001LAO/ 205159889 J. Michael Cherry, Stanford 2229c5a6b2eb73ee4c4961dadb0fe236 https://www.encodeproject.org/files/ENCFF451TDX/@@download/ENCFF451TDX.bam archived s3://encode-public/2015/05/24/3203458e-e9f1-4900-ad1b-2875c571b429/ENCFF451TDX.bam ENCODE3 mm10-minimal archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF786ODW fastq fastq reads ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 single-ended 887333452 Bing Ren, UCSD 41a5316474b39afeb79cde365bee4455 https://www.encodeproject.org/files/ENCFF786ODW/@@download/ENCFF786ODW.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2015/06/22/cb6cd9ed-16a2-4497-8299-7c0254954046/ENCFF786ODW.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF379WSY bam bam alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF018NEO/, /files/ENCFF001LAO/ 205123499 ENCODE Processing Pipeline 274fdbf89b652d3da4dc2588d463c84a https://www.encodeproject.org/files/ENCFF379WSY/@@download/ENCFF379WSY.bam released s3://encode-public/2016/04/28/c7b1103d-0f80-4c8f-b9eb-588e0a833647/ENCFF379WSY.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF203NOX bam bam unfiltered alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF018NEO/, /files/ENCFF001LAO/ 943221245 ENCODE Processing Pipeline 2668223ef27909f3ab253006f4c51c96 https://www.encodeproject.org/files/ENCFF203NOX/@@download/ENCFF203NOX.bam released s3://encode-public/2016/07/06/1d210b53-f56f-4e02-a535-3b6377dcfd8b/ENCFF203NOX.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF009XLK bam bam unfiltered alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001LAO/, /files/ENCFF309GLL/ 916735229 ENCODE Processing Pipeline 8985419a4c190a4ed25669c7cc0e3325 https://www.encodeproject.org/files/ENCFF009XLK/@@download/ENCFF009XLK.bam released s3://encode-public/2020/10/12/20d64021-5717-4b93-a47a-48e1b586dcc2/ENCFF009XLK.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF240ENY bam bam unfiltered alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF786ODW/, /files/ENCFF018NEO/ 1009967487 ENCODE Processing Pipeline d5bf67a8b8040951ce094d8d8a1443c6 https://www.encodeproject.org/files/ENCFF240ENY/@@download/ENCFF240ENY.bam released s3://encode-public/2016/12/16/d7004046-8159-4e72-9de1-a7f87914d464/ENCFF240ENY.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF132CII bam bam alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF786ODW/, /files/ENCFF018NEO/ 654557969 ENCODE Processing Pipeline 41dd513fd206b7609371a3cf6e55ac22 https://www.encodeproject.org/files/ENCFF132CII/@@download/ENCFF132CII.bam released s3://encode-public/2016/12/16/de558d9b-96e1-4da9-b1d0-37eb4a9e9f6a/ENCFF132CII.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF099BES bam bam unfiltered alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF786ODW/, /files/ENCFF309GLL/ 973638187 ENCODE Processing Pipeline 6b2889d6a37b6d9d63589fa80915fd9c https://www.encodeproject.org/files/ENCFF099BES/@@download/ENCFF099BES.bam released s3://encode-public/2020/10/12/a50714c1-cecf-426b-96e9-e6a8adff1568/ENCFF099BES.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF710ERW bam bam alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF786ODW/, /files/ENCFF309GLL/ 701719744 ENCODE Processing Pipeline 59ffc7c59da4de3aaa5600a05a6180c2 https://www.encodeproject.org/files/ENCFF710ERW/@@download/ENCFF710ERW.bam released s3://encode-public/2020/10/12/1e667a4c-5f36-4ba7-921f-79f9277523fb/ENCFF710ERW.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF503WQS bam bam alignments mm10 ENCSR000CDB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000955 brain tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001LAO/, /files/ENCFF309GLL/ 218313210 ENCODE Processing Pipeline b6f520d19ec8b801cf77153555e4801d https://www.encodeproject.org/files/ENCFF503WQS/@@download/ENCFF503WQS.bam released s3://encode-public/2020/10/12/00b16931-da25-41f1-af4f-52a622ffc8e6/ENCFF503WQS.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths, inconsistent platforms insufficient read length, poor library complexity, severe bottlenecking, insufficient read depth ENCFF000PUP bam bam alignments hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000PVC/ 1333022461 Richard Myers, HAIB 74444b9647fc7961a4e5823bd458162e https://www.encodeproject.org/files/ENCFF000PUP/@@download/ENCFF000PUP.bam archived s3://encode-public/2012/01/23/bd1aa3aa-f465-42a3-a45f-0d9ba9a5adaa/ENCFF000PUP.bam Lab custom hg19 archived low read depth ENCFF000PUQ bam bam alignments hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000PVZ/ 1366745202 Richard Myers, HAIB e677407da4eb123b77df1613d2b83f80 https://www.encodeproject.org/files/ENCFF000PUQ/@@download/ENCFF000PUQ.bam archived s3://encode-public/2012/01/23/9a4863f2-3418-42a1-9264-94926d8748de/ENCFF000PUQ.bam Lab custom hg19 archived low read depth ENCFF000PUR bigWig bigWig raw signal hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 241811556 Richard Myers, HAIB a5ca362571eea3654f92fa23d353d537 https://www.encodeproject.org/files/ENCFF000PUR/@@download/ENCFF000PUR.bigWig archived s3://encode-public/2012/01/23/c35f2330-64df-4ca8-a2af-b081e94cf8ed/ENCFF000PUR.bigWig Lab custom hg19 archived low read depth ENCFF000PUU bigWig bigWig raw signal hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 96132298 Richard Myers, HAIB 3426f90b01814385ea0acdd1090c29ab https://www.encodeproject.org/files/ENCFF000PUU/@@download/ENCFF000PUU.bigWig archived s3://encode-public/2012/01/23/0fc54c4b-7a79-4e5b-9945-264aabbfb04e/ENCFF000PUU.bigWig Lab custom hg19 archived low read depth ENCFF000PVC fastq fastq reads ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 single-ended 1348471026 Richard Myers, HAIB cf6c7e2dd2780f5c6e22df37c7d69173 https://www.encodeproject.org/files/ENCFF000PVC/@@download/ENCFF000PVC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/6b36100a-55a8-48d3-9c03-553b5d635d39/ENCFF000PVC.fastq.gz low read depth ENCFF000PVZ fastq fastq reads ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 single-ended 1212488971 Richard Myers, HAIB a4c1e7b7ee48fee87ec998d27e07a685 https://www.encodeproject.org/files/ENCFF000PVZ/@@download/ENCFF000PVZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/4048854d-e5f4-4c35-b92e-cf89d17721d0/ENCFF000PVZ.fastq.gz low read depth ENCFF895MWF bam bam alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000PVC/ 1086700362 ENCODE Processing Pipeline 6d57c8e4e9abe21ef4b54a0f1e86db3a https://www.encodeproject.org/files/ENCFF895MWF/@@download/ENCFF895MWF.bam released s3://encode-public/2017/06/16/9ca04dc6-1a64-4b53-8c62-c8aacd76c515/ENCFF895MWF.bam ENCODE3 GRCh38 archived low read depth ENCFF642UHU bam bam unfiltered alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000PVC/ 1451031219 ENCODE Processing Pipeline 119698c2eb807c46b24c04084ee7bf56 https://www.encodeproject.org/files/ENCFF642UHU/@@download/ENCFF642UHU.bam released s3://encode-public/2017/06/16/1f61bd0a-85e3-4627-ac6c-02d92f26b067/ENCFF642UHU.bam ENCODE3 GRCh38 archived low read depth ENCFF414MKM bam bam alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF643CGH/, /files/ENCFF000PVZ/ 718498096 ENCODE Processing Pipeline c8a9bde1d1dd3a969a2a6e6600f68588 https://www.encodeproject.org/files/ENCFF414MKM/@@download/ENCFF414MKM.bam released s3://encode-public/2017/06/16/459cbd99-6891-4b8b-839d-dceda6e0a00b/ENCFF414MKM.bam ENCODE3 GRCh38 archived low read depth ENCFF233USV bam bam unfiltered alignments hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF807MUK/, /files/ENCFF000PVZ/ 1543157368 ENCODE Processing Pipeline 7b7f4e15aca881689ba946e13447d637 https://www.encodeproject.org/files/ENCFF233USV/@@download/ENCFF233USV.bam released s3://encode-public/2017/06/16/c049dca9-5bae-4208-b991-422b300df710/ENCFF233USV.bam ENCODE3 hg19 archived low read depth ENCFF407WPP bam bam alignments hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF807MUK/, /files/ENCFF000PVZ/ 717442555 ENCODE Processing Pipeline 438faa735f699f19dd74270d63a1b19b https://www.encodeproject.org/files/ENCFF407WPP/@@download/ENCFF407WPP.bam released s3://encode-public/2017/06/16/f37d01e5-8da2-489b-8926-315cb9055ba4/ENCFF407WPP.bam ENCODE3 hg19 archived low read depth ENCFF880DIZ bam bam alignments hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000PVC/ 1086687029 ENCODE Processing Pipeline 965e581a6c53355ed79470770f756fee https://www.encodeproject.org/files/ENCFF880DIZ/@@download/ENCFF880DIZ.bam released s3://encode-public/2017/06/16/400128bb-4f5f-470b-99aa-f5235194ddd3/ENCFF880DIZ.bam ENCODE3 hg19 archived low read depth ENCFF494VIW bam bam unfiltered alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF643CGH/, /files/ENCFF000PVZ/ 1553492782 ENCODE Processing Pipeline 01d0bfdf99703857a72e25f8a321e5a4 https://www.encodeproject.org/files/ENCFF494VIW/@@download/ENCFF494VIW.bam released s3://encode-public/2017/06/16/f2b2027b-42da-4acc-8b92-ff50ef8c9076/ENCFF494VIW.bam ENCODE3 GRCh38 archived low read depth ENCFF291NWO bam bam unfiltered alignments hg19 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000PVC/ 1446506346 ENCODE Processing Pipeline 3842e37c66e19bdf72ff3e506af69520 https://www.encodeproject.org/files/ENCFF291NWO/@@download/ENCFF291NWO.bam released s3://encode-public/2017/06/16/79556e8f-c5c4-4f52-ac15-22d23853198c/ENCFF291NWO.bam ENCODE3 hg19 archived low read depth ENCFF814DRW bam bam unfiltered alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000PVC/ 1454623456 ENCODE Processing Pipeline 8be33c25b13b0ee31ab1cefe3efe018f https://www.encodeproject.org/files/ENCFF814DRW/@@download/ENCFF814DRW.bam released s3://encode-public/2020/10/27/a5629af0-5549-42c8-a305-2a8dcbdffd74/ENCFF814DRW.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF373DEP bam bam unfiltered alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF110MCL/, /files/ENCFF000PVZ/ 1564661607 ENCODE Processing Pipeline 9a5785c84891b8de5eef16088f4dd707 https://www.encodeproject.org/files/ENCFF373DEP/@@download/ENCFF373DEP.bam released s3://encode-public/2020/10/27/3306b2eb-8fd7-41aa-ab38-e69b47f427d9/ENCFF373DEP.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF212KZL bam bam alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000PVC/ 1135458837 ENCODE Processing Pipeline 186fc65ed186b6fc1fa35488c5297ebe https://www.encodeproject.org/files/ENCFF212KZL/@@download/ENCFF212KZL.bam released s3://encode-public/2020/10/27/cbf6400f-b7b7-4b5c-9286-bec0f5f660ca/ENCFF212KZL.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF672DXH bam bam alignments GRCh38 ENCSR000BVU Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF110MCL/, /files/ENCFF000PVZ/ 770984224 ENCODE Processing Pipeline 0bcffc54d58e25b41a87093454f353b2 https://www.encodeproject.org/files/ENCFF672DXH/@@download/ENCFF672DXH.bam released s3://encode-public/2020/10/27/7f056251-cecb-4162-a416-eb2dd684f045/ENCFF672DXH.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF001KEN bam bam alignments mm9 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF001KEU/ 550253819 Bing Ren, UCSD 9e60b46ed347a05e37b771106cf9f774 https://www.encodeproject.org/files/ENCFF001KEN/@@download/ENCFF001KEN.bam archived s3://encode-public/2011/12/23/b200b3fa-1f35-4bb7-ac41-00029cc93be3/ENCFF001KEN.bam Lab custom mm9 archived low read depth, low read length ENCFF001KEO bam bam alignments mm9 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KEX/ 698241387 Bing Ren, UCSD d4f1095d804783460877fa313e2580f4 https://www.encodeproject.org/files/ENCFF001KEO/@@download/ENCFF001KEO.bam archived s3://encode-public/2011/12/23/7f17fb86-9feb-4488-96ee-4c689273d033/ENCFF001KEO.bam Lab custom mm9 archived low read depth, low read length ENCFF001KEP bigWig bigWig signal mm9 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1, 2 1_1, 2_1 /files/ENCFF001KEO/, /files/ENCFF001KEN/ 63289436 Bing Ren, UCSD aa7534c1b13652d484647b38a8040877 https://www.encodeproject.org/files/ENCFF001KEP/@@download/ENCFF001KEP.bigWig archived s3://encode-public/2011/12/23/30b5ca1b-e638-4ecb-ad60-f75012279091/ENCFF001KEP.bigWig Lab custom mm9 archived low read depth, low read length ENCFF001KEU fastq fastq reads ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 single-ended 563187895 Bing Ren, UCSD ac2d7697c98b112b2ee81d2c6ffa0f0d https://www.encodeproject.org/files/ENCFF001KEU/@@download/ENCFF001KEU.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/34c3a5bb-38e9-426c-b723-5958f4d610bb/ENCFF001KEU.fastq.gz low read depth, low read length ENCFF001KEX fastq fastq reads ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 single-ended 758014146 Bing Ren, UCSD faebd15a459e28110035e9c09a097fc8 https://www.encodeproject.org/files/ENCFF001KEX/@@download/ENCFF001KEX.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/60028528-a78c-49af-8aab-13910237a8f2/ENCFF001KEX.fastq.gz low read depth, low read length ENCFF766YXO bam bam unfiltered alignments mm10-minimal ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001KEU/ 670549884 ENCODE Processing Pipeline e40f985f635ee37d674f065c1e8fae66 https://www.encodeproject.org/files/ENCFF766YXO/@@download/ENCFF766YXO.bam archived s3://encode-public/2015/02/04/bee86aa8-681e-48e4-8b26-0716a9cdc734/ENCFF766YXO.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF890WBX bam bam unfiltered alignments mm10-minimal ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KEX/, /files/ENCFF806TVZ/ 888164348 ENCODE Processing Pipeline ab4eb43d968816e4bcd58f5bfac98a8a https://www.encodeproject.org/files/ENCFF890WBX/@@download/ENCFF890WBX.bam archived s3://encode-public/2015/02/04/9b64b17b-010a-46fd-80a9-3078b5e8caab/ENCFF890WBX.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF439WCI bam bam alignments mm10 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KEX/, /files/ENCFF018NEO/ 585818092 ENCODE Processing Pipeline dc7f0fd0395bb74c8d10511940588fb4 https://www.encodeproject.org/files/ENCFF439WCI/@@download/ENCFF439WCI.bam released s3://encode-public/2016/04/28/816aab59-0db3-429a-bd7d-404e475e4fc2/ENCFF439WCI.bam ENCODE3 mm10 archived low read depth, low read length ENCFF683TKC bam bam alignments mm10 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KEU/ 468270352 ENCODE Processing Pipeline 033f876d8caf2c4be6ea71c52402b271 https://www.encodeproject.org/files/ENCFF683TKC/@@download/ENCFF683TKC.bam released s3://encode-public/2016/04/28/e21f1d3d-5942-4d1a-8b11-62df7bb2bb7f/ENCFF683TKC.bam ENCODE3 mm10 archived low read depth, low read length ENCFF655VTV bam bam unfiltered alignments mm10 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KEU/ 670765884 ENCODE Processing Pipeline a42575377f42ff4154b585be632acafd https://www.encodeproject.org/files/ENCFF655VTV/@@download/ENCFF655VTV.bam released s3://encode-public/2016/05/24/c61ee1fb-eddf-46a5-acdb-138760079872/ENCFF655VTV.bam ENCODE3 mm10 archived low read depth, low read length ENCFF515HYK bam bam unfiltered alignments mm10 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KEX/, /files/ENCFF018NEO/ 888793133 ENCODE Processing Pipeline 120289b2408d641f476ed0b99c0b6291 https://www.encodeproject.org/files/ENCFF515HYK/@@download/ENCFF515HYK.bam released s3://encode-public/2016/05/24/4a897443-3f50-4bdc-acd0-3287e2f9a9b1/ENCFF515HYK.bam ENCODE3 mm10 archived low read depth, low read length ENCFF749CPB bam bam alignments mm10-minimal ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001KEU/ 468474701 ENCODE Processing Pipeline a72cacb538cb79b573f177b19a382eb4 https://www.encodeproject.org/files/ENCFF749CPB/@@download/ENCFF749CPB.bam archived s3://encode-public/2016/03/02/2054c6e5-65c3-466e-9298-f6667fbcfea0/ENCFF749CPB.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF343KWM bam bam alignments mm10-minimal ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KEX/, /files/ENCFF806TVZ/ 586089101 ENCODE Processing Pipeline 5540b240dc0e830a58a6ec44d47d941f https://www.encodeproject.org/files/ENCFF343KWM/@@download/ENCFF343KWM.bam archived s3://encode-public/2016/03/02/ab29b36b-185a-43ec-b183-19c0cd3ef89f/ENCFF343KWM.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF655SLY bam bam unfiltered alignments mm10 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KEU/ 660882340 ENCODE Processing Pipeline 53e9f78086d2d5773358ea5288bf35ab https://www.encodeproject.org/files/ENCFF655SLY/@@download/ENCFF655SLY.bam released s3://encode-public/2020/10/12/99a45b73-fcdb-4478-8070-533964c03d8d/ENCFF655SLY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF197KAT bam bam unfiltered alignments mm10 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 2 2_1 36 /files/ENCFF001KEX/, /files/ENCFF309GLL/ 874095503 ENCODE Processing Pipeline 158d0a748a1882c980b2f319ffa2b982 https://www.encodeproject.org/files/ENCFF197KAT/@@download/ENCFF197KAT.bam released s3://encode-public/2020/10/12/83eadf2b-13e6-4c6e-8b08-3ce20824e7b9/ENCFF197KAT.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF296TCP bam bam alignments mm10 ENCSR000CBH Control ChIP-seq /mouse-donors/ENCDO081AAA/ EFO:0005483 ES-Bruce4 cell line Mus musculus DNA 2011-06-24 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KEU/ 506076721 ENCODE Processing Pipeline 60ab23c15038cde1e71cd916a18bb285 https://www.encodeproject.org/files/ENCFF296TCP/@@download/ENCFF296TCP.bam released s3://encode-public/2020/10/12/20cf8425-915d-4d20-9826-eb7b2c027da0/ENCFF296TCP.bam ENCODE4 v1.5.1 mm10 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s3://encode-public/2021/04/30/9ae2ef86-26c0-400a-98a6-f23544a9cdd3/ENCFF087VHX.fastq.gz ENCFF667OVX fastq fastq reads ENCSR891ZHA Control ChIP-seq /human-donors/ENCDO033BMB/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 322682552 Bradley Bernstein, Broad b9f57bd3f348f39efb31217afea84b9d SRA:SRR16814646 https://www.encodeproject.org/files/ENCFF667OVX/@@download/ENCFF667OVX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/988b5dde-25d1-44bc-9d87-c60f82d00b31/ENCFF667OVX.fastq.gz ENCFF552KYU fastq fastq reads ENCSR891ZHA Control ChIP-seq /human-donors/ENCDO033BMB/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1 76 single-ended 320241551 Bradley Bernstein, Broad d2f8397d627c1e2a9e931d16821b9e59 SRA:SRR16814647 https://www.encodeproject.org/files/ENCFF552KYU/@@download/ENCFF552KYU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/7c60a041-e73a-4414-bc07-9fb66ac0fa9d/ENCFF552KYU.fastq.gz ENCFF610SND fastq fastq reads ENCSR891ZHA Control ChIP-seq /human-donors/ENCDO033BMB/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_2 76 single-ended 745751370 Bradley Bernstein, Broad b699f20c0dabd8cdee96078342cd41ea SRA:SRR16814651 https://www.encodeproject.org/files/ENCFF610SND/@@download/ENCFF610SND.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/adabc3a2-8bbc-4aa3-ba38-4b924879283a/ENCFF610SND.fastq.gz ENCFF551OQY bam bam unfiltered alignments GRCh38 ENCSR891ZHA Control ChIP-seq /human-donors/ENCDO033BMB/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF661MJJ/, /files/ENCFF610SND/, /files/ENCFF552KYU/, /files/ENCFF667OVX/, /files/ENCFF363SFT/, /files/ENCFF087VHX/, /files/ENCFF110MCL/, /files/ENCFF715FDN/, /files/ENCFF839SXT/ 4121101833 ENCODE Processing Pipeline d6be7543067ba92687e369db978a491a https://www.encodeproject.org/files/ENCFF551OQY/@@download/ENCFF551OQY.bam released s3://encode-public/2021/06/18/83d8ceae-39be-4892-aff7-5a038087e53c/ENCFF551OQY.bam ENCODE4 v1.8.0 GRCh38 released ENCFF150VTC bam bam alignments GRCh38 ENCSR891ZHA Control ChIP-seq /human-donors/ENCDO033BMB/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF661MJJ/, /files/ENCFF610SND/, /files/ENCFF552KYU/, /files/ENCFF667OVX/, /files/ENCFF363SFT/, /files/ENCFF087VHX/, /files/ENCFF110MCL/, /files/ENCFF715FDN/, /files/ENCFF839SXT/ 3455969529 ENCODE Processing Pipeline ebf4e6201d228560f948f3716c561e76 https://www.encodeproject.org/files/ENCFF150VTC/@@download/ENCFF150VTC.bam released s3://encode-public/2021/06/18/dd2ea316-cb2d-49af-97b2-6ac33191fd21/ENCFF150VTC.bam ENCODE4 v1.8.0 GRCh38 released ENCFF000XSD bam bam alignments hg19 ENCSR000EDR Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 27 749300372 Michael Snyder, Stanford 4fcc79eb094d77a7bb2f15c8e0c1b369 https://www.encodeproject.org/files/ENCFF000XSD/@@download/ENCFF000XSD.bam archived s3://encode-public/2012/07/01/eb933442-ae87-4253-9278-3b2f5a563088/ENCFF000XSD.bam Lab custom hg19 archived low read depth, low read length ENCFF000XSE fastq fastq reads ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 single-ended 734068986 Michael Snyder, Stanford 9b68cbd773ccbaf55c7433431a7fbc6d https://www.encodeproject.org/files/ENCFF000XSE/@@download/ENCFF000XSE.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/7ba6b5ad-8640-4f81-958e-1cecd6e8c7ed/ENCFF000XSE.fastq.gz low read depth, low read length ENCFF000XSI bigWig bigWig signal hg19 ENCSR000EDR Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 320694072 Michael Snyder, Stanford 24402f787a4ecb8f04635797c006fc96 https://www.encodeproject.org/files/ENCFF000XSI/@@download/ENCFF000XSI.bigWig archived s3://encode-public/2012/07/01/e74d2bba-4e1e-4803-b4f8-ab775f69a5d1/ENCFF000XSI.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000XSG fastq fastq reads ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 single-ended 635287680 Michael Snyder, Stanford e940e196444c34308c33c699f8844a02 https://www.encodeproject.org/files/ENCFF000XSG/@@download/ENCFF000XSG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/57f098b8-3e7a-4d97-8eb5-491df50c284e/ENCFF000XSG.fastq.gz low read depth, low read length ENCFF659OAL bam bam unfiltered alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF000XSG/, /files/ENCFF643CGH/ 763440279 ENCODE Processing Pipeline f5394fb4e2172c2707a711b3352cf6ad https://www.encodeproject.org/files/ENCFF659OAL/@@download/ENCFF659OAL.bam released s3://encode-public/2016/10/26/12e82745-e8db-40dc-a0bf-9f092c3f153c/ENCFF659OAL.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF604FHH bam bam unfiltered alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000XSE/ 869328314 ENCODE Processing Pipeline 2af6cb7ffcbe3ae13fbe251e7d92eb5b https://www.encodeproject.org/files/ENCFF604FHH/@@download/ENCFF604FHH.bam released s3://encode-public/2016/10/26/6713b842-0701-4525-9365-4a641e17c2cc/ENCFF604FHH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF125NKU bam bam alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF000XSG/, /files/ENCFF643CGH/ 535310242 ENCODE Processing Pipeline b419a972bdfdbb6ea6943a9d697ff816 https://www.encodeproject.org/files/ENCFF125NKU/@@download/ENCFF125NKU.bam released s3://encode-public/2016/10/26/a15ca4e1-d068-4fc6-94f5-29998bd5132d/ENCFF125NKU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF702VTX bam bam alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000XSE/ 606074573 ENCODE Processing Pipeline e880627fb7e05cfb539419930f4a2746 https://www.encodeproject.org/files/ENCFF702VTX/@@download/ENCFF702VTX.bam released s3://encode-public/2016/10/26/3e23c571-a021-4113-aaa1-a89943165bc0/ENCFF702VTX.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF346BPV bam bam unfiltered alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF000XSE/, /files/ENCFF110MCL/ 845930246 ENCODE Processing Pipeline 48f590fe1dbefed9698af2336e24b4f4 https://www.encodeproject.org/files/ENCFF346BPV/@@download/ENCFF346BPV.bam released s3://encode-public/2020/10/27/917940dc-a80b-4fbc-9d61-97a77feede05/ENCFF346BPV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF010HGI bam bam alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF000XSG/, /files/ENCFF110MCL/ 589132855 ENCODE Processing Pipeline db87094acea155e4a14c176fdb2f4627 https://www.encodeproject.org/files/ENCFF010HGI/@@download/ENCFF010HGI.bam released s3://encode-public/2020/10/27/796f5d8e-6b96-41a9-a1c2-432033d7aa70/ENCFF010HGI.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF375BIZ bam bam unfiltered alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 36 /files/ENCFF000XSG/, /files/ENCFF110MCL/ 742233421 ENCODE Processing Pipeline 51583ca9ec32086f25120e0a512b3065 https://www.encodeproject.org/files/ENCFF375BIZ/@@download/ENCFF375BIZ.bam released s3://encode-public/2020/10/27/8cf8433a-4438-4cb9-b4b5-a1cc808c37d0/ENCFF375BIZ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF160OKB bam bam alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 36 /files/ENCFF000XSE/, /files/ENCFF110MCL/ 667893287 ENCODE Processing Pipeline e2bf9cd6f8bc0974600b1b2d5e5d0bf6 https://www.encodeproject.org/files/ENCFF160OKB/@@download/ENCFF160OKB.bam released s3://encode-public/2020/10/27/e34229e5-318d-4b84-82d9-1b8cb4010d4b/ENCFF160OKB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF298LXC bam bam unfiltered alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 32 /files/ENCFF110MCL/, /files/ENCFF000XSG/ 695285606 ENCODE Processing Pipeline be25ac704006db7cb331dd7951348538 https://www.encodeproject.org/files/ENCFF298LXC/@@download/ENCFF298LXC.bam released s3://encode-public/2021/01/06/51ba17ef-eb24-4937-8a8a-aa424524e5df/ENCFF298LXC.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF307UHU bam bam unfiltered alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 32 /files/ENCFF000XSE/, /files/ENCFF110MCL/ 790821515 ENCODE Processing Pipeline 40b3d9eeb0811a4bb1ef49c86225a8c8 https://www.encodeproject.org/files/ENCFF307UHU/@@download/ENCFF307UHU.bam released s3://encode-public/2021/01/06/80a0fc2e-eacc-4931-941d-9946f659c1a4/ENCFF307UHU.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF454PQR bam bam alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 1 1_1 32 /files/ENCFF000XSE/, /files/ENCFF110MCL/ 588238636 ENCODE Processing Pipeline 8305378c6ea11d7ab15de48db249dd68 https://www.encodeproject.org/files/ENCFF454PQR/@@download/ENCFF454PQR.bam released s3://encode-public/2021/01/06/298474f5-4861-4ed4-8fe1-17475224bc11/ENCFF454PQR.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF862DIU bam bam alignments GRCh38 ENCSR000EDR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2012-08-20 ENCODE see document 2 2_1 32 /files/ENCFF110MCL/, /files/ENCFF000XSG/ 517719733 ENCODE Processing Pipeline 5d3e7d082c8cb71f40c01717b453c635 https://www.encodeproject.org/files/ENCFF862DIU/@@download/ENCFF862DIU.bam released s3://encode-public/2021/01/06/c92d8148-1bba-4bf1-a04c-a7734bb599d7/ENCFF862DIU.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF000ODM bam bam alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF000ODZ/ 1492433904 Richard Myers, HAIB 84ab501a12f772201804a7d7b84dea0c https://www.encodeproject.org/files/ENCFF000ODM/@@download/ENCFF000ODM.bam archived s3://encode-public/2012/01/23/20fd6d1d-d840-4783-9b89-cc70a789a368/ENCFF000ODM.bam Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ODN bam bam alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 /files/ENCFF000ODV/ 2543184856 Richard Myers, HAIB 26278e4fc2c151756d327e93e2d9733a https://www.encodeproject.org/files/ENCFF000ODN/@@download/ENCFF000ODN.bam archived s3://encode-public/2012/01/23/75418d72-e98e-425e-a2a2-2bd418563d03/ENCFF000ODN.bam Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ODQ bigWig bigWig raw signal hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 372676121 Richard Myers, HAIB e0015a88c476d0b81d451259d601f5e4 https://www.encodeproject.org/files/ENCFF000ODQ/@@download/ENCFF000ODQ.bigWig archived s3://encode-public/2012/01/23/eff2b77d-14d8-440b-9329-304cb3d3e7d3/ENCFF000ODQ.bigWig Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ODR bam bam alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF000OEB/ 1767732705 Richard Myers, HAIB 2b6641cfa309fe20e1b89c596a6ff746 https://www.encodeproject.org/files/ENCFF000ODR/@@download/ENCFF000ODR.bam archived s3://encode-public/2012/01/23/8ab08795-810b-456f-a99a-926018e540f9/ENCFF000ODR.bam Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ODS bigWig bigWig raw signal hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 141295896 Richard Myers, HAIB d6bffbf9981723a929852397f1b601eb https://www.encodeproject.org/files/ENCFF000ODS/@@download/ENCFF000ODS.bigWig archived s3://encode-public/2012/01/23/75c32381-557c-491f-bd5d-b6ce73223029/ENCFF000ODS.bigWig Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ODT bigWig bigWig raw signal hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 232710100 Richard Myers, HAIB c6a739e31ae24579e7cc193219cf18ed https://www.encodeproject.org/files/ENCFF000ODT/@@download/ENCFF000ODT.bigWig archived s3://encode-public/2012/01/23/dd8c7d7f-df7f-44e2-a44a-50492ce05567/ENCFF000ODT.bigWig Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ODV fastq fastq reads ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 single-ended 2428702665 Richard Myers, HAIB b3f1146b08b6ee96248dd3dd542efa3c SRA:SRR5331560 https://www.encodeproject.org/files/ENCFF000ODV/@@download/ENCFF000ODV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/dd6e9388-f8f7-489f-93dd-93f2d72a16ae/ENCFF000ODV.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ODZ fastq fastq reads ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 single-ended 1512041606 Richard Myers, HAIB cf5ca18c943aeb8b8b3764d6f756fd4e SRA:SRR5331561 https://www.encodeproject.org/files/ENCFF000ODZ/@@download/ENCFF000ODZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/7b91da84-5774-4bc1-a2a6-b15b483abefa/ENCFF000ODZ.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000OEB fastq fastq reads ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 single-ended 1871749402 Richard Myers, HAIB caaf89c0bbec00e8c60db05db5cdb895 SRA:SRR5331559 https://www.encodeproject.org/files/ENCFF000OEB/@@download/ENCFF000OEB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/0dc60f14-a504-42bb-8104-d092cbc8ca76/ENCFF000OEB.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF761FPR bam bam unfiltered alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 /files/ENCFF000ODV/, /files/ENCFF807MUK/ 2680206891 ENCODE Processing Pipeline 81317de5b7870d3604b6608b59d62fe8 https://www.encodeproject.org/files/ENCFF761FPR/@@download/ENCFF761FPR.bam released s3://encode-public/2016/09/01/fb139356-e11e-4aec-b735-5eb8a4f9fb2a/ENCFF761FPR.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF508HCX bam bam alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 /files/ENCFF000ODV/, /files/ENCFF807MUK/ 1721220127 ENCODE Processing Pipeline 6132393d429d687e95a76abbc7520bd7 https://www.encodeproject.org/files/ENCFF508HCX/@@download/ENCFF508HCX.bam released s3://encode-public/2016/09/01/91f7856f-7b60-4810-b8b6-b26832a3e5c0/ENCFF508HCX.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF059GST bam bam unfiltered alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF807MUK/, /files/ENCFF000OEB/ 1888690010 ENCODE Processing Pipeline 040c90ea021b06d7f66e531f166761b7 https://www.encodeproject.org/files/ENCFF059GST/@@download/ENCFF059GST.bam released s3://encode-public/2016/09/01/a879501d-5e5a-49e7-9186-904a42914eff/ENCFF059GST.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF777FIV bam bam alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF807MUK/, /files/ENCFF000OEB/ 1306065529 ENCODE Processing Pipeline f96c4e74b8e5df81fe415050c22e8f35 https://www.encodeproject.org/files/ENCFF777FIV/@@download/ENCFF777FIV.bam released s3://encode-public/2016/09/01/8e8fe0d1-91bb-4b5e-aad7-cfeed62a0a9b/ENCFF777FIV.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF466NJR bam bam unfiltered alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF807MUK/, /files/ENCFF000ODZ/ 1590945291 ENCODE Processing Pipeline de8093c510d7fc65b370df5a1ade3ace https://www.encodeproject.org/files/ENCFF466NJR/@@download/ENCFF466NJR.bam released s3://encode-public/2016/09/01/2a399a92-e851-4808-a085-38952b009b66/ENCFF466NJR.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF513ZBH bam bam alignments hg19 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF807MUK/, /files/ENCFF000ODZ/ 1046037561 ENCODE Processing Pipeline e2c1e190e4f3d1012efa075bb4afae41 https://www.encodeproject.org/files/ENCFF513ZBH/@@download/ENCFF513ZBH.bam released s3://encode-public/2016/09/01/71d32c09-1122-4a2a-952b-d80fcb4be327/ENCFF513ZBH.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF398XCF bam bam unfiltered alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF643CGH/, /files/ENCFF000OEB/ 1861479278 ENCODE Processing Pipeline e4ff888b06ba803b387202479a9f2154 https://www.encodeproject.org/files/ENCFF398XCF/@@download/ENCFF398XCF.bam released s3://encode-public/2016/10/29/4693eb2d-1d02-4834-837b-a4bf8d9c3a36/ENCFF398XCF.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF927AOE bam bam unfiltered alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF643CGH/, /files/ENCFF000ODZ/ 1570753609 ENCODE Processing Pipeline e541454124597323f11e64f481990b48 https://www.encodeproject.org/files/ENCFF927AOE/@@download/ENCFF927AOE.bam released s3://encode-public/2016/10/29/b7e3cc2e-31ee-4ef3-ad18-0a350a2dda5b/ENCFF927AOE.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF877PBK bam bam unfiltered alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 /files/ENCFF000ODV/, /files/ENCFF643CGH/ 2686936240 ENCODE Processing Pipeline 5b5751478001209383ddfaba5954293c https://www.encodeproject.org/files/ENCFF877PBK/@@download/ENCFF877PBK.bam released s3://encode-public/2016/10/29/b58a6057-a53c-48f2-a863-4b3f2d379d91/ENCFF877PBK.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF754WTG bam bam alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF643CGH/, /files/ENCFF000OEB/ 1312949198 ENCODE Processing Pipeline 15527dd6157103b7405931893af68964 https://www.encodeproject.org/files/ENCFF754WTG/@@download/ENCFF754WTG.bam released s3://encode-public/2016/10/29/10663ae6-f697-4bed-afff-c1e9071d4246/ENCFF754WTG.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF966AVZ bam bam alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF643CGH/, /files/ENCFF000ODZ/ 1053879373 ENCODE Processing Pipeline 4f64250b75a0869434f248fcedd996a2 https://www.encodeproject.org/files/ENCFF966AVZ/@@download/ENCFF966AVZ.bam released s3://encode-public/2016/10/29/05ef5ddd-d914-445a-879d-5def24067d64/ENCFF966AVZ.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF537DAJ bam bam alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 /files/ENCFF000ODV/, /files/ENCFF643CGH/ 1726061969 ENCODE Processing Pipeline cc9e1b0f6e133804198e1f02f96fd64a https://www.encodeproject.org/files/ENCFF537DAJ/@@download/ENCFF537DAJ.bam released s3://encode-public/2016/10/29/8d9e9641-7f3b-450a-8898-b18f5b5981e7/ENCFF537DAJ.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF865XYF bam bam unfiltered alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000ODZ/ 1289952862 ENCODE Processing Pipeline ba1cbabaa7a2cda4629e8b60f5a378cb https://www.encodeproject.org/files/ENCFF865XYF/@@download/ENCFF865XYF.bam released s3://encode-public/2020/10/27/12d6e4fa-a2e2-4796-8aa2-b5e868f18442/ENCFF865XYF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF339NUH bam bam alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 /files/ENCFF000ODV/, /files/ENCFF110MCL/ 1855613281 ENCODE Processing Pipeline 884676cd66d32f2519d40ece6774753c https://www.encodeproject.org/files/ENCFF339NUH/@@download/ENCFF339NUH.bam released s3://encode-public/2020/10/27/606b842f-348f-4f76-a6f5-e37b552b9882/ENCFF339NUH.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF691UEA bam bam alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF000ODZ/ 903931704 ENCODE Processing Pipeline 1a2858bb659a48ed3e0fba04faffce8b https://www.encodeproject.org/files/ENCFF691UEA/@@download/ENCFF691UEA.bam released s3://encode-public/2020/10/27/c7990615-e194-4b96-9e8a-361ac3faaa6c/ENCFF691UEA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF731RXW bam bam unfiltered alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 36 /files/ENCFF000ODV/, /files/ENCFF110MCL/ 2609681481 ENCODE Processing Pipeline 00a7764cde8d6832745dc70c2dd19aed https://www.encodeproject.org/files/ENCFF731RXW/@@download/ENCFF731RXW.bam released s3://encode-public/2020/10/27/dcbac75e-c6e4-47f2-b600-86113bfc6bfa/ENCFF731RXW.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF870TQH bam bam unfiltered alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000OEB/ 1530999075 ENCODE Processing Pipeline 84e7d28e2587e439eda713889e4f68d7 https://www.encodeproject.org/files/ENCFF870TQH/@@download/ENCFF870TQH.bam released s3://encode-public/2020/10/27/876afbd0-5386-43c0-8f4d-9afe563c9829/ENCFF870TQH.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF305BPN bam bam alignments GRCh38 ENCSR000BVP Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000OEB/ 1147173893 ENCODE Processing Pipeline 4fa2819b4d10da07453690140bb8a8ff https://www.encodeproject.org/files/ENCFF305BPN/@@download/ENCFF305BPN.bam released s3://encode-public/2020/10/27/06460679-d8d5-40d0-bb23-a03f3a0f401b/ENCFF305BPN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000ROW bam bam alignments hg19 ENCSR000DKW Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 33 622126705 Vishwanath Iyer, UTA fc01a486efc03b42f259299c64210069 https://www.encodeproject.org/files/ENCFF000ROW/@@download/ENCFF000ROW.bam archived s3://encode-public/2012/07/26/c3dcf416-764b-4676-afa3-00ad7a363c14/ENCFF000ROW.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000ROY bigWig bigWig signal hg19 ENCSR000DKW Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 4581698103 Vishwanath Iyer, UTA c8ac97d5267c4a404cc519c3057e5751 https://www.encodeproject.org/files/ENCFF000ROY/@@download/ENCFF000ROY.bigWig archived s3://encode-public/2012/07/26/37f6132a-bd09-4979-99a1-c1b25a802aab/ENCFF000ROY.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000RPB fastq fastq reads ENCSR000DKW Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 33 single-ended 563486547 Vishwanath Iyer, UTA b7b552c10494212ce4f100d1b4bf75d5 https://www.encodeproject.org/files/ENCFF000RPB/@@download/ENCFF000RPB.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/07/26/0f633304-f534-4cc9-b90d-de1653f3675c/ENCFF000RPB.fastq.gz low read depth insufficient read length ENCFF798AWR bam bam unfiltered alignments GRCh38 ENCSR000DKW Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 33 /files/ENCFF643CGH/, /files/ENCFF000RPB/ 769519421 ENCODE Processing Pipeline f14c8a90f7ae2d779b878317d62fa50d https://www.encodeproject.org/files/ENCFF798AWR/@@download/ENCFF798AWR.bam released s3://encode-public/2016/10/26/bc3d09c1-f0cf-428a-9885-17e243965ae4/ENCFF798AWR.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF077ATA bam bam alignments GRCh38 ENCSR000DKW Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 33 /files/ENCFF643CGH/, /files/ENCFF000RPB/ 501888685 ENCODE Processing Pipeline c7b8dfd72e30a4a93b20555a99b8a414 https://www.encodeproject.org/files/ENCFF077ATA/@@download/ENCFF077ATA.bam released s3://encode-public/2016/10/26/2ba06dc3-5d75-482c-9399-c0e744d99dfc/ENCFF077ATA.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF576VUV bam bam unfiltered alignments GRCh38 ENCSR000DKW Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 33 /files/ENCFF000RPB/, /files/ENCFF110MCL/ 747251186 ENCODE Processing Pipeline 800e6d4b310f6ffeca2682ed0a3647ef https://www.encodeproject.org/files/ENCFF576VUV/@@download/ENCFF576VUV.bam released s3://encode-public/2020/09/03/ea747367-db1a-49ad-b802-0b59d275ebc7/ENCFF576VUV.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF158NCR bam bam alignments GRCh38 ENCSR000DKW Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 33 /files/ENCFF000RPB/, /files/ENCFF110MCL/ 552765435 ENCODE Processing Pipeline 8e245d50096b7751d435f89609a13241 https://www.encodeproject.org/files/ENCFF158NCR/@@download/ENCFF158NCR.bam released s3://encode-public/2020/09/03/11495cfb-4a7a-4583-8225-c21c71709da8/ENCFF158NCR.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF000SDE bam bam alignments hg19 ENCSR000DNH Control ChIP-seq EFO:0005909 HGPS cell cell line Homo sapiens DNA 2011-03-17 ENCODE see document 36 807171279 Vishwanath Iyer, UTA 1a759e20bda9d3191d38fded13bf9c59 https://www.encodeproject.org/files/ENCFF000SDE/@@download/ENCFF000SDE.bam archived s3://encode-public/2012/07/26/af83ab15-d471-4eff-a0d1-938b0225fb6a/ENCFF000SDE.bam Lab custom hg19 released ENCFF000SDF bigWig bigWig signal hg19 ENCSR000DNH Control ChIP-seq EFO:0005909 HGPS cell cell line Homo sapiens DNA 2011-03-17 ENCODE see document 4707558825 Vishwanath Iyer, UTA 8bd8a3811ae589a90b1aca3faa28085b https://www.encodeproject.org/files/ENCFF000SDF/@@download/ENCFF000SDF.bigWig archived s3://encode-public/2012/07/26/6d3586e9-5756-4adb-be71-e1b29615ae10/ENCFF000SDF.bigWig Lab custom hg19 released ENCFF001HOW bam bam alignments hg19 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HPI/ 665511319 John Stamatoyannopoulos, UW c65e659e364ddeddd821a73d643c87ab https://www.encodeproject.org/files/ENCFF001HOW/@@download/ENCFF001HOW.bam archived s3://encode-public/2011/06/25/fcf37477-cb21-4bbf-92b3-4f4734e78d7d/ENCFF001HOW.bam Lab custom hg19 archived low read depth, low read length ENCFF001HOX bigWig bigWig raw signal hg19 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HOW/ 153415508 John Stamatoyannopoulos, UW 7b89284039957a70b3ed0f4bc3f69358 https://www.encodeproject.org/files/ENCFF001HOX/@@download/ENCFF001HOX.bigWig archived s3://encode-public/2011/06/25/aeb92232-68d5-4fac-9045-38e452cfa190/ENCFF001HOX.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HPI fastq fastq reads ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 708872764 John Stamatoyannopoulos, UW e5f46979a738d0a959e4fa545eb80c95 https://www.encodeproject.org/files/ENCFF001HPI/@@download/ENCFF001HPI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/ce3e096b-d1c6-466a-92ac-342edd59d646/ENCFF001HPI.fastq.gz low read depth, low read length ENCFF151YAO bam bam unfiltered alignments GRCh38 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HPI/ 872742746 ENCODE Processing Pipeline bc69a45b098ccce0f61363adf485e35e https://www.encodeproject.org/files/ENCFF151YAO/@@download/ENCFF151YAO.bam released s3://encode-public/2016/08/09/f4e3c8a9-0ef9-489c-846d-f7c758a3089f/ENCFF151YAO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF337ZUN bam bam alignments GRCh38 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HPI/ 601303187 ENCODE Processing Pipeline 11ec608c7d3ebc473422b5a41adf6058 https://www.encodeproject.org/files/ENCFF337ZUN/@@download/ENCFF337ZUN.bam released s3://encode-public/2016/08/09/99474525-1863-4b40-b335-19a56dd85829/ENCFF337ZUN.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF381QLN bam bam unfiltered alignments hg19 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HPI/ 868654290 ENCODE Processing Pipeline 1d30698a3410fb098ae18dcbe6b653e2 https://www.encodeproject.org/files/ENCFF381QLN/@@download/ENCFF381QLN.bam released s3://encode-public/2016/11/13/ea9d4cff-5bee-427a-9923-29efdb3cb7c5/ENCFF381QLN.bam ENCODE3 hg19 archived low read depth, low read length ENCFF945XQT bam bam alignments hg19 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HPI/ 601587074 ENCODE Processing Pipeline f2e036db360105d1c7f2426105a97eda https://www.encodeproject.org/files/ENCFF945XQT/@@download/ENCFF945XQT.bam released s3://encode-public/2016/11/13/80de9992-4b1d-40e9-9744-26d4305d3881/ENCFF945XQT.bam ENCODE3 hg19 archived low read depth, low read length ENCFF994QQR bam bam unfiltered alignments GRCh38 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HPI/ 855918081 ENCODE Processing Pipeline e5587bc0b971bae2a4e1cb608b599451 https://www.encodeproject.org/files/ENCFF994QQR/@@download/ENCFF994QQR.bam released s3://encode-public/2020/09/03/59be8b27-6fb8-462d-8823-2338b0f079eb/ENCFF994QQR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF403MDU bam bam alignments GRCh38 ENCSR000DUN Control ChIP-seq /human-donors/ENCDO000AAM/ EFO:0002793 HL-60 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HPI/ 665379832 ENCODE Processing Pipeline 6722a17e360f4bb043c720706c2579d4 https://www.encodeproject.org/files/ENCFF403MDU/@@download/ENCFF403MDU.bam released s3://encode-public/2020/09/03/43ab98f7-112a-4ad8-97e6-647d6775bf84/ENCFF403MDU.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000WXQ bam bam alignments hg19 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WXY/ 710868808 Peggy Farnham, USC f99106bfd5aa8d4fe04bde3b81fb263a https://www.encodeproject.org/files/ENCFF000WXQ/@@download/ENCFF000WXQ.bam archived s3://encode-public/2010/12/06/0d15483f-a535-4a7c-92aa-42362aa2696e/ENCFF000WXQ.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000WXR bigWig bigWig signal hg19 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 /files/ENCFF000WXQ/ 467488987 Peggy Farnham, USC d9440712594f1a081693b5e149ac13a7 https://www.encodeproject.org/files/ENCFF000WXR/@@download/ENCFF000WXR.bigWig archived s3://encode-public/2010/12/06/3dc206b2-e51d-4062-9145-d7df8d6c372a/ENCFF000WXR.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000WXY fastq fastq reads ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 single-ended 935056647 Peggy Farnham, USC c4bc43e2ef78e0d054d0030bd34c4749 SRA:SRR10049453 https://www.encodeproject.org/files/ENCFF000WXY/@@download/ENCFF000WXY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/9272733c-6828-4e03-b03d-f243bd135829/ENCFF000WXY.fastq.gz low read depth insufficient read length ENCFF474FIQ bam bam unfiltered alignments GRCh38 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WXY/, /files/ENCFF643CGH/ 1272778660 ENCODE Processing Pipeline 2b2336b6e9de27012186a9441e008241 https://www.encodeproject.org/files/ENCFF474FIQ/@@download/ENCFF474FIQ.bam released s3://encode-public/2016/07/13/8e5b4f18-1989-4867-bc99-20e9c81c5952/ENCFF474FIQ.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF144WYV bam bam alignments GRCh38 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WXY/, /files/ENCFF643CGH/ 789506934 ENCODE Processing Pipeline 08f341e9a19f3f1cd44680f1d51c8ab1 https://www.encodeproject.org/files/ENCFF144WYV/@@download/ENCFF144WYV.bam released s3://encode-public/2016/07/13/0ca2c5ce-4d62-4578-adee-e97bdd9b7d6b/ENCFF144WYV.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF577QFF bam bam unfiltered alignments hg19 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WXY/, /files/ENCFF807MUK/ 1267618803 ENCODE Processing Pipeline c338e5a8458e521d380d3e7d1d74d224 https://www.encodeproject.org/files/ENCFF577QFF/@@download/ENCFF577QFF.bam released s3://encode-public/2016/08/23/0054eaae-c663-4581-8d0d-abfbf0ef34d1/ENCFF577QFF.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF549MIW bam bam alignments hg19 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WXY/, /files/ENCFF807MUK/ 789941544 ENCODE Processing Pipeline eb774817c45b1d97403379ebc3a773f1 https://www.encodeproject.org/files/ENCFF549MIW/@@download/ENCFF549MIW.bam released s3://encode-public/2016/08/23/ba571a80-c846-42ad-b7aa-3eca4b47a976/ENCFF549MIW.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF633OWU bam bam unfiltered alignments GRCh38 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WXY/, /files/ENCFF110MCL/ 1235542639 ENCODE Processing Pipeline d1532e3957003be23b9ea34dfa61ab80 https://www.encodeproject.org/files/ENCFF633OWU/@@download/ENCFF633OWU.bam released s3://encode-public/2020/09/03/296d18a8-9277-4827-af68-a5c1ca75c852/ENCFF633OWU.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF493CYY bam bam alignments GRCh38 ENCSR000EVA Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000WXY/, /files/ENCFF110MCL/ 821038050 ENCODE Processing Pipeline a5f4bfb7aaf497f552369b1f317b733a https://www.encodeproject.org/files/ENCFF493CYY/@@download/ENCFF493CYY.bam released s3://encode-public/2020/09/03/69e1a1ef-3c95-42c3-90a2-8974875559bd/ENCFF493CYY.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF000RRT bam bam alignments hg19 ENCSR000DLH Control ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 35 1236002306 Vishwanath Iyer, UTA 109799ecae745cfc4ad5a73eb9281f5f https://www.encodeproject.org/files/ENCFF000RRT/@@download/ENCFF000RRT.bam archived s3://encode-public/2012/07/26/37c5bc33-e0ff-41e5-8019-7fb70b70603e/ENCFF000RRT.bam Lab custom hg19 archived low read depth ENCFF000RRU bigWig bigWig signal hg19 ENCSR000DLH Control ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 4893241418 Vishwanath Iyer, UTA 3d79a65a35f200bb5cada2dbb93e8616 https://www.encodeproject.org/files/ENCFF000RRU/@@download/ENCFF000RRU.bigWig archived s3://encode-public/2012/07/26/79c6be18-be22-46b3-b413-239927ef78da/ENCFF000RRU.bigWig Lab custom hg19 archived low read depth ENCFF000RTH fastq fastq reads ENCSR000DLH Control ChIP-seq /human-donors/ENCDO000ACO/ EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 1494085822 Vishwanath Iyer, UTA e1fe7e384279493e5b3387d20da7c4ca https://www.encodeproject.org/files/ENCFF000RTH/@@download/ENCFF000RTH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/15477db2-7c26-4583-adf6-ed885c24da85/ENCFF000RTH.fastq.gz low read depth ENCFF906RZN bam bam unfiltered alignments GRCh38 ENCSR000DLH Control ChIP-seq /human-donors/ENCDO000ACO/ EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RTH/, /files/ENCFF643CGH/ 1731716362 ENCODE Processing Pipeline e2f9e63ad688ffbea1ccfb6b0d4eb1ab https://www.encodeproject.org/files/ENCFF906RZN/@@download/ENCFF906RZN.bam released s3://encode-public/2018/02/22/ba0d9ec8-f0fd-4c3e-b64a-fede360d4540/ENCFF906RZN.bam ENCODE3 GRCh38 archived low read depth ENCFF615YNZ bam bam unfiltered alignments hg19 ENCSR000DLH Control ChIP-seq /human-donors/ENCDO000ACO/ EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RTH/, /files/ENCFF807MUK/ 1726895704 ENCODE Processing Pipeline 33c6a7374f0ddda148b4eb5ff5de2d7b https://www.encodeproject.org/files/ENCFF615YNZ/@@download/ENCFF615YNZ.bam released s3://encode-public/2018/02/22/223454e2-75a7-484a-92f3-884852bad537/ENCFF615YNZ.bam ENCODE3 hg19 archived low read depth ENCFF515AXB bam bam alignments GRCh38 ENCSR000DLH Control ChIP-seq /human-donors/ENCDO000ACO/ EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RTH/, /files/ENCFF643CGH/ 693106515 ENCODE Processing Pipeline 3b8aa83bd6178a185d1834ea36e50b3c https://www.encodeproject.org/files/ENCFF515AXB/@@download/ENCFF515AXB.bam released s3://encode-public/2017/04/09/c27f7050-bbb9-4588-866a-61d034d99a6f/ENCFF515AXB.bam ENCODE3 GRCh38 archived low read depth ENCFF314ZWW bam bam alignments hg19 ENCSR000DLH Control ChIP-seq /human-donors/ENCDO000ACO/ EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RTH/, /files/ENCFF807MUK/ 692870516 ENCODE Processing Pipeline bd548f1bfe3d9eaa306eeaee957a96bc https://www.encodeproject.org/files/ENCFF314ZWW/@@download/ENCFF314ZWW.bam released s3://encode-public/2017/04/11/333047ac-f77b-4a7e-8ebd-7b1a50ef19c5/ENCFF314ZWW.bam ENCODE3 hg19 archived low read depth ENCFF028HMU bam bam unfiltered alignments GRCh38 ENCSR000DLH Control ChIP-seq /human-donors/ENCDO000ACO/ EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RTH/ 1778237021 ENCODE Processing Pipeline 4d3a6b89713867baec10922e353e4064 https://www.encodeproject.org/files/ENCFF028HMU/@@download/ENCFF028HMU.bam released s3://encode-public/2020/09/03/0f524acb-df86-4c7c-ab04-ba8845255cfc/ENCFF028HMU.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF644WRN bam bam alignments GRCh38 ENCSR000DLH Control ChIP-seq /human-donors/ENCDO000ACO/ EFO:0005352 GM20000 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RTH/ 636525230 ENCODE Processing Pipeline 851651867c6dc51f4c6f2a1d2c23a72d https://www.encodeproject.org/files/ENCFF644WRN/@@download/ENCFF644WRN.bam released s3://encode-public/2020/09/03/4ce20394-f663-410e-8f68-058e3ec72127/ENCFF644WRN.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF527CLI fastq fastq reads ENCSR481GRU Control ChIP-seq /worm-donors/ENCDO666TEB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis 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'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF527CLI/ 750880140 Kevin White, UChicago 7b4c5a5ded751e8696b27b1d242aa2fe https://www.encodeproject.org/files/ENCFF427ACU/@@download/ENCFF427ACU.bam released s3://encode-public/2015/08/07/c3585c5b-ebae-4f1a-aef6-4b1c728ff67b/ENCFF427ACU.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF968GNV bigWig bigWig signal of unique reads ce10 ENCSR481GRU Control ChIP-seq /worm-donors/ENCDO666TEB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF427ACU/ 9959563 Kevin White, UChicago 6b458a7cef60bea1c214e98bd5c9c6f2 https://www.encodeproject.org/files/ENCFF968GNV/@@download/ENCFF968GNV.bigWig released s3://encode-public/2015/10/02/4b361d57-df26-439e-9917-01ffe16318de/ENCFF968GNV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF579IBD bigWig bigWig read-depth normalized signal ce10 ENCSR481GRU Control ChIP-seq /worm-donors/ENCDO666TEB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF427ACU/ 9960413 Kevin White, UChicago 3b9734787b663ac594797bcc56e2ad79 https://www.encodeproject.org/files/ENCFF579IBD/@@download/ENCFF579IBD.bigWig released s3://encode-public/2015/10/02/17ee2b77-c698-4c9f-b7db-a6484dfc7b10/ENCFF579IBD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF205CSS bam bam alignments ce11 ENCSR481GRU Control ChIP-seq /worm-donors/ENCDO666TEB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF527CLI/ 751514904 Kevin White, UChicago c66eab10b5fd76a75579b357a09a7f61 https://www.encodeproject.org/files/ENCFF205CSS/@@download/ENCFF205CSS.bam released s3://encode-public/2016/01/19/188bc4ed-58b1-4cc1-9187-43586640ebed/ENCFF205CSS.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF026IGN bigWig bigWig signal of unique reads ce11 ENCSR481GRU Control ChIP-seq /worm-donors/ENCDO666TEB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF205CSS/ 9954195 Kevin White, UChicago c0feaba5682641733cdd61eba0bf913e https://www.encodeproject.org/files/ENCFF026IGN/@@download/ENCFF026IGN.bigWig released s3://encode-public/2016/02/03/7da9d5d2-8fac-4b2e-a1a4-c541f0370d4c/ENCFF026IGN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF509PDU bigWig bigWig read-depth normalized signal ce11 ENCSR481GRU Control ChIP-seq /worm-donors/ENCDO666TEB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF205CSS/ 9953121 Kevin White, UChicago 46275abadef98550353c041b51c775b8 https://www.encodeproject.org/files/ENCFF509PDU/@@download/ENCFF509PDU.bigWig released s3://encode-public/2016/02/03/d58fb0fb-4d3d-4c29-b67c-48e685ed0c8f/ENCFF509PDU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF000SCH bam bam alignments hg19 ENCSR685MHU Control ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-27 ENCODE see document 36 1135812865 Vishwanath Iyer, UTA 490c5d71e6c847ca77d93b562f173a6a https://www.encodeproject.org/files/ENCFF000SCH/@@download/ENCFF000SCH.bam archived s3://encode-public/2012/07/26/0aadaef9-381e-4e14-b2bd-45b0d76ea765/ENCFF000SCH.bam Lab custom hg19 archived low read length ENCFF000SCI bigWig bigWig signal hg19 ENCSR685MHU Control ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-27 ENCODE see document 4278661056 Vishwanath Iyer, UTA 10c502bdfbdcdbf2fffee2318626c6e7 https://www.encodeproject.org/files/ENCFF000SCI/@@download/ENCFF000SCI.bigWig archived s3://encode-public/2012/07/26/6273a2a8-6c50-44a5-aca7-6b47e09db035/ENCFF000SCI.bigWig Lab custom hg19 archived low read length ENCFF000SCP fastq fastq reads ENCSR685MHU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 single-ended 1080662081 Vishwanath Iyer, UTA f8628418043a552db8de137ffdadcabf https://www.encodeproject.org/files/ENCFF000SCP/@@download/ENCFF000SCP.fastq.gz Illumina Genome Analyzer archived s3://encode-public/2012/07/26/414984ff-87d7-4e20-90b6-16c988bf245d/ENCFF000SCP.fastq.gz low read length ENCFF970OKV bam bam unfiltered alignments GRCh38 ENCSR685MHU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 /files/ENCFF000SCP/, /files/ENCFF643CGH/ 1490432758 ENCODE Processing Pipeline 44d9083511d6f77d5ab1357b7db835d4 https://www.encodeproject.org/files/ENCFF970OKV/@@download/ENCFF970OKV.bam archived s3://encode-public/2016/10/26/9f1c3b0a-ae68-4ba4-9788-f7e548d012ae/ENCFF970OKV.bam ENCODE3 GRCh38 released low read length ENCFF993PWU bam bam alignments GRCh38 ENCSR685MHU Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 /files/ENCFF000SCP/, /files/ENCFF643CGH/ 924027642 ENCODE Processing Pipeline 426ac40410db44d0e88712fe0c08936a https://www.encodeproject.org/files/ENCFF993PWU/@@download/ENCFF993PWU.bam archived s3://encode-public/2016/10/26/fcb69d95-6b7c-4f02-b400-fca33e59a364/ENCFF993PWU.bam ENCODE3 GRCh38 released low read length ENCFF983RLF fastq fastq reads ENCSR267JAO Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF183ZNU/ 2660734468 Michael Snyder, Stanford e1953e5a1da6dfa2ac077a3208725a13 https://www.encodeproject.org/files/ENCFF983RLF/@@download/ENCFF983RLF.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/c3d1f478-6f07-4c55-85de-4e0e84b5575b/ENCFF983RLF.fastq.gz mild to moderate bottlenecking ENCFF183ZNU fastq fastq reads ENCSR267JAO Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF983RLF/ 2714919762 Michael Snyder, Stanford 60eb3eb3ccf7ebbb7e4fb6b94c567d73 https://www.encodeproject.org/files/ENCFF183ZNU/@@download/ENCFF183ZNU.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/a9d066e0-e408-4b95-b569-014381ac4304/ENCFF183ZNU.fastq.gz mild to moderate bottlenecking ENCFF343HJK bam bam alignments GRCh38 ENCSR267JAO Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF183ZNU/, /files/ENCFF983RLF/, /files/ENCFF110MCL/ 3980869299 ENCODE Processing Pipeline 4b2fda05e2c35b2242f49df1da7ed552 https://www.encodeproject.org/files/ENCFF343HJK/@@download/ENCFF343HJK.bam released s3://encode-public/2021/08/30/f7228bcc-2440-4e40-acce-3cede25ab1c0/ENCFF343HJK.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF817RFD bam bam unfiltered alignments GRCh38 ENCSR267JAO Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF183ZNU/, /files/ENCFF983RLF/, /files/ENCFF110MCL/ 5175124181 ENCODE Processing Pipeline ffafa46577496feffda11224cd4b9ce5 https://www.encodeproject.org/files/ENCFF817RFD/@@download/ENCFF817RFD.bam released s3://encode-public/2021/08/30/01028978-18f8-4fe6-aeda-09fe68d382ab/ENCFF817RFD.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF002BXL fastq fastq reads ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 773415140 Bing Ren, UCSD 3fdebc1fbde7e8e0ef32a80cc9d24662 SRA:SRR3652508 https://www.encodeproject.org/files/ENCFF002BXL/@@download/ENCFF002BXL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/d6b16f22-9977-4816-8541-200c92cc913c/ENCFF002BXL.fastq.gz low read depth, low read length ENCFF002BXM fastq fastq reads ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 834376315 Bing Ren, UCSD e30ab740154e7b0ee4cf990249531eb2 SRA:SRR3652509 https://www.encodeproject.org/files/ENCFF002BXM/@@download/ENCFF002BXM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/43b1fcc4-b50b-4df5-b220-4dd6eeedf821/ENCFF002BXM.fastq.gz low read depth, low read length ENCFF901LSF bam bam unfiltered 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low read depth, low read length ENCFF395ALO bam bam alignments mm10-minimal ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXM/ 629280110 ENCODE Processing Pipeline da571bc25403102ec627f7259e6de5a9 https://www.encodeproject.org/files/ENCFF395ALO/@@download/ENCFF395ALO.bam archived s3://encode-public/2015/03/20/4c419de0-4ad5-4acc-821b-0f0b66366840/ENCFF395ALO.bam low read depth, low read length ENCFF956BKJ bam bam alignments mm10-minimal ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXL/ 582712853 ENCODE Processing Pipeline 4b31d02343ab9b2579ee351394fb4f88 https://www.encodeproject.org/files/ENCFF956BKJ/@@download/ENCFF956BKJ.bam archived s3://encode-public/2015/03/20/2b183f5d-4040-4d51-8391-03a58891e6cf/ENCFF956BKJ.bam low read depth, low read length ENCFF219UHY bam bam unfiltered alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXM/ 1071902014 ENCODE Processing Pipeline 0a37fc1e2c8bd4efa6e5fc04425a13c5 https://www.encodeproject.org/files/ENCFF219UHY/@@download/ENCFF219UHY.bam released s3://encode-public/2016/05/20/3a3e8a90-91b8-4673-b2be-4f6290476029/ENCFF219UHY.bam ENCODE3 mm10 archived low read depth, low read length ENCFF725CNO bam bam unfiltered alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXL/ 992134621 ENCODE Processing Pipeline b6ca32487ab6bc83117d31da270682fa https://www.encodeproject.org/files/ENCFF725CNO/@@download/ENCFF725CNO.bam released s3://encode-public/2016/05/20/ab1235db-f59d-4bdf-8496-95228db9d603/ENCFF725CNO.bam ENCODE3 mm10 archived low read depth, low read length ENCFF052SGY bam bam alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXL/ 582473425 ENCODE Processing Pipeline 14d1b48688a686f97715dea32a03f968 https://www.encodeproject.org/files/ENCFF052SGY/@@download/ENCFF052SGY.bam released s3://encode-public/2016/05/20/d58cd8fb-9123-4b05-9f62-bbcd9f7308d6/ENCFF052SGY.bam ENCODE3 mm10 archived low read depth, low read length ENCFF488PXJ bam bam alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXM/ 629047829 ENCODE Processing Pipeline cf2bdb9bf50dfb3deeaa4e7a5e7729eb https://www.encodeproject.org/files/ENCFF488PXJ/@@download/ENCFF488PXJ.bam released s3://encode-public/2016/05/20/b461534b-f27b-4407-a161-0cab602f4100/ENCFF488PXJ.bam ENCODE3 mm10 archived low read depth, low read length ENCFF270CNF bam bam unfiltered alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXM/ 1041759680 ENCODE Processing Pipeline 1c3dcc8ce4d90ba66cdc2a8a88717f27 https://www.encodeproject.org/files/ENCFF270CNF/@@download/ENCFF270CNF.bam released s3://encode-public/2020/10/08/49211be3-1544-4013-9b5e-22fb85f052ea/ENCFF270CNF.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF907EPW bam bam alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXL/ 626395406 ENCODE Processing Pipeline 36760feed6b8ecbced94751b080fd340 https://www.encodeproject.org/files/ENCFF907EPW/@@download/ENCFF907EPW.bam released s3://encode-public/2020/10/08/d937be9f-3d22-4b61-81cf-702e77f64e98/ENCFF907EPW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF096TEV bam bam unfiltered alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXL/ 964673302 ENCODE Processing Pipeline ff03ad5e87043e853d4b6fb17495c7b6 https://www.encodeproject.org/files/ENCFF096TEV/@@download/ENCFF096TEV.bam released s3://encode-public/2020/10/08/5de502f1-7e94-43ab-a658-7fca5d35f57b/ENCFF096TEV.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF592RAD bam bam alignments mm10 ENCSR587JRQ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002BXM/ 677209778 ENCODE Processing Pipeline ae2062f15f4ecd2e0419c43f2fdd3692 https://www.encodeproject.org/files/ENCFF592RAD/@@download/ENCFF592RAD.bam released s3://encode-public/2020/10/08/fe9e7d30-a50b-4658-8468-e05f87b78037/ENCFF592RAD.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF529CZZ fastq fastq reads ENCSR855KRW Control ChIP-seq /fly-donors/ENCDO259RFU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35402/'], '@type': ['Target', 'Item'], 'name': 'Mio-dmelanogaster', 'label': 'Mio', '@id': '/targets/Mio-dmelanogaster/', 'title': 'Mio (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '2c1ac3f2-fb4b-426d-8479-0d8cb5f39964', 'status': 'released'} dm3 2L 21246797 21327926 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 50 single-ended 2193535919 Kevin White, UChicago 2886a7e2af83b62ac2ddeedc7839aa9f https://www.encodeproject.org/files/ENCFF529CZZ/@@download/ENCFF529CZZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/8e29e0ff-f6aa-4277-a293-497e8742aeff/ENCFF529CZZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF879VNB bam bam alignments dm3 ENCSR855KRW Control ChIP-seq /fly-donors/ENCDO259RFU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35402/'], '@type': ['Target', 'Item'], 'name': 'Mio-dmelanogaster', 'label': 'Mio', '@id': '/targets/Mio-dmelanogaster/', 'title': 'Mio (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '2c1ac3f2-fb4b-426d-8479-0d8cb5f39964', 'status': 'released'} dm3 2L 21246797 21327926 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF529CZZ/ 2957058369 Kevin White, UChicago c81fffa2b2dfbfe24e7d0fbfd16fde6b https://www.encodeproject.org/files/ENCFF879VNB/@@download/ENCFF879VNB.bam released s3://encode-public/2015/08/03/86fac572-6a07-4b1a-9698-5655cef20ab2/ENCFF879VNB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF467BOQ bigWig bigWig read-depth normalized signal dm3 ENCSR855KRW Control ChIP-seq /fly-donors/ENCDO259RFU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35402/'], '@type': ['Target', 'Item'], 'name': 'Mio-dmelanogaster', 'label': 'Mio', '@id': '/targets/Mio-dmelanogaster/', 'title': 'Mio (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '2c1ac3f2-fb4b-426d-8479-0d8cb5f39964', 'status': 'released'} dm3 2L 21246797 21327926 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF879VNB/ 15563247 Kevin White, UChicago c0128f3d079a412e1a8c2920f69147b2 https://www.encodeproject.org/files/ENCFF467BOQ/@@download/ENCFF467BOQ.bigWig released s3://encode-public/2015/10/06/b4fd20cc-7a2c-4543-8c8a-20a80d3f4dd2/ENCFF467BOQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF532ABB bigWig bigWig signal of unique reads dm3 ENCSR855KRW Control ChIP-seq /fly-donors/ENCDO259RFU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35402/'], '@type': ['Target', 'Item'], 'name': 'Mio-dmelanogaster', 'label': 'Mio', '@id': '/targets/Mio-dmelanogaster/', 'title': 'Mio (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '2c1ac3f2-fb4b-426d-8479-0d8cb5f39964', 'status': 'released'} dm3 2L 21246797 21327926 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF879VNB/ 15552162 Kevin White, UChicago 2ec0745b7f952ce74b52dd2790f508c4 https://www.encodeproject.org/files/ENCFF532ABB/@@download/ENCFF532ABB.bigWig released s3://encode-public/2015/10/06/4ac9bfd4-83d1-4d68-9a65-a5b74579b791/ENCFF532ABB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF206QGF bam bam alignments dm6 ENCSR855KRW Control ChIP-seq /fly-donors/ENCDO259RFU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35402/'], '@type': ['Target', 'Item'], 'name': 'Mio-dmelanogaster', 'label': 'Mio', '@id': '/targets/Mio-dmelanogaster/', 'title': 'Mio (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '2c1ac3f2-fb4b-426d-8479-0d8cb5f39964', 'status': 'released'} dm3 2L 21246797 21327926 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF529CZZ/ 2949082400 Kevin White, UChicago 7434f87b522b55c2be87280d17ea6214 https://www.encodeproject.org/files/ENCFF206QGF/@@download/ENCFF206QGF.bam released s3://encode-public/2016/04/22/e5febfcd-4d66-4ae0-b4d0-a63406155b5a/ENCFF206QGF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF460VED bigWig bigWig read-depth normalized signal dm6 ENCSR855KRW Control ChIP-seq /fly-donors/ENCDO259RFU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35402/'], '@type': ['Target', 'Item'], 'name': 'Mio-dmelanogaster', 'label': 'Mio', '@id': '/targets/Mio-dmelanogaster/', 'title': 'Mio (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '2c1ac3f2-fb4b-426d-8479-0d8cb5f39964', 'status': 'released'} dm3 2L 21246797 21327926 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF206QGF/ 17610900 Kevin White, UChicago 330ac0d42585351ffe992324ac52ba99 https://www.encodeproject.org/files/ENCFF460VED/@@download/ENCFF460VED.bigWig released s3://encode-public/2016/06/20/0aed1507-e134-40e9-8b3b-53e11f5ceaf2/ENCFF460VED.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF890TGI bigWig bigWig signal of unique reads dm6 ENCSR855KRW Control ChIP-seq /fly-donors/ENCDO259RFU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35402/'], '@type': ['Target', 'Item'], 'name': 'Mio-dmelanogaster', 'label': 'Mio', '@id': '/targets/Mio-dmelanogaster/', 'title': 'Mio (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '2c1ac3f2-fb4b-426d-8479-0d8cb5f39964', 'status': 'released'} dm3 2L 21246797 21327926 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF206QGF/ 17618203 Kevin White, UChicago b39211b7e77f700fc4fac5793573b184 https://www.encodeproject.org/files/ENCFF890TGI/@@download/ENCFF890TGI.bigWig released s3://encode-public/2016/06/20/1b133838-4574-436b-80d3-375a45b5389c/ENCFF890TGI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001ZUV fastq fastq reads ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 757284826 Bing Ren, UCSD cfa17d2d40f1bb329f4e51098052eefd SRA:SRR3651334 https://www.encodeproject.org/files/ENCFF001ZUV/@@download/ENCFF001ZUV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/75c358b1-6ee1-4777-bf89-b8bf1ba5a087/ENCFF001ZUV.fastq.gz low read depth, low read length ENCFF001ZUW fastq fastq reads ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 536766338 Bing Ren, UCSD 3edb8444bab6101e94bb2b1dae01bec5 SRA:SRR3651333 https://www.encodeproject.org/files/ENCFF001ZUW/@@download/ENCFF001ZUW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/b8e5a108-fb6a-4635-b81f-56eb6a2d6c95/ENCFF001ZUW.fastq.gz low read depth, low read length ENCFF187OKC bam bam unfiltered alignments mm10-minimal ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUV/ 1000839352 ENCODE Processing Pipeline 6214aa0db14717537a4da1372b062cb4 https://www.encodeproject.org/files/ENCFF187OKC/@@download/ENCFF187OKC.bam archived s3://encode-public/2015/02/09/864d0858-891d-41a8-992f-75fe1aa06bed/ENCFF187OKC.bam low read depth, low read length ENCFF935HJM bam bam unfiltered alignments mm10-minimal ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUW/ 711097839 ENCODE Processing Pipeline 999302171a292fbb5839ac91d433068c https://www.encodeproject.org/files/ENCFF935HJM/@@download/ENCFF935HJM.bam archived s3://encode-public/2015/02/09/c44633a2-0a43-43b1-bec4-3ac9c3cd866a/ENCFF935HJM.bam low read depth, low read length ENCFF972ZKQ bam bam alignments mm10-minimal ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUW/ 458236437 ENCODE Processing Pipeline 52e2773ea867eaee77fbaf2ed4eeef4c https://www.encodeproject.org/files/ENCFF972ZKQ/@@download/ENCFF972ZKQ.bam archived s3://encode-public/2015/03/11/f6f58428-3fc5-46d9-8bc9-10b99ce67ecc/ENCFF972ZKQ.bam low read depth, low read length ENCFF033BGX bam bam alignments mm10-minimal ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUV/ 637383473 ENCODE Processing Pipeline b7249d2885f34d0817e8a9c4a238a4b8 https://www.encodeproject.org/files/ENCFF033BGX/@@download/ENCFF033BGX.bam archived s3://encode-public/2015/03/11/4daf89a9-e0a0-47b0-b019-34e1ab4234f5/ENCFF033BGX.bam low read depth, low read length ENCFF360BSX bam bam unfiltered alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUV/ 1002337653 ENCODE Processing Pipeline ce894da2860da305d40ae69d2ec87287 https://www.encodeproject.org/files/ENCFF360BSX/@@download/ENCFF360BSX.bam released s3://encode-public/2016/05/20/72a551a5-0e0c-4eab-81bf-a797acf5baf9/ENCFF360BSX.bam ENCODE3 mm10 archived low read depth, low read length ENCFF908FVL bam bam unfiltered alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUW/ 712099015 ENCODE Processing Pipeline 859a8cbf889804a46ebd28202f7b8daa https://www.encodeproject.org/files/ENCFF908FVL/@@download/ENCFF908FVL.bam released s3://encode-public/2016/05/20/92d7d7f4-33ee-4d7c-b382-ee0edfdfd688/ENCFF908FVL.bam ENCODE3 mm10 archived low read depth, low read length ENCFF468BIZ bam bam alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUW/ 458059422 ENCODE Processing Pipeline 26987a2fd4a3d87f67c12bf10672f7b4 https://www.encodeproject.org/files/ENCFF468BIZ/@@download/ENCFF468BIZ.bam released s3://encode-public/2016/05/20/a348b334-cd2b-4fb1-af47-4efdd672b122/ENCFF468BIZ.bam ENCODE3 mm10 archived low read depth, low read length ENCFF437LOC bam bam alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUV/ 637169204 ENCODE Processing Pipeline 322d064512a375573b7cfe64526c904c https://www.encodeproject.org/files/ENCFF437LOC/@@download/ENCFF437LOC.bam released s3://encode-public/2016/05/20/35325b92-988a-4f06-9542-e21f1d85e595/ENCFF437LOC.bam ENCODE3 mm10 archived low read depth, low read length ENCFF322DKN bam bam unfiltered alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUV/ 974838635 ENCODE Processing Pipeline b277b5b911b1377b3081fa327314749d https://www.encodeproject.org/files/ENCFF322DKN/@@download/ENCFF322DKN.bam released s3://encode-public/2020/10/10/08b5feaf-d5b7-41e3-987b-235ec1a2d1bb/ENCFF322DKN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF084QNR bam bam alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUW/ 492066192 ENCODE Processing Pipeline 6ec204a5d3a9e3c405748e09af7ae458 https://www.encodeproject.org/files/ENCFF084QNR/@@download/ENCFF084QNR.bam released s3://encode-public/2020/10/10/46e8f10d-aac8-4597-9774-8707b6234d39/ENCFF084QNR.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF721HVE bam bam unfiltered alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUW/ 692660435 ENCODE Processing Pipeline c1af9bc7b3d5911e48a4f2f89573e709 https://www.encodeproject.org/files/ENCFF721HVE/@@download/ENCFF721HVE.bam released s3://encode-public/2020/10/10/1ab1869c-e0ef-4aa8-9773-0b65348ab152/ENCFF721HVE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF313ITZ bam bam alignments mm10 ENCSR081UQY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUV/ 684696797 ENCODE Processing Pipeline 239b6701dca5fdbb5110fcb76b959e12 https://www.encodeproject.org/files/ENCFF313ITZ/@@download/ENCFF313ITZ.bam released s3://encode-public/2020/10/10/b8ff80c1-bf66-4af2-93c6-3d0487bb717e/ENCFF313ITZ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF000ZIM bam bam alignments hg19 ENCSR000DOY Control ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 34 1115769391 Kevin Struhl, HMS 60a5c6ffdb7ab092ba219a4fedbf7821 https://www.encodeproject.org/files/ENCFF000ZIM/@@download/ENCFF000ZIM.bam archived s3://encode-public/2010/10/20/d04a0b8c-6fbe-4aa7-862f-d16be9458c3d/ENCFF000ZIM.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000ZIN bigWig bigWig signal hg19 ENCSR000DOY Control ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 403448347 Kevin Struhl, HMS 5dc89eb113c07e7a43ceeb4df7180517 https://www.encodeproject.org/files/ENCFF000ZIN/@@download/ENCFF000ZIN.bigWig archived s3://encode-public/2010/10/20/407a2db8-8d5d-444b-8164-14dea939cdef/ENCFF000ZIN.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000ZIZ fastq fastq reads ENCSR000DOY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 2412775519 Kevin Struhl, HMS 05976ac64a4f6cc55d1df1825ffd329f https://www.encodeproject.org/files/ENCFF000ZIZ/@@download/ENCFF000ZIZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/1f9ae4f9-7bdd-4e60-a6c0-7f0a071c524c/ENCFF000ZIZ.fastq.gz mild to moderate bottlenecking, low read length ENCFF858VPI bam bam unfiltered alignments GRCh38 ENCSR000DOY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIZ/, /files/ENCFF643CGH/ 2802974935 ENCODE Processing Pipeline 6bc0e52fabbc6fc7fafd5e43d45f1085 https://www.encodeproject.org/files/ENCFF858VPI/@@download/ENCFF858VPI.bam released s3://encode-public/2016/10/26/9061535b-6abe-449b-8aca-15dce8a0ab5a/ENCFF858VPI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF120GKA bam bam alignments GRCh38 ENCSR000DOY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIZ/, /files/ENCFF643CGH/ 1760220808 ENCODE Processing Pipeline 87000a81b1256bd548043e6ca436aadb https://www.encodeproject.org/files/ENCFF120GKA/@@download/ENCFF120GKA.bam released s3://encode-public/2016/10/26/24f59de7-e0f6-4bf5-b744-6e7b022499b1/ENCFF120GKA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF502MJK bam bam alignments hg19 ENCSR000DOY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIZ/, /files/ENCFF807MUK/ 1760606992 ENCODE Processing Pipeline 9d9a6d96a8a04e925748c0b86f329cab https://www.encodeproject.org/files/ENCFF502MJK/@@download/ENCFF502MJK.bam released s3://encode-public/2017/12/15/4b6fcb64-daed-41bb-a6b2-af80b24a2bfe/ENCFF502MJK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF727OYN bam bam unfiltered alignments hg19 ENCSR000DOY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIZ/, /files/ENCFF807MUK/ 2787510189 ENCODE Processing Pipeline 76b582095b27a0104cacb9692bdb0baa https://www.encodeproject.org/files/ENCFF727OYN/@@download/ENCFF727OYN.bam released s3://encode-public/2017/12/15/82dbb698-e8a0-483a-a84f-1a5b8e2289eb/ENCFF727OYN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF691SVE bam bam unfiltered alignments GRCh38 ENCSR000DOY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIZ/, /files/ENCFF110MCL/ 2773272755 ENCODE Processing Pipeline c049668218c8abd4684546f8f07256a4 https://www.encodeproject.org/files/ENCFF691SVE/@@download/ENCFF691SVE.bam released s3://encode-public/2020/10/27/ff94c828-4e49-4618-8e3e-46ab37352cf1/ENCFF691SVE.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF710JCY bam bam alignments GRCh38 ENCSR000DOY Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIZ/, /files/ENCFF110MCL/ 1892374099 ENCODE Processing Pipeline 755e0881859ed73cfee6ae08fb6f185e https://www.encodeproject.org/files/ENCFF710JCY/@@download/ENCFF710JCY.bam released s3://encode-public/2020/10/27/1131b8f3-57c1-4dea-8b78-ed38c07c90b1/ENCFF710JCY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF000YAN bam bam alignments hg19 ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 34 /files/ENCFF000YAZ/ 1391354052 Sherman Weissman, Yale 16255e5d2415421765157b6989f07f94 https://www.encodeproject.org/files/ENCFF000YAN/@@download/ENCFF000YAN.bam archived s3://encode-public/2010/12/02/dfb8a0e6-1e73-4ed7-a530-2744209c9459/ENCFF000YAN.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000YAO bam bam alignments hg19 ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YAU/ 1821521670 Sherman Weissman, Yale 67ebcb59c79001c2ecc35da84cf04826 https://www.encodeproject.org/files/ENCFF000YAO/@@download/ENCFF000YAO.bam archived s3://encode-public/2010/12/02/072bd57a-86c8-478a-99aa-811a8522f8a7/ENCFF000YAO.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000YAP bigWig bigWig signal hg19 ENCSR000EZS Control ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 562024151 Sherman Weissman, Yale 8a0d7b21c273ad381f752e787acac3a1 https://www.encodeproject.org/files/ENCFF000YAP/@@download/ENCFF000YAP.bigWig archived s3://encode-public/2010/12/02/88215e1e-6c42-4863-a5c2-4a040dcf2a0b/ENCFF000YAP.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000YAU fastq fastq reads ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 34 single-ended 1395401966 Sherman Weissman, Yale 18d1307b1bfddaae0f9750dfd7d7792e https://www.encodeproject.org/files/ENCFF000YAU/@@download/ENCFF000YAU.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/e670222c-7c31-4815-b029-22e087e5f732/ENCFF000YAU.fastq.gz low read depth insufficient read length ENCFF000YAZ fastq fastq reads ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 34 single-ended 1111429956 Sherman Weissman, Yale ce48ffdaf2b0c60a979bc644e6ce7005 https://www.encodeproject.org/files/ENCFF000YAZ/@@download/ENCFF000YAZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/1595c837-d70e-45b4-be44-3c7c4f7316ad/ENCFF000YAZ.fastq.gz low read depth insufficient read length ENCFF792PHK bam bam alignments GRCh38 ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF110MCL/, /files/ENCFF000YAU/ 1200827863 ENCODE Processing Pipeline fd934195e73ae7f9c404614e251b70c6 https://www.encodeproject.org/files/ENCFF792PHK/@@download/ENCFF792PHK.bam released s3://encode-public/2020/10/27/f7e42fe5-df4b-4114-a0ba-7075393e3950/ENCFF792PHK.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF096CJM bam bam alignments GRCh38 ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 34 /files/ENCFF110MCL/, /files/ENCFF000YAZ/ 773804257 ENCODE Processing Pipeline 81ff4551990c5b0dd6a8c3013ec80bb4 https://www.encodeproject.org/files/ENCFF096CJM/@@download/ENCFF096CJM.bam released s3://encode-public/2020/10/27/9db59fa4-680d-4a40-a23e-ca27d9975e7e/ENCFF096CJM.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF812QEO bam bam unfiltered alignments GRCh38 ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF110MCL/, /files/ENCFF000YAU/ 1791012874 ENCODE Processing Pipeline 543b802f740cee44bd1b15fe58cf2339 https://www.encodeproject.org/files/ENCFF812QEO/@@download/ENCFF812QEO.bam released s3://encode-public/2020/10/27/77126a97-c2db-4a69-be22-20ce9f36f16a/ENCFF812QEO.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF513XGS bam bam unfiltered alignments GRCh38 ENCSR000EZS Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 34 /files/ENCFF110MCL/, /files/ENCFF000YAZ/ 1368703605 ENCODE Processing Pipeline 971db71500d7dad125978821e2f3534a https://www.encodeproject.org/files/ENCFF513XGS/@@download/ENCFF513XGS.bam released s3://encode-public/2020/10/27/2d7ce090-bde7-4449-9711-2ae680bab7a9/ENCFF513XGS.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF597KYO fastq fastq reads ENCSR398PIP Control ChIP-seq /fly-donors/ENCDO703NYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37822/'], '@type': ['Target', 'Item'], 'name': 'Sox14-dmelanogaster', 'label': 'Sox14', '@id': '/targets/Sox14-dmelanogaster/', 'title': 'Sox14 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60b968e7-fe9d-4dba-b131-3ec166687f92', 'status': 'released'} dm3 2R 19860476 19881794 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 484790613 Kevin White, UChicago d46f308972944def3418fd4c29eb9b82 https://www.encodeproject.org/files/ENCFF597KYO/@@download/ENCFF597KYO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/53e63133-af45-453b-b4fa-a82f5136e3b8/ENCFF597KYO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF389VFM bam bam alignments dm3 ENCSR398PIP Control ChIP-seq /fly-donors/ENCDO703NYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37822/'], '@type': ['Target', 'Item'], 'name': 'Sox14-dmelanogaster', 'label': 'Sox14', '@id': '/targets/Sox14-dmelanogaster/', 'title': 'Sox14 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60b968e7-fe9d-4dba-b131-3ec166687f92', 'status': 'released'} dm3 2R 19860476 19881794 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF597KYO/ 709935795 Kevin White, UChicago ee5c9a8eb3470b4ed0bc5633ac631a64 https://www.encodeproject.org/files/ENCFF389VFM/@@download/ENCFF389VFM.bam released s3://encode-public/2015/08/03/9306eff0-ab50-4cf7-a48f-ba8e1f1762a4/ENCFF389VFM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF540MFN bigWig bigWig signal of unique reads dm3 ENCSR398PIP Control ChIP-seq /fly-donors/ENCDO703NYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37822/'], '@type': ['Target', 'Item'], 'name': 'Sox14-dmelanogaster', 'label': 'Sox14', '@id': '/targets/Sox14-dmelanogaster/', 'title': 'Sox14 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60b968e7-fe9d-4dba-b131-3ec166687f92', 'status': 'released'} dm3 2R 19860476 19881794 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF389VFM/ 15178657 Kevin White, UChicago bf1da5b356a91123962f765516d76f00 https://www.encodeproject.org/files/ENCFF540MFN/@@download/ENCFF540MFN.bigWig released s3://encode-public/2015/10/06/ca7073ba-06a5-482d-b5f6-75379d01c7c1/ENCFF540MFN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF269PRF bigWig bigWig read-depth normalized signal dm3 ENCSR398PIP Control ChIP-seq /fly-donors/ENCDO703NYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37822/'], '@type': ['Target', 'Item'], 'name': 'Sox14-dmelanogaster', 'label': 'Sox14', '@id': '/targets/Sox14-dmelanogaster/', 'title': 'Sox14 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60b968e7-fe9d-4dba-b131-3ec166687f92', 'status': 'released'} dm3 2R 19860476 19881794 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF389VFM/ 15191958 Kevin White, UChicago 53a4adc993508f3eb98eba9fcb1c3818 https://www.encodeproject.org/files/ENCFF269PRF/@@download/ENCFF269PRF.bigWig released s3://encode-public/2015/10/06/f7d99dbb-dcc0-4ed2-9834-7f390bf8c0df/ENCFF269PRF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF751XRE bam bam alignments dm6 ENCSR398PIP Control ChIP-seq /fly-donors/ENCDO703NYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37822/'], '@type': ['Target', 'Item'], 'name': 'Sox14-dmelanogaster', 'label': 'Sox14', '@id': '/targets/Sox14-dmelanogaster/', 'title': 'Sox14 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60b968e7-fe9d-4dba-b131-3ec166687f92', 'status': 'released'} dm3 2R 19860476 19881794 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF597KYO/ 708547137 Kevin White, UChicago 3644513bd07869ee55b228b8f29a5b18 https://www.encodeproject.org/files/ENCFF751XRE/@@download/ENCFF751XRE.bam released s3://encode-public/2016/04/22/0be47d01-ba70-4c85-a30b-1843f431806e/ENCFF751XRE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF073YJQ bigWig bigWig signal of unique reads dm6 ENCSR398PIP Control ChIP-seq /fly-donors/ENCDO703NYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37822/'], '@type': ['Target', 'Item'], 'name': 'Sox14-dmelanogaster', 'label': 'Sox14', '@id': '/targets/Sox14-dmelanogaster/', 'title': 'Sox14 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60b968e7-fe9d-4dba-b131-3ec166687f92', 'status': 'released'} dm3 2R 19860476 19881794 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF751XRE/ 17274242 Kevin White, UChicago 6507024249d7be267a28502a9b87e649 https://www.encodeproject.org/files/ENCFF073YJQ/@@download/ENCFF073YJQ.bigWig released s3://encode-public/2016/06/20/eb6915af-5181-4e14-8930-defdbbe38063/ENCFF073YJQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF712GVA bigWig bigWig read-depth normalized signal dm6 ENCSR398PIP Control ChIP-seq /fly-donors/ENCDO703NYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37822/'], '@type': ['Target', 'Item'], 'name': 'Sox14-dmelanogaster', 'label': 'Sox14', '@id': '/targets/Sox14-dmelanogaster/', 'title': 'Sox14 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '60b968e7-fe9d-4dba-b131-3ec166687f92', 'status': 'released'} dm3 2R 19860476 19881794 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF751XRE/ 17288516 Kevin White, UChicago 8a40f099f38d5c3156e3349ac2b7f2f2 https://www.encodeproject.org/files/ENCFF712GVA/@@download/ENCFF712GVA.bigWig released s3://encode-public/2016/06/20/63848e70-9fe2-4366-8de8-eac259c315c4/ENCFF712GVA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF229JVZ fastq fastq reads ENCSR159LNW Control ChIP-seq /fly-donors/ENCDO276DNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41265/'], '@type': ['Target', 'Item'], 'name': 'jumu-dmelanogaster', 'label': 'jumu', '@id': '/targets/jumu-dmelanogaster/', 'title': 'jumu (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8c9364fd-8131-4497-9384-4cbb6754f7b5', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 520015838 Kevin White, UChicago eb07bd03369c8f5e1d94d641e06c281d https://www.encodeproject.org/files/ENCFF229JVZ/@@download/ENCFF229JVZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/9439e747-38e1-4b36-94bf-258e77829748/ENCFF229JVZ.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF978MYU bam bam alignments dm3 ENCSR159LNW Control ChIP-seq /fly-donors/ENCDO276DNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41265/'], '@type': ['Target', 'Item'], 'name': 'jumu-dmelanogaster', 'label': 'jumu', '@id': '/targets/jumu-dmelanogaster/', 'title': 'jumu (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8c9364fd-8131-4497-9384-4cbb6754f7b5', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF229JVZ/ 772776248 Kevin White, UChicago 9299d95dd72d522f73643f4cacd962b9 https://www.encodeproject.org/files/ENCFF978MYU/@@download/ENCFF978MYU.bam released s3://encode-public/2015/08/03/e6ed0e2d-f3cd-41ad-9bd7-043ef48d2d64/ENCFF978MYU.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF025NHY bigWig bigWig read-depth normalized signal dm3 ENCSR159LNW Control ChIP-seq /fly-donors/ENCDO276DNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41265/'], '@type': ['Target', 'Item'], 'name': 'jumu-dmelanogaster', 'label': 'jumu', '@id': '/targets/jumu-dmelanogaster/', 'title': 'jumu (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8c9364fd-8131-4497-9384-4cbb6754f7b5', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF978MYU/ 15342178 Kevin White, UChicago 713228a50d2d8d68144dfe628be25036 https://www.encodeproject.org/files/ENCFF025NHY/@@download/ENCFF025NHY.bigWig released s3://encode-public/2015/10/06/37bc8fe0-af38-4090-b8ba-66829971aab6/ENCFF025NHY.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF590JVI bigWig bigWig signal of unique reads dm3 ENCSR159LNW Control ChIP-seq /fly-donors/ENCDO276DNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41265/'], '@type': ['Target', 'Item'], 'name': 'jumu-dmelanogaster', 'label': 'jumu', '@id': '/targets/jumu-dmelanogaster/', 'title': 'jumu (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8c9364fd-8131-4497-9384-4cbb6754f7b5', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF978MYU/ 15288200 Kevin White, UChicago 21a3ed51ed0e4fbf4c9bb825ec40fec3 https://www.encodeproject.org/files/ENCFF590JVI/@@download/ENCFF590JVI.bigWig released s3://encode-public/2015/10/06/adf1da60-444c-48ea-91a2-71645062efe0/ENCFF590JVI.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF016TBY bam bam alignments dm6 ENCSR159LNW Control ChIP-seq /fly-donors/ENCDO276DNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41265/'], '@type': ['Target', 'Item'], 'name': 'jumu-dmelanogaster', 'label': 'jumu', '@id': '/targets/jumu-dmelanogaster/', 'title': 'jumu (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8c9364fd-8131-4497-9384-4cbb6754f7b5', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF229JVZ/ 769606599 Kevin White, UChicago 891d3d785cf12d08282decbf4ca96b8c https://www.encodeproject.org/files/ENCFF016TBY/@@download/ENCFF016TBY.bam released s3://encode-public/2016/04/21/6c4fda2f-28fb-4512-8a87-1f30573a8cc1/ENCFF016TBY.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF567XQC bigWig bigWig signal of unique reads dm6 ENCSR159LNW Control ChIP-seq /fly-donors/ENCDO276DNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41265/'], '@type': ['Target', 'Item'], 'name': 'jumu-dmelanogaster', 'label': 'jumu', '@id': '/targets/jumu-dmelanogaster/', 'title': 'jumu (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8c9364fd-8131-4497-9384-4cbb6754f7b5', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF016TBY/ 17370585 Kevin White, UChicago 00fc8b8b0fa1c9909d75e25927af3fe9 https://www.encodeproject.org/files/ENCFF567XQC/@@download/ENCFF567XQC.bigWig released s3://encode-public/2016/06/20/39edf4ab-44cf-4fe1-9d8a-90e432af9604/ENCFF567XQC.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF759KVA bigWig bigWig read-depth normalized signal dm6 ENCSR159LNW Control ChIP-seq /fly-donors/ENCDO276DNA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41265/'], '@type': ['Target', 'Item'], 'name': 'jumu-dmelanogaster', 'label': 'jumu', '@id': '/targets/jumu-dmelanogaster/', 'title': 'jumu (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '8c9364fd-8131-4497-9384-4cbb6754f7b5', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF016TBY/ 17436668 Kevin White, UChicago 635a948f077fc0d07e0b1ff7049168a5 https://www.encodeproject.org/files/ENCFF759KVA/@@download/ENCFF759KVA.bigWig released s3://encode-public/2016/06/20/6618bd9a-b170-4d63-85b8-a81a8dec48fa/ENCFF759KVA.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF001HKH bigWig bigWig raw signal hg19 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HKI/ 219482955 John Stamatoyannopoulos, UW 70c32b4d5fd0f20c18dad62e2204d069 https://www.encodeproject.org/files/ENCFF001HKH/@@download/ENCFF001HKH.bigWig archived s3://encode-public/2011/06/25/53117c43-c5d5-4988-b7d5-38105cea8aec/ENCFF001HKH.bigWig Lab custom hg19 archived low read length ENCFF001HKI bam bam alignments hg19 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HKT/ 1117100373 John Stamatoyannopoulos, UW a60ee4f14ae5dcabe946ca8ee7e7f4d1 https://www.encodeproject.org/files/ENCFF001HKI/@@download/ENCFF001HKI.bam archived s3://encode-public/2011/06/25/92099061-2402-48ce-b497-ac826fa88baa/ENCFF001HKI.bam Lab custom hg19 archived low read length ENCFF001HKT fastq fastq reads ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1182980395 John Stamatoyannopoulos, UW f0a791b8b4b7924ea5e0667926668fb7 https://www.encodeproject.org/files/ENCFF001HKT/@@download/ENCFF001HKT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/3e8225ab-2331-4c21-8d08-2c3ef4f67546/ENCFF001HKT.fastq.gz low read length ENCFF576BTF bam bam unfiltered alignments GRCh38 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HKT/ 1419248110 ENCODE Processing Pipeline 53e29e694ee6fbc1ebcca4b29a88cda0 https://www.encodeproject.org/files/ENCFF576BTF/@@download/ENCFF576BTF.bam released s3://encode-public/2016/08/09/787b283c-d393-448e-b6f7-30584426f8da/ENCFF576BTF.bam ENCODE3 GRCh38 archived low read length ENCFF880XKJ bam bam alignments GRCh38 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HKT/ 1028193051 ENCODE Processing Pipeline e77a8f5b7b35177afdcd21fab17788cf https://www.encodeproject.org/files/ENCFF880XKJ/@@download/ENCFF880XKJ.bam released s3://encode-public/2016/08/09/fbca1a94-c87e-4fb6-9427-279e4d9b66b9/ENCFF880XKJ.bam ENCODE3 GRCh38 archived low read length ENCFF536HQZ bam bam unfiltered alignments hg19 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HKT/ 1411419471 ENCODE Processing Pipeline 16c641acef1c6148790ded5602b12f87 https://www.encodeproject.org/files/ENCFF536HQZ/@@download/ENCFF536HQZ.bam released s3://encode-public/2016/11/13/bd430c71-a127-4c4a-b80e-a5860b5acaeb/ENCFF536HQZ.bam ENCODE3 hg19 archived low read length ENCFF661ZEZ bam bam alignments hg19 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HKT/ 1028308439 ENCODE Processing Pipeline a9ba22bc0a8933c60a0d022428c4c3aa https://www.encodeproject.org/files/ENCFF661ZEZ/@@download/ENCFF661ZEZ.bam released s3://encode-public/2016/11/13/404a16c5-98c3-4565-9f8d-7aaef8cd6ba7/ENCFF661ZEZ.bam ENCODE3 hg19 archived low read length ENCFF224PQN bam bam unfiltered alignments GRCh38 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HKT/, /files/ENCFF110MCL/ 1396376160 ENCODE Processing Pipeline b9b329c968d3c8f1bc07187be348491f https://www.encodeproject.org/files/ENCFF224PQN/@@download/ENCFF224PQN.bam released s3://encode-public/2020/09/03/cae94698-56ea-43a7-9d4e-2e8234a41fe2/ENCFF224PQN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF398DAG bam bam alignments GRCh38 ENCSR000DTG Control ChIP-seq /human-donors/ENCDO230AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HKT/, /files/ENCFF110MCL/ 1114272645 ENCODE Processing Pipeline 2463282d0a98af894e57012997f83b3c https://www.encodeproject.org/files/ENCFF398DAG/@@download/ENCFF398DAG.bam released s3://encode-public/2020/09/03/de075b0d-e201-44c9-91c2-38f2dc8e2b1f/ENCFF398DAG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001JYW bam bam alignments mm9 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 2 2_1 36 /files/ENCFF001JZE/ 420848540 Bing Ren, UCSD 03548767fe2481277d3d5b7d342cf834 https://www.encodeproject.org/files/ENCFF001JYW/@@download/ENCFF001JYW.bam archived s3://encode-public/2011/12/23/2d5f4294-b591-45ce-834d-58e4df15ce83/ENCFF001JYW.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF001JYX bam bam alignments mm9 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1 1_1 45 /files/ENCFF001JZL/ 1016720812 Bing Ren, UCSD 0ea34de484e14aa50e1cb6096d760ab2 https://www.encodeproject.org/files/ENCFF001JYX/@@download/ENCFF001JYX.bam archived s3://encode-public/2011/12/23/a59bd97d-dd7c-4e9b-afbb-0b980119e724/ENCFF001JYX.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF001JYZ bigWig bigWig signal mm9 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1, 2 1_1, 2_1 /files/ENCFF001JYW/, /files/ENCFF001JYX/ 74005241 Bing Ren, UCSD 7fd233de5cd70511023b93d183712f0d https://www.encodeproject.org/files/ENCFF001JYZ/@@download/ENCFF001JYZ.bigWig archived s3://encode-public/2011/12/23/3d8db36f-65b0-4bbc-8695-eebb3653c9da/ENCFF001JYZ.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF001JZE fastq fastq reads ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 2 2_1 36 single-ended 394295675 Bing Ren, UCSD 39af63acbc5308e7d404333ebee640ea https://www.encodeproject.org/files/ENCFF001JZE/@@download/ENCFF001JZE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/4da36a6e-837f-4181-ac4a-7f3b4c2ac8d2/ENCFF001JZE.fastq.gz low read depth, low read length, mixed read lengths insufficient read depth ENCFF001JZL fastq fastq reads ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1 1_1 45 single-ended 972787770 Bing Ren, UCSD 4480896e9c8dc7293ebc3f7ccce84b62 https://www.encodeproject.org/files/ENCFF001JZL/@@download/ENCFF001JZL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/b6de51f1-b61d-477c-b049-f1127cf97dc4/ENCFF001JZL.fastq.gz low read depth, low read length, mixed read lengths insufficient read depth ENCFF691MRC bam bam unfiltered alignments mm10-minimal ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1 1_1 45 /files/ENCFF001JZL/, /files/ENCFF806TVZ/ 1097328699 J. Michael Cherry, Stanford 99a82787e2ecc3e950f02e5e7ea0e26b https://www.encodeproject.org/files/ENCFF691MRC/@@download/ENCFF691MRC.bam archived s3://encode-public/2015/02/04/bf054c88-73ac-406b-a670-8afeba961357/ENCFF691MRC.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF928CZJ bam bam unfiltered alignments mm10-minimal ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 2 2_1 36 /files/ENCFF001JZE/, /files/ENCFF806TVZ/ 475162808 J. Michael Cherry, Stanford 5c8918bc551f896403485f57463260f5 https://www.encodeproject.org/files/ENCFF928CZJ/@@download/ENCFF928CZJ.bam archived s3://encode-public/2015/02/04/259aaf85-6ada-45b9-9f7e-1aeadee8e7fb/ENCFF928CZJ.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF436OKP bam bam alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001JZE/ 328418920 ENCODE Processing Pipeline 28b5e6d89f174212084efd8ba860e672 https://www.encodeproject.org/files/ENCFF436OKP/@@download/ENCFF436OKP.bam released s3://encode-public/2016/04/28/741269ff-8d0c-4ba7-80cb-eb2c28869dfd/ENCFF436OKP.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF265OGU bam bam unfiltered alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001JZE/ 476151338 ENCODE Processing Pipeline db4c2024d26dc5377c17bad4c321986d https://www.encodeproject.org/files/ENCFF265OGU/@@download/ENCFF265OGU.bam released s3://encode-public/2016/07/06/a30a3d75-4be4-4cb2-ba7e-c8e60536a1cc/ENCFF265OGU.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF572GJV bam bam alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1 1_1 36 /files/ENCFF001JZL/, /files/ENCFF309GLL/ 678608889 ENCODE Processing Pipeline 2780df1aae27564dad2ca1d92c4a0b90 https://www.encodeproject.org/files/ENCFF572GJV/@@download/ENCFF572GJV.bam released s3://encode-public/2020/10/12/0d733dd8-586c-4106-a973-d2ae04d8b76f/ENCFF572GJV.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths insufficient read depth ENCFF380RIM bam bam alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1 1_1 36 /files/ENCFF001JZL/, /files/ENCFF018NEO/ 633186768 ENCODE Processing Pipeline 978da62059b297ff6f8f9ea78576da40 https://www.encodeproject.org/files/ENCFF380RIM/@@download/ENCFF380RIM.bam released s3://encode-public/2016/11/28/95e12ab4-ef2e-45ba-b21d-a21c1180cfcb/ENCFF380RIM.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF262IDB bam bam unfiltered alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1 1_1 36 /files/ENCFF001JZL/, /files/ENCFF018NEO/ 948944387 ENCODE Processing Pipeline dbc960cfc2735cee9f6fd883d02e9222 https://www.encodeproject.org/files/ENCFF262IDB/@@download/ENCFF262IDB.bam released s3://encode-public/2016/11/28/3f8c130f-c9a3-4bd4-b854-5813f6d21b26/ENCFF262IDB.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths insufficient read depth ENCFF954NNE bam bam unfiltered alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 1 1_1 36 /files/ENCFF001JZL/, /files/ENCFF309GLL/ 929847127 ENCODE Processing Pipeline 72f89511c3ff0f675b12a9030baa2c0c https://www.encodeproject.org/files/ENCFF954NNE/@@download/ENCFF954NNE.bam released s3://encode-public/2020/10/12/b7314f1f-6539-496a-8d1e-07882a548a5b/ENCFF954NNE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths insufficient read depth ENCFF217FVS bam bam unfiltered alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 2 2_1 36 /files/ENCFF001JZE/, /files/ENCFF309GLL/ 465390188 ENCODE Processing Pipeline 7afbecb1784e4711be161b61c09b8540 https://www.encodeproject.org/files/ENCFF217FVS/@@download/ENCFF217FVS.bam released s3://encode-public/2020/10/12/a34ae031-17e6-40e3-aebb-66f982226283/ENCFF217FVS.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths insufficient read depth ENCFF024RNW bam bam alignments mm10 ENCSR000CFG Control ChIP-seq /mouse-donors/ENCDO081AAA/ CL:0002476 bone marrow macrophage primary cell Mus musculus DNA 2012-04-13 ENCODE see document 2 2_1 36 /files/ENCFF001JZE/, /files/ENCFF309GLL/ 354112626 ENCODE Processing Pipeline 8e6c647bb717c7b97246a980ceb9e25c https://www.encodeproject.org/files/ENCFF024RNW/@@download/ENCFF024RNW.bam released s3://encode-public/2020/10/12/ef7d904c-0333-4e1b-bd66-7f732cbe8d26/ENCFF024RNW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths insufficient read depth ENCFF001GYT bam bam alignments hg19 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZF/ 1056270934 John Stamatoyannopoulos, UW 0fe4cec03b194e29fbeaf3c1ab00db10 https://www.encodeproject.org/files/ENCFF001GYT/@@download/ENCFF001GYT.bam archived s3://encode-public/2011/06/25/75532e3b-83eb-45c4-8651-b528bb92d4ce/ENCFF001GYT.bam Lab custom hg19 archived low read length ENCFF001GYU bigWig bigWig raw signal hg19 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001GYT/ 204842479 John Stamatoyannopoulos, UW bcd6d383681bdab2584fc314381e7f42 https://www.encodeproject.org/files/ENCFF001GYU/@@download/ENCFF001GYU.bigWig archived s3://encode-public/2011/06/25/121a18ac-eae4-482c-baa2-85da8cbca904/ENCFF001GYU.bigWig Lab custom hg19 archived low read length ENCFF001GZF fastq fastq reads ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1102241710 John Stamatoyannopoulos, UW 3bcd870c0af70098b78425cfb57d037a https://www.encodeproject.org/files/ENCFF001GZF/@@download/ENCFF001GZF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/c5190be0-9435-4086-92a8-2818c94750dd/ENCFF001GZF.fastq.gz low read length ENCFF798MEL bam bam unfiltered alignments GRCh38 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GZF/ 1309823836 ENCODE Processing Pipeline b545c346e4e0ec285aacec6fd4b302b1 https://www.encodeproject.org/files/ENCFF798MEL/@@download/ENCFF798MEL.bam released s3://encode-public/2016/08/09/c77ac5b5-d376-4461-a033-eb670d5ed54a/ENCFF798MEL.bam ENCODE3 GRCh38 archived low read length ENCFF436GDS bam bam alignments GRCh38 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GZF/ 976186383 ENCODE Processing Pipeline 29d60c250d3b77f0247e1d2bfff794ef https://www.encodeproject.org/files/ENCFF436GDS/@@download/ENCFF436GDS.bam released s3://encode-public/2016/08/09/8c15f38c-c2c2-49d8-8bfc-ac3ef12d6617/ENCFF436GDS.bam ENCODE3 GRCh38 archived low read length ENCFF345HOL bam bam unfiltered alignments hg19 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GZF/ 1302444383 ENCODE Processing Pipeline f3309ce34459530cabfc59b626933720 https://www.encodeproject.org/files/ENCFF345HOL/@@download/ENCFF345HOL.bam released s3://encode-public/2016/11/13/408833b3-9e00-4afd-a82f-ddfc6977851c/ENCFF345HOL.bam ENCODE3 hg19 archived low read length ENCFF972ATQ bam bam alignments hg19 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GZF/ 976455491 ENCODE Processing Pipeline a9a17f0cb2273c5cb24da06183b59960 https://www.encodeproject.org/files/ENCFF972ATQ/@@download/ENCFF972ATQ.bam released s3://encode-public/2016/11/13/dfe7b0cf-e2a1-4613-aa07-a6f3201c7e5f/ENCFF972ATQ.bam ENCODE3 hg19 archived low read length ENCFF824MMP bam bam unfiltered alignments GRCh38 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZF/, /files/ENCFF110MCL/ 1290935925 ENCODE Processing Pipeline 82a3f36a6d87ab7a16040fd8d0187524 https://www.encodeproject.org/files/ENCFF824MMP/@@download/ENCFF824MMP.bam released s3://encode-public/2020/09/03/b6b7c73f-a586-4499-9860-eb9efc58539a/ENCFF824MMP.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF567HXW bam bam alignments GRCh38 ENCSR000DPZ Control ChIP-seq /human-donors/ENCDO175AAA/ CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZF/, /files/ENCFF110MCL/ 1050203068 ENCODE Processing Pipeline 9106d72ccd5d573a5557d64def7b7307 https://www.encodeproject.org/files/ENCFF567HXW/@@download/ENCFF567HXW.bam released s3://encode-public/2020/09/03/8525bbe0-1933-4226-9bfd-a0463714e9bb/ENCFF567HXW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000YPZ fastq fastq reads ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 single-ended 976117414 Sherman Weissman, Yale bd14c2a670a9f97d642a106dd324d9a1 https://www.encodeproject.org/files/ENCFF000YPZ/@@download/ENCFF000YPZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/9e096dcb-dc8f-4ed6-a685-029221a3d50a/ENCFF000YPZ.fastq.gz low read depth insufficient read length ENCFF000YQJ bigWig bigWig signal hg19 ENCSR000FBA Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 365115932 Sherman Weissman, Yale 31795b8e5c798488a6c19d3debe8dd63 https://www.encodeproject.org/files/ENCFF000YQJ/@@download/ENCFF000YQJ.bigWig archived s3://encode-public/2010/12/02/0fecadd1-7a2f-43a7-ab28-5dc156e44fe3/ENCFF000YQJ.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000YQM bam bam alignments hg19 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YPZ/ 1263870277 Sherman Weissman, Yale 24566e2649f50c93a76502782b226d65 https://www.encodeproject.org/files/ENCFF000YQM/@@download/ENCFF000YQM.bam archived s3://encode-public/2010/12/02/ed17074c-881d-4adf-bb29-890b4e1f8d1a/ENCFF000YQM.bam Lab custom hg19 archived low read depth insufficient read length ENCFF934ICB bam bam unfiltered alignments hg19 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000YPZ/ 1193667576 ENCODE Processing Pipeline 828d143489909668fdc4976cba20bd7b https://www.encodeproject.org/files/ENCFF934ICB/@@download/ENCFF934ICB.bam released s3://encode-public/2016/10/15/7d3f9d09-a729-418c-8755-b86aed59c45d/ENCFF934ICB.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF331ARQ bam bam alignments hg19 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000YPZ/ 533105436 ENCODE Processing Pipeline 07e8091b9771364554d71372a8ec691d https://www.encodeproject.org/files/ENCFF331ARQ/@@download/ENCFF331ARQ.bam released s3://encode-public/2016/10/15/b4cebaa0-972b-4117-be79-2dda0b68ee04/ENCFF331ARQ.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF583HKO bam bam unfiltered alignments GRCh38 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000YPZ/ 1197280124 ENCODE Processing Pipeline 2fa933c9d9c47b89f26368effc4bc986 https://www.encodeproject.org/files/ENCFF583HKO/@@download/ENCFF583HKO.bam released s3://encode-public/2016/12/13/54f2aaba-e2b0-49ec-a912-d2b8e336b55b/ENCFF583HKO.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF482LDC bam bam alignments GRCh38 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000YPZ/ 532434462 ENCODE Processing Pipeline e812803cfaaa20bfdd1bf29660b6dd60 https://www.encodeproject.org/files/ENCFF482LDC/@@download/ENCFF482LDC.bam released s3://encode-public/2016/12/13/1142316c-2aec-470e-aff4-d48c49642fbc/ENCFF482LDC.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF085PNC bam bam unfiltered alignments GRCh38 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YPZ/, /files/ENCFF110MCL/ 725649157 ENCODE Processing Pipeline 0e80565c2569846876c81e3156c4ad13 https://www.encodeproject.org/files/ENCFF085PNC/@@download/ENCFF085PNC.bam released s3://encode-public/2020/10/27/a2169ac5-7f43-4fce-a521-6b34b9cb394e/ENCFF085PNC.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF437ATZ bam bam alignments GRCh38 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YPZ/, /files/ENCFF110MCL/ 325636110 ENCODE Processing Pipeline bce9679699e37610acd901a1af6da829 https://www.encodeproject.org/files/ENCFF437ATZ/@@download/ENCFF437ATZ.bam released s3://encode-public/2020/10/27/dee6247d-50bf-46f9-a070-3168e5302c02/ENCFF437ATZ.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF075YEA bam bam unfiltered alignments GRCh38 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000YPZ/ 1114073158 ENCODE Processing Pipeline 2d67fb31adc6f0d95f6c541181dee847 https://www.encodeproject.org/files/ENCFF075YEA/@@download/ENCFF075YEA.bam released s3://encode-public/2021/02/04/4b18aee6-7b0d-47e8-b485-6ef68c954a16/ENCFF075YEA.bam ENCODE4 v1.6.1 GRCh38 released low read depth insufficient read length ENCFF023ECI bam bam alignments GRCh38 ENCSR000FBA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000YPZ/ 447850399 ENCODE Processing Pipeline 183141190cd5acb63470b35ff0274a63 https://www.encodeproject.org/files/ENCFF023ECI/@@download/ENCFF023ECI.bam released s3://encode-public/2021/02/04/ddfbebfb-023a-4ac2-a594-1774b703d74e/ENCFF023ECI.bam ENCODE4 v1.6.1 GRCh38 released low read depth insufficient read length ENCFF001HJZ bigWig bigWig raw signal hg19 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HKA/ 235514205 John Stamatoyannopoulos, UW 9d629279b7b59045ef1325850a2f5b56 https://www.encodeproject.org/files/ENCFF001HJZ/@@download/ENCFF001HJZ.bigWig archived s3://encode-public/2011/06/25/e72365d8-c2e0-40af-8744-16c0ddff7799/ENCFF001HJZ.bigWig Lab custom hg19 archived low read length ENCFF001HKA bam bam alignments hg19 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HKG/ 1232990235 John Stamatoyannopoulos, UW 2ce08da7ebf4f6b64c42bea529dcfa74 https://www.encodeproject.org/files/ENCFF001HKA/@@download/ENCFF001HKA.bam archived s3://encode-public/2011/06/25/f811e76e-101f-43f7-a2fb-414b8bea6a13/ENCFF001HKA.bam Lab custom hg19 archived low read length ENCFF001HKG fastq fastq reads ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1307102135 John Stamatoyannopoulos, UW fa03d2a422528a724f683a8d74df3773 https://www.encodeproject.org/files/ENCFF001HKG/@@download/ENCFF001HKG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/3b0e8daf-e269-4d5b-9fd2-28eeea2ffbcd/ENCFF001HKG.fastq.gz low read length ENCFF965YGZ bam bam unfiltered alignments GRCh38 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HKG/ 1571186084 ENCODE Processing Pipeline cd6b4320d926d7a199398d1ea46e5cfb https://www.encodeproject.org/files/ENCFF965YGZ/@@download/ENCFF965YGZ.bam released s3://encode-public/2016/08/09/23512cc0-6a5b-4ffa-99e3-cfa3d7abff09/ENCFF965YGZ.bam ENCODE3 GRCh38 archived low read length ENCFF683AKU bam bam alignments GRCh38 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HKG/ 1140882075 ENCODE Processing Pipeline a85088e8145ddc882e1ec8136c64069a https://www.encodeproject.org/files/ENCFF683AKU/@@download/ENCFF683AKU.bam released s3://encode-public/2016/08/09/89103031-43ca-4a39-a1ad-2ae8f47727c6/ENCFF683AKU.bam ENCODE3 GRCh38 archived low read length ENCFF699ETI bam bam unfiltered alignments hg19 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HKG/ 1561737071 ENCODE Processing Pipeline ede5e8dbf558f60286e337e450ed7ff2 https://www.encodeproject.org/files/ENCFF699ETI/@@download/ENCFF699ETI.bam released s3://encode-public/2016/11/13/a9dac436-a9ce-4e3b-9eac-b9d067008f06/ENCFF699ETI.bam ENCODE3 hg19 archived low read length ENCFF521ZBF bam bam alignments hg19 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HKG/ 1141076948 ENCODE Processing Pipeline 7875f42b08b14ee632c37418765bcb83 https://www.encodeproject.org/files/ENCFF521ZBF/@@download/ENCFF521ZBF.bam released s3://encode-public/2016/11/13/7dca966c-1b8b-417c-afd4-a113cf53f0e8/ENCFF521ZBF.bam ENCODE3 hg19 archived low read length ENCFF335BHU bam bam alignments GRCh38 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HKG/, /files/ENCFF110MCL/ 1239431385 ENCODE Processing Pipeline d6a6578f5f69fcba2be75d0236f2749f https://www.encodeproject.org/files/ENCFF335BHU/@@download/ENCFF335BHU.bam released s3://encode-public/2020/09/03/adc212d8-c713-42cd-a789-f0598369929b/ENCFF335BHU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF778HQV bam bam unfiltered alignments GRCh38 ENCSR000DTD Control ChIP-seq /human-donors/ENCDO095AAA/ CL:0002548 cardiac fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HKG/, /files/ENCFF110MCL/ 1538756857 ENCODE Processing Pipeline 505f413c6cd08e4bdf71db2f6b58cfd6 https://www.encodeproject.org/files/ENCFF778HQV/@@download/ENCFF778HQV.bam released s3://encode-public/2020/09/03/015c460d-0522-4a58-9583-c8d6b6981dd1/ENCFF778HQV.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001HUE bam bam alignments hg19 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUV/ 630470793 John Stamatoyannopoulos, UW db0dd73402806e1932dcf9289f623044 https://www.encodeproject.org/files/ENCFF001HUE/@@download/ENCFF001HUE.bam archived s3://encode-public/2011/06/25/9ffef704-65ca-4b43-8929-da9ea6213176/ENCFF001HUE.bam Lab custom hg19 archived low read depth, low read length ENCFF001HUH bigWig bigWig raw signal hg19 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 /files/ENCFF001HUE/ 120028972 John Stamatoyannopoulos, UW 8853c6528b861db17db4a1d20ead82df https://www.encodeproject.org/files/ENCFF001HUH/@@download/ENCFF001HUH.bigWig archived s3://encode-public/2011/06/25/b191a88d-3d02-47be-88d7-7455cd46823c/ENCFF001HUH.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HUV fastq fastq reads ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 single-ended 773676496 John Stamatoyannopoulos, UW a32a40d3445b0d09480d7127877d1cb5 https://www.encodeproject.org/files/ENCFF001HUV/@@download/ENCFF001HUV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/57562e5e-342a-49f5-bf55-d681bd47da40/ENCFF001HUV.fastq.gz low read depth, low read length ENCFF348UXF bam bam unfiltered alignments GRCh38 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HUV/ 926511036 ENCODE Processing Pipeline e4a790bf637a01136462dd7b792f7ab6 https://www.encodeproject.org/files/ENCFF348UXF/@@download/ENCFF348UXF.bam released s3://encode-public/2016/08/09/5eb83bef-b83f-44c9-99f1-3cce05fb325c/ENCFF348UXF.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF262HFO bam bam alignments GRCh38 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HUV/ 539313624 ENCODE Processing Pipeline 800bafec53d98395a4a3950347298753 https://www.encodeproject.org/files/ENCFF262HFO/@@download/ENCFF262HFO.bam released s3://encode-public/2016/08/09/9eeef0c8-7886-462d-881c-3dd6cd08341a/ENCFF262HFO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF661RVL bam bam unfiltered alignments hg19 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HUV/ 924809608 ENCODE Processing Pipeline c41f48d4188d802ef126b30584475aad https://www.encodeproject.org/files/ENCFF661RVL/@@download/ENCFF661RVL.bam released s3://encode-public/2016/11/13/16ef05e2-3e8b-41d3-b006-29b372ca855c/ENCFF661RVL.bam ENCODE3 hg19 archived low read depth, low read length ENCFF615RFN bam bam alignments hg19 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HUV/ 539582278 ENCODE Processing Pipeline a5aa456fe44694197e74f00e77ec9bdf https://www.encodeproject.org/files/ENCFF615RFN/@@download/ENCFF615RFN.bam released s3://encode-public/2016/11/13/384a694d-3dae-4b1f-b5f4-2d9426424d9f/ENCFF615RFN.bam ENCODE3 hg19 archived low read depth, low read length ENCFF883CPJ bam bam unfiltered alignments GRCh38 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUV/, /files/ENCFF110MCL/ 898332419 ENCODE Processing Pipeline 703817c6c64fe3c7cfa0d42a3b74780d https://www.encodeproject.org/files/ENCFF883CPJ/@@download/ENCFF883CPJ.bam released s3://encode-public/2020/09/03/d0038dc9-1778-47c5-b20c-4d80ce3262cb/ENCFF883CPJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF134CHO bam bam alignments GRCh38 ENCSR000DWK Control ChIP-seq /human-donors/ENCDO265AAA/ CL:0001054 CD14-positive monocyte primary cell Homo sapiens DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HUV/, /files/ENCFF110MCL/ 610373174 ENCODE Processing Pipeline 0474a29c1ef991c9262ac4bd3d15a152 https://www.encodeproject.org/files/ENCFF134CHO/@@download/ENCFF134CHO.bam released s3://encode-public/2020/09/03/2227113d-c811-40a1-adfd-5d8923a93afb/ENCFF134CHO.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000WIU bam bam alignments hg19 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIZ/ 187471280 Michael Snyder, Stanford 79e8d4a28309495b6796dd6f3eee7d71 https://www.encodeproject.org/files/ENCFF000WIU/@@download/ENCFF000WIU.bam archived s3://encode-public/2012/07/01/fc8c204f-7d0f-4500-991e-d1c46afab142/ENCFF000WIU.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WIV bam bam alignments hg19 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WJL/ 295557757 Michael Snyder, Stanford ee2679a6a3f1968d12a6fa96e8ae2ef0 https://www.encodeproject.org/files/ENCFF000WIV/@@download/ENCFF000WIV.bam archived s3://encode-public/2012/07/01/5977cac7-c8e6-4864-8162-27c6b225abe3/ENCFF000WIV.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WIY bigWig bigWig signal hg19 ENCSR000EAL Control ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 308751634 Michael Snyder, Stanford e68d5573b6627c4fe47ab4e9f686977a https://www.encodeproject.org/files/ENCFF000WIY/@@download/ENCFF000WIY.bigWig archived s3://encode-public/2012/07/01/8f8a14b3-f28a-466c-9155-400239cbf337/ENCFF000WIY.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WIZ fastq fastq reads ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 146599967 Michael Snyder, Stanford ed89902c8842842aafc6e37ca70f5970 https://www.encodeproject.org/files/ENCFF000WIZ/@@download/ENCFF000WIZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/f080c0c1-76fe-4526-a1b7-1446be615054/ENCFF000WIZ.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF000WJL fastq fastq reads ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 236079975 Michael Snyder, Stanford b76b5ccf83eaf96dcd5693b6391e2863 https://www.encodeproject.org/files/ENCFF000WJL/@@download/ENCFF000WJL.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/ff50362c-b404-479e-93df-49034eb72e75/ENCFF000WJL.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF930GWD bam bam unfiltered alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WJL/ 296903118 ENCODE Processing Pipeline 1f2ca363987fc9a5ef2b5b47490947f0 https://www.encodeproject.org/files/ENCFF930GWD/@@download/ENCFF930GWD.bam released s3://encode-public/2016/10/26/fe43c2be-bcb2-4840-994a-574db1713728/ENCFF930GWD.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF800XXL bam bam unfiltered alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIZ/, /files/ENCFF643CGH/ 188327362 ENCODE Processing Pipeline fa42e8f7a3b24f47fc6b8f42b920292b https://www.encodeproject.org/files/ENCFF800XXL/@@download/ENCFF800XXL.bam released s3://encode-public/2016/10/26/1183abf4-704f-41f0-90de-03a9a5794c07/ENCFF800XXL.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF580BOV bam bam alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WJL/ 187886456 ENCODE Processing Pipeline f4b5e03abd6d900eb20b6b4380826c1c https://www.encodeproject.org/files/ENCFF580BOV/@@download/ENCFF580BOV.bam released s3://encode-public/2016/10/26/b0aa3b91-ec71-443f-8d8b-0fcd7d3a4612/ENCFF580BOV.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF602HED bam bam alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIZ/, /files/ENCFF643CGH/ 119128966 ENCODE Processing Pipeline 3b285e1a8317b2a32693b103cdbaeef6 https://www.encodeproject.org/files/ENCFF602HED/@@download/ENCFF602HED.bam released s3://encode-public/2016/10/26/63e60ea4-bfe4-46bc-a9fa-2028ec84e7eb/ENCFF602HED.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF499SGK bam bam unfiltered alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIZ/, /files/ENCFF110MCL/ 178843446 ENCODE Processing Pipeline 91ddac09e349f03a4a1b8224edc01e13 https://www.encodeproject.org/files/ENCFF499SGK/@@download/ENCFF499SGK.bam released s3://encode-public/2020/10/27/2dc9ee8e-b9d9-4b7a-bd09-6bd212ea1493/ENCFF499SGK.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF706EES bam bam alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WJL/, /files/ENCFF110MCL/ 194442972 ENCODE Processing Pipeline a85ab087b9fae0f153cbdb7470373b69 https://www.encodeproject.org/files/ENCFF706EES/@@download/ENCFF706EES.bam released s3://encode-public/2020/10/27/dd8f023f-3447-4858-8434-bbefeb1dcace/ENCFF706EES.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF871GTQ bam bam unfiltered alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WJL/, /files/ENCFF110MCL/ 282022771 ENCODE Processing Pipeline 8b5ba1be4dadd3953bf701a87f94dcae https://www.encodeproject.org/files/ENCFF871GTQ/@@download/ENCFF871GTQ.bam released s3://encode-public/2020/10/27/9ee41c33-d1e4-4406-bce0-2632ee593952/ENCFF871GTQ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF681OMZ bam bam alignments GRCh38 ENCSR000EAL Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WIZ/, /files/ENCFF110MCL/ 124380408 ENCODE Processing Pipeline b85dc743f1a6a546031c9a830c3f5f4c https://www.encodeproject.org/files/ENCFF681OMZ/@@download/ENCFF681OMZ.bam released s3://encode-public/2020/10/27/3438a132-415a-41e9-afb7-462a7b16dcd3/ENCFF681OMZ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF001MOQ bam bam alignments mm9 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF001MOR/ 783346362 Ross Hardison, PennState 431d25bc470bee23b740fab6c7c5257a https://www.encodeproject.org/files/ENCFF001MOQ/@@download/ENCFF001MOQ.bam archived s3://encode-public/2011/11/05/55d995c4-6bdb-4689-8b46-baa5eb3e14ca/ENCFF001MOQ.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MOR fastq fastq reads ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 single-ended 606336259 Ross Hardison, PennState 774c94cba75902ce6e32027f4a736dcf https://www.encodeproject.org/files/ENCFF001MOR/@@download/ENCFF001MOR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2011/11/05/a3ea0c6d-687d-4165-806a-e94f2aa1f0dd/ENCFF001MOR.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MOS bigWig bigWig signal mm9 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 1192810044 Ross Hardison, PennState 56355774e5520eacfb730acfa100445e https://www.encodeproject.org/files/ENCFF001MOS/@@download/ENCFF001MOS.bigWig archived s3://encode-public/2011/11/05/97b1f607-35f2-4153-9c64-f5f17a2bd0d1/ENCFF001MOS.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MOT bam bam alignments mm9 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 55 /files/ENCFF001MPG/ 7565161482 Ross Hardison, PennState 5afc0b6ac724f7d6bcc2bc7480bc9634 https://www.encodeproject.org/files/ENCFF001MOT/@@download/ENCFF001MOT.bam archived s3://encode-public/2011/11/05/2e92f2f6-5676-4f7c-9f49-76b24e6142ea/ENCFF001MOT.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MOU bigWig bigWig signal mm9 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 6046445928 Ross Hardison, PennState dfdcb2450a49535e7c6df018b3d85dd6 https://www.encodeproject.org/files/ENCFF001MOU/@@download/ENCFF001MOU.bigWig archived s3://encode-public/2011/11/05/35af45c5-90b7-40f6-9446-e5599033fe03/ENCFF001MOU.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MOV bigWig bigWig signal mm9 ENCSR000DJA Control ChIP-seq EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 6224028434 Ross Hardison, PennState e3f604047f4fec7ceed6f865235a7610 https://www.encodeproject.org/files/ENCFF001MOV/@@download/ENCFF001MOV.bigWig archived s3://encode-public/2011/11/05/40154743-af6e-4d56-8a12-35cfddc4956d/ENCFF001MOV.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MPG fastq fastq reads ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 55 single-ended 6446746079 Ross Hardison, PennState 688d0a30fffd60d319b2c4e8e21d1035 https://www.encodeproject.org/files/ENCFF001MPG/@@download/ENCFF001MPG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/f514f069-5cad-40d3-b1b4-5917839e6049/ENCFF001MPG.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF440APF bam bam unfiltered alignments mm10-minimal ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 55 /files/ENCFF806TVZ/, /files/ENCFF001MPG/ 7786305193 J. Michael Cherry, Stanford 0cef76b962275732f687a070eb032d4d https://www.encodeproject.org/files/ENCFF440APF/@@download/ENCFF440APF.bam archived s3://encode-public/2015/02/10/44cbe077-0507-47c3-a427-c418889276b7/ENCFF440APF.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF671ICO bam bam unfiltered alignments mm10-minimal ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001MOR/ 822511500 J. Michael Cherry, Stanford ea79d6872a0ee9ab380fd48cd7fcab01 https://www.encodeproject.org/files/ENCFF671ICO/@@download/ENCFF671ICO.bam archived s3://encode-public/2015/02/10/486c69c1-883b-46e0-becd-c9aad2017531/ENCFF671ICO.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF246RUC bam bam alignments mm10-minimal ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 55 /files/ENCFF806TVZ/, /files/ENCFF001MPG/ 5848587254 J. Michael Cherry, Stanford f1332e38176891e1b1ca4eacb0480096 https://www.encodeproject.org/files/ENCFF246RUC/@@download/ENCFF246RUC.bam archived s3://encode-public/2015/05/23/e212bdfe-6057-403d-8174-7220469fa094/ENCFF246RUC.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF186AGW bam bam alignments mm10-minimal ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001MOR/ 572272870 J. Michael Cherry, Stanford f6de37c1a007c88ce9aaafd47a744398 https://www.encodeproject.org/files/ENCFF186AGW/@@download/ENCFF186AGW.bam archived s3://encode-public/2015/05/23/27f33cf6-9bf2-4ddd-b6e5-ba50f845643d/ENCFF186AGW.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF089UFL bam bam alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MOR/ 572045016 ENCODE Processing Pipeline a338da54c9c8b2798ddce2a3f502e20d https://www.encodeproject.org/files/ENCFF089UFL/@@download/ENCFF089UFL.bam released s3://encode-public/2016/04/28/51c53e86-a009-4b0f-833a-bcabf43979f9/ENCFF089UFL.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF615NPF bam bam unfiltered alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MOR/ 823528327 ENCODE Processing Pipeline 816ba45726ad27a3526cd5b3a71e1ae4 https://www.encodeproject.org/files/ENCFF615NPF/@@download/ENCFF615NPF.bam released s3://encode-public/2016/07/06/838071be-67a2-4cb7-a11c-a0dda426db7f/ENCFF615NPF.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF692LBW bam bam unfiltered alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF001MPG/, /files/ENCFF309GLL/ 6108825983 ENCODE Processing Pipeline 69a6eaab72f756b4081e75a1e9639012 https://www.encodeproject.org/files/ENCFF692LBW/@@download/ENCFF692LBW.bam released s3://encode-public/2020/10/12/f44b5a3d-9030-4e54-a8d8-90f0e2591ffd/ENCFF692LBW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF290JQR bam bam unfiltered alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MPG/ 6189060571 ENCODE Processing Pipeline 7efc7c15f79c84cfcacab1ae089b4733 https://www.encodeproject.org/files/ENCFF290JQR/@@download/ENCFF290JQR.bam released s3://encode-public/2016/11/28/3995ab7e-c50b-49af-a94d-61279c44e36f/ENCFF290JQR.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF984QUA bam bam alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MPG/ 4424898092 ENCODE Processing Pipeline 5b45eca8de4e6302e8e599271e630f45 https://www.encodeproject.org/files/ENCFF984QUA/@@download/ENCFF984QUA.bam released s3://encode-public/2016/11/28/4789ef93-59e4-4b7b-9bb9-a754e149b837/ENCFF984QUA.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF135BMX bam bam unfiltered alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF001MOR/, /files/ENCFF309GLL/ 806067731 ENCODE Processing Pipeline 35f9c89cfc9a8d999340277b012bc33a https://www.encodeproject.org/files/ENCFF135BMX/@@download/ENCFF135BMX.bam released s3://encode-public/2020/10/12/61c36aff-f8d1-4986-b452-bc9dc9f9e646/ENCFF135BMX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF412UAC bam bam alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 1 1_1 36 /files/ENCFF001MOR/, /files/ENCFF309GLL/ 605368637 ENCODE Processing Pipeline ad91fb5891c609db5ecf7958d30b0452 https://www.encodeproject.org/files/ENCFF412UAC/@@download/ENCFF412UAC.bam released s3://encode-public/2020/10/12/60369413-35e1-4eae-84ee-f5ded039c1dc/ENCFF412UAC.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF443XJP bam bam alignments mm10 ENCSR000DJA Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002034 G1E cell line Mus musculus DNA 2012-04-30 ENCODE see document 2 2_1 36 /files/ENCFF001MPG/, /files/ENCFF309GLL/ 4699707189 ENCODE Processing Pipeline c76faad26a4626b1a7c0f82106b651c0 https://www.encodeproject.org/files/ENCFF443XJP/@@download/ENCFF443XJP.bam released s3://encode-public/2020/10/12/b962a2a9-6970-4738-96e5-9bc7ec73d080/ENCFF443XJP.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001HNF bam bam alignments hg19 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNS/ 694648333 John Stamatoyannopoulos, UW b98c396a6096dc8022f1d2cdddc17c53 https://www.encodeproject.org/files/ENCFF001HNF/@@download/ENCFF001HNF.bam archived s3://encode-public/2011/06/25/7ff2443a-499e-4463-9d69-d19e0832ebfd/ENCFF001HNF.bam Lab custom hg19 archived low read depth, low read length ENCFF001HNH bigWig bigWig raw signal hg19 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HNF/ 163920209 John Stamatoyannopoulos, UW aa29d18fe36c08181893e8186e6ef0ce https://www.encodeproject.org/files/ENCFF001HNH/@@download/ENCFF001HNH.bigWig archived s3://encode-public/2011/06/25/49f02344-6a49-4e4a-8e3a-8ac2a9134eff/ENCFF001HNH.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HNS fastq fastq reads ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 735338664 John Stamatoyannopoulos, UW 460da45fe036a7004a251a79bfd9d7c5 https://www.encodeproject.org/files/ENCFF001HNS/@@download/ENCFF001HNS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/3277d943-4e10-41b7-98d9-f4a9b0caa3c6/ENCFF001HNS.fastq.gz low read depth, low read length ENCFF909YLO bam bam unfiltered alignments GRCh38 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNS/, /files/ENCFF643CGH/ 909346824 ENCODE Processing Pipeline 69c8c1e4f670ccf9f6e981b3472c5d76 https://www.encodeproject.org/files/ENCFF909YLO/@@download/ENCFF909YLO.bam released s3://encode-public/2016/08/09/ee5398fd-9610-4e0b-b879-d9959cfa9041/ENCFF909YLO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF883FFC bam bam alignments GRCh38 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNS/, /files/ENCFF643CGH/ 637738657 ENCODE Processing Pipeline 8994beca2fab6905fe0bd2e0e35728f6 https://www.encodeproject.org/files/ENCFF883FFC/@@download/ENCFF883FFC.bam released s3://encode-public/2016/08/09/bb6f6b99-eae7-4610-a4f4-ff6e10a25c05/ENCFF883FFC.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF111FGZ bam bam alignments hg19 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNS/, /files/ENCFF807MUK/ 638042734 ENCODE Processing Pipeline 3f52725418537d8d2227cb38e4c2eb6c https://www.encodeproject.org/files/ENCFF111FGZ/@@download/ENCFF111FGZ.bam released s3://encode-public/2016/11/13/25b414eb-2abc-45e4-a8b1-d1a5b2551f2d/ENCFF111FGZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF780LIV bam bam unfiltered alignments hg19 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HNS/, /files/ENCFF807MUK/ 905008326 ENCODE Processing Pipeline f78f9b04c789ce70249adbd5817a204f https://www.encodeproject.org/files/ENCFF780LIV/@@download/ENCFF780LIV.bam released s3://encode-public/2016/11/13/08e9644f-249f-44ac-b646-82db2ede6580/ENCFF780LIV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF688AAE bam bam alignments GRCh38 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HNS/ 700503639 ENCODE Processing Pipeline ce7da698cf14d071a7725297d29078c5 https://www.encodeproject.org/files/ENCFF688AAE/@@download/ENCFF688AAE.bam released s3://encode-public/2020/09/03/51fba5b3-d78a-42fe-8506-f9309164f4a8/ENCFF688AAE.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF168HFB bam bam unfiltered alignments GRCh38 ENCSR000DTX Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HNS/ 889505291 ENCODE Processing Pipeline 891d8b8b29f9371cf3e512ee231af6e9 https://www.encodeproject.org/files/ENCFF168HFB/@@download/ENCFF168HFB.bam released s3://encode-public/2020/09/03/a42ac967-6762-44aa-b7e3-da03a7ff0bf5/ENCFF168HFB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001GZG bam bam alignments hg19 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZT/ 1081963716 John Stamatoyannopoulos, UW 8ffd9d6bbee62c96341f5b8c2dc6675a https://www.encodeproject.org/files/ENCFF001GZG/@@download/ENCFF001GZG.bam archived s3://encode-public/2011/06/25/43b6cde4-a490-4c2f-a2f8-4499520954a4/ENCFF001GZG.bam Lab custom hg19 archived low read length ENCFF001GZH bigWig bigWig raw signal hg19 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001GZG/ 199006365 John Stamatoyannopoulos, UW 750a3340fa1fbcf803d491d685ae442b https://www.encodeproject.org/files/ENCFF001GZH/@@download/ENCFF001GZH.bigWig archived s3://encode-public/2011/06/25/c2ecb113-c0bc-4953-815e-d7c627fd2ce3/ENCFF001GZH.bigWig Lab custom hg19 archived low read length ENCFF001GZT fastq fastq reads ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 1121812019 John Stamatoyannopoulos, UW 962197cc39f8f2663e19516990555092 https://www.encodeproject.org/files/ENCFF001GZT/@@download/ENCFF001GZT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/170c52b7-177d-4d82-b0f9-fa7fa64d6f6b/ENCFF001GZT.fastq.gz low read length ENCFF345GLS bam bam unfiltered alignments GRCh38 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZT/, /files/ENCFF643CGH/ 1338584978 ENCODE Processing Pipeline ce55990b92c5d5da1ee6439b11602dee https://www.encodeproject.org/files/ENCFF345GLS/@@download/ENCFF345GLS.bam released s3://encode-public/2016/08/09/d6dc8434-1cd0-4f39-a6d6-8190789becf4/ENCFF345GLS.bam ENCODE3 GRCh38 archived low read length ENCFF540GSY bam bam alignments GRCh38 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZT/, /files/ENCFF643CGH/ 997877233 ENCODE Processing Pipeline 9a4f14ee8a28e00ba9d5c051eb8445b7 https://www.encodeproject.org/files/ENCFF540GSY/@@download/ENCFF540GSY.bam released s3://encode-public/2016/08/09/a8fae4bd-4f1d-4594-84b6-c089150ca66b/ENCFF540GSY.bam ENCODE3 GRCh38 archived low read length ENCFF165MAH bam bam unfiltered alignments hg19 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZT/, /files/ENCFF807MUK/ 1331967142 ENCODE Processing Pipeline 35fb65600de3600df95f05c8952aa803 https://www.encodeproject.org/files/ENCFF165MAH/@@download/ENCFF165MAH.bam released s3://encode-public/2016/11/13/3814160a-8df6-46d0-9508-92c7fa48b815/ENCFF165MAH.bam ENCODE3 hg19 archived low read length ENCFF054LVG bam bam alignments hg19 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZT/, /files/ENCFF807MUK/ 997957037 ENCODE Processing Pipeline 3ae851e302aeb2a5f0c85d7d2ea567e4 https://www.encodeproject.org/files/ENCFF054LVG/@@download/ENCFF054LVG.bam released s3://encode-public/2016/11/13/8514ecbe-6734-4a50-95bd-37019e42a7a4/ENCFF054LVG.bam ENCODE3 hg19 archived low read length ENCFF478VQG bam bam unfiltered alignments GRCh38 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZT/, /files/ENCFF110MCL/ 1309336830 ENCODE Processing Pipeline f9f139cf982a29d17c5c812a9072103d https://www.encodeproject.org/files/ENCFF478VQG/@@download/ENCFF478VQG.bam released s3://encode-public/2020/09/03/28cfd936-0fc1-46da-873e-bc9d4062f0f9/ENCFF478VQG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF402AUC bam bam alignments GRCh38 ENCSR000DQC Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001GZT/, /files/ENCFF110MCL/ 1079165347 ENCODE Processing Pipeline 017fe01266b4ce7ecd042925aaa428e9 https://www.encodeproject.org/files/ENCFF402AUC/@@download/ENCFF402AUC.bam released s3://encode-public/2020/09/03/f91baf9f-eb0a-4925-a225-9bcc094989c3/ENCFF402AUC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000YQE bam bam alignments hg19 ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YOV/ 1198715119 Sherman Weissman, Yale f8e6bdf793f8a32007cc0e7f1277e0ba https://www.encodeproject.org/files/ENCFF000YQE/@@download/ENCFF000YQE.bam archived s3://encode-public/2010/12/02/b94aea88-a157-4a25-a6d4-d3f87cbcdd0c/ENCFF000YQE.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000YOV fastq fastq reads ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 single-ended 890108129 Sherman Weissman, Yale 9a1df3d141cc87f3b1c5be60ecd74fbd https://www.encodeproject.org/files/ENCFF000YOV/@@download/ENCFF000YOV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/b71c82ac-c4bc-42ab-8f53-3d5f1968f4d7/ENCFF000YOV.fastq.gz low read depth insufficient read length ENCFF000YQD bigWig bigWig signal hg19 ENCSR000FAB Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 383589787 Sherman Weissman, Yale e9faff47abda33d343f595f65d503c9f https://www.encodeproject.org/files/ENCFF000YQD/@@download/ENCFF000YQD.bigWig archived s3://encode-public/2010/12/02/c4103561-50cf-4392-93a5-bb417d8686b8/ENCFF000YQD.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF037IQU bam bam unfiltered alignments hg19 ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000YOV/ 1132458076 ENCODE Processing Pipeline bf3008bda0deb8f76cb5d829a1fab497 https://www.encodeproject.org/files/ENCFF037IQU/@@download/ENCFF037IQU.bam released s3://encode-public/2016/10/15/44e6f224-789b-48aa-9f8a-7dd54c80198f/ENCFF037IQU.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF650MOB bam bam alignments hg19 ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000YOV/ 579861694 ENCODE Processing Pipeline 5360ae54c0ff6ce24f75f4c601bb059f https://www.encodeproject.org/files/ENCFF650MOB/@@download/ENCFF650MOB.bam released s3://encode-public/2016/10/15/7437eb4b-2f15-4bd2-8a2a-b3cc51facd53/ENCFF650MOB.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF654HJW bam bam unfiltered alignments GRCh38 ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000YOV/ 1135608014 ENCODE Processing Pipeline 69cd300aa370577381e3b989c79f1e7a https://www.encodeproject.org/files/ENCFF654HJW/@@download/ENCFF654HJW.bam released s3://encode-public/2016/12/13/809d3aca-fd33-427d-8988-84b007f160aa/ENCFF654HJW.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF767FSP bam bam alignments GRCh38 ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000YOV/ 579116988 ENCODE Processing Pipeline 443d7ab071cd68ff4ee84870b3ebc176 https://www.encodeproject.org/files/ENCFF767FSP/@@download/ENCFF767FSP.bam released s3://encode-public/2016/12/13/1cab9c91-a0de-4b3b-a56c-021db8813e67/ENCFF767FSP.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF317GKX bam bam unfiltered alignments GRCh38 ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YOV/, /files/ENCFF110MCL/ 1065302574 ENCODE Processing Pipeline ce86cc2ae4f589e896ae15c45f3d73e7 https://www.encodeproject.org/files/ENCFF317GKX/@@download/ENCFF317GKX.bam released s3://encode-public/2020/10/27/a0eb609b-812b-40ee-b670-741e3970cf89/ENCFF317GKX.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF650ORA bam bam alignments GRCh38 ENCSR000FAB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YOV/, /files/ENCFF110MCL/ 520108694 ENCODE Processing Pipeline 8bd921927a53ffd3614b233bd2ffb6f0 https://www.encodeproject.org/files/ENCFF650ORA/@@download/ENCFF650ORA.bam released s3://encode-public/2020/10/27/cf5bb0d2-0812-4556-9061-9629e67632c9/ENCFF650ORA.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF001MQX bam bam alignments mm9 ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRH/ 1497986733 Ross Hardison, PennState d4e26305fc56f2e44ee82dc4cc7f3c08 https://www.encodeproject.org/files/ENCFF001MQX/@@download/ENCFF001MQX.bam archived s3://encode-public/2011/11/05/3fc297b1-3e8b-445f-a661-e15a94054805/ENCFF001MQX.bam Lab custom mm9 archived low read length ENCFF001MQY bigWig bigWig signal mm9 ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 2158456987 Ross Hardison, PennState db1d6f6f0b4c9e74bcf9d04b4c0e1283 https://www.encodeproject.org/files/ENCFF001MQY/@@download/ENCFF001MQY.bigWig archived s3://encode-public/2011/11/05/e1e2a3ff-fce9-4881-81ba-cfbc9f9e7260/ENCFF001MQY.bigWig Lab custom mm9 archived low read length ENCFF001MRH fastq fastq reads ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 single-ended 1224171602 Ross Hardison, PennState 60982adb7cdab06e51329617e0e54f77 https://www.encodeproject.org/files/ENCFF001MRH/@@download/ENCFF001MRH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/0fbbb71f-04e9-4f4f-9736-c9283b02c1b9/ENCFF001MRH.fastq.gz low read length ENCFF916GXH bam bam unfiltered alignments mm10-minimal ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRH/ 1574653610 J. Michael Cherry, Stanford b8c7edbbacfa5104ae5d9aa7ed7dbd89 https://www.encodeproject.org/files/ENCFF916GXH/@@download/ENCFF916GXH.bam archived s3://encode-public/2015/02/04/da68a142-8e41-486c-8d54-d2d92e6277fc/ENCFF916GXH.bam ENCODE3 mm10-minimal archived low read length ENCFF736DEZ bam bam alignments mm10-minimal ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRH/ 1129406895 J. Michael Cherry, Stanford 082428d15443b99a8746bde25be73381 https://www.encodeproject.org/files/ENCFF736DEZ/@@download/ENCFF736DEZ.bam archived s3://encode-public/2015/05/23/88bf5f4f-5d71-40ec-aae0-c02cc4dc94ef/ENCFF736DEZ.bam ENCODE3 mm10-minimal archived low read length ENCFF857ZNT bam bam unfiltered alignments mm10 ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MRH/ 1441512402 ENCODE Processing Pipeline 96ac0e54625fd1eb6c7e0cd58a541de6 https://www.encodeproject.org/files/ENCFF857ZNT/@@download/ENCFF857ZNT.bam released s3://encode-public/2016/11/28/598fc9de-dc3d-4bd4-a89c-648d090c6c81/ENCFF857ZNT.bam ENCODE3 mm10 archived low read length ENCFF582HXG bam bam alignments mm10 ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MRH/ 1021536128 ENCODE Processing Pipeline 0d603037c8e2e49d4bdd9f54fe911d69 https://www.encodeproject.org/files/ENCFF582HXG/@@download/ENCFF582HXG.bam released s3://encode-public/2016/11/28/8aa02d98-4820-4a3b-8374-9b9528fa1490/ENCFF582HXG.bam ENCODE3 mm10 archived low read length ENCFF635WFV bam bam alignments mm10 ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRH/, /files/ENCFF309GLL/ 1144363518 ENCODE Processing Pipeline a1d64ea4fd33062720986908f4625d2c https://www.encodeproject.org/files/ENCFF635WFV/@@download/ENCFF635WFV.bam released s3://encode-public/2020/11/06/2089a140-a67f-4567-9321-20c1f626a2e7/ENCFF635WFV.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF558YUR bam bam unfiltered alignments mm10 ENCSR000DGS Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 3 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRH/, /files/ENCFF309GLL/ 1568266329 ENCODE Processing Pipeline 930818ad46577151295fd28685c918f5 https://www.encodeproject.org/files/ENCFF558YUR/@@download/ENCFF558YUR.bam released s3://encode-public/2020/11/06/a7e8cd90-b83c-4bd5-ae74-b2ee4c7855e7/ENCFF558YUR.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF001RVO fastq fastq reads ENCSR000FCA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 single-ended 3675742701 Richard Myers, HAIB 375b8b8df6bbc351cba1d8220c24e123 SRA:SRR5331584 https://www.encodeproject.org/files/ENCFF001RVO/@@download/ENCFF001RVO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2013/11/01/085d7212-42d7-42ee-a788-7fa36e64a823/ENCFF001RVO.fastq.gz ENCFF061QOJ bam bam alignments hg19 ENCSR000FCA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF001RVO/ 2665396245 ENCODE Processing Pipeline 36679cc0ddaa62fc351893e371cc4b10 https://www.encodeproject.org/files/ENCFF061QOJ/@@download/ENCFF061QOJ.bam released s3://encode-public/2015/10/28/7dc3494e-8b69-4fc6-a6a2-f0c9945fdfcb/ENCFF061QOJ.bam ENCODE3 hg19 archived ENCFF929JAP bam bam unfiltered alignments GRCh38 ENCSR000FCA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF001RVO/ 3813067733 ENCODE Processing Pipeline 278e555c7e315f8e056e80f75f82858a https://www.encodeproject.org/files/ENCFF929JAP/@@download/ENCFF929JAP.bam released s3://encode-public/2016/05/06/60913123-8ec0-43c9-b517-96d865c8033d/ENCFF929JAP.bam ENCODE3 GRCh38 archived ENCFF332SVJ bam bam alignments GRCh38 ENCSR000FCA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF001RVO/ 2665277270 ENCODE Processing Pipeline c8991fa08236eda030b8530c70441caf https://www.encodeproject.org/files/ENCFF332SVJ/@@download/ENCFF332SVJ.bam released s3://encode-public/2016/05/06/ee26a04a-eb51-4db5-9292-be49dc8cb7b5/ENCFF332SVJ.bam ENCODE3 GRCh38 archived ENCFF763ZEC bam bam unfiltered alignments hg19 ENCSR000FCA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF001RVO/ 3803026380 ENCODE Processing Pipeline 6d98235631d36edd0a5859c61c6d834e https://www.encodeproject.org/files/ENCFF763ZEC/@@download/ENCFF763ZEC.bam released s3://encode-public/2016/09/01/5dbc7ebd-7300-4a9a-a01a-39c9885a8b0f/ENCFF763ZEC.bam ENCODE3 hg19 archived ENCFF555KYM bam bam unfiltered alignments GRCh38 ENCSR000FCA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF001RVO/ 3822407328 ENCODE Processing Pipeline 6e4443ce6bb502483ce9c3c8993d90d9 https://www.encodeproject.org/files/ENCFF555KYM/@@download/ENCFF555KYM.bam released s3://encode-public/2020/05/21/53f51bfa-5fd6-4e35-af4e-852ba1235699/ENCFF555KYM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF318XIW bam bam alignments GRCh38 ENCSR000FCA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE sonication (generic) 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF001RVO/ 2756126379 ENCODE Processing Pipeline 0a119a8e971971b3e4eaad2d5718a775 https://www.encodeproject.org/files/ENCFF318XIW/@@download/ENCFF318XIW.bam released s3://encode-public/2020/05/21/6774c42d-ea95-4d37-afb4-00acb3d665fc/ENCFF318XIW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF002AQQ fastq fastq reads ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1696888411 Bing Ren, UCSD e0ddf062aa20dce21650e43731d1f695 SRA:SRR3652016 https://www.encodeproject.org/files/ENCFF002AQQ/@@download/ENCFF002AQQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/03/15/bab3228a-723d-4582-80f3-aa8657b00063/ENCFF002AQQ.fastq.gz ENCFF002AQR fastq fastq reads ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2269204447 Bing Ren, UCSD 488504d24e1be92b548c3fae40b4e2fe SRA:SRR3652015 https://www.encodeproject.org/files/ENCFF002AQR/@@download/ENCFF002AQR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/d23e3408-9229-43c1-a6c2-6cbae669b4d5/ENCFF002AQR.fastq.gz ENCFF311SID bam bam unfiltered alignments mm10-minimal ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQQ/ 1931245491 ENCODE Processing Pipeline 9da6fb59f7d917a761ca6eb718835606 https://www.encodeproject.org/files/ENCFF311SID/@@download/ENCFF311SID.bam archived s3://encode-public/2015/02/09/1110bf74-dac7-4f05-8a1a-39e33218caee/ENCFF311SID.bam ENCFF467QZI bam bam unfiltered alignments mm10-minimal ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQR/, /files/ENCFF806TVZ/ 2493695196 ENCODE Processing Pipeline 9ebfdf3d03c88218346a1921e56ba279 https://www.encodeproject.org/files/ENCFF467QZI/@@download/ENCFF467QZI.bam archived s3://encode-public/2015/02/09/0c983893-861f-4142-acc7-e4177352f04c/ENCFF467QZI.bam ENCFF148UUT bam bam alignments mm10-minimal ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQR/, /files/ENCFF806TVZ/ 1838536090 ENCODE Processing Pipeline cc69b8ddc9c486ef93d454f050b472d5 https://www.encodeproject.org/files/ENCFF148UUT/@@download/ENCFF148UUT.bam archived s3://encode-public/2015/05/23/153951e5-a7c1-4915-af00-4e6688102b6c/ENCFF148UUT.bam ENCFF791KJV bam bam alignments mm10-minimal ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQQ/ 1330327786 ENCODE Processing Pipeline 17ac2239bbc9d1ba1169515b4f2eff4d https://www.encodeproject.org/files/ENCFF791KJV/@@download/ENCFF791KJV.bam archived s3://encode-public/2015/05/23/ceec0fa7-b455-44cc-aec4-2f5eccc7d7eb/ENCFF791KJV.bam ENCFF392VYN bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQQ/ 1933562963 ENCODE Processing Pipeline 618253be7f8b170eea0aed6a37ee5aab https://www.encodeproject.org/files/ENCFF392VYN/@@download/ENCFF392VYN.bam released s3://encode-public/2016/05/20/eec331e6-79da-4aac-96f9-6c5ec1c8c821/ENCFF392VYN.bam ENCODE3 mm10 archived ENCFF318VVU bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQR/ 2495776093 ENCODE Processing Pipeline fb7e050a5adacdd92ccc52c29fe7bba0 https://www.encodeproject.org/files/ENCFF318VVU/@@download/ENCFF318VVU.bam released s3://encode-public/2016/05/20/d48c5bcd-15ce-49da-a129-65359cae3b55/ENCFF318VVU.bam ENCODE3 mm10 archived ENCFF702TNM bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQQ/ 1329948211 ENCODE Processing Pipeline c3a22d37471027bfd54cf817b41cc6d9 https://www.encodeproject.org/files/ENCFF702TNM/@@download/ENCFF702TNM.bam released s3://encode-public/2016/05/20/8761c31e-29e7-4e59-bdf7-efaf0cab3b65/ENCFF702TNM.bam ENCODE3 mm10 archived ENCFF453URD bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQR/ 1838171816 ENCODE Processing Pipeline e5aa6afd0884ef4e93422cb1f2f16aff https://www.encodeproject.org/files/ENCFF453URD/@@download/ENCFF453URD.bam released s3://encode-public/2016/05/20/29f4e6b0-d2ab-420c-aa44-4ed25dab2c77/ENCFF453URD.bam ENCODE3 mm10 archived ENCFF893UNO bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQQ/ 1576824431 ENCODE Processing Pipeline cbaec3c8916f926ea48c29228e83bb3f https://www.encodeproject.org/files/ENCFF893UNO/@@download/ENCFF893UNO.bam released s3://encode-public/2016/10/03/91c678dc-1b50-4fc9-a9b2-3a991fb5d71e/ENCFF893UNO.bam ENCODE3 mm10 archived ENCFF738XGE bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQR/ 2050728015 ENCODE Processing Pipeline 67ff1b64c7cc65b9cec588820725bd89 https://www.encodeproject.org/files/ENCFF738XGE/@@download/ENCFF738XGE.bam released s3://encode-public/2016/10/03/985aee5c-abd5-4ca4-a528-485a62ad5b1a/ENCFF738XGE.bam ENCODE3 mm10 archived ENCFF955BDA bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQR/ 1414084817 ENCODE Processing Pipeline b311686c20c1b770c8d796acf2cda44c https://www.encodeproject.org/files/ENCFF955BDA/@@download/ENCFF955BDA.bam released s3://encode-public/2016/10/03/679ea58d-0c45-4490-ae9c-d326b5539622/ENCFF955BDA.bam ENCODE3 mm10 archived ENCFF419KAT bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQQ/ 1019724251 ENCODE Processing Pipeline c80e213c1156467d46749ad2f2acce2a https://www.encodeproject.org/files/ENCFF419KAT/@@download/ENCFF419KAT.bam released s3://encode-public/2016/10/03/3f3b230e-d2dd-49ee-8084-c979f6629843/ENCFF419KAT.bam ENCODE3 mm10 archived ENCFF392VJJ bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQQ/ 1903938863 ENCODE Processing Pipeline c135277102b76e61b33573fed998941d https://www.encodeproject.org/files/ENCFF392VJJ/@@download/ENCFF392VJJ.bam released s3://encode-public/2020/10/08/31c293b9-7e76-4b1e-9ebe-5376510ae701/ENCFF392VJJ.bam ENCODE4 v1.5.1 mm10 released ENCFF841RYO bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQQ/ 1539779687 ENCODE Processing Pipeline d65056e8d1416bce30f77648195340f4 https://www.encodeproject.org/files/ENCFF841RYO/@@download/ENCFF841RYO.bam released s3://encode-public/2020/10/10/e4174f06-1f52-4080-8318-defb57350b60/ENCFF841RYO.bam ENCODE4 v1.5.1 mm10 released ENCFF378PZI bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQR/, /files/ENCFF309GLL/ 2480307882 ENCODE Processing Pipeline 33756c16ce37a1820e89bd04f1c36bf7 https://www.encodeproject.org/files/ENCFF378PZI/@@download/ENCFF378PZI.bam released s3://encode-public/2020/10/08/67089868-0412-4f90-892d-10f98c18a28b/ENCFF378PZI.bam ENCODE4 v1.5.1 mm10 released ENCFF760BFB bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQQ/ 1388603727 ENCODE Processing Pipeline 8e0707bc3012d1fc5328c392183abac6 https://www.encodeproject.org/files/ENCFF760BFB/@@download/ENCFF760BFB.bam released s3://encode-public/2020/10/08/ded799f3-650c-40b0-bd06-bec6cf5707ab/ENCFF760BFB.bam ENCODE4 v1.5.1 mm10 released ENCFF695SNV bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQR/, /files/ENCFF309GLL/ 1889091190 ENCODE Processing Pipeline 9b8a6cbb9968a053489e9bc260cf1442 https://www.encodeproject.org/files/ENCFF695SNV/@@download/ENCFF695SNV.bam released s3://encode-public/2020/10/08/685159cf-582b-4d68-8ab6-8b1e6ab35215/ENCFF695SNV.bam ENCODE4 v1.5.1 mm10 released ENCFF098QXI bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQQ/ 1097849934 ENCODE Processing Pipeline c801fe02cecd9d3e917e45d503b86399 https://www.encodeproject.org/files/ENCFF098QXI/@@download/ENCFF098QXI.bam released s3://encode-public/2020/10/10/fcc07c8a-44c4-4f97-8dcd-049985e7ae43/ENCFF098QXI.bam ENCODE4 v1.5.1 mm10 released ENCFF728GZP bam bam unfiltered alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQR/, /files/ENCFF309GLL/ 2005669716 ENCODE Processing Pipeline bdc09910597e96b41f9ec6fe897a3ca0 https://www.encodeproject.org/files/ENCFF728GZP/@@download/ENCFF728GZP.bam released s3://encode-public/2020/10/10/613764af-2570-42db-a450-7ccce07dc255/ENCFF728GZP.bam ENCODE4 v1.5.1 mm10 released ENCFF690QPU bam bam alignments mm10 ENCSR398NCK Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQR/, /files/ENCFF309GLL/ 1515286959 ENCODE Processing Pipeline 14f8cfe7cd45d9897ef81814fe141343 https://www.encodeproject.org/files/ENCFF690QPU/@@download/ENCFF690QPU.bam released s3://encode-public/2020/10/10/de910fdf-a643-4085-85dd-98b93c9687b3/ENCFF690QPU.bam ENCODE4 v1.5.1 mm10 released ENCFF093YEG fastq fastq reads ENCSR537BJC Control ChIP-seq /fly-donors/ENCDO466PZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44254/'], '@type': ['Target', 'Item'], 'name': 'bab2-dmelanogaster', 'label': 'bab2', '@id': '/targets/bab2-dmelanogaster/', 'title': 'bab2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21532c2f-b935-4f02-a6f3-b80796782401', 'status': 'released'} dm3 3L 1098177 1196613 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 441815308 Kevin White, UChicago c98fb49d3e0bb905c05f7f03ca76084b https://www.encodeproject.org/files/ENCFF093YEG/@@download/ENCFF093YEG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/ecf7a983-1ecd-4d93-a31d-a881ce02c7dd/ENCFF093YEG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF092NFI bam bam alignments dm3 ENCSR537BJC Control ChIP-seq /fly-donors/ENCDO466PZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44254/'], '@type': ['Target', 'Item'], 'name': 'bab2-dmelanogaster', 'label': 'bab2', '@id': '/targets/bab2-dmelanogaster/', 'title': 'bab2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21532c2f-b935-4f02-a6f3-b80796782401', 'status': 'released'} dm3 3L 1098177 1196613 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF093YEG/ 541759058 Kevin White, UChicago d4c6f2ba9869b2a1607a24309b5800d8 https://www.encodeproject.org/files/ENCFF092NFI/@@download/ENCFF092NFI.bam released s3://encode-public/2015/08/05/2eda07a8-964c-4b60-b8b0-50515450184b/ENCFF092NFI.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF642GLW bigWig bigWig read-depth normalized signal dm3 ENCSR537BJC Control ChIP-seq /fly-donors/ENCDO466PZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44254/'], '@type': ['Target', 'Item'], 'name': 'bab2-dmelanogaster', 'label': 'bab2', '@id': '/targets/bab2-dmelanogaster/', 'title': 'bab2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21532c2f-b935-4f02-a6f3-b80796782401', 'status': 'released'} dm3 3L 1098177 1196613 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF092NFI/ 15230158 Kevin White, UChicago 5f472df85e4f016febb650a5c418273d https://www.encodeproject.org/files/ENCFF642GLW/@@download/ENCFF642GLW.bigWig released s3://encode-public/2015/10/07/f8fa5a11-243e-40a2-b7d2-0aefc7c10c1d/ENCFF642GLW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF388OLC bigWig bigWig signal of unique reads dm3 ENCSR537BJC Control ChIP-seq /fly-donors/ENCDO466PZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44254/'], '@type': ['Target', 'Item'], 'name': 'bab2-dmelanogaster', 'label': 'bab2', '@id': '/targets/bab2-dmelanogaster/', 'title': 'bab2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21532c2f-b935-4f02-a6f3-b80796782401', 'status': 'released'} dm3 3L 1098177 1196613 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF092NFI/ 15306324 Kevin White, UChicago 7f2414463b9876b2664f6f6c2026759c https://www.encodeproject.org/files/ENCFF388OLC/@@download/ENCFF388OLC.bigWig released s3://encode-public/2015/10/07/204c55aa-c783-4fff-a093-df26b5310405/ENCFF388OLC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF410LNZ bam bam alignments dm6 ENCSR537BJC Control ChIP-seq /fly-donors/ENCDO466PZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44254/'], '@type': ['Target', 'Item'], 'name': 'bab2-dmelanogaster', 'label': 'bab2', '@id': '/targets/bab2-dmelanogaster/', 'title': 'bab2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21532c2f-b935-4f02-a6f3-b80796782401', 'status': 'released'} dm3 3L 1098177 1196613 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF093YEG/ 539919229 Kevin White, UChicago 41fa68437baa20075cda32b472f55821 https://www.encodeproject.org/files/ENCFF410LNZ/@@download/ENCFF410LNZ.bam released s3://encode-public/2016/04/20/be997069-56fb-4d6a-8655-0725682d4b71/ENCFF410LNZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF552WUZ bigWig bigWig read-depth normalized signal dm6 ENCSR537BJC Control ChIP-seq /fly-donors/ENCDO466PZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44254/'], '@type': ['Target', 'Item'], 'name': 'bab2-dmelanogaster', 'label': 'bab2', '@id': '/targets/bab2-dmelanogaster/', 'title': 'bab2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21532c2f-b935-4f02-a6f3-b80796782401', 'status': 'released'} dm3 3L 1098177 1196613 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF410LNZ/ 17309729 Kevin White, UChicago 0d23b3d926480b2d1b09e409016aba5c https://www.encodeproject.org/files/ENCFF552WUZ/@@download/ENCFF552WUZ.bigWig released s3://encode-public/2016/06/20/11d6b14c-4148-41da-9a79-a22d60dd9bfe/ENCFF552WUZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF307FFH bigWig bigWig signal of unique reads dm6 ENCSR537BJC Control ChIP-seq /fly-donors/ENCDO466PZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44254/'], '@type': ['Target', 'Item'], 'name': 'bab2-dmelanogaster', 'label': 'bab2', '@id': '/targets/bab2-dmelanogaster/', 'title': 'bab2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21532c2f-b935-4f02-a6f3-b80796782401', 'status': 'released'} dm3 3L 1098177 1196613 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF410LNZ/ 17425043 Kevin White, UChicago 0625616b01aa31743e58a50630174550 https://www.encodeproject.org/files/ENCFF307FFH/@@download/ENCFF307FFH.bigWig released s3://encode-public/2016/06/20/42661409-0132-44b6-b807-c381ee55be90/ENCFF307FFH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000NFV bam bam alignments hg19 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000NGK/ 1426725487 Richard Myers, HAIB 0ce4a5356b5761cd30fb8d4a439d233a https://www.encodeproject.org/files/ENCFF000NFV/@@download/ENCFF000NFV.bam archived s3://encode-public/2012/01/23/089c4902-6914-4665-8409-f91e10b258a2/ENCFF000NFV.bam Lab custom hg19 archived low read depth ENCFF000NFW bam bam alignments hg19 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000NGN/ 2320619590 Richard Myers, HAIB 2345e595d51503399abb71c8df764cd0 https://www.encodeproject.org/files/ENCFF000NFW/@@download/ENCFF000NFW.bam archived s3://encode-public/2012/01/23/2f4d5c39-428e-43d0-aeac-20f1185549c2/ENCFF000NFW.bam Lab custom hg19 archived low read depth ENCFF000NFY bam bam alignments hg19 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF000NGM/ 1065833810 Richard Myers, HAIB 702926f71e42998a060ceb65817ff35e https://www.encodeproject.org/files/ENCFF000NFY/@@download/ENCFF000NFY.bam archived s3://encode-public/2012/01/23/8f438f4e-be90-4029-bdd8-c6f520617983/ENCFF000NFY.bam Lab custom hg19 archived low read depth ENCFF000NGG bigWig bigWig raw signal hg19 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 344470605 Richard Myers, HAIB 05178d5671db829b4abeb1e2a3fc3344 https://www.encodeproject.org/files/ENCFF000NGG/@@download/ENCFF000NGG.bigWig archived s3://encode-public/2012/01/23/1140752f-34ef-4143-a33e-5042160a33f8/ENCFF000NGG.bigWig Lab custom hg19 archived low read depth ENCFF000NGI bigWig bigWig raw signal hg19 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 138116623 Richard Myers, HAIB d880698ceaee45c91c25c854c028fb96 https://www.encodeproject.org/files/ENCFF000NGI/@@download/ENCFF000NGI.bigWig archived s3://encode-public/2012/01/23/f5abb243-13ce-46b2-bb06-aa956088ad25/ENCFF000NGI.bigWig Lab custom hg19 archived low read depth ENCFF000NGJ bigWig bigWig raw signal hg19 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 147430525 Richard Myers, HAIB ec5809055ab5fd321dd7939d8c53c0d8 https://www.encodeproject.org/files/ENCFF000NGJ/@@download/ENCFF000NGJ.bigWig archived s3://encode-public/2012/01/23/5e7850c4-af17-45cf-8ecd-809582f706e3/ENCFF000NGJ.bigWig Lab custom hg19 archived low read depth ENCFF000NGK fastq fastq reads ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 single-ended 1217554159 Richard Myers, HAIB 886c382955be3c3a69eba01c95eb7bd7 https://www.encodeproject.org/files/ENCFF000NGK/@@download/ENCFF000NGK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/33c40dd9-53ee-4226-8562-90a7f87d27ca/ENCFF000NGK.fastq.gz low read depth ENCFF000NGM fastq fastq reads ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 single-ended 869551303 Richard Myers, HAIB fffcbe56348e7e114aec97565a4165b5 https://www.encodeproject.org/files/ENCFF000NGM/@@download/ENCFF000NGM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/307c78bd-c9b5-40c9-9329-3079d6209c99/ENCFF000NGM.fastq.gz low read depth ENCFF000NGN fastq fastq reads ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 single-ended 2371175298 Richard Myers, HAIB 32eb4b728e43ce4cbe23cc5c9909e1ea https://www.encodeproject.org/files/ENCFF000NGN/@@download/ENCFF000NGN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/3f66259f-c210-40b1-b26b-6789c83035ea/ENCFF000NGN.fastq.gz low read depth ENCFF424GYC bam bam unfiltered alignments GRCh38 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF000NGM/, /files/ENCFF110MCL/ 1133390514 ENCODE Processing Pipeline 74e98a83e025879672a98327d70e1e1f https://www.encodeproject.org/files/ENCFF424GYC/@@download/ENCFF424GYC.bam released s3://encode-public/2020/10/27/77e875d4-fced-4cae-acc7-f5301d4d968b/ENCFF424GYC.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF607MCJ bam bam unfiltered alignments GRCh38 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000NGN/, /files/ENCFF110MCL/ 2508468069 ENCODE Processing Pipeline 7ea3f5b49ee4b2d038a03bc204698eaa https://www.encodeproject.org/files/ENCFF607MCJ/@@download/ENCFF607MCJ.bam released s3://encode-public/2020/10/27/32a78593-cd1a-451c-9ee1-acf3f6c1021f/ENCFF607MCJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF268OUT bam bam unfiltered alignments GRCh38 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000NGK/, /files/ENCFF110MCL/ 1570053326 ENCODE Processing Pipeline f247134125e036e3c1c203dc97854552 https://www.encodeproject.org/files/ENCFF268OUT/@@download/ENCFF268OUT.bam released s3://encode-public/2020/10/27/b3d1603d-bace-49bb-8705-31c22e9d5381/ENCFF268OUT.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF342QZE bam bam alignments GRCh38 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF000NGM/, /files/ENCFF110MCL/ 882896781 ENCODE Processing Pipeline ad7a7ec15fce788e2c1d8a0d2700f5ae https://www.encodeproject.org/files/ENCFF342QZE/@@download/ENCFF342QZE.bam released s3://encode-public/2020/10/27/4d059ddc-3868-4cde-abd1-85476c614ee7/ENCFF342QZE.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF149MYF bam bam alignments GRCh38 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000NGN/, /files/ENCFF110MCL/ 1895666594 ENCODE Processing Pipeline f73c0c567bee83f7524bb5fe2a4e4eb8 https://www.encodeproject.org/files/ENCFF149MYF/@@download/ENCFF149MYF.bam released s3://encode-public/2020/10/27/741d0375-9fa8-46fa-b323-7fe5ba28692d/ENCFF149MYF.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF634HDG bam bam alignments GRCh38 ENCSR000BVQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000NGK/, /files/ENCFF110MCL/ 1102902132 ENCODE Processing Pipeline 44d3fb1f234f8e4bca83055134aeaf99 https://www.encodeproject.org/files/ENCFF634HDG/@@download/ENCFF634HDG.bam released s3://encode-public/2020/10/27/172ed789-15b7-4329-937a-a3a923a1fa4a/ENCFF634HDG.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF001HBZ bam bam alignments hg19 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HCM/ 686672999 John Stamatoyannopoulos, UW 7b9f3dd8bc08f47c25197c191c145a5c https://www.encodeproject.org/files/ENCFF001HBZ/@@download/ENCFF001HBZ.bam archived s3://encode-public/2011/06/25/4c5e3976-bfdb-4ca5-88df-26ea28320ecd/ENCFF001HBZ.bam Lab custom hg19 archived low read depth, low read length ENCFF001HCA bigWig bigWig raw signal hg19 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HBZ/ 156993291 John Stamatoyannopoulos, UW 6d8981a4d0c977ff31c8f50ff26b3f05 https://www.encodeproject.org/files/ENCFF001HCA/@@download/ENCFF001HCA.bigWig archived s3://encode-public/2011/06/25/b77b3dca-c8a2-4c06-a9b5-e50ed8e122cb/ENCFF001HCA.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HCM fastq fastq reads ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 748564773 John Stamatoyannopoulos, UW f5bb45c5281e5703b0efa8914c21b150 https://www.encodeproject.org/files/ENCFF001HCM/@@download/ENCFF001HCM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/86e4a969-846d-46f4-a680-5bb721864c61/ENCFF001HCM.fastq.gz low read depth, low read length ENCFF749RTG bam bam unfiltered alignments GRCh38 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HCM/ 918957964 ENCODE Processing Pipeline 06a07f6a7b99d74b1c1d0f8aaa6abff1 https://www.encodeproject.org/files/ENCFF749RTG/@@download/ENCFF749RTG.bam released s3://encode-public/2016/08/09/61923b68-196a-476f-9f57-44cf9b715a83/ENCFF749RTG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF219TDW bam bam alignments GRCh38 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HCM/ 628033162 ENCODE Processing Pipeline 7f76c8112cc9d1d3173bb28417670efe https://www.encodeproject.org/files/ENCFF219TDW/@@download/ENCFF219TDW.bam released s3://encode-public/2016/08/09/8aae172b-131b-4458-9b12-c093c589e107/ENCFF219TDW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF675VCI bam bam unfiltered alignments hg19 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HCM/ 915118596 ENCODE Processing Pipeline b025f0beb94621a327b26a1cb163e156 https://www.encodeproject.org/files/ENCFF675VCI/@@download/ENCFF675VCI.bam released s3://encode-public/2016/08/23/4e52e6b5-e018-493a-bccd-eebca3256fb8/ENCFF675VCI.bam ENCODE3 hg19 archived low read depth, low read length ENCFF437XQZ bam bam alignments hg19 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HCM/ 623532179 ENCODE Processing Pipeline 94695790f0d9f3b6227444a6f18f4c95 https://www.encodeproject.org/files/ENCFF437XQZ/@@download/ENCFF437XQZ.bam released s3://encode-public/2016/08/23/e505e3ce-ad0d-49fe-8084-2ce80bba3d02/ENCFF437XQZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF733WTF bam bam unfiltered alignments GRCh38 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HCM/, /files/ENCFF110MCL/ 898031892 ENCODE Processing Pipeline 7fa29ec2f3a63d035498f109b60494a3 https://www.encodeproject.org/files/ENCFF733WTF/@@download/ENCFF733WTF.bam released s3://encode-public/2020/09/03/2f9c682f-bc43-48b0-a4b6-0ef59c9beb63/ENCFF733WTF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF607GTQ bam bam alignments GRCh38 ENCSR000DRA Control ChIP-seq /human-donors/ENCDO000ABO/ EFO:0005337 GM12864 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HCM/, /files/ENCFF110MCL/ 690234040 ENCODE Processing Pipeline d3c4b3bd36b016f929899fdaaca44426 https://www.encodeproject.org/files/ENCFF607GTQ/@@download/ENCFF607GTQ.bam released s3://encode-public/2020/09/03/7391b827-4976-407c-a922-22955a5206d2/ENCFF607GTQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF438EOO fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 single-ended 2015058104 Bradley Bernstein, Broad 047faa8082f614c493acfd35c1176724 SRA:SRR4235594 https://www.encodeproject.org/files/ENCFF438EOO/@@download/ENCFF438EOO.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2015/04/05/75295d78-397c-4887-b1f9-8eafc59721b1/ENCFF438EOO.fastq.gz ENCFF267LSQ fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_2 25 paired-ended 1 /files/ENCFF832PXL/ 571656188 Bradley Bernstein, Broad fd279293abc7450e84b29a73ec97826b SRA:SRR4235592 https://www.encodeproject.org/files/ENCFF267LSQ/@@download/ENCFF267LSQ.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2015/05/22/65722aa8-d648-43aa-a66a-a85e994b0638/ENCFF267LSQ.fastq.gz ENCFF487ALD fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 single-ended 2651527356 Bradley Bernstein, Broad 20bdd68ce007081de8261472e614e17f SRA:SRR4235593 https://www.encodeproject.org/files/ENCFF487ALD/@@download/ENCFF487ALD.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2015/05/22/cda4f565-7a81-4eb7-8864-5db065c51d44/ENCFF487ALD.fastq.gz ENCFF832PXL fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_2 25 paired-ended 2 /files/ENCFF267LSQ/ 577540313 Bradley Bernstein, Broad febbcd423e7d6b97b8bcc1deb59c0964 SRA:SRR4235592 https://www.encodeproject.org/files/ENCFF832PXL/@@download/ENCFF832PXL.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2015/05/22/268245c4-7a10-4b9c-8998-db63790a8600/ENCFF832PXL.fastq.gz ENCFF458ASE fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 paired-ended 1 /files/ENCFF443LZC/ 1581776486 Bradley Bernstein, Broad 1b16a3128b654aa54db8b0d53a5a5e43 https://www.encodeproject.org/files/ENCFF458ASE/@@download/ENCFF458ASE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/ac2923a3-fc19-43c3-8273-50d4a8793212/ENCFF458ASE.fastq.gz ENCFF443LZC fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 paired-ended 2 /files/ENCFF458ASE/ 1614072700 Bradley Bernstein, Broad adba1a6c86ae785a74904f4c9c636b07 https://www.encodeproject.org/files/ENCFF443LZC/@@download/ENCFF443LZC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/0ca0936b-2295-4da3-b532-33c53fd21719/ENCFF443LZC.fastq.gz ENCFF615LEB fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 paired-ended 1 /files/ENCFF072EIX/ 1557293654 Bradley Bernstein, Broad 8dbba608cf5a120a73f5406d1b64f510 https://www.encodeproject.org/files/ENCFF615LEB/@@download/ENCFF615LEB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/ac2b3a81-cb06-4a48-9be4-32787c2bb322/ENCFF615LEB.fastq.gz ENCFF072EIX fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 paired-ended 2 /files/ENCFF615LEB/ 1592497189 Bradley Bernstein, Broad 995f0c0fcf48483d386c6c77fc3c2ae7 https://www.encodeproject.org/files/ENCFF072EIX/@@download/ENCFF072EIX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/d0e02bdd-a513-4f0e-b748-c78d6b505637/ENCFF072EIX.fastq.gz ENCFF878ZLP fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 paired-ended 1 /files/ENCFF269SMY/ 2529995567 Bradley Bernstein, Broad 2a0f795fc392c035f95673f74f436b2a https://www.encodeproject.org/files/ENCFF878ZLP/@@download/ENCFF878ZLP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/6136ebd9-929c-4c48-a223-7238d76cddd9/ENCFF878ZLP.fastq.gz ENCFF269SMY fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 paired-ended 2 /files/ENCFF878ZLP/ 2578615978 Bradley Bernstein, Broad 8dc01c7c27a06ba87c8ea34a935ddcc6 https://www.encodeproject.org/files/ENCFF269SMY/@@download/ENCFF269SMY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/9a79a3a2-909e-4ca7-9462-aa3ceb3c496a/ENCFF269SMY.fastq.gz ENCFF591CAT fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 paired-ended 2 /files/ENCFF625FBR/ 2544304967 Bradley Bernstein, Broad 4b20f56e788e04e8559a20de3ceb4016 https://www.encodeproject.org/files/ENCFF591CAT/@@download/ENCFF591CAT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/722a8d06-a8bf-4795-9353-f537065f763e/ENCFF591CAT.fastq.gz ENCFF625FBR fastq fastq reads ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 paired-ended 1 /files/ENCFF591CAT/ 2491794947 Bradley Bernstein, Broad 3d3e645ac04c382335bc904e9fb8658b https://www.encodeproject.org/files/ENCFF625FBR/@@download/ENCFF625FBR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/06/f8915e83-e322-478f-a7c2-5f496f485762/ENCFF625FBR.fastq.gz ENCFF076JCA bam bam unfiltered alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF269SMY/, /files/ENCFF643CGH/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/, /files/ENCFF591CAT/ 9438389619 ENCODE Processing Pipeline 764fd1022b76f6bdea40dc717f57054c https://www.encodeproject.org/files/ENCFF076JCA/@@download/ENCFF076JCA.bam released s3://encode-public/2016/10/13/2c63dacd-8f49-402a-b5de-9537208b6854/ENCFF076JCA.bam ENCODE3 GRCh38 archived ENCFF147MUE bam bam unfiltered alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF615LEB/, /files/ENCFF458ASE/, /files/ENCFF072EIX/, /files/ENCFF443LZC/ 6043652074 ENCODE Processing Pipeline 2ed4022e4f49db2771086e46fa14a326 https://www.encodeproject.org/files/ENCFF147MUE/@@download/ENCFF147MUE.bam released s3://encode-public/2016/10/13/4e128381-d85b-4502-955e-3f379dbf7fe2/ENCFF147MUE.bam ENCODE3 hg19 archived ENCFF233QJD bam bam unfiltered alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF269SMY/, /files/ENCFF807MUK/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/, /files/ENCFF591CAT/ 9401797728 ENCODE Processing Pipeline d445a969877578b1ea17b8d6b33ceaf4 https://www.encodeproject.org/files/ENCFF233QJD/@@download/ENCFF233QJD.bam released s3://encode-public/2016/10/13/625c0536-7864-4a61-ba87-e21296c5bb8a/ENCFF233QJD.bam ENCODE3 hg19 archived ENCFF245WUM bam bam unfiltered alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF615LEB/, /files/ENCFF458ASE/, /files/ENCFF072EIX/, /files/ENCFF643CGH/, /files/ENCFF443LZC/ 6066665932 ENCODE Processing Pipeline 536834ad0f4046a6ecaadeea252cc163 https://www.encodeproject.org/files/ENCFF245WUM/@@download/ENCFF245WUM.bam released s3://encode-public/2016/10/13/59db64b1-cb05-4bc3-9cca-e611642f4b6f/ENCFF245WUM.bam ENCODE3 GRCh38 archived ENCFF110XXU bam bam alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF615LEB/, /files/ENCFF458ASE/, /files/ENCFF072EIX/, /files/ENCFF443LZC/ 4907852536 ENCODE Processing Pipeline 4ca8e416baafc0655c087230bb3b0053 https://www.encodeproject.org/files/ENCFF110XXU/@@download/ENCFF110XXU.bam released s3://encode-public/2016/10/13/f9714848-73ff-4afd-8903-9f6d25837203/ENCFF110XXU.bam ENCODE3 hg19 archived ENCFF497JDI bam bam alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF615LEB/, /files/ENCFF458ASE/, /files/ENCFF072EIX/, /files/ENCFF643CGH/, /files/ENCFF443LZC/ 4911763584 ENCODE Processing Pipeline 3bf9c9aab7cfd3a5c079a17ac63fe8a0 https://www.encodeproject.org/files/ENCFF497JDI/@@download/ENCFF497JDI.bam released s3://encode-public/2016/10/13/83725db6-d419-4b80-9c90-3243b788699b/ENCFF497JDI.bam ENCODE3 GRCh38 archived ENCFF959FMO bam bam alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF269SMY/, /files/ENCFF643CGH/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/, /files/ENCFF591CAT/ 7797628590 ENCODE Processing Pipeline 5c7302b4c6b763ef7263e059a63ae344 https://www.encodeproject.org/files/ENCFF959FMO/@@download/ENCFF959FMO.bam released s3://encode-public/2016/10/13/8f483a6a-cf2d-4317-a3ba-c4f66dfe35e3/ENCFF959FMO.bam ENCODE3 GRCh38 archived ENCFF989ZJD bam bam alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF269SMY/, /files/ENCFF807MUK/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/, /files/ENCFF591CAT/ 7787246335 ENCODE Processing Pipeline d6217278a8b15b9989070a4d2546bcb5 https://www.encodeproject.org/files/ENCFF989ZJD/@@download/ENCFF989ZJD.bam released s3://encode-public/2016/10/13/81de1765-bffd-48b2-91bb-3c9b1138fb9a/ENCFF989ZJD.bam ENCODE3 hg19 archived ENCFF614ONL bam bam alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF615LEB/, /files/ENCFF458ASE/, /files/ENCFF643CGH/ 2388281330 ENCODE Processing Pipeline e0752b6910910377f1946cf6055978e7 https://www.encodeproject.org/files/ENCFF614ONL/@@download/ENCFF614ONL.bam released s3://encode-public/2017/01/09/8377f19e-97dc-47bf-9f97-4b7df4b9bd8b/ENCFF614ONL.bam ENCODE3 GRCh38 archived ENCFF470NFL bam bam unfiltered alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF615LEB/, /files/ENCFF458ASE/, /files/ENCFF643CGH/ 2968785962 ENCODE Processing Pipeline ed9e7501a4e4161c86ae5dfc80997955 https://www.encodeproject.org/files/ENCFF470NFL/@@download/ENCFF470NFL.bam released s3://encode-public/2017/01/09/3cf3f314-c650-4ec8-b33c-2229b5614dff/ENCFF470NFL.bam ENCODE3 GRCh38 archived ENCFF673QQK bam bam alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF615LEB/, /files/ENCFF458ASE/ 2385225014 ENCODE Processing Pipeline e655cb830817da50083e2599141f55d4 https://www.encodeproject.org/files/ENCFF673QQK/@@download/ENCFF673QQK.bam released s3://encode-public/2017/01/10/2a6eaddb-b5d0-4d9f-b74d-35fee94e69c4/ENCFF673QQK.bam ENCODE3 hg19 archived ENCFF171MQP bam bam alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/ 3763812147 ENCODE Processing Pipeline db117237759cb245986f3c09fe36d99f https://www.encodeproject.org/files/ENCFF171MQP/@@download/ENCFF171MQP.bam released s3://encode-public/2017/01/10/e63276f3-4410-4b52-af59-d6796cb30fb4/ENCFF171MQP.bam ENCODE3 GRCh38 archived ENCFF476GYW bam bam unfiltered alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/ 4620203417 ENCODE Processing Pipeline 15e70c26fdeb7570466cb384a728a366 https://www.encodeproject.org/files/ENCFF476GYW/@@download/ENCFF476GYW.bam released s3://encode-public/2017/01/10/b50ceb08-3594-43a0-83fb-58fc57584eb5/ENCFF476GYW.bam ENCODE3 hg19 archived ENCFF431EFN bam bam unfiltered alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF615LEB/, /files/ENCFF458ASE/ 2958391215 ENCODE Processing Pipeline 300153d20b17ea9ec1405b40c9a2bd42 https://www.encodeproject.org/files/ENCFF431EFN/@@download/ENCFF431EFN.bam released s3://encode-public/2017/01/10/ea54fe51-941f-4b77-aa3f-5aa283a0196a/ENCFF431EFN.bam ENCODE3 hg19 archived ENCFF841ELU bam bam unfiltered alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/ 4634993531 ENCODE Processing Pipeline eec1cf91da56883018196748064e74af https://www.encodeproject.org/files/ENCFF841ELU/@@download/ENCFF841ELU.bam released s3://encode-public/2017/01/10/4379fcbf-bb1e-4c39-a9ed-cffccc0f2b96/ENCFF841ELU.bam ENCODE3 GRCh38 archived ENCFF538MGJ bam bam alignments hg19 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF878ZLP/, /files/ENCFF625FBR/ 3757692698 ENCODE Processing Pipeline 9db66f4d3d745af038b98c3759c05fe0 https://www.encodeproject.org/files/ENCFF538MGJ/@@download/ENCFF538MGJ.bam released s3://encode-public/2017/01/10/5c83b4a3-72b2-4f84-b63f-06dde4b424c7/ENCFF538MGJ.bam ENCODE3 hg19 archived ENCFF310ROZ bam bam unfiltered alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF615LEB/, /files/ENCFF443LZC/, /files/ENCFF458ASE/, /files/ENCFF110MCL/, /files/ENCFF072EIX/ 6127573069 ENCODE Processing Pipeline 4ffa80a71c0bbf3ca3898588e08b98d6 https://www.encodeproject.org/files/ENCFF310ROZ/@@download/ENCFF310ROZ.bam released s3://encode-public/2020/10/19/409aba58-dc46-4923-a360-e15550397948/ENCFF310ROZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF060TTT bam bam unfiltered alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF878ZLP/, /files/ENCFF269SMY/, /files/ENCFF591CAT/, /files/ENCFF625FBR/ 9544381624 ENCODE Processing Pipeline d8ac7eef41f55a024c63b1f64f468fc7 https://www.encodeproject.org/files/ENCFF060TTT/@@download/ENCFF060TTT.bam released s3://encode-public/2020/10/19/0f4a00fd-e357-4af9-85d1-207b35ed68ec/ENCFF060TTT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF966ORL bam bam alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF878ZLP/, /files/ENCFF269SMY/, /files/ENCFF591CAT/, /files/ENCFF625FBR/ 7921246254 ENCODE Processing Pipeline 7c17d1f34e4826588e90bd626791a35c https://www.encodeproject.org/files/ENCFF966ORL/@@download/ENCFF966ORL.bam released s3://encode-public/2020/10/19/4894978c-79ab-4bd6-99dc-ce56cea198c4/ENCFF966ORL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF459LLN bam bam alignments GRCh38 ENCSR185OHN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 76 /files/ENCFF615LEB/, /files/ENCFF443LZC/, /files/ENCFF458ASE/, /files/ENCFF110MCL/, /files/ENCFF072EIX/ 4978092319 ENCODE Processing Pipeline 65e35e32895d78f5d1602c72d3cb929c https://www.encodeproject.org/files/ENCFF459LLN/@@download/ENCFF459LLN.bam released s3://encode-public/2020/10/19/00a6aa61-6358-4f84-b558-47fe3978cc4d/ENCFF459LLN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF000YQB fastq fastq reads ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 509759932 Michael Snyder, Stanford 35dd162f54c41b35f341d33ba19afdaf https://www.encodeproject.org/files/ENCFF000YQB/@@download/ENCFF000YQB.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/44acb4e3-b4e1-4c94-a244-3a09d3fbbbd7/ENCFF000YQB.fastq.gz low read depth insufficient read length ENCFF000YQC fastq fastq reads ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 548636594 Michael Snyder, Stanford d81548cb88530cef9c3d5a5853c85205 https://www.encodeproject.org/files/ENCFF000YQC/@@download/ENCFF000YQC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/b0986823-c078-4c03-8504-d54d6dab852d/ENCFF000YQC.fastq.gz low read depth insufficient read length ENCFF000YQN bigWig bigWig signal hg19 ENCSR000EHM Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 433194320 Michael Snyder, Stanford abe0ccbcdf4de191fc9b3cf1194856fa https://www.encodeproject.org/files/ENCFF000YQN/@@download/ENCFF000YQN.bigWig archived s3://encode-public/2012/07/01/fed9b947-55c7-4365-8fc2-006ecee587d7/ENCFF000YQN.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000YQO bam bam alignments hg19 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000YQB/ 652054276 Michael Snyder, Stanford 8f9b569f2a8d58733b32551b810d08de https://www.encodeproject.org/files/ENCFF000YQO/@@download/ENCFF000YQO.bam archived s3://encode-public/2012/07/01/f72adcc5-22b6-4b21-b6f8-25842f2fa184/ENCFF000YQO.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000YQP bam bam alignments hg19 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000YQC/ 702043807 Michael Snyder, Stanford cfaa74b05db5b9c18ac23de0f68d163a https://www.encodeproject.org/files/ENCFF000YQP/@@download/ENCFF000YQP.bam archived s3://encode-public/2012/07/01/b7e6021f-8276-472c-b53f-c7861eee542f/ENCFF000YQP.bam Lab custom hg19 archived low read depth insufficient read length ENCFF368JQX bam bam unfiltered alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000YQB/ 655559009 ENCODE Processing Pipeline f9f853d62680dba95979cab1a0b4c147 https://www.encodeproject.org/files/ENCFF368JQX/@@download/ENCFF368JQX.bam released s3://encode-public/2016/10/26/b453459f-66a1-46d2-b908-9abb19ef25c7/ENCFF368JQX.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF648WLU bam bam unfiltered alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000YQC/, /files/ENCFF643CGH/ 705793644 ENCODE Processing Pipeline fbb213e7363cbd14b7f53f23e94a03c3 https://www.encodeproject.org/files/ENCFF648WLU/@@download/ENCFF648WLU.bam released s3://encode-public/2016/10/26/95f1ae8c-5c0a-4de9-b51a-25bc5c23ccdd/ENCFF648WLU.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF715JBE bam bam alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000YQB/ 392424274 ENCODE Processing Pipeline 1b2115cf881171287d365afed71928d7 https://www.encodeproject.org/files/ENCFF715JBE/@@download/ENCFF715JBE.bam released s3://encode-public/2016/10/26/ee649a9b-2199-4722-ba2f-9e7cf6e3441a/ENCFF715JBE.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF156NSV bam bam alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000YQC/, /files/ENCFF643CGH/ 427016781 ENCODE Processing Pipeline f7026ff1994c756afe5b855f89e9bb97 https://www.encodeproject.org/files/ENCFF156NSV/@@download/ENCFF156NSV.bam released s3://encode-public/2016/10/26/cc80ce72-0483-442c-a2fe-dcf842f57e92/ENCFF156NSV.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF282FDB bam bam unfiltered alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000YQB/ 626330558 ENCODE Processing Pipeline 62ed71c06064fabea9d49b755879aacf https://www.encodeproject.org/files/ENCFF282FDB/@@download/ENCFF282FDB.bam released s3://encode-public/2020/10/27/d2eac8ae-6d5b-4f7f-a9c7-03c453eb68e0/ENCFF282FDB.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF414XMJ bam bam unfiltered alignments hg19 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF807MUK/, /files/ENCFF000YQB/ 653506499 ENCODE Processing Pipeline 5dc7064c0baf9cc8129bd3ff33cbafcc https://www.encodeproject.org/files/ENCFF414XMJ/@@download/ENCFF414XMJ.bam released s3://encode-public/2017/07/11/c604cbef-b9b3-41c6-9c72-5bb78a79c171/ENCFF414XMJ.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF732TLR bam bam alignments hg19 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF807MUK/, /files/ENCFF000YQB/ 392833147 ENCODE Processing Pipeline 516b1d57cb5908c0b970c29619c179ad https://www.encodeproject.org/files/ENCFF732TLR/@@download/ENCFF732TLR.bam released s3://encode-public/2017/07/11/d11afb11-7769-4073-a65d-8a2316b96123/ENCFF732TLR.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF638ZYS bam bam unfiltered alignments hg19 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000YQC/, /files/ENCFF807MUK/ 703526359 ENCODE Processing Pipeline 105e2ebe4602f8781e19246a2de4ee36 https://www.encodeproject.org/files/ENCFF638ZYS/@@download/ENCFF638ZYS.bam released s3://encode-public/2017/07/11/fb1b0d9f-4964-459f-b816-75455861d9d4/ENCFF638ZYS.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF498SAC bam bam alignments hg19 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000YQC/, /files/ENCFF807MUK/ 427449835 ENCODE Processing Pipeline 46fba662c3f091f71bdead3657e36407 https://www.encodeproject.org/files/ENCFF498SAC/@@download/ENCFF498SAC.bam released s3://encode-public/2017/07/11/25174c03-3d7f-4b6f-ad5a-078be9abc0f0/ENCFF498SAC.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF956FGQ bam bam unfiltered alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000YQC/, /files/ENCFF110MCL/ 674072666 ENCODE Processing Pipeline 54ebc457d11a1625223355341b876ef8 https://www.encodeproject.org/files/ENCFF956FGQ/@@download/ENCFF956FGQ.bam released s3://encode-public/2020/10/27/11756bbd-9939-498d-b49c-5daeb822696a/ENCFF956FGQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF769RAH bam bam alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000YQB/ 401573585 ENCODE Processing Pipeline 9040e3ac6e510bd28ac0b5647ce1e09f https://www.encodeproject.org/files/ENCFF769RAH/@@download/ENCFF769RAH.bam released s3://encode-public/2020/10/27/12445fd5-c6a2-4777-bbf4-652dcd3c0069/ENCFF769RAH.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF147YPF bam bam alignments GRCh38 ENCSR000EHM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000YQC/, /files/ENCFF110MCL/ 438725626 ENCODE Processing Pipeline 50d370aae2aaabf003470fcccfaf7087 https://www.encodeproject.org/files/ENCFF147YPF/@@download/ENCFF147YPF.bam released s3://encode-public/2020/10/27/600cb8ed-1eff-4d85-a2f6-e85065518102/ENCFF147YPF.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF363ZAJ bam bam unfiltered alignments hg19 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECL/ 1855972020 ENCODE Processing Pipeline e674c72bc6184e305b03b42a3cba5857 https://www.encodeproject.org/files/ENCFF363ZAJ/@@download/ENCFF363ZAJ.bam released s3://encode-public/2018/02/21/dfe07ee2-f8e0-44e7-9c77-94a602ead3b3/ENCFF363ZAJ.bam ENCODE3 hg19 archived low read length ENCFF071MKT bam bam unfiltered alignments hg19 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECM/ 1917190871 ENCODE Processing Pipeline 13dddc8205aaac90a1e9d1aaed16b00e https://www.encodeproject.org/files/ENCFF071MKT/@@download/ENCFF071MKT.bam released s3://encode-public/2018/02/22/327c53b0-ed19-445c-8f76-3dd6a901168d/ENCFF071MKT.bam ENCODE3 hg19 archived low read length ENCFF002ECL fastq fastq reads ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 single-ended 1348421623 Michael Snyder, Stanford ec7b20dc84a6a6c5bf4b0381fe5b9613 SRA:SRR5112305 https://www.encodeproject.org/files/ENCFF002ECL/@@download/ENCFF002ECL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/55791d92-076b-4718-bd32-fa01555224ab/ENCFF002ECL.fastq.gz low read length ENCFF002ECM fastq fastq reads ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 single-ended 1406474268 Michael Snyder, Stanford c0bbb9c83bdafb6bef550d2f05e383d7 SRA:SRR5112304 https://www.encodeproject.org/files/ENCFF002ECM/@@download/ENCFF002ECM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/56e7eb02-4a47-41b0-ac8e-b6b658f610e2/ENCFF002ECM.fastq.gz low read length ENCFF425JYG bam bam alignments hg19 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECL/ 1329809873 ENCODE Processing Pipeline 3e2864a17946f920f19ea594536ee17b https://www.encodeproject.org/files/ENCFF425JYG/@@download/ENCFF425JYG.bam released s3://encode-public/2015/10/29/2bc2a05f-386c-4c87-b8dd-37881c94ab07/ENCFF425JYG.bam ENCODE3 hg19 archived low read length ENCFF863STQ bam bam alignments hg19 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECM/ 1406535310 ENCODE Processing Pipeline 23e7320946082206943f6810cdf56244 https://www.encodeproject.org/files/ENCFF863STQ/@@download/ENCFF863STQ.bam released s3://encode-public/2015/10/29/7cce5833-3650-405f-8bf7-2d4bbeab984e/ENCFF863STQ.bam ENCODE3 hg19 archived low read length ENCFF424XCA bam bam unfiltered alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECL/ 1866080841 ENCODE Processing Pipeline 54973fcddb4e252fa78080ea933dfa7d https://www.encodeproject.org/files/ENCFF424XCA/@@download/ENCFF424XCA.bam released s3://encode-public/2016/05/06/13371932-3b3f-4c6f-8d42-5b6bf613c066/ENCFF424XCA.bam ENCODE3 GRCh38 archived low read length ENCFF949XNJ bam bam alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECL/ 1329589028 ENCODE Processing Pipeline 0466c8c4f9689fff43ba00a1bce2694a https://www.encodeproject.org/files/ENCFF949XNJ/@@download/ENCFF949XNJ.bam released s3://encode-public/2016/05/06/af001a3c-ddd5-49d3-adb2-c720933444d2/ENCFF949XNJ.bam ENCODE3 GRCh38 archived low read length ENCFF563GBN bam bam unfiltered alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECM/ 1927631619 ENCODE Processing Pipeline 13317d25d677281921e317409f811493 https://www.encodeproject.org/files/ENCFF563GBN/@@download/ENCFF563GBN.bam released s3://encode-public/2016/05/06/c9cafe23-b862-47c7-bf4a-40f9fc2f48ae/ENCFF563GBN.bam ENCODE3 GRCh38 archived low read length ENCFF918AJW bam bam alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECM/ 1406442100 ENCODE Processing Pipeline f0ccd7a5e21c62d72711038adb1159ec https://www.encodeproject.org/files/ENCFF918AJW/@@download/ENCFF918AJW.bam released s3://encode-public/2016/05/06/935221cf-c76c-4cf5-985d-76696a289d14/ENCFF918AJW.bam ENCODE3 GRCh38 archived low read length ENCFF712BOL bam bam unfiltered alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECM/, /files/ENCFF110MCL/ 1875464779 ENCODE Processing Pipeline 3725dc1a6c97b1808232cd8be8d54f23 https://www.encodeproject.org/files/ENCFF712BOL/@@download/ENCFF712BOL.bam released s3://encode-public/2020/06/13/3a3d7d84-7d4c-411d-8a52-d8d5d05697bd/ENCFF712BOL.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF998ELB bam bam unfiltered alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF002ECL/ 1814311144 ENCODE Processing Pipeline e2215207e391b5f69eda4c7e2813a70a https://www.encodeproject.org/files/ENCFF998ELB/@@download/ENCFF998ELB.bam released s3://encode-public/2020/06/13/f9e34357-143a-4342-a1ba-a91c9a2f9e44/ENCFF998ELB.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF821HQW bam bam alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECM/, /files/ENCFF110MCL/ 1506641305 ENCODE Processing Pipeline 62c0e0a86159e972c5e05f1331b9ba00 https://www.encodeproject.org/files/ENCFF821HQW/@@download/ENCFF821HQW.bam released s3://encode-public/2020/06/13/5cdec204-fd2c-4fab-a12b-4aa8fbe96b28/ENCFF821HQW.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF302AJZ bam bam alignments GRCh38 ENCSR949BZP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF002ECL/ 1432569517 ENCODE Processing Pipeline cc2a0aed20eb688b2834f4e7dca9478b https://www.encodeproject.org/files/ENCFF302AJZ/@@download/ENCFF302AJZ.bam released s3://encode-public/2020/06/13/b32822bd-bfce-4805-963c-29e5438b30c8/ENCFF302AJZ.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF000YPM fastq fastq reads ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 34 single-ended 886178144 Sherman Weissman, Yale d76a7f00cd52436109c89c1a7b66bb9e https://www.encodeproject.org/files/ENCFF000YPM/@@download/ENCFF000YPM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/4a6117db-d1ad-4a97-a4c4-248479fbd9fe/ENCFF000YPM.fastq.gz insufficient read length, insufficient read depth ENCFF000YQH bigWig bigWig signal hg19 ENCSR000FBB Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 311822472 Sherman Weissman, Yale 07f5d5ce21aaad039ef44b1364ea9ba9 https://www.encodeproject.org/files/ENCFF000YQH/@@download/ENCFF000YQH.bigWig archived s3://encode-public/2010/12/02/f9d190d2-6f47-4f50-8aac-45f600f23d90/ENCFF000YQH.bigWig Lab custom hg19 released insufficient read length, insufficient read depth ENCFF000YQI bam bam alignments hg19 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YPM/ 1136598894 Sherman Weissman, Yale 0cc7433b096c51dff8488dd09d5dfcdf https://www.encodeproject.org/files/ENCFF000YQI/@@download/ENCFF000YQI.bam archived s3://encode-public/2010/12/02/caae606f-7147-437a-9f43-8d383ef8abf8/ENCFF000YQI.bam Lab custom hg19 released insufficient read length, insufficient read depth ENCFF287WTN bam bam alignments hg19 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000YPM/ 448429354 ENCODE Processing Pipeline 00b5833ca56607290ce30eb0374b4f76 https://www.encodeproject.org/files/ENCFF287WTN/@@download/ENCFF287WTN.bam released s3://encode-public/2016/10/15/ddaf3a7d-f576-43f7-ac1c-ad2140036265/ENCFF287WTN.bam ENCODE3 hg19 released insufficient read length, insufficient read depth ENCFF450WIH bam bam unfiltered alignments hg19 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000YPM/ 1068513063 ENCODE Processing Pipeline 50e18a5380caf5aa40793a410fc99d7e https://www.encodeproject.org/files/ENCFF450WIH/@@download/ENCFF450WIH.bam released s3://encode-public/2016/10/14/910d09e8-c3de-4df6-a482-c8a5133d8291/ENCFF450WIH.bam ENCODE3 hg19 released insufficient read length, insufficient read depth ENCFF036AXR bam bam unfiltered alignments GRCh38 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000YPM/ 1071818226 ENCODE Processing Pipeline 4ab1998be85395917891449b4b40709d https://www.encodeproject.org/files/ENCFF036AXR/@@download/ENCFF036AXR.bam released s3://encode-public/2017/02/23/d6490580-6724-412c-bdfc-3ce5154ee282/ENCFF036AXR.bam ENCODE3 GRCh38 released insufficient read length, insufficient read depth ENCFF942FFX bam bam alignments GRCh38 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000YPM/ 447886050 ENCODE Processing Pipeline 0a15b3e7497c8fddefce22539069065b https://www.encodeproject.org/files/ENCFF942FFX/@@download/ENCFF942FFX.bam released s3://encode-public/2017/02/23/983c71ea-3527-43ca-8de0-6b7d5c49aecb/ENCFF942FFX.bam ENCODE3 GRCh38 released insufficient read length, insufficient read depth ENCFF886TMY bam bam unfiltered alignments GRCh38 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YPM/, /files/ENCFF110MCL/ 702081913 ENCODE Processing Pipeline acaec3206efc87f89b75fb6d6ae7447e https://www.encodeproject.org/files/ENCFF886TMY/@@download/ENCFF886TMY.bam released s3://encode-public/2020/10/27/ff18ca7f-188a-4062-9c16-4851289a8353/ENCFF886TMY.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF017YME bam bam alignments GRCh38 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YPM/, /files/ENCFF110MCL/ 326437373 ENCODE Processing Pipeline 1e2ad390b4ee35d4a8a6ed1f7f817793 https://www.encodeproject.org/files/ENCFF017YME/@@download/ENCFF017YME.bam released s3://encode-public/2020/10/27/deba899c-2744-41fa-8b45-522ef2b91900/ENCFF017YME.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF007MOP bam bam unfiltered alignments GRCh38 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPM/, /files/ENCFF110MCL/ 992176702 ENCODE Processing Pipeline 9ea1cef16337369341c0e2e57e997ec3 https://www.encodeproject.org/files/ENCFF007MOP/@@download/ENCFF007MOP.bam released s3://encode-public/2021/02/04/891c5dbb-8961-4da7-8aae-71491a1800fd/ENCFF007MOP.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length, insufficient read depth ENCFF392JOR bam bam alignments GRCh38 ENCSR000FBB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens Interferon gamma 30.0 minute DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPM/, /files/ENCFF110MCL/ 358235011 ENCODE Processing Pipeline 759e1c36f62e474a251d6f717171911d https://www.encodeproject.org/files/ENCFF392JOR/@@download/ENCFF392JOR.bam released s3://encode-public/2021/02/04/9b1ff9de-6626-49dd-a1e0-a6af5b52e8c8/ENCFF392JOR.bam ENCODE4 v1.6.1 GRCh38 released insufficient read length, insufficient read depth ENCFF553SNC fastq fastq reads ENCSR114JYK Control ChIP-seq /fly-donors/ENCDO322WYH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33441/'], '@type': ['Target', 'Item'], 'name': 'insv-dmelanogaster', 'label': 'insv', '@id': '/targets/insv-dmelanogaster/', 'title': 'insv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6ea5ffe4-2295-41ff-b608-8d3b3433aeb0', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 661225544 Kevin White, UChicago 7c4f66c3a515ad78eb4e879f8e9e66a2 https://www.encodeproject.org/files/ENCFF553SNC/@@download/ENCFF553SNC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/dd83db56-2694-47fd-b5bb-6cfc679cbbee/ENCFF553SNC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF025VPN bam bam alignments dm3 ENCSR114JYK Control ChIP-seq /fly-donors/ENCDO322WYH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33441/'], '@type': ['Target', 'Item'], 'name': 'insv-dmelanogaster', 'label': 'insv', '@id': '/targets/insv-dmelanogaster/', 'title': 'insv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6ea5ffe4-2295-41ff-b608-8d3b3433aeb0', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF553SNC/ 970150373 Kevin White, UChicago 606e7c05105ba71e68f2d624f463bf2d https://www.encodeproject.org/files/ENCFF025VPN/@@download/ENCFF025VPN.bam released s3://encode-public/2015/08/03/5b43d77c-bb81-4523-a500-fc0c5877af7d/ENCFF025VPN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF346NFJ bigWig bigWig signal of unique reads dm3 ENCSR114JYK Control ChIP-seq /fly-donors/ENCDO322WYH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33441/'], '@type': ['Target', 'Item'], 'name': 'insv-dmelanogaster', 'label': 'insv', '@id': '/targets/insv-dmelanogaster/', 'title': 'insv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6ea5ffe4-2295-41ff-b608-8d3b3433aeb0', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF025VPN/ 15347774 Kevin White, UChicago 5ad3458b5b2fc17ba919537f84f42108 https://www.encodeproject.org/files/ENCFF346NFJ/@@download/ENCFF346NFJ.bigWig released s3://encode-public/2015/10/05/564150a9-8153-4ba6-a3d3-1df1f003d01d/ENCFF346NFJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF490PBG bigWig bigWig read-depth normalized signal dm3 ENCSR114JYK Control ChIP-seq /fly-donors/ENCDO322WYH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33441/'], '@type': ['Target', 'Item'], 'name': 'insv-dmelanogaster', 'label': 'insv', '@id': '/targets/insv-dmelanogaster/', 'title': 'insv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6ea5ffe4-2295-41ff-b608-8d3b3433aeb0', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF025VPN/ 15352017 Kevin White, UChicago ffec8f6f88c49f7de2e83f3c670a3b15 https://www.encodeproject.org/files/ENCFF490PBG/@@download/ENCFF490PBG.bigWig released s3://encode-public/2015/10/05/11e4e553-54d0-43e2-ac11-c6d1947b8310/ENCFF490PBG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF204YJK bam bam alignments dm6 ENCSR114JYK Control ChIP-seq /fly-donors/ENCDO322WYH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33441/'], '@type': ['Target', 'Item'], 'name': 'insv-dmelanogaster', 'label': 'insv', '@id': '/targets/insv-dmelanogaster/', 'title': 'insv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6ea5ffe4-2295-41ff-b608-8d3b3433aeb0', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF553SNC/ 962158848 Kevin White, UChicago 72a32bb1d86c84dd0266c05f72126919 https://www.encodeproject.org/files/ENCFF204YJK/@@download/ENCFF204YJK.bam released s3://encode-public/2016/04/21/b1daa01b-b36e-4823-af28-d0f29d714355/ENCFF204YJK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF108TYF bigWig bigWig read-depth normalized signal dm6 ENCSR114JYK Control ChIP-seq /fly-donors/ENCDO322WYH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33441/'], '@type': ['Target', 'Item'], 'name': 'insv-dmelanogaster', 'label': 'insv', '@id': '/targets/insv-dmelanogaster/', 'title': 'insv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6ea5ffe4-2295-41ff-b608-8d3b3433aeb0', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF204YJK/ 17476824 Kevin White, UChicago bf4872b749ab96485d348fa10ba39a57 https://www.encodeproject.org/files/ENCFF108TYF/@@download/ENCFF108TYF.bigWig released s3://encode-public/2016/06/21/655dd7c7-1ae0-48d3-91b8-efa401c45085/ENCFF108TYF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF465NVV bigWig bigWig signal of unique reads dm6 ENCSR114JYK Control ChIP-seq /fly-donors/ENCDO322WYH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33441/'], '@type': ['Target', 'Item'], 'name': 'insv-dmelanogaster', 'label': 'insv', '@id': '/targets/insv-dmelanogaster/', 'title': 'insv (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6ea5ffe4-2295-41ff-b608-8d3b3433aeb0', 'status': 'released'} dm3 2L 2564477 2584013 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF204YJK/ 17476652 Kevin White, UChicago 00b2e5518b79772b203b6fb76fbb26f0 https://www.encodeproject.org/files/ENCFF465NVV/@@download/ENCFF465NVV.bigWig released s3://encode-public/2016/06/21/4d6fcfb6-94bd-4286-b83e-b0ab62790ecf/ENCFF465NVV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF356AVC fastq fastq reads ENCSR130XZA Control ChIP-seq /fly-donors/ENCDO612QLC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1095084166 Kevin White, UChicago f4f2227e9e4499f0646ef506c690ae05 https://www.encodeproject.org/files/ENCFF356AVC/@@download/ENCFF356AVC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/926c07b9-4153-4947-850b-d48c360d295e/ENCFF356AVC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF538NET bam bam alignments dm3 ENCSR130XZA Control ChIP-seq /fly-donors/ENCDO612QLC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF356AVC/ 1565161442 Kevin White, UChicago 0935e4d864b07e5248fc2d00d3c9ecd6 https://www.encodeproject.org/files/ENCFF538NET/@@download/ENCFF538NET.bam released s3://encode-public/2015/08/03/1c12fc07-c49d-4db9-bcab-3d214b8fd033/ENCFF538NET.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF895NHO bigWig bigWig signal of unique reads dm3 ENCSR130XZA Control ChIP-seq /fly-donors/ENCDO612QLC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF538NET/ 15319573 Kevin White, UChicago 4ad9793d258cd117081a0340a27473cf https://www.encodeproject.org/files/ENCFF895NHO/@@download/ENCFF895NHO.bigWig released s3://encode-public/2015/10/05/939a60b5-491b-4671-b0c5-9a0e7ce63f02/ENCFF895NHO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF637VKH bigWig bigWig read-depth normalized signal dm3 ENCSR130XZA Control ChIP-seq /fly-donors/ENCDO612QLC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF538NET/ 15330999 Kevin White, UChicago 9ba4ff226eedb8bee6a31e65e40d0dc7 https://www.encodeproject.org/files/ENCFF637VKH/@@download/ENCFF637VKH.bigWig released s3://encode-public/2015/10/05/11f7d967-4fa8-49a6-9f5b-c6bcab19c766/ENCFF637VKH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF529KPC bam bam alignments dm6 ENCSR130XZA Control ChIP-seq /fly-donors/ENCDO612QLC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF356AVC/ 1543038774 Kevin White, UChicago 89d04a83999c248846d11ae3850c2710 https://www.encodeproject.org/files/ENCFF529KPC/@@download/ENCFF529KPC.bam released s3://encode-public/2016/04/22/00f2789d-2f4d-44e0-b731-1ed5270723db/ENCFF529KPC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF424JWD bigWig bigWig read-depth normalized signal dm6 ENCSR130XZA Control ChIP-seq /fly-donors/ENCDO612QLC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF529KPC/ 17424766 Kevin White, UChicago 294de33da0ed4d268d86fe2ebfcd87ad https://www.encodeproject.org/files/ENCFF424JWD/@@download/ENCFF424JWD.bigWig released s3://encode-public/2016/06/20/8262c790-5ac7-448d-a1f6-886b48650857/ENCFF424JWD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF064PQP bigWig bigWig signal of unique reads dm6 ENCSR130XZA Control ChIP-seq /fly-donors/ENCDO612QLC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF529KPC/ 17414663 Kevin White, UChicago e20688a62cc611f9cb0cd09452ed54df https://www.encodeproject.org/files/ENCFF064PQP/@@download/ENCFF064PQP.bigWig released s3://encode-public/2016/06/20/5063d5bd-875b-42f3-8954-7b117e847437/ENCFF064PQP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000ZQC bam bam alignments hg19 ENCSR000EYA Control ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 32 825525296 Peggy Farnham, USC fc84f64e8c1282d57f9558ab346293bb https://www.encodeproject.org/files/ENCFF000ZQC/@@download/ENCFF000ZQC.bam archived s3://encode-public/2010/12/06/7ecbf75b-b5d5-4de8-964a-f0fc7a5f6d62/ENCFF000ZQC.bam Lab custom hg19 archived low read length ENCFF000ZQD bigWig bigWig signal hg19 ENCSR000EYA Control ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 334638578 Peggy Farnham, USC c65d7ad2d40e9d0218e31b93a8a455be https://www.encodeproject.org/files/ENCFF000ZQD/@@download/ENCFF000ZQD.bigWig archived s3://encode-public/2010/12/06/14fb82a0-0089-4cc5-a791-0acc8e7c0601/ENCFF000ZQD.bigWig Lab custom hg19 archived low read length ENCFF000ZSI fastq fastq reads ENCSR000EYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 1691497956 Peggy Farnham, USC 3a168d4de1d8f61fa64c39b493a26760 https://www.encodeproject.org/files/ENCFF000ZSI/@@download/ENCFF000ZSI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/773d1911-858e-4e4f-b85b-29e2ade759ac/ENCFF000ZSI.fastq.gz low read length ENCFF163MVW bam bam unfiltered alignments GRCh38 ENCSR000EYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZSI/, /files/ENCFF643CGH/ 2076039400 ENCODE Processing Pipeline 53b9f95bcc16ece36e07905c5025fd7e https://www.encodeproject.org/files/ENCFF163MVW/@@download/ENCFF163MVW.bam released s3://encode-public/2016/10/26/7125133b-c9f8-4ace-a534-c2db12d92544/ENCFF163MVW.bam ENCODE3 GRCh38 archived low read length ENCFF530TVV bam bam alignments GRCh38 ENCSR000EYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZSI/, /files/ENCFF643CGH/ 1320038550 ENCODE Processing Pipeline e34be1779241980a6a25b41896c9656f https://www.encodeproject.org/files/ENCFF530TVV/@@download/ENCFF530TVV.bam released s3://encode-public/2016/10/26/3c38cece-e1d9-43a1-b297-ec4a8eadbe9c/ENCFF530TVV.bam ENCODE3 GRCh38 archived low read length ENCFF397RZJ bam bam unfiltered alignments hg19 ENCSR000EYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZSI/, /files/ENCFF807MUK/ 2070611367 ENCODE Processing Pipeline d5f3162dfd073b285197f33d8cd72323 https://www.encodeproject.org/files/ENCFF397RZJ/@@download/ENCFF397RZJ.bam released s3://encode-public/2016/11/13/c5c71fef-5ab2-4907-b498-84beab57922b/ENCFF397RZJ.bam ENCODE3 hg19 archived low read length ENCFF610BER bam bam alignments hg19 ENCSR000EYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZSI/, /files/ENCFF807MUK/ 1320188113 ENCODE Processing Pipeline 29f8b9e7eee72939161dc0de7b5397e8 https://www.encodeproject.org/files/ENCFF610BER/@@download/ENCFF610BER.bam released s3://encode-public/2016/11/13/ca8d1e30-0500-4f02-a289-0a24fbe251ce/ENCFF610BER.bam ENCODE3 hg19 archived low read length ENCFF524MIO bam bam unfiltered alignments GRCh38 ENCSR000EYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZSI/ 2038388252 ENCODE Processing Pipeline 60f6326667a7c935f5cadda089c297e9 https://www.encodeproject.org/files/ENCFF524MIO/@@download/ENCFF524MIO.bam released s3://encode-public/2020/10/27/95fb02d7-a87a-4e97-af55-0f740fdeee8a/ENCFF524MIO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF872SXO bam bam alignments GRCh38 ENCSR000EYA Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0002717 SH-SY5Y cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZSI/ 1451033479 ENCODE Processing Pipeline 4aff4ce9223fd6a70198d1b966d7d954 https://www.encodeproject.org/files/ENCFF872SXO/@@download/ENCFF872SXO.bam released s3://encode-public/2020/10/27/85ede0b7-f5de-4e71-a0e2-9d6185833e58/ENCFF872SXO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000RCD bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000RCK/ 997285378 Richard Myers, HAIB c994a2099be98b0f58558a306f8ca411 https://www.encodeproject.org/files/ENCFF000RCD/@@download/ENCFF000RCD.bam archived s3://encode-public/2012/01/23/db3d0572-8029-474b-b5a5-f2e58c9f054f/ENCFF000RCD.bam Lab custom hg19 archived low read depth ENCFF000RCE bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000RCP/ 1685932504 Richard Myers, HAIB bc1edab9d60c0af6ade10ec386bed2bb https://www.encodeproject.org/files/ENCFF000RCE/@@download/ENCFF000RCE.bam archived s3://encode-public/2012/01/23/60fcf232-0498-4d88-a0b7-dcadc7062520/ENCFF000RCE.bam Lab custom hg19 archived low read depth ENCFF000RCG bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF000RCM/ 1647054780 Richard Myers, HAIB a21165d3e18659758fb985f0feb6eeab https://www.encodeproject.org/files/ENCFF000RCG/@@download/ENCFF000RCG.bam archived s3://encode-public/2012/01/23/ca192f01-e14c-4e2b-9bd4-6d12f2f54661/ENCFF000RCG.bam Lab custom hg19 archived low read depth ENCFF000RCH bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF000RCT/ 1459454063 Richard Myers, HAIB 90f147b5b809617572fb56a0def11a70 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s3://encode-public/2012/01/23/854dab8d-1ab7-4366-8337-4653912ef772/ENCFF000RCJ.bigWig Lab custom hg19 archived low read depth ENCFF000RCK fastq fastq reads ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 single-ended 1008319021 Richard Myers, HAIB 9d4413a690271505b624d31951ede818 https://www.encodeproject.org/files/ENCFF000RCK/@@download/ENCFF000RCK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/ee3ba374-fc68-468d-9c0b-a9540e4bd1b8/ENCFF000RCK.fastq.gz low read depth ENCFF000RCL bigWig bigWig raw signal hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 222327008 Richard Myers, HAIB 9679d4cd5a18cde829136792aa4a168c https://www.encodeproject.org/files/ENCFF000RCL/@@download/ENCFF000RCL.bigWig archived s3://encode-public/2012/01/23/c07093d6-5032-4138-bdb1-d74a1ece122d/ENCFF000RCL.bigWig Lab custom hg19 archived low read depth ENCFF000RCM fastq fastq reads ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 single-ended 1404776728 Richard Myers, HAIB 7aefe7cbcc3591895fae217ce281c958 https://www.encodeproject.org/files/ENCFF000RCM/@@download/ENCFF000RCM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/cabf5c36-46e1-475a-b6e5-cd4ae3477fa4/ENCFF000RCM.fastq.gz low read depth ENCFF000RCN bigWig bigWig raw signal hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 133572082 Richard Myers, HAIB 1e806e52a5c47eb8cb07d4431d993d4b https://www.encodeproject.org/files/ENCFF000RCN/@@download/ENCFF000RCN.bigWig archived s3://encode-public/2012/01/23/cfbe0d9d-2381-44a8-b45b-709fceaeda93/ENCFF000RCN.bigWig Lab custom hg19 archived low read depth ENCFF000RCP fastq fastq reads ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 single-ended 1444591627 Richard Myers, HAIB 0e28bb5377075c431c0bf54d69a42863 https://www.encodeproject.org/files/ENCFF000RCP/@@download/ENCFF000RCP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/1621bd9a-20c6-45ec-9dd4-ee51e4352ce4/ENCFF000RCP.fastq.gz low read depth ENCFF000RCT fastq fastq reads ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 single-ended 1261428029 Richard Myers, HAIB d8f705736d0b4e8df8cfd52a3b263316 https://www.encodeproject.org/files/ENCFF000RCT/@@download/ENCFF000RCT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/417d0ccf-d4dd-44ac-99ec-b290ed1a57eb/ENCFF000RCT.fastq.gz low read depth ENCFF188OKO bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000RCK/ 1082724520 ENCODE Processing Pipeline dd611493e4a9d9926f103734fa56deb4 https://www.encodeproject.org/files/ENCFF188OKO/@@download/ENCFF188OKO.bam archived s3://encode-public/2016/11/30/62f47e1c-1270-426a-b82f-a41edab30f2c/ENCFF188OKO.bam ENCODE3 GRCh38 archived low read depth ENCFF229SZJ bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000RCP/, /files/ENCFF643CGH/ 1842652844 ENCODE Processing Pipeline f66daeb334d4d56a5a674e9159cbf971 https://www.encodeproject.org/files/ENCFF229SZJ/@@download/ENCFF229SZJ.bam archived s3://encode-public/2016/11/30/e400b37a-ff8c-4616-a4c6-90610e62195d/ENCFF229SZJ.bam ENCODE3 GRCh38 archived low read depth ENCFF493NIV bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF643CGH/, /files/ENCFF000RCM/ 1796703308 ENCODE Processing Pipeline b71788cf6ee511007590a5d9b0685d0b https://www.encodeproject.org/files/ENCFF493NIV/@@download/ENCFF493NIV.bam archived s3://encode-public/2016/11/30/a2f63d7b-6efd-4711-a0f6-d13db836ee75/ENCFF493NIV.bam ENCODE3 GRCh38 archived low read depth ENCFF418OXF bam bam alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000RCK/ 830222010 ENCODE Processing Pipeline 389fed52629cbcec9310830099c77deb https://www.encodeproject.org/files/ENCFF418OXF/@@download/ENCFF418OXF.bam archived s3://encode-public/2016/11/30/6574d24e-d64b-4cc1-8678-2b8d8b1bfec4/ENCFF418OXF.bam ENCODE3 GRCh38 archived low read depth ENCFF614SSL bam bam unfiltered alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000RCK/ 1080298634 ENCODE Processing Pipeline 4c0a9a027a9d2caec1e62947ee690468 https://www.encodeproject.org/files/ENCFF614SSL/@@download/ENCFF614SSL.bam released s3://encode-public/2016/11/30/f16e2e89-e25f-4cae-a113-238bf6bb0e1f/ENCFF614SSL.bam ENCODE3 hg19 archived low read depth ENCFF660VDB bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF643CGH/, /files/ENCFF000RCT/ 1622625506 ENCODE Processing Pipeline 01d26bc9b9a4630d30c00cc953317122 https://www.encodeproject.org/files/ENCFF660VDB/@@download/ENCFF660VDB.bam archived s3://encode-public/2016/11/30/24555d4b-5ffd-41a8-a52c-6f075bf73864/ENCFF660VDB.bam ENCODE3 GRCh38 archived low read depth ENCFF470KYJ bam bam unfiltered alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF807MUK/, /files/ENCFF000RCM/ 1792078238 ENCODE Processing Pipeline 73f4760ad3ad306dcb388eeb30508766 https://www.encodeproject.org/files/ENCFF470KYJ/@@download/ENCFF470KYJ.bam released s3://encode-public/2016/11/30/005b5156-f681-4b0a-89d3-5153356050cd/ENCFF470KYJ.bam ENCODE3 hg19 archived low read depth ENCFF078LPR bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000RCK/ 830261143 ENCODE Processing Pipeline 8b632921e1b427066e711e62c39b4c4b https://www.encodeproject.org/files/ENCFF078LPR/@@download/ENCFF078LPR.bam released s3://encode-public/2016/11/30/6ca64ac4-6916-4327-9413-ae45f83da7f8/ENCFF078LPR.bam ENCODE3 hg19 archived low read depth ENCFF928YAW bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000RCP/, /files/ENCFF807MUK/ 1291895685 ENCODE Processing Pipeline e113224470f2f53c439fc0187b922375 https://www.encodeproject.org/files/ENCFF928YAW/@@download/ENCFF928YAW.bam released s3://encode-public/2016/11/30/b2391a11-76ad-4a10-b3a0-a6a786f75bad/ENCFF928YAW.bam ENCODE3 hg19 archived low read depth ENCFF328BLL bam bam unfiltered alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF807MUK/, /files/ENCFF000RCT/ 1616965529 ENCODE Processing Pipeline a0b3eb5c4a97c6858d291c738769f5fb https://www.encodeproject.org/files/ENCFF328BLL/@@download/ENCFF328BLL.bam released s3://encode-public/2016/11/30/43ac6d91-64f7-4272-bd8f-322b9e8279a1/ENCFF328BLL.bam ENCODE3 hg19 archived low read depth ENCFF814RKK bam bam alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF643CGH/, /files/ENCFF000RCM/ 1362803460 ENCODE Processing Pipeline d3805187910ae76f7b7956fc66380908 https://www.encodeproject.org/files/ENCFF814RKK/@@download/ENCFF814RKK.bam archived s3://encode-public/2016/11/30/f7c601b3-29f9-4440-8387-bb5c4dea4b89/ENCFF814RKK.bam ENCODE3 GRCh38 archived low read depth ENCFF708ELM bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF807MUK/, /files/ENCFF000RCT/ 1022720242 ENCODE Processing Pipeline db8c8bd7c281dd4ea7fb73d1d5e21d50 https://www.encodeproject.org/files/ENCFF708ELM/@@download/ENCFF708ELM.bam released s3://encode-public/2016/11/30/8f50a09c-f6c4-467f-8682-b434eca179f1/ENCFF708ELM.bam ENCODE3 hg19 archived low read depth ENCFF436ZGI bam bam alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF807MUK/, /files/ENCFF000RCM/ 1362893275 ENCODE Processing Pipeline 1a93d3360d4eaa5f7683fd69e7f645d4 https://www.encodeproject.org/files/ENCFF436ZGI/@@download/ENCFF436ZGI.bam released s3://encode-public/2016/11/30/33d378ef-c659-47e8-bf24-5f773237dcab/ENCFF436ZGI.bam ENCODE3 hg19 archived low read depth ENCFF684POK bam bam unfiltered alignments hg19 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000RCP/, /files/ENCFF807MUK/ 1835980759 ENCODE Processing Pipeline 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8a792d54888d72d76f7763a2063f6986 https://www.encodeproject.org/files/ENCFF671TWU/@@download/ENCFF671TWU.bam archived s3://encode-public/2016/11/30/27463ba8-7d4b-461f-8185-a83e6738b08d/ENCFF671TWU.bam ENCODE3 GRCh38 archived low read depth ENCFF544TDD bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCT/ 1631314899 ENCODE Processing Pipeline 5f1d0baf5c774fb38f9db03d4f73caec https://www.encodeproject.org/files/ENCFF544TDD/@@download/ENCFF544TDD.bam released s3://encode-public/2020/05/28/ae516df2-ded6-4192-a508-3691a14640e8/ENCFF544TDD.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF309OCP bam bam alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCK/ 874278849 ENCODE Processing Pipeline 328211bea95ef7ec326ddbcb4bd7980d https://www.encodeproject.org/files/ENCFF309OCP/@@download/ENCFF309OCP.bam released s3://encode-public/2020/05/28/2a222c88-1cec-4144-86d8-42e4ca38e09c/ENCFF309OCP.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF499VYQ bam bam alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCP/ 1334725108 ENCODE Processing Pipeline a19751f2cf22b2f447d0932876ec6100 https://www.encodeproject.org/files/ENCFF499VYQ/@@download/ENCFF499VYQ.bam released s3://encode-public/2020/05/28/57d5e900-893f-49f7-a45d-9670dc0b08d9/ENCFF499VYQ.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF802NGE bam bam alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 4 4_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCT/ 1078322533 ENCODE Processing Pipeline 64cb5637b8b2a111624f41cad5e8f01e https://www.encodeproject.org/files/ENCFF802NGE/@@download/ENCFF802NGE.bam released s3://encode-public/2020/05/28/a34876d6-7463-4a37-bb3c-5a2e933c1c19/ENCFF802NGE.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF966FMN bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCK/ 1075653394 ENCODE Processing Pipeline 659add9057cc91b1470bb702db4b6001 https://www.encodeproject.org/files/ENCFF966FMN/@@download/ENCFF966FMN.bam released s3://encode-public/2020/05/28/630522d5-2dfd-495e-9e1a-dbb22a9abffe/ENCFF966FMN.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF962YTR bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCP/ 1858158269 ENCODE Processing Pipeline 975b5132bb56273826c26af46cc78c32 https://www.encodeproject.org/files/ENCFF962YTR/@@download/ENCFF962YTR.bam released s3://encode-public/2020/05/28/b9733bee-578a-42ae-ae1d-c14d58e300e8/ENCFF962YTR.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF882OCW bam bam unfiltered alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCM/ 1790593603 ENCODE Processing Pipeline 9fbb58b113222ecd23530d66762bb445 https://www.encodeproject.org/files/ENCFF882OCW/@@download/ENCFF882OCW.bam released s3://encode-public/2020/05/28/a564607c-648e-44e1-91d3-6fd22f54de4d/ENCFF882OCW.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF830FFS bam bam alignments GRCh38 ENCSR000BVW Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA 2012-09-10 ENCODE see document 3 3_1 50 /files/ENCFF110MCL/, /files/ENCFF000RCM/ 1398849421 ENCODE Processing Pipeline a5e7b0ea4cdb4538b5347ffcfce5641a https://www.encodeproject.org/files/ENCFF830FFS/@@download/ENCFF830FFS.bam released s3://encode-public/2020/05/28/5db1076f-5355-41a8-8f51-e5d3a0df8bdc/ENCFF830FFS.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF001HLF bam bam alignments hg19 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HLR/ 1009876789 John Stamatoyannopoulos, UW 6ad1808f15353419a812ec8052f81542 https://www.encodeproject.org/files/ENCFF001HLF/@@download/ENCFF001HLF.bam archived s3://encode-public/2011/06/25/1cf4b914-7464-4225-a66c-cc85051cb202/ENCFF001HLF.bam Lab custom hg19 archived low read length ENCFF001HLH bigWig bigWig raw signal hg19 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HLF/ 204140635 John Stamatoyannopoulos, UW e26b7b5b3da10b732b489ab6ebec1374 https://www.encodeproject.org/files/ENCFF001HLH/@@download/ENCFF001HLH.bigWig archived s3://encode-public/2011/06/25/4badb01c-2d25-4662-9da0-431ff96f5af4/ENCFF001HLH.bigWig Lab custom hg19 archived low read length ENCFF001HLR fastq fastq reads ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1068900341 John Stamatoyannopoulos, UW 03b02edcf1173d877dbf83cca973d500 https://www.encodeproject.org/files/ENCFF001HLR/@@download/ENCFF001HLR.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/3272b4bc-67b1-4ce6-b8e0-6e6c427398dc/ENCFF001HLR.fastq.gz low read length ENCFF667PKS bam bam unfiltered alignments GRCh38 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HLR/, /files/ENCFF643CGH/ 1276931620 ENCODE Processing Pipeline 1769c9d25a06a9cef7d8447984a5ca55 https://www.encodeproject.org/files/ENCFF667PKS/@@download/ENCFF667PKS.bam released s3://encode-public/2016/08/09/c14b6319-2b28-49ee-8d4a-a08b59d563d1/ENCFF667PKS.bam ENCODE3 GRCh38 archived low read length ENCFF227BBG bam bam alignments GRCh38 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HLR/, /files/ENCFF643CGH/ 928607987 ENCODE Processing Pipeline 2dece9956d3ca17010f9a3617474f24b https://www.encodeproject.org/files/ENCFF227BBG/@@download/ENCFF227BBG.bam released s3://encode-public/2016/08/09/65044205-0704-41ee-bf70-a14a49f8cecc/ENCFF227BBG.bam ENCODE3 GRCh38 archived low read length ENCFF458CWA bam bam unfiltered alignments hg19 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HLR/, /files/ENCFF807MUK/ 1270352256 ENCODE Processing Pipeline b5523045841c4034865cc9b833161002 https://www.encodeproject.org/files/ENCFF458CWA/@@download/ENCFF458CWA.bam released s3://encode-public/2016/11/13/d6dc5d59-b950-4c5c-9c7f-44e96f861480/ENCFF458CWA.bam ENCODE3 hg19 archived low read length ENCFF783NTR bam bam alignments hg19 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HLR/, /files/ENCFF807MUK/ 928896051 ENCODE Processing Pipeline f418184276f3ff151f50203d23872109 https://www.encodeproject.org/files/ENCFF783NTR/@@download/ENCFF783NTR.bam released s3://encode-public/2016/11/13/6c5b90f1-864a-4d6b-a32b-d906b30a1b9f/ENCFF783NTR.bam ENCODE3 hg19 archived low read length ENCFF953FYN bam bam unfiltered alignments GRCh38 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HLR/, /files/ENCFF110MCL/ 1256038824 ENCODE Processing Pipeline 28e2457d86b0f4f9fe0b6dccdf314109 https://www.encodeproject.org/files/ENCFF953FYN/@@download/ENCFF953FYN.bam released s3://encode-public/2020/09/03/b3f6747e-0d93-4a22-a960-d2f5a9d90c15/ENCFF953FYN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF671ULZ bam bam alignments GRCh38 ENCSR000DTM Control ChIP-seq /human-donors/ENCDO097AAA/ CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HLR/, /files/ENCFF110MCL/ 1005445130 ENCODE Processing Pipeline 7dd35e619380bf54913b0eb326f6e0fb https://www.encodeproject.org/files/ENCFF671ULZ/@@download/ENCFF671ULZ.bam released s3://encode-public/2020/09/03/82ffe138-68c2-494d-a9e2-dcd9475b6b79/ENCFF671ULZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000SDS bam bam alignments hg19 ENCSR000DNJ Control ChIP-seq UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 35 864770942 Vishwanath Iyer, UTA 10e74ec3f6a11912efad06d9e288294b https://www.encodeproject.org/files/ENCFF000SDS/@@download/ENCFF000SDS.bam archived s3://encode-public/2012/07/26/14185ff9-a8fe-46e0-abb9-710f34d06269/ENCFF000SDS.bam Lab custom hg19 archived insufficient read depth ENCFF000SDT bigWig bigWig signal hg19 ENCSR000DNJ Control ChIP-seq UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 4485485369 Vishwanath Iyer, UTA 7532deca62e94ff20d2d4baeb387b1e9 https://www.encodeproject.org/files/ENCFF000SDT/@@download/ENCFF000SDT.bigWig archived s3://encode-public/2012/07/26/ff019c74-aefe-42f5-a508-6cce09e55f11/ENCFF000SDT.bigWig Lab custom hg19 archived insufficient read depth ENCFF000SEH fastq fastq reads ENCSR000DNJ Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 1553296565 Vishwanath Iyer, UTA d8dc9458e16a1ace359c21fba6e63f31 https://www.encodeproject.org/files/ENCFF000SEH/@@download/ENCFF000SEH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/40ed11ba-c51f-4ba4-9e2a-cc17139a7394/ENCFF000SEH.fastq.gz insufficient read depth ENCFF787HFY bam bam unfiltered alignments GRCh38 ENCSR000DNJ Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000SEH/ 1751222708 ENCODE Processing Pipeline 2faa6cfa2a5b2ad68843b2306fb92813 https://www.encodeproject.org/files/ENCFF787HFY/@@download/ENCFF787HFY.bam released s3://encode-public/2017/04/09/f7086a23-19f1-4f85-91b5-215aba72ac92/ENCFF787HFY.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF737EOY bam bam alignments hg19 ENCSR000DNJ Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000SEH/ 626064825 ENCODE Processing Pipeline 1f31137ef99c4e3c445013b260c01f70 https://www.encodeproject.org/files/ENCFF737EOY/@@download/ENCFF737EOY.bam released s3://encode-public/2017/04/09/9edbbd14-723c-4328-b885-482f23245415/ENCFF737EOY.bam ENCODE3 hg19 archived insufficient read depth ENCFF727VHC bam bam unfiltered alignments hg19 ENCSR000DNJ Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000SEH/ 1747996793 ENCODE Processing Pipeline 6b8c907d39da0b7d4e56322053360180 https://www.encodeproject.org/files/ENCFF727VHC/@@download/ENCFF727VHC.bam released s3://encode-public/2017/04/09/0d6586b2-817a-4bae-95ad-a9dd25a2780a/ENCFF727VHC.bam ENCODE3 hg19 archived insufficient read depth ENCFF348JCV bam bam alignments GRCh38 ENCSR000DNJ Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000SEH/ 626090957 ENCODE Processing Pipeline 990ba6aa057003429de83b9141b2c9b9 https://www.encodeproject.org/files/ENCFF348JCV/@@download/ENCFF348JCV.bam released s3://encode-public/2017/04/09/11ffdccd-14ab-42b8-91e7-b73c9aada722/ENCFF348JCV.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF197ZAR bam bam unfiltered alignments GRCh38 ENCSR000DNJ Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000SEH/, /files/ENCFF110MCL/ 1788116779 ENCODE Processing Pipeline 74b082d1a4395f743c09fe832c69beed https://www.encodeproject.org/files/ENCFF197ZAR/@@download/ENCFF197ZAR.bam released s3://encode-public/2020/08/06/ec7d26c8-fbd4-458e-9961-bb69fdb719e3/ENCFF197ZAR.bam ENCODE4 GRCh38 released insufficient read depth ENCFF541FOB bam bam alignments GRCh38 ENCSR000DNJ Control ChIP-seq /human-donors/ENCDO310AAA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000SEH/, /files/ENCFF110MCL/ 594621167 ENCODE Processing Pipeline a2d968623629f5094a1a3785f2e72418 https://www.encodeproject.org/files/ENCFF541FOB/@@download/ENCFF541FOB.bam released s3://encode-public/2020/08/06/bd445605-83bd-41be-8202-193104985d83/ENCFF541FOB.bam ENCODE4 GRCh38 released insufficient read depth ENCFF000ZPD bam bam alignments hg19 ENCSR000EXY Control ChIP-seq EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 32 537491507 Peggy Farnham, USC 54e54cf92f109e5811846d4d66eeff7b https://www.encodeproject.org/files/ENCFF000ZPD/@@download/ENCFF000ZPD.bam archived s3://encode-public/2010/12/06/d78e1be7-c29a-41aa-b120-5dbafb2a64dd/ENCFF000ZPD.bam Lab custom hg19 archived low read depth, low read length ENCFF000ZPE bigWig bigWig signal hg19 ENCSR000EXY Control ChIP-seq EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 360825626 Peggy Farnham, USC 0e416912ee86143bcd8997b092c623e8 https://www.encodeproject.org/files/ENCFF000ZPE/@@download/ENCFF000ZPE.bigWig archived s3://encode-public/2010/12/06/ffeb943b-a1aa-482f-97f6-010a0f2b3898/ENCFF000ZPE.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000ZPM fastq fastq reads ENCSR000EXY Control ChIP-seq /human-donors/ENCDO000ADJ/ EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 938165403 Peggy Farnham, USC 94ce01964257c8f7c58d1690454e1cfb https://www.encodeproject.org/files/ENCFF000ZPM/@@download/ENCFF000ZPM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/7082874e-c1fd-429b-8ad7-9ef5836e7dc7/ENCFF000ZPM.fastq.gz low read depth, low read length ENCFF971KPK bam bam unfiltered alignments GRCh38 ENCSR000EXY Control ChIP-seq /human-donors/ENCDO000ADJ/ EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPM/, /files/ENCFF643CGH/ 1112141045 ENCODE Processing Pipeline f61d074702f1685eee4e3d9d4cc7f4cd https://www.encodeproject.org/files/ENCFF971KPK/@@download/ENCFF971KPK.bam released s3://encode-public/2016/10/26/9890d67a-c1ed-4431-af62-d85a2ed6e013/ENCFF971KPK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF275RMZ bam bam alignments GRCh38 ENCSR000EXY Control ChIP-seq /human-donors/ENCDO000ADJ/ EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPM/, /files/ENCFF643CGH/ 615656126 ENCODE Processing Pipeline 11dafec02846434e07fd41ae5159ea98 https://www.encodeproject.org/files/ENCFF275RMZ/@@download/ENCFF275RMZ.bam released s3://encode-public/2016/10/26/1822491a-a8c5-4640-9f7e-271b64f14681/ENCFF275RMZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF259YZQ bam bam unfiltered alignments hg19 ENCSR000EXY Control ChIP-seq /human-donors/ENCDO000ADJ/ EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPM/, /files/ENCFF807MUK/ 1108395658 ENCODE Processing Pipeline 503a48f1eb71d1c5db925d4075ce5270 https://www.encodeproject.org/files/ENCFF259YZQ/@@download/ENCFF259YZQ.bam released s3://encode-public/2016/11/13/21c48021-1f9e-42f4-b769-474d2c600892/ENCFF259YZQ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF835ZVB bam bam alignments hg19 ENCSR000EXY Control ChIP-seq /human-donors/ENCDO000ADJ/ EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPM/, /files/ENCFF807MUK/ 614230899 ENCODE Processing Pipeline b88290541b4e99f278af959cbb97677a https://www.encodeproject.org/files/ENCFF835ZVB/@@download/ENCFF835ZVB.bam released s3://encode-public/2016/11/13/94193453-2f99-4115-86e0-0fd0239bd9af/ENCFF835ZVB.bam ENCODE3 hg19 archived low read depth, low read length ENCFF795RGN bam bam unfiltered alignments GRCh38 ENCSR000EXY Control ChIP-seq /human-donors/ENCDO000ADJ/ EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPM/, /files/ENCFF110MCL/ 1093950342 ENCODE Processing Pipeline d8a6873a0a9a1597a90306200c253132 https://www.encodeproject.org/files/ENCFF795RGN/@@download/ENCFF795RGN.bam released s3://encode-public/2020/10/27/a0fd73a0-d5a3-4e9d-baf3-07f500028882/ENCFF795RGN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF659BSD bam bam alignments GRCh38 ENCSR000EXY Control ChIP-seq /human-donors/ENCDO000ADJ/ EFO:0002324 Raji cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPM/, /files/ENCFF110MCL/ 676128005 ENCODE Processing Pipeline d0831f0dddc8a931f4e8bc33c4e849b6 https://www.encodeproject.org/files/ENCFF659BSD/@@download/ENCFF659BSD.bam released s3://encode-public/2020/10/27/576de8e9-da55-425d-9939-06b77f5f06e0/ENCFF659BSD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF340CSY bam bam unfiltered alignments hg19 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF002BAA/, /files/ENCFF807MUK/, /files/ENCFF002AVJ/ 4631834711 ENCODE Processing Pipeline 14b777a5a3845b70d2c9a0f5563f22ef https://www.encodeproject.org/files/ENCFF340CSY/@@download/ENCFF340CSY.bam released s3://encode-public/2018/02/21/cd7c95ec-59a0-411d-a79a-ec22c67b9e45/ENCFF340CSY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF882PJX bam bam unfiltered alignments hg19 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1, 2_2 36 /files/ENCFF807MUK/, /files/ENCFF002BCA/, /files/ENCFF002AYG/ 3553632214 ENCODE Processing Pipeline 518c7f760efee97d155c03a07d6586d4 https://www.encodeproject.org/files/ENCFF882PJX/@@download/ENCFF882PJX.bam released s3://encode-public/2018/02/21/8496894a-bde6-49da-9ff4-564f0aa0dc8b/ENCFF882PJX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF002AVJ fastq fastq reads ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1 36 single-ended 2259462567 Bradley Bernstein, Broad 54d01529dee2d8130a54f7decffa97f5 SRA:SRR4235582 https://www.encodeproject.org/files/ENCFF002AVJ/@@download/ENCFF002AVJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/19/ddc4e954-6810-4df3-97e4-6c54274096da/ENCFF002AVJ.fastq.gz mild to moderate bottlenecking, low read length ENCFF002AYG fastq fastq reads ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_2 36 single-ended 2016482769 Bradley Bernstein, Broad cb8d2b00ad3ee1d3226a36b62cd5712d SRA:SRR4235579 https://www.encodeproject.org/files/ENCFF002AYG/@@download/ENCFF002AYG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/20/033cf689-a5b0-4ec1-bf30-609bc4267dc8/ENCFF002AYG.fastq.gz mild to moderate bottlenecking, low read length ENCFF002BAA fastq fastq reads ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_2 36 single-ended 1523883525 Bradley Bernstein, Broad b1bbfa54d0167e287e801b174f3ef1cd SRA:SRR4235583 https://www.encodeproject.org/files/ENCFF002BAA/@@download/ENCFF002BAA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/20/96ca803e-8d4e-4cce-b43d-3089c1970976/ENCFF002BAA.fastq.gz mild to moderate bottlenecking, low read length ENCFF002BCA fastq fastq reads ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1 36 single-ended 742928787 Bradley Bernstein, Broad 8ba82f8c1922165415be0c6e3eb0e679 SRA:SRR4235580 https://www.encodeproject.org/files/ENCFF002BCA/@@download/ENCFF002BCA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/20/bd5dfa2a-f83e-42ad-87ac-ab99c16aca6c/ENCFF002BCA.fastq.gz mild to moderate bottlenecking, low read length ENCFF004XDI bam bam alignments hg19 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF002BAA/, /files/ENCFF807MUK/, /files/ENCFF002AVJ/ 2562535127 ENCODE Processing Pipeline 86a89d0c1c2762238de91f92e8ebc6fa https://www.encodeproject.org/files/ENCFF004XDI/@@download/ENCFF004XDI.bam released s3://encode-public/2015/10/28/5278c72e-cdea-4454-9c5b-17265c138174/ENCFF004XDI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF602DKP bam bam alignments hg19 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1, 2_2 36 /files/ENCFF807MUK/, /files/ENCFF002BCA/, /files/ENCFF002AYG/ 2148128881 ENCODE Processing Pipeline f1322ad740c3c72274945ca62f0eccb4 https://www.encodeproject.org/files/ENCFF602DKP/@@download/ENCFF602DKP.bam released s3://encode-public/2015/10/28/aa872413-7578-44fe-a0ba-534dfa08ef86/ENCFF602DKP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF669SXS fastq fastq reads ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 3 3_1 36 single-ended 1423882061 Bradley Bernstein, Broad 2e2086363a4e29d5e7de9640cea6f3e2 SRA:SRR4235581 https://www.encodeproject.org/files/ENCFF669SXS/@@download/ENCFF669SXS.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/02/24/d495340c-cb7e-4c18-adb7-9bbef1714d23/ENCFF669SXS.fastq.gz mild to moderate bottlenecking, low read length ENCFF457XHK bam bam unfiltered alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 3 3_1 36 /files/ENCFF669SXS/, /files/ENCFF643CGH/ 1997466297 ENCODE Processing Pipeline a57263c116bbd67743c68ab34836f4bb https://www.encodeproject.org/files/ENCFF457XHK/@@download/ENCFF457XHK.bam archived s3://encode-public/2016/05/06/25c008c5-2de9-4d0b-9b9f-59a0ddefbba0/ENCFF457XHK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF566TWZ bam bam unfiltered alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1, 2_2 36 /files/ENCFF643CGH/, /files/ENCFF002BCA/, /files/ENCFF002AYG/ 3572181924 ENCODE Processing Pipeline 4ec535e15f3e703908fbfe0e2dfac779 https://www.encodeproject.org/files/ENCFF566TWZ/@@download/ENCFF566TWZ.bam released s3://encode-public/2016/05/06/a53730b1-6e1a-4e65-b3d1-7f8af6809360/ENCFF566TWZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF998PVM bam bam unfiltered alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF002BAA/, /files/ENCFF643CGH/, /files/ENCFF002AVJ/ 4654845093 ENCODE Processing Pipeline d700e20105acdd7e8bd9d132334d5d09 https://www.encodeproject.org/files/ENCFF998PVM/@@download/ENCFF998PVM.bam released s3://encode-public/2016/05/06/397ffadf-5b7b-4fd5-a917-c74b64185588/ENCFF998PVM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF185AJC bam bam alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 3 3_1 36 /files/ENCFF669SXS/, /files/ENCFF643CGH/ 1361115259 ENCODE Processing Pipeline 46eb72292490bf8070536501512b244f https://www.encodeproject.org/files/ENCFF185AJC/@@download/ENCFF185AJC.bam archived s3://encode-public/2016/05/06/63e2bc76-87d4-4bab-8af8-33bca7d4d8bf/ENCFF185AJC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF537BWA bam bam alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1, 2_2 36 /files/ENCFF643CGH/, /files/ENCFF002BCA/, /files/ENCFF002AYG/ 2147562878 ENCODE Processing Pipeline 165d907d9d9f474afa54cbcc74223b1d https://www.encodeproject.org/files/ENCFF537BWA/@@download/ENCFF537BWA.bam released s3://encode-public/2016/05/06/3fab5962-b5ee-4812-80c6-cbb3ba03d5a5/ENCFF537BWA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF046QZN bam bam alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF002BAA/, /files/ENCFF643CGH/, /files/ENCFF002AVJ/ 2562011245 ENCODE Processing Pipeline e6c39637640c2c8c0a3657c4f144623a https://www.encodeproject.org/files/ENCFF046QZN/@@download/ENCFF046QZN.bam released s3://encode-public/2016/05/06/e8cb0a37-3b2b-4872-9188-009ed9d4af73/ENCFF046QZN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF310BEU bam bam unfiltered alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF002BAA/, /files/ENCFF643CGH/, /files/ENCFF002AVJ/ 4654845132 ENCODE Processing Pipeline 20e880014b096a8aa09364d4706cfe99 https://www.encodeproject.org/files/ENCFF310BEU/@@download/ENCFF310BEU.bam released s3://encode-public/2020/02/18/50a8e0b9-6583-46ec-bef5-2f38c483691f/ENCFF310BEU.bam mild to moderate bottlenecking, low read length ENCFF469ZGZ bam bam unfiltered alignments hg19 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1, 2_2 36 /files/ENCFF807MUK/, /files/ENCFF002BCA/, /files/ENCFF002AYG/ 3553632243 ENCODE Processing Pipeline 2336af96b375873084e0a27b402571b1 https://www.encodeproject.org/files/ENCFF469ZGZ/@@download/ENCFF469ZGZ.bam released s3://encode-public/2020/02/18/ca126f1f-48a1-42dc-b0c0-0849afe8b035/ENCFF469ZGZ.bam mild to moderate bottlenecking, low read length ENCFF139BHA bam bam alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1, 2_2 36 /files/ENCFF002BCA/, /files/ENCFF002AYG/, /files/ENCFF110MCL/ 2336487887 ENCODE Processing Pipeline dcc936f97e29f9d7f2de75e72e6989da https://www.encodeproject.org/files/ENCFF139BHA/@@download/ENCFF139BHA.bam released s3://encode-public/2020/08/20/a7f34922-066e-4c30-9224-80992693dfc5/ENCFF139BHA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF997ILJ bam bam unfiltered alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF002AVJ/, /files/ENCFF002BAA/, /files/ENCFF110MCL/ 4547240390 ENCODE Processing Pipeline 640392530a8a0ab87dae0e18d435b767 https://www.encodeproject.org/files/ENCFF997ILJ/@@download/ENCFF997ILJ.bam released s3://encode-public/2020/08/20/53b3cab5-7b69-4189-a4ef-82089e6bc82f/ENCFF997ILJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF976GTI bam bam unfiltered alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 2 2_1, 2_2 36 /files/ENCFF002BCA/, /files/ENCFF002AYG/, /files/ENCFF110MCL/ 3470900505 ENCODE Processing Pipeline 1a693849c32ed43ade986eaa96a54d1a https://www.encodeproject.org/files/ENCFF976GTI/@@download/ENCFF976GTI.bam released s3://encode-public/2020/08/20/72f680cc-608b-4a52-931c-5eb45763d9ec/ENCFF976GTI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF317ZWU bam bam alignments GRCh38 ENCSR063AUO Control ChIP-seq /human-donors/ENCDO351AAA/ EFO:0006711 OCI-LY7 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-800 1 1_1, 1_2 36 /files/ENCFF002AVJ/, /files/ENCFF002BAA/, /files/ENCFF110MCL/ 2771933400 ENCODE Processing Pipeline c63a01dc88f4cb14522721e24a0d89c8 https://www.encodeproject.org/files/ENCFF317ZWU/@@download/ENCFF317ZWU.bam released s3://encode-public/2020/08/20/f9bb9929-f6be-4855-8b7d-a3c65c066924/ENCFF317ZWU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF000OJK bam bam alignments hg19 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJU/ 954974459 Richard Myers, HAIB 2b93a6260939b6a222998b0dbe1d0735 https://www.encodeproject.org/files/ENCFF000OJK/@@download/ENCFF000OJK.bam archived s3://encode-public/2012/01/23/7ae14442-2f37-48b7-bd0d-03accc6d3d14/ENCFF000OJK.bam Lab custom hg19 archived low read depth, low read length ENCFF000OJN bigWig bigWig raw signal hg19 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 12432935 Richard Myers, HAIB 0beb692c35bf856b9a8772140be97fac https://www.encodeproject.org/files/ENCFF000OJN/@@download/ENCFF000OJN.bigWig archived s3://encode-public/2012/01/23/cc7816a0-6a3c-4489-bdb4-bb73142a2b0c/ENCFF000OJN.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000OJU fastq fastq reads ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1041358459 Richard Myers, HAIB 0644234ed4f9ca262013d98845eb5f8a https://www.encodeproject.org/files/ENCFF000OJU/@@download/ENCFF000OJU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/ef61134e-130a-4210-a605-58af8175544f/ENCFF000OJU.fastq.gz low read depth, low read length ENCFF962KBC bam bam unfiltered alignments GRCh38 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000OJU/ 1329105632 ENCODE Processing Pipeline b7ba8a5180789796d275efc6228a9acb https://www.encodeproject.org/files/ENCFF962KBC/@@download/ENCFF962KBC.bam released s3://encode-public/2016/10/26/b52ef44f-ac17-4e36-93ae-d6a73f077cac/ENCFF962KBC.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF857FLV bam bam alignments GRCh38 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000OJU/ 730564705 ENCODE Processing Pipeline df3fac64049421abaae7eecca5cf5338 https://www.encodeproject.org/files/ENCFF857FLV/@@download/ENCFF857FLV.bam released s3://encode-public/2016/10/26/5131dba7-e33a-4a12-9ac2-56371a5400f7/ENCFF857FLV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF813KQE bam bam unfiltered alignments hg19 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OJU/ 1326122192 ENCODE Processing Pipeline bc3e714a5c572764742c1ed013438c4d https://www.encodeproject.org/files/ENCFF813KQE/@@download/ENCFF813KQE.bam released s3://encode-public/2016/11/13/fbac9657-63f5-48a0-b9be-b1841481f65d/ENCFF813KQE.bam ENCODE3 hg19 archived low read depth, low read length ENCFF864ASU bam bam alignments hg19 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OJU/ 723130207 ENCODE Processing Pipeline 63a6ae48e7c4453ae9ad81774b7601f8 https://www.encodeproject.org/files/ENCFF864ASU/@@download/ENCFF864ASU.bam released s3://encode-public/2016/11/13/62f1f018-a343-43a9-b060-14d781872446/ENCFF864ASU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF471UTM bam bam unfiltered alignments GRCh38 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJU/, /files/ENCFF110MCL/ 1303311763 ENCODE Processing Pipeline 547bee25a348cbbb44a6a05b589c8926 https://www.encodeproject.org/files/ENCFF471UTM/@@download/ENCFF471UTM.bam released s3://encode-public/2020/10/28/413b2cb6-d878-4fe2-8f47-31618cb23e9f/ENCFF471UTM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF301IVR bam bam alignments GRCh38 ENCSR000BIH Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJU/, /files/ENCFF110MCL/ 822035178 ENCODE Processing Pipeline 63ba8763455d167af8b63bc3ff9dc145 https://www.encodeproject.org/files/ENCFF301IVR/@@download/ENCFF301IVR.bam released s3://encode-public/2020/10/28/5572b8e4-ce7e-4cbb-87eb-0e0d357b6dce/ENCFF301IVR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF413RQG fastq fastq reads ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 single-ended 1187416851 Bradley Bernstein, Broad d79af9562914fd98e27c4a4b56cdf982 SRA:SRR4235597 https://www.encodeproject.org/files/ENCFF413RQG/@@download/ENCFF413RQG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/27/5a38a84e-ffe6-4f83-bf6a-1f730e16f835/ENCFF413RQG.fastq.gz mixed run types, low read length, mixed read lengths ENCFF057BHM bam bam unfiltered alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF796ERZ/, /files/ENCFF957PGR/, /files/ENCFF110MCL/, /files/ENCFF048ZOQ/ 2972435382 ENCODE Processing Pipeline 2d53a74d9c4b273f0045994d8b83a159 https://www.encodeproject.org/files/ENCFF057BHM/@@download/ENCFF057BHM.bam released s3://encode-public/2020/09/17/1a828c79-9bbe-44a5-a67b-2b0087cb2327/ENCFF057BHM.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF048ZOQ fastq fastq reads ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 paired-ended 1 /files/ENCFF827YXC/ 1763953860 Bradley Bernstein, Broad 20427a1562a5c26f9320bb15419efa6e SRA:SRR4235598 https://www.encodeproject.org/files/ENCFF048ZOQ/@@download/ENCFF048ZOQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/18/defa7bae-8904-4c25-a38a-690cf7222cd6/ENCFF048ZOQ.fastq.gz mixed run types, low read length, mixed read lengths ENCFF827YXC fastq fastq reads ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 paired-ended 2 /files/ENCFF048ZOQ/ 1777575840 Bradley Bernstein, Broad 8a1b1abed8946df0682085f8d271dfca SRA:SRR4235598 https://www.encodeproject.org/files/ENCFF827YXC/@@download/ENCFF827YXC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/12/18/7b6ae75e-331b-4721-b328-43ed9d409ad4/ENCFF827YXC.fastq.gz mixed run types, low read length, mixed read lengths ENCFF098SJQ bam bam alignments hg19 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 /files/ENCFF413RQG/, /files/ENCFF807MUK/ 1110445406 ENCODE Processing Pipeline b6f9f64dfa95935c3c1d280d39381de6 https://www.encodeproject.org/files/ENCFF098SJQ/@@download/ENCFF098SJQ.bam released s3://encode-public/2016/01/07/cc3cb744-b1be-40d7-94f9-f477011c2785/ENCFF098SJQ.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF745NAF bam bam unfiltered alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 /files/ENCFF413RQG/, /files/ENCFF643CGH/ 1565416943 ENCODE Processing Pipeline dbef10a729c21ea8a78e2c2431574e50 https://www.encodeproject.org/files/ENCFF745NAF/@@download/ENCFF745NAF.bam released s3://encode-public/2016/08/09/d459508d-58d9-44f5-bcd2-5e2848c4bbc7/ENCFF745NAF.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF957PGR fastq fastq reads ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 single-ended 1284978794 Bradley Bernstein, Broad bc5f357048a4a7e7830af0ed94a69ea6 https://www.encodeproject.org/files/ENCFF957PGR/@@download/ENCFF957PGR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/f767ceec-44c1-4a51-a268-42a4d3a4f564/ENCFF957PGR.fastq.gz mixed run types, low read length, mixed read lengths ENCFF796ERZ fastq fastq reads ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 single-ended 1278372102 Bradley Bernstein, Broad 655071a13e55d092efbddd898e2fb527 https://www.encodeproject.org/files/ENCFF796ERZ/@@download/ENCFF796ERZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/2e96427c-f0f3-430d-a193-8bc7388fe32d/ENCFF796ERZ.fastq.gz mixed run types, low read length, mixed read lengths ENCFF064LQH bam bam alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF048ZOQ/, /files/ENCFF643CGH/, /files/ENCFF957PGR/, /files/ENCFF796ERZ/ 2019053483 ENCODE Processing Pipeline 1d4e7434980d93d85a22eecd549e3f61 https://www.encodeproject.org/files/ENCFF064LQH/@@download/ENCFF064LQH.bam released s3://encode-public/2016/11/15/a1789969-635a-4c10-8492-125b3fd65a2e/ENCFF064LQH.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF373OZW bam bam unfiltered alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF048ZOQ/, /files/ENCFF643CGH/, /files/ENCFF957PGR/, /files/ENCFF796ERZ/ 3025851073 ENCODE Processing Pipeline 0f38bf3462bf5889e40633b3aa2ae41d https://www.encodeproject.org/files/ENCFF373OZW/@@download/ENCFF373OZW.bam released s3://encode-public/2016/11/15/09c14de6-1f9d-4668-abf8-ce0e835601fc/ENCFF373OZW.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF420OJT bam bam alignments hg19 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF048ZOQ/, /files/ENCFF807MUK/, /files/ENCFF957PGR/, /files/ENCFF796ERZ/ 2019225469 ENCODE Processing Pipeline 2118880b8b59a48b8501ae3cb6cf1a11 https://www.encodeproject.org/files/ENCFF420OJT/@@download/ENCFF420OJT.bam released s3://encode-public/2016/11/15/6c946048-bc41-48d3-bce9-b9dccb97eace/ENCFF420OJT.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF573WFD bam bam unfiltered alignments hg19 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF048ZOQ/, /files/ENCFF807MUK/, /files/ENCFF957PGR/, /files/ENCFF796ERZ/ 3005427433 ENCODE Processing Pipeline 084043f125be4b968767a77cb09ee579 https://www.encodeproject.org/files/ENCFF573WFD/@@download/ENCFF573WFD.bam released s3://encode-public/2016/11/15/74fa1aa6-9653-4235-a464-e9ac31af1280/ENCFF573WFD.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF889VIV bam bam alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 /files/ENCFF413RQG/, /files/ENCFF643CGH/ 1110274086 ENCODE Processing Pipeline 277a4f57c5daf608fb32f7b0c2fcccb2 https://www.encodeproject.org/files/ENCFF889VIV/@@download/ENCFF889VIV.bam released s3://encode-public/2016/11/18/5bcfec2a-0a2c-41f3-b7c9-1a6c8720f3bf/ENCFF889VIV.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF729GVW bam bam unfiltered alignments hg19 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 /files/ENCFF413RQG/, /files/ENCFF807MUK/ 1555724775 ENCODE Processing Pipeline 5bef98f865054f7a9ee7f35bbd3971a5 https://www.encodeproject.org/files/ENCFF729GVW/@@download/ENCFF729GVW.bam released s3://encode-public/2016/12/02/944ff200-af3a-4612-8042-73a845d9e094/ENCFF729GVW.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF539DNR bam bam alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF796ERZ/, /files/ENCFF957PGR/, /files/ENCFF110MCL/, /files/ENCFF048ZOQ/ 2202516087 ENCODE Processing Pipeline 2be60c5662b78e0f5f160edab8604754 https://www.encodeproject.org/files/ENCFF539DNR/@@download/ENCFF539DNR.bam released s3://encode-public/2020/09/17/365e74bc-697f-4895-bf77-a9e352e6b761/ENCFF539DNR.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF167GNJ bam bam unfiltered alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 /files/ENCFF413RQG/, /files/ENCFF110MCL/ 1526896635 ENCODE Processing Pipeline 6770fa2b14c4730c8c091d8337e85dfb https://www.encodeproject.org/files/ENCFF167GNJ/@@download/ENCFF167GNJ.bam released s3://encode-public/2020/09/17/f249c6b2-b232-4280-81c1-b8e668dcd18a/ENCFF167GNJ.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF209VII bam bam alignments GRCh38 ENCSR198WIH Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 /files/ENCFF413RQG/, /files/ENCFF110MCL/ 1207208014 ENCODE Processing Pipeline cb52a14a2c14edd60c2ce12886e21db6 https://www.encodeproject.org/files/ENCFF209VII/@@download/ENCFF209VII.bam released s3://encode-public/2020/09/17/97d2a49f-2dde-419f-9374-da824170c2f6/ENCFF209VII.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF020FOL fastq fastq reads ENCSR842PNM Control ChIP-seq /worm-donors/ENCDO902QDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176372/'], '@type': ['Target', 'Item'], 'name': 'hlh-4-celegans', 'label': 'hlh-4', '@id': '/targets/hlh-4-celegans/', 'title': 'hlh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b62ec0f3-c697-4915-96a6-3af47089bbb2', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 1792293968 Kevin White, UChicago e54c8ef909bc1c3e5b2582e82ed684fb https://www.encodeproject.org/files/ENCFF020FOL/@@download/ENCFF020FOL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/7a847be3-4d9a-49bb-b73b-fb765006fba4/ENCFF020FOL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF185HMM bam bam alignments ce10 ENCSR842PNM Control ChIP-seq /worm-donors/ENCDO902QDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176372/'], '@type': ['Target', 'Item'], 'name': 'hlh-4-celegans', 'label': 'hlh-4', '@id': '/targets/hlh-4-celegans/', 'title': 'hlh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b62ec0f3-c697-4915-96a6-3af47089bbb2', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF185HMM/ 9994254 Kevin White, UChicago 404360895677a5b87239830d391608e9 https://www.encodeproject.org/files/ENCFF804GLG/@@download/ENCFF804GLG.bigWig released s3://encode-public/2015/10/02/a3fcd8b1-741b-424e-802d-20532f5f6aed/ENCFF804GLG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF336GGM bigWig bigWig read-depth normalized signal ce10 ENCSR842PNM Control ChIP-seq /worm-donors/ENCDO902QDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176372/'], '@type': ['Target', 'Item'], 'name': 'hlh-4-celegans', 'label': 'hlh-4', '@id': '/targets/hlh-4-celegans/', 'title': 'hlh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b62ec0f3-c697-4915-96a6-3af47089bbb2', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF185HMM/ 10065004 Kevin White, UChicago bab5e690cdcbe8be6d8231342fe2661a https://www.encodeproject.org/files/ENCFF336GGM/@@download/ENCFF336GGM.bigWig released s3://encode-public/2015/10/02/f7c7dc2f-192f-4af5-8508-8d59b6833add/ENCFF336GGM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF606GBQ bam bam alignments ce11 ENCSR842PNM Control ChIP-seq /worm-donors/ENCDO902QDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176372/'], '@type': ['Target', 'Item'], 'name': 'hlh-4-celegans', 'label': 'hlh-4', '@id': '/targets/hlh-4-celegans/', 'title': 'hlh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b62ec0f3-c697-4915-96a6-3af47089bbb2', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF020FOL/ 2525720910 Kevin White, UChicago 6da0eabd988e72f2b054ab6986068dd8 https://www.encodeproject.org/files/ENCFF606GBQ/@@download/ENCFF606GBQ.bam released s3://encode-public/2016/01/17/2e96ec14-6086-4e68-b5e4-d59b01761ccd/ENCFF606GBQ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF752NOG bigWig bigWig signal of unique reads ce11 ENCSR842PNM Control ChIP-seq /worm-donors/ENCDO902QDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176372/'], '@type': ['Target', 'Item'], 'name': 'hlh-4-celegans', 'label': 'hlh-4', '@id': '/targets/hlh-4-celegans/', 'title': 'hlh-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b62ec0f3-c697-4915-96a6-3af47089bbb2', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF606GBQ/ 9993830 Kevin White, UChicago 97c51d32b251deb47488cba803383428 https://www.encodeproject.org/files/ENCFF752NOG/@@download/ENCFF752NOG.bigWig released s3://encode-public/2016/02/03/e480d2ad-f0bf-4c15-8768-3c76ed0a211e/ENCFF752NOG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF785PUA bigWig bigWig read-depth normalized signal ce11 ENCSR842PNM Control ChIP-seq /worm-donors/ENCDO902QDA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', 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https://www.encodeproject.org/files/ENCFF001HNW/@@download/ENCFF001HNW.bam archived s3://encode-public/2011/06/25/e3c1441e-80d2-4f88-aebc-bbce1f65a7a7/ENCFF001HNW.bam Lab custom hg19 archived low read depth, low read length ENCFF001HOD fastq fastq reads ENCSR000DUC Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 725612452 John Stamatoyannopoulos, UW da1975dfded72c3e1af2c989d9af0011 https://www.encodeproject.org/files/ENCFF001HOD/@@download/ENCFF001HOD.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/f51bb116-0d1a-4f40-8044-40c723e57068/ENCFF001HOD.fastq.gz low read depth, low read length ENCFF610SOD bam bam unfiltered alignments GRCh38 ENCSR000DUC Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HOD/, /files/ENCFF643CGH/ 898050789 ENCODE Processing Pipeline 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/files/ENCFF001HOD/, /files/ENCFF110MCL/ 877752244 ENCODE Processing Pipeline dff3e35ee90291a496bfe2346e7a8f79 https://www.encodeproject.org/files/ENCFF267WYY/@@download/ENCFF267WYY.bam released s3://encode-public/2020/09/03/fdc2587e-3387-4dde-8343-3b8d2e8a0b4a/ENCFF267WYY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF536KSL bam bam alignments GRCh38 ENCSR000DUC Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HOD/, /files/ENCFF110MCL/ 690352703 ENCODE Processing Pipeline 5dd14816823bf73093c9531a02fde70f https://www.encodeproject.org/files/ENCFF536KSL/@@download/ENCFF536KSL.bam released s3://encode-public/2020/09/03/3038d9b7-7cce-461a-8247-d888fd4fc3b5/ENCFF536KSL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF390GTH fastq fastq reads ENCSR291MSY Control ChIP-seq /worm-donors/ENCDO864KXE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180671/'], '@type': ['Target', 'Item'], 'name': 'ceh-18-celegans', 'label': 'ceh-18', '@id': '/targets/ceh-18-celegans/', 'title': 'ceh-18 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e5e62ee-3a12-48cb-8a3f-70ea9d1c3cd8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 455572243 Kevin White, UChicago 11c40a248e04bab68efea332b3879187 https://www.encodeproject.org/files/ENCFF390GTH/@@download/ENCFF390GTH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/d24883ae-b60d-4cc2-8900-93e0e9f9cfe3/ENCFF390GTH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF450WMN bam bam alignments ce10 ENCSR291MSY Control ChIP-seq /worm-donors/ENCDO864KXE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180671/'], '@type': ['Target', 'Item'], 'name': 'ceh-18-celegans', 'label': 'ceh-18', '@id': '/targets/ceh-18-celegans/', 'title': 'ceh-18 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e5e62ee-3a12-48cb-8a3f-70ea9d1c3cd8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF390GTH/ 660709100 Kevin White, UChicago 859684ef94a16a7e4fa424d6d638a2a1 https://www.encodeproject.org/files/ENCFF450WMN/@@download/ENCFF450WMN.bam released s3://encode-public/2015/08/19/e877a7c2-f1a2-44fd-96bc-c9e9edfa3e41/ENCFF450WMN.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF160KOI bigWig bigWig signal of unique reads ce10 ENCSR291MSY Control ChIP-seq /worm-donors/ENCDO864KXE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180671/'], '@type': ['Target', 'Item'], 'name': 'ceh-18-celegans', 'label': 'ceh-18', '@id': '/targets/ceh-18-celegans/', 'title': 'ceh-18 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e5e62ee-3a12-48cb-8a3f-70ea9d1c3cd8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF450WMN/ 9967285 Kevin White, UChicago 12545dfabb0dff556e450c3f119c28e0 https://www.encodeproject.org/files/ENCFF160KOI/@@download/ENCFF160KOI.bigWig released s3://encode-public/2015/10/02/d9a0e4af-67f4-4aff-9c7b-b70be1f69128/ENCFF160KOI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF064BAI bigWig bigWig read-depth normalized signal ce10 ENCSR291MSY Control ChIP-seq /worm-donors/ENCDO864KXE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180671/'], '@type': ['Target', 'Item'], 'name': 'ceh-18-celegans', 'label': 'ceh-18', '@id': '/targets/ceh-18-celegans/', 'title': 'ceh-18 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e5e62ee-3a12-48cb-8a3f-70ea9d1c3cd8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF450WMN/ 9991665 Kevin White, UChicago 751e0c5cef9d56da3858eba3b02818e0 https://www.encodeproject.org/files/ENCFF064BAI/@@download/ENCFF064BAI.bigWig released s3://encode-public/2015/10/02/30f01d8e-33b7-4fb2-884e-d8d507dfcb8c/ENCFF064BAI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF052IVH bam bam alignments ce11 ENCSR291MSY Control ChIP-seq /worm-donors/ENCDO864KXE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180671/'], '@type': ['Target', 'Item'], 'name': 'ceh-18-celegans', 'label': 'ceh-18', '@id': '/targets/ceh-18-celegans/', 'title': 'ceh-18 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e5e62ee-3a12-48cb-8a3f-70ea9d1c3cd8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF390GTH/ 661266909 Kevin White, UChicago 6d1d1ff760d3e9ba6ccd089697fc5d6a https://www.encodeproject.org/files/ENCFF052IVH/@@download/ENCFF052IVH.bam released s3://encode-public/2016/01/16/fd4bbe1b-9c82-40f0-95f2-10a42ef1adf3/ENCFF052IVH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF830OSL bigWig bigWig signal of unique reads ce11 ENCSR291MSY Control ChIP-seq /worm-donors/ENCDO864KXE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180671/'], '@type': ['Target', 'Item'], 'name': 'ceh-18-celegans', 'label': 'ceh-18', '@id': '/targets/ceh-18-celegans/', 'title': 'ceh-18 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e5e62ee-3a12-48cb-8a3f-70ea9d1c3cd8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF052IVH/ 9965561 Kevin White, UChicago 5b320a1381130fb935e1661600d34994 https://www.encodeproject.org/files/ENCFF830OSL/@@download/ENCFF830OSL.bigWig released s3://encode-public/2016/02/03/35da81b2-2dd4-48a2-821a-24f46a5d7d82/ENCFF830OSL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF828IXS bigWig bigWig read-depth normalized signal ce11 ENCSR291MSY Control ChIP-seq /worm-donors/ENCDO864KXE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180671/'], '@type': ['Target', 'Item'], 'name': 'ceh-18-celegans', 'label': 'ceh-18', '@id': '/targets/ceh-18-celegans/', 'title': 'ceh-18 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2e5e62ee-3a12-48cb-8a3f-70ea9d1c3cd8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF052IVH/ 9988747 Kevin White, UChicago b83edc99179d8eeed2bfc973fb9771b3 https://www.encodeproject.org/files/ENCFF828IXS/@@download/ENCFF828IXS.bigWig released s3://encode-public/2016/02/03/b1b7dced-7fcd-4a5b-a19c-9ca9790de73e/ENCFF828IXS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF000ZMF bam bam alignments hg19 ENCSR000FAM Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 25 /files/ENCFF000ZMO/ 523094130 Sherman Weissman, Yale 94ed1ba190fa9503d0cc7391daa93d6d https://www.encodeproject.org/files/ENCFF000ZMF/@@download/ENCFF000ZMF.bam archived s3://encode-public/2010/12/02/b617b10a-f2b5-42bd-b7ed-1bae0818d1bc/ENCFF000ZMF.bam Lab custom hg19 archived insufficient read depth extremely low read length ENCFF000ZMG bigWig bigWig signal hg19 ENCSR000FAM Control ChIP-seq EFO:0002798 NB4 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 315329294 Sherman Weissman, Yale f9c63a7c4b053f520d4508b28b864063 https://www.encodeproject.org/files/ENCFF000ZMG/@@download/ENCFF000ZMG.bigWig archived s3://encode-public/2010/12/02/f0bff068-db7c-445d-958c-3c35cb577396/ENCFF000ZMG.bigWig Lab custom hg19 archived insufficient read depth extremely low read length ENCFF000ZMO fastq fastq reads ENCSR000FAM Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 25 single-ended 382107478 Sherman Weissman, Yale 0eadfcec822d932d32df50bc7f68b4e1 https://www.encodeproject.org/files/ENCFF000ZMO/@@download/ENCFF000ZMO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/d3cc904e-bd7b-42c8-9650-65cb2e46c7fb/ENCFF000ZMO.fastq.gz insufficient read depth extremely low read length ENCFF801NQW bam bam unfiltered alignments GRCh38 ENCSR000FAM Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 25 /files/ENCFF000ZMO/, /files/ENCFF643CGH/ 525179893 ENCODE Processing Pipeline d3d4cb78d17e3b7837f2b3a60b0ff9f3 https://www.encodeproject.org/files/ENCFF801NQW/@@download/ENCFF801NQW.bam released s3://encode-public/2016/10/26/751d91e8-f417-4c75-812c-4034230eec18/ENCFF801NQW.bam ENCODE3 GRCh38 archived insufficient read depth extremely low read length ENCFF354YLD bam bam alignments GRCh38 ENCSR000FAM Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 25 /files/ENCFF000ZMO/, /files/ENCFF643CGH/ 215051815 ENCODE Processing Pipeline cc81a411ff2a505e960ee7264c7be03e https://www.encodeproject.org/files/ENCFF354YLD/@@download/ENCFF354YLD.bam released s3://encode-public/2016/10/26/8b84b5d4-cea2-4ead-8c19-da9dbfc6aa01/ENCFF354YLD.bam ENCODE3 GRCh38 archived insufficient read depth extremely low read length ENCFF919JJM bam bam alignments GRCh38 ENCSR000FAM Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 25 /files/ENCFF110MCL/, /files/ENCFF000ZMO/ 169100741 ENCODE Processing Pipeline 98a699524e7031ef34475e49f796df2c https://www.encodeproject.org/files/ENCFF919JJM/@@download/ENCFF919JJM.bam released s3://encode-public/2020/10/27/31b871e0-f8f8-4b6d-8d76-81566996be59/ENCFF919JJM.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth extremely low read length ENCFF564BAQ bam bam unfiltered alignments GRCh38 ENCSR000FAM Control ChIP-seq /human-donors/ENCDO000ADG/ EFO:0002798 NB4 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 25 /files/ENCFF110MCL/, /files/ENCFF000ZMO/ 468629162 ENCODE Processing Pipeline f100eebb195b2d6b0ec4ad3ba03c84bd https://www.encodeproject.org/files/ENCFF564BAQ/@@download/ENCFF564BAQ.bam released s3://encode-public/2020/10/27/903d924d-9491-48ab-aade-b533a8f527a7/ENCFF564BAQ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth extremely low read length ENCFF000XRH fastq fastq reads ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 single-ended 97967925 Michael Snyder, Stanford 2bd910f7223c501cc8127d3ac9a79fa7 https://www.encodeproject.org/files/ENCFF000XRH/@@download/ENCFF000XRH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/98eb2f9f-24c4-44b2-a621-947840979d80/ENCFF000XRH.fastq.gz mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF000XRI fastq fastq reads ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 single-ended 175808958 Michael Snyder, Stanford 1da98427067a0893221b410c35c80bf5 https://www.encodeproject.org/files/ENCFF000XRI/@@download/ENCFF000XRI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/c4221ff4-5830-4244-89f5-be97c96ed32b/ENCFF000XRI.fastq.gz mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF000XSO bam bam alignments hg19 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000XRH/ 131699599 Michael Snyder, Stanford 36b7a5d98136c296cc624c88fcdbb54d https://www.encodeproject.org/files/ENCFF000XSO/@@download/ENCFF000XSO.bam archived s3://encode-public/2012/07/01/6f4836f8-2bf5-4f4d-8bfc-3640b2424ee5/ENCFF000XSO.bam Lab custom hg19 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF000XSP bam bam alignments hg19 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XRI/ 192250300 Michael Snyder, Stanford 473306c25d11c97ae15b850590c87448 https://www.encodeproject.org/files/ENCFF000XSP/@@download/ENCFF000XSP.bam archived s3://encode-public/2012/07/01/a57e6571-d23c-4115-bba1-178ed8b71681/ENCFF000XSP.bam Lab custom hg19 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF000XSQ bigWig bigWig signal hg19 ENCSR000EER Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 299878545 Michael Snyder, Stanford 19195f937505fd39abaa8fe7583aa813 https://www.encodeproject.org/files/ENCFF000XSQ/@@download/ENCFF000XSQ.bigWig archived s3://encode-public/2012/07/01/8c42e486-c335-49fa-9281-07c84b4de8cc/ENCFF000XSQ.bigWig Lab custom hg19 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF485END bam bam unfiltered alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000XRH/, /files/ENCFF643CGH/ 132239765 ENCODE Processing Pipeline d1c8bbc795e4329f92bbd50808a07dd6 https://www.encodeproject.org/files/ENCFF485END/@@download/ENCFF485END.bam released s3://encode-public/2016/10/26/d265186b-5d34-48b2-afa7-635e02e72007/ENCFF485END.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF866NKA bam bam unfiltered alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XRI/, /files/ENCFF643CGH/ 192793405 ENCODE Processing Pipeline acc293cf6014ceb64b1bd1195b8b12c6 https://www.encodeproject.org/files/ENCFF866NKA/@@download/ENCFF866NKA.bam released s3://encode-public/2016/10/26/94d5600c-dfa1-410f-bd16-34b66016efc7/ENCFF866NKA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF992VDP bam bam alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000XRH/, /files/ENCFF643CGH/ 69386583 ENCODE Processing Pipeline 4f50408067c704d315dfc186075da621 https://www.encodeproject.org/files/ENCFF992VDP/@@download/ENCFF992VDP.bam released s3://encode-public/2016/10/26/34e99edf-9c24-43ad-b4ca-ce4ce77fbde7/ENCFF992VDP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF616YCB bam bam alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XRI/, /files/ENCFF643CGH/ 69349853 ENCODE Processing Pipeline b731d448b63765fd11c0723e3ebf9926 https://www.encodeproject.org/files/ENCFF616YCB/@@download/ENCFF616YCB.bam released s3://encode-public/2016/10/26/62eae1d6-233e-4097-ba3d-f5679e4aec8e/ENCFF616YCB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF292GHI bam bam unfiltered alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF110MCL/, /files/ENCFF000XRH/ 122566919 ENCODE Processing Pipeline 46505ba9488bb387f5822e94e257f184 https://www.encodeproject.org/files/ENCFF292GHI/@@download/ENCFF292GHI.bam released s3://encode-public/2020/10/27/3886d7c0-514b-4a97-ad16-f35953e485ee/ENCFF292GHI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF122VQG bam bam alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000XRI/ 71579624 ENCODE Processing Pipeline e836abbd331bf99f3a149a99cfc8694f https://www.encodeproject.org/files/ENCFF122VQG/@@download/ENCFF122VQG.bam released s3://encode-public/2020/10/27/5b4bfb65-bfa8-4493-90b5-3ccb3897153a/ENCFF122VQG.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF985OXC bam bam alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF110MCL/, /files/ENCFF000XRH/ 72835620 ENCODE Processing Pipeline 2c6f0c35a9228f06b08d271bf7531a84 https://www.encodeproject.org/files/ENCFF985OXC/@@download/ENCFF985OXC.bam released s3://encode-public/2020/10/27/5396126d-37ef-4679-889a-a10e7841d7be/ENCFF985OXC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF191OZO bam bam unfiltered alignments GRCh38 ENCSR000EER Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens 22-hydroxycholesterol, insulin 10 μM, 100 μM 6 hour, 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000XRI/ 186101548 ENCODE Processing Pipeline 826603a7d0d77ac7b03a89efeb9d59a1 https://www.encodeproject.org/files/ENCFF191OZO/@@download/ENCFF191OZO.bam released s3://encode-public/2020/10/27/f7bbb2bf-0824-4652-a5ad-ef831161aa64/ENCFF191OZO.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF242BKT bam bam unfiltered alignments hg19 ENCSR711HPO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 8 8_1 50 /files/ENCFF002BFX/, /files/ENCFF807MUK/ 2235435170 ENCODE Processing Pipeline 534abe347069fc607dc053e89c06ff04 https://www.encodeproject.org/files/ENCFF242BKT/@@download/ENCFF242BKT.bam released s3://encode-public/2018/02/21/971a952d-1151-437a-80fc-25a9b9b4ab60/ENCFF242BKT.bam ENCODE3 hg19 archived ENCFF002BFX fastq fastq reads ENCSR711HPO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 8 8_1 50 single-ended 2171368042 Richard Myers, HAIB 783be970937807eea0cc41f4d14209a9 SRA:SRR5339162 https://www.encodeproject.org/files/ENCFF002BFX/@@download/ENCFF002BFX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/04/04/6ae2b31f-82e1-40ad-afae-b68f830962ee/ENCFF002BFX.fastq.gz ENCFF049HWT bam bam alignments hg19 ENCSR711HPO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 8 8_1 50 /files/ENCFF002BFX/, /files/ENCFF807MUK/ 1591778785 ENCODE Processing Pipeline ef959bbbc1bb3ee79a93d1c1165348ca https://www.encodeproject.org/files/ENCFF049HWT/@@download/ENCFF049HWT.bam released s3://encode-public/2015/10/28/4eb3c84e-0b28-4e5a-a42c-58e0579358bb/ENCFF049HWT.bam ENCODE3 hg19 archived ENCFF161TWC bam bam unfiltered alignments GRCh38 ENCSR711HPO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 8 8_1 50 /files/ENCFF002BFX/, /files/ENCFF643CGH/ 2240230652 ENCODE Processing Pipeline 93b30df7b1da80122ddd38b42f29a352 https://www.encodeproject.org/files/ENCFF161TWC/@@download/ENCFF161TWC.bam released s3://encode-public/2016/05/06/3df48c03-2a92-4db0-ab2a-12967737226c/ENCFF161TWC.bam ENCODE3 GRCh38 archived ENCFF321TIQ bam bam alignments GRCh38 ENCSR711HPO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 8 8_1 50 /files/ENCFF002BFX/, /files/ENCFF643CGH/ 1592098800 ENCODE Processing Pipeline 6b9c9804aad88d46670b0dc8c29f3434 https://www.encodeproject.org/files/ENCFF321TIQ/@@download/ENCFF321TIQ.bam released s3://encode-public/2016/05/06/8e545f3b-d758-4f9a-b95a-1c4be073dfbd/ENCFF321TIQ.bam ENCODE3 GRCh38 archived ENCFF121KQF bam bam unfiltered alignments GRCh38 ENCSR711HPO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 8 8_1 50 /files/ENCFF110MCL/, /files/ENCFF002BFX/ 2249485189 ENCODE Processing Pipeline a2791414983e195f13f93d1b890f26b1 https://www.encodeproject.org/files/ENCFF121KQF/@@download/ENCFF121KQF.bam released s3://encode-public/2020/06/06/190914a2-093d-429b-ab67-4d49b0f4b323/ENCFF121KQF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF053PAI bam bam alignments GRCh38 ENCSR711HPO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 8 8_1 50 /files/ENCFF110MCL/, /files/ENCFF002BFX/ 1629759482 ENCODE Processing Pipeline c118a3bdcbbd6fea92e7a53a07c97051 https://www.encodeproject.org/files/ENCFF053PAI/@@download/ENCFF053PAI.bam released s3://encode-public/2020/06/06/6d94aec6-2c6d-407c-9271-ccf3e56907dc/ENCFF053PAI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF000QXC bam bam alignments hg19 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 /files/ENCFF000QXL/ 1474155603 Richard Myers, HAIB cba7e1d3d38bc0c162d28d04c93f739b https://www.encodeproject.org/files/ENCFF000QXC/@@download/ENCFF000QXC.bam archived s3://encode-public/2012/01/23/a795f8bc-29ff-4bdd-8e80-7aa36ea5590b/ENCFF000QXC.bam Lab custom hg19 archived low read length ENCFF000QXD bigWig bigWig raw signal hg19 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 3294221 Richard Myers, HAIB 71780bb9abe3437a1d26639ddfff007a https://www.encodeproject.org/files/ENCFF000QXD/@@download/ENCFF000QXD.bigWig archived s3://encode-public/2012/01/23/854e4832-bbdd-4658-8b0e-d1fb10aaeaf4/ENCFF000QXD.bigWig Lab custom hg19 archived low read length ENCFF000QXL fastq fastq reads ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 single-ended 1085705851 Richard Myers, HAIB 4bb8b84c3cae6ace1c8e8f8050dbe3ab https://www.encodeproject.org/files/ENCFF000QXL/@@download/ENCFF000QXL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/2dfa40b5-c6c6-42b7-b4cf-d1c311174f6e/ENCFF000QXL.fastq.gz low read length ENCFF301NVQ bam bam unfiltered alignments GRCh38 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 /files/ENCFF000QXL/, /files/ENCFF643CGH/ 1559662682 ENCODE Processing Pipeline bba17a02ffdd8c021f260f6193f27c19 https://www.encodeproject.org/files/ENCFF301NVQ/@@download/ENCFF301NVQ.bam released s3://encode-public/2016/10/26/ad69d104-17b0-4895-952f-09ba7cc5b011/ENCFF301NVQ.bam ENCODE3 GRCh38 archived low read length ENCFF478FRJ bam bam alignments GRCh38 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 /files/ENCFF000QXL/, /files/ENCFF643CGH/ 1050196317 ENCODE Processing Pipeline 96c522631397024866994449cc501538 https://www.encodeproject.org/files/ENCFF478FRJ/@@download/ENCFF478FRJ.bam released s3://encode-public/2016/10/26/08c2f0f6-01c0-46f2-a9f1-bb2832473d5d/ENCFF478FRJ.bam ENCODE3 GRCh38 archived low read length ENCFF337RHQ bam bam unfiltered alignments hg19 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 /files/ENCFF000QXL/, /files/ENCFF807MUK/ 1552713589 ENCODE Processing Pipeline f8443b64fc5495474f7227ca3aa5a62c https://www.encodeproject.org/files/ENCFF337RHQ/@@download/ENCFF337RHQ.bam released s3://encode-public/2016/11/13/a5a2e0ea-12f4-43ac-bb02-286f772c195e/ENCFF337RHQ.bam ENCODE3 hg19 archived low read length ENCFF863QPG bam bam alignments hg19 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 /files/ENCFF000QXL/, /files/ENCFF807MUK/ 1050517283 ENCODE Processing Pipeline 096b10678e65245487e000d4fb0290a7 https://www.encodeproject.org/files/ENCFF863QPG/@@download/ENCFF863QPG.bam released s3://encode-public/2016/11/13/19970646-e703-48e8-a3c0-1df9d9f45a39/ENCFF863QPG.bam ENCODE3 hg19 archived low read length ENCFF918EPP bam bam alignments GRCh38 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 /files/ENCFF000QXL/, /files/ENCFF110MCL/ 1152411710 ENCODE Processing Pipeline f33beab768c07f581172c7fcaa899cb2 https://www.encodeproject.org/files/ENCFF918EPP/@@download/ENCFF918EPP.bam released s3://encode-public/2020/10/28/9a48e7cd-52db-4ba5-894f-1f5d4fe04557/ENCFF918EPP.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF610OWG bam bam unfiltered alignments GRCh38 ENCSR000BIX Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE 1 1_1 36 /files/ENCFF000QXL/, /files/ENCFF110MCL/ 1524839493 ENCODE Processing Pipeline b71abba751f68f04833ff39299a31ec6 https://www.encodeproject.org/files/ENCFF610OWG/@@download/ENCFF610OWG.bam released s3://encode-public/2020/10/28/54d9d895-2a8d-476d-aa53-71e5a9081587/ENCFF610OWG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF870DJZ bam bam unfiltered alignments hg19 ENCSR599SPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BGC/ 2692738352 ENCODE Processing Pipeline 2e43d62b665eaf492ee3d59fb137392c https://www.encodeproject.org/files/ENCFF870DJZ/@@download/ENCFF870DJZ.bam released s3://encode-public/2018/02/22/bd6f3efc-0665-4b84-85d2-85d5d1ba4a0b/ENCFF870DJZ.bam ENCODE3 hg19 archived ENCFF002BGC fastq fastq reads ENCSR599SPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 single-ended 2538712082 Richard Myers, HAIB e3b6bc6f0ffbaf94af6f3c7746f93867 SRA:SRR5339081 https://www.encodeproject.org/files/ENCFF002BGC/@@download/ENCFF002BGC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/04/04/d11ac3b4-ddc6-40e2-ab73-7f7412bcef93/ENCFF002BGC.fastq.gz ENCFF018BCR bam bam unfiltered alignments GRCh38 ENCSR599SPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF002BGC/ 2698875661 ENCODE Processing Pipeline 80081f8b9c3ee3db8d1c2805107cec39 https://www.encodeproject.org/files/ENCFF018BCR/@@download/ENCFF018BCR.bam released s3://encode-public/2016/05/06/30d90c8c-c9b7-44f2-a512-85d250e49cef/ENCFF018BCR.bam ENCODE3 GRCh38 archived ENCFF709XAA bam bam alignments GRCh38 ENCSR599SPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF002BGC/ 2073873049 ENCODE Processing Pipeline e0303e8d39cd948baf342e99808013a7 https://www.encodeproject.org/files/ENCFF709XAA/@@download/ENCFF709XAA.bam released s3://encode-public/2016/05/06/b755fb51-767e-4a54-b0e5-51c84d5c4c8b/ENCFF709XAA.bam ENCODE3 GRCh38 archived ENCFF023YMB bam bam alignments hg19 ENCSR599SPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BGC/ 2074348438 ENCODE Processing Pipeline 2851081ba2ccb96485c59ed4aeff3ec3 https://www.encodeproject.org/files/ENCFF023YMB/@@download/ENCFF023YMB.bam released s3://encode-public/2016/09/06/c7e01c7d-47d1-4be0-bcaf-c15319467206/ENCFF023YMB.bam ENCODE3 hg19 archived ENCFF955NCD bam bam unfiltered alignments GRCh38 ENCSR599SPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF002BGC/, /files/ENCFF110MCL/ 2700422007 ENCODE Processing Pipeline cf168328a6f2a493d7191d6f1c61c916 https://www.encodeproject.org/files/ENCFF955NCD/@@download/ENCFF955NCD.bam released s3://encode-public/2020/11/05/294b60d5-d6b7-4c63-8541-2c5a94059fb4/ENCFF955NCD.bam ENCODE4 v1.6.1 GRCh38 released ENCFF793EAF bam bam alignments GRCh38 ENCSR599SPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF002BGC/, /files/ENCFF110MCL/ 2140442132 ENCODE Processing Pipeline e501f8760fccd6f409955234fe7ffc65 https://www.encodeproject.org/files/ENCFF793EAF/@@download/ENCFF793EAF.bam released s3://encode-public/2020/11/05/68d0350d-135d-4aaf-9437-2b2217653237/ENCFF793EAF.bam ENCODE4 v1.6.1 GRCh38 released ENCFF001JXB bam bam alignments mm9 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 443319462 Bing Ren, UCSD 9ef9f1c2ea99564e1c8166a1ea49af0a https://www.encodeproject.org/files/ENCFF001JXB/@@download/ENCFF001JXB.bam archived s3://encode-public/2011/12/23/0dd5e099-1b24-489a-aa2e-b4272fb64273/ENCFF001JXB.bam Lab custom mm9 archived low read length insufficient read depth ENCFF001JXD bam bam alignments mm9 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 /files/ENCFF001JXL/ 403241220 Bing Ren, UCSD ec9ff82bf2a1d383dfa1e85887892889 https://www.encodeproject.org/files/ENCFF001JXD/@@download/ENCFF001JXD.bam archived s3://encode-public/2011/12/23/93e735ee-42ac-47f2-98be-20365239d4fa/ENCFF001JXD.bam Lab custom mm9 archived low read length insufficient read depth ENCFF001JXG bigWig bigWig signal mm9 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 1, 2 1_1, 2_1 /files/ENCFF001JXD/, /files/ENCFF001JXB/ 75748637 Bing Ren, UCSD f2cbab442178f2a8f9426e4e3655ac3a https://www.encodeproject.org/files/ENCFF001JXG/@@download/ENCFF001JXG.bigWig archived s3://encode-public/2011/12/23/19953404-15e6-42bf-ac2a-b845b832ec02/ENCFF001JXG.bigWig Lab custom mm9 archived low read length insufficient read depth ENCFF001JXL fastq fastq reads ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 single-ended 417293632 Bing Ren, UCSD 7f4311ba3e256df547039e51973daa34 https://www.encodeproject.org/files/ENCFF001JXL/@@download/ENCFF001JXL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/bf44252c-cc22-487f-85ac-2aa3de6f96e7/ENCFF001JXL.fastq.gz low read length insufficient read depth ENCFF279RBD bam bam unfiltered alignments mm10-minimal ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 /files/ENCFF001JXL/, /files/ENCFF806TVZ/ 503247635 J. Michael Cherry, Stanford 789c175e0dc99be0836bcd4d29e61892 https://www.encodeproject.org/files/ENCFF279RBD/@@download/ENCFF279RBD.bam archived s3://encode-public/2015/02/04/ccceed9b-da02-4acc-a699-264e63a020e4/ENCFF279RBD.bam ENCODE3 mm10-minimal archived low read length insufficient read depth ENCFF717EAN fastq fastq reads ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 single-ended 328888038 Bing Ren, UCSD 217ff2705cdf32bb8bd27685628be71f https://www.encodeproject.org/files/ENCFF717EAN/@@download/ENCFF717EAN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/04/16/7ff1c0ea-e063-4f60-a994-25384ebee3bb/ENCFF717EAN.fastq.gz low read length insufficient read depth ENCFF592QZO bam bam unfiltered alignments mm10-minimal ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 /files/ENCFF717EAN/, /files/ENCFF806TVZ/ 467567788 ENCODE Processing Pipeline 023385141fd1023d2cfb57f0287e0742 https://www.encodeproject.org/files/ENCFF592QZO/@@download/ENCFF592QZO.bam archived s3://encode-public/2015/11/18/48e12872-4720-4a9e-81ce-b7085b2a4bc0/ENCFF592QZO.bam ENCODE3 mm10-minimal archived low read length insufficient read depth ENCFF797NTG bam bam unfiltered alignments mm10 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF717EAN/ 468585690 ENCODE Processing Pipeline 827cc55082d9ff8b96475d064d7a0bf9 https://www.encodeproject.org/files/ENCFF797NTG/@@download/ENCFF797NTG.bam released s3://encode-public/2016/10/26/d7c5356b-0054-40b7-a1ae-688c4251018c/ENCFF797NTG.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF732PZF bam bam unfiltered alignments mm10 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ 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mm10 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001JXL/ 338120829 ENCODE Processing Pipeline 53b24a04a187389184be0478226480a1 https://www.encodeproject.org/files/ENCFF498QAY/@@download/ENCFF498QAY.bam released s3://encode-public/2016/10/26/c5934c93-8e4b-4aff-abf2-c1791088f8fa/ENCFF498QAY.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF934TGK bam bam unfiltered alignments mm10 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF717EAN/ 455007373 ENCODE Processing Pipeline 7f2a5297054f6bc29bc2e240df776bea https://www.encodeproject.org/files/ENCFF934TGK/@@download/ENCFF934TGK.bam released s3://encode-public/2020/11/06/55370a8c-b516-4580-a5c5-82e3b877e9a9/ENCFF934TGK.bam ENCODE4 v1.6.1 mm10 released low read length insufficient read depth ENCFF416HYP bam bam unfiltered alignments mm10 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001JXL/ 491937578 ENCODE Processing Pipeline 412bddddd9d80126c7bca62399063482 https://www.encodeproject.org/files/ENCFF416HYP/@@download/ENCFF416HYP.bam released s3://encode-public/2020/11/06/a169a4da-d70d-4a3f-86f2-da5b0d3a9ee3/ENCFF416HYP.bam ENCODE4 v1.6.1 mm10 released low read length insufficient read depth ENCFF394NIO bam bam alignments mm10 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF717EAN/ 339829663 ENCODE Processing Pipeline ef188531d2104fbc61a809a0842d4f44 https://www.encodeproject.org/files/ENCFF394NIO/@@download/ENCFF394NIO.bam released s3://encode-public/2020/11/06/73a50ea1-98de-4968-9bd8-bed82c9cca67/ENCFF394NIO.bam ENCODE4 v1.6.1 mm10 released low read length insufficient read depth ENCFF920PCQ bam bam alignments mm10 ENCSR000CGF Control ChIP-seq /mouse-donors/ENCDO072AAA/ NTR:0000741 splenic B cell primary cell Mus musculus DNA 2012-09-05 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001JXL/ 366253346 ENCODE Processing Pipeline 36e7e2e962112676428583a640f12bf8 https://www.encodeproject.org/files/ENCFF920PCQ/@@download/ENCFF920PCQ.bam released s3://encode-public/2020/11/06/eabbc93a-2def-47de-beca-12e879b7f264/ENCFF920PCQ.bam ENCODE4 v1.6.1 mm10 released low read length insufficient read depth ENCFF379VTC fastq fastq reads ENCSR699ZXW Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2014-03-31 modENCODE 1 1_1 36 single-ended 259751457 David MacAlpine, Duke 7b6e989bc3c476e76d6d4ede44164897 https://www.encodeproject.org/files/ENCFF379VTC/@@download/ENCFF379VTC.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2016/02/02/e4e9f7a9-9478-43da-9769-fdcc560ecbc4/ENCFF379VTC.fastq.gz lacking processed data ENCFF494BOK fastq fastq reads ENCSR614DFZ Control ChIP-seq /worm-donors/ENCDO260XPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180149/'], '@type': ['Target', 'Item'], 'name': 'lsy-27-celegans', 'label': 'lsy-27', '@id': '/targets/lsy-27-celegans/', 'title': 'lsy-27 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'd14a5131-46d4-45d7-899f-35635e46d119', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 114242036 Kevin White, UChicago e061ba8f2bc83e4c28499b2fab537098 https://www.encodeproject.org/files/ENCFF494BOK/@@download/ENCFF494BOK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF228MSC/ released s3://encode-public/2015/07/30/80744360-9763-4138-8b19-a93120e61953/ENCFF494BOK.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF811VAG bam bam alignments ce10 ENCSR614DFZ Control ChIP-seq /worm-donors/ENCDO260XPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180149/'], '@type': ['Target', 'Item'], 'name': 'lsy-27-celegans', 'label': 'lsy-27', '@id': '/targets/lsy-27-celegans/', 'title': 'lsy-27 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'd14a5131-46d4-45d7-899f-35635e46d119', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF494BOK/ 150784704 Kevin White, UChicago c0b300c6aa50160a112bcfb0787fe097 https://www.encodeproject.org/files/ENCFF811VAG/@@download/ENCFF811VAG.bam released s3://encode-public/2015/08/07/2cdd4ce3-85b4-4a27-b9c8-46167558438d/ENCFF811VAG.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF642SHA bigWig bigWig signal of unique reads ce10 ENCSR614DFZ Control ChIP-seq /worm-donors/ENCDO260XPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': 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ENCFF535QVI bigWig bigWig read-depth normalized signal ce10 ENCSR614DFZ Control ChIP-seq /worm-donors/ENCDO260XPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180149/'], '@type': ['Target', 'Item'], 'name': 'lsy-27-celegans', 'label': 'lsy-27', '@id': '/targets/lsy-27-celegans/', 'title': 'lsy-27 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'd14a5131-46d4-45d7-899f-35635e46d119', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF811VAG/ 10002082 Kevin White, UChicago dedd6567373cf1b94b46436725d6a526 https://www.encodeproject.org/files/ENCFF535QVI/@@download/ENCFF535QVI.bigWig released s3://encode-public/2015/10/02/cd8ea178-d1d8-48cf-b81d-4fa29678802b/ENCFF535QVI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF773NSV bam bam alignments ce11 ENCSR614DFZ Control ChIP-seq /worm-donors/ENCDO260XPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180149/'], '@type': ['Target', 'Item'], 'name': 'lsy-27-celegans', 'label': 'lsy-27', '@id': '/targets/lsy-27-celegans/', 'title': 'lsy-27 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'd14a5131-46d4-45d7-899f-35635e46d119', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF494BOK/ 150952895 Kevin White, UChicago df28b0f147a0601cc7cf92667f48f094 https://www.encodeproject.org/files/ENCFF773NSV/@@download/ENCFF773NSV.bam released s3://encode-public/2016/01/19/b023ad7e-1315-4332-820c-b5493f46f03d/ENCFF773NSV.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF964MCH bigWig bigWig signal of unique reads ce11 ENCSR614DFZ Control ChIP-seq /worm-donors/ENCDO260XPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 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https://www.encodeproject.org/files/ENCFF160WLY/@@download/ENCFF160WLY.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/26/6a8e3304-d612-4b23-b8e2-e5e778614686/ENCFF160WLY.fastq.gz low read depth, low read length ENCFF978AGM fastq fastq reads ENCSR000APU Control ChIP-seq /human-donors/ENCDO834SRG/ CL:0000062 osteoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 single-ended 953374705 Bradley Bernstein, Broad 16b22d6146a804bc7fc2af04c95252eb https://www.encodeproject.org/files/ENCFF978AGM/@@download/ENCFF978AGM.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/01/26/780d5d8f-907e-407c-984a-db7c6002178a/ENCFF978AGM.fastq.gz low read depth, low read length ENCFF443ITV bam bam unfiltered alignments GRCh38 ENCSR000APU Control ChIP-seq /human-donors/ENCDO834SRG/ CL:0000062 osteoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000CVB/ 1896512779 ENCODE Processing 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200-600 1 1_1 36 /files/ENCFF000CUZ/, /files/ENCFF110MCL/ 744794815 ENCODE Processing Pipeline d90de196b5582383b61b130b2e52887b https://www.encodeproject.org/files/ENCFF972OVQ/@@download/ENCFF972OVQ.bam released s3://encode-public/2020/09/03/65ffdc88-8b02-4f88-9010-9d0e604bdbdf/ENCFF972OVQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF632PKM bam bam alignments GRCh38 ENCSR000APU Control ChIP-seq /human-donors/ENCDO834SRG/ CL:0000062 osteoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000CVB/ 1470200896 ENCODE Processing Pipeline ab02ee29a7b7d5533de7b6a5c7cac6ae https://www.encodeproject.org/files/ENCFF632PKM/@@download/ENCFF632PKM.bam released s3://encode-public/2020/09/03/b9a72f4e-6566-4abe-91e2-4a9fe8d57319/ENCFF632PKM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF680RIG fastq fastq reads ENCSR841LDV Control ChIP-seq /fly-donors/ENCDO821KQH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36802/'], '@type': ['Target', 'Item'], 'name': 'CG7786-dmelanogaster', 'label': 'CG7786', '@id': '/targets/CG7786-dmelanogaster/', 'title': 'CG7786 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '76b1f136-20eb-4fb6-941e-9bdac4be9768', 'status': 'released'} dm3 2R 12110481 12132132 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 405378358 Kevin White, UChicago 6b065df9ed6c5b020436cc30f533d8f1 https://www.encodeproject.org/files/ENCFF680RIG/@@download/ENCFF680RIG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/ba011053-f481-45d4-979e-30a65d0e9817/ENCFF680RIG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF131AJL bam bam alignments dm3 ENCSR841LDV Control ChIP-seq /fly-donors/ENCDO821KQH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36802/'], '@type': ['Target', 'Item'], 'name': 'CG7786-dmelanogaster', 'label': 'CG7786', '@id': '/targets/CG7786-dmelanogaster/', 'title': 'CG7786 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '76b1f136-20eb-4fb6-941e-9bdac4be9768', 'status': 'released'} dm3 2R 12110481 12132132 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF680RIG/ 598316848 Kevin White, UChicago 01410bd84d71354e509d43da52a43f3e https://www.encodeproject.org/files/ENCFF131AJL/@@download/ENCFF131AJL.bam released s3://encode-public/2015/08/03/e08eef24-c1df-4370-89dc-5dcf50f3f88d/ENCFF131AJL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF225EJD bigWig bigWig signal of unique reads dm3 ENCSR841LDV Control ChIP-seq /fly-donors/ENCDO821KQH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36802/'], '@type': ['Target', 'Item'], 'name': 'CG7786-dmelanogaster', 'label': 'CG7786', '@id': '/targets/CG7786-dmelanogaster/', 'title': 'CG7786 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '76b1f136-20eb-4fb6-941e-9bdac4be9768', 'status': 'released'} dm3 2R 12110481 12132132 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF131AJL/ 15332675 Kevin White, UChicago 7cf7879aec5d6acae1fc8d67f36438b0 https://www.encodeproject.org/files/ENCFF225EJD/@@download/ENCFF225EJD.bigWig released s3://encode-public/2015/10/06/04d44616-d199-49e1-a735-76d7ddf1902c/ENCFF225EJD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF927CUC bigWig bigWig read-depth normalized signal dm3 ENCSR841LDV Control ChIP-seq /fly-donors/ENCDO821KQH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36802/'], '@type': ['Target', 'Item'], 'name': 'CG7786-dmelanogaster', 'label': 'CG7786', '@id': '/targets/CG7786-dmelanogaster/', 'title': 'CG7786 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '76b1f136-20eb-4fb6-941e-9bdac4be9768', 'status': 'released'} dm3 2R 12110481 12132132 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF131AJL/ 15288896 Kevin White, UChicago a18bd05135b4a5743801e83647988a30 https://www.encodeproject.org/files/ENCFF927CUC/@@download/ENCFF927CUC.bigWig released s3://encode-public/2015/10/06/5ff5e534-06c3-46c1-a8b3-0cf799a51b1b/ENCFF927CUC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF754XYG bam bam alignments dm6 ENCSR841LDV Control ChIP-seq /fly-donors/ENCDO821KQH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36802/'], '@type': ['Target', 'Item'], 'name': 'CG7786-dmelanogaster', 'label': 'CG7786', '@id': '/targets/CG7786-dmelanogaster/', 'title': 'CG7786 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '76b1f136-20eb-4fb6-941e-9bdac4be9768', 'status': 'released'} dm3 2R 12110481 12132132 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF680RIG/ 596577258 Kevin White, UChicago 22022515c343df35c03523cc45e235da https://www.encodeproject.org/files/ENCFF754XYG/@@download/ENCFF754XYG.bam released s3://encode-public/2016/04/21/0c3ab36d-4bf1-4619-8b8c-3f783090ed8f/ENCFF754XYG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF859IRP bigWig bigWig read-depth normalized signal dm6 ENCSR841LDV Control ChIP-seq /fly-donors/ENCDO821KQH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36802/'], '@type': ['Target', 'Item'], 'name': 'CG7786-dmelanogaster', 'label': 'CG7786', '@id': '/targets/CG7786-dmelanogaster/', 'title': 'CG7786 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '76b1f136-20eb-4fb6-941e-9bdac4be9768', 'status': 'released'} dm3 2R 12110481 12132132 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF754XYG/ 17389349 Kevin White, UChicago 81b0d213d44fab72fe48ec17580b59c9 https://www.encodeproject.org/files/ENCFF859IRP/@@download/ENCFF859IRP.bigWig released s3://encode-public/2016/06/20/e7c8b602-40c5-479f-b111-f67061b6515a/ENCFF859IRP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF468NPT bigWig bigWig signal of unique reads dm6 ENCSR841LDV Control ChIP-seq /fly-donors/ENCDO821KQH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36802/'], '@type': ['Target', 'Item'], 'name': 'CG7786-dmelanogaster', 'label': 'CG7786', '@id': '/targets/CG7786-dmelanogaster/', 'title': 'CG7786 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '76b1f136-20eb-4fb6-941e-9bdac4be9768', 'status': 'released'} dm3 2R 12110481 12132132 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF754XYG/ 17465915 Kevin White, UChicago a3e69f314c05a311a599bba0d0f11b1d https://www.encodeproject.org/files/ENCFF468NPT/@@download/ENCFF468NPT.bigWig released s3://encode-public/2016/06/20/6fcc09fa-fc51-4f2b-ae95-e41c9afca582/ENCFF468NPT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF417EFL fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 643159604 Bradley Bernstein, Broad c3abf441416ed0d8493b219133969f94 SRA:SRR16808133 https://www.encodeproject.org/files/ENCFF417EFL/@@download/ENCFF417EFL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a06c65a1-b8b4-49c0-a6af-d238027e9c55/ENCFF417EFL.fastq.gz ENCFF055JNN fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 759812615 Bradley Bernstein, Broad fb80dc6d21920415bd1430c7720fb6f5 SRA:SRR16808137 https://www.encodeproject.org/files/ENCFF055JNN/@@download/ENCFF055JNN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/078260dc-3e6b-4302-93d0-bcd8ff164cc9/ENCFF055JNN.fastq.gz ENCFF045BOM fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 627270129 Bradley Bernstein, Broad ea6f19538d0c60e41c12c24d84153613 SRA:SRR16808134 https://www.encodeproject.org/files/ENCFF045BOM/@@download/ENCFF045BOM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/105c6709-a167-45aa-afeb-e68b3b40ee21/ENCFF045BOM.fastq.gz ENCFF164NQF fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 634910219 Bradley Bernstein, Broad c88633bb9d6cb7bec57c93b45045f0ce SRA:SRR16808135 https://www.encodeproject.org/files/ENCFF164NQF/@@download/ENCFF164NQF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/dc18fcc5-ab24-4ee4-b55b-5afc3914b186/ENCFF164NQF.fastq.gz ENCFF770PZK fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 759785162 Bradley Bernstein, Broad 9e36bbece7a023e1194964ee0b71c66a SRA:SRR16808138 https://www.encodeproject.org/files/ENCFF770PZK/@@download/ENCFF770PZK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/7c3ab81b-3b81-400e-b6df-87fd409a2bee/ENCFF770PZK.fastq.gz ENCFF081RFP fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 635337427 Bradley Bernstein, Broad 0d8a547c8b86637ba216ce53ac9d4b22 SRA:SRR16808136 https://www.encodeproject.org/files/ENCFF081RFP/@@download/ENCFF081RFP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/dcb437eb-01ce-4a9d-baae-ee9e99edb151/ENCFF081RFP.fastq.gz ENCFF856YKR fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 771165512 Bradley Bernstein, Broad a15bd52282cddd7eed7fe5d137b6058b SRA:SRR16808139 https://www.encodeproject.org/files/ENCFF856YKR/@@download/ENCFF856YKR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/05873415-b81a-4818-8fad-ee771bb3f951/ENCFF856YKR.fastq.gz ENCFF631RLM fastq fastq reads ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 772519506 Bradley Bernstein, Broad 2e51abd748f8b9beb31a5342de98e6a2 SRA:SRR16808140 https://www.encodeproject.org/files/ENCFF631RLM/@@download/ENCFF631RLM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/1dd8c54c-37b0-44e3-9fe7-bd4bb7c34e38/ENCFF631RLM.fastq.gz ENCFF305OVC bam bam alignments GRCh38 ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF045BOM/, /files/ENCFF164NQF/, /files/ENCFF856YKR/, /files/ENCFF055JNN/, /files/ENCFF081RFP/, /files/ENCFF417EFL/, /files/ENCFF631RLM/, /files/ENCFF770PZK/ 4218571650 ENCODE Processing Pipeline 7fc590661e4675f6e0988c7453b004b4 https://www.encodeproject.org/files/ENCFF305OVC/@@download/ENCFF305OVC.bam released s3://encode-public/2021/09/15/6934fe53-f533-40b1-b5a9-674591f1f80b/ENCFF305OVC.bam ENCODE4 v1.8.0 GRCh38 released ENCFF781XEQ bam bam unfiltered alignments GRCh38 ENCSR145RXI Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF045BOM/, /files/ENCFF164NQF/, /files/ENCFF856YKR/, /files/ENCFF055JNN/, /files/ENCFF081RFP/, /files/ENCFF417EFL/, /files/ENCFF631RLM/, /files/ENCFF770PZK/ 5194689335 ENCODE Processing Pipeline b16a5b45794aca9315822b57aed4b5e7 https://www.encodeproject.org/files/ENCFF781XEQ/@@download/ENCFF781XEQ.bam released s3://encode-public/2021/09/15/7a5da6ea-0c55-49c3-a62d-88fe584c323f/ENCFF781XEQ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF000CIN bam bam alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/ 340800437 Bradley Bernstein, Broad 4183abc98bc327e7a8ab7fe78c0df906 https://www.encodeproject.org/files/ENCFF000CIN/@@download/ENCFF000CIN.bam archived s3://encode-public/2010/11/16/da0229fb-3cb5-48a3-bc1e-993972a3233a/ENCFF000CIN.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF000CIO bam bam alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 982067738 Bradley Bernstein, Broad b52e99ffa157b5048fb7e5f6530bc9a6 https://www.encodeproject.org/files/ENCFF000CIO/@@download/ENCFF000CIO.bam archived s3://encode-public/2010/11/16/594a3756-5855-4bce-96fc-797b7abb345c/ENCFF000CIO.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF000CIP bigWig bigWig signal hg19 ENCSR000APT Control ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 423015551 Bradley Bernstein, Broad 0fa3781631cddcab672523482149b6d1 https://www.encodeproject.org/files/ENCFF000CIP/@@download/ENCFF000CIP.bigWig archived s3://encode-public/2010/11/16/19297629-2c7a-43f6-8b1b-e2a2a52b95aa/ENCFF000CIP.bigWig Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF000CIU fastq fastq reads ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 single-ended 1021847846 Bradley Bernstein, Broad 4bf40fcee1c350767c889a5120acca07 https://www.encodeproject.org/files/ENCFF000CIU/@@download/ENCFF000CIU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/325544c6-9af7-44c2-9dd4-92eaeffdaffc/ENCFF000CIU.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF000CIW fastq fastq reads ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 single-ended 596085181 Bradley Bernstein, Broad 4c3a065ace83079e0322194c484fe11c https://www.encodeproject.org/files/ENCFF000CIW/@@download/ENCFF000CIW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/6d4eedc5-63b3-4b52-8bf3-8ac427affa44/ENCFF000CIW.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF090CYH bam bam unfiltered alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/, /files/ENCFF807MUK/ 680960186 ENCODE Processing Pipeline e64166b9b09481c56c329bfa9de4dbb3 https://www.encodeproject.org/files/ENCFF090CYH/@@download/ENCFF090CYH.bam released s3://encode-public/2016/11/30/2c210b75-b982-46c7-9fcb-9c600bdd85a6/ENCFF090CYH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF138XPE bam bam alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/, /files/ENCFF807MUK/ 170801851 ENCODE Processing Pipeline 714d6bb45e3e07d14fa0d01871e6cdf8 https://www.encodeproject.org/files/ENCFF138XPE/@@download/ENCFF138XPE.bam released s3://encode-public/2016/11/30/1f1887b5-5637-4ee0-8e69-7b98a93c5226/ENCFF138XPE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF898XQK tagAlign tagAlign alignments hg19 ENCSR000APT Control ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 117445395 Anshul Kundaje, Stanford 4f6b4b2083d56528cba225355d094387 https://www.encodeproject.org/files/ENCFF898XQK/@@download/ENCFF898XQK.tagAlign.gz archived s3://encode-public/2016/07/19/13e465c3-69ee-4330-b1bc-eebbcc51ac0a/ENCFF898XQK.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF860HKY fastq fastq reads ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 954607982 Bradley Bernstein, Broad 51f59594a9d3c8cae4867cca05b5b009 https://www.encodeproject.org/files/ENCFF860HKY/@@download/ENCFF860HKY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/fd77720c-7e8c-4f31-bdb8-2651c8e82e82/ENCFF860HKY.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF955HWE fastq fastq reads ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 757345688 Bradley Bernstein, Broad 607ad6e448905272a28ec51266766581 https://www.encodeproject.org/files/ENCFF955HWE/@@download/ENCFF955HWE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/d5601995-00d9-4b30-84ae-761e2b5234dd/ENCFF955HWE.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF412GJA fastq fastq reads ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 single-ended 805133166 Bradley Bernstein, Broad dcd7835062e0c720e8dd99e0077ea466 https://www.encodeproject.org/files/ENCFF412GJA/@@download/ENCFF412GJA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/f973f892-cc1c-4fcc-9734-f4de9c246d12/ENCFF412GJA.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF859VNG fastq fastq reads ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 single-ended 1024097214 Bradley Bernstein, Broad 7a9a577c013edde2554103f197855042 https://www.encodeproject.org/files/ENCFF859VNG/@@download/ENCFF859VNG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/47bd5309-f926-452d-85a8-a4c3bddbba3d/ENCFF859VNG.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF204ZPV bam bam unfiltered alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF412GJA/, /files/ENCFF807MUK/, /files/ENCFF859VNG/ 2327094409 ENCODE Processing Pipeline b09b7e106deae6e18e88594ee4349e45 https://www.encodeproject.org/files/ENCFF204ZPV/@@download/ENCFF204ZPV.bam released s3://encode-public/2017/04/06/e1e25255-7748-47e1-ab0c-dd417c099131/ENCFF204ZPV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF092GQD bam bam unfiltered alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF412GJA/, /files/ENCFF643CGH/, /files/ENCFF859VNG/ 2339138902 ENCODE Processing Pipeline 1803e7358ea727379500e00e536cd72f https://www.encodeproject.org/files/ENCFF092GQD/@@download/ENCFF092GQD.bam released s3://encode-public/2017/04/06/ca8b1231-d342-4f5a-a822-de1412ad4e7f/ENCFF092GQD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF753JIU bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF412GJA/, /files/ENCFF643CGH/, /files/ENCFF859VNG/ 1509259566 ENCODE Processing Pipeline 47922cff540c1e837ca3da41175c2a35 https://www.encodeproject.org/files/ENCFF753JIU/@@download/ENCFF753JIU.bam released s3://encode-public/2017/04/06/5266f7b8-30ad-4303-bae4-bf4b89b2023f/ENCFF753JIU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF615VVU bam bam alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF412GJA/, /files/ENCFF807MUK/, /files/ENCFF859VNG/ 1509830820 ENCODE Processing Pipeline e65a17eeb0e23d2719722ada081f5338 https://www.encodeproject.org/files/ENCFF615VVU/@@download/ENCFF615VVU.bam released s3://encode-public/2017/04/06/eb8c39ae-acc0-4c44-af44-d376a5623124/ENCFF615VVU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF487DBD bam bam unfiltered alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/, /files/ENCFF643CGH/ 683084157 ENCODE Processing Pipeline bd0a1dd0c19f2b8cda08c2254da90317 https://www.encodeproject.org/files/ENCFF487DBD/@@download/ENCFF487DBD.bam released s3://encode-public/2017/04/06/80884dc3-32a5-4644-8c07-a30377dd3d89/ENCFF487DBD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF782IQQ bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/, /files/ENCFF643CGH/ 170744820 ENCODE Processing Pipeline 4a34f99fbad4290cbb988e6a18b06359 https://www.encodeproject.org/files/ENCFF782IQQ/@@download/ENCFF782IQQ.bam released s3://encode-public/2017/04/06/45b0049d-5202-49cf-b407-d0b515ac2767/ENCFF782IQQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF739WQP bam bam unfiltered alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF955HWE/, /files/ENCFF807MUK/, /files/ENCFF860HKY/, /files/ENCFF000CIU/ 3558761809 ENCODE Processing Pipeline caf7fb55174683211810c591c64503f7 https://www.encodeproject.org/files/ENCFF739WQP/@@download/ENCFF739WQP.bam released s3://encode-public/2017/04/07/5be862c5-8d9c-4d67-8371-862bdff00fc0/ENCFF739WQP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF005RXL bam bam alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF955HWE/, /files/ENCFF807MUK/, /files/ENCFF860HKY/, /files/ENCFF000CIU/ 1949800729 ENCODE Processing Pipeline ffbe20d335f7cdf480c1776d5d2da5a5 https://www.encodeproject.org/files/ENCFF005RXL/@@download/ENCFF005RXL.bam released s3://encode-public/2017/04/07/ce330742-b061-400b-afd3-d289cc971708/ENCFF005RXL.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF429XTA bam bam unfiltered alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF955HWE/, /files/ENCFF860HKY/, /files/ENCFF643CGH/, /files/ENCFF000CIU/ 3581746032 ENCODE Processing Pipeline ccb8a62748d6c7348424e7bc547d3d09 https://www.encodeproject.org/files/ENCFF429XTA/@@download/ENCFF429XTA.bam released s3://encode-public/2017/04/07/952e0dae-0b86-4330-b799-781e97e33642/ENCFF429XTA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF638YZB bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF955HWE/, /files/ENCFF860HKY/, /files/ENCFF643CGH/, /files/ENCFF000CIU/ 1949181852 ENCODE Processing Pipeline 061edbf4a399e38b182572036359f663 https://www.encodeproject.org/files/ENCFF638YZB/@@download/ENCFF638YZB.bam released s3://encode-public/2017/04/07/ae44b22e-cbc7-4637-9a72-43b655c290c9/ENCFF638YZB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF247BUY bam bam unfiltered alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF412GJA/, /files/ENCFF807MUK/, /files/ENCFF859VNG/ 2327094411 ENCODE Processing Pipeline 63bf343c9e7569234717b88fe5d7eb25 https://www.encodeproject.org/files/ENCFF247BUY/@@download/ENCFF247BUY.bam released s3://encode-public/2020/02/06/e7ba4c85-ac23-4d34-acff-faf5a783dcef/ENCFF247BUY.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF548GGE bam bam unfiltered alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF955HWE/, /files/ENCFF807MUK/, /files/ENCFF860HKY/, /files/ENCFF000CIU/ 3558761811 ENCODE Processing Pipeline ec421be0a446a5b9e9177f807e9d97bc https://www.encodeproject.org/files/ENCFF548GGE/@@download/ENCFF548GGE.bam released s3://encode-public/2020/02/06/9eea5dc4-69c9-46f3-b8a5-5db621fc5d3a/ENCFF548GGE.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF556IGO bam bam alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF412GJA/, /files/ENCFF807MUK/, /files/ENCFF859VNG/ 1509830822 ENCODE Processing Pipeline e9942a8144dff00d4dbb419c5e9981f3 https://www.encodeproject.org/files/ENCFF556IGO/@@download/ENCFF556IGO.bam released s3://encode-public/2020/02/06/490f4b3b-c23e-4135-ae46-3abc663952f7/ENCFF556IGO.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF594RGI bam bam unfiltered alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/, /files/ENCFF807MUK/ 680960190 ENCODE Processing Pipeline c583ae7b4ae41ef6515c1eb35b121137 https://www.encodeproject.org/files/ENCFF594RGI/@@download/ENCFF594RGI.bam released s3://encode-public/2020/02/06/5a1b7ca0-a7d2-43f0-8bf1-5b5c230b185b/ENCFF594RGI.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF870BNJ bam bam alignments hg19 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/, /files/ENCFF807MUK/ 170801857 ENCODE Processing Pipeline 272504af80749a635999d557151e491d https://www.encodeproject.org/files/ENCFF870BNJ/@@download/ENCFF870BNJ.bam released s3://encode-public/2020/02/06/df6b23da-05e9-4fd0-bd5d-fcc685ba318e/ENCFF870BNJ.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF504FKP bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF412GJA/, /files/ENCFF643CGH/, /files/ENCFF859VNG/ 1509259570 ENCODE Processing Pipeline bfde2a9ad43d807603423b969cdf15bd https://www.encodeproject.org/files/ENCFF504FKP/@@download/ENCFF504FKP.bam released s3://encode-public/2020/02/17/dcdb6e76-9445-48ae-8123-c91f0c3579ea/ENCFF504FKP.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF606DDJ bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF955HWE/, /files/ENCFF860HKY/, /files/ENCFF643CGH/, /files/ENCFF000CIU/ 1949181855 ENCODE Processing Pipeline b2e7dd137c49235fc0ad447d816da0ee https://www.encodeproject.org/files/ENCFF606DDJ/@@download/ENCFF606DDJ.bam released s3://encode-public/2020/02/17/5863a1ec-fff8-4707-9f64-8178983e771a/ENCFF606DDJ.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF004LBV bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000CIW/, /files/ENCFF643CGH/ 170744823 ENCODE Processing Pipeline d6dd16b7ca92f9fa020f128417c19e5a https://www.encodeproject.org/files/ENCFF004LBV/@@download/ENCFF004LBV.bam released s3://encode-public/2020/02/17/bf62e05b-db1b-45be-89e8-239b82f0969a/ENCFF004LBV.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF796XKB bam bam unfiltered alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF955HWE/, /files/ENCFF860HKY/, /files/ENCFF643CGH/, /files/ENCFF000CIU/ 3581746033 ENCODE Processing Pipeline ff450c1f3155668447347cef1c5a0248 https://www.encodeproject.org/files/ENCFF796XKB/@@download/ENCFF796XKB.bam released s3://encode-public/2020/02/17/b7f2adcb-8da2-4b2e-a65d-6bb36a3102c0/ENCFF796XKB.bam mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF483QDA bam bam unfiltered alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000CIW/ 689759695 ENCODE Processing Pipeline cb9268dbca1791a1b585cb688ef05fd3 https://www.encodeproject.org/files/ENCFF483QDA/@@download/ENCFF483QDA.bam released s3://encode-public/2020/09/03/5177c3c7-6747-41a2-91c4-6f02024ccb05/ENCFF483QDA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF794GFC bam bam unfiltered alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF860HKY/, /files/ENCFF110MCL/, /files/ENCFF955HWE/, /files/ENCFF000CIU/ 3496800356 ENCODE Processing Pipeline 47ce029a483f66e9a305eaa4c4b2d0ed https://www.encodeproject.org/files/ENCFF794GFC/@@download/ENCFF794GFC.bam released s3://encode-public/2020/09/03/950d0791-78af-44be-b9ae-380779ff49bb/ENCFF794GFC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF741EOF bam bam unfiltered alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF859VNG/, /files/ENCFF110MCL/, /files/ENCFF412GJA/ 2276918469 ENCODE Processing Pipeline 4a6422ee5a62d2af8a6f443fd21dad9f https://www.encodeproject.org/files/ENCFF741EOF/@@download/ENCFF741EOF.bam released s3://encode-public/2020/09/03/aaa74542-0839-4589-98f8-cd59b682941e/ENCFF741EOF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF156ACM bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000CIW/ 212429970 ENCODE Processing Pipeline 0a6570c2af132b1d9e80eed28a3fed5e https://www.encodeproject.org/files/ENCFF156ACM/@@download/ENCFF156ACM.bam released s3://encode-public/2020/09/03/3cab3b52-a0f3-4882-99c6-51bcceafca17/ENCFF156ACM.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF259GEL bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF860HKY/, /files/ENCFF110MCL/, /files/ENCFF955HWE/, /files/ENCFF000CIU/ 2114682041 ENCODE Processing Pipeline 24384104a1915dda7c7fd65d6413e14f https://www.encodeproject.org/files/ENCFF259GEL/@@download/ENCFF259GEL.bam released s3://encode-public/2020/09/03/2a3e9e4e-23b7-43d6-a5f4-cabb1eaa9ae9/ENCFF259GEL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF550NYK bam bam alignments GRCh38 ENCSR000APT Control ChIP-seq /human-donors/ENCDO759UVX/ CL:0002551 fibroblast of dermis primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF859VNG/, /files/ENCFF110MCL/, /files/ENCFF412GJA/ 1633043489 ENCODE Processing Pipeline d24b7356552d16df4b326545f70c5d7d https://www.encodeproject.org/files/ENCFF550NYK/@@download/ENCFF550NYK.bam released s3://encode-public/2020/09/03/3f8ee7f4-5581-4eaa-8a36-8daaf0cf8560/ENCFF550NYK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, inconsistent platforms extremely low read depth ENCFF001KNR bam bam alignments mm9 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KOE/ 923419178 Bing Ren, UCSD 4fad67f2db8a904513b33ee5e3d5d344 https://www.encodeproject.org/files/ENCFF001KNR/@@download/ENCFF001KNR.bam archived s3://encode-public/2011/12/23/724d6311-f4f8-4e45-a95b-6a1e9b242bfc/ENCFF001KNR.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001KNS bam bam alignments mm9 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 45 /files/ENCFF001KNZ/ 887403956 Bing Ren, UCSD 15383ed49e7dcb8cde6be43c82cb1d78 https://www.encodeproject.org/files/ENCFF001KNS/@@download/ENCFF001KNS.bam archived s3://encode-public/2011/12/23/5b6cbee4-3d96-4b96-8436-b13597eb7de5/ENCFF001KNS.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001KNT bigWig bigWig signal mm9 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KNR/, /files/ENCFF001KNS/ 83870364 Bing Ren, UCSD bbf171253808bf9e3df20e9ea01f36f8 https://www.encodeproject.org/files/ENCFF001KNT/@@download/ENCFF001KNT.bigWig archived s3://encode-public/2011/12/23/b48322bc-6b66-4300-9deb-e4133c5b4518/ENCFF001KNT.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001KNZ fastq fastq reads ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 45 single-ended 847600537 Bing Ren, UCSD 5dc745d815ba3dbeade9d5a1da934e3d https://www.encodeproject.org/files/ENCFF001KNZ/@@download/ENCFF001KNZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/6ce301ad-4c5d-4fc6-baa0-2ce18ece4b26/ENCFF001KNZ.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001KOE fastq fastq reads ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 single-ended 920801829 Bing Ren, UCSD 6b9237385a7bc8e2bab763d1d5bfcc19 https://www.encodeproject.org/files/ENCFF001KOE/@@download/ENCFF001KOE.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/bc63ac3d-fc9c-4053-8189-3fc8bc124173/ENCFF001KOE.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF686FUE bam bam unfiltered alignments mm10-minimal ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001KOE/ 1038446796 J. Michael Cherry, Stanford 402ac1ef221b56dae309723f67002691 https://www.encodeproject.org/files/ENCFF686FUE/@@download/ENCFF686FUE.bam archived s3://encode-public/2015/02/09/b657873d-f4eb-4394-9e62-91020b2c1d24/ENCFF686FUE.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF461CYM bam bam unfiltered alignments mm10-minimal ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 45 /files/ENCFF806TVZ/, /files/ENCFF001KNZ/ 963092270 J. Michael Cherry, Stanford 1b6be9440470210f179ac77993754d0a https://www.encodeproject.org/files/ENCFF461CYM/@@download/ENCFF461CYM.bam archived s3://encode-public/2015/02/09/5f94f02c-2b40-40e8-bfd5-2ca69dfc358f/ENCFF461CYM.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF735UNG bam bam alignments mm10-minimal ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 45 /files/ENCFF806TVZ/, /files/ENCFF001KNZ/ 669554743 ENCODE Processing Pipeline e8d0b066666633b353c20f91586d48a4 https://www.encodeproject.org/files/ENCFF735UNG/@@download/ENCFF735UNG.bam archived s3://encode-public/2015/05/24/f51d720c-45a2-4402-a5a0-36fefee46edc/ENCFF735UNG.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF094RYR bam bam alignments mm10-minimal ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001KOE/ 396007896 ENCODE Processing Pipeline 6f12e338d880b844b4e457da407aef7c https://www.encodeproject.org/files/ENCFF094RYR/@@download/ENCFF094RYR.bam archived s3://encode-public/2015/05/24/d42829cf-b7e8-424d-85ed-eb2bb60aa443/ENCFF094RYR.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF414IRO bam bam unfiltered alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KOE/, /files/ENCFF309GLL/ 1013679023 ENCODE Processing Pipeline 65fbacbf0f48a2414a7598e2e764785d https://www.encodeproject.org/files/ENCFF414IRO/@@download/ENCFF414IRO.bam released s3://encode-public/2020/10/12/eaba2532-9f14-4817-b0ae-4a3aaae4d553/ENCFF414IRO.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF667PBW bam bam unfiltered alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KOE/ 1042199582 ENCODE Processing Pipeline 758437d451eb3474d94adb504932861a https://www.encodeproject.org/files/ENCFF667PBW/@@download/ENCFF667PBW.bam released s3://encode-public/2016/10/26/91f68c68-bcd5-4a83-b789-8c56e2a0ec53/ENCFF667PBW.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF443AQP bam bam alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KOE/ 395976439 ENCODE Processing Pipeline 7b0f96ab3d57452c04216c811acd9d19 https://www.encodeproject.org/files/ENCFF443AQP/@@download/ENCFF443AQP.bam released s3://encode-public/2016/10/26/4bbf3fba-be0c-47f1-91a4-d100215a592a/ENCFF443AQP.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF281YWL bam bam unfiltered alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KNZ/ 832906907 ENCODE Processing Pipeline 4923bbd69683e8787b96129288b539f8 https://www.encodeproject.org/files/ENCFF281YWL/@@download/ENCFF281YWL.bam released s3://encode-public/2016/11/28/696b2d66-b738-4730-93d0-82ee6dbf573f/ENCFF281YWL.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF171WKN bam bam alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KNZ/ 550113063 ENCODE Processing Pipeline 6f6b7dfaf384947b2e7c97cc48e84a45 https://www.encodeproject.org/files/ENCFF171WKN/@@download/ENCFF171WKN.bam released s3://encode-public/2016/11/28/ece6de17-5f16-4552-a395-a136b33b0e5f/ENCFF171WKN.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF415XFI bam bam unfiltered alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KNZ/, /files/ENCFF309GLL/ 815835365 ENCODE Processing Pipeline 8e5055952d3cfd25388608ecc03ec18e https://www.encodeproject.org/files/ENCFF415XFI/@@download/ENCFF415XFI.bam released s3://encode-public/2020/10/12/b1d596c3-86fc-469b-b291-b49d13880b5a/ENCFF415XFI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF583XVV bam bam alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KOE/, /files/ENCFF309GLL/ 436896682 ENCODE Processing Pipeline d2f27f57f5a89bf06f2f9d87af5cf891 https://www.encodeproject.org/files/ENCFF583XVV/@@download/ENCFF583XVV.bam released s3://encode-public/2020/10/12/b02dc41c-dcdd-4d9f-ad17-09e0dcb5c6e7/ENCFF583XVV.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF199EPT bam bam alignments mm10 ENCSR000CDT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KNZ/, /files/ENCFF309GLL/ 590215935 ENCODE Processing Pipeline 06ed7af864e3454f15773ce726a3461b https://www.encodeproject.org/files/ENCFF199EPT/@@download/ENCFF199EPT.bam released s3://encode-public/2020/10/12/5dc7b6c9-2544-4ab4-8760-5f75968517d1/ENCFF199EPT.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF000WHL bam bam alignments hg19 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WHY/ 567204316 Michael Snyder, Stanford 862260a7cf61a5c544814004df093728 https://www.encodeproject.org/files/ENCFF000WHL/@@download/ENCFF000WHL.bam archived s3://encode-public/2012/07/01/962222b1-e65d-4547-9354-8fa32a13ef09/ENCFF000WHL.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WHM bam bam alignments hg19 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WHZ/ 563491048 Michael Snyder, Stanford 33f7cdcee87042eb56300d2d427ab67d https://www.encodeproject.org/files/ENCFF000WHM/@@download/ENCFF000WHM.bam archived s3://encode-public/2012/07/01/378b1ced-4351-418e-a7c6-70679dcdfff0/ENCFF000WHM.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WHN bigWig bigWig signal hg19 ENCSR000EAK Control ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 345976981 Michael Snyder, Stanford b7ab965229d9787db803d73eacd5ce86 https://www.encodeproject.org/files/ENCFF000WHN/@@download/ENCFF000WHN.bigWig archived s3://encode-public/2012/07/01/34dabd20-40c8-4dd2-9a9b-3027f4e87abd/ENCFF000WHN.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WHY fastq fastq reads ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 424432011 Michael Snyder, Stanford 8d989e1076d9c502cb458db26de03c5a https://www.encodeproject.org/files/ENCFF000WHY/@@download/ENCFF000WHY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/f87f30ce-9305-4801-b742-6d8e75f9fd4c/ENCFF000WHY.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF000WHZ fastq fastq reads ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 423373151 Michael Snyder, Stanford fb0a18ab162c050e87690fa4d0ac5490 https://www.encodeproject.org/files/ENCFF000WHZ/@@download/ENCFF000WHZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/4878acc7-ecd0-4809-9624-446949f0f5db/ENCFF000WHZ.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF912UTQ bam bam unfiltered alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WHZ/, /files/ENCFF643CGH/ 566884326 ENCODE Processing Pipeline 397b37972afe68f357db0615079fae3a https://www.encodeproject.org/files/ENCFF912UTQ/@@download/ENCFF912UTQ.bam released s3://encode-public/2016/10/26/eda3126c-8d56-46f5-ace4-451a16f9ae38/ENCFF912UTQ.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF253BRM bam bam unfiltered alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WHY/, /files/ENCFF643CGH/ 570800596 ENCODE Processing Pipeline da17848219abc121aeb0e80a6edbe63b https://www.encodeproject.org/files/ENCFF253BRM/@@download/ENCFF253BRM.bam released s3://encode-public/2016/10/26/a1a37c6b-61a1-482b-ba4b-2ec3fe5b9a7c/ENCFF253BRM.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF459PNQ bam bam alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WHZ/, /files/ENCFF643CGH/ 219031790 ENCODE Processing Pipeline 1b5e6f4d6d0c9d1a9f7b98e15c1c2d18 https://www.encodeproject.org/files/ENCFF459PNQ/@@download/ENCFF459PNQ.bam released s3://encode-public/2016/10/26/da5c6363-2484-4873-8c1b-17045e562237/ENCFF459PNQ.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF629OTM bam bam alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WHY/, /files/ENCFF643CGH/ 201146692 ENCODE Processing Pipeline 8d0aeeb5c35aa9e25b2f76bcb3884275 https://www.encodeproject.org/files/ENCFF629OTM/@@download/ENCFF629OTM.bam released s3://encode-public/2016/10/26/44eddffc-c1e5-401f-aeaa-65e47d16c8a5/ENCFF629OTM.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF726GUM bam bam alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WHZ/ 229701911 ENCODE Processing Pipeline 79037de267c404c09fe450d2d4b1827c https://www.encodeproject.org/files/ENCFF726GUM/@@download/ENCFF726GUM.bam released s3://encode-public/2020/10/27/ab49d5cb-79a3-4cbe-8113-a132b8725e2d/ENCFF726GUM.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF141MIC bam bam unfiltered alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WHZ/ 528997455 ENCODE Processing Pipeline 0e7efba408acf18f6fe4ff39b9f5fc4b https://www.encodeproject.org/files/ENCFF141MIC/@@download/ENCFF141MIC.bam released s3://encode-public/2020/10/27/27dd2660-13d6-40d0-9ac0-ea4e37a15b84/ENCFF141MIC.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF062IRT bam bam unfiltered alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WHY/ 528927118 ENCODE Processing Pipeline e6f47ac8297f724d7e86146731b25c5a https://www.encodeproject.org/files/ENCFF062IRT/@@download/ENCFF062IRT.bam released s3://encode-public/2020/10/27/19e8c41e-0f5e-41c7-b4ea-6d89afc84bc1/ENCFF062IRT.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF046OHO bam bam alignments GRCh38 ENCSR000EAK Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WHY/ 212901448 ENCODE Processing Pipeline 407674e5d27f677dc31052e9be92b060 https://www.encodeproject.org/files/ENCFF046OHO/@@download/ENCFF046OHO.bam released s3://encode-public/2020/10/27/2735d1e8-8521-47e5-b007-48b603fde396/ENCFF046OHO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF001ZUI fastq fastq reads ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 603380631 Bing Ren, UCSD 2c24d2e9b33a8f9a2678427bf75e4ff4 SRA:SRR3651311 https://www.encodeproject.org/files/ENCFF001ZUI/@@download/ENCFF001ZUI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/389c1633-f547-4c3c-ae7f-3239b8c10178/ENCFF001ZUI.fastq.gz low read depth, low read length ENCFF001ZUJ fastq fastq reads ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 525668292 Bing Ren, UCSD 898027ed592b360dfc6a36e74707ced8 SRA:SRR3651312 https://www.encodeproject.org/files/ENCFF001ZUJ/@@download/ENCFF001ZUJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/44404562-1698-46a2-b173-20b04d81d914/ENCFF001ZUJ.fastq.gz low read depth, low read length ENCFF085KXU bam bam unfiltered alignments mm10-minimal ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUI/ 789625373 ENCODE Processing Pipeline a5b6930230403b3f98b95c4cc0298566 https://www.encodeproject.org/files/ENCFF085KXU/@@download/ENCFF085KXU.bam archived s3://encode-public/2015/02/09/2c23e70d-c49e-45fc-bf73-2167fcd207ae/ENCFF085KXU.bam low read depth, low read length ENCFF074QPO bam bam unfiltered alignments mm10-minimal ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUJ/ 692694424 ENCODE Processing Pipeline 49408470a879c4c50e55e085af07a9e8 https://www.encodeproject.org/files/ENCFF074QPO/@@download/ENCFF074QPO.bam archived s3://encode-public/2015/02/09/92809907-ac3a-4670-9217-a30d5eba7e09/ENCFF074QPO.bam low read depth, low read length ENCFF265KAG bam bam alignments mm10-minimal ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUI/ 494305032 ENCODE Processing Pipeline 17b47d3908de6178c77b04698d67d241 https://www.encodeproject.org/files/ENCFF265KAG/@@download/ENCFF265KAG.bam archived s3://encode-public/2015/03/11/b9e4baaa-4c54-4c04-a1fe-e14c0a47793d/ENCFF265KAG.bam low read depth, low read length ENCFF851KTA bam bam alignments mm10-minimal ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUJ/ 436066949 ENCODE Processing Pipeline 5efacfe83be1b576e2746d2dc149ade9 https://www.encodeproject.org/files/ENCFF851KTA/@@download/ENCFF851KTA.bam archived s3://encode-public/2015/03/11/cb0dfde6-0038-4f82-8d56-40ffabfb27ae/ENCFF851KTA.bam low read depth, low read length ENCFF184CUE bam bam unfiltered alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUJ/ 693815331 ENCODE Processing Pipeline 65960e6aa686f98e7ce7cfe24aa3291b https://www.encodeproject.org/files/ENCFF184CUE/@@download/ENCFF184CUE.bam released s3://encode-public/2016/05/20/3de77581-da98-4e8c-9f38-a82e05dcc97f/ENCFF184CUE.bam ENCODE3 mm10 archived low read depth, low read length ENCFF376FGM bam bam unfiltered alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUI/ 790753627 ENCODE Processing Pipeline 24bf5c83e5b77b41596b7cfc0ba0dfea https://www.encodeproject.org/files/ENCFF376FGM/@@download/ENCFF376FGM.bam released s3://encode-public/2016/05/20/f047a3c3-b5f8-48db-8a74-dcb79fff3ceb/ENCFF376FGM.bam ENCODE3 mm10 archived low read depth, low read length ENCFF512NUW bam bam alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUI/ 494136712 ENCODE Processing Pipeline cb55bf8dcd342c3359011437e543b2c2 https://www.encodeproject.org/files/ENCFF512NUW/@@download/ENCFF512NUW.bam released s3://encode-public/2016/05/20/4ab9df7d-7b70-40f2-8c38-04f1791e988a/ENCFF512NUW.bam ENCODE3 mm10 archived low read depth, low read length ENCFF377IXU bam bam alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUJ/ 435916622 ENCODE Processing Pipeline 5a0e9f5c3b0d69548b089c5185c4f49f https://www.encodeproject.org/files/ENCFF377IXU/@@download/ENCFF377IXU.bam released s3://encode-public/2016/05/20/5e4ae56b-82a0-429d-af73-32d8020ce661/ENCFF377IXU.bam ENCODE3 mm10 archived low read depth, low read length ENCFF320CJM bam bam unfiltered alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUJ/ 675078270 ENCODE Processing Pipeline d21b0075b4a538e02e03aef221fec973 https://www.encodeproject.org/files/ENCFF320CJM/@@download/ENCFF320CJM.bam released s3://encode-public/2020/10/08/85be2458-f790-4b2e-8e45-0e750c178e16/ENCFF320CJM.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF655TQN bam bam unfiltered alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUI/ 768983850 ENCODE Processing Pipeline 63b5280de0dab6f656abbcf7611059b4 https://www.encodeproject.org/files/ENCFF655TQN/@@download/ENCFF655TQN.bam released s3://encode-public/2020/10/08/bf339486-36c9-4c99-b4e0-97905dae1571/ENCFF655TQN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF004TZJ bam bam alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUJ/ 468334379 ENCODE Processing Pipeline 5766d30554817979378e68ec1e52bee3 https://www.encodeproject.org/files/ENCFF004TZJ/@@download/ENCFF004TZJ.bam released s3://encode-public/2020/10/08/0df2aa34-aa97-48e3-8e42-baf7acef8d6e/ENCFF004TZJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF815MGY bam bam alignments mm10 ENCSR068AQC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUI/ 530383364 ENCODE Processing Pipeline 772c4538f7c630d7a49f113a20d48a8c https://www.encodeproject.org/files/ENCFF815MGY/@@download/ENCFF815MGY.bam released s3://encode-public/2020/10/08/04672626-414e-4666-a3a2-5fbd26d290a4/ENCFF815MGY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF000CQE bam bam alignments hg19 ENCSR000AMZ Control ChIP-seq /human-donors/ENCDO156MSV/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000CQO/ 264011715 Bradley Bernstein, Broad e9e18f955050bb23f9b2669c8af1ffd8 https://www.encodeproject.org/files/ENCFF000CQE/@@download/ENCFF000CQE.bam archived s3://encode-public/2010/11/16/fdf8a002-053d-40e6-b918-4df783c59678/ENCFF000CQE.bam Lab custom hg19 archived low read length insufficient read depth extremely low read depth ENCFF000CQF bam bam alignments hg19 ENCSR000AMZ Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000CQP/ 420361049 Bradley Bernstein, Broad 0f5fc4384e462861f1d954fa465156ef https://www.encodeproject.org/files/ENCFF000CQF/@@download/ENCFF000CQF.bam archived s3://encode-public/2010/11/16/340734ef-cefe-4e65-af55-dd467bbc1b34/ENCFF000CQF.bam Lab custom hg19 archived low read length insufficient read depth extremely low read depth ENCFF000CQH bigWig bigWig signal hg19 ENCSR000AMZ Control ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 364850744 Bradley Bernstein, Broad 568f007de128cbac5f6ab07d6392cef9 https://www.encodeproject.org/files/ENCFF000CQH/@@download/ENCFF000CQH.bigWig archived s3://encode-public/2010/11/16/3432de55-e146-4b4c-a68d-3b18c640fe31/ENCFF000CQH.bigWig Lab custom hg19 archived low read length insufficient read depth extremely low read depth ENCFF000CQO fastq fastq reads ENCSR000AMZ Control ChIP-seq /human-donors/ENCDO156MSV/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 single-ended 345893602 Bradley Bernstein, Broad d8dfa70f50caa3c081b0103ac535be3f SRA:SRR14638118 https://www.encodeproject.org/files/ENCFF000CQO/@@download/ENCFF000CQO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/e8f06a5e-644d-40d8-a018-36855f9dc278/ENCFF000CQO.fastq.gz low read length insufficient read depth extremely low read depth ENCFF000CQP fastq fastq reads ENCSR000AMZ Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 single-ended 394396604 Bradley Bernstein, Broad 19bdd993ab52ccb00f149ab8d16fd2fc SRA:SRR14638119 https://www.encodeproject.org/files/ENCFF000CQP/@@download/ENCFF000CQP.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/3d6425c4-1c01-42d6-8455-475eaa37521e/ENCFF000CQP.fastq.gz low read length insufficient read depth extremely low read depth ENCFF554LJZ bam bam unfiltered alignments GRCh38 ENCSR000AMZ Control ChIP-seq /human-donors/ENCDO156MSV/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000CQO/, /files/ENCFF643CGH/ 421132914 ENCODE Processing Pipeline 4a3e92aac38937260dbf19b217bfdc21 https://www.encodeproject.org/files/ENCFF554LJZ/@@download/ENCFF554LJZ.bam released s3://encode-public/2016/08/09/3e3b0bf5-7936-4d92-9c38-5d4e146be118/ENCFF554LJZ.bam ENCODE3 GRCh38 archived low read length insufficient read depth extremely low read depth ENCFF681UKF bam bam alignments GRCh38 ENCSR000AMZ Control ChIP-seq /human-donors/ENCDO269AAA/ CL:0002553 fibroblast of lung primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000CQP/ 370903303 ENCODE Processing Pipeline df0a893e83979e53b1555ba10b0becda https://www.encodeproject.org/files/ENCFF681UKF/@@download/ENCFF681UKF.bam released s3://encode-public/2016/08/09/fa49cbf4-b457-460a-bfdf-b9fe82bc0091/ENCFF681UKF.bam 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https://www.encodeproject.org/files/ENCFF304LCV/@@download/ENCFF304LCV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/7539afb8-dd8b-4171-8c54-a72d6e408ab0/ENCFF304LCV.fastq.gz ENCFF318TQL fastq fastq reads ENCSR846OTK Control ChIP-seq /human-donors/ENCDO853VGZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-12-08 ENCODE 200-600 1 1_2 76 single-ended 375668894 Bradley Bernstein, Broad 5ca88ecda386432d6e25fe9e9ca0ce37 https://www.encodeproject.org/files/ENCFF318TQL/@@download/ENCFF318TQL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/0af9e1a8-42e2-486d-8245-45b57b16650c/ENCFF318TQL.fastq.gz ENCFF233DLH fastq fastq reads ENCSR846OTK Control ChIP-seq /human-donors/ENCDO853VGZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-12-08 ENCODE 200-600 1 1_1 76 single-ended 324374491 Bradley Bernstein, Broad cc5c8b835af38c28beb5b0b5d2d460f1 https://www.encodeproject.org/files/ENCFF233DLH/@@download/ENCFF233DLH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/fdd28851-7036-4834-9dcb-35a629002b3d/ENCFF233DLH.fastq.gz ENCFF910BQQ bam bam alignments GRCh38 ENCSR846OTK Control ChIP-seq /human-donors/ENCDO853VGZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-12-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF599AEW/, /files/ENCFF435SDQ/, /files/ENCFF233DLH/, /files/ENCFF120DFD/, /files/ENCFF201KWA/, /files/ENCFF304LCV/, /files/ENCFF318TQL/, /files/ENCFF432GFD/ 2384216378 ENCODE Processing Pipeline 2bf89bf3ea42d87ee928dd6ef1461d79 https://www.encodeproject.org/files/ENCFF910BQQ/@@download/ENCFF910BQQ.bam released s3://encode-public/2021/09/15/0fcfa212-b81e-403d-9c41-d5109fedfcd5/ENCFF910BQQ.bam ENCODE4 GRCh38 released ENCFF861MNK bam bam unfiltered alignments GRCh38 ENCSR846OTK Control ChIP-seq /human-donors/ENCDO853VGZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-12-08 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF599AEW/, /files/ENCFF435SDQ/, /files/ENCFF233DLH/, /files/ENCFF120DFD/, /files/ENCFF201KWA/, /files/ENCFF304LCV/, /files/ENCFF318TQL/, /files/ENCFF432GFD/ 2809337145 ENCODE Processing Pipeline 5ba3ea2fc6f1784146f676da61bde956 https://www.encodeproject.org/files/ENCFF861MNK/@@download/ENCFF861MNK.bam released s3://encode-public/2021/09/15/8a880a98-9d3b-4bdd-a404-03c15c920307/ENCFF861MNK.bam ENCODE4 GRCh38 released ENCFF429RUH fastq fastq reads ENCSR484UJP Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': 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'6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF429RUH/ 843227950 Kevin White, UChicago 29ce156183264e5ee4c81e50235aa894 https://www.encodeproject.org/files/ENCFF618ZIN/@@download/ENCFF618ZIN.bam released s3://encode-public/2015/08/07/adf875be-5525-41c7-8e41-6c2011aaeaa1/ENCFF618ZIN.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF273SPV bigWig bigWig read-depth normalized signal ce10 ENCSR484UJP Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF618ZIN/ 9967597 Kevin White, UChicago 429d4d79797d8ed53a4ea6d32b0d6163 https://www.encodeproject.org/files/ENCFF273SPV/@@download/ENCFF273SPV.bigWig released s3://encode-public/2015/10/02/960ae493-f64b-4537-9cd0-418b98365e31/ENCFF273SPV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF007EMN bigWig bigWig signal of unique reads ce10 ENCSR484UJP Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF618ZIN/ 9968385 Kevin White, UChicago 5def0a43ad46a43528c8e1fd25a3bddd https://www.encodeproject.org/files/ENCFF007EMN/@@download/ENCFF007EMN.bigWig released s3://encode-public/2015/10/02/197b4961-beed-4e94-99f0-b514077d099b/ENCFF007EMN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF920KHR bam bam alignments ce11 ENCSR484UJP Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF429RUH/ 843907868 Kevin White, UChicago 2f00f7515f54de40ad6c7152cb06a1ee https://www.encodeproject.org/files/ENCFF920KHR/@@download/ENCFF920KHR.bam released s3://encode-public/2016/01/20/6dea30b3-a9f0-4bbe-88f8-a53d83961d2e/ENCFF920KHR.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF942LSE bigWig bigWig signal of unique reads ce11 ENCSR484UJP Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF920KHR/ 9964479 Kevin White, UChicago 70005f10c056caef41fa8f45f910aeb3 https://www.encodeproject.org/files/ENCFF942LSE/@@download/ENCFF942LSE.bigWig released s3://encode-public/2016/02/03/4e1cfa4f-05d3-43b9-a727-3f49afb51ea7/ENCFF942LSE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF323UJN bigWig bigWig read-depth normalized signal ce11 ENCSR484UJP Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF920KHR/ 9958073 Kevin White, UChicago 04a717259bb1430cd482f5a9c6b578ce https://www.encodeproject.org/files/ENCFF323UJN/@@download/ENCFF323UJN.bigWig released s3://encode-public/2016/02/03/f9d72878-256b-4b16-b7da-75a53abbceeb/ENCFF323UJN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF073LPU fastq fastq reads ENCSR896VBS Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 598010310 Kevin White, UChicago b03b1c829e0f37c2f5cf295565d4ce36 https://www.encodeproject.org/files/ENCFF073LPU/@@download/ENCFF073LPU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/eb838ff3-6e16-4307-b665-bc1fc09fb196/ENCFF073LPU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF665XRU bam bam alignments ce10 ENCSR896VBS Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF073LPU/ 859824220 Kevin White, UChicago 52716a829b223691fbb422a64d4bc917 https://www.encodeproject.org/files/ENCFF665XRU/@@download/ENCFF665XRU.bam released s3://encode-public/2015/08/19/6beda3d8-3579-47ad-907e-eba46f21e989/ENCFF665XRU.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF272YNL bigWig bigWig read-depth normalized signal ce10 ENCSR896VBS Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF665XRU/ 9943203 Kevin White, UChicago c2387632254c887763c587600cc39d10 https://www.encodeproject.org/files/ENCFF272YNL/@@download/ENCFF272YNL.bigWig released s3://encode-public/2015/10/02/fbfadc34-3731-4007-bc25-0b4bfc6a2653/ENCFF272YNL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF538GPD bigWig bigWig signal of unique reads ce10 ENCSR896VBS Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF665XRU/ 9943346 Kevin White, UChicago a3fb4a4a933dbd524c742a14d74647ca https://www.encodeproject.org/files/ENCFF538GPD/@@download/ENCFF538GPD.bigWig released s3://encode-public/2015/10/02/1a4c9b44-8031-413f-a344-2811fe194090/ENCFF538GPD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF041HQK bam bam alignments ce11 ENCSR896VBS Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF073LPU/ 860549089 Kevin White, UChicago dbcd2d4ab794132676d7d285d3bc78a9 https://www.encodeproject.org/files/ENCFF041HQK/@@download/ENCFF041HQK.bam released s3://encode-public/2016/01/20/3cb5d00d-e646-42f0-b497-ee75de2c98a7/ENCFF041HQK.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF407QEH bigWig bigWig signal of unique reads ce11 ENCSR896VBS Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF041HQK/ 9940590 Kevin White, UChicago 42131f4e54422d006d258cd809a1e189 https://www.encodeproject.org/files/ENCFF407QEH/@@download/ENCFF407QEH.bigWig released s3://encode-public/2016/02/03/3f730668-2609-4500-a111-903db5afd0f2/ENCFF407QEH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF211QTO bigWig bigWig read-depth normalized signal ce11 ENCSR896VBS Control ChIP-seq /worm-donors/ENCDO243EXZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175698/'], '@type': ['Target', 'Item'], 'name': 'tbx-2-celegans', 'label': 'tbx-2', '@id': '/targets/tbx-2-celegans/', 'title': 'tbx-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2358d14f-64e9-4d72-9357-7b8cfe336e68', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF041HQK/ 9940676 Kevin White, UChicago 17fb4297902c3f7e8d414e200772cdf6 https://www.encodeproject.org/files/ENCFF211QTO/@@download/ENCFF211QTO.bigWig released s3://encode-public/2016/02/03/a13ebd9c-cd4e-4615-bfb4-71de2da99944/ENCFF211QTO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF389QTM fastq fastq reads ENCSR709XYX Control ChIP-seq /worm-donors/ENCDO340NPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174286/'], '@type': ['Target', 'Item'], 'name': 'swsn-7-celegans', 'label': 'swsn-7', '@id': '/targets/swsn-7-celegans/', 'title': 'swsn-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '09aa77a5-0357-43d5-a92f-30045579048c', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 720537670 Kevin White, UChicago 11ec0c07fbf7ed17617323ce90f4254f https://www.encodeproject.org/files/ENCFF389QTM/@@download/ENCFF389QTM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/0a0198fa-ea58-42d3-a465-4e81bde2b9c1/ENCFF389QTM.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF277NYW bam bam alignments ce10 ENCSR709XYX Control ChIP-seq /worm-donors/ENCDO340NPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174286/'], '@type': ['Target', 'Item'], 'name': 'swsn-7-celegans', 'label': 'swsn-7', '@id': '/targets/swsn-7-celegans/', 'title': 'swsn-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '09aa77a5-0357-43d5-a92f-30045579048c', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF389QTM/ 1030267860 Kevin White, UChicago eefd9919f327ad29460bf7c7c37b1b79 https://www.encodeproject.org/files/ENCFF277NYW/@@download/ENCFF277NYW.bam released s3://encode-public/2015/08/07/df40d569-b294-4c07-b523-993d63691d22/ENCFF277NYW.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF476MFF bigWig bigWig signal of unique reads ce10 ENCSR709XYX Control ChIP-seq /worm-donors/ENCDO340NPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174286/'], '@type': ['Target', 'Item'], 'name': 'swsn-7-celegans', 'label': 'swsn-7', '@id': '/targets/swsn-7-celegans/', 'title': 'swsn-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '09aa77a5-0357-43d5-a92f-30045579048c', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF277NYW/ 10011277 Kevin White, UChicago 411893d34a89bed1b08d3c022167dfd6 https://www.encodeproject.org/files/ENCFF476MFF/@@download/ENCFF476MFF.bigWig released s3://encode-public/2015/10/02/2bbbd683-48d6-413b-9c8f-316559eddb54/ENCFF476MFF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF454DZI bigWig bigWig read-depth normalized signal ce10 ENCSR709XYX Control ChIP-seq /worm-donors/ENCDO340NPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174286/'], '@type': ['Target', 'Item'], 'name': 'swsn-7-celegans', 'label': 'swsn-7', '@id': '/targets/swsn-7-celegans/', 'title': 'swsn-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '09aa77a5-0357-43d5-a92f-30045579048c', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF277NYW/ 10040162 Kevin White, UChicago e888c8269acedcda6e33a3d28ee0d58a https://www.encodeproject.org/files/ENCFF454DZI/@@download/ENCFF454DZI.bigWig released s3://encode-public/2015/10/02/bef5d50b-0ec4-4046-a68e-ab7af4c0a71d/ENCFF454DZI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF459PXW bam bam alignments ce11 ENCSR709XYX Control ChIP-seq /worm-donors/ENCDO340NPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174286/'], '@type': ['Target', 'Item'], 'name': 'swsn-7-celegans', 'label': 'swsn-7', '@id': '/targets/swsn-7-celegans/', 'title': 'swsn-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '09aa77a5-0357-43d5-a92f-30045579048c', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF389QTM/ 1031116193 Kevin White, UChicago 93c5d705e92ec4742c09aa8bc0e80c58 https://www.encodeproject.org/files/ENCFF459PXW/@@download/ENCFF459PXW.bam released s3://encode-public/2016/01/20/fa53ce7e-5ae3-4452-92e8-61f4e23412db/ENCFF459PXW.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF560RFC bigWig bigWig signal of unique reads ce11 ENCSR709XYX Control ChIP-seq /worm-donors/ENCDO340NPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174286/'], '@type': ['Target', 'Item'], 'name': 'swsn-7-celegans', 'label': 'swsn-7', '@id': '/targets/swsn-7-celegans/', 'title': 'swsn-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '09aa77a5-0357-43d5-a92f-30045579048c', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF459PXW/ 10014337 Kevin White, UChicago 0646da346234ac310d76a53511fd9a00 https://www.encodeproject.org/files/ENCFF560RFC/@@download/ENCFF560RFC.bigWig released s3://encode-public/2016/02/03/4b768033-4f90-4208-9b38-4db95b0b7c17/ENCFF560RFC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF907YBZ bigWig bigWig read-depth normalized signal ce11 ENCSR709XYX Control ChIP-seq /worm-donors/ENCDO340NPN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174286/'], '@type': ['Target', 'Item'], 'name': 'swsn-7-celegans', 'label': 'swsn-7', '@id': '/targets/swsn-7-celegans/', 'title': 'swsn-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '09aa77a5-0357-43d5-a92f-30045579048c', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF459PXW/ 10027919 Kevin White, UChicago b3bdcdd7f2a4f18484db5a443febb307 https://www.encodeproject.org/files/ENCFF907YBZ/@@download/ENCFF907YBZ.bigWig released s3://encode-public/2016/02/03/dc8851ba-2ac8-4cee-9cbe-221f62128a1d/ENCFF907YBZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF006LJK fastq fastq reads ENCSR966WUX Control ChIP-seq /worm-donors/ENCDO654UXM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175546/'], '@type': ['Target', 'Item'], 'name': 'nhr-20-celegans', 'label': 'nhr-20', '@id': '/targets/nhr-20-celegans/', 'title': 'nhr-20 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '009fd6d9-4d54-4c6e-8379-701ef28aed76', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 694130124 Kevin White, UChicago 52d190fe73d1c3f6695ca0ca6e6494ed https://www.encodeproject.org/files/ENCFF006LJK/@@download/ENCFF006LJK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/5ae18474-f390-4379-ba9b-3b31155d5ce2/ENCFF006LJK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF982EDO bam bam alignments ce10 ENCSR966WUX Control ChIP-seq /worm-donors/ENCDO654UXM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175546/'], '@type': ['Target', 'Item'], 'name': 'nhr-20-celegans', 'label': 'nhr-20', '@id': '/targets/nhr-20-celegans/', 'title': 'nhr-20 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '009fd6d9-4d54-4c6e-8379-701ef28aed76', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF006LJK/ 981814757 Kevin White, UChicago 434d939faca0b154473f1b4b9e011296 https://www.encodeproject.org/files/ENCFF982EDO/@@download/ENCFF982EDO.bam released s3://encode-public/2015/08/07/8bea918c-f7a6-4b35-84bf-562926a82377/ENCFF982EDO.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF063JFJ bigWig bigWig read-depth normalized signal ce10 ENCSR966WUX Control ChIP-seq /worm-donors/ENCDO654UXM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175546/'], '@type': ['Target', 'Item'], 'name': 'nhr-20-celegans', 'label': 'nhr-20', '@id': '/targets/nhr-20-celegans/', 'title': 'nhr-20 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '009fd6d9-4d54-4c6e-8379-701ef28aed76', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF982EDO/ 10002357 Kevin White, UChicago 22e7a46fed8c02574eadaa12c7ce109a https://www.encodeproject.org/files/ENCFF063JFJ/@@download/ENCFF063JFJ.bigWig released s3://encode-public/2015/10/02/c32cb1f5-a118-42e2-aa09-091754948752/ENCFF063JFJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF017YRX bigWig bigWig signal of unique reads ce10 ENCSR966WUX Control ChIP-seq /worm-donors/ENCDO654UXM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175546/'], '@type': ['Target', 'Item'], 'name': 'nhr-20-celegans', 'label': 'nhr-20', '@id': '/targets/nhr-20-celegans/', 'title': 'nhr-20 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '009fd6d9-4d54-4c6e-8379-701ef28aed76', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF982EDO/ 9998433 Kevin White, UChicago b77f7dda3ea8b995e4e015371b61b6e9 https://www.encodeproject.org/files/ENCFF017YRX/@@download/ENCFF017YRX.bigWig released s3://encode-public/2015/10/02/8ebb1078-58b2-4c4d-a73d-f3ef59b6b82f/ENCFF017YRX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF792RYP bam bam alignments ce11 ENCSR966WUX Control ChIP-seq /worm-donors/ENCDO654UXM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175546/'], '@type': ['Target', 'Item'], 'name': 'nhr-20-celegans', 'label': 'nhr-20', '@id': '/targets/nhr-20-celegans/', 'title': 'nhr-20 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '009fd6d9-4d54-4c6e-8379-701ef28aed76', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF006LJK/ 982629836 Kevin White, UChicago 05e576fc3f079818783d19afc5a10e8a https://www.encodeproject.org/files/ENCFF792RYP/@@download/ENCFF792RYP.bam released s3://encode-public/2016/01/19/6b11f883-9c0c-4771-a0a7-62e484115b5a/ENCFF792RYP.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF384UXP bigWig bigWig signal of unique reads ce11 ENCSR966WUX Control ChIP-seq /worm-donors/ENCDO654UXM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175546/'], '@type': ['Target', 'Item'], 'name': 'nhr-20-celegans', 'label': 'nhr-20', '@id': '/targets/nhr-20-celegans/', 'title': 'nhr-20 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '009fd6d9-4d54-4c6e-8379-701ef28aed76', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF792RYP/ 9994358 Kevin White, UChicago 149730268009f3b27dab12263003834c https://www.encodeproject.org/files/ENCFF384UXP/@@download/ENCFF384UXP.bigWig released s3://encode-public/2016/02/03/8a7df4b4-1a8f-4389-b3e0-bcc7f4ca9b36/ENCFF384UXP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF461UVW bigWig bigWig read-depth normalized signal ce11 ENCSR966WUX Control ChIP-seq /worm-donors/ENCDO654UXM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175546/'], '@type': ['Target', 'Item'], 'name': 'nhr-20-celegans', 'label': 'nhr-20', '@id': '/targets/nhr-20-celegans/', 'title': 'nhr-20 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '009fd6d9-4d54-4c6e-8379-701ef28aed76', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF792RYP/ 9995546 Kevin White, UChicago fbd79748e995a1a358a154db12930a35 https://www.encodeproject.org/files/ENCFF461UVW/@@download/ENCFF461UVW.bigWig released s3://encode-public/2016/02/03/51da6334-6d98-4ce8-8364-b34c6dbb69fe/ENCFF461UVW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF385BXW fastq fastq reads ENCSR647AIG Control ChIP-seq /worm-donors/ENCDO880CCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191242/'], '@type': ['Target', 'Item'], 'name': 'ZK185.1-celegans', 'label': 'ZK185.1', '@id': '/targets/ZK185.1-celegans/', 'title': 'ZK185.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '03443172-49cd-4e87-9ecd-75929970b1aa', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 443607876 Kevin White, UChicago 06b62c3868ff9def61fd285e33b16fc5 https://www.encodeproject.org/files/ENCFF385BXW/@@download/ENCFF385BXW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/72ff96b6-f474-43ce-89eb-3891f6ef6c13/ENCFF385BXW.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF388SAP bam bam alignments ce10 ENCSR647AIG Control ChIP-seq /worm-donors/ENCDO880CCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191242/'], '@type': ['Target', 'Item'], 'name': 'ZK185.1-celegans', 'label': 'ZK185.1', '@id': '/targets/ZK185.1-celegans/', 'title': 'ZK185.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '03443172-49cd-4e87-9ecd-75929970b1aa', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF385BXW/ 591620912 Kevin White, UChicago 2c64b821d213a19ce7d035b507cc06ea https://www.encodeproject.org/files/ENCFF388SAP/@@download/ENCFF388SAP.bam released s3://encode-public/2015/08/07/74d2b855-a5de-4790-a2f9-eb6abbffad0d/ENCFF388SAP.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF623CBC bigWig bigWig signal of unique reads ce10 ENCSR647AIG Control ChIP-seq /worm-donors/ENCDO880CCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191242/'], '@type': ['Target', 'Item'], 'name': 'ZK185.1-celegans', 'label': 'ZK185.1', '@id': '/targets/ZK185.1-celegans/', 'title': 'ZK185.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '03443172-49cd-4e87-9ecd-75929970b1aa', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF388SAP/ 10115943 Kevin White, UChicago 2d67a25af8febd6da0ff778c01d2a2de https://www.encodeproject.org/files/ENCFF623CBC/@@download/ENCFF623CBC.bigWig released s3://encode-public/2015/10/02/e7410a0d-6be1-410a-9cf5-e6b7dba007d6/ENCFF623CBC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF671YWF bigWig bigWig read-depth normalized signal ce10 ENCSR647AIG Control ChIP-seq /worm-donors/ENCDO880CCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191242/'], '@type': ['Target', 'Item'], 'name': 'ZK185.1-celegans', 'label': 'ZK185.1', '@id': '/targets/ZK185.1-celegans/', 'title': 'ZK185.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '03443172-49cd-4e87-9ecd-75929970b1aa', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF388SAP/ 10104540 Kevin White, UChicago fc4c5b6d549af21864f2c52b7778ea97 https://www.encodeproject.org/files/ENCFF671YWF/@@download/ENCFF671YWF.bigWig released s3://encode-public/2015/10/02/4d95422e-1ad5-4797-856b-ee99cab60eb4/ENCFF671YWF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF759XVK bam bam alignments ce11 ENCSR647AIG Control ChIP-seq /worm-donors/ENCDO880CCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191242/'], '@type': ['Target', 'Item'], 'name': 'ZK185.1-celegans', 'label': 'ZK185.1', '@id': '/targets/ZK185.1-celegans/', 'title': 'ZK185.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '03443172-49cd-4e87-9ecd-75929970b1aa', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF385BXW/ 592109339 Kevin White, UChicago f14a40f80bfcaf106524714d243e7eea https://www.encodeproject.org/files/ENCFF759XVK/@@download/ENCFF759XVK.bam released s3://encode-public/2016/01/20/e424ed7b-1a51-42d0-84de-fa66d0c350fe/ENCFF759XVK.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF968ASY bigWig bigWig signal of unique reads ce11 ENCSR647AIG Control ChIP-seq /worm-donors/ENCDO880CCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191242/'], '@type': ['Target', 'Item'], 'name': 'ZK185.1-celegans', 'label': 'ZK185.1', '@id': '/targets/ZK185.1-celegans/', 'title': 'ZK185.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '03443172-49cd-4e87-9ecd-75929970b1aa', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF759XVK/ 10111731 Kevin White, UChicago 5047b11433e3b88bddc211260e6d1a2f https://www.encodeproject.org/files/ENCFF968ASY/@@download/ENCFF968ASY.bigWig released s3://encode-public/2016/02/03/a752bde5-0bd2-4bbc-b544-6414fc650cd3/ENCFF968ASY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF971BGP bigWig bigWig read-depth normalized signal ce11 ENCSR647AIG Control ChIP-seq /worm-donors/ENCDO880CCK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191242/'], '@type': ['Target', 'Item'], 'name': 'ZK185.1-celegans', 'label': 'ZK185.1', '@id': '/targets/ZK185.1-celegans/', 'title': 'ZK185.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '03443172-49cd-4e87-9ecd-75929970b1aa', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF759XVK/ 10102128 Kevin White, UChicago 5988c2cb7f8a575f21d1d074b1418865 https://www.encodeproject.org/files/ENCFF971BGP/@@download/ENCFF971BGP.bigWig released s3://encode-public/2016/02/03/f8d2e00a-7e7a-4657-8787-a00fd6604d15/ENCFF971BGP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF001HFR bam bam alignments hg19 ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HGF/ 659545015 John Stamatoyannopoulos, UW 1a13d2d70ea99b015169eaef87b982a4 https://www.encodeproject.org/files/ENCFF001HFR/@@download/ENCFF001HFR.bam archived s3://encode-public/2011/06/25/8ccbcc61-eb37-405d-84d1-df4cbbc4adef/ENCFF001HFR.bam Lab custom hg19 archived low read depth, low read length ENCFF001HFS bigWig bigWig raw signal hg19 ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HFR/ 150958099 John Stamatoyannopoulos, UW 78ff115b65bdb80b4c39876fc2a854d2 https://www.encodeproject.org/files/ENCFF001HFS/@@download/ENCFF001HFS.bigWig archived s3://encode-public/2011/06/25/4bbd9866-6f9a-4b89-bea3-5ea52b9196ce/ENCFF001HFS.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HGF fastq fastq reads ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 714547002 John Stamatoyannopoulos, UW 85e6ba5d5db3e43938b44c965943d25c https://www.encodeproject.org/files/ENCFF001HGF/@@download/ENCFF001HGF.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/06/25/ae8e0129-3bc8-439d-82fb-f10471813f91/ENCFF001HGF.fastq.gz low read depth, low read length ENCFF699AGI bam bam unfiltered alignments GRCh38 ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HGF/ 879020370 ENCODE Processing Pipeline 175823b382f54f00217f66927b4ef1c2 https://www.encodeproject.org/files/ENCFF699AGI/@@download/ENCFF699AGI.bam released s3://encode-public/2016/10/26/b8a9d148-1479-47ad-8325-eb15802609b2/ENCFF699AGI.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF174FWY bam bam alignments GRCh38 ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HGF/ 599833397 ENCODE Processing Pipeline f1fa56fcd3529f8ef04e38835b0740d9 https://www.encodeproject.org/files/ENCFF174FWY/@@download/ENCFF174FWY.bam released s3://encode-public/2016/10/26/17c84009-a4ea-494e-8f8d-a159326d8546/ENCFF174FWY.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF901NQT bam bam unfiltered alignments hg19 ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HGF/ 875215990 ENCODE Processing Pipeline dc5aa6404ce0688dffe0755faade7bb2 https://www.encodeproject.org/files/ENCFF901NQT/@@download/ENCFF901NQT.bam released s3://encode-public/2016/11/13/efc415a7-f84c-4384-a888-05f135e8dea0/ENCFF901NQT.bam ENCODE3 hg19 archived low read depth, low read length ENCFF490BKO bam bam alignments hg19 ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HGF/ 596708255 ENCODE Processing Pipeline 0f10d2104434fdd4336dfa434f791a18 https://www.encodeproject.org/files/ENCFF490BKO/@@download/ENCFF490BKO.bam released s3://encode-public/2016/11/13/bf4bfa26-14db-4ad5-8c9e-378209e75971/ENCFF490BKO.bam ENCODE3 hg19 archived low read depth, low read length ENCFF394KMR bam bam unfiltered alignments GRCh38 ENCSR000DRM Control ChIP-seq /human-donors/ENCDO000ABW/ EFO:0001159 GM12872 cell line Homo 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https://www.encodeproject.org/files/ENCFF130DBS/@@download/ENCFF130DBS.bam released s3://encode-public/2020/09/03/53875a52-9dfb-4f2d-be84-065fbb729552/ENCFF130DBS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF807YUC fastq fastq reads ENCSR925FBM Control ChIP-seq /fly-donors/ENCDO107WCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34560/'], '@type': ['Target', 'Item'], 'name': 'ab-dmelanogaster', 'label': 'ab', '@id': '/targets/ab-dmelanogaster/', 'title': 'ab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddfb68c7-a9b9-4df6-b60b-c7f05ad1b3ab', 'status': 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characterization ENCFF590BXX bigWig bigWig signal of unique reads dm3 ENCSR925FBM Control ChIP-seq /fly-donors/ENCDO107WCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34560/'], '@type': ['Target', 'Item'], 'name': 'ab-dmelanogaster', 'label': 'ab', '@id': '/targets/ab-dmelanogaster/', 'title': 'ab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddfb68c7-a9b9-4df6-b60b-c7f05ad1b3ab', 'status': 'released'} dm3 2L 11183407 11271079 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF883YJO/ 15086703 Kevin White, UChicago 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organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34560/'], '@type': ['Target', 'Item'], 'name': 'ab-dmelanogaster', 'label': 'ab', '@id': '/targets/ab-dmelanogaster/', 'title': 'ab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ddfb68c7-a9b9-4df6-b60b-c7f05ad1b3ab', 'status': 'released'} dm3 2L 11183407 11271079 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF423TPT/ 17154714 Kevin White, UChicago ef5961a7731973995ae613b26f8c244b https://www.encodeproject.org/files/ENCFF761CLQ/@@download/ENCFF761CLQ.bigWig released s3://encode-public/2016/06/20/b97bb79d-6030-4ca9-a069-8edb28ee31db/ENCFF761CLQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000BAF bam bam alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BAO/ 1447690309 Bradley Bernstein, Broad a31d2cb1b20211bef2a834b65c68dfdb https://www.encodeproject.org/files/ENCFF000BAF/@@download/ENCFF000BAF.bam archived s3://encode-public/2010/11/16/8e2a4068-ec9b-4f46-98ff-c57f215c80c3/ENCFF000BAF.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000BAH bigWig bigWig signal hg19 ENCSR000AOB Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 874503447 Bradley Bernstein, Broad 7a4f00d19dd10fde613aed64eac7071e https://www.encodeproject.org/files/ENCFF000BAH/@@download/ENCFF000BAH.bigWig archived s3://encode-public/2010/11/16/c73c589f-bcde-4442-a4be-177c1a5cd6de/ENCFF000BAH.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000BAI bam bam alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000BAU/ 2774533661 Bradley Bernstein, Broad 91c9d8b8d79ff22d5110b8c7c117d29b https://www.encodeproject.org/files/ENCFF000BAI/@@download/ENCFF000BAI.bam archived s3://encode-public/2010/11/16/ef39effb-ec5a-4fed-a2e2-91db47e87e65/ENCFF000BAI.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000BAO fastq fastq reads ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 single-ended 1423363031 Bradley Bernstein, Broad 0bc6b1da2287027ff7474c7f24453e52 SRA:SRR5331491 https://www.encodeproject.org/files/ENCFF000BAO/@@download/ENCFF000BAO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/508ffdee-7530-4d6b-8a9d-ee84a9a66024/ENCFF000BAO.fastq.gz mild to moderate bottlenecking, low read length ENCFF000BAU fastq fastq reads ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 single-ended 2667097417 Bradley Bernstein, Broad ac4fc6f505b4e1130dd63db980e709bd SRA:SRR5331490 https://www.encodeproject.org/files/ENCFF000BAU/@@download/ENCFF000BAU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/9cb56803-e059-464c-aff5-11a2b1f6210c/ENCFF000BAU.fastq.gz mild to moderate bottlenecking, low read length ENCFF954DWW bam bam unfiltered alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAO/ 1895844121 ENCODE Processing Pipeline f5ac07b2bbca356b39e94f79dceac109 https://www.encodeproject.org/files/ENCFF954DWW/@@download/ENCFF954DWW.bam released s3://encode-public/2016/08/09/58a1f0c7-4e2d-4f1f-97ec-77a8bfd83963/ENCFF954DWW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF713YQB bam bam unfiltered alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAU/ 3541064236 ENCODE Processing Pipeline 225079927066b5231597623feb14eea7 https://www.encodeproject.org/files/ENCFF713YQB/@@download/ENCFF713YQB.bam released s3://encode-public/2016/08/09/bef25a41-1e5d-4f86-a815-f17824e29418/ENCFF713YQB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF818YAG bam bam alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAO/ 1104875105 ENCODE Processing Pipeline 9d501d02bf469374ff83b7c65f68d478 https://www.encodeproject.org/files/ENCFF818YAG/@@download/ENCFF818YAG.bam released s3://encode-public/2016/08/09/1e8e08c6-a210-4144-9f58-1e1bb8d4b03c/ENCFF818YAG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF432JPE bam bam alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAU/ 2142554391 ENCODE Processing Pipeline 4e3b819a5b4177e735fb295e95ad78ea https://www.encodeproject.org/files/ENCFF432JPE/@@download/ENCFF432JPE.bam released s3://encode-public/2016/08/09/92723ba1-7d52-4913-ad52-fa72aa5ccf2b/ENCFF432JPE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF250XLH bam bam unfiltered alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAU/ 3520487361 ENCODE Processing Pipeline 5afa08bd4f9bd1877a86c5d4efd0f2c2 https://www.encodeproject.org/files/ENCFF250XLH/@@download/ENCFF250XLH.bam released s3://encode-public/2016/11/01/1d687b56-3490-42d1-93fd-26e5fff08dc7/ENCFF250XLH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF930VIN bam bam unfiltered alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAO/ 1884977459 ENCODE Processing Pipeline 404f6f6dc6d417ddea90c0b86875406d https://www.encodeproject.org/files/ENCFF930VIN/@@download/ENCFF930VIN.bam released s3://encode-public/2016/11/01/e2829430-5620-4489-b479-5e854ea84bde/ENCFF930VIN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF451SVK bam bam alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAO/ 1105151211 ENCODE Processing Pipeline df89c0aaf328e95db23632cc889e683a https://www.encodeproject.org/files/ENCFF451SVK/@@download/ENCFF451SVK.bam released s3://encode-public/2016/11/01/1459a0e2-8d05-4f86-a83c-86661319b69f/ENCFF451SVK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF385UZW bam bam alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAU/ 2143005762 ENCODE Processing Pipeline 94cc727dc5df403efaae7bae9a379d2a https://www.encodeproject.org/files/ENCFF385UZW/@@download/ENCFF385UZW.bam released s3://encode-public/2016/11/01/ee5f4287-cf22-401b-b3e2-d313f307dce9/ENCFF385UZW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF820FDY tagAlign tagAlign alignments hg19 ENCSR000AOB Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 203884991 Anshul Kundaje, Stanford 4838d6eb02b024577b96c486fd37b071 https://www.encodeproject.org/files/ENCFF820FDY/@@download/ENCFF820FDY.tagAlign.gz archived s3://encode-public/2016/07/19/e6b61de3-73f3-484c-8ef1-9de48e4704ec/ENCFF820FDY.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF979NGA bam bam alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAO/ 1104875108 ENCODE Processing Pipeline 19c5c4e6dd22841a82ca98c353e0031b https://www.encodeproject.org/files/ENCFF979NGA/@@download/ENCFF979NGA.bam released s3://encode-public/2020/02/17/30dc5cc4-8cba-4dd7-af4e-2f87edf7559e/ENCFF979NGA.bam mild to moderate bottlenecking, low read length ENCFF711YKQ bam bam unfiltered alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAU/ 3541064239 ENCODE Processing Pipeline 066b712a0e9692cbcdc422c7cf2c461e https://www.encodeproject.org/files/ENCFF711YKQ/@@download/ENCFF711YKQ.bam released s3://encode-public/2020/02/17/a88e9118-caf7-499f-8ae5-aae78988af7c/ENCFF711YKQ.bam mild to moderate bottlenecking, low read length ENCFF848EWJ bam bam unfiltered alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAO/ 1895844125 ENCODE Processing Pipeline 2e9932c2906b8c87ada478c4d14e9b99 https://www.encodeproject.org/files/ENCFF848EWJ/@@download/ENCFF848EWJ.bam released s3://encode-public/2020/02/17/f02b259e-4241-4112-b52e-997257ebf627/ENCFF848EWJ.bam mild to moderate bottlenecking, low read length ENCFF376JIO bam bam alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BAU/ 2142554394 ENCODE Processing Pipeline 86a6d33dcd04c83fad0ed745e260a454 https://www.encodeproject.org/files/ENCFF376JIO/@@download/ENCFF376JIO.bam released s3://encode-public/2020/02/17/0e8b229b-b3ab-42b1-b790-1842f8ff8bf7/ENCFF376JIO.bam mild to moderate bottlenecking, low read length ENCFF364CPX bam bam unfiltered alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAO/ 1884977463 ENCODE Processing Pipeline 79651f67b1c4d564395c18be9cdff62f https://www.encodeproject.org/files/ENCFF364CPX/@@download/ENCFF364CPX.bam released s3://encode-public/2020/02/18/1f46c784-ad61-4ba3-b3a5-498c420058fa/ENCFF364CPX.bam mild to moderate bottlenecking, low read length ENCFF060BHV bam bam alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAU/ 2143005767 ENCODE Processing Pipeline 2f7865e95964b3f31e1978a3a5951099 https://www.encodeproject.org/files/ENCFF060BHV/@@download/ENCFF060BHV.bam released s3://encode-public/2020/02/18/1da43293-e42f-43ae-b9bc-c4a90ccb6d0c/ENCFF060BHV.bam mild to moderate bottlenecking, low read length ENCFF597CEJ bam bam alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAO/ 1105151216 ENCODE Processing Pipeline 5aa38672cf09354ab70b9340d7b8cd18 https://www.encodeproject.org/files/ENCFF597CEJ/@@download/ENCFF597CEJ.bam released s3://encode-public/2020/02/18/c2b27c54-751f-4ec1-9475-8a8c0efbaef3/ENCFF597CEJ.bam mild to moderate bottlenecking, low read length ENCFF775EHF bam bam unfiltered alignments hg19 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BAU/ 3520487365 ENCODE Processing Pipeline 9e7188cdcc98ba0d775e32df900ee2ca https://www.encodeproject.org/files/ENCFF775EHF/@@download/ENCFF775EHF.bam released s3://encode-public/2020/02/18/12883b6f-4fec-4fcd-b0ac-25f01d7593ed/ENCFF775EHF.bam mild to moderate bottlenecking, low read length ENCFF753ALZ bam bam unfiltered alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000BAU/, /files/ENCFF110MCL/ 3462262006 ENCODE Processing Pipeline 79901d902522586e83cff1133538e81e https://www.encodeproject.org/files/ENCFF753ALZ/@@download/ENCFF753ALZ.bam released s3://encode-public/2020/09/03/eca65308-b6e3-434f-a5ad-567b25ae2a78/ENCFF753ALZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF674XYW bam bam unfiltered alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BAO/, /files/ENCFF110MCL/ 1846594285 ENCODE Processing Pipeline 4e9fca9ef27a537e6f56ed0191f019c9 https://www.encodeproject.org/files/ENCFF674XYW/@@download/ENCFF674XYW.bam released s3://encode-public/2020/09/03/a951a522-9d68-4057-9185-dab788d05919/ENCFF674XYW.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF017QCL bam bam alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000BAU/, /files/ENCFF110MCL/ 2312118335 ENCODE Processing Pipeline 84543324578d28839bd1276b6d4fc1e8 https://www.encodeproject.org/files/ENCFF017QCL/@@download/ENCFF017QCL.bam released s3://encode-public/2020/09/03/b68f96cd-7b46-4c82-bb56-82c8dbc0cb5b/ENCFF017QCL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF842IEZ bam bam alignments GRCh38 ENCSR000AOB Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BAO/, /files/ENCFF110MCL/ 1198966536 ENCODE Processing Pipeline 80412bba9c855add48397e947c44dcaf https://www.encodeproject.org/files/ENCFF842IEZ/@@download/ENCFF842IEZ.bam released s3://encode-public/2020/09/03/e3c1a172-d527-4beb-b9e0-b73c4ce6d4a7/ENCFF842IEZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF000YAQ bam bam alignments hg19 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000YBC/ 1024753755 Peggy Farnham, USC 9ce5c1d7de410a47003905c2fa623764 https://www.encodeproject.org/files/ENCFF000YAQ/@@download/ENCFF000YAQ.bam archived s3://encode-public/2010/12/06/15427213-901d-4fa0-9316-b5d638340ae3/ENCFF000YAQ.bam Lab custom hg19 archived low read length ENCFF000YAS bigWig bigWig signal hg19 ENCSR000EVV Control ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 368026246 Peggy Farnham, USC 8bfff18f2bea00625a809da457c3173e https://www.encodeproject.org/files/ENCFF000YAS/@@download/ENCFF000YAS.bigWig archived s3://encode-public/2010/12/06/dc3d6455-3134-4185-b1d6-a4f0f0d5b579/ENCFF000YAS.bigWig Lab custom hg19 archived low read length ENCFF000YBC fastq fastq reads ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 1832287819 Peggy Farnham, USC 4714464422288debee72f09e3e9eca56 https://www.encodeproject.org/files/ENCFF000YBC/@@download/ENCFF000YBC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/71e58f97-53a7-4b32-852d-746886e424cf/ENCFF000YBC.fastq.gz low read length ENCFF852SEL bam bam unfiltered alignments hg19 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000YBC/ 2291475408 ENCODE Processing Pipeline 8ac305d64fb707f790aeb66f7c960465 https://www.encodeproject.org/files/ENCFF852SEL/@@download/ENCFF852SEL.bam released s3://encode-public/2017/02/28/a2a01ce5-4c39-46a0-9ec2-b84bea7d59b6/ENCFF852SEL.bam ENCODE3 hg19 archived low read length ENCFF379GUA bam bam alignments hg19 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000YBC/ 1548229462 ENCODE Processing Pipeline 1cbffc47b6758b27de8721b40bd31260 https://www.encodeproject.org/files/ENCFF379GUA/@@download/ENCFF379GUA.bam released s3://encode-public/2017/02/28/9feaafce-4bfe-4944-91a7-2b4133aab174/ENCFF379GUA.bam ENCODE3 hg19 archived low read length ENCFF660XDK bam bam unfiltered alignments GRCh38 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000YBC/ 2305022496 ENCODE Processing Pipeline f79586288fd4e1aee9e7644b064f8be1 https://www.encodeproject.org/files/ENCFF660XDK/@@download/ENCFF660XDK.bam released s3://encode-public/2017/02/28/4a03b99a-c1e0-4ec3-bd27-6863216106d8/ENCFF660XDK.bam ENCODE3 GRCh38 archived low read length ENCFF108PMF bam bam alignments GRCh38 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000YBC/ 1547918694 ENCODE Processing Pipeline 0fd5adf3fe1925757ee76028c5ec2fe4 https://www.encodeproject.org/files/ENCFF108PMF/@@download/ENCFF108PMF.bam released s3://encode-public/2017/02/28/020876d9-55f7-455c-ad21-3ef68bc49b59/ENCFF108PMF.bam ENCODE3 GRCh38 archived low read length ENCFF985VAI bam bam unfiltered alignments GRCh38 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000YBC/, /files/ENCFF110MCL/ 1396540967 ENCODE Processing Pipeline bbf093ad599164adce6e5bb75cc91947 https://www.encodeproject.org/files/ENCFF985VAI/@@download/ENCFF985VAI.bam released s3://encode-public/2020/10/27/03b59893-07b0-4fbe-b93f-808db73912c8/ENCFF985VAI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF515ADZ bam bam alignments GRCh38 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000YBC/, /files/ENCFF110MCL/ 1085269789 ENCODE Processing Pipeline c6f9687b99e96b6d44e5a2e56696c32a https://www.encodeproject.org/files/ENCFF515ADZ/@@download/ENCFF515ADZ.bam released s3://encode-public/2020/10/27/a40e29ed-456d-4339-b579-e560d6f64500/ENCFF515ADZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF017KPP bam bam unfiltered alignments GRCh38 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000YBC/, /files/ENCFF110MCL/ 2135475589 ENCODE Processing Pipeline c2e87c4605e4dd84206da682f0ed3872 https://www.encodeproject.org/files/ENCFF017KPP/@@download/ENCFF017KPP.bam released s3://encode-public/2021/02/04/ea3bf744-03b1-48a7-9c8b-7c44da4e3cc0/ENCFF017KPP.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF643TKC bam bam alignments GRCh38 ENCSR000EVV Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000YBC/, /files/ENCFF110MCL/ 1533265782 ENCODE Processing Pipeline d62ef0ee1bde0d0ae92a9c6e46919307 https://www.encodeproject.org/files/ENCFF643TKC/@@download/ENCFF643TKC.bam released s3://encode-public/2021/02/04/2d14fa39-7f27-473b-9894-3c3e19f471a3/ENCFF643TKC.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF966BZG fastq fastq reads ENCSR545PPX Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2021-09-09 ENCODE 1 1_1 75 single-ended 1085807449 Yijun Ruan, JAX ff7e745bbfa3b9fd6df080ebf570e1e2 https://www.encodeproject.org/files/ENCFF966BZG/@@download/ENCFF966BZG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/31/0abcabef-19a0-477a-a452-aedb60e5c6bc/ENCFF966BZG.fastq.gz ENCFF668YUR bam bam alignments GRCh38 ENCSR545PPX Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2021-09-09 ENCODE 1 1_1 75 /files/ENCFF906FLV/, /files/ENCFF966BZG/ 1041055897 Yijun Ruan, JAX be2b72216450be731c779bb9eac55182 https://www.encodeproject.org/files/ENCFF668YUR/@@download/ENCFF668YUR.bam released s3://encode-public/2021/08/31/79a307f1-2242-4246-8155-923fc85a7e4b/ENCFF668YUR.bam Lab custom GRCh38 released ENCFF002AQW fastq fastq reads ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1123295368 Bing Ren, UCSD 9a59ef2908c22504652b0df9b9d9e828 SRA:SRR3652553 https://www.encodeproject.org/files/ENCFF002AQW/@@download/ENCFF002AQW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/03/15/dea82a9f-fea5-49c2-b120-5a2fbc8f5c13/ENCFF002AQW.fastq.gz low read depth ENCFF002ARB fastq fastq reads ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1710740227 Bing Ren, UCSD 1e691cef757318f54812100e416c9df9 SRA:SRR3652554 https://www.encodeproject.org/files/ENCFF002ARB/@@download/ENCFF002ARB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/03/15/781281e1-b310-4d05-993b-2215a3d45af4/ENCFF002ARB.fastq.gz low read depth ENCFF016UCW bam bam unfiltered alignments mm10-minimal ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARB/, /files/ENCFF806TVZ/ 1936206560 ENCODE Processing Pipeline 7d3bfaf1bb8621fd79610c9f0de4c85e https://www.encodeproject.org/files/ENCFF016UCW/@@download/ENCFF016UCW.bam archived s3://encode-public/2015/02/09/12947c6d-5c13-49e1-b6c7-c1f6ca14ef98/ENCFF016UCW.bam low read depth ENCFF854TIP bam bam unfiltered alignments mm10-minimal ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQW/ 1287212696 ENCODE Processing Pipeline 15183343f323b5fb70ebe700999d3fb7 https://www.encodeproject.org/files/ENCFF854TIP/@@download/ENCFF854TIP.bam archived s3://encode-public/2015/02/09/61a083ad-62ce-4a15-ae9a-eb9d5dd9dc80/ENCFF854TIP.bam low read depth ENCFF261VSL bam bam alignments mm10-minimal ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARB/, /files/ENCFF806TVZ/ 1303880757 ENCODE Processing Pipeline 69741ef0c63caff005ac46fa5af1e408 https://www.encodeproject.org/files/ENCFF261VSL/@@download/ENCFF261VSL.bam archived s3://encode-public/2015/05/23/aa0658db-44a1-48d3-bdb8-03805bc7c85b/ENCFF261VSL.bam low read depth ENCFF819FNM bam bam alignments mm10-minimal ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQW/ 873138727 ENCODE Processing Pipeline 9ae87e51bf727ec33de597dd801bb287 https://www.encodeproject.org/files/ENCFF819FNM/@@download/ENCFF819FNM.bam archived s3://encode-public/2015/05/23/eab83652-14f0-465f-aa64-e2332d721bba/ENCFF819FNM.bam low read depth ENCFF521VQA bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQW/ 1289046367 ENCODE Processing Pipeline da51af8025df41a0523c841d89a287ba https://www.encodeproject.org/files/ENCFF521VQA/@@download/ENCFF521VQA.bam released s3://encode-public/2016/05/20/aa53b0e2-7358-4321-bfc8-da0e6bcdfe19/ENCFF521VQA.bam ENCODE3 mm10 archived low read depth ENCFF521XJY bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARB/, /files/ENCFF018NEO/ 1938702795 ENCODE Processing Pipeline 0f0f9ef786fab235d3cb3a4fb25a01e5 https://www.encodeproject.org/files/ENCFF521XJY/@@download/ENCFF521XJY.bam released s3://encode-public/2016/05/20/f7bcac31-3922-4e1e-aba4-9351ec982ab5/ENCFF521XJY.bam ENCODE3 mm10 archived low read depth ENCFF472HVK bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQW/ 872889247 ENCODE Processing Pipeline 325caa5b99e9a377be3f3d64829f632d https://www.encodeproject.org/files/ENCFF472HVK/@@download/ENCFF472HVK.bam released s3://encode-public/2016/05/20/555593e9-d9a3-4734-bcdc-ee6b754e8d4e/ENCFF472HVK.bam ENCODE3 mm10 archived low read depth ENCFF815EAE bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARB/, /files/ENCFF018NEO/ 1303544272 ENCODE Processing Pipeline 985969f84ad955f0a082edbc8bda732a https://www.encodeproject.org/files/ENCFF815EAE/@@download/ENCFF815EAE.bam released s3://encode-public/2016/05/20/e5e118ec-23d8-40c8-8c2c-42f61b93dbbc/ENCFF815EAE.bam ENCODE3 mm10 archived low read depth ENCFF968GIU bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002ARB/, /files/ENCFF018NEO/ 1581289600 ENCODE Processing Pipeline fed1cd746b6ee7817571172031aad937 https://www.encodeproject.org/files/ENCFF968GIU/@@download/ENCFF968GIU.bam released s3://encode-public/2016/10/03/25dcc066-90b9-4b5b-93b3-43e9a6aaa584/ENCFF968GIU.bam ENCODE3 mm10 archived low read depth ENCFF054KQU bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQW/ 1049531815 ENCODE Processing Pipeline 244da36adae64df30b6aec23742d91d0 https://www.encodeproject.org/files/ENCFF054KQU/@@download/ENCFF054KQU.bam released s3://encode-public/2016/10/03/27486e75-d3c1-4948-9a77-12a03a1387b2/ENCFF054KQU.bam ENCODE3 mm10 archived low read depth ENCFF451QHB bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQW/ 667705403 ENCODE Processing Pipeline c9419d07b6fb0d294e6ca585ec4fa0e8 https://www.encodeproject.org/files/ENCFF451QHB/@@download/ENCFF451QHB.bam released s3://encode-public/2016/10/03/50b71e94-563e-4027-bf63-614d9b6adae2/ENCFF451QHB.bam ENCODE3 mm10 archived low read depth ENCFF438SAE bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002ARB/, /files/ENCFF018NEO/ 999560738 ENCODE Processing Pipeline 545dd54e0e72fd4fbaab5ef0ee4562a3 https://www.encodeproject.org/files/ENCFF438SAE/@@download/ENCFF438SAE.bam released s3://encode-public/2016/10/03/a46f13f1-9686-49c0-9b93-cd48ec6daccb/ENCFF438SAE.bam ENCODE3 mm10 archived low read depth ENCFF035JZE bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQW/, /files/ENCFF309GLL/ 1268964864 ENCODE Processing Pipeline 531b0087282d58aadd7afa44036e8fd0 https://www.encodeproject.org/files/ENCFF035JZE/@@download/ENCFF035JZE.bam released s3://encode-public/2020/10/08/a1676c68-bdd8-467c-921e-851862b834c5/ENCFF035JZE.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF788BNS bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQW/, /files/ENCFF309GLL/ 911772543 ENCODE Processing Pipeline 8f33b5050de2c86b3e60f79f9239f060 https://www.encodeproject.org/files/ENCFF788BNS/@@download/ENCFF788BNS.bam released s3://encode-public/2020/10/08/8582fd71-e91e-4c2b-8124-1efc8e34f4f0/ENCFF788BNS.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF379MGT bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQW/, /files/ENCFF309GLL/ 719151053 ENCODE Processing Pipeline 6f52fe2cf56851e7c2b61af10b78dde4 https://www.encodeproject.org/files/ENCFF379MGT/@@download/ENCFF379MGT.bam released s3://encode-public/2020/10/10/4365080d-0c07-47f5-bd3b-6593bbebefce/ENCFF379MGT.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF940ABG bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARB/, /files/ENCFF309GLL/ 1361022185 ENCODE Processing Pipeline 7c277dc309374b37b90cca3120c7dafb https://www.encodeproject.org/files/ENCFF940ABG/@@download/ENCFF940ABG.bam released s3://encode-public/2020/10/08/8286afae-c277-42fa-8ebb-746737d8ed70/ENCFF940ABG.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF982TQZ bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARB/, /files/ENCFF309GLL/ 1909632786 ENCODE Processing Pipeline 416de79dfa0c866b377bbc8df93ce405 https://www.encodeproject.org/files/ENCFF982TQZ/@@download/ENCFF982TQZ.bam released s3://encode-public/2020/10/08/c9a6e1f4-ae38-4a50-a709-982ee3bc774d/ENCFF982TQZ.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF685BAU bam bam alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002ARB/, /files/ENCFF309GLL/ 1076394651 ENCODE Processing Pipeline 45d677ca79d5d7646ec60eb7fe6c1192 https://www.encodeproject.org/files/ENCFF685BAU/@@download/ENCFF685BAU.bam released s3://encode-public/2020/10/10/ee561e01-16e9-409e-b78a-5aae50ee024f/ENCFF685BAU.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF906YUF bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002ARB/, /files/ENCFF309GLL/ 1544603085 ENCODE Processing Pipeline 80bb1acec019f5eae387b2f13a66bd38 https://www.encodeproject.org/files/ENCFF906YUF/@@download/ENCFF906YUF.bam released s3://encode-public/2020/10/10/e01c04c4-d29e-472f-88ef-4153cf4a82a9/ENCFF906YUF.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF634KDB bam bam unfiltered alignments mm10 ENCSR617RDY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQW/, /files/ENCFF309GLL/ 1024763262 ENCODE Processing Pipeline d5a5e2cb4add13ab62f875414adcbde4 https://www.encodeproject.org/files/ENCFF634KDB/@@download/ENCFF634KDB.bam released s3://encode-public/2020/10/10/ef604454-28ab-49b0-87e9-bbade96aebc4/ENCFF634KDB.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF518WKV fastq fastq reads ENCSR838HNJ Control ChIP-seq /fly-donors/ENCDO145TAX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38438/'], '@type': ['Target', 'Item'], 'name': 'CG32264-dmelanogaster', 'label': 'CG32264', '@id': '/targets/CG32264-dmelanogaster/', 'title': 'CG32264 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '91fcc509-6aa6-4865-b337-cc7c0d517e96', 'status': 'released'} dm3 3L 3707719 3806680 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 537208108 Kevin White, UChicago 47d53e363414f3b47ccf5b7c96722116 https://www.encodeproject.org/files/ENCFF518WKV/@@download/ENCFF518WKV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/569c5a35-4d39-4c08-a6a6-59557451c3ce/ENCFF518WKV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF404BXO bam bam alignments dm3 ENCSR838HNJ Control ChIP-seq /fly-donors/ENCDO145TAX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38438/'], '@type': ['Target', 'Item'], 'name': 'CG32264-dmelanogaster', 'label': 'CG32264', '@id': '/targets/CG32264-dmelanogaster/', 'title': 'CG32264 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '91fcc509-6aa6-4865-b337-cc7c0d517e96', 'status': 'released'} dm3 3L 3707719 3806680 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF518WKV/ 782879810 Kevin White, UChicago 930b7076db674ef6fc76045422b2cc77 https://www.encodeproject.org/files/ENCFF404BXO/@@download/ENCFF404BXO.bam released s3://encode-public/2015/08/03/139eb638-9a4c-4fc1-a9e1-0f6a8c196b0a/ENCFF404BXO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF110ZRN bigWig bigWig signal of unique reads dm3 ENCSR838HNJ Control ChIP-seq /fly-donors/ENCDO145TAX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38438/'], '@type': ['Target', 'Item'], 'name': 'CG32264-dmelanogaster', 'label': 'CG32264', '@id': '/targets/CG32264-dmelanogaster/', 'title': 'CG32264 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '91fcc509-6aa6-4865-b337-cc7c0d517e96', 'status': 'released'} dm3 3L 3707719 3806680 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF404BXO/ 15153865 Kevin White, UChicago c42812f02c95ee8f5e1c0f22efb257d8 https://www.encodeproject.org/files/ENCFF110ZRN/@@download/ENCFF110ZRN.bigWig released s3://encode-public/2015/10/05/25050a16-2b84-4388-94df-c7d37dd2e110/ENCFF110ZRN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF346LYH bigWig bigWig read-depth normalized signal dm3 ENCSR838HNJ Control ChIP-seq /fly-donors/ENCDO145TAX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38438/'], '@type': ['Target', 'Item'], 'name': 'CG32264-dmelanogaster', 'label': 'CG32264', '@id': '/targets/CG32264-dmelanogaster/', 'title': 'CG32264 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '91fcc509-6aa6-4865-b337-cc7c0d517e96', 'status': 'released'} dm3 3L 3707719 3806680 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF404BXO/ 15153697 Kevin White, UChicago f937bde218e72d1d58acc9ad5ce91532 https://www.encodeproject.org/files/ENCFF346LYH/@@download/ENCFF346LYH.bigWig released s3://encode-public/2015/10/05/774c7ef1-6e49-46de-8d21-aa1304fb65ee/ENCFF346LYH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF319TDL bam bam alignments dm6 ENCSR838HNJ Control ChIP-seq /fly-donors/ENCDO145TAX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38438/'], '@type': ['Target', 'Item'], 'name': 'CG32264-dmelanogaster', 'label': 'CG32264', '@id': '/targets/CG32264-dmelanogaster/', 'title': 'CG32264 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '91fcc509-6aa6-4865-b337-cc7c0d517e96', 'status': 'released'} dm3 3L 3707719 3806680 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF518WKV/ 778501122 Kevin White, UChicago 350a9d08f2c4c78dde567aee1688f454 https://www.encodeproject.org/files/ENCFF319TDL/@@download/ENCFF319TDL.bam released s3://encode-public/2016/04/21/55c11f42-559f-4d93-ae45-c11f2b149902/ENCFF319TDL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF233UIO bigWig bigWig read-depth normalized signal dm6 ENCSR838HNJ Control ChIP-seq /fly-donors/ENCDO145TAX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38438/'], '@type': ['Target', 'Item'], 'name': 'CG32264-dmelanogaster', 'label': 'CG32264', '@id': '/targets/CG32264-dmelanogaster/', 'title': 'CG32264 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '91fcc509-6aa6-4865-b337-cc7c0d517e96', 'status': 'released'} dm3 3L 3707719 3806680 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF319TDL/ 17257143 Kevin White, UChicago 4d7bd1fddb5980539495c1af92d151f4 https://www.encodeproject.org/files/ENCFF233UIO/@@download/ENCFF233UIO.bigWig released s3://encode-public/2016/06/20/264beab9-3844-43aa-8ed8-e15849d34f01/ENCFF233UIO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF613VAQ bigWig bigWig signal of unique reads dm6 ENCSR838HNJ Control ChIP-seq /fly-donors/ENCDO145TAX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38438/'], '@type': ['Target', 'Item'], 'name': 'CG32264-dmelanogaster', 'label': 'CG32264', '@id': '/targets/CG32264-dmelanogaster/', 'title': 'CG32264 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '91fcc509-6aa6-4865-b337-cc7c0d517e96', 'status': 'released'} dm3 3L 3707719 3806680 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF319TDL/ 17252307 Kevin White, UChicago 459229684f9dc13e43d55aa55f869fc6 https://www.encodeproject.org/files/ENCFF613VAQ/@@download/ENCFF613VAQ.bigWig released s3://encode-public/2016/06/20/436da5c5-f173-4e58-a0c3-63df8599c7eb/ENCFF613VAQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002APU fastq fastq reads ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1301223463 Bing Ren, UCSD 7c274db11b78ebcbb183f3e19220a919 SRA:SRR3653111 https://www.encodeproject.org/files/ENCFF002APU/@@download/ENCFF002APU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/9fb419a5-9179-4ea6-a823-03dfe372899c/ENCFF002APU.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths ENCFF002APV fastq fastq reads ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1573944785 Bing Ren, UCSD c7de1f119f2ab28003a4fc23e851f077 SRA:SRR3653110 https://www.encodeproject.org/files/ENCFF002APV/@@download/ENCFF002APV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/907b53ab-f587-41f9-8b89-2377f68bac6e/ENCFF002APV.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths ENCFF074NEY bam bam unfiltered alignments mm10-minimal ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002APV/ 1758010671 ENCODE Processing Pipeline a9fe9e85e5dfd041521f90f344957ac0 https://www.encodeproject.org/files/ENCFF074NEY/@@download/ENCFF074NEY.bam archived s3://encode-public/2015/02/09/b87e3b26-9745-435c-a943-5979721fe04b/ENCFF074NEY.bam mild to moderate bottlenecking, low read length, mixed read lengths ENCFF423BIC bam bam unfiltered alignments mm10-minimal ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002APU/ 1402747969 ENCODE Processing Pipeline b0c48b06d77e1fc434054ca5a77a92a1 https://www.encodeproject.org/files/ENCFF423BIC/@@download/ENCFF423BIC.bam archived s3://encode-public/2015/02/09/ec319fdb-bd02-49e1-bcb6-ee539f161fe8/ENCFF423BIC.bam mild to moderate bottlenecking, low read length, mixed read lengths ENCFF025NCO bam bam alignments mm10-minimal ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002APV/ 1260837958 ENCODE Processing Pipeline a149f300c264b0c693a0a3aa84bb9238 https://www.encodeproject.org/files/ENCFF025NCO/@@download/ENCFF025NCO.bam archived s3://encode-public/2015/05/24/266b16a1-0b74-4dc9-9328-c125ff788870/ENCFF025NCO.bam mild to moderate bottlenecking, low read length, mixed read lengths ENCFF228INH bam bam alignments mm10-minimal ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002APU/ 866206502 ENCODE Processing Pipeline 9d8551af1b1e57229a8cbbcf59571f34 https://www.encodeproject.org/files/ENCFF228INH/@@download/ENCFF228INH.bam archived s3://encode-public/2015/05/24/6404a24f-4d15-4f7e-98ac-eb53ba3b2a83/ENCFF228INH.bam mild to moderate bottlenecking, low read length, mixed read lengths ENCFF542YWS bam bam unfiltered alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002APU/ 1404868331 ENCODE Processing Pipeline 52174f46563442330f582decd20f17b9 https://www.encodeproject.org/files/ENCFF542YWS/@@download/ENCFF542YWS.bam released s3://encode-public/2016/05/20/a366de3b-394b-4c22-808a-9a6fe414e4e1/ENCFF542YWS.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths ENCFF396CVK bam bam alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002APU/ 865960078 ENCODE Processing Pipeline 96544b667470d3eabb3a374557fd328d https://www.encodeproject.org/files/ENCFF396CVK/@@download/ENCFF396CVK.bam released s3://encode-public/2016/05/20/66821a9b-f168-47d0-81a4-96ccbe50f143/ENCFF396CVK.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths ENCFF295HNV bam bam unfiltered alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002APV/ 1445332077 ENCODE Processing Pipeline 2e63ce81ae87fb27d04b9842bafe6a34 https://www.encodeproject.org/files/ENCFF295HNV/@@download/ENCFF295HNV.bam released s3://encode-public/2016/11/22/7f36eefa-1b16-49ef-a999-4b4d2c29c1e8/ENCFF295HNV.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths ENCFF506NSJ bam bam alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002APV/ 967743920 ENCODE Processing Pipeline 431ef5ec8b61217a974a4862a064f1c7 https://www.encodeproject.org/files/ENCFF506NSJ/@@download/ENCFF506NSJ.bam released s3://encode-public/2016/11/22/6a3b2a79-a7c3-4a54-ba3e-decc619915a6/ENCFF506NSJ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths ENCFF225BYO bam bam unfiltered alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002APV/ 1409111019 ENCODE Processing Pipeline b7bcbb4c4a85fa8ed9484a31944f9133 https://www.encodeproject.org/files/ENCFF225BYO/@@download/ENCFF225BYO.bam released s3://encode-public/2020/10/07/45699b6d-c71e-4657-97ad-d1da7c8c3440/ENCFF225BYO.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths ENCFF790EML bam bam unfiltered alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002APU/ 1365824809 ENCODE Processing Pipeline 052d997270092fdb231c852ea76d4160 https://www.encodeproject.org/files/ENCFF790EML/@@download/ENCFF790EML.bam released s3://encode-public/2020/10/07/73b15fce-d8ba-4c28-ba75-473a0ae73d27/ENCFF790EML.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths ENCFF434ZDX bam bam alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002APV/ 1041442544 ENCODE Processing Pipeline ab057d1d6fed2cd16c7396c40e128b60 https://www.encodeproject.org/files/ENCFF434ZDX/@@download/ENCFF434ZDX.bam released s3://encode-public/2020/10/07/7d468b37-96d8-4a62-bc90-fe183e3be197/ENCFF434ZDX.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths ENCFF604IIE bam bam alignments mm10 ENCSR840PFW Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002APU/ 930247640 ENCODE Processing Pipeline f37c8cb3c95f3cfe71b89e8c19303dc7 https://www.encodeproject.org/files/ENCFF604IIE/@@download/ENCFF604IIE.bam released s3://encode-public/2020/10/07/9fbcca35-c0f4-4e18-887a-3d87080a2cd8/ENCFF604IIE.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read length, mixed read lengths ENCFF426PZG fastq fastq reads ENCSR194OUP Control ChIP-seq /worm-donors/ENCDO637SPW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180459/'], '@type': ['Target', 'Item'], 'name': 'lim-6-celegans', 'label': 'lim-6', '@id': '/targets/lim-6-celegans/', 'title': 'lim-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b801950-f08f-4126-af0a-699701732d97', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 499951848 Kevin White, UChicago eb9b9ddbdbc9309eb5ca3dc79a961dcc https://www.encodeproject.org/files/ENCFF426PZG/@@download/ENCFF426PZG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/f6e2dc5a-def3-495f-bff5-661b6678ff75/ENCFF426PZG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF864MGR bam bam alignments ce10 ENCSR194OUP Control ChIP-seq /worm-donors/ENCDO637SPW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180459/'], '@type': ['Target', 'Item'], 'name': 'lim-6-celegans', 'label': 'lim-6', '@id': '/targets/lim-6-celegans/', 'title': 'lim-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b801950-f08f-4126-af0a-699701732d97', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF426PZG/ 716601321 Kevin White, UChicago a9c8d97499a2165c10d6196e371cf450 https://www.encodeproject.org/files/ENCFF864MGR/@@download/ENCFF864MGR.bam released s3://encode-public/2015/08/19/0fc303a2-bd4b-4745-b253-a6aa26b3183e/ENCFF864MGR.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF340TRX bigWig bigWig read-depth normalized signal ce10 ENCSR194OUP Control ChIP-seq /worm-donors/ENCDO637SPW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180459/'], '@type': ['Target', 'Item'], 'name': 'lim-6-celegans', 'label': 'lim-6', '@id': '/targets/lim-6-celegans/', 'title': 'lim-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b801950-f08f-4126-af0a-699701732d97', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF864MGR/ 9962875 Kevin White, UChicago e7119dcb4ee381dde214d398c2076e3d https://www.encodeproject.org/files/ENCFF340TRX/@@download/ENCFF340TRX.bigWig released s3://encode-public/2015/10/02/0d276fda-e3f1-4a9b-b6a8-65126240c2b8/ENCFF340TRX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF544VSN bigWig bigWig signal of unique reads ce10 ENCSR194OUP Control ChIP-seq /worm-donors/ENCDO637SPW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180459/'], '@type': ['Target', 'Item'], 'name': 'lim-6-celegans', 'label': 'lim-6', '@id': '/targets/lim-6-celegans/', 'title': 'lim-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b801950-f08f-4126-af0a-699701732d97', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF864MGR/ 9951948 Kevin White, UChicago abbfc15c4c4626ea73ec5b353b530ceb https://www.encodeproject.org/files/ENCFF544VSN/@@download/ENCFF544VSN.bigWig released s3://encode-public/2015/10/02/a1e1e72b-ff71-4ac4-a20f-5b0d2ceb868e/ENCFF544VSN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF406QPJ bam bam alignments ce11 ENCSR194OUP Control ChIP-seq /worm-donors/ENCDO637SPW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180459/'], '@type': ['Target', 'Item'], 'name': 'lim-6-celegans', 'label': 'lim-6', '@id': '/targets/lim-6-celegans/', 'title': 'lim-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b801950-f08f-4126-af0a-699701732d97', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF426PZG/ 717202175 Kevin White, UChicago 4d58fc8072df6af85f1c2ccdc7b332e9 https://www.encodeproject.org/files/ENCFF406QPJ/@@download/ENCFF406QPJ.bam released s3://encode-public/2016/01/16/3a22047b-155b-4fdc-a8f4-881868cc5a13/ENCFF406QPJ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF753HWG bigWig bigWig signal of unique reads ce11 ENCSR194OUP Control ChIP-seq /worm-donors/ENCDO637SPW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180459/'], '@type': ['Target', 'Item'], 'name': 'lim-6-celegans', 'label': 'lim-6', '@id': '/targets/lim-6-celegans/', 'title': 'lim-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b801950-f08f-4126-af0a-699701732d97', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF406QPJ/ 9949008 Kevin White, UChicago 5cf8009051d9028503e523cf479edcd8 https://www.encodeproject.org/files/ENCFF753HWG/@@download/ENCFF753HWG.bigWig released s3://encode-public/2016/02/03/d467099b-1a4e-40af-b154-29ccc62b6a44/ENCFF753HWG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF317CPO bigWig bigWig read-depth normalized signal ce11 ENCSR194OUP Control ChIP-seq /worm-donors/ENCDO637SPW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180459/'], '@type': ['Target', 'Item'], 'name': 'lim-6-celegans', 'label': 'lim-6', '@id': '/targets/lim-6-celegans/', 'title': 'lim-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b801950-f08f-4126-af0a-699701732d97', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF406QPJ/ 9960424 Kevin White, UChicago a26b2dd409320dbf824e3262d5a3e614 https://www.encodeproject.org/files/ENCFF317CPO/@@download/ENCFF317CPO.bigWig released s3://encode-public/2016/02/03/7f6b4afb-852e-4243-859e-155889b8b87a/ENCFF317CPO.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF205FZS fastq fastq reads ENCSR508AYF Control ChIP-seq /fly-donors/ENCDO794LPW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44272/'], '@type': ['Target', 'Item'], 'name': 'tio-dmelanogaster', 'label': 'tio', '@id': '/targets/tio-dmelanogaster/', 'title': 'tio (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2cf1d625-1688-49c0-8499-559974c73a08', 'status': 'released'} dm3 2L 21993797 22071185 DNA 2017-12-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1156371529 Kevin White, UChicago b2506d26a1a47dd507764384858f43b7 https://www.encodeproject.org/files/ENCFF205FZS/@@download/ENCFF205FZS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/eb536e3c-07cd-4748-ab34-3f63f1562c79/ENCFF205FZS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF084WHE bam bam alignments dm3 ENCSR508AYF Control ChIP-seq /fly-donors/ENCDO794LPW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44272/'], '@type': ['Target', 'Item'], 'name': 'tio-dmelanogaster', 'label': 'tio', '@id': '/targets/tio-dmelanogaster/', 'title': 'tio (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2cf1d625-1688-49c0-8499-559974c73a08', 'status': 'released'} dm3 2L 21993797 22071185 DNA 2017-12-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF205FZS/, /files/ENCFF059UHX/ 1594831209 Kevin White, UChicago 78a16b1082b678e13aa4e3b2e85b7d10 https://www.encodeproject.org/files/ENCFF084WHE/@@download/ENCFF084WHE.bam released s3://encode-public/2016/12/23/4e9cf857-527c-4565-a566-92db88d5ebff/ENCFF084WHE.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF510CPW bam bam alignments dm6 ENCSR508AYF Control ChIP-seq /fly-donors/ENCDO794LPW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44272/'], '@type': ['Target', 'Item'], 'name': 'tio-dmelanogaster', 'label': 'tio', '@id': '/targets/tio-dmelanogaster/', 'title': 'tio (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2cf1d625-1688-49c0-8499-559974c73a08', 'status': 'released'} dm3 2L 21993797 22071185 DNA 2017-12-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF205FZS/, /files/ENCFF479RCH/ 1585175980 Kevin White, UChicago 004ac2ab0fbc6f20077ca227d3d9515b https://www.encodeproject.org/files/ENCFF510CPW/@@download/ENCFF510CPW.bam released s3://encode-public/2016/12/23/419cc818-0cbc-4700-bd8e-9c925fde1a1e/ENCFF510CPW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF193VZO bigWig bigWig signal of unique reads dm3 ENCSR508AYF Control ChIP-seq /fly-donors/ENCDO794LPW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44272/'], '@type': ['Target', 'Item'], 'name': 'tio-dmelanogaster', 'label': 'tio', '@id': '/targets/tio-dmelanogaster/', 'title': 'tio (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2cf1d625-1688-49c0-8499-559974c73a08', 'status': 'released'} dm3 2L 21993797 22071185 DNA 2017-12-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF084WHE/ 15639791 Kevin White, UChicago 56c2f588228c64006ba0eebbecaa0f26 https://www.encodeproject.org/files/ENCFF193VZO/@@download/ENCFF193VZO.bigWig released s3://encode-public/2017/01/03/72f39f89-4fd9-4026-a429-ddb9f897fd51/ENCFF193VZO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF417UFF bigWig bigWig read-depth normalized signal dm3 ENCSR508AYF Control ChIP-seq /fly-donors/ENCDO794LPW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44272/'], '@type': ['Target', 'Item'], 'name': 'tio-dmelanogaster', 'label': 'tio', '@id': '/targets/tio-dmelanogaster/', 'title': 'tio (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2cf1d625-1688-49c0-8499-559974c73a08', 'status': 'released'} dm3 2L 21993797 22071185 DNA 2017-12-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF084WHE/ 15581455 Kevin White, UChicago 34d442237094d4512acae0f0026643a8 https://www.encodeproject.org/files/ENCFF417UFF/@@download/ENCFF417UFF.bigWig released s3://encode-public/2017/01/03/f7493f00-a651-4972-8c7d-00b57266caff/ENCFF417UFF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF486FST bigWig bigWig signal of unique reads dm6 ENCSR508AYF Control ChIP-seq /fly-donors/ENCDO794LPW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44272/'], '@type': ['Target', 'Item'], 'name': 'tio-dmelanogaster', 'label': 'tio', '@id': '/targets/tio-dmelanogaster/', 'title': 'tio (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2cf1d625-1688-49c0-8499-559974c73a08', 'status': 'released'} dm3 2L 21993797 22071185 DNA 2017-12-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF510CPW/ 17681037 Kevin White, UChicago 1cd3c6f6b8b40a34023a464798a24a22 https://www.encodeproject.org/files/ENCFF486FST/@@download/ENCFF486FST.bigWig released s3://encode-public/2017/01/04/d609e655-ea91-4914-884d-8ec24c55e089/ENCFF486FST.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF624GWO bigWig bigWig read-depth normalized signal dm6 ENCSR508AYF Control ChIP-seq /fly-donors/ENCDO794LPW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44272/'], '@type': ['Target', 'Item'], 'name': 'tio-dmelanogaster', 'label': 'tio', '@id': '/targets/tio-dmelanogaster/', 'title': 'tio (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2cf1d625-1688-49c0-8499-559974c73a08', 'status': 'released'} dm3 2L 21993797 22071185 DNA 2017-12-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF510CPW/ 17603857 Kevin White, UChicago 7526a49a91596671875ea19c24e9ef41 https://www.encodeproject.org/files/ENCFF624GWO/@@download/ENCFF624GWO.bigWig released s3://encode-public/2017/01/04/e97f9430-1da3-48c6-9a17-1b4fc700211e/ENCFF624GWO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF961CWK fastq fastq reads ENCSR081PIH Control ChIP-seq /fly-donors/ENCDO685UXP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35332/'], '@type': ['Target', 'Item'], 'name': 'Hr38-dmelanogaster', 'label': 'Hr38', '@id': '/targets/Hr38-dmelanogaster/', 'title': 'Hr38 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e122293a-9c70-4366-a0c0-e88e8cdbfec1', 'status': 'released'} dm3 2L 20671973 20744437 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 50 single-ended 1518740566 Kevin White, UChicago 805498db421fbb61a7277e93297664b2 https://www.encodeproject.org/files/ENCFF961CWK/@@download/ENCFF961CWK.fastq.gz Illumina HiSeq 2500 /files/ENCFF486WJM/ released s3://encode-public/2015/07/23/489a0e1d-8bde-4880-a99b-6fa2ea439bda/ENCFF961CWK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF204SVE bam bam alignments dm3 ENCSR081PIH Control ChIP-seq /fly-donors/ENCDO685UXP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35332/'], '@type': ['Target', 'Item'], 'name': 'Hr38-dmelanogaster', 'label': 'Hr38', '@id': '/targets/Hr38-dmelanogaster/', 'title': 'Hr38 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e122293a-9c70-4366-a0c0-e88e8cdbfec1', 'status': 'released'} dm3 2L 20671973 20744437 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF961CWK/ 2048078991 Kevin White, UChicago bf8615912ca3af0966e281ce9bcb513c https://www.encodeproject.org/files/ENCFF204SVE/@@download/ENCFF204SVE.bam released s3://encode-public/2015/08/03/b641f3cf-6bc7-4f68-8cc3-faace874a81a/ENCFF204SVE.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF733WNV bigWig bigWig read-depth normalized signal dm3 ENCSR081PIH Control ChIP-seq /fly-donors/ENCDO685UXP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35332/'], '@type': ['Target', 'Item'], 'name': 'Hr38-dmelanogaster', 'label': 'Hr38', '@id': '/targets/Hr38-dmelanogaster/', 'title': 'Hr38 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e122293a-9c70-4366-a0c0-e88e8cdbfec1', 'status': 'released'} dm3 2L 20671973 20744437 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF204SVE/ 15475161 Kevin White, UChicago 5968ca92f52fc1a360b1ecceb2e09843 https://www.encodeproject.org/files/ENCFF733WNV/@@download/ENCFF733WNV.bigWig released s3://encode-public/2015/10/06/0158460d-c744-4a85-b338-a07ed977d56b/ENCFF733WNV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF411WPU bigWig bigWig signal of unique reads dm3 ENCSR081PIH Control ChIP-seq /fly-donors/ENCDO685UXP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35332/'], '@type': ['Target', 'Item'], 'name': 'Hr38-dmelanogaster', 'label': 'Hr38', '@id': '/targets/Hr38-dmelanogaster/', 'title': 'Hr38 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e122293a-9c70-4366-a0c0-e88e8cdbfec1', 'status': 'released'} dm3 2L 20671973 20744437 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF204SVE/ 15498783 Kevin White, UChicago 4c68fcd3039a75f45e2346fd0f775b20 https://www.encodeproject.org/files/ENCFF411WPU/@@download/ENCFF411WPU.bigWig released s3://encode-public/2015/10/06/b0f793d4-413d-4680-b1e3-5cc224d8887a/ENCFF411WPU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF823SSP bam bam alignments dm6 ENCSR081PIH Control ChIP-seq /fly-donors/ENCDO685UXP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35332/'], '@type': ['Target', 'Item'], 'name': 'Hr38-dmelanogaster', 'label': 'Hr38', '@id': '/targets/Hr38-dmelanogaster/', 'title': 'Hr38 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e122293a-9c70-4366-a0c0-e88e8cdbfec1', 'status': 'released'} dm3 2L 20671973 20744437 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF961CWK/ 2045830164 Kevin White, UChicago cc6c2d4f31b15209be741c8a3bf8e8f3 https://www.encodeproject.org/files/ENCFF823SSP/@@download/ENCFF823SSP.bam released s3://encode-public/2016/04/21/1573fa91-b343-4e59-bb20-e6feba743b24/ENCFF823SSP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF005HEJ bigWig bigWig signal of unique reads dm6 ENCSR081PIH Control ChIP-seq /fly-donors/ENCDO685UXP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35332/'], '@type': ['Target', 'Item'], 'name': 'Hr38-dmelanogaster', 'label': 'Hr38', '@id': '/targets/Hr38-dmelanogaster/', 'title': 'Hr38 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e122293a-9c70-4366-a0c0-e88e8cdbfec1', 'status': 'released'} dm3 2L 20671973 20744437 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF823SSP/ 17575465 Kevin White, UChicago 580d56d9f158fa04e91e776ef1cb0d84 https://www.encodeproject.org/files/ENCFF005HEJ/@@download/ENCFF005HEJ.bigWig released s3://encode-public/2016/06/20/85cc0b78-2969-4a69-8ae7-dfa2f9059270/ENCFF005HEJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF772YNF bigWig bigWig read-depth normalized signal dm6 ENCSR081PIH Control ChIP-seq /fly-donors/ENCDO685UXP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35332/'], '@type': ['Target', 'Item'], 'name': 'Hr38-dmelanogaster', 'label': 'Hr38', '@id': '/targets/Hr38-dmelanogaster/', 'title': 'Hr38 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e122293a-9c70-4366-a0c0-e88e8cdbfec1', 'status': 'released'} dm3 2L 20671973 20744437 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF823SSP/ 17558750 Kevin White, UChicago bf44a33f4a6df36391784d0bb967a344 https://www.encodeproject.org/files/ENCFF772YNF/@@download/ENCFF772YNF.bigWig released s3://encode-public/2016/06/20/09515cf3-89bd-400e-9416-604e881d8364/ENCFF772YNF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001KQY bam bam alignments mm9 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1 1_1 36 /files/ENCFF001KRJ/ 364351689 Bing Ren, UCSD 9abbbb4e032be425f553b48ed78f052a https://www.encodeproject.org/files/ENCFF001KQY/@@download/ENCFF001KQY.bam archived s3://encode-public/2011/12/23/a127a308-dccc-4c61-90fa-07d57b719126/ENCFF001KQY.bam Lab custom mm9 archived low read length insufficient read depth ENCFF001KRB bam bam alignments mm9 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 2 2_1 36 /files/ENCFF001KRK/ 409913356 Bing Ren, UCSD d1389eb3ff084ba31eeaf84393ccd05a https://www.encodeproject.org/files/ENCFF001KRB/@@download/ENCFF001KRB.bam archived s3://encode-public/2011/12/23/e233574a-7230-4596-a1e3-979facb83c2c/ENCFF001KRB.bam Lab custom mm9 archived low read length insufficient read depth ENCFF001KRC bigWig bigWig signal mm9 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1, 2 1_1, 2_1 /files/ENCFF001KRB/, /files/ENCFF001KQY/ 69276820 Bing Ren, UCSD 926c64beda2f566d2cfc7fad456083f9 https://www.encodeproject.org/files/ENCFF001KRC/@@download/ENCFF001KRC.bigWig archived s3://encode-public/2011/12/23/9768347d-574a-4af2-a337-08fb80263739/ENCFF001KRC.bigWig Lab custom mm9 archived low read length insufficient read depth ENCFF001KRJ fastq fastq reads ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1 1_1 36 single-ended 337624775 Bing Ren, UCSD 7e4dbde364ebcf3c159a7cd0b254aff4 https://www.encodeproject.org/files/ENCFF001KRJ/@@download/ENCFF001KRJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/c9e23258-f7e3-4e61-8074-3f547c296ada/ENCFF001KRJ.fastq.gz low read length insufficient read depth ENCFF001KRK fastq fastq reads ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 2 2_1 36 single-ended 379664653 Bing Ren, UCSD 245d9aabc5f6f70a7e0fb200fb03e59e https://www.encodeproject.org/files/ENCFF001KRK/@@download/ENCFF001KRK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/088540a1-32e1-4c72-8923-2a42c6c59d59/ENCFF001KRK.fastq.gz low read length insufficient read depth ENCFF337URA bam bam unfiltered alignments mm10-minimal ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 2 2_1 36 /files/ENCFF001KRK/, /files/ENCFF806TVZ/ 462410262 J. Michael Cherry, Stanford e5531142c1a9c79d0795f50f7eca23c6 https://www.encodeproject.org/files/ENCFF337URA/@@download/ENCFF337URA.bam archived s3://encode-public/2015/02/09/4bf6c64e-6fde-4442-99d0-059bfebc685c/ENCFF337URA.bam ENCODE3 mm10-minimal archived low read length insufficient read depth ENCFF352INQ bam bam unfiltered alignments mm10-minimal ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1 1_1 36 /files/ENCFF001KRJ/, /files/ENCFF806TVZ/ 411142755 J. Michael Cherry, Stanford ead1e6a7cbe0d7b6caa908dfcc614cf9 https://www.encodeproject.org/files/ENCFF352INQ/@@download/ENCFF352INQ.bam archived s3://encode-public/2015/02/09/d8673863-9126-4a97-b43b-0929471aac6a/ENCFF352INQ.bam ENCODE3 mm10-minimal archived low read length insufficient read depth ENCFF780TFB bam bam alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KRK/ 319511950 ENCODE Processing Pipeline 666a320423226908f400c2b18d8273bf https://www.encodeproject.org/files/ENCFF780TFB/@@download/ENCFF780TFB.bam released s3://encode-public/2016/04/28/a2cdd6a5-4f85-4b68-a934-e750dd4166b9/ENCFF780TFB.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF342BIA bam bam alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KRJ/ 283918783 ENCODE Processing Pipeline f087652c4274db1a63b6967837ca2a9a https://www.encodeproject.org/files/ENCFF342BIA/@@download/ENCFF342BIA.bam released s3://encode-public/2016/04/28/210e37c0-c7e4-44ac-8541-4a2566d4978a/ENCFF342BIA.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF607DVT bam bam unfiltered alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KRJ/ 411873632 ENCODE Processing Pipeline 8f209f18f19f0f1664a0ad9b1183336c https://www.encodeproject.org/files/ENCFF607DVT/@@download/ENCFF607DVT.bam released s3://encode-public/2016/07/06/da4b3e3e-8013-4c71-ac2c-1bf0819bf290/ENCFF607DVT.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF250YTQ bam bam unfiltered alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KRK/ 463194348 ENCODE Processing Pipeline a79f801b962b93e7fae9bd7b936bc704 https://www.encodeproject.org/files/ENCFF250YTQ/@@download/ENCFF250YTQ.bam released s3://encode-public/2016/07/06/703f0514-2e4a-4c3f-a850-19392b8510c5/ENCFF250YTQ.bam ENCODE3 mm10 archived low read length insufficient read depth ENCFF065TFN bam bam alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KRK/ 342130101 ENCODE Processing Pipeline ca60b93aff3d0548e17099657ed5c9c1 https://www.encodeproject.org/files/ENCFF065TFN/@@download/ENCFF065TFN.bam released s3://encode-public/2020/10/12/be776698-e460-425d-a44c-f8bed19147b1/ENCFF065TFN.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth ENCFF792BAU bam bam alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KRJ/ 304027915 ENCODE Processing Pipeline c96c269a4526179020c0cbf4fa0420d4 https://www.encodeproject.org/files/ENCFF792BAU/@@download/ENCFF792BAU.bam released s3://encode-public/2020/10/12/56810d27-8b2d-4b65-b31a-be19dc323815/ENCFF792BAU.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth ENCFF212ZZD bam bam unfiltered alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KRK/ 453966826 ENCODE Processing Pipeline 0560775d2334e74eaad4eb0ab639d7ac https://www.encodeproject.org/files/ENCFF212ZZD/@@download/ENCFF212ZZD.bam released s3://encode-public/2020/10/12/f677e163-5bc2-450e-b67a-d08ef86c9bae/ENCFF212ZZD.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth ENCFF126OJD bam bam unfiltered alignments mm10 ENCSR000CEY Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus DNA 2012-03-28 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KRJ/ 403684821 ENCODE Processing Pipeline 9170b32476bcefa5a922fbacb937a90d https://www.encodeproject.org/files/ENCFF126OJD/@@download/ENCFF126OJD.bam released s3://encode-public/2020/10/12/d5371f39-b4a3-476c-98c4-9d2e09786a8c/ENCFF126OJD.bam ENCODE4 v1.5.1 mm10 released low read length insufficient read depth ENCFF001MQU bam bam alignments mm9 ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRC/ 1622958631 Ross Hardison, PennState b612c0c8f6809bd4c37a2579588e7982 https://www.encodeproject.org/files/ENCFF001MQU/@@download/ENCFF001MQU.bam archived s3://encode-public/2011/11/05/4b53adc6-bdd4-410c-8a01-fd3a454d7434/ENCFF001MQU.bam Lab custom mm9 archived low read length ENCFF001MQV bigWig bigWig signal mm9 ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 2667622796 Ross Hardison, PennState 701b63d566d155675061e350427e0813 https://www.encodeproject.org/files/ENCFF001MQV/@@download/ENCFF001MQV.bigWig archived s3://encode-public/2011/11/05/95a64f3a-8daa-46d9-83e9-40d9b020c502/ENCFF001MQV.bigWig Lab custom mm9 archived low read length ENCFF001MRC fastq fastq reads ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 single-ended 1321661181 Ross Hardison, PennState e3f9fdc06c7843426c2b33b2e1206ac8 https://www.encodeproject.org/files/ENCFF001MRC/@@download/ENCFF001MRC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/47a59e8d-ba42-47e3-a2c1-16a6adf3f88d/ENCFF001MRC.fastq.gz low read length ENCFF359SJP bam bam unfiltered alignments mm10-minimal ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRC/ 1710951030 J. Michael Cherry, Stanford 397d8ed52b49f218e5f204638627631c https://www.encodeproject.org/files/ENCFF359SJP/@@download/ENCFF359SJP.bam archived s3://encode-public/2015/02/04/6be79fea-159a-4e79-a957-63c75a436368/ENCFF359SJP.bam ENCODE3 mm10-minimal archived low read length ENCFF168PUJ bam bam alignments mm10-minimal ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRC/ 1261203251 J. Michael Cherry, Stanford 226b81e6df23838c2d2edec13b83e099 https://www.encodeproject.org/files/ENCFF168PUJ/@@download/ENCFF168PUJ.bam archived s3://encode-public/2015/05/23/ee682afc-81e6-4b1a-8d1d-9c748d72a639/ENCFF168PUJ.bam ENCODE3 mm10-minimal archived low read length ENCFF569KHV bam bam unfiltered alignments mm10 ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF018NEO/, /files/ENCFF001MRC/ 1712540270 ENCODE Processing Pipeline b715a426b1acb0d40975566814e27ee9 https://www.encodeproject.org/files/ENCFF569KHV/@@download/ENCFF569KHV.bam released s3://encode-public/2016/10/26/486d17f3-b2c8-4ee2-98e8-416e03af5cf6/ENCFF569KHV.bam ENCODE3 mm10 archived low read length ENCFF050IRU bam bam alignments mm10 ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF018NEO/, /files/ENCFF001MRC/ 1260676154 ENCODE Processing Pipeline cedf9310886ead1f1a141fc36ebba8ed https://www.encodeproject.org/files/ENCFF050IRU/@@download/ENCFF050IRU.bam released s3://encode-public/2016/10/26/decff362-44ae-4a78-afba-77c87e3a9116/ENCFF050IRU.bam ENCODE3 mm10 archived low read length ENCFF936FRR bam bam unfiltered alignments mm10 ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRC/, /files/ENCFF309GLL/ 1704559756 ENCODE Processing Pipeline fbaaae92612c80486018ff93a5b10e9b https://www.encodeproject.org/files/ENCFF936FRR/@@download/ENCFF936FRR.bam released s3://encode-public/2020/11/06/8e59bc33-22f8-4aa6-a2ec-257731f8cff6/ENCFF936FRR.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF311THL bam bam alignments mm10 ENCSR000DGT Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 30 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRC/, /files/ENCFF309GLL/ 1277384960 ENCODE Processing Pipeline 94c813034006245979492ea3484e30d6 https://www.encodeproject.org/files/ENCFF311THL/@@download/ENCFF311THL.bam released s3://encode-public/2020/11/06/5deed3b6-b785-4c82-86b6-7ae0a41d7812/ENCFF311THL.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF683WBG fastq fastq reads ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 293966313 Kevin White, UChicago b3e8bf45cca21c9956a9a463c31e2518 https://www.encodeproject.org/files/ENCFF683WBG/@@download/ENCFF683WBG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/6580db52-89a4-4e44-97f3-c641c8b8aed6/ENCFF683WBG.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF483ILB bam bam alignments dm3 ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF683WBG/, /files/ENCFF182AZZ/, /files/ENCFF059UHX/ 4552128448 Kevin White, UChicago 64bcf086f7db76335f52d705e3854550 https://www.encodeproject.org/files/ENCFF483ILB/@@download/ENCFF483ILB.bam released s3://encode-public/2018/01/16/15f50ebe-02f9-4648-bf46-d69bdcb7e7da/ENCFF483ILB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF623AEI bam bam alignments dm6 ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF683WBG/, /files/ENCFF182AZZ/, /files/ENCFF479RCH/ 4532915295 Kevin White, UChicago 3d22b79da70e1b9fd06554e2852a78aa https://www.encodeproject.org/files/ENCFF623AEI/@@download/ENCFF623AEI.bam released s3://encode-public/2018/01/16/c8998d5f-6513-413e-b957-d14663aba1ea/ENCFF623AEI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF473ZJN bigWig bigWig read-depth normalized signal dm6 ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623AEI/ 18032736 Kevin White, UChicago 5e51c187f500eff4461c474c99fa1b9b https://www.encodeproject.org/files/ENCFF473ZJN/@@download/ENCFF473ZJN.bigWig released s3://encode-public/2018/01/16/6879450c-16d4-4699-8761-b4b799bc6745/ENCFF473ZJN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF870NCN bigWig bigWig signal of unique reads dm3 ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF483ILB/ 15996499 Kevin White, UChicago 367f5adccae14b3be6e7201c150032b9 https://www.encodeproject.org/files/ENCFF870NCN/@@download/ENCFF870NCN.bigWig released s3://encode-public/2018/01/16/1bc52085-d4f0-4e1c-809e-ea43e67cc627/ENCFF870NCN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF030GZL bigWig bigWig signal of unique reads dm6 ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623AEI/ 17987075 Kevin White, UChicago 43aa0e53908548127b21794fdcff540c https://www.encodeproject.org/files/ENCFF030GZL/@@download/ENCFF030GZL.bigWig released s3://encode-public/2018/01/16/59c37218-6694-4bc9-82d2-96779e38c405/ENCFF030GZL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF822PFA bigWig bigWig read-depth normalized signal dm3 ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF483ILB/ 16022960 Kevin White, UChicago d8443e40317da364a1e4b7e731b94833 https://www.encodeproject.org/files/ENCFF822PFA/@@download/ENCFF822PFA.bigWig released s3://encode-public/2018/01/16/6ea7f739-edfa-458c-abda-c57cc7c1dc1f/ENCFF822PFA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF182AZZ fastq fastq reads ENCSR100SUV Control ChIP-seq /fly-donors/ENCDO282TMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42391/'], '@type': ['Target', 'Item'], 'name': 'CG4854-dmelanogaster', 'label': 'CG4854', '@id': '/targets/CG4854-dmelanogaster/', 'title': 'CG4854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b682c886-8bfb-4052-b2a8-67324ddf4217', 'status': 'released'} dm3 3R 15840937 15860909 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3004691442 Kevin White, UChicago dced9d5ae293192c4fd69d5c00bd7356 https://www.encodeproject.org/files/ENCFF182AZZ/@@download/ENCFF182AZZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/16/05ca60a0-1540-48d0-9faf-ec237fc165e5/ENCFF182AZZ.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF861GXM fastq fastq reads ENCSR904QAP Control ChIP-seq /fly-donors/ENCDO211YAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38995/'], '@type': ['Target', 'Item'], 'name': 'h-dmelanogaster', 'label': 'h', '@id': '/targets/h-dmelanogaster/', 'title': 'h (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a6edb117-bfcd-4131-9e0e-25f4cef4ebfa', 'status': 'released'} dm3 3L 8662409 8680857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 589145466 Kevin White, UChicago 1a7ae183be8ab72d20b417e507c4346b https://www.encodeproject.org/files/ENCFF861GXM/@@download/ENCFF861GXM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/82011d73-50b3-4c51-99bf-5ee80d2b4f93/ENCFF861GXM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF538THV bam bam alignments dm3 ENCSR904QAP Control ChIP-seq /fly-donors/ENCDO211YAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38995/'], '@type': ['Target', 'Item'], 'name': 'h-dmelanogaster', 'label': 'h', '@id': '/targets/h-dmelanogaster/', 'title': 'h (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a6edb117-bfcd-4131-9e0e-25f4cef4ebfa', 'status': 'released'} dm3 3L 8662409 8680857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF861GXM/ 853999261 Kevin White, UChicago 054a98db43a293d4820c6c739203e536 https://www.encodeproject.org/files/ENCFF538THV/@@download/ENCFF538THV.bam released s3://encode-public/2015/08/03/e143e268-14ad-453e-bef9-2afc9f466d63/ENCFF538THV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF089EWR bigWig bigWig signal of unique reads dm3 ENCSR904QAP Control ChIP-seq /fly-donors/ENCDO211YAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38995/'], '@type': ['Target', 'Item'], 'name': 'h-dmelanogaster', 'label': 'h', '@id': '/targets/h-dmelanogaster/', 'title': 'h (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a6edb117-bfcd-4131-9e0e-25f4cef4ebfa', 'status': 'released'} dm3 3L 8662409 8680857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF538THV/ 15184308 Kevin White, UChicago c4a9c213506f9e2294103b423651dc9d https://www.encodeproject.org/files/ENCFF089EWR/@@download/ENCFF089EWR.bigWig released s3://encode-public/2015/10/06/8942d266-7d80-4d6c-9e4d-e26a39a3b77e/ENCFF089EWR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF002GQA bigWig bigWig read-depth normalized signal dm3 ENCSR904QAP Control ChIP-seq /fly-donors/ENCDO211YAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38995/'], '@type': ['Target', 'Item'], 'name': 'h-dmelanogaster', 'label': 'h', '@id': '/targets/h-dmelanogaster/', 'title': 'h (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a6edb117-bfcd-4131-9e0e-25f4cef4ebfa', 'status': 'released'} dm3 3L 8662409 8680857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF538THV/ 15179006 Kevin White, UChicago 5e296510d640ab850824e105bc921f85 https://www.encodeproject.org/files/ENCFF002GQA/@@download/ENCFF002GQA.bigWig released s3://encode-public/2015/10/06/ad84570b-d374-4b26-a19a-61c77f38f5ac/ENCFF002GQA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF547OEZ bam bam alignments dm6 ENCSR904QAP Control ChIP-seq /fly-donors/ENCDO211YAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38995/'], '@type': ['Target', 'Item'], 'name': 'h-dmelanogaster', 'label': 'h', '@id': '/targets/h-dmelanogaster/', 'title': 'h (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a6edb117-bfcd-4131-9e0e-25f4cef4ebfa', 'status': 'released'} dm3 3L 8662409 8680857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF861GXM/ 848401566 Kevin White, UChicago ca816817802fee86005479bdf7b23612 https://www.encodeproject.org/files/ENCFF547OEZ/@@download/ENCFF547OEZ.bam released s3://encode-public/2016/04/21/3ea330d6-74f7-483a-9045-afe6ca3a901e/ENCFF547OEZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF972KWP bigWig bigWig signal of unique reads dm6 ENCSR904QAP Control ChIP-seq /fly-donors/ENCDO211YAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38995/'], '@type': ['Target', 'Item'], 'name': 'h-dmelanogaster', 'label': 'h', '@id': '/targets/h-dmelanogaster/', 'title': 'h (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a6edb117-bfcd-4131-9e0e-25f4cef4ebfa', 'status': 'released'} dm3 3L 8662409 8680857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547OEZ/ 17287076 Kevin White, UChicago 8f85c4fbc22315faeefadbe14ca0a939 https://www.encodeproject.org/files/ENCFF972KWP/@@download/ENCFF972KWP.bigWig released s3://encode-public/2016/06/21/763a8a58-db27-4e7b-a003-9c2995fa0413/ENCFF972KWP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF380OPL bigWig bigWig read-depth normalized signal dm6 ENCSR904QAP Control ChIP-seq /fly-donors/ENCDO211YAR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38995/'], '@type': ['Target', 'Item'], 'name': 'h-dmelanogaster', 'label': 'h', '@id': '/targets/h-dmelanogaster/', 'title': 'h (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a6edb117-bfcd-4131-9e0e-25f4cef4ebfa', 'status': 'released'} dm3 3L 8662409 8680857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547OEZ/ 17286969 Kevin White, UChicago 8f48a7f127691f64b753f2bb3a3ac76c https://www.encodeproject.org/files/ENCFF380OPL/@@download/ENCFF380OPL.bigWig released s3://encode-public/2016/06/21/13988788-e5aa-4883-a708-d77a5546d367/ENCFF380OPL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002AQD fastq fastq reads ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 961194831 Bing Ren, UCSD 2107d2861d428090b012bd5f97140914 SRA:SRR3652945 https://www.encodeproject.org/files/ENCFF002AQD/@@download/ENCFF002AQD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/03/15/3adb2020-83b7-462e-847d-88a5a69f7d84/ENCFF002AQD.fastq.gz low read depth ENCFF002AQH fastq fastq reads ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1014391791 Bing Ren, UCSD c518eaf4b07a8b075a8a2ddc6859adeb SRA:SRR3652946 https://www.encodeproject.org/files/ENCFF002AQH/@@download/ENCFF002AQH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/03/15/0dc00c58-4ed7-4607-b881-5f916f69b88e/ENCFF002AQH.fastq.gz low read depth ENCFF833WXB bam bam unfiltered alignments mm10-minimal ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQD/ 1015076607 ENCODE Processing Pipeline 071e3f2b473a43d79c5944d08dd8e669 https://www.encodeproject.org/files/ENCFF833WXB/@@download/ENCFF833WXB.bam archived s3://encode-public/2015/02/09/848ef439-8d84-4393-a5c4-9bf3344af1a7/ENCFF833WXB.bam low read depth ENCFF990QFT bam bam unfiltered alignments mm10-minimal ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQH/ 1068491555 ENCODE Processing Pipeline 8e6693a10606e15d91edc48e9a467e71 https://www.encodeproject.org/files/ENCFF990QFT/@@download/ENCFF990QFT.bam archived s3://encode-public/2015/02/09/98735b14-1742-424f-bb5f-e176cbb76b68/ENCFF990QFT.bam low read depth ENCFF999ZTB bam bam alignments mm10-minimal ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQH/ 616905470 ENCODE Processing Pipeline 138afc1e194a0e2d6dcfe001d964f741 https://www.encodeproject.org/files/ENCFF999ZTB/@@download/ENCFF999ZTB.bam archived s3://encode-public/2015/05/24/1ee3cbd4-070b-4773-b32f-a8e7e4cedc09/ENCFF999ZTB.bam low read depth ENCFF015AUK bam bam alignments mm10-minimal ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQD/ 593102134 ENCODE Processing Pipeline 1a23cbcb9a69fd2d75014fedb1667a70 https://www.encodeproject.org/files/ENCFF015AUK/@@download/ENCFF015AUK.bam archived s3://encode-public/2015/05/24/65083ac0-0aee-4df8-b111-8ce0e8520019/ENCFF015AUK.bam low read depth ENCFF593AHB bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQH/ 1069201333 ENCODE Processing Pipeline 5f08e8ee551d9dd5468a21d5928cc883 https://www.encodeproject.org/files/ENCFF593AHB/@@download/ENCFF593AHB.bam released s3://encode-public/2016/05/20/985e692f-7a42-456b-8190-44b7522d902a/ENCFF593AHB.bam ENCODE3 mm10 archived low read depth ENCFF863NZX bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQH/ 616707328 ENCODE Processing Pipeline ff2b43332d872fdccf769705402cbd69 https://www.encodeproject.org/files/ENCFF863NZX/@@download/ENCFF863NZX.bam released s3://encode-public/2016/05/20/5b2e0462-5183-414b-bd46-95deb4596a46/ENCFF863NZX.bam ENCODE3 mm10 archived low read depth ENCFF822IDO bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQD/ 1015830702 ENCODE Processing Pipeline 34f87d7e694d0f9fe3f025dda63f9172 https://www.encodeproject.org/files/ENCFF822IDO/@@download/ENCFF822IDO.bam released s3://encode-public/2016/05/20/be913cb9-9241-40d6-bfc1-dbc9d99993d3/ENCFF822IDO.bam ENCODE3 mm10 archived low read depth ENCFF399OUP bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQD/ 592939093 ENCODE Processing Pipeline e3b01203d4faa133f9a4dbd6d143a1f7 https://www.encodeproject.org/files/ENCFF399OUP/@@download/ENCFF399OUP.bam released s3://encode-public/2016/05/20/f36febd8-04fa-40d3-b761-1ad42f13c14f/ENCFF399OUP.bam ENCODE3 mm10 archived low read depth ENCFF242XYX bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQH/ 881918589 ENCODE Processing Pipeline 5aa81c1fc394db8f38d7fda84f526532 https://www.encodeproject.org/files/ENCFF242XYX/@@download/ENCFF242XYX.bam released s3://encode-public/2016/10/03/cc431f64-cd56-4cbe-8b56-7753e1d598ab/ENCFF242XYX.bam ENCODE3 mm10 archived low read depth ENCFF267IIS bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQD/ 837719027 ENCODE Processing Pipeline 041acdee9def9e28d0208e5ed2cb477f https://www.encodeproject.org/files/ENCFF267IIS/@@download/ENCFF267IIS.bam released s3://encode-public/2016/10/03/6a7fc391-f694-4e78-896f-b0305a022a73/ENCFF267IIS.bam ENCODE3 mm10 archived low read depth ENCFF957ZHQ bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQH/ 480389505 ENCODE Processing Pipeline 321e665f741d8a05a85573b4d467959b https://www.encodeproject.org/files/ENCFF957ZHQ/@@download/ENCFF957ZHQ.bam released s3://encode-public/2016/10/03/73d3ec40-cd3b-4b5d-8e2c-3292a9795df9/ENCFF957ZHQ.bam ENCODE3 mm10 archived low read depth ENCFF310BPU bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQD/ 459618619 ENCODE Processing Pipeline c5cb04eebd8bba2f55f7f0fbc602fac8 https://www.encodeproject.org/files/ENCFF310BPU/@@download/ENCFF310BPU.bam released s3://encode-public/2016/10/03/783c8dd9-3758-4061-b9ae-0a1321a3af1a/ENCFF310BPU.bam ENCODE3 mm10 archived low read depth ENCFF341AOK bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQH/, /files/ENCFF309GLL/ 606597123 ENCODE Processing Pipeline f548d681891723ff2d9a233c4b83b36c https://www.encodeproject.org/files/ENCFF341AOK/@@download/ENCFF341AOK.bam released s3://encode-public/2020/10/07/bdaa0495-9b5f-44e0-aa09-fa03fabad78f/ENCFF341AOK.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF683GJN bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQD/ 826849306 ENCODE Processing Pipeline dbc4a67e56a6f86d11f2f5037347796b https://www.encodeproject.org/files/ENCFF683GJN/@@download/ENCFF683GJN.bam released s3://encode-public/2020/10/10/f0b29e87-6e4a-4d4c-95c6-855eaad99658/ENCFF683GJN.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF622HUK bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQD/ 489746120 ENCODE Processing Pipeline 6ba8d46673b0c2a591f45448915333ad https://www.encodeproject.org/files/ENCFF622HUK/@@download/ENCFF622HUK.bam released s3://encode-public/2020/10/10/b3980c67-1bde-43a1-8edd-b52174d192c1/ENCFF622HUK.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF339MRH bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQH/, /files/ENCFF309GLL/ 871480456 ENCODE Processing Pipeline 55e7d0e6bf517983f465e096f4ac6991 https://www.encodeproject.org/files/ENCFF339MRH/@@download/ENCFF339MRH.bam released s3://encode-public/2020/10/10/6c7c9ae5-98f3-4dbf-8ff4-33f68bb051e0/ENCFF339MRH.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF248FFN bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQD/, /files/ENCFF309GLL/ 1021205221 ENCODE Processing Pipeline 0bba83666e121596b2c822665840a7ec https://www.encodeproject.org/files/ENCFF248FFN/@@download/ENCFF248FFN.bam released s3://encode-public/2020/10/07/033d073e-3959-4854-8cdc-72ed3a9c3e49/ENCFF248FFN.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF421FWE bam bam unfiltered alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002AQH/, /files/ENCFF309GLL/ 1077206807 ENCODE Processing Pipeline 401799c72c72b4a17d477f5f84512a42 https://www.encodeproject.org/files/ENCFF421FWE/@@download/ENCFF421FWE.bam released s3://encode-public/2020/10/07/ebc5909a-ee8d-47e5-abe5-47d790b54a41/ENCFF421FWE.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF234MOL bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002AQD/, /files/ENCFF309GLL/ 588520264 ENCODE Processing Pipeline 7dbed570228eb9d1639bbc3cdc4d63e2 https://www.encodeproject.org/files/ENCFF234MOL/@@download/ENCFF234MOL.bam released s3://encode-public/2020/10/07/1277c1d7-19f1-4fc1-a008-de1e56933ed2/ENCFF234MOL.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF969NDB bam bam alignments mm10 ENCSR742WLX Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQH/, /files/ENCFF309GLL/ 510600644 ENCODE Processing Pipeline b9232c7f52a29b6a6e8e6d6797c70cad https://www.encodeproject.org/files/ENCFF969NDB/@@download/ENCFF969NDB.bam released s3://encode-public/2020/10/10/4b0d4100-5c04-4807-b60e-f6f42381594c/ENCFF969NDB.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF001HVM bam bam alignments hg19 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVV/ 760371372 John Stamatoyannopoulos, UW 91cc4ef6fe3f3a73395231f47f34f46f https://www.encodeproject.org/files/ENCFF001HVM/@@download/ENCFF001HVM.bam archived s3://encode-public/2011/06/25/fb0c2f02-ffdd-4a56-9926-5617c8f24f00/ENCFF001HVM.bam Lab custom hg19 archived low read depth, low read length ENCFF001HVO bigWig bigWig raw signal hg19 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HVM/ 168490762 John Stamatoyannopoulos, UW 500a8a360642c904702e7eedd9266683 https://www.encodeproject.org/files/ENCFF001HVO/@@download/ENCFF001HVO.bigWig archived s3://encode-public/2011/06/25/42224155-0d84-4516-a800-c5bd081226a5/ENCFF001HVO.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HVV fastq fastq reads ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 817985015 John Stamatoyannopoulos, UW 3b6748477b2e844d5a025e81cacb0c8a https://www.encodeproject.org/files/ENCFF001HVV/@@download/ENCFF001HVV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/e7c0b411-3fb9-42eb-bb24-70d40b1d628a/ENCFF001HVV.fastq.gz low read depth, low read length ENCFF969GRO bam bam unfiltered alignments GRCh38 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HVV/ 1000098921 ENCODE Processing Pipeline 40c45c161ee7b23ad482f21dfd70a14e https://www.encodeproject.org/files/ENCFF969GRO/@@download/ENCFF969GRO.bam released s3://encode-public/2016/08/09/d9d5b53f-d91d-415f-a2db-c5e60ab6bfe6/ENCFF969GRO.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF962BWT bam bam alignments GRCh38 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HVV/ 686258700 ENCODE Processing Pipeline e534f6d90ce407b1368fb797c54c1a66 https://www.encodeproject.org/files/ENCFF962BWT/@@download/ENCFF962BWT.bam released s3://encode-public/2016/08/09/0fd92789-42e6-4190-8603-f2c6dfed04bd/ENCFF962BWT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF358LHD bam bam unfiltered alignments hg19 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HVV/ 995243345 ENCODE Processing Pipeline fd16ff268cbd73f1d1a17afa520710e7 https://www.encodeproject.org/files/ENCFF358LHD/@@download/ENCFF358LHD.bam released s3://encode-public/2016/11/13/48c331c1-a94d-4601-a42c-cfdba668d2dc/ENCFF358LHD.bam ENCODE3 hg19 archived low read depth, low read length ENCFF707BUF bam bam alignments hg19 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HVV/ 686395259 ENCODE Processing Pipeline f4db7111e838a2fdd53ac6f4b7700328 https://www.encodeproject.org/files/ENCFF707BUF/@@download/ENCFF707BUF.bam released s3://encode-public/2016/11/13/3db45b49-5c84-46f6-87ad-39c39a637e02/ENCFF707BUF.bam ENCODE3 hg19 archived low read depth, low read length ENCFF974ROC bam bam alignments GRCh38 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVV/, /files/ENCFF110MCL/ 753800614 ENCODE Processing Pipeline 7295627b2db80d06bff4f1a285bc6f73 https://www.encodeproject.org/files/ENCFF974ROC/@@download/ENCFF974ROC.bam released s3://encode-public/2020/09/03/6ba90a13-54c1-4ed5-aff0-a780fde5d5cd/ENCFF974ROC.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF439IOD bam bam unfiltered alignments GRCh38 ENCSR000DWT Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVV/, /files/ENCFF110MCL/ 979057511 ENCODE Processing Pipeline 57a762f0f39dbb45143f301b83b50e6d https://www.encodeproject.org/files/ENCFF439IOD/@@download/ENCFF439IOD.bam released s3://encode-public/2020/09/03/c9db838a-b7a1-49fc-ad38-72e648a20d93/ENCFF439IOD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF769KOH fastq fastq reads ENCSR854PLB Control ChIP-seq /fly-donors/ENCDO773XWP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34395/'], '@type': ['Target', 'Item'], 'name': 'GATAd-dmelanogaster', 'label': 'GATAd', '@id': '/targets/GATAd-dmelanogaster/', 'title': 'GATAd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8209076e-4a47-4ba7-a609-7d4ebccd7554', 'status': 'released'} dm3 2L 10321176 10343160 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 50 single-ended 859366048 Kevin White, UChicago 093b4f886f25ac71e9165a5ad79c943a https://www.encodeproject.org/files/ENCFF769KOH/@@download/ENCFF769KOH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/a20270ec-882d-4c24-b751-6e0380482deb/ENCFF769KOH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF593EHH bam bam alignments dm3 ENCSR854PLB Control ChIP-seq /fly-donors/ENCDO773XWP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34395/'], '@type': ['Target', 'Item'], 'name': 'GATAd-dmelanogaster', 'label': 'GATAd', '@id': '/targets/GATAd-dmelanogaster/', 'title': 'GATAd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8209076e-4a47-4ba7-a609-7d4ebccd7554', 'status': 'released'} dm3 2L 10321176 10343160 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF769KOH/ 1127067741 Kevin White, UChicago d25cf0204c6ebd81cccc4bdbc78ce1d7 https://www.encodeproject.org/files/ENCFF593EHH/@@download/ENCFF593EHH.bam released s3://encode-public/2015/08/03/6ea2e1ba-3a8b-4d9f-82c1-949dd4f78b14/ENCFF593EHH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF831WLX bigWig bigWig signal of unique reads dm3 ENCSR854PLB Control ChIP-seq /fly-donors/ENCDO773XWP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34395/'], '@type': ['Target', 'Item'], 'name': 'GATAd-dmelanogaster', 'label': 'GATAd', '@id': '/targets/GATAd-dmelanogaster/', 'title': 'GATAd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8209076e-4a47-4ba7-a609-7d4ebccd7554', 'status': 'released'} dm3 2L 10321176 10343160 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF593EHH/ 15211634 Kevin White, UChicago 40087a1ca20102298857631037c547e1 https://www.encodeproject.org/files/ENCFF831WLX/@@download/ENCFF831WLX.bigWig released s3://encode-public/2015/10/06/38463287-79b6-4d8f-a20e-c1e8c820ee48/ENCFF831WLX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF546CDD bigWig bigWig read-depth normalized signal dm3 ENCSR854PLB Control ChIP-seq /fly-donors/ENCDO773XWP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34395/'], '@type': ['Target', 'Item'], 'name': 'GATAd-dmelanogaster', 'label': 'GATAd', '@id': '/targets/GATAd-dmelanogaster/', 'title': 'GATAd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8209076e-4a47-4ba7-a609-7d4ebccd7554', 'status': 'released'} dm3 2L 10321176 10343160 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF593EHH/ 15213970 Kevin White, UChicago c5ba6f3bb7036401af87477ce8ab5372 https://www.encodeproject.org/files/ENCFF546CDD/@@download/ENCFF546CDD.bigWig released s3://encode-public/2015/10/06/e7c37fd3-727a-4e85-9ff3-0b698e1be85b/ENCFF546CDD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF741JHT bam bam alignments dm6 ENCSR854PLB Control ChIP-seq /fly-donors/ENCDO773XWP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34395/'], '@type': ['Target', 'Item'], 'name': 'GATAd-dmelanogaster', 'label': 'GATAd', '@id': '/targets/GATAd-dmelanogaster/', 'title': 'GATAd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8209076e-4a47-4ba7-a609-7d4ebccd7554', 'status': 'released'} dm3 2L 10321176 10343160 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF769KOH/ 1114100236 Kevin White, UChicago ea28954b7e736d513eeb6395b642edaf https://www.encodeproject.org/files/ENCFF741JHT/@@download/ENCFF741JHT.bam released s3://encode-public/2016/04/21/466be03b-6cb6-4b08-8d3a-12ab44e18a32/ENCFF741JHT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF753HEA bigWig bigWig read-depth normalized signal dm6 ENCSR854PLB Control ChIP-seq /fly-donors/ENCDO773XWP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34395/'], '@type': ['Target', 'Item'], 'name': 'GATAd-dmelanogaster', 'label': 'GATAd', '@id': '/targets/GATAd-dmelanogaster/', 'title': 'GATAd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8209076e-4a47-4ba7-a609-7d4ebccd7554', 'status': 'released'} dm3 2L 10321176 10343160 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF741JHT/ 17300198 Kevin White, UChicago 0604e27cc3459bdab728d1dec7a85e85 https://www.encodeproject.org/files/ENCFF753HEA/@@download/ENCFF753HEA.bigWig released s3://encode-public/2016/06/21/6c943d20-c066-4102-b62d-0596b89eb6dd/ENCFF753HEA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF399GTM bigWig bigWig signal of unique reads dm6 ENCSR854PLB Control ChIP-seq /fly-donors/ENCDO773XWP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34395/'], '@type': ['Target', 'Item'], 'name': 'GATAd-dmelanogaster', 'label': 'GATAd', '@id': '/targets/GATAd-dmelanogaster/', 'title': 'GATAd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8209076e-4a47-4ba7-a609-7d4ebccd7554', 'status': 'released'} dm3 2L 10321176 10343160 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF741JHT/ 17296941 Kevin White, UChicago 5f4b9961276529a74bd95ada841b16c6 https://www.encodeproject.org/files/ENCFF399GTM/@@download/ENCFF399GTM.bigWig released s3://encode-public/2016/06/21/3e54cb8b-fa1b-41c9-9ce8-d63b15462356/ENCFF399GTM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HIW bigWig bigWig raw signal hg19 ENCSR000DSX Control ChIP-seq /human-donors/ENCDO227AAA/ CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HIX/ 217582087 John Stamatoyannopoulos, UW cae49b3cb83211703208867a7a8d5b00 https://www.encodeproject.org/files/ENCFF001HIW/@@download/ENCFF001HIW.bigWig archived s3://encode-public/2011/06/25/92d163bb-0a61-4a95-91e9-ce7629205189/ENCFF001HIW.bigWig Lab custom hg19 archived low read length ENCFF001HIX bam bam alignments hg19 ENCSR000DSX Control ChIP-seq /human-donors/ENCDO227AAA/ CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HJJ/ 1153105573 John Stamatoyannopoulos, UW b95fbb76d9b076c2629583826db57dc5 https://www.encodeproject.org/files/ENCFF001HIX/@@download/ENCFF001HIX.bam archived s3://encode-public/2011/06/25/4e5f3396-885f-4685-b48a-d31073ba543f/ENCFF001HIX.bam Lab custom hg19 archived low read length ENCFF001HJJ fastq fastq reads ENCSR000DSX Control ChIP-seq /human-donors/ENCDO227AAA/ CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 1196469789 John Stamatoyannopoulos, UW 959ac35ce86cba6068b0ceda932fb066 https://www.encodeproject.org/files/ENCFF001HJJ/@@download/ENCFF001HJJ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/e5b830d3-7283-45d8-9aed-a4d971daa404/ENCFF001HJJ.fastq.gz low read length ENCFF908OBD bam bam unfiltered alignments GRCh38 ENCSR000DSX Control ChIP-seq /human-donors/ENCDO227AAA/ CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HJJ/ 1448657383 ENCODE Processing Pipeline 8b9e9bbda6413145258336f933643081 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Pipeline 0e28cd071a36cd8731b12739d61a41a3 https://www.encodeproject.org/files/ENCFF188FPI/@@download/ENCFF188FPI.bam released s3://encode-public/2016/11/13/d99de49d-65f0-408c-ba73-b2d4511e5084/ENCFF188FPI.bam ENCODE3 hg19 archived low read length ENCFF743ECZ bam bam unfiltered alignments hg19 ENCSR000DSX Control ChIP-seq /human-donors/ENCDO227AAA/ CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HJJ/ 1440658681 ENCODE Processing Pipeline 853d5e01a2daebd9c08a20cbae7344fb https://www.encodeproject.org/files/ENCFF743ECZ/@@download/ENCFF743ECZ.bam released s3://encode-public/2016/11/13/83a7af64-ed4e-47e4-b5f9-6c275ff50938/ENCFF743ECZ.bam ENCODE3 hg19 archived low read length ENCFF399ABQ bam bam unfiltered alignments GRCh38 ENCSR000DSX Control ChIP-seq /human-donors/ENCDO227AAA/ CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HJJ/ 1414413665 ENCODE Processing Pipeline 96e1c53caac971d24d6c050a61e7ed7b https://www.encodeproject.org/files/ENCFF399ABQ/@@download/ENCFF399ABQ.bam released s3://encode-public/2020/09/03/b382c0d8-739f-45c0-af88-c03f437165ea/ENCFF399ABQ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF794MOY bam bam alignments GRCh38 ENCSR000DSX Control ChIP-seq /human-donors/ENCDO227AAA/ CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HJJ/ 1166075122 ENCODE Processing Pipeline 84ae01c09cb6b59c9779d4e9fedddeea https://www.encodeproject.org/files/ENCFF794MOY/@@download/ENCFF794MOY.bam released s3://encode-public/2020/09/03/c968f871-68c0-415f-89d3-81b0c17a9422/ENCFF794MOY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF608CTR fastq fastq reads ENCSR826JGA Control ChIP-seq /fly-donors/ENCDO190QEL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31070/'], '@type': ['Target', 'Item'], 'name': 'CG11398-dmelanogaster', 'label': 'CG11398', '@id': '/targets/CG11398-dmelanogaster/', 'title': 'CG11398 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '88f6ba32-c154-4550-aa3f-c6ebac3641aa', 'status': 'released'} dm3 X 1094778 1119679 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 465860104 Kevin White, UChicago 4dc08e75fae3928a5b0a6fc7a007d10a https://www.encodeproject.org/files/ENCFF608CTR/@@download/ENCFF608CTR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/8cc78bdd-8108-48f0-9377-c41891614051/ENCFF608CTR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF628ZJC bam bam alignments dm3 ENCSR826JGA Control ChIP-seq /fly-donors/ENCDO190QEL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31070/'], '@type': ['Target', 'Item'], 'name': 'CG11398-dmelanogaster', 'label': 'CG11398', '@id': '/targets/CG11398-dmelanogaster/', 'title': 'CG11398 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '88f6ba32-c154-4550-aa3f-c6ebac3641aa', 'status': 'released'} dm3 X 1094778 1119679 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF608CTR/ 686955529 Kevin White, UChicago 088110dfd995fcbe3ce0ad5d9be7836b https://www.encodeproject.org/files/ENCFF628ZJC/@@download/ENCFF628ZJC.bam released s3://encode-public/2015/08/03/345e7ca7-1853-4430-aa8c-8271748b2d0a/ENCFF628ZJC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF726GVT bigWig bigWig signal of unique reads dm3 ENCSR826JGA Control ChIP-seq /fly-donors/ENCDO190QEL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31070/'], '@type': ['Target', 'Item'], 'name': 'CG11398-dmelanogaster', 'label': 'CG11398', '@id': '/targets/CG11398-dmelanogaster/', 'title': 'CG11398 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '88f6ba32-c154-4550-aa3f-c6ebac3641aa', 'status': 'released'} dm3 X 1094778 1119679 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF628ZJC/ 15307049 Kevin White, UChicago 152b09c2e73ba0d629562943f502c823 https://www.encodeproject.org/files/ENCFF726GVT/@@download/ENCFF726GVT.bigWig released s3://encode-public/2015/10/06/7c7056d8-49f8-4da2-af57-0e58cddf18a8/ENCFF726GVT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF382UUB bigWig bigWig read-depth normalized signal dm3 ENCSR826JGA Control ChIP-seq /fly-donors/ENCDO190QEL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31070/'], '@type': ['Target', 'Item'], 'name': 'CG11398-dmelanogaster', 'label': 'CG11398', '@id': '/targets/CG11398-dmelanogaster/', 'title': 'CG11398 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '88f6ba32-c154-4550-aa3f-c6ebac3641aa', 'status': 'released'} dm3 X 1094778 1119679 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF628ZJC/ 15343053 Kevin White, UChicago 164101f841f486bc5afa9366a3a463bf https://www.encodeproject.org/files/ENCFF382UUB/@@download/ENCFF382UUB.bigWig released s3://encode-public/2015/10/06/8c228296-2084-495b-bbd7-2b8b5cad6ddf/ENCFF382UUB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF865YCY bam bam alignments dm6 ENCSR826JGA Control ChIP-seq /fly-donors/ENCDO190QEL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31070/'], '@type': ['Target', 'Item'], 'name': 'CG11398-dmelanogaster', 'label': 'CG11398', '@id': '/targets/CG11398-dmelanogaster/', 'title': 'CG11398 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '88f6ba32-c154-4550-aa3f-c6ebac3641aa', 'status': 'released'} dm3 X 1094778 1119679 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF608CTR/ 684326750 Kevin White, UChicago 95f2cd5d0dceb1528b0ad1738d4bd5da https://www.encodeproject.org/files/ENCFF865YCY/@@download/ENCFF865YCY.bam released s3://encode-public/2016/04/20/af600d39-a247-4a32-bbdb-468452996d6c/ENCFF865YCY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF495PPC bigWig bigWig read-depth normalized signal dm6 ENCSR826JGA Control ChIP-seq /fly-donors/ENCDO190QEL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31070/'], '@type': ['Target', 'Item'], 'name': 'CG11398-dmelanogaster', 'label': 'CG11398', '@id': '/targets/CG11398-dmelanogaster/', 'title': 'CG11398 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '88f6ba32-c154-4550-aa3f-c6ebac3641aa', 'status': 'released'} dm3 X 1094778 1119679 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865YCY/ 17479666 Kevin White, UChicago ea8152014eda119ff9957ca4ae48334b https://www.encodeproject.org/files/ENCFF495PPC/@@download/ENCFF495PPC.bigWig released s3://encode-public/2016/06/21/c27d6846-145e-470d-953d-812702b73ab7/ENCFF495PPC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF230UWF bigWig bigWig signal of unique reads dm6 ENCSR826JGA Control ChIP-seq /fly-donors/ENCDO190QEL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31070/'], '@type': ['Target', 'Item'], 'name': 'CG11398-dmelanogaster', 'label': 'CG11398', '@id': '/targets/CG11398-dmelanogaster/', 'title': 'CG11398 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '88f6ba32-c154-4550-aa3f-c6ebac3641aa', 'status': 'released'} dm3 X 1094778 1119679 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865YCY/ 17434173 Kevin White, UChicago 9253190ece5333e2b4ada966ce049487 https://www.encodeproject.org/files/ENCFF230UWF/@@download/ENCFF230UWF.bigWig released s3://encode-public/2016/06/21/9da09c69-e22b-4009-9ec1-57becfa54ebe/ENCFF230UWF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF588RZR fastq fastq reads ENCSR371KOI Control ChIP-seq /fly-donors/ENCDO043YLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43162/'], '@type': ['Target', 'Item'], 'name': 'gro-dmelanogaster', 'label': 'gro', '@id': '/targets/gro-dmelanogaster/', 'title': 'gro (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '7d34aea4-8564-48d8-a854-2402cfc82066', 'status': 'released'} dm3 3R 21863529 21882829 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 509791309 Kevin White, UChicago 37eb8cf3e06960fa971be24640f9f2c0 https://www.encodeproject.org/files/ENCFF588RZR/@@download/ENCFF588RZR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/9d1db57f-c511-4ae9-88fe-6e6875d468d0/ENCFF588RZR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF824YSW bam bam alignments dm3 ENCSR371KOI Control ChIP-seq /fly-donors/ENCDO043YLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43162/'], '@type': ['Target', 'Item'], 'name': 'gro-dmelanogaster', 'label': 'gro', '@id': '/targets/gro-dmelanogaster/', 'title': 'gro (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '7d34aea4-8564-48d8-a854-2402cfc82066', 'status': 'released'} dm3 3R 21863529 21882829 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF588RZR/ 753225108 Kevin White, UChicago 34238b333cee345c35feaf249e35653d https://www.encodeproject.org/files/ENCFF824YSW/@@download/ENCFF824YSW.bam released s3://encode-public/2015/08/05/12b606a0-87d2-4042-a54e-246a22e5591d/ENCFF824YSW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF951GGL bigWig bigWig read-depth normalized signal dm3 ENCSR371KOI Control ChIP-seq /fly-donors/ENCDO043YLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43162/'], '@type': ['Target', 'Item'], 'name': 'gro-dmelanogaster', 'label': 'gro', '@id': '/targets/gro-dmelanogaster/', 'title': 'gro (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '7d34aea4-8564-48d8-a854-2402cfc82066', 'status': 'released'} dm3 3R 21863529 21882829 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF824YSW/ 15481761 Kevin White, UChicago 277a17b4dc41943ba7a3f8075c9a39ac https://www.encodeproject.org/files/ENCFF951GGL/@@download/ENCFF951GGL.bigWig released s3://encode-public/2015/10/05/2a465ddc-6e72-4a09-933e-49bdab10d2aa/ENCFF951GGL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF701KBP bigWig bigWig signal of unique reads dm3 ENCSR371KOI Control ChIP-seq /fly-donors/ENCDO043YLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43162/'], '@type': ['Target', 'Item'], 'name': 'gro-dmelanogaster', 'label': 'gro', '@id': '/targets/gro-dmelanogaster/', 'title': 'gro (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '7d34aea4-8564-48d8-a854-2402cfc82066', 'status': 'released'} dm3 3R 21863529 21882829 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF824YSW/ 15426013 Kevin White, UChicago bd94c070925ac9ebf5a2f8506fb3659f https://www.encodeproject.org/files/ENCFF701KBP/@@download/ENCFF701KBP.bigWig released s3://encode-public/2015/10/05/6ed5ea1e-ecfc-42e5-83f1-364c44cef468/ENCFF701KBP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF325CSU bam bam alignments dm6 ENCSR371KOI Control ChIP-seq /fly-donors/ENCDO043YLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43162/'], '@type': ['Target', 'Item'], 'name': 'gro-dmelanogaster', 'label': 'gro', '@id': '/targets/gro-dmelanogaster/', 'title': 'gro (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '7d34aea4-8564-48d8-a854-2402cfc82066', 'status': 'released'} dm3 3R 21863529 21882829 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF588RZR/ 750691558 Kevin White, UChicago abca96d8d5bec581338baad2c6ec0b2e https://www.encodeproject.org/files/ENCFF325CSU/@@download/ENCFF325CSU.bam released s3://encode-public/2016/04/21/b96dd159-46c6-4840-aa27-8f563d55850f/ENCFF325CSU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF311NGW bigWig bigWig read-depth normalized signal dm6 ENCSR371KOI Control ChIP-seq /fly-donors/ENCDO043YLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43162/'], '@type': ['Target', 'Item'], 'name': 'gro-dmelanogaster', 'label': 'gro', '@id': '/targets/gro-dmelanogaster/', 'title': 'gro (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '7d34aea4-8564-48d8-a854-2402cfc82066', 'status': 'released'} dm3 3R 21863529 21882829 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF325CSU/ 17602966 Kevin White, UChicago 01b8b1fa8e4acf6263e46cab34a69bd0 https://www.encodeproject.org/files/ENCFF311NGW/@@download/ENCFF311NGW.bigWig released s3://encode-public/2016/06/20/c15c1d4d-7254-4e0a-8bad-c1fabc58947e/ENCFF311NGW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF173TKQ bigWig bigWig signal of unique reads dm6 ENCSR371KOI Control ChIP-seq /fly-donors/ENCDO043YLM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43162/'], '@type': ['Target', 'Item'], 'name': 'gro-dmelanogaster', 'label': 'gro', '@id': '/targets/gro-dmelanogaster/', 'title': 'gro (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '7d34aea4-8564-48d8-a854-2402cfc82066', 'status': 'released'} dm3 3R 21863529 21882829 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF325CSU/ 17546923 Kevin White, UChicago 7862c7d4873321c5afa78098c9151af6 https://www.encodeproject.org/files/ENCFF173TKQ/@@download/ENCFF173TKQ.bigWig released s3://encode-public/2016/06/20/6249b094-6700-4a89-ab75-75949b8dba03/ENCFF173TKQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF890PKM fastq fastq reads ENCSR964EHG Control ChIP-seq /fly-donors/ENCDO982AIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39419/'], '@type': ['Target', 'Item'], 'name': 'eyg-dmelanogaster', 'label': 'eyg', '@id': '/targets/eyg-dmelanogaster/', 'title': 'eyg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f485aaa3-6b73-4e76-af1f-83e9095d3182', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 340487281 Kevin White, UChicago 10d78534746f42a2bc76f288733d48fc https://www.encodeproject.org/files/ENCFF890PKM/@@download/ENCFF890PKM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/e6c3a6dc-20d7-404a-bd2f-74a99922f191/ENCFF890PKM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF397XGL bam bam alignments dm3 ENCSR964EHG Control ChIP-seq /fly-donors/ENCDO982AIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39419/'], '@type': ['Target', 'Item'], 'name': 'eyg-dmelanogaster', 'label': 'eyg', '@id': '/targets/eyg-dmelanogaster/', 'title': 'eyg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f485aaa3-6b73-4e76-af1f-83e9095d3182', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF890PKM/ 502858723 Kevin White, UChicago 43e6a828a415e40b66935f3fae06187c https://www.encodeproject.org/files/ENCFF397XGL/@@download/ENCFF397XGL.bam released s3://encode-public/2015/08/05/2b88f117-40f5-4ac2-a733-ce118386f9ac/ENCFF397XGL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF244EEG bigWig bigWig signal of unique reads dm3 ENCSR964EHG Control ChIP-seq /fly-donors/ENCDO982AIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39419/'], '@type': ['Target', 'Item'], 'name': 'eyg-dmelanogaster', 'label': 'eyg', '@id': '/targets/eyg-dmelanogaster/', 'title': 'eyg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f485aaa3-6b73-4e76-af1f-83e9095d3182', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF397XGL/ 15273896 Kevin White, UChicago c19db515486937a1fab9b3ce221f52e9 https://www.encodeproject.org/files/ENCFF244EEG/@@download/ENCFF244EEG.bigWig released s3://encode-public/2015/10/07/ec14cc8b-0346-437d-aea3-1c9fd45d6523/ENCFF244EEG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF113KXP bigWig bigWig read-depth normalized signal dm3 ENCSR964EHG Control ChIP-seq /fly-donors/ENCDO982AIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39419/'], '@type': ['Target', 'Item'], 'name': 'eyg-dmelanogaster', 'label': 'eyg', '@id': '/targets/eyg-dmelanogaster/', 'title': 'eyg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f485aaa3-6b73-4e76-af1f-83e9095d3182', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF397XGL/ 15194355 Kevin White, UChicago 4b88bb47f62d5ed468798fbb5713bbb0 https://www.encodeproject.org/files/ENCFF113KXP/@@download/ENCFF113KXP.bigWig released s3://encode-public/2015/10/07/adb1df76-ea60-47b9-8ab5-c4558c744ada/ENCFF113KXP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF324AYR bam bam alignments dm6 ENCSR964EHG Control ChIP-seq /fly-donors/ENCDO982AIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39419/'], '@type': ['Target', 'Item'], 'name': 'eyg-dmelanogaster', 'label': 'eyg', '@id': '/targets/eyg-dmelanogaster/', 'title': 'eyg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f485aaa3-6b73-4e76-af1f-83e9095d3182', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF890PKM/ 501311025 Kevin White, UChicago d9385b84adcff5ffc082561c4e2d167b https://www.encodeproject.org/files/ENCFF324AYR/@@download/ENCFF324AYR.bam released s3://encode-public/2016/04/21/769fee2e-d1e2-4abc-a5b6-1033e164c091/ENCFF324AYR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF906XGN bigWig bigWig signal of unique reads dm6 ENCSR964EHG Control ChIP-seq /fly-donors/ENCDO982AIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39419/'], '@type': ['Target', 'Item'], 'name': 'eyg-dmelanogaster', 'label': 'eyg', '@id': '/targets/eyg-dmelanogaster/', 'title': 'eyg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f485aaa3-6b73-4e76-af1f-83e9095d3182', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF324AYR/ 17389619 Kevin White, UChicago b08acd275d0e2f28c35a55703ea44ab7 https://www.encodeproject.org/files/ENCFF906XGN/@@download/ENCFF906XGN.bigWig released s3://encode-public/2016/06/20/c60d8fdd-67fd-4824-b31c-379e6fbc8d39/ENCFF906XGN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF044RUN bigWig bigWig read-depth normalized signal dm6 ENCSR964EHG Control ChIP-seq /fly-donors/ENCDO982AIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39419/'], '@type': ['Target', 'Item'], 'name': 'eyg-dmelanogaster', 'label': 'eyg', '@id': '/targets/eyg-dmelanogaster/', 'title': 'eyg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f485aaa3-6b73-4e76-af1f-83e9095d3182', 'status': 'released'} dm3 3L 12395768 12478062 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF324AYR/ 17273926 Kevin White, UChicago d7f7f723cdc2ce88fbb5f47a46e98f24 https://www.encodeproject.org/files/ENCFF044RUN/@@download/ENCFF044RUN.bigWig released s3://encode-public/2016/06/20/e77f62db-74e7-439e-96cd-d8c7595de198/ENCFF044RUN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001FEJ bam bam alignments hg19 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001FFI/ 724484610 John Stamatoyannopoulos, UW 91bacab592eb8d177207cac81f66f660 https://www.encodeproject.org/files/ENCFF001FEJ/@@download/ENCFF001FEJ.bam archived s3://encode-public/2011/06/25/49a269bf-947c-4320-889d-6be2b44e9e4a/ENCFF001FEJ.bam Lab custom hg19 archived low read depth, low read length ENCFF001FEV bigWig bigWig raw signal hg19 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001FEJ/ 168325866 John Stamatoyannopoulos, UW ddc4d0c5b85c5106eb84f9935d6eedc5 https://www.encodeproject.org/files/ENCFF001FEV/@@download/ENCFF001FEV.bigWig archived s3://encode-public/2011/06/25/2353d689-fa92-438e-908b-f3b1665d2ba8/ENCFF001FEV.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001FFI fastq fastq reads ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 756788300 John Stamatoyannopoulos, UW 47f690c588f0e6c14a30f5971b60e58c https://www.encodeproject.org/files/ENCFF001FFI/@@download/ENCFF001FFI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/efd94762-41e1-4fa9-b503-16270e367189/ENCFF001FFI.fastq.gz low read depth, low read length ENCFF837HRZ bam bam unfiltered alignments GRCh38 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001FFI/ 920623237 ENCODE Processing Pipeline dd9499b00670f416a54c9b610c684b3f https://www.encodeproject.org/files/ENCFF837HRZ/@@download/ENCFF837HRZ.bam released s3://encode-public/2016/08/09/53bf90db-f7e8-48b7-966b-9fe51e314885/ENCFF837HRZ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF043XTH bam bam alignments GRCh38 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001FFI/ 675556023 ENCODE Processing Pipeline 2e4262e36cff4752b0ba9ef56769fa35 https://www.encodeproject.org/files/ENCFF043XTH/@@download/ENCFF043XTH.bam released s3://encode-public/2016/08/09/d8e7b955-cea6-4810-832f-dd968ba0b55c/ENCFF043XTH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF683ZRU bam bam unfiltered alignments hg19 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001FFI/ 916640944 ENCODE Processing Pipeline dcbfe0058556b6eaf6d6894caeb65a0d https://www.encodeproject.org/files/ENCFF683ZRU/@@download/ENCFF683ZRU.bam released s3://encode-public/2016/11/13/b9ec11a1-04a4-421c-8409-7007232e3bb7/ENCFF683ZRU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF615SNK bam bam alignments hg19 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001FFI/ 675716491 ENCODE Processing Pipeline 6dc76846cb10e90b5055ca2b0eff809f https://www.encodeproject.org/files/ENCFF615SNK/@@download/ENCFF615SNK.bam released s3://encode-public/2016/11/13/b7c09d49-7695-4aed-bed8-97dd77afd37f/ENCFF615SNK.bam ENCODE3 hg19 archived low read depth, low read length ENCFF797YPX bam bam alignments GRCh38 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001FFI/, /files/ENCFF110MCL/ 735719133 ENCODE Processing Pipeline b7e82bd94dbd233b731f084ea19f4c21 https://www.encodeproject.org/files/ENCFF797YPX/@@download/ENCFF797YPX.bam released s3://encode-public/2020/09/03/7f915429-0eec-403a-a536-9bdca71b51e8/ENCFF797YPX.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF437ZYJ bam bam unfiltered alignments GRCh38 ENCSR000DSQ Control ChIP-seq /human-donors/ENCDO221AAA/ EFO:0005904 H7 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001FFI/, /files/ENCFF110MCL/ 901496099 ENCODE Processing Pipeline 402f7ae30bad0162c7905f431e1d6ab7 https://www.encodeproject.org/files/ENCFF437ZYJ/@@download/ENCFF437ZYJ.bam released s3://encode-public/2020/09/03/bc57901d-829b-42fa-b14b-d6698b8aa14a/ENCFF437ZYJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001ZUT fastq fastq reads ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 698136194 Bing Ren, UCSD 20cfb93ec5ecaaa958b9c1d5041221f5 SRA:SRR3652455 https://www.encodeproject.org/files/ENCFF001ZUT/@@download/ENCFF001ZUT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/0038a036-d8e6-48fd-9fb0-09040b9b7f50/ENCFF001ZUT.fastq.gz low read depth, low read length ENCFF001ZUU fastq fastq reads ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 683514841 Bing Ren, UCSD 643f59605db97d367f6b211999c0aa0b SRA:SRR3652454 https://www.encodeproject.org/files/ENCFF001ZUU/@@download/ENCFF001ZUU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/9a9d1cf1-0d6c-4ce5-bb87-0063637aa753/ENCFF001ZUU.fastq.gz low read depth, low read length ENCFF118MPZ bam bam unfiltered alignments mm10-minimal ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF001ZUT/, /files/ENCFF806TVZ/ 917642444 ENCODE Processing Pipeline 9733162e0736bc0e0da99c47ecbb94a8 https://www.encodeproject.org/files/ENCFF118MPZ/@@download/ENCFF118MPZ.bam archived s3://encode-public/2015/02/09/9555caba-893c-439f-847d-f834415e87b8/ENCFF118MPZ.bam low read depth, low read length ENCFF526SBC bam bam unfiltered alignments mm10-minimal ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZUU/, /files/ENCFF806TVZ/ 893476580 ENCODE Processing Pipeline 5c0529e2eb2a4d9f60865feca37f6a5d https://www.encodeproject.org/files/ENCFF526SBC/@@download/ENCFF526SBC.bam archived s3://encode-public/2015/02/09/82e168b8-2109-4640-9bb1-84a58bce4289/ENCFF526SBC.bam low read depth, low read length ENCFF841RBB bam bam alignments mm10-minimal ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZUU/, /files/ENCFF806TVZ/ 562336463 ENCODE Processing Pipeline 9c14c6bf7ee9aa4b84bde66da7f93abe https://www.encodeproject.org/files/ENCFF841RBB/@@download/ENCFF841RBB.bam archived s3://encode-public/2015/03/11/daee65e8-63fb-4188-accb-a1db2395e13a/ENCFF841RBB.bam low read depth, low read length ENCFF807GND bam bam alignments mm10-minimal ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF001ZUT/, /files/ENCFF806TVZ/ 582271531 ENCODE Processing Pipeline 9b774f5e28ea2d30dd054facc2b04deb https://www.encodeproject.org/files/ENCFF807GND/@@download/ENCFF807GND.bam archived s3://encode-public/2015/03/11/a9507dda-b3e6-467c-9657-da29ea0bedfa/ENCFF807GND.bam low read depth, low read length ENCFF681ZOI bam bam unfiltered alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUT/ 919000901 ENCODE Processing Pipeline 2102afc02e6f58d62817cc8d30543f39 https://www.encodeproject.org/files/ENCFF681ZOI/@@download/ENCFF681ZOI.bam released s3://encode-public/2016/05/20/873592b4-742a-4613-b512-be2ad4b28652/ENCFF681ZOI.bam ENCODE3 mm10 archived low read depth, low read length ENCFF010EXO bam bam alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUT/ 582067980 ENCODE Processing Pipeline 052c0fc878ce9af46a372270fbe3fd9d https://www.encodeproject.org/files/ENCFF010EXO/@@download/ENCFF010EXO.bam released s3://encode-public/2016/05/20/d4f49a87-5143-43ef-89f9-3030e71c627c/ENCFF010EXO.bam ENCODE3 mm10 archived low read depth, low read length ENCFF804FRH bam bam alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZUU/, /files/ENCFF018NEO/ 562130177 ENCODE Processing Pipeline 9e096248db434185938d303c4f81b11c https://www.encodeproject.org/files/ENCFF804FRH/@@download/ENCFF804FRH.bam released s3://encode-public/2016/05/20/295fbe00-0699-4858-aff5-c44f3b0e41ea/ENCFF804FRH.bam ENCODE3 mm10 archived low read depth, low read length ENCFF616JRC bam bam unfiltered alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZUU/, /files/ENCFF018NEO/ 894784172 ENCODE Processing Pipeline f478e819a9d0af51890993f6e88d8f2d https://www.encodeproject.org/files/ENCFF616JRC/@@download/ENCFF616JRC.bam released s3://encode-public/2016/05/20/643eefec-d4bf-4380-857a-896523089fd8/ENCFF616JRC.bam ENCODE3 mm10 archived low read depth, low read length ENCFF083EUM bam bam unfiltered alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUU/ 870331115 ENCODE Processing Pipeline aff524ec4d6cd32a53b7e44c138c3b13 https://www.encodeproject.org/files/ENCFF083EUM/@@download/ENCFF083EUM.bam released s3://encode-public/2020/10/08/e5d619fa-531a-42fb-9066-7cee63289235/ENCFF083EUM.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF209XZA bam bam alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUT/ 624785784 ENCODE Processing Pipeline 9003a1859e8d073872ef57aa9c48d634 https://www.encodeproject.org/files/ENCFF209XZA/@@download/ENCFF209XZA.bam released s3://encode-public/2020/10/08/2abeac27-a594-4119-a60f-be6d66f8cbe6/ENCFF209XZA.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF290OKP bam bam alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUU/ 603014058 ENCODE Processing Pipeline 84a57f9bcecd2f4fa55de348b8a934c0 https://www.encodeproject.org/files/ENCFF290OKP/@@download/ENCFF290OKP.bam released s3://encode-public/2020/10/08/a381975b-8839-4931-8aa0-015d2d66acfc/ENCFF290OKP.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF197JRZ bam bam unfiltered alignments mm10 ENCSR573MJR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUT/ 894425914 ENCODE Processing Pipeline b3082b4ac6c5a0c9fa2ffd23f554e453 https://www.encodeproject.org/files/ENCFF197JRZ/@@download/ENCFF197JRZ.bam released s3://encode-public/2020/10/08/8a16a3f3-edae-429e-b481-80413bfd2490/ENCFF197JRZ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF001KJT bam bam alignments mm9 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KKE/ 249685015 Bing Ren, UCSD 8ba73c5e55a4ce67bd267923e06ff357 https://www.encodeproject.org/files/ENCFF001KJT/@@download/ENCFF001KJT.bam archived s3://encode-public/2011/12/23/8faae5be-6dd3-4bf6-b834-defe03ccf7ac/ENCFF001KJT.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KJW bam bam alignments mm9 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KKF/ 714596014 Bing Ren, UCSD f5ab511de3994755b4483281c886b2e0 https://www.encodeproject.org/files/ENCFF001KJW/@@download/ENCFF001KJW.bam archived s3://encode-public/2011/12/23/683a6ad2-0d57-4756-aaae-4cdc72806cbc/ENCFF001KJW.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KJX bigWig bigWig signal mm9 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KJT/, /files/ENCFF001KJW/ 66423319 Bing Ren, UCSD fe038f88331af567cb3ccf455a760d62 https://www.encodeproject.org/files/ENCFF001KJX/@@download/ENCFF001KJX.bigWig archived s3://encode-public/2011/12/23/4694625b-5d3e-4cd3-9c33-b22f01c10185/ENCFF001KJX.bigWig Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KKE fastq fastq reads ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 single-ended 937215362 Bing Ren, UCSD 5eb19b262cb54b7a3330b6c77a094776 https://www.encodeproject.org/files/ENCFF001KKE/@@download/ENCFF001KKE.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/87ac1e23-fac1-487b-8371-522e33d8920d/ENCFF001KKE.fastq.gz low read depth, low read length insufficient read depth ENCFF001KKF fastq fastq reads ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 single-ended 788764755 Bing Ren, UCSD 6b61cba3c2051eaeee54db4c3516f294 https://www.encodeproject.org/files/ENCFF001KKF/@@download/ENCFF001KKF.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/f0941bfc-70c3-4f53-81a7-c7a3beda99c5/ENCFF001KKF.fastq.gz low read depth, low read length insufficient read depth ENCFF238YZX bam bam unfiltered alignments mm10-minimal ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001KKE/ 982545277 J. Michael Cherry, Stanford dccb0602bbe717a7f43d2b30fbdc10bb https://www.encodeproject.org/files/ENCFF238YZX/@@download/ENCFF238YZX.bam archived s3://encode-public/2015/02/04/406012ea-5c23-4dce-89e3-1ffe22bdab93/ENCFF238YZX.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF915IJO bam bam unfiltered alignments mm10-minimal ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KKF/, /files/ENCFF806TVZ/ 922238060 J. Michael Cherry, Stanford 5408add6b3e200b77b106eaa5e9d78db https://www.encodeproject.org/files/ENCFF915IJO/@@download/ENCFF915IJO.bam archived s3://encode-public/2015/02/04/a09fb69b-a6a5-4993-895a-4e422b937a51/ENCFF915IJO.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF862XUW bam bam alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KKE/ 273247827 ENCODE Processing Pipeline dd8c96a0d14db48bb9fa2fbc2bf50be1 https://www.encodeproject.org/files/ENCFF862XUW/@@download/ENCFF862XUW.bam released s3://encode-public/2016/04/28/c11e09bd-87ce-4202-999f-637d1435cfd8/ENCFF862XUW.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF396FNQ bam bam alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KKF/, /files/ENCFF018NEO/ 606097430 ENCODE Processing Pipeline bb3f94b827676d7fbfd24ef51636b121 https://www.encodeproject.org/files/ENCFF396FNQ/@@download/ENCFF396FNQ.bam released s3://encode-public/2016/04/28/4ff2c058-b3ff-4999-955f-bfe6c02eec6c/ENCFF396FNQ.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF168ECW bam bam unfiltered alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KKE/ 983576076 ENCODE Processing Pipeline c5adde43f6f7d91068d74c9e02d93cca https://www.encodeproject.org/files/ENCFF168ECW/@@download/ENCFF168ECW.bam released s3://encode-public/2016/07/06/c68ec9c9-b668-46a0-b4b0-7a6190c41086/ENCFF168ECW.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF028SNW bam bam unfiltered alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KKF/, /files/ENCFF018NEO/ 922809992 ENCODE Processing Pipeline 2ef609fb1f6b4b568ee1b318e97d68cc https://www.encodeproject.org/files/ENCFF028SNW/@@download/ENCFF028SNW.bam released s3://encode-public/2016/07/06/46115944-73fc-46f7-9a23-d3eaafa6955e/ENCFF028SNW.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF638RKX bam bam unfiltered alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KKE/, /files/ENCFF309GLL/ 972299999 ENCODE Processing Pipeline 497801ca6b92c3b67acdecfbb95ba0f0 https://www.encodeproject.org/files/ENCFF638RKX/@@download/ENCFF638RKX.bam released s3://encode-public/2020/10/12/cb6efc0c-1d42-40fd-bd1c-bc2c384568ed/ENCFF638RKX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF796LVS bam bam alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KKE/, /files/ENCFF309GLL/ 291398667 ENCODE Processing Pipeline 446f0ef05edcc285e04b8da685281be9 https://www.encodeproject.org/files/ENCFF796LVS/@@download/ENCFF796LVS.bam released s3://encode-public/2020/10/12/24689ee1-f9a6-4790-94cc-d29851c29294/ENCFF796LVS.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF330XTS bam bam unfiltered alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 33 /files/ENCFF001KKE/, /files/ENCFF309GLL/ 929174818 ENCODE Processing Pipeline 6a30d685633d5af9a6f5bbcab56e5c16 https://www.encodeproject.org/files/ENCFF330XTS/@@download/ENCFF330XTS.bam released s3://encode-public/2020/10/12/afa268c7-2fb7-49a8-bc36-cf5cf54374a8/ENCFF330XTS.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF137NNR bam bam unfiltered alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 33 /files/ENCFF309GLL/, /files/ENCFF001KKF/ 867882587 ENCODE Processing Pipeline 25618ef51e9e4830b58f85197e2ac226 https://www.encodeproject.org/files/ENCFF137NNR/@@download/ENCFF137NNR.bam released s3://encode-public/2020/10/12/0f758953-c19f-48e3-8240-809d615a5db3/ENCFF137NNR.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF725LXC bam bam alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 1 1_1 33 /files/ENCFF001KKE/, /files/ENCFF309GLL/ 296461166 ENCODE Processing Pipeline c6a44c331084de078da10d394a09de18 https://www.encodeproject.org/files/ENCFF725LXC/@@download/ENCFF725LXC.bam released s3://encode-public/2020/10/12/625db53b-c66e-4ce3-9612-2fabba993c98/ENCFF725LXC.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF046ZNJ bam bam alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 33 /files/ENCFF309GLL/, /files/ENCFF001KKF/ 620156673 ENCODE Processing Pipeline c2be8682b1f343a18b5d4cb0220fda8f https://www.encodeproject.org/files/ENCFF046ZNJ/@@download/ENCFF046ZNJ.bam released s3://encode-public/2020/10/12/3d00765d-810d-4e49-84dc-d8c5c9667b7b/ENCFF046ZNJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF553PEF bam bam unfiltered alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KKF/, /files/ENCFF309GLL/ 909701633 ENCODE Processing Pipeline 44414d67d2116c500712fe3e6add77f2 https://www.encodeproject.org/files/ENCFF553PEF/@@download/ENCFF553PEF.bam released s3://encode-public/2020/10/12/3b459868-f6d3-40e0-a9fb-7830b45c8a15/ENCFF553PEF.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF429ZAT bam bam alignments mm10 ENCSR000CAW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2011-07-22 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KKF/, /files/ENCFF309GLL/ 648317333 ENCODE Processing Pipeline 5b07234c5ab038e99de5a616291ba39b https://www.encodeproject.org/files/ENCFF429ZAT/@@download/ENCFF429ZAT.bam released s3://encode-public/2020/10/12/fe74a2d1-03a6-46cd-8400-684838efe818/ENCFF429ZAT.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF002APW fastq fastq reads ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2113199372 Bing Ren, UCSD 02d8a70f08ebd574b1ded8350b253fcf SRA:SRR3653221 https://www.encodeproject.org/files/ENCFF002APW/@@download/ENCFF002APW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/75959f65-a56d-4754-806c-ca088b00dd44/ENCFF002APW.fastq.gz ENCFF002APZ fastq fastq reads ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2107731784 Bing Ren, UCSD 3fa3a3aa893eb8131804ab7208e1c4f5 SRA:SRR3653220 https://www.encodeproject.org/files/ENCFF002APZ/@@download/ENCFF002APZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/95a497ea-646c-408c-b8a1-7f1fab14ea25/ENCFF002APZ.fastq.gz ENCFF220QZF bam bam unfiltered alignments mm10-minimal ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002APZ/ 2407710428 ENCODE Processing Pipeline 3023a43f6b1a7ab353b507b66ebc6f9a https://www.encodeproject.org/files/ENCFF220QZF/@@download/ENCFF220QZF.bam archived s3://encode-public/2015/02/09/fb06890c-a131-4298-8366-1f67e47cb8bc/ENCFF220QZF.bam ENCFF474YCJ bam bam unfiltered alignments mm10-minimal ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002APW/ 2406772111 ENCODE Processing Pipeline b6d74104bdc8ff06de20622de12bbf32 https://www.encodeproject.org/files/ENCFF474YCJ/@@download/ENCFF474YCJ.bam archived s3://encode-public/2015/02/09/bfbf3ec1-59e0-4a88-8095-8194e99d32b2/ENCFF474YCJ.bam ENCFF716BBX bam bam alignments mm10-minimal ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002APW/ 1653871831 ENCODE Processing Pipeline 4f56acf58c903d129e7e0e039d2ee0e3 https://www.encodeproject.org/files/ENCFF716BBX/@@download/ENCFF716BBX.bam archived s3://encode-public/2015/05/24/3d0a1d76-043c-4fe8-be3d-88c14d41faf7/ENCFF716BBX.bam ENCFF417WKH bam bam alignments mm10-minimal ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002APZ/ 1698652333 ENCODE Processing Pipeline 37f7a2b39a9380b89227f11caf526db1 https://www.encodeproject.org/files/ENCFF417WKH/@@download/ENCFF417WKH.bam archived s3://encode-public/2015/05/24/dc3a7dbd-c45e-43c9-a80f-87a9f0f0a50c/ENCFF417WKH.bam ENCFF088QFZ bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002APW/ 2409378357 ENCODE Processing Pipeline 0b38f36b63706e2af584245f02b3993c https://www.encodeproject.org/files/ENCFF088QFZ/@@download/ENCFF088QFZ.bam released s3://encode-public/2016/05/20/cfa67e93-dda9-4be6-8cf8-bfafef0f5034/ENCFF088QFZ.bam ENCODE3 mm10 archived ENCFF123NRZ bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002APZ/ 2410202020 ENCODE Processing Pipeline 0d5ae5ebc2d86fe2f5bbb9f1a53f5808 https://www.encodeproject.org/files/ENCFF123NRZ/@@download/ENCFF123NRZ.bam released s3://encode-public/2016/05/20/ede843dc-b968-4f34-9408-f0812c2f9f20/ENCFF123NRZ.bam ENCODE3 mm10 archived ENCFF416UQK bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002APW/ 1653374276 ENCODE Processing Pipeline 3ed0f34ac34f9f4b5539f3cff15a0cd4 https://www.encodeproject.org/files/ENCFF416UQK/@@download/ENCFF416UQK.bam released s3://encode-public/2016/05/20/33afb532-a3d3-47b3-a94c-7ef66372c100/ENCFF416UQK.bam ENCODE3 mm10 archived ENCFF271IBK bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002APZ/ 1698158186 ENCODE Processing Pipeline 08ff47e5ca3ae1ac912316fb0cc09b34 https://www.encodeproject.org/files/ENCFF271IBK/@@download/ENCFF271IBK.bam released s3://encode-public/2016/05/20/7e848fe5-2fc0-49b2-820a-56943f83c75e/ENCFF271IBK.bam ENCODE3 mm10 archived ENCFF034RBT bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002APW/ 1953202057 ENCODE Processing Pipeline defea8b585406070ece0c8b8a2383e02 https://www.encodeproject.org/files/ENCFF034RBT/@@download/ENCFF034RBT.bam released s3://encode-public/2016/10/03/46c3ca01-11bf-4e66-bcfe-b096bdc37890/ENCFF034RBT.bam ENCODE3 mm10 archived ENCFF750YDU bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002APZ/ 1954091122 ENCODE Processing Pipeline c3fe6aab5199763f6b02fc9fdf225325 https://www.encodeproject.org/files/ENCFF750YDU/@@download/ENCFF750YDU.bam released s3://encode-public/2016/10/03/9010d890-d739-409d-8675-5851b1405e1e/ENCFF750YDU.bam ENCODE3 mm10 archived ENCFF963FIQ bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002APZ/ 1285158067 ENCODE Processing Pipeline bcd0cee70a6f11c82a7bcc0031c7669e https://www.encodeproject.org/files/ENCFF963FIQ/@@download/ENCFF963FIQ.bam released s3://encode-public/2016/10/03/f3e2d60b-0756-49f7-9da0-1d47eb39e6c8/ENCFF963FIQ.bam ENCODE3 mm10 archived ENCFF504TWB bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002APW/ 1250485614 ENCODE Processing Pipeline 659265e0421c5199ec399d2225c3cf7a https://www.encodeproject.org/files/ENCFF504TWB/@@download/ENCFF504TWB.bam released s3://encode-public/2016/10/03/38d144b9-49da-4654-b167-743972e4f0cc/ENCFF504TWB.bam ENCODE3 mm10 archived ENCFF753BDH bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002APZ/, /files/ENCFF309GLL/ 1904613672 ENCODE Processing Pipeline b0772130d1ddae57a10d621f3e02846a https://www.encodeproject.org/files/ENCFF753BDH/@@download/ENCFF753BDH.bam released s3://encode-public/2020/10/10/da48898d-bd96-4e9c-8731-0b2ee4067f24/ENCFF753BDH.bam ENCODE4 v1.5.1 mm10 released ENCFF888NWX bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002APW/, /files/ENCFF309GLL/ 2364968155 ENCODE Processing Pipeline 7e86e0d3824f76129d1f66185e11b2a5 https://www.encodeproject.org/files/ENCFF888NWX/@@download/ENCFF888NWX.bam released s3://encode-public/2020/10/07/a2c3b9b2-248a-4e63-98eb-12dc985f8050/ENCFF888NWX.bam ENCODE4 v1.5.1 mm10 released ENCFF307EZW bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002APZ/, /files/ENCFF309GLL/ 2365624273 ENCODE Processing Pipeline de312747cdac2928ff1a314267511261 https://www.encodeproject.org/files/ENCFF307EZW/@@download/ENCFF307EZW.bam released s3://encode-public/2020/10/07/a0c54b5b-d7c7-4fda-bc2a-a884c1914a29/ENCFF307EZW.bam ENCODE4 v1.5.1 mm10 released ENCFF350RHC bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002APW/, /files/ENCFF309GLL/ 1709607922 ENCODE Processing Pipeline d31a825d0cf5f0e200a7b6e88adc2ab9 https://www.encodeproject.org/files/ENCFF350RHC/@@download/ENCFF350RHC.bam released s3://encode-public/2020/10/07/48d6fa05-e389-4ea1-9fe1-1dec49ccbfac/ENCFF350RHC.bam ENCODE4 v1.5.1 mm10 released ENCFF295VJN bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002APZ/, /files/ENCFF309GLL/ 1754030952 ENCODE Processing Pipeline 0a8105ca3ecade7f2c91eaacdb40e271 https://www.encodeproject.org/files/ENCFF295VJN/@@download/ENCFF295VJN.bam released s3://encode-public/2020/10/07/886bb3eb-ecae-40cd-b651-8b79d3f3550b/ENCFF295VJN.bam ENCODE4 v1.5.1 mm10 released ENCFF918RIM bam bam unfiltered alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APW/, /files/ENCFF309GLL/ 1903785365 ENCODE Processing Pipeline 83935aa50605f91a6f5d7a450ce2362c https://www.encodeproject.org/files/ENCFF918RIM/@@download/ENCFF918RIM.bam released s3://encode-public/2020/10/10/bafede3a-b20a-4d7f-b94c-3d9adcb431b8/ENCFF918RIM.bam ENCODE4 v1.5.1 mm10 released ENCFF806TLN bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APW/, /files/ENCFF309GLL/ 1346407054 ENCODE Processing Pipeline becb65cb5877545b7294a6e557ce00af https://www.encodeproject.org/files/ENCFF806TLN/@@download/ENCFF806TLN.bam released s3://encode-public/2020/10/10/0f43ab33-400f-4553-af22-25cfb4c6505a/ENCFF806TLN.bam ENCODE4 v1.5.1 mm10 released ENCFF745AQG bam bam alignments mm10 ENCSR896PWV Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002APZ/, /files/ENCFF309GLL/ 1382484831 ENCODE Processing Pipeline dbae15e1a98b2f32d26576ec906df2fa https://www.encodeproject.org/files/ENCFF745AQG/@@download/ENCFF745AQG.bam released s3://encode-public/2020/10/10/7dc3de17-026e-40c3-ae2c-43bca5343ba3/ENCFF745AQG.bam ENCODE4 v1.5.1 mm10 released ENCFF001MQP bigWig bigWig signal mm9 ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 2482098878 Ross Hardison, PennState ddff0dff2d668c75d48de8b00fa36197 https://www.encodeproject.org/files/ENCFF001MQP/@@download/ENCFF001MQP.bigWig archived s3://encode-public/2011/11/05/3b589e15-10d6-4328-b073-28e4299eeb2d/ENCFF001MQP.bigWig Lab custom mm9 archived low read length ENCFF001MQQ bam bam alignments mm9 ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MQW/ 1482373649 Ross Hardison, PennState ca4a75fab42da7c95b82e30b1178c055 https://www.encodeproject.org/files/ENCFF001MQQ/@@download/ENCFF001MQQ.bam archived s3://encode-public/2011/11/05/5fa9069d-aa5a-4005-9185-1949122d2b94/ENCFF001MQQ.bam Lab custom mm9 archived low read length ENCFF001MQW fastq fastq reads ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 single-ended 1204819618 Ross Hardison, PennState 1574fb40f631be9df8cb7435a06714d9 https://www.encodeproject.org/files/ENCFF001MQW/@@download/ENCFF001MQW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/d8c0cc7a-c50d-4435-83cc-d88a2051d7df/ENCFF001MQW.fastq.gz low read length ENCFF340EKR bam bam unfiltered alignments mm10-minimal ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MQW/, /files/ENCFF806TVZ/ 1561895903 J. Michael Cherry, Stanford d5c340d953978eceaaf8a08ce5df1c27 https://www.encodeproject.org/files/ENCFF340EKR/@@download/ENCFF340EKR.bam archived s3://encode-public/2015/02/04/013579d8-83b3-48a2-97a2-3110b8fdcd3a/ENCFF340EKR.bam ENCODE3 mm10-minimal archived low read length ENCFF948SVD bam bam alignments mm10-minimal ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MQW/, /files/ENCFF806TVZ/ 1165372740 J. Michael Cherry, Stanford 298ac148c99220b8c6f7e0788577e283 https://www.encodeproject.org/files/ENCFF948SVD/@@download/ENCFF948SVD.bam archived s3://encode-public/2015/05/23/c18a3573-e878-4dd5-bd56-8771867af94d/ENCFF948SVD.bam ENCODE3 mm10-minimal archived low read length ENCFF272TOF bam bam unfiltered alignments mm10 ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF018NEO/, /files/ENCFF001MQW/ 1563226616 ENCODE Processing Pipeline d6c803fec12b337a30844c7e6e53d1e7 https://www.encodeproject.org/files/ENCFF272TOF/@@download/ENCFF272TOF.bam released s3://encode-public/2016/10/26/8cac8601-acf9-47be-b1df-412f7d6be6bc/ENCFF272TOF.bam ENCODE3 mm10 archived low read length ENCFF911HXZ bam bam alignments mm10 ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF018NEO/, /files/ENCFF001MQW/ 1164889447 ENCODE Processing Pipeline 4e22bb30cdbae811670d42a8d598fa6e https://www.encodeproject.org/files/ENCFF911HXZ/@@download/ENCFF911HXZ.bam released s3://encode-public/2016/10/26/e06793c9-4382-473d-a221-2372e0152826/ENCFF911HXZ.bam ENCODE3 mm10 archived low read length ENCFF188ZSP bam bam unfiltered alignments mm10 ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MQW/, /files/ENCFF309GLL/ 1556431619 ENCODE Processing Pipeline bf080b4b305197fcd98ec01ec5dbb495 https://www.encodeproject.org/files/ENCFF188ZSP/@@download/ENCFF188ZSP.bam released s3://encode-public/2020/11/06/b7d8ccca-ad33-4fb4-89b6-e58b8f8ace7a/ENCFF188ZSP.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF429PWW bam bam alignments mm10 ENCSR000DGV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 14 hour DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MQW/, /files/ENCFF309GLL/ 1178538725 ENCODE Processing Pipeline cc61a6b6061dd5bab481fd5565efb510 https://www.encodeproject.org/files/ENCFF429PWW/@@download/ENCFF429PWW.bam released s3://encode-public/2020/11/06/a64d4215-e372-4e7c-b7f4-0f2211d5afda/ENCFF429PWW.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF015EJJ fastq fastq reads ENCSR132NXK Control ChIP-seq /fly-donors/ENCDO659QFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42110/'], '@type': ['Target', 'Item'], 'name': 'Hmx-dmelanogaster', 'label': 'Hmx', '@id': '/targets/Hmx-dmelanogaster/', 'title': 'Hmx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fe22be50-ab8f-4698-b3fe-48820f3f2eec', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 675583065 Kevin White, UChicago 8cec5cb545660618e381f4a2fbafffa8 https://www.encodeproject.org/files/ENCFF015EJJ/@@download/ENCFF015EJJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/b49bf924-4c71-4a42-81a5-ae94e519ba1f/ENCFF015EJJ.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF048THA bam bam alignments dm3 ENCSR132NXK Control ChIP-seq /fly-donors/ENCDO659QFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42110/'], '@type': ['Target', 'Item'], 'name': 'Hmx-dmelanogaster', 'label': 'Hmx', '@id': '/targets/Hmx-dmelanogaster/', 'title': 'Hmx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fe22be50-ab8f-4698-b3fe-48820f3f2eec', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF015EJJ/ 975435542 Kevin White, UChicago 03afd09cfbb0e8769a8eb6c3ba6e0dc3 https://www.encodeproject.org/files/ENCFF048THA/@@download/ENCFF048THA.bam released s3://encode-public/2015/08/05/0f69988c-b19a-431e-8094-e12bd15bcebe/ENCFF048THA.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF240DXP bigWig bigWig read-depth normalized signal dm3 ENCSR132NXK Control ChIP-seq /fly-donors/ENCDO659QFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42110/'], '@type': ['Target', 'Item'], 'name': 'Hmx-dmelanogaster', 'label': 'Hmx', '@id': '/targets/Hmx-dmelanogaster/', 'title': 'Hmx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fe22be50-ab8f-4698-b3fe-48820f3f2eec', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF048THA/ 15331462 Kevin White, UChicago 9e2291e162d05fc8b63104f09a9fef07 https://www.encodeproject.org/files/ENCFF240DXP/@@download/ENCFF240DXP.bigWig released s3://encode-public/2015/10/07/e0a1ec80-a74d-4ada-9cd6-30222dc2de54/ENCFF240DXP.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF426MSM bigWig bigWig signal of unique reads dm3 ENCSR132NXK Control ChIP-seq /fly-donors/ENCDO659QFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42110/'], '@type': ['Target', 'Item'], 'name': 'Hmx-dmelanogaster', 'label': 'Hmx', '@id': '/targets/Hmx-dmelanogaster/', 'title': 'Hmx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fe22be50-ab8f-4698-b3fe-48820f3f2eec', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF048THA/ 15310033 Kevin White, UChicago f0f1a7d419136ff6ad19d338d81564e0 https://www.encodeproject.org/files/ENCFF426MSM/@@download/ENCFF426MSM.bigWig released s3://encode-public/2015/10/07/436e169b-ce3a-43e5-ae25-022dbb4ef72e/ENCFF426MSM.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF034TXD bam bam alignments dm6 ENCSR132NXK Control ChIP-seq /fly-donors/ENCDO659QFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42110/'], '@type': ['Target', 'Item'], 'name': 'Hmx-dmelanogaster', 'label': 'Hmx', '@id': '/targets/Hmx-dmelanogaster/', 'title': 'Hmx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fe22be50-ab8f-4698-b3fe-48820f3f2eec', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF015EJJ/ 965827346 Kevin White, UChicago 3bc2ad29eb8defd0dbdafa6f682da26e https://www.encodeproject.org/files/ENCFF034TXD/@@download/ENCFF034TXD.bam released s3://encode-public/2016/04/21/7e8cd829-060d-4873-9a36-8345b0339610/ENCFF034TXD.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF992CBR bigWig bigWig read-depth normalized signal dm6 ENCSR132NXK Control ChIP-seq /fly-donors/ENCDO659QFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42110/'], '@type': ['Target', 'Item'], 'name': 'Hmx-dmelanogaster', 'label': 'Hmx', '@id': '/targets/Hmx-dmelanogaster/', 'title': 'Hmx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fe22be50-ab8f-4698-b3fe-48820f3f2eec', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF034TXD/ 17408499 Kevin White, UChicago 7f48ca7eb1ee49d8efad40c22a397ed0 https://www.encodeproject.org/files/ENCFF992CBR/@@download/ENCFF992CBR.bigWig released s3://encode-public/2016/06/20/119adda1-2f10-461b-9709-56562202e363/ENCFF992CBR.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF608JNL bigWig bigWig signal of unique reads dm6 ENCSR132NXK Control ChIP-seq /fly-donors/ENCDO659QFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42110/'], '@type': ['Target', 'Item'], 'name': 'Hmx-dmelanogaster', 'label': 'Hmx', '@id': '/targets/Hmx-dmelanogaster/', 'title': 'Hmx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fe22be50-ab8f-4698-b3fe-48820f3f2eec', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF034TXD/ 17374401 Kevin White, UChicago 04ce0810113cd5e73f18aabe25fa2245 https://www.encodeproject.org/files/ENCFF608JNL/@@download/ENCFF608JNL.bigWig released s3://encode-public/2016/06/20/0257436f-d349-4f1e-80ed-a388fb09fa38/ENCFF608JNL.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF001ZUX fastq fastq reads ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 615616197 Bing Ren, UCSD d18f04f0797a1c13d853bffbec34bcf0 SRA:SRR3652405 https://www.encodeproject.org/files/ENCFF001ZUX/@@download/ENCFF001ZUX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/68759033-dcd9-402e-9e7e-a84c237df9ab/ENCFF001ZUX.fastq.gz low read depth, low read length ENCFF001ZVB fastq fastq reads ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 772731323 Bing Ren, UCSD 6cf33fe9a19ca2b567aecbfb9944a8ad SRA:SRR3652404 https://www.encodeproject.org/files/ENCFF001ZVB/@@download/ENCFF001ZVB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/58c517e5-435b-4144-a64d-86eb86adca3d/ENCFF001ZVB.fastq.gz low read depth, low read length ENCFF547PTJ bam bam unfiltered alignments mm10-minimal ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZVB/ 1010089767 ENCODE Processing Pipeline 126af47b78a6671cbded88f61adddfe1 https://www.encodeproject.org/files/ENCFF547PTJ/@@download/ENCFF547PTJ.bam archived s3://encode-public/2015/02/09/f8a7e102-44bd-4d05-891c-b9cb821dff11/ENCFF547PTJ.bam low read depth, low read length ENCFF566JCB bam bam unfiltered alignments mm10-minimal ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUX/ 811977531 ENCODE Processing Pipeline 8510e62e1b5276b4479dbea3ddac312e https://www.encodeproject.org/files/ENCFF566JCB/@@download/ENCFF566JCB.bam archived s3://encode-public/2015/02/09/be38ec39-9ac4-40bc-8049-65ec73d97c88/ENCFF566JCB.bam low read depth, low read length ENCFF656MYX bam bam alignments mm10-minimal ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUX/ 510825701 ENCODE Processing Pipeline da7ac834011971f8aafa227fdd02bebc https://www.encodeproject.org/files/ENCFF656MYX/@@download/ENCFF656MYX.bam archived s3://encode-public/2015/03/11/f4bdc4aa-d60f-4d87-95bb-b85175b85f12/ENCFF656MYX.bam low read depth, low read length ENCFF844PWX bam bam alignments mm10-minimal ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZVB/ 631649649 ENCODE Processing Pipeline 0f8a07c758f47a839f4706427437c157 https://www.encodeproject.org/files/ENCFF844PWX/@@download/ENCFF844PWX.bam archived s3://encode-public/2015/03/11/40693962-c735-4ff5-9fa0-26d011c2c78a/ENCFF844PWX.bam low read depth, low read length ENCFF387OWE bam bam unfiltered alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZVB/ 1011516301 ENCODE Processing Pipeline 83c1a367d1435df831a202ae162c7dd4 https://www.encodeproject.org/files/ENCFF387OWE/@@download/ENCFF387OWE.bam released s3://encode-public/2016/05/20/4dae1443-848c-4878-bae4-fa48d892ff2d/ENCFF387OWE.bam ENCODE3 mm10 archived low read depth, low read length ENCFF536HXD bam bam unfiltered alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUX/ 813313974 ENCODE Processing Pipeline 242614931ebc01a2b2ef24a42abfbfbd https://www.encodeproject.org/files/ENCFF536HXD/@@download/ENCFF536HXD.bam released s3://encode-public/2016/05/20/e366683b-6db6-41a5-a328-b7163d3d35c6/ENCFF536HXD.bam ENCODE3 mm10 archived low read depth, low read length ENCFF026JTV bam bam alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZVB/ 631436874 ENCODE Processing Pipeline 30113fe36cc734075f0f5eed6155439e https://www.encodeproject.org/files/ENCFF026JTV/@@download/ENCFF026JTV.bam released s3://encode-public/2016/05/20/c38bc724-957c-4eb4-8121-a77df35b6335/ENCFF026JTV.bam ENCODE3 mm10 archived low read depth, low read length ENCFF627JLU bam bam alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUX/ 510648401 ENCODE Processing Pipeline 842d6104f4aa1522e970aeee10bcce0f https://www.encodeproject.org/files/ENCFF627JLU/@@download/ENCFF627JLU.bam released s3://encode-public/2016/05/20/d9b91871-47fe-4607-adc5-be77c2af2696/ENCFF627JLU.bam ENCODE3 mm10 archived low read depth, low read length ENCFF269REG bam bam alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUX/ 549008092 ENCODE Processing Pipeline 9d0b9118c0a009d854e22cbd1f3c4785 https://www.encodeproject.org/files/ENCFF269REG/@@download/ENCFF269REG.bam released s3://encode-public/2020/10/08/f9b222aa-ae1c-4ca8-89b4-a20aa64f4f9d/ENCFF269REG.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF236MIT bam bam unfiltered alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUX/ 790897417 ENCODE Processing Pipeline c9fd353a79d59006c4fa92f01f3c337f https://www.encodeproject.org/files/ENCFF236MIT/@@download/ENCFF236MIT.bam released s3://encode-public/2020/10/08/132296bf-8eaf-439e-99f6-0c6bef1afe63/ENCFF236MIT.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF239HSQ bam bam unfiltered alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZVB/, /files/ENCFF309GLL/ 983461875 ENCODE Processing Pipeline 3af724a926cd43a6719df5a25b9cdcf6 https://www.encodeproject.org/files/ENCFF239HSQ/@@download/ENCFF239HSQ.bam released s3://encode-public/2020/10/08/9fc62f1f-3771-4f00-9f8c-9873b6fd7798/ENCFF239HSQ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF840HYE bam bam alignments mm10 ENCSR563WKD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZVB/, /files/ENCFF309GLL/ 678026934 ENCODE Processing Pipeline 2a322213b5b073f199e5c583045ef151 https://www.encodeproject.org/files/ENCFF840HYE/@@download/ENCFF840HYE.bam released s3://encode-public/2020/10/08/395fc8f3-4581-40da-ab7a-a667add60a7c/ENCFF840HYE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF001HGW bam bam alignments hg19 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HHJ/ 693506523 John Stamatoyannopoulos, UW 88e474a8e85077483fae831ecb359aa9 https://www.encodeproject.org/files/ENCFF001HGW/@@download/ENCFF001HGW.bam archived s3://encode-public/2011/06/25/cca9e173-05fc-40d5-a21c-e4a2b32fdb6e/ENCFF001HGW.bam Lab custom hg19 archived low read depth, low read length ENCFF001HGX bigWig bigWig raw signal hg19 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HGW/ 156974421 John Stamatoyannopoulos, UW 21f2a9a9320d32370bb02082a0fc8a71 https://www.encodeproject.org/files/ENCFF001HGX/@@download/ENCFF001HGX.bigWig archived s3://encode-public/2011/06/25/360a0b75-f5cd-4576-ad20-47908d770610/ENCFF001HGX.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HHJ fastq fastq reads ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 745112089 John Stamatoyannopoulos, UW 9e28bf6f14289906f3becdafd99fa548 https://www.encodeproject.org/files/ENCFF001HHJ/@@download/ENCFF001HHJ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/06/25/ba1cef7e-bac0-40ba-a4a1-b679835ce3d5/ENCFF001HHJ.fastq.gz low read depth, low read length ENCFF141UTG bam bam unfiltered alignments GRCh38 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HHJ/ 918021557 ENCODE Processing Pipeline cf14d25f0885fff04aa36ab9820b508e https://www.encodeproject.org/files/ENCFF141UTG/@@download/ENCFF141UTG.bam released s3://encode-public/2016/10/26/03d526ef-7348-4807-b1ef-c7f64217506e/ENCFF141UTG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF412FKY bam bam alignments GRCh38 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HHJ/ 629519898 ENCODE Processing Pipeline 11e6348191125d853f5967dc6d021ed8 https://www.encodeproject.org/files/ENCFF412FKY/@@download/ENCFF412FKY.bam released s3://encode-public/2016/10/26/bba7a305-94d8-4263-a568-8d2e26625a85/ENCFF412FKY.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF417MKS bam bam unfiltered alignments hg19 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HHJ/ 913863789 ENCODE Processing Pipeline 9a9f1a805cc550be0d178cb873d9f8b0 https://www.encodeproject.org/files/ENCFF417MKS/@@download/ENCFF417MKS.bam released s3://encode-public/2016/11/13/ee1803c2-cd0a-44e4-b85d-585089b9fdbf/ENCFF417MKS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF331ASK bam bam alignments hg19 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HHJ/ 629197270 ENCODE Processing Pipeline 8b7c1141dddaa1438b7f5d1153b21f4b https://www.encodeproject.org/files/ENCFF331ASK/@@download/ENCFF331ASK.bam released s3://encode-public/2016/11/13/32acb44a-897e-4f51-98e5-a6a11522aa8f/ENCFF331ASK.bam ENCODE3 hg19 archived low read depth, low read length ENCFF062KNF bam bam unfiltered alignments GRCh38 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HHJ/ 896790915 ENCODE Processing Pipeline 9e13b6050ccc8a0de8c69c90d4be5a19 https://www.encodeproject.org/files/ENCFF062KNF/@@download/ENCFF062KNF.bam released s3://encode-public/2020/09/03/8482a326-a444-4868-b920-164c5d4dde7c/ENCFF062KNF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF541GAL bam bam alignments GRCh38 ENCSR000DRQ Control ChIP-seq /human-donors/ENCDO000ABY/ EFO:0001161 GM12874 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HHJ/ 692866751 ENCODE Processing Pipeline 81f450efcf7e5fff10433d1433389ba2 https://www.encodeproject.org/files/ENCFF541GAL/@@download/ENCFF541GAL.bam released s3://encode-public/2020/09/03/c5191bab-7feb-46bd-850d-dfccc28b3e7e/ENCFF541GAL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000OXB bam bam alignments hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000OXP/ 2151856962 Richard Myers, HAIB d054cac6ba3d1dd4f6dc0363535a8418 https://www.encodeproject.org/files/ENCFF000OXB/@@download/ENCFF000OXB.bam archived s3://encode-public/2012/01/23/c2b0f1c8-ecff-41ef-be86-30e173c5d528/ENCFF000OXB.bam Lab custom hg19 archived ENCFF000OXE bam bam alignments hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000OXQ/ 1554012962 Richard Myers, HAIB a0afac9f5124e4131a96fbd10dc12f52 https://www.encodeproject.org/files/ENCFF000OXE/@@download/ENCFF000OXE.bam archived s3://encode-public/2012/01/23/3e194fba-64b7-45a5-958d-c96e41fa5293/ENCFF000OXE.bam Lab custom hg19 archived ENCFF000OXF bigWig bigWig raw signal hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 268197089 Richard Myers, HAIB 1cf0c0cab0f1f6893c473158352dd063 https://www.encodeproject.org/files/ENCFF000OXF/@@download/ENCFF000OXF.bigWig archived s3://encode-public/2012/01/23/825ae569-ed6f-4350-8239-e4a6aca3a2c0/ENCFF000OXF.bigWig Lab custom hg19 archived ENCFF000OXH bigWig bigWig raw signal hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 149043695 Richard Myers, HAIB bd743ea0e540dcd4530106678bff54ef https://www.encodeproject.org/files/ENCFF000OXH/@@download/ENCFF000OXH.bigWig archived s3://encode-public/2012/01/23/2693e798-894f-405b-ad7c-8db8db58b202/ENCFF000OXH.bigWig Lab custom hg19 archived ENCFF000OXP fastq fastq reads ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 single-ended 2187345522 Richard Myers, HAIB ef5ee73cba09353ba5ce45016041ff25 https://www.encodeproject.org/files/ENCFF000OXP/@@download/ENCFF000OXP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/071cd568-bb83-443f-974d-52ce9ab24bd6/ENCFF000OXP.fastq.gz ENCFF000OXQ fastq fastq reads ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 single-ended 1327129596 Richard Myers, HAIB 508aeb5d9ec97006eaa8b26b3ab1b710 https://www.encodeproject.org/files/ENCFF000OXQ/@@download/ENCFF000OXQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/0d77212a-8588-44ed-8199-35340468a7b3/ENCFF000OXQ.fastq.gz ENCFF672FYS bam bam unfiltered alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000OXP/ 2319367791 ENCODE Processing Pipeline bd3757dbc6d66295412754b13d34be26 https://www.encodeproject.org/files/ENCFF672FYS/@@download/ENCFF672FYS.bam released s3://encode-public/2020/10/27/dca65924-c452-4abc-b4aa-1b84d9e2c63d/ENCFF672FYS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF990SLK bam bam unfiltered alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000OXQ/, /files/ENCFF110MCL/ 1711563493 ENCODE Processing Pipeline 589b7705b94062c7921c473feb7e8065 https://www.encodeproject.org/files/ENCFF990SLK/@@download/ENCFF990SLK.bam released s3://encode-public/2020/10/27/c5b49530-d08a-4746-a8b6-75edf1f0559b/ENCFF990SLK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF549XKN bam bam alignments hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000OXQ/, /files/ENCFF807MUK/ 1158043039 ENCODE Processing Pipeline 2b39fa19d5fcadfbb789ba7ecf8355f8 https://www.encodeproject.org/files/ENCFF549XKN/@@download/ENCFF549XKN.bam released s3://encode-public/2017/06/16/f7633023-09fb-446d-bac0-6678509355cf/ENCFF549XKN.bam ENCODE3 hg19 archived ENCFF599OHS bam bam alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000OXP/, /files/ENCFF643CGH/ 1666719149 ENCODE Processing Pipeline 9a55256e6229067f587c110ab7736499 https://www.encodeproject.org/files/ENCFF599OHS/@@download/ENCFF599OHS.bam released s3://encode-public/2017/06/16/f01c5a0b-35ee-489a-944f-a7a7d88489d5/ENCFF599OHS.bam ENCODE3 GRCh38 archived ENCFF654WVI bam bam unfiltered alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000OXQ/, /files/ENCFF643CGH/ 1704377894 ENCODE Processing Pipeline dbaecae91babe8659063489183d12348 https://www.encodeproject.org/files/ENCFF654WVI/@@download/ENCFF654WVI.bam released s3://encode-public/2017/06/16/6049f79b-d4e4-4f09-8edb-e5b103f1fdd5/ENCFF654WVI.bam ENCODE3 GRCh38 archived ENCFF058QKV bam bam unfiltered alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000OXP/, /files/ENCFF643CGH/ 2329554205 ENCODE Processing Pipeline 0f409ee8be7cf34ee12b862d465c4026 https://www.encodeproject.org/files/ENCFF058QKV/@@download/ENCFF058QKV.bam released s3://encode-public/2017/06/16/f30bfcf6-3209-4f54-9584-64e057366499/ENCFF058QKV.bam ENCODE3 GRCh38 archived ENCFF251VZN bam bam unfiltered alignments hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000OXQ/, /files/ENCFF807MUK/ 1700006787 ENCODE Processing Pipeline 11607429ba2a0fd0ede5dad64b9dc166 https://www.encodeproject.org/files/ENCFF251VZN/@@download/ENCFF251VZN.bam released s3://encode-public/2017/06/16/95828f9b-32f6-4e28-b5ca-d987651fbb90/ENCFF251VZN.bam ENCODE3 hg19 archived ENCFF791TMV bam bam unfiltered alignments hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000OXP/, /files/ENCFF807MUK/ 2323341922 ENCODE Processing Pipeline d77e42b27238e16e4448b20908411f5a https://www.encodeproject.org/files/ENCFF791TMV/@@download/ENCFF791TMV.bam released s3://encode-public/2017/06/16/e5e50909-451d-4598-9b0a-2e09772bc3c3/ENCFF791TMV.bam ENCODE3 hg19 archived ENCFF495JTQ bam bam alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000OXQ/, /files/ENCFF643CGH/ 1158326535 ENCODE Processing Pipeline 6c9f944ee0973606c1bff20b33966b4f https://www.encodeproject.org/files/ENCFF495JTQ/@@download/ENCFF495JTQ.bam released s3://encode-public/2017/06/16/2e29d152-e07e-43e9-8a9f-360ef70acde8/ENCFF495JTQ.bam ENCODE3 GRCh38 archived ENCFF638ZDZ bam bam alignments hg19 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000OXP/, /files/ENCFF807MUK/ 1666222528 ENCODE Processing Pipeline de0330110e22e4cddba109494a6bc61f https://www.encodeproject.org/files/ENCFF638ZDZ/@@download/ENCFF638ZDZ.bam released s3://encode-public/2017/06/16/d05e394b-d7a0-4313-9f77-0cd52b819e39/ENCFF638ZDZ.bam ENCODE3 hg19 archived ENCFF506JKT bam bam alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF000OXP/ 1722697521 ENCODE Processing Pipeline 6af73284feae42884e706806aa6eeb5f https://www.encodeproject.org/files/ENCFF506JKT/@@download/ENCFF506JKT.bam released s3://encode-public/2020/10/27/c3b4bb10-bb10-41a9-9054-874ccaad0f6c/ENCFF506JKT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF173QXI bam bam alignments GRCh38 ENCSR000BVS Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0002319 neural cell in vitro differentiated cells Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000OXQ/, /files/ENCFF110MCL/ 1204596549 ENCODE Processing Pipeline 9650d9fbbea7b0b701f7f0b341b3066a https://www.encodeproject.org/files/ENCFF173QXI/@@download/ENCFF173QXI.bam released s3://encode-public/2020/10/27/ddcab165-b393-40f9-aa71-a6ff7871fc95/ENCFF173QXI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF000NFQ bigWig bigWig raw signal hg19 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 30500172 Richard Myers, HAIB 63eaac506e322ef98fd86c32bf773e28 https://www.encodeproject.org/files/ENCFF000NFQ/@@download/ENCFF000NFQ.bigWig archived s3://encode-public/2012/01/23/81b5fdf1-748c-40b2-8f34-269bcd192c3a/ENCFF000NFQ.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000NFS bam bam alignments hg19 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NGC/ 2063433706 Richard Myers, HAIB 0ed9fcb18aa65411d28de33451b10ed8 https://www.encodeproject.org/files/ENCFF000NFS/@@download/ENCFF000NFS.bam archived s3://encode-public/2012/01/23/6d7a3716-6ea9-48ff-9538-44a499fe27ca/ENCFF000NFS.bam Lab custom hg19 archived low read depth, low read length ENCFF000NGC fastq fastq reads ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 2028371303 Richard Myers, HAIB 7b8cd5db8ede0dbf6f94fa2e5a0f3bdd https://www.encodeproject.org/files/ENCFF000NGC/@@download/ENCFF000NGC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/9de914b5-c7b1-42df-b03b-abca6ef8c82d/ENCFF000NGC.fastq.gz low read depth, low read length ENCFF625RKU bam bam unfiltered alignments GRCh38 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000NGC/ 2419312468 ENCODE Processing Pipeline d072a4c515b5363e740fbf631566e71a https://www.encodeproject.org/files/ENCFF625RKU/@@download/ENCFF625RKU.bam released s3://encode-public/2016/10/26/db6ba577-dfb6-4e33-abbd-3507e22d9144/ENCFF625RKU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF291OFI bam bam alignments GRCh38 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000NGC/ 780441995 ENCODE Processing Pipeline 4a9e09a6c602b6785ca7fbd1c094cc19 https://www.encodeproject.org/files/ENCFF291OFI/@@download/ENCFF291OFI.bam released s3://encode-public/2016/10/26/661a7c1c-7072-471a-accd-90e5ee7ef2e3/ENCFF291OFI.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF129IEY bam bam unfiltered alignments hg19 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000NGC/ 2413648100 ENCODE Processing Pipeline be11ea21bb3d08130510d4ac26b15e77 https://www.encodeproject.org/files/ENCFF129IEY/@@download/ENCFF129IEY.bam released s3://encode-public/2016/11/13/7734f93b-5d16-4935-992e-c1b065dc2d6a/ENCFF129IEY.bam ENCODE3 hg19 archived low read depth, low read length ENCFF686SSI bam bam alignments hg19 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000NGC/ 780641687 ENCODE Processing Pipeline a8e88ae1cc80e4e16bccf627f015e26b https://www.encodeproject.org/files/ENCFF686SSI/@@download/ENCFF686SSI.bam released s3://encode-public/2016/11/13/77b513dc-83ac-4830-8c22-84cf2f36e5d1/ENCFF686SSI.bam ENCODE3 hg19 archived low read depth, low read length ENCFF090QSM bam bam unfiltered alignments GRCh38 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NGC/ 2390705636 ENCODE Processing Pipeline 7f58dc40f19c471225d3d2025728b5b1 https://www.encodeproject.org/files/ENCFF090QSM/@@download/ENCFF090QSM.bam released s3://encode-public/2020/10/28/de9daf96-c84f-426c-b152-cf09ae27f5b8/ENCFF090QSM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF126WTB bam bam alignments GRCh38 ENCSR000BKZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NGC/ 901249052 ENCODE Processing Pipeline 2dbf918dac58d9db7aa4cfb6201ccede https://www.encodeproject.org/files/ENCFF126WTB/@@download/ENCFF126WTB.bam released s3://encode-public/2020/10/28/4a1993c2-8b9f-4e18-94b2-56ec5cb922ad/ENCFF126WTB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF089QPH fastq fastq reads ENCSR523RCF Control ChIP-seq /worm-donors/ENCDO893MUU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 344920330 Kevin White, UChicago 1f39e32faf1456bbd6755baaa8a0b5ce https://www.encodeproject.org/files/ENCFF089QPH/@@download/ENCFF089QPH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/6a1cf5f7-e44f-498d-929e-6d8ed93df81c/ENCFF089QPH.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF384YBX bam bam alignments ce10 ENCSR523RCF Control ChIP-seq /worm-donors/ENCDO893MUU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF089QPH/ 417750584 Kevin White, UChicago 0d2c651d4a1817c9c18af4f0b6bc3a81 https://www.encodeproject.org/files/ENCFF384YBX/@@download/ENCFF384YBX.bam released s3://encode-public/2015/08/19/ae4098e4-8c71-4d71-8a9b-5c178ceb48ba/ENCFF384YBX.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF595EAD bigWig bigWig read-depth normalized signal ce10 ENCSR523RCF Control ChIP-seq /worm-donors/ENCDO893MUU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF384YBX/ 9972115 Kevin White, UChicago e2e668e46211ba0eb64d4f7953ca7be5 https://www.encodeproject.org/files/ENCFF595EAD/@@download/ENCFF595EAD.bigWig released s3://encode-public/2015/10/02/00d0a44c-de5c-41cc-bafb-0f3de5eb3d2f/ENCFF595EAD.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF499XSA bigWig bigWig signal of unique reads ce10 ENCSR523RCF Control ChIP-seq /worm-donors/ENCDO893MUU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF384YBX/ 9969039 Kevin White, UChicago 2c4a1c991a1f3b0b1046b12bfff602a8 https://www.encodeproject.org/files/ENCFF499XSA/@@download/ENCFF499XSA.bigWig released s3://encode-public/2015/10/02/8b571b22-432c-4ad4-acf0-4fc8cd092761/ENCFF499XSA.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF737RRK bam bam alignments ce11 ENCSR523RCF Control ChIP-seq /worm-donors/ENCDO893MUU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF089QPH/ 418090079 Kevin White, UChicago a7a425aec9ccff6f044d6816c5ac3954 https://www.encodeproject.org/files/ENCFF737RRK/@@download/ENCFF737RRK.bam released s3://encode-public/2016/01/17/5564934e-ad1c-418e-b9d7-248594178627/ENCFF737RRK.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF338XHK bigWig bigWig signal of unique reads ce11 ENCSR523RCF Control ChIP-seq /worm-donors/ENCDO893MUU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '942161ab-2671-4988-b201-fc2f54da213b', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF737RRK/ 9966168 Kevin White, UChicago a65ee3bef2cbe7f6990c818ee2a59cfb https://www.encodeproject.org/files/ENCFF338XHK/@@download/ENCFF338XHK.bigWig released s3://encode-public/2016/02/03/1cd87f30-37d1-44be-902a-fdabc1f572aa/ENCFF338XHK.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF653YCA bigWig bigWig read-depth normalized signal ce11 ENCSR523RCF Control ChIP-seq /worm-donors/ENCDO893MUU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180359/'], '@type': ['Target', 'Item'], 'name': 'hif-1-celegans', 'label': 'hif-1', '@id': '/targets/hif-1-celegans/', 'title': 'hif-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription 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2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARL/ 657252150 ENCODE Processing Pipeline 33c3720072c9a0b7ef0fbf2c988f5dda https://www.encodeproject.org/files/ENCFF482UTL/@@download/ENCFF482UTL.bam released s3://encode-public/2016/05/20/29c18f97-d807-43ad-a655-2b05b84d38af/ENCFF482UTL.bam ENCODE3 mm10 archived low read depth, low read length ENCFF292SSW bam bam alignments mm10 ENCSR050VUZ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARI/ 769632160 ENCODE Processing Pipeline 61569bd3d5b6128ed3239b29d182f99d https://www.encodeproject.org/files/ENCFF292SSW/@@download/ENCFF292SSW.bam released s3://encode-public/2016/05/20/dd5d02de-e9d3-4558-ad19-e18c96323e45/ENCFF292SSW.bam ENCODE3 mm10 archived low read depth, low read length ENCFF826FLF bam bam unfiltered alignments mm10 ENCSR050VUZ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002ARI/, /files/ENCFF309GLL/ 1124993878 ENCODE Processing Pipeline fcbe00d43dadb13b7c5230eabe4d5872 https://www.encodeproject.org/files/ENCFF826FLF/@@download/ENCFF826FLF.bam released s3://encode-public/2020/10/08/8a2544af-1a7a-461f-a523-5bf2f535295a/ENCFF826FLF.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF485LMM bam bam unfiltered alignments mm10 ENCSR050VUZ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARL/, /files/ENCFF309GLL/ 998288367 ENCODE Processing Pipeline 5b2611ad31cc856a7072c0465c9e0147 https://www.encodeproject.org/files/ENCFF485LMM/@@download/ENCFF485LMM.bam released s3://encode-public/2020/10/08/ea407c81-9b06-4183-bdcb-cd30b52acf5d/ENCFF485LMM.bam ENCODE4 v1.5.1 mm10 released low read 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s3://encode-public/2020/10/08/f0a8a649-2b97-41f4-a9c0-07babf89dc00/ENCFF203DXI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF002BXW fastq fastq reads ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 1024807998 Bing Ren, UCSD c88872964b4db3d62c5ce03aeffd426d SRA:SRR3653066 https://www.encodeproject.org/files/ENCFF002BXW/@@download/ENCFF002BXW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/cf8d816a-b7b5-4445-bfe9-1dd579fa8ac9/ENCFF002BXW.fastq.gz low read depth, low read length, mixed read lengths ENCFF118FEW fastq fastq reads ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 238676180 Bing Ren, UCSD 8a921c02db71586f05441d1cf71fc54e SRA:SRR3653063 https://www.encodeproject.org/files/ENCFF118FEW/@@download/ENCFF118FEW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/09/e2002a9c-9429-4b2d-91ad-308e01b6a83d/ENCFF118FEW.fastq.gz low read depth, low read length, mixed read lengths ENCFF249RWY fastq fastq reads ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_2 36 single-ended 350733380 Bing Ren, UCSD fc06a99f821a6e290324133aaf94228f SRA:SRR3653064 https://www.encodeproject.org/files/ENCFF249RWY/@@download/ENCFF249RWY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/12/09/56210c67-dcce-4f57-81f5-08254bf65c0b/ENCFF249RWY.fastq.gz low read depth, low read length, mixed read lengths ENCFF482JNU fastq fastq reads ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 429675305 Bing Ren, UCSD dedeb767953023916fc8d0d68f57e02c SRA:SRR3653065 https://www.encodeproject.org/files/ENCFF482JNU/@@download/ENCFF482JNU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/12/09/e4e163f2-45a1-4e47-85e9-e5a616779249/ENCFF482JNU.fastq.gz low read depth, low read length, mixed read lengths ENCFF529OUC bam bam unfiltered alignments mm10-minimal ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXW/ 1313949545 ENCODE Processing Pipeline 3bad35c4583448182d2f0fb63fd70442 https://www.encodeproject.org/files/ENCFF529OUC/@@download/ENCFF529OUC.bam archived s3://encode-public/2015/02/09/a4d379be-0047-4646-a4e3-0527a679a85a/ENCFF529OUC.bam low read depth, low read length, mixed read lengths ENCFF489FIL bam bam unfiltered alignments mm10-minimal ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF482JNU/, /files/ENCFF249RWY/, /files/ENCFF118FEW/, /files/ENCFF806TVZ/ 1280103900 ENCODE Processing Pipeline 98ab393998de0c7b0acff957f3b94200 https://www.encodeproject.org/files/ENCFF489FIL/@@download/ENCFF489FIL.bam archived s3://encode-public/2015/02/09/81761440-7e0b-45d0-ba74-866050bf5268/ENCFF489FIL.bam low read depth, low read length, mixed read lengths ENCFF578PIN bam bam alignments mm10-minimal ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF482JNU/, /files/ENCFF249RWY/, /files/ENCFF118FEW/, /files/ENCFF806TVZ/ 703940133 ENCODE Processing Pipeline 3515de2654df42c571be039cf9ea464e https://www.encodeproject.org/files/ENCFF578PIN/@@download/ENCFF578PIN.bam archived s3://encode-public/2015/03/06/c62f20b4-e02c-411e-9f3f-b526aa37dec7/ENCFF578PIN.bam low read depth, low read length, mixed read lengths ENCFF439PVF bam bam alignments mm10-minimal ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXW/ 777493645 ENCODE Processing Pipeline 9075b2c14eef401fe5316164df8f94c2 https://www.encodeproject.org/files/ENCFF439PVF/@@download/ENCFF439PVF.bam archived s3://encode-public/2015/03/06/5b8113ab-023f-4e46-ad62-80196427833b/ENCFF439PVF.bam low read depth, low read length, mixed read lengths ENCFF680AIX bam bam unfiltered alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXW/ 1315859761 ENCODE Processing Pipeline 54932db4806c50622166324503536ec3 https://www.encodeproject.org/files/ENCFF680AIX/@@download/ENCFF680AIX.bam released s3://encode-public/2016/05/20/300d5750-62d5-43c8-8038-f49f3804fd22/ENCFF680AIX.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF749WCS bam bam alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXW/ 777186155 ENCODE Processing Pipeline c3bab1cea1e2f9e013fbb5ae8d7c4c5a https://www.encodeproject.org/files/ENCFF749WCS/@@download/ENCFF749WCS.bam released s3://encode-public/2016/05/20/d6fd811a-4c86-47c7-9891-f2572c620fdf/ENCFF749WCS.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF845HKH bam bam unfiltered alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 36 /files/ENCFF482JNU/, /files/ENCFF249RWY/, /files/ENCFF018NEO/, /files/ENCFF118FEW/ 1113352901 ENCODE Processing Pipeline f731764f06b16cc63c7227cfa0c6860e https://www.encodeproject.org/files/ENCFF845HKH/@@download/ENCFF845HKH.bam released s3://encode-public/2016/11/22/0ad7ccd5-ac33-4444-9f13-22566388b272/ENCFF845HKH.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF397HOQ bam bam alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 36 /files/ENCFF482JNU/, /files/ENCFF249RWY/, /files/ENCFF018NEO/, /files/ENCFF118FEW/ 583914160 ENCODE Processing Pipeline b4fd4c9e7085a29639c072e7e9b5c9c2 https://www.encodeproject.org/files/ENCFF397HOQ/@@download/ENCFF397HOQ.bam released s3://encode-public/2016/11/22/1bc15c2b-6c25-4f13-84dd-d5aa0d18f8c8/ENCFF397HOQ.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF262IUO bam bam unfiltered alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXW/, /files/ENCFF309GLL/ 1278510061 ENCODE Processing Pipeline 472f7a94edb5f1fdae053320e92a7ae5 https://www.encodeproject.org/files/ENCFF262IUO/@@download/ENCFF262IUO.bam released s3://encode-public/2020/10/07/82ff6c60-5685-4ddd-968d-b8778ae05c7e/ENCFF262IUO.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF983NVG bam bam alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXW/, /files/ENCFF309GLL/ 836641141 ENCODE Processing Pipeline db735b76d093d9f6eb6d0fd1999f3052 https://www.encodeproject.org/files/ENCFF983NVG/@@download/ENCFF983NVG.bam released s3://encode-public/2020/10/07/3f635fc6-1e35-4969-8e55-de66d196b3fa/ENCFF983NVG.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF015ZVD bam bam unfiltered alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 36 /files/ENCFF249RWY/, /files/ENCFF118FEW/, /files/ENCFF482JNU/, /files/ENCFF309GLL/ 1087105036 ENCODE Processing Pipeline f474bfda8ca0fa50e72b4870c62bad21 https://www.encodeproject.org/files/ENCFF015ZVD/@@download/ENCFF015ZVD.bam released s3://encode-public/2020/10/07/586042e8-d9fd-473c-b059-d86d36fec536/ENCFF015ZVD.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF516NUV bam bam alignments mm10 ENCSR817FFF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 36 /files/ENCFF249RWY/, /files/ENCFF118FEW/, /files/ENCFF482JNU/, /files/ENCFF309GLL/ 631383353 ENCODE Processing Pipeline 709d27c938dd2695ec87bbe76c741b78 https://www.encodeproject.org/files/ENCFF516NUV/@@download/ENCFF516NUV.bam released s3://encode-public/2020/10/07/0409e9f0-14f3-4da3-9d8a-64587647e7fc/ENCFF516NUV.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF002ARC fastq fastq reads ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1547759877 Bing Ren, UCSD a3850b7c7aeeebda140fe2de9cca1bb3 SRA:SRR3651658 https://www.encodeproject.org/files/ENCFF002ARC/@@download/ENCFF002ARC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/03/15/aa72e974-119e-41a5-b303-88e97a64c46c/ENCFF002ARC.fastq.gz ENCFF002ARH fastq fastq reads ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2064375940 Bing Ren, UCSD fad5c24c991d5635ceedab589e5ca42e SRA:SRR3651657 https://www.encodeproject.org/files/ENCFF002ARH/@@download/ENCFF002ARH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/d5a0b2c0-fc76-43ac-adda-edb4fa0052c0/ENCFF002ARH.fastq.gz ENCFF003JEV bam bam unfiltered alignments mm10-minimal ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002ARH/ 2274942630 ENCODE Processing Pipeline f9c01d4dc67c7ad3e3a0c4bd9e6fa132 https://www.encodeproject.org/files/ENCFF003JEV/@@download/ENCFF003JEV.bam archived s3://encode-public/2015/02/09/c0359d0b-99e8-499a-b9a2-7a37592d045e/ENCFF003JEV.bam ENCFF383GLQ bam bam unfiltered alignments mm10-minimal ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARC/, /files/ENCFF806TVZ/ 1767554714 ENCODE Processing Pipeline 79c0289542237deee025d7ff43696c7a https://www.encodeproject.org/files/ENCFF383GLQ/@@download/ENCFF383GLQ.bam archived s3://encode-public/2015/02/09/43117320-6d9d-428d-aa47-0220d37c517c/ENCFF383GLQ.bam ENCFF156ZPL bam bam alignments mm10-minimal ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002ARH/ 1641440883 ENCODE Processing Pipeline dc3e1f32e8346026ffaedde81a0400ad https://www.encodeproject.org/files/ENCFF156ZPL/@@download/ENCFF156ZPL.bam archived s3://encode-public/2015/05/23/c8859b54-474a-4664-ac48-df6fa450fb4b/ENCFF156ZPL.bam ENCFF989KGL bam bam alignments mm10-minimal ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARC/, /files/ENCFF806TVZ/ 1217303678 ENCODE Processing Pipeline 4e8d4340681c5c867efc2d4f5bb0b698 https://www.encodeproject.org/files/ENCFF989KGL/@@download/ENCFF989KGL.bam archived s3://encode-public/2015/05/23/d745a5c4-1152-418b-b454-bd73252f0db3/ENCFF989KGL.bam ENCFF342RVS bam bam unfiltered alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARC/ 1769721311 ENCODE Processing Pipeline 22b58934bf497e12d407fdeffe86dc28 https://www.encodeproject.org/files/ENCFF342RVS/@@download/ENCFF342RVS.bam released s3://encode-public/2016/05/20/b2e3c804-cbb9-495f-a340-da67e1af7756/ENCFF342RVS.bam ENCODE3 mm10 archived ENCFF876XRR bam bam unfiltered alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARH/ 2277070177 ENCODE Processing Pipeline caa571a5505a6055fd65198538255d90 https://www.encodeproject.org/files/ENCFF876XRR/@@download/ENCFF876XRR.bam released s3://encode-public/2016/05/20/fb0da5d9-078a-4f34-9dab-53812a74218d/ENCFF876XRR.bam ENCODE3 mm10 archived ENCFF517DFW bam bam alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARC/ 1216950146 ENCODE Processing Pipeline fef0e920f685a889dd0b37adaac28f61 https://www.encodeproject.org/files/ENCFF517DFW/@@download/ENCFF517DFW.bam released s3://encode-public/2016/05/20/df77b3ce-84d3-4274-bf14-c59996184f20/ENCFF517DFW.bam ENCODE3 mm10 archived ENCFF040DTM bam bam alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARH/ 1640988539 ENCODE 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1442407451 ENCODE Processing Pipeline 5ceabc58776e4be02b464014c22e079e https://www.encodeproject.org/files/ENCFF161OWF/@@download/ENCFF161OWF.bam released s3://encode-public/2016/10/03/8d460625-dccc-411b-9c75-d2c3af226219/ENCFF161OWF.bam ENCODE3 mm10 archived ENCFF922FWV bam bam alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARH/ 1258909760 ENCODE Processing Pipeline ba66f279e6b53fd3034c620f19b03f78 https://www.encodeproject.org/files/ENCFF922FWV/@@download/ENCFF922FWV.bam released s3://encode-public/2016/10/03/cd733a0f-3d24-499b-80d8-5cee2c1c2dd6/ENCFF922FWV.bam ENCODE3 mm10 archived ENCFF782YCY bam bam alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARC/ 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/files/ENCFF002ARC/ 1408157691 ENCODE Processing Pipeline e4b4a22c373ffdab36640acce435dc6f https://www.encodeproject.org/files/ENCFF926JOR/@@download/ENCFF926JOR.bam released s3://encode-public/2020/10/10/86db30b8-f42d-4d0b-b5a1-dd4c5c1c2190/ENCFF926JOR.bam ENCODE4 v1.5.1 mm10 released ENCFF490PCI bam bam alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARH/, /files/ENCFF309GLL/ 1352462416 ENCODE Processing Pipeline b659fdbf0c5f95883e4eb2b2d59a90ee https://www.encodeproject.org/files/ENCFF490PCI/@@download/ENCFF490PCI.bam released s3://encode-public/2020/10/10/a728f8f3-9cb5-4c0c-9f71-91058d736be6/ENCFF490PCI.bam ENCODE4 v1.5.1 mm10 released ENCFF545WEV bam bam unfiltered alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARC/, /files/ENCFF309GLL/ 1742059086 ENCODE Processing Pipeline faf4305353cb8b46c7e59e73055d908e https://www.encodeproject.org/files/ENCFF545WEV/@@download/ENCFF545WEV.bam released s3://encode-public/2020/10/08/c3883ba4-a434-41ee-b77e-f40ebfd62edf/ENCFF545WEV.bam ENCODE4 v1.5.1 mm10 released ENCFF719ZUX bam bam unfiltered alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF002ARH/, /files/ENCFF309GLL/ 2261215430 ENCODE Processing Pipeline c1d87e067d1de2222cf6918f9be91f5b https://www.encodeproject.org/files/ENCFF719ZUX/@@download/ENCFF719ZUX.bam released s3://encode-public/2020/10/08/c0d6e927-b156-48b6-9fd6-e2b8cab7bb75/ENCFF719ZUX.bam ENCODE4 v1.5.1 mm10 released ENCFF162XAE bam bam alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002ARC/, /files/ENCFF309GLL/ 1270766560 ENCODE Processing Pipeline 7e2da3ad20990ed6cf48598988e92889 https://www.encodeproject.org/files/ENCFF162XAE/@@download/ENCFF162XAE.bam released s3://encode-public/2020/10/08/6a7fb322-f8d4-4751-87ad-651326a0d6b1/ENCFF162XAE.bam ENCODE4 v1.5.1 mm10 released ENCFF743OHK bam bam alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF002ARC/ 1003362353 ENCODE Processing Pipeline e0d76269e715087401cc5d43d2474efd https://www.encodeproject.org/files/ENCFF743OHK/@@download/ENCFF743OHK.bam released s3://encode-public/2020/10/10/2fb1c1d8-e4ad-426a-aeab-7aa75d3f38d5/ENCFF743OHK.bam ENCODE4 v1.5.1 mm10 released ENCFF794VMU bam bam unfiltered alignments mm10 ENCSR241RIG Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARH/, /files/ENCFF309GLL/ 1825212510 ENCODE Processing Pipeline 59a21abd4e7d424e398654ebe95d081e https://www.encodeproject.org/files/ENCFF794VMU/@@download/ENCFF794VMU.bam released s3://encode-public/2020/10/10/745e2ac8-69fe-48b8-b500-c2a7bffcfdc2/ENCFF794VMU.bam ENCODE4 v1.5.1 mm10 released ENCFF108SEP fastq fastq reads ENCSR960AXB Control ChIP-seq /fly-donors/ENCDO749FWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31883/'], '@type': ['Target', 'Item'], 'name': 'lz-dmelanogaster', 'label': 'lz', '@id': '/targets/lz-dmelanogaster/', 'title': 'lz (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c58562-e668-4709-acdb-9df3bb6ed935', 'status': 'released'} dm3 X 9132271 9217888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 380040214 Kevin White, UChicago 5db91b7c2e5f859465918227ad0a72af https://www.encodeproject.org/files/ENCFF108SEP/@@download/ENCFF108SEP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/c9067eda-bfdc-4a67-bc3b-f74c799ef7cb/ENCFF108SEP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF870NJB bam bam alignments dm3 ENCSR960AXB Control ChIP-seq /fly-donors/ENCDO749FWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31883/'], '@type': ['Target', 'Item'], 'name': 'lz-dmelanogaster', 'label': 'lz', '@id': '/targets/lz-dmelanogaster/', 'title': 'lz (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c58562-e668-4709-acdb-9df3bb6ed935', 'status': 'released'} dm3 X 9132271 9217888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870NJB/ 15104066 Kevin White, UChicago 0279fa3a3c36645c655b2760d753e5fa https://www.encodeproject.org/files/ENCFF686MTU/@@download/ENCFF686MTU.bigWig released s3://encode-public/2015/10/06/c6ddfad5-2d7b-453d-88ca-fe2ecffbde11/ENCFF686MTU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF256WIA bigWig bigWig read-depth normalized signal dm3 ENCSR960AXB Control ChIP-seq /fly-donors/ENCDO749FWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31883/'], '@type': ['Target', 'Item'], 'name': 'lz-dmelanogaster', 'label': 'lz', '@id': '/targets/lz-dmelanogaster/', 'title': 'lz (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c58562-e668-4709-acdb-9df3bb6ed935', 'status': 'released'} dm3 X 9132271 9217888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870NJB/ 15118208 Kevin White, UChicago da7866b1cafc29adffb09718ac684422 https://www.encodeproject.org/files/ENCFF256WIA/@@download/ENCFF256WIA.bigWig released s3://encode-public/2015/10/06/c0570678-59c8-46f4-b93a-968b5853fcde/ENCFF256WIA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF868CLE bam bam alignments dm6 ENCSR960AXB Control ChIP-seq /fly-donors/ENCDO749FWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31883/'], '@type': ['Target', 'Item'], 'name': 'lz-dmelanogaster', 'label': 'lz', '@id': '/targets/lz-dmelanogaster/', 'title': 'lz (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c58562-e668-4709-acdb-9df3bb6ed935', 'status': 'released'} dm3 X 9132271 9217888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF108SEP/ 561763002 Kevin White, UChicago f96100275aad78b8c410ae027017c7f2 https://www.encodeproject.org/files/ENCFF868CLE/@@download/ENCFF868CLE.bam released s3://encode-public/2016/04/21/82c23415-2150-4ab7-b662-8c3c2029ae3c/ENCFF868CLE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF971BRM bigWig bigWig read-depth normalized signal dm6 ENCSR960AXB Control ChIP-seq /fly-donors/ENCDO749FWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31883/'], '@type': ['Target', 'Item'], 'name': 'lz-dmelanogaster', 'label': 'lz', '@id': '/targets/lz-dmelanogaster/', 'title': 'lz (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c58562-e668-4709-acdb-9df3bb6ed935', 'status': 'released'} dm3 X 9132271 9217888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF868CLE/ 17181081 Kevin White, UChicago b5d8d86a3c0c8f6bf6c73c68a483b043 https://www.encodeproject.org/files/ENCFF971BRM/@@download/ENCFF971BRM.bigWig released s3://encode-public/2016/06/21/e826f6c7-1ed7-4a09-a7fb-1abc12c15ced/ENCFF971BRM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF995PNV bigWig bigWig signal of unique reads dm6 ENCSR960AXB Control ChIP-seq /fly-donors/ENCDO749FWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31883/'], '@type': ['Target', 'Item'], 'name': 'lz-dmelanogaster', 'label': 'lz', '@id': '/targets/lz-dmelanogaster/', 'title': 'lz (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c58562-e668-4709-acdb-9df3bb6ed935', 'status': 'released'} dm3 X 9132271 9217888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF868CLE/ 17178838 Kevin White, UChicago 2d2e3915e20534abbfaef4170072bbb8 https://www.encodeproject.org/files/ENCFF995PNV/@@download/ENCFF995PNV.bigWig released s3://encode-public/2016/06/21/9abb6203-a390-45c3-b092-09c9fb8e9ce7/ENCFF995PNV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002BYB fastq fastq reads ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 1190201877 Bing Ren, UCSD d57e02bbfab28f080f96230f77b3152e SRA:SRR3651170 https://www.encodeproject.org/files/ENCFF002BYB/@@download/ENCFF002BYB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/05/29/e044d110-424e-4512-9397-1defa0d4d24f/ENCFF002BYB.fastq.gz low read length ENCFF002BYC fastq fastq reads ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1299481860 Bing Ren, UCSD 98f2c7e08c585ff66f8b11c30998b232 SRA:SRR3651171 https://www.encodeproject.org/files/ENCFF002BYC/@@download/ENCFF002BYC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/05/29/a0322b1d-b81b-43cb-bd4a-433d8d0df533/ENCFF002BYC.fastq.gz low read length ENCFF531TMH bam bam unfiltered alignments mm10-minimal ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BYC/ 1696244215 ENCODE Processing Pipeline af2dbc1d1456e47cfe209415f2994ae1 https://www.encodeproject.org/files/ENCFF531TMH/@@download/ENCFF531TMH.bam archived s3://encode-public/2015/02/09/2026cc1c-02eb-484e-a025-7df3f9abb255/ENCFF531TMH.bam low read length ENCFF450KHI bam bam unfiltered alignments mm10-minimal ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BYB/ 1558193148 ENCODE Processing Pipeline cc855d03f8f417dec185eb20d07b9b55 https://www.encodeproject.org/files/ENCFF450KHI/@@download/ENCFF450KHI.bam archived s3://encode-public/2015/02/09/5ccf9117-ed39-4cec-b1af-3a98bcb4592d/ENCFF450KHI.bam low read length ENCFF141POR bam bam alignments mm10-minimal ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BYC/ 1093667148 ENCODE Processing Pipeline ec2b4d91b9c4a04bbade503ce88b6357 https://www.encodeproject.org/files/ENCFF141POR/@@download/ENCFF141POR.bam archived s3://encode-public/2015/03/20/417dd302-8a81-4fe7-bdeb-96f712b1ced1/ENCFF141POR.bam low read length ENCFF783YRC bam bam alignments mm10-minimal ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BYB/ 1003940371 ENCODE Processing Pipeline 1588c74c7e2692c4c84898ef428475b0 https://www.encodeproject.org/files/ENCFF783YRC/@@download/ENCFF783YRC.bam archived s3://encode-public/2015/03/20/1fb371cd-3ba0-4f2a-89ba-eb5c5a85446f/ENCFF783YRC.bam low read length ENCFF877RBE bam bam unfiltered alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BYB/ 1560603679 ENCODE Processing Pipeline 738a106bddd051d44f31c2afb08bfcfb https://www.encodeproject.org/files/ENCFF877RBE/@@download/ENCFF877RBE.bam released s3://encode-public/2016/05/20/ada02e23-69cf-426f-bfe0-a703ad6fee2d/ENCFF877RBE.bam ENCODE3 mm10 archived low read length ENCFF898UGK bam bam unfiltered alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BYC/ 1698777330 ENCODE Processing Pipeline 494c254d69deb851f88a1add4df1222d https://www.encodeproject.org/files/ENCFF898UGK/@@download/ENCFF898UGK.bam released s3://encode-public/2016/05/20/2a3add64-8770-4cb5-817c-7e930d7eb0fb/ENCFF898UGK.bam ENCODE3 mm10 archived low read length ENCFF658UBJ bam bam alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BYB/ 1003572125 ENCODE Processing Pipeline 03fb3c3cf468ad177f23c30747aa98cd https://www.encodeproject.org/files/ENCFF658UBJ/@@download/ENCFF658UBJ.bam released s3://encode-public/2016/05/20/0202c477-2278-48e3-87b2-06af240aff23/ENCFF658UBJ.bam ENCODE3 mm10 archived low read length ENCFF025IEP bam bam alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BYC/ 1093315387 ENCODE Processing Pipeline 6b82655bdf36876ba0727bda182905af https://www.encodeproject.org/files/ENCFF025IEP/@@download/ENCFF025IEP.bam released s3://encode-public/2016/05/20/88406542-945e-47fa-82a4-accb3ed63945/ENCFF025IEP.bam ENCODE3 mm10 archived low read length ENCFF823FAA bam bam unfiltered alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BYB/, /files/ENCFF309GLL/ 1512580313 ENCODE Processing Pipeline 78a36db6e2408656bfc9d38c28bd2399 https://www.encodeproject.org/files/ENCFF823FAA/@@download/ENCFF823FAA.bam released s3://encode-public/2020/10/08/849f26d0-c547-4390-b6aa-ed57bc6c2399/ENCFF823FAA.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF633XIP bam bam alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BYB/, /files/ENCFF309GLL/ 1076349509 ENCODE Processing Pipeline 439b90a51854639944c92b27574074e4 https://www.encodeproject.org/files/ENCFF633XIP/@@download/ENCFF633XIP.bam released s3://encode-public/2020/10/08/6b5824fb-2097-4345-a949-f7d3544f6978/ENCFF633XIP.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF742MRS bam bam unfiltered alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BYC/, /files/ENCFF309GLL/ 1647205821 ENCODE Processing Pipeline 7453777675d4c76738eda53b8c70cf97 https://www.encodeproject.org/files/ENCFF742MRS/@@download/ENCFF742MRS.bam released s3://encode-public/2020/10/08/c19a570b-5340-4de3-850e-e83ae3c43049/ENCFF742MRS.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF657FSC bam bam alignments mm10 ENCSR012BVY Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BYC/, /files/ENCFF309GLL/ 1172069805 ENCODE Processing Pipeline 08adc993185565f919b1c8d5b34bcc36 https://www.encodeproject.org/files/ENCFF657FSC/@@download/ENCFF657FSC.bam released s3://encode-public/2020/10/08/50ff6459-3af9-4778-9871-2a3d5a2330be/ENCFF657FSC.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF315HMO fastq fastq reads ENCSR161RRC Control ChIP-seq /fly-donors/ENCDO440WCF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768981/'], '@type': ['Target', 'Item'], 'name': 'Trl-dmelanogaster', 'label': 'Trl', '@id': '/targets/Trl-dmelanogaster/', 'title': 'Trl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2f64fb8c-3516-495e-aaae-12f0fd11bc69', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 663050754 Kevin White, UChicago b485e6d635988df5c170b40f7d0bf266 https://www.encodeproject.org/files/ENCFF315HMO/@@download/ENCFF315HMO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f06eacb5-e6d2-47e4-9ef4-c52a59a72e12/ENCFF315HMO.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF241ANI bam bam alignments dm3 ENCSR161RRC Control ChIP-seq /fly-donors/ENCDO440WCF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768981/'], '@type': ['Target', 'Item'], 'name': 'Trl-dmelanogaster', 'label': 'Trl', '@id': '/targets/Trl-dmelanogaster/', 'title': 'Trl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2f64fb8c-3516-495e-aaae-12f0fd11bc69', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF315HMO/ 967196018 Kevin White, UChicago 088b064124d081e27a8fe3b50a0be930 https://www.encodeproject.org/files/ENCFF241ANI/@@download/ENCFF241ANI.bam released s3://encode-public/2015/08/03/098d82d8-aeb2-442c-be3c-33c630ad4f16/ENCFF241ANI.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF683DFL bigWig bigWig signal of unique reads dm3 ENCSR161RRC Control ChIP-seq /fly-donors/ENCDO440WCF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768981/'], '@type': ['Target', 'Item'], 'name': 'Trl-dmelanogaster', 'label': 'Trl', '@id': '/targets/Trl-dmelanogaster/', 'title': 'Trl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2f64fb8c-3516-495e-aaae-12f0fd11bc69', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF241ANI/ 15342407 Kevin White, UChicago 1d752eb5deffd3b45e2fd2f8d9d8bb7f https://www.encodeproject.org/files/ENCFF683DFL/@@download/ENCFF683DFL.bigWig released s3://encode-public/2015/10/06/221874a8-f0a6-4d39-bbc9-497bd54c2fab/ENCFF683DFL.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF679NFA bigWig bigWig read-depth normalized signal dm3 ENCSR161RRC Control ChIP-seq /fly-donors/ENCDO440WCF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768981/'], '@type': ['Target', 'Item'], 'name': 'Trl-dmelanogaster', 'label': 'Trl', '@id': '/targets/Trl-dmelanogaster/', 'title': 'Trl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2f64fb8c-3516-495e-aaae-12f0fd11bc69', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF241ANI/ 15345399 Kevin White, UChicago 21ad51169795eae8e9a5adc2437082ab https://www.encodeproject.org/files/ENCFF679NFA/@@download/ENCFF679NFA.bigWig released s3://encode-public/2015/10/06/9d5bde21-5a32-4ec5-939c-d74c6be94cf5/ENCFF679NFA.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF569CSB bam bam alignments dm6 ENCSR161RRC Control ChIP-seq /fly-donors/ENCDO440WCF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768981/'], '@type': ['Target', 'Item'], 'name': 'Trl-dmelanogaster', 'label': 'Trl', '@id': '/targets/Trl-dmelanogaster/', 'title': 'Trl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2f64fb8c-3516-495e-aaae-12f0fd11bc69', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF315HMO/ 962512293 Kevin White, UChicago 57c5169bcb0afbb96d7d693085e7a2a1 https://www.encodeproject.org/files/ENCFF569CSB/@@download/ENCFF569CSB.bam released s3://encode-public/2016/04/22/1469b782-8905-48e2-b414-ed9e38d51c22/ENCFF569CSB.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF425TBK bigWig bigWig signal of unique reads dm6 ENCSR161RRC Control ChIP-seq /fly-donors/ENCDO440WCF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768981/'], '@type': ['Target', 'Item'], 'name': 'Trl-dmelanogaster', 'label': 'Trl', '@id': '/targets/Trl-dmelanogaster/', 'title': 'Trl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2f64fb8c-3516-495e-aaae-12f0fd11bc69', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF569CSB/ 17443323 Kevin White, UChicago 7ba0f6657bfba2493c611d7e88e87a92 https://www.encodeproject.org/files/ENCFF425TBK/@@download/ENCFF425TBK.bigWig released s3://encode-public/2016/06/21/4e1b9400-bca4-4e9e-b3a2-811d35c1f0fd/ENCFF425TBK.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF848LOQ bigWig bigWig read-depth normalized signal dm6 ENCSR161RRC Control ChIP-seq /fly-donors/ENCDO440WCF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768981/'], '@type': ['Target', 'Item'], 'name': 'Trl-dmelanogaster', 'label': 'Trl', '@id': '/targets/Trl-dmelanogaster/', 'title': 'Trl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2f64fb8c-3516-495e-aaae-12f0fd11bc69', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF569CSB/ 17441788 Kevin White, UChicago 06cba67f07e5921fcec662a40279d9cc https://www.encodeproject.org/files/ENCFF848LOQ/@@download/ENCFF848LOQ.bigWig released s3://encode-public/2016/06/21/fc30f987-5c5b-47d4-9206-e1c90bf5c119/ENCFF848LOQ.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF435KAH fastq fastq reads ENCSR200IVZ Control ChIP-seq /worm-donors/ENCDO658BSS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177938/'], '@type': ['Target', 'Item'], 'name': 'mec-3-celegans', 'label': 'mec-3', '@id': '/targets/mec-3-celegans/', 'title': 'mec-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '57457cbd-f7cd-4efb-bea3-657979f4afad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 493412320 Kevin White, UChicago a480f90a4d70a8dcebe3b711d2da1f83 https://www.encodeproject.org/files/ENCFF435KAH/@@download/ENCFF435KAH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/a47e6626-797a-4a15-b36f-b2eb01cb77a2/ENCFF435KAH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF423UUH bam bam alignments ce10 ENCSR200IVZ Control ChIP-seq /worm-donors/ENCDO658BSS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177938/'], '@type': ['Target', 'Item'], 'name': 'mec-3-celegans', 'label': 'mec-3', '@id': '/targets/mec-3-celegans/', 'title': 'mec-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '57457cbd-f7cd-4efb-bea3-657979f4afad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF435KAH/ 711221310 Kevin White, UChicago b7aa549856fb1daf2a90d5a2de4cd4cb https://www.encodeproject.org/files/ENCFF423UUH/@@download/ENCFF423UUH.bam released s3://encode-public/2015/08/07/2405e133-6853-4517-9b09-0a315267a17c/ENCFF423UUH.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF793FTX bigWig bigWig signal of unique reads ce10 ENCSR200IVZ Control ChIP-seq /worm-donors/ENCDO658BSS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177938/'], '@type': ['Target', 'Item'], 'name': 'mec-3-celegans', 'label': 'mec-3', '@id': '/targets/mec-3-celegans/', 'title': 'mec-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '57457cbd-f7cd-4efb-bea3-657979f4afad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF423UUH/ 9969208 Kevin White, UChicago cd0719ad505a45e1ccad3c56e6677f8b https://www.encodeproject.org/files/ENCFF793FTX/@@download/ENCFF793FTX.bigWig released s3://encode-public/2015/10/02/33b3cb49-23c6-47b9-8652-95be423c9517/ENCFF793FTX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF353FKI bigWig bigWig read-depth normalized signal ce10 ENCSR200IVZ Control ChIP-seq /worm-donors/ENCDO658BSS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177938/'], '@type': ['Target', 'Item'], 'name': 'mec-3-celegans', 'label': 'mec-3', '@id': '/targets/mec-3-celegans/', 'title': 'mec-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '57457cbd-f7cd-4efb-bea3-657979f4afad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF423UUH/ 9976095 Kevin White, UChicago 9275eab8b17106f77ad50d0032061233 https://www.encodeproject.org/files/ENCFF353FKI/@@download/ENCFF353FKI.bigWig released s3://encode-public/2015/10/02/0c88c5ca-c210-4b1f-8705-56f3f2e231ab/ENCFF353FKI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF200SMA bam bam alignments ce11 ENCSR200IVZ Control ChIP-seq /worm-donors/ENCDO658BSS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177938/'], '@type': ['Target', 'Item'], 'name': 'mec-3-celegans', 'label': 'mec-3', '@id': '/targets/mec-3-celegans/', 'title': 'mec-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '57457cbd-f7cd-4efb-bea3-657979f4afad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF435KAH/ 711845134 Kevin White, UChicago 36a1ebd1880bb90caa4ff3110950ab19 https://www.encodeproject.org/files/ENCFF200SMA/@@download/ENCFF200SMA.bam released s3://encode-public/2016/01/19/6816370f-b114-4d53-8a5d-568357c04b64/ENCFF200SMA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF882QSU bigWig bigWig signal of unique reads ce11 ENCSR200IVZ Control ChIP-seq /worm-donors/ENCDO658BSS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177938/'], '@type': ['Target', 'Item'], 'name': 'mec-3-celegans', 'label': 'mec-3', '@id': '/targets/mec-3-celegans/', 'title': 'mec-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '57457cbd-f7cd-4efb-bea3-657979f4afad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF200SMA/ 9966959 Kevin White, UChicago 1746f86361f0028f4987f1bc36f0b110 https://www.encodeproject.org/files/ENCFF882QSU/@@download/ENCFF882QSU.bigWig released s3://encode-public/2016/02/03/2ab1e930-ca12-4185-97ff-2a2705df45dd/ENCFF882QSU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF180RSK bigWig bigWig read-depth normalized signal ce11 ENCSR200IVZ Control ChIP-seq /worm-donors/ENCDO658BSS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177938/'], '@type': ['Target', 'Item'], 'name': 'mec-3-celegans', 'label': 'mec-3', '@id': '/targets/mec-3-celegans/', 'title': 'mec-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '57457cbd-f7cd-4efb-bea3-657979f4afad', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF200SMA/ 9976955 Kevin White, UChicago e75de3e45d6f0f4a175e58b23d786445 https://www.encodeproject.org/files/ENCFF180RSK/@@download/ENCFF180RSK.bigWig released s3://encode-public/2016/02/03/7958809e-c352-4523-abb5-5266918d6ba5/ENCFF180RSK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF392QZQ tagAlign tagAlign alignments hg19 ENCSR985BHU Control ChIP-seq CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 223060964 Anshul Kundaje, Stanford b8b7878da800b2b05c8cbd06b51f5840 https://www.encodeproject.org/files/ENCFF392QZQ/@@download/ENCFF392QZQ.tagAlign.gz archived s3://encode-public/2016/03/30/23ced384-21c0-4cee-96b8-edba5ebe64f6/ENCFF392QZQ.tagAlign.gz Lab custom hg19 released ENCFF430MCG fastq fastq reads ENCSR767ZKR Control ChIP-seq /worm-donors/ENCDO574IXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191615/'], '@type': ['Target', 'Item'], 'name': 'ceh-2-celegans', 'label': 'ceh-2', '@id': '/targets/ceh-2-celegans/', 'title': 'ceh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d745153-12fc-40ab-82ff-8780227436a7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 492992799 Kevin White, UChicago e3b3e023a221a57c0fa15df9290b4eb0 https://www.encodeproject.org/files/ENCFF430MCG/@@download/ENCFF430MCG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/45dcc3b4-2ccb-4492-acb8-004d2a2fa121/ENCFF430MCG.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF686HNM bam bam alignments ce10 ENCSR767ZKR Control ChIP-seq /worm-donors/ENCDO574IXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191615/'], '@type': ['Target', 'Item'], 'name': 'ceh-2-celegans', 'label': 'ceh-2', '@id': '/targets/ceh-2-celegans/', 'title': 'ceh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d745153-12fc-40ab-82ff-8780227436a7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF430MCG/ 714041762 Kevin White, UChicago ee52feb3c2974fda9d012b199f79cb02 https://www.encodeproject.org/files/ENCFF686HNM/@@download/ENCFF686HNM.bam released s3://encode-public/2015/08/19/0d11f0f5-07d3-4a54-9970-f279a711881a/ENCFF686HNM.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF485JWX bigWig bigWig signal of unique reads ce10 ENCSR767ZKR Control ChIP-seq /worm-donors/ENCDO574IXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191615/'], '@type': ['Target', 'Item'], 'name': 'ceh-2-celegans', 'label': 'ceh-2', '@id': '/targets/ceh-2-celegans/', 'title': 'ceh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d745153-12fc-40ab-82ff-8780227436a7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF686HNM/ 9955666 Kevin White, UChicago de67e93d2270b3185efcb828d7e4cefb https://www.encodeproject.org/files/ENCFF485JWX/@@download/ENCFF485JWX.bigWig released s3://encode-public/2015/10/02/2a961dd5-aa61-4f5e-bdcf-d78f1354bcf1/ENCFF485JWX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF334ZNZ bigWig bigWig read-depth normalized signal ce10 ENCSR767ZKR Control ChIP-seq /worm-donors/ENCDO574IXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191615/'], '@type': ['Target', 'Item'], 'name': 'ceh-2-celegans', 'label': 'ceh-2', '@id': '/targets/ceh-2-celegans/', 'title': 'ceh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d745153-12fc-40ab-82ff-8780227436a7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF686HNM/ 9959620 Kevin White, UChicago 16939ea866cc4a39c7638971205324e9 https://www.encodeproject.org/files/ENCFF334ZNZ/@@download/ENCFF334ZNZ.bigWig released s3://encode-public/2015/10/02/b2c2408c-aae5-47c6-8b4b-462b71445ff1/ENCFF334ZNZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF008YUQ bam bam alignments ce11 ENCSR767ZKR Control ChIP-seq /worm-donors/ENCDO574IXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191615/'], '@type': ['Target', 'Item'], 'name': 'ceh-2-celegans', 'label': 'ceh-2', '@id': '/targets/ceh-2-celegans/', 'title': 'ceh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d745153-12fc-40ab-82ff-8780227436a7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF430MCG/ 714654553 Kevin White, UChicago df9babf1f4211d4cc57b16bc8832126e https://www.encodeproject.org/files/ENCFF008YUQ/@@download/ENCFF008YUQ.bam released s3://encode-public/2016/01/15/910ded7c-5ae5-4afc-89d3-27d425102f1c/ENCFF008YUQ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF502LNZ bigWig bigWig signal of unique reads ce11 ENCSR767ZKR Control ChIP-seq /worm-donors/ENCDO574IXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191615/'], '@type': ['Target', 'Item'], 'name': 'ceh-2-celegans', 'label': 'ceh-2', '@id': '/targets/ceh-2-celegans/', 'title': 'ceh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d745153-12fc-40ab-82ff-8780227436a7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF008YUQ/ 9953423 Kevin White, UChicago 32c489fdbc7cc0ea2476dbebce4269cd https://www.encodeproject.org/files/ENCFF502LNZ/@@download/ENCFF502LNZ.bigWig released s3://encode-public/2016/02/03/ba696f0d-7f30-4159-91c2-f84926f7c8c2/ENCFF502LNZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF642WNS bigWig bigWig read-depth normalized signal ce11 ENCSR767ZKR Control ChIP-seq /worm-donors/ENCDO574IXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191615/'], '@type': ['Target', 'Item'], 'name': 'ceh-2-celegans', 'label': 'ceh-2', '@id': '/targets/ceh-2-celegans/', 'title': 'ceh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d745153-12fc-40ab-82ff-8780227436a7', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF008YUQ/ 9961191 Kevin White, UChicago a1c11a9fedf4ac17e8e87794d621f181 https://www.encodeproject.org/files/ENCFF642WNS/@@download/ENCFF642WNS.bigWig released s3://encode-public/2016/02/03/a6020f70-75a0-476f-8298-910485f0bf68/ENCFF642WNS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF287MMS fastq fastq reads ENCSR168MGM Control ChIP-seq /fly-donors/ENCDO007BBT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32663/'], '@type': ['Target', 'Item'], 'name': 'CG9609-dmelanogaster', 'label': 'CG9609', '@id': '/targets/CG9609-dmelanogaster/', 'title': 'CG9609 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f40a353e-7f5a-48ae-9a6c-dcdcbea69eca', 'status': 'released'} dm3 X 16666044 16689177 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 619529630 Kevin White, UChicago 346878763e4678579d9cc60a3cd2b4da https://www.encodeproject.org/files/ENCFF287MMS/@@download/ENCFF287MMS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/d0880f1c-2854-4894-9858-b754520171e9/ENCFF287MMS.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF018KZH bam bam alignments dm3 ENCSR168MGM Control ChIP-seq /fly-donors/ENCDO007BBT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32663/'], '@type': ['Target', 'Item'], 'name': 'CG9609-dmelanogaster', 'label': 'CG9609', '@id': '/targets/CG9609-dmelanogaster/', 'title': 'CG9609 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f40a353e-7f5a-48ae-9a6c-dcdcbea69eca', 'status': 'released'} dm3 X 16666044 16689177 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF287MMS/ 904395069 Kevin White, UChicago aea3502e9ae506eedd6497c65f3bd3fa https://www.encodeproject.org/files/ENCFF018KZH/@@download/ENCFF018KZH.bam released s3://encode-public/2015/08/03/12cfa608-d86c-4ad5-94be-f5afc8d63ce2/ENCFF018KZH.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF885CZK bigWig bigWig read-depth normalized signal dm3 ENCSR168MGM Control ChIP-seq /fly-donors/ENCDO007BBT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32663/'], '@type': ['Target', 'Item'], 'name': 'CG9609-dmelanogaster', 'label': 'CG9609', '@id': '/targets/CG9609-dmelanogaster/', 'title': 'CG9609 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f40a353e-7f5a-48ae-9a6c-dcdcbea69eca', 'status': 'released'} dm3 X 16666044 16689177 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF018KZH/ 15380095 Kevin White, UChicago 8d465150e291689d57a568cc6334efa7 https://www.encodeproject.org/files/ENCFF885CZK/@@download/ENCFF885CZK.bigWig released s3://encode-public/2015/10/05/8dfea118-68b2-4a9d-b820-f75939dd64b4/ENCFF885CZK.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF260NAZ bigWig bigWig signal of unique reads dm3 ENCSR168MGM Control ChIP-seq /fly-donors/ENCDO007BBT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32663/'], '@type': ['Target', 'Item'], 'name': 'CG9609-dmelanogaster', 'label': 'CG9609', '@id': '/targets/CG9609-dmelanogaster/', 'title': 'CG9609 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f40a353e-7f5a-48ae-9a6c-dcdcbea69eca', 'status': 'released'} dm3 X 16666044 16689177 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF018KZH/ 15347044 Kevin White, UChicago 6d2f3b986a4845e5a2b081e7f977d77a https://www.encodeproject.org/files/ENCFF260NAZ/@@download/ENCFF260NAZ.bigWig released s3://encode-public/2015/10/05/9e432882-8910-46ea-9a3b-c46314886ec6/ENCFF260NAZ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF359NYA bam bam alignments dm6 ENCSR168MGM Control ChIP-seq /fly-donors/ENCDO007BBT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32663/'], '@type': ['Target', 'Item'], 'name': 'CG9609-dmelanogaster', 'label': 'CG9609', '@id': '/targets/CG9609-dmelanogaster/', 'title': 'CG9609 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f40a353e-7f5a-48ae-9a6c-dcdcbea69eca', 'status': 'released'} dm3 X 16666044 16689177 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF287MMS/ 901932491 Kevin White, UChicago 33770ea29706f5feecc16736bfe9f615 https://www.encodeproject.org/files/ENCFF359NYA/@@download/ENCFF359NYA.bam released s3://encode-public/2016/04/21/17e3a459-1662-44bd-bc74-5ee780e42ecf/ENCFF359NYA.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF217YKY bigWig bigWig read-depth normalized signal dm6 ENCSR168MGM Control ChIP-seq /fly-donors/ENCDO007BBT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32663/'], '@type': ['Target', 'Item'], 'name': 'CG9609-dmelanogaster', 'label': 'CG9609', '@id': '/targets/CG9609-dmelanogaster/', 'title': 'CG9609 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f40a353e-7f5a-48ae-9a6c-dcdcbea69eca', 'status': 'released'} dm3 X 16666044 16689177 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF359NYA/ 17497672 Kevin White, UChicago 8977cd9416ea30a3f8aae2a96f8ea313 https://www.encodeproject.org/files/ENCFF217YKY/@@download/ENCFF217YKY.bigWig released s3://encode-public/2016/06/20/4316204e-abaa-4a0d-a433-1647bf67219f/ENCFF217YKY.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF162PJU bigWig bigWig signal of unique reads dm6 ENCSR168MGM Control ChIP-seq /fly-donors/ENCDO007BBT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32663/'], '@type': ['Target', 'Item'], 'name': 'CG9609-dmelanogaster', 'label': 'CG9609', '@id': '/targets/CG9609-dmelanogaster/', 'title': 'CG9609 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f40a353e-7f5a-48ae-9a6c-dcdcbea69eca', 'status': 'released'} dm3 X 16666044 16689177 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF359NYA/ 17443961 Kevin White, UChicago ae1c29cd89460ae9a7c1ce86af0697a4 https://www.encodeproject.org/files/ENCFF162PJU/@@download/ENCFF162PJU.bigWig released s3://encode-public/2016/06/20/23a2372b-de22-44f1-a056-9df2b472b383/ENCFF162PJU.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF878QGK fastq fastq reads ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 75485844 Kevin White, UChicago a5284c2403fff92bb38a9a47b06f24bf https://www.encodeproject.org/files/ENCFF878QGK/@@download/ENCFF878QGK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/30/fdc59548-201e-4b9b-a700-2d2567c1ac5b/ENCFF878QGK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF787XNO fastq fastq reads ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 890548318 Kevin White, UChicago f010484a7317a64a9d23a8ab1a1ebd0d https://www.encodeproject.org/files/ENCFF787XNO/@@download/ENCFF787XNO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/30/1bd7cd80-8cc9-4662-9e1b-9cfe566b5d43/ENCFF787XNO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF050DVK bam bam alignments ce10 ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF878QGK/, /files/ENCFF787XNO/ 1361160557 Kevin White, UChicago e8fecac7f697d7d600eb2c9baf57b899 https://www.encodeproject.org/files/ENCFF050DVK/@@download/ENCFF050DVK.bam released s3://encode-public/2015/08/19/0f992b2c-b20a-438a-aac4-590141a79a73/ENCFF050DVK.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF323ABR bigWig bigWig signal of unique reads ce10 ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF050DVK/ 10034188 Kevin White, UChicago 207e3ccd531fd5b3e89ba2791224e0a0 https://www.encodeproject.org/files/ENCFF323ABR/@@download/ENCFF323ABR.bigWig released s3://encode-public/2015/10/02/1abd4b07-8da6-452c-b2fa-951e3b75cdc3/ENCFF323ABR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF086JNS bigWig bigWig read-depth normalized signal ce10 ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF050DVK/ 10040311 Kevin White, UChicago 33c3fe8c2b84f4c8ad2aa519af594d17 https://www.encodeproject.org/files/ENCFF086JNS/@@download/ENCFF086JNS.bigWig released s3://encode-public/2015/10/02/0ca38483-f817-4baa-b11f-3f65271eca11/ENCFF086JNS.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF676TMZ bam bam alignments ce11 ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF878QGK/, /files/ENCFF787XNO/ 1362400215 Kevin White, UChicago b5b3bd1b689a3ebc352bc06984107d7e https://www.encodeproject.org/files/ENCFF676TMZ/@@download/ENCFF676TMZ.bam released s3://encode-public/2016/01/15/4cba9da0-f09c-47ca-a68e-fb95655b2c6b/ENCFF676TMZ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF485YCF bigWig bigWig signal of unique reads ce11 ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF676TMZ/ 10031658 Kevin White, UChicago 5a374b6a3481cdbc0841a860988410c2 https://www.encodeproject.org/files/ENCFF485YCF/@@download/ENCFF485YCF.bigWig released s3://encode-public/2016/02/03/bf4283df-e7b4-4159-8544-36b377895ed1/ENCFF485YCF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF116HCV bigWig bigWig read-depth normalized signal ce11 ENCSR190ONG Control ChIP-seq /worm-donors/ENCDO643BDK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181599/'], '@type': ['Target', 'Item'], 'name': 'dsc-1-celegans', 'label': 'dsc-1', '@id': '/targets/dsc-1-celegans/', 'title': 'dsc-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b691696c-1da9-4242-b463-bdbff2e97551', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF676TMZ/ 10043394 Kevin White, UChicago a75953ef38f306da4908349fc7bdc355 https://www.encodeproject.org/files/ENCFF116HCV/@@download/ENCFF116HCV.bigWig released s3://encode-public/2016/02/03/68e711fa-ff72-4533-b4e3-17b48f31404d/ENCFF116HCV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF001HJK bigWig bigWig raw signal hg19 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HJL/ 237805196 John Stamatoyannopoulos, UW c01908f0bb3a07e47e81c51025108f76 https://www.encodeproject.org/files/ENCFF001HJK/@@download/ENCFF001HJK.bigWig archived s3://encode-public/2011/06/25/a25a6f3d-84cb-400f-8623-f7ac96deb6ab/ENCFF001HJK.bigWig Lab custom hg19 archived low read length ENCFF001HJL bam bam alignments hg19 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HJV/ 1209529406 John Stamatoyannopoulos, UW 7898c19965155ba7502fb48b47cb83b0 https://www.encodeproject.org/files/ENCFF001HJL/@@download/ENCFF001HJL.bam archived s3://encode-public/2011/06/25/faf16eb6-a04b-4f16-b2c3-7bc9d33e5c6c/ENCFF001HJL.bam Lab custom hg19 archived low read length ENCFF001HJV fastq fastq reads ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1262263528 John Stamatoyannopoulos, UW da078d73fad564ddd7efc8552e1b0af6 https://www.encodeproject.org/files/ENCFF001HJV/@@download/ENCFF001HJV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/e5004a3f-1add-469b-9310-3c7d61c9bdcd/ENCFF001HJV.fastq.gz low read length ENCFF033LOS bam bam unfiltered alignments GRCh38 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HJV/, /files/ENCFF643CGH/ 1541382776 ENCODE Processing Pipeline b4450d9a16fdd9b6933a95f6f045e7ce https://www.encodeproject.org/files/ENCFF033LOS/@@download/ENCFF033LOS.bam released s3://encode-public/2016/08/09/fbe00485-9051-4d0b-9cf7-f54328b0859b/ENCFF033LOS.bam ENCODE3 GRCh38 archived low read length ENCFF336OEL bam bam alignments GRCh38 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HJV/, /files/ENCFF643CGH/ 1111069077 ENCODE Processing Pipeline 562c115e57c91b655525437cf9b681f9 https://www.encodeproject.org/files/ENCFF336OEL/@@download/ENCFF336OEL.bam released s3://encode-public/2016/08/09/2391a753-a9b3-4bbf-a451-d93b411d6fc7/ENCFF336OEL.bam ENCODE3 GRCh38 archived low read length ENCFF645ZPA bam bam unfiltered alignments hg19 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HJV/, /files/ENCFF807MUK/ 1532691726 ENCODE Processing Pipeline dbedd4cb7b7ebe4b957b7c06547b460b https://www.encodeproject.org/files/ENCFF645ZPA/@@download/ENCFF645ZPA.bam released s3://encode-public/2016/11/13/1b8e6b7d-029f-42f5-b48e-4a8bdf0073ea/ENCFF645ZPA.bam ENCODE3 hg19 archived low read length ENCFF686TPQ bam bam alignments hg19 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HJV/, /files/ENCFF807MUK/ 1111402849 ENCODE Processing Pipeline a4510065f996d1c189fe8b22ee4216cb https://www.encodeproject.org/files/ENCFF686TPQ/@@download/ENCFF686TPQ.bam released s3://encode-public/2016/11/13/c2eeeee4-b1f3-413e-b9f7-5b68af20fe6d/ENCFF686TPQ.bam ENCODE3 hg19 archived low read length ENCFF388EIJ bam bam unfiltered alignments GRCh38 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HJV/ 1505746055 ENCODE Processing Pipeline 4124e2a7217cbff5554c13933c183100 https://www.encodeproject.org/files/ENCFF388EIJ/@@download/ENCFF388EIJ.bam released s3://encode-public/2020/09/03/7520a521-1183-454b-bdd6-1e3fdb77877d/ENCFF388EIJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF070CGS bam bam alignments GRCh38 ENCSR000DSV Control ChIP-seq /human-donors/ENCDO224AAA/ CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HJV/ 1207593520 ENCODE Processing Pipeline 58153935f4cc0525fe8c13ebab30b61b https://www.encodeproject.org/files/ENCFF070CGS/@@download/ENCFF070CGS.bam released s3://encode-public/2020/09/03/44ead3f4-5f6a-4c3b-9a42-ce972cae1784/ENCFF070CGS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF581YZP fastq fastq reads ENCSR420ZTI Control ChIP-seq /worm-donors/ENCDO729RSE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184285/'], '@type': ['Target', 'Item'], 'name': 'F10B5.3-celegans', 'label': 'F10B5.3', '@id': '/targets/F10B5.3-celegans/', 'title': 'F10B5.3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0732ae51-98ce-4ae2-80a4-9205e78980be', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 729159666 Kevin White, UChicago b7639e6476ed41ee1fc9fab72e8308be https://www.encodeproject.org/files/ENCFF581YZP/@@download/ENCFF581YZP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/343f5d13-7003-4fb9-ab61-895d93e12c29/ENCFF581YZP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF192YYP bam bam alignments ce10 ENCSR420ZTI Control ChIP-seq /worm-donors/ENCDO729RSE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184285/'], '@type': ['Target', 'Item'], 'name': 'F10B5.3-celegans', 'label': 'F10B5.3', '@id': '/targets/F10B5.3-celegans/', 'title': 'F10B5.3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0732ae51-98ce-4ae2-80a4-9205e78980be', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF581YZP/ 1044481344 Kevin White, UChicago 96d0fc52cbd154e6bd63cf07c5789edc https://www.encodeproject.org/files/ENCFF192YYP/@@download/ENCFF192YYP.bam released s3://encode-public/2015/08/19/82e264e8-79ac-495e-a7b8-3c2c678e1c11/ENCFF192YYP.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF488JDX bigWig bigWig signal of unique reads ce10 ENCSR420ZTI Control ChIP-seq /worm-donors/ENCDO729RSE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184285/'], '@type': ['Target', 'Item'], 'name': 'F10B5.3-celegans', 'label': 'F10B5.3', '@id': '/targets/F10B5.3-celegans/', 'title': 'F10B5.3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0732ae51-98ce-4ae2-80a4-9205e78980be', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF192YYP/ 9981009 Kevin White, UChicago b2b9ee5fbebe8ba1c5dfa74af0f77947 https://www.encodeproject.org/files/ENCFF488JDX/@@download/ENCFF488JDX.bigWig released s3://encode-public/2015/10/02/a07fc452-c057-4905-8a29-bccd8aee1e68/ENCFF488JDX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF073KOV bigWig bigWig read-depth normalized signal ce10 ENCSR420ZTI Control ChIP-seq /worm-donors/ENCDO729RSE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184285/'], '@type': ['Target', 'Item'], 'name': 'F10B5.3-celegans', 'label': 'F10B5.3', '@id': '/targets/F10B5.3-celegans/', 'title': 'F10B5.3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0732ae51-98ce-4ae2-80a4-9205e78980be', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF192YYP/ 10033153 Kevin White, UChicago a211b080550eb58c6ea1cb6e84e9b9e4 https://www.encodeproject.org/files/ENCFF073KOV/@@download/ENCFF073KOV.bigWig released s3://encode-public/2015/10/02/17f13f7d-dcb6-4fac-8f77-af6fa66feb0d/ENCFF073KOV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF277SVG bam bam alignments ce11 ENCSR420ZTI Control ChIP-seq /worm-donors/ENCDO729RSE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184285/'], '@type': ['Target', 'Item'], 'name': 'F10B5.3-celegans', 'label': 'F10B5.3', '@id': '/targets/F10B5.3-celegans/', 'title': 'F10B5.3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0732ae51-98ce-4ae2-80a4-9205e78980be', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF581YZP/ 1045355784 Kevin White, UChicago 8be574ad7d9777a49f8a0a6157a9a522 https://www.encodeproject.org/files/ENCFF277SVG/@@download/ENCFF277SVG.bam released s3://encode-public/2016/01/16/a76103cf-1fd5-4cce-b742-041ee35fb93e/ENCFF277SVG.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF592QNT bigWig bigWig signal of unique reads ce11 ENCSR420ZTI Control ChIP-seq /worm-donors/ENCDO729RSE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184285/'], '@type': ['Target', 'Item'], 'name': 'F10B5.3-celegans', 'label': 'F10B5.3', '@id': '/targets/F10B5.3-celegans/', 'title': 'F10B5.3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0732ae51-98ce-4ae2-80a4-9205e78980be', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF277SVG/ 9977858 Kevin White, UChicago c3639dfcbbd1cff0e18964017575c7c8 https://www.encodeproject.org/files/ENCFF592QNT/@@download/ENCFF592QNT.bigWig released s3://encode-public/2016/02/03/a758ab3d-0609-4e20-8064-8a40115ac943/ENCFF592QNT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF728AAY bigWig bigWig read-depth normalized signal ce11 ENCSR420ZTI Control ChIP-seq /worm-donors/ENCDO729RSE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184285/'], '@type': ['Target', 'Item'], 'name': 'F10B5.3-celegans', 'label': 'F10B5.3', '@id': '/targets/F10B5.3-celegans/', 'title': 'F10B5.3 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '0732ae51-98ce-4ae2-80a4-9205e78980be', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF277SVG/ 10023568 Kevin White, UChicago d02e5f11b05bc1356b4232178ba8b28c https://www.encodeproject.org/files/ENCFF728AAY/@@download/ENCFF728AAY.bigWig released s3://encode-public/2016/02/03/e2d4fa1a-436b-4f86-9354-59c04f0db2c6/ENCFF728AAY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF403LQB fastq fastq reads ENCSR835UJD Control ChIP-seq /fly-donors/ENCDO274ORI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34177/'], '@type': ['Target', 'Item'], 'name': 'fu2-dmelanogaster', 'label': 'fu2', '@id': '/targets/fu2-dmelanogaster/', 'title': 'fu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '02d431fe-49c8-409a-ba20-7d1bb06b1e5d', 'status': 'released'} dm3 2L 8463239 8487464 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 499614712 Kevin White, UChicago da215b0ca409e8679eef1526b1c40a63 https://www.encodeproject.org/files/ENCFF403LQB/@@download/ENCFF403LQB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/1c695a31-ad27-4040-9124-d712b8b49bfa/ENCFF403LQB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF645BGQ bam bam alignments dm3 ENCSR835UJD Control ChIP-seq /fly-donors/ENCDO274ORI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34177/'], '@type': ['Target', 'Item'], 'name': 'fu2-dmelanogaster', 'label': 'fu2', '@id': '/targets/fu2-dmelanogaster/', 'title': 'fu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '02d431fe-49c8-409a-ba20-7d1bb06b1e5d', 'status': 'released'} dm3 2L 8463239 8487464 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF403LQB/ 732354970 Kevin White, UChicago ccaa4d52e983860ab72ae026849fcc47 https://www.encodeproject.org/files/ENCFF645BGQ/@@download/ENCFF645BGQ.bam released s3://encode-public/2015/08/03/f9e5a731-127b-4fbd-acc1-05442dffdb72/ENCFF645BGQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF699WUW bigWig bigWig read-depth normalized signal dm3 ENCSR835UJD Control ChIP-seq /fly-donors/ENCDO274ORI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34177/'], '@type': ['Target', 'Item'], 'name': 'fu2-dmelanogaster', 'label': 'fu2', '@id': '/targets/fu2-dmelanogaster/', 'title': 'fu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '02d431fe-49c8-409a-ba20-7d1bb06b1e5d', 'status': 'released'} dm3 2L 8463239 8487464 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF645BGQ/ 15398240 Kevin White, UChicago 6ef2d0f8e42ba281747507e8140bd195 https://www.encodeproject.org/files/ENCFF699WUW/@@download/ENCFF699WUW.bigWig released s3://encode-public/2015/10/05/861b9d5f-80dd-4a26-b8c7-951c06271900/ENCFF699WUW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF725NTC bigWig bigWig signal of unique reads dm3 ENCSR835UJD Control ChIP-seq /fly-donors/ENCDO274ORI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34177/'], '@type': ['Target', 'Item'], 'name': 'fu2-dmelanogaster', 'label': 'fu2', '@id': '/targets/fu2-dmelanogaster/', 'title': 'fu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '02d431fe-49c8-409a-ba20-7d1bb06b1e5d', 'status': 'released'} dm3 2L 8463239 8487464 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF645BGQ/ 15367123 Kevin White, UChicago ad5e18e16d7f003e2de282b92b4f870b https://www.encodeproject.org/files/ENCFF725NTC/@@download/ENCFF725NTC.bigWig released s3://encode-public/2015/10/05/5f760702-9163-4c9e-94b9-c035a04eb51a/ENCFF725NTC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF310JHB bam bam alignments dm6 ENCSR835UJD Control ChIP-seq /fly-donors/ENCDO274ORI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34177/'], '@type': ['Target', 'Item'], 'name': 'fu2-dmelanogaster', 'label': 'fu2', '@id': '/targets/fu2-dmelanogaster/', 'title': 'fu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '02d431fe-49c8-409a-ba20-7d1bb06b1e5d', 'status': 'released'} dm3 2L 8463239 8487464 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF403LQB/ 729959813 Kevin White, UChicago 9858d3da2eb67a508a431ebbfa5cda9a https://www.encodeproject.org/files/ENCFF310JHB/@@download/ENCFF310JHB.bam released s3://encode-public/2016/04/21/4de15943-21d1-4a92-a854-57b9a953a00c/ENCFF310JHB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF797CXW bigWig bigWig signal of unique reads dm6 ENCSR835UJD Control ChIP-seq /fly-donors/ENCDO274ORI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34177/'], '@type': ['Target', 'Item'], 'name': 'fu2-dmelanogaster', 'label': 'fu2', '@id': '/targets/fu2-dmelanogaster/', 'title': 'fu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '02d431fe-49c8-409a-ba20-7d1bb06b1e5d', 'status': 'released'} dm3 2L 8463239 8487464 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF310JHB/ 17469333 Kevin White, UChicago 51e2c544dea5f80dea7ba11323608075 https://www.encodeproject.org/files/ENCFF797CXW/@@download/ENCFF797CXW.bigWig released s3://encode-public/2016/06/21/d69d82d4-3d30-42e1-8573-5238305d4935/ENCFF797CXW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF485VGD bigWig bigWig read-depth normalized signal dm6 ENCSR835UJD Control ChIP-seq /fly-donors/ENCDO274ORI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34177/'], '@type': ['Target', 'Item'], 'name': 'fu2-dmelanogaster', 'label': 'fu2', '@id': '/targets/fu2-dmelanogaster/', 'title': 'fu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '02d431fe-49c8-409a-ba20-7d1bb06b1e5d', 'status': 'released'} dm3 2L 8463239 8487464 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF310JHB/ 17513376 Kevin White, UChicago 06382e065a5e3f68996d531663259634 https://www.encodeproject.org/files/ENCFF485VGD/@@download/ENCFF485VGD.bigWig released s3://encode-public/2016/06/21/5b1bfdf5-9ce6-4ae1-9d47-3616d5531c08/ENCFF485VGD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001ZUZ fastq fastq reads ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 822738783 Bing Ren, UCSD 5f7535d095e052a6f2fda848df9607d9 SRA:SRR3653312 https://www.encodeproject.org/files/ENCFF001ZUZ/@@download/ENCFF001ZUZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/d3e0c9ac-9ece-4477-b1eb-5f2b29efc5e7/ENCFF001ZUZ.fastq.gz low read depth, low read length ENCFF001ZVA fastq fastq reads ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 582241592 Bing Ren, UCSD 14d62956b87ce710e9e1b08730ec05a3 SRA:SRR3653311 https://www.encodeproject.org/files/ENCFF001ZVA/@@download/ENCFF001ZVA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/e462e9b6-c336-4f49-a378-df8da0209af7/ENCFF001ZVA.fastq.gz low read depth, low read length ENCFF120JKA bam bam unfiltered alignments mm10-minimal ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF001ZVA/, /files/ENCFF806TVZ/ 763603449 ENCODE Processing Pipeline b15da1252d39a6b31bea6e010dfaacbd https://www.encodeproject.org/files/ENCFF120JKA/@@download/ENCFF120JKA.bam archived s3://encode-public/2015/02/09/73216019-299c-4b7d-b514-c52b4e8d047d/ENCFF120JKA.bam low read depth, low read length ENCFF248KDL bam bam unfiltered alignments mm10-minimal ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUZ/ 1077328564 ENCODE Processing Pipeline 43ec34571dd417e3766dd34b065ba44a https://www.encodeproject.org/files/ENCFF248KDL/@@download/ENCFF248KDL.bam archived s3://encode-public/2015/02/09/1323e89f-1bf5-40ef-aa28-c301d27e89d4/ENCFF248KDL.bam low read depth, low read length ENCFF976TWF bam bam alignments mm10-minimal ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUZ/ 682476241 ENCODE Processing Pipeline 3368162ed2a61591c8cf7be6cf2fa52a https://www.encodeproject.org/files/ENCFF976TWF/@@download/ENCFF976TWF.bam archived s3://encode-public/2015/03/11/11ddc7f4-abbb-400a-8e44-546764433512/ENCFF976TWF.bam low read depth, low read length ENCFF223QEB bam bam alignments mm10-minimal ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF001ZVA/, /files/ENCFF806TVZ/ 474513933 ENCODE Processing Pipeline 32cdca1009dd6eeb20ee7b84c94361f2 https://www.encodeproject.org/files/ENCFF223QEB/@@download/ENCFF223QEB.bam archived s3://encode-public/2015/03/11/6773d586-ec21-496a-b4c6-c025aaecba7b/ENCFF223QEB.bam low read depth, low read length ENCFF903TSE bam bam alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUZ/ 682250924 ENCODE Processing Pipeline 38278a6409ec72ea29be3d635faa2c59 https://www.encodeproject.org/files/ENCFF903TSE/@@download/ENCFF903TSE.bam released s3://encode-public/2016/05/20/4377310f-00d3-40f4-9e43-a8e0b265274f/ENCFF903TSE.bam ENCODE3 mm10 archived low read depth, low read length ENCFF116BMN bam bam unfiltered alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUZ/ 1078862162 ENCODE Processing Pipeline 72eae212b4e0d723afe0991747a07066 https://www.encodeproject.org/files/ENCFF116BMN/@@download/ENCFF116BMN.bam released s3://encode-public/2016/05/20/dade5210-c4cd-4440-b842-48e3c9b726e9/ENCFF116BMN.bam ENCODE3 mm10 archived low read depth, low read length ENCFF563TGK bam bam alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZVA/ 474349835 ENCODE Processing Pipeline 2f01ae3847824ac1c25cf048aa03f34e https://www.encodeproject.org/files/ENCFF563TGK/@@download/ENCFF563TGK.bam released s3://encode-public/2016/05/20/801cc126-5cce-49f6-8b9b-728f776b70aa/ENCFF563TGK.bam ENCODE3 mm10 archived low read depth, low read length ENCFF483NBZ bam bam unfiltered alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZVA/ 764724952 ENCODE Processing Pipeline a63665fad3d12d12efb992998ffc60ec https://www.encodeproject.org/files/ENCFF483NBZ/@@download/ENCFF483NBZ.bam released s3://encode-public/2016/05/20/3b27cf40-11b8-482d-ad99-fbbfb0ffc34c/ENCFF483NBZ.bam ENCODE3 mm10 archived low read depth, low read length ENCFF435PDB bam bam unfiltered alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZVA/ 744271279 ENCODE Processing Pipeline 98cc498593eb6a2079a11d87690701c8 https://www.encodeproject.org/files/ENCFF435PDB/@@download/ENCFF435PDB.bam released s3://encode-public/2020/10/07/aa4c017a-a8c6-4913-9ebe-dee1dca97f43/ENCFF435PDB.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF043UKQ bam bam unfiltered alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUZ/ 1049120552 ENCODE Processing Pipeline eca1a106b5cb1197c742fe3067c0ff83 https://www.encodeproject.org/files/ENCFF043UKQ/@@download/ENCFF043UKQ.bam released s3://encode-public/2020/10/07/2c56f907-4410-4eaa-8bd6-93da84263b57/ENCFF043UKQ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF693IQX bam bam alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZVA/ 509360827 ENCODE Processing Pipeline aacdc66a809b477ec2c903782180092e https://www.encodeproject.org/files/ENCFF693IQX/@@download/ENCFF693IQX.bam released s3://encode-public/2020/10/07/aa220fd9-ab71-4a7d-bb05-015944c442dd/ENCFF693IQX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF681ZBY bam bam alignments mm10 ENCSR949ZLW Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUZ/ 732215308 ENCODE Processing Pipeline ff1c0c0d4fc05b8cefa5c90fd7c3f4f9 https://www.encodeproject.org/files/ENCFF681ZBY/@@download/ENCFF681ZBY.bam released s3://encode-public/2020/10/07/9f1b714d-a305-485b-b01b-c7dba3aa4220/ENCFF681ZBY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF000VWN bigWig bigWig signal hg19 ENCSR000EYX Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 302716075 Sherman Weissman, Yale 51a897284454a8d4e9b95d8e09a4cea0 https://www.encodeproject.org/files/ENCFF000VWN/@@download/ENCFF000VWN.bigWig archived s3://encode-public/2010/12/02/d5b28f21-9c6c-46e4-ace4-e5541e4789d4/ENCFF000VWN.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth ENCFF000VWO bam bam alignments hg19 ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000VWV/ 462139262 Sherman Weissman, Yale ce073afcbc07afa343f2d4e4d07efeda https://www.encodeproject.org/files/ENCFF000VWO/@@download/ENCFF000VWO.bam archived s3://encode-public/2010/12/02/85cebb31-19cc-4431-8479-f202bc6acc2d/ENCFF000VWO.bam Lab custom hg19 archived insufficient read length, insufficient read depth ENCFF000VWV fastq fastq reads ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 344867857 Sherman Weissman, Yale c40922ec87437c215a95958439918168 https://www.encodeproject.org/files/ENCFF000VWV/@@download/ENCFF000VWV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/2900e561-e05a-41f4-8bc0-af27bb2fa737/ENCFF000VWV.fastq.gz insufficient read length, insufficient read depth ENCFF966PUO bam bam unfiltered alignments GRCh38 ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000VWV/ 464869425 ENCODE Processing Pipeline 1c6e491c756e782d95c34d0781be57f0 https://www.encodeproject.org/files/ENCFF966PUO/@@download/ENCFF966PUO.bam released s3://encode-public/2016/10/26/ee4b3600-48b7-47df-9295-c89387c387f0/ENCFF966PUO.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth ENCFF157YWH bam bam alignments GRCh38 ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF643CGH/, /files/ENCFF000VWV/ 283014804 ENCODE Processing Pipeline 5f625665d443fce5c438a1479161f87c https://www.encodeproject.org/files/ENCFF157YWH/@@download/ENCFF157YWH.bam released s3://encode-public/2016/10/26/fdee0fb7-a88c-4cfc-a041-552b06fa556a/ENCFF157YWH.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth ENCFF310LFT bam bam unfiltered alignments hg19 ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000VWV/ 463467586 ENCODE Processing Pipeline a8e16b6a1042f6656cfb46491468fa94 https://www.encodeproject.org/files/ENCFF310LFT/@@download/ENCFF310LFT.bam released s3://encode-public/2017/03/23/6c7538c7-5cba-4773-8a4b-ec92523b6287/ENCFF310LFT.bam ENCODE3 hg19 archived insufficient read length, insufficient read depth ENCFF420MOQ bam bam alignments hg19 ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF807MUK/, /files/ENCFF000VWV/ 278601715 ENCODE Processing Pipeline 07c8caa5be1d040eacc8241150b2aaf8 https://www.encodeproject.org/files/ENCFF420MOQ/@@download/ENCFF420MOQ.bam released s3://encode-public/2017/03/23/c9d13218-cdfa-48f0-b782-70ee85a91102/ENCFF420MOQ.bam ENCODE3 hg19 archived insufficient read length, insufficient read depth ENCFF906AMN bam bam unfiltered alignments GRCh38 ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWV/ 438427928 ENCODE Processing Pipeline ebd6237d7fb0b369b510dfc84934b9d8 https://www.encodeproject.org/files/ENCFF906AMN/@@download/ENCFF906AMN.bam released s3://encode-public/2020/09/03/61ea0690-5fa1-43c6-8549-2fc37a5f1c1e/ENCFF906AMN.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF658PBP bam bam alignments GRCh38 ENCSR000EYX Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VWV/ 290416413 ENCODE Processing Pipeline 4e1b948fe671dba91fde285b978ecb41 https://www.encodeproject.org/files/ENCFF658PBP/@@download/ENCFF658PBP.bam released s3://encode-public/2020/09/03/2c61e5d5-5836-4f09-aa9f-d26c3ddf42b9/ENCFF658PBP.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF754TPD fastq fastq reads ENCSR135XHQ Control ChIP-seq /fly-donors/ENCDO180QMH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39999/'], '@type': ['Target', 'Item'], 'name': 'Eip75B-dmelanogaster', 'label': 'Eip75B', '@id': '/targets/Eip75B-dmelanogaster/', 'title': 'Eip75B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65e931a9-29cf-4f25-b7e9-ef10a3c6b8a9', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 472449627 Kevin White, UChicago fbc4c45cea65e359879a438d26f92514 https://www.encodeproject.org/files/ENCFF754TPD/@@download/ENCFF754TPD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/507ebd36-4a3d-43a0-8269-8f7e6428e823/ENCFF754TPD.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF740SKA bam bam alignments dm3 ENCSR135XHQ Control ChIP-seq /fly-donors/ENCDO180QMH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39999/'], '@type': ['Target', 'Item'], 'name': 'Eip75B-dmelanogaster', 'label': 'Eip75B', '@id': '/targets/Eip75B-dmelanogaster/', 'title': 'Eip75B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65e931a9-29cf-4f25-b7e9-ef10a3c6b8a9', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF754TPD/ 680055164 Kevin White, UChicago d70c5ab84d1d851d633282c0fd76cfa0 https://www.encodeproject.org/files/ENCFF740SKA/@@download/ENCFF740SKA.bam released s3://encode-public/2015/10/06/dc4ce353-7c89-48fe-869a-4c8039f4b55f/ENCFF740SKA.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF595YRF bigWig bigWig read-depth normalized signal dm3 ENCSR135XHQ Control ChIP-seq /fly-donors/ENCDO180QMH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39999/'], '@type': ['Target', 'Item'], 'name': 'Eip75B-dmelanogaster', 'label': 'Eip75B', '@id': '/targets/Eip75B-dmelanogaster/', 'title': 'Eip75B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65e931a9-29cf-4f25-b7e9-ef10a3c6b8a9', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF740SKA/ 15095431 Kevin White, UChicago 4c2f6c44ed052cf73edd26ed13efe4e6 https://www.encodeproject.org/files/ENCFF595YRF/@@download/ENCFF595YRF.bigWig released s3://encode-public/2015/10/06/0778a5d5-f9c3-49ce-8501-5b3d3d4fd736/ENCFF595YRF.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF393KLK bigWig bigWig signal of unique reads dm3 ENCSR135XHQ Control ChIP-seq /fly-donors/ENCDO180QMH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39999/'], '@type': ['Target', 'Item'], 'name': 'Eip75B-dmelanogaster', 'label': 'Eip75B', '@id': '/targets/Eip75B-dmelanogaster/', 'title': 'Eip75B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65e931a9-29cf-4f25-b7e9-ef10a3c6b8a9', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF740SKA/ 15085170 Kevin White, UChicago c5e4429094cb46b3fe81e1be99543029 https://www.encodeproject.org/files/ENCFF393KLK/@@download/ENCFF393KLK.bigWig released s3://encode-public/2015/10/06/cd6e0669-ebf6-4e5d-b842-0463b723d212/ENCFF393KLK.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF536HPZ bam bam alignments dm6 ENCSR135XHQ Control ChIP-seq /fly-donors/ENCDO180QMH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39999/'], '@type': ['Target', 'Item'], 'name': 'Eip75B-dmelanogaster', 'label': 'Eip75B', '@id': '/targets/Eip75B-dmelanogaster/', 'title': 'Eip75B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65e931a9-29cf-4f25-b7e9-ef10a3c6b8a9', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF754TPD/ 678311576 Kevin White, UChicago 5966f4c3ac0e1fdf2e279681f014dafd https://www.encodeproject.org/files/ENCFF536HPZ/@@download/ENCFF536HPZ.bam released s3://encode-public/2016/04/21/ad0062de-ecdf-405d-bff8-25de8f1cc017/ENCFF536HPZ.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF217XJI bigWig bigWig signal of unique reads dm6 ENCSR135XHQ Control ChIP-seq /fly-donors/ENCDO180QMH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39999/'], '@type': ['Target', 'Item'], 'name': 'Eip75B-dmelanogaster', 'label': 'Eip75B', '@id': '/targets/Eip75B-dmelanogaster/', 'title': 'Eip75B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65e931a9-29cf-4f25-b7e9-ef10a3c6b8a9', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF536HPZ/ 17134992 Kevin White, UChicago eff02f4cfb4a265f428f30608bfc6d0b https://www.encodeproject.org/files/ENCFF217XJI/@@download/ENCFF217XJI.bigWig released s3://encode-public/2016/06/20/d341b0a0-3aef-4dc9-89aa-b2ebc8b5e6d6/ENCFF217XJI.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF348WDT bigWig bigWig read-depth normalized signal dm6 ENCSR135XHQ Control ChIP-seq /fly-donors/ENCDO180QMH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39999/'], '@type': ['Target', 'Item'], 'name': 'Eip75B-dmelanogaster', 'label': 'Eip75B', '@id': '/targets/Eip75B-dmelanogaster/', 'title': 'Eip75B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '65e931a9-29cf-4f25-b7e9-ef10a3c6b8a9', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF536HPZ/ 17144035 Kevin White, UChicago 5691aabfc4ceb74b3883fbf935688f84 https://www.encodeproject.org/files/ENCFF348WDT/@@download/ENCFF348WDT.bigWig released s3://encode-public/2016/06/20/46b6579e-1b2d-497e-9e5a-122db6ba7a18/ENCFF348WDT.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF771IYY fastq fastq reads ENCSR420LNH Control ChIP-seq /worm-donors/ENCDO738ZJK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184687/'], '@type': ['Target', 'Item'], 'name': 'ets-7-celegans', 'label': 'ets-7', '@id': '/targets/ets-7-celegans/', 'title': 'ets-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9f97da45-1312-42a1-bc60-f7ff4277265f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 304289258 Kevin White, UChicago b789ddcb59e0330141867254c7b8e871 https://www.encodeproject.org/files/ENCFF771IYY/@@download/ENCFF771IYY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/93b0bea1-ad57-4128-831e-c62f95626dd2/ENCFF771IYY.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF752RKV bam bam alignments ce10 ENCSR420LNH Control ChIP-seq /worm-donors/ENCDO738ZJK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184687/'], '@type': ['Target', 'Item'], 'name': 'ets-7-celegans', 'label': 'ets-7', '@id': '/targets/ets-7-celegans/', 'title': 'ets-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9f97da45-1312-42a1-bc60-f7ff4277265f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF771IYY/ 435796291 Kevin White, UChicago a5c72c6762c49a7d2f38d0a08aaceca6 https://www.encodeproject.org/files/ENCFF752RKV/@@download/ENCFF752RKV.bam released s3://encode-public/2015/08/19/a26d8114-3a68-4ac9-81d8-2a7363faa8d7/ENCFF752RKV.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF273NZL bigWig bigWig signal of unique reads ce10 ENCSR420LNH Control ChIP-seq /worm-donors/ENCDO738ZJK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184687/'], '@type': ['Target', 'Item'], 'name': 'ets-7-celegans', 'label': 'ets-7', '@id': '/targets/ets-7-celegans/', 'title': 'ets-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9f97da45-1312-42a1-bc60-f7ff4277265f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF752RKV/ 10033831 Kevin White, UChicago 1021eddbd3d5541173758a9e52cfdbf4 https://www.encodeproject.org/files/ENCFF273NZL/@@download/ENCFF273NZL.bigWig released s3://encode-public/2015/10/02/6a413708-26b1-4107-9d8f-2d0a0f6aa85e/ENCFF273NZL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF449SCX bigWig bigWig read-depth normalized signal ce10 ENCSR420LNH Control ChIP-seq /worm-donors/ENCDO738ZJK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184687/'], '@type': ['Target', 'Item'], 'name': 'ets-7-celegans', 'label': 'ets-7', '@id': '/targets/ets-7-celegans/', 'title': 'ets-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9f97da45-1312-42a1-bc60-f7ff4277265f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF752RKV/ 9977356 Kevin White, UChicago 9dcce31c3aab3a9e2aa8a48b3ee71c07 https://www.encodeproject.org/files/ENCFF449SCX/@@download/ENCFF449SCX.bigWig released s3://encode-public/2015/10/02/82474f3c-7ded-40e8-82be-5622cb4a64f0/ENCFF449SCX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF108ZFI bam bam alignments ce11 ENCSR420LNH Control ChIP-seq /worm-donors/ENCDO738ZJK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184687/'], '@type': ['Target', 'Item'], 'name': 'ets-7-celegans', 'label': 'ets-7', '@id': '/targets/ets-7-celegans/', 'title': 'ets-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9f97da45-1312-42a1-bc60-f7ff4277265f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF771IYY/ 436146568 Kevin White, UChicago dd597c03ffa50b98bfb68c00ed269bf3 https://www.encodeproject.org/files/ENCFF108ZFI/@@download/ENCFF108ZFI.bam released s3://encode-public/2016/01/20/51aab476-ee80-45e1-a7a5-57db7199e88e/ENCFF108ZFI.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF025IXL bigWig bigWig signal of unique reads ce11 ENCSR420LNH Control ChIP-seq /worm-donors/ENCDO738ZJK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184687/'], '@type': ['Target', 'Item'], 'name': 'ets-7-celegans', 'label': 'ets-7', '@id': '/targets/ets-7-celegans/', 'title': 'ets-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9f97da45-1312-42a1-bc60-f7ff4277265f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF108ZFI/ 10029852 Kevin White, UChicago 0505d08b779b81a4d5a5fb6034f4a639 https://www.encodeproject.org/files/ENCFF025IXL/@@download/ENCFF025IXL.bigWig released s3://encode-public/2016/02/03/67da4c2b-eb43-4fb5-b427-0ca0e506e798/ENCFF025IXL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF875TRJ bigWig bigWig read-depth normalized signal ce11 ENCSR420LNH Control ChIP-seq /worm-donors/ENCDO738ZJK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/184687/'], '@type': ['Target', 'Item'], 'name': 'ets-7-celegans', 'label': 'ets-7', '@id': '/targets/ets-7-celegans/', 'title': 'ets-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9f97da45-1312-42a1-bc60-f7ff4277265f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF108ZFI/ 9976418 Kevin White, UChicago 664182ca84d6932ff2c6d33af43cbd07 https://www.encodeproject.org/files/ENCFF875TRJ/@@download/ENCFF875TRJ.bigWig released s3://encode-public/2016/02/03/3d3a3965-7cdc-47fa-8683-44edbdfd6524/ENCFF875TRJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF000WKV bam bam alignments hg19 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WLF/ 196555573 Michael Snyder, Stanford 05b73169357021e24ebe237e307c7bdb https://www.encodeproject.org/files/ENCFF000WKV/@@download/ENCFF000WKV.bam archived s3://encode-public/2012/07/01/d5b762fa-4f30-4697-bcc0-b373e1299297/ENCFF000WKV.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WKW bam bam alignments hg19 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WLC/ 240182205 Michael Snyder, Stanford 667a3946278bf8a9462af442c928e4c7 https://www.encodeproject.org/files/ENCFF000WKW/@@download/ENCFF000WKW.bam archived s3://encode-public/2012/07/01/e8543cd6-d7cf-49db-b58c-924676b88ebd/ENCFF000WKW.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WKX bigWig bigWig signal hg19 ENCSR000EAV Control ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 287608375 Michael Snyder, Stanford 52de5dce8dc3e1844cf1d52fc62f156f https://www.encodeproject.org/files/ENCFF000WKX/@@download/ENCFF000WKX.bigWig archived s3://encode-public/2012/07/01/2765870a-0311-4f4e-8731-f5b64b57ef8f/ENCFF000WKX.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WLC fastq fastq reads ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 188570376 Michael Snyder, Stanford aa4a40decc1c5e79b70c84962bc4e0c5 https://www.encodeproject.org/files/ENCFF000WLC/@@download/ENCFF000WLC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/aed7330e-45b9-4bc8-ae80-a4418d00132b/ENCFF000WLC.fastq.gz insufficient read length extremely low read depth ENCFF000WLF fastq fastq reads ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 171362984 Michael Snyder, Stanford 5646d0d0bb1e9aa1f8904fade41b9411 https://www.encodeproject.org/files/ENCFF000WLF/@@download/ENCFF000WLF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/736b613d-537c-4b29-8247-f19f9e11a05a/ENCFF000WLF.fastq.gz insufficient read length extremely low read depth ENCFF786RCZ bam bam unfiltered alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WLC/ 241270582 ENCODE Processing Pipeline 04a1fb1ee22ad587dd569795c4943a1c https://www.encodeproject.org/files/ENCFF786RCZ/@@download/ENCFF786RCZ.bam released s3://encode-public/2016/10/26/c4bc05b5-a4ea-4c0d-844d-5cf345c2929f/ENCFF786RCZ.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF737DSB bam bam unfiltered alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WLF/, /files/ENCFF643CGH/ 197255160 ENCODE Processing Pipeline d199771b805389422857958332d8dfdc https://www.encodeproject.org/files/ENCFF737DSB/@@download/ENCFF737DSB.bam released s3://encode-public/2016/10/26/81f4bb5f-f42e-4420-8c8d-da1f8c140972/ENCFF737DSB.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF581JNH bam bam alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WLC/ 153873089 ENCODE Processing Pipeline 0fabc4ff1c658c2e1cf1ce5566e4e078 https://www.encodeproject.org/files/ENCFF581JNH/@@download/ENCFF581JNH.bam released s3://encode-public/2016/10/26/1f73fe16-6397-40fb-937a-1c3c11479472/ENCFF581JNH.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF890LJE bam bam alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WLF/, /files/ENCFF643CGH/ 75881178 ENCODE Processing Pipeline 6cebbf3a4ca2c5224d87f0ac512d698d https://www.encodeproject.org/files/ENCFF890LJE/@@download/ENCFF890LJE.bam released s3://encode-public/2016/10/26/fad66962-f8be-4285-8127-135e40da72fd/ENCFF890LJE.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF072TSA bam bam unfiltered alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WLC/, /files/ENCFF110MCL/ 228402289 ENCODE Processing Pipeline e5150c9addfdb56c4c9c64b76b0beac6 https://www.encodeproject.org/files/ENCFF072TSA/@@download/ENCFF072TSA.bam released s3://encode-public/2020/10/27/779137c6-c358-47fc-9188-4293d9d1faf2/ENCFF072TSA.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF320UEB bam bam unfiltered alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WLF/ 188285494 ENCODE Processing Pipeline 185e892abe558502013cbcaed493bb58 https://www.encodeproject.org/files/ENCFF320UEB/@@download/ENCFF320UEB.bam released s3://encode-public/2020/10/27/5ed3906f-fa8e-44c8-ada6-f52c72510599/ENCFF320UEB.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF529UHM bam bam alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WLF/ 75206634 ENCODE Processing Pipeline b6d4b12a26ad9bf2135bd21bb403413c https://www.encodeproject.org/files/ENCFF529UHM/@@download/ENCFF529UHM.bam released s3://encode-public/2020/10/27/9d838f91-64d0-4e05-a693-10e1605d7aa9/ENCFF529UHM.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF674PTN bam bam alignments GRCh38 ENCSR000EAV Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WLC/, /files/ENCFF110MCL/ 159042564 ENCODE Processing Pipeline fbcbb9bbc350310ff45e24a28b76cf33 https://www.encodeproject.org/files/ENCFF674PTN/@@download/ENCFF674PTN.bam released s3://encode-public/2020/10/27/34fa1235-bf02-4285-bfee-5ffbc9e2ffaa/ENCFF674PTN.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF000OJP bigWig bigWig raw signal hg19 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 2118972 Richard Myers, HAIB 5aed12e979aa6628d4afbfdd37d8a1fd https://www.encodeproject.org/files/ENCFF000OJP/@@download/ENCFF000OJP.bigWig archived s3://encode-public/2012/01/23/4c1fa782-13bd-4e6d-8ade-4da325567dd6/ENCFF000OJP.bigWig Lab custom hg19 archived low read length ENCFF000OJQ bam bam alignments hg19 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJZ/ 1081789719 Richard Myers, HAIB c0d2de40e367f3021ee6bff56f68dad9 https://www.encodeproject.org/files/ENCFF000OJQ/@@download/ENCFF000OJQ.bam archived s3://encode-public/2012/01/23/75d8efd8-883e-497d-b028-c55c65c52891/ENCFF000OJQ.bam Lab custom hg19 archived low read length ENCFF000OJZ fastq fastq reads ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 936882977 Richard Myers, HAIB 4a391a6346f52cbfe5befa0403bb7a0a https://www.encodeproject.org/files/ENCFF000OJZ/@@download/ENCFF000OJZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/44c7d1a2-43ee-4e74-a45e-3574e0619150/ENCFF000OJZ.fastq.gz low read length ENCFF283MYC bam bam unfiltered alignments GRCh38 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJZ/, /files/ENCFF643CGH/ 1294896305 ENCODE Processing Pipeline 6f49e70f8040a0f2a28fd1a635ed8276 https://www.encodeproject.org/files/ENCFF283MYC/@@download/ENCFF283MYC.bam released s3://encode-public/2016/10/26/fb701a06-23bb-4c20-85c8-8b0705de3d41/ENCFF283MYC.bam ENCODE3 GRCh38 archived low read length ENCFF562XPJ bam bam alignments GRCh38 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJZ/, /files/ENCFF643CGH/ 822401925 ENCODE Processing Pipeline 4b36056e5e5b37a56d39d90af50e2d14 https://www.encodeproject.org/files/ENCFF562XPJ/@@download/ENCFF562XPJ.bam released s3://encode-public/2016/10/26/289b2765-ede5-4236-b1ca-f3ec6ee310e0/ENCFF562XPJ.bam ENCODE3 GRCh38 archived low read length ENCFF110IVU bam bam unfiltered alignments hg19 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJZ/, /files/ENCFF807MUK/ 1311698624 ENCODE Processing Pipeline 789f73db8b46487f6b7099274fc55056 https://www.encodeproject.org/files/ENCFF110IVU/@@download/ENCFF110IVU.bam released s3://encode-public/2016/11/13/9aaf61a1-9aef-4417-b243-e8388f35e6ea/ENCFF110IVU.bam ENCODE3 hg19 archived low read length ENCFF376UIU bam bam alignments hg19 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OJZ/, /files/ENCFF807MUK/ 816877945 ENCODE Processing Pipeline b55efb6f224e34dd54f2851d6d228cd9 https://www.encodeproject.org/files/ENCFF376UIU/@@download/ENCFF376UIU.bam released s3://encode-public/2016/11/13/e63bf96a-b1b3-4180-8972-46e0c50e20a6/ENCFF376UIU.bam ENCODE3 hg19 archived low read length ENCFF783YGM bam bam unfiltered alignments GRCh38 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000OJZ/ 1263845020 ENCODE Processing Pipeline 68ba4c83c25f7890cb64db0eefea9ab0 https://www.encodeproject.org/files/ENCFF783YGM/@@download/ENCFF783YGM.bam released s3://encode-public/2020/10/28/9bcb6574-15d0-49a6-9cc4-1ddf70620287/ENCFF783YGM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF595UGC bam bam alignments GRCh38 ENCSR000BLC Control ChIP-seq /human-donors/ENCDO000ACA/ EFO:0002785 GM12891 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000OJZ/ 904899275 ENCODE Processing Pipeline 23ace7e79ac01112095c1ed3c6cb3b50 https://www.encodeproject.org/files/ENCFF595UGC/@@download/ENCFF595UGC.bam released s3://encode-public/2020/10/28/36a2c23d-33f8-41f7-858e-fd5881428443/ENCFF595UGC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF918GBV bam bam unfiltered alignments hg19 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EID/, /files/ENCFF002EIA/ 6570929991 ENCODE Processing Pipeline b8cb0d442132bb4ba790b0725cc97748 https://www.encodeproject.org/files/ENCFF918GBV/@@download/ENCFF918GBV.bam released s3://encode-public/2018/02/21/2eab7c2e-c7db-4f3a-83e4-f038fa0f6522/ENCFF918GBV.bam ENCODE3 hg19 archived ENCFF784XSN bam bam unfiltered alignments hg19 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EIC/, /files/ENCFF002EIB/ 7272331731 ENCODE Processing Pipeline 24f7614bc85b763abd06bb5e20a8c98c https://www.encodeproject.org/files/ENCFF784XSN/@@download/ENCFF784XSN.bam released s3://encode-public/2018/02/21/bd4c03ff-2709-45a6-9300-9fa95cecfb7b/ENCFF784XSN.bam ENCODE3 hg19 archived ENCFF002EIA fastq fastq reads ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EID/ 2916994337 Michael Snyder, Stanford 8324ea5a42a7907cde331cda22abe5a9 SRA:SRR5112088 https://www.encodeproject.org/files/ENCFF002EIA/@@download/ENCFF002EIA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/05/c2286a50-b019-429e-95a1-0a80d1d17977/ENCFF002EIA.fastq.gz ENCFF002EIB fastq fastq reads ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EIC/ 3258204596 Michael Snyder, Stanford 4ced8ad74a148c69a89385179be9e7ca SRA:SRR5112087 https://www.encodeproject.org/files/ENCFF002EIB/@@download/ENCFF002EIB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/05/10851386-dae0-499c-bcb1-179fe5ec4b6a/ENCFF002EIB.fastq.gz ENCFF002EIC fastq fastq reads ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EIB/ 3224404967 Michael Snyder, Stanford 799a6e1e4ab59d2178a25b07565e2788 SRA:SRR5112087 https://www.encodeproject.org/files/ENCFF002EIC/@@download/ENCFF002EIC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/05/1eb4f8d6-aab4-4796-9a2d-adf3a28d1c82/ENCFF002EIC.fastq.gz ENCFF002EID fastq fastq reads ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EIA/ 2894291291 Michael Snyder, Stanford 99654b9c84ebc95050501a8f001ef01a SRA:SRR5112088 https://www.encodeproject.org/files/ENCFF002EID/@@download/ENCFF002EID.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/05/8794795e-52a4-4a47-90dc-2229cb73151c/ENCFF002EID.fastq.gz ENCFF351MRM bam bam alignments hg19 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EIC/, /files/ENCFF002EIB/ 6374403622 ENCODE Processing Pipeline 3443749f6b02466472ef75f06be20878 https://www.encodeproject.org/files/ENCFF351MRM/@@download/ENCFF351MRM.bam released s3://encode-public/2015/10/28/9a56c672-e086-4059-a7a5-d7c90957449b/ENCFF351MRM.bam ENCODE3 hg19 archived ENCFF491IVG bam bam alignments hg19 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EID/, /files/ENCFF002EIA/ 5763305312 ENCODE Processing Pipeline 9c82cd9a27582888c44cd22bec8f2e45 https://www.encodeproject.org/files/ENCFF491IVG/@@download/ENCFF491IVG.bam released s3://encode-public/2015/10/29/9e5b6a9b-b7b2-4cd0-a07f-fef3c52ccc76/ENCFF491IVG.bam ENCODE3 hg19 archived ENCFF150LPL bam bam unfiltered alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EIC/, /files/ENCFF002EIB/ 7292859495 ENCODE Processing Pipeline 057cbb207a4f7c311c09fd19c643fe84 https://www.encodeproject.org/files/ENCFF150LPL/@@download/ENCFF150LPL.bam released s3://encode-public/2016/05/06/47d8a8b5-7ba6-47b0-b528-ada4d647dc35/ENCFF150LPL.bam ENCODE3 GRCh38 archived ENCFF045HFN bam bam unfiltered alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EID/, /files/ENCFF002EIA/ 6590675343 ENCODE Processing Pipeline 60fc7300ef1c1af7da9180cf1adc5d44 https://www.encodeproject.org/files/ENCFF045HFN/@@download/ENCFF045HFN.bam released s3://encode-public/2016/05/06/fa5cc046-290b-4d54-9639-e8cacf490712/ENCFF045HFN.bam ENCODE3 GRCh38 archived ENCFF275AKX bam bam alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EID/, /files/ENCFF002EIA/ 5776525553 ENCODE Processing Pipeline e3201d108dd0e9f2fc40eccdcbc1873a https://www.encodeproject.org/files/ENCFF275AKX/@@download/ENCFF275AKX.bam released s3://encode-public/2016/05/06/1ff1896b-5a0e-41d7-82cd-73ccd5c85f47/ENCFF275AKX.bam ENCODE3 GRCh38 archived ENCFF508JSQ bam bam alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EIC/, /files/ENCFF002EIB/ 6388001928 ENCODE Processing Pipeline f57ad4e014dc4334d383eef61dea925f https://www.encodeproject.org/files/ENCFF508JSQ/@@download/ENCFF508JSQ.bam released s3://encode-public/2016/05/06/f3db74ec-2110-40e5-97fb-2c0b1c013ad2/ENCFF508JSQ.bam ENCODE3 GRCh38 archived ENCFF310JPC bam bam alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002EID/, /files/ENCFF002EIA/ 5277628071 ENCODE Processing Pipeline c47ac7e869e5fdfea599c966d8c7705e https://www.encodeproject.org/files/ENCFF310JPC/@@download/ENCFF310JPC.bam released s3://encode-public/2020/06/13/3429b1b3-2168-4c9f-9b49-0623820289f2/ENCFF310JPC.bam ENCODE4 GRCh38 released ENCFF814QUY bam bam unfiltered alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EIC/, /files/ENCFF002EIB/ 7210107961 ENCODE Processing Pipeline 13c213143163d567ed3eeef7bb39e3a2 https://www.encodeproject.org/files/ENCFF814QUY/@@download/ENCFF814QUY.bam released s3://encode-public/2020/06/13/23612a44-a6ca-48ab-93a4-495db4e9debc/ENCFF814QUY.bam ENCODE4 GRCh38 released ENCFF423ZRC bam bam alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EIC/, /files/ENCFF002EIB/ 5829623029 ENCODE Processing Pipeline f16298ef0ab6726be950473586bd0fdf https://www.encodeproject.org/files/ENCFF423ZRC/@@download/ENCFF423ZRC.bam released s3://encode-public/2020/06/13/581a6e3d-6f36-4c33-b329-5fff35dd5582/ENCFF423ZRC.bam ENCODE4 GRCh38 released ENCFF091BEO bam bam unfiltered alignments GRCh38 ENCSR770GTP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002EID/, /files/ENCFF002EIA/ 6518809216 ENCODE Processing Pipeline 46fe0c227b7f6f3dc6a3f51da4adfefd https://www.encodeproject.org/files/ENCFF091BEO/@@download/ENCFF091BEO.bam released s3://encode-public/2020/06/13/d7f5c912-3bf5-4738-a75c-a6ed6c8bee40/ENCFF091BEO.bam ENCODE4 GRCh38 released ENCFF242TAF fastq fastq reads ENCSR835OKW Control ChIP-seq /fly-donors/ENCDO424TBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38912/'], '@type': ['Target', 'Item'], 'name': 'ERR-dmelanogaster', 'label': 'ERR', '@id': '/targets/ERR-dmelanogaster/', 'title': 'ERR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f023945c-25d4-46ae-8946-29ea5759b0ed', 'status': 'released'} dm3 3R 18306556 18327888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 791296459 Kevin White, UChicago e3f1017eb0509709f4b8af50a88b77e0 https://www.encodeproject.org/files/ENCFF242TAF/@@download/ENCFF242TAF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/854641d6-8365-49f9-b29a-af15c1e77d27/ENCFF242TAF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF555XLM bam bam alignments dm3 ENCSR835OKW Control ChIP-seq /fly-donors/ENCDO424TBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38912/'], '@type': ['Target', 'Item'], 'name': 'ERR-dmelanogaster', 'label': 'ERR', '@id': '/targets/ERR-dmelanogaster/', 'title': 'ERR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f023945c-25d4-46ae-8946-29ea5759b0ed', 'status': 'released'} dm3 3R 18306556 18327888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF242TAF/ 1155185021 Kevin White, UChicago 9838027aa181f2915d8733f477b7fa40 https://www.encodeproject.org/files/ENCFF555XLM/@@download/ENCFF555XLM.bam released s3://encode-public/2015/08/03/1747fbf1-85f4-4c60-868b-92c4acb1fe31/ENCFF555XLM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF319NNU bigWig bigWig signal of unique reads dm3 ENCSR835OKW Control ChIP-seq /fly-donors/ENCDO424TBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38912/'], '@type': ['Target', 'Item'], 'name': 'ERR-dmelanogaster', 'label': 'ERR', '@id': '/targets/ERR-dmelanogaster/', 'title': 'ERR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f023945c-25d4-46ae-8946-29ea5759b0ed', 'status': 'released'} dm3 3R 18306556 18327888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF555XLM/ 15501738 Kevin White, UChicago 4d4743fc87cddd0a3b8cce6f66c12577 https://www.encodeproject.org/files/ENCFF319NNU/@@download/ENCFF319NNU.bigWig released s3://encode-public/2015/10/06/87a85e12-5bd0-48d4-ab1a-7fcaaf101011/ENCFF319NNU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF474NQC bigWig bigWig read-depth normalized signal dm3 ENCSR835OKW Control ChIP-seq /fly-donors/ENCDO424TBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38912/'], '@type': ['Target', 'Item'], 'name': 'ERR-dmelanogaster', 'label': 'ERR', '@id': '/targets/ERR-dmelanogaster/', 'title': 'ERR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f023945c-25d4-46ae-8946-29ea5759b0ed', 'status': 'released'} dm3 3R 18306556 18327888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF555XLM/ 15497088 Kevin White, UChicago d196595b297019d389c7463969dc799b https://www.encodeproject.org/files/ENCFF474NQC/@@download/ENCFF474NQC.bigWig released s3://encode-public/2015/10/06/171661e8-6c82-4fb8-863a-52e933433d43/ENCFF474NQC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF434GWG bam bam alignments dm6 ENCSR835OKW Control ChIP-seq /fly-donors/ENCDO424TBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38912/'], '@type': ['Target', 'Item'], 'name': 'ERR-dmelanogaster', 'label': 'ERR', '@id': '/targets/ERR-dmelanogaster/', 'title': 'ERR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f023945c-25d4-46ae-8946-29ea5759b0ed', 'status': 'released'} dm3 3R 18306556 18327888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF242TAF/ 1150018657 Kevin White, UChicago 7cb69e77b78d4324b9a025cf599a06d1 https://www.encodeproject.org/files/ENCFF434GWG/@@download/ENCFF434GWG.bam released s3://encode-public/2016/04/21/a192856f-fd3e-482c-89c0-9963c213b917/ENCFF434GWG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF655BNH bigWig bigWig read-depth normalized signal dm6 ENCSR835OKW Control ChIP-seq /fly-donors/ENCDO424TBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38912/'], '@type': ['Target', 'Item'], 'name': 'ERR-dmelanogaster', 'label': 'ERR', '@id': '/targets/ERR-dmelanogaster/', 'title': 'ERR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f023945c-25d4-46ae-8946-29ea5759b0ed', 'status': 'released'} dm3 3R 18306556 18327888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF434GWG/ 17511198 Kevin White, UChicago 534e0b56cb0307d0a7d3f349c2083da8 https://www.encodeproject.org/files/ENCFF655BNH/@@download/ENCFF655BNH.bigWig released s3://encode-public/2016/06/21/6c8b3cc9-fc85-4204-aa40-30469eb9cc20/ENCFF655BNH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF980YUH bigWig bigWig signal of unique reads dm6 ENCSR835OKW Control ChIP-seq /fly-donors/ENCDO424TBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38912/'], '@type': ['Target', 'Item'], 'name': 'ERR-dmelanogaster', 'label': 'ERR', '@id': '/targets/ERR-dmelanogaster/', 'title': 'ERR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f023945c-25d4-46ae-8946-29ea5759b0ed', 'status': 'released'} dm3 3R 18306556 18327888 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF434GWG/ 17510541 Kevin White, UChicago cea51a2915358eceaf55f74769d3c0be https://www.encodeproject.org/files/ENCFF980YUH/@@download/ENCFF980YUH.bigWig released s3://encode-public/2016/06/21/ea76d22a-59a2-46f7-bdc4-e9ebd646f10a/ENCFF980YUH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF224JEB fastq fastq reads ENCSR540NNC Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 101541686 Michael Snyder, Stanford a68607dd9cb3a3211f23c71a0a197e30 https://www.encodeproject.org/files/ENCFF224JEB/@@download/ENCFF224JEB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8acd4cdb-f940-47e9-b229-19c1fe27f291/ENCFF224JEB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF935OTO fastq fastq reads ENCSR540NNC Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 104714594 Michael Snyder, Stanford 5b2df5f07e073022545a7a52dd7f320f https://www.encodeproject.org/files/ENCFF935OTO/@@download/ENCFF935OTO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e611bae6-195a-4931-ace3-9abc7dbcd215/ENCFF935OTO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF373JAL bam bam alignments ce10 ENCSR540NNC Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF224JEB/, /files/ENCFF935OTO/, /files/ENCFF987UMF/ 232002192 Kevin White, UChicago 1babb8482be7cdd519af20380198de3b https://www.encodeproject.org/files/ENCFF373JAL/@@download/ENCFF373JAL.bam released s3://encode-public/2016/10/18/a768eecc-fea1-4f36-b755-6a16cb23d7d4/ENCFF373JAL.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF340DCE bam bam alignments ce11 ENCSR540NNC Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF224JEB/, /files/ENCFF935OTO/, /files/ENCFF586MOL/ 232207673 Kevin White, UChicago c6c5211f1ab76d570132289d92e83b33 https://www.encodeproject.org/files/ENCFF340DCE/@@download/ENCFF340DCE.bam released s3://encode-public/2016/10/18/85ab900a-c136-458d-9c8b-f32caf4be363/ENCFF340DCE.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF505SRB bigWig bigWig read-depth normalized signal ce10 ENCSR540NNC Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': 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UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF340DCE/ 10037363 Kevin White, UChicago bc0b91c5945d23048c33a992b41c6fa2 https://www.encodeproject.org/files/ENCFF092GSG/@@download/ENCFF092GSG.bigWig released s3://encode-public/2016/10/20/ab6277a3-347c-456e-86e2-b848ebab2a1e/ENCFF092GSG.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF003CJG bigWig bigWig signal of unique reads ce11 ENCSR540NNC Control ChIP-seq /worm-donors/ENCDO732JQL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174452/'], '@type': ['Target', 'Item'], 'name': 'jun-1-celegans', 'label': 'jun-1', '@id': '/targets/jun-1-celegans/', 'title': 'jun-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '529bd6c6-a9e3-434b-8256-662ff74a0023', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF340DCE/ 9992721 Kevin White, UChicago 4377c448f6fcdd7cf235f1c0784874f9 https://www.encodeproject.org/files/ENCFF003CJG/@@download/ENCFF003CJG.bigWig released s3://encode-public/2016/10/20/683c1dbd-c7e2-40a5-9b0e-bd16045a63d7/ENCFF003CJG.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF000RJN bigWig bigWig raw signal hg19 ENCSR000BVX Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 327752372 Richard Myers, HAIB 5283641326d2c988b787f128d350499b https://www.encodeproject.org/files/ENCFF000RJN/@@download/ENCFF000RJN.bigWig archived s3://encode-public/2012/01/23/6757ce5e-64e9-412b-8aa3-67d4db326790/ENCFF000RJN.bigWig Lab custom hg19 archived ENCFF000RJO bam bam alignments hg19 ENCSR000BVX Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000RJY/ 2686423577 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1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HKF/ 966363403 ENCODE Processing Pipeline fcb8610d7c268d0a32822f4709db83c6 https://www.encodeproject.org/files/ENCFF632ZLA/@@download/ENCFF632ZLA.bam released s3://encode-public/2016/08/09/b022a23c-b922-4b8f-8873-8b6623305a8f/ENCFF632ZLA.bam ENCODE3 GRCh38 archived low read length ENCFF489TFZ bam bam unfiltered alignments hg19 ENCSR000DTB Control ChIP-seq /human-donors/ENCDO227AAA/ CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HKF/ 1274288949 ENCODE Processing Pipeline 396f4d17a3f92c8c995c3bc899750fdf https://www.encodeproject.org/files/ENCFF489TFZ/@@download/ENCFF489TFZ.bam released s3://encode-public/2016/11/13/016a4c5c-3e5f-4e92-a224-cd318ce5bfaf/ENCFF489TFZ.bam ENCODE3 hg19 archived low read length ENCFF092GCH bam bam alignments hg19 ENCSR000DTB Control ChIP-seq /human-donors/ENCDO227AAA/ CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HKF/ 966537025 ENCODE Processing Pipeline 00e34c7f93a81e6eaae115987d1ee68b https://www.encodeproject.org/files/ENCFF092GCH/@@download/ENCFF092GCH.bam released s3://encode-public/2016/11/13/bbc4bc83-0273-444e-ba16-1f343b7added/ENCFF092GCH.bam ENCODE3 hg19 archived low read length ENCFF679DGE bam bam unfiltered alignments GRCh38 ENCSR000DTB Control ChIP-seq /human-donors/ENCDO227AAA/ CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HKF/ 1260116478 ENCODE Processing Pipeline 1efe5f403ae00b23165a988d6389a555 https://www.encodeproject.org/files/ENCFF679DGE/@@download/ENCFF679DGE.bam released s3://encode-public/2020/09/03/6efd4af6-e1fb-4a1e-a504-a5d67294bd4c/ENCFF679DGE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF283AGD bam bam alignments GRCh38 ENCSR000DTB Control ChIP-seq /human-donors/ENCDO227AAA/ CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HKF/ 1040172971 ENCODE Processing Pipeline 0a024edaf8267b5c5793013055d6547c https://www.encodeproject.org/files/ENCFF283AGD/@@download/ENCFF283AGD.bam released s3://encode-public/2020/09/03/5f9fb4f8-7b9d-4135-8456-ecbc06e62d75/ENCFF283AGD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF804IVF fastq fastq reads ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 102364442 Michael Snyder, Stanford ee063e3888e1cc71dad450289570daf3 https://www.encodeproject.org/files/ENCFF804IVF/@@download/ENCFF804IVF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/508f0a05-7623-4ac6-b8e8-d2854fd5ab69/ENCFF804IVF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF225IPJ fastq fastq reads ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 167372289 Michael Snyder, Stanford 588ff6faf311d2b758287b097b2c7a99 https://www.encodeproject.org/files/ENCFF225IPJ/@@download/ENCFF225IPJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/45f447f9-7639-4c84-b99e-75715b0c3e2b/ENCFF225IPJ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF625EWU bam bam alignments ce10 ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF225IPJ/, /files/ENCFF804IVF/, /files/ENCFF987UMF/ 326937576 Kevin White, UChicago e85f4d47952d9a2c65a54202fd290e07 https://www.encodeproject.org/files/ENCFF625EWU/@@download/ENCFF625EWU.bam released s3://encode-public/2016/10/18/1f27376b-f058-49d3-b7bf-4e75596a4676/ENCFF625EWU.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF022KEG bam bam alignments ce11 ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF225IPJ/, /files/ENCFF804IVF/, /files/ENCFF586MOL/ 327234480 Kevin White, UChicago ff1a161e3bd09f2f47ae42bb4570a9ad https://www.encodeproject.org/files/ENCFF022KEG/@@download/ENCFF022KEG.bam released s3://encode-public/2016/10/18/8c2b19c2-e3aa-4ceb-a61c-2c12f50fe0eb/ENCFF022KEG.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF096BNQ bigWig bigWig signal of unique reads ce10 ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF625EWU/ 10072777 Kevin White, UChicago ea24fd088aff4ecd48d8c2bf18b47888 https://www.encodeproject.org/files/ENCFF096BNQ/@@download/ENCFF096BNQ.bigWig released s3://encode-public/2016/10/19/3434f5d0-df37-48f2-b9e1-631661572f8b/ENCFF096BNQ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF539BCC bigWig bigWig read-depth normalized signal ce10 ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF625EWU/ 10087917 Kevin White, UChicago d74d1584a9ee1cd19d057da4ac5b4e9a https://www.encodeproject.org/files/ENCFF539BCC/@@download/ENCFF539BCC.bigWig released s3://encode-public/2016/10/19/9b4240bb-07a9-41ee-a1d5-bbfaf4b9cb13/ENCFF539BCC.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF325PPY bigWig bigWig read-depth normalized signal ce11 ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF022KEG/ 10080251 Kevin White, UChicago f8a120b9c3dc5a93496d0ac8ee6075a5 https://www.encodeproject.org/files/ENCFF325PPY/@@download/ENCFF325PPY.bigWig released s3://encode-public/2016/10/19/9ca6e740-59d1-4308-a22a-3c705e5ee0a7/ENCFF325PPY.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF217LDD bigWig bigWig signal of unique reads ce11 ENCSR269LRI Control ChIP-seq /worm-donors/ENCDO421UGA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF022KEG/ 10065832 Kevin White, UChicago 888cf97a92d6bca2d1167252cf35fce6 https://www.encodeproject.org/files/ENCFF217LDD/@@download/ENCFF217LDD.bigWig released s3://encode-public/2016/10/19/c47fd5b0-21df-4df4-984e-41c0df04c3cc/ENCFF217LDD.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF899ZQI fastq fastq reads ENCSR169GCJ Control ChIP-seq /worm-donors/ENCDO643NHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179426/'], '@type': ['Target', 'Item'], 'name': 'nhr-232-celegans', 'label': 'nhr-232', '@id': '/targets/nhr-232-celegans/', 'title': 'nhr-232 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6936b379-f6c9-4848-8337-a502751245f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 367734336 Kevin White, UChicago f8cc6d0e707c4ae84a2a83600cb6170c https://www.encodeproject.org/files/ENCFF899ZQI/@@download/ENCFF899ZQI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/826f27e1-24db-4edd-a785-7c631fb39e41/ENCFF899ZQI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF626YSY bam bam alignments ce10 ENCSR169GCJ Control ChIP-seq /worm-donors/ENCDO643NHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179426/'], '@type': ['Target', 'Item'], 'name': 'nhr-232-celegans', 'label': 'nhr-232', '@id': '/targets/nhr-232-celegans/', 'title': 'nhr-232 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6936b379-f6c9-4848-8337-a502751245f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF899ZQI/ 526778973 Kevin White, UChicago 966c64b31f75bf7518203e931a819a47 https://www.encodeproject.org/files/ENCFF626YSY/@@download/ENCFF626YSY.bam released s3://encode-public/2015/08/07/f9a6f98b-dc24-40cf-89b9-144ff85d8257/ENCFF626YSY.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF671BDT bigWig bigWig read-depth normalized signal ce10 ENCSR169GCJ Control ChIP-seq /worm-donors/ENCDO643NHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179426/'], '@type': ['Target', 'Item'], 'name': 'nhr-232-celegans', 'label': 'nhr-232', '@id': '/targets/nhr-232-celegans/', 'title': 'nhr-232 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6936b379-f6c9-4848-8337-a502751245f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF626YSY/ 10051814 Kevin White, UChicago 6dcedb13bdc266591401fe31d67d8f8a https://www.encodeproject.org/files/ENCFF671BDT/@@download/ENCFF671BDT.bigWig released s3://encode-public/2015/10/02/81cb7383-1f71-45a9-a85e-a91e9a575459/ENCFF671BDT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF270OBJ bigWig bigWig signal of unique reads ce10 ENCSR169GCJ Control ChIP-seq /worm-donors/ENCDO643NHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179426/'], '@type': ['Target', 'Item'], 'name': 'nhr-232-celegans', 'label': 'nhr-232', '@id': '/targets/nhr-232-celegans/', 'title': 'nhr-232 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6936b379-f6c9-4848-8337-a502751245f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF626YSY/ 10000338 Kevin White, UChicago 4595636d9a80251aa315aec0541fa43b https://www.encodeproject.org/files/ENCFF270OBJ/@@download/ENCFF270OBJ.bigWig released s3://encode-public/2015/10/02/6b0b0ba0-cdc7-4884-8d4c-d77f595f61d0/ENCFF270OBJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF749OIP bam bam alignments ce11 ENCSR169GCJ Control ChIP-seq /worm-donors/ENCDO643NHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179426/'], '@type': ['Target', 'Item'], 'name': 'nhr-232-celegans', 'label': 'nhr-232', '@id': '/targets/nhr-232-celegans/', 'title': 'nhr-232 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6936b379-f6c9-4848-8337-a502751245f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF899ZQI/ 527199846 Kevin White, UChicago 4a43fd812e7108e0df02ca6506713b57 https://www.encodeproject.org/files/ENCFF749OIP/@@download/ENCFF749OIP.bam released s3://encode-public/2016/01/19/29718e78-7ae2-4122-be3b-065f33fa8ab5/ENCFF749OIP.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF989PUT bigWig bigWig signal of unique reads ce11 ENCSR169GCJ Control ChIP-seq /worm-donors/ENCDO643NHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179426/'], '@type': ['Target', 'Item'], 'name': 'nhr-232-celegans', 'label': 'nhr-232', '@id': '/targets/nhr-232-celegans/', 'title': 'nhr-232 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6936b379-f6c9-4848-8337-a502751245f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF749OIP/ 9996695 Kevin White, UChicago a052c26b6cd99737825de55f926aca7e https://www.encodeproject.org/files/ENCFF989PUT/@@download/ENCFF989PUT.bigWig released s3://encode-public/2016/02/03/c5321aa2-ff09-4280-8996-c241529aeeb3/ENCFF989PUT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF345EHF bigWig bigWig read-depth normalized signal ce11 ENCSR169GCJ Control ChIP-seq /worm-donors/ENCDO643NHE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179426/'], '@type': ['Target', 'Item'], 'name': 'nhr-232-celegans', 'label': 'nhr-232', '@id': '/targets/nhr-232-celegans/', 'title': 'nhr-232 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6936b379-f6c9-4848-8337-a502751245f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF749OIP/ 10045144 Kevin White, UChicago 7a230b09bee16f9aa7e2e6490b5a09d9 https://www.encodeproject.org/files/ENCFF345EHF/@@download/ENCFF345EHF.bigWig released s3://encode-public/2016/02/03/642b434c-88fe-4455-b1af-b0d3ea9d5f38/ENCFF345EHF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF578ZXG bam bam unfiltered alignments hg19 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFJ/, /files/ENCFF002EFK/, /files/ENCFF807MUK/ 8132458631 ENCODE Processing Pipeline b96303dc6757ce147f37d10ae77a3931 https://www.encodeproject.org/files/ENCFF578ZXG/@@download/ENCFF578ZXG.bam released s3://encode-public/2018/02/21/36cacf57-cb03-4060-b55b-dc9bf00bf7e8/ENCFF578ZXG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF709CCW bam bam unfiltered alignments hg19 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFN/, /files/ENCFF002EFO/ 8877027676 ENCODE Processing Pipeline a615ed2becf240efd1ecdf87f377c31d https://www.encodeproject.org/files/ENCFF709CCW/@@download/ENCFF709CCW.bam released s3://encode-public/2018/02/22/c7278761-36cb-4ac1-8e36-addb39abb9f5/ENCFF709CCW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF774KWS bam bam unfiltered alignments hg19 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF002EIO/, /files/ENCFF807MUK/, /files/ENCFF002EIR/ 4541225543 ENCODE Processing Pipeline 27bfc964c494f8ded0dda482526ff2bd https://www.encodeproject.org/files/ENCFF774KWS/@@download/ENCFF774KWS.bam released s3://encode-public/2018/02/22/2280383d-7709-4ca0-81b2-6e7924f06039/ENCFF774KWS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF002EFJ fastq fastq reads ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EFK/ 3732743383 Michael Snyder, Stanford d554331ad73887f97ccb3a62e050de05 SRA:SRR5112035 https://www.encodeproject.org/files/ENCFF002EFJ/@@download/ENCFF002EFJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/c19c6b01-c7b5-4a22-93f1-81a6dfa2d63d/ENCFF002EFJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EFK fastq fastq reads ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EFJ/ 3863043768 Michael Snyder, Stanford 13162753aac8c4ff104aea9152dda1ce SRA:SRR5112035 https://www.encodeproject.org/files/ENCFF002EFK/@@download/ENCFF002EFK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/0112013c-cfd7-4345-9dba-2289b8204892/ENCFF002EFK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EFN fastq fastq reads ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EFO/ 4421894393 Michael Snyder, Stanford 3a12e972c30816f0e144d67367c38a8d SRA:SRR5112037 https://www.encodeproject.org/files/ENCFF002EFN/@@download/ENCFF002EFN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/c8952963-ad7c-401d-9a66-ac4169343360/ENCFF002EFN.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EFO fastq fastq reads ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EFN/ 4325776973 Michael Snyder, Stanford 71c150022b1b425e7436db31c7767b59 SRA:SRR5112037 https://www.encodeproject.org/files/ENCFF002EFO/@@download/ENCFF002EFO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/8481c031-6d24-4b24-927e-1a0504103124/ENCFF002EFO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EIO fastq fastq reads ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 paired-ended 2 /files/ENCFF002EIR/ 2026108131 Michael Snyder, Stanford 57e96af7b8993b3c835424d506bc4b71 SRA:SRR5112036 https://www.encodeproject.org/files/ENCFF002EIO/@@download/ENCFF002EIO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/8d947707-6bd4-427e-9269-5eb043e196ab/ENCFF002EIO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF002EIR fastq fastq reads ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 paired-ended 1 /files/ENCFF002EIO/ 2016362833 Michael Snyder, Stanford ffd78dd01167f97ea470f3706468bf6f SRA:SRR5112036 https://www.encodeproject.org/files/ENCFF002EIR/@@download/ENCFF002EIR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/f1527916-d22e-49cf-add0-8c31f08ee7ef/ENCFF002EIR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF231HAE bam bam alignments hg19 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFN/, /files/ENCFF002EFO/ 6185250250 ENCODE Processing Pipeline d12f0f4e6a73834fd366fe4582ce1972 https://www.encodeproject.org/files/ENCFF231HAE/@@download/ENCFF231HAE.bam released s3://encode-public/2015/10/28/eeeaf76e-67ce-40b4-98ad-09a534818cd3/ENCFF231HAE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF132FAW bam bam alignments hg19 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFJ/, /files/ENCFF002EFK/, /files/ENCFF807MUK/ 7000923807 ENCODE Processing Pipeline b58c25e4c3f429668c3bfe277d3596df https://www.encodeproject.org/files/ENCFF132FAW/@@download/ENCFF132FAW.bam released s3://encode-public/2015/10/28/084dc91b-9ce4-474b-a357-eadd7a7eaf4b/ENCFF132FAW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF592OJO bam bam alignments hg19 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF002EIO/, /files/ENCFF807MUK/, /files/ENCFF002EIR/ 3897457398 ENCODE Processing Pipeline b7f20da8cbbbfdf9bc1f1671bce1fdff https://www.encodeproject.org/files/ENCFF592OJO/@@download/ENCFF592OJO.bam released s3://encode-public/2015/10/29/dd365aad-5977-45a6-8a57-6fbd7c6c9c1d/ENCFF592OJO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF961VPD bam bam unfiltered alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF002EIO/, /files/ENCFF643CGH/, /files/ENCFF002EIR/ 4550929454 ENCODE Processing Pipeline 6139c03bd5d55c89a95dc522d8fa8c1b https://www.encodeproject.org/files/ENCFF961VPD/@@download/ENCFF961VPD.bam released s3://encode-public/2016/05/06/bba78352-38a7-410c-bef5-8a144f0526fc/ENCFF961VPD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF456PZV bam bam alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 101 /files/ENCFF002EIO/, /files/ENCFF643CGH/, /files/ENCFF002EIR/ 3901284370 ENCODE Processing Pipeline aa8edc8e83648f7ecca63e9905f47208 https://www.encodeproject.org/files/ENCFF456PZV/@@download/ENCFF456PZV.bam released s3://encode-public/2016/05/06/0132bcf5-5ed2-4bce-a163-388436ce7c24/ENCFF456PZV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF040LFH bam bam unfiltered alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFJ/, /files/ENCFF002EFK/, /files/ENCFF643CGH/ 8147725974 ENCODE Processing Pipeline 0c9e6104cd57a5d016ef259b69d705ba https://www.encodeproject.org/files/ENCFF040LFH/@@download/ENCFF040LFH.bam released s3://encode-public/2016/05/06/b2e7f05c-6304-4cf8-a361-a01cc96b4b08/ENCFF040LFH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF240VRC bam bam unfiltered alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFN/, /files/ENCFF002EFO/ 8884984404 ENCODE Processing Pipeline 8326536dcd9b96cef04c45ff8f5d7233 https://www.encodeproject.org/files/ENCFF240VRC/@@download/ENCFF240VRC.bam released s3://encode-public/2016/05/06/f849a585-ba22-4691-8224-719f2e7263c6/ENCFF240VRC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF586NUV bam bam alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFJ/, /files/ENCFF002EFK/, /files/ENCFF643CGH/ 7006332689 ENCODE Processing Pipeline f139bd5e36b693671c7f21f478d53907 https://www.encodeproject.org/files/ENCFF586NUV/@@download/ENCFF586NUV.bam released s3://encode-public/2016/05/06/724cf2f0-8be9-45b0-9f20-4dbc494a0386/ENCFF586NUV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF386EWJ bam bam alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFN/, /files/ENCFF002EFO/ 6191610997 ENCODE Processing Pipeline 30157c635b129d2ca33fb78a6e173620 https://www.encodeproject.org/files/ENCFF386EWJ/@@download/ENCFF386EWJ.bam released s3://encode-public/2016/05/06/28c59b8d-de2e-42c8-b044-c4f310618a8e/ENCFF386EWJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF097VEF bam bam unfiltered alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EFO/, /files/ENCFF002EFN/ 8813425783 ENCODE Processing Pipeline 85ff0040e44e667d71c4915013868ae1 https://www.encodeproject.org/files/ENCFF097VEF/@@download/ENCFF097VEF.bam released s3://encode-public/2020/06/13/d9b6e4b0-4c0c-4d17-90fc-5deccd7973b1/ENCFF097VEF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF855COI bam bam alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002EFK/, /files/ENCFF002EFJ/ 6640562165 ENCODE Processing Pipeline 67afa23f66bfd1b19e5a947ef590c446 https://www.encodeproject.org/files/ENCFF855COI/@@download/ENCFF855COI.bam released s3://encode-public/2020/06/13/79fc0277-5933-4e94-9d86-4670832f4c72/ENCFF855COI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF067GJF bam bam alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EFO/, /files/ENCFF002EFN/ 5874711433 ENCODE Processing Pipeline 8a16136029488976c7b905cea7e06795 https://www.encodeproject.org/files/ENCFF067GJF/@@download/ENCFF067GJF.bam released s3://encode-public/2020/06/13/0d6b2853-62ea-4ae3-8c09-5767ad74b01c/ENCFF067GJF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF037BXO bam bam alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 /files/ENCFF002EIO/, /files/ENCFF110MCL/, /files/ENCFF002EIR/ 3700429682 ENCODE Processing Pipeline 5f605871399950752591d800eb65c67c https://www.encodeproject.org/files/ENCFF037BXO/@@download/ENCFF037BXO.bam released s3://encode-public/2020/06/13/dffaf69b-42f3-4b1d-affe-4c94a97ff26a/ENCFF037BXO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF023KHP bam bam unfiltered alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002EFK/, /files/ENCFF002EFJ/ 8057931047 ENCODE Processing Pipeline c132c3bb232fb58fce31635a9f81b332 https://www.encodeproject.org/files/ENCFF023KHP/@@download/ENCFF023KHP.bam released s3://encode-public/2020/06/13/34f05982-3457-4e86-9eb0-fd9f3db3fab3/ENCFF023KHP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF243OIY bam bam unfiltered alignments GRCh38 ENCSR760PBD Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 3 3_1 100 /files/ENCFF002EIO/, /files/ENCFF110MCL/, /files/ENCFF002EIR/ 4504071031 ENCODE Processing Pipeline 172fc868fc4ec9a887d6b08a8aa0448e https://www.encodeproject.org/files/ENCFF243OIY/@@download/ENCFF243OIY.bam released s3://encode-public/2020/06/13/d872fd0d-f732-4ecc-a10d-78997115854d/ENCFF243OIY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF571EEL fastq fastq reads ENCSR830PLY Control ChIP-seq /worm-donors/ENCDO894HBO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175250/'], '@type': ['Target', 'Item'], 'name': 'ztf-18-celegans', 'label': 'ztf-18', '@id': '/targets/ztf-18-celegans/', 'title': 'ztf-18 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '3b0c7df7-f3cf-4f12-8759-65a113edc882', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 504670415 Kevin White, UChicago bfe957fe7cdf015ae3fd4378c0e8fb39 https://www.encodeproject.org/files/ENCFF571EEL/@@download/ENCFF571EEL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/88b6915b-866a-40d0-b24c-8631d27d1631/ENCFF571EEL.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF493BGI bam bam alignments ce10 ENCSR830PLY Control ChIP-seq /worm-donors/ENCDO894HBO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175250/'], '@type': ['Target', 'Item'], 'name': 'ztf-18-celegans', 'label': 'ztf-18', '@id': '/targets/ztf-18-celegans/', 'title': 'ztf-18 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '3b0c7df7-f3cf-4f12-8759-65a113edc882', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF571EEL/ 731821214 Kevin White, UChicago ae4788a3b1f1907b4af2388c78d0bf6a https://www.encodeproject.org/files/ENCFF493BGI/@@download/ENCFF493BGI.bam released s3://encode-public/2015/08/07/e67ae273-b152-41fb-bd5e-74a6ce1227e1/ENCFF493BGI.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF373YUC bigWig bigWig signal of unique reads ce10 ENCSR830PLY Control ChIP-seq /worm-donors/ENCDO894HBO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175250/'], '@type': ['Target', 'Item'], 'name': 'ztf-18-celegans', 'label': 'ztf-18', '@id': '/targets/ztf-18-celegans/', 'title': 'ztf-18 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '3b0c7df7-f3cf-4f12-8759-65a113edc882', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF493BGI/ 9961706 Kevin White, UChicago ab217ed71ad98fc4b813fa1929c5ec31 https://www.encodeproject.org/files/ENCFF373YUC/@@download/ENCFF373YUC.bigWig released s3://encode-public/2015/10/02/2d2c02f3-af14-4f92-bce2-489c11b6bfd8/ENCFF373YUC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF442TIT bigWig bigWig read-depth normalized signal ce10 ENCSR830PLY Control ChIP-seq /worm-donors/ENCDO894HBO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175250/'], '@type': ['Target', 'Item'], 'name': 'ztf-18-celegans', 'label': 'ztf-18', '@id': '/targets/ztf-18-celegans/', 'title': 'ztf-18 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '3b0c7df7-f3cf-4f12-8759-65a113edc882', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF493BGI/ 9967156 Kevin White, UChicago 12c4d6a62b5653b88c2d5a09ff640160 https://www.encodeproject.org/files/ENCFF442TIT/@@download/ENCFF442TIT.bigWig released s3://encode-public/2015/10/02/f318bf61-94fe-41ac-ae83-dfd43052c180/ENCFF442TIT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF511WTQ bam bam alignments ce11 ENCSR830PLY Control ChIP-seq /worm-donors/ENCDO894HBO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175250/'], '@type': ['Target', 'Item'], 'name': 'ztf-18-celegans', 'label': 'ztf-18', '@id': '/targets/ztf-18-celegans/', 'title': 'ztf-18 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '3b0c7df7-f3cf-4f12-8759-65a113edc882', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF571EEL/ 732470729 Kevin White, UChicago 4e66e4f557df58579a062a5821668631 https://www.encodeproject.org/files/ENCFF511WTQ/@@download/ENCFF511WTQ.bam released s3://encode-public/2016/01/20/ba8fbbbf-ad0c-44a2-afe0-620a1c0c1724/ENCFF511WTQ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF015QNW bigWig bigWig signal of unique reads ce11 ENCSR830PLY Control ChIP-seq /worm-donors/ENCDO894HBO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175250/'], '@type': ['Target', 'Item'], 'name': 'ztf-18-celegans', 'label': 'ztf-18', '@id': '/targets/ztf-18-celegans/', 'title': 'ztf-18 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '3b0c7df7-f3cf-4f12-8759-65a113edc882', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF511WTQ/ 9959574 Kevin White, UChicago 01984cb98d36b017c6863ff2f9938c48 https://www.encodeproject.org/files/ENCFF015QNW/@@download/ENCFF015QNW.bigWig released s3://encode-public/2016/02/03/aadd2647-b89d-48be-887f-1c0e79a9e525/ENCFF015QNW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF333COE bigWig bigWig read-depth normalized signal ce11 ENCSR830PLY Control ChIP-seq /worm-donors/ENCDO894HBO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175250/'], '@type': ['Target', 'Item'], 'name': 'ztf-18-celegans', 'label': 'ztf-18', '@id': '/targets/ztf-18-celegans/', 'title': 'ztf-18 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '3b0c7df7-f3cf-4f12-8759-65a113edc882', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF511WTQ/ 9964291 Kevin White, UChicago 930a37a544a5252733894fc2afaaed40 https://www.encodeproject.org/files/ENCFF333COE/@@download/ENCFF333COE.bigWig released s3://encode-public/2016/02/03/18ddf2d6-2d4f-4408-9068-b954468e9207/ENCFF333COE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF117DJX fastq fastq reads ENCSR701DBM Control ChIP-seq /worm-donors/ENCDO316BKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181069/'], '@type': ['Target', 'Item'], 'name': 'hlh-8-celegans', 'label': 'hlh-8', '@id': '/targets/hlh-8-celegans/', 'title': 'hlh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d42009b-50ab-46a9-92a2-22a7b039e7db', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 1717102682 Kevin White, UChicago e01113819576c8a2a1e0b836a7db32be https://www.encodeproject.org/files/ENCFF117DJX/@@download/ENCFF117DJX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/b72d6e70-cd00-49e5-8c6b-646ffe3bb8bc/ENCFF117DJX.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF637GPS bam bam alignments ce10 ENCSR701DBM Control ChIP-seq /worm-donors/ENCDO316BKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181069/'], '@type': ['Target', 'Item'], 'name': 'hlh-8-celegans', 'label': 'hlh-8', '@id': '/targets/hlh-8-celegans/', 'title': 'hlh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d42009b-50ab-46a9-92a2-22a7b039e7db', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF117DJX/ 2439959852 Kevin White, UChicago 722e3b872000f5e9d5e4aa701e50cafd https://www.encodeproject.org/files/ENCFF637GPS/@@download/ENCFF637GPS.bam released s3://encode-public/2015/08/19/b8edf1a4-a084-45d4-aed9-8afa66ec514b/ENCFF637GPS.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF587YXU bigWig bigWig signal of unique reads ce10 ENCSR701DBM Control ChIP-seq /worm-donors/ENCDO316BKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181069/'], '@type': ['Target', 'Item'], 'name': 'hlh-8-celegans', 'label': 'hlh-8', '@id': '/targets/hlh-8-celegans/', 'title': 'hlh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d42009b-50ab-46a9-92a2-22a7b039e7db', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF637GPS/ 9977445 Kevin White, UChicago 204465c364465696bc1b1f18dbb758a8 https://www.encodeproject.org/files/ENCFF587YXU/@@download/ENCFF587YXU.bigWig released s3://encode-public/2015/10/02/974f0718-c962-410e-aa9d-03f63891140e/ENCFF587YXU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF223UAF bigWig bigWig read-depth normalized signal ce10 ENCSR701DBM Control ChIP-seq /worm-donors/ENCDO316BKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181069/'], '@type': ['Target', 'Item'], 'name': 'hlh-8-celegans', 'label': 'hlh-8', '@id': '/targets/hlh-8-celegans/', 'title': 'hlh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d42009b-50ab-46a9-92a2-22a7b039e7db', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF637GPS/ 10055984 Kevin White, UChicago 4f630c1720e62459aa56831d3da88475 https://www.encodeproject.org/files/ENCFF223UAF/@@download/ENCFF223UAF.bigWig released s3://encode-public/2015/10/02/684c240b-704f-44e2-a38b-a12b791befe0/ENCFF223UAF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF741NDO bam bam alignments ce11 ENCSR701DBM Control ChIP-seq /worm-donors/ENCDO316BKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181069/'], '@type': ['Target', 'Item'], 'name': 'hlh-8-celegans', 'label': 'hlh-8', '@id': '/targets/hlh-8-celegans/', 'title': 'hlh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d42009b-50ab-46a9-92a2-22a7b039e7db', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF117DJX/ 2442207853 Kevin White, UChicago 3cf0d3732397e76304b93afae516ccef https://www.encodeproject.org/files/ENCFF741NDO/@@download/ENCFF741NDO.bam released s3://encode-public/2016/01/17/b17e8a84-8403-4d2c-a7b6-ab6d4f7cd5a9/ENCFF741NDO.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF039NAV bigWig bigWig signal of unique reads ce11 ENCSR701DBM Control ChIP-seq /worm-donors/ENCDO316BKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181069/'], '@type': ['Target', 'Item'], 'name': 'hlh-8-celegans', 'label': 'hlh-8', '@id': '/targets/hlh-8-celegans/', 'title': 'hlh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d42009b-50ab-46a9-92a2-22a7b039e7db', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF741NDO/ 9970498 Kevin White, UChicago d36b40f07b37b1858bbd49120ab19286 https://www.encodeproject.org/files/ENCFF039NAV/@@download/ENCFF039NAV.bigWig released s3://encode-public/2016/02/03/59f98c32-6bae-49ab-b91e-be38534411cf/ENCFF039NAV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF135MXL bigWig bigWig read-depth normalized signal ce11 ENCSR701DBM Control ChIP-seq /worm-donors/ENCDO316BKO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181069/'], '@type': ['Target', 'Item'], 'name': 'hlh-8-celegans', 'label': 'hlh-8', '@id': '/targets/hlh-8-celegans/', 'title': 'hlh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d42009b-50ab-46a9-92a2-22a7b039e7db', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF741NDO/ 10043941 Kevin White, UChicago 31900d3b5041c895e96f43bf54d7f0e8 https://www.encodeproject.org/files/ENCFF135MXL/@@download/ENCFF135MXL.bigWig released s3://encode-public/2016/02/03/f3cab1cd-57b3-499d-902f-7b541e5aace8/ENCFF135MXL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF551TNJ fastq fastq reads ENCSR860XAM Control ChIP-seq /fly-donors/ENCDO194DLZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53560/'], '@type': ['Target', 'Item'], 'name': 'cic-dmelanogaster', 'label': 'cic', '@id': '/targets/cic-dmelanogaster/', 'title': 'cic (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f92b0e0c-50d6-42c7-8407-9fa49226c940', 'status': 'released'} dm3 3R 16034336 16132486 DNA 2017-12-14 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 706315294 Kevin White, UChicago 5002284c7efb0e2d0cc79f9b92a503fa https://www.encodeproject.org/files/ENCFF551TNJ/@@download/ENCFF551TNJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/2e72f1c1-190c-4f19-8b42-5b5058871f46/ENCFF551TNJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF095UPR bam bam alignments dm3 ENCSR860XAM Control ChIP-seq /fly-donors/ENCDO194DLZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53560/'], '@type': ['Target', 'Item'], 'name': 'cic-dmelanogaster', 'label': 'cic', '@id': '/targets/cic-dmelanogaster/', 'title': 'cic (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f92b0e0c-50d6-42c7-8407-9fa49226c940', 'status': 'released'} dm3 3R 16034336 16132486 DNA 2017-12-14 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF551TNJ/, /files/ENCFF059UHX/ 897479504 Kevin White, UChicago 85a106602b62dec250d488300a5531d4 https://www.encodeproject.org/files/ENCFF095UPR/@@download/ENCFF095UPR.bam released s3://encode-public/2016/12/22/c155d791-00e8-4f1b-a8f6-1bf04957f24a/ENCFF095UPR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF196HPS bam bam alignments dm6 ENCSR860XAM Control ChIP-seq /fly-donors/ENCDO194DLZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53560/'], '@type': ['Target', 'Item'], 'name': 'cic-dmelanogaster', 'label': 'cic', '@id': '/targets/cic-dmelanogaster/', 'title': 'cic (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f92b0e0c-50d6-42c7-8407-9fa49226c940', 'status': 'released'} dm3 3R 16034336 16132486 DNA 2017-12-14 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF551TNJ/, /files/ENCFF479RCH/ 864287579 Kevin White, UChicago 1f20237bd2b7ed7c5b2ac2c2cf47894c https://www.encodeproject.org/files/ENCFF196HPS/@@download/ENCFF196HPS.bam released s3://encode-public/2016/12/22/9867b757-f9c3-47da-bdd6-e307a05c4b0e/ENCFF196HPS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF244DSB bigWig bigWig read-depth normalized signal dm3 ENCSR860XAM Control ChIP-seq /fly-donors/ENCDO194DLZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53560/'], '@type': ['Target', 'Item'], 'name': 'cic-dmelanogaster', 'label': 'cic', '@id': '/targets/cic-dmelanogaster/', 'title': 'cic (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f92b0e0c-50d6-42c7-8407-9fa49226c940', 'status': 'released'} dm3 3R 16034336 16132486 DNA 2017-12-14 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF095UPR/ 15393176 Kevin White, UChicago 68ff8cfdab846e259d89a6dd3a08ebbc https://www.encodeproject.org/files/ENCFF244DSB/@@download/ENCFF244DSB.bigWig released s3://encode-public/2017/01/03/105c57ea-663d-43aa-8c29-bf1dab0f2b1d/ENCFF244DSB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF160PBI bigWig bigWig signal of unique reads dm3 ENCSR860XAM Control ChIP-seq /fly-donors/ENCDO194DLZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53560/'], '@type': ['Target', 'Item'], 'name': 'cic-dmelanogaster', 'label': 'cic', '@id': '/targets/cic-dmelanogaster/', 'title': 'cic (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f92b0e0c-50d6-42c7-8407-9fa49226c940', 'status': 'released'} dm3 3R 16034336 16132486 DNA 2017-12-14 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF095UPR/ 15434932 Kevin White, UChicago 6befb0dad85c88caaccb57d78b8d8f66 https://www.encodeproject.org/files/ENCFF160PBI/@@download/ENCFF160PBI.bigWig released s3://encode-public/2017/01/03/a19e2f56-7fdf-428e-8812-37c032fd4db2/ENCFF160PBI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF669SSY bigWig bigWig read-depth normalized signal dm6 ENCSR860XAM Control ChIP-seq /fly-donors/ENCDO194DLZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53560/'], '@type': ['Target', 'Item'], 'name': 'cic-dmelanogaster', 'label': 'cic', '@id': '/targets/cic-dmelanogaster/', 'title': 'cic (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f92b0e0c-50d6-42c7-8407-9fa49226c940', 'status': 'released'} dm3 3R 16034336 16132486 DNA 2017-12-14 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF196HPS/ 17521721 Kevin White, UChicago e782f8aeb304da74dcad244f4dc14e9a https://www.encodeproject.org/files/ENCFF669SSY/@@download/ENCFF669SSY.bigWig released s3://encode-public/2017/01/04/c1304295-fd87-456a-8c95-82dd90dbdf5b/ENCFF669SSY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF175YXC bigWig bigWig signal of unique reads dm6 ENCSR860XAM Control ChIP-seq /fly-donors/ENCDO194DLZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/53560/'], '@type': ['Target', 'Item'], 'name': 'cic-dmelanogaster', 'label': 'cic', '@id': '/targets/cic-dmelanogaster/', 'title': 'cic (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f92b0e0c-50d6-42c7-8407-9fa49226c940', 'status': 'released'} dm3 3R 16034336 16132486 DNA 2017-12-14 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF196HPS/ 17527175 Kevin White, UChicago 9d6e0088c0854bf5a0757fb632c76306 https://www.encodeproject.org/files/ENCFF175YXC/@@download/ENCFF175YXC.bigWig released s3://encode-public/2017/01/04/80b3517a-e377-47b1-8b10-99382561927e/ENCFF175YXC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF416HAC fastq fastq reads ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 125228948 Michael Snyder, Stanford ecde71d9be21bef170791563f644f8e3 https://www.encodeproject.org/files/ENCFF416HAC/@@download/ENCFF416HAC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a4cd6b1b-0935-420e-b487-0c24541b9955/ENCFF416HAC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF712QXY fastq fastq reads ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 102624451 Michael Snyder, Stanford 01cdd68f6182f6ba9b28741efff7ee76 https://www.encodeproject.org/files/ENCFF712QXY/@@download/ENCFF712QXY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/004e5f79-1c98-4d80-ad42-bb5be8752982/ENCFF712QXY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF240LUG fastq fastq reads ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 106991152 Michael Snyder, Stanford 4aa6c0e507055938d0e8e8c1d126966a https://www.encodeproject.org/files/ENCFF240LUG/@@download/ENCFF240LUG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cbc2cc03-4cde-4e97-841d-4ed3ba34142c/ENCFF240LUG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF354JBN bam bam alignments ce10 ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF416HAC/, /files/ENCFF712QXY/, /files/ENCFF240LUG/, /files/ENCFF987UMF/ 347781764 Kevin White, UChicago 9edef948565b2071bfa8c28eb2ac005f https://www.encodeproject.org/files/ENCFF354JBN/@@download/ENCFF354JBN.bam released s3://encode-public/2016/10/18/85cca487-2f4d-4c07-8bbb-381686868ed1/ENCFF354JBN.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF963IIQ bam bam alignments ce11 ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF416HAC/, /files/ENCFF712QXY/, /files/ENCFF240LUG/, /files/ENCFF586MOL/ 348062788 Kevin White, UChicago c27cab15795d6fb7b3358f1dbbc7ced4 https://www.encodeproject.org/files/ENCFF963IIQ/@@download/ENCFF963IIQ.bam released s3://encode-public/2016/10/18/0ed99cfb-ba81-4acb-8e87-6037b4eec9c4/ENCFF963IIQ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF126AFE bigWig bigWig signal of unique reads ce10 ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF354JBN/ 9992625 Kevin White, UChicago 19ccf067bc4ba54169b197afc1a79297 https://www.encodeproject.org/files/ENCFF126AFE/@@download/ENCFF126AFE.bigWig released s3://encode-public/2016/10/20/73c7d10c-dbd2-4b01-bf30-dc3b8e693b02/ENCFF126AFE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF795FPZ bigWig bigWig read-depth normalized signal ce10 ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF354JBN/ 10032851 Kevin White, UChicago e936a5e3979f1d365c2ed22290e07cc5 https://www.encodeproject.org/files/ENCFF795FPZ/@@download/ENCFF795FPZ.bigWig released s3://encode-public/2016/10/20/d9f2bf1e-2afd-41e7-a38b-011cd3fab20d/ENCFF795FPZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF103XQN bigWig bigWig read-depth normalized signal ce11 ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF963IIQ/ 10027677 Kevin White, UChicago a6b47607e4f2eb9b985137f27bca8c11 https://www.encodeproject.org/files/ENCFF103XQN/@@download/ENCFF103XQN.bigWig released s3://encode-public/2016/10/21/c9120271-c5c5-4fac-8a54-97bdab626f30/ENCFF103XQN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF646XXP bigWig bigWig signal of unique reads ce11 ENCSR083EPE Control ChIP-seq /worm-donors/ENCDO787IPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180532/'], '@type': ['Target', 'Item'], 'name': 'peb-1-celegans', 'label': 'peb-1', '@id': '/targets/peb-1-celegans/', 'title': 'peb-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a899eb25-84aa-4026-bde0-09b2669eddc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF963IIQ/ 9989049 Kevin White, UChicago 12144994356f0be1c0ef16d15778bc20 https://www.encodeproject.org/files/ENCFF646XXP/@@download/ENCFF646XXP.bigWig released s3://encode-public/2016/10/21/233e90c7-ef72-476c-ab27-cef7ca944f2f/ENCFF646XXP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF725EMU fastq fastq reads ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 178195782 Michael Snyder, Stanford c3a86c662a57b7ade7a7b7ce2e7af968 https://www.encodeproject.org/files/ENCFF725EMU/@@download/ENCFF725EMU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bab4fee2-3456-48a7-ab0e-ab84e9c72954/ENCFF725EMU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF299HYY fastq fastq reads ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 140067318 Michael Snyder, Stanford f0f56923b0467779826475ede3b869ca https://www.encodeproject.org/files/ENCFF299HYY/@@download/ENCFF299HYY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c24c3aae-cabd-46ce-a372-ee437e36fd5a/ENCFF299HYY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF638TZN bam bam alignments ce10 ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF299HYY/, /files/ENCFF725EMU/, /files/ENCFF987UMF/ 395026322 Kevin White, UChicago b4bd1ac9959f7578b9ccea69900d443a https://www.encodeproject.org/files/ENCFF638TZN/@@download/ENCFF638TZN.bam released s3://encode-public/2016/10/18/e9199524-ad8b-4263-8ed2-80a237f393f4/ENCFF638TZN.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF204QGC bam bam alignments ce11 ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF299HYY/, /files/ENCFF725EMU/, /files/ENCFF586MOL/ 395405550 Kevin White, UChicago d930d89e171e30168182864a5375a970 https://www.encodeproject.org/files/ENCFF204QGC/@@download/ENCFF204QGC.bam released s3://encode-public/2016/10/18/01028799-99a2-4d3e-95be-1e4f7f63e488/ENCFF204QGC.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF609IXS bigWig bigWig read-depth normalized signal ce10 ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF638TZN/ 10003073 Kevin White, UChicago 87702515a6700ee4fa7e94771632a254 https://www.encodeproject.org/files/ENCFF609IXS/@@download/ENCFF609IXS.bigWig released s3://encode-public/2016/10/20/274dc9bf-7522-4d1f-b7b4-c1fcbd37c65f/ENCFF609IXS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF549OGK bigWig bigWig signal of unique reads ce10 ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF638TZN/ 10051676 Kevin White, UChicago b9319af212d9998a66dbce6b56b5d620 https://www.encodeproject.org/files/ENCFF549OGK/@@download/ENCFF549OGK.bigWig released s3://encode-public/2016/10/20/80ddb4c6-7137-4990-a878-081c8e71a193/ENCFF549OGK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF886TNO bigWig bigWig signal of unique reads ce11 ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF204QGC/ 10049536 Kevin White, UChicago 73248af6d92efa02577aa7d3baf58d51 https://www.encodeproject.org/files/ENCFF886TNO/@@download/ENCFF886TNO.bigWig released s3://encode-public/2016/10/20/1fc080a5-8b0a-4548-805b-b5d4eff41ae5/ENCFF886TNO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF668ZAJ bigWig bigWig read-depth normalized signal ce11 ENCSR917RGN Control ChIP-seq /worm-donors/ENCDO302ACT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178338/'], '@type': ['Target', 'Item'], 'name': 'tlp-1-celegans', 'label': 'tlp-1', '@id': '/targets/tlp-1-celegans/', 'title': 'tlp-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '70a63017-c24a-4bed-b5ef-63b256ba0c57', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF204QGC/ 10007641 Kevin White, UChicago ee6770e9ade39eb5c30e830401124e78 https://www.encodeproject.org/files/ENCFF668ZAJ/@@download/ENCFF668ZAJ.bigWig released s3://encode-public/2016/10/20/a365bab1-0d74-4476-a76b-5cb22a79241f/ENCFF668ZAJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF986KYP fastq fastq reads ENCSR935TKK Control ChIP-seq /fly-donors/ENCDO937RYQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43236/'], '@type': ['Target', 'Item'], 'name': 'Ets97D-dmelanogaster', 'label': 'Ets97D', '@id': '/targets/Ets97D-dmelanogaster/', 'title': 'Ets97D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20eeef2b-6938-4277-b50e-2d98205a5f29', 'status': 'released'} dm3 3R 22700850 22755841 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 406784389 Kevin White, UChicago 7cbadeac375be6f6e64681d788abf14a https://www.encodeproject.org/files/ENCFF986KYP/@@download/ENCFF986KYP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/b3be4e81-0c85-450c-a364-411ac91e1b41/ENCFF986KYP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF357GXO bam bam alignments dm3 ENCSR935TKK Control ChIP-seq /fly-donors/ENCDO937RYQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43236/'], '@type': ['Target', 'Item'], 'name': 'Ets97D-dmelanogaster', 'label': 'Ets97D', '@id': '/targets/Ets97D-dmelanogaster/', 'title': 'Ets97D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20eeef2b-6938-4277-b50e-2d98205a5f29', 'status': 'released'} dm3 3R 22700850 22755841 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF986KYP/ 604839631 Kevin White, UChicago 05302c5245e174dc44f090df50692a55 https://www.encodeproject.org/files/ENCFF357GXO/@@download/ENCFF357GXO.bam released s3://encode-public/2015/08/05/16de4a6a-5c22-49b4-8d6e-d5c3867857ac/ENCFF357GXO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF866KLQ bigWig bigWig signal of unique reads dm3 ENCSR935TKK Control ChIP-seq /fly-donors/ENCDO937RYQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43236/'], '@type': ['Target', 'Item'], 'name': 'Ets97D-dmelanogaster', 'label': 'Ets97D', '@id': '/targets/Ets97D-dmelanogaster/', 'title': 'Ets97D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20eeef2b-6938-4277-b50e-2d98205a5f29', 'status': 'released'} dm3 3R 22700850 22755841 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF357GXO/ 15302446 Kevin White, UChicago 18dcf10a5ba1ac53513f55e92a9caba7 https://www.encodeproject.org/files/ENCFF866KLQ/@@download/ENCFF866KLQ.bigWig released s3://encode-public/2015/10/05/d38d9a28-a887-43d4-8a00-16da04306a57/ENCFF866KLQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF202FQF bigWig bigWig read-depth normalized signal dm3 ENCSR935TKK Control ChIP-seq /fly-donors/ENCDO937RYQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43236/'], '@type': ['Target', 'Item'], 'name': 'Ets97D-dmelanogaster', 'label': 'Ets97D', '@id': '/targets/Ets97D-dmelanogaster/', 'title': 'Ets97D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20eeef2b-6938-4277-b50e-2d98205a5f29', 'status': 'released'} dm3 3R 22700850 22755841 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF357GXO/ 15298664 Kevin White, UChicago f3d73cf896de9d5e68a5333a50d0d4a3 https://www.encodeproject.org/files/ENCFF202FQF/@@download/ENCFF202FQF.bigWig released s3://encode-public/2015/10/05/2762381b-7b2c-4eba-b33d-65f47d606632/ENCFF202FQF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF342RQF bam bam alignments dm6 ENCSR935TKK Control ChIP-seq /fly-donors/ENCDO937RYQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43236/'], '@type': ['Target', 'Item'], 'name': 'Ets97D-dmelanogaster', 'label': 'Ets97D', '@id': '/targets/Ets97D-dmelanogaster/', 'title': 'Ets97D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20eeef2b-6938-4277-b50e-2d98205a5f29', 'status': 'released'} dm3 3R 22700850 22755841 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF986KYP/ 602078637 Kevin White, UChicago 1e42e51411fb14010a61bbb03312c42b https://www.encodeproject.org/files/ENCFF342RQF/@@download/ENCFF342RQF.bam released s3://encode-public/2016/04/21/a8eb0094-1897-4a2b-9c2f-156bf1fd17ed/ENCFF342RQF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF252KZS bigWig bigWig signal of unique reads dm6 ENCSR935TKK Control ChIP-seq /fly-donors/ENCDO937RYQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43236/'], '@type': ['Target', 'Item'], 'name': 'Ets97D-dmelanogaster', 'label': 'Ets97D', '@id': '/targets/Ets97D-dmelanogaster/', 'title': 'Ets97D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20eeef2b-6938-4277-b50e-2d98205a5f29', 'status': 'released'} dm3 3R 22700850 22755841 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF342RQF/ 17430551 Kevin White, UChicago f69228c1e09b81ec5f754d116610b21b https://www.encodeproject.org/files/ENCFF252KZS/@@download/ENCFF252KZS.bigWig released s3://encode-public/2016/06/20/6d95fb14-4788-40c8-830f-d799dbfef4c6/ENCFF252KZS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF084QVA bigWig bigWig read-depth normalized signal dm6 ENCSR935TKK Control ChIP-seq /fly-donors/ENCDO937RYQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43236/'], '@type': ['Target', 'Item'], 'name': 'Ets97D-dmelanogaster', 'label': 'Ets97D', '@id': '/targets/Ets97D-dmelanogaster/', 'title': 'Ets97D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20eeef2b-6938-4277-b50e-2d98205a5f29', 'status': 'released'} dm3 3R 22700850 22755841 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF342RQF/ 17402955 Kevin White, UChicago 44fd7d3a04f914257271ce55e1608d7f https://www.encodeproject.org/files/ENCFF084QVA/@@download/ENCFF084QVA.bigWig released s3://encode-public/2016/06/20/08f14e7c-9a59-42ae-98f1-42b0775ed9be/ENCFF084QVA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF403EHJ fastq fastq reads ENCSR080DBI Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1265920128 Kevin White, UChicago 01abbbfb98e165eebf07ccb9461aea3c https://www.encodeproject.org/files/ENCFF403EHJ/@@download/ENCFF403EHJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/5b1420bf-eab2-40f2-bfc9-b3ce7782ff6d/ENCFF403EHJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF761YRC bam bam alignments dm3 ENCSR080DBI Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF403EHJ/, /files/ENCFF059UHX/ 1725683944 Kevin White, UChicago 601f9d0897dbb2a534a19e019ee8563c https://www.encodeproject.org/files/ENCFF761YRC/@@download/ENCFF761YRC.bam released s3://encode-public/2016/12/22/cf81ee42-3d1a-463f-aa4b-a93e30c1d66e/ENCFF761YRC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF004LMG bam bam alignments dm6 ENCSR080DBI Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF403EHJ/, /files/ENCFF479RCH/ 1714989789 Kevin White, UChicago 98b917a8935ecb9b949fcadf038e2ff5 https://www.encodeproject.org/files/ENCFF004LMG/@@download/ENCFF004LMG.bam released s3://encode-public/2016/12/22/4da1c220-48d6-4815-87b5-5a595415274d/ENCFF004LMG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF407FDR bigWig bigWig signal of unique reads dm3 ENCSR080DBI Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF761YRC/ 15574547 Kevin White, UChicago 8242dcafe06c95e2b14f90c54b87c3d4 https://www.encodeproject.org/files/ENCFF407FDR/@@download/ENCFF407FDR.bigWig released s3://encode-public/2017/01/03/d47a2417-70e0-41fc-be14-4fa24c320722/ENCFF407FDR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF564MIZ bigWig bigWig read-depth normalized signal dm3 ENCSR080DBI Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF761YRC/ 15519736 Kevin White, UChicago 19b20dba4fcb99e535f53fea1d8c3ce8 https://www.encodeproject.org/files/ENCFF564MIZ/@@download/ENCFF564MIZ.bigWig released s3://encode-public/2017/01/03/047eaf00-31cc-469e-bb8e-95c7540add24/ENCFF564MIZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF407BNO bigWig bigWig read-depth normalized signal dm6 ENCSR080DBI Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF004LMG/ 17592322 Kevin White, UChicago e36b4edc80ccaac794cacfbd59ae2b7c https://www.encodeproject.org/files/ENCFF407BNO/@@download/ENCFF407BNO.bigWig released s3://encode-public/2017/01/04/1ec64d1a-d283-420a-ac07-a3782ade2719/ENCFF407BNO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF210SNE bigWig bigWig signal of unique reads dm6 ENCSR080DBI Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF004LMG/ 17692078 Kevin White, UChicago fb38a09c8d0de0afd59ef381a2ade5a1 https://www.encodeproject.org/files/ENCFF210SNE/@@download/ENCFF210SNE.bigWig released s3://encode-public/2017/01/04/03032e67-17c3-461b-bb5d-f995432dbd4f/ENCFF210SNE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF472VVT fastq fastq reads ENCSR680BUH Control ChIP-seq /fly-donors/ENCDO281NCV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41697/'], '@type': ['Target', 'Item'], 'name': 'ems-dmelanogaster', 'label': 'ems', '@id': '/targets/ems-dmelanogaster/', 'title': 'ems (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '330f9b0d-a588-49da-8543-a4b904341449', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 515814135 Kevin White, UChicago 41c2ac230f2a88f8152266e0f2127964 https://www.encodeproject.org/files/ENCFF472VVT/@@download/ENCFF472VVT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/1a039ea6-8f71-4459-bb17-effb9a620300/ENCFF472VVT.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF439RLW bam bam alignments dm3 ENCSR680BUH Control ChIP-seq /fly-donors/ENCDO281NCV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41697/'], '@type': ['Target', 'Item'], 'name': 'ems-dmelanogaster', 'label': 'ems', '@id': '/targets/ems-dmelanogaster/', 'title': 'ems (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '330f9b0d-a588-49da-8543-a4b904341449', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF472VVT/ 775567544 Kevin White, UChicago 5773d201bbf8f8433ec81e438ce31c6b https://www.encodeproject.org/files/ENCFF439RLW/@@download/ENCFF439RLW.bam released s3://encode-public/2015/08/05/58cce91f-5e28-419c-ab5b-7725a5e4fa57/ENCFF439RLW.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF851YTF bigWig bigWig signal of unique reads dm3 ENCSR680BUH Control ChIP-seq /fly-donors/ENCDO281NCV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41697/'], '@type': ['Target', 'Item'], 'name': 'ems-dmelanogaster', 'label': 'ems', '@id': '/targets/ems-dmelanogaster/', 'title': 'ems (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '330f9b0d-a588-49da-8543-a4b904341449', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF439RLW/ 15371986 Kevin White, UChicago 7be9559bd2659ec6df9d77cf646fa931 https://www.encodeproject.org/files/ENCFF851YTF/@@download/ENCFF851YTF.bigWig released s3://encode-public/2015/10/05/1fbbf60c-0f8c-470d-ba33-b12248c837e7/ENCFF851YTF.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF175ATZ bigWig bigWig read-depth normalized signal dm3 ENCSR680BUH Control ChIP-seq /fly-donors/ENCDO281NCV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41697/'], '@type': ['Target', 'Item'], 'name': 'ems-dmelanogaster', 'label': 'ems', '@id': '/targets/ems-dmelanogaster/', 'title': 'ems (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '330f9b0d-a588-49da-8543-a4b904341449', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF439RLW/ 15409962 Kevin White, UChicago ee5e1fac0d5892a3bfc2ca5b8a7f4faf https://www.encodeproject.org/files/ENCFF175ATZ/@@download/ENCFF175ATZ.bigWig released s3://encode-public/2015/10/05/78a5e172-5337-428b-9227-dc03f8b206f3/ENCFF175ATZ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF614ADR bam bam alignments dm6 ENCSR680BUH Control ChIP-seq /fly-donors/ENCDO281NCV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41697/'], '@type': ['Target', 'Item'], 'name': 'ems-dmelanogaster', 'label': 'ems', '@id': '/targets/ems-dmelanogaster/', 'title': 'ems (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '330f9b0d-a588-49da-8543-a4b904341449', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF472VVT/ 771699185 Kevin White, UChicago 20257997b0f8a32c4fd3800c7170233e https://www.encodeproject.org/files/ENCFF614ADR/@@download/ENCFF614ADR.bam released s3://encode-public/2016/04/21/9051f6f9-442f-4ea3-acf4-0b39fc8ac9f5/ENCFF614ADR.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF064IPA bigWig bigWig read-depth normalized signal dm6 ENCSR680BUH Control ChIP-seq /fly-donors/ENCDO281NCV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41697/'], '@type': ['Target', 'Item'], 'name': 'ems-dmelanogaster', 'label': 'ems', '@id': '/targets/ems-dmelanogaster/', 'title': 'ems (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '330f9b0d-a588-49da-8543-a4b904341449', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF614ADR/ 17503712 Kevin White, UChicago 1768fc6787d3c5ce68223e0c3bb98133 https://www.encodeproject.org/files/ENCFF064IPA/@@download/ENCFF064IPA.bigWig released s3://encode-public/2016/06/20/176168b1-f374-4a8a-ba4d-a56b2a639229/ENCFF064IPA.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF491OOF bigWig bigWig signal of unique reads dm6 ENCSR680BUH Control ChIP-seq /fly-donors/ENCDO281NCV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41697/'], '@type': ['Target', 'Item'], 'name': 'ems-dmelanogaster', 'label': 'ems', '@id': '/targets/ems-dmelanogaster/', 'title': 'ems (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '330f9b0d-a588-49da-8543-a4b904341449', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF614ADR/ 17456736 Kevin White, UChicago f5c5ccf631a39279525b7bd28e6472a3 https://www.encodeproject.org/files/ENCFF491OOF/@@download/ENCFF491OOF.bigWig released s3://encode-public/2016/06/20/600a4e9c-9503-472d-8758-fc455aa6e17a/ENCFF491OOF.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF000BJZ bam bam alignments hg19 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000BKK/ 452227286 Bradley Bernstein, Broad 3878724135522f926fbe4b3e685522ec https://www.encodeproject.org/files/ENCFF000BJZ/@@download/ENCFF000BJZ.bam archived s3://encode-public/2010/11/16/6ba803fa-f833-4669-8324-be9516188bc4/ENCFF000BJZ.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF000BKA bam bam alignments hg19 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BKI/ 544742019 Bradley Bernstein, Broad c1f66c9e9b719ac6fdb80864e7234c5d https://www.encodeproject.org/files/ENCFF000BKA/@@download/ENCFF000BKA.bam archived s3://encode-public/2010/11/16/121789bc-0ca9-4758-9ad3-5f165983c4d1/ENCFF000BKA.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF000BKD bigWig bigWig signal hg19 ENCSR000ANN Control ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 414265246 Bradley Bernstein, Broad 78494a2dddf2a7ba5613e0adefe7370a https://www.encodeproject.org/files/ENCFF000BKD/@@download/ENCFF000BKD.bigWig archived s3://encode-public/2010/11/16/e220d507-6c20-407b-b653-090d49d973ea/ENCFF000BKD.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF000BKI fastq fastq reads ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 single-ended 530709236 Bradley Bernstein, Broad d6a733e08742ea4249d9d1b9a1a01f29 SRA:SRR10049448 https://www.encodeproject.org/files/ENCFF000BKI/@@download/ENCFF000BKI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/b3582d30-7bab-4a02-8aad-badceda10be2/ENCFF000BKI.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF000BKK fastq fastq reads ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 single-ended 670058655 Bradley Bernstein, Broad a7e40e1670edea8e44e7010711aa3eda SRA:SRR10049449 https://www.encodeproject.org/files/ENCFF000BKK/@@download/ENCFF000BKK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/0c4ae835-af93-4f85-b104-122b78e7210f/ENCFF000BKK.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF009XHG bam bam unfiltered alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BKI/, /files/ENCFF643CGH/ 733560434 ENCODE Processing Pipeline d7f5dc2a812fb681b7ce5f66c8fecc2c https://www.encodeproject.org/files/ENCFF009XHG/@@download/ENCFF009XHG.bam released s3://encode-public/2016/08/09/c45a0eb9-aca8-4e56-a348-6eec7d97a799/ENCFF009XHG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF298NLV bam bam alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BKK/ 208881916 ENCODE Processing Pipeline 2a6e814ca2378f864c66370f277991af https://www.encodeproject.org/files/ENCFF298NLV/@@download/ENCFF298NLV.bam released s3://encode-public/2016/08/09/2ceb9546-c58f-41d7-93de-41e31a280f4c/ENCFF298NLV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF791XAM bam bam alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BKI/, /files/ENCFF643CGH/ 482176570 ENCODE Processing Pipeline 88deb1e50e229edcb5dd50e88d736be7 https://www.encodeproject.org/files/ENCFF791XAM/@@download/ENCFF791XAM.bam released s3://encode-public/2016/08/09/4a3ade61-af3c-44bc-a962-621c5e1c3571/ENCFF791XAM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF698ZZD bam bam unfiltered alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BKK/ 792363746 ENCODE Processing Pipeline fd89d008d8e0821b839cb04e4e654cf5 https://www.encodeproject.org/files/ENCFF698ZZD/@@download/ENCFF698ZZD.bam released s3://encode-public/2016/08/09/c0689351-9d64-46c9-af2d-154c3f90b2c0/ENCFF698ZZD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF208RCO bam bam alignments hg19 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BKI/, /files/ENCFF807MUK/ 482372506 ENCODE Processing Pipeline 7913b5c3b7493aba47a8995b23ecce6a https://www.encodeproject.org/files/ENCFF208RCO/@@download/ENCFF208RCO.bam released s3://encode-public/2016/12/05/caf4c085-2a3a-4e99-8b9a-c94125034e5c/ENCFF208RCO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF325AJA bam bam unfiltered alignments hg19 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BKK/ 789508523 ENCODE Processing Pipeline a98926aa45596d1bce9a49cf801f49be https://www.encodeproject.org/files/ENCFF325AJA/@@download/ENCFF325AJA.bam released s3://encode-public/2016/12/05/234e6b36-1fa9-484b-81d0-1d3dcbd8a1d2/ENCFF325AJA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF130ENW bam bam unfiltered alignments hg19 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BKI/, /files/ENCFF807MUK/ 730454443 ENCODE Processing Pipeline 6f1c4ebdde78f4f8864f3d27ef4b98dc https://www.encodeproject.org/files/ENCFF130ENW/@@download/ENCFF130ENW.bam released s3://encode-public/2016/12/05/d0e5aa84-46dd-4324-a047-4836ff3ff57f/ENCFF130ENW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF003XTF bam bam alignments hg19 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BKK/ 209059461 ENCODE Processing Pipeline 779f153d880af9b85a1e9826ffe00e32 https://www.encodeproject.org/files/ENCFF003XTF/@@download/ENCFF003XTF.bam released s3://encode-public/2016/12/05/dd9c6ac1-a760-4fe1-8892-4b26b84ec7ac/ENCFF003XTF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF589EFJ tagAlign tagAlign alignments hg19 ENCSR000ANN Control ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 119267294 Anshul Kundaje, Stanford 941c93e0e9c0719d544ed8b9179876aa https://www.encodeproject.org/files/ENCFF589EFJ/@@download/ENCFF589EFJ.tagAlign.gz archived s3://encode-public/2016/07/19/a95e9988-aadf-47c7-9bbc-374a6ade211b/ENCFF589EFJ.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF394EZS bam bam unfiltered alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000BKK/, /files/ENCFF110MCL/ 793391474 ENCODE Processing Pipeline be6ec4fa7435bf3782ac2a434add8fc9 https://www.encodeproject.org/files/ENCFF394EZS/@@download/ENCFF394EZS.bam released s3://encode-public/2020/09/03/f1943535-ba1c-450f-9d23-f8ca9383f10d/ENCFF394EZS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF795FFC bam bam unfiltered alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BKI/, /files/ENCFF110MCL/ 715837189 ENCODE Processing Pipeline 4875bed002541e572bbe184eccacd1d9 https://www.encodeproject.org/files/ENCFF795FFC/@@download/ENCFF795FFC.bam released s3://encode-public/2020/09/03/81fc3323-e970-42ee-b6ca-87827d17b5c8/ENCFF795FFC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF003IHT bam bam alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BKI/, /files/ENCFF110MCL/ 526560497 ENCODE Processing Pipeline 2b286e7a97b4f89248ca0a0acfe5d3c8 https://www.encodeproject.org/files/ENCFF003IHT/@@download/ENCFF003IHT.bam released s3://encode-public/2020/09/03/b021fc52-03d0-4ff9-84d6-f4b28ffc74e6/ENCFF003IHT.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF049ADX bam bam alignments GRCh38 ENCSR000ANN Control ChIP-seq /human-donors/ENCDO341XKY/ CL:0000515 skeletal muscle myoblast primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000BKK/, /files/ENCFF110MCL/ 240635033 ENCODE Processing Pipeline ad475e812fc2722306be7d6309498d51 https://www.encodeproject.org/files/ENCFF049ADX/@@download/ENCFF049ADX.bam released s3://encode-public/2020/09/03/cfc29507-7bb1-4251-a4ff-2e7faa1abcfe/ENCFF049ADX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length insufficient read depth ENCFF043EHG fastq fastq reads ENCSR404KWM Control ChIP-seq /fly-donors/ENCDO170RMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36555/'], '@type': ['Target', 'Item'], 'name': 'mam-dmelanogaster', 'label': 'mam', '@id': '/targets/mam-dmelanogaster/', 'title': 'mam (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '85e1c574-083c-4ab8-bf06-710364cf61ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 697600369 Kevin White, UChicago 599bd6f155399cd64990e5a5ea889877 https://www.encodeproject.org/files/ENCFF043EHG/@@download/ENCFF043EHG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/07d3950e-e0fc-4c1f-bfe8-e79d92763e38/ENCFF043EHG.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF411IHO bam bam alignments dm3 ENCSR404KWM Control ChIP-seq /fly-donors/ENCDO170RMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36555/'], '@type': ['Target', 'Item'], 'name': 'mam-dmelanogaster', 'label': 'mam', '@id': '/targets/mam-dmelanogaster/', 'title': 'mam (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '85e1c574-083c-4ab8-bf06-710364cf61ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF043EHG/ 1004066502 Kevin White, UChicago 1a0c51f09e5d105b601d24a5496f1edc https://www.encodeproject.org/files/ENCFF411IHO/@@download/ENCFF411IHO.bam released s3://encode-public/2015/08/03/2832bbe8-132b-419a-bb6c-465c689306d0/ENCFF411IHO.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF304JBZ bigWig bigWig signal of unique reads dm3 ENCSR404KWM Control ChIP-seq /fly-donors/ENCDO170RMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36555/'], '@type': ['Target', 'Item'], 'name': 'mam-dmelanogaster', 'label': 'mam', '@id': '/targets/mam-dmelanogaster/', 'title': 'mam (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '85e1c574-083c-4ab8-bf06-710364cf61ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF411IHO/ 15358233 Kevin White, UChicago 92c7a96b974e4213bfe5425e8f4b81ed https://www.encodeproject.org/files/ENCFF304JBZ/@@download/ENCFF304JBZ.bigWig released s3://encode-public/2015/10/05/2d54786b-04e6-4ba0-9784-8b4d2c24c44b/ENCFF304JBZ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF437EYM bigWig bigWig read-depth normalized signal dm3 ENCSR404KWM Control ChIP-seq /fly-donors/ENCDO170RMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36555/'], '@type': ['Target', 'Item'], 'name': 'mam-dmelanogaster', 'label': 'mam', '@id': '/targets/mam-dmelanogaster/', 'title': 'mam (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '85e1c574-083c-4ab8-bf06-710364cf61ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF411IHO/ 15374745 Kevin White, UChicago 0fbcea075b855430799e87457996f40c https://www.encodeproject.org/files/ENCFF437EYM/@@download/ENCFF437EYM.bigWig released s3://encode-public/2015/10/05/92ddaa1a-78fd-4bdd-9b29-142189d2b034/ENCFF437EYM.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF924SJQ bam bam alignments dm6 ENCSR404KWM Control ChIP-seq /fly-donors/ENCDO170RMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36555/'], '@type': ['Target', 'Item'], 'name': 'mam-dmelanogaster', 'label': 'mam', '@id': '/targets/mam-dmelanogaster/', 'title': 'mam (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '85e1c574-083c-4ab8-bf06-710364cf61ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF043EHG/ 1000701267 Kevin White, UChicago 46e0da30541747e45974573b71cc5286 https://www.encodeproject.org/files/ENCFF924SJQ/@@download/ENCFF924SJQ.bam released s3://encode-public/2016/04/21/8bd76978-8acf-40f0-8adb-b8ab8287120a/ENCFF924SJQ.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF032YJX bigWig bigWig signal of unique reads dm6 ENCSR404KWM Control ChIP-seq /fly-donors/ENCDO170RMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36555/'], '@type': ['Target', 'Item'], 'name': 'mam-dmelanogaster', 'label': 'mam', '@id': '/targets/mam-dmelanogaster/', 'title': 'mam (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '85e1c574-083c-4ab8-bf06-710364cf61ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF924SJQ/ 17442948 Kevin White, UChicago 977f8ebe4efa501d9b9bcc7cdd852c5f https://www.encodeproject.org/files/ENCFF032YJX/@@download/ENCFF032YJX.bigWig released s3://encode-public/2016/06/21/09cdf2df-2b16-4225-a206-06d9183aba7d/ENCFF032YJX.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF484HBR bigWig bigWig read-depth normalized signal dm6 ENCSR404KWM Control ChIP-seq /fly-donors/ENCDO170RMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36555/'], '@type': ['Target', 'Item'], 'name': 'mam-dmelanogaster', 'label': 'mam', '@id': '/targets/mam-dmelanogaster/', 'title': 'mam (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '85e1c574-083c-4ab8-bf06-710364cf61ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF924SJQ/ 17482930 Kevin White, UChicago 568607bf7e438403d143d6f60c883b3d https://www.encodeproject.org/files/ENCFF484HBR/@@download/ENCFF484HBR.bigWig released s3://encode-public/2016/06/21/7ef1d88a-fe0a-4b72-ac8e-f60875be8603/ENCFF484HBR.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF000QVG bam bam alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QVO/ 1774634690 Richard Myers, HAIB a875b6303cb88a161946b1030e1ee761 https://www.encodeproject.org/files/ENCFF000QVG/@@download/ENCFF000QVG.bam archived s3://encode-public/2012/01/23/1efff136-0b69-4efe-89ff-c8966a2b5e85/ENCFF000QVG.bam Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVI bam bam alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 25 /files/ENCFF000QVQ/ 419964273 Richard Myers, HAIB 0bdc074206ca19d06b22843d39adb947 https://www.encodeproject.org/files/ENCFF000QVI/@@download/ENCFF000QVI.bam archived s3://encode-public/2012/01/23/59837429-aa28-4dae-b157-70ea8343190c/ENCFF000QVI.bam Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVJ bam bam alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000QVV/ 1408824545 Richard Myers, HAIB 8793ac952da6a698fb9a2d7e227546c7 https://www.encodeproject.org/files/ENCFF000QVJ/@@download/ENCFF000QVJ.bam archived s3://encode-public/2012/01/23/b377c5dc-c731-41ce-8316-f2a42146e850/ENCFF000QVJ.bam Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVK bigWig bigWig raw signal hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 27907605 Richard Myers, HAIB 330de9d759560e7a0e198ff80d050daf https://www.encodeproject.org/files/ENCFF000QVK/@@download/ENCFF000QVK.bigWig archived s3://encode-public/2012/01/23/7e5f16d0-c867-4340-a769-a8dd3d9d07ee/ENCFF000QVK.bigWig Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVM bigWig bigWig raw signal hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 33461950 Richard Myers, HAIB 6cadbc3324c05977adb3021506f89fe4 https://www.encodeproject.org/files/ENCFF000QVM/@@download/ENCFF000QVM.bigWig archived s3://encode-public/2012/01/23/b99020b7-6ddb-4afa-bfa6-bd135e86a1d6/ENCFF000QVM.bigWig Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVN bigWig bigWig raw signal hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 29489154 Richard Myers, HAIB f7d062a0d2264d6a5707fb2eeb4f6549 https://www.encodeproject.org/files/ENCFF000QVN/@@download/ENCFF000QVN.bigWig archived s3://encode-public/2012/01/23/b01f76fd-ee8c-461f-a907-749d04aba92c/ENCFF000QVN.bigWig Lab custom hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVO fastq fastq reads ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 32 single-ended 267239712 Richard Myers, HAIB f41cd046621eb6d68e03cd347990d17e https://www.encodeproject.org/files/ENCFF000QVO/@@download/ENCFF000QVO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/b0ff6afe-181f-4ba6-a4dd-e1a6d0f80fe0/ENCFF000QVO.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVQ fastq fastq reads ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 25 single-ended 313433126 Richard Myers, HAIB ffb5d7fdb3af219821d26aae76004e35 https://www.encodeproject.org/files/ENCFF000QVQ/@@download/ENCFF000QVQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/01/23/7b7e08f5-aebd-48b1-a8b8-98a82da1937b/ENCFF000QVQ.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF000QVV fastq fastq reads ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 1722099585 Richard Myers, HAIB f8d7be0fa6cd25809f051e89aa47a385 https://www.encodeproject.org/files/ENCFF000QVV/@@download/ENCFF000QVV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/d7f4aa21-710c-4eb1-bffc-eec39657db6a/ENCFF000QVV.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF687DIS bam bam unfiltered alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000QVO/ 344216420 ENCODE Processing Pipeline 523afdcb1c60171e160cbfd3472b18f4 https://www.encodeproject.org/files/ENCFF687DIS/@@download/ENCFF687DIS.bam released s3://encode-public/2016/10/26/be252ca8-2bce-455b-ad30-ae023f4db732/ENCFF687DIS.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF531HIX bam bam alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000QVO/ 164895040 ENCODE Processing Pipeline 3dc86846eacd21ec49308423f058b66f https://www.encodeproject.org/files/ENCFF531HIX/@@download/ENCFF531HIX.bam released s3://encode-public/2016/10/26/61e9a9b6-e836-483f-a6da-0a5b59a8341f/ENCFF531HIX.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF404ZBY bam bam unfiltered alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000QVV/ 2112222109 ENCODE Processing Pipeline 5f700853649fc13e7984e347dbb4e6e4 https://www.encodeproject.org/files/ENCFF404ZBY/@@download/ENCFF404ZBY.bam released s3://encode-public/2016/10/26/9973edce-df2e-4e31-b5d1-d20616b9d5d3/ENCFF404ZBY.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF575DMX bam bam alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000QVV/ 951786897 ENCODE Processing Pipeline 048452b572e9b5fe19861713db3749a6 https://www.encodeproject.org/files/ENCFF575DMX/@@download/ENCFF575DMX.bam released s3://encode-public/2016/10/26/487db2cd-19b1-44eb-a545-a4cc66c6db00/ENCFF575DMX.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF554MAD bam bam unfiltered alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 25 /files/ENCFF000QVQ/, /files/ENCFF643CGH/ 582525306 ENCODE Processing Pipeline 81bbd7fc9aaa13e47df19b6e9f51bdfc https://www.encodeproject.org/files/ENCFF554MAD/@@download/ENCFF554MAD.bam released s3://encode-public/2016/10/26/87b659c9-0520-4cd6-b423-464d11a3df89/ENCFF554MAD.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF240DER bam bam alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 25 /files/ENCFF000QVQ/, /files/ENCFF643CGH/ 280921470 ENCODE Processing Pipeline 4be10ee75b7eb60ee9ded49577b37ec3 https://www.encodeproject.org/files/ENCFF240DER/@@download/ENCFF240DER.bam released s3://encode-public/2016/10/26/b8a96aaf-e4e9-4c23-a858-7b4468ff0a5d/ENCFF240DER.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF834WYW bam bam unfiltered alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 25 /files/ENCFF000QVQ/, /files/ENCFF807MUK/ 581210392 ENCODE Processing Pipeline 5f7f48f71d6443a571a17361ce944a9c https://www.encodeproject.org/files/ENCFF834WYW/@@download/ENCFF834WYW.bam released s3://encode-public/2016/11/13/e68d3827-d217-428d-bf81-463c46b7b808/ENCFF834WYW.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF294SLK bam bam alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 25 /files/ENCFF000QVQ/, /files/ENCFF807MUK/ 281386660 ENCODE Processing Pipeline 2b8e10085905898341ec1f6cf821f6d2 https://www.encodeproject.org/files/ENCFF294SLK/@@download/ENCFF294SLK.bam released s3://encode-public/2016/11/13/039dcd4f-d859-4b35-9125-a314f0afbbb3/ENCFF294SLK.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF758SFS bam bam unfiltered alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 32 /files/ENCFF807MUK/, /files/ENCFF000QVO/ 343810447 ENCODE Processing Pipeline 8b507e80566e2e326ca0095a6229c01f https://www.encodeproject.org/files/ENCFF758SFS/@@download/ENCFF758SFS.bam released s3://encode-public/2016/11/13/0682809a-e866-46ae-a84f-7c086c6afd59/ENCFF758SFS.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF640HAH bam bam unfiltered alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000QVV/ 2106661204 ENCODE Processing Pipeline 19dff024ac097e1c037da56dcbc43e9e https://www.encodeproject.org/files/ENCFF640HAH/@@download/ENCFF640HAH.bam released s3://encode-public/2016/11/13/a3d00a41-f4ae-423a-bc51-b0ad06629124/ENCFF640HAH.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF529YDC bam bam alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 32 /files/ENCFF807MUK/, /files/ENCFF000QVO/ 165068488 ENCODE Processing Pipeline 84382928213e23b239f79e57ab6e16b0 https://www.encodeproject.org/files/ENCFF529YDC/@@download/ENCFF529YDC.bam released s3://encode-public/2016/11/13/73334a4d-b938-49f2-889a-f27fac045282/ENCFF529YDC.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF302ZHW bam bam alignments hg19 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000QVV/ 952412335 ENCODE Processing Pipeline 14529f7a781911b4ee1f73e61c2bcf78 https://www.encodeproject.org/files/ENCFF302ZHW/@@download/ENCFF302ZHW.bam released s3://encode-public/2016/11/13/93d5ff4d-e8bd-4aa6-aba3-9e2cc7a0faeb/ENCFF302ZHW.bam ENCODE3 hg19 archived low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF726HUE bam bam unfiltered alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000QVO/ 335124424 ENCODE Processing Pipeline d73434effe9f6e1f73d712cdc9b2c5fc https://www.encodeproject.org/files/ENCFF726HUE/@@download/ENCFF726HUE.bam released s3://encode-public/2021/03/18/02639a2a-94c4-400c-bd12-0eb19912a27b/ENCFF726HUE.bam ENCODE4 v1.7.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF024SBR bam bam unfiltered alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 32 /files/ENCFF110MCL/, /files/ENCFF000QVV/ 1940949654 ENCODE Processing Pipeline 5216f11e5cee2b7ff8972379bd7edea5 https://www.encodeproject.org/files/ENCFF024SBR/@@download/ENCFF024SBR.bam released s3://encode-public/2021/03/18/58d90ce6-5770-43be-a936-353dbc54f598/ENCFF024SBR.bam ENCODE4 v1.7.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF568XOQ bam bam alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000QVO/ 179121230 ENCODE Processing Pipeline eaec358a34b1b1b28daacc714d474ee6 https://www.encodeproject.org/files/ENCFF568XOQ/@@download/ENCFF568XOQ.bam released s3://encode-public/2021/03/18/6413fd68-cfaa-4325-b33b-8ffb33d2c527/ENCFF568XOQ.bam ENCODE4 v1.7.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF131TFF bam bam alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 32 /files/ENCFF110MCL/, /files/ENCFF000QVV/ 888191745 ENCODE Processing Pipeline a52be68af4648954d0ea9ee84a9aa562 https://www.encodeproject.org/files/ENCFF131TFF/@@download/ENCFF131TFF.bam released s3://encode-public/2021/03/18/50228d50-d48c-4cb9-9191-c8523aa796e1/ENCFF131TFF.bam ENCODE4 v1.7.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF977CVL bam bam alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF110MCL/, /files/ENCFF000QVO/ 149557804 ENCODE Processing Pipeline 9065b0931f5fcf9e4be3dab7a33fb767 https://www.encodeproject.org/files/ENCFF977CVL/@@download/ENCFF977CVL.bam released s3://encode-public/2021/03/18/5712ccf8-11b0-417d-8cca-ecb61b013645/ENCFF977CVL.bam ENCODE4 v1.7.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth ENCFF814EIX bam bam alignments GRCh38 ENCSR000BJU Control ChIP-seq /human-donors/ENCDO000AAR/ EFO:0005234 PFSK-1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 25 /files/ENCFF110MCL/, /files/ENCFF000QVV/ 712561275 ENCODE Processing Pipeline ff656571f0afecfc2dd8ccaf0b162fba https://www.encodeproject.org/files/ENCFF814EIX/@@download/ENCFF814EIX.bam released s3://encode-public/2021/03/18/36283d0a-e063-4129-9f85-aa98962e65fc/ENCFF814EIX.bam ENCODE4 v1.7.1 GRCh38 released low read depth, low read length, mixed read lengths, inconsistent platforms insufficient read length extremely low read length, extremely low read depth 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 37845905 Michael Snyder, Stanford a21ab7fc86d3afa645ee51524183c83b https://www.encodeproject.org/files/ENCFF324GKH/@@download/ENCFF324GKH.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/07/cdd27195-19e7-4937-8408-53154fe558f8/ENCFF324GKH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF000ZHW bam bam alignments hg19 ENCSR000DOV Control ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 4.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 34 586437170 Kevin Struhl, HMS 41601ec697408cc3e7cfe9ea9da4b1f0 https://www.encodeproject.org/files/ENCFF000ZHW/@@download/ENCFF000ZHW.bam archived 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https://www.encodeproject.org/files/ENCFF000ZHV/@@download/ENCFF000ZHV.bigWig archived s3://encode-public/2010/10/20/097bb5bc-babd-4afa-a157-11cb9e5e348c/ENCFF000ZHV.bigWig Lab custom hg19 archived missing genetic modification characterization, low read length, missing biosample characterization ENCFF000ZIT fastq fastq reads ENCSR000DOV Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 4.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} 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{'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZIT/ 909240885 ENCODE Processing Pipeline 272cb8e85a2b975273db4d504538001a https://www.encodeproject.org/files/ENCFF750OQW/@@download/ENCFF750OQW.bam released s3://encode-public/2020/10/27/7e364f16-fe9f-47dd-8b3c-2c4cc9609fbb/ENCFF750OQW.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, missing biosample characterization ENCFF628MZA bam bam unfiltered alignments GRCh38 ENCSR000DOV Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 4.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZIT/ 1149041477 ENCODE Processing Pipeline 303aeceb8ad2476676d8dd6721778bbf https://www.encodeproject.org/files/ENCFF628MZA/@@download/ENCFF628MZA.bam released s3://encode-public/2020/10/27/62daf354-c977-4ba4-ae1b-0af9b2f14fe3/ENCFF628MZA.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, missing biosample characterization ENCFF660CHB fastq fastq reads ENCSR087KJY Control ChIP-seq /worm-donors/ENCDO985VBX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 177946811 Michael Snyder, Stanford d15830b25736ac163212c983e5ad35db https://www.encodeproject.org/files/ENCFF660CHB/@@download/ENCFF660CHB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/04/06/5f8ab224-be2d-4654-ad95-30e38600390a/ENCFF660CHB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF334XOA fastq fastq reads ENCSR087KJY Control ChIP-seq /worm-donors/ENCDO985VBX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 183024803 Michael Snyder, Stanford 9db2e053eee86e5dfec21a48724b70e8 https://www.encodeproject.org/files/ENCFF334XOA/@@download/ENCFF334XOA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/04/06/f3823fcb-ca43-4685-ac82-aea9ece72ecc/ENCFF334XOA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF435ARJ bam bam alignments ce10 ENCSR087KJY Control ChIP-seq /worm-donors/ENCDO985VBX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF660CHB/, /files/ENCFF334XOA/, /files/ENCFF987UMF/ 437359065 Kevin White, UChicago 74b2689d423f2fd001c30d3173bb9280 https://www.encodeproject.org/files/ENCFF435ARJ/@@download/ENCFF435ARJ.bam released s3://encode-public/2016/10/18/f5909c72-f7a5-482e-b09a-6c5b1aacde03/ENCFF435ARJ.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF867VHK bam bam alignments ce11 ENCSR087KJY Control ChIP-seq /worm-donors/ENCDO985VBX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF660CHB/, /files/ENCFF334XOA/, /files/ENCFF586MOL/ 437773929 Kevin White, UChicago e34e3b533807abaaa81176300782cd94 https://www.encodeproject.org/files/ENCFF867VHK/@@download/ENCFF867VHK.bam released s3://encode-public/2016/10/18/0722146a-9b8a-4959-957c-e4194b51eb80/ENCFF867VHK.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF374DUG bigWig bigWig signal of unique reads ce10 ENCSR087KJY Control ChIP-seq /worm-donors/ENCDO985VBX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF435ARJ/ 10046759 Kevin White, UChicago 1931a30972c01c465fbc31ecf52429c2 https://www.encodeproject.org/files/ENCFF374DUG/@@download/ENCFF374DUG.bigWig released s3://encode-public/2016/10/20/cc7ea23c-1968-47cd-84de-fa17f3cdd38b/ENCFF374DUG.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF416HDJ bigWig bigWig read-depth normalized signal ce10 ENCSR087KJY Control ChIP-seq /worm-donors/ENCDO985VBX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF435ARJ/ 9989438 Kevin White, UChicago 5ec9f6084782f0b3663dd5555fc5d420 https://www.encodeproject.org/files/ENCFF416HDJ/@@download/ENCFF416HDJ.bigWig released s3://encode-public/2016/10/20/ac93d18b-56b6-4c94-b934-1fe3f584faa2/ENCFF416HDJ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF037PWI bigWig bigWig read-depth normalized signal ce11 ENCSR087KJY Control ChIP-seq /worm-donors/ENCDO985VBX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF867VHK/ 10045748 Kevin White, UChicago e7b62d300d0a8c2107bf7cad791c2fea https://www.encodeproject.org/files/ENCFF697RTA/@@download/ENCFF697RTA.bigWig released s3://encode-public/2016/10/21/8384d8d4-e81e-4d72-964b-6546d8f76605/ENCFF697RTA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF001KRW bam bam alignments mm9 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KSH/ 511309230 Bing Ren, UCSD b3a5d9ca69746d55840bedb48fc9382b https://www.encodeproject.org/files/ENCFF001KRW/@@download/ENCFF001KRW.bam archived s3://encode-public/2011/12/23/70958927-3e41-4c5e-ad32-b6803b01dc88/ENCFF001KRW.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KRX bam bam alignments mm9 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KSJ/ 374471331 Bing Ren, UCSD 4f1ab0850963c6cd7aea129da8f53472 https://www.encodeproject.org/files/ENCFF001KRX/@@download/ENCFF001KRX.bam archived s3://encode-public/2011/12/23/deec0eb8-4e6f-4928-a8d3-814f670f3504/ENCFF001KRX.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KSA bigWig bigWig signal mm9 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KRW/, /files/ENCFF001KRX/ 85578731 Bing Ren, UCSD 9fbe35f3a5c40b943e9c622b0806fb71 https://www.encodeproject.org/files/ENCFF001KSA/@@download/ENCFF001KSA.bigWig archived s3://encode-public/2011/12/23/115dbfee-c79b-4250-a040-90a469d5f6f3/ENCFF001KSA.bigWig Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KSH fastq fastq reads ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 single-ended 754054467 Bing Ren, UCSD 63548843d2f02d9c2c5a6fb0fb06e300 https://www.encodeproject.org/files/ENCFF001KSH/@@download/ENCFF001KSH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/c6b62849-5d27-44b8-af59-54ef2cddc4ef/ENCFF001KSH.fastq.gz low read depth, low read length insufficient read depth ENCFF001KSJ fastq fastq reads ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 single-ended 549736393 Bing Ren, UCSD a9d5add8fe1cab12a37ca58547994005 https://www.encodeproject.org/files/ENCFF001KSJ/@@download/ENCFF001KSJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/eb2772c8-0681-49c8-8d1d-e1ed380f8a94/ENCFF001KSJ.fastq.gz low read depth, low read length insufficient read depth ENCFF744JMO bam bam unfiltered alignments mm10-minimal ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KSH/, /files/ENCFF806TVZ/ 884358264 J. Michael Cherry, Stanford d07dbd7eb02b277826c37381efe07aaf https://www.encodeproject.org/files/ENCFF744JMO/@@download/ENCFF744JMO.bam archived s3://encode-public/2015/02/04/27ec922b-f39a-4eae-8cd9-117cf92f4c45/ENCFF744JMO.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF290AFZ bam bam unfiltered alignments mm10-minimal ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001KSJ/ 630552276 J. Michael Cherry, Stanford 0607cf032710fd473398a4809985271d https://www.encodeproject.org/files/ENCFF290AFZ/@@download/ENCFF290AFZ.bam archived s3://encode-public/2015/02/04/f654479a-b485-49d2-8ea2-5f7cc69f85c8/ENCFF290AFZ.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF371CWA bam bam alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KSH/ 594300085 ENCODE Processing Pipeline 583614381f6cc9a276726d7cecc31f95 https://www.encodeproject.org/files/ENCFF371CWA/@@download/ENCFF371CWA.bam released s3://encode-public/2016/04/28/b95c03e1-64b1-4c3b-a017-70b552ab81fd/ENCFF371CWA.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF543ZOX bam bam alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KSJ/ 400552795 ENCODE Processing Pipeline d892cf60367968d6961efe9a0dc99d46 https://www.encodeproject.org/files/ENCFF543ZOX/@@download/ENCFF543ZOX.bam released s3://encode-public/2016/04/28/7cf55366-530c-4315-aff5-18cc73659ae9/ENCFF543ZOX.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF625HMC bam bam unfiltered alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KSH/ 885515770 ENCODE Processing Pipeline 780924101ce3c16834ce7ef21088b04d https://www.encodeproject.org/files/ENCFF625HMC/@@download/ENCFF625HMC.bam released s3://encode-public/2016/07/06/7f10b4a4-4c98-4d61-ad87-e9ad6c91a125/ENCFF625HMC.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF070EMU bam bam unfiltered alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KSJ/ 631355339 ENCODE Processing Pipeline 72ec285c7cb10a479c0bd0ade74713ec https://www.encodeproject.org/files/ENCFF070EMU/@@download/ENCFF070EMU.bam released s3://encode-public/2016/07/06/d179f6ed-acd1-4544-a155-a5e35f40a7d2/ENCFF070EMU.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF551DRW bam bam unfiltered alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KSH/, /files/ENCFF309GLL/ 865982586 ENCODE Processing Pipeline d9860c15a1cead2e59b65d04f6ca2dd4 https://www.encodeproject.org/files/ENCFF551DRW/@@download/ENCFF551DRW.bam released s3://encode-public/2020/10/12/d6aa1a42-2b65-4055-9b3b-ab22e148373f/ENCFF551DRW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF614CTN bam bam unfiltered alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KSJ/, /files/ENCFF309GLL/ 619253497 ENCODE Processing Pipeline 8303fd344d48b414d61aeea9bf4fdefb https://www.encodeproject.org/files/ENCFF614CTN/@@download/ENCFF614CTN.bam released s3://encode-public/2020/10/12/90f340f4-5a21-42c6-afac-3e954b02da4a/ENCFF614CTN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF066YSN bam bam alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KSJ/, /files/ENCFF309GLL/ 428499834 ENCODE Processing Pipeline a3519eb13894e1b5ab5230e09afbeed7 https://www.encodeproject.org/files/ENCFF066YSN/@@download/ENCFF066YSN.bam released s3://encode-public/2020/10/12/44183440-9eff-4ede-b3e3-0df3f6c981f7/ENCFF066YSN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF698FQP bam bam alignments mm10 ENCSR000CCG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002264 olfactory bulb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KSH/, /files/ENCFF309GLL/ 637972360 ENCODE Processing Pipeline 0d54fb9648ae467a73c0ebfba2c0768d https://www.encodeproject.org/files/ENCFF698FQP/@@download/ENCFF698FQP.bam released s3://encode-public/2020/10/12/b0d97518-8485-4a07-a199-b126029b50b9/ENCFF698FQP.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF427FEJ fastq fastq reads ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 144558408 Michael Snyder, Stanford a0bec26480cafcd01dbf22fdd9303983 https://www.encodeproject.org/files/ENCFF427FEJ/@@download/ENCFF427FEJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0111c268-692c-4264-a3ca-e7522e4ed698/ENCFF427FEJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF505IGA fastq fastq reads ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 32 single-ended 119570294 Michael Snyder, Stanford 340ddf0cbf6721cc189a97566eb3cb65 https://www.encodeproject.org/files/ENCFF505IGA/@@download/ENCFF505IGA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bcf1ad12-99e7-44bb-aefc-f8e748cfe6eb/ENCFF505IGA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF163XLC fastq fastq reads ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 135754361 Michael Snyder, Stanford d77ec49d6f2a3f985e9f26d8566839d5 https://www.encodeproject.org/files/ENCFF163XLC/@@download/ENCFF163XLC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6885e8f2-4d20-47cd-8204-cdc431f5e6d1/ENCFF163XLC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF543PET fastq fastq reads ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 4 4_1 32 single-ended 116552484 Michael Snyder, Stanford ead018349e5a7130f57d341329a6f139 https://www.encodeproject.org/files/ENCFF543PET/@@download/ENCFF543PET.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fbce4dcb-5213-4970-afdd-f2348593a400/ENCFF543PET.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF371CXL fastq fastq reads ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 5 5_1 32 single-ended 92310666 Michael Snyder, Stanford a626c3c804d097148d814ddcec2cf7c0 https://www.encodeproject.org/files/ENCFF371CXL/@@download/ENCFF371CXL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/b2405a52-a507-4019-b4a2-1db956779a5c/ENCFF371CXL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF455ASM bam bam alignments ce10 ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF427FEJ/, /files/ENCFF163XLC/, /files/ENCFF505IGA/, /files/ENCFF987UMF/ 799363979 Kevin White, UChicago ca99191a96ea1a39b3b19fc26b2ed3ec https://www.encodeproject.org/files/ENCFF455ASM/@@download/ENCFF455ASM.bam released s3://encode-public/2017/04/27/6e9ff916-f887-4c09-a07c-f3ec78d083e6/ENCFF455ASM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF254TWF bam bam alignments ce11 ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4, 5 1_1, 2_1, 3_1, 4_1, 5_1 32 /files/ENCFF427FEJ/, /files/ENCFF163XLC/, /files/ENCFF505IGA/, /files/ENCFF586MOL/, /files/ENCFF543PET/, /files/ENCFF371CXL/ 800269791 Kevin White, UChicago c7ac4872131343e69cc2f01728752461 https://www.encodeproject.org/files/ENCFF254TWF/@@download/ENCFF254TWF.bam released s3://encode-public/2017/04/27/53cd0f5f-b18a-4808-8aec-b05152ee6a43/ENCFF254TWF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF766COL bigWig bigWig signal of unique reads ce10 ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF455ASM/ 9973101 Kevin White, UChicago 65e2da30b0a8c5a5985688c03412bb8e https://www.encodeproject.org/files/ENCFF766COL/@@download/ENCFF766COL.bigWig released s3://encode-public/2017/04/29/888a1631-7d6e-4861-acc5-c7c6b2bae3de/ENCFF766COL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF810PWX bigWig bigWig read-depth normalized signal ce10 ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF455ASM/ 9972894 Kevin White, UChicago 5807248f25615b3de859f1163a9dac1e https://www.encodeproject.org/files/ENCFF810PWX/@@download/ENCFF810PWX.bigWig released s3://encode-public/2017/04/29/d677e8fd-934e-4fe9-a5dc-ad86f84f8fcc/ENCFF810PWX.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF908VDA bigWig bigWig read-depth normalized signal ce11 ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4, 5 1_1, 2_1, 3_1, 4_1, 5_1 /files/ENCFF254TWF/ 9966822 Kevin White, UChicago ca6c98372b5f088854d2a7f7cf518190 https://www.encodeproject.org/files/ENCFF908VDA/@@download/ENCFF908VDA.bigWig released s3://encode-public/2017/04/29/2f68306c-7ca1-4cfe-989b-b2348b3b16aa/ENCFF908VDA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF476YLG bigWig bigWig signal of unique reads ce11 ENCSR649KYB Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4, 5 1_1, 2_1, 3_1, 4_1, 5_1 /files/ENCFF254TWF/ 9969405 Kevin White, UChicago f83ff8421b99fe2e59ab10802200c0cb https://www.encodeproject.org/files/ENCFF476YLG/@@download/ENCFF476YLG.bigWig released s3://encode-public/2017/04/29/753dbac5-b92a-4f75-956d-f8a7e12f6e1c/ENCFF476YLG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF000RVH bigWig bigWig signal hg19 ENCSR000DLX Control ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 4307622536 Vishwanath Iyer, UTA 4ca75b710935db81dc09a4f2a9d5cecc https://www.encodeproject.org/files/ENCFF000RVH/@@download/ENCFF000RVH.bigWig archived s3://encode-public/2012/07/26/bc0fc635-dbbc-4e4a-b56d-892f75fab534/ENCFF000RVH.bigWig Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF000RVJ bam bam alignments hg19 ENCSR000DLX Control ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 36 581348846 Vishwanath Iyer, UTA 1d0b2378e7327fefb5b81a7fe9029251 https://www.encodeproject.org/files/ENCFF000RVJ/@@download/ENCFF000RVJ.bam archived s3://encode-public/2012/07/26/8c31f113-0ada-4dc1-bd38-1707c18787db/ENCFF000RVJ.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF000RVO fastq fastq reads ENCSR000DLX Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 509275941 Vishwanath Iyer, UTA 1243f5fc0b82f2f059ddf6b81c886a82 https://www.encodeproject.org/files/ENCFF000RVO/@@download/ENCFF000RVO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/354dc891-3813-488e-b568-9dcbe4fe5eb2/ENCFF000RVO.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF130WKH bam bam unfiltered alignments GRCh38 ENCSR000DLX Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF000RVO/, /files/ENCFF110MCL/ 680998243 ENCODE Processing Pipeline 03783f5911b652190d8c17bd4889632a https://www.encodeproject.org/files/ENCFF130WKH/@@download/ENCFF130WKH.bam released s3://encode-public/2020/09/03/01519803-d37a-4ded-91d0-42e58cc3ca82/ENCFF130WKH.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF229NVB bam bam alignments GRCh38 ENCSR000DLX Control ChIP-seq /human-donors/ENCDO000AAS/ CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF000RVO/, /files/ENCFF110MCL/ 458683554 ENCODE Processing Pipeline c9c586beae6ec2919929e78185a6f7e1 https://www.encodeproject.org/files/ENCFF229NVB/@@download/ENCFF229NVB.bam released s3://encode-public/2020/09/03/807a3237-6771-4b17-9cb6-0136fe0d3242/ENCFF229NVB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF000XSW bam bam alignments hg19 ENCSR000EVT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF000XTE/ 1268000745 Peggy Farnham, USC 90c64ddd23e702b83b4b40cfb3821620 https://www.encodeproject.org/files/ENCFF000XSW/@@download/ENCFF000XSW.bam archived s3://encode-public/2010/12/06/b130fc86-6454-44bb-a725-a1ad74846088/ENCFF000XSW.bam Lab custom hg19 archived low read depth insufficient read length ENCFF000XSX bigWig bigWig signal hg19 ENCSR000EVT Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 381714951 Peggy Farnham, USC 7c9e5a99d59426fa82bc2b6f961ed083 https://www.encodeproject.org/files/ENCFF000XSX/@@download/ENCFF000XSX.bigWig archived s3://encode-public/2010/12/06/c0b70b09-e275-4617-b171-e19b0ce252ba/ENCFF000XSX.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000XTE fastq fastq reads ENCSR000EVT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 single-ended 952457065 Peggy Farnham, USC 3ab0e3771c9a37e46738e04e2028482f https://www.encodeproject.org/files/ENCFF000XTE/@@download/ENCFF000XTE.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2010/12/06/c2753df6-ea90-4d84-a289-93d1c89790ce/ENCFF000XTE.fastq.gz low read depth insufficient read length ENCFF023RXC bam bam unfiltered alignments GRCh38 ENCSR000EVT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000XTE/ 1273711861 ENCODE Processing Pipeline 5f29628fa7673c7bbb13e2adfa6fa32d https://www.encodeproject.org/files/ENCFF023RXC/@@download/ENCFF023RXC.bam released s3://encode-public/2016/10/26/c55a2e76-361b-4d0c-91e5-e72ccd27f9af/ENCFF023RXC.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF823ARV bam bam alignments GRCh38 ENCSR000EVT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000XTE/ 713502341 ENCODE Processing Pipeline 0214bf82b6b41daf040a2ad1152b2d94 https://www.encodeproject.org/files/ENCFF823ARV/@@download/ENCFF823ARV.bam released s3://encode-public/2016/10/26/ae6fc967-dce2-4f03-9040-9fe3f027ef9f/ENCFF823ARV.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF581DLY bam bam unfiltered alignments GRCh38 ENCSR000EVT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000XTE/ 1229724383 ENCODE Processing Pipeline 604abbb4589c81d20b97c7fde4395322 https://www.encodeproject.org/files/ENCFF581DLY/@@download/ENCFF581DLY.bam released s3://encode-public/2020/10/27/f9c1c89c-6b92-4fd9-b6d8-08ad37e6f95f/ENCFF581DLY.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF674OWW bam bam alignments GRCh38 ENCSR000EVT Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000XTE/ 707186540 ENCODE Processing Pipeline 7372a7a2309c8d2ff70cc4acf1d0331f https://www.encodeproject.org/files/ENCFF674OWW/@@download/ENCFF674OWW.bam released s3://encode-public/2020/10/27/3c605519-cd67-4ada-963f-a84d864a25f2/ENCFF674OWW.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF279ELY fastq fastq reads ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 114034004 Michael Snyder, Stanford 70a5d599abeff2522142a4160d0edde5 https://www.encodeproject.org/files/ENCFF279ELY/@@download/ENCFF279ELY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/93cc643e-f636-4a4f-81e6-a5f1241f1d0d/ENCFF279ELY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF079XPD fastq fastq reads ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 112252157 Michael Snyder, Stanford 43a8bd77138a2459864df912ad616a49 https://www.encodeproject.org/files/ENCFF079XPD/@@download/ENCFF079XPD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c965a119-56be-4ccc-bd8a-cdc0e1b19205/ENCFF079XPD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF697ADR bam bam alignments ce10 ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF279ELY/, /files/ENCFF079XPD/, /files/ENCFF987UMF/ 297884609 Kevin White, UChicago 0e8bc0a6239829d012ccea2187c6ad78 https://www.encodeproject.org/files/ENCFF697ADR/@@download/ENCFF697ADR.bam released s3://encode-public/2016/10/18/d9a66a53-ed59-4dc0-ba1c-d90d4e9498df/ENCFF697ADR.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF679QGK bam bam alignments ce11 ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF279ELY/, /files/ENCFF079XPD/, /files/ENCFF586MOL/ 298218701 Kevin White, UChicago 52e293099d71235978430b0cacfb4763 https://www.encodeproject.org/files/ENCFF679QGK/@@download/ENCFF679QGK.bam released s3://encode-public/2016/10/19/f1121fa3-3166-4f05-a950-99c099ddc9e3/ENCFF679QGK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF177EEY bigWig bigWig read-depth normalized signal ce10 ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF697ADR/ 9974253 Kevin White, UChicago 9cf2dba0c95056dcde6d87e7537df475 https://www.encodeproject.org/files/ENCFF177EEY/@@download/ENCFF177EEY.bigWig released s3://encode-public/2016/10/20/9c971b40-d594-466d-b603-4c12f162b59a/ENCFF177EEY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF729YOI bigWig bigWig signal of unique reads ce10 ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF697ADR/ 10038569 Kevin White, UChicago e33b964bddd8a97008ef7f44bf94a0ad https://www.encodeproject.org/files/ENCFF729YOI/@@download/ENCFF729YOI.bigWig released s3://encode-public/2016/10/20/5d8a5f97-0ad1-4649-95f6-638d7f4ef622/ENCFF729YOI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF988GQY bigWig bigWig read-depth normalized signal ce11 ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF679QGK/ 9976131 Kevin White, UChicago cd3d784f52832c6c6552f12f8383a4dd https://www.encodeproject.org/files/ENCFF988GQY/@@download/ENCFF988GQY.bigWig released s3://encode-public/2016/10/21/93c77b5a-541b-4d3e-9aa4-2a42e8c524ef/ENCFF988GQY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF166JCF bigWig bigWig signal of unique reads ce11 ENCSR287RHD Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF679QGK/ 10036999 Kevin White, UChicago a4fa0c51066ee023b7c7670908e3e785 https://www.encodeproject.org/files/ENCFF166JCF/@@download/ENCFF166JCF.bigWig released s3://encode-public/2016/10/21/d3b342a8-20fc-4e34-a0af-b393aff5bdaf/ENCFF166JCF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF001NTD fastq fastq reads ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 1 1_1 36 single-ended 1006034741 Michael Snyder, Stanford c0ec135e18da3fa32128d450227aad80 https://www.encodeproject.org/files/ENCFF001NTD/@@download/ENCFF001NTD.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/08/01/fd11e31d-0b41-4c88-9dcb-13199cbddc6b/ENCFF001NTD.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF001NTH bigWig bigWig signal mm9 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 1 1_1 /files/ENCFF001NTI/ 350322594 Michael Snyder, Stanford a170de9cfac5db38214005379042dd8b https://www.encodeproject.org/files/ENCFF001NTH/@@download/ENCFF001NTH.bigWig archived s3://encode-public/2012/08/01/2dde960a-0084-452b-81c6-09e1a4f67868/ENCFF001NTH.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, low read length ENCFF001NTI bam bam alignments mm9 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 1 1_1 27 /files/ENCFF001NTD/ 909280083 Michael Snyder, Stanford 4af93b1ea955dc2d53ec96ace5572a67 https://www.encodeproject.org/files/ENCFF001NTI/@@download/ENCFF001NTI.bam archived s3://encode-public/2012/08/01/23feecb5-28af-4622-aa9a-45c26999dc96/ENCFF001NTI.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, low read length ENCFF001NTF fastq fastq reads ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 2 2_1 36 single-ended 969057851 Michael Snyder, Stanford d1fe255f122110d491209723b8ae0f96 https://www.encodeproject.org/files/ENCFF001NTF/@@download/ENCFF001NTF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/08/01/f822a231-c356-4a3e-b634-3bf9988c34c2/ENCFF001NTF.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF025XNP bam bam unfiltered alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTD/ 1108034731 ENCODE Processing Pipeline 41d5be3db13dcb9163fb1ad3b72a6d41 https://www.encodeproject.org/files/ENCFF025XNP/@@download/ENCFF025XNP.bam released s3://encode-public/2016/10/26/5bce7bbc-b979-494f-8e6e-d44b6d6a512b/ENCFF025XNP.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF951ALL bam bam alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTD/ 690243677 ENCODE Processing Pipeline 2a47875834f2b8f44b1fe34c13a1c8ee https://www.encodeproject.org/files/ENCFF951ALL/@@download/ENCFF951ALL.bam released s3://encode-public/2016/10/26/e0d3a848-1e2a-480f-be53-3751d5af6ff0/ENCFF951ALL.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF386FUO bam bam unfiltered alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 2 2_1 36 /files/ENCFF001NTF/, /files/ENCFF018NEO/ 1093686487 ENCODE Processing Pipeline d7c653ab5d91797d6b24421d5b9ac9fb https://www.encodeproject.org/files/ENCFF386FUO/@@download/ENCFF386FUO.bam released s3://encode-public/2016/10/26/1b4e9492-fe80-41af-a320-5a2cccbf1f26/ENCFF386FUO.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF893WLX bam bam alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 2 2_1 36 /files/ENCFF001NTF/, /files/ENCFF018NEO/ 695145042 ENCODE Processing Pipeline 52da6a05e982ff36f9a8a48bd2cbe51e https://www.encodeproject.org/files/ENCFF893WLX/@@download/ENCFF893WLX.bam released s3://encode-public/2016/10/26/30007c48-454e-4451-aae1-cdb27fd22ec3/ENCFF893WLX.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF050NTI bam bam alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTF/ 737981243 ENCODE Processing Pipeline bc178bd1480cbd3cb6ab06d5dfa39dfe https://www.encodeproject.org/files/ENCFF050NTI/@@download/ENCFF050NTI.bam released s3://encode-public/2020/11/06/c3c2d936-452f-4622-9b94-836199b26659/ENCFF050NTI.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF307YYO bam bam unfiltered alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTF/ 1071546555 ENCODE Processing Pipeline d90a000d21468be756f9ac28a3db357c https://www.encodeproject.org/files/ENCFF307YYO/@@download/ENCFF307YYO.bam released s3://encode-public/2020/11/06/e3faa7db-9f8a-4ffd-bf3c-a433fab05995/ENCFF307YYO.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF294LMH bam bam unfiltered alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTD/ 1086025533 ENCODE Processing Pipeline c8e66415935176ec1693ae0553ef69a2 https://www.encodeproject.org/files/ENCFF294LMH/@@download/ENCFF294LMH.bam released s3://encode-public/2020/11/06/c437c983-0ed4-4f32-8f32-68b1b94d6581/ENCFF294LMH.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF301NUR bam bam alignments mm10 ENCSR000ETD Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTD/ 731988903 ENCODE Processing Pipeline 3a1443a0f2d31f4188ff57a345f4cef6 https://www.encodeproject.org/files/ENCFF301NUR/@@download/ENCFF301NUR.bam released s3://encode-public/2020/11/06/b98390b0-31ec-44a5-9eac-81e569e79d0c/ENCFF301NUR.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF928JDF fastq fastq reads ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 155684042 Michael Snyder, Stanford 730f1974e69046c7e4c51b94d788e304 https://www.encodeproject.org/files/ENCFF928JDF/@@download/ENCFF928JDF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6cd937a1-8eb6-4e49-aa2c-0a727314b437/ENCFF928JDF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF609XIQ fastq fastq reads ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 156845938 Michael Snyder, Stanford df92b04649f9ace95f7232c93c71c39c https://www.encodeproject.org/files/ENCFF609XIQ/@@download/ENCFF609XIQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e45f306e-5d93-42c5-a1e9-496d8d717c63/ENCFF609XIQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF676AKM bam bam alignments ce10 ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF928JDF/, /files/ENCFF609XIQ/, /files/ENCFF987UMF/ 411296457 Kevin White, UChicago 6e63fa81e90efc75e3e86a875b8377c2 https://www.encodeproject.org/files/ENCFF676AKM/@@download/ENCFF676AKM.bam released s3://encode-public/2016/10/18/17dde258-4935-4986-b3f7-b57545c90383/ENCFF676AKM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF664CGY bam bam alignments ce11 ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF928JDF/, /files/ENCFF609XIQ/, /files/ENCFF586MOL/ 411779269 Kevin White, UChicago 51e5ae3ccad655bce2c83fd01876070e https://www.encodeproject.org/files/ENCFF664CGY/@@download/ENCFF664CGY.bam released s3://encode-public/2016/10/19/ce57e6a8-52ed-4d84-89a6-11e96a7681e3/ENCFF664CGY.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF621SIY bigWig bigWig read-depth normalized signal ce10 ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF676AKM/ 10048197 Kevin White, UChicago 20822d5e4ea021fb15531d34e8d929dd https://www.encodeproject.org/files/ENCFF621SIY/@@download/ENCFF621SIY.bigWig released s3://encode-public/2016/10/20/0bc0a085-8823-4aea-9d44-bf4816945d9e/ENCFF621SIY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF272QJY bigWig bigWig signal of unique reads ce10 ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF676AKM/ 10023382 Kevin White, UChicago 497535b8394df53a8c2dfc0e8212b141 https://www.encodeproject.org/files/ENCFF272QJY/@@download/ENCFF272QJY.bigWig released s3://encode-public/2016/10/20/f5e3697a-0b0e-44fc-8221-ef3c8b09bf8e/ENCFF272QJY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF463NNP bigWig bigWig signal of unique reads ce11 ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF664CGY/ 10026720 Kevin White, UChicago da2ea6b4fa83f94eac0b1fd72db73789 https://www.encodeproject.org/files/ENCFF463NNP/@@download/ENCFF463NNP.bigWig released s3://encode-public/2016/10/21/dc8fadb3-1ccb-4a4e-9a5d-bacff13a4c3a/ENCFF463NNP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF798MIK bigWig bigWig read-depth normalized signal ce11 ENCSR418DAW Control ChIP-seq /worm-donors/ENCDO470ATW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180505/'], '@type': ['Target', 'Item'], 'name': 'ceh-39-celegans', 'label': 'ceh-39', '@id': '/targets/ceh-39-celegans/', 'title': 'ceh-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0e9d6eee-3c33-4fa4-858f-38e43c203b33', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF664CGY/ 10045374 Kevin White, UChicago 3e3218e71ac21d80cb7b6d4c950d5354 https://www.encodeproject.org/files/ENCFF798MIK/@@download/ENCFF798MIK.bigWig released s3://encode-public/2016/10/21/8ff84704-64ed-4cb0-8ad6-93a20885076a/ENCFF798MIK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF002BXO fastq fastq reads ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 800274703 Bing Ren, UCSD 613bfa956a195ce9130ab58ba8b7e73a SRA:SRR3652972 https://www.encodeproject.org/files/ENCFF002BXO/@@download/ENCFF002BXO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/05/29/0a9bf02b-b9e1-48c9-aeb1-c7ea36803a2f/ENCFF002BXO.fastq.gz low read depth, low read length ENCFF550AJM fastq fastq reads ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 522593935 Bing Ren, UCSD 109392f2f8c85da3cca327aca9ba16e8 SRA:SRR3652971 https://www.encodeproject.org/files/ENCFF550AJM/@@download/ENCFF550AJM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/12/09/6bf98208-301f-4edb-8f58-f4df026d69e6/ENCFF550AJM.fastq.gz low read depth, low read length ENCFF262ZHI bam bam unfiltered alignments mm10-minimal ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXO/ 1026048406 ENCODE Processing Pipeline e303b8cbe4c9bf8122418c7e0d714634 https://www.encodeproject.org/files/ENCFF262ZHI/@@download/ENCFF262ZHI.bam archived s3://encode-public/2015/02/09/539589dd-c93a-4745-9987-993b4a5382d5/ENCFF262ZHI.bam low read depth, low read length ENCFF209SIX bam bam unfiltered alignments mm10-minimal ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF550AJM/ 706538439 ENCODE Processing Pipeline 53d6f53444dca2e33a808874983c379d https://www.encodeproject.org/files/ENCFF209SIX/@@download/ENCFF209SIX.bam archived s3://encode-public/2015/02/09/233a9c7e-47f0-46d4-bf1c-90d4db715724/ENCFF209SIX.bam low read depth, low read length ENCFF562EMV bam bam alignments mm10-minimal ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXO/ 606336374 ENCODE Processing Pipeline 517cb0141a7df867a917e4afd800c27f https://www.encodeproject.org/files/ENCFF562EMV/@@download/ENCFF562EMV.bam archived s3://encode-public/2015/03/20/fb78beb8-b33b-4aba-91d3-8d5791986760/ENCFF562EMV.bam low read depth, low read length ENCFF623BMA bam bam alignments mm10-minimal ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF550AJM/ 453274271 ENCODE Processing Pipeline d30cf909ecd044e0cc8e16df8aecdc84 https://www.encodeproject.org/files/ENCFF623BMA/@@download/ENCFF623BMA.bam archived s3://encode-public/2015/03/20/31c65162-d406-4b47-9cc6-2f7fc80c463a/ENCFF623BMA.bam low read depth, low read length ENCFF500SQT bam bam unfiltered alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXO/ 1027650666 ENCODE Processing Pipeline cbaa6efbf5086b5cb5224e6ff7e20fcd https://www.encodeproject.org/files/ENCFF500SQT/@@download/ENCFF500SQT.bam released s3://encode-public/2016/05/20/02a0f481-a397-44a6-9f65-02b8a07efe92/ENCFF500SQT.bam ENCODE3 mm10 archived low read depth, low read length ENCFF078ILT bam bam unfiltered alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF550AJM/ 707922209 ENCODE Processing Pipeline 99a78e5630030a52432a828ba85f5905 https://www.encodeproject.org/files/ENCFF078ILT/@@download/ENCFF078ILT.bam released s3://encode-public/2016/05/20/9e8d93b4-0026-4bc6-b88d-4baaf24f7105/ENCFF078ILT.bam ENCODE3 mm10 archived low read depth, low read length ENCFF995XOU bam bam alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXO/ 606089474 ENCODE Processing Pipeline 0298e4fd869982f31a73cd10b6c80ca6 https://www.encodeproject.org/files/ENCFF995XOU/@@download/ENCFF995XOU.bam released s3://encode-public/2016/05/20/79962dc9-2b2e-45f3-b061-ae973460d0c2/ENCFF995XOU.bam ENCODE3 mm10 archived low read depth, low read length ENCFF903NWQ bam bam alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF550AJM/ 453081246 ENCODE Processing Pipeline a29c7951d73ce1e28fb8e637a2f42eef https://www.encodeproject.org/files/ENCFF903NWQ/@@download/ENCFF903NWQ.bam released s3://encode-public/2016/05/20/5e393bfb-6fe4-4853-9f45-7eea23d663bf/ENCFF903NWQ.bam ENCODE3 mm10 archived low read depth, low read length ENCFF886PCA bam bam unfiltered alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF550AJM/, /files/ENCFF309GLL/ 687505696 ENCODE Processing Pipeline 27da4e044e122de500640f14ab9fdf74 https://www.encodeproject.org/files/ENCFF886PCA/@@download/ENCFF886PCA.bam released s3://encode-public/2020/10/07/72e2f416-d896-43a7-8568-c7c261df467d/ENCFF886PCA.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF002JSJ bam bam alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXO/, /files/ENCFF309GLL/ 651406106 ENCODE Processing Pipeline 5ec171156c0087e1fc13051067921864 https://www.encodeproject.org/files/ENCFF002JSJ/@@download/ENCFF002JSJ.bam released s3://encode-public/2020/10/07/8e2be230-4e94-4fbd-8d73-56b121593908/ENCFF002JSJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF730MVX bam bam alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF550AJM/, /files/ENCFF309GLL/ 488807067 ENCODE Processing Pipeline 4c7dfffec7e15e13c85169ab092d5d31 https://www.encodeproject.org/files/ENCFF730MVX/@@download/ENCFF730MVX.bam released s3://encode-public/2020/10/07/a5e296c6-9ec1-4e08-a8b6-13007e4644de/ENCFF730MVX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF009WUU bam bam unfiltered alignments mm10 ENCSR752KDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXO/, /files/ENCFF309GLL/ 999054884 ENCODE Processing Pipeline ce5d6c5f5b03b06d04136acaef7d0aad https://www.encodeproject.org/files/ENCFF009WUU/@@download/ENCFF009WUU.bam released s3://encode-public/2020/10/07/5ef8c964-b3b7-41b0-b681-469676e1135e/ENCFF009WUU.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF996BKN fastq fastq reads ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 121812540 Michael Snyder, Stanford 511c620662535b968253e483d12e7d32 https://www.encodeproject.org/files/ENCFF996BKN/@@download/ENCFF996BKN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fde819f1-2220-42a5-a25c-be6a3c992d79/ENCFF996BKN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF782LVB fastq fastq reads ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 136657555 Michael Snyder, Stanford 0441c9800bdebd57efaa36dcccfba1f5 https://www.encodeproject.org/files/ENCFF782LVB/@@download/ENCFF782LVB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/efec5f7b-e415-4ab0-b1a5-875f74daf0f4/ENCFF782LVB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF057RMM bam bam alignments ce10 ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF996BKN/, /files/ENCFF782LVB/, /files/ENCFF987UMF/ 337331912 Kevin White, UChicago fddf63e6c08e7efb5b87a8705a9c0f50 https://www.encodeproject.org/files/ENCFF057RMM/@@download/ENCFF057RMM.bam released s3://encode-public/2016/10/18/f238bd94-4106-42f5-b38e-78e45551259a/ENCFF057RMM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF627GNS bam bam alignments ce11 ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF996BKN/, /files/ENCFF782LVB/, /files/ENCFF586MOL/ 337706628 Kevin White, UChicago 68cdcc9b71f6b80a9075d3b6a1c9b601 https://www.encodeproject.org/files/ENCFF627GNS/@@download/ENCFF627GNS.bam released s3://encode-public/2016/10/19/0260ac6c-5dbb-4feb-8bd7-cd8a47103e17/ENCFF627GNS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF517QGV bigWig bigWig read-depth normalized signal ce10 ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF057RMM/ 9970332 Kevin White, UChicago 969fe95e223a9d224a309cc833b2c9c1 https://www.encodeproject.org/files/ENCFF517QGV/@@download/ENCFF517QGV.bigWig released s3://encode-public/2016/10/20/e0a73f95-ea53-4d6c-8154-bf3bfe00d319/ENCFF517QGV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF420VBZ bigWig bigWig signal of unique reads ce10 ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF057RMM/ 10038846 Kevin White, UChicago 4d617ee527483b55f3e182fab7186409 https://www.encodeproject.org/files/ENCFF420VBZ/@@download/ENCFF420VBZ.bigWig released s3://encode-public/2016/10/20/3a7472e9-2334-47f9-879c-0f05b6787b61/ENCFF420VBZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF632QQH bigWig bigWig read-depth normalized signal ce11 ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF627GNS/ 9964258 Kevin White, UChicago 8d0631fbf0be269fa12f3c094f35640c https://www.encodeproject.org/files/ENCFF632QQH/@@download/ENCFF632QQH.bigWig released s3://encode-public/2016/10/21/4c3d9ed8-4cd0-4f0e-a8c4-12b5c4d4a8d0/ENCFF632QQH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF131LWG bigWig bigWig signal of unique reads ce11 ENCSR459YGR Control ChIP-seq /worm-donors/ENCDO573NYG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175240/'], '@type': ['Target', 'Item'], 'name': 'zip-2-celegans', 'label': 'zip-2', '@id': '/targets/zip-2-celegans/', 'title': 'zip-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3d1d7705-1b60-41f1-a70c-b82be1034d2f', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF627GNS/ 10033433 Kevin White, UChicago 1c4232577dc5afc9b784679c5dca5e84 https://www.encodeproject.org/files/ENCFF131LWG/@@download/ENCFF131LWG.bigWig released s3://encode-public/2016/10/21/da44b49b-b464-461a-b951-a853554a41fa/ENCFF131LWG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF669SCY tagAlign tagAlign alignments hg19 ENCSR980EIZ Control ChIP-seq CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 251367036 Anshul Kundaje, Stanford 9bd042eacabd54bf689e368dbfaecec2 https://www.encodeproject.org/files/ENCFF669SCY/@@download/ENCFF669SCY.tagAlign.gz archived s3://encode-public/2016/03/30/20087370-6355-4c2a-9820-4b335cd7e7f4/ENCFF669SCY.tagAlign.gz Lab custom hg19 released inconsistent ontology term ENCFF002BXR fastq fastq reads ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 1104718292 Bing Ren, UCSD 13e2b2415425d9609cd07a7397efeab9 SRA:SRR3652592 https://www.encodeproject.org/files/ENCFF002BXR/@@download/ENCFF002BXR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/05/29/76258c6a-ed0d-4041-833a-78a10ad669fa/ENCFF002BXR.fastq.gz low read length ENCFF002BXT fastq fastq reads ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1292114196 Bing Ren, UCSD 3b95306c7dd8496bcf2aa4b6aa90457e SRA:SRR3652591 https://www.encodeproject.org/files/ENCFF002BXT/@@download/ENCFF002BXT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/05/29/0c1439c2-b761-47b0-a7a8-a718b0b93ee2/ENCFF002BXT.fastq.gz low read length ENCFF369BCW bam bam unfiltered alignments mm10-minimal ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXR/, /files/ENCFF806TVZ/ 1448413113 ENCODE Processing Pipeline 733ef36c5e3b13ed95b5002c22dedf22 https://www.encodeproject.org/files/ENCFF369BCW/@@download/ENCFF369BCW.bam archived s3://encode-public/2015/02/09/4d91f7a2-4dd8-46d5-b9f0-bbd0d64a8fd2/ENCFF369BCW.bam low read length ENCFF846SCW bam bam unfiltered alignments mm10-minimal ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXT/ 1687659760 ENCODE Processing Pipeline fc2a898c00618528b1fdfb92c44902d2 https://www.encodeproject.org/files/ENCFF846SCW/@@download/ENCFF846SCW.bam archived s3://encode-public/2015/02/09/01352548-aff0-48fa-9753-74dd08eef2b9/ENCFF846SCW.bam low read length ENCFF461NAJ bam bam alignments mm10-minimal ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002BXT/ 1079445572 ENCODE Processing Pipeline d327521d5c7aa45452c839f2c4c5690e https://www.encodeproject.org/files/ENCFF461NAJ/@@download/ENCFF461NAJ.bam archived s3://encode-public/2015/03/20/1befc1c4-98d0-4d71-a577-4255375da46f/ENCFF461NAJ.bam low read length ENCFF720BSQ bam bam alignments mm10-minimal ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXR/, /files/ENCFF806TVZ/ 933154793 ENCODE Processing Pipeline 49707ca72e932c4031a4574036e844b1 https://www.encodeproject.org/files/ENCFF720BSQ/@@download/ENCFF720BSQ.bam archived s3://encode-public/2015/03/20/c0e47179-9a65-4c55-8f8a-f181ffbe15c6/ENCFF720BSQ.bam low read length ENCFF691TET bam bam unfiltered alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXT/ 1690080061 ENCODE Processing Pipeline 7b6e4e871f4b70dda69887a6e9397d0c https://www.encodeproject.org/files/ENCFF691TET/@@download/ENCFF691TET.bam released s3://encode-public/2016/05/20/7df98589-d485-477f-a619-a0e1b519a192/ENCFF691TET.bam ENCODE3 mm10 archived low read length ENCFF422NQB bam bam unfiltered alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXR/ 1450605103 ENCODE Processing Pipeline 5eec7942e96107d2bd66e75b19ce77d3 https://www.encodeproject.org/files/ENCFF422NQB/@@download/ENCFF422NQB.bam released s3://encode-public/2016/05/20/e6db5549-beed-448a-807a-cd08fde3dac2/ENCFF422NQB.bam ENCODE3 mm10 archived low read length ENCFF631VBQ bam bam alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXT/ 1079083853 ENCODE Processing Pipeline 12fc1e31f6c0e14303350e677f8da221 https://www.encodeproject.org/files/ENCFF631VBQ/@@download/ENCFF631VBQ.bam released s3://encode-public/2016/05/20/bf2bc36d-8aff-4cc3-bd7b-77dec5acd04a/ENCFF631VBQ.bam ENCODE3 mm10 archived low read length ENCFF568KLX bam bam alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002BXR/ 932838089 ENCODE Processing Pipeline 50a8b56679d6ca955992499b9ad1af93 https://www.encodeproject.org/files/ENCFF568KLX/@@download/ENCFF568KLX.bam released s3://encode-public/2016/05/20/ef93081d-abd3-4aa7-b060-19d7f8f16617/ENCFF568KLX.bam ENCODE3 mm10 archived low read length ENCFF142ZIS bam bam unfiltered alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXR/, /files/ENCFF309GLL/ 1405947124 ENCODE Processing Pipeline 4a32e43303a1582483cb40781055d0a5 https://www.encodeproject.org/files/ENCFF142ZIS/@@download/ENCFF142ZIS.bam released s3://encode-public/2020/10/08/f68dfdfb-dae9-42a5-b6c0-c79d9be785d2/ENCFF142ZIS.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF224IWQ bam bam unfiltered alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXT/, /files/ENCFF309GLL/ 1638212016 ENCODE Processing Pipeline 156e0aa5b2c365c6ff25792eef8a4946 https://www.encodeproject.org/files/ENCFF224IWQ/@@download/ENCFF224IWQ.bam released s3://encode-public/2020/10/08/4f9180b3-0458-4b95-959d-2a558dc8315b/ENCFF224IWQ.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF393ZWL bam bam alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BXR/, /files/ENCFF309GLL/ 1000002162 ENCODE Processing Pipeline f50a3dc8d0cb9da5c2387021d2fe8262 https://www.encodeproject.org/files/ENCFF393ZWL/@@download/ENCFF393ZWL.bam released s3://encode-public/2020/10/08/06c1d940-3b9c-4b06-a537-b326fc873260/ENCFF393ZWL.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF014IKI bam bam alignments mm10 ENCSR635JIC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXT/, /files/ENCFF309GLL/ 1158110092 ENCODE Processing Pipeline 5bbb9ffe385caf2bd3b04776675814e6 https://www.encodeproject.org/files/ENCFF014IKI/@@download/ENCFF014IKI.bam released s3://encode-public/2020/10/08/397e5890-13bb-4f89-bd44-18e5756ed813/ENCFF014IKI.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF000RQD bam bam alignments hg19 ENCSR000DLA Control ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 35 292760775 Vishwanath Iyer, UTA de39d0427733ca0f22fbccb0b46740a9 https://www.encodeproject.org/files/ENCFF000RQD/@@download/ENCFF000RQD.bam archived s3://encode-public/2012/07/26/12d6d1a5-f98b-4721-9b8b-b7c29350a5e9/ENCFF000RQD.bam Lab custom hg19 archived extremely low read depth ENCFF000RQE bigWig bigWig signal hg19 ENCSR000DLA Control ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 3103163124 Vishwanath Iyer, UTA 4033c9f429f77a88ebfd41df8dc74ae6 https://www.encodeproject.org/files/ENCFF000RQE/@@download/ENCFF000RQE.bigWig archived s3://encode-public/2012/07/26/92246486-7b65-4d29-b643-3e1f0c2cb8ea/ENCFF000RQE.bigWig Lab custom hg19 archived extremely low read depth ENCFF000RQY fastq fastq reads ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 400900457 Vishwanath Iyer, UTA 9915892b10701880d6f0defdac47e17d https://www.encodeproject.org/files/ENCFF000RQY/@@download/ENCFF000RQY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/fcb1ba48-79d4-4378-a901-3f5e0a44b548/ENCFF000RQY.fastq.gz extremely low read depth ENCFF345XRM bam bam unfiltered alignments hg19 ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RQY/ 455736411 ENCODE Processing Pipeline c97d4561e301b5735aa1e56116cadd7e https://www.encodeproject.org/files/ENCFF345XRM/@@download/ENCFF345XRM.bam released s3://encode-public/2018/02/22/e21bafe4-3c8a-4cad-b65c-92c937ddca99/ENCFF345XRM.bam ENCODE3 hg19 archived extremely low read depth ENCFF590UFK bam bam unfiltered alignments GRCh38-minimal ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF752DYX/, /files/ENCFF000RQY/ 456526516 J. Michael Cherry, Stanford 2fd92ae301341a77d712961d7f5a1441 https://www.encodeproject.org/files/ENCFF590UFK/@@download/ENCFF590UFK.bam released s3://encode-public/2014/12/16/bb0c1061-1dd2-4905-9c59-525437928df3/ENCFF590UFK.bam extremely low read depth ENCFF167MFG bam bam unfiltered alignments GRCh38 ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RQY/ 456740751 ENCODE Processing Pipeline b517f1510e9a76e27e1f24036bf43a1e https://www.encodeproject.org/files/ENCFF167MFG/@@download/ENCFF167MFG.bam released s3://encode-public/2016/12/03/9c68097c-b3e7-4b47-bf9b-7f6ac6316e84/ENCFF167MFG.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF467KFW bam bam alignments GRCh38 ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RQY/ 150905459 ENCODE Processing Pipeline 9b02c555a23e36b668d6f4c5e1bcd8ab https://www.encodeproject.org/files/ENCFF467KFW/@@download/ENCFF467KFW.bam released s3://encode-public/2016/12/03/41975a41-d657-40b8-9065-ce34a4cf8b0f/ENCFF467KFW.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF248LUV bam bam alignments hg19 ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RQY/ 150005587 ENCODE Processing Pipeline 11b2a9298891d538cfef0dd04f579071 https://www.encodeproject.org/files/ENCFF248LUV/@@download/ENCFF248LUV.bam released s3://encode-public/2017/04/11/f5f2461a-fc95-4a4c-92dd-c53b9edd292e/ENCFF248LUV.bam ENCODE3 hg19 archived extremely low read depth ENCFF658DZI bam bam unfiltered alignments GRCh38 ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RQY/ 473326694 ENCODE Processing Pipeline 2498263ef3d02aec808be96f93efffc5 https://www.encodeproject.org/files/ENCFF658DZI/@@download/ENCFF658DZI.bam released s3://encode-public/2020/09/03/4e3814e0-8fe2-497f-93ce-ee23f8be3614/ENCFF658DZI.bam ENCODE4 v1.5.1 GRCh38 released extremely low read depth ENCFF835JQB bam bam alignments GRCh38 ENCSR000DLA Control ChIP-seq /human-donors/ENCDO000ACB/ EFO:0005345 GM13976 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RQY/ 137552391 ENCODE Processing Pipeline 9ce928c49683f12f65e086f2ad81c6fa https://www.encodeproject.org/files/ENCFF835JQB/@@download/ENCFF835JQB.bam released s3://encode-public/2020/09/03/eca55b83-9de9-4580-8627-946c2914615d/ENCFF835JQB.bam ENCODE4 v1.5.1 GRCh38 released extremely low read depth ENCFF441WKM fastq fastq reads ENCSR820IUK Control ChIP-seq /fly-donors/ENCDO250AHM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43819/'], '@type': ['Target', 'Item'], 'name': 'pho-dmelanogaster', 'label': 'pho', '@id': '/targets/pho-dmelanogaster/', 'title': 'pho (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086a5e6f-5d1c-40ac-b519-38f347422619', 'status': 'released'} dm3 4 1187660 1207064 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 508178243 Kevin White, UChicago 9d10d6e0476aeae9f19f2decbb014f03 https://www.encodeproject.org/files/ENCFF441WKM/@@download/ENCFF441WKM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/eed0a0af-229e-4902-8007-391c29f30aa3/ENCFF441WKM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF874ULN bam bam alignments dm3 ENCSR820IUK Control ChIP-seq /fly-donors/ENCDO250AHM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43819/'], '@type': ['Target', 'Item'], 'name': 'pho-dmelanogaster', 'label': 'pho', '@id': '/targets/pho-dmelanogaster/', 'title': 'pho (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086a5e6f-5d1c-40ac-b519-38f347422619', 'status': 'released'} dm3 4 1187660 1207064 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF441WKM/ 734690026 Kevin White, UChicago 1391ba36b7d4123b960beb1bd8861d49 https://www.encodeproject.org/files/ENCFF874ULN/@@download/ENCFF874ULN.bam released s3://encode-public/2015/08/03/b61416d3-29e2-480d-8b58-091a6cc042df/ENCFF874ULN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF555KZA bigWig bigWig signal of unique reads dm3 ENCSR820IUK Control ChIP-seq /fly-donors/ENCDO250AHM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43819/'], '@type': ['Target', 'Item'], 'name': 'pho-dmelanogaster', 'label': 'pho', '@id': '/targets/pho-dmelanogaster/', 'title': 'pho (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086a5e6f-5d1c-40ac-b519-38f347422619', 'status': 'released'} dm3 4 1187660 1207064 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF874ULN/ 15342082 Kevin White, UChicago 5882b5bdf075982e806d6eed0421a4b7 https://www.encodeproject.org/files/ENCFF555KZA/@@download/ENCFF555KZA.bigWig released s3://encode-public/2015/10/06/9461ce53-b8a7-49fb-ab5d-8a3716455ece/ENCFF555KZA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF794PAH bigWig bigWig read-depth normalized signal dm3 ENCSR820IUK Control ChIP-seq /fly-donors/ENCDO250AHM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43819/'], '@type': ['Target', 'Item'], 'name': 'pho-dmelanogaster', 'label': 'pho', '@id': '/targets/pho-dmelanogaster/', 'title': 'pho (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086a5e6f-5d1c-40ac-b519-38f347422619', 'status': 'released'} dm3 4 1187660 1207064 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF874ULN/ 15380024 Kevin White, UChicago 8d81fae2e6689f9882c24beb0b71d371 https://www.encodeproject.org/files/ENCFF794PAH/@@download/ENCFF794PAH.bigWig released s3://encode-public/2015/10/06/26378396-4364-489d-939c-e49764c3787d/ENCFF794PAH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF227ZMA bam bam alignments dm6 ENCSR820IUK Control ChIP-seq /fly-donors/ENCDO250AHM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43819/'], '@type': ['Target', 'Item'], 'name': 'pho-dmelanogaster', 'label': 'pho', '@id': '/targets/pho-dmelanogaster/', 'title': 'pho (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086a5e6f-5d1c-40ac-b519-38f347422619', 'status': 'released'} dm3 4 1187660 1207064 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF441WKM/ 732846243 Kevin White, UChicago 684f992ace99272ce07aee9d2826ebe7 https://www.encodeproject.org/files/ENCFF227ZMA/@@download/ENCFF227ZMA.bam released s3://encode-public/2016/04/22/651b6068-df89-44ba-ba7d-aca4242186a4/ENCFF227ZMA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF838JNN bigWig bigWig read-depth normalized signal dm6 ENCSR820IUK Control ChIP-seq /fly-donors/ENCDO250AHM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43819/'], '@type': ['Target', 'Item'], 'name': 'pho-dmelanogaster', 'label': 'pho', '@id': '/targets/pho-dmelanogaster/', 'title': 'pho (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086a5e6f-5d1c-40ac-b519-38f347422619', 'status': 'released'} dm3 4 1187660 1207064 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF227ZMA/ 17501936 Kevin White, UChicago 6776dcedceaa1217390b7502f408dd19 https://www.encodeproject.org/files/ENCFF838JNN/@@download/ENCFF838JNN.bigWig released s3://encode-public/2016/06/21/b3aff662-0f14-4546-b258-9060c78701fe/ENCFF838JNN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF764EZU bigWig bigWig signal of unique reads dm6 ENCSR820IUK Control ChIP-seq /fly-donors/ENCDO250AHM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43819/'], '@type': ['Target', 'Item'], 'name': 'pho-dmelanogaster', 'label': 'pho', '@id': '/targets/pho-dmelanogaster/', 'title': 'pho (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086a5e6f-5d1c-40ac-b519-38f347422619', 'status': 'released'} dm3 4 1187660 1207064 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF227ZMA/ 17456066 Kevin White, UChicago da40312158b75f02b1aad4572e0a4bea https://www.encodeproject.org/files/ENCFF764EZU/@@download/ENCFF764EZU.bigWig released s3://encode-public/2016/06/21/7f8b9d71-3cea-43a7-88fb-5e595b03d9ce/ENCFF764EZU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF416SOB fastq fastq reads ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 111995756 Michael Snyder, Stanford 07b07cdffdf1950cb1c5bb4e7c63c330 https://www.encodeproject.org/files/ENCFF416SOB/@@download/ENCFF416SOB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f3855c2a-3c13-4ccb-a799-8fb2efdb9ec9/ENCFF416SOB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF704EYU fastq fastq reads ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 119906119 Michael Snyder, Stanford 688dc20af5bf7cc6c7e6233bc8c319b2 https://www.encodeproject.org/files/ENCFF704EYU/@@download/ENCFF704EYU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/da88884f-83a8-45a6-9b59-dd4d49575de0/ENCFF704EYU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF770KME bam bam alignments ce10 ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF416SOB/, /files/ENCFF704EYU/, /files/ENCFF987UMF/ 306294700 Kevin White, UChicago 4abfc3de0730e63cdeb3ac0ec5be4582 https://www.encodeproject.org/files/ENCFF770KME/@@download/ENCFF770KME.bam released s3://encode-public/2016/10/18/cf6f39bd-8693-48dc-a42e-de9f98bd0747/ENCFF770KME.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF927LZQ bam bam alignments ce11 ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF416SOB/, /files/ENCFF704EYU/, /files/ENCFF586MOL/ 306615975 Kevin White, UChicago 241305cb9c6dd99be586f33d9213ebd0 https://www.encodeproject.org/files/ENCFF927LZQ/@@download/ENCFF927LZQ.bam released s3://encode-public/2016/10/19/17209e54-aa4e-4f09-a6eb-0d90538c53c3/ENCFF927LZQ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF591DKN bigWig bigWig signal of unique reads ce10 ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF770KME/ 10061374 Kevin White, UChicago e2c54f56026b7d49aceea6e81811bda2 https://www.encodeproject.org/files/ENCFF591DKN/@@download/ENCFF591DKN.bigWig released s3://encode-public/2016/10/20/d7452f00-7f60-4367-8a34-c60dfad6648b/ENCFF591DKN.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF425VHZ bigWig bigWig read-depth normalized signal ce10 ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF770KME/ 9999682 Kevin White, UChicago 5d6a0364403fe5981a3e3931a2dafb0f https://www.encodeproject.org/files/ENCFF425VHZ/@@download/ENCFF425VHZ.bigWig released s3://encode-public/2016/10/20/5cae35d2-aec1-4af4-9250-ddcea9b5e968/ENCFF425VHZ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF487TRY bigWig bigWig signal of unique reads ce11 ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF927LZQ/ 10058355 Kevin White, UChicago 23ac2deffd27bcc51afb01b96e3cc1d6 https://www.encodeproject.org/files/ENCFF487TRY/@@download/ENCFF487TRY.bigWig released s3://encode-public/2016/10/21/1b1a5725-0443-4f79-bb30-2fedef6f1234/ENCFF487TRY.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF919IXV bigWig bigWig read-depth normalized signal ce11 ENCSR116MEY Control ChIP-seq /worm-donors/ENCDO669AYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF927LZQ/ 9998452 Kevin White, UChicago 175831e9a1137950bf7cd756728a6d23 https://www.encodeproject.org/files/ENCFF919IXV/@@download/ENCFF919IXV.bigWig released s3://encode-public/2016/10/21/b851dfa9-d419-4dda-9d23-71053b17c390/ENCFF919IXV.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF811FVR fastq fastq reads ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 152515558 Michael Snyder, Stanford 7535984f9300793c3d03a21939d1286b https://www.encodeproject.org/files/ENCFF811FVR/@@download/ENCFF811FVR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/7a94efc6-c5be-4c30-a0b1-f4b13071bd1e/ENCFF811FVR.fastq.gz ENCFF758UDM fastq fastq reads ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 136498303 Michael Snyder, Stanford d5fb28b8e10b2ba66773f76bc8dfc36f https://www.encodeproject.org/files/ENCFF758UDM/@@download/ENCFF758UDM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/5b42c8db-1716-4f6a-8931-8102955b8056/ENCFF758UDM.fastq.gz ENCFF543RDC bam bam alignments ce10 ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF811FVR/, /files/ENCFF758UDM/, /files/ENCFF987UMF/ 364113005 Kevin White, UChicago 450a69ea67c8bd483a6e997e203e21aa https://www.encodeproject.org/files/ENCFF543RDC/@@download/ENCFF543RDC.bam released s3://encode-public/2018/01/09/16b7b4e9-f6ad-4232-afcd-e3ce0d765de6/ENCFF543RDC.bam Lab custom ce10 archived ENCFF380YWK bam bam alignments ce11 ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF811FVR/, /files/ENCFF758UDM/, /files/ENCFF586MOL/ 364449201 Kevin White, UChicago 476dace0a99d69aacfd305e6759abe8c https://www.encodeproject.org/files/ENCFF380YWK/@@download/ENCFF380YWK.bam released s3://encode-public/2018/01/09/3dc5400f-3775-46d2-b48c-ddcb01430fbb/ENCFF380YWK.bam Lab custom ce11 released ENCFF974OWG bigWig bigWig read-depth normalized signal ce10 ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF543RDC/ 10072015 Kevin White, UChicago 0c30fb69d49c380fc25a39ec74a8a9f0 https://www.encodeproject.org/files/ENCFF974OWG/@@download/ENCFF974OWG.bigWig released s3://encode-public/2018/01/09/cf203e9a-2ac5-41d6-8edd-635b8afbbb29/ENCFF974OWG.bigWig Lab custom ce10 archived ENCFF878LXP bigWig bigWig signal of unique reads ce10 ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF543RDC/ 10061901 Kevin White, UChicago 3f290febe1181b372ce44ff5f2f46a6f https://www.encodeproject.org/files/ENCFF878LXP/@@download/ENCFF878LXP.bigWig released s3://encode-public/2018/01/09/0768a7b3-e6b9-41a0-99e5-ce9316863d36/ENCFF878LXP.bigWig Lab custom ce10 archived ENCFF425JNL bigWig bigWig signal of unique reads ce11 ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF380YWK/ 10058699 Kevin White, UChicago 1f4f782aafe97da26e812af0a5653ad0 https://www.encodeproject.org/files/ENCFF425JNL/@@download/ENCFF425JNL.bigWig released s3://encode-public/2018/01/09/c360aca4-dbc2-4840-83b5-6c64585cc52f/ENCFF425JNL.bigWig Lab custom ce11 released ENCFF698AFT bigWig bigWig read-depth normalized signal ce11 ENCSR142DMI Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF380YWK/ 10068269 Kevin White, UChicago 8dba97e57b28f28f09039f20a79603b1 https://www.encodeproject.org/files/ENCFF698AFT/@@download/ENCFF698AFT.bigWig released s3://encode-public/2018/01/09/1d28da0c-ca01-4545-a4b8-70f963803567/ENCFF698AFT.bigWig Lab custom ce11 released ENCFF000XFP bam bam alignments hg19 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XHJ/ 418618280 Sherman Weissman, Yale 1537b895489a4bde77fe43361bff5130 https://www.encodeproject.org/files/ENCFF000XFP/@@download/ENCFF000XFP.bam archived s3://encode-public/2010/12/02/06ed8228-d034-4bf4-b6c3-317c5455adf2/ENCFF000XFP.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000XFQ bigWig bigWig signal hg19 ENCSR000EZI Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 351658705 Sherman Weissman, Yale 85d2c87f2110a47b788e3fcd5d63b556 https://www.encodeproject.org/files/ENCFF000XFQ/@@download/ENCFF000XFQ.bigWig archived s3://encode-public/2010/12/02/31dda867-f9cc-48ac-b498-116795a45634/ENCFF000XFQ.bigWig Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000XFR bam bam alignments hg19 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XHP/ 341436166 Sherman Weissman, Yale f57193267dc88968e318401b8ad32e9c https://www.encodeproject.org/files/ENCFF000XFR/@@download/ENCFF000XFR.bam archived s3://encode-public/2010/12/02/94b0555e-0075-4a13-8934-70f9615bbb0b/ENCFF000XFR.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000XHJ fastq fastq reads ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 329774645 Sherman Weissman, Yale 3e8acd73136d1b2a286f6dc4cf397bbc https://www.encodeproject.org/files/ENCFF000XHJ/@@download/ENCFF000XHJ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/e1fcb66d-f227-4810-baf7-a4ccca9f0622/ENCFF000XHJ.fastq.gz mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF000XHP fastq fastq reads ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 337623523 Sherman Weissman, Yale 4afd848063bb992d3a5e19effa66fa32 https://www.encodeproject.org/files/ENCFF000XHP/@@download/ENCFF000XHP.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/41e42782-1c86-4d85-abc6-8b097ab01def/ENCFF000XHP.fastq.gz mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF543CJM bam bam unfiltered alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000XHJ/ 421057401 ENCODE Processing Pipeline f8b11d1f29a7b059a75f8002837eb2f0 https://www.encodeproject.org/files/ENCFF543CJM/@@download/ENCFF543CJM.bam released s3://encode-public/2016/10/26/3cceacbe-c6a6-4109-ab10-be092e4a9273/ENCFF543CJM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF610OXJ bam bam unfiltered alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000XHP/ 346728959 ENCODE Processing Pipeline 00950fc08f456240411812748724465a https://www.encodeproject.org/files/ENCFF610OXJ/@@download/ENCFF610OXJ.bam released s3://encode-public/2016/10/26/62b032e7-81a5-45ea-9734-01b79cef6602/ENCFF610OXJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF796KNY bam bam alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000XHP/ 191637883 ENCODE Processing Pipeline 73690079b7c425c1f254aef3e151dafa https://www.encodeproject.org/files/ENCFF796KNY/@@download/ENCFF796KNY.bam released s3://encode-public/2016/10/26/a2e9cc34-1398-4944-8000-a072585550e0/ENCFF796KNY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF369VWX bam bam alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000XHJ/ 278872713 ENCODE Processing Pipeline 0520c64770a3859180958cb49ffdf61c https://www.encodeproject.org/files/ENCFF369VWX/@@download/ENCFF369VWX.bam released s3://encode-public/2016/10/26/695e8360-e48f-4231-8682-741418cd5aab/ENCFF369VWX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF111AUU bam bam unfiltered alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000XHJ/ 401717809 ENCODE Processing Pipeline fb0e72d7638f66f2ebfceafb97b47178 https://www.encodeproject.org/files/ENCFF111AUU/@@download/ENCFF111AUU.bam released s3://encode-public/2020/10/27/8706cfe3-b320-42bb-89c0-baa8281b6614/ENCFF111AUU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF989UAV bam bam alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000XHJ/ 284225543 ENCODE Processing Pipeline fd1ebd5cc55fc1036016143fa8d106b6 https://www.encodeproject.org/files/ENCFF989UAV/@@download/ENCFF989UAV.bam released s3://encode-public/2020/10/27/dceaf7f0-fe83-496d-a71a-35439062cdc1/ENCFF989UAV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF507QNT bam bam alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000XHP/ 196454740 ENCODE Processing Pipeline b696ad7a2e51607ae38441a194be9225 https://www.encodeproject.org/files/ENCFF507QNT/@@download/ENCFF507QNT.bam released s3://encode-public/2020/10/27/91fb0f8d-13f1-4f80-be59-ffe1cec003dc/ENCFF507QNT.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF693CUR bam bam unfiltered alignments GRCh38 ENCSR000EZI Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000XHP/ 318666882 ENCODE Processing Pipeline 34030b4d8e4775dfe8acf077c796fbea https://www.encodeproject.org/files/ENCFF693CUR/@@download/ENCFF693CUR.bam released s3://encode-public/2020/10/27/c27b760d-a1eb-49f6-8e0a-7e963666cf03/ENCFF693CUR.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read length, insufficient read depth ENCFF001MSK bam bam alignments mm9 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF001MSM/ 1028719350 Ross Hardison, PennState 1ad8e395ae74d1e6e0d2aba9d9879298 https://www.encodeproject.org/files/ENCFF001MSK/@@download/ENCFF001MSK.bam archived s3://encode-public/2011/11/05/33c72110-6067-4d1b-ace1-42e440688421/ENCFF001MSK.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MSM fastq fastq reads ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 single-ended 800717692 Ross Hardison, PennState d2a5e2371f4dbe7aa4441f811c491da8 https://www.encodeproject.org/files/ENCFF001MSM/@@download/ENCFF001MSM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2011/11/05/3536934e-4d94-4a38-8738-cd268bf09459/ENCFF001MSM.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MSN bigWig bigWig signal mm9 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 1657187666 Ross Hardison, PennState a647363fc3c7a526395f2fd078e0925f https://www.encodeproject.org/files/ENCFF001MSN/@@download/ENCFF001MSN.bigWig archived s3://encode-public/2011/11/05/381f984b-9176-4464-b8e1-8ac21afbb951/ENCFF001MSN.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MSO bigWig bigWig signal mm9 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 6045191804 Ross Hardison, PennState 41ee6e553da1b76f869a2227e5350e13 https://www.encodeproject.org/files/ENCFF001MSO/@@download/ENCFF001MSO.bigWig archived s3://encode-public/2011/11/05/02110ad1-40e2-4ad7-bd36-4e80d4486df0/ENCFF001MSO.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MSP bam bam alignments mm9 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF001MSW/ 7614913216 Ross Hardison, PennState d547ae54e89c38bbfe6e12b88ac83b29 https://www.encodeproject.org/files/ENCFF001MSP/@@download/ENCFF001MSP.bam archived s3://encode-public/2011/11/05/34e31a53-b318-4ec3-a65f-ee5b75104a63/ENCFF001MSP.bam Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MSQ bigWig bigWig signal mm9 ENCSR000DIV Control ChIP-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 6070118250 Ross Hardison, PennState bab3b99c521c19487b65a4e850ee2546 https://www.encodeproject.org/files/ENCFF001MSQ/@@download/ENCFF001MSQ.bigWig archived s3://encode-public/2011/11/05/95f0461f-c101-4923-abaa-5cb9b6893860/ENCFF001MSQ.bigWig Lab custom mm9 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001MSW fastq fastq reads ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 55 single-ended 6612112910 Ross Hardison, PennState 17b1a82c966438e13ee5b05c84b44d44 https://www.encodeproject.org/files/ENCFF001MSW/@@download/ENCFF001MSW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/5ab61621-b9f0-4500-821e-dcca05ecb8c9/ENCFF001MSW.fastq.gz low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF328CRA bam bam unfiltered alignments mm10-minimal ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF806TVZ/, /files/ENCFF001MSW/ 7960901121 J. Michael Cherry, Stanford 07840d2c2f5daff57b9a34840a2f724e https://www.encodeproject.org/files/ENCFF328CRA/@@download/ENCFF328CRA.bam archived s3://encode-public/2015/02/10/07b36568-6987-4362-affd-af5b549ff275/ENCFF328CRA.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF710PST bam bam unfiltered alignments mm10-minimal ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF001MSM/, /files/ENCFF806TVZ/ 1084034937 J. Michael Cherry, Stanford aafc89172d1c4b46706640bd68adda63 https://www.encodeproject.org/files/ENCFF710PST/@@download/ENCFF710PST.bam archived s3://encode-public/2015/02/10/99ded0ff-a00f-4943-b37b-ea543778c6d8/ENCFF710PST.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF311GKP bam bam alignments mm10-minimal ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 55 /files/ENCFF806TVZ/, /files/ENCFF001MSW/ 5889488451 J. Michael Cherry, Stanford 35dc8e52d27903e5f805bfb5a7cf7214 https://www.encodeproject.org/files/ENCFF311GKP/@@download/ENCFF311GKP.bam archived s3://encode-public/2015/05/23/0ff9c47e-76f4-46fa-b3b5-58eec28af1c0/ENCFF311GKP.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF015YQP bam bam alignments mm10-minimal ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF001MSM/, /files/ENCFF806TVZ/ 748338868 J. Michael Cherry, Stanford 2c94cedc9a79514c7176a6b08fda9fe6 https://www.encodeproject.org/files/ENCFF015YQP/@@download/ENCFF015YQP.bam archived s3://encode-public/2015/05/23/a87823bd-de5a-4916-9560-4eab1ef1fec9/ENCFF015YQP.bam ENCODE3 mm10-minimal archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF383IWZ bam bam alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MSM/ 748074240 ENCODE Processing Pipeline 2755b89175dac5164582621a3691a259 https://www.encodeproject.org/files/ENCFF383IWZ/@@download/ENCFF383IWZ.bam released s3://encode-public/2016/04/28/c8ea9b48-5c19-4b99-861e-c7dd40cdcf45/ENCFF383IWZ.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF844DQA bam bam unfiltered alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001MSM/ 1085285257 ENCODE Processing Pipeline fbce0a094fe24a9a80bc823e4ba7b8de https://www.encodeproject.org/files/ENCFF844DQA/@@download/ENCFF844DQA.bam released s3://encode-public/2016/07/06/67e77d9e-ec90-4e26-8f28-92e3ee136ed9/ENCFF844DQA.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF585VFF bam bam unfiltered alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MSW/ 6302744748 ENCODE Processing Pipeline 3974bcaaca30fedd99b467036794d6a5 https://www.encodeproject.org/files/ENCFF585VFF/@@download/ENCFF585VFF.bam released s3://encode-public/2016/11/28/e335d932-b9cb-49d5-9c8f-401900afbb32/ENCFF585VFF.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF676LVI bam bam alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001MSW/ 4458822767 ENCODE Processing Pipeline 4d8f5b0eb60ae24c7f16a629225e27bd https://www.encodeproject.org/files/ENCFF676LVI/@@download/ENCFF676LVI.bam released s3://encode-public/2016/11/28/5dbe90f4-999e-42fa-a1c8-5298b9b6f9f2/ENCFF676LVI.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF762NGH bam bam unfiltered alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF001MSW/, /files/ENCFF309GLL/ 6220519192 ENCODE Processing Pipeline d2e3f00f122ebec621ef3ac833ad5125 https://www.encodeproject.org/files/ENCFF762NGH/@@download/ENCFF762NGH.bam released s3://encode-public/2020/10/12/8ca23715-a3ce-4a19-b045-5520d85b1815/ENCFF762NGH.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF910ZBY bam bam alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 2 2_1 36 /files/ENCFF001MSW/, /files/ENCFF309GLL/ 4736771592 ENCODE Processing Pipeline 1e6c26b2eeddd198867927ffbdb4eda1 https://www.encodeproject.org/files/ENCFF910ZBY/@@download/ENCFF910ZBY.bam released s3://encode-public/2020/10/12/36fb7bd5-c8fd-4ae9-b992-4fbbeae30c4f/ENCFF910ZBY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF984VFY bam bam unfiltered alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001MSM/ 1057305614 ENCODE Processing Pipeline 77904a98d57480dbf4e94379bf136c3e https://www.encodeproject.org/files/ENCFF984VFY/@@download/ENCFF984VFY.bam released s3://encode-public/2020/10/12/9ba0d883-8e1f-48e8-ac63-3c8e465df498/ENCFF984VFY.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF564KVP bam bam alignments mm10 ENCSR000DIV Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA 2012-02-13 ENCODE see document 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001MSM/ 788242828 ENCODE Processing Pipeline 6abbfb4eba0a99e4b2fcf7bdc181f610 https://www.encodeproject.org/files/ENCFF564KVP/@@download/ENCFF564KVP.bam released s3://encode-public/2020/10/12/5b0cd7b5-d456-4851-aebd-8451c776715f/ENCFF564KVP.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths, inconsistent platforms ENCFF001ZGK fastq fastq reads ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 45 single-ended 2374845582 Ross Hardison, PennState 15b1b14c1beb5427de9d5c526180be25 SRA:SRR10049539 https://www.encodeproject.org/files/ENCFF001ZGK/@@download/ENCFF001ZGK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/02/07/e746f984-ed67-4f19-a379-6d2c864f4581/ENCFF001ZGK.fastq.gz low read length ENCFF001ZGL bigWig bigWig signal mm9 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 5622905341 Ross Hardison, PennState c97cd6a7cc809785760f8898fcfac0e7 https://www.encodeproject.org/files/ENCFF001ZGL/@@download/ENCFF001ZGL.bigWig archived s3://encode-public/2014/02/07/c739758d-cf13-46aa-9012-d477d81aedaa/ENCFF001ZGL.bigWig Lab custom mm9 archived low read length ENCFF001ZGM fastq fastq reads ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 45 single-ended 2248106356 Ross Hardison, PennState 8dc9d204f2bb9273e1992e173e2d1a81 SRA:SRR10049540 https://www.encodeproject.org/files/ENCFF001ZGM/@@download/ENCFF001ZGM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/02/07/8ed993a7-fba7-4e49-acc6-bea03c6abf4b/ENCFF001ZGM.fastq.gz low read length ENCFF001ZGN bigWig bigWig signal mm9 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 5597209627 Ross Hardison, PennState f38d7b19302663f8cbcc68501c197c13 https://www.encodeproject.org/files/ENCFF001ZGN/@@download/ENCFF001ZGN.bigWig archived s3://encode-public/2014/02/07/b258fa78-b391-472c-b16b-8b61fb44af74/ENCFF001ZGN.bigWig Lab custom mm9 archived low read length ENCFF001ZGO bam bam alignments mm9 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 45 /files/ENCFF001ZGK/ 2988920001 Ross Hardison, PennState c7604821f8d5a01cbedc6ca6b4632a6f https://www.encodeproject.org/files/ENCFF001ZGO/@@download/ENCFF001ZGO.bam archived s3://encode-public/2014/02/09/4e361534-4bb8-476e-be72-f5c0552359a6/ENCFF001ZGO.bam Lab custom mm9 archived low read length ENCFF001ZGP bam bam alignments mm9 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 45 /files/ENCFF001ZGM/ 2843679698 Ross Hardison, PennState 95e2811596345359648c0a48c4cbb37b https://www.encodeproject.org/files/ENCFF001ZGP/@@download/ENCFF001ZGP.bam archived s3://encode-public/2014/02/09/0828f271-b623-41a4-a12f-ac959eadec85/ENCFF001ZGP.bam Lab custom mm9 archived low read length ENCFF001ZGQ bam bam alignments mm9 ENCSR326ULS Control ChIP-seq EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 45 5740230731 Ross Hardison, PennState d72a1e533f2850001face5ad476a2aee https://www.encodeproject.org/files/ENCFF001ZGQ/@@download/ENCFF001ZGQ.bam archived s3://encode-public/2014/02/09/0d472b76-9972-4b9b-a9b8-7c5c4db0e43f/ENCFF001ZGQ.bam Lab custom mm9 archived low read length ENCFF001ZGR bigWig bigWig signal mm9 ENCSR326ULS Control ChIP-seq EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 6161232251 Ross Hardison, PennState 40911dfc01554387dbe41000684422fa https://www.encodeproject.org/files/ENCFF001ZGR/@@download/ENCFF001ZGR.bigWig archived s3://encode-public/2014/02/09/6fdd8589-eb76-4116-b91e-9824c0461ef1/ENCFF001ZGR.bigWig Lab custom mm9 archived low read length ENCFF065YVW bam bam unfiltered alignments mm10-minimal ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 45 /files/ENCFF001ZGK/, /files/ENCFF806TVZ/ 3180249189 J. Michael Cherry, Stanford d67a80d044c110147aaf1eb9fdd52539 https://www.encodeproject.org/files/ENCFF065YVW/@@download/ENCFF065YVW.bam archived s3://encode-public/2015/02/04/4855b4fa-56c3-4183-ad78-3eee3b4a7f16/ENCFF065YVW.bam ENCODE3 mm10-minimal archived low read length ENCFF148NDK bam bam unfiltered alignments mm10-minimal ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 45 /files/ENCFF001ZGM/, /files/ENCFF806TVZ/ 3025729204 J. Michael Cherry, Stanford 903d72c337b9ec8964e0eeb1da650759 https://www.encodeproject.org/files/ENCFF148NDK/@@download/ENCFF148NDK.bam archived s3://encode-public/2015/02/04/7a40a39e-4ee6-4778-acc8-54b7ff535040/ENCFF148NDK.bam ENCODE3 mm10-minimal archived low read length ENCFF111OFQ bam bam alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 45 /files/ENCFF018NEO/, /files/ENCFF001ZGM/ 2189748683 ENCODE Processing Pipeline 02195c52fd314490fc5dfe1831de1146 https://www.encodeproject.org/files/ENCFF111OFQ/@@download/ENCFF111OFQ.bam released s3://encode-public/2016/04/28/ce181df3-2030-4a41-9198-bf9b510e7721/ENCFF111OFQ.bam ENCODE3 mm10 archived low read length ENCFF666VRA bam bam alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 45 /files/ENCFF001ZGK/, /files/ENCFF018NEO/ 2250226951 ENCODE Processing Pipeline 8344abf6d2e8958c1d12a119c6cab477 https://www.encodeproject.org/files/ENCFF666VRA/@@download/ENCFF666VRA.bam released s3://encode-public/2016/04/28/22a59f20-0b80-4618-bfb2-4a68eb992d42/ENCFF666VRA.bam ENCODE3 mm10 archived low read length ENCFF452JQI bam bam unfiltered alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 45 /files/ENCFF001ZGK/, /files/ENCFF018NEO/ 3183595126 ENCODE Processing Pipeline 8a1103711fdb5cf3fd8a60565c78b652 https://www.encodeproject.org/files/ENCFF452JQI/@@download/ENCFF452JQI.bam released s3://encode-public/2016/07/06/e656b84c-4553-4480-a3a4-a4fdb6a4b7ae/ENCFF452JQI.bam ENCODE3 mm10 archived low read length ENCFF903RYX bam bam unfiltered alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 45 /files/ENCFF018NEO/, /files/ENCFF001ZGM/ 3028849520 ENCODE Processing Pipeline b07b52ab4082934ea4f33888a688484a https://www.encodeproject.org/files/ENCFF903RYX/@@download/ENCFF903RYX.bam released s3://encode-public/2016/07/06/b71b931f-3fb3-4b66-99c6-2a775bb4bd3d/ENCFF903RYX.bam ENCODE3 mm10 archived low read length ENCFF387BBA bam bam unfiltered alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 45 /files/ENCFF001ZGK/, /files/ENCFF309GLL/ 3130604057 ENCODE Processing Pipeline 05de76c21dbade2c3cb8b6bbd407e997 https://www.encodeproject.org/files/ENCFF387BBA/@@download/ENCFF387BBA.bam released s3://encode-public/2020/10/12/c8b73933-0756-4515-945c-c543e51b26e6/ENCFF387BBA.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF984AYM bam bam alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 1 1_1 45 /files/ENCFF001ZGK/, /files/ENCFF309GLL/ 2261788090 ENCODE Processing Pipeline 6e18e8bbc4b0e68980296a73eb0c0cb7 https://www.encodeproject.org/files/ENCFF984AYM/@@download/ENCFF984AYM.bam released s3://encode-public/2020/10/12/b7c94470-edf5-47a7-b3d7-2434e8adf119/ENCFF984AYM.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF145SCW bam bam unfiltered alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 45 /files/ENCFF309GLL/, /files/ENCFF001ZGM/ 2977339906 ENCODE Processing Pipeline ebfaf956eb8398428a0074a7d783dc18 https://www.encodeproject.org/files/ENCFF145SCW/@@download/ENCFF145SCW.bam released s3://encode-public/2020/10/12/b214a910-b8f5-4c7d-8297-3a4fde47a0be/ENCFF145SCW.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF826KVZ bam bam alignments mm10 ENCSR326ULS Control ChIP-seq /mouse-donors/ENCDO015AAA/ EFO:0007751 E14TG2a.4 cell line Mus musculus DNA 2014-02-07 ENCODE see document 2 2_1 45 /files/ENCFF309GLL/, /files/ENCFF001ZGM/ 2203033462 ENCODE Processing Pipeline c81b22b2ea7a0e1066090e261aecb2c0 https://www.encodeproject.org/files/ENCFF826KVZ/@@download/ENCFF826KVZ.bam released s3://encode-public/2020/10/12/8e998665-1099-4ad6-86ca-115afb508ae3/ENCFF826KVZ.bam ENCODE4 v1.5.1 mm10 released low read length ENCFF158GHI fastq fastq reads ENCSR411ODP Control ChIP-seq /worm-donors/ENCDO667PEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178477/'], '@type': ['Target', 'Item'], 'name': 'Y116A8C.19-celegans', 'label': 'Y116A8C.19', '@id': '/targets/Y116A8C.19-celegans/', 'title': 'Y116A8C.19 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'f50696bc-ffd6-4f07-b7ea-69af4a344917', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 311509273 Kevin White, UChicago a95b716e2b1c37691b76ca6ac7def5ce https://www.encodeproject.org/files/ENCFF158GHI/@@download/ENCFF158GHI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/aefcd24d-1305-4e18-86f0-ac146cff42a2/ENCFF158GHI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF655FXP bam bam alignments ce10 ENCSR411ODP Control ChIP-seq /worm-donors/ENCDO667PEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178477/'], '@type': ['Target', 'Item'], 'name': 'Y116A8C.19-celegans', 'label': 'Y116A8C.19', '@id': '/targets/Y116A8C.19-celegans/', 'title': 'Y116A8C.19 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'f50696bc-ffd6-4f07-b7ea-69af4a344917', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF158GHI/ 442230946 Kevin White, UChicago 959f98fd789a93333957f222f12b3ffd https://www.encodeproject.org/files/ENCFF655FXP/@@download/ENCFF655FXP.bam released s3://encode-public/2015/08/07/3e52fcba-f601-4be2-bdeb-37e3b5cb647b/ENCFF655FXP.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF765JIB bigWig bigWig signal of unique reads ce10 ENCSR411ODP Control ChIP-seq /worm-donors/ENCDO667PEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178477/'], '@type': ['Target', 'Item'], 'name': 'Y116A8C.19-celegans', 'label': 'Y116A8C.19', '@id': '/targets/Y116A8C.19-celegans/', 'title': 'Y116A8C.19 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'f50696bc-ffd6-4f07-b7ea-69af4a344917', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF655FXP/ 10029541 Kevin White, UChicago b0496938989da85f657e53eb3b9935ee https://www.encodeproject.org/files/ENCFF765JIB/@@download/ENCFF765JIB.bigWig released s3://encode-public/2015/10/02/b88dff6c-d890-4097-84dc-428a40dadd16/ENCFF765JIB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF122CMD bigWig bigWig read-depth normalized signal ce10 ENCSR411ODP Control ChIP-seq /worm-donors/ENCDO667PEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178477/'], '@type': ['Target', 'Item'], 'name': 'Y116A8C.19-celegans', 'label': 'Y116A8C.19', '@id': '/targets/Y116A8C.19-celegans/', 'title': 'Y116A8C.19 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'f50696bc-ffd6-4f07-b7ea-69af4a344917', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF655FXP/ 9950798 Kevin White, UChicago 488ce732179f5f0cb8f2d3333d283af7 https://www.encodeproject.org/files/ENCFF122CMD/@@download/ENCFF122CMD.bigWig released s3://encode-public/2015/10/02/f1f3bcb1-3bf3-4c7b-96df-2e67f542ace1/ENCFF122CMD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF089EWU bam bam alignments ce11 ENCSR411ODP Control ChIP-seq /worm-donors/ENCDO667PEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178477/'], '@type': ['Target', 'Item'], 'name': 'Y116A8C.19-celegans', 'label': 'Y116A8C.19', '@id': '/targets/Y116A8C.19-celegans/', 'title': 'Y116A8C.19 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'f50696bc-ffd6-4f07-b7ea-69af4a344917', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF158GHI/ 442616384 Kevin White, UChicago d221df4ec5ef63b8c201c5a7ed189fc4 https://www.encodeproject.org/files/ENCFF089EWU/@@download/ENCFF089EWU.bam released s3://encode-public/2016/01/20/071a9f04-cb86-436c-920d-43cf4dd834eb/ENCFF089EWU.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF338KKY bigWig bigWig signal of unique reads ce11 ENCSR411ODP Control ChIP-seq /worm-donors/ENCDO667PEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178477/'], '@type': ['Target', 'Item'], 'name': 'Y116A8C.19-celegans', 'label': 'Y116A8C.19', '@id': '/targets/Y116A8C.19-celegans/', 'title': 'Y116A8C.19 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'f50696bc-ffd6-4f07-b7ea-69af4a344917', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF089EWU/ 10024914 Kevin White, UChicago c75defbb1c68a40e4f4e94699003463b https://www.encodeproject.org/files/ENCFF338KKY/@@download/ENCFF338KKY.bigWig released s3://encode-public/2016/02/03/1ae7913f-b2c0-4058-b6d9-4f277ded6fd4/ENCFF338KKY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF542YUR bigWig bigWig read-depth normalized signal ce11 ENCSR411ODP Control ChIP-seq /worm-donors/ENCDO667PEX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178477/'], '@type': ['Target', 'Item'], 'name': 'Y116A8C.19-celegans', 'label': 'Y116A8C.19', '@id': '/targets/Y116A8C.19-celegans/', 'title': 'Y116A8C.19 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': 'f50696bc-ffd6-4f07-b7ea-69af4a344917', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF089EWU/ 9953498 Kevin White, UChicago 1aa8a29201c1b1097105da3851ce57e9 https://www.encodeproject.org/files/ENCFF542YUR/@@download/ENCFF542YUR.bigWig released s3://encode-public/2016/02/03/037f1197-6b56-4af6-a71d-fbb9eb8804f8/ENCFF542YUR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF602WUU fastq fastq reads ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 89845957 Michael Snyder, Stanford aad842a77528c4a1ad7bba181f715d0b https://www.encodeproject.org/files/ENCFF602WUU/@@download/ENCFF602WUU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2b2e6c83-36fb-4d74-a116-5e8019459900/ENCFF602WUU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF822HUJ fastq fastq reads ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 106034781 Michael Snyder, Stanford 8c77154966ac0226b42d8572659caf86 https://www.encodeproject.org/files/ENCFF822HUJ/@@download/ENCFF822HUJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a38063ed-e1c7-439b-a855-1afc483daa39/ENCFF822HUJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF502HDY bam bam alignments ce10 ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF602WUU/, /files/ENCFF822HUJ/, /files/ENCFF987UMF/ 259040275 Kevin White, UChicago 8001df43a09526c6704c87efcf806c69 https://www.encodeproject.org/files/ENCFF502HDY/@@download/ENCFF502HDY.bam released s3://encode-public/2016/10/18/d3e2e59d-68a1-45bf-bd92-9eb51c52ea85/ENCFF502HDY.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF218CBO bam bam alignments ce11 ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF602WUU/, /files/ENCFF822HUJ/, /files/ENCFF586MOL/ 259341910 Kevin White, UChicago 4947e9b297fe67ea152a5a4ca53cc5a6 https://www.encodeproject.org/files/ENCFF218CBO/@@download/ENCFF218CBO.bam released s3://encode-public/2016/10/19/30af73e0-f5e9-4e51-a8d0-4da555d3676b/ENCFF218CBO.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF198KOG bigWig bigWig read-depth normalized signal ce10 ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF502HDY/ 10036620 Kevin White, UChicago 6c94eb4548a787697e1e005a6bc21176 https://www.encodeproject.org/files/ENCFF198KOG/@@download/ENCFF198KOG.bigWig released s3://encode-public/2016/10/20/8cb57295-a21b-4be5-a65e-237d68bf453b/ENCFF198KOG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF470MRT bigWig bigWig signal of unique reads ce10 ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF502HDY/ 10053900 Kevin White, UChicago e87b63572eca8982371456f60daa3b2e https://www.encodeproject.org/files/ENCFF470MRT/@@download/ENCFF470MRT.bigWig released s3://encode-public/2016/10/20/cb89958c-3951-49f5-ad49-3982f0c928a8/ENCFF470MRT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF036MAN bigWig bigWig read-depth normalized signal ce11 ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF218CBO/ 10034803 Kevin White, UChicago 40f7d30ffa8beb48cd2db8fdb1e45a70 https://www.encodeproject.org/files/ENCFF036MAN/@@download/ENCFF036MAN.bigWig released s3://encode-public/2016/10/21/c1dd4111-7022-4d83-90a8-dd0b2328d73c/ENCFF036MAN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF979SBJ bigWig bigWig signal of unique reads ce11 ENCSR604IAP Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF218CBO/ 10051036 Kevin White, UChicago 5a7e99fad8c28f20896f2efd688742d1 https://www.encodeproject.org/files/ENCFF979SBJ/@@download/ENCFF979SBJ.bigWig released s3://encode-public/2016/10/21/7568d237-5345-412d-9cf8-46d822dd2f03/ENCFF979SBJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF001HOO bam bam alignments hg19 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HOY/ 870930506 John Stamatoyannopoulos, UW 05f3eba6548b38fa8ef4d5b2f7037e62 https://www.encodeproject.org/files/ENCFF001HOO/@@download/ENCFF001HOO.bam archived s3://encode-public/2011/06/25/ffe5ceb3-ea47-41d2-b519-9a44b8d763d4/ENCFF001HOO.bam Lab custom hg19 archived low read depth, low read length ENCFF001HOP bigWig bigWig raw signal hg19 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HOO/ 184931177 John Stamatoyannopoulos, UW 4010d09b56e681c1287f2fc0bed43389 https://www.encodeproject.org/files/ENCFF001HOP/@@download/ENCFF001HOP.bigWig archived s3://encode-public/2011/06/25/ea5e0923-2a9c-4677-b508-f23b642457ba/ENCFF001HOP.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HOY fastq fastq reads ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 913476223 John Stamatoyannopoulos, UW 320b09fdbad19cd290fe649622a1762b https://www.encodeproject.org/files/ENCFF001HOY/@@download/ENCFF001HOY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/915339e8-fdfb-43e7-a76a-1107c144df8e/ENCFF001HOY.fastq.gz low read depth, low read length ENCFF111JEG bam bam unfiltered alignments GRCh38 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HOY/ 1115880320 ENCODE Processing Pipeline a051bba8ad9d416a1bc8f76f53a99383 https://www.encodeproject.org/files/ENCFF111JEG/@@download/ENCFF111JEG.bam released s3://encode-public/2016/08/09/f5ba5b9e-70d3-4645-99ed-50378d257201/ENCFF111JEG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF355KUJ bam bam alignments GRCh38 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HOY/ 806190386 ENCODE Processing Pipeline bc9d28cb9057b54b1e1900f464aa926c https://www.encodeproject.org/files/ENCFF355KUJ/@@download/ENCFF355KUJ.bam released s3://encode-public/2016/08/09/fb973074-398f-4796-8626-7196b59f3736/ENCFF355KUJ.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF602PBZ bam bam unfiltered alignments hg19 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HOY/ 1109545080 ENCODE Processing Pipeline 8779fbb429cadf361b1949d069008d27 https://www.encodeproject.org/files/ENCFF602PBZ/@@download/ENCFF602PBZ.bam released s3://encode-public/2016/11/13/e3bd14f5-f2a0-4c8e-b0a5-a9787cd700bf/ENCFF602PBZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF198DHL bam bam alignments hg19 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HOY/ 806411148 ENCODE Processing Pipeline 342f78f3605076257531871fcb1b3707 https://www.encodeproject.org/files/ENCFF198DHL/@@download/ENCFF198DHL.bam released s3://encode-public/2016/11/13/3e7bfb40-f969-4d90-91cc-0f9205fbdeea/ENCFF198DHL.bam ENCODE3 hg19 archived low read depth, low read length ENCFF671SYB bam bam unfiltered alignments GRCh38 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HOY/, /files/ENCFF110MCL/ 1088004044 ENCODE Processing Pipeline 7bca50c3b7439c2fc1290248c37d5bda https://www.encodeproject.org/files/ENCFF671SYB/@@download/ENCFF671SYB.bam released s3://encode-public/2020/09/03/618ecb20-1ddc-402e-83f5-6bd71b3f0dca/ENCFF671SYB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF937RAM bam bam alignments GRCh38 ENCSR000DUL Control ChIP-seq /human-donors/ENCDO232AAA/ EFO:0005710 HFF-Myc cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HOY/, /files/ENCFF110MCL/ 879392979 ENCODE Processing Pipeline dc3a11fb8e656fb7b93a5626e3961b85 https://www.encodeproject.org/files/ENCFF937RAM/@@download/ENCFF937RAM.bam released s3://encode-public/2020/09/03/1cad203b-6c2b-43d3-89a3-e15ede8d2e75/ENCFF937RAM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001HRJ bam bam alignments hg19 ENCSR000DVD Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HRU/ 701319783 John Stamatoyannopoulos, UW bccf9b943b8d4b3f944873f1b231974d https://www.encodeproject.org/files/ENCFF001HRJ/@@download/ENCFF001HRJ.bam archived s3://encode-public/2011/06/25/8f264e0a-a48a-4952-a6b5-9d164c61efc3/ENCFF001HRJ.bam Lab custom hg19 archived low read depth, low read length ENCFF001HRK bigWig bigWig raw signal hg19 ENCSR000DVD Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HRJ/ 166713037 John Stamatoyannopoulos, UW 64e9e2d4d3a4d9b56294db39ae26b995 https://www.encodeproject.org/files/ENCFF001HRK/@@download/ENCFF001HRK.bigWig archived s3://encode-public/2011/06/25/7268fd8a-bc06-4d0e-8241-a713d61f1f4c/ENCFF001HRK.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HRU fastq fastq reads ENCSR000DVD Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 740025817 John Stamatoyannopoulos, UW d817c18853440eafabc8b3be3cc026f8 https://www.encodeproject.org/files/ENCFF001HRU/@@download/ENCFF001HRU.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/794fcda6-993d-41c1-929c-d34862255aa9/ENCFF001HRU.fastq.gz low read depth, low read length ENCFF047NAO bam bam unfiltered alignments GRCh38 ENCSR000DVD Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial 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Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HRU/ 910331396 ENCODE Processing Pipeline f3283f75baf56fe04b0eb28f84fe25bb https://www.encodeproject.org/files/ENCFF735TUW/@@download/ENCFF735TUW.bam released s3://encode-public/2016/11/13/c3a0fd87-9724-42e0-b77b-a692cbf20dd5/ENCFF735TUW.bam ENCODE3 hg19 archived low read depth, low read length ENCFF213ZXO bam bam alignments hg19 ENCSR000DVD Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HRU/ 645479046 ENCODE Processing Pipeline 6a5999ee200cec95e86a9faeb5520130 https://www.encodeproject.org/files/ENCFF213ZXO/@@download/ENCFF213ZXO.bam released s3://encode-public/2016/11/13/865c956f-b34f-4b9c-b43d-6363c537fb92/ENCFF213ZXO.bam ENCODE3 hg19 archived low read depth, low read length ENCFF202JYU bam bam unfiltered alignments GRCh38 ENCSR000DVD Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HRU/ 895212746 ENCODE Processing Pipeline f9ba3d461756aebd4e1d64c7f9c8e63d https://www.encodeproject.org/files/ENCFF202JYU/@@download/ENCFF202JYU.bam released s3://encode-public/2020/09/03/0f617e32-c954-4a3a-a35d-01188ff1a41c/ENCFF202JYU.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF569ZEG bam bam alignments GRCh38 ENCSR000DVD Control ChIP-seq /human-donors/ENCDO810BYC/ CL:0002518 kidney epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HRU/ 706808244 ENCODE Processing Pipeline 6b2a61fca5e1aabc773285b1a3f0c565 https://www.encodeproject.org/files/ENCFF569ZEG/@@download/ENCFF569ZEG.bam released s3://encode-public/2020/09/03/136042a3-c5ea-4ff4-9da8-74941158b5a5/ENCFF569ZEG.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF166YEU fastq fastq reads ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 139470900 Michael Snyder, Stanford b29adb81b995abd8d013fe9e514e9f0e https://www.encodeproject.org/files/ENCFF166YEU/@@download/ENCFF166YEU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/639d4a4e-e1f5-4189-9e46-58b1552b2100/ENCFF166YEU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF498MIE fastq fastq reads ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 156851083 Michael Snyder, Stanford cbf9d1bc1944913df802404b9c0c97a5 https://www.encodeproject.org/files/ENCFF498MIE/@@download/ENCFF498MIE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/64b55b23-aa02-4657-9532-056bcf02fca6/ENCFF498MIE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF144BJK bam bam alignments ce10 ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF498MIE/, /files/ENCFF166YEU/, /files/ENCFF987UMF/ 369537685 Kevin White, UChicago cbec2dbc4b4f636d5f5d7c755344bc31 https://www.encodeproject.org/files/ENCFF144BJK/@@download/ENCFF144BJK.bam released s3://encode-public/2016/10/26/78118eec-d0a5-4595-9737-ba872fc5c6e7/ENCFF144BJK.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF059DMF bam bam alignments ce11 ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF498MIE/, /files/ENCFF166YEU/, /files/ENCFF586MOL/ 369874185 Kevin White, UChicago 9ae731178857fd23eb66f438d6da8734 https://www.encodeproject.org/files/ENCFF059DMF/@@download/ENCFF059DMF.bam released s3://encode-public/2016/10/26/d02e0e31-7562-45f0-9af3-d84d4ad523ee/ENCFF059DMF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF429TQC bigWig bigWig signal of unique reads ce10 ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF144BJK/ 10071650 Kevin White, UChicago bd31ffdba61e5e98393c55819d20d8b2 https://www.encodeproject.org/files/ENCFF429TQC/@@download/ENCFF429TQC.bigWig released s3://encode-public/2016/10/26/fdff4272-e0e0-4d32-a016-13278aa61887/ENCFF429TQC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF702TXX bigWig bigWig read-depth normalized signal ce10 ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF144BJK/ 10081046 Kevin White, UChicago 45432938f6fa0ceefe96213abe217b05 https://www.encodeproject.org/files/ENCFF702TXX/@@download/ENCFF702TXX.bigWig released s3://encode-public/2016/10/26/fc85b6aa-75a7-4e0b-8f4e-5629fcac643e/ENCFF702TXX.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF123GRA bigWig bigWig signal of unique reads ce11 ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174721/'], '@type': ['Target', 'Item'], 'name': 'unc-130-celegans', 'label': 'unc-130', '@id': '/targets/unc-130-celegans/', 'title': 'unc-130 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '01062bf1-64a0-4b69-a6c3-03cd3bb8ff92', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF059DMF/ 10068405 Kevin White, UChicago 6abe57b61f85b8b888f4af39a53db281 https://www.encodeproject.org/files/ENCFF123GRA/@@download/ENCFF123GRA.bigWig released s3://encode-public/2016/10/26/fef6b14a-7323-4a57-a7e7-5d7e8a269244/ENCFF123GRA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF549SNK bigWig bigWig read-depth normalized signal ce11 ENCSR036AJI Control ChIP-seq /worm-donors/ENCDO503XTK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 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https://www.encodeproject.org/files/ENCFF000WOG/@@download/ENCFF000WOG.bam archived s3://encode-public/2012/07/01/7c5b180e-35e6-4215-b07e-fcfcf54b919c/ENCFF000WOG.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WOH bigWig bigWig signal hg19 ENCSR000EBH Control ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 351493937 Michael Snyder, Stanford 0cf340e80f430c04dc10d16ce9daa893 https://www.encodeproject.org/files/ENCFF000WOH/@@download/ENCFF000WOH.bigWig archived s3://encode-public/2012/07/01/ab752553-2a9f-4573-bb6f-358e7ba4b27d/ENCFF000WOH.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WOI bam bam alignments hg19 ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WOO/ 456256190 Michael Snyder, Stanford 7a6d464b06f98b4be7e6981f2cefe78b https://www.encodeproject.org/files/ENCFF000WOI/@@download/ENCFF000WOI.bam archived s3://encode-public/2012/07/01/633873c9-7717-4bc0-af60-c51cd15811cd/ENCFF000WOI.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WON fastq fastq reads ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 201627067 Michael Snyder, Stanford 97229c01f7392093fa36d6d7349a4ab1 https://www.encodeproject.org/files/ENCFF000WON/@@download/ENCFF000WON.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/b7a611ad-e261-4b30-9e2f-b0e39cea6348/ENCFF000WON.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF000WOO fastq fastq reads ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 352621043 Michael Snyder, Stanford 892dc91f24f93cf540bf82d0829043a1 https://www.encodeproject.org/files/ENCFF000WOO/@@download/ENCFF000WOO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/fd021b2f-0570-438d-aaed-dcf4b633361c/ENCFF000WOO.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF481XFA bam bam unfiltered alignments GRCh38 ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WOO/ 458749249 ENCODE Processing Pipeline c2d978949163d7d2d64027ef8aaaa645 https://www.encodeproject.org/files/ENCFF481XFA/@@download/ENCFF481XFA.bam released s3://encode-public/2016/10/26/648f8334-4fc0-418e-8534-d4db8dbcee5f/ENCFF481XFA.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF760JDY bam bam unfiltered alignments GRCh38 ENCSR000EBH Control 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length, insufficient read depth extremely low read depth ENCFF845RSV bam bam alignments GRCh38 ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WON/ 159581689 ENCODE Processing Pipeline 4d997ed50a2de9d8f7fd5b7e78c40892 https://www.encodeproject.org/files/ENCFF845RSV/@@download/ENCFF845RSV.bam released s3://encode-public/2016/10/26/d9c26b5a-b441-40eb-9950-7218c3249b94/ENCFF845RSV.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF399BJT bam bam alignments GRCh38 ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WON/ 166976658 ENCODE Processing Pipeline 313887637dc0ec12b72e4784d58d77c9 https://www.encodeproject.org/files/ENCFF399BJT/@@download/ENCFF399BJT.bam released s3://encode-public/2020/10/27/c95a3841-b554-43a2-82d8-9dc3a0237c52/ENCFF399BJT.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF044AXC bam bam unfiltered alignments GRCh38 ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WON/ 249925745 ENCODE Processing Pipeline 6c907e90a0b0a9621324190a7612e64e https://www.encodeproject.org/files/ENCFF044AXC/@@download/ENCFF044AXC.bam released s3://encode-public/2020/10/27/1cc6a119-9738-49d2-aea9-60617deb987b/ENCFF044AXC.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF503CRO bam bam unfiltered alignments GRCh38 ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WOO/ 434447095 ENCODE Processing Pipeline 0d2318a0dcfa5cf0701da512cc6e5674 https://www.encodeproject.org/files/ENCFF503CRO/@@download/ENCFF503CRO.bam released s3://encode-public/2020/10/27/305f627c-6236-4400-99a8-31c3362849df/ENCFF503CRO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF243QKU bam bam alignments GRCh38 ENCSR000EBH Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WOO/ 299086003 ENCODE Processing Pipeline 0c8f5b7bb82c4dc407d69f0f954b3664 https://www.encodeproject.org/files/ENCFF243QKU/@@download/ENCFF243QKU.bam released s3://encode-public/2020/10/27/a692580c-8f25-46bb-bf6b-20ef9c52ae51/ENCFF243QKU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF001JWL bam bam alignments mm9 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001JWW/ 1200678506 Bing Ren, UCSD 881c1a611be107587ad1d4ab305a06e6 https://www.encodeproject.org/files/ENCFF001JWL/@@download/ENCFF001JWL.bam archived s3://encode-public/2011/12/23/6f9df890-b724-4402-aaab-102e2be4874f/ENCFF001JWL.bam Lab custom mm9 archived low read depth, low read length ENCFF001JWM bam bam alignments mm9 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001JWV/ 699056556 Bing Ren, UCSD efceb831e848d3bac7dec3de668151ef https://www.encodeproject.org/files/ENCFF001JWM/@@download/ENCFF001JWM.bam archived s3://encode-public/2011/12/23/30c6e7dd-7a6a-4116-ba61-52351bc8aee5/ENCFF001JWM.bam Lab custom mm9 archived low read depth, low read length ENCFF001JWO bigWig bigWig signal mm9 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001JWL/, /files/ENCFF001JWM/ 87030211 Bing Ren, UCSD 6d8cf8a6485bf7e4a36bb823148947ea https://www.encodeproject.org/files/ENCFF001JWO/@@download/ENCFF001JWO.bigWig archived s3://encode-public/2011/12/23/f7a66b36-04b9-43f9-af20-0914de76e776/ENCFF001JWO.bigWig Lab custom mm9 archived low read depth, low read length ENCFF001JWV fastq fastq reads ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 single-ended 660144579 Bing Ren, UCSD a0601f7b651ebcbebb7c4f9c24fb3d76 https://www.encodeproject.org/files/ENCFF001JWV/@@download/ENCFF001JWV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/3fc0d056-3aef-42a9-a070-f4634c2cd781/ENCFF001JWV.fastq.gz low read depth, low read length ENCFF001JWW fastq fastq reads ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 single-ended 1128654318 Bing Ren, UCSD 26518d4d7d3775f0e2b8e99b4ccad73c https://www.encodeproject.org/files/ENCFF001JWW/@@download/ENCFF001JWW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/f188978e-5c8a-49c8-9ed2-854b56e6cb97/ENCFF001JWW.fastq.gz low read depth, low read length ENCFF037JRB bam bam unfiltered alignments mm10-minimal ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001JWW/ 1306627331 J. Michael Cherry, Stanford 4dd6760bac2a2170472aec3d3195f173 https://www.encodeproject.org/files/ENCFF037JRB/@@download/ENCFF037JRB.bam archived s3://encode-public/2015/02/04/d1cfa45a-0af4-4e18-bc98-e13608e85210/ENCFF037JRB.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF926DMF bam bam unfiltered alignments mm10-minimal ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001JWV/, /files/ENCFF806TVZ/ 781698321 J. Michael Cherry, Stanford 8d5799cbd80c9475572bcf72e1919d11 https://www.encodeproject.org/files/ENCFF926DMF/@@download/ENCFF926DMF.bam archived s3://encode-public/2015/02/04/3d2dcf0c-5262-44a7-96e0-1de1dd0bf91c/ENCFF926DMF.bam ENCODE3 mm10-minimal archived low read depth, low read length ENCFF310NCX bam bam alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001JWV/ 544494341 ENCODE Processing Pipeline d341cdb8cb7474e93b0491d7c8045cda https://www.encodeproject.org/files/ENCFF310NCX/@@download/ENCFF310NCX.bam released s3://encode-public/2016/04/28/04666c1e-a2f7-45d7-b800-f82e661c0007/ENCFF310NCX.bam ENCODE3 mm10 archived low read depth, low read length ENCFF758PYU bam bam alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001JWW/ 859035832 ENCODE Processing Pipeline 5caf102fdcc5d4b84fda85d1ed66ecf1 https://www.encodeproject.org/files/ENCFF758PYU/@@download/ENCFF758PYU.bam released s3://encode-public/2016/04/28/2c2f564b-8614-433e-af38-0e308049e319/ENCFF758PYU.bam ENCODE3 mm10 archived low read depth, low read length ENCFF505OSR bam bam unfiltered alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001JWV/ 782626555 ENCODE Processing Pipeline 02b5930361971c83c476c514e01c9cf1 https://www.encodeproject.org/files/ENCFF505OSR/@@download/ENCFF505OSR.bam released s3://encode-public/2016/07/06/beb72eb3-96a9-40f2-9071-c6f6129326af/ENCFF505OSR.bam ENCODE3 mm10 archived low read depth, low read length ENCFF576MKA bam bam unfiltered alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001JWW/ 1307668834 ENCODE Processing Pipeline cbf857cf630bbbedae979d291edb3712 https://www.encodeproject.org/files/ENCFF576MKA/@@download/ENCFF576MKA.bam released s3://encode-public/2016/07/06/1ad0b459-7028-4139-8ea4-4ba31d912983/ENCFF576MKA.bam ENCODE3 mm10 archived low read depth, low read length ENCFF586HJW bam bam alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001JWW/ 917260094 ENCODE Processing Pipeline 30ce78c9421ccf76aa07b16fd9570fbf https://www.encodeproject.org/files/ENCFF586HJW/@@download/ENCFF586HJW.bam released s3://encode-public/2020/10/12/1b701cd9-f912-4a6e-b79c-9099460ece66/ENCFF586HJW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF753BVC bam bam unfiltered alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001JWW/ 1288150233 ENCODE Processing Pipeline 9d614b0d74f593f99eeeb400862d7ab7 https://www.encodeproject.org/files/ENCFF753BVC/@@download/ENCFF753BVC.bam released s3://encode-public/2020/10/12/cbff4324-8e01-4b53-9c66-ca2bba0f28c7/ENCFF753BVC.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF385LUE bam bam unfiltered alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001JWV/ 765252862 ENCODE Processing Pipeline 60d29123f2e5f315577feb813bef1208 https://www.encodeproject.org/files/ENCFF385LUE/@@download/ENCFF385LUE.bam released s3://encode-public/2020/10/12/791b9840-e649-424f-bb3b-b5bac65ed97a/ENCFF385LUE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF667XQJ bam bam alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001JWV/ 583866373 ENCODE Processing Pipeline 92cf99a70cf50cf556d8c43190f572ff https://www.encodeproject.org/files/ENCFF667XQJ/@@download/ENCFF667XQJ.bam released s3://encode-public/2020/10/12/7e231c44-c15f-48e5-a3cd-d666f3b923cd/ENCFF667XQJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF473CYB bam bam unfiltered alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 30 /files/ENCFF001JWW/, /files/ENCFF309GLL/ 1165600620 ENCODE Processing Pipeline 85f1331ea3deffeb79de9f0301c0a516 https://www.encodeproject.org/files/ENCFF473CYB/@@download/ENCFF473CYB.bam released s3://encode-public/2020/11/18/b43c5202-bfc8-4053-9e35-0694bd073de0/ENCFF473CYB.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF440OUE bam bam unfiltered alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001JWV/, /files/ENCFF309GLL/ 691786979 ENCODE Processing Pipeline 5dc708a867a2a6784d5f9adc2741f682 https://www.encodeproject.org/files/ENCFF440OUE/@@download/ENCFF440OUE.bam released s3://encode-public/2020/11/18/bdf46a34-7fcc-4bc5-9c49-b3b9756ae7da/ENCFF440OUE.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF673TXE bam bam alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 1 1_1 30 /files/ENCFF001JWW/, /files/ENCFF309GLL/ 792906571 ENCODE Processing Pipeline 1df6fea7b679a9bdae4e0a274c1cfac6 https://www.encodeproject.org/files/ENCFF673TXE/@@download/ENCFF673TXE.bam released s3://encode-public/2020/11/18/a831598a-2a7f-493b-9f2b-5100dd466385/ENCFF673TXE.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF655TMS bam bam alignments mm10 ENCSR000CFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001348 brown adipose tissue tissue Mus musculus DNA 2012-03-28 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001JWV/, /files/ENCFF309GLL/ 502741706 ENCODE Processing Pipeline 1695814ca921e57518ec7171c4fadcd6 https://www.encodeproject.org/files/ENCFF655TMS/@@download/ENCFF655TMS.bam released s3://encode-public/2020/11/18/035e2372-0ba4-4315-8762-3eb1be96dcb0/ENCFF655TMS.bam ENCODE4 v1.6.1 mm10 released low read depth, low read length ENCFF000XFV bigWig bigWig signal hg19 ENCSR000EZH Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 351667252 Sherman Weissman, Yale bb08e942c27374a81d2199d3918ca867 https://www.encodeproject.org/files/ENCFF000XFV/@@download/ENCFF000XFV.bigWig archived s3://encode-public/2010/12/02/5623b32d-def5-42da-aecf-44630656bef3/ENCFF000XFV.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth ENCFF000XFW bam bam alignments hg19 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XID/ 410846752 Sherman Weissman, Yale 6d4f388641390bf93d129dc66d7da2ce https://www.encodeproject.org/files/ENCFF000XFW/@@download/ENCFF000XFW.bam archived s3://encode-public/2010/12/02/ea0a965a-7ee8-4fcd-b7a7-6e09f72199a0/ENCFF000XFW.bam Lab custom hg19 archived insufficient read length, insufficient read depth ENCFF000XFX bam bam alignments hg19 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIE/ 460560620 Sherman Weissman, Yale bed30887871d0d4ad73aec76008f59fe https://www.encodeproject.org/files/ENCFF000XFX/@@download/ENCFF000XFX.bam archived s3://encode-public/2010/12/02/157d02ea-c757-4bd0-b6d2-3179a152db29/ENCFF000XFX.bam Lab custom hg19 archived insufficient read length, insufficient read depth ENCFF000XID fastq fastq reads ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 305901414 Sherman Weissman, Yale 4e8cfad6228e94c4901f19ab75b5f369 https://www.encodeproject.org/files/ENCFF000XID/@@download/ENCFF000XID.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/4f6e5905-fcc6-4d1f-90cd-2b0311b0e36f/ENCFF000XID.fastq.gz insufficient read length, insufficient read depth ENCFF000XIE fastq fastq reads ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 347240261 Sherman Weissman, Yale a2c06d2da34e163c8fbd014ef2f69436 https://www.encodeproject.org/files/ENCFF000XIE/@@download/ENCFF000XIE.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/c1a26665-627d-4285-a452-0f32a20ff462/ENCFF000XIE.fastq.gz insufficient read length, insufficient read depth ENCFF920HRJ bam bam unfiltered alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIE/, /files/ENCFF643CGH/ 465222283 ENCODE Processing Pipeline 1c64408245cd5fcc8d77ec6000104d21 https://www.encodeproject.org/files/ENCFF920HRJ/@@download/ENCFF920HRJ.bam released s3://encode-public/2016/10/26/a53963fc-f348-4e4b-86b0-ac5625f533e7/ENCFF920HRJ.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth ENCFF063KUY bam bam alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIE/, /files/ENCFF643CGH/ 236572977 ENCODE Processing Pipeline 5db3904d48e4071b2aedb7133704feef https://www.encodeproject.org/files/ENCFF063KUY/@@download/ENCFF063KUY.bam released s3://encode-public/2016/10/26/bfd1d3ee-e778-40eb-81b9-857521c70ed6/ENCFF063KUY.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth ENCFF054OSH bam bam unfiltered alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XID/, /files/ENCFF643CGH/ 414326917 ENCODE Processing Pipeline 20f329e016d45185f5c97d70d77c6a22 https://www.encodeproject.org/files/ENCFF054OSH/@@download/ENCFF054OSH.bam released s3://encode-public/2016/10/26/5a1906a9-8c93-4850-a5b4-2393502e8e4b/ENCFF054OSH.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth ENCFF872NPM bam bam alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XID/, /files/ENCFF643CGH/ 222693039 ENCODE Processing Pipeline 65cb731b2f3c3554153f9228e101fed8 https://www.encodeproject.org/files/ENCFF872NPM/@@download/ENCFF872NPM.bam released s3://encode-public/2016/10/26/a33e1812-7789-45d1-89ae-3c9824206ff3/ENCFF872NPM.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth ENCFF863LCS bam bam unfiltered alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIE/, /files/ENCFF110MCL/ 433078804 ENCODE Processing Pipeline 64df081f46e3758eab5fbbcd775d47bd https://www.encodeproject.org/files/ENCFF863LCS/@@download/ENCFF863LCS.bam released s3://encode-public/2020/10/27/7fbdd511-bce7-4d54-a937-917153384802/ENCFF863LCS.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF145QBA bam bam alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XID/, /files/ENCFF110MCL/ 237925363 ENCODE Processing Pipeline e11014b908ab1bfe3bad03ff444f7e0e https://www.encodeproject.org/files/ENCFF145QBA/@@download/ENCFF145QBA.bam released s3://encode-public/2020/10/27/4ce3c1fc-6617-4a20-8824-b1c258d5c626/ENCFF145QBA.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF604VAO bam bam unfiltered alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XID/, /files/ENCFF110MCL/ 385438607 ENCODE Processing Pipeline 841cf9952af854ef24f708d7f1b13c24 https://www.encodeproject.org/files/ENCFF604VAO/@@download/ENCFF604VAO.bam released s3://encode-public/2020/10/27/dba0ecd3-f9d9-4746-b762-7eed2cb463b4/ENCFF604VAO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF522GXB bam bam alignments GRCh38 ENCSR000EZH Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIE/, /files/ENCFF110MCL/ 255086454 ENCODE Processing Pipeline 5a236abb38842529b844986cfc1fc7ca https://www.encodeproject.org/files/ENCFF522GXB/@@download/ENCFF522GXB.bam released s3://encode-public/2020/10/27/6ebf6a92-8bbc-4f8b-994a-30e972082374/ENCFF522GXB.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF963EWE fastq fastq reads ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 173751864 Michael Snyder, Stanford 0db8d9faeb2d8a47c347fa0296a86392 https://www.encodeproject.org/files/ENCFF963EWE/@@download/ENCFF963EWE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/16a66b68-dc2a-443b-be3a-dad9377a0a74/ENCFF963EWE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF517IPN fastq fastq reads ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 151164647 Michael Snyder, Stanford 3ba913294c15471b49069bca523759de https://www.encodeproject.org/files/ENCFF517IPN/@@download/ENCFF517IPN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a72f132b-150c-4705-aa4b-bcb9725aea17/ENCFF517IPN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF209PHZ bam bam alignments ce10 ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF963EWE/, /files/ENCFF517IPN/, /files/ENCFF987UMF/ 421903856 Kevin White, UChicago e50f464aa12053e28c41d992ee997363 https://www.encodeproject.org/files/ENCFF209PHZ/@@download/ENCFF209PHZ.bam released s3://encode-public/2016/10/18/4129ba46-63b2-4e33-9d99-55b8d1b49594/ENCFF209PHZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF622LGE bam bam alignments ce11 ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF963EWE/, /files/ENCFF517IPN/, /files/ENCFF586MOL/ 422330213 Kevin White, UChicago de3a11176d7c37449d364ec7527f21cf https://www.encodeproject.org/files/ENCFF622LGE/@@download/ENCFF622LGE.bam released s3://encode-public/2016/10/18/0894864c-7e7a-4979-a35c-6cd02c498ff3/ENCFF622LGE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF884ZHF bigWig bigWig read-depth normalized signal ce10 ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF209PHZ/ 10000681 Kevin White, UChicago f968c6f70129d2f78bb69943eb0a0718 https://www.encodeproject.org/files/ENCFF884ZHF/@@download/ENCFF884ZHF.bigWig released s3://encode-public/2016/10/20/58975097-b0c3-44ad-8195-18c65c2a58e2/ENCFF884ZHF.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF954TGL bigWig bigWig signal of unique reads ce10 ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF209PHZ/ 10012695 Kevin White, UChicago d3ae02221350ac193d6fbc69fe4f2dfd https://www.encodeproject.org/files/ENCFF954TGL/@@download/ENCFF954TGL.bigWig released s3://encode-public/2016/10/20/4414eb8d-4fb1-4464-864d-d589b4661bd8/ENCFF954TGL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF402VLH bigWig bigWig signal of unique reads ce11 ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF622LGE/ 10008288 Kevin White, UChicago 762d073256dea3d2abb0d6c86d306bcc https://www.encodeproject.org/files/ENCFF402VLH/@@download/ENCFF402VLH.bigWig released s3://encode-public/2016/10/20/de954019-e882-4d7b-a7ef-edd40826b66c/ENCFF402VLH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF762DHQ bigWig bigWig read-depth normalized signal ce11 ENCSR509HPC Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF622LGE/ 9993689 Kevin White, UChicago c12bd015da884b3048c7bb2395465569 https://www.encodeproject.org/files/ENCFF762DHQ/@@download/ENCFF762DHQ.bigWig released s3://encode-public/2016/10/20/39fc43cc-c9c0-4ef0-8115-e5788239db90/ENCFF762DHQ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF958KDA fastq fastq reads ENCSR748EUE Control ChIP-seq /worm-donors/ENCDO183BGD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178899/'], '@type': ['Target', 'Item'], 'name': 'C04F5.9-celegans', 'label': 'C04F5.9', '@id': '/targets/C04F5.9-celegans/', 'title': 'C04F5.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'fa584c32-42b8-4e71-89b9-126c60795a8e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 257848476 Kevin White, UChicago 638cf1876edcd3595533d82c4b561a4c https://www.encodeproject.org/files/ENCFF958KDA/@@download/ENCFF958KDA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/dda09b6a-62c3-4a5b-8493-d106e816a35b/ENCFF958KDA.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF980FVK bam bam alignments ce10 ENCSR748EUE Control ChIP-seq /worm-donors/ENCDO183BGD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178899/'], '@type': ['Target', 'Item'], 'name': 'C04F5.9-celegans', 'label': 'C04F5.9', '@id': '/targets/C04F5.9-celegans/', 'title': 'C04F5.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'fa584c32-42b8-4e71-89b9-126c60795a8e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF958KDA/ 366060570 Kevin White, UChicago c960decd07b720b5ea7736582a30d607 https://www.encodeproject.org/files/ENCFF980FVK/@@download/ENCFF980FVK.bam released s3://encode-public/2015/08/19/9dcfde05-c8fe-4f25-9706-2b775e6d98f9/ENCFF980FVK.bam Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF920PQO bigWig bigWig read-depth normalized signal ce10 ENCSR748EUE Control ChIP-seq /worm-donors/ENCDO183BGD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178899/'], '@type': ['Target', 'Item'], 'name': 'C04F5.9-celegans', 'label': 'C04F5.9', '@id': '/targets/C04F5.9-celegans/', 'title': 'C04F5.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'fa584c32-42b8-4e71-89b9-126c60795a8e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF980FVK/ 10005393 Kevin White, UChicago 7d2ef6a747c914b42edbc144ff87383f https://www.encodeproject.org/files/ENCFF920PQO/@@download/ENCFF920PQO.bigWig released s3://encode-public/2015/10/02/fd9b8eb0-f1fe-4c93-9621-3a685b9313f1/ENCFF920PQO.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF746KFF bigWig bigWig signal of unique reads ce10 ENCSR748EUE Control ChIP-seq /worm-donors/ENCDO183BGD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178899/'], '@type': ['Target', 'Item'], 'name': 'C04F5.9-celegans', 'label': 'C04F5.9', '@id': '/targets/C04F5.9-celegans/', 'title': 'C04F5.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'fa584c32-42b8-4e71-89b9-126c60795a8e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF980FVK/ 10045117 Kevin White, UChicago defd06712d144e40dfd060397947e13b https://www.encodeproject.org/files/ENCFF746KFF/@@download/ENCFF746KFF.bigWig released s3://encode-public/2015/10/02/84f633fc-0cc0-43cb-a3ff-3ca619a022a8/ENCFF746KFF.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF775VLW bam bam alignments ce11 ENCSR748EUE Control ChIP-seq /worm-donors/ENCDO183BGD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178899/'], '@type': ['Target', 'Item'], 'name': 'C04F5.9-celegans', 'label': 'C04F5.9', '@id': '/targets/C04F5.9-celegans/', 'title': 'C04F5.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'fa584c32-42b8-4e71-89b9-126c60795a8e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF958KDA/ 366384508 Kevin White, UChicago 36d7f7e049f2e7414364eb1ca0d6c994 https://www.encodeproject.org/files/ENCFF775VLW/@@download/ENCFF775VLW.bam released s3://encode-public/2016/01/16/7fe2a6ed-423c-4ce2-8616-2fc514eab0bc/ENCFF775VLW.bam Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF136KVU bigWig bigWig signal of unique reads ce11 ENCSR748EUE Control ChIP-seq /worm-donors/ENCDO183BGD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178899/'], '@type': ['Target', 'Item'], 'name': 'C04F5.9-celegans', 'label': 'C04F5.9', '@id': '/targets/C04F5.9-celegans/', 'title': 'C04F5.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'fa584c32-42b8-4e71-89b9-126c60795a8e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF775VLW/ 10045542 Kevin White, UChicago 04131ec2da889478a8feb94b780ead1c https://www.encodeproject.org/files/ENCFF136KVU/@@download/ENCFF136KVU.bigWig released s3://encode-public/2016/02/03/96ecd694-17b1-4384-a422-c246441e15bb/ENCFF136KVU.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF390QMF bigWig bigWig read-depth normalized signal ce11 ENCSR748EUE Control ChIP-seq /worm-donors/ENCDO183BGD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178899/'], '@type': ['Target', 'Item'], 'name': 'C04F5.9-celegans', 'label': 'C04F5.9', '@id': '/targets/C04F5.9-celegans/', 'title': 'C04F5.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'fa584c32-42b8-4e71-89b9-126c60795a8e', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF775VLW/ 10007144 Kevin White, UChicago fe5a37345c39e00cc6865ab4d1a8860b https://www.encodeproject.org/files/ENCFF390QMF/@@download/ENCFF390QMF.bigWig released s3://encode-public/2016/02/03/4c62b7aa-e79c-49fe-a671-0d3b37fb6558/ENCFF390QMF.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF911LZA bam bam unfiltered alignments hg19 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECO/ 1877573068 ENCODE Processing Pipeline e4140ff3bbd7dde6d3563b9b2bf7f212 https://www.encodeproject.org/files/ENCFF911LZA/@@download/ENCFF911LZA.bam released s3://encode-public/2018/02/22/6cc169f8-3ac6-414a-93aa-dc2cd37bc150/ENCFF911LZA.bam ENCODE3 hg19 archived low read length ENCFF290MBX bam bam unfiltered alignments hg19 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECN/ 1886003576 ENCODE Processing Pipeline a39a83125c20bac4b3f73ec1de644fe8 https://www.encodeproject.org/files/ENCFF290MBX/@@download/ENCFF290MBX.bam released s3://encode-public/2018/02/22/73a0e281-2d64-45bf-96e5-d03df0842967/ENCFF290MBX.bam ENCODE3 hg19 archived low read length ENCFF002ECN fastq fastq reads ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 single-ended 1395637501 Michael Snyder, Stanford df3d88e9e9ca4d538a3a6e132cd7ca7b SRA:SRR5111807 https://www.encodeproject.org/files/ENCFF002ECN/@@download/ENCFF002ECN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/0aeb9461-d7e5-4633-9374-44eaf21f4e6f/ENCFF002ECN.fastq.gz low read length ENCFF002ECO fastq fastq reads ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 single-ended 1385676737 Michael Snyder, Stanford a50d7445167a0e309710f5f2f0f98a93 SRA:SRR5111806 https://www.encodeproject.org/files/ENCFF002ECO/@@download/ENCFF002ECO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/9c71ceee-9ef4-4325-b752-ad06568ed855/ENCFF002ECO.fastq.gz low read length ENCFF939XHK bam bam alignments hg19 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECO/ 1345048473 ENCODE Processing Pipeline f700d63a1a3c726750aa099876feccd0 https://www.encodeproject.org/files/ENCFF939XHK/@@download/ENCFF939XHK.bam released s3://encode-public/2015/10/29/65a4fe21-075d-4a73-844b-f320828840c7/ENCFF939XHK.bam ENCODE3 hg19 archived low read length ENCFF316UXC bam bam alignments hg19 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECN/ 1366863943 ENCODE Processing Pipeline 94406a8326f8fe234b1a114859f91cd1 https://www.encodeproject.org/files/ENCFF316UXC/@@download/ENCFF316UXC.bam released s3://encode-public/2015/10/29/713cf7d4-8fba-49fb-bb1a-518118bcf29a/ENCFF316UXC.bam ENCODE3 hg19 archived low read length ENCFF469FYX bam bam unfiltered alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECO/ 1886996574 ENCODE Processing Pipeline 6ba13c23cbc0475294f73cd94b96b178 https://www.encodeproject.org/files/ENCFF469FYX/@@download/ENCFF469FYX.bam released s3://encode-public/2016/05/06/6970c19d-e935-4c49-8344-e974e75af603/ENCFF469FYX.bam ENCODE3 GRCh38 archived low read length ENCFF459QXO bam bam alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECN/ 1366370692 ENCODE Processing Pipeline 197ec35ec52ef1bb13db0bdc5013f3dc https://www.encodeproject.org/files/ENCFF459QXO/@@download/ENCFF459QXO.bam released s3://encode-public/2016/05/06/30d6f9dd-6892-4075-acad-3dfe1c201487/ENCFF459QXO.bam ENCODE3 GRCh38 archived low read length ENCFF388MUS bam bam unfiltered alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECN/ 1895979053 ENCODE Processing Pipeline d5d60e2e3660923de149e6b4b18b28ca https://www.encodeproject.org/files/ENCFF388MUS/@@download/ENCFF388MUS.bam released s3://encode-public/2016/05/06/474dce86-f245-4f46-9c1b-018aeff2a22d/ENCFF388MUS.bam ENCODE3 GRCh38 archived low read length ENCFF714ZPY bam bam alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECO/ 1344565070 ENCODE Processing Pipeline f81d3de6de157cb75a459c1c9d76ce64 https://www.encodeproject.org/files/ENCFF714ZPY/@@download/ENCFF714ZPY.bam released s3://encode-public/2016/05/06/608d5b8f-10b5-4cc2-b69e-26e036c1f377/ENCFF714ZPY.bam ENCODE3 GRCh38 archived low read length ENCFF763IXA bam bam unfiltered alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECO/, /files/ENCFF110MCL/ 1838946616 ENCODE Processing Pipeline 230466caf2cff3dbe3b9762e7429f983 https://www.encodeproject.org/files/ENCFF763IXA/@@download/ENCFF763IXA.bam released s3://encode-public/2020/06/13/c9fcc3b4-7b4e-406b-a2be-afd40c44bfcc/ENCFF763IXA.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF172RXS bam bam alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECO/, /files/ENCFF110MCL/ 1440420962 ENCODE Processing Pipeline 50366fd53a9ca953578af30b0aae6c39 https://www.encodeproject.org/files/ENCFF172RXS/@@download/ENCFF172RXS.bam released s3://encode-public/2020/06/13/0e79e0c6-2bd1-4f46-a974-2ef448e046d6/ENCFF172RXS.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF514BAG bam bam unfiltered alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECN/, /files/ENCFF110MCL/ 1846454032 ENCODE Processing Pipeline 84c69474b74ded5fe9f872b5653a1b95 https://www.encodeproject.org/files/ENCFF514BAG/@@download/ENCFF514BAG.bam released s3://encode-public/2020/06/13/7e629a74-095f-48e6-8be3-ddf02da69d70/ENCFF514BAG.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF190YLP bam bam alignments GRCh38 ENCSR580ECR Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECN/, /files/ENCFF110MCL/ 1462519933 ENCODE Processing Pipeline 0cd50bdf5a91c09eda200c85f585233c https://www.encodeproject.org/files/ENCFF190YLP/@@download/ENCFF190YLP.bam released s3://encode-public/2020/06/13/f368db78-dedb-4b70-9e26-514829bbbabe/ENCFF190YLP.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF865AES fastq fastq reads ENCSR066HHD Control ChIP-seq /fly-donors/ENCDO826YGT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 672777022 Kevin White, UChicago d622103d482203d38d98747daae4860f https://www.encodeproject.org/files/ENCFF865AES/@@download/ENCFF865AES.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/7c9bb58d-3708-4358-8f73-0a1e93248023/ENCFF865AES.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF827OQY bam bam alignments dm3 ENCSR066HHD Control ChIP-seq /fly-donors/ENCDO826YGT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF865AES/ 987740528 Kevin White, UChicago fff8b06efe8da1f667341263c83f85f9 https://www.encodeproject.org/files/ENCFF827OQY/@@download/ENCFF827OQY.bam released s3://encode-public/2015/08/03/b87e9c21-a3df-4c96-bd7d-0b8307185d22/ENCFF827OQY.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF371KFD bigWig bigWig read-depth normalized signal dm3 ENCSR066HHD Control ChIP-seq /fly-donors/ENCDO826YGT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF827OQY/ 15425229 Kevin White, UChicago d4a45d2d36af5e49c8a63f745a82b9bd https://www.encodeproject.org/files/ENCFF371KFD/@@download/ENCFF371KFD.bigWig released s3://encode-public/2015/10/05/6712bdb1-4362-409c-a740-f467d6ca4586/ENCFF371KFD.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF903UCV bigWig bigWig signal of unique reads dm3 ENCSR066HHD Control ChIP-seq /fly-donors/ENCDO826YGT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF827OQY/ 15405726 Kevin White, UChicago 8f0b18a70ec5e90ad2f6fd6bcc14e223 https://www.encodeproject.org/files/ENCFF903UCV/@@download/ENCFF903UCV.bigWig released s3://encode-public/2015/10/05/54fc0651-3d9d-445a-9781-d1cc1bae08fb/ENCFF903UCV.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF251KQS bam bam alignments dm6 ENCSR066HHD Control ChIP-seq /fly-donors/ENCDO826YGT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF865AES/ 982475744 Kevin White, UChicago f4d0711d7940f987c3ff54d5ad458aef https://www.encodeproject.org/files/ENCFF251KQS/@@download/ENCFF251KQS.bam released s3://encode-public/2016/04/21/f8162ce8-00b5-4f74-bc8b-c6365f3b1061/ENCFF251KQS.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF128MFQ bigWig bigWig signal of unique reads dm6 ENCSR066HHD Control ChIP-seq /fly-donors/ENCDO826YGT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF251KQS/ 17470827 Kevin White, UChicago 61e95c349d311a4bbe347dbe3961a2b7 https://www.encodeproject.org/files/ENCFF128MFQ/@@download/ENCFF128MFQ.bigWig released s3://encode-public/2016/06/20/b0a844fa-6d3b-4b6a-90da-8d2dde63167b/ENCFF128MFQ.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF662DKS bigWig bigWig read-depth normalized signal dm6 ENCSR066HHD Control ChIP-seq /fly-donors/ENCDO826YGT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34974/'], '@type': ['Target', 'Item'], 'name': 'chif-dmelanogaster', 'label': 'chif', '@id': '/targets/chif-dmelanogaster/', 'title': 'chif (Drosophila melanogaster)', 'investigated_as': ['DNA replication'], 'uuid': '648833f2-4823-4e8c-828e-3784ae8d0b20', 'status': 'released'} dm3 2L 16333616 16355018 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF251KQS/ 17502318 Kevin White, UChicago ffa9e448e24771dc65cb404ec3dee463 https://www.encodeproject.org/files/ENCFF662DKS/@@download/ENCFF662DKS.bigWig released s3://encode-public/2016/06/20/1984ef7a-b86a-4b21-8db5-9ca55626645f/ENCFF662DKS.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF610ZGU fastq fastq reads ENCSR261JGN Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 196203799 Michael Snyder, Stanford bed0c7d04771c383b09c17ed133dc304 https://www.encodeproject.org/files/ENCFF610ZGU/@@download/ENCFF610ZGU.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/2190e176-cec5-4d6d-883e-ee69dd4e95bf/ENCFF610ZGU.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF160UOP fastq fastq reads ENCSR261JGN Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 211110625 Kevin White, UChicago d1a399a257ac73be0162c8e8743235ce https://www.encodeproject.org/files/ENCFF160UOP/@@download/ENCFF160UOP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF310XZM/, /files/ENCFF394CCO/ archived s3://encode-public/2016/10/25/bfd8b0fc-ce14-4cc7-af91-f03bc9559fa1/ENCFF160UOP.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF122CET fastq fastq reads ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 224459367 Michael Snyder, Stanford 9ffcce4bb1efd5f126459e3f2d64c865 https://www.encodeproject.org/files/ENCFF122CET/@@download/ENCFF122CET.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/fb1a7dc6-685d-403d-a372-06bcd5cd8a0a/ENCFF122CET.fastq.gz ENCFF827HZW fastq fastq reads ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 267468678 Michael Snyder, Stanford 704037547312524cc1542001d86b8885 https://www.encodeproject.org/files/ENCFF827HZW/@@download/ENCFF827HZW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/86d91682-4e4d-46bf-bc58-a83e02b7ecba/ENCFF827HZW.fastq.gz ENCFF185SID bam bam alignments ce10 ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF827HZW/, /files/ENCFF122CET/, /files/ENCFF987UMF/ 343752975 Kevin White, UChicago 75169a3133b9cb26799d2896a6a8c8bb https://www.encodeproject.org/files/ENCFF185SID/@@download/ENCFF185SID.bam released s3://encode-public/2016/10/18/91ad926a-e86b-4dac-bb1d-db99989c2498/ENCFF185SID.bam Lab custom ce10 archived ENCFF077DIQ bam bam alignments ce11 ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF827HZW/, /files/ENCFF122CET/, /files/ENCFF586MOL/ 344125191 Kevin White, UChicago efcc5d0a1453ebd414477ca7a7989122 https://www.encodeproject.org/files/ENCFF077DIQ/@@download/ENCFF077DIQ.bam released s3://encode-public/2016/10/18/0d439f6d-4f7b-4b63-861b-8e34533a0011/ENCFF077DIQ.bam Lab custom ce11 released ENCFF795UXC bigWig bigWig read-depth normalized signal ce11 ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF077DIQ/ 10005757 Kevin White, UChicago 9e6b63ca15648670a3094348fa275a6d https://www.encodeproject.org/files/ENCFF795UXC/@@download/ENCFF795UXC.bigWig released s3://encode-public/2017/11/20/60e1568b-efbb-43c2-a6e7-12f566fc5fc8/ENCFF795UXC.bigWig Lab custom ce11 released ENCFF413SUF bigWig bigWig signal of unique reads ce11 ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF077DIQ/ 10061596 Kevin White, UChicago 7523a8872ef69b901c57022f15004379 https://www.encodeproject.org/files/ENCFF413SUF/@@download/ENCFF413SUF.bigWig released s3://encode-public/2017/11/20/3a888a0f-e33d-4e02-a2b5-ad5935e22ec3/ENCFF413SUF.bigWig Lab custom ce11 released ENCFF737PTT bigWig bigWig read-depth normalized signal ce10 ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF185SID/ 10006171 Kevin White, UChicago 4b8d6a927097cb2a4117c280686c166b https://www.encodeproject.org/files/ENCFF737PTT/@@download/ENCFF737PTT.bigWig released s3://encode-public/2017/11/20/66a4bafa-4fb1-421d-9b07-60da7c6e052d/ENCFF737PTT.bigWig Lab custom ce10 archived ENCFF787SOO bigWig bigWig signal of unique reads ce10 ENCSR006GXP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF185SID/ 10061878 Kevin White, UChicago 8a3763db1e98c11927776a729f2fe70c https://www.encodeproject.org/files/ENCFF787SOO/@@download/ENCFF787SOO.bigWig released s3://encode-public/2017/11/20/e2cb0281-3c3d-4731-9081-d79272044e8a/ENCFF787SOO.bigWig Lab custom ce10 archived ENCFF543LSH fastq fastq reads ENCSR722SAA Control ChIP-seq /fly-donors/ENCDO766OZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34275/'], '@type': ['Target', 'Item'], 'name': 'CG3838-dmelanogaster', 'label': 'CG3838', '@id': '/targets/CG3838-dmelanogaster/', 'title': 'CG3838 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3c47b44f-9bb6-4938-84f5-5147a8385884', 'status': 'released'} dm3 2L 9560915 9583070 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 414550244 Kevin White, UChicago 109b69aed1803a7d293d5076b39e1984 https://www.encodeproject.org/files/ENCFF543LSH/@@download/ENCFF543LSH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/2d56edd6-6a31-41f9-99d0-31bc230827f3/ENCFF543LSH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF477KPR bam bam alignments dm3 ENCSR722SAA Control ChIP-seq /fly-donors/ENCDO766OZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34275/'], '@type': ['Target', 'Item'], 'name': 'CG3838-dmelanogaster', 'label': 'CG3838', '@id': '/targets/CG3838-dmelanogaster/', 'title': 'CG3838 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3c47b44f-9bb6-4938-84f5-5147a8385884', 'status': 'released'} dm3 2L 9560915 9583070 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF543LSH/ 502805586 Kevin White, UChicago 5aa9cf1982984b527e8d07e1953adc19 https://www.encodeproject.org/files/ENCFF477KPR/@@download/ENCFF477KPR.bam released s3://encode-public/2015/08/05/14eb91ce-d3b6-472d-b709-5edce26ed555/ENCFF477KPR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF893CNT bigWig bigWig read-depth normalized signal dm3 ENCSR722SAA Control ChIP-seq /fly-donors/ENCDO766OZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34275/'], '@type': ['Target', 'Item'], 'name': 'CG3838-dmelanogaster', 'label': 'CG3838', '@id': '/targets/CG3838-dmelanogaster/', 'title': 'CG3838 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3c47b44f-9bb6-4938-84f5-5147a8385884', 'status': 'released'} dm3 2L 9560915 9583070 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF477KPR/ 15226645 Kevin White, UChicago e5a641cc870a29ccd473233a846a68e9 https://www.encodeproject.org/files/ENCFF893CNT/@@download/ENCFF893CNT.bigWig released s3://encode-public/2015/10/07/3c70ba5b-590d-43ee-bbe5-dcc359ace91d/ENCFF893CNT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF786EJT bigWig bigWig signal of unique reads dm3 ENCSR722SAA Control ChIP-seq /fly-donors/ENCDO766OZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34275/'], '@type': ['Target', 'Item'], 'name': 'CG3838-dmelanogaster', 'label': 'CG3838', '@id': '/targets/CG3838-dmelanogaster/', 'title': 'CG3838 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3c47b44f-9bb6-4938-84f5-5147a8385884', 'status': 'released'} dm3 2L 9560915 9583070 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF477KPR/ 15272667 Kevin White, UChicago 6b22c1783dea1f5549038cadb76908aa https://www.encodeproject.org/files/ENCFF786EJT/@@download/ENCFF786EJT.bigWig released s3://encode-public/2015/10/07/645e5380-2ffa-4335-a458-e9942ab62e2b/ENCFF786EJT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF529JMY bam bam alignments dm6 ENCSR722SAA Control ChIP-seq /fly-donors/ENCDO766OZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34275/'], '@type': ['Target', 'Item'], 'name': 'CG3838-dmelanogaster', 'label': 'CG3838', '@id': '/targets/CG3838-dmelanogaster/', 'title': 'CG3838 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3c47b44f-9bb6-4938-84f5-5147a8385884', 'status': 'released'} dm3 2L 9560915 9583070 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF543LSH/ 498814955 Kevin White, UChicago 459c6bc931a2be595f3776c750d6b444 https://www.encodeproject.org/files/ENCFF529JMY/@@download/ENCFF529JMY.bam released s3://encode-public/2016/04/21/f3852e29-3369-4f56-b3cb-6e4717495a73/ENCFF529JMY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF907MYQ bigWig bigWig read-depth normalized signal dm6 ENCSR722SAA Control ChIP-seq /fly-donors/ENCDO766OZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34275/'], '@type': ['Target', 'Item'], 'name': 'CG3838-dmelanogaster', 'label': 'CG3838', '@id': '/targets/CG3838-dmelanogaster/', 'title': 'CG3838 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3c47b44f-9bb6-4938-84f5-5147a8385884', 'status': 'released'} dm3 2L 9560915 9583070 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF529JMY/ 17325943 Kevin White, UChicago 67eb9c738cab8cf88f2c35ebf04191ed https://www.encodeproject.org/files/ENCFF907MYQ/@@download/ENCFF907MYQ.bigWig released s3://encode-public/2016/06/20/484257a6-379d-457a-82b5-cdeb271fafe7/ENCFF907MYQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF403WIK bigWig bigWig signal of unique reads dm6 ENCSR722SAA Control ChIP-seq /fly-donors/ENCDO766OZP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34275/'], '@type': ['Target', 'Item'], 'name': 'CG3838-dmelanogaster', 'label': 'CG3838', '@id': '/targets/CG3838-dmelanogaster/', 'title': 'CG3838 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '3c47b44f-9bb6-4938-84f5-5147a8385884', 'status': 'released'} dm3 2L 9560915 9583070 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF529JMY/ 17384649 Kevin White, UChicago d0c8f5f3a76d9e3485501b56c621b1ce https://www.encodeproject.org/files/ENCFF403WIK/@@download/ENCFF403WIK.bigWig released s3://encode-public/2016/06/20/dd410b81-e09f-467b-957e-cc9c3604169f/ENCFF403WIK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF884ZJO fastq fastq reads ENCSR986ULH Control ChIP-seq /fly-donors/ENCDO407SWQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44544/'], '@type': ['Target', 'Item'], 'name': 'Hnf4-dmelanogaster', 'label': 'Hnf4', '@id': '/targets/Hnf4-dmelanogaster/', 'title': 'Hnf4 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0b8151d9-cd67-4537-a562-4ef2c80170ba', 'status': 'released'} dm3 2L 8649936 8745695 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2320984089 Kevin White, UChicago ccc184d68da10670a54f1ab7e7254f34 https://www.encodeproject.org/files/ENCFF884ZJO/@@download/ENCFF884ZJO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/2af2ba35-c1da-4acf-b51b-32c7bf227014/ENCFF884ZJO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF848ZYQ bam bam alignments dm3 ENCSR986ULH Control ChIP-seq /fly-donors/ENCDO407SWQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44544/'], '@type': ['Target', 'Item'], 'name': 'Hnf4-dmelanogaster', 'label': 'Hnf4', '@id': '/targets/Hnf4-dmelanogaster/', 'title': 'Hnf4 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0b8151d9-cd67-4537-a562-4ef2c80170ba', 'status': 'released'} dm3 2L 8649936 8745695 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF884ZJO/ 3074138663 Kevin White, UChicago 614812a73fd1e690b5826362458fecae https://www.encodeproject.org/files/ENCFF848ZYQ/@@download/ENCFF848ZYQ.bam released s3://encode-public/2015/08/03/5dc09022-ddb1-472a-b5f2-6637d3d9a03d/ENCFF848ZYQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF894WSV bigWig bigWig read-depth normalized signal dm3 ENCSR986ULH Control ChIP-seq /fly-donors/ENCDO407SWQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44544/'], '@type': ['Target', 'Item'], 'name': 'Hnf4-dmelanogaster', 'label': 'Hnf4', '@id': '/targets/Hnf4-dmelanogaster/', 'title': 'Hnf4 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0b8151d9-cd67-4537-a562-4ef2c80170ba', 'status': 'released'} dm3 2L 8649936 8745695 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF848ZYQ/ 15520414 Kevin White, UChicago 1f273aa21a724d7b2013e89a672341b0 https://www.encodeproject.org/files/ENCFF894WSV/@@download/ENCFF894WSV.bigWig released s3://encode-public/2015/10/06/07481edd-b8fc-49cc-8b53-3f3a822adbf4/ENCFF894WSV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF725TAR bigWig bigWig signal of unique reads dm3 ENCSR986ULH Control ChIP-seq /fly-donors/ENCDO407SWQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44544/'], '@type': ['Target', 'Item'], 'name': 'Hnf4-dmelanogaster', 'label': 'Hnf4', '@id': '/targets/Hnf4-dmelanogaster/', 'title': 'Hnf4 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0b8151d9-cd67-4537-a562-4ef2c80170ba', 'status': 'released'} dm3 2L 8649936 8745695 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF848ZYQ/ 15524388 Kevin White, UChicago 0d3741aa76ba6b89199d32b3e265bafb https://www.encodeproject.org/files/ENCFF725TAR/@@download/ENCFF725TAR.bigWig released s3://encode-public/2015/10/06/845bf458-1cca-4cf8-a760-90a04bf969b1/ENCFF725TAR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF854HCM bam bam alignments dm6 ENCSR986ULH Control ChIP-seq /fly-donors/ENCDO407SWQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44544/'], '@type': ['Target', 'Item'], 'name': 'Hnf4-dmelanogaster', 'label': 'Hnf4', '@id': '/targets/Hnf4-dmelanogaster/', 'title': 'Hnf4 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0b8151d9-cd67-4537-a562-4ef2c80170ba', 'status': 'released'} dm3 2L 8649936 8745695 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF884ZJO/ 3066404256 Kevin White, UChicago 5a3de495f3cd2dc25868e0d32e051271 https://www.encodeproject.org/files/ENCFF854HCM/@@download/ENCFF854HCM.bam released s3://encode-public/2016/04/21/c72aed08-555b-4486-b388-aeb77d900a82/ENCFF854HCM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF243FER bigWig bigWig signal of unique reads dm6 ENCSR986ULH Control ChIP-seq /fly-donors/ENCDO407SWQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44544/'], '@type': ['Target', 'Item'], 'name': 'Hnf4-dmelanogaster', 'label': 'Hnf4', '@id': '/targets/Hnf4-dmelanogaster/', 'title': 'Hnf4 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0b8151d9-cd67-4537-a562-4ef2c80170ba', 'status': 'released'} dm3 2L 8649936 8745695 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF854HCM/ 17627509 Kevin White, UChicago 0b5e9dc0b9a630ded6c8caffa6723ece https://www.encodeproject.org/files/ENCFF243FER/@@download/ENCFF243FER.bigWig released s3://encode-public/2016/06/21/e5921c83-daa9-44fd-bbcc-799e196b0f31/ENCFF243FER.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF186WVD bigWig bigWig read-depth normalized signal dm6 ENCSR986ULH Control ChIP-seq /fly-donors/ENCDO407SWQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44544/'], '@type': ['Target', 'Item'], 'name': 'Hnf4-dmelanogaster', 'label': 'Hnf4', '@id': '/targets/Hnf4-dmelanogaster/', 'title': 'Hnf4 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0b8151d9-cd67-4537-a562-4ef2c80170ba', 'status': 'released'} dm3 2L 8649936 8745695 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF854HCM/ 17623891 Kevin White, UChicago 6c0c21b09e9945be007b66e6f0a59c7c https://www.encodeproject.org/files/ENCFF186WVD/@@download/ENCFF186WVD.bigWig released s3://encode-public/2016/06/21/aef819b7-9997-4d8e-8c1e-9e2a97ce75c3/ENCFF186WVD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF242CUD fastq fastq reads ENCSR946VOY Control ChIP-seq /fly-donors/ENCDO698HDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31678/'], '@type': ['Target', 'Item'], 'name': 'CHES-1-like-dmelanogaster', 'label': 'CHES-1-like', '@id': '/targets/CHES-1-like-dmelanogaster/', 'title': 'CHES-1-like (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad714a2f-7a77-4722-9af3-ae530966bb0f', 'status': 'released'} dm3 X 7558378 7606694 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 578185568 Kevin White, UChicago d783061d6d8e9cd30a45498c1d8e792c https://www.encodeproject.org/files/ENCFF242CUD/@@download/ENCFF242CUD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/048cac17-913e-4114-8abf-cbc26f11abe8/ENCFF242CUD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF870EDO bam bam alignments dm3 ENCSR946VOY Control ChIP-seq /fly-donors/ENCDO698HDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31678/'], '@type': ['Target', 'Item'], 'name': 'CHES-1-like-dmelanogaster', 'label': 'CHES-1-like', '@id': '/targets/CHES-1-like-dmelanogaster/', 'title': 'CHES-1-like (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad714a2f-7a77-4722-9af3-ae530966bb0f', 'status': 'released'} dm3 X 7558378 7606694 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF242CUD/ 853731106 Kevin White, UChicago e1a06378bfa3bc25a9b13b5c21953b6b https://www.encodeproject.org/files/ENCFF870EDO/@@download/ENCFF870EDO.bam released s3://encode-public/2015/08/03/d2652a0c-4065-43ba-8bd0-f1911a3774bd/ENCFF870EDO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF375RVJ bigWig bigWig signal of unique reads dm3 ENCSR946VOY Control ChIP-seq /fly-donors/ENCDO698HDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31678/'], '@type': ['Target', 'Item'], 'name': 'CHES-1-like-dmelanogaster', 'label': 'CHES-1-like', '@id': '/targets/CHES-1-like-dmelanogaster/', 'title': 'CHES-1-like (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad714a2f-7a77-4722-9af3-ae530966bb0f', 'status': 'released'} dm3 X 7558378 7606694 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870EDO/ 15376846 Kevin White, UChicago 66ba272a180799f6683e03b766448a91 https://www.encodeproject.org/files/ENCFF375RVJ/@@download/ENCFF375RVJ.bigWig released s3://encode-public/2015/10/05/fc9c7985-45d7-4f72-83cc-eac1afcd9221/ENCFF375RVJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF995SWE bigWig bigWig read-depth normalized signal dm3 ENCSR946VOY Control ChIP-seq /fly-donors/ENCDO698HDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31678/'], '@type': ['Target', 'Item'], 'name': 'CHES-1-like-dmelanogaster', 'label': 'CHES-1-like', '@id': '/targets/CHES-1-like-dmelanogaster/', 'title': 'CHES-1-like (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad714a2f-7a77-4722-9af3-ae530966bb0f', 'status': 'released'} dm3 X 7558378 7606694 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF870EDO/ 15412746 Kevin White, UChicago 5926799885f2517f4e58bcf9be071f80 https://www.encodeproject.org/files/ENCFF995SWE/@@download/ENCFF995SWE.bigWig released s3://encode-public/2015/10/05/1f49fcb8-6bb6-4498-a65c-e3896830bb32/ENCFF995SWE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF873CLW bam bam alignments dm6 ENCSR946VOY Control ChIP-seq /fly-donors/ENCDO698HDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31678/'], '@type': ['Target', 'Item'], 'name': 'CHES-1-like-dmelanogaster', 'label': 'CHES-1-like', '@id': '/targets/CHES-1-like-dmelanogaster/', 'title': 'CHES-1-like (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad714a2f-7a77-4722-9af3-ae530966bb0f', 'status': 'released'} dm3 X 7558378 7606694 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF242CUD/ 851311125 Kevin White, UChicago ca64d2f88a85a8a1cf071bcf364dba52 https://www.encodeproject.org/files/ENCFF873CLW/@@download/ENCFF873CLW.bam released s3://encode-public/2016/04/21/6036bbe1-266d-4861-908f-aeefb9479635/ENCFF873CLW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF223XXX bigWig bigWig signal of unique reads dm6 ENCSR946VOY Control ChIP-seq /fly-donors/ENCDO698HDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31678/'], '@type': ['Target', 'Item'], 'name': 'CHES-1-like-dmelanogaster', 'label': 'CHES-1-like', '@id': '/targets/CHES-1-like-dmelanogaster/', 'title': 'CHES-1-like (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad714a2f-7a77-4722-9af3-ae530966bb0f', 'status': 'released'} dm3 X 7558378 7606694 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF873CLW/ 17474663 Kevin White, UChicago d2706ce2164ad71a4a6f22c7cadab3e1 https://www.encodeproject.org/files/ENCFF223XXX/@@download/ENCFF223XXX.bigWig released s3://encode-public/2016/06/20/02fa529b-7fda-45dd-87f8-1add46c78650/ENCFF223XXX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF177CIS bigWig bigWig read-depth normalized signal dm6 ENCSR946VOY Control ChIP-seq /fly-donors/ENCDO698HDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31678/'], '@type': ['Target', 'Item'], 'name': 'CHES-1-like-dmelanogaster', 'label': 'CHES-1-like', '@id': '/targets/CHES-1-like-dmelanogaster/', 'title': 'CHES-1-like (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ad714a2f-7a77-4722-9af3-ae530966bb0f', 'status': 'released'} dm3 X 7558378 7606694 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF873CLW/ 17515816 Kevin White, UChicago caf25a8e1cf8ac9d0591866375a8c3ae https://www.encodeproject.org/files/ENCFF177CIS/@@download/ENCFF177CIS.bigWig released s3://encode-public/2016/06/20/875dbea3-0d51-42e5-b976-142a767e6946/ENCFF177CIS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF317UGK fastq fastq reads ENCSR184FJG Control ChIP-seq /fly-donors/ENCDO156CQC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} dm3 3R 9840990 9917823 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1052066693 Kevin White, UChicago b283b870cbbb0fd21ab321e4fd8d91f7 https://www.encodeproject.org/files/ENCFF317UGK/@@download/ENCFF317UGK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/61c0ebfd-939a-4435-8186-4d1332a337d6/ENCFF317UGK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF116RZG bam bam alignments dm3 ENCSR184FJG Control ChIP-seq /fly-donors/ENCDO156CQC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} dm3 3R 9840990 9917823 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF317UGK/ 1544235444 Kevin White, UChicago 8dfccf50a9823e75dc083fd674559618 https://www.encodeproject.org/files/ENCFF116RZG/@@download/ENCFF116RZG.bam released s3://encode-public/2015/08/03/98e59e17-54e9-43fd-8fce-62e9221018ca/ENCFF116RZG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF763QHA bigWig bigWig read-depth normalized signal dm3 ENCSR184FJG Control ChIP-seq /fly-donors/ENCDO156CQC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} dm3 3R 9840990 9917823 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF116RZG/ 15358020 Kevin White, UChicago 821e528f3d5cc4107e17b82b77c831cc https://www.encodeproject.org/files/ENCFF763QHA/@@download/ENCFF763QHA.bigWig released s3://encode-public/2015/10/05/80d6b4f7-a7c3-495d-82fa-eeba14d2f056/ENCFF763QHA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF468QZR bigWig bigWig signal of unique reads dm3 ENCSR184FJG Control ChIP-seq /fly-donors/ENCDO156CQC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} dm3 3R 9840990 9917823 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF116RZG/ 15369018 Kevin White, UChicago 66e58f4041c464edfbe9c1ef41eb2543 https://www.encodeproject.org/files/ENCFF468QZR/@@download/ENCFF468QZR.bigWig released s3://encode-public/2015/10/05/959ab218-d1ee-4895-8ff8-f45990678b86/ENCFF468QZR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF776SRL bam bam alignments dm6 ENCSR184FJG Control ChIP-seq /fly-donors/ENCDO156CQC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} dm3 3R 9840990 9917823 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF317UGK/ 1530691968 Kevin White, UChicago 5ac582ab420408fe7b3bde5570da7e2c https://www.encodeproject.org/files/ENCFF776SRL/@@download/ENCFF776SRL.bam released s3://encode-public/2016/04/21/34e38431-b5df-4acf-8cd5-c76af06acb43/ENCFF776SRL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF063IJI bigWig bigWig read-depth normalized signal dm6 ENCSR184FJG Control ChIP-seq /fly-donors/ENCDO156CQC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} dm3 3R 9840990 9917823 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF776SRL/ 17492112 Kevin White, UChicago 49313b54f95508885164550de3fb85ec https://www.encodeproject.org/files/ENCFF063IJI/@@download/ENCFF063IJI.bigWig released s3://encode-public/2016/06/20/2675b6b6-4735-42cd-836f-d427cf3c78f2/ENCFF063IJI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF317QCZ bigWig bigWig signal of unique reads dm6 ENCSR184FJG Control ChIP-seq /fly-donors/ENCDO156CQC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} dm3 3R 9840990 9917823 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF776SRL/ 17502029 Kevin White, UChicago a07ac0c3f92285d1ef18cbc0c38a349e https://www.encodeproject.org/files/ENCFF317QCZ/@@download/ENCFF317QCZ.bigWig released s3://encode-public/2016/06/20/74cfd790-91a8-4dc5-a5a8-0f2d703cb5fb/ENCFF317QCZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF348VBW fastq fastq reads ENCSR382DPD Control ChIP-seq /fly-donors/ENCDO747GXL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36240/'], '@type': ['Target', 'Item'], 'name': 'en-dmelanogaster', 'label': 'en', '@id': '/targets/en-dmelanogaster/', 'title': 'en (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2728ea62-a657-412f-bbb3-51dec37845a1', 'status': 'released'} dm3 2R 7404694 7425786 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 977515142 Kevin White, UChicago 6a766f38b01a4b8fe8eec6628eb4dd22 https://www.encodeproject.org/files/ENCFF348VBW/@@download/ENCFF348VBW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/4dedadf5-0ef7-4af5-aa1a-a516427e0c2f/ENCFF348VBW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF622LBS bam bam alignments dm3 ENCSR382DPD Control ChIP-seq /fly-donors/ENCDO747GXL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36240/'], '@type': ['Target', 'Item'], 'name': 'en-dmelanogaster', 'label': 'en', '@id': '/targets/en-dmelanogaster/', 'title': 'en (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2728ea62-a657-412f-bbb3-51dec37845a1', 'status': 'released'} dm3 2R 7404694 7425786 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF348VBW/ 1422205797 Kevin White, UChicago 1b9edb1ad1f96492672bc2206d5b00c8 https://www.encodeproject.org/files/ENCFF622LBS/@@download/ENCFF622LBS.bam released s3://encode-public/2015/08/05/f4a3c58f-9174-45f0-b51b-dacfcf118b73/ENCFF622LBS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF910HZD bigWig bigWig signal of unique reads dm3 ENCSR382DPD Control ChIP-seq /fly-donors/ENCDO747GXL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36240/'], '@type': ['Target', 'Item'], 'name': 'en-dmelanogaster', 'label': 'en', '@id': '/targets/en-dmelanogaster/', 'title': 'en (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2728ea62-a657-412f-bbb3-51dec37845a1', 'status': 'released'} dm3 2R 7404694 7425786 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF622LBS/ 15458498 Kevin White, UChicago ef9faac48c79da81314cb6ed30abe302 https://www.encodeproject.org/files/ENCFF910HZD/@@download/ENCFF910HZD.bigWig released s3://encode-public/2015/10/07/eb557d0e-cdeb-4ff6-8d57-d17d8ecdb229/ENCFF910HZD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF403SQH bigWig bigWig read-depth normalized signal dm3 ENCSR382DPD Control ChIP-seq /fly-donors/ENCDO747GXL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36240/'], '@type': ['Target', 'Item'], 'name': 'en-dmelanogaster', 'label': 'en', '@id': '/targets/en-dmelanogaster/', 'title': 'en (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2728ea62-a657-412f-bbb3-51dec37845a1', 'status': 'released'} dm3 2R 7404694 7425786 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF622LBS/ 15514695 Kevin White, UChicago 50dda4d9b86ad82b0579bbb6c910330d https://www.encodeproject.org/files/ENCFF403SQH/@@download/ENCFF403SQH.bigWig released s3://encode-public/2015/10/07/2dc8a18b-213c-4f2b-ab33-8f8575a29ebf/ENCFF403SQH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF278WXN bam bam alignments dm6 ENCSR382DPD Control ChIP-seq /fly-donors/ENCDO747GXL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36240/'], '@type': ['Target', 'Item'], 'name': 'en-dmelanogaster', 'label': 'en', '@id': '/targets/en-dmelanogaster/', 'title': 'en (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2728ea62-a657-412f-bbb3-51dec37845a1', 'status': 'released'} dm3 2R 7404694 7425786 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF348VBW/ 1418000495 Kevin White, UChicago e770deeb4b05aa009ade78991dc0d125 https://www.encodeproject.org/files/ENCFF278WXN/@@download/ENCFF278WXN.bam released s3://encode-public/2016/04/21/a042475f-c4a4-4e77-9f87-3d2ffc840e82/ENCFF278WXN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF233IKA bigWig bigWig read-depth normalized signal dm6 ENCSR382DPD Control ChIP-seq /fly-donors/ENCDO747GXL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36240/'], '@type': ['Target', 'Item'], 'name': 'en-dmelanogaster', 'label': 'en', '@id': '/targets/en-dmelanogaster/', 'title': 'en (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2728ea62-a657-412f-bbb3-51dec37845a1', 'status': 'released'} dm3 2R 7404694 7425786 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF278WXN/ 17619002 Kevin White, UChicago dac5379d9c648b6cb7fdefae222ec026 https://www.encodeproject.org/files/ENCFF233IKA/@@download/ENCFF233IKA.bigWig released s3://encode-public/2016/06/21/9961fda7-1af1-4b6d-99f5-d6389d27ede6/ENCFF233IKA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF315HTD bigWig bigWig signal of unique reads dm6 ENCSR382DPD Control ChIP-seq /fly-donors/ENCDO747GXL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36240/'], '@type': ['Target', 'Item'], 'name': 'en-dmelanogaster', 'label': 'en', '@id': '/targets/en-dmelanogaster/', 'title': 'en (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2728ea62-a657-412f-bbb3-51dec37845a1', 'status': 'released'} dm3 2R 7404694 7425786 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF278WXN/ 17528987 Kevin White, UChicago c19128ef0c69fcbf890474a6df8a257e https://www.encodeproject.org/files/ENCFF315HTD/@@download/ENCFF315HTD.bigWig released s3://encode-public/2016/06/21/6bd3cfe5-3e85-4e36-8718-0defae775c67/ENCFF315HTD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF128GVY fastq fastq reads ENCSR118DLX Control ChIP-seq /fly-donors/ENCDO824ZEP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768719/'], '@type': ['Target', 'Item'], 'name': 'luna-dmelanogaster', 'label': 'luna', '@id': '/targets/luna-dmelanogaster/', 'title': 'luna (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '19373b7d-4194-4f0f-9d66-16e45c46bae6', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 308949323 Kevin White, UChicago 11eac69638114d8836568132945ed42c https://www.encodeproject.org/files/ENCFF128GVY/@@download/ENCFF128GVY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/4ef69665-ce4c-4ebf-89fe-f4ae707007e5/ENCFF128GVY.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF659AIN bam bam alignments dm3 ENCSR118DLX Control ChIP-seq /fly-donors/ENCDO824ZEP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768719/'], '@type': ['Target', 'Item'], 'name': 'luna-dmelanogaster', 'label': 'luna', '@id': '/targets/luna-dmelanogaster/', 'title': 'luna (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '19373b7d-4194-4f0f-9d66-16e45c46bae6', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF128GVY/ 443167113 Kevin White, UChicago 159e4b761bef5cc4fdda550ecf34d11c https://www.encodeproject.org/files/ENCFF659AIN/@@download/ENCFF659AIN.bam released s3://encode-public/2015/08/05/9c27d554-cf5a-4ab4-af2e-753c4e95ce21/ENCFF659AIN.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF894BPH bigWig bigWig signal of unique reads dm3 ENCSR118DLX Control ChIP-seq /fly-donors/ENCDO824ZEP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768719/'], '@type': ['Target', 'Item'], 'name': 'luna-dmelanogaster', 'label': 'luna', '@id': '/targets/luna-dmelanogaster/', 'title': 'luna (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '19373b7d-4194-4f0f-9d66-16e45c46bae6', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF659AIN/ 15224875 Kevin White, UChicago d8a59a95d83df39ba69e84d7bc47b7e5 https://www.encodeproject.org/files/ENCFF894BPH/@@download/ENCFF894BPH.bigWig released s3://encode-public/2015/10/07/a369f53c-f55b-4614-96b1-39ae1cd6b496/ENCFF894BPH.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF946PZF bigWig bigWig read-depth normalized signal dm3 ENCSR118DLX Control ChIP-seq /fly-donors/ENCDO824ZEP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768719/'], '@type': ['Target', 'Item'], 'name': 'luna-dmelanogaster', 'label': 'luna', '@id': '/targets/luna-dmelanogaster/', 'title': 'luna (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '19373b7d-4194-4f0f-9d66-16e45c46bae6', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF659AIN/ 15239590 Kevin White, UChicago 1db8a2109f06e99dd5c6f07e8c041490 https://www.encodeproject.org/files/ENCFF946PZF/@@download/ENCFF946PZF.bigWig released s3://encode-public/2015/10/07/daa7f903-683a-4efc-ad35-7d0c3d9b749a/ENCFF946PZF.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF304BLR bam bam alignments dm6 ENCSR118DLX Control ChIP-seq /fly-donors/ENCDO824ZEP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768719/'], '@type': ['Target', 'Item'], 'name': 'luna-dmelanogaster', 'label': 'luna', '@id': '/targets/luna-dmelanogaster/', 'title': 'luna (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '19373b7d-4194-4f0f-9d66-16e45c46bae6', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF128GVY/ 441801585 Kevin White, UChicago db40c68aa621bf3a4cf155b7eb303f02 https://www.encodeproject.org/files/ENCFF304BLR/@@download/ENCFF304BLR.bam released s3://encode-public/2016/04/21/41103608-7ee1-450f-9f18-a3ac55f1a290/ENCFF304BLR.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF332KCW bigWig bigWig read-depth normalized signal dm6 ENCSR118DLX Control ChIP-seq /fly-donors/ENCDO824ZEP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768719/'], '@type': ['Target', 'Item'], 'name': 'luna-dmelanogaster', 'label': 'luna', '@id': '/targets/luna-dmelanogaster/', 'title': 'luna (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '19373b7d-4194-4f0f-9d66-16e45c46bae6', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF304BLR/ 17346797 Kevin White, UChicago 3962dc31d729c3fd50b943a5ee6d29c9 https://www.encodeproject.org/files/ENCFF332KCW/@@download/ENCFF332KCW.bigWig released s3://encode-public/2016/06/21/7c603539-5441-4f55-a928-d426f8956a52/ENCFF332KCW.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF692QJD bigWig bigWig signal of unique reads dm6 ENCSR118DLX Control ChIP-seq /fly-donors/ENCDO824ZEP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768719/'], '@type': ['Target', 'Item'], 'name': 'luna-dmelanogaster', 'label': 'luna', '@id': '/targets/luna-dmelanogaster/', 'title': 'luna (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '19373b7d-4194-4f0f-9d66-16e45c46bae6', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF304BLR/ 17324620 Kevin White, UChicago 9e139d8a8565b2b49601bf728d02b209 https://www.encodeproject.org/files/ENCFF692QJD/@@download/ENCFF692QJD.bigWig released s3://encode-public/2016/06/21/03eb4bcc-ba06-4319-b243-e5edb063ad8c/ENCFF692QJD.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF715ILQ fastq fastq reads ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 119560644 Michael Snyder, Stanford a0f1654ee6ed9e5ef630f2e68c20d7e7 https://www.encodeproject.org/files/ENCFF715ILQ/@@download/ENCFF715ILQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ad8e3e4b-d6d4-413d-b663-d37e34546a77/ENCFF715ILQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF233SIK fastq fastq reads ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 79710335 Michael Snyder, Stanford 038826208611c3fbde7ed29286a22b16 https://www.encodeproject.org/files/ENCFF233SIK/@@download/ENCFF233SIK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1f57aa7a-2ffb-4c6e-96ca-2a97f7e0c5a9/ENCFF233SIK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF844BLA bam bam alignments ce10 ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF715ILQ/, /files/ENCFF233SIK/, /files/ENCFF987UMF/ 244684103 Kevin White, UChicago 72d88cf5368acc9fdcc753f2090345f3 https://www.encodeproject.org/files/ENCFF844BLA/@@download/ENCFF844BLA.bam released s3://encode-public/2016/10/18/dd1029dd-77dc-46e2-997f-25efc89a54d1/ENCFF844BLA.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF778ALA bam bam alignments ce11 ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF715ILQ/, /files/ENCFF233SIK/, /files/ENCFF586MOL/ 244906936 Kevin White, UChicago fba808e22b812af73aa9df24a3b4af39 https://www.encodeproject.org/files/ENCFF778ALA/@@download/ENCFF778ALA.bam released s3://encode-public/2016/10/18/175f7cb4-6f8b-4998-a3d9-c2d4380cb78b/ENCFF778ALA.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF226PJA bigWig bigWig signal of unique reads ce10 ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF844BLA/ 9953473 Kevin White, UChicago da88af48f785418c3124dc85e0e7b725 https://www.encodeproject.org/files/ENCFF226PJA/@@download/ENCFF226PJA.bigWig released s3://encode-public/2016/10/20/23867bf7-8b93-4a76-9bac-8b39d9426851/ENCFF226PJA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF913HLJ bigWig bigWig read-depth normalized signal ce10 ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF844BLA/ 9957189 Kevin White, UChicago 1511e75170a43b070da4039836cb3433 https://www.encodeproject.org/files/ENCFF913HLJ/@@download/ENCFF913HLJ.bigWig released s3://encode-public/2016/10/20/6804e661-b459-455c-b675-3030be492643/ENCFF913HLJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF471MQZ bigWig bigWig signal of unique reads ce11 ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF778ALA/ 9951815 Kevin White, UChicago 60531e01e12752cda49ff5c6c70eb245 https://www.encodeproject.org/files/ENCFF471MQZ/@@download/ENCFF471MQZ.bigWig released s3://encode-public/2016/10/20/2e8edc36-c931-4bd0-9c06-636995d26d76/ENCFF471MQZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF476IJC bigWig bigWig read-depth normalized signal ce11 ENCSR357SUE Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF778ALA/ 9955302 Kevin White, UChicago a70f4acfa3c6e638827964b4a49b97d5 https://www.encodeproject.org/files/ENCFF476IJC/@@download/ENCFF476IJC.bigWig released s3://encode-public/2016/10/20/76662045-433a-426b-95a6-6e50a50c63fa/ENCFF476IJC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF043QAU fastq fastq reads ENCSR611YZN Control ChIP-seq /fly-donors/ENCDO686MES/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768677/'], '@type': ['Target', 'Item'], 'name': 'p53-dmelanogaster', 'label': 'p53', '@id': '/targets/p53-dmelanogaster/', 'title': 'p53 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4163a19e-ac89-418c-a8cc-6bdf98a43dbc', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 606170297 Kevin White, UChicago a52235a55e7067526560d6fe390703b1 https://www.encodeproject.org/files/ENCFF043QAU/@@download/ENCFF043QAU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/ba538ee5-62d0-40d8-95be-67c9ab995408/ENCFF043QAU.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF458QKP bam bam alignments dm3 ENCSR611YZN Control ChIP-seq /fly-donors/ENCDO686MES/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768677/'], '@type': ['Target', 'Item'], 'name': 'p53-dmelanogaster', 'label': 'p53', '@id': '/targets/p53-dmelanogaster/', 'title': 'p53 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4163a19e-ac89-418c-a8cc-6bdf98a43dbc', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF043QAU/ 899611455 Kevin White, UChicago 1e1d041c8a26e30c2d13a5e3fbd00be3 https://www.encodeproject.org/files/ENCFF458QKP/@@download/ENCFF458QKP.bam released s3://encode-public/2015/08/05/374e3910-fb49-4e0b-8263-104511d5f7b2/ENCFF458QKP.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF181DDJ bigWig bigWig read-depth normalized signal dm3 ENCSR611YZN Control ChIP-seq /fly-donors/ENCDO686MES/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768677/'], '@type': ['Target', 'Item'], 'name': 'p53-dmelanogaster', 'label': 'p53', '@id': '/targets/p53-dmelanogaster/', 'title': 'p53 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4163a19e-ac89-418c-a8cc-6bdf98a43dbc', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF458QKP/ 15357191 Kevin White, UChicago 74c88ddb7788d132fd35ccecf78d7eb0 https://www.encodeproject.org/files/ENCFF181DDJ/@@download/ENCFF181DDJ.bigWig released s3://encode-public/2015/10/07/07fb9183-4dc2-4ce0-8eaf-a2c8032765c0/ENCFF181DDJ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF562GRW bigWig bigWig signal of unique reads dm3 ENCSR611YZN Control ChIP-seq /fly-donors/ENCDO686MES/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768677/'], '@type': ['Target', 'Item'], 'name': 'p53-dmelanogaster', 'label': 'p53', '@id': '/targets/p53-dmelanogaster/', 'title': 'p53 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4163a19e-ac89-418c-a8cc-6bdf98a43dbc', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF458QKP/ 15344541 Kevin White, UChicago 62bf3e4cfc75db9e472c580bd9e2778d https://www.encodeproject.org/files/ENCFF562GRW/@@download/ENCFF562GRW.bigWig released s3://encode-public/2015/10/07/55cab9f0-f9d2-4245-a45c-7576221bbb13/ENCFF562GRW.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF936BVH bam bam alignments dm6 ENCSR611YZN Control ChIP-seq /fly-donors/ENCDO686MES/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768677/'], '@type': ['Target', 'Item'], 'name': 'p53-dmelanogaster', 'label': 'p53', '@id': '/targets/p53-dmelanogaster/', 'title': 'p53 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4163a19e-ac89-418c-a8cc-6bdf98a43dbc', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF043QAU/ 896628827 Kevin White, UChicago 51d931e8b82d56e20a618449defe6c45 https://www.encodeproject.org/files/ENCFF936BVH/@@download/ENCFF936BVH.bam released s3://encode-public/2016/04/22/6068484f-a4dc-4495-ae7d-3dbe75a2b591/ENCFF936BVH.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF639JZT bigWig bigWig signal of unique reads dm6 ENCSR611YZN Control ChIP-seq /fly-donors/ENCDO686MES/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768677/'], '@type': ['Target', 'Item'], 'name': 'p53-dmelanogaster', 'label': 'p53', '@id': '/targets/p53-dmelanogaster/', 'title': 'p53 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4163a19e-ac89-418c-a8cc-6bdf98a43dbc', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF936BVH/ 17418503 Kevin White, UChicago 47ebf1ef9434c4933779dd7793f58f9a https://www.encodeproject.org/files/ENCFF639JZT/@@download/ENCFF639JZT.bigWig released s3://encode-public/2016/06/20/a98c3961-0f49-4946-9804-42e2d1d8c46c/ENCFF639JZT.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF903HRL bigWig bigWig read-depth normalized signal dm6 ENCSR611YZN Control ChIP-seq /fly-donors/ENCDO686MES/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768677/'], '@type': ['Target', 'Item'], 'name': 'p53-dmelanogaster', 'label': 'p53', '@id': '/targets/p53-dmelanogaster/', 'title': 'p53 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4163a19e-ac89-418c-a8cc-6bdf98a43dbc', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF936BVH/ 17443553 Kevin White, UChicago 839eeb17b20a8fb860979463ae1fb425 https://www.encodeproject.org/files/ENCFF903HRL/@@download/ENCFF903HRL.bigWig released s3://encode-public/2016/06/20/94138837-2549-41fc-9081-ec01888f145e/ENCFF903HRL.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF736KOS fastq fastq reads ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 178827653 Michael Snyder, Stanford dad4ab74c65163928b69face1bb04815 https://www.encodeproject.org/files/ENCFF736KOS/@@download/ENCFF736KOS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0878a623-3af9-4c24-a1e7-1f8b987f1340/ENCFF736KOS.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF818ADU fastq fastq reads ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 182941474 Michael Snyder, Stanford 0b900a20ac08b7515a08c1f21b1b995a https://www.encodeproject.org/files/ENCFF818ADU/@@download/ENCFF818ADU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1e3adbb0-3b3a-4fea-95db-c6ed23814498/ENCFF818ADU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF991UFA bam bam alignments ce10 ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF736KOS/, /files/ENCFF818ADU/, /files/ENCFF987UMF/ 392313658 Kevin White, UChicago 90c074cab432ee8654b0bb85017ffba6 https://www.encodeproject.org/files/ENCFF991UFA/@@download/ENCFF991UFA.bam released s3://encode-public/2016/10/18/3ab00bc4-05af-4be0-b4ff-1b4c964cecc8/ENCFF991UFA.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF323VHK bam bam alignments ce11 ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF736KOS/, /files/ENCFF818ADU/, /files/ENCFF586MOL/ 392601325 Kevin White, UChicago 8541e102ab63802ad66f0532e7d38f8c https://www.encodeproject.org/files/ENCFF323VHK/@@download/ENCFF323VHK.bam released s3://encode-public/2016/10/19/d60325d7-5a5b-48d6-9f7c-5ca41d28457a/ENCFF323VHK.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF433RPX bigWig bigWig signal of unique reads ce10 ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF991UFA/ 9965888 Kevin White, UChicago 5b5dc6acef07d295241bac895d9a0816 https://www.encodeproject.org/files/ENCFF433RPX/@@download/ENCFF433RPX.bigWig released s3://encode-public/2016/10/20/f466acf0-ca21-4ed6-8396-a9365629767d/ENCFF433RPX.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF853FJW bigWig bigWig read-depth normalized signal ce10 ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF991UFA/ 9973671 Kevin White, UChicago 32078b3248a6391f49835169378dc925 https://www.encodeproject.org/files/ENCFF853FJW/@@download/ENCFF853FJW.bigWig released s3://encode-public/2016/10/20/185b3e8a-a1d4-4a45-abe5-10f4d84bf1c8/ENCFF853FJW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF118LUZ bigWig bigWig signal of unique reads ce11 ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF323VHK/ 9963359 Kevin White, UChicago 0732254ba8c40cbc44e04e2d78a786c9 https://www.encodeproject.org/files/ENCFF118LUZ/@@download/ENCFF118LUZ.bigWig released s3://encode-public/2016/10/21/3af00e57-b748-4da8-aa3c-97d636a18140/ENCFF118LUZ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF276HGT bigWig bigWig read-depth normalized signal ce11 ENCSR565HLF Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF323VHK/ 9973049 Kevin White, UChicago 21eb19e8f551205d0dea1eef444abbc9 https://www.encodeproject.org/files/ENCFF276HGT/@@download/ENCFF276HGT.bigWig released s3://encode-public/2016/10/21/21126de6-a3df-4381-b651-9bf937b24a09/ENCFF276HGT.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF081ZVF fastq fastq reads ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 254133573 Michael Snyder, Stanford 650bd4fab09ff1c4ed3f3917f670be4e https://www.encodeproject.org/files/ENCFF081ZVF/@@download/ENCFF081ZVF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bb1bdb2c-e7a3-4912-93c5-9c6df3444616/ENCFF081ZVF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF290UBH fastq fastq reads ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 228171639 Michael Snyder, Stanford 522ea84adb589d3bd02bbf74ac956cc4 https://www.encodeproject.org/files/ENCFF290UBH/@@download/ENCFF290UBH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e416bd3b-69c6-48f2-945a-26a1ca730675/ENCFF290UBH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF276FKE bam bam alignments ce10 ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF290UBH/, /files/ENCFF081ZVF/, /files/ENCFF987UMF/ 582297981 Kevin White, UChicago 66894f1066938714f47eac8ca452eeda https://www.encodeproject.org/files/ENCFF276FKE/@@download/ENCFF276FKE.bam released s3://encode-public/2016/10/18/b13e28d5-7680-4f33-b24b-7ab18482afcf/ENCFF276FKE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF971SHA bam bam alignments ce11 ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF290UBH/, /files/ENCFF081ZVF/, /files/ENCFF586MOL/ 582800123 Kevin White, UChicago 3133ca6e8793f8ab759f1f36d0e69403 https://www.encodeproject.org/files/ENCFF971SHA/@@download/ENCFF971SHA.bam released s3://encode-public/2016/10/18/3760412b-4a21-4bcb-b853-7b816b2316c7/ENCFF971SHA.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF712JZQ bigWig bigWig signal of unique reads ce10 ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF276FKE/ 10012387 Kevin White, UChicago 00c756a64cb1e622b3cfbc102a1f80c1 https://www.encodeproject.org/files/ENCFF712JZQ/@@download/ENCFF712JZQ.bigWig released s3://encode-public/2016/10/20/5eb52215-7700-4b2f-831b-decb1921e737/ENCFF712JZQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF955WAD bigWig bigWig read-depth normalized signal ce10 ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF276FKE/ 10007023 Kevin White, UChicago 7d3d7a75bb3ef9f101175af49731c6d6 https://www.encodeproject.org/files/ENCFF955WAD/@@download/ENCFF955WAD.bigWig released s3://encode-public/2016/10/20/c4253ff2-d546-4e4e-9462-66d9686d286d/ENCFF955WAD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF057WEG bigWig bigWig read-depth normalized signal ce11 ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF971SHA/ 9997567 Kevin White, UChicago c0d08325541c736795b68c8db6278997 https://www.encodeproject.org/files/ENCFF057WEG/@@download/ENCFF057WEG.bigWig released s3://encode-public/2016/10/21/7669ae52-eab0-483c-8f23-0ac47c6d3380/ENCFF057WEG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF558FKI bigWig bigWig signal of unique reads ce11 ENCSR224FXO Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF971SHA/ 10008320 Kevin White, UChicago 60349bb25040b52e2c5d0c918c082a66 https://www.encodeproject.org/files/ENCFF558FKI/@@download/ENCFF558FKI.bigWig released s3://encode-public/2016/10/21/48ace4b8-e5ea-4b50-9785-12778ce991cf/ENCFF558FKI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF238TIR fastq fastq reads ENCSR596CGO Control ChIP-seq /fly-donors/ENCDO204VAU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40826/'], '@type': ['Target', 'Item'], 'name': 'pb-dmelanogaster', 'label': 'pb', '@id': '/targets/pb-dmelanogaster/', 'title': 'pb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ac49eb6-7c92-4301-8b66-7385d470e051', 'status': 'released'} dm3 3R 2468707 2572309 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 871695753 Kevin White, UChicago 7629a7c202e837536cbc252945c26875 https://www.encodeproject.org/files/ENCFF238TIR/@@download/ENCFF238TIR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/46e24feb-d937-485b-ae65-10ceb9b70cc1/ENCFF238TIR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF898ZEO bam bam alignments dm3 ENCSR596CGO Control ChIP-seq /fly-donors/ENCDO204VAU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40826/'], '@type': ['Target', 'Item'], 'name': 'pb-dmelanogaster', 'label': 'pb', '@id': '/targets/pb-dmelanogaster/', 'title': 'pb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ac49eb6-7c92-4301-8b66-7385d470e051', 'status': 'released'} dm3 3R 2468707 2572309 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF238TIR/ 1281864770 Kevin White, UChicago 0838fa13abe755601dbeec2ab969d54b https://www.encodeproject.org/files/ENCFF898ZEO/@@download/ENCFF898ZEO.bam released s3://encode-public/2015/08/03/7b3fba4f-b48b-4209-9d80-b25368896452/ENCFF898ZEO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF944CCR bigWig bigWig read-depth normalized signal dm3 ENCSR596CGO Control ChIP-seq /fly-donors/ENCDO204VAU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40826/'], '@type': ['Target', 'Item'], 'name': 'pb-dmelanogaster', 'label': 'pb', '@id': '/targets/pb-dmelanogaster/', 'title': 'pb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ac49eb6-7c92-4301-8b66-7385d470e051', 'status': 'released'} dm3 3R 2468707 2572309 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF898ZEO/ 15463610 Kevin White, UChicago 98c750778be58f9f94e9430d33f2d3ee https://www.encodeproject.org/files/ENCFF944CCR/@@download/ENCFF944CCR.bigWig released s3://encode-public/2015/10/06/16cf2c9c-1d41-477e-87d8-9eb8b946ba8a/ENCFF944CCR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF553OVN bigWig bigWig signal of unique reads dm3 ENCSR596CGO Control ChIP-seq /fly-donors/ENCDO204VAU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40826/'], '@type': ['Target', 'Item'], 'name': 'pb-dmelanogaster', 'label': 'pb', '@id': '/targets/pb-dmelanogaster/', 'title': 'pb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ac49eb6-7c92-4301-8b66-7385d470e051', 'status': 'released'} dm3 3R 2468707 2572309 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF898ZEO/ 15432662 Kevin White, UChicago 861fba987a6b344a829b5e9df09231f7 https://www.encodeproject.org/files/ENCFF553OVN/@@download/ENCFF553OVN.bigWig released s3://encode-public/2015/10/06/2659b7cc-e248-4247-bfa5-10cd6b129852/ENCFF553OVN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF380HZI bam bam alignments dm6 ENCSR596CGO Control ChIP-seq /fly-donors/ENCDO204VAU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40826/'], '@type': ['Target', 'Item'], 'name': 'pb-dmelanogaster', 'label': 'pb', '@id': '/targets/pb-dmelanogaster/', 'title': 'pb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ac49eb6-7c92-4301-8b66-7385d470e051', 'status': 'released'} dm3 3R 2468707 2572309 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF238TIR/ 1276021155 Kevin White, UChicago 51e62384d6d26361476e430801fd3e55 https://www.encodeproject.org/files/ENCFF380HZI/@@download/ENCFF380HZI.bam released s3://encode-public/2016/04/22/db2446ac-9a01-4fe6-8a90-0fa70f85c81f/ENCFF380HZI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF688NXM bigWig bigWig read-depth normalized signal dm6 ENCSR596CGO Control ChIP-seq /fly-donors/ENCDO204VAU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40826/'], '@type': ['Target', 'Item'], 'name': 'pb-dmelanogaster', 'label': 'pb', '@id': '/targets/pb-dmelanogaster/', 'title': 'pb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ac49eb6-7c92-4301-8b66-7385d470e051', 'status': 'released'} dm3 3R 2468707 2572309 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF380HZI/ 17553949 Kevin White, UChicago 5c6a7345fa125749917afa3e54737880 https://www.encodeproject.org/files/ENCFF688NXM/@@download/ENCFF688NXM.bigWig released s3://encode-public/2016/06/21/8e4998e8-40ef-407a-a7c2-19fafd0fef67/ENCFF688NXM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF062NSZ bigWig bigWig signal of unique reads dm6 ENCSR596CGO Control ChIP-seq /fly-donors/ENCDO204VAU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40826/'], '@type': ['Target', 'Item'], 'name': 'pb-dmelanogaster', 'label': 'pb', '@id': '/targets/pb-dmelanogaster/', 'title': 'pb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ac49eb6-7c92-4301-8b66-7385d470e051', 'status': 'released'} dm3 3R 2468707 2572309 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF380HZI/ 17490764 Kevin White, UChicago 2290b492a2ec57f6c6c5e1cce17e7c5b https://www.encodeproject.org/files/ENCFF062NSZ/@@download/ENCFF062NSZ.bigWig released s3://encode-public/2016/06/21/226e3be4-6608-4ebf-8d13-719e1ec0831e/ENCFF062NSZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF741VKO fastq fastq reads ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 522907238 Bradley Bernstein, Broad e780e0e6b53b1d1c31ea5ba5bb2e8506 SRA:SRR16812929 https://www.encodeproject.org/files/ENCFF741VKO/@@download/ENCFF741VKO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/b91d52a2-f446-4a89-a095-a0afb7d92162/ENCFF741VKO.fastq.gz ENCFF874SEE fastq fastq reads ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 511499967 Bradley Bernstein, Broad 9cba082028583048f2c7a7043b0da69b SRA:SRR16812930 https://www.encodeproject.org/files/ENCFF874SEE/@@download/ENCFF874SEE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/5ea7a7ca-d86e-4415-b57e-a23785c71a59/ENCFF874SEE.fastq.gz ENCFF639EMU fastq fastq reads ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 520696141 Bradley Bernstein, Broad c37f0ec7ca32649ad686bfde9646e75a SRA:SRR16812931 https://www.encodeproject.org/files/ENCFF639EMU/@@download/ENCFF639EMU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/3f55b474-1ea6-4e5e-9a44-add104d07f86/ENCFF639EMU.fastq.gz ENCFF520OYN fastq fastq reads ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 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https://www.encodeproject.org/files/ENCFF171UPQ/@@download/ENCFF171UPQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a0bbe80a-8071-4b8f-874b-acf3b8764294/ENCFF171UPQ.fastq.gz ENCFF729XEZ fastq fastq reads ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 355058768 Bradley Bernstein, Broad ac222e26366a48f62df3169e927aa756 SRA:SRR16812927 https://www.encodeproject.org/files/ENCFF729XEZ/@@download/ENCFF729XEZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/1808dceb-0e61-40ea-81e8-76257e35709b/ENCFF729XEZ.fastq.gz ENCFF281UEH fastq fastq reads ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 347664282 Bradley Bernstein, Broad 166d423a97efc1bb10914311b0deeebe SRA:SRR16812928 https://www.encodeproject.org/files/ENCFF281UEH/@@download/ENCFF281UEH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/0ea45825-2392-4dec-9069-a7c9e3d46bca/ENCFF281UEH.fastq.gz ENCFF099KHZ bam bam unfiltered alignments GRCh38 ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF729XEZ/, /files/ENCFF488BJV/, /files/ENCFF171UPQ/, /files/ENCFF558VYH/, /files/ENCFF741VKO/, /files/ENCFF600HBZ/, /files/ENCFF520OYN/, /files/ENCFF535ALQ/, /files/ENCFF874SEE/, /files/ENCFF483EJY/, /files/ENCFF639EMU/, /files/ENCFF281UEH/, /files/ENCFF110MCL/ 4284885997 ENCODE Processing Pipeline ae81b1455dd96189f07a4562e34b8c63 https://www.encodeproject.org/files/ENCFF099KHZ/@@download/ENCFF099KHZ.bam released s3://encode-public/2021/09/15/d70f8011-65cd-4707-af36-6b2c369dda30/ENCFF099KHZ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF506EDD bam bam alignments GRCh38 ENCSR564VBC Control ChIP-seq /human-donors/ENCDO997SGX/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF729XEZ/, /files/ENCFF488BJV/, /files/ENCFF171UPQ/, /files/ENCFF558VYH/, /files/ENCFF741VKO/, /files/ENCFF600HBZ/, /files/ENCFF520OYN/, /files/ENCFF535ALQ/, /files/ENCFF874SEE/, /files/ENCFF483EJY/, /files/ENCFF639EMU/, /files/ENCFF281UEH/, /files/ENCFF110MCL/ 3623964171 ENCODE Processing Pipeline 3408284cbb7e44a989cd5e98620832ba https://www.encodeproject.org/files/ENCFF506EDD/@@download/ENCFF506EDD.bam released s3://encode-public/2021/09/15/9f4a5d48-76e4-4ab4-b00d-d3bbe3db22a9/ENCFF506EDD.bam ENCODE4 v1.8.0 GRCh38 released ENCFF342UEL fastq fastq reads ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 105773784 Michael Snyder, Stanford 3092ae60c4520c0da41b732bac4319ba https://www.encodeproject.org/files/ENCFF342UEL/@@download/ENCFF342UEL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/66aabb93-4234-42a8-9edf-d2296b6b63c6/ENCFF342UEL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF695EBC fastq fastq reads ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 137405822 Michael Snyder, Stanford 26de480baaa6f51e7754e004887f565e https://www.encodeproject.org/files/ENCFF695EBC/@@download/ENCFF695EBC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f16bb0b7-a6f7-4258-bed2-6da44e6a00b7/ENCFF695EBC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF581ILF bam bam alignments ce10 ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF695EBC/, /files/ENCFF987UMF/, /files/ENCFF342UEL/ 322924825 Kevin White, UChicago 05a87b51d2e268575d0e0604f3b30f18 https://www.encodeproject.org/files/ENCFF581ILF/@@download/ENCFF581ILF.bam released s3://encode-public/2016/10/18/f327976f-87be-4029-b8bf-28a2dbaf83f1/ENCFF581ILF.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF843QUC bam bam alignments ce11 ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF695EBC/, /files/ENCFF586MOL/, /files/ENCFF342UEL/ 323311511 Kevin White, UChicago a20c547a63038b83d0ecbfcb6a5da25e https://www.encodeproject.org/files/ENCFF843QUC/@@download/ENCFF843QUC.bam released s3://encode-public/2016/10/18/d9d31044-4f31-40dc-8b4c-423f75a0f401/ENCFF843QUC.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF955MHF bigWig bigWig signal of unique reads ce10 ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF581ILF/ 10055952 Kevin White, UChicago f1fc8d4bb413791ff6f4898009103744 https://www.encodeproject.org/files/ENCFF955MHF/@@download/ENCFF955MHF.bigWig released s3://encode-public/2016/10/20/e6b25717-6f0b-42ec-9a87-801c15a3789e/ENCFF955MHF.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF472XJJ bigWig bigWig read-depth normalized signal ce10 ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF581ILF/ 9989451 Kevin White, UChicago e6136c12bc794c7e0560bf41150318a8 https://www.encodeproject.org/files/ENCFF472XJJ/@@download/ENCFF472XJJ.bigWig released s3://encode-public/2016/10/20/76f9569b-1541-4086-91eb-34acaf94f808/ENCFF472XJJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF853UZH bigWig bigWig read-depth normalized signal ce11 ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF843QUC/ 9987344 Kevin White, UChicago 591b740f561d16b982d0111a44fcb8bc https://www.encodeproject.org/files/ENCFF853UZH/@@download/ENCFF853UZH.bigWig released s3://encode-public/2016/10/20/a2c49edc-f082-4039-880d-3949fb569d93/ENCFF853UZH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF351LOX bigWig bigWig signal of unique reads ce11 ENCSR489KVE Control ChIP-seq /worm-donors/ENCDO450VTN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172889/'], '@type': ['Target', 'Item'], 'name': 'aha-1-celegans', 'label': 'aha-1', '@id': '/targets/aha-1-celegans/', 'title': 'aha-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd7b4e045-526b-42b0-8ef4-56d4eb4c8382', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF843QUC/ 10049310 Kevin White, UChicago 1bdef8094e58f0eaef04fde40993b650 https://www.encodeproject.org/files/ENCFF351LOX/@@download/ENCFF351LOX.bigWig released s3://encode-public/2016/10/20/163ece88-4ff4-4d2e-be13-94a79a964cd9/ENCFF351LOX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF607ZUJ fastq fastq reads ENCSR998VHS Control ChIP-seq /fly-donors/ENCDO399ZCA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42743/'], '@type': ['Target', 'Item'], 'name': 'cnc-dmelanogaster', 'label': 'cnc', '@id': '/targets/cnc-dmelanogaster/', 'title': 'cnc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086dc776-a09a-47fe-9253-5dd3c8540221', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 225-350 1 1_1 50 single-ended 387003534 Kevin White, UChicago 2f1abd37173547d46f5402399591e199 https://www.encodeproject.org/files/ENCFF607ZUJ/@@download/ENCFF607ZUJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF777WGZ/ released s3://encode-public/2015/07/23/13ff0b4f-194d-460a-9c2d-599947f2993f/ENCFF607ZUJ.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF427ULE bam bam alignments dm3 ENCSR998VHS Control ChIP-seq /fly-donors/ENCDO399ZCA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42743/'], '@type': ['Target', 'Item'], 'name': 'cnc-dmelanogaster', 'label': 'cnc', '@id': '/targets/cnc-dmelanogaster/', 'title': 'cnc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086dc776-a09a-47fe-9253-5dd3c8540221', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 225-350 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF607ZUJ/ 539508829 Kevin White, UChicago 2b1a097d66290d7e3187582aa7c11170 https://www.encodeproject.org/files/ENCFF427ULE/@@download/ENCFF427ULE.bam released s3://encode-public/2015/08/03/ef46d3c3-4657-4f0f-8409-1fb28d62d17c/ENCFF427ULE.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF694DBZ bigWig bigWig signal of unique reads dm3 ENCSR998VHS Control ChIP-seq /fly-donors/ENCDO399ZCA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42743/'], '@type': ['Target', 'Item'], 'name': 'cnc-dmelanogaster', 'label': 'cnc', '@id': '/targets/cnc-dmelanogaster/', 'title': 'cnc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086dc776-a09a-47fe-9253-5dd3c8540221', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 225-350 1 1_1 /files/ENCFF751MMO/ 15134392 Kevin White, UChicago 42a525ceeff7f76ed8623f671830ecfa https://www.encodeproject.org/files/ENCFF694DBZ/@@download/ENCFF694DBZ.bigWig released s3://encode-public/2015/10/06/b6fd8534-7556-46b3-8c1d-a0668b2bdedf/ENCFF694DBZ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF595COA bigWig bigWig read-depth normalized signal dm3 ENCSR998VHS Control ChIP-seq /fly-donors/ENCDO399ZCA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42743/'], '@type': ['Target', 'Item'], 'name': 'cnc-dmelanogaster', 'label': 'cnc', '@id': '/targets/cnc-dmelanogaster/', 'title': 'cnc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086dc776-a09a-47fe-9253-5dd3c8540221', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 225-350 1 1_1 /files/ENCFF751MMO/ 15112343 Kevin White, UChicago 7a3c06b04aaa487ca2a8479fc76222c2 https://www.encodeproject.org/files/ENCFF595COA/@@download/ENCFF595COA.bigWig released s3://encode-public/2015/10/06/bd42ecdc-d1e4-46ee-935f-c1d83453ef74/ENCFF595COA.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF579QMA bam bam alignments dm6 ENCSR998VHS Control ChIP-seq /fly-donors/ENCDO399ZCA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42743/'], '@type': ['Target', 'Item'], 'name': 'cnc-dmelanogaster', 'label': 'cnc', '@id': '/targets/cnc-dmelanogaster/', 'title': 'cnc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086dc776-a09a-47fe-9253-5dd3c8540221', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 225-350 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF607ZUJ/ 536446584 Kevin White, UChicago f10ffe27312a9763285fc55405e30f03 https://www.encodeproject.org/files/ENCFF579QMA/@@download/ENCFF579QMA.bam released s3://encode-public/2016/04/21/fb56cabd-179d-43b0-8280-ccccc5cb5511/ENCFF579QMA.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF787SCG bigWig bigWig read-depth normalized signal dm6 ENCSR998VHS Control ChIP-seq /fly-donors/ENCDO399ZCA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42743/'], '@type': ['Target', 'Item'], 'name': 'cnc-dmelanogaster', 'label': 'cnc', '@id': '/targets/cnc-dmelanogaster/', 'title': 'cnc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086dc776-a09a-47fe-9253-5dd3c8540221', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 225-350 1 1_1 /files/ENCFF579QMA/ 17164043 Kevin White, UChicago 67eb8f30eb3ba1f1e31beb16980c01a2 https://www.encodeproject.org/files/ENCFF787SCG/@@download/ENCFF787SCG.bigWig released s3://encode-public/2016/06/20/be6608ae-2d79-4ab2-94f3-9d25ad90a0ee/ENCFF787SCG.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF736NRH bigWig bigWig signal of unique reads dm6 ENCSR998VHS Control ChIP-seq /fly-donors/ENCDO399ZCA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42743/'], '@type': ['Target', 'Item'], 'name': 'cnc-dmelanogaster', 'label': 'cnc', '@id': '/targets/cnc-dmelanogaster/', 'title': 'cnc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '086dc776-a09a-47fe-9253-5dd3c8540221', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 225-350 1 1_1 /files/ENCFF579QMA/ 17199096 Kevin White, UChicago f59ed41e3c2095c8af2e38c027338110 https://www.encodeproject.org/files/ENCFF736NRH/@@download/ENCFF736NRH.bigWig released s3://encode-public/2016/06/21/49643e2d-dc55-4e06-bccf-09dfc99cba19/ENCFF736NRH.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF186PSK fastq fastq reads ENCSR562KLY Control ChIP-seq /fly-donors/ENCDO515RSX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36679/'], '@type': ['Target', 'Item'], 'name': 'CG8089-dmelanogaster', 'label': 'CG8089', '@id': '/targets/CG8089-dmelanogaster/', 'title': 'CG8089 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a35dc739-faea-4a56-8a54-94b9dfc3487f', 'status': 'released'} dm3 2R 11023696 11043669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 805011839 Kevin White, UChicago ffeade0730e14a04ab8ed948cb3aaea6 https://www.encodeproject.org/files/ENCFF186PSK/@@download/ENCFF186PSK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/7b005e20-895d-4684-82c5-70816d6b2af1/ENCFF186PSK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF884GUV bam bam alignments dm3 ENCSR562KLY Control ChIP-seq /fly-donors/ENCDO515RSX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36679/'], '@type': ['Target', 'Item'], 'name': 'CG8089-dmelanogaster', 'label': 'CG8089', '@id': '/targets/CG8089-dmelanogaster/', 'title': 'CG8089 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a35dc739-faea-4a56-8a54-94b9dfc3487f', 'status': 'released'} dm3 2R 11023696 11043669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF186PSK/ 1165639849 Kevin White, UChicago 4fd773cc0fa5e9c7281a40d345e306de https://www.encodeproject.org/files/ENCFF884GUV/@@download/ENCFF884GUV.bam released s3://encode-public/2015/08/03/ced050c5-2740-429c-9c58-450994a8ebe1/ENCFF884GUV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF392XSU bigWig bigWig read-depth normalized signal dm3 ENCSR562KLY Control ChIP-seq /fly-donors/ENCDO515RSX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36679/'], '@type': ['Target', 'Item'], 'name': 'CG8089-dmelanogaster', 'label': 'CG8089', '@id': '/targets/CG8089-dmelanogaster/', 'title': 'CG8089 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a35dc739-faea-4a56-8a54-94b9dfc3487f', 'status': 'released'} dm3 2R 11023696 11043669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF884GUV/ 15391536 Kevin White, UChicago 19351b4df3b48a996e6b5f1496f5afcd https://www.encodeproject.org/files/ENCFF392XSU/@@download/ENCFF392XSU.bigWig released s3://encode-public/2015/10/06/e029c058-d070-41d5-b2bc-e457ab1c59eb/ENCFF392XSU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF969GIH bigWig bigWig signal of unique reads dm3 ENCSR562KLY Control ChIP-seq /fly-donors/ENCDO515RSX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36679/'], '@type': ['Target', 'Item'], 'name': 'CG8089-dmelanogaster', 'label': 'CG8089', '@id': '/targets/CG8089-dmelanogaster/', 'title': 'CG8089 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a35dc739-faea-4a56-8a54-94b9dfc3487f', 'status': 'released'} dm3 2R 11023696 11043669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF884GUV/ 15393253 Kevin White, UChicago a1d16a1954a70a42bec27d05ebf154b9 https://www.encodeproject.org/files/ENCFF969GIH/@@download/ENCFF969GIH.bigWig released s3://encode-public/2015/10/06/7d5d12e6-9175-4dbf-ac3d-0b418a6cf189/ENCFF969GIH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF170YPA bam bam alignments dm6 ENCSR562KLY Control ChIP-seq /fly-donors/ENCDO515RSX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36679/'], '@type': ['Target', 'Item'], 'name': 'CG8089-dmelanogaster', 'label': 'CG8089', '@id': '/targets/CG8089-dmelanogaster/', 'title': 'CG8089 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a35dc739-faea-4a56-8a54-94b9dfc3487f', 'status': 'released'} dm3 2R 11023696 11043669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF186PSK/ 1162214292 Kevin White, UChicago 15dcab663876152573031a142537815b https://www.encodeproject.org/files/ENCFF170YPA/@@download/ENCFF170YPA.bam released s3://encode-public/2016/04/21/b8764ab7-c79e-4875-9b94-7f4622e4c4ff/ENCFF170YPA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF686TZN bigWig bigWig read-depth normalized signal dm6 ENCSR562KLY Control ChIP-seq /fly-donors/ENCDO515RSX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36679/'], '@type': ['Target', 'Item'], 'name': 'CG8089-dmelanogaster', 'label': 'CG8089', '@id': '/targets/CG8089-dmelanogaster/', 'title': 'CG8089 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a35dc739-faea-4a56-8a54-94b9dfc3487f', 'status': 'released'} dm3 2R 11023696 11043669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF170YPA/ 17458242 Kevin White, UChicago 80b5a24586fe43241d2d7bf4cf25a940 https://www.encodeproject.org/files/ENCFF686TZN/@@download/ENCFF686TZN.bigWig released s3://encode-public/2016/06/20/4b6b98a3-adb9-4418-8323-abe425a7cea1/ENCFF686TZN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF370EUQ bigWig bigWig signal of unique reads dm6 ENCSR562KLY Control ChIP-seq /fly-donors/ENCDO515RSX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36679/'], '@type': ['Target', 'Item'], 'name': 'CG8089-dmelanogaster', 'label': 'CG8089', '@id': '/targets/CG8089-dmelanogaster/', 'title': 'CG8089 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a35dc739-faea-4a56-8a54-94b9dfc3487f', 'status': 'released'} dm3 2R 11023696 11043669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF170YPA/ 17462155 Kevin White, UChicago c2b1f739d35f582383cf616e14555939 https://www.encodeproject.org/files/ENCFF370EUQ/@@download/ENCFF370EUQ.bigWig released s3://encode-public/2016/06/20/38e8c3ed-16d4-4059-bd93-8c7cc29c7097/ENCFF370EUQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF592NJW fastq fastq reads ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 101440401 Michael Snyder, Stanford bca50692e9c0f2c26a964f443b2be89c https://www.encodeproject.org/files/ENCFF592NJW/@@download/ENCFF592NJW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/c489b2b3-12a0-4a5b-a581-ba5992b9cd92/ENCFF592NJW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF179FZW fastq fastq reads ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 195040993 Michael Snyder, Stanford 6e24cf014a1e12c5563eaf0920901fad https://www.encodeproject.org/files/ENCFF179FZW/@@download/ENCFF179FZW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/fc20e202-d532-4172-9ac0-546a5ce0765a/ENCFF179FZW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF443OCQ bam bam alignments ce10 ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF592NJW/, /files/ENCFF179FZW/, /files/ENCFF987UMF/ 356202729 Kevin White, UChicago 3e6e6fb6662523aa41153b843d177ff8 https://www.encodeproject.org/files/ENCFF443OCQ/@@download/ENCFF443OCQ.bam released s3://encode-public/2016/10/26/b0aa1047-b680-4787-bdef-804b5ec1da08/ENCFF443OCQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF784AHD bam bam alignments ce11 ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF592NJW/, /files/ENCFF179FZW/, /files/ENCFF586MOL/ 356527155 Kevin White, UChicago 2e3c65f4eebd336030e50c5aed1478e4 https://www.encodeproject.org/files/ENCFF784AHD/@@download/ENCFF784AHD.bam released s3://encode-public/2016/10/26/cf72620a-ece8-4df3-aa9f-567d544c6f03/ENCFF784AHD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF026IQJ bigWig bigWig signal of unique reads ce10 ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF443OCQ/ 10047263 Kevin White, UChicago f692438236c78e5b3258f709e9253081 https://www.encodeproject.org/files/ENCFF026IQJ/@@download/ENCFF026IQJ.bigWig released s3://encode-public/2016/10/26/6aa9d1a2-4575-469a-9938-bb6deaac0e57/ENCFF026IQJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF663GRV bigWig bigWig read-depth normalized signal ce10 ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF443OCQ/ 10041343 Kevin White, UChicago d39fdf4f0fa9d94f7b10bbb7b71cc394 https://www.encodeproject.org/files/ENCFF663GRV/@@download/ENCFF663GRV.bigWig released s3://encode-public/2016/10/26/9fa84afe-b9c7-454e-9f4b-574e4740d9f4/ENCFF663GRV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF092QGK bigWig bigWig read-depth normalized signal ce11 ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF784AHD/ 10038533 Kevin White, UChicago 1063f466302cee896088c45dc6eb65bb https://www.encodeproject.org/files/ENCFF092QGK/@@download/ENCFF092QGK.bigWig released s3://encode-public/2016/10/26/56dd80a7-6cff-4812-9210-7898bec460cf/ENCFF092QGK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF731CSI bigWig bigWig signal of unique reads ce11 ENCSR920XFN Control ChIP-seq /worm-donors/ENCDO939FAK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF784AHD/ 10047189 Kevin White, UChicago bf7031601f12e01480070c1c8f8bc6d4 https://www.encodeproject.org/files/ENCFF731CSI/@@download/ENCFF731CSI.bigWig released s3://encode-public/2016/10/26/6071919e-1816-4538-b710-ed461d4c8470/ENCFF731CSI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF000ZOZ bam bam alignments hg19 ENCSR000EXQ Control ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 32 504000401 Peggy Farnham, USC c1eaf516a3852e408d7d9f61b7491044 https://www.encodeproject.org/files/ENCFF000ZOZ/@@download/ENCFF000ZOZ.bam archived s3://encode-public/2010/12/06/46cf2855-42c6-4b40-9685-22a6f5401937/ENCFF000ZOZ.bam Lab custom hg19 archived low read depth, low read length ENCFF000ZPA fastq fastq reads ENCSR000EXQ Control ChIP-seq /human-donors/ENCDO273AAA/ CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 908981462 Peggy Farnham, USC 1bbb5f43041219e7d8e2cba8ad416d0a https://www.encodeproject.org/files/ENCFF000ZPA/@@download/ENCFF000ZPA.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/ba692d81-fe76-433b-9c24-5077855a2084/ENCFF000ZPA.fastq.gz low read depth, low read length ENCFF000ZPC bigWig bigWig signal hg19 ENCSR000EXQ Control ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 166632682 Peggy Farnham, USC 23e51e19264aef5b2790b2937036f725 https://www.encodeproject.org/files/ENCFF000ZPC/@@download/ENCFF000ZPC.bigWig archived s3://encode-public/2010/12/06/e1042ae6-3641-4cf3-920e-3d42d0661d5e/ENCFF000ZPC.bigWig Lab custom hg19 archived low read depth, low read length ENCFF446XKN bam bam unfiltered alignments GRCh38 ENCSR000EXQ Control ChIP-seq /human-donors/ENCDO273AAA/ CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZPA/ 1050691260 ENCODE Processing Pipeline d8b5d649c402314bfd086b3ede7f01c8 https://www.encodeproject.org/files/ENCFF446XKN/@@download/ENCFF446XKN.bam released s3://encode-public/2016/10/26/1fca2565-85fa-4ef8-9850-e4e982a712d6/ENCFF446XKN.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF962PBI bam bam alignments GRCh38 ENCSR000EXQ Control ChIP-seq /human-donors/ENCDO273AAA/ CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZPA/ 705245140 ENCODE Processing Pipeline f472572ef76819d69c6031eaa44d2cfa https://www.encodeproject.org/files/ENCFF962PBI/@@download/ENCFF962PBI.bam released s3://encode-public/2016/10/26/c0a31ba0-c379-4ed9-9ad7-738db697036e/ENCFF962PBI.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF571MPM bam bam unfiltered alignments hg19 ENCSR000EXQ Control ChIP-seq /human-donors/ENCDO273AAA/ CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZPA/ 1044322768 ENCODE Processing Pipeline 0a2a8fbb7e29ef30e2943eaeea88aa91 https://www.encodeproject.org/files/ENCFF571MPM/@@download/ENCFF571MPM.bam released s3://encode-public/2016/11/13/a21e8ea9-b3f8-43c6-974b-3a1e652dbe5b/ENCFF571MPM.bam ENCODE3 hg19 archived low read depth, low read length ENCFF949HSN bam bam alignments hg19 ENCSR000EXQ Control ChIP-seq /human-donors/ENCDO273AAA/ CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ZPA/ 705362648 ENCODE Processing Pipeline e3a22feb19a7706f610a3900c5e63668 https://www.encodeproject.org/files/ENCFF949HSN/@@download/ENCFF949HSN.bam released s3://encode-public/2016/11/13/ed18acd5-5387-4011-8cc9-3e2b6c8d9f20/ENCFF949HSN.bam ENCODE3 hg19 archived low read depth, low read length ENCFF961PGJ bam bam unfiltered alignments GRCh38 ENCSR000EXQ Control ChIP-seq /human-donors/ENCDO273AAA/ CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPA/, /files/ENCFF110MCL/ 1024837551 ENCODE Processing Pipeline a1dda58c665e84eded655ed2ba4316a4 https://www.encodeproject.org/files/ENCFF961PGJ/@@download/ENCFF961PGJ.bam released s3://encode-public/2020/10/27/e5bc69a9-0053-469a-945c-ec5cb11d1052/ENCFF961PGJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF744KSD bam bam alignments GRCh38 ENCSR000EXQ Control ChIP-seq /human-donors/ENCDO273AAA/ CL:0000765 erythroblast primary cell Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZPA/, /files/ENCFF110MCL/ 773061225 ENCODE Processing Pipeline 14d0a71a91ce82bb568875565f0385ee https://www.encodeproject.org/files/ENCFF744KSD/@@download/ENCFF744KSD.bam released s3://encode-public/2020/10/27/8c24b9fa-a21b-4be6-9a75-b5d74e3c1ac6/ENCFF744KSD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF236UFI fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 548403042 Bradley Bernstein, Broad cc0e97c7b746ae039ac53e7fffcded92 SRA:SRR16811881 https://www.encodeproject.org/files/ENCFF236UFI/@@download/ENCFF236UFI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f2ac5cd6-afae-48b2-bfc4-d02f23660148/ENCFF236UFI.fastq.gz ENCFF908BED fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 562433308 Bradley Bernstein, Broad b9764d4f859596b00e08b80a3aa32113 SRA:SRR16811882 https://www.encodeproject.org/files/ENCFF908BED/@@download/ENCFF908BED.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/aeee5ab2-e6a2-4025-83c7-2f9033e3dbb5/ENCFF908BED.fastq.gz ENCFF936QXM fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 509044432 Bradley Bernstein, Broad 4b66b65c8137332dff5a3d1ab88c4a2e SRA:SRR16811885 https://www.encodeproject.org/files/ENCFF936QXM/@@download/ENCFF936QXM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f64a719a-89f7-4631-be16-60ad9d4872cf/ENCFF936QXM.fastq.gz ENCFF320TSQ fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 556961691 Bradley Bernstein, Broad 887ed23dcf7e3ceb7340b3f8c117f786 SRA:SRR16811883 https://www.encodeproject.org/files/ENCFF320TSQ/@@download/ENCFF320TSQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/79790c6b-1946-4d82-9eff-c3428356c573/ENCFF320TSQ.fastq.gz ENCFF625QOB fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 504482353 Bradley Bernstein, Broad aa0203d19732884290eb6f43759024e7 SRA:SRR16811886 https://www.encodeproject.org/files/ENCFF625QOB/@@download/ENCFF625QOB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/6c5bbf00-9de3-4f1a-821d-68271addde0d/ENCFF625QOB.fastq.gz ENCFF049SLJ fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 511907106 Bradley Bernstein, Broad 15976ac7be683ba10bd5969642d63ebf SRA:SRR16811887 https://www.encodeproject.org/files/ENCFF049SLJ/@@download/ENCFF049SLJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e450f129-7be9-44e0-ae6a-807d221f3ee8/ENCFF049SLJ.fastq.gz ENCFF677FDK fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 514593271 Bradley Bernstein, Broad 1e2596a5f9ced89b931bf8a585312a8a SRA:SRR16811888 https://www.encodeproject.org/files/ENCFF677FDK/@@download/ENCFF677FDK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/3df296de-3c15-4e80-ae76-b62a925a86e3/ENCFF677FDK.fastq.gz ENCFF895WQU fastq fastq reads ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 554316336 Bradley Bernstein, Broad b29df171672e7e05db9f13c7d03973a2 SRA:SRR16811884 https://www.encodeproject.org/files/ENCFF895WQU/@@download/ENCFF895WQU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/0a384c1e-e856-4ade-9ef8-966bd512b407/ENCFF895WQU.fastq.gz ENCFF451VHQ bam bam alignments GRCh38 ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF936QXM/, /files/ENCFF320TSQ/, /files/ENCFF908BED/, /files/ENCFF236UFI/, /files/ENCFF110MCL/, /files/ENCFF625QOB/, /files/ENCFF677FDK/, /files/ENCFF049SLJ/, /files/ENCFF895WQU/ 3420061352 ENCODE Processing Pipeline 9a98cdb61df97f8e6a3e2de837f08a2e https://www.encodeproject.org/files/ENCFF451VHQ/@@download/ENCFF451VHQ.bam released s3://encode-public/2021/09/15/9ef83d22-2f87-4e6f-be2a-3884fd6116a1/ENCFF451VHQ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF366GXS bam bam unfiltered alignments GRCh38 ENCSR427DIF Control ChIP-seq /human-donors/ENCDO448YMQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF936QXM/, /files/ENCFF320TSQ/, /files/ENCFF908BED/, /files/ENCFF236UFI/, /files/ENCFF110MCL/, /files/ENCFF625QOB/, /files/ENCFF677FDK/, /files/ENCFF049SLJ/, /files/ENCFF895WQU/ 4163867115 ENCODE Processing Pipeline 1824fa6451af960b40873b691dfc75e1 https://www.encodeproject.org/files/ENCFF366GXS/@@download/ENCFF366GXS.bam released s3://encode-public/2021/09/15/e8711ecf-8331-4fd7-9225-9706752b2090/ENCFF366GXS.bam ENCODE4 v1.8.0 GRCh38 released ENCFF692CPA fastq fastq reads ENCSR676EOD Control ChIP-seq /fly-donors/ENCDO641WYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33529/'], '@type': ['Target', 'Item'], 'name': 'Mad-dmelanogaster', 'label': 'Mad', '@id': '/targets/Mad-dmelanogaster/', 'title': 'Mad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e2b5bbc-5ea1-4600-b3f4-8c6904bf5826', 'status': 'released'} dm3 2L 3102051 3178723 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 528859188 Kevin White, UChicago a73a8428b0d9cf33c2b553ccdd09715b https://www.encodeproject.org/files/ENCFF692CPA/@@download/ENCFF692CPA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/cee4ce7e-b794-428e-80de-6557f73f5404/ENCFF692CPA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF654XQZ bam bam alignments dm3 ENCSR676EOD Control ChIP-seq /fly-donors/ENCDO641WYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33529/'], '@type': ['Target', 'Item'], 'name': 'Mad-dmelanogaster', 'label': 'Mad', '@id': '/targets/Mad-dmelanogaster/', 'title': 'Mad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e2b5bbc-5ea1-4600-b3f4-8c6904bf5826', 'status': 'released'} dm3 2L 3102051 3178723 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF692CPA/ 792819349 Kevin White, UChicago bbea7810f98447c79e3a055c042d29f6 https://www.encodeproject.org/files/ENCFF654XQZ/@@download/ENCFF654XQZ.bam released s3://encode-public/2015/08/05/87cf0aa5-c216-4c9e-9b75-10c48396b443/ENCFF654XQZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF518UAZ bigWig bigWig signal of unique reads dm3 ENCSR676EOD Control ChIP-seq /fly-donors/ENCDO641WYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33529/'], '@type': ['Target', 'Item'], 'name': 'Mad-dmelanogaster', 'label': 'Mad', '@id': '/targets/Mad-dmelanogaster/', 'title': 'Mad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e2b5bbc-5ea1-4600-b3f4-8c6904bf5826', 'status': 'released'} dm3 2L 3102051 3178723 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654XQZ/ 15366312 Kevin White, UChicago 4f1ab97eed8e0b132cdcc1a80bdba632 https://www.encodeproject.org/files/ENCFF518UAZ/@@download/ENCFF518UAZ.bigWig released s3://encode-public/2015/10/05/b3b4294d-a756-42e9-9053-45335ed5e0ef/ENCFF518UAZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF110HKX bigWig bigWig read-depth normalized signal dm3 ENCSR676EOD Control ChIP-seq /fly-donors/ENCDO641WYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33529/'], '@type': ['Target', 'Item'], 'name': 'Mad-dmelanogaster', 'label': 'Mad', '@id': '/targets/Mad-dmelanogaster/', 'title': 'Mad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e2b5bbc-5ea1-4600-b3f4-8c6904bf5826', 'status': 'released'} dm3 2L 3102051 3178723 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654XQZ/ 15403604 Kevin White, UChicago 244443bf2eb59f8f4f6c455d0dd037fa https://www.encodeproject.org/files/ENCFF110HKX/@@download/ENCFF110HKX.bigWig released s3://encode-public/2015/10/05/6422c575-321a-4f37-bc56-b3b8b36b141a/ENCFF110HKX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF654PDU bam bam alignments dm6 ENCSR676EOD Control ChIP-seq /fly-donors/ENCDO641WYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33529/'], '@type': ['Target', 'Item'], 'name': 'Mad-dmelanogaster', 'label': 'Mad', '@id': '/targets/Mad-dmelanogaster/', 'title': 'Mad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e2b5bbc-5ea1-4600-b3f4-8c6904bf5826', 'status': 'released'} dm3 2L 3102051 3178723 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF692CPA/ 789384663 Kevin White, UChicago 6b502fe791d8dd6b050dc7ca81804021 https://www.encodeproject.org/files/ENCFF654PDU/@@download/ENCFF654PDU.bam released s3://encode-public/2016/04/21/dea9df35-45e9-4ac8-b325-e021ce940cda/ENCFF654PDU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF108CNZ bigWig bigWig signal of unique reads dm6 ENCSR676EOD Control ChIP-seq /fly-donors/ENCDO641WYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33529/'], '@type': ['Target', 'Item'], 'name': 'Mad-dmelanogaster', 'label': 'Mad', '@id': '/targets/Mad-dmelanogaster/', 'title': 'Mad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e2b5bbc-5ea1-4600-b3f4-8c6904bf5826', 'status': 'released'} dm3 2L 3102051 3178723 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654PDU/ 17458134 Kevin White, UChicago ff6ae6d4b23e08e3ddf00a15d0e58e63 https://www.encodeproject.org/files/ENCFF108CNZ/@@download/ENCFF108CNZ.bigWig released s3://encode-public/2016/06/21/23dadf64-2897-4b5b-aadb-88d7fc6e3c3a/ENCFF108CNZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF959JFA bigWig bigWig read-depth normalized signal dm6 ENCSR676EOD Control ChIP-seq /fly-donors/ENCDO641WYM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33529/'], '@type': ['Target', 'Item'], 'name': 'Mad-dmelanogaster', 'label': 'Mad', '@id': '/targets/Mad-dmelanogaster/', 'title': 'Mad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1e2b5bbc-5ea1-4600-b3f4-8c6904bf5826', 'status': 'released'} dm3 2L 3102051 3178723 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654PDU/ 17512896 Kevin White, UChicago 1a1397b2dda4b89633a9baa1408ba5f8 https://www.encodeproject.org/files/ENCFF959JFA/@@download/ENCFF959JFA.bigWig released s3://encode-public/2016/06/21/6a970b21-7ded-4fc1-953d-ab72a77c686c/ENCFF959JFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HHZ bam bam alignments hg19 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF001HIS/ 931689969 John Stamatoyannopoulos, UW 226bc38c6dfe637a9a4eb25e0c8c8551 https://www.encodeproject.org/files/ENCFF001HHZ/@@download/ENCFF001HHZ.bam archived s3://encode-public/2011/06/25/d774bf5c-4d6c-4e73-8f6e-1d3ae69e9469/ENCFF001HHZ.bam Lab custom hg19 archived low read depth, low read length ENCFF001HIJ bigWig bigWig raw signal hg19 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 /files/ENCFF001HHZ/ 180724219 John Stamatoyannopoulos, UW 24b2b51da548dc2c76426c5936f4b7a5 https://www.encodeproject.org/files/ENCFF001HIJ/@@download/ENCFF001HIJ.bigWig archived s3://encode-public/2011/06/25/aad8bc99-5d47-496b-bc7c-11792700b40e/ENCFF001HIJ.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HIS fastq fastq reads ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 1037537555 John Stamatoyannopoulos, UW c4867a6cc9df611da856cd764c5a1272 https://www.encodeproject.org/files/ENCFF001HIS/@@download/ENCFF001HIS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/fb507e3d-dca3-4961-8217-7238f644c7ba/ENCFF001HIS.fastq.gz low read depth, low read length ENCFF259TIP bam bam unfiltered alignments GRCh38 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HIS/ 1235335961 ENCODE Processing Pipeline 8704bbcd9d2cdd050808a17070761894 https://www.encodeproject.org/files/ENCFF259TIP/@@download/ENCFF259TIP.bam released s3://encode-public/2016/08/09/b20ffa89-664e-4395-b91a-e40f9e0cee88/ENCFF259TIP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF504HBF bam bam alignments GRCh38 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HIS/ 851332843 ENCODE Processing Pipeline a7f134e9457c3c7ab96b5ef9e9833862 https://www.encodeproject.org/files/ENCFF504HBF/@@download/ENCFF504HBF.bam released s3://encode-public/2016/08/09/78df012b-22b4-4385-9f6f-928743ee812c/ENCFF504HBF.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF765IHI bam bam unfiltered alignments hg19 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HIS/ 1231834782 ENCODE Processing Pipeline 278676eb3f75989219de820f635c7e6d https://www.encodeproject.org/files/ENCFF765IHI/@@download/ENCFF765IHI.bam released s3://encode-public/2016/11/13/405de005-aa7a-418b-878a-b9aa1af61f17/ENCFF765IHI.bam ENCODE3 hg19 archived low read depth, low read length ENCFF037HKI bam bam alignments hg19 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HIS/ 851726167 ENCODE Processing Pipeline 309f66bde7aa84219ee6dd1444d8fa94 https://www.encodeproject.org/files/ENCFF037HKI/@@download/ENCFF037HKI.bam released s3://encode-public/2016/11/13/9e169d29-977d-47ab-bfab-a1148dd14ec2/ENCFF037HKI.bam ENCODE3 hg19 archived low read depth, low read length ENCFF730QPW bam bam unfiltered alignments GRCh38 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF001HIS/, /files/ENCFF110MCL/ 1215164741 ENCODE Processing Pipeline 1f6e991671ef429ccd1b4f6f6c60d5ec https://www.encodeproject.org/files/ENCFF730QPW/@@download/ENCFF730QPW.bam released s3://encode-public/2020/09/03/3ccfb623-410f-4a50-9929-46b7c0e9ca98/ENCFF730QPW.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF406HGT bam bam alignments GRCh38 ENCSR000DSN Control ChIP-seq /human-donors/ENCDO221AAA/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens Bone morphogenetic protein 4, Activin A, Fibroblast growth factor 2 5 ng/mL, 10 ng/mL, 6 ng/mL 14 day DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF001HIS/, /files/ENCFF110MCL/ 922805003 ENCODE Processing Pipeline a10f4f79e4a69b0406292115767573cd https://www.encodeproject.org/files/ENCFF406HGT/@@download/ENCFF406HGT.bam released s3://encode-public/2020/09/03/ed5853e9-2c9d-483b-bdaf-aa7aab461848/ENCFF406HGT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF435NNX fastq fastq reads ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 169719666 Michael Snyder, Stanford f67f54410bc5b2cb04f9fa46538dc935 https://www.encodeproject.org/files/ENCFF435NNX/@@download/ENCFF435NNX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0c639b8e-bd88-45d2-9d74-54ec53b056b5/ENCFF435NNX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF842CRB fastq fastq reads ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 200081921 Michael Snyder, Stanford e2a3500cf49c351bc51ae582eb4e4225 https://www.encodeproject.org/files/ENCFF842CRB/@@download/ENCFF842CRB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cae485eb-5cb1-413a-baad-e9d79bf5d935/ENCFF842CRB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF938TRU bam bam alignments ce10 ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF842CRB/, /files/ENCFF435NNX/, /files/ENCFF987UMF/ 486798875 Kevin White, UChicago f82bde558d8eef24b689aa8b56421753 https://www.encodeproject.org/files/ENCFF938TRU/@@download/ENCFF938TRU.bam released s3://encode-public/2016/10/18/8e73790b-ff1a-4911-b8a3-18a404268d5c/ENCFF938TRU.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF257IDG bam bam alignments ce11 ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF842CRB/, /files/ENCFF435NNX/, /files/ENCFF586MOL/ 487341267 Kevin White, UChicago 0186df206cc12071ec72dc33d75f6188 https://www.encodeproject.org/files/ENCFF257IDG/@@download/ENCFF257IDG.bam released s3://encode-public/2016/10/18/2dc44d19-48fd-48fb-842b-3b188b892f5a/ENCFF257IDG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF583LHP bigWig bigWig signal of unique reads ce10 ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF938TRU/ 10053433 Kevin White, UChicago 59dcbd0dd9c898a4f3b3f62c10d5bc0d https://www.encodeproject.org/files/ENCFF583LHP/@@download/ENCFF583LHP.bigWig released s3://encode-public/2016/10/20/d8c7f44b-68db-405d-b847-d9fe9257a768/ENCFF583LHP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF479BFB bigWig bigWig read-depth normalized signal ce10 ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF938TRU/ 10096143 Kevin White, UChicago 5e079bfc1b96b2ea6d82c0cbec7a4671 https://www.encodeproject.org/files/ENCFF479BFB/@@download/ENCFF479BFB.bigWig released s3://encode-public/2016/10/20/e35b3597-b15c-4bb9-9421-8d75406efa4f/ENCFF479BFB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF178WQF bigWig bigWig read-depth normalized signal ce11 ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF257IDG/ 10088377 Kevin White, UChicago 3b632bcff985be06288e97814162fac5 https://www.encodeproject.org/files/ENCFF178WQF/@@download/ENCFF178WQF.bigWig released s3://encode-public/2016/10/20/120ab93f-2b9b-4aea-a0a8-288bcba13c5a/ENCFF178WQF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF106SBS bigWig bigWig signal of unique reads ce11 ENCSR114XOX Control ChIP-seq /worm-donors/ENCDO556QBL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF257IDG/ 10053865 Kevin White, UChicago bffa2aa7c76133d54a3e50d058f2f978 https://www.encodeproject.org/files/ENCFF106SBS/@@download/ENCFF106SBS.bigWig released s3://encode-public/2016/10/20/942ac5f9-ff64-4af0-a7a5-57246b12df6d/ENCFF106SBS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF713CKQ fastq fastq reads ENCSR625AVD Control ChIP-seq /fly-donors/ENCDO906AHY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/8674049/'], '@type': ['Target', 'Item'], 'name': 'Pif1A-dmelanogaster', 'label': 'Pif1A', '@id': '/targets/Pif1A-dmelanogaster/', 'title': 'Pif1A (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1d0b1801-ae35-422b-b61f-96db5fa8b1aa', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 567186434 Kevin White, UChicago a38a53e06bf2594cb87322d924378e90 https://www.encodeproject.org/files/ENCFF713CKQ/@@download/ENCFF713CKQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/d97ac78b-918d-4b06-ab65-5ef0a411dc1a/ENCFF713CKQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF381NWC bam bam alignments dm3 ENCSR625AVD Control ChIP-seq /fly-donors/ENCDO906AHY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/8674049/'], '@type': ['Target', 'Item'], 'name': 'Pif1A-dmelanogaster', 'label': 'Pif1A', '@id': '/targets/Pif1A-dmelanogaster/', 'title': 'Pif1A (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1d0b1801-ae35-422b-b61f-96db5fa8b1aa', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF713CKQ/ 832447347 Kevin White, UChicago 26be15c58f5c7e8d39ec1f3941c90e41 https://www.encodeproject.org/files/ENCFF381NWC/@@download/ENCFF381NWC.bam released s3://encode-public/2015/08/05/e7ebf97d-363e-404b-b98f-e6d383d5977d/ENCFF381NWC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF331ESL bigWig bigWig signal of unique reads dm3 ENCSR625AVD Control ChIP-seq /fly-donors/ENCDO906AHY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/8674049/'], '@type': ['Target', 'Item'], 'name': 'Pif1A-dmelanogaster', 'label': 'Pif1A', '@id': '/targets/Pif1A-dmelanogaster/', 'title': 'Pif1A (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1d0b1801-ae35-422b-b61f-96db5fa8b1aa', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF381NWC/ 15168917 Kevin White, UChicago bead1e11600701638e94c5dd47cb8327 https://www.encodeproject.org/files/ENCFF331ESL/@@download/ENCFF331ESL.bigWig released s3://encode-public/2015/10/05/b04c751c-93ce-45b5-ac27-d545c8d23965/ENCFF331ESL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF545JDN bigWig bigWig read-depth normalized signal dm3 ENCSR625AVD Control ChIP-seq /fly-donors/ENCDO906AHY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/8674049/'], '@type': ['Target', 'Item'], 'name': 'Pif1A-dmelanogaster', 'label': 'Pif1A', '@id': '/targets/Pif1A-dmelanogaster/', 'title': 'Pif1A (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1d0b1801-ae35-422b-b61f-96db5fa8b1aa', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF381NWC/ 15169894 Kevin White, UChicago 0614465b6760c578a026c33b59ca6fd0 https://www.encodeproject.org/files/ENCFF545JDN/@@download/ENCFF545JDN.bigWig released s3://encode-public/2015/10/05/723c5684-c249-42fd-abe0-fb82af6f48fc/ENCFF545JDN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF992IIW bam bam alignments dm6 ENCSR625AVD Control ChIP-seq /fly-donors/ENCDO906AHY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/8674049/'], '@type': ['Target', 'Item'], 'name': 'Pif1A-dmelanogaster', 'label': 'Pif1A', '@id': '/targets/Pif1A-dmelanogaster/', 'title': 'Pif1A (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1d0b1801-ae35-422b-b61f-96db5fa8b1aa', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF713CKQ/ 830858977 Kevin White, UChicago 07a9121d91e451e47ebbdf0252e32020 https://www.encodeproject.org/files/ENCFF992IIW/@@download/ENCFF992IIW.bam released s3://encode-public/2016/04/22/d0e5a737-2dba-40e9-a687-548dcb70bd10/ENCFF992IIW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF167LGV bigWig bigWig signal of unique reads dm6 ENCSR625AVD Control ChIP-seq /fly-donors/ENCDO906AHY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/8674049/'], '@type': ['Target', 'Item'], 'name': 'Pif1A-dmelanogaster', 'label': 'Pif1A', '@id': '/targets/Pif1A-dmelanogaster/', 'title': 'Pif1A (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1d0b1801-ae35-422b-b61f-96db5fa8b1aa', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF992IIW/ 17241629 Kevin White, UChicago 40fa70df1bd86b232570454767535119 https://www.encodeproject.org/files/ENCFF167LGV/@@download/ENCFF167LGV.bigWig released s3://encode-public/2016/06/20/992929c5-bbc0-4c26-82cc-93252f7ada3e/ENCFF167LGV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF628WTT bigWig bigWig read-depth normalized signal dm6 ENCSR625AVD Control ChIP-seq /fly-donors/ENCDO906AHY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/8674049/'], '@type': ['Target', 'Item'], 'name': 'Pif1A-dmelanogaster', 'label': 'Pif1A', '@id': '/targets/Pif1A-dmelanogaster/', 'title': 'Pif1A (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '1d0b1801-ae35-422b-b61f-96db5fa8b1aa', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF992IIW/ 17253538 Kevin White, UChicago 06f78803384490f63468ac2416ea8120 https://www.encodeproject.org/files/ENCFF628WTT/@@download/ENCFF628WTT.bigWig released s3://encode-public/2016/06/20/f211fd74-abd1-4427-b120-89db21564bcb/ENCFF628WTT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HAF bam bam alignments hg19 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HAM/ 683793386 John Stamatoyannopoulos, UW 6841559c5ff00fbf211a9b53cc4fc9cb https://www.encodeproject.org/files/ENCFF001HAF/@@download/ENCFF001HAF.bam archived s3://encode-public/2011/06/25/b3724711-f37c-42fd-95c1-319b10cd1626/ENCFF001HAF.bam Lab custom hg19 archived low read depth, low read length ENCFF001HAH bigWig bigWig raw signal hg19 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HAF/ 153731356 John Stamatoyannopoulos, UW 5003643116927d31a72dcaa66991fc5a https://www.encodeproject.org/files/ENCFF001HAH/@@download/ENCFF001HAH.bigWig archived s3://encode-public/2011/06/25/796ec05e-c86c-44ed-95b6-bdd97b4887bf/ENCFF001HAH.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HAM fastq fastq reads ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 721763179 John Stamatoyannopoulos, UW 55d68ef64a0d3d3cf0febe0d3b20a46c https://www.encodeproject.org/files/ENCFF001HAM/@@download/ENCFF001HAM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/0f31665f-1139-4391-8f1a-e0d9294f9531/ENCFF001HAM.fastq.gz low read depth, low read length ENCFF863KCT bam bam unfiltered alignments GRCh38 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HAM/, /files/ENCFF643CGH/ 889387129 ENCODE Processing Pipeline ce4c49ee3c7785061dc382f81bd80d1e https://www.encodeproject.org/files/ENCFF863KCT/@@download/ENCFF863KCT.bam released s3://encode-public/2016/08/09/8ac80cbf-058a-4c03-be02-61eeb78f23b1/ENCFF863KCT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF851MPE bam bam alignments GRCh38 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HAM/, /files/ENCFF643CGH/ 620250363 ENCODE Processing Pipeline 043922e1d98773bd17fbba7aa57881a9 https://www.encodeproject.org/files/ENCFF851MPE/@@download/ENCFF851MPE.bam released s3://encode-public/2016/08/09/63792dc2-e150-470c-8fe9-76c211bf8ed9/ENCFF851MPE.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF168ONS bam bam unfiltered alignments hg19 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HAM/, /files/ENCFF807MUK/ 885528331 ENCODE Processing Pipeline 9b8aa675292b0a2c17c9e7895208f41b https://www.encodeproject.org/files/ENCFF168ONS/@@download/ENCFF168ONS.bam released s3://encode-public/2016/11/13/5e2f1436-3fc9-473d-946a-6fccc2c7500b/ENCFF168ONS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF610PHZ bam bam alignments hg19 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HAM/, /files/ENCFF807MUK/ 620348529 ENCODE Processing Pipeline 0814c9fedeb7a608e88d4079ae18971a https://www.encodeproject.org/files/ENCFF610PHZ/@@download/ENCFF610PHZ.bam released s3://encode-public/2016/11/13/c14e6022-1f9f-4782-9738-7fa71c344911/ENCFF610PHZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF622TCP bam bam unfiltered alignments GRCh38 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAM/ 870766843 ENCODE Processing Pipeline b84584b7d62fc1c8909ea0807ce54444 https://www.encodeproject.org/files/ENCFF622TCP/@@download/ENCFF622TCP.bam released s3://encode-public/2020/09/03/2e6b0ed3-c362-4028-bd7e-dddca57df0b9/ENCFF622TCP.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF634ZKS bam bam alignments GRCh38 ENCSR000DQJ Control ChIP-seq /human-donors/ENCDO000ACR/ EFO:0001099 Caco-2 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HAM/ 679235151 ENCODE Processing Pipeline 5073700b3bdaf22602febadb5884801b https://www.encodeproject.org/files/ENCFF634ZKS/@@download/ENCFF634ZKS.bam released s3://encode-public/2020/09/03/455b5c27-320b-40cd-b7b3-e7b72d594c7b/ENCFF634ZKS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000WKZ bam bam alignments hg19 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WLG/ 227544234 Michael Snyder, Stanford 8e9848f61b6adaef1bc4a486f56b4585 https://www.encodeproject.org/files/ENCFF000WKZ/@@download/ENCFF000WKZ.bam archived s3://encode-public/2012/07/01/f946fa31-01e9-4906-9ad7-9e25d0cffe84/ENCFF000WKZ.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WLA bam bam alignments hg19 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WLM/ 294541103 Michael Snyder, Stanford c91b7c24085151ddf4d0dd3126039504 https://www.encodeproject.org/files/ENCFF000WLA/@@download/ENCFF000WLA.bam archived s3://encode-public/2012/07/01/eeb48bed-afba-4da3-9144-656ed64a774a/ENCFF000WLA.bam Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WLD bigWig bigWig signal hg19 ENCSR000EAT Control ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 316428975 Michael Snyder, Stanford 8650f53385899aa0f88b9be870ed79cf https://www.encodeproject.org/files/ENCFF000WLD/@@download/ENCFF000WLD.bigWig archived s3://encode-public/2012/07/01/399e05c7-ad78-4cc2-90d3-63361471152c/ENCFF000WLD.bigWig Lab custom hg19 archived insufficient read length, insufficient read depth extremely low read depth ENCFF000WLG fastq fastq reads ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 174178615 Michael Snyder, Stanford 22b0ca46f741620eba9fbefee1c5f543 https://www.encodeproject.org/files/ENCFF000WLG/@@download/ENCFF000WLG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/6d17eeff-8956-4813-8163-3bbdf23a8745/ENCFF000WLG.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF000WLM fastq fastq reads ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 230106166 Michael Snyder, Stanford f374a2ace4712236bf0542de6c256c30 https://www.encodeproject.org/files/ENCFF000WLM/@@download/ENCFF000WLM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/f56bfaa9-21d0-49b5-a31b-7f887e7e72be/ENCFF000WLM.fastq.gz insufficient read length, insufficient read depth extremely low read depth ENCFF733AQK bam bam unfiltered alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WLM/, /files/ENCFF643CGH/ 295710841 ENCODE Processing Pipeline 2d3537851529586c13bf6e9a43641d89 https://www.encodeproject.org/files/ENCFF733AQK/@@download/ENCFF733AQK.bam released s3://encode-public/2016/10/26/19b637e3-f9b7-42f5-8ace-d6efd74ce25c/ENCFF733AQK.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF257PUQ bam bam unfiltered alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WLG/ 228743868 ENCODE Processing Pipeline d3dc424c60c1ef5612083a28350fe3d9 https://www.encodeproject.org/files/ENCFF257PUQ/@@download/ENCFF257PUQ.bam released s3://encode-public/2016/10/26/fdba19de-b427-4e5f-8d05-844243e62a92/ENCFF257PUQ.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF460OMS bam bam alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WLM/, /files/ENCFF643CGH/ 193214110 ENCODE Processing Pipeline 9ebef7edcb473b46ab0a3bf813ea93d4 https://www.encodeproject.org/files/ENCFF460OMS/@@download/ENCFF460OMS.bam released s3://encode-public/2016/10/26/0050ae6b-3083-43c3-8259-bfaa98c6fe39/ENCFF460OMS.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF489ZZO bam bam alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WLG/ 147243524 ENCODE Processing Pipeline a1198a41bc202de1fccd691860e0ff9d https://www.encodeproject.org/files/ENCFF489ZZO/@@download/ENCFF489ZZO.bam released s3://encode-public/2016/10/26/26e4566f-0135-4b01-a65f-58264c25ab5c/ENCFF489ZZO.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth extremely low read depth ENCFF712PPQ bam bam alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WLG/ 152516316 ENCODE Processing Pipeline b70a82c169ac5f9b8e636e9ecf42a59a https://www.encodeproject.org/files/ENCFF712PPQ/@@download/ENCFF712PPQ.bam released s3://encode-public/2020/10/27/be86361c-d92c-4e28-9164-3ffb3c9ace14/ENCFF712PPQ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF659TAG bam bam alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WLM/ 199448051 ENCODE Processing Pipeline 651cba74f847b45e2a52260b51ee81a5 https://www.encodeproject.org/files/ENCFF659TAG/@@download/ENCFF659TAG.bam released s3://encode-public/2020/10/27/2e8fd531-4903-44bc-917f-7260ae4ad0dc/ENCFF659TAG.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF369MUG bam bam unfiltered alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WLG/ 215861697 ENCODE Processing Pipeline a26cd3c2757c82b9d4df94ca2551d62d https://www.encodeproject.org/files/ENCFF369MUG/@@download/ENCFF369MUG.bam released s3://encode-public/2020/10/27/0f26f693-852d-42e0-aaeb-42605f230601/ENCFF369MUG.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF553YZW bam bam unfiltered alignments GRCh38 ENCSR000EAT Control ChIP-seq /human-donors/ENCDO000ACF/ EFO:0005332 GM18505 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WLM/ 280122364 ENCODE Processing Pipeline 017da5f90b837a0048edd3163ed049d1 https://www.encodeproject.org/files/ENCFF553YZW/@@download/ENCFF553YZW.bam released s3://encode-public/2020/10/27/2cee9319-3b7e-43f0-b1ec-b3cf53eaec27/ENCFF553YZW.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth extremely low read depth ENCFF913EBO fastq fastq reads ENCSR576JSM Control ChIP-seq /fly-donors/ENCDO771SGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40045/'], '@type': ['Target', 'Item'], 'name': 'ftz-f1-dmelanogaster', 'label': 'ftz-f1', '@id': '/targets/ftz-f1-dmelanogaster/', 'title': 'ftz-f1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6cf550c3-d96f-4af4-befc-321b52513237', 'status': 'released'} dm3 3L 18738756 18824165 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 342437652 Kevin White, UChicago 2d7e412c8d5444ee731ce916d0810b72 https://www.encodeproject.org/files/ENCFF913EBO/@@download/ENCFF913EBO.fastq.gz Illumina HiSeq 2500 /files/ENCFF754TPD/ released s3://encode-public/2015/07/23/b8c7e65a-6626-4cbc-b4e4-1239bac4fc66/ENCFF913EBO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF744KXM bam bam alignments dm3 ENCSR576JSM Control ChIP-seq /fly-donors/ENCDO771SGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40045/'], '@type': ['Target', 'Item'], 'name': 'ftz-f1-dmelanogaster', 'label': 'ftz-f1', '@id': '/targets/ftz-f1-dmelanogaster/', 'title': 'ftz-f1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6cf550c3-d96f-4af4-befc-321b52513237', 'status': 'released'} dm3 3L 18738756 18824165 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF913EBO/ 510435223 Kevin White, UChicago 10b0594737f2744a2cc01574036b1da6 https://www.encodeproject.org/files/ENCFF744KXM/@@download/ENCFF744KXM.bam released s3://encode-public/2015/08/05/bf07b2ea-94f7-4dab-a459-f7dc62ffc042/ENCFF744KXM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF787ODH bigWig bigWig signal of unique reads dm3 ENCSR576JSM Control ChIP-seq /fly-donors/ENCDO771SGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40045/'], '@type': ['Target', 'Item'], 'name': 'ftz-f1-dmelanogaster', 'label': 'ftz-f1', '@id': '/targets/ftz-f1-dmelanogaster/', 'title': 'ftz-f1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6cf550c3-d96f-4af4-befc-321b52513237', 'status': 'released'} dm3 3L 18738756 18824165 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF744KXM/ 15385207 Kevin White, UChicago abe44d0ee5252cee04337f568f41621d https://www.encodeproject.org/files/ENCFF787ODH/@@download/ENCFF787ODH.bigWig released s3://encode-public/2015/10/05/00106a47-f6ac-4cba-a4c8-0bddfb294d29/ENCFF787ODH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF094ENY bigWig bigWig read-depth normalized signal dm3 ENCSR576JSM Control ChIP-seq /fly-donors/ENCDO771SGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40045/'], '@type': ['Target', 'Item'], 'name': 'ftz-f1-dmelanogaster', 'label': 'ftz-f1', '@id': '/targets/ftz-f1-dmelanogaster/', 'title': 'ftz-f1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6cf550c3-d96f-4af4-befc-321b52513237', 'status': 'released'} dm3 3L 18738756 18824165 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF744KXM/ 15298294 Kevin White, UChicago 5cae6b1067dbc0e2247cc01282e9eeb4 https://www.encodeproject.org/files/ENCFF094ENY/@@download/ENCFF094ENY.bigWig released s3://encode-public/2015/10/05/ba9ce1d1-5327-434e-91a7-9c6545a37869/ENCFF094ENY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF630JZC bam bam alignments dm6 ENCSR576JSM Control ChIP-seq /fly-donors/ENCDO771SGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40045/'], '@type': ['Target', 'Item'], 'name': 'ftz-f1-dmelanogaster', 'label': 'ftz-f1', '@id': '/targets/ftz-f1-dmelanogaster/', 'title': 'ftz-f1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6cf550c3-d96f-4af4-befc-321b52513237', 'status': 'released'} dm3 3L 18738756 18824165 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF913EBO/ 508379500 Kevin White, UChicago 2e096ddb93abe7e33a46693556cd9c6e https://www.encodeproject.org/files/ENCFF630JZC/@@download/ENCFF630JZC.bam released s3://encode-public/2016/04/21/c34ba575-0b81-4da6-8ba0-0455983ba482/ENCFF630JZC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF146MCP bigWig bigWig read-depth normalized signal dm6 ENCSR576JSM Control ChIP-seq /fly-donors/ENCDO771SGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40045/'], '@type': ['Target', 'Item'], 'name': 'ftz-f1-dmelanogaster', 'label': 'ftz-f1', '@id': '/targets/ftz-f1-dmelanogaster/', 'title': 'ftz-f1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6cf550c3-d96f-4af4-befc-321b52513237', 'status': 'released'} dm3 3L 18738756 18824165 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF630JZC/ 17356464 Kevin White, UChicago ebcd9977d698dfa49516da4a514a908f https://www.encodeproject.org/files/ENCFF146MCP/@@download/ENCFF146MCP.bigWig released s3://encode-public/2016/06/20/7d380696-264f-455f-a72d-99d34cf2e2b4/ENCFF146MCP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF444DNE bigWig bigWig signal of unique reads dm6 ENCSR576JSM Control ChIP-seq /fly-donors/ENCDO771SGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40045/'], '@type': ['Target', 'Item'], 'name': 'ftz-f1-dmelanogaster', 'label': 'ftz-f1', '@id': '/targets/ftz-f1-dmelanogaster/', 'title': 'ftz-f1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6cf550c3-d96f-4af4-befc-321b52513237', 'status': 'released'} dm3 3L 18738756 18824165 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF630JZC/ 17469662 Kevin White, UChicago c47708a2a7080a5d50a525b6d6800c17 https://www.encodeproject.org/files/ENCFF444DNE/@@download/ENCFF444DNE.bigWig released s3://encode-public/2016/06/20/df6b10a7-130d-4f91-a92f-a43fa2498125/ENCFF444DNE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000OSD bigWig bigWig raw signal hg19 ENCSR000BHL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 /files/ENCFF000OSE/ 20508338 Richard Myers, HAIB db114519e21400fce48a3ad7e0202286 https://www.encodeproject.org/files/ENCFF000OSD/@@download/ENCFF000OSD.bigWig archived s3://encode-public/2012/01/23/671cdf7d-48d9-4a90-943b-0ee892b26c28/ENCFF000OSD.bigWig Lab custom hg19 archived low read length ENCFF000OSE bam bam alignments hg19 ENCSR000BHL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OSP/ 2775274392 Richard Myers, HAIB 97a0e334f9f6c85e0cfc30ccb286e3ef https://www.encodeproject.org/files/ENCFF000OSE/@@download/ENCFF000OSE.bam archived s3://encode-public/2012/01/23/930f8eda-b646-4fcd-9355-d98dcef27c49/ENCFF000OSE.bam Lab custom hg19 archived low read length ENCFF000OSP fastq fastq reads ENCSR000BHL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1973212520 Richard Myers, HAIB b67a7f36525ba2ed76eae039d17e5c05 https://www.encodeproject.org/files/ENCFF000OSP/@@download/ENCFF000OSP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/0eadd579-c871-4627-b18a-52abb819c63c/ENCFF000OSP.fastq.gz low read length ENCFF667QDX bam bam unfiltered alignments GRCh38 ENCSR000BHL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000OSP/ 2462901231 ENCODE Processing Pipeline d021d1d76c995f723344e72182b88edf https://www.encodeproject.org/files/ENCFF667QDX/@@download/ENCFF667QDX.bam released s3://encode-public/2016/10/26/94225f7b-2d6f-432b-bd52-34525a941e53/ENCFF667QDX.bam ENCODE3 GRCh38 archived low read length ENCFF948LKH bam bam alignments GRCh38 ENCSR000BHL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000OSP/ 1160461959 ENCODE Processing Pipeline 6ab9375552ee89439964fd88555e59d2 https://www.encodeproject.org/files/ENCFF948LKH/@@download/ENCFF948LKH.bam released s3://encode-public/2016/10/26/9ce0370c-c447-44a9-8989-f89e3b510713/ENCFF948LKH.bam ENCODE3 GRCh38 archived low read length ENCFF850LYD bam bam unfiltered alignments hg19 ENCSR000BHL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OSP/ 2454926864 ENCODE Processing Pipeline 9a776c9dc45af671e6f53763d6311df7 https://www.encodeproject.org/files/ENCFF850LYD/@@download/ENCFF850LYD.bam released 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s3://encode-public/2020/09/03/94a89e36-111a-4d9b-95e9-edbe2939ce70/ENCFF699LEV.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF595PNZ bam bam alignments GRCh38 ENCSR000BHL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OSP/, /files/ENCFF110MCL/ 1324872155 ENCODE Processing Pipeline 5bc5819480a91c84f373aa7fb88e86e7 https://www.encodeproject.org/files/ENCFF595PNZ/@@download/ENCFF595PNZ.bam released s3://encode-public/2020/09/03/3b07e264-eca6-45e3-8eda-33c9d573f412/ENCFF595PNZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001HGL bigWig bigWig raw signal hg19 ENCSR000DRO Control ChIP-seq /human-donors/ENCDO000ABX/ EFO:0001160 GM12873 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HGM/ 159445285 John Stamatoyannopoulos, UW c982e9be77544b7fc17bea49f3f7bb1f https://www.encodeproject.org/files/ENCFF001HGL/@@download/ENCFF001HGL.bigWig archived 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/files/ENCFF110MCL/ 713487233 ENCODE Processing Pipeline 6662e0a335306860cb6b6d283935bed4 https://www.encodeproject.org/files/ENCFF587FWQ/@@download/ENCFF587FWQ.bam released s3://encode-public/2020/09/03/383167ad-7ed2-4607-9902-9267fbdac424/ENCFF587FWQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF971SOK fastq fastq reads ENCSR537CBN Control ChIP-seq /fly-donors/ENCDO669HWJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 415703893 Kevin White, UChicago d0bac1b8b96a9b7937b6ae55ed7b6837 https://www.encodeproject.org/files/ENCFF971SOK/@@download/ENCFF971SOK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/94f65562-9869-4f0e-86ab-d278ff8daf53/ENCFF971SOK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF736XGF bam bam alignments dm3 ENCSR537CBN Control ChIP-seq /fly-donors/ENCDO669HWJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 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Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF736XGF/ 15102079 Kevin White, UChicago d4aeb031be469bfd6f3fbbe4367c9c58 https://www.encodeproject.org/files/ENCFF672ZZO/@@download/ENCFF672ZZO.bigWig released s3://encode-public/2015/10/05/ed574af2-02fc-4590-b019-6539d8fa79a4/ENCFF672ZZO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF149FNZ bigWig bigWig signal of unique reads dm3 ENCSR537CBN Control ChIP-seq /fly-donors/ENCDO669HWJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF736XGF/ 15104484 Kevin White, UChicago 50de9d22a39ec683829297a642853802 https://www.encodeproject.org/files/ENCFF149FNZ/@@download/ENCFF149FNZ.bigWig released s3://encode-public/2015/10/05/793b887c-4cea-4a68-9ee0-0b4b1aebc067/ENCFF149FNZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF784CYR bam bam alignments dm6 ENCSR537CBN Control ChIP-seq /fly-donors/ENCDO669HWJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF971SOK/ 608996244 Kevin White, UChicago ff62acbfbb157974c8fa87326dbbdb37 https://www.encodeproject.org/files/ENCFF784CYR/@@download/ENCFF784CYR.bam released s3://encode-public/2016/04/20/0d22aaf3-8519-405b-b224-e600ef6c987e/ENCFF784CYR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF837CBH bigWig bigWig read-depth normalized signal dm6 ENCSR537CBN Control ChIP-seq /fly-donors/ENCDO669HWJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF784CYR/ 17159471 Kevin White, UChicago bc7f93684ccf7c0ccbc01dd65744681e https://www.encodeproject.org/files/ENCFF837CBH/@@download/ENCFF837CBH.bigWig released s3://encode-public/2016/06/20/367cdc6c-48f1-435b-8e1e-db945e780a13/ENCFF837CBH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF445PZQ bigWig bigWig signal of unique reads dm6 ENCSR537CBN Control ChIP-seq /fly-donors/ENCDO669HWJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44505/'], '@type': ['Target', 'Item'], 'name': 'br-dmelanogaster', 'label': 'br', '@id': '/targets/br-dmelanogaster/', 'title': 'br (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7b117788-09f0-49a3-8f67-56d33db60080', 'status': 'released'} dm3 X 1444349 1550857 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF784CYR/ 17164122 Kevin White, UChicago 69f67ba71d8cff87386d42fba5c7841d https://www.encodeproject.org/files/ENCFF445PZQ/@@download/ENCFF445PZQ.bigWig released s3://encode-public/2016/06/20/56f284f6-d4b1-4689-8cd1-be2f2073e0df/ENCFF445PZQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001GXG bam bam alignments hg19 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXK/ 318923444 John Stamatoyannopoulos, UW 8e2dfec72ade961e0706a79277a5d320 https://www.encodeproject.org/files/ENCFF001GXG/@@download/ENCFF001GXG.bam archived s3://encode-public/2011/06/25/9ac802f7-2926-4853-b7a1-37cca011e321/ENCFF001GXG.bam Lab custom hg19 archived low read length insufficient read depth ENCFF001GXH bigWig bigWig raw signal hg19 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001GXG/ 106484477 John Stamatoyannopoulos, UW d45372c745f8e2d02bf7032a1eccf8e0 https://www.encodeproject.org/files/ENCFF001GXH/@@download/ENCFF001GXH.bigWig archived s3://encode-public/2011/06/25/f73f1fb8-e061-4b55-a4f3-314e38341e01/ENCFF001GXH.bigWig Lab custom hg19 archived low read length insufficient read depth ENCFF001GXK fastq fastq reads ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 327003265 John Stamatoyannopoulos, UW 31b20ed6a8f5c4eec72d4389bd6bb443 https://www.encodeproject.org/files/ENCFF001GXK/@@download/ENCFF001GXK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/8bd17ebb-32b0-4d41-9f02-1b2ed7f7afa7/ENCFF001GXK.fastq.gz low read length insufficient read depth ENCFF525BCB bam bam alignments GRCh38 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXK/, /files/ENCFF643CGH/ 292013042 ENCODE Processing Pipeline b7f41eac0cbd5ab01ae2534e1aa47529 https://www.encodeproject.org/files/ENCFF525BCB/@@download/ENCFF525BCB.bam released s3://encode-public/2016/08/09/20311d5d-1e13-441f-acbd-9e4fdc1f4df7/ENCFF525BCB.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF098RZI bam bam unfiltered alignments GRCh38 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXK/, /files/ENCFF643CGH/ 416173938 ENCODE Processing Pipeline 7912edcdb629438ca8b10bcaaa593565 https://www.encodeproject.org/files/ENCFF098RZI/@@download/ENCFF098RZI.bam released s3://encode-public/2016/08/09/19e57573-ef39-42a1-a7ab-d1536c8d4090/ENCFF098RZI.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF100UUE bam bam unfiltered alignments hg19 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXK/, /files/ENCFF807MUK/ 414004941 ENCODE Processing Pipeline 4464f64f83eeeb3fee5a42be89ca1222 https://www.encodeproject.org/files/ENCFF100UUE/@@download/ENCFF100UUE.bam released s3://encode-public/2016/11/13/5b507624-2179-472c-99c4-075100870bdd/ENCFF100UUE.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF137BYR bam bam alignments hg19 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXK/, /files/ENCFF807MUK/ 292141135 ENCODE Processing Pipeline 9f96ef5f649487dfa290cb5a92934697 https://www.encodeproject.org/files/ENCFF137BYR/@@download/ENCFF137BYR.bam released s3://encode-public/2016/11/13/ab1e0adc-45dc-4860-8fa2-a3d0ee983a7b/ENCFF137BYR.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF272GIR bam bam alignments GRCh38 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXK/, /files/ENCFF110MCL/ 321083276 ENCODE Processing Pipeline 4655b5919c1fc80611eb75bbe2c24443 https://www.encodeproject.org/files/ENCFF272GIR/@@download/ENCFF272GIR.bam released s3://encode-public/2020/09/03/11e58db4-48bd-4d91-9f83-5feb61faf5bd/ENCFF272GIR.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF679MMI bam bam unfiltered alignments GRCh38 ENCSR000DPQ Control ChIP-seq /human-donors/ENCDO002AAA/ CLO:0021752 AG09309 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001GXK/, /files/ENCFF110MCL/ 404171267 ENCODE Processing Pipeline 86a7d2eedb5c58cd47396cef16d26e0b https://www.encodeproject.org/files/ENCFF679MMI/@@download/ENCFF679MMI.bam released s3://encode-public/2020/09/03/673237e9-c2a1-4372-9896-4abcd2ed3801/ENCFF679MMI.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF000RLE fastq fastq reads ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 537391131 Richard Myers, HAIB 4168eb6cde2739af8b0dfd7fd68c7a06 https://www.encodeproject.org/files/ENCFF000RLE/@@download/ENCFF000RLE.fastq.gz Illumina Genome Analyzer archived s3://encode-public/2012/01/23/14abb815-abb8-44d2-8a8f-35c4f0b4b3c0/ENCFF000RLE.fastq.gz mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000RLI fastq fastq reads ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 1150345648 Richard Myers, HAIB 1bc1deda950f3233b15225067d6bdda2 https://www.encodeproject.org/files/ENCFF000RLI/@@download/ENCFF000RLI.fastq.gz Illumina Genome Analyzer archived s3://encode-public/2012/01/23/e652b968-367c-4836-b0ca-a89a76406b21/ENCFF000RLI.fastq.gz mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF351EPC bam bam unfiltered alignments GRCh38 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RLE/ 683051016 ENCODE Processing Pipeline c081ea60e9d967e5dee97ba6b3587772 https://www.encodeproject.org/files/ENCFF351EPC/@@download/ENCFF351EPC.bam archived s3://encode-public/2016/10/26/2fa874d5-d79b-4827-bbab-bfc97142af0b/ENCFF351EPC.bam ENCODE3 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF302BTP bam bam unfiltered alignments GRCh38 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RLI/, /files/ENCFF643CGH/ 1483182429 ENCODE Processing Pipeline 6b7cd99f8c2e02e5eaaac0c5f797da11 https://www.encodeproject.org/files/ENCFF302BTP/@@download/ENCFF302BTP.bam archived s3://encode-public/2016/10/26/bcebdcb7-8500-4f60-8a90-332f874ae1fb/ENCFF302BTP.bam ENCODE3 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF420YYT bam bam alignments GRCh38 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RLI/, /files/ENCFF643CGH/ 859438585 ENCODE Processing Pipeline a92fc219672d0a1e91d53c16fff3ddec https://www.encodeproject.org/files/ENCFF420YYT/@@download/ENCFF420YYT.bam archived s3://encode-public/2016/10/26/50fa2001-b438-4462-9527-df69123ff5b7/ENCFF420YYT.bam ENCODE3 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF964IMW bam bam alignments GRCh38 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RLE/ 255655882 ENCODE Processing Pipeline 949f41ce7139988903dfb7e58184969f https://www.encodeproject.org/files/ENCFF964IMW/@@download/ENCFF964IMW.bam archived s3://encode-public/2016/10/26/caa4c8f7-633e-4eea-8816-e72a0e7b19a7/ENCFF964IMW.bam ENCODE3 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF008SZX bam bam unfiltered alignments hg19 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RLI/, /files/ENCFF807MUK/ 1478921415 ENCODE Processing Pipeline 625cf1043b2582cbe2139ba33d3a9206 https://www.encodeproject.org/files/ENCFF008SZX/@@download/ENCFF008SZX.bam archived s3://encode-public/2016/11/13/9a46a3a2-8145-4145-b674-296b883112db/ENCFF008SZX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF388IBR bam bam unfiltered alignments hg19 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RLE/ 681781277 ENCODE Processing Pipeline 029647843b3809917763e4da0ed33662 https://www.encodeproject.org/files/ENCFF388IBR/@@download/ENCFF388IBR.bam archived s3://encode-public/2016/11/13/14673bef-2fe5-433d-96e5-5dab94776f77/ENCFF388IBR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF788EXW bam bam alignments hg19 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RLE/ 255827218 ENCODE Processing Pipeline e9e0d766383cfd5e0990c26129211775 https://www.encodeproject.org/files/ENCFF788EXW/@@download/ENCFF788EXW.bam archived s3://encode-public/2016/11/13/e1dc12ec-7037-4d29-a088-02007e539f00/ENCFF788EXW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF749CID bam bam alignments hg19 ENCSR000BJV Control ChIP-seq /human-donors/ENCDO000ADQ/ EFO:0005237 U-87 MG cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000RLI/, /files/ENCFF807MUK/ 859856328 ENCODE Processing Pipeline d974716513674febd84e386469bc8b50 https://www.encodeproject.org/files/ENCFF749CID/@@download/ENCFF749CID.bam archived s3://encode-public/2016/11/13/096e6c01-6c33-4060-89cd-9793f09acbdc/ENCFF749CID.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000YPF fastq fastq reads ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 single-ended 1064115041 Sherman Weissman, Yale 8117b4917df6eee1f1f9424ee909c415 https://www.encodeproject.org/files/ENCFF000YPF/@@download/ENCFF000YPF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/c0cd17f0-29ce-49c4-ae47-0e60c89ca0ea/ENCFF000YPF.fastq.gz low read depth insufficient read length ENCFF000YQF bigWig bigWig signal hg19 ENCSR000FAA Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 369371492 Sherman Weissman, Yale 77f06e3f27d59f8787463b7a26b4ab68 https://www.encodeproject.org/files/ENCFF000YQF/@@download/ENCFF000YQF.bigWig archived s3://encode-public/2010/12/02/60be0450-8bf1-4a15-8286-e6a3e055a929/ENCFF000YQF.bigWig Lab custom hg19 archived low read depth insufficient read length ENCFF000YQG bam bam alignments hg19 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YPF/ 1383278626 Sherman Weissman, Yale 231af82888b5746d4259520f9f224933 https://www.encodeproject.org/files/ENCFF000YQG/@@download/ENCFF000YQG.bam archived s3://encode-public/2010/12/02/35e4ea73-d8bc-4ae0-aa92-bcf7d7e37697/ENCFF000YQG.bam Lab custom hg19 archived low read depth insufficient read length ENCFF951YYF bam bam unfiltered alignments hg19 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPF/, /files/ENCFF807MUK/ 1309436656 ENCODE Processing Pipeline 7703e1ae7bef8e99cbf4bfe8ab059ee4 https://www.encodeproject.org/files/ENCFF951YYF/@@download/ENCFF951YYF.bam released s3://encode-public/2016/10/15/a01f4a70-3561-4363-8a73-18b64c52d167/ENCFF951YYF.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF998GMZ bam bam alignments hg19 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPF/, /files/ENCFF807MUK/ 606642539 ENCODE Processing Pipeline 1dc94c8ec0a34f25ac9629ad2f30611a https://www.encodeproject.org/files/ENCFF998GMZ/@@download/ENCFF998GMZ.bam released s3://encode-public/2016/10/15/e4c8c808-b57f-48dd-b8ee-6d4827be2773/ENCFF998GMZ.bam ENCODE3 hg19 archived low read depth insufficient read length ENCFF558KPF bam bam unfiltered alignments GRCh38 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPF/, /files/ENCFF643CGH/ 1313425892 ENCODE Processing Pipeline 8043e2355ce39e2ae90f77cf0cbcd5f1 https://www.encodeproject.org/files/ENCFF558KPF/@@download/ENCFF558KPF.bam released s3://encode-public/2016/12/13/9660e0be-45d1-4635-aee0-c9c9ff9e0930/ENCFF558KPF.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF332CUX bam bam alignments GRCh38 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPF/, /files/ENCFF643CGH/ 605907212 ENCODE Processing Pipeline b2d32f96d3a909dab6e616b42ffc7507 https://www.encodeproject.org/files/ENCFF332CUX/@@download/ENCFF332CUX.bam released s3://encode-public/2016/12/13/5fb21667-78d6-46d3-a20c-e842822bbbeb/ENCFF332CUX.bam ENCODE3 GRCh38 archived low read depth insufficient read length ENCFF518GSI bam bam unfiltered alignments GRCh38 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF110MCL/, /files/ENCFF000YPF/ 731672900 ENCODE Processing Pipeline 72cde8152305a9f471d66729fcdffc1c https://www.encodeproject.org/files/ENCFF518GSI/@@download/ENCFF518GSI.bam released s3://encode-public/2020/10/27/6f75dab9-1416-448a-ad9d-ef42ed63d650/ENCFF518GSI.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF848EQH bam bam alignments GRCh38 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF110MCL/, /files/ENCFF000YPF/ 333899326 ENCODE Processing Pipeline 27ba2ae64f196d3319bea2972ee5e300 https://www.encodeproject.org/files/ENCFF848EQH/@@download/ENCFF848EQH.bam released s3://encode-public/2020/10/27/ff3bac40-3cca-4d21-ad02-b8d2d5a5a7a9/ENCFF848EQH.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length ENCFF268NGI bam bam alignments GRCh38 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPF/, /files/ENCFF110MCL/ 509127417 ENCODE Processing Pipeline 14de339dc48ebf497319948f3578e606 https://www.encodeproject.org/files/ENCFF268NGI/@@download/ENCFF268NGI.bam released s3://encode-public/2021/02/04/91728aa5-8f39-48ca-b0c1-2bf9a6f3344e/ENCFF268NGI.bam ENCODE4 v1.6.1 GRCh38 released low read depth insufficient read length ENCFF796CUM bam bam unfiltered alignments GRCh38 ENCSR000FAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000YPF/, /files/ENCFF110MCL/ 1225679871 ENCODE Processing Pipeline d6980aa11db25be4a72f43954ae01a3b https://www.encodeproject.org/files/ENCFF796CUM/@@download/ENCFF796CUM.bam released s3://encode-public/2021/02/04/2eeeb0ba-9068-4321-9159-a4ff128f2e31/ENCFF796CUM.bam ENCODE4 v1.6.1 GRCh38 released low read depth insufficient read length ENCFF002AQC fastq fastq reads ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1041938712 Bing Ren, UCSD 851ff2d80733f42c68331369c3d0599c SRA:SRR3651365 https://www.encodeproject.org/files/ENCFF002AQC/@@download/ENCFF002AQC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/3e190be5-60fc-427a-9798-cc5fd20a3384/ENCFF002AQC.fastq.gz low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF002AQE fastq fastq reads ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1404020507 Bing Ren, UCSD 7c69e7186f3faf9848e446c4710a03c8 SRA:SRR3651366 https://www.encodeproject.org/files/ENCFF002AQE/@@download/ENCFF002AQE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/ca73eef2-8587-4bd9-8f8a-79632518b3b9/ENCFF002AQE.fastq.gz low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF951XFI bam bam unfiltered alignments mm10-minimal ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQE/ 1578150872 ENCODE Processing Pipeline b272d8339bbc97062a6f4be7b9a9c591 https://www.encodeproject.org/files/ENCFF951XFI/@@download/ENCFF951XFI.bam archived s3://encode-public/2015/02/09/905b4369-3d3b-4b0d-a686-52c131f6a434/ENCFF951XFI.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF984NTS bam bam unfiltered alignments mm10-minimal ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQC/, /files/ENCFF806TVZ/ 1106391894 ENCODE Processing Pipeline 9fdb8565b9de81f68837ae34a9bc29d1 https://www.encodeproject.org/files/ENCFF984NTS/@@download/ENCFF984NTS.bam archived s3://encode-public/2015/02/09/6fcae0a0-3912-4ec1-a2ad-b6c6c633379c/ENCFF984NTS.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF387UYW bam bam alignments mm10-minimal ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQE/ 1133648653 ENCODE Processing Pipeline 6767b3685bccee973a2859a13ee92f5e https://www.encodeproject.org/files/ENCFF387UYW/@@download/ENCFF387UYW.bam archived s3://encode-public/2015/05/24/776858a9-dc93-416d-be6f-566cbd0056ea/ENCFF387UYW.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF999TAG bam bam alignments mm10-minimal ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQC/, /files/ENCFF806TVZ/ 618590383 ENCODE Processing Pipeline 489e8969bdf2e75e18c05c52d75a9de0 https://www.encodeproject.org/files/ENCFF999TAG/@@download/ENCFF999TAG.bam archived s3://encode-public/2015/05/24/de751552-e30d-4e92-9f15-a4db9464b04f/ENCFF999TAG.bam low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF511BXF bam bam unfiltered alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQC/, /files/ENCFF018NEO/ 1107987030 ENCODE Processing Pipeline 62134faebea69546623a00d4cde5a4a5 https://www.encodeproject.org/files/ENCFF511BXF/@@download/ENCFF511BXF.bam released s3://encode-public/2016/05/20/49b1c83d-2018-4c92-94e2-e015ed9542d5/ENCFF511BXF.bam ENCODE3 mm10 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF446WFN bam bam alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQC/, /files/ENCFF018NEO/ 618400882 ENCODE Processing Pipeline e1d7f9fc033c42c84959dc0fc4041e2d https://www.encodeproject.org/files/ENCFF446WFN/@@download/ENCFF446WFN.bam released s3://encode-public/2016/05/20/e006f91a-85c8-4ff5-8065-eb80ac615c17/ENCFF446WFN.bam ENCODE3 mm10 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF032AWP bam bam alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQE/ 866618751 ENCODE Processing Pipeline c1de2a2326f1d73149e9a1bea430df59 https://www.encodeproject.org/files/ENCFF032AWP/@@download/ENCFF032AWP.bam released s3://encode-public/2016/11/22/6e63ffa2-da88-4954-bece-f3a576217aea/ENCFF032AWP.bam ENCODE3 mm10 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF438RIP bam bam unfiltered alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQE/ 1293713278 ENCODE Processing Pipeline 371ede453c1260d0abec215dd18b951f https://www.encodeproject.org/files/ENCFF438RIP/@@download/ENCFF438RIP.bam released s3://encode-public/2016/11/22/13a3e856-dc48-42cf-864c-d23f4d10d523/ENCFF438RIP.bam ENCODE3 mm10 archived low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF711ATA bam bam alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQC/ 664628521 ENCODE Processing Pipeline 27e4bf3dfd99f71399ce8f781260eb96 https://www.encodeproject.org/files/ENCFF711ATA/@@download/ENCFF711ATA.bam released s3://encode-public/2020/10/10/cd4b6d21-0e69-4924-b14d-3d382f07b1d6/ENCFF711ATA.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF997NXF bam bam unfiltered alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQE/, /files/ENCFF309GLL/ 1262014040 ENCODE Processing Pipeline d0a98ce0f8a1a9ad4db8e5db7a686a5a https://www.encodeproject.org/files/ENCFF997NXF/@@download/ENCFF997NXF.bam released s3://encode-public/2020/10/10/ac0e8de2-48f9-44ea-90e6-0ab5dc222a1c/ENCFF997NXF.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF545OUE bam bam unfiltered alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF002AQC/ 1077119632 ENCODE Processing Pipeline eb91d81de3585a9d95ab17cdfc2ca635 https://www.encodeproject.org/files/ENCFF545OUE/@@download/ENCFF545OUE.bam released s3://encode-public/2020/10/10/e2b6e4c8-3916-4725-b686-28713d4ae4be/ENCFF545OUE.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF169WXM bam bam alignments mm10 ENCSR091DHJ Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQE/, /files/ENCFF309GLL/ 931552140 ENCODE Processing Pipeline 31a1f8128536556d205012ca31fb06d4 https://www.encodeproject.org/files/ENCFF169WXM/@@download/ENCFF169WXM.bam released s3://encode-public/2020/10/10/3cdd30d1-0827-406e-acfb-8fabfd305472/ENCFF169WXM.bam ENCODE4 v1.5.1 mm10 released low read depth, moderate library complexity, low read length, mixed read lengths, mild to moderate bottlenecking ENCFF165GRD fastq fastq reads ENCSR507IIG Control ChIP-seq /worm-donors/ENCDO345IXN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 528800051 Kevin White, UChicago 945f9ebbcacb9c74ece3652e981c0194 https://www.encodeproject.org/files/ENCFF165GRD/@@download/ENCFF165GRD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/faff9aee-db99-4bdb-9f49-7dfc37a1c15f/ENCFF165GRD.fastq.gz missing genotype, missing compliant biosample characterization, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF312SVX bam bam alignments ce10 ENCSR507IIG Control ChIP-seq /worm-donors/ENCDO345IXN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF165GRD/ 765204576 Kevin White, UChicago 5e15e409b977a351b46a6056fa64a541 https://www.encodeproject.org/files/ENCFF312SVX/@@download/ENCFF312SVX.bam released s3://encode-public/2015/08/07/0a04a704-d17e-4a53-9090-344c39351c81/ENCFF312SVX.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF779PNC bigWig bigWig read-depth normalized signal ce10 ENCSR507IIG Control ChIP-seq /worm-donors/ENCDO345IXN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF312SVX/ 9960959 Kevin White, UChicago 84f4a4d0e1a120f98b747c9b6ccb682f https://www.encodeproject.org/files/ENCFF779PNC/@@download/ENCFF779PNC.bigWig released s3://encode-public/2015/10/02/2a8ae390-89de-45bb-9175-a10d1456c765/ENCFF779PNC.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF364HXT bigWig bigWig signal of unique reads ce10 ENCSR507IIG Control ChIP-seq /worm-donors/ENCDO345IXN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF312SVX/ 9959707 Kevin White, UChicago 756a6fb9d8bfe79aa244ec0b3ee530e2 https://www.encodeproject.org/files/ENCFF364HXT/@@download/ENCFF364HXT.bigWig released s3://encode-public/2015/10/02/f1275e14-5930-48a1-b3f7-a2baba9bc61f/ENCFF364HXT.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF115ITL bam bam alignments ce11 ENCSR507IIG Control ChIP-seq /worm-donors/ENCDO345IXN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF165GRD/ 765860577 Kevin White, UChicago 2e50a80aaf817d951a34cbdb006b451a https://www.encodeproject.org/files/ENCFF115ITL/@@download/ENCFF115ITL.bam released s3://encode-public/2016/01/20/22399ce2-3c07-4809-8c82-5d638e671f3c/ENCFF115ITL.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF393CPW bigWig bigWig signal of unique reads ce11 ENCSR507IIG Control ChIP-seq /worm-donors/ENCDO345IXN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF115ITL/ 9956924 Kevin White, UChicago 7cf0eed08741d9a3966800bbabd4d501 https://www.encodeproject.org/files/ENCFF393CPW/@@download/ENCFF393CPW.bigWig released s3://encode-public/2016/02/03/d0137053-7576-47be-8785-5be1e3914706/ENCFF393CPW.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF630KIU bigWig bigWig read-depth normalized signal ce11 ENCSR507IIG Control ChIP-seq /worm-donors/ENCDO345IXN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181012/'], '@type': ['Target', 'Item'], 'name': 'ceh-14-celegans', 'label': 'ceh-14', '@id': '/targets/ceh-14-celegans/', 'title': 'ceh-14 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cecf83b6-39b3-42b8-ae74-7a478f311b38', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF115ITL/ 9955952 Kevin White, UChicago 946d8b7b1c2cee89b8787ac34da433d1 https://www.encodeproject.org/files/ENCFF630KIU/@@download/ENCFF630KIU.bigWig released s3://encode-public/2016/02/03/a3067267-23de-4f72-910b-01d03b2c4a73/ENCFF630KIU.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF000WNH bam bam alignments hg19 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WNQ/ 205279975 Michael Snyder, Stanford 7323d1974cb5521e4b90f7b47db32373 https://www.encodeproject.org/files/ENCFF000WNH/@@download/ENCFF000WNH.bam archived s3://encode-public/2012/07/01/42a9daea-2722-4b8e-8419-6fbe25553c5f/ENCFF000WNH.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WNI bam bam alignments hg19 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WNS/ 227187807 Michael Snyder, Stanford f567fcf7dc60004a39506eafa8b36e0e https://www.encodeproject.org/files/ENCFF000WNI/@@download/ENCFF000WNI.bam archived s3://encode-public/2012/07/01/8a9443d5-ca8e-49bc-a1f7-a06a181b3e23/ENCFF000WNI.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WNJ bigWig bigWig signal hg19 ENCSR000EBB Control ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 274272072 Michael Snyder, Stanford c62043886b963c2ae9c14bb5c53a1e35 https://www.encodeproject.org/files/ENCFF000WNJ/@@download/ENCFF000WNJ.bigWig archived s3://encode-public/2012/07/01/214d0b27-53c5-43f1-b432-53074659bd1f/ENCFF000WNJ.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WNQ fastq fastq reads ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 160837696 Michael Snyder, Stanford 3290805e56ac853b6353b6122aa7a218 https://www.encodeproject.org/files/ENCFF000WNQ/@@download/ENCFF000WNQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/155115c7-8c7d-44cc-892e-832e7a96e668/ENCFF000WNQ.fastq.gz insufficient read length extremely low read depth ENCFF000WNS fastq fastq reads ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 177491300 Michael Snyder, Stanford e52b61bdfdc83db5e41981c6d491a881 https://www.encodeproject.org/files/ENCFF000WNS/@@download/ENCFF000WNS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/1582cb56-6f22-45f7-a46d-7d53752efc65/ENCFF000WNS.fastq.gz insufficient read length extremely low read depth ENCFF335OIH bam bam unfiltered alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WNS/ 228187485 ENCODE Processing Pipeline 3007ab6adad449b44df8a276b312a6af https://www.encodeproject.org/files/ENCFF335OIH/@@download/ENCFF335OIH.bam released s3://encode-public/2016/10/26/50fbfe9e-71d4-4cdd-bdb5-40de2d871360/ENCFF335OIH.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF577WKE bam bam unfiltered alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WNQ/ 206187594 ENCODE Processing Pipeline 86a01ba1f956d6866c5971cbf21c90d9 https://www.encodeproject.org/files/ENCFF577WKE/@@download/ENCFF577WKE.bam released s3://encode-public/2016/10/26/ae887529-5587-49a2-9e5e-8edae69eff23/ENCFF577WKE.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF644QUM bam bam alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WNQ/ 132499039 ENCODE Processing Pipeline e6d8f53ab3a6c2f59b6c035ff3d14ee3 https://www.encodeproject.org/files/ENCFF644QUM/@@download/ENCFF644QUM.bam released s3://encode-public/2016/10/26/d6a8a6ab-257a-43c2-be96-5d754df38252/ENCFF644QUM.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF300BIT bam bam alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WNS/ 146978712 ENCODE Processing Pipeline 955b821296b7aeccdd2ed68a50d6acaf https://www.encodeproject.org/files/ENCFF300BIT/@@download/ENCFF300BIT.bam released s3://encode-public/2016/10/26/6bca0420-ebc7-4112-909a-29775447a719/ENCFF300BIT.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF524RLM bam bam alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WNQ/ 135990059 ENCODE Processing Pipeline 82348f3527000dcd2b71f31cecdd8247 https://www.encodeproject.org/files/ENCFF524RLM/@@download/ENCFF524RLM.bam released s3://encode-public/2020/10/27/69cae5fa-bcf1-4c96-aaa9-3f89fa8c5b4f/ENCFF524RLM.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF334MMJ bam bam unfiltered alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WNS/ 215951414 ENCODE Processing Pipeline 42a05c31de2cd8059bad8d7bad8bd7bf https://www.encodeproject.org/files/ENCFF334MMJ/@@download/ENCFF334MMJ.bam released s3://encode-public/2020/10/27/d430af03-9cc8-4db0-adaa-7605f4201560/ENCFF334MMJ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF575WNB bam bam unfiltered alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WNQ/ 195783194 ENCODE Processing Pipeline b93b92174e23e4f7cb02bf72165fd530 https://www.encodeproject.org/files/ENCFF575WNB/@@download/ENCFF575WNB.bam released s3://encode-public/2020/10/27/f27eeb38-ee17-4fb6-95b9-0dab2b09c6b7/ENCFF575WNB.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF186QVC bam bam alignments GRCh38 ENCSR000EBB Control ChIP-seq /human-donors/ENCDO000ACI/ EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WNS/ 148687281 ENCODE Processing Pipeline 5b90e23212f4510e02eeaf654c318936 https://www.encodeproject.org/files/ENCFF186QVC/@@download/ENCFF186QVC.bam released s3://encode-public/2020/10/27/0237255d-ab4a-4790-9a37-416f1c06a8fe/ENCFF186QVC.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF914RKT bam bam alignments ce10 ENCSR225ALY Control ChIP-seq /worm-donors/ENCDO802MFP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266845/'], '@type': ['Target', 'Item'], 'name': 'dao-5-celegans', 'label': 'dao-5', '@id': '/targets/dao-5-celegans/', 'title': 'dao-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7ffd0016-9fa7-4e71-8329-ed54ad80041a', 'status': 'released'} ce10 I 10184766 10215925 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF898OOA/ 380414408 Kevin White, UChicago 9800187a888f7b0a359d4880c2e7915b https://www.encodeproject.org/files/ENCFF914RKT/@@download/ENCFF914RKT.bam released s3://encode-public/2015/08/19/c82e2f66-8928-44ca-8266-9e433bf2c272/ENCFF914RKT.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF898OOA fastq fastq reads ENCSR225ALY Control ChIP-seq /worm-donors/ENCDO802MFP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266845/'], '@type': ['Target', 'Item'], 'name': 'dao-5-celegans', 'label': 'dao-5', '@id': '/targets/dao-5-celegans/', 'title': 'dao-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7ffd0016-9fa7-4e71-8329-ed54ad80041a', 'status': 'released'} ce10 I 10184766 10215925 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 265113119 Kevin White, UChicago 08b12a730309626de21841f39da7789c https://www.encodeproject.org/files/ENCFF898OOA/@@download/ENCFF898OOA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/08/24/8a3711dc-6a74-46f8-b5ff-c0034fdcff65/ENCFF898OOA.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF768YZM bigWig bigWig signal of unique reads ce10 ENCSR225ALY Control ChIP-seq /worm-donors/ENCDO802MFP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266845/'], '@type': ['Target', 'Item'], 'name': 'dao-5-celegans', 'label': 'dao-5', '@id': '/targets/dao-5-celegans/', 'title': 'dao-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7ffd0016-9fa7-4e71-8329-ed54ad80041a', 'status': 'released'} ce10 I 10184766 10215925 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF914RKT/ 10046830 Kevin White, UChicago 4a2e94c463712f2b05e455de5c22f954 https://www.encodeproject.org/files/ENCFF768YZM/@@download/ENCFF768YZM.bigWig released s3://encode-public/2015/10/16/873436ef-73b2-4805-bd1e-3f0321fa2a7f/ENCFF768YZM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF695RLH bigWig bigWig read-depth normalized signal ce10 ENCSR225ALY Control ChIP-seq /worm-donors/ENCDO802MFP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266845/'], '@type': ['Target', 'Item'], 'name': 'dao-5-celegans', 'label': 'dao-5', '@id': '/targets/dao-5-celegans/', 'title': 'dao-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7ffd0016-9fa7-4e71-8329-ed54ad80041a', 'status': 'released'} ce10 I 10184766 10215925 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF914RKT/ 9962462 Kevin White, UChicago 77e17a400c7a3fa5527f7e3d3aaf9ef4 https://www.encodeproject.org/files/ENCFF695RLH/@@download/ENCFF695RLH.bigWig released s3://encode-public/2015/10/16/ffb132ee-0a15-45f0-b4fb-9c98ca13ae3c/ENCFF695RLH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF465BGK bam bam alignments ce11 ENCSR225ALY Control ChIP-seq /worm-donors/ENCDO802MFP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266845/'], '@type': ['Target', 'Item'], 'name': 'dao-5-celegans', 'label': 'dao-5', '@id': '/targets/dao-5-celegans/', 'title': 'dao-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7ffd0016-9fa7-4e71-8329-ed54ad80041a', 'status': 'released'} ce10 I 10184766 10215925 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF898OOA/ 380723729 Kevin White, UChicago 83bb412a92549f2a4155df87bed8b5a1 https://www.encodeproject.org/files/ENCFF465BGK/@@download/ENCFF465BGK.bam released s3://encode-public/2016/01/20/9189dea4-207f-4118-b28e-7370216c4e98/ENCFF465BGK.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF342IUS bigWig bigWig signal of unique reads ce11 ENCSR225ALY Control ChIP-seq /worm-donors/ENCDO802MFP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266845/'], '@type': ['Target', 'Item'], 'name': 'dao-5-celegans', 'label': 'dao-5', '@id': '/targets/dao-5-celegans/', 'title': 'dao-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7ffd0016-9fa7-4e71-8329-ed54ad80041a', 'status': 'released'} ce10 I 10184766 10215925 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF465BGK/ 10035947 Kevin White, UChicago 834a613902cc7f7f2dab3d8ad6981f43 https://www.encodeproject.org/files/ENCFF342IUS/@@download/ENCFF342IUS.bigWig released s3://encode-public/2016/02/03/83592037-966b-4f93-abe5-4555fce0b814/ENCFF342IUS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF036MBD bigWig bigWig read-depth normalized signal ce11 ENCSR225ALY Control ChIP-seq /worm-donors/ENCDO802MFP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/266845/'], '@type': ['Target', 'Item'], 'name': 'dao-5-celegans', 'label': 'dao-5', '@id': '/targets/dao-5-celegans/', 'title': 'dao-5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7ffd0016-9fa7-4e71-8329-ed54ad80041a', 'status': 'released'} ce10 I 10184766 10215925 DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF465BGK/ 9954613 Kevin White, UChicago 9b16d11755603ca1689abd4dae54cc31 https://www.encodeproject.org/files/ENCFF036MBD/@@download/ENCFF036MBD.bigWig released s3://encode-public/2016/02/03/963e25dc-2895-4c27-9ce4-6ccd768f3d13/ENCFF036MBD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF000WOJ bam bam alignments hg19 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WOQ/ 229294135 Michael Snyder, Stanford 2e403ef2974cea545bff5510bd91ee6c https://www.encodeproject.org/files/ENCFF000WOJ/@@download/ENCFF000WOJ.bam archived s3://encode-public/2012/07/01/400c92e7-97b3-4bf0-bfba-d4f02a093511/ENCFF000WOJ.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WOK bam bam alignments hg19 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WOT/ 188906428 Michael Snyder, Stanford 433932f91ffc02863998def6ceca4a01 https://www.encodeproject.org/files/ENCFF000WOK/@@download/ENCFF000WOK.bam archived s3://encode-public/2012/07/01/b280b29a-4732-4466-b921-ae62006a3e21/ENCFF000WOK.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WOM bigWig bigWig signal hg19 ENCSR000EBF Control ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 289946853 Michael Snyder, Stanford 9543ff42ce372d504bd0dc39eaafa057 https://www.encodeproject.org/files/ENCFF000WOM/@@download/ENCFF000WOM.bigWig archived s3://encode-public/2012/07/01/b963f09c-3524-41cb-8baa-39b4250f49d3/ENCFF000WOM.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WOQ fastq fastq reads ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 178418373 Michael Snyder, Stanford 152899248e9843add6ec6285d9d6d951 https://www.encodeproject.org/files/ENCFF000WOQ/@@download/ENCFF000WOQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/10ed62c2-6f81-4c0f-85b2-b98b9edde083/ENCFF000WOQ.fastq.gz insufficient read length extremely low read depth ENCFF000WOT fastq fastq reads ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 148192326 Michael Snyder, Stanford 309c1c0e05ab4f5babd68f45215d4891 https://www.encodeproject.org/files/ENCFF000WOT/@@download/ENCFF000WOT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/2ec729bf-cd1a-468f-b233-6288d97b3092/ENCFF000WOT.fastq.gz insufficient read length extremely low read depth ENCFF950YKO bam bam unfiltered alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WOQ/, /files/ENCFF643CGH/ 230447599 ENCODE Processing Pipeline 8ab2da77e0ed5aee08630ffc09701a10 https://www.encodeproject.org/files/ENCFF950YKO/@@download/ENCFF950YKO.bam released s3://encode-public/2016/10/26/1e309717-2354-42f7-99a1-682d886f3504/ENCFF950YKO.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF707CXU bam bam unfiltered alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WOT/ 189852577 ENCODE Processing Pipeline 268bbaf50f4cf5dd7a2213f79bb467bb https://www.encodeproject.org/files/ENCFF707CXU/@@download/ENCFF707CXU.bam released s3://encode-public/2016/10/26/fc16f3c9-e0c5-4781-90c2-83c4aa478172/ENCFF707CXU.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF060FBZ bam bam alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WOQ/, /files/ENCFF643CGH/ 145889046 ENCODE Processing Pipeline f19d74fdf5b90cfe60fb5ebfeec8defb https://www.encodeproject.org/files/ENCFF060FBZ/@@download/ENCFF060FBZ.bam released s3://encode-public/2016/10/26/3408a423-21d4-4ab1-8ef1-5173757ff98e/ENCFF060FBZ.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF475QAG bam bam alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WOT/ 117032530 ENCODE Processing Pipeline 5f0bffc871e45e63659f5c260f833c6c https://www.encodeproject.org/files/ENCFF475QAG/@@download/ENCFF475QAG.bam released s3://encode-public/2016/10/26/54e79aa7-be52-420a-8eb6-831015fef6fb/ENCFF475QAG.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF976BTQ bam bam alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WOQ/ 147700407 ENCODE Processing Pipeline 928850622ab15b9fe731867594de94de https://www.encodeproject.org/files/ENCFF976BTQ/@@download/ENCFF976BTQ.bam released s3://encode-public/2020/10/27/1a7ff7c1-58c7-4e3d-a367-e11ce178df52/ENCFF976BTQ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF668VUH bam bam unfiltered alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WOQ/ 217601664 ENCODE Processing Pipeline 436d07b74d063130519746acdf05a578 https://www.encodeproject.org/files/ENCFF668VUH/@@download/ENCFF668VUH.bam released s3://encode-public/2020/10/27/34a33ca9-90e3-4c54-ac44-6ab7f919da03/ENCFF668VUH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF615MYO bam bam unfiltered alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WOT/ 179199093 ENCODE Processing Pipeline bc3adeed9cc0d9a444a244680fd974da https://www.encodeproject.org/files/ENCFF615MYO/@@download/ENCFF615MYO.bam released s3://encode-public/2020/10/27/6dc11e75-caa0-441c-93a7-543181ff1315/ENCFF615MYO.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF726WYZ bam bam alignments GRCh38 ENCSR000EBF Control ChIP-seq /human-donors/ENCDO000ACJ/ EFO:0005350 GM19099 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WOT/ 117383225 ENCODE Processing Pipeline 749677b7577eef49ad4fd4d2384ddef9 https://www.encodeproject.org/files/ENCFF726WYZ/@@download/ENCFF726WYZ.bam released s3://encode-public/2020/10/27/1b1a3c45-e13b-484b-8f80-55e5d422653d/ENCFF726WYZ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF001HSY bigWig bigWig raw signal hg19 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HSZ/ 231951002 John Stamatoyannopoulos, UW 26a5c70d7dd02835191a81bc0dede5b7 https://www.encodeproject.org/files/ENCFF001HSY/@@download/ENCFF001HSY.bigWig archived s3://encode-public/2011/06/25/285e767b-aa59-40ed-9f2d-9f067c43bce2/ENCFF001HSY.bigWig Lab custom hg19 archived low read length ENCFF001HSZ bam bam alignments hg19 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTK/ 1141048481 John Stamatoyannopoulos, UW b4f29bc2404fdb9116a579c6d13cac48 https://www.encodeproject.org/files/ENCFF001HSZ/@@download/ENCFF001HSZ.bam archived s3://encode-public/2011/06/25/c05a809a-9ffb-4684-b344-192ad5e0f1c5/ENCFF001HSZ.bam Lab custom hg19 archived low read length ENCFF001HTK fastq fastq reads ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 1195741940 John Stamatoyannopoulos, UW c110b20848e1fb4fd21b108e428ecb9e https://www.encodeproject.org/files/ENCFF001HTK/@@download/ENCFF001HTK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/8af1a682-4a12-47cb-9a98-d1568c958562/ENCFF001HTK.fastq.gz low read length ENCFF280SOV bam bam unfiltered alignments GRCh38 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HTK/ 1452344187 ENCODE Processing Pipeline a69158ba95238dec15de1bf1b7ca3e4f https://www.encodeproject.org/files/ENCFF280SOV/@@download/ENCFF280SOV.bam released s3://encode-public/2016/08/09/464a3a95-af33-4963-931d-b204dd93caf6/ENCFF280SOV.bam ENCODE3 GRCh38 archived low read length ENCFF629FKE bam bam alignments GRCh38 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HTK/ 1057582708 ENCODE Processing Pipeline 500fe4df067da941f23ab3bdaae8597d https://www.encodeproject.org/files/ENCFF629FKE/@@download/ENCFF629FKE.bam released s3://encode-public/2016/08/09/b56741d1-b2c5-48a8-b59a-23161c495689/ENCFF629FKE.bam ENCODE3 GRCh38 archived low read length ENCFF947POT bam bam unfiltered alignments hg19 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HTK/ 1443890966 ENCODE Processing Pipeline cb8ef6ce6dc9b7f983d5af4fe846a3ef https://www.encodeproject.org/files/ENCFF947POT/@@download/ENCFF947POT.bam released s3://encode-public/2016/11/13/aeee18fc-e7aa-4759-a2c4-78eb59f983cc/ENCFF947POT.bam ENCODE3 hg19 archived low read length ENCFF807YUN bam bam alignments hg19 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HTK/ 1057890221 ENCODE Processing Pipeline 248b87b9eadbdaf2ae92aa0619891ce6 https://www.encodeproject.org/files/ENCFF807YUN/@@download/ENCFF807YUN.bam released s3://encode-public/2016/11/13/0e7b5eab-7139-4db0-b61b-0f65df3b7f93/ENCFF807YUN.bam ENCODE3 hg19 archived low read length ENCFF071AHX bam bam unfiltered alignments GRCh38 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTK/, /files/ENCFF110MCL/ 1419513960 ENCODE Processing Pipeline 740c65e3de6a23e7bf8038d1016e4ed2 https://www.encodeproject.org/files/ENCFF071AHX/@@download/ENCFF071AHX.bam released s3://encode-public/2020/09/03/cfd649ef-2fc8-47f4-a83b-d4ac592c7008/ENCFF071AHX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF231QLY bam bam alignments GRCh38 ENCSR000DVR Control ChIP-seq /human-donors/ENCDO253AAA/ CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HTK/, /files/ENCFF110MCL/ 1153557419 ENCODE Processing Pipeline 0f0e314e782c98016b24dc14e2c9eb25 https://www.encodeproject.org/files/ENCFF231QLY/@@download/ENCFF231QLY.bam released s3://encode-public/2020/09/03/388d0f07-b8d2-4d90-9d97-87c50bcfee34/ENCFF231QLY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF312FPS fastq fastq reads ENCSR605LPC Control ChIP-seq /fly-donors/ENCDO283TDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41404/'], '@type': ['Target', 'Item'], 'name': 'CG18476-dmelanogaster', 'label': 'CG18476', '@id': '/targets/CG18476-dmelanogaster/', 'title': 'CG18476 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '061fb88b-37fa-4a69-8932-5fc5595f681d', 'status': 'released'} dm3 3R 7490897 7512769 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 711471848 Kevin White, UChicago e12e88a694bdde64c413d78fc10df268 https://www.encodeproject.org/files/ENCFF312FPS/@@download/ENCFF312FPS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/de6c422a-f122-45cd-96d7-d054125767df/ENCFF312FPS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF793ZFB bam bam alignments dm3 ENCSR605LPC Control ChIP-seq /fly-donors/ENCDO283TDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41404/'], '@type': ['Target', 'Item'], 'name': 'CG18476-dmelanogaster', 'label': 'CG18476', '@id': '/targets/CG18476-dmelanogaster/', 'title': 'CG18476 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '061fb88b-37fa-4a69-8932-5fc5595f681d', 'status': 'released'} dm3 3R 7490897 7512769 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF312FPS/ 1028683303 Kevin White, UChicago 08a84816f91b8a2bb4e318ced92869d4 https://www.encodeproject.org/files/ENCFF793ZFB/@@download/ENCFF793ZFB.bam released s3://encode-public/2015/08/03/195a54a1-2779-422b-a246-76db7c92e603/ENCFF793ZFB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF164HKU bigWig bigWig signal of unique reads dm3 ENCSR605LPC Control ChIP-seq /fly-donors/ENCDO283TDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41404/'], '@type': ['Target', 'Item'], 'name': 'CG18476-dmelanogaster', 'label': 'CG18476', '@id': '/targets/CG18476-dmelanogaster/', 'title': 'CG18476 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '061fb88b-37fa-4a69-8932-5fc5595f681d', 'status': 'released'} dm3 3R 7490897 7512769 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF793ZFB/ 15310732 Kevin White, UChicago 7155a44c208abcde8115aa77971aa857 https://www.encodeproject.org/files/ENCFF164HKU/@@download/ENCFF164HKU.bigWig released s3://encode-public/2015/10/05/f6597012-70a2-439f-9788-34e86fa386c6/ENCFF164HKU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF376HLI bigWig bigWig read-depth normalized signal dm3 ENCSR605LPC Control ChIP-seq /fly-donors/ENCDO283TDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41404/'], '@type': ['Target', 'Item'], 'name': 'CG18476-dmelanogaster', 'label': 'CG18476', '@id': '/targets/CG18476-dmelanogaster/', 'title': 'CG18476 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '061fb88b-37fa-4a69-8932-5fc5595f681d', 'status': 'released'} dm3 3R 7490897 7512769 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF793ZFB/ 15308072 Kevin White, UChicago 81e632b571fcd2d7a191a3083d6607cf https://www.encodeproject.org/files/ENCFF376HLI/@@download/ENCFF376HLI.bigWig released s3://encode-public/2015/10/05/9ff74ed6-ddc4-46b5-b25d-2aeee94d578e/ENCFF376HLI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF676TTN bam bam alignments dm6 ENCSR605LPC Control ChIP-seq /fly-donors/ENCDO283TDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41404/'], '@type': ['Target', 'Item'], 'name': 'CG18476-dmelanogaster', 'label': 'CG18476', '@id': '/targets/CG18476-dmelanogaster/', 'title': 'CG18476 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '061fb88b-37fa-4a69-8932-5fc5595f681d', 'status': 'released'} dm3 3R 7490897 7512769 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF312FPS/ 1022929328 Kevin White, UChicago c412258e978a3eb17ff51428bf9faf1e https://www.encodeproject.org/files/ENCFF676TTN/@@download/ENCFF676TTN.bam released s3://encode-public/2016/04/21/8ad6bed0-4a4f-4d92-a3c2-3da4916b1713/ENCFF676TTN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF133ZYV bigWig bigWig signal of unique reads dm6 ENCSR605LPC Control ChIP-seq /fly-donors/ENCDO283TDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41404/'], '@type': ['Target', 'Item'], 'name': 'CG18476-dmelanogaster', 'label': 'CG18476', '@id': '/targets/CG18476-dmelanogaster/', 'title': 'CG18476 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '061fb88b-37fa-4a69-8932-5fc5595f681d', 'status': 'released'} dm3 3R 7490897 7512769 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF676TTN/ 17421215 Kevin White, UChicago 513a23d4e2a578a2a7f5d9f1f8272c78 https://www.encodeproject.org/files/ENCFF133ZYV/@@download/ENCFF133ZYV.bigWig released s3://encode-public/2016/06/21/8d0ac7c3-f82b-4d51-8ee5-4df52949ee60/ENCFF133ZYV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF425SFU bigWig bigWig read-depth normalized signal dm6 ENCSR605LPC Control ChIP-seq /fly-donors/ENCDO283TDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41404/'], '@type': ['Target', 'Item'], 'name': 'CG18476-dmelanogaster', 'label': 'CG18476', '@id': '/targets/CG18476-dmelanogaster/', 'title': 'CG18476 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '061fb88b-37fa-4a69-8932-5fc5595f681d', 'status': 'released'} dm3 3R 7490897 7512769 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF676TTN/ 17415880 Kevin White, UChicago 43b2e80f6d8b0d3f5381b38638ab7792 https://www.encodeproject.org/files/ENCFF425SFU/@@download/ENCFF425SFU.bigWig released s3://encode-public/2016/06/21/6e78f015-4f8c-475c-a765-0e9b20951688/ENCFF425SFU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF891VWL fastq fastq reads ENCSR533CSZ Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 1136062625 Kevin White, UChicago da8fd0b6e1544de529e985d827e42e57 https://www.encodeproject.org/files/ENCFF891VWL/@@download/ENCFF891VWL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/8c3ad655-2dcf-4115-9d65-8f8c5b2114b0/ENCFF891VWL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF877FQQ bam bam alignments ce10 ENCSR533CSZ Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF891VWL/ 1515692699 Kevin White, UChicago 807bf33c8080a3b5b290bb197779bd98 https://www.encodeproject.org/files/ENCFF877FQQ/@@download/ENCFF877FQQ.bam released s3://encode-public/2015/08/19/3d5fe4d4-6ce0-4452-b7bf-2345637988d2/ENCFF877FQQ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF458HJQ bigWig bigWig read-depth normalized signal ce10 ENCSR533CSZ Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF877FQQ/ 10042261 Kevin White, UChicago 6e509d6de2e782df47cbec643ecee466 https://www.encodeproject.org/files/ENCFF458HJQ/@@download/ENCFF458HJQ.bigWig released s3://encode-public/2015/10/02/fdc8ec4a-f16b-4694-a801-690f54055ffb/ENCFF458HJQ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF752MOY bigWig bigWig signal of unique reads ce10 ENCSR533CSZ Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF877FQQ/ 10012470 Kevin White, UChicago be77587f398f9796dd2630644016fb4b https://www.encodeproject.org/files/ENCFF752MOY/@@download/ENCFF752MOY.bigWig released s3://encode-public/2015/10/02/a0fb870f-272c-4e04-83a6-f14177fe9759/ENCFF752MOY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF277IVN bam bam alignments ce11 ENCSR533CSZ Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF891VWL/ 1516910338 Kevin White, UChicago 9e1b8c0904d87f07b8ce4f3940c54773 https://www.encodeproject.org/files/ENCFF277IVN/@@download/ENCFF277IVN.bam released s3://encode-public/2016/01/20/1190f0ca-b5ac-4c66-be24-f7fcbe7ee502/ENCFF277IVN.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF167TWL bigWig bigWig signal of unique reads ce11 ENCSR533CSZ Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF277IVN/ 10009283 Kevin White, UChicago 4b2863f4594da02764772a8829dd39ce https://www.encodeproject.org/files/ENCFF167TWL/@@download/ENCFF167TWL.bigWig released s3://encode-public/2016/02/03/5c82bd4a-4dc0-401f-8bca-e12bb2bd67b5/ENCFF167TWL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF077JYI bigWig bigWig read-depth normalized signal ce11 ENCSR533CSZ Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF277IVN/ 10034849 Kevin White, UChicago d063dc9fa242657b040024037809fa1e https://www.encodeproject.org/files/ENCFF077JYI/@@download/ENCFF077JYI.bigWig released s3://encode-public/2016/02/03/9d7dcc41-912e-4df0-91d1-34ac83b89f81/ENCFF077JYI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF587NEP fastq fastq reads ENCSR459PGV Control ChIP-seq /fly-donors/ENCDO968JML/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1916265953 Kevin White, UChicago 241476a384e0a506301c2cb7e0919e07 https://www.encodeproject.org/files/ENCFF587NEP/@@download/ENCFF587NEP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/22/c3832522-3474-4893-b809-e85773f4f3a2/ENCFF587NEP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF604DOU bam bam alignments dm3 ENCSR459PGV Control ChIP-seq /fly-donors/ENCDO968JML/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF587NEP/ 2805682845 Kevin White, UChicago d0e684ca96bd8bc3970e37a9e5c1a1e2 https://www.encodeproject.org/files/ENCFF604DOU/@@download/ENCFF604DOU.bam released s3://encode-public/2015/10/22/a381bb0a-0d5b-4a95-9d2f-41601b5c5b3f/ENCFF604DOU.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF708HAA bigWig bigWig read-depth normalized signal dm3 ENCSR459PGV Control ChIP-seq /fly-donors/ENCDO968JML/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF604DOU/ 15714738 Kevin White, UChicago 5c5933ced7c0e629bb04ba3c216796a7 https://www.encodeproject.org/files/ENCFF708HAA/@@download/ENCFF708HAA.bigWig released s3://encode-public/2015/10/22/5ada0c76-abf7-4941-ab03-b7453be45321/ENCFF708HAA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF586JSY bigWig bigWig signal of unique reads dm3 ENCSR459PGV Control ChIP-seq /fly-donors/ENCDO968JML/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF604DOU/ 15683636 Kevin White, UChicago 1db70a46575a1199ae6706bfcc6f8584 https://www.encodeproject.org/files/ENCFF586JSY/@@download/ENCFF586JSY.bigWig released s3://encode-public/2015/10/22/62de809d-862c-401e-b138-6804c3131d05/ENCFF586JSY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF315YDU bam bam alignments dm6 ENCSR459PGV Control ChIP-seq /fly-donors/ENCDO968JML/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF587NEP/ 2791697899 Kevin White, UChicago 484e8acd0be3f063f30b6fac71d975c1 https://www.encodeproject.org/files/ENCFF315YDU/@@download/ENCFF315YDU.bam released s3://encode-public/2016/04/22/0b146485-0088-4e02-b601-025601401f2b/ENCFF315YDU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF747BCA bigWig bigWig signal of unique reads dm6 ENCSR459PGV Control ChIP-seq /fly-donors/ENCDO968JML/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF315YDU/ 17731172 Kevin White, UChicago 8f1922de0e561e7e6f1a92e0fa70d80b https://www.encodeproject.org/files/ENCFF747BCA/@@download/ENCFF747BCA.bigWig released s3://encode-public/2016/06/20/ce10d361-56d2-4bda-9ba1-56751b44800a/ENCFF747BCA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF473VXU bigWig bigWig read-depth normalized signal dm6 ENCSR459PGV Control ChIP-seq /fly-donors/ENCDO968JML/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} dm3 3R 4550354 4628898 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF315YDU/ 17775947 Kevin White, UChicago aacfc5da3bc8cb384cf66c14cbb1be7f https://www.encodeproject.org/files/ENCFF473VXU/@@download/ENCFF473VXU.bigWig released s3://encode-public/2016/06/20/3806c26b-a266-4d74-9d5f-ddc37a3fbd97/ENCFF473VXU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF237UKX fastq fastq reads ENCSR191TAJ Control ChIP-seq /worm-donors/ENCDO499UZJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178929/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.3-celegans', 'label': 'snpc-1.3', '@id': '/targets/snpc-1.3-celegans/', 'title': 'snpc-1.3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d265f90-3c14-42b6-9941-653eb72c292c', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 563416336 Kevin White, UChicago 2810a29dd0d9234f2ae49061c75670b7 https://www.encodeproject.org/files/ENCFF237UKX/@@download/ENCFF237UKX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/07/30/5f72b83f-7dfe-4660-9d30-399bd836fdf2/ENCFF237UKX.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF257FGT bam bam alignments ce10 ENCSR191TAJ Control ChIP-seq /worm-donors/ENCDO499UZJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178929/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.3-celegans', 'label': 'snpc-1.3', '@id': '/targets/snpc-1.3-celegans/', 'title': 'snpc-1.3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d265f90-3c14-42b6-9941-653eb72c292c', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF237UKX/ 833838618 Kevin White, UChicago 908f00f0cc2c37433397afc2f0b8e146 https://www.encodeproject.org/files/ENCFF257FGT/@@download/ENCFF257FGT.bam released s3://encode-public/2015/08/19/975c8ccb-4331-4ad2-85be-56c1f32bf4c9/ENCFF257FGT.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF072KBA bigWig bigWig signal of unique reads ce10 ENCSR191TAJ Control ChIP-seq /worm-donors/ENCDO499UZJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178929/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.3-celegans', 'label': 'snpc-1.3', '@id': '/targets/snpc-1.3-celegans/', 'title': 'snpc-1.3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d265f90-3c14-42b6-9941-653eb72c292c', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF257FGT/ 10014875 Kevin White, UChicago f4a1baf2b0a80ff946e00da3a77edb0a https://www.encodeproject.org/files/ENCFF072KBA/@@download/ENCFF072KBA.bigWig released s3://encode-public/2015/10/02/727fd48a-1e6a-4bb4-a92c-18d86c0ba3c9/ENCFF072KBA.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF591ISV bigWig bigWig read-depth normalized signal ce10 ENCSR191TAJ Control ChIP-seq /worm-donors/ENCDO499UZJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178929/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.3-celegans', 'label': 'snpc-1.3', '@id': '/targets/snpc-1.3-celegans/', 'title': 'snpc-1.3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d265f90-3c14-42b6-9941-653eb72c292c', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF257FGT/ 10017581 Kevin White, UChicago ebc143b1ae60f0f71b30a88b8a318abd https://www.encodeproject.org/files/ENCFF591ISV/@@download/ENCFF591ISV.bigWig released s3://encode-public/2015/10/02/b5ea6f75-175d-4762-be96-1042be07e643/ENCFF591ISV.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF628SDH bam bam alignments ce11 ENCSR191TAJ Control ChIP-seq /worm-donors/ENCDO499UZJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178929/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.3-celegans', 'label': 'snpc-1.3', '@id': '/targets/snpc-1.3-celegans/', 'title': 'snpc-1.3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d265f90-3c14-42b6-9941-653eb72c292c', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF237UKX/ 834999248 Kevin White, UChicago 5f7ae01019ca47a3c9dece29a38209d3 https://www.encodeproject.org/files/ENCFF628SDH/@@download/ENCFF628SDH.bam released s3://encode-public/2016/01/16/9e7a6587-fdcd-4d55-ae3b-4770c9024684/ENCFF628SDH.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF977KTQ bigWig bigWig signal of unique reads ce11 ENCSR191TAJ Control ChIP-seq /worm-donors/ENCDO499UZJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178929/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.3-celegans', 'label': 'snpc-1.3', '@id': '/targets/snpc-1.3-celegans/', 'title': 'snpc-1.3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d265f90-3c14-42b6-9941-653eb72c292c', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF628SDH/ 10011570 Kevin White, UChicago 314e3517b068136f5ca87213e7ae8feb https://www.encodeproject.org/files/ENCFF977KTQ/@@download/ENCFF977KTQ.bigWig released s3://encode-public/2016/02/03/6fe8d138-5415-4a5f-ba9b-64c057b2f53a/ENCFF977KTQ.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF623EZL bigWig bigWig read-depth normalized signal ce11 ENCSR191TAJ Control ChIP-seq /worm-donors/ENCDO499UZJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178929/'], '@type': ['Target', 'Item'], 'name': 'snpc-1.3-celegans', 'label': 'snpc-1.3', '@id': '/targets/snpc-1.3-celegans/', 'title': 'snpc-1.3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1d265f90-3c14-42b6-9941-653eb72c292c', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF628SDH/ 10013776 Kevin White, UChicago d621c9bddbcc90592408d6b7775cdb99 https://www.encodeproject.org/files/ENCFF623EZL/@@download/ENCFF623EZL.bigWig released s3://encode-public/2016/02/03/d6258d61-ab5f-4163-8857-a809470cd53d/ENCFF623EZL.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF000WTA bigWig bigWig signal hg19 ENCSR000EUR Control ChIP-seq EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 411102929 Peggy Farnham, USC 427e2ef594455f2d2d9b0dcb665d7af4 https://www.encodeproject.org/files/ENCFF000WTA/@@download/ENCFF000WTA.bigWig archived s3://encode-public/2010/12/06/37fd53ab-f3a3-4919-816d-50f1e869dec0/ENCFF000WTA.bigWig Lab custom hg19 archived ENCFF000WTB bam bam alignments hg19 ENCSR000EUR Control ChIP-seq EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 34 692394089 Peggy Farnham, USC a925bcaf8aaf2424133e950b288fbdb6 https://www.encodeproject.org/files/ENCFF000WTB/@@download/ENCFF000WTB.bam archived s3://encode-public/2010/12/06/1a64fa3b-c512-4613-9e7c-c4266f5b1412/ENCFF000WTB.bam Lab custom hg19 archived ENCFF000WUW fastq fastq reads ENCSR000EUR Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 76 single-ended 4984854920 Peggy Farnham, USC a8c87d8beda11b74845c48f042514176 https://www.encodeproject.org/files/ENCFF000WUW/@@download/ENCFF000WUW.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/06/5adbcac6-f7af-4b2f-9a08-901646622b0e/ENCFF000WUW.fastq.gz ENCFF095RRC bam bam unfiltered alignments hg19 ENCSR000EUR Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000WUW/, /files/ENCFF807MUK/ 3306715514 ENCODE Processing Pipeline a199c9ba0cca2e08c14a99ecf04ed97d https://www.encodeproject.org/files/ENCFF095RRC/@@download/ENCFF095RRC.bam released s3://encode-public/2018/06/08/dfee4b71-d3d3-441b-9316-160631879bb0/ENCFF095RRC.bam ENCODE3 hg19 archived ENCFF559ZZZ bam bam alignments GRCh38 ENCSR000EUR Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000WUW/, /files/ENCFF643CGH/ 1423417727 ENCODE Processing Pipeline 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GRCh38 ENCSR000DVJ Control ChIP-seq /human-donors/ENCDO107AAA/ CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HSI/, /files/ENCFF110MCL/ 910802249 ENCODE Processing Pipeline 11b69355c5f1b157c5bbca6a75066879 https://www.encodeproject.org/files/ENCFF712QCZ/@@download/ENCFF712QCZ.bam released s3://encode-public/2020/09/03/9b41ec1b-1025-4f21-b5ac-2c29a577cfe8/ENCFF712QCZ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF696XIT bam bam unfiltered alignments GRCh38 ENCSR000DVJ Control ChIP-seq /human-donors/ENCDO107AAA/ CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HSI/, /files/ENCFF110MCL/ 1123844671 ENCODE Processing Pipeline 78d82f9c76c8543f1b2b154a096bb457 https://www.encodeproject.org/files/ENCFF696XIT/@@download/ENCFF696XIT.bam released s3://encode-public/2020/09/03/f79da40b-95fd-44e0-8675-99b206f8bc96/ENCFF696XIT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF273FCS fastq fastq reads ENCSR908EFA Control ChIP-seq /fly-donors/ENCDO762LVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36057/'], '@type': ['Target', 'Item'], 'name': 'Jra-dmelanogaster', 'label': 'Jra', '@id': '/targets/Jra-dmelanogaster/', 'title': 'Jra (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '436e1fa5-928e-4037-b714-f866664f2a2f', 'status': 'released'} dm3 2R 5927514 6045284 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 50 single-ended 684473587 Kevin White, UChicago d7d8b007bb3be733c9b91f3702483c95 https://www.encodeproject.org/files/ENCFF273FCS/@@download/ENCFF273FCS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/562db254-90f2-4ede-ad88-9f7bf9d3789b/ENCFF273FCS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF828YGE bam bam alignments dm3 ENCSR908EFA Control ChIP-seq /fly-donors/ENCDO762LVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36057/'], '@type': ['Target', 'Item'], 'name': 'Jra-dmelanogaster', 'label': 'Jra', '@id': 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Control ChIP-seq /fly-donors/ENCDO762LVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36057/'], '@type': ['Target', 'Item'], 'name': 'Jra-dmelanogaster', 'label': 'Jra', '@id': '/targets/Jra-dmelanogaster/', 'title': 'Jra (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '436e1fa5-928e-4037-b714-f866664f2a2f', 'status': 'released'} dm3 2R 5927514 6045284 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF828YGE/ 15198360 Kevin White, UChicago 953e1c4cf03af8d63e75f07ac7aaa81a https://www.encodeproject.org/files/ENCFF704NLT/@@download/ENCFF704NLT.bigWig released s3://encode-public/2015/10/06/bcaa89db-17ee-497f-bcce-3566d1aef985/ENCFF704NLT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF801KTB bam bam alignments dm6 ENCSR908EFA Control ChIP-seq /fly-donors/ENCDO762LVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36057/'], '@type': ['Target', 'Item'], 'name': 'Jra-dmelanogaster', 'label': 'Jra', '@id': '/targets/Jra-dmelanogaster/', 'title': 'Jra (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '436e1fa5-928e-4037-b714-f866664f2a2f', 'status': 'released'} dm3 2R 5927514 6045284 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF273FCS/ 930015472 Kevin White, UChicago 0dad1c5b2c67c646164ddeb3ead18608 https://www.encodeproject.org/files/ENCFF801KTB/@@download/ENCFF801KTB.bam released s3://encode-public/2016/04/21/d7fdda1e-e93b-4522-988c-05b8c4afe0a5/ENCFF801KTB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF005UVP bigWig bigWig signal of unique reads dm6 ENCSR908EFA Control ChIP-seq /fly-donors/ENCDO762LVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': 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characterization ENCFF000AVF bam bam alignments hg19 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 5 5_1 36 /files/ENCFF000AVG/ 324096834 Bradley Bernstein, Broad 336934546a9180d2abb1afb14bc1f6ad https://www.encodeproject.org/files/ENCFF000AVF/@@download/ENCFF000AVF.bam archived s3://encode-public/2010/11/16/cd917967-c54b-4bcb-b112-174ccea45c94/ENCFF000AVF.bam Lab custom hg19 archived low read length, mixed read lengths ENCFF000AVG bam bam alignments hg19 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 5 5_1 36 522282469 Bradley Bernstein, Broad 0b2c021897371bd7dd2478727ec18e3b https://www.encodeproject.org/files/ENCFF000AVG/@@download/ENCFF000AVG.bam archived s3://encode-public/2010/11/16/7e1f1252-ec0a-48d0-a4d7-6a08abaebbc1/ENCFF000AVG.bam Lab custom hg19 archived low read length, mixed read lengths ENCFF000AVH bigWig bigWig signal hg19 ENCSR000AMI Control ChIP-seq EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 426083412 Bradley Bernstein, Broad a19d5fda9cbf2b1941a2e582763ac62a https://www.encodeproject.org/files/ENCFF000AVH/@@download/ENCFF000AVH.bigWig archived s3://encode-public/2010/11/16/f09ada99-3703-4246-9a2e-c15e1858aa44/ENCFF000AVH.bigWig low read length, mixed read lengths ENCFF000AVM fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 5 5_1 36 single-ended 497931658 Bradley Bernstein, Broad cd7ba9dc6599d3fe1f2d1909fb6bb0f4 https://www.encodeproject.org/files/ENCFF000AVM/@@download/ENCFF000AVM.fastq.gz Illumina Genome Analyzer IIe archived s3://encode-public/2010/11/16/e3ff2e51-ca4e-414d-8ea9-21ad3c0bc528/ENCFF000AVM.fastq.gz low read length, mixed read lengths ENCFF000AVR fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 5 5_2 36 single-ended 428542273 Bradley Bernstein, Broad 79254e2d445a791619e44d9f32f4fbdf https://www.encodeproject.org/files/ENCFF000AVR/@@download/ENCFF000AVR.fastq.gz Illumina Genome Analyzer IIe archived s3://encode-public/2010/11/16/dd7b4082-1c97-4995-b1d4-944f6c0b533d/ENCFF000AVR.fastq.gz low read length, mixed read lengths ENCFF097ZGG bam bam unfiltered alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 3 3_1, 3_2 36 /files/ENCFF809ZPN/, /files/ENCFF110MCL/, /files/ENCFF740ECI/, /files/ENCFF805KPU/, /files/ENCFF164ZWM/ 2465390304 ENCODE Processing Pipeline 248db503b88e132e6f11c5d70881bdeb https://www.encodeproject.org/files/ENCFF097ZGG/@@download/ENCFF097ZGG.bam released s3://encode-public/2020/09/17/b03ed7df-0d0b-4793-a83d-0a9841aae445/ENCFF097ZGG.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF510CSJ bam bam unfiltered alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_1, 2_2, 2_3, 2_5, 2_6, 2_7 36 /files/ENCFF145GCJ/, /files/ENCFF368CYL/, /files/ENCFF138KKQ/, /files/ENCFF303YPV/, /files/ENCFF659UFR/, /files/ENCFF110MCL/, /files/ENCFF472QMD/, /files/ENCFF393KUX/, /files/ENCFF763DAQ/, /files/ENCFF064XIS/, /files/ENCFF635VQA/, /files/ENCFF508ZFI/ 7067640695 ENCODE Processing Pipeline f820ecf1884845325206598fc4ae191a https://www.encodeproject.org/files/ENCFF510CSJ/@@download/ENCFF510CSJ.bam released s3://encode-public/2020/09/17/6449f07b-4c05-4494-8efe-6cd8f823610a/ENCFF510CSJ.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF868PXO bam bam unfiltered alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF663FLW/, /files/ENCFF689EIT/ 1401360291 ENCODE Processing Pipeline 283a5b212ea904c25ce2095294a8cf7a https://www.encodeproject.org/files/ENCFF868PXO/@@download/ENCFF868PXO.bam released s3://encode-public/2020/09/17/a0bd82e3-96ac-4edd-939e-c5b050235ff6/ENCFF868PXO.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF451YMU bam bam alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 3 3_1, 3_2 36 /files/ENCFF809ZPN/, /files/ENCFF110MCL/, /files/ENCFF740ECI/, /files/ENCFF805KPU/, /files/ENCFF164ZWM/ 1965516787 ENCODE Processing Pipeline 305f9b469f0b426b54e611ca4b87a179 https://www.encodeproject.org/files/ENCFF451YMU/@@download/ENCFF451YMU.bam released s3://encode-public/2020/09/17/feec3007-d2fa-455d-b336-28777cb9890f/ENCFF451YMU.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF381IYY bam bam alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF663FLW/, /files/ENCFF689EIT/ 1071019733 ENCODE Processing Pipeline db5e494a0d715efd2aa4de17832c52b3 https://www.encodeproject.org/files/ENCFF381IYY/@@download/ENCFF381IYY.bam released s3://encode-public/2020/09/17/a4d4be45-1953-4089-a0f8-0848a2336066/ENCFF381IYY.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF303YPV fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_1 36 single-ended 922747631 Bradley Bernstein, Broad 3d828fc836087074c2f5f6dc89d4a20f 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200-600, 300-600, 300-800 5 5_1, 5_2 36 /files/ENCFF000AVR/, /files/ENCFF000AVM/, /files/ENCFF643CGH/ 576636773 ENCODE Processing Pipeline 756d7ebcadf003601caa755f575075c3 https://www.encodeproject.org/files/ENCFF178MIM/@@download/ENCFF178MIM.bam archived s3://encode-public/2016/07/13/e4c90d9a-fa3c-417f-822a-99f7a75d3cef/ENCFF178MIM.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF740ECI fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 3 3_2 76 single-ended 1179131891 Bradley Bernstein, Broad 36a59025f7366cd12547f6d77907d979 SRA:SRR5331384 https://www.encodeproject.org/files/ENCFF740ECI/@@download/ENCFF740ECI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/ac0686bc-85f1-46b2-adc3-dd4fef0862c7/ENCFF740ECI.fastq.gz low read length, mixed read lengths ENCFF145GCJ fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_3 36 single-ended 514383601 Bradley Bernstein, Broad 54224562edc46fae84d91534385e5f6f SRA:SRR5331397 https://www.encodeproject.org/files/ENCFF145GCJ/@@download/ENCFF145GCJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/175908dc-0fb1-438c-b6fb-3521b41be5e5/ENCFF145GCJ.fastq.gz low read length, mixed read lengths ENCFF659UFR fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_2 36 single-ended 272219353 Bradley Bernstein, Broad d51da9dc92751cdc69a7c9ab98c3b95b SRA:SRR5331382 https://www.encodeproject.org/files/ENCFF659UFR/@@download/ENCFF659UFR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/241ba9ba-2f87-42c2-a699-738277b03b4a/ENCFF659UFR.fastq.gz low read length, mixed read lengths ENCFF164ZWM fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 3 3_1 76 single-ended 749155980 Bradley Bernstein, Broad e2d4039158b149608494227738458ad6 SRA:SRR5331388 https://www.encodeproject.org/files/ENCFF164ZWM/@@download/ENCFF164ZWM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/3a3e3eb1-c319-48fa-8c26-7125a9fe6ff4/ENCFF164ZWM.fastq.gz low read length, mixed read lengths ENCFF809ZPN fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 3 3_1 76 single-ended 763127785 Bradley Bernstein, Broad 67ce1b69351e443ea3bc26b125629a05 SRA:SRR5331389 https://www.encodeproject.org/files/ENCFF809ZPN/@@download/ENCFF809ZPN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/e6fafefc-36c1-49be-bdd0-c196905aa0d2/ENCFF809ZPN.fastq.gz low read length, mixed read lengths ENCFF508ZFI fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_3 36 single-ended 517308964 Bradley Bernstein, Broad 2951f9f7760a07531a8c18829db53dd9 SRA:SRR5331398 https://www.encodeproject.org/files/ENCFF508ZFI/@@download/ENCFF508ZFI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/0006bb61-5126-40bf-9179-88dc9e0b4ea1/ENCFF508ZFI.fastq.gz low read length, mixed read lengths ENCFF763DAQ fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_2 36 single-ended 333387059 Bradley Bernstein, Broad 04fd8c854cddc64739d6e20ab0950bc8 SRA:SRR5331383 https://www.encodeproject.org/files/ENCFF763DAQ/@@download/ENCFF763DAQ.fastq.gz Illumina HiSeq 2500 released 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50dcad2282bc017c2b56892bf536b847 SRA:SRR5331386 https://www.encodeproject.org/files/ENCFF663FLW/@@download/ENCFF663FLW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/6bcb1351-a460-4ae5-a6f5-9b87058e5940/ENCFF663FLW.fastq.gz low read length, mixed read lengths ENCFF689EIT fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 4 4_1 76 single-ended 1109933217 Bradley Bernstein, Broad 5611a1114fe191d537dc1b2299755202 SRA:SRR5331387 https://www.encodeproject.org/files/ENCFF689EIT/@@download/ENCFF689EIT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/8a9e0b1c-c31c-4b0d-a6ed-bebc08f2bb2c/ENCFF689EIT.fastq.gz low read length, mixed read lengths ENCFF698YIB fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_4 25 paired-ended 1 /files/ENCFF837MEC/ 775669502 Bradley Bernstein, Broad 4c517d6cf28bc5b9c78ecbb00fbc8584 https://www.encodeproject.org/files/ENCFF698YIB/@@download/ENCFF698YIB.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2016/10/10/450bf11d-8554-442b-b181-7d7765eea828/ENCFF698YIB.fastq.gz low read length, mixed read lengths ENCFF837MEC fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_4 25 paired-ended 2 /files/ENCFF698YIB/ 773181990 Bradley Bernstein, Broad 8ee75d18bcaa9b183042b13cd59efa0f https://www.encodeproject.org/files/ENCFF837MEC/@@download/ENCFF837MEC.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2016/10/10/f93e94bd-99eb-468b-9b69-b5ddbcf4ade8/ENCFF837MEC.fastq.gz low read length, mixed read lengths ENCFF635VQA fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_5 36 single-ended 707211002 Bradley Bernstein, Broad ec48580e5bdf10b1307f5021ba91991e SRA:SRR5331391 https://www.encodeproject.org/files/ENCFF635VQA/@@download/ENCFF635VQA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/0f7f1067-dd8b-42d0-a094-6e6992bc5b14/ENCFF635VQA.fastq.gz low read length, mixed read lengths ENCFF064XIS fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_7 36 single-ended 364504177 Bradley Bernstein, Broad 7d231933878a94f6e8113d35ef3681af SRA:SRR5331393 https://www.encodeproject.org/files/ENCFF064XIS/@@download/ENCFF064XIS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/6e1b2014-8718-4497-be13-47a0728ef234/ENCFF064XIS.fastq.gz low read length, mixed read lengths ENCFF472QMD fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_5 36 single-ended 718748049 Bradley Bernstein, Broad fbd448d302176fa86842cde262ec24ab SRA:SRR5331392 https://www.encodeproject.org/files/ENCFF472QMD/@@download/ENCFF472QMD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/2e454e8f-75c7-42ce-b462-bfc84e9f2770/ENCFF472QMD.fastq.gz low read length, mixed read lengths ENCFF138KKQ fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_6 36 single-ended 745392259 Bradley Bernstein, Broad abbe4ba5be667292c35b58b3855526f4 SRA:SRR5331380 https://www.encodeproject.org/files/ENCFF138KKQ/@@download/ENCFF138KKQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/f5222f7b-77b0-4916-8c15-7554608cf339/ENCFF138KKQ.fastq.gz low read length, mixed read lengths ENCFF368CYL fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_6 36 single-ended 733369789 Bradley Bernstein, Broad 4c814c7a73e78d37e446512c432f500d SRA:SRR5331381 https://www.encodeproject.org/files/ENCFF368CYL/@@download/ENCFF368CYL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/94c25dda-22be-4e1e-9302-1a218b6a01ec/ENCFF368CYL.fastq.gz low read length, mixed read lengths ENCFF393KUX fastq fastq reads ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_7 36 single-ended 464942118 Bradley Bernstein, Broad 51d7d1311e3116d2871b4a8c60e7db31 SRA:SRR5331394 https://www.encodeproject.org/files/ENCFF393KUX/@@download/ENCFF393KUX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/10/a8791fc7-34ce-4e8e-b1f7-1a442656b7fa/ENCFF393KUX.fastq.gz low read length, mixed read lengths ENCFF401LXB bam bam unfiltered alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 1 1_1 36 /files/ENCFF191QXK/, /files/ENCFF643CGH/, /files/ENCFF036EGF/ 1876944861 ENCODE Processing Pipeline 1f62cbd93b0a75054bdc90651efceac0 https://www.encodeproject.org/files/ENCFF401LXB/@@download/ENCFF401LXB.bam released s3://encode-public/2016/10/29/099dab8f-abb1-478b-a28f-97afc0f618b1/ENCFF401LXB.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF064DDT bam bam alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 1 1_1 36 /files/ENCFF191QXK/, /files/ENCFF643CGH/, /files/ENCFF036EGF/ 1289889440 ENCODE Processing Pipeline 0c3f12d779be48b9f6fb0b1b232c07cc https://www.encodeproject.org/files/ENCFF064DDT/@@download/ENCFF064DDT.bam released s3://encode-public/2016/10/29/65329d89-005a-49c0-87f7-0405afb96b79/ENCFF064DDT.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF452JET bam bam unfiltered alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 3 3_1, 3_2 76 /files/ENCFF809ZPN/, /files/ENCFF164ZWM/, /files/ENCFF643CGH/, /files/ENCFF740ECI/, /files/ENCFF805KPU/ 3584587543 ENCODE Processing Pipeline 281e89d3b228c1c9f9cefcd761734608 https://www.encodeproject.org/files/ENCFF452JET/@@download/ENCFF452JET.bam released s3://encode-public/2016/10/29/6dcfef66-d9f3-4709-b803-19fe837b8688/ENCFF452JET.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF234FUH bam bam alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 3 3_1, 3_2 76 /files/ENCFF809ZPN/, /files/ENCFF164ZWM/, /files/ENCFF643CGH/, /files/ENCFF740ECI/, /files/ENCFF805KPU/ 2991924873 ENCODE Processing Pipeline ff8601fd17ceaef2ab0d2a69705f2e47 https://www.encodeproject.org/files/ENCFF234FUH/@@download/ENCFF234FUH.bam released s3://encode-public/2016/10/29/9dcb95b4-f37b-4d85-a042-6092fab6fc2c/ENCFF234FUH.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF292NRA bam bam alignments hg19 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 5 5_1, 5_2 36 /files/ENCFF000AVR/, /files/ENCFF807MUK/, /files/ENCFF000AVM/ 576836087 ENCODE Processing Pipeline 2ece44c15ecf5ba7ac0ba0a942d3b281 https://www.encodeproject.org/files/ENCFF292NRA/@@download/ENCFF292NRA.bam archived s3://encode-public/2016/10/29/545fdfcb-f62a-4e2a-af05-2ac05c52a296/ENCFF292NRA.bam ENCODE3 hg19 archived low read length, 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mixed read lengths ENCFF727XHW bam bam alignments hg19 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 1 1_1 36 /files/ENCFF191QXK/, /files/ENCFF807MUK/, /files/ENCFF036EGF/ 1290076029 ENCODE Processing Pipeline 2a3f09a537e365bcb4d7f3c0273ff8c5 https://www.encodeproject.org/files/ENCFF727XHW/@@download/ENCFF727XHW.bam released s3://encode-public/2016/10/29/6c0431b3-a90f-4f63-8bb8-16bbd3fb5e8b/ENCFF727XHW.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF790CGF bam bam alignments hg19 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 4 4_1 76 /files/ENCFF689EIT/, /files/ENCFF807MUK/, /files/ENCFF663FLW/ 1706772736 ENCODE Processing Pipeline 83e7601dece227a74ea72e88a2246bfa https://www.encodeproject.org/files/ENCFF790CGF/@@download/ENCFF790CGF.bam released s3://encode-public/2016/10/29/0b17e1e5-fba0-4845-9cdd-700867980ceb/ENCFF790CGF.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF447DQQ bam bam unfiltered alignments hg19 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_1, 2_2, 2_3, 2_5, 2_6, 2_7 36 /files/ENCFF138KKQ/, /files/ENCFF064XIS/, /files/ENCFF763DAQ/, /files/ENCFF393KUX/, /files/ENCFF659UFR/, /files/ENCFF807MUK/, /files/ENCFF303YPV/, /files/ENCFF472QMD/, /files/ENCFF635VQA/, /files/ENCFF368CYL/, /files/ENCFF508ZFI/, /files/ENCFF145GCJ/ 7175663473 ENCODE Processing Pipeline e120862c8fc68fe1b1246522c6d1d4be https://www.encodeproject.org/files/ENCFF447DQQ/@@download/ENCFF447DQQ.bam released s3://encode-public/2016/10/31/6fd17862-03b5-4396-9f0f-52a63c33fd0f/ENCFF447DQQ.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF243MTV bam bam alignments hg19 ENCSR000AMI Control ChIP-seq 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2011-02-10 ENCODE see document 200-600, 300-600, 300-800 4 4_1 76 /files/ENCFF689EIT/, /files/ENCFF643CGH/, /files/ENCFF663FLW/ 2123259006 ENCODE Processing Pipeline 84ff0eb76dc6537d9b636316bfe051d7 https://www.encodeproject.org/files/ENCFF994DDP/@@download/ENCFF994DDP.bam released s3://encode-public/2016/11/03/53712a51-1d51-4e97-b176-d571c1bb3c54/ENCFF994DDP.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF027HTR bam bam unfiltered alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF036EGF/, /files/ENCFF191QXK/ 1818357615 ENCODE Processing Pipeline c4e14bba5f4773ac32e07a5faa36d4ba https://www.encodeproject.org/files/ENCFF027HTR/@@download/ENCFF027HTR.bam released s3://encode-public/2020/09/17/c6ffd706-f5d1-44a9-a4ea-0006bf852c5f/ENCFF027HTR.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF853FRF bam bam alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF036EGF/, /files/ENCFF191QXK/ 1409499644 ENCODE Processing Pipeline ab4907b4d09732200d8d7a4e20d1cb0c https://www.encodeproject.org/files/ENCFF853FRF/@@download/ENCFF853FRF.bam released s3://encode-public/2020/09/17/6fa51a7c-4058-4aa8-b9b4-18691b98e5ba/ENCFF853FRF.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF623AJW bam bam alignments GRCh38 ENCSR000AMI Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600, 300-600, 300-800 2 2_1, 2_2, 2_3, 2_5, 2_6, 2_7 36 /files/ENCFF145GCJ/, /files/ENCFF368CYL/, /files/ENCFF138KKQ/, /files/ENCFF303YPV/, /files/ENCFF659UFR/, /files/ENCFF110MCL/, /files/ENCFF472QMD/, /files/ENCFF393KUX/, /files/ENCFF763DAQ/, /files/ENCFF064XIS/, /files/ENCFF635VQA/, /files/ENCFF508ZFI/ 5402831057 ENCODE Processing Pipeline d997e5ee6405b404fee11dbc1e282870 https://www.encodeproject.org/files/ENCFF623AJW/@@download/ENCFF623AJW.bam released s3://encode-public/2020/09/17/4c9bf823-9bac-4588-9a4a-bca079abbf54/ENCFF623AJW.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF592RHD fastq fastq reads ENCSR892ECY Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 215911771 Kevin White, UChicago e74c49330134a53aec3fb0cb85e39a05 https://www.encodeproject.org/files/ENCFF592RHD/@@download/ENCFF592RHD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF240YUE/ released s3://encode-public/2015/07/30/861c51e8-be7b-49a2-af4a-3e32a5809c73/ENCFF592RHD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF600VXQ bam bam alignments ce10 ENCSR892ECY Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF592RHD/ 281781998 Kevin White, UChicago 522f09b339f19cbd76b2ee15378b0b87 https://www.encodeproject.org/files/ENCFF600VXQ/@@download/ENCFF600VXQ.bam released s3://encode-public/2015/08/19/4fc66661-5573-4cf6-b08c-65374ac4c59a/ENCFF600VXQ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF550TYY bigWig bigWig read-depth normalized signal ce10 ENCSR892ECY Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF600VXQ/ 10027485 Kevin White, UChicago 1ad2970f45a96f690768031aeb8e4240 https://www.encodeproject.org/files/ENCFF550TYY/@@download/ENCFF550TYY.bigWig released s3://encode-public/2015/10/02/09b6d584-29ef-4397-9cb1-7a169f6080b5/ENCFF550TYY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF331ZIR bigWig bigWig signal of unique reads ce10 ENCSR892ECY Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF600VXQ/ 10060052 Kevin White, UChicago f5725073b7a5ff1609869d59bccbb63f https://www.encodeproject.org/files/ENCFF331ZIR/@@download/ENCFF331ZIR.bigWig released s3://encode-public/2015/10/02/5fa87531-c78c-4240-af83-d6c0a71d1f05/ENCFF331ZIR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF442ESR bam bam alignments ce11 ENCSR892ECY Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF592RHD/ 282092687 Kevin White, UChicago 6a0e379e0ba65dbfb9c5d8bb29f1941c https://www.encodeproject.org/files/ENCFF442ESR/@@download/ENCFF442ESR.bam released s3://encode-public/2016/01/17/ed64b41f-3871-4964-83a3-d44b67dbf124/ENCFF442ESR.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF468LGF bigWig bigWig signal of unique reads ce11 ENCSR892ECY Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF442ESR/ 10054064 Kevin White, UChicago 371d429562fbdc1eb6b3d22cff0dee34 https://www.encodeproject.org/files/ENCFF468LGF/@@download/ENCFF468LGF.bigWig released s3://encode-public/2016/02/03/04b23042-c322-4fc0-ae7e-5c0b0dcabde2/ENCFF468LGF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF154IIF bigWig bigWig read-depth normalized signal ce11 ENCSR892ECY Control ChIP-seq /worm-donors/ENCDO241VWT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177529/'], '@type': ['Target', 'Item'], 'name': 'F49E8.2-celegans', 'label': 'F49E8.2', '@id': '/targets/F49E8.2-celegans/', 'title': 'F49E8.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c609bfad-eae1-4d57-abb3-c5a21d605bb0', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF442ESR/ 10026771 Kevin White, UChicago 20bce1f3b498149a1c17a1c415a01b16 https://www.encodeproject.org/files/ENCFF154IIF/@@download/ENCFF154IIF.bigWig released s3://encode-public/2016/02/03/6cff8271-da8e-48ea-870a-f35a54b23874/ENCFF154IIF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF778CWY fastq fastq reads ENCSR851JOQ Control ChIP-seq /fly-donors/ENCDO478ELP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40616/'], '@type': ['Target', 'Item'], 'name': 'corto-dmelanogaster', 'label': 'corto', '@id': '/targets/corto-dmelanogaster/', 'title': 'corto (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8899d87f-334d-4406-bc89-1da07a4b3044', 'status': 'released'} dm3 3R 854030 954646 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 834929149 Kevin White, UChicago 89ae66b96f1989ce53b44313eb45fccd https://www.encodeproject.org/files/ENCFF778CWY/@@download/ENCFF778CWY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/ce486b3a-6795-4437-818d-2d0eaee0e1d2/ENCFF778CWY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF519MSI bam bam alignments dm3 ENCSR851JOQ Control ChIP-seq /fly-donors/ENCDO478ELP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40616/'], '@type': ['Target', 'Item'], 'name': 'corto-dmelanogaster', 'label': 'corto', '@id': '/targets/corto-dmelanogaster/', 'title': 'corto (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8899d87f-334d-4406-bc89-1da07a4b3044', 'status': 'released'} dm3 3R 854030 954646 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF778CWY/ 1187735157 Kevin White, UChicago 6fa1c2b47cce6c3b42b4d29041c59417 https://www.encodeproject.org/files/ENCFF519MSI/@@download/ENCFF519MSI.bam released s3://encode-public/2015/08/03/18d34cf7-9de7-4b39-b8ea-a80155bec4f7/ENCFF519MSI.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF488RQD bigWig bigWig read-depth normalized signal dm3 ENCSR851JOQ Control ChIP-seq /fly-donors/ENCDO478ELP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40616/'], '@type': ['Target', 'Item'], 'name': 'corto-dmelanogaster', 'label': 'corto', '@id': '/targets/corto-dmelanogaster/', 'title': 'corto (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8899d87f-334d-4406-bc89-1da07a4b3044', 'status': 'released'} dm3 3R 854030 954646 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF519MSI/ 15215144 Kevin White, UChicago 1de6de0bcf01c9549a9f3c859df5d503 https://www.encodeproject.org/files/ENCFF488RQD/@@download/ENCFF488RQD.bigWig released s3://encode-public/2015/10/05/40fa2ce8-7653-4329-928c-d003b9b99021/ENCFF488RQD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF889TAZ bigWig bigWig signal of unique reads dm3 ENCSR851JOQ Control ChIP-seq /fly-donors/ENCDO478ELP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40616/'], '@type': ['Target', 'Item'], 'name': 'corto-dmelanogaster', 'label': 'corto', '@id': '/targets/corto-dmelanogaster/', 'title': 'corto (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8899d87f-334d-4406-bc89-1da07a4b3044', 'status': 'released'} dm3 3R 854030 954646 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF519MSI/ 15225649 Kevin White, UChicago 1608ea9081d1e115c0ebe43feea555c4 https://www.encodeproject.org/files/ENCFF889TAZ/@@download/ENCFF889TAZ.bigWig released s3://encode-public/2015/10/05/35e1fdac-2050-460c-9a2c-6aae469f631b/ENCFF889TAZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF367MRP bam bam alignments dm6 ENCSR851JOQ Control ChIP-seq /fly-donors/ENCDO478ELP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40616/'], '@type': ['Target', 'Item'], 'name': 'corto-dmelanogaster', 'label': 'corto', '@id': '/targets/corto-dmelanogaster/', 'title': 'corto (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8899d87f-334d-4406-bc89-1da07a4b3044', 'status': 'released'} dm3 3R 854030 954646 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF778CWY/ 1176137613 Kevin White, UChicago b0275d6fcdd2f97deb8e8e6ddb39f571 https://www.encodeproject.org/files/ENCFF367MRP/@@download/ENCFF367MRP.bam released s3://encode-public/2016/04/21/0b7bf284-fbd3-4d40-b635-c7d5a2ff368c/ENCFF367MRP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF861RCD bigWig bigWig signal of unique reads dm6 ENCSR851JOQ Control ChIP-seq /fly-donors/ENCDO478ELP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40616/'], '@type': ['Target', 'Item'], 'name': 'corto-dmelanogaster', 'label': 'corto', '@id': '/targets/corto-dmelanogaster/', 'title': 'corto (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8899d87f-334d-4406-bc89-1da07a4b3044', 'status': 'released'} dm3 3R 854030 954646 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF367MRP/ 17326057 Kevin White, UChicago fe1331b366f67b671dc7cee2d2053bd6 https://www.encodeproject.org/files/ENCFF861RCD/@@download/ENCFF861RCD.bigWig released s3://encode-public/2016/06/21/52fdad81-b8da-4c7c-a4de-577cde1a9e50/ENCFF861RCD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF921LFA bigWig bigWig read-depth normalized signal dm6 ENCSR851JOQ Control ChIP-seq /fly-donors/ENCDO478ELP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40616/'], '@type': ['Target', 'Item'], 'name': 'corto-dmelanogaster', 'label': 'corto', '@id': '/targets/corto-dmelanogaster/', 'title': 'corto (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8899d87f-334d-4406-bc89-1da07a4b3044', 'status': 'released'} dm3 3R 854030 954646 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF367MRP/ 17328491 Kevin White, UChicago 285179f3234b1bb846797a024bf81467 https://www.encodeproject.org/files/ENCFF921LFA/@@download/ENCFF921LFA.bigWig released s3://encode-public/2016/06/21/38cf1333-4030-44f5-9a11-682b7894bbeb/ENCFF921LFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001NTX bigWig bigWig signal mm9 ENCSR125ZWM Control ChIP-seq EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 367668406 Sherman Weissman, Yale 21afe4070b371432f83b06c2f1d58c19 https://www.encodeproject.org/files/ENCFF001NTX/@@download/ENCFF001NTX.bigWig archived s3://encode-public/2011/04/29/d657e09c-9c2a-4894-8ab9-543a326cf78e/ENCFF001NTX.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read length ENCFF001NTM fastq fastq reads ENCSR125ZWM Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 36 single-ended 913289068 Sherman Weissman, Yale 44e036fc1848140df04974b94ca5d2c3 https://www.encodeproject.org/files/ENCFF001NTM/@@download/ENCFF001NTM.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/04/29/d862384c-d7b1-494e-90d1-9367b3442e96/ENCFF001NTM.fastq.gz mild to moderate bottlenecking, low read length ENCFF001NTP fastq fastq reads ENCSR125ZWM Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 36 single-ended 1228087096 Sherman Weissman, Yale d0e286aad5f5a3840382b24c83cc6da3 https://www.encodeproject.org/files/ENCFF001NTP/@@download/ENCFF001NTP.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/04/29/6e7a1a92-176a-4ed1-8fd2-5f7a759c5db0/ENCFF001NTP.fastq.gz mild to moderate bottlenecking, low read length ENCFF001NTR bam bam alignments mm9 ENCSR125ZWM Control ChIP-seq EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 27 964712233 Sherman Weissman, Yale 5c4733267c2290e645aa99e4efc0b437 https://www.encodeproject.org/files/ENCFF001NTR/@@download/ENCFF001NTR.bam archived s3://encode-public/2011/04/29/86ee332b-9d4c-4e59-b74c-fc3067f7159b/ENCFF001NTR.bam Lab custom mm9 archived mild to moderate bottlenecking, low read length ENCFF157WIR bam bam unfiltered alignments mm10 ENCSR125ZWM Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTM/, /files/ENCFF001NTP/ 2375525193 ENCODE Processing Pipeline 506c16516493907fb44c31ae6a2a6909 https://www.encodeproject.org/files/ENCFF157WIR/@@download/ENCFF157WIR.bam released s3://encode-public/2016/10/26/840b4921-f331-4200-92b4-760a484f2058/ENCFF157WIR.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length ENCFF063LRW bam bam alignments mm10 ENCSR125ZWM Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTM/, /files/ENCFF001NTP/ 1533474863 ENCODE Processing Pipeline 9f97a5b07907e6a74085b564ffb01904 https://www.encodeproject.org/files/ENCFF063LRW/@@download/ENCFF063LRW.bam released s3://encode-public/2016/10/26/191b5900-d135-4caa-89fe-eede680545f9/ENCFF063LRW.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length ENCFF809QJB bam bam unfiltered alignments mm10 ENCSR125ZWM Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF001NTM/, /files/ENCFF309GLL/, /files/ENCFF001NTP/ 2331872963 ENCODE Processing Pipeline 9976e508bba05721d3ca51a3cab840f3 https://www.encodeproject.org/files/ENCFF809QJB/@@download/ENCFF809QJB.bam released s3://encode-public/2020/11/06/a4364fe2-4345-4dd3-a211-5d6dc55cf552/ENCFF809QJB.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read length ENCFF742LAY bam bam alignments mm10 ENCSR125ZWM Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2011-09-19 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF001NTM/, /files/ENCFF309GLL/, /files/ENCFF001NTP/ 1622911293 ENCODE Processing Pipeline 322a46a9bc24150136c0ed558f2f8e83 https://www.encodeproject.org/files/ENCFF742LAY/@@download/ENCFF742LAY.bam released s3://encode-public/2020/11/06/94f1c65b-40a4-4364-94b2-7d7dad21dab6/ENCFF742LAY.bam ENCODE4 v1.6.1 mm10 released mild to moderate bottlenecking, low read length ENCFF000VRF bam bam alignments hg19 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000VRR/ 257528507 Michael Snyder, Stanford b19df59e70723d19200c4752a1a58763 https://www.encodeproject.org/files/ENCFF000VRF/@@download/ENCFF000VRF.bam archived s3://encode-public/2012/07/01/49316656-9890-42b8-9bc3-0f8a0e5ba5be/ENCFF000VRF.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000VRG bam bam alignments hg19 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000VRP/ 229072670 Michael Snyder, Stanford 3363c3197f5af28d932acb785e8e742f https://www.encodeproject.org/files/ENCFF000VRG/@@download/ENCFF000VRG.bam archived s3://encode-public/2012/07/01/efb7131d-95e4-4b44-86f7-9f578fe0e00f/ENCFF000VRG.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000VRH bigWig bigWig signal hg19 ENCSR000DYL Control ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 295504754 Michael Snyder, Stanford a531f91623ce674f363248ccbc068e8f https://www.encodeproject.org/files/ENCFF000VRH/@@download/ENCFF000VRH.bigWig archived s3://encode-public/2012/07/01/afb30e46-c8e1-423a-a858-c02f67d50811/ENCFF000VRH.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000VRP fastq fastq reads ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 180478781 Michael Snyder, Stanford 944e93f53e275a872d89510f02d78a64 https://www.encodeproject.org/files/ENCFF000VRP/@@download/ENCFF000VRP.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/242c7619-aeaf-4621-b3dd-2a62b8ed1245/ENCFF000VRP.fastq.gz insufficient read length extremely low read depth ENCFF000VRR fastq fastq reads ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 203117259 Michael Snyder, Stanford ca24243889cc88dfb6a9d954aa8290d7 https://www.encodeproject.org/files/ENCFF000VRR/@@download/ENCFF000VRR.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/38403518-d268-45b5-a4a7-8021a3fb768d/ENCFF000VRR.fastq.gz insufficient read length extremely low read depth ENCFF509WVV bam bam unfiltered alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VRR/ 258554752 ENCODE Processing Pipeline 2126df2db09eafdb23773576aa8f8775 https://www.encodeproject.org/files/ENCFF509WVV/@@download/ENCFF509WVV.bam released s3://encode-public/2016/10/26/b79d8fa2-accc-4aef-b3aa-4dd55afb1dd8/ENCFF509WVV.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF068YTL bam bam unfiltered alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000VRP/ 230160809 ENCODE Processing Pipeline e45cee23bef7732e72697412870a25e3 https://www.encodeproject.org/files/ENCFF068YTL/@@download/ENCFF068YTL.bam released s3://encode-public/2016/10/26/df462873-b401-42a8-8809-076c19a94a55/ENCFF068YTL.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF890OWQ bam bam alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000VRP/ 148030896 ENCODE Processing Pipeline 16e4cd7261e97e1a3dfbbcf8098985db https://www.encodeproject.org/files/ENCFF890OWQ/@@download/ENCFF890OWQ.bam released s3://encode-public/2016/10/26/fb2698bb-92a2-44de-bdc4-9946285d719d/ENCFF890OWQ.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF787MRM bam bam alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000VRR/ 166088457 ENCODE Processing Pipeline 4c09158d4b16f1979d6b3363d66a9168 https://www.encodeproject.org/files/ENCFF787MRM/@@download/ENCFF787MRM.bam released s3://encode-public/2016/10/26/c1e6ce04-b8ed-4ea7-84b1-d58621e0dc1b/ENCFF787MRM.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF793QFT bam bam unfiltered alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000VRR/, /files/ENCFF110MCL/ 244976158 ENCODE Processing Pipeline 1750421ecfde563eeb155dc9855f0c36 https://www.encodeproject.org/files/ENCFF793QFT/@@download/ENCFF793QFT.bam released s3://encode-public/2020/10/27/e1d34e5f-de79-452b-8ba9-aa0c0cc9a804/ENCFF793QFT.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF893ZLU bam bam unfiltered alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000VRP/ 218257130 ENCODE Processing Pipeline 4e5f2d6c7afd62a8ffb47a4cc1836d31 https://www.encodeproject.org/files/ENCFF893ZLU/@@download/ENCFF893ZLU.bam released s3://encode-public/2020/10/27/baeb963f-bd79-42a3-9159-f3ba1719ae79/ENCFF893ZLU.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF345KLD bam bam alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000VRR/, /files/ENCFF110MCL/ 172849228 ENCODE Processing Pipeline bb4561e2ee9cd23770ee8ca8b184add3 https://www.encodeproject.org/files/ENCFF345KLD/@@download/ENCFF345KLD.bam released s3://encode-public/2020/10/27/5bf0a005-d2c2-4f2b-8670-cda73a3a41a5/ENCFF345KLD.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF960INS bam bam alignments GRCh38 ENCSR000DYL Control ChIP-seq /human-donors/ENCDO000ABK/ EFO:0005336 GM10847 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000VRP/ 149057292 ENCODE Processing Pipeline ccf58cdab7a3e2325e5ceb3c8c02196d https://www.encodeproject.org/files/ENCFF960INS/@@download/ENCFF960INS.bam released s3://encode-public/2020/10/27/fa54a425-a0b8-4f6c-9891-f8ebffc694cb/ENCFF960INS.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF000RNA bam bam alignments hg19 ENCSR000DKO Control ChIP-seq EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 36 1551152343 Vishwanath Iyer, UTA b09f98aa75167ac425faee948d1fe94f https://www.encodeproject.org/files/ENCFF000RNA/@@download/ENCFF000RNA.bam archived s3://encode-public/2012/07/26/5ea25e62-efff-4580-93b3-275e8ce6a7a0/ENCFF000RNA.bam Lab custom hg19 archived low read length ENCFF000RNC bigWig bigWig signal hg19 ENCSR000DKO Control ChIP-seq EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 4703572582 Vishwanath Iyer, UTA ec236967dbddff045a95b8762ee6839f https://www.encodeproject.org/files/ENCFF000RNC/@@download/ENCFF000RNC.bigWig archived s3://encode-public/2012/07/26/9ed655ca-945f-47a3-98c7-5a1c53de6591/ENCFF000RNC.bigWig Lab custom hg19 archived low read length ENCFF000RNI fastq fastq reads ENCSR000DKO Control ChIP-seq /human-donors/ENCDO000ACT/ EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1332874423 Vishwanath Iyer, UTA b1fb67288714bb4a83d4f087718c4a6d https://www.encodeproject.org/files/ENCFF000RNI/@@download/ENCFF000RNI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/407f20b1-61b9-41f8-8689-fce98629ab1f/ENCFF000RNI.fastq.gz low read length ENCFF800KVT bam bam unfiltered alignments GRCh38 ENCSR000DKO Control ChIP-seq /human-donors/ENCDO000ACT/ EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RNI/ 1965766313 ENCODE Processing Pipeline 2aee26c147d6b1a73b1535ee3fd17998 https://www.encodeproject.org/files/ENCFF800KVT/@@download/ENCFF800KVT.bam released s3://encode-public/2016/10/26/60c2ca1d-1c27-43d0-bd81-7c1e586d0490/ENCFF800KVT.bam ENCODE3 GRCh38 archived low read length ENCFF509KAJ bam bam alignments GRCh38 ENCSR000DKO Control ChIP-seq /human-donors/ENCDO000ACT/ EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RNI/ 1247412950 ENCODE Processing Pipeline 8e833c9dacb6d1d097bf93f879f5ebc6 https://www.encodeproject.org/files/ENCFF509KAJ/@@download/ENCFF509KAJ.bam released s3://encode-public/2016/10/26/44c9a5e0-5545-48ff-8000-690ff6590c3d/ENCFF509KAJ.bam ENCODE3 GRCh38 archived low read length ENCFF559HMK bam bam unfiltered alignments hg19 ENCSR000DKO Control ChIP-seq /human-donors/ENCDO000ACT/ EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RNI/ 1954376808 ENCODE Processing Pipeline 5032e481406e562580ee5661a30ed43e https://www.encodeproject.org/files/ENCFF559HMK/@@download/ENCFF559HMK.bam released s3://encode-public/2017/04/05/97922391-025f-4597-b7fd-c3b033addcd7/ENCFF559HMK.bam ENCODE3 hg19 archived low read length ENCFF424BXF bam bam alignments hg19 ENCSR000DKO Control ChIP-seq /human-donors/ENCDO000ACT/ EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RNI/ 1248006974 ENCODE Processing Pipeline 7bc06be9c78440aafcb11b646bab0530 https://www.encodeproject.org/files/ENCFF424BXF/@@download/ENCFF424BXF.bam released s3://encode-public/2017/04/05/c4617971-3e3a-40a2-a883-ddb8327b24e2/ENCFF424BXF.bam ENCODE3 hg19 archived low read length ENCFF229KPJ bam bam unfiltered alignments GRCh38 ENCSR000DKO Control ChIP-seq /human-donors/ENCDO000ACT/ EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF000RNI/, /files/ENCFF110MCL/ 1887881417 ENCODE Processing Pipeline b610194abda4b594f5b51970176c7536 https://www.encodeproject.org/files/ENCFF229KPJ/@@download/ENCFF229KPJ.bam released s3://encode-public/2020/09/03/dfe7a430-4bf3-4678-880c-a2e012a3c07e/ENCFF229KPJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF949ZHJ bam bam alignments GRCh38 ENCSR000DKO Control ChIP-seq /human-donors/ENCDO000ACT/ EFO:0002782 H54 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF000RNI/, /files/ENCFF110MCL/ 1387135616 ENCODE Processing Pipeline fba71d3e7ea9f8279dc5b105c85e093e https://www.encodeproject.org/files/ENCFF949ZHJ/@@download/ENCFF949ZHJ.bam released s3://encode-public/2020/09/03/3bf15aaa-655a-4ce2-9a26-b9ed816260a1/ENCFF949ZHJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF817WNO fastq fastq reads ENCSR283AVD Control ChIP-seq /fly-donors/ENCDO095AJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36825/'], '@type': ['Target', 'Item'], 'name': 'CG4282-dmelanogaster', 'label': 'CG4282', '@id': '/targets/CG4282-dmelanogaster/', 'title': 'CG4282 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1da798e-00d7-4cc5-b8c2-39ee64460627', 'status': 'released'} dm3 2R 12196555 12221903 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 254712396 Kevin White, UChicago 6fc68844a359de3072beb96776cc0bcd https://www.encodeproject.org/files/ENCFF817WNO/@@download/ENCFF817WNO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/6933fb79-72b6-42ef-b20f-9c87f4cc59a0/ENCFF817WNO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF571FCX bam bam alignments dm3 ENCSR283AVD Control ChIP-seq /fly-donors/ENCDO095AJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36825/'], '@type': ['Target', 'Item'], 'name': 'CG4282-dmelanogaster', 'label': 'CG4282', '@id': '/targets/CG4282-dmelanogaster/', 'title': 'CG4282 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1da798e-00d7-4cc5-b8c2-39ee64460627', 'status': 'released'} dm3 2R 12196555 12221903 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF817WNO/ 367419831 Kevin White, UChicago e1702f0c1b501239a4fe7e2b228de2cf https://www.encodeproject.org/files/ENCFF571FCX/@@download/ENCFF571FCX.bam released s3://encode-public/2015/08/03/a080b9f0-2c40-4780-b2a7-2eb521041e76/ENCFF571FCX.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF141OHU bigWig bigWig signal of unique reads dm3 ENCSR283AVD Control ChIP-seq /fly-donors/ENCDO095AJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36825/'], '@type': ['Target', 'Item'], 'name': 'CG4282-dmelanogaster', 'label': 'CG4282', '@id': '/targets/CG4282-dmelanogaster/', 'title': 'CG4282 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1da798e-00d7-4cc5-b8c2-39ee64460627', 'status': 'released'} dm3 2R 12196555 12221903 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF571FCX/ 15156624 Kevin White, UChicago e734c70bb6a987b42d4b5163ce34351d https://www.encodeproject.org/files/ENCFF141OHU/@@download/ENCFF141OHU.bigWig released s3://encode-public/2015/10/05/8dfac99d-a2d5-42e6-8f8e-21c3ddf0e106/ENCFF141OHU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF026IZR bigWig bigWig read-depth normalized signal dm3 ENCSR283AVD Control ChIP-seq /fly-donors/ENCDO095AJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36825/'], '@type': ['Target', 'Item'], 'name': 'CG4282-dmelanogaster', 'label': 'CG4282', '@id': '/targets/CG4282-dmelanogaster/', 'title': 'CG4282 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1da798e-00d7-4cc5-b8c2-39ee64460627', 'status': 'released'} dm3 2R 12196555 12221903 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF571FCX/ 15191829 Kevin White, UChicago 42ef7b6dfeb857c25b9661a4e9e0169b https://www.encodeproject.org/files/ENCFF026IZR/@@download/ENCFF026IZR.bigWig released s3://encode-public/2015/10/05/866964ff-4c75-4460-9fea-2125874163c4/ENCFF026IZR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF213EAF bam bam alignments dm6 ENCSR283AVD Control ChIP-seq /fly-donors/ENCDO095AJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36825/'], '@type': ['Target', 'Item'], 'name': 'CG4282-dmelanogaster', 'label': 'CG4282', '@id': '/targets/CG4282-dmelanogaster/', 'title': 'CG4282 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1da798e-00d7-4cc5-b8c2-39ee64460627', 'status': 'released'} dm3 2R 12196555 12221903 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF817WNO/ 366460306 Kevin White, UChicago 2a1d727848160321e1528935781188d5 https://www.encodeproject.org/files/ENCFF213EAF/@@download/ENCFF213EAF.bam released s3://encode-public/2016/04/21/7445856f-e59f-4d1f-8998-9536b9779347/ENCFF213EAF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF093TDY bigWig bigWig signal of unique reads dm6 ENCSR283AVD Control ChIP-seq /fly-donors/ENCDO095AJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36825/'], '@type': ['Target', 'Item'], 'name': 'CG4282-dmelanogaster', 'label': 'CG4282', '@id': '/targets/CG4282-dmelanogaster/', 'title': 'CG4282 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1da798e-00d7-4cc5-b8c2-39ee64460627', 'status': 'released'} dm3 2R 12196555 12221903 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF213EAF/ 17241853 Kevin White, UChicago b8dd1f9f82c60762db15ad60220a54de https://www.encodeproject.org/files/ENCFF093TDY/@@download/ENCFF093TDY.bigWig released s3://encode-public/2016/06/20/34fe5147-403f-4443-86eb-4dfc7a4ac845/ENCFF093TDY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF896JZW bigWig bigWig read-depth normalized signal dm6 ENCSR283AVD Control ChIP-seq /fly-donors/ENCDO095AJK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36825/'], '@type': ['Target', 'Item'], 'name': 'CG4282-dmelanogaster', 'label': 'CG4282', '@id': '/targets/CG4282-dmelanogaster/', 'title': 'CG4282 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1da798e-00d7-4cc5-b8c2-39ee64460627', 'status': 'released'} dm3 2R 12196555 12221903 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF213EAF/ 17311817 Kevin White, UChicago 215c91f603cc4ad01fb8f23d6de69f1d https://www.encodeproject.org/files/ENCFF896JZW/@@download/ENCFF896JZW.bigWig released s3://encode-public/2016/06/20/d17ae9d2-889c-41da-8e65-cfdb34cd62a1/ENCFF896JZW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF574RPR fastq fastq reads ENCSR230GUY Control ChIP-seq /fly-donors/ENCDO957EKW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33496/'], '@type': ['Target', 'Item'], 'name': 'lilli-dmelanogaster', 'label': 'lilli', '@id': '/targets/lilli-dmelanogaster/', 'title': 'lilli (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d64185d-97d8-48b9-b7e5-968745bd7807', 'status': 'released'} dm3 2L 2866517 2968710 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 639713905 Kevin White, UChicago a3b8310985957061fce115d5cbfe603c https://www.encodeproject.org/files/ENCFF574RPR/@@download/ENCFF574RPR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f8c6747f-8916-4cd0-b80b-609c9b8fe97e/ENCFF574RPR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF048WTQ bam bam alignments dm3 ENCSR230GUY Control ChIP-seq /fly-donors/ENCDO957EKW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33496/'], '@type': ['Target', 'Item'], 'name': 'lilli-dmelanogaster', 'label': 'lilli', '@id': '/targets/lilli-dmelanogaster/', 'title': 'lilli (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d64185d-97d8-48b9-b7e5-968745bd7807', 'status': 'released'} dm3 2L 2866517 2968710 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF574RPR/ 943008029 Kevin White, UChicago 9b161d9a581fc3861062e0687b8a58e2 https://www.encodeproject.org/files/ENCFF048WTQ/@@download/ENCFF048WTQ.bam released s3://encode-public/2015/08/05/77904bd8-6094-45e0-8f60-c703b8296314/ENCFF048WTQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF352NZT bigWig bigWig signal of unique reads dm3 ENCSR230GUY Control ChIP-seq /fly-donors/ENCDO957EKW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33496/'], '@type': ['Target', 'Item'], 'name': 'lilli-dmelanogaster', 'label': 'lilli', '@id': '/targets/lilli-dmelanogaster/', 'title': 'lilli (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d64185d-97d8-48b9-b7e5-968745bd7807', 'status': 'released'} dm3 2L 2866517 2968710 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF048WTQ/ 15340228 Kevin White, UChicago 692a4e559a5e700c849e79356b43987e https://www.encodeproject.org/files/ENCFF352NZT/@@download/ENCFF352NZT.bigWig released s3://encode-public/2015/10/05/83aa01d6-de35-482c-8206-91bb564784de/ENCFF352NZT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF416MIF bigWig bigWig read-depth normalized signal dm3 ENCSR230GUY Control ChIP-seq /fly-donors/ENCDO957EKW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33496/'], '@type': ['Target', 'Item'], 'name': 'lilli-dmelanogaster', 'label': 'lilli', '@id': '/targets/lilli-dmelanogaster/', 'title': 'lilli (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d64185d-97d8-48b9-b7e5-968745bd7807', 'status': 'released'} dm3 2L 2866517 2968710 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF048WTQ/ 15347651 Kevin White, UChicago 6e170b0371ccfd29431aecbceebb8d4f https://www.encodeproject.org/files/ENCFF416MIF/@@download/ENCFF416MIF.bigWig released s3://encode-public/2015/10/05/58ded8f5-ba74-4cb6-8078-697e24929776/ENCFF416MIF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF526AFL bam bam alignments dm6 ENCSR230GUY Control ChIP-seq /fly-donors/ENCDO957EKW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33496/'], '@type': ['Target', 'Item'], 'name': 'lilli-dmelanogaster', 'label': 'lilli', '@id': '/targets/lilli-dmelanogaster/', 'title': 'lilli (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d64185d-97d8-48b9-b7e5-968745bd7807', 'status': 'released'} dm3 2L 2866517 2968710 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF574RPR/ 939088775 Kevin White, UChicago a2fddd7744ede0b694e6989beb1e2afa https://www.encodeproject.org/files/ENCFF526AFL/@@download/ENCFF526AFL.bam released s3://encode-public/2016/04/20/e2800d80-fbef-4913-a975-aa9cedb174f4/ENCFF526AFL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF050SYF bigWig bigWig signal of unique reads dm6 ENCSR230GUY Control ChIP-seq /fly-donors/ENCDO957EKW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33496/'], '@type': ['Target', 'Item'], 'name': 'lilli-dmelanogaster', 'label': 'lilli', '@id': '/targets/lilli-dmelanogaster/', 'title': 'lilli (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d64185d-97d8-48b9-b7e5-968745bd7807', 'status': 'released'} dm3 2L 2866517 2968710 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF526AFL/ 17444744 Kevin White, UChicago 48567406a600872d81a93bd575764130 https://www.encodeproject.org/files/ENCFF050SYF/@@download/ENCFF050SYF.bigWig released s3://encode-public/2016/06/21/2b145d64-8dcb-43c8-986a-868fc3c4f3eb/ENCFF050SYF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF212PTI bigWig bigWig read-depth normalized signal dm6 ENCSR230GUY Control ChIP-seq /fly-donors/ENCDO957EKW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33496/'], '@type': ['Target', 'Item'], 'name': 'lilli-dmelanogaster', 'label': 'lilli', '@id': '/targets/lilli-dmelanogaster/', 'title': 'lilli (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d64185d-97d8-48b9-b7e5-968745bd7807', 'status': 'released'} dm3 2L 2866517 2968710 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF526AFL/ 17450560 Kevin White, UChicago 3d77c0ff0f092328aedce16c1fe70721 https://www.encodeproject.org/files/ENCFF212PTI/@@download/ENCFF212PTI.bigWig released s3://encode-public/2016/06/21/0be17ddc-f1dd-49fb-a23e-c275484ef80c/ENCFF212PTI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF479UJN fastq fastq reads ENCSR626UBE Control ChIP-seq /fly-donors/ENCDO703BMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32543/'], '@type': ['Target', 'Item'], 'name': 'Myb-dmelanogaster', 'label': 'Myb', '@id': '/targets/Myb-dmelanogaster/', 'title': 'Myb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d5ce959-0da4-41f9-ba06-03579af7f18c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 431557551 Kevin White, UChicago 8d1743e2ff76004b0fd6ab03d021fe74 https://www.encodeproject.org/files/ENCFF479UJN/@@download/ENCFF479UJN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/8700b76a-da07-4012-99c2-77d82bcd3fae/ENCFF479UJN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF167BST bam bam alignments dm3 ENCSR626UBE Control ChIP-seq /fly-donors/ENCDO703BMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32543/'], '@type': ['Target', 'Item'], 'name': 'Myb-dmelanogaster', 'label': 'Myb', '@id': '/targets/Myb-dmelanogaster/', 'title': 'Myb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d5ce959-0da4-41f9-ba06-03579af7f18c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF479UJN/ 638538395 Kevin White, UChicago 9ccf052127bbd7f4c1c1ed7a990e69eb https://www.encodeproject.org/files/ENCFF167BST/@@download/ENCFF167BST.bam released s3://encode-public/2015/08/03/7bf9d9b7-71bd-4d52-a290-3920a4a96a7c/ENCFF167BST.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF184ZRD bigWig bigWig signal of unique reads dm3 ENCSR626UBE Control ChIP-seq /fly-donors/ENCDO703BMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32543/'], '@type': ['Target', 'Item'], 'name': 'Myb-dmelanogaster', 'label': 'Myb', '@id': '/targets/Myb-dmelanogaster/', 'title': 'Myb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d5ce959-0da4-41f9-ba06-03579af7f18c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF167BST/ 15348703 Kevin White, UChicago f8ad425376fafefd6f83033ade28bfc6 https://www.encodeproject.org/files/ENCFF184ZRD/@@download/ENCFF184ZRD.bigWig released s3://encode-public/2015/10/06/6a0b31ff-8584-494e-8f20-c9f413c9c7dc/ENCFF184ZRD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF836TTS bigWig bigWig read-depth normalized signal dm3 ENCSR626UBE Control ChIP-seq /fly-donors/ENCDO703BMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32543/'], '@type': ['Target', 'Item'], 'name': 'Myb-dmelanogaster', 'label': 'Myb', '@id': '/targets/Myb-dmelanogaster/', 'title': 'Myb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d5ce959-0da4-41f9-ba06-03579af7f18c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF167BST/ 15357280 Kevin White, UChicago db3dd7a3afd4e2de0d951cb5016ac09e https://www.encodeproject.org/files/ENCFF836TTS/@@download/ENCFF836TTS.bigWig released s3://encode-public/2015/10/06/ac535755-ca70-4be0-a18e-126fb0f1a6dc/ENCFF836TTS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF698DYU bam bam alignments dm6 ENCSR626UBE Control ChIP-seq /fly-donors/ENCDO703BMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32543/'], '@type': ['Target', 'Item'], 'name': 'Myb-dmelanogaster', 'label': 'Myb', '@id': '/targets/Myb-dmelanogaster/', 'title': 'Myb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d5ce959-0da4-41f9-ba06-03579af7f18c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF479UJN/ 636894100 Kevin White, UChicago 7a4b09e5bb634da3219b15e71ed2fe19 https://www.encodeproject.org/files/ENCFF698DYU/@@download/ENCFF698DYU.bam released s3://encode-public/2016/04/22/86dad375-fe93-4fa8-94e5-1333a4f19d0f/ENCFF698DYU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF401OCS bigWig bigWig signal of unique reads dm6 ENCSR626UBE Control ChIP-seq /fly-donors/ENCDO703BMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32543/'], '@type': ['Target', 'Item'], 'name': 'Myb-dmelanogaster', 'label': 'Myb', '@id': '/targets/Myb-dmelanogaster/', 'title': 'Myb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d5ce959-0da4-41f9-ba06-03579af7f18c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF698DYU/ 17471786 Kevin White, UChicago a508adf6cf349cdb0e5e106db55e11e1 https://www.encodeproject.org/files/ENCFF401OCS/@@download/ENCFF401OCS.bigWig released s3://encode-public/2016/06/21/2822a0c4-94b8-4c78-8213-e83f822a7b14/ENCFF401OCS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF071KIL bigWig bigWig read-depth normalized signal dm6 ENCSR626UBE Control ChIP-seq /fly-donors/ENCDO703BMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32543/'], '@type': ['Target', 'Item'], 'name': 'Myb-dmelanogaster', 'label': 'Myb', '@id': '/targets/Myb-dmelanogaster/', 'title': 'Myb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d5ce959-0da4-41f9-ba06-03579af7f18c', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF698DYU/ 17468373 Kevin White, UChicago 3b1694b3176c6fa0fc64c8bf94ef386e https://www.encodeproject.org/files/ENCFF071KIL/@@download/ENCFF071KIL.bigWig released s3://encode-public/2016/06/21/9d83c847-a773-47b4-9510-2d1a91fb86c0/ENCFF071KIL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF169TIB fastq fastq reads ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1 36 single-ended 713235510 Bradley Bernstein, Broad 54d6532e47ed78e9171c720ff97456dc SRA:SRR5331508 https://www.encodeproject.org/files/ENCFF169TIB/@@download/ENCFF169TIB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/10/24/0eb68a14-2c4b-418f-a95a-6ba21bd71bc5/ENCFF169TIB.fastq.gz low read length, mixed read lengths ENCFF630PTQ fastq fastq reads ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_2 36 single-ended 805906199 Bradley Bernstein, Broad 574bdf230efd175a475e56944b944caf SRA:SRR5331512 https://www.encodeproject.org/files/ENCFF630PTQ/@@download/ENCFF630PTQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/10/24/43654216-4081-4cb3-be15-89440fa5c42c/ENCFF630PTQ.fastq.gz low read length, mixed read lengths ENCFF137UFY fastq fastq reads ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 single-ended 2719018775 Bradley Bernstein, Broad 9a2d62a8160b5281df66415a24cc5515 SRA:SRR5331511 https://www.encodeproject.org/files/ENCFF137UFY/@@download/ENCFF137UFY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/10/25/d3ff41a3-7746-42b4-b4ff-6b6d66472294/ENCFF137UFY.fastq.gz low read length, mixed read lengths ENCFF789CXR bam bam unfiltered alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1, 1_2 36 /files/ENCFF169TIB/, /files/ENCFF466ORS/, /files/ENCFF910KYS/, /files/ENCFF110MCL/, /files/ENCFF630PTQ/ 3465052394 ENCODE Processing Pipeline 819b6adb4ad0fa1d50b1a78ac0503615 https://www.encodeproject.org/files/ENCFF789CXR/@@download/ENCFF789CXR.bam released s3://encode-public/2020/09/17/7580cc89-8df9-4f81-a989-a30931f195bf/ENCFF789CXR.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF872XUV fastq fastq reads ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 3 3_1 25 paired-ended 2 /files/ENCFF349PCE/ 832529195 Bradley Bernstein, Broad 15d01ec0d8843f6f60367fec1bf30ec5 https://www.encodeproject.org/files/ENCFF872XUV/@@download/ENCFF872XUV.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2015/12/18/8c077304-6f27-401f-91c7-1d643b24613e/ENCFF872XUV.fastq.gz low read length, mixed read lengths ENCFF349PCE fastq fastq reads ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 3 3_1 25 paired-ended 1 /files/ENCFF872XUV/ 822821050 Bradley Bernstein, Broad 256b5834b23eec4602a2a0221e12b2fd https://www.encodeproject.org/files/ENCFF349PCE/@@download/ENCFF349PCE.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2015/12/18/580c2487-1327-4ad1-8ac3-d1a03da76652/ENCFF349PCE.fastq.gz low read length, mixed read lengths ENCFF011BPU bam bam alignments hg19 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF137UFY/ 2449720652 ENCODE Processing Pipeline c8b0bb009fadf4cd0cb9d502ab459739 https://www.encodeproject.org/files/ENCFF011BPU/@@download/ENCFF011BPU.bam released s3://encode-public/2016/01/07/89cc553b-28a2-4b0d-a796-b5af1d432ff0/ENCFF011BPU.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF014IHG bam bam alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF630PTQ/, /files/ENCFF169TIB/ 1601351356 ENCODE Processing Pipeline 48adccabc18d00dda92ef301f5462d01 https://www.encodeproject.org/files/ENCFF014IHG/@@download/ENCFF014IHG.bam archived s3://encode-public/2016/05/06/84554a6e-6298-40de-83f0-c1d6438fc182/ENCFF014IHG.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF438KJC bam bam unfiltered alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF137UFY/ 3465852765 ENCODE Processing Pipeline f9cb4f5b35f687bc38e8382fdfeb21ab https://www.encodeproject.org/files/ENCFF438KJC/@@download/ENCFF438KJC.bam released s3://encode-public/2016/05/06/21bfe6e5-7ba1-435b-be4e-2849c66a4e5d/ENCFF438KJC.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF550VRT bam bam alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF137UFY/ 2448559013 ENCODE Processing Pipeline a0681ad96ffe2ceca2e96168a12aa001 https://www.encodeproject.org/files/ENCFF550VRT/@@download/ENCFF550VRT.bam released s3://encode-public/2016/05/06/40942d4d-a3f8-4955-95d7-fd6c7878f128/ENCFF550VRT.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF466ORS fastq fastq reads ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1 76 single-ended 991533712 Bradley Bernstein, Broad 87b560afb412b1270df6b885e39db1c7 SRA:SRR5331509 https://www.encodeproject.org/files/ENCFF466ORS/@@download/ENCFF466ORS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/09/06/ba811045-db97-4122-bf51-be1bd0079e64/ENCFF466ORS.fastq.gz low read length, mixed read lengths ENCFF910KYS fastq fastq reads ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1 76 single-ended 949244673 Bradley Bernstein, Broad 3a7ec7b878b37a0ce3d4db901e43123e SRA:SRR5331510 https://www.encodeproject.org/files/ENCFF910KYS/@@download/ENCFF910KYS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/09/06/384fdafa-f890-403c-bc89-7cfc89335528/ENCFF910KYS.fastq.gz low read length, mixed read lengths ENCFF552BJI bam bam unfiltered alignments hg19 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF137UFY/ 3445683877 ENCODE Processing Pipeline 6ba94df1a4d75988be458817fa5237e9 https://www.encodeproject.org/files/ENCFF552BJI/@@download/ENCFF552BJI.bam released s3://encode-public/2016/09/20/d1dc19d2-936f-441f-b388-89528c0460ec/ENCFF552BJI.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF910GVQ bam bam unfiltered alignments hg19 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF466ORS/, /files/ENCFF910KYS/, /files/ENCFF630PTQ/, /files/ENCFF169TIB/ 3534069558 ENCODE Processing Pipeline d39329b61dce72f1c7b6dee2ed32fffa https://www.encodeproject.org/files/ENCFF910GVQ/@@download/ENCFF910GVQ.bam released s3://encode-public/2016/09/27/8bad11ee-26c3-47a0-bfdc-833646b098a0/ENCFF910GVQ.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF824DBS bam bam alignments hg19 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF466ORS/, /files/ENCFF910KYS/, /files/ENCFF630PTQ/, /files/ENCFF169TIB/ 2506539919 ENCODE Processing Pipeline 175deda654fb916d744cfcf62e67b776 https://www.encodeproject.org/files/ENCFF824DBS/@@download/ENCFF824DBS.bam released s3://encode-public/2016/09/27/14ef67e3-9d57-4e5f-b5bf-0707bc36215b/ENCFF824DBS.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF880UAU bam bam unfiltered alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1, 1_2 36 /files/ENCFF466ORS/, /files/ENCFF910KYS/, /files/ENCFF630PTQ/, /files/ENCFF169TIB/, /files/ENCFF643CGH/ 3558144113 ENCODE Processing Pipeline 432be1aa3bf93c248fb2b1585207eb7d https://www.encodeproject.org/files/ENCFF880UAU/@@download/ENCFF880UAU.bam released s3://encode-public/2016/09/27/acb60201-bcd1-4f57-9f13-bbbe67c896a4/ENCFF880UAU.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF186KKP bam bam alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1, 1_2 36 /files/ENCFF466ORS/, /files/ENCFF910KYS/, /files/ENCFF630PTQ/, /files/ENCFF169TIB/, /files/ENCFF643CGH/ 2505483738 ENCODE Processing Pipeline 56e4a8b14525facf70b6a14dd2513d9b https://www.encodeproject.org/files/ENCFF186KKP/@@download/ENCFF186KKP.bam released s3://encode-public/2016/09/27/d9e9af0a-b70e-4716-998c-d35d0e3eb623/ENCFF186KKP.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF660ZZF bam bam unfiltered alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF137UFY/ 3465852805 ENCODE Processing Pipeline 43031e54462206fdcf39cdbe7adbfeff https://www.encodeproject.org/files/ENCFF660ZZF/@@download/ENCFF660ZZF.bam released s3://encode-public/2020/02/19/e7f528ba-5740-4570-8161-af94f4107c24/ENCFF660ZZF.bam low read length, mixed read lengths ENCFF943ERC bam bam alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF137UFY/ 2448559051 ENCODE Processing Pipeline 72332ea869cef91d7d2d14daf70b14f9 https://www.encodeproject.org/files/ENCFF943ERC/@@download/ENCFF943ERC.bam released s3://encode-public/2020/02/19/ee5a912b-0bb6-4ed3-9db8-fd455484a4bf/ENCFF943ERC.bam low read length, mixed read lengths ENCFF665GOJ bam bam unfiltered alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF137UFY/, /files/ENCFF110MCL/ 3376747098 ENCODE Processing Pipeline c6d256e36742e9a58a70c52ccc2403f5 https://www.encodeproject.org/files/ENCFF665GOJ/@@download/ENCFF665GOJ.bam released s3://encode-public/2020/09/17/0d340d78-27a6-4140-80a4-4c336155862c/ENCFF665GOJ.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF950MLZ bam bam alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 1 1_1, 1_2 36 /files/ENCFF169TIB/, /files/ENCFF466ORS/, /files/ENCFF910KYS/, /files/ENCFF110MCL/, /files/ENCFF630PTQ/ 2663219999 ENCODE Processing Pipeline edd0901aa118834d4bafe1a62afff167 https://www.encodeproject.org/files/ENCFF950MLZ/@@download/ENCFF950MLZ.bam released s3://encode-public/2020/09/17/c31969b8-5791-4fa8-9a0a-59f2a72301da/ENCFF950MLZ.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF901CTP bam bam alignments GRCh38 ENCSR264HOB Control ChIP-seq /human-donors/ENCDO697GBW/ EFO:0005724 MM.1S cell line Homo sapiens DNA 2015-08-03 ENCODE 300-600 2 2_1 36 /files/ENCFF137UFY/, /files/ENCFF110MCL/ 2653310764 ENCODE Processing Pipeline 83e951a1afe07e5ebe5ddbaa63bf90be https://www.encodeproject.org/files/ENCFF901CTP/@@download/ENCFF901CTP.bam released s3://encode-public/2020/09/17/b9ce509d-acea-4e8f-a766-8bf7e0479c9d/ENCFF901CTP.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF000PET bam bam alignments hg19 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line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000PFD/, /files/ENCFF807MUK/ 1153984785 ENCODE Processing Pipeline 6e32eff2c1a1f3d201b49d02cf192465 https://www.encodeproject.org/files/ENCFF044MEQ/@@download/ENCFF044MEQ.bam released s3://encode-public/2016/11/13/927e8770-0ded-4fe3-9580-a5c18b146bc8/ENCFF044MEQ.bam ENCODE3 hg19 archived low read length ENCFF847IEB bam bam alignments GRCh38 ENCSR000BMM Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000PFD/ 1262835252 ENCODE Processing Pipeline 6f1ef3a582695e6bad2acad0f41d7193 https://www.encodeproject.org/files/ENCFF847IEB/@@download/ENCFF847IEB.bam released s3://encode-public/2020/10/28/e40da261-ac9e-4fe9-8dae-eb816092bd1d/ENCFF847IEB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF453CVY bam bam unfiltered alignments GRCh38 ENCSR000BMM Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000PFD/ 2314701072 ENCODE Processing Pipeline 016600b0f735467ba0ea1e22acb4c931 https://www.encodeproject.org/files/ENCFF453CVY/@@download/ENCFF453CVY.bam released s3://encode-public/2020/10/28/66e2314b-5a9c-4dbb-92c7-5193c393b6f1/ENCFF453CVY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF167NYN fastq fastq reads ENCSR939ISJ Control ChIP-seq /worm-donors/ENCDO675BWE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/260030/'], '@type': ['Target', 'Item'], 'name': 'tbx-7-celegans', 'label': 'tbx-7', '@id': 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Control ChIP-seq /worm-donors/ENCDO675BWE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/260030/'], '@type': ['Target', 'Item'], 'name': 'tbx-7-celegans', 'label': 'tbx-7', '@id': '/targets/tbx-7-celegans/', 'title': 'tbx-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '37cf4115-5eee-4df8-85f7-bde21c1437dc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF022CWV/ 9967858 Kevin White, UChicago dbb10f238e5108ecd55bdb12efe12af3 https://www.encodeproject.org/files/ENCFF465EKV/@@download/ENCFF465EKV.bigWig released s3://encode-public/2015/10/02/2e3f4049-ba32-4f65-81a9-4305075b0084/ENCFF465EKV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF633CLO bigWig bigWig signal of unique reads ce10 ENCSR939ISJ Control ChIP-seq /worm-donors/ENCDO675BWE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/260030/'], '@type': ['Target', 'Item'], 'name': 'tbx-7-celegans', 'label': 'tbx-7', '@id': '/targets/tbx-7-celegans/', 'title': 'tbx-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '37cf4115-5eee-4df8-85f7-bde21c1437dc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF022CWV/ 9969474 Kevin White, UChicago de3637f5995f2b329e6b7eab49d89df1 https://www.encodeproject.org/files/ENCFF633CLO/@@download/ENCFF633CLO.bigWig released s3://encode-public/2015/10/02/18098881-1ef8-4536-87c7-2b3a7d1a0e95/ENCFF633CLO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF896IXP bam bam alignments ce11 ENCSR939ISJ Control ChIP-seq /worm-donors/ENCDO675BWE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/260030/'], '@type': ['Target', 'Item'], 'name': 'tbx-7-celegans', 'label': 'tbx-7', '@id': '/targets/tbx-7-celegans/', 'title': 'tbx-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '37cf4115-5eee-4df8-85f7-bde21c1437dc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF167NYN/ 818004862 Kevin White, UChicago 603df06a63f6668819aec135b2105bdc https://www.encodeproject.org/files/ENCFF896IXP/@@download/ENCFF896IXP.bam released s3://encode-public/2016/01/20/950e53be-144f-40ff-8b96-9717b05b5cc0/ENCFF896IXP.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF863DXE bigWig bigWig signal of unique reads ce11 ENCSR939ISJ Control ChIP-seq /worm-donors/ENCDO675BWE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/260030/'], '@type': ['Target', 'Item'], 'name': 'tbx-7-celegans', 'label': 'tbx-7', '@id': '/targets/tbx-7-celegans/', 'title': 'tbx-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '37cf4115-5eee-4df8-85f7-bde21c1437dc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF896IXP/ 9967149 Kevin White, UChicago 26232d9b145081c92830a46f4f755cfa https://www.encodeproject.org/files/ENCFF863DXE/@@download/ENCFF863DXE.bigWig released s3://encode-public/2016/02/03/1942df67-d345-4852-8e59-2b54144e6ece/ENCFF863DXE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF218WFS bigWig bigWig read-depth normalized signal ce11 ENCSR939ISJ Control ChIP-seq /worm-donors/ENCDO675BWE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/260030/'], '@type': ['Target', 'Item'], 'name': 'tbx-7-celegans', 'label': 'tbx-7', '@id': '/targets/tbx-7-celegans/', 'title': 'tbx-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '37cf4115-5eee-4df8-85f7-bde21c1437dc', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF896IXP/ 9963758 Kevin White, UChicago 67d31783b9336c10b04d78cc6eea3fa7 https://www.encodeproject.org/files/ENCFF218WFS/@@download/ENCFF218WFS.bigWig released s3://encode-public/2016/02/03/61dfb738-83f2-4c55-8af5-83ee9fe032b2/ENCFF218WFS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF000WMA fastq fastq reads ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 142460075 Michael Snyder, Stanford e2dd1a70909c6507ba0192d135a06845 https://www.encodeproject.org/files/ENCFF000WMA/@@download/ENCFF000WMA.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/97e71f60-97e2-4ba2-a751-70dfd26f526f/ENCFF000WMA.fastq.gz low read depth insufficient read length extremely low read depth ENCFF000WMD bam bam alignments hg19 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WMA/ 185304454 Michael Snyder, Stanford 92eb0ac5f001d650b8aeee54ba436610 https://www.encodeproject.org/files/ENCFF000WMD/@@download/ENCFF000WMD.bam archived s3://encode-public/2012/07/01/21e02e78-4914-445d-9b28-436cb1e1e53b/ENCFF000WMD.bam Lab custom hg19 archived low read depth insufficient read length extremely low read depth ENCFF000WME bam bam alignments hg19 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WMH/ 272034200 Michael Snyder, Stanford e6beb626e3aa66a6fc5e490e3fcf6228 https://www.encodeproject.org/files/ENCFF000WME/@@download/ENCFF000WME.bam archived s3://encode-public/2012/07/01/abd079af-897f-47dd-8815-2bced8cd11f8/ENCFF000WME.bam Lab custom hg19 archived low read depth insufficient read length extremely low read depth ENCFF000WMF bigWig bigWig signal hg19 ENCSR000EAZ Control ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 444706005 Michael Snyder, Stanford e87545dc2fe0bad84663f74816eb1ad5 https://www.encodeproject.org/files/ENCFF000WMF/@@download/ENCFF000WMF.bigWig archived s3://encode-public/2012/07/01/8b927d01-4669-4f84-9948-3cbcd39209bf/ENCFF000WMF.bigWig Lab custom hg19 archived low read depth insufficient read length extremely low read depth ENCFF000WMG bam bam alignments hg19 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF000WMM/ 839593083 Michael Snyder, Stanford c80fab92d4f47f79ac65a6d40f3b16a0 https://www.encodeproject.org/files/ENCFF000WMG/@@download/ENCFF000WMG.bam archived s3://encode-public/2012/07/01/d05a858f-4dae-4739-aae9-b4d27d0eff7a/ENCFF000WMG.bam Lab custom hg19 archived low read depth insufficient read length extremely low read depth ENCFF000WMH fastq fastq reads ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 214085523 Michael Snyder, Stanford 1f1358a56014b83369d87405c105edc9 https://www.encodeproject.org/files/ENCFF000WMH/@@download/ENCFF000WMH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/67902e67-fe5e-48cc-ad06-f6bb8fd4c147/ENCFF000WMH.fastq.gz low read depth insufficient read length extremely low read depth ENCFF000WMM fastq fastq reads ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 single-ended 651658481 Michael Snyder, Stanford 6c956cbfc45ad84812a9b4127d3bd9f5 https://www.encodeproject.org/files/ENCFF000WMM/@@download/ENCFF000WMM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/3ceeb70a-d54a-49a8-9672-0e2fb256106d/ENCFF000WMM.fastq.gz low read depth insufficient read length extremely low read depth ENCFF720SQZ bam bam unfiltered alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMH/ 273390536 ENCODE Processing Pipeline d29fb70e9266baef203002575446b954 https://www.encodeproject.org/files/ENCFF720SQZ/@@download/ENCFF720SQZ.bam released s3://encode-public/2016/10/26/31c5bd59-fc96-48a9-be69-510a6aaa1f5e/ENCFF720SQZ.bam ENCODE3 GRCh38 archived low read depth insufficient read length extremely low read depth ENCFF457LVV bam bam unfiltered alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF000WMM/, /files/ENCFF643CGH/ 844132522 ENCODE Processing Pipeline b639e3692da0250b3f3a6bf52b81314f https://www.encodeproject.org/files/ENCFF457LVV/@@download/ENCFF457LVV.bam released s3://encode-public/2016/10/26/6832c631-4d26-411b-bd25-dc0339bab2d4/ENCFF457LVV.bam ENCODE3 GRCh38 archived low read depth insufficient read length extremely low read depth ENCFF496PRM bam bam unfiltered alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMA/ 186357244 ENCODE Processing Pipeline 923f2be93ad92b35a7c337d4b7063e72 https://www.encodeproject.org/files/ENCFF496PRM/@@download/ENCFF496PRM.bam released s3://encode-public/2016/10/26/16bdf9c1-7f9a-4777-80df-c34c5c14e363/ENCFF496PRM.bam ENCODE3 GRCh38 archived low read depth insufficient read length extremely low read depth ENCFF456DLN bam bam alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMA/ 116892834 ENCODE Processing Pipeline fe10bb041dfc254fb296fb0a73a4de8d https://www.encodeproject.org/files/ENCFF456DLN/@@download/ENCFF456DLN.bam released s3://encode-public/2016/10/26/49ce59c6-e192-473f-8bd1-ba75bb40f3f7/ENCFF456DLN.bam ENCODE3 GRCh38 archived low read depth insufficient read length extremely low read depth ENCFF229HVL bam bam alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMH/ 176796743 ENCODE Processing Pipeline d48f7bb161a46f94bffe2b3a82252d09 https://www.encodeproject.org/files/ENCFF229HVL/@@download/ENCFF229HVL.bam released s3://encode-public/2016/10/26/fef5550d-b793-4c5a-848a-f3a0c280c58d/ENCFF229HVL.bam ENCODE3 GRCh38 archived low read depth insufficient read length extremely low read depth ENCFF184PLT bam bam alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF000WMM/, /files/ENCFF643CGH/ 515091470 ENCODE Processing Pipeline 0ea99cc4a012a67c6ac8abcf4cb432d4 https://www.encodeproject.org/files/ENCFF184PLT/@@download/ENCFF184PLT.bam released s3://encode-public/2016/10/26/276dd8af-4221-4cbd-8518-cfe8be5b7cb6/ENCFF184PLT.bam ENCODE3 GRCh38 archived low read depth insufficient read length extremely low read depth ENCFF024IKQ bam bam unfiltered alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WMH/, /files/ENCFF110MCL/ 259262222 ENCODE Processing Pipeline 7640071a74f843fdd1320ec538db938f https://www.encodeproject.org/files/ENCFF024IKQ/@@download/ENCFF024IKQ.bam released s3://encode-public/2020/10/27/ae0d721e-e3c8-40bb-8965-a198e0bb763a/ENCFF024IKQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length extremely low read depth ENCFF858GDS bam bam unfiltered alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WMA/, /files/ENCFF110MCL/ 176569361 ENCODE Processing Pipeline cb4a6886d97cee889dc08b00baba199f https://www.encodeproject.org/files/ENCFF858GDS/@@download/ENCFF858GDS.bam released s3://encode-public/2020/10/27/b65c2bf0-acec-4cfd-b571-795de8855de3/ENCFF858GDS.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length extremely low read depth ENCFF574HMK bam bam alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF000WMM/, /files/ENCFF110MCL/ 530144320 ENCODE Processing Pipeline 5dd6c6a57a9be12b92cd4d9f4078b16f https://www.encodeproject.org/files/ENCFF574HMK/@@download/ENCFF574HMK.bam released s3://encode-public/2020/10/27/78b92d9e-365d-498f-b274-3516455d2d49/ENCFF574HMK.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length extremely low read depth ENCFF015QPF bam bam unfiltered alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF000WMM/, /files/ENCFF110MCL/ 798932955 ENCODE Processing Pipeline a89495fa8f8e8fefb6b91e59ae36677d https://www.encodeproject.org/files/ENCFF015QPF/@@download/ENCFF015QPF.bam released s3://encode-public/2020/10/27/c9413e34-4cf8-40cb-b5a4-c048bf42e412/ENCFF015QPF.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length extremely low read depth ENCFF084RDR bam bam alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WMA/, /files/ENCFF110MCL/ 121773254 ENCODE Processing Pipeline 2a307c0e9aa61f46a0ff1ac7a7ee6a8d https://www.encodeproject.org/files/ENCFF084RDR/@@download/ENCFF084RDR.bam released s3://encode-public/2020/10/27/cff81c63-fd98-4c40-afe0-926cee6db00b/ENCFF084RDR.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length extremely low read depth ENCFF313OCU bam bam alignments GRCh38 ENCSR000EAZ Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WMH/, /files/ENCFF110MCL/ 180246849 ENCODE Processing Pipeline 017d8f20bcfa1af14b42f664d9ee9549 https://www.encodeproject.org/files/ENCFF313OCU/@@download/ENCFF313OCU.bam released s3://encode-public/2020/10/27/5a3e56b0-fb63-4c54-a76f-6b7d6e667f27/ENCFF313OCU.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length extremely low read depth ENCFF002AQT fastq fastq reads ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1461537579 Bing Ren, UCSD 118641a97ad8cdaaff4f38fe9e95e92c SRA:SRR3651278 https://www.encodeproject.org/files/ENCFF002AQT/@@download/ENCFF002AQT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/5228923c-eb0b-4223-9caf-a34cc485cc94/ENCFF002AQT.fastq.gz ENCFF002AQX fastq fastq reads ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2462217703 Bing Ren, UCSD 0a46fb9219b77a74246ffe3238f1bb9d SRA:SRR3651277 https://www.encodeproject.org/files/ENCFF002AQX/@@download/ENCFF002AQX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/2e06eb5a-1a7b-4192-b710-14854c88e453/ENCFF002AQX.fastq.gz ENCFF775SAQ bam bam unfiltered alignments mm10-minimal ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQX/ 2780855832 ENCODE Processing Pipeline 44b256fc91b9c18d2abbdd84be433596 https://www.encodeproject.org/files/ENCFF775SAQ/@@download/ENCFF775SAQ.bam archived s3://encode-public/2015/02/09/077f16fa-b1b8-443b-8655-58878e7cab9a/ENCFF775SAQ.bam ENCFF446NKD bam bam unfiltered alignments mm10-minimal ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQT/ 1678445703 ENCODE Processing Pipeline 58b9c0282bf654f6e28033a6a7e70026 https://www.encodeproject.org/files/ENCFF446NKD/@@download/ENCFF446NKD.bam archived s3://encode-public/2015/02/09/7ecc67bc-d475-43a6-a334-cd789579bd75/ENCFF446NKD.bam ENCFF036DBQ bam bam alignments mm10-minimal ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQX/ 1900271614 ENCODE Processing Pipeline 182495b2fff920eda66990dd73e4ddb3 https://www.encodeproject.org/files/ENCFF036DBQ/@@download/ENCFF036DBQ.bam archived s3://encode-public/2015/05/23/6f3aacd1-6b2e-4d6d-8f13-1d68bf3d834d/ENCFF036DBQ.bam ENCFF431MET bam bam alignments mm10-minimal ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQT/ 1201280310 ENCODE Processing Pipeline 4f4574cb7b167f0f18892affe816f534 https://www.encodeproject.org/files/ENCFF431MET/@@download/ENCFF431MET.bam archived s3://encode-public/2015/05/23/ec98bbc9-2c0a-4a81-b7af-23e2e02c97f6/ENCFF431MET.bam ENCFF102BNI bam bam unfiltered alignments mm10 ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQX/ 2783709130 ENCODE Processing Pipeline 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Processing Pipeline 1ca525f4e06b5be00329708747e80c3b https://www.encodeproject.org/files/ENCFF316JOV/@@download/ENCFF316JOV.bam released s3://encode-public/2016/05/20/d251a91f-5fd9-4a2e-8891-1b389e3320b5/ENCFF316JOV.bam ENCODE3 mm10 archived ENCFF683NKA bam bam alignments mm10 ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQX/ 1899709758 ENCODE Processing Pipeline ef85652daad01e147687e2edebd9aa81 https://www.encodeproject.org/files/ENCFF683NKA/@@download/ENCFF683NKA.bam released s3://encode-public/2016/05/20/4d451222-ec56-476c-8e2c-03223277c69e/ENCFF683NKA.bam ENCODE3 mm10 archived ENCFF638AWU bam bam unfiltered alignments mm10 ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQT/ 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/files/ENCFF002AQT/ 917175119 ENCODE Processing Pipeline a3d109ce5c0648e145eee3dec0a6c1d3 https://www.encodeproject.org/files/ENCFF088KYO/@@download/ENCFF088KYO.bam released s3://encode-public/2016/10/03/3f7a1e01-363a-4cc8-a8b4-49bbb62ad4c1/ENCFF088KYO.bam ENCODE3 mm10 archived ENCFF517WIG bam bam alignments mm10 ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQX/ 1445263880 ENCODE Processing Pipeline 2433da7d17bc35f234367f9efb72852e https://www.encodeproject.org/files/ENCFF517WIG/@@download/ENCFF517WIG.bam released s3://encode-public/2016/10/03/95d6897c-6c79-4f3c-a1ff-20017068a526/ENCFF517WIG.bam ENCODE3 mm10 archived ENCFF566NGX bam bam unfiltered alignments mm10 ENCSR066SPF Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 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/human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 500678043 Bradley Bernstein, Broad 26b148a201788be60a2a7d9d83d0c9d6 SRA:SRR16811807 https://www.encodeproject.org/files/ENCFF183SPP/@@download/ENCFF183SPP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a82c682b-0c07-4f21-b4e4-a862081919dc/ENCFF183SPP.fastq.gz ENCFF089JHP fastq fastq reads ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 451467823 Bradley Bernstein, Broad 7ea4954631988fa7c73601fafdf0d4a5 SRA:SRR16811811 https://www.encodeproject.org/files/ENCFF089JHP/@@download/ENCFF089JHP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/8efcd61c-07d1-4427-9f7d-d895aff3cca7/ENCFF089JHP.fastq.gz ENCFF763JAU fastq fastq reads ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 491555756 Bradley Bernstein, Broad 01b32b7afbf9014bfa12bdb2766c7ea8 SRA:SRR16811808 https://www.encodeproject.org/files/ENCFF763JAU/@@download/ENCFF763JAU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a01451ce-d492-4154-969c-cdeca1479086/ENCFF763JAU.fastq.gz ENCFF581WZK fastq fastq reads ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 491953729 Bradley Bernstein, Broad 60cf32bc2a5c5255a32b80e1cdbbae63 SRA:SRR16811809 https://www.encodeproject.org/files/ENCFF581WZK/@@download/ENCFF581WZK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a5e4c20d-001a-460b-b9e1-9e2bb41bab62/ENCFF581WZK.fastq.gz ENCFF244ACQ fastq fastq reads ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 498050796 Bradley Bernstein, Broad cabf54f0d47b969c2f329426ea4396d3 SRA:SRR16811810 https://www.encodeproject.org/files/ENCFF244ACQ/@@download/ENCFF244ACQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/83b3b1ca-c5fb-4a21-ad76-8a908bad4a79/ENCFF244ACQ.fastq.gz ENCFF475LOQ fastq fastq reads ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 443611441 Bradley Bernstein, Broad c713144d497bbddb1fa43ada0732f5a2 SRA:SRR16811812 https://www.encodeproject.org/files/ENCFF475LOQ/@@download/ENCFF475LOQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/3ed59874-209c-408c-943e-bb2eab60810f/ENCFF475LOQ.fastq.gz ENCFF345SDB fastq fastq reads ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 443393605 Bradley Bernstein, Broad 05bb3f845df13a0456deee6863630b2a SRA:SRR16811813 https://www.encodeproject.org/files/ENCFF345SDB/@@download/ENCFF345SDB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/ef0e2d3a-d3c7-4a5a-9b7f-9f83d84bc0f3/ENCFF345SDB.fastq.gz ENCFF256OPU fastq fastq reads ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 449121182 Bradley Bernstein, Broad cf54ca21e57320aa3b0500f754676610 SRA:SRR16811814 https://www.encodeproject.org/files/ENCFF256OPU/@@download/ENCFF256OPU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/1616e9dc-9ff1-4591-89ef-9c48364db166/ENCFF256OPU.fastq.gz ENCFF369WBB bam bam alignments GRCh38 ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF581WZK/, /files/ENCFF089JHP/, /files/ENCFF110MCL/, /files/ENCFF244ACQ/, /files/ENCFF256OPU/, /files/ENCFF345SDB/, /files/ENCFF475LOQ/, /files/ENCFF763JAU/, /files/ENCFF183SPP/ 3072208020 ENCODE Processing Pipeline 82cbb1b46573788e216be3e1dc21456e https://www.encodeproject.org/files/ENCFF369WBB/@@download/ENCFF369WBB.bam released s3://encode-public/2021/09/15/0e179420-ff11-4aed-a2a9-14ba87ad8496/ENCFF369WBB.bam ENCODE4 v1.8.0 GRCh38 released ENCFF749IJS bam bam unfiltered alignments GRCh38 ENCSR535VLV Control ChIP-seq /human-donors/ENCDO999WDR/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF581WZK/, /files/ENCFF089JHP/, /files/ENCFF110MCL/, /files/ENCFF244ACQ/, /files/ENCFF256OPU/, /files/ENCFF345SDB/, /files/ENCFF475LOQ/, /files/ENCFF763JAU/, /files/ENCFF183SPP/ 3666049815 ENCODE Processing Pipeline 691289f52a9b2c424b095743635adb74 https://www.encodeproject.org/files/ENCFF749IJS/@@download/ENCFF749IJS.bam released s3://encode-public/2021/09/15/6c4e0d1d-3733-418e-9bd0-92f2b6009ac5/ENCFF749IJS.bam ENCODE4 v1.8.0 GRCh38 released ENCFF228XTK fastq fastq reads ENCSR801NWY Control ChIP-seq /fly-donors/ENCDO020MHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43727/'], '@type': ['Target', 'Item'], 'name': 'CG1792-dmelanogaster', 'label': 'CG1792', '@id': '/targets/CG1792-dmelanogaster/', 'title': 'CG1792 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d5e383f-472a-463c-9ded-332333d06d31', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 531069036 Kevin White, UChicago 5e7de09cce38b0328db255e682cf68aa https://www.encodeproject.org/files/ENCFF228XTK/@@download/ENCFF228XTK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/16d954ca-bace-4743-967c-f71ba6f10334/ENCFF228XTK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF631LTG bam bam alignments dm3 ENCSR801NWY Control ChIP-seq /fly-donors/ENCDO020MHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43727/'], '@type': ['Target', 'Item'], 'name': 'CG1792-dmelanogaster', 'label': 'CG1792', '@id': '/targets/CG1792-dmelanogaster/', 'title': 'CG1792 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d5e383f-472a-463c-9ded-332333d06d31', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF228XTK/ 785925453 Kevin White, UChicago 465b6a650dd6829ae51ba99b26c10e5a https://www.encodeproject.org/files/ENCFF631LTG/@@download/ENCFF631LTG.bam released s3://encode-public/2015/08/03/13506763-5374-4610-b07c-5c22bf298f8b/ENCFF631LTG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF573YBK bigWig bigWig signal of unique reads dm3 ENCSR801NWY Control ChIP-seq /fly-donors/ENCDO020MHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43727/'], '@type': ['Target', 'Item'], 'name': 'CG1792-dmelanogaster', 'label': 'CG1792', '@id': '/targets/CG1792-dmelanogaster/', 'title': 'CG1792 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d5e383f-472a-463c-9ded-332333d06d31', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF631LTG/ 15377145 Kevin White, UChicago dd58b2d07fddc1829d4753412649c856 https://www.encodeproject.org/files/ENCFF573YBK/@@download/ENCFF573YBK.bigWig released s3://encode-public/2015/10/06/54645b9e-d6ad-48a6-8b04-9e0b8f080424/ENCFF573YBK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF140FGL bigWig bigWig read-depth normalized signal dm3 ENCSR801NWY Control ChIP-seq /fly-donors/ENCDO020MHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43727/'], '@type': ['Target', 'Item'], 'name': 'CG1792-dmelanogaster', 'label': 'CG1792', '@id': '/targets/CG1792-dmelanogaster/', 'title': 'CG1792 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d5e383f-472a-463c-9ded-332333d06d31', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF631LTG/ 15425113 Kevin White, UChicago 85b4c0a981aff4c2d5bd45fc43ef7090 https://www.encodeproject.org/files/ENCFF140FGL/@@download/ENCFF140FGL.bigWig released s3://encode-public/2015/10/06/a4d742af-35b9-4317-8127-b072a9ec257d/ENCFF140FGL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF391CEC bam bam alignments dm6 ENCSR801NWY Control ChIP-seq /fly-donors/ENCDO020MHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43727/'], '@type': ['Target', 'Item'], 'name': 'CG1792-dmelanogaster', 'label': 'CG1792', '@id': '/targets/CG1792-dmelanogaster/', 'title': 'CG1792 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d5e383f-472a-463c-9ded-332333d06d31', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF228XTK/ 783636946 Kevin White, UChicago ccee8f886ed853f2fef28463da880637 https://www.encodeproject.org/files/ENCFF391CEC/@@download/ENCFF391CEC.bam released s3://encode-public/2016/04/21/7c124c0f-d34f-48ab-8676-f2b80d54c244/ENCFF391CEC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF053IUW bigWig bigWig read-depth normalized signal dm6 ENCSR801NWY Control ChIP-seq /fly-donors/ENCDO020MHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43727/'], '@type': ['Target', 'Item'], 'name': 'CG1792-dmelanogaster', 'label': 'CG1792', '@id': '/targets/CG1792-dmelanogaster/', 'title': 'CG1792 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d5e383f-472a-463c-9ded-332333d06d31', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF391CEC/ 17484078 Kevin White, UChicago d86fbe9194c5f72e03287eeb13264fcc https://www.encodeproject.org/files/ENCFF085LFZ/@@download/ENCFF085LFZ.bigWig released s3://encode-public/2016/06/20/c9ef129a-bf61-48e7-8514-c31c2c66b691/ENCFF085LFZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001IER bam bam alignments mm9 ENCSR000AJR Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 50 /files/ENCFF001IEY/ 1275506611 Barbara Wold, Caltech 0d20c88104b76f7d3975ac8b95f1be15 https://www.encodeproject.org/files/ENCFF001IER/@@download/ENCFF001IER.bam archived s3://encode-public/2011/08/11/703b4675-266e-4005-bb32-100ec534e3b0/ENCFF001IER.bam Lab custom mm9 archived low read depth ENCFF001IET bigWig bigWig signal mm9 ENCSR000AJR Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 /files/ENCFF001IER/ 127542519 Barbara Wold, Caltech c40fc3b4f5d782adb1c17d7d1bbc432a https://www.encodeproject.org/files/ENCFF001IET/@@download/ENCFF001IET.bigWig archived s3://encode-public/2011/08/11/521970d3-a610-4ac9-b74e-1ef929be1c02/ENCFF001IET.bigWig Lab custom mm9 archived low read depth ENCFF001IEY fastq fastq reads ENCSR000AJR Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 1 1_1 50 single-ended 1211522755 Barbara Wold, Caltech 2e2a8ec2eb3b6564d7d24185af306b0f https://www.encodeproject.org/files/ENCFF001IEY/@@download/ENCFF001IEY.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/08/11/db454a5c-743e-4f22-b7ec-34d19574a86d/ENCFF001IEY.fastq.gz low read depth ENCFF001IES bam bam alignments mm9 ENCSR000AJR Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 2 2_1 50 /files/ENCFF001IEZ/ 1986183675 Barbara Wold, Caltech c809bebfe7b5ccd98863de56cae1956a https://www.encodeproject.org/files/ENCFF001IES/@@download/ENCFF001IES.bam archived s3://encode-public/2011/08/11/e2dc7b4f-e45d-474f-bd68-5c8a1776b0ca/ENCFF001IES.bam Lab custom mm9 archived low read depth ENCFF001IEW bigWig bigWig signal mm9 ENCSR000AJR Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 2 2_1 /files/ENCFF001IES/ 235580585 Barbara Wold, Caltech 0bc0eb7c2c506b82b42d553faf8505eb https://www.encodeproject.org/files/ENCFF001IEW/@@download/ENCFF001IEW.bigWig archived s3://encode-public/2011/08/11/d1bc5460-acb7-41a1-9551-031edb150a5f/ENCFF001IEW.bigWig Lab custom mm9 archived low read depth ENCFF001IEZ fastq fastq reads ENCSR000AJR Control ChIP-seq /mouse-donors/ENCDO321TZV/ CL:0000187 myocyte in vitro differentiated cells Mus musculus DNA 2011-11-23 ENCODE see document 2 2_1 50 single-ended 1915699037 Barbara Wold, Caltech e1809c850776fb587748530b0d384e3d 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depth ENCFF973RIY bam bam alignments GRCh38 ENCSR000EZG Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000XJE/ 348183686 ENCODE Processing Pipeline ab2302e73a26a0b44384329e6b16ddf9 https://www.encodeproject.org/files/ENCFF973RIY/@@download/ENCFF973RIY.bam released s3://encode-public/2016/10/26/732c6e68-ae83-4e1e-ae6d-f38ee3d0c7c7/ENCFF973RIY.bam ENCODE3 GRCh38 archived insufficient read length, insufficient read depth ENCFF484GNC bam bam unfiltered alignments GRCh38 ENCSR000EZG Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF643CGH/, /files/ENCFF000XJG/ 396558311 ENCODE Processing Pipeline 40cef0211b9cbd5eebd965e1c75359c0 https://www.encodeproject.org/files/ENCFF484GNC/@@download/ENCFF484GNC.bam released 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HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XJD/, /files/ENCFF110MCL/ 386953424 ENCODE Processing Pipeline eaddf645ba3b5d97b8d3c04f37b76b48 https://www.encodeproject.org/files/ENCFF406ODK/@@download/ENCFF406ODK.bam released s3://encode-public/2020/10/27/04b5c81e-df52-4e86-9108-0befc2aeb02d/ENCFF406ODK.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF622PMN bam bam alignments GRCh38 ENCSR000EZG Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XJE/, /files/ENCFF110MCL/ 351784694 ENCODE Processing Pipeline 9b9149080ffc7ba222d714d4a69ddb0d https://www.encodeproject.org/files/ENCFF622PMN/@@download/ENCFF622PMN.bam released s3://encode-public/2020/10/27/2e43fd52-ea8b-4479-9ea3-62df9e76d56e/ENCFF622PMN.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF092YVN bam bam unfiltered alignments GRCh38 ENCSR000EZG Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF000XJG/, /files/ENCFF110MCL/ 375702123 ENCODE Processing Pipeline 562d09e3f70abf95379368ab7b8711e0 https://www.encodeproject.org/files/ENCFF092YVN/@@download/ENCFF092YVN.bam released s3://encode-public/2020/10/27/1c734a83-f0a8-4d52-83ab-640d74028917/ENCFF092YVN.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF849PSC bam bam alignments GRCh38 ENCSR000EZG Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 3 3_1 28 /files/ENCFF000XJG/, /files/ENCFF110MCL/ 234921837 ENCODE Processing Pipeline ddc33322d9e628505b3086db2a82dc22 https://www.encodeproject.org/files/ENCFF849PSC/@@download/ENCFF849PSC.bam released s3://encode-public/2020/10/27/5075c691-f116-44e6-b3cf-d1befab1e7a3/ENCFF849PSC.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length, insufficient read depth ENCFF001HKS bam bam alignments hg19 ENCSR000DTJ Control ChIP-seq /human-donors/ENCDO330AAA/ CL:0000746 cardiac muscle cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HLJ/ 1096046484 John Stamatoyannopoulos, UW 0df7ecde7a43093a50d68fc0ba533357 https://www.encodeproject.org/files/ENCFF001HKS/@@download/ENCFF001HKS.bam archived s3://encode-public/2011/06/25/41fa54cf-7009-46e0-9b2f-e29349ebb8f0/ENCFF001HKS.bam Lab custom hg19 archived low read length ENCFF001HKW bigWig bigWig raw signal hg19 ENCSR000DTJ Control ChIP-seq /human-donors/ENCDO330AAA/ CL:0000746 cardiac muscle cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HKS/ 215723394 John Stamatoyannopoulos, UW df2875ce0f70d60606587348b68fd041 https://www.encodeproject.org/files/ENCFF001HKW/@@download/ENCFF001HKW.bigWig archived s3://encode-public/2011/06/25/9d09ef08-52a3-48c8-b348-3d070a9bf5bf/ENCFF001HKW.bigWig Lab custom hg19 archived low read length ENCFF001HLJ fastq fastq reads ENCSR000DTJ Control ChIP-seq /human-donors/ENCDO330AAA/ CL:0000746 cardiac muscle cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 1163552911 John Stamatoyannopoulos, UW f2edc02055f7423c071f5d432637a834 https://www.encodeproject.org/files/ENCFF001HLJ/@@download/ENCFF001HLJ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/cf41c472-1580-43cf-beb0-1a8e0cb8af94/ENCFF001HLJ.fastq.gz low read length ENCFF293QZV bam bam unfiltered alignments GRCh38 ENCSR000DTJ Control ChIP-seq /human-donors/ENCDO330AAA/ CL:0000746 cardiac muscle cell primary cell Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HLJ/, /files/ENCFF643CGH/ 1391200534 ENCODE Processing Pipeline f6ee47acbec0bc6448ca3f098a2ede42 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Yale f6707b359f57246223d332641a2dcf6d https://www.encodeproject.org/files/ENCFF000WXO/@@download/ENCFF000WXO.bigWig archived s3://encode-public/2010/12/02/ae2a7e11-96cb-4b4a-8a97-32e47479ef03/ENCFF000WXO.bigWig Lab custom hg19 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF000WXP bam bam alignments hg19 ENCSR000EZB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 30 /files/ENCFF000WXT/ 547984092 Sherman Weissman, Yale d8ef3d381188ea5995fecfe959ee951a https://www.encodeproject.org/files/ENCFF000WXP/@@download/ENCFF000WXP.bam archived s3://encode-public/2010/12/02/da42161e-a1ff-47ce-8a5c-6c78672c7473/ENCFF000WXP.bam Lab custom hg19 archived mild to moderate bottlenecking insufficient read length extremely low read depth ENCFF000WXT fastq fastq reads ENCSR000EZB Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2011-10-29 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cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 802242224 John Stamatoyannopoulos, UW f773fc51bc1dd8fcbd737510ee1f909e https://www.encodeproject.org/files/ENCFF001HON/@@download/ENCFF001HON.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/6639590a-a680-4a34-9bbf-0948d2251a75/ENCFF001HON.fastq.gz low read depth, low read length ENCFF437IOA bam bam unfiltered alignments GRCh38 ENCSR000DUI Control ChIP-seq /human-donors/ENCDO232AAA/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HON/ 985612838 ENCODE Processing Pipeline 122f702a57b1737f0b976501e48e6ff9 https://www.encodeproject.org/files/ENCFF437IOA/@@download/ENCFF437IOA.bam released s3://encode-public/2016/08/09/db25058e-4666-4495-a3b2-61b9a5ab95e0/ENCFF437IOA.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF342YSK bam bam alignments GRCh38 ENCSR000DUI Control ChIP-seq /human-donors/ENCDO232AAA/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HON/ 695141633 ENCODE Processing Pipeline 6ba5f6fa1411d1e659e6d2724acef5a7 https://www.encodeproject.org/files/ENCFF342YSK/@@download/ENCFF342YSK.bam released s3://encode-public/2016/08/09/41eaf472-22e9-4f03-ae25-7e70aa097b77/ENCFF342YSK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF904OLV bam bam unfiltered alignments hg19 ENCSR000DUI Control ChIP-seq /human-donors/ENCDO232AAA/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HON/ 979310748 ENCODE Processing Pipeline 8bacdecd3390af08e7002e5e44d8f304 https://www.encodeproject.org/files/ENCFF904OLV/@@download/ENCFF904OLV.bam released s3://encode-public/2016/11/13/5ab56644-0af3-4a60-b819-d62495983c84/ENCFF904OLV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF357OBP bam bam alignments hg19 ENCSR000DUI Control ChIP-seq /human-donors/ENCDO232AAA/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HON/ 695313655 ENCODE Processing Pipeline 7655449b9fb1f976b72ea7fcf2d7e10e https://www.encodeproject.org/files/ENCFF357OBP/@@download/ENCFF357OBP.bam released s3://encode-public/2016/11/13/44e5b094-a12b-4a57-aa39-3a17116bcf93/ENCFF357OBP.bam ENCODE3 hg19 archived low read depth, low read length ENCFF090OUQ bam bam unfiltered alignments GRCh38 ENCSR000DUI Control ChIP-seq /human-donors/ENCDO232AAA/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HON/ 958752644 ENCODE Processing Pipeline 4740043b41ba54bc3248d41eb4394dc1 https://www.encodeproject.org/files/ENCFF090OUQ/@@download/ENCFF090OUQ.bam released s3://encode-public/2020/09/03/0157b8c7-8b1d-447c-8a56-51e7aaf75595/ENCFF090OUQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF068YKS bam bam alignments GRCh38 ENCSR000DUI Control ChIP-seq /human-donors/ENCDO232AAA/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HON/ 761368750 ENCODE Processing Pipeline d6a4fb819000ece107375e007783509f https://www.encodeproject.org/files/ENCFF068YKS/@@download/ENCFF068YKS.bam released s3://encode-public/2020/09/03/6b91e1f2-c115-42ef-b869-44e068cfe398/ENCFF068YKS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF242QDO bigWig bigWig signal of unique reads ce10 ENCSR760TJW Control ChIP-seq /worm-donors/ENCDO253UCA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 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bottlenecking ENCFF094FUE bigWig bigWig read-depth normalized signal ce10 ENCSR760TJW Control ChIP-seq /worm-donors/ENCDO253UCA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178042/'], '@type': ['Target', 'Item'], 'name': 'B0035.1-celegans', 'label': 'B0035.1', '@id': '/targets/B0035.1-celegans/', 'title': 'B0035.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f061cb4d-242f-49fc-a0f8-f6c4e01bcfde', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF268GXT/ 9955625 Kevin White, UChicago 8e82b2122eb872dc4b366199f262e1a0 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genetic modification reagents, mild to moderate bottlenecking ENCFF632ZRX bam bam alignments ce11 ENCSR760TJW Control ChIP-seq /worm-donors/ENCDO253UCA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178042/'], '@type': ['Target', 'Item'], 'name': 'B0035.1-celegans', 'label': 'B0035.1', '@id': '/targets/B0035.1-celegans/', 'title': 'B0035.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f061cb4d-242f-49fc-a0f8-f6c4e01bcfde', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF640RVP/ 834451384 Kevin White, UChicago 9922eb9bcd3de4d636cda48e52f746bc https://www.encodeproject.org/files/ENCFF632ZRX/@@download/ENCFF632ZRX.bam released s3://encode-public/2016/01/16/05ef8316-4c55-4c1f-b379-b33feac8ef80/ENCFF632ZRX.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents, mild to moderate bottlenecking ENCFF320WRQ bigWig bigWig signal of unique reads ce11 ENCSR760TJW Control ChIP-seq /worm-donors/ENCDO253UCA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178042/'], '@type': ['Target', 'Item'], 'name': 'B0035.1-celegans', 'label': 'B0035.1', '@id': '/targets/B0035.1-celegans/', 'title': 'B0035.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f061cb4d-242f-49fc-a0f8-f6c4e01bcfde', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF632ZRX/ 9956566 Kevin White, UChicago 7a7c6b3ae0609c4417d80bef1fb47ea1 https://www.encodeproject.org/files/ENCFF320WRQ/@@download/ENCFF320WRQ.bigWig released s3://encode-public/2016/02/03/7c6812ed-b7ba-45ea-b32e-d4557ef6e2bd/ENCFF320WRQ.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents, mild to moderate bottlenecking ENCFF898FQX bigWig bigWig read-depth normalized signal ce11 ENCSR760TJW Control ChIP-seq /worm-donors/ENCDO253UCA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178042/'], '@type': ['Target', 'Item'], 'name': 'B0035.1-celegans', 'label': 'B0035.1', '@id': '/targets/B0035.1-celegans/', 'title': 'B0035.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'f061cb4d-242f-49fc-a0f8-f6c4e01bcfde', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF632ZRX/ 9953759 Kevin White, UChicago 4400601212b8b43a08c4b5b8a82ab2b1 https://www.encodeproject.org/files/ENCFF898FQX/@@download/ENCFF898FQX.bigWig released s3://encode-public/2016/02/03/ddab7253-caa0-492d-bc57-69b7880e8318/ENCFF898FQX.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents, mild to moderate bottlenecking ENCFF106IEK fastq fastq reads ENCSR626CIE Control ChIP-seq /worm-donors/ENCDO825PSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179603/'], '@type': ['Target', 'Item'], 'name': 'ceh-32-celegans', 'label': 'ceh-32', '@id': '/targets/ceh-32-celegans/', 'title': 'ceh-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261def75-ed1d-4c94-b345-20eb2f46d5f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 705018894 Kevin White, UChicago dc86304143ae4b656d223a7fdf0e3bd3 https://www.encodeproject.org/files/ENCFF106IEK/@@download/ENCFF106IEK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/92595540-5c54-48e8-82e9-0c9dba7f85a1/ENCFF106IEK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF967LZT bam bam alignments ce10 ENCSR626CIE Control ChIP-seq /worm-donors/ENCDO825PSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179603/'], '@type': ['Target', 'Item'], 'name': 'ceh-32-celegans', 'label': 'ceh-32', '@id': '/targets/ceh-32-celegans/', 'title': 'ceh-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261def75-ed1d-4c94-b345-20eb2f46d5f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF106IEK/ 1002378993 Kevin White, UChicago 8c067e12c076b35cbba450d41f5ef147 https://www.encodeproject.org/files/ENCFF967LZT/@@download/ENCFF967LZT.bam released s3://encode-public/2015/08/19/901cecd7-973c-4206-8d33-64e1591db6e8/ENCFF967LZT.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF774TKO bigWig bigWig read-depth normalized signal ce10 ENCSR626CIE Control ChIP-seq /worm-donors/ENCDO825PSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179603/'], '@type': ['Target', 'Item'], 'name': 'ceh-32-celegans', 'label': 'ceh-32', '@id': '/targets/ceh-32-celegans/', 'title': 'ceh-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261def75-ed1d-4c94-b345-20eb2f46d5f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF967LZT/ 9995353 Kevin White, UChicago a3ebc119f4bf18596ab81d2808f2ed4f https://www.encodeproject.org/files/ENCFF774TKO/@@download/ENCFF774TKO.bigWig released s3://encode-public/2015/10/02/43436dd4-5894-481c-9163-6e9fba226021/ENCFF774TKO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF146MXN bigWig bigWig signal of unique reads ce10 ENCSR626CIE Control ChIP-seq /worm-donors/ENCDO825PSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179603/'], '@type': ['Target', 'Item'], 'name': 'ceh-32-celegans', 'label': 'ceh-32', '@id': '/targets/ceh-32-celegans/', 'title': 'ceh-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261def75-ed1d-4c94-b345-20eb2f46d5f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF967LZT/ 9980116 Kevin White, UChicago cfe67ea2b53fb0147d1dcffb4a1c4f76 https://www.encodeproject.org/files/ENCFF146MXN/@@download/ENCFF146MXN.bigWig released s3://encode-public/2015/10/02/b81bff77-b788-408b-b5ad-3e7ca10eab87/ENCFF146MXN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF422MHD bam bam alignments ce11 ENCSR626CIE Control ChIP-seq /worm-donors/ENCDO825PSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179603/'], '@type': ['Target', 'Item'], 'name': 'ceh-32-celegans', 'label': 'ceh-32', '@id': '/targets/ceh-32-celegans/', 'title': 'ceh-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261def75-ed1d-4c94-b345-20eb2f46d5f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF106IEK/ 1003236204 Kevin White, UChicago 2e81dc45ac3beae4b922d6a595e67925 https://www.encodeproject.org/files/ENCFF422MHD/@@download/ENCFF422MHD.bam released s3://encode-public/2016/01/16/0499ff17-37c1-451b-b94d-305c67bce8b6/ENCFF422MHD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF555GJS bigWig bigWig signal of unique reads ce11 ENCSR626CIE Control ChIP-seq /worm-donors/ENCDO825PSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179603/'], '@type': ['Target', 'Item'], 'name': 'ceh-32-celegans', 'label': 'ceh-32', '@id': '/targets/ceh-32-celegans/', 'title': 'ceh-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261def75-ed1d-4c94-b345-20eb2f46d5f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF422MHD/ 9975982 Kevin White, UChicago 37c64ef84f1dac9ff3ec769780c36501 https://www.encodeproject.org/files/ENCFF555GJS/@@download/ENCFF555GJS.bigWig released s3://encode-public/2016/02/03/5e1a21fd-4357-4e8f-a1d6-f207e78466f3/ENCFF555GJS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF135HYW bigWig bigWig read-depth normalized signal ce11 ENCSR626CIE Control ChIP-seq /worm-donors/ENCDO825PSH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179603/'], '@type': ['Target', 'Item'], 'name': 'ceh-32-celegans', 'label': 'ceh-32', '@id': '/targets/ceh-32-celegans/', 'title': 'ceh-32 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '261def75-ed1d-4c94-b345-20eb2f46d5f8', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF422MHD/ 9983369 Kevin White, UChicago d4e253c1997341b31524a7c4aa67be06 https://www.encodeproject.org/files/ENCFF135HYW/@@download/ENCFF135HYW.bigWig released s3://encode-public/2016/02/03/a7265b82-a261-4484-a819-320540484996/ENCFF135HYW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF644FSZ fastq fastq reads ENCSR561RIA Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-03-09 modERN sonication (generic microtip) 1 1_1 50 single-ended 248041158 Kevin White, UChicago 616022b8ac470ae42b66432eecf4e420 https://www.encodeproject.org/files/ENCFF644FSZ/@@download/ENCFF644FSZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF809SKJ/ released s3://encode-public/2015/07/30/8f5f15d2-8896-44e6-887c-a0b4202ef13e/ENCFF644FSZ.fastq.gz missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF228UTZ bam bam alignments ce10 ENCSR561RIA Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-03-09 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF644FSZ/ 322785924 Kevin White, UChicago fa16f57a392f064d673e6f215097ea55 https://www.encodeproject.org/files/ENCFF228UTZ/@@download/ENCFF228UTZ.bam released s3://encode-public/2015/08/07/044b0f0d-03f9-4509-901b-ee8a742dc9a8/ENCFF228UTZ.bam Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF344UBH bigWig bigWig signal of unique reads ce10 ENCSR561RIA Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-03-09 modERN sonication (generic microtip) 1 1_1 /files/ENCFF228UTZ/ 10061364 Kevin White, UChicago 4d450913abc7ceb1217dc6ac76f76642 https://www.encodeproject.org/files/ENCFF344UBH/@@download/ENCFF344UBH.bigWig released s3://encode-public/2015/10/02/75975045-a042-4248-9a5a-83144a67b93a/ENCFF344UBH.bigWig Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF702AUZ bigWig bigWig read-depth normalized signal ce10 ENCSR561RIA Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-03-09 modERN sonication (generic microtip) 1 1_1 /files/ENCFF228UTZ/ 10007123 Kevin White, UChicago 4a781c436e9f9b88a3784a8cff3629a4 https://www.encodeproject.org/files/ENCFF702AUZ/@@download/ENCFF702AUZ.bigWig released s3://encode-public/2015/10/02/75b686c9-8f12-436a-8d63-5f29d6ff5310/ENCFF702AUZ.bigWig Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF923PXS bam bam alignments ce11 ENCSR561RIA Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-03-09 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF644FSZ/ 323167654 Kevin White, UChicago 2fdb9d0b991173aa24aaa61812cd772b https://www.encodeproject.org/files/ENCFF923PXS/@@download/ENCFF923PXS.bam released s3://encode-public/2016/01/20/1bdb3890-8235-4c0b-83e9-d1c00ecc03bf/ENCFF923PXS.bam Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF661NVF bigWig bigWig signal of unique reads ce11 ENCSR561RIA Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-03-09 modERN sonication (generic microtip) 1 1_1 /files/ENCFF923PXS/ 10058226 Kevin White, UChicago 8011aad09c31ae87e8f2bb0eed64f854 https://www.encodeproject.org/files/ENCFF661NVF/@@download/ENCFF661NVF.bigWig released s3://encode-public/2016/02/03/bac79808-3601-4519-9501-f3386e696740/ENCFF661NVF.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF496KFD bigWig bigWig read-depth normalized signal ce11 ENCSR561RIA Control ChIP-seq /worm-donors/ENCDO217IFG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177491/'], '@type': ['Target', 'Item'], 'name': 'rpc-1-celegans', 'label': 'rpc-1', '@id': '/targets/rpc-1-celegans/', 'title': 'rpc-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '63af4ca2-ab2e-4478-ad0d-f7f1ecf7fc22', 'status': 'released'} DNA 2018-03-09 modERN sonication (generic microtip) 1 1_1 /files/ENCFF923PXS/ 10003206 Kevin White, UChicago 7078cd6a08644923bf1624c916dbe46b https://www.encodeproject.org/files/ENCFF496KFD/@@download/ENCFF496KFD.bigWig released s3://encode-public/2016/02/03/29b8c615-fd44-4ecf-8b35-e57a38c45ebd/ENCFF496KFD.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF000WSY bigWig bigWig signal hg19 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 /files/ENCFF000WSZ/ 333428156 Michael Snyder, Stanford eee15d2aaa9be30d2ce018466970c371 https://www.encodeproject.org/files/ENCFF000WSY/@@download/ENCFF000WSY.bigWig archived s3://encode-public/2012/07/01/9b78ce23-fb11-497f-ac67-2cdd45e56d77/ENCFF000WSY.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000WSZ bam bam alignments hg19 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000WUI/ 813636987 Michael Snyder, Stanford 6cfb1c1d846c282e5c9af1812c60dd87 https://www.encodeproject.org/files/ENCFF000WSZ/@@download/ENCFF000WSZ.bam archived s3://encode-public/2012/07/01/75c909d9-ffc8-4449-81f3-ca844cb9d4a0/ENCFF000WSZ.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000WUI fastq fastq reads ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 1899867075 Michael Snyder, Stanford a5d6f9d10a4fd1deaa61e9c7a1d7c198 https://www.encodeproject.org/files/ENCFF000WUI/@@download/ENCFF000WUI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/0a210c26-e35c-4dd8-9be6-36d9149163a6/ENCFF000WUI.fastq.gz mild to moderate bottlenecking, low read length ENCFF599MVB bam bam alignments hg19 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000WUI/ 1309336931 ENCODE Processing Pipeline 1419cf7cd9c4a9081e13ce81e455f806 https://www.encodeproject.org/files/ENCFF599MVB/@@download/ENCFF599MVB.bam released s3://encode-public/2016/08/23/ea7cf665-6525-419b-84b6-0b3035914bea/ENCFF599MVB.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF521TCY bam bam unfiltered alignments hg19 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000WUI/ 2248658242 ENCODE Processing Pipeline 63af43889ff484dd208d8f2168a9c517 https://www.encodeproject.org/files/ENCFF521TCY/@@download/ENCFF521TCY.bam released s3://encode-public/2016/08/23/ec684767-8e0f-4dc6-8cb5-99b191700318/ENCFF521TCY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF722SGB bam bam unfiltered alignments GRCh38 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000WUI/ 2259790584 ENCODE Processing Pipeline f0532f0456afddbb5c5ee12cf132c641 https://www.encodeproject.org/files/ENCFF722SGB/@@download/ENCFF722SGB.bam released s3://encode-public/2016/10/29/5ef73136-1506-493d-bb78-a41336755ec5/ENCFF722SGB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF513EWK bam bam alignments GRCh38 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000WUI/ 1308927227 ENCODE Processing Pipeline 7a2d13c8e6152b76e46996d09f0ca128 https://www.encodeproject.org/files/ENCFF513EWK/@@download/ENCFF513EWK.bam released s3://encode-public/2016/10/29/f15fc249-aea7-459a-841c-cffdda851e22/ENCFF513EWK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF972YCC bam bam alignments GRCh38 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000WUI/, /files/ENCFF110MCL/ 1434870166 ENCODE Processing Pipeline ca98c96fc508dd8b7b61cfe00ac46389 https://www.encodeproject.org/files/ENCFF972YCC/@@download/ENCFF972YCC.bam released s3://encode-public/2020/10/27/12291dc2-73ee-43e4-b1f6-263693255faa/ENCFF972YCC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF320GYA bam bam unfiltered alignments GRCh38 ENCSR000ECG Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000WUI/, /files/ENCFF110MCL/ 2220536757 ENCODE Processing Pipeline 96e2e4c978537b134c48b2620bd6e51c https://www.encodeproject.org/files/ENCFF320GYA/@@download/ENCFF320GYA.bam released s3://encode-public/2020/10/27/4d0f5298-1a82-4de8-b6cc-9349ccb1a9e3/ENCFF320GYA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF384BVR fastq fastq reads ENCSR922EQL Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 single-ended 2399494408 Richard Myers, HAIB c3b506157adc6deb6e6192c069b997f9 SRA:SRR16815627 https://www.encodeproject.org/files/ENCFF384BVR/@@download/ENCFF384BVR.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/06/02/c82bb5f4-2793-4179-99a0-c8ed5599b13b/ENCFF384BVR.fastq.gz mild to moderate bottlenecking ENCFF270WSS bam bam unfiltered alignments GRCh38 ENCSR922EQL Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF384BVR/, /files/ENCFF110MCL/ 2437245871 ENCODE Processing Pipeline 5797be9159651c9af1cca5c0dcb86b68 https://www.encodeproject.org/files/ENCFF270WSS/@@download/ENCFF270WSS.bam released s3://encode-public/2021/07/21/64c84bff-1a53-476e-8f9b-e44a6aa5c42d/ENCFF270WSS.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF602KQD bam bam alignments GRCh38 ENCSR922EQL Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF384BVR/, /files/ENCFF110MCL/ 1329896988 ENCODE Processing Pipeline 60e68605ddcc8f81322c524f45e45cdb https://www.encodeproject.org/files/ENCFF602KQD/@@download/ENCFF602KQD.bam released s3://encode-public/2021/07/21/a97a82b7-3ef2-42d8-ad68-006ce731c983/ENCFF602KQD.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF000VWP bam bam alignments hg19 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF000VXG/ 724663746 Michael Snyder, Stanford 32cebb8364b25dede9263b16a81de4a9 https://www.encodeproject.org/files/ENCFF000VWP/@@download/ENCFF000VWP.bam archived s3://encode-public/2012/07/01/16268e9d-5cb1-4ff9-8b80-06b7e280bca4/ENCFF000VWP.bam Lab custom hg19 archived low read depth insufficient read length, insufficient read depth ENCFF000VWQ bam bam alignments hg19 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000VXH/ 1118042739 Michael Snyder, Stanford f20b8ca4cc9a767ce0bd1dea56f238cc https://www.encodeproject.org/files/ENCFF000VWQ/@@download/ENCFF000VWQ.bam archived s3://encode-public/2012/07/01/0417941a-f78e-4bd3-a9e9-d8129751cc85/ENCFF000VWQ.bam Lab custom hg19 archived low read depth insufficient read length, insufficient read depth ENCFF000VWR bigWig bigWig signal hg19 ENCSR000DZH Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 433741726 Michael Snyder, Stanford ba5a8d799cf97560dbb40b95073cffe5 https://www.encodeproject.org/files/ENCFF000VWR/@@download/ENCFF000VWR.bigWig archived s3://encode-public/2012/07/01/661a2857-a7e1-43b8-b12a-d325cc4f33b3/ENCFF000VWR.bigWig Lab custom hg19 archived low read depth insufficient read length, insufficient read depth ENCFF000VXG fastq fastq reads ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 single-ended 534826321 Michael Snyder, Stanford 159ce5b35ee875412cc28effbed92ad6 https://www.encodeproject.org/files/ENCFF000VXG/@@download/ENCFF000VXG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/730549d0-b1be-4f73-b0b2-a15399ba84ac/ENCFF000VXG.fastq.gz low read depth insufficient read length, insufficient read depth ENCFF000VXH fastq fastq reads ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 single-ended 803363775 Michael Snyder, Stanford 03191d6703d75c18d0a7b9f7d3f6e5c0 https://www.encodeproject.org/files/ENCFF000VXH/@@download/ENCFF000VXH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/dffa657f-2aad-4e7a-b965-a297f861cd3f/ENCFF000VXH.fastq.gz low read depth insufficient read length, insufficient read depth ENCFF730TWO bam bam unfiltered alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000VXG/ 727847284 ENCODE Processing Pipeline aa258f354daa8ede3841b64af1cc33a6 https://www.encodeproject.org/files/ENCFF730TWO/@@download/ENCFF730TWO.bam released s3://encode-public/2016/10/26/791dda7c-d832-4488-a022-1852eb7ca6dd/ENCFF730TWO.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF072AVQ bam bam unfiltered alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000VXH/, /files/ENCFF643CGH/ 1123909881 ENCODE Processing Pipeline c481ea44068035163a72839ee83b7786 https://www.encodeproject.org/files/ENCFF072AVQ/@@download/ENCFF072AVQ.bam released s3://encode-public/2016/10/26/ab034065-23b2-4065-b0b6-f5d5ce1b0e1a/ENCFF072AVQ.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF499CGA bam bam alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF643CGH/, /files/ENCFF000VXG/ 376363023 ENCODE Processing Pipeline 49cdfaf419031f8c3a62f61b00d5792e https://www.encodeproject.org/files/ENCFF499CGA/@@download/ENCFF499CGA.bam released s3://encode-public/2016/10/26/97326967-55be-46eb-83a8-e1432648189d/ENCFF499CGA.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF334OIC bam bam alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000VXH/, /files/ENCFF643CGH/ 610224134 ENCODE Processing Pipeline 2414998392715a56d3f5c839831d5d91 https://www.encodeproject.org/files/ENCFF334OIC/@@download/ENCFF334OIC.bam released s3://encode-public/2016/10/26/52487e22-ecea-4ae3-9411-53c58c647c37/ENCFF334OIC.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF285OLV bam bam unfiltered alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000VXH/ 1061214938 ENCODE Processing Pipeline 1799465ee58d345cd1b0efc97034573e https://www.encodeproject.org/files/ENCFF285OLV/@@download/ENCFF285OLV.bam released s3://encode-public/2020/10/27/8d639ddb-edf5-48a5-983b-fc6c6fef92a0/ENCFF285OLV.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF576PMI bam bam unfiltered alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF110MCL/, /files/ENCFF000VXG/ 689673684 ENCODE Processing Pipeline a77cbef66a7e46748ff8c12aab48fd95 https://www.encodeproject.org/files/ENCFF576PMI/@@download/ENCFF576PMI.bam released s3://encode-public/2020/10/27/48810802-b3a9-4e7f-9973-7d9657865d0b/ENCFF576PMI.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF061HHG bam bam alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF110MCL/, /files/ENCFF000VXH/ 591682640 ENCODE Processing Pipeline 8d93b24aaf70a19e41cb375a063f88a5 https://www.encodeproject.org/files/ENCFF061HHG/@@download/ENCFF061HHG.bam released s3://encode-public/2020/10/27/f8fdf6c1-9ef2-4195-9d95-02674e4e7ce1/ENCFF061HHG.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF334KCT bam bam alignments GRCh38 ENCSR000DZH Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 27 /files/ENCFF110MCL/, /files/ENCFF000VXG/ 359672135 ENCODE Processing Pipeline e6cdb84ac822e5d0051283f35c76e038 https://www.encodeproject.org/files/ENCFF334KCT/@@download/ENCFF334KCT.bam released s3://encode-public/2020/10/27/17887ffc-97e1-4975-8508-c89227c4ad47/ENCFF334KCT.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF608VFT fastq fastq reads ENCSR490CWU Control ChIP-seq /worm-donors/ENCDO730ORW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 393487025 Kevin White, UChicago f6a22ecd5650a20d6180ece056b04ef0 https://www.encodeproject.org/files/ENCFF608VFT/@@download/ENCFF608VFT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/7b6c476e-834f-41a5-8b62-0c59a80c6345/ENCFF608VFT.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF517PNG bam bam alignments ce10 ENCSR490CWU Control ChIP-seq /worm-donors/ENCDO730ORW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF608VFT/ 524071354 Kevin White, UChicago 080586b7d7ec00b8d0225854da8438c0 https://www.encodeproject.org/files/ENCFF517PNG/@@download/ENCFF517PNG.bam released s3://encode-public/2015/08/07/ff79f01b-99c4-46c2-8868-b4ed73eaad4f/ENCFF517PNG.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF845XLN bigWig bigWig signal of unique reads ce10 ENCSR490CWU Control ChIP-seq /worm-donors/ENCDO730ORW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF517PNG/ 10066136 Kevin White, UChicago 1fc8b305602a96279ca872a8120dce0e https://www.encodeproject.org/files/ENCFF845XLN/@@download/ENCFF845XLN.bigWig released s3://encode-public/2015/10/02/886b54d4-a67e-410b-ba1f-3d27afa710f0/ENCFF845XLN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF556TYF bigWig bigWig read-depth normalized signal ce10 ENCSR490CWU Control ChIP-seq /worm-donors/ENCDO730ORW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF517PNG/ 9994367 Kevin White, UChicago 3ef328b70a5fe35adbccb00d7bdcb636 https://www.encodeproject.org/files/ENCFF556TYF/@@download/ENCFF556TYF.bigWig released s3://encode-public/2015/10/02/11e2e7da-8e71-428f-b364-4994e0afb1ef/ENCFF556TYF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF604APR bam bam alignments ce11 ENCSR490CWU Control ChIP-seq /worm-donors/ENCDO730ORW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF608VFT/ 524495609 Kevin White, UChicago 111395564dab357feb9ba7a6f78383cc https://www.encodeproject.org/files/ENCFF604APR/@@download/ENCFF604APR.bam released s3://encode-public/2016/01/20/3689b37f-439d-4774-a6a6-3cf455ac044d/ENCFF604APR.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF366JUL bigWig bigWig signal of unique reads ce11 ENCSR490CWU Control ChIP-seq /worm-donors/ENCDO730ORW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF604APR/ 10069210 Kevin White, UChicago e45d6dabfcc4a33b44df96e785528d32 https://www.encodeproject.org/files/ENCFF366JUL/@@download/ENCFF366JUL.bigWig released s3://encode-public/2016/02/03/1385dff6-f348-4b80-835a-7a56ba438661/ENCFF366JUL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF293KCJ bigWig bigWig read-depth normalized signal ce11 ENCSR490CWU Control ChIP-seq /worm-donors/ENCDO730ORW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181271/'], '@type': ['Target', 'Item'], 'name': 'sma-9-celegans', 'label': 'sma-9', '@id': '/targets/sma-9-celegans/', 'title': 'sma-9 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': 'aa041f51-a328-4f7e-939e-baa9fbd21695', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF604APR/ 9991123 Kevin White, UChicago a1d95842cbf9c345acd56485e80dd25c https://www.encodeproject.org/files/ENCFF293KCJ/@@download/ENCFF293KCJ.bigWig released s3://encode-public/2016/02/03/843166bc-781d-4755-a9ab-d5521f58f8a3/ENCFF293KCJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF001GWG bam bam alignments hg19 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GWR/ 825442191 John Stamatoyannopoulos, UW 5264bc1b354c973a80cadada2ae3c111 https://www.encodeproject.org/files/ENCFF001GWG/@@download/ENCFF001GWG.bam archived s3://encode-public/2011/06/25/59806c04-9230-4418-be8c-3cee70d894bd/ENCFF001GWG.bam Lab custom hg19 archived low read depth, low read length ENCFF001GWH bigWig bigWig raw signal hg19 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001GWG/ 171405950 John Stamatoyannopoulos, UW 524c4e3fd1b04dbef1cd17b871f0b2b3 https://www.encodeproject.org/files/ENCFF001GWH/@@download/ENCFF001GWH.bigWig archived s3://encode-public/2011/06/25/11551844-bdea-4d85-aea8-ac8b9afd9990/ENCFF001GWH.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001GWR fastq fastq reads ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 871880221 John Stamatoyannopoulos, UW 3c8834a40f064233bba120ded7cecfc0 https://www.encodeproject.org/files/ENCFF001GWR/@@download/ENCFF001GWR.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/2ced935b-85ea-4421-b7cc-90f766a95261/ENCFF001GWR.fastq.gz low read depth, low read length ENCFF430CVT bam bam unfiltered alignments GRCh38 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GWR/ 1039013860 ENCODE Processing Pipeline ad125a8256ecb76eed90915c18a7316d https://www.encodeproject.org/files/ENCFF430CVT/@@download/ENCFF430CVT.bam released s3://encode-public/2016/08/09/e2ec5ed3-db72-461e-af9c-f2edeeeefd24/ENCFF430CVT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF353NNK bam bam alignments GRCh38 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001GWR/ 738061133 ENCODE Processing Pipeline e1aeef3f5d29d2fd6925bc0dcf885dba https://www.encodeproject.org/files/ENCFF353NNK/@@download/ENCFF353NNK.bam released s3://encode-public/2016/08/09/e3b067e2-fae4-4ea4-8735-90b017dbcd44/ENCFF353NNK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF083JSC bam bam alignments hg19 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GWR/ 738273616 ENCODE Processing Pipeline 7c94c3f788c1e8d4b26eb457d903c2bf https://www.encodeproject.org/files/ENCFF083JSC/@@download/ENCFF083JSC.bam released s3://encode-public/2016/11/13/d7724605-8480-47e6-92cf-514a6a5e0027/ENCFF083JSC.bam ENCODE3 hg19 archived low read depth, low read length ENCFF509FDD bam bam unfiltered alignments hg19 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001GWR/ 1032979111 ENCODE Processing Pipeline d823bed9121ac917410f9766bc9e65b4 https://www.encodeproject.org/files/ENCFF509FDD/@@download/ENCFF509FDD.bam released s3://encode-public/2016/11/13/588f7fd7-2c75-43ac-bec8-2618e3c67d78/ENCFF509FDD.bam ENCODE3 hg19 archived low read depth, low read length ENCFF637XKK bam bam unfiltered alignments GRCh38 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GWR/ 1034173722 ENCODE Processing Pipeline e48f906280abba8360c4751668aaae24 https://www.encodeproject.org/files/ENCFF637XKK/@@download/ENCFF637XKK.bam released s3://encode-public/2020/09/03/0dc9f3ed-d181-444d-8261-3a5b840e94ea/ENCFF637XKK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF131IZM bam bam alignments GRCh38 ENCSR000DPH Control ChIP-seq /human-donors/ENCDO001AAA/ CLO:0034837 AG04449 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GWR/ 790769106 ENCODE Processing Pipeline 7e24aeae4b6471cb2cbda0e5a724c912 https://www.encodeproject.org/files/ENCFF131IZM/@@download/ENCFF131IZM.bam released s3://encode-public/2020/09/03/661d65fa-3e13-47dd-b01b-5967eec8b47f/ENCFF131IZM.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001KUD bam bam alignments mm9 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KUJ/ 867653503 Bing Ren, UCSD 0e776a0adb237c015cf638eaa5c80e44 https://www.encodeproject.org/files/ENCFF001KUD/@@download/ENCFF001KUD.bam archived s3://encode-public/2011/12/23/034302e1-1add-496e-8358-6f8265c9c8eb/ENCFF001KUD.bam Lab custom mm9 archived low read depth, low read length, inconsistent platforms ENCFF001KUE bam bam alignments mm9 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KUK/ 775997632 Bing Ren, UCSD 4209e26f93c45892a4d615a1e9d4167a https://www.encodeproject.org/files/ENCFF001KUE/@@download/ENCFF001KUE.bam archived s3://encode-public/2011/12/23/0d04293c-437f-4dc9-9096-66c085c6b048/ENCFF001KUE.bam Lab custom mm9 archived low read depth, low read length, inconsistent platforms ENCFF001KUH bigWig bigWig signal mm9 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KUD/, /files/ENCFF001KUE/ 84592890 Bing Ren, UCSD 982b600e40e1be5be2cd037b06052dc1 https://www.encodeproject.org/files/ENCFF001KUH/@@download/ENCFF001KUH.bigWig archived s3://encode-public/2011/12/23/26e077f6-a3f4-45ec-a996-f3c22d606853/ENCFF001KUH.bigWig Lab custom mm9 archived low read depth, low read length, inconsistent platforms ENCFF001KUJ fastq fastq reads ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 single-ended 776973938 Bing Ren, UCSD ad1f982aa0c1998f4ed64975d14d9914 https://www.encodeproject.org/files/ENCFF001KUJ/@@download/ENCFF001KUJ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/73c2b13a-bf25-41bb-b65a-ea07621bb6c6/ENCFF001KUJ.fastq.gz low read depth, low read length, inconsistent platforms ENCFF001KUK fastq fastq reads ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 single-ended 1023137427 Bing Ren, UCSD 85ad5289c137e27879044dd38bb7f8b3 https://www.encodeproject.org/files/ENCFF001KUK/@@download/ENCFF001KUK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/12/23/801e9c50-50d6-4abe-9c81-b2f1795d957b/ENCFF001KUK.fastq.gz low read depth, low read length, inconsistent platforms ENCFF666BUY bam bam unfiltered alignments mm10-minimal ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KUJ/, /files/ENCFF806TVZ/ 943746055 J. Michael Cherry, Stanford 88a1545656d376f2f880ef4b1faf46fc https://www.encodeproject.org/files/ENCFF666BUY/@@download/ENCFF666BUY.bam archived s3://encode-public/2015/02/04/ff1aec42-a23b-42f8-ae0f-cdf31ed7f91e/ENCFF666BUY.bam ENCODE3 mm10-minimal archived low read depth, low read length, inconsistent platforms ENCFF352EJS bam bam unfiltered alignments mm10-minimal ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001KUK/ 1189574121 J. Michael Cherry, Stanford 0c0d780a0fa0edec25a68dcba0fe9623 https://www.encodeproject.org/files/ENCFF352EJS/@@download/ENCFF352EJS.bam archived s3://encode-public/2015/02/04/84c9e6ee-87d0-4689-9b12-3cfaf05c941e/ENCFF352EJS.bam ENCODE3 mm10-minimal archived low read depth, low read length, inconsistent platforms ENCFF769FTV bam bam alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KUJ/ 604840685 ENCODE Processing Pipeline 6c108306156cb1bb78d4de6fbce385f5 https://www.encodeproject.org/files/ENCFF769FTV/@@download/ENCFF769FTV.bam released s3://encode-public/2016/04/28/dcd965b4-c974-46f1-b552-e22bd59fa932/ENCFF769FTV.bam ENCODE3 mm10 archived low read depth, low read length, inconsistent platforms ENCFF242QZL bam bam alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KUK/ 796889804 ENCODE Processing Pipeline fca8527fac661682522c9c11f2dfe731 https://www.encodeproject.org/files/ENCFF242QZL/@@download/ENCFF242QZL.bam released s3://encode-public/2016/04/28/b302d0d0-8ea2-495a-a912-91b63e293d6d/ENCFF242QZL.bam ENCODE3 mm10 archived low read depth, low read length, inconsistent platforms ENCFF658BPB bam bam unfiltered alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KUJ/ 945215463 ENCODE Processing Pipeline efee8655454a9c834298108ed9199a01 https://www.encodeproject.org/files/ENCFF658BPB/@@download/ENCFF658BPB.bam released s3://encode-public/2016/07/06/62746981-1176-45fa-9655-226fb7a1b6d7/ENCFF658BPB.bam ENCODE3 mm10 archived low read depth, low read length, inconsistent platforms ENCFF652FZI bam bam unfiltered alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KUK/ 1191014916 ENCODE Processing Pipeline 04e5a9cf9dbb3ea2fa1012e84280b4ee https://www.encodeproject.org/files/ENCFF652FZI/@@download/ENCFF652FZI.bam released s3://encode-public/2016/07/06/1caee16e-983c-44a5-bf6e-79dbb41e4aad/ENCFF652FZI.bam ENCODE3 mm10 archived low read depth, low read length, inconsistent platforms ENCFF905OLF bam bam alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF309GLL/, /files/ENCFF001KUK/ 741387406 ENCODE Processing Pipeline 83ac398d34276564d2173b58c7e083fa https://www.encodeproject.org/files/ENCFF905OLF/@@download/ENCFF905OLF.bam released s3://encode-public/2020/10/12/c8bcc348-f8dc-4a44-892d-6ff32b22cb72/ENCFF905OLF.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF134BGH bam bam unfiltered alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KUJ/ 925366031 ENCODE Processing Pipeline 89a664e3783730c9efa1519c031df029 https://www.encodeproject.org/files/ENCFF134BGH/@@download/ENCFF134BGH.bam released s3://encode-public/2020/10/12/e1c9c7a3-15b2-4cce-a547-6a8268d562a8/ENCFF134BGH.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF339ZMZ bam bam alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KUJ/ 653358819 ENCODE Processing Pipeline adb8096a1c1e3dc9b083c1172269f407 https://www.encodeproject.org/files/ENCFF339ZMZ/@@download/ENCFF339ZMZ.bam released s3://encode-public/2020/10/12/9215c562-391e-4000-afdb-895c1d1a8a98/ENCFF339ZMZ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF835ABN bam bam unfiltered alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF001KUJ/, /files/ENCFF309GLL/ 847282509 ENCODE Processing Pipeline d641c496d5e0c32f2e50cec6e035aa58 https://www.encodeproject.org/files/ENCFF835ABN/@@download/ENCFF835ABN.bam released s3://encode-public/2020/10/12/07d3e2c7-a191-40f6-9c16-f745cb5c8343/ENCFF835ABN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF456IJL bam bam unfiltered alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF309GLL/, /files/ENCFF001KUK/ 1052433578 ENCODE Processing Pipeline d7561c74fc35e9eb823f88034c9ef043 https://www.encodeproject.org/files/ENCFF456IJL/@@download/ENCFF456IJL.bam released s3://encode-public/2020/10/12/ab0a4809-fc18-4107-a6c7-7a06b4f85593/ENCFF456IJL.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF313DQV bam bam alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF001KUJ/, /files/ENCFF309GLL/ 581421111 ENCODE Processing Pipeline 1f99b97d70a6a34ddfbf73fc005c0c8a https://www.encodeproject.org/files/ENCFF313DQV/@@download/ENCFF313DQV.bam released s3://encode-public/2020/10/12/1740cfad-9e99-4449-b0dd-ff8b184353b1/ENCFF313DQV.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF184EYK bam bam unfiltered alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KUK/ 1164656711 ENCODE Processing Pipeline 45952943e50c5b46af2d96f4d0c277fd https://www.encodeproject.org/files/ENCFF184EYK/@@download/ENCFF184EYK.bam released s3://encode-public/2020/10/12/ae4d5523-fc4d-4130-9fbc-b500e99ebed7/ENCFF184EYK.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF314ZSE bam bam alignments mm10 ENCSR000CCT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002108 small intestine tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KUK/ 854186965 ENCODE Processing Pipeline 71d93c1f640b7a7620337d90514887ea https://www.encodeproject.org/files/ENCFF314ZSE/@@download/ENCFF314ZSE.bam released s3://encode-public/2020/10/12/b345f2be-c4e5-4bc4-a993-5814f5e4dc01/ENCFF314ZSE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, inconsistent platforms ENCFF000OLG bam bam alignments hg19 ENCSR000BIG Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 1662260307 Richard Myers, HAIB 6e2ee8378f13959469df908184f1d83a https://www.encodeproject.org/files/ENCFF000OLG/@@download/ENCFF000OLG.bam archived s3://encode-public/2012/01/23/4b936197-37d2-48e2-b7a9-e4ce2a6891b4/ENCFF000OLG.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF000OLI bigWig bigWig raw signal hg19 ENCSR000BIG Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 15732803 Richard Myers, HAIB 86f20a23e4aa7bcc7cd6a369e816ed59 https://www.encodeproject.org/files/ENCFF000OLI/@@download/ENCFF000OLI.bigWig archived 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/files/ENCFF000OLS/ 1960710696 ENCODE Processing Pipeline 95312a3599cd74138baebbf1306abc66 https://www.encodeproject.org/files/ENCFF210PHG/@@download/ENCFF210PHG.bam released s3://encode-public/2016/11/13/1ebf36bd-89a4-41ff-bb7d-a3f9543a8f71/ENCFF210PHG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF134LQW bam bam alignments hg19 ENCSR000BIG Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OLS/ 1159046241 ENCODE Processing Pipeline c3b8771ac418b80c80e43cd3efe262ed https://www.encodeproject.org/files/ENCFF134LQW/@@download/ENCFF134LQW.bam released s3://encode-public/2016/11/13/8fdda6a1-ef14-48c1-be6f-07bd841ee526/ENCFF134LQW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF544PDI bam bam unfiltered alignments GRCh38 ENCSR000BIG Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OLS/, /files/ENCFF110MCL/ 1910882421 ENCODE Processing Pipeline 97303cadef4524c67327b9454c2896bd https://www.encodeproject.org/files/ENCFF544PDI/@@download/ENCFF544PDI.bam released s3://encode-public/2020/10/28/ea24058c-38f7-457e-beb1-2971e370f3db/ENCFF544PDI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF170KFP bam bam alignments GRCh38 ENCSR000BIG Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000OLS/, /files/ENCFF110MCL/ 1276044732 ENCODE Processing Pipeline 15a2748a75d5f8eb12cd0b3e9ae192e9 https://www.encodeproject.org/files/ENCFF170KFP/@@download/ENCFF170KFP.bam released s3://encode-public/2020/10/28/43d63032-40a7-4061-be57-e0b91d04ad8c/ENCFF170KFP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF000ZHX bigWig bigWig signal hg19 ENCSR000DOW Control ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 172348103 Kevin Struhl, HMS 65fe1c29f13f646ec0b3c494212ee309 https://www.encodeproject.org/files/ENCFF000ZHX/@@download/ENCFF000ZHX.bigWig archived s3://encode-public/2010/10/20/0a625b3a-01bd-428e-9329-bcd93abecc5b/ENCFF000ZHX.bigWig Lab custom hg19 archived missing genetic modification characterization, low read length, missing biosample characterization ENCFF000ZHY bam bam alignments hg19 ENCSR000DOW Control ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 34 540631578 Kevin Struhl, HMS 1d448a7e5654fb85e953863e5ddc6855 https://www.encodeproject.org/files/ENCFF000ZHY/@@download/ENCFF000ZHY.bam archived s3://encode-public/2010/10/20/21eb4aa3-2d93-4427-ada4-54f055cc9249/ENCFF000ZHY.bam Lab custom hg19 archived missing genetic modification characterization, low read length, missing biosample characterization ENCFF000ZIS fastq fastq reads ENCSR000DOW Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 862280304 Kevin Struhl, HMS d9862d49e897b4c392834e750aacc3e8 https://www.encodeproject.org/files/ENCFF000ZIS/@@download/ENCFF000ZIS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/10/20/86955843-5816-4d1f-86fc-941361153d7e/ENCFF000ZIS.fastq.gz missing genetic modification characterization, low read length, missing biosample characterization ENCFF497USM bam bam unfiltered alignments GRCh38 ENCSR000DOW Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIS/, /files/ENCFF643CGH/ 1063300597 ENCODE Processing Pipeline 7c2688ed5bbe66b1708fd160afc54002 https://www.encodeproject.org/files/ENCFF497USM/@@download/ENCFF497USM.bam released s3://encode-public/2016/10/26/d3a10a1e-df83-4818-be97-edf4dc8e3f14/ENCFF497USM.bam ENCODE3 GRCh38 archived missing genetic modification characterization, low read length, missing biosample characterization ENCFF018JOG bam bam alignments GRCh38 ENCSR000DOW Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIS/, /files/ENCFF643CGH/ 756780470 ENCODE Processing Pipeline 90020ed696e00a731dd2541e4a826002 https://www.encodeproject.org/files/ENCFF018JOG/@@download/ENCFF018JOG.bam released s3://encode-public/2016/10/26/de15c728-429a-48f2-a332-8a03232bb3e7/ENCFF018JOG.bam ENCODE3 GRCh38 archived missing genetic modification characterization, low read length, missing biosample characterization ENCFF124VJU bam bam unfiltered alignments hg19 ENCSR000DOW Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIS/, /files/ENCFF807MUK/ 1058309389 ENCODE Processing Pipeline 06c6882083dbb7482f7004e97fbaeeee https://www.encodeproject.org/files/ENCFF124VJU/@@download/ENCFF124VJU.bam released s3://encode-public/2017/07/03/39ef51fe-1224-4caf-8fa4-57e0ce3517c9/ENCFF124VJU.bam ENCODE3 hg19 archived missing genetic modification characterization, low read length, missing biosample characterization ENCFF868NVF bam bam alignments hg19 ENCSR000DOW Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000ZIS/, /files/ENCFF807MUK/ 757068801 ENCODE Processing Pipeline 62d0b36893f34718c3cec52dbb2acd22 https://www.encodeproject.org/files/ENCFF868NVF/@@download/ENCFF868NVF.bam released s3://encode-public/2017/07/03/f46af491-376b-4216-aed2-c92ee255491b/ENCFF868NVF.bam ENCODE3 hg19 archived missing genetic modification characterization, low read length, missing biosample characterization ENCFF458DKI bam bam unfiltered alignments GRCh38 ENCSR000DOW Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZIS/ 1045341154 ENCODE Processing Pipeline 896c0321b26eaa9d8470b02635214cd6 https://www.encodeproject.org/files/ENCFF458DKI/@@download/ENCFF458DKI.bam released s3://encode-public/2020/10/27/da412956-bf05-4ac4-b88a-8991b8c3890b/ENCFF458DKI.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, missing biosample characterization ENCFF161WFP bam bam alignments GRCh38 ENCSR000DOW Control ChIP-seq /human-donors/ENCDO000AAP/ EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 12.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6714/'], '@type': ['Target', 'Item'], 'name': 'SRC-human', 'label': 'SRC', '@id': '/targets/SRC-human/', 'title': 'SRC (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '8a4fb22e-1bea-11e3-bbe8-14109fe2b29d', 'status': 'released'} DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ZIS/ 822139935 ENCODE Processing Pipeline f240609bea356fbed061dc6abf247ae7 https://www.encodeproject.org/files/ENCFF161WFP/@@download/ENCFF161WFP.bam released s3://encode-public/2020/10/27/5b136bc4-c86f-4c92-b5e5-de150bac6748/ENCFF161WFP.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, missing biosample characterization ENCFF001KCQ bam bam alignments mm9 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KCX/ 270521236 Bing Ren, UCSD 34d934581dc012c284b340c561bd96e6 https://www.encodeproject.org/files/ENCFF001KCQ/@@download/ENCFF001KCQ.bam archived s3://encode-public/2011/12/23/9a4cb86f-b3a3-48ff-8e74-df4bda51fcd8/ENCFF001KCQ.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KCR bam bam alignments mm9 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KDF/ 758598385 Bing Ren, UCSD 7fd26565f46ab4e20a4fb65bacf1bf61 https://www.encodeproject.org/files/ENCFF001KCR/@@download/ENCFF001KCR.bam archived s3://encode-public/2011/12/23/3ba5f733-6f17-4ba2-be09-f385c7136b06/ENCFF001KCR.bam Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KCW bigWig bigWig signal mm9 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1, 2 1_1, 2_1 /files/ENCFF001KCQ/, /files/ENCFF001KCR/ 70864819 Bing Ren, UCSD 7d8d27767269bf9744504513bc0a572b https://www.encodeproject.org/files/ENCFF001KCW/@@download/ENCFF001KCW.bigWig archived s3://encode-public/2011/12/23/6f172459-c66f-4125-9594-0d78d5342f53/ENCFF001KCW.bigWig Lab custom mm9 archived low read depth, low read length insufficient read depth ENCFF001KCX fastq fastq reads ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 single-ended 834323399 Bing Ren, UCSD dc8f7e82ceacdbf155aa648e65c9c6c0 https://www.encodeproject.org/files/ENCFF001KCX/@@download/ENCFF001KCX.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/a378c773-a42f-4135-b1d4-f39be0e0fcce/ENCFF001KCX.fastq.gz low read depth, low read length insufficient read depth ENCFF001KDF fastq fastq reads ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 single-ended 869149643 Bing Ren, UCSD 6b9ce8a4d6c12977a3d8c3fb87a2360c https://www.encodeproject.org/files/ENCFF001KDF/@@download/ENCFF001KDF.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/12/23/e1151d3c-86b9-4173-97b0-df4f0a2fe334/ENCFF001KDF.fastq.gz low read depth, low read length insufficient read depth ENCFF141TNM bam bam unfiltered alignments mm10-minimal ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF001KCX/, /files/ENCFF806TVZ/ 878358169 J. Michael Cherry, Stanford 8cd0832283826915dd0270d86c1d7b4c https://www.encodeproject.org/files/ENCFF141TNM/@@download/ENCFF141TNM.bam archived s3://encode-public/2015/02/04/0e48a30f-00d2-4a3d-b12b-66296d26ff31/ENCFF141TNM.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF480RTU bam bam unfiltered alignments mm10-minimal ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KDF/, /files/ENCFF806TVZ/ 988271503 J. Michael Cherry, Stanford 3862b4e5c0465dd49d950367e1294644 https://www.encodeproject.org/files/ENCFF480RTU/@@download/ENCFF480RTU.bam archived s3://encode-public/2015/02/04/45fa448a-a8d1-4859-b529-9f0d1d99068a/ENCFF480RTU.bam ENCODE3 mm10-minimal archived low read depth, low read length insufficient read depth ENCFF745XER bam bam alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KCX/ 297932786 ENCODE Processing Pipeline 7f08d88a2b17bd40f56cd64093022d1b https://www.encodeproject.org/files/ENCFF745XER/@@download/ENCFF745XER.bam released s3://encode-public/2016/04/28/c96ff67b-cde6-4264-aa6a-6f4e2b6d91ed/ENCFF745XER.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF555HBY bam bam alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KDF/ 657336959 ENCODE Processing Pipeline e560859f5a04f2d4e4d12cb910e39cb3 https://www.encodeproject.org/files/ENCFF555HBY/@@download/ENCFF555HBY.bam released s3://encode-public/2016/04/28/2a148286-689b-4dfa-b32d-b2464e3fdafd/ENCFF555HBY.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF722HYJ bam bam unfiltered alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001KDF/ 988412917 ENCODE Processing Pipeline 10861a5040ef3f9bbd1bbc5f3b40a5b1 https://www.encodeproject.org/files/ENCFF722HYJ/@@download/ENCFF722HYJ.bam released s3://encode-public/2016/07/06/dd736269-2c4a-452f-b598-92c4fe9f0703/ENCFF722HYJ.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF832XHQ bam bam unfiltered alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001KCX/ 878728642 ENCODE Processing Pipeline d3797cfe6d04bcab1f652ab2891fa144 https://www.encodeproject.org/files/ENCFF832XHQ/@@download/ENCFF832XHQ.bam released s3://encode-public/2016/07/06/0b05dd19-deb1-475d-b204-6b1749dad227/ENCFF832XHQ.bam ENCODE3 mm10 archived low read depth, low read length insufficient read depth ENCFF398CKS bam bam alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KCX/ 312620587 ENCODE Processing Pipeline 1920bf3e5a5b22898e12dd963bb08a06 https://www.encodeproject.org/files/ENCFF398CKS/@@download/ENCFF398CKS.bam released s3://encode-public/2020/10/12/2ed25193-0408-47e8-8fef-67a359e1a78e/ENCFF398CKS.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF590BIW bam bam unfiltered alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KDF/ 982783961 ENCODE Processing Pipeline 4746817b7d3e6f4992313ea215c62bfb https://www.encodeproject.org/files/ENCFF590BIW/@@download/ENCFF590BIW.bam released s3://encode-public/2020/10/12/61016d37-2fac-46b0-8fa4-d6151269e90c/ENCFF590BIW.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF161JIA bam bam alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001KDF/ 692583725 ENCODE Processing Pipeline 65b625f63c8f82851ee6046ee97574b1 https://www.encodeproject.org/files/ENCFF161JIA/@@download/ENCFF161JIA.bam released s3://encode-public/2020/10/12/4571fad3-8fe6-4fb6-bb1c-4471467e2636/ENCFF161JIA.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF331UBI bam bam unfiltered alignments mm10 ENCSR000CAU Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0005343 cortical plate tissue Mus musculus DNA 2011-06-24 ENCODE see document 200-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001KCX/ 873683237 ENCODE Processing Pipeline e8ce5b8f37625a4fafb56fd3e58dd507 https://www.encodeproject.org/files/ENCFF331UBI/@@download/ENCFF331UBI.bam released s3://encode-public/2020/10/12/30edbe01-8c0c-4b94-800b-3e848d28611b/ENCFF331UBI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length insufficient read depth ENCFF264SXW bam bam unfiltered alignments hg19 ENCSR945JOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 7 7_1 50 /files/ENCFF807MUK/, /files/ENCFF074CLV/ 2875126143 ENCODE Processing Pipeline d181a44e9dad7f462e4597b1d734ac45 https://www.encodeproject.org/files/ENCFF264SXW/@@download/ENCFF264SXW.bam released s3://encode-public/2018/02/22/2e6d6586-5477-4710-89b5-2f992cabe762/ENCFF264SXW.bam ENCODE3 hg19 archived ENCFF074CLV fastq fastq reads ENCSR945JOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 7 7_1 50 single-ended 2789412528 Richard Myers, HAIB f83aa21668bd919a834c3f90f5664c42 SRA:SRR5339607 https://www.encodeproject.org/files/ENCFF074CLV/@@download/ENCFF074CLV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/04/06/ff4af023-1f6d-41d8-ab4d-060179f64c16/ENCFF074CLV.fastq.gz ENCFF449ZKA bam bam alignments hg19 ENCSR945JOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 7 7_1 50 /files/ENCFF807MUK/, /files/ENCFF074CLV/ 2018176464 ENCODE Processing Pipeline 05e0ef25afa6b4753af7db3d080bced4 https://www.encodeproject.org/files/ENCFF449ZKA/@@download/ENCFF449ZKA.bam released s3://encode-public/2015/11/17/557fca03-adbc-45b5-99bd-25a4b366fc10/ENCFF449ZKA.bam ENCODE3 hg19 archived ENCFF870ZUQ bam bam unfiltered alignments GRCh38 ENCSR945JOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 7 7_1 50 /files/ENCFF643CGH/, /files/ENCFF074CLV/ 2881612942 ENCODE Processing Pipeline a8b68aa151b8864dcda809c6ecb665d8 https://www.encodeproject.org/files/ENCFF870ZUQ/@@download/ENCFF870ZUQ.bam released s3://encode-public/2016/05/06/b85bffbb-6e99-4630-81f7-671b32bc7d92/ENCFF870ZUQ.bam ENCODE3 GRCh38 archived ENCFF749JIA bam bam alignments GRCh38 ENCSR945JOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 7 7_1 50 /files/ENCFF643CGH/, /files/ENCFF074CLV/ 2018593914 ENCODE Processing Pipeline d0ca534e05cb5973b3b37a592200e370 https://www.encodeproject.org/files/ENCFF749JIA/@@download/ENCFF749JIA.bam released s3://encode-public/2016/05/06/24e44952-d35c-4341-8ea1-bcc8485313ed/ENCFF749JIA.bam ENCODE3 GRCh38 archived ENCFF514LHF bam bam unfiltered alignments GRCh38 ENCSR945JOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 7 7_1 50 /files/ENCFF110MCL/, /files/ENCFF074CLV/ 2901683715 ENCODE Processing Pipeline 1492986c590f77098742b2e00efe2da1 https://www.encodeproject.org/files/ENCFF514LHF/@@download/ENCFF514LHF.bam released s3://encode-public/2020/06/06/bb353cf5-9ddf-4e31-9b63-5d9f312a712b/ENCFF514LHF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF288DKX bam bam alignments GRCh38 ENCSR945JOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 7 7_1 50 /files/ENCFF110MCL/, /files/ENCFF074CLV/ 2071150434 ENCODE Processing Pipeline b43f4cf080f4088c5cfcce46a3ea4097 https://www.encodeproject.org/files/ENCFF288DKX/@@download/ENCFF288DKX.bam released s3://encode-public/2020/06/06/44bfcce9-9d1a-408e-8761-13dba62754ca/ENCFF288DKX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF341HAI fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 616232609 Bradley Bernstein, Broad 6c41612fd28204e29981dfee3bf2f41e SRA:SRR16808702 https://www.encodeproject.org/files/ENCFF341HAI/@@download/ENCFF341HAI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/69f1e204-9904-44d4-9ad8-31fbac0c1ef1/ENCFF341HAI.fastq.gz ENCFF577XKF fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 516592545 Bradley Bernstein, Broad 6ce4ddce97d775b27babf1c5c5c476a5 SRA:SRR16808706 https://www.encodeproject.org/files/ENCFF577XKF/@@download/ENCFF577XKF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/12e315ef-1257-48ca-949f-63e645638692/ENCFF577XKF.fastq.gz ENCFF088FTE fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 503624252 Bradley Bernstein, Broad 3fef951548c3231ac1c16d9003c6bd35 SRA:SRR16808707 https://www.encodeproject.org/files/ENCFF088FTE/@@download/ENCFF088FTE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/85e849d3-adb5-4684-8cad-216a8df8de41/ENCFF088FTE.fastq.gz ENCFF841XQR fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 509624685 Bradley Bernstein, Broad 0fc8990dddce84a3e9e666bc57c5ad8f SRA:SRR16808708 https://www.encodeproject.org/files/ENCFF841XQR/@@download/ENCFF841XQR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/c7bab295-553f-4c44-9e9b-0437707f2367/ENCFF841XQR.fastq.gz ENCFF197JQK fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 615181662 Bradley Bernstein, Broad 19565ca5dd1e2407708e648eebf467c9 SRA:SRR16808703 https://www.encodeproject.org/files/ENCFF197JQK/@@download/ENCFF197JQK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/eb5f4a1a-d07f-44b2-ac87-df06aa1aa8ad/ENCFF197JQK.fastq.gz ENCFF137AUQ fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 510155863 Bradley Bernstein, Broad d4763c9a450c8b1e71e1fa2c2662388a SRA:SRR16808709 https://www.encodeproject.org/files/ENCFF137AUQ/@@download/ENCFF137AUQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f7ad40fc-8f2d-4b87-bc2a-f8cbce29019c/ENCFF137AUQ.fastq.gz ENCFF821NPI fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 622851812 Bradley Bernstein, Broad 987d7d6505364f2902dc64ab3081c6c1 SRA:SRR16808704 https://www.encodeproject.org/files/ENCFF821NPI/@@download/ENCFF821NPI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/52c6ac53-2f0d-4028-a62b-d0e325dd146c/ENCFF821NPI.fastq.gz ENCFF975XIG fastq fastq reads ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 624996303 Bradley Bernstein, Broad 3e3d66c69337dceb74d8012e1f1f4061 SRA:SRR16808705 https://www.encodeproject.org/files/ENCFF975XIG/@@download/ENCFF975XIG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/b5e7f7a8-6433-4efa-8d1b-d0ab5303b1d9/ENCFF975XIG.fastq.gz ENCFF177BCE bam bam alignments GRCh38 ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF088FTE/, /files/ENCFF197JQK/, /files/ENCFF841XQR/, /files/ENCFF975XIG/, /files/ENCFF821NPI/, /files/ENCFF137AUQ/, /files/ENCFF341HAI/, /files/ENCFF110MCL/, /files/ENCFF577XKF/ 3505994777 ENCODE Processing Pipeline d4cc804ffc10803a92c30bf4fc60e8ca https://www.encodeproject.org/files/ENCFF177BCE/@@download/ENCFF177BCE.bam released s3://encode-public/2021/09/15/2c2bb5a3-6332-438f-bcca-6df2778818b1/ENCFF177BCE.bam ENCODE4 v1.8.0 GRCh38 released ENCFF382AZM bam bam unfiltered alignments GRCh38 ENCSR170MJE Control ChIP-seq /human-donors/ENCDO804CLC/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF088FTE/, /files/ENCFF197JQK/, /files/ENCFF841XQR/, /files/ENCFF975XIG/, /files/ENCFF821NPI/, /files/ENCFF137AUQ/, /files/ENCFF341HAI/, /files/ENCFF110MCL/, /files/ENCFF577XKF/ 4281442452 ENCODE Processing Pipeline 497d1e91b42d8706200ea1b1d125e119 https://www.encodeproject.org/files/ENCFF382AZM/@@download/ENCFF382AZM.bam released s3://encode-public/2021/09/15/34479eb9-5792-4e23-b9fc-7cdd19a8411b/ENCFF382AZM.bam ENCODE4 v1.8.0 GRCh38 released ENCFF076IRY fastq fastq reads ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2798499491 Bing Ren, UCSD 80f51c73670a0b46bdec077796fd7b3f SRA:SRR3653178 https://www.encodeproject.org/files/ENCFF076IRY/@@download/ENCFF076IRY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/47de7655-28d5-4104-a969-09aaa65b8410/ENCFF076IRY.fastq.gz inconsistent platforms ENCFF879XFV fastq fastq reads ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 3227336531 Bing Ren, UCSD 864bd5cdf4f4f2d9133fc0eb07b1ec3a SRA:SRR3653181 https://www.encodeproject.org/files/ENCFF879XFV/@@download/ENCFF879XFV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/7d9c7001-ee07-486e-bc16-5e98da51e1e3/ENCFF879XFV.fastq.gz inconsistent platforms ENCFF582LOU bam bam alignments mm10-minimal ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF879XFV/ 2622596253 ENCODE Processing Pipeline 06839582766a527c808a68214b04633d https://www.encodeproject.org/files/ENCFF582LOU/@@download/ENCFF582LOU.bam archived s3://encode-public/2015/10/31/c4c755a6-aa88-4118-ba47-3c5cc1d2fb59/ENCFF582LOU.bam inconsistent platforms ENCFF245YVK bam bam alignments mm10-minimal ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF076IRY/, /files/ENCFF806TVZ/ 2312359748 ENCODE Processing Pipeline 8eee11926d727272e1df34e3bcea1932 https://www.encodeproject.org/files/ENCFF245YVK/@@download/ENCFF245YVK.bam archived s3://encode-public/2015/10/31/3996ae0f-0366-4458-9212-17fdfd0978f4/ENCFF245YVK.bam inconsistent platforms ENCFF155LYM fastq fastq reads ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 239802972 Bing Ren, UCSD f2ec8341e1069f04d53b948b65dd7272 SRA:SRR3653179 https://www.encodeproject.org/files/ENCFF155LYM/@@download/ENCFF155LYM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/4b5efd17-88c4-4e5a-ab2a-f63f9abe5b3e/ENCFF155LYM.fastq.gz inconsistent platforms ENCFF947EDP fastq fastq reads ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 118802732 Bing Ren, UCSD 19c12cd00859f0ec1c31aaa969b1fab2 SRA:SRR3653182 https://www.encodeproject.org/files/ENCFF947EDP/@@download/ENCFF947EDP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/6ef56534-4afe-4844-9c56-fae9d28f4af0/ENCFF947EDP.fastq.gz inconsistent platforms ENCFF856YXG fastq fastq reads ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 270931576 Bing Ren, UCSD d74188141dbb333e08f8d7290afc1a43 SRA:SRR3653180 https://www.encodeproject.org/files/ENCFF856YXG/@@download/ENCFF856YXG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/aeccacec-a3e6-4bbc-ad5b-17f30c286b6a/ENCFF856YXG.fastq.gz inconsistent platforms ENCFF245OIS bam bam alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF947EDP/, /files/ENCFF018NEO/, /files/ENCFF879XFV/ 2758313492 ENCODE Processing Pipeline bb8c3a3d5387152824e941f06ddbb9e9 https://www.encodeproject.org/files/ENCFF245OIS/@@download/ENCFF245OIS.bam released s3://encode-public/2016/07/18/586f067e-c67b-4166-9268-b241f8166a3c/ENCFF245OIS.bam ENCODE3 mm10 archived inconsistent platforms ENCFF911TKL bam bam unfiltered alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF947EDP/, /files/ENCFF018NEO/, /files/ENCFF879XFV/ 4110558510 ENCODE Processing Pipeline f4a50071a777b25e96a851952282abe2 https://www.encodeproject.org/files/ENCFF911TKL/@@download/ENCFF911TKL.bam released s3://encode-public/2016/07/18/e1bd2158-5102-4edf-8dae-3991b73890da/ENCFF911TKL.bam ENCODE3 mm10 archived inconsistent platforms ENCFF389YBT bam bam alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF076IRY/, /files/ENCFF018NEO/, /files/ENCFF856YXG/, /files/ENCFF155LYM/ 2852644827 ENCODE Processing Pipeline b733474cd6416cb373be17b7ac168fa2 https://www.encodeproject.org/files/ENCFF389YBT/@@download/ENCFF389YBT.bam released s3://encode-public/2016/07/18/e979aa73-cc3e-4382-8491-b671c5cad55d/ENCFF389YBT.bam ENCODE3 mm10 archived inconsistent platforms ENCFF514ZTX bam bam unfiltered alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF076IRY/, /files/ENCFF018NEO/, /files/ENCFF856YXG/, /files/ENCFF155LYM/ 4187977939 ENCODE Processing Pipeline 8ac66300e5878e3bedf264844c6fcff5 https://www.encodeproject.org/files/ENCFF514ZTX/@@download/ENCFF514ZTX.bam released s3://encode-public/2016/07/18/e9a880ec-899c-4170-b48f-326cfb4b9287/ENCFF514ZTX.bam ENCODE3 mm10 archived inconsistent platforms ENCFF897EIZ bam bam unfiltered alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF879XFV/, /files/ENCFF309GLL/, /files/ENCFF947EDP/ 4033061375 ENCODE Processing Pipeline 9ef4a4479a5bb96632e29ae26cbe4553 https://www.encodeproject.org/files/ENCFF897EIZ/@@download/ENCFF897EIZ.bam released s3://encode-public/2020/10/07/65689836-6895-45a7-8b1e-904daa092eb4/ENCFF897EIZ.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF592ZVG bam bam unfiltered alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF155LYM/, /files/ENCFF076IRY/, /files/ENCFF856YXG/, /files/ENCFF309GLL/ 4090922937 ENCODE Processing Pipeline 98eddc4f53c383c6d9267f1806801c1a https://www.encodeproject.org/files/ENCFF592ZVG/@@download/ENCFF592ZVG.bam released s3://encode-public/2020/10/07/f9f6ccbb-87de-45e5-9ae8-8cb0ebf892b8/ENCFF592ZVG.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF025ZUF bam bam alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF879XFV/, /files/ENCFF309GLL/, /files/ENCFF947EDP/ 2851941048 ENCODE Processing Pipeline c078c3499bb76d87aa74eaeedc785e3b https://www.encodeproject.org/files/ENCFF025ZUF/@@download/ENCFF025ZUF.bam released s3://encode-public/2020/10/07/86f25000-9899-42cd-a329-49eecb746e5b/ENCFF025ZUF.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF112CLR bam bam alignments mm10 ENCSR872UEE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF155LYM/, /files/ENCFF076IRY/, /files/ENCFF856YXG/, /files/ENCFF309GLL/ 2935721642 ENCODE Processing Pipeline 00042785de62fcd730172e965d8e01c4 https://www.encodeproject.org/files/ENCFF112CLR/@@download/ENCFF112CLR.bam released s3://encode-public/2020/10/07/98a87c2d-f71d-4da6-a1f3-7bcbedba96ba/ENCFF112CLR.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF357HAN fastq fastq reads ENCSR931UUY Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 406478185 Kevin White, UChicago 39792a66c98a7f0bcaba0d1efcf8344a https://www.encodeproject.org/files/ENCFF357HAN/@@download/ENCFF357HAN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/e66c86f7-5735-41a0-bbc4-30d504222256/ENCFF357HAN.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF945XIV bam bam alignments ce10 ENCSR931UUY Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF357HAN/ 568305015 Kevin White, UChicago 9ff47a7389a002c0ded668143042ecd9 https://www.encodeproject.org/files/ENCFF945XIV/@@download/ENCFF945XIV.bam released s3://encode-public/2015/08/19/c11ab8f8-dbe2-433f-9cb8-966d714ba345/ENCFF945XIV.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF421VYJ bigWig bigWig read-depth normalized signal ce10 ENCSR931UUY Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF945XIV/ 10018286 Kevin White, UChicago 69489a039ccd11dae639ee75d4354270 https://www.encodeproject.org/files/ENCFF421VYJ/@@download/ENCFF421VYJ.bigWig released s3://encode-public/2015/10/02/61fa0567-e994-40d4-84c6-d75512fa06e4/ENCFF421VYJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF951ODT bigWig bigWig signal of unique reads ce10 ENCSR931UUY Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF945XIV/ 10029035 Kevin White, UChicago 4b4f920f290f096c33bedbaa507d9e6f https://www.encodeproject.org/files/ENCFF951ODT/@@download/ENCFF951ODT.bigWig released s3://encode-public/2015/10/02/5e10765b-1561-4321-bad4-1abaa2d448ce/ENCFF951ODT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF302MZG bam bam alignments ce11 ENCSR931UUY Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF357HAN/ 568831137 Kevin White, UChicago f657aff3cf0fe15e7341007dd0267a78 https://www.encodeproject.org/files/ENCFF302MZG/@@download/ENCFF302MZG.bam released s3://encode-public/2016/01/16/b78d22aa-602c-40be-bc6d-3a124fe035f5/ENCFF302MZG.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF505VZH bigWig bigWig signal of unique reads ce11 ENCSR931UUY Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF302MZG/ 10023763 Kevin White, UChicago f2f383a175a4ad70d40b405149962b4c https://www.encodeproject.org/files/ENCFF505VZH/@@download/ENCFF505VZH.bigWig released s3://encode-public/2016/02/03/119f2fcf-36e7-432a-9744-9aa33512b409/ENCFF505VZH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF803AMU bigWig bigWig read-depth normalized signal ce11 ENCSR931UUY Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF302MZG/ 10005343 Kevin White, UChicago 53798a6d8bcbebf6a7cf01139d602d71 https://www.encodeproject.org/files/ENCFF803AMU/@@download/ENCFF803AMU.bigWig released s3://encode-public/2016/02/03/6a6ba67e-0764-4a7f-a4b4-579a8da45e2b/ENCFF803AMU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF792NXU fastq fastq reads ENCSR530XBH Control ChIP-seq /worm-donors/ENCDO095DXY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177545/'], '@type': ['Target', 'Item'], 'name': 'C08G9.2-celegans', 'label': 'C08G9.2', '@id': '/targets/C08G9.2-celegans/', 'title': 'C08G9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '65029781-0517-42b3-a1f8-dc489d5f454e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 729637090 Kevin White, UChicago 08c848d941bb1b0908373bb25c7b28ff https://www.encodeproject.org/files/ENCFF792NXU/@@download/ENCFF792NXU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/48273beb-ca40-44b2-b04e-7214ae0f2a35/ENCFF792NXU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF720QPT bam bam alignments ce10 ENCSR530XBH Control ChIP-seq /worm-donors/ENCDO095DXY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177545/'], '@type': ['Target', 'Item'], 'name': 'C08G9.2-celegans', 'label': 'C08G9.2', '@id': '/targets/C08G9.2-celegans/', 'title': 'C08G9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '65029781-0517-42b3-a1f8-dc489d5f454e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF792NXU/ 1039861715 Kevin White, UChicago 008c77eef571c15789d9e087730db22e https://www.encodeproject.org/files/ENCFF720QPT/@@download/ENCFF720QPT.bam released s3://encode-public/2015/08/19/e24707c2-2c0d-4e3c-a6ba-8fa60173ba21/ENCFF720QPT.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF690SEO bigWig bigWig signal of unique reads ce10 ENCSR530XBH Control ChIP-seq /worm-donors/ENCDO095DXY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177545/'], '@type': ['Target', 'Item'], 'name': 'C08G9.2-celegans', 'label': 'C08G9.2', '@id': '/targets/C08G9.2-celegans/', 'title': 'C08G9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '65029781-0517-42b3-a1f8-dc489d5f454e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF720QPT/ 9993091 Kevin White, UChicago 8dcf70116a86789b3e723066b0697e8a https://www.encodeproject.org/files/ENCFF690SEO/@@download/ENCFF690SEO.bigWig released s3://encode-public/2015/10/02/e3664758-58c2-4baa-b4da-a0889bb22f45/ENCFF690SEO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF169JFL bigWig bigWig read-depth normalized signal ce10 ENCSR530XBH Control ChIP-seq /worm-donors/ENCDO095DXY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177545/'], '@type': ['Target', 'Item'], 'name': 'C08G9.2-celegans', 'label': 'C08G9.2', '@id': '/targets/C08G9.2-celegans/', 'title': 'C08G9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '65029781-0517-42b3-a1f8-dc489d5f454e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF720QPT/ 10040902 Kevin White, UChicago f48c88cfb376fac7c8b746289e836df8 https://www.encodeproject.org/files/ENCFF169JFL/@@download/ENCFF169JFL.bigWig released s3://encode-public/2015/10/02/f9bb910a-2103-4a93-bbc2-a7591d760160/ENCFF169JFL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF885HUL bam bam alignments ce11 ENCSR530XBH Control ChIP-seq /worm-donors/ENCDO095DXY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177545/'], '@type': ['Target', 'Item'], 'name': 'C08G9.2-celegans', 'label': 'C08G9.2', '@id': '/targets/C08G9.2-celegans/', 'title': 'C08G9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '65029781-0517-42b3-a1f8-dc489d5f454e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF792NXU/ 1040736783 Kevin White, UChicago f8a21a4d7494a3a71bf94367ec1f75b9 https://www.encodeproject.org/files/ENCFF885HUL/@@download/ENCFF885HUL.bam released s3://encode-public/2016/01/16/87772c0b-57f2-4d3c-b2ed-17ff87478e64/ENCFF885HUL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF506IZU bigWig bigWig signal of unique reads ce11 ENCSR530XBH Control ChIP-seq /worm-donors/ENCDO095DXY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177545/'], '@type': ['Target', 'Item'], 'name': 'C08G9.2-celegans', 'label': 'C08G9.2', '@id': '/targets/C08G9.2-celegans/', 'title': 'C08G9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '65029781-0517-42b3-a1f8-dc489d5f454e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF885HUL/ 9989090 Kevin White, UChicago 30e0dd4a9120d33fb49f1581af6cd2dc https://www.encodeproject.org/files/ENCFF506IZU/@@download/ENCFF506IZU.bigWig released s3://encode-public/2016/02/03/bd056c2d-35d2-4c5b-b27a-adefaa4ef0ce/ENCFF506IZU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF434OZS bigWig bigWig read-depth normalized signal ce11 ENCSR530XBH Control ChIP-seq /worm-donors/ENCDO095DXY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177545/'], '@type': ['Target', 'Item'], 'name': 'C08G9.2-celegans', 'label': 'C08G9.2', '@id': '/targets/C08G9.2-celegans/', 'title': 'C08G9.2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '65029781-0517-42b3-a1f8-dc489d5f454e', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF885HUL/ 10037040 Kevin White, UChicago d1ddabfea37c54abb50782cceb042ffe https://www.encodeproject.org/files/ENCFF434OZS/@@download/ENCFF434OZS.bigWig released s3://encode-public/2016/02/03/f53fc220-4f26-4b2a-b3c9-06301ac7839d/ENCFF434OZS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF036PRD fastq fastq reads ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 59161251 Kevin White, UChicago 55870ff5e387ac65e10b7d8f47429279 https://www.encodeproject.org/files/ENCFF036PRD/@@download/ENCFF036PRD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/28/9571822d-4ae7-4ed0-8fa1-7b4bbef104e2/ENCFF036PRD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF131IXU fastq fastq reads ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 559353038 Kevin White, UChicago 70718bd06426a9996a0a0323ef8091b5 https://www.encodeproject.org/files/ENCFF131IXU/@@download/ENCFF131IXU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/28/32f76786-4ab0-4880-90fc-1390f9c57fc5/ENCFF131IXU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF663RMK bam bam alignments ce10 ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF036PRD/, /files/ENCFF131IXU/ 897903505 Kevin White, UChicago bfe5d26366aa01797045cde7c90ccffb https://www.encodeproject.org/files/ENCFF663RMK/@@download/ENCFF663RMK.bam released s3://encode-public/2015/08/19/7a3a324e-8f70-4d3f-bac4-60e30ad7b69e/ENCFF663RMK.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF019TGN bigWig bigWig read-depth normalized signal ce10 ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF663RMK/ 9993603 Kevin White, UChicago daa04da5ec37bf6f1857fd6096b203dc https://www.encodeproject.org/files/ENCFF019TGN/@@download/ENCFF019TGN.bigWig released s3://encode-public/2015/10/02/e43ce36c-136a-4b23-8d39-5ee5346a9fb6/ENCFF019TGN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF550KHU bigWig bigWig signal of unique reads ce10 ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF663RMK/ 9984012 Kevin White, UChicago a5e15cf2233abdac8a0c9c1261b2c9bd https://www.encodeproject.org/files/ENCFF550KHU/@@download/ENCFF550KHU.bigWig released s3://encode-public/2015/10/02/d114bcf3-14dd-4f58-a38d-2b7f92246efb/ENCFF550KHU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF606HYP bam bam alignments ce11 ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF036PRD/, /files/ENCFF131IXU/ 898696003 Kevin White, UChicago c844de9ece2cc4fa3614397d1a8fb6cf https://www.encodeproject.org/files/ENCFF606HYP/@@download/ENCFF606HYP.bam released s3://encode-public/2016/01/16/1fa13208-d980-4504-bed9-fef02f0f1c94/ENCFF606HYP.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF333FTD bigWig bigWig signal of unique reads ce11 ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF606HYP/ 9979057 Kevin White, UChicago 00fb4d23c9b5a9109e836df39325901d https://www.encodeproject.org/files/ENCFF333FTD/@@download/ENCFF333FTD.bigWig released s3://encode-public/2016/02/03/f7debc9e-a7a7-4f2a-a8f2-bd212f80596c/ENCFF333FTD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF589NTM bigWig bigWig read-depth normalized signal ce11 ENCSR095HSC Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF606HYP/ 9985861 Kevin White, UChicago d2d16537b0829181c50b587cdee6d941 https://www.encodeproject.org/files/ENCFF589NTM/@@download/ENCFF589NTM.bigWig released s3://encode-public/2016/02/03/e5bc33cc-46fd-42ff-88fe-8b4b7220e5d2/ENCFF589NTM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF747TCT fastq fastq reads ENCSR446MQH Control ChIP-seq /worm-donors/ENCDO747XZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175541/'], '@type': ['Target', 'Item'], 'name': 'xbp-1-celegans', 'label': 'xbp-1', '@id': '/targets/xbp-1-celegans/', 'title': 'xbp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9cb746c9-90f7-4550-a7f6-2defb20b10e8', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 454446818 Kevin White, UChicago 501d4ca4b8628afe716abc5c9dbfb454 https://www.encodeproject.org/files/ENCFF747TCT/@@download/ENCFF747TCT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/bcf9e145-8574-4f85-b1d5-1febe59c4269/ENCFF747TCT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF542UEF bam bam alignments ce10 ENCSR446MQH Control ChIP-seq /worm-donors/ENCDO747XZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175541/'], '@type': ['Target', 'Item'], 'name': 'xbp-1-celegans', 'label': 'xbp-1', '@id': '/targets/xbp-1-celegans/', 'title': 'xbp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9cb746c9-90f7-4550-a7f6-2defb20b10e8', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF747TCT/ 651931433 Kevin White, UChicago 12941d53e978363d3ec9c103ce67b9a8 https://www.encodeproject.org/files/ENCFF542UEF/@@download/ENCFF542UEF.bam released s3://encode-public/2015/08/07/34290096-60de-4679-b15a-722e7f2d281a/ENCFF542UEF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF248YSI bigWig bigWig signal of unique reads ce10 ENCSR446MQH Control ChIP-seq /worm-donors/ENCDO747XZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175541/'], '@type': ['Target', 'Item'], 'name': 'xbp-1-celegans', 'label': 'xbp-1', '@id': '/targets/xbp-1-celegans/', 'title': 'xbp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9cb746c9-90f7-4550-a7f6-2defb20b10e8', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF542UEF/ 9969694 Kevin White, UChicago a652e4948f002ebb1c1cf944e2253d57 https://www.encodeproject.org/files/ENCFF248YSI/@@download/ENCFF248YSI.bigWig released s3://encode-public/2015/10/02/4488cb79-fe93-4824-b4a6-04ba34ca7238/ENCFF248YSI.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF392ITG bigWig bigWig read-depth normalized signal ce10 ENCSR446MQH Control ChIP-seq /worm-donors/ENCDO747XZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175541/'], '@type': ['Target', 'Item'], 'name': 'xbp-1-celegans', 'label': 'xbp-1', '@id': '/targets/xbp-1-celegans/', 'title': 'xbp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9cb746c9-90f7-4550-a7f6-2defb20b10e8', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF542UEF/ 9993920 Kevin White, UChicago 9494b946da11839f327c3d4ac5793c51 https://www.encodeproject.org/files/ENCFF392ITG/@@download/ENCFF392ITG.bigWig released s3://encode-public/2015/10/02/8d70bdeb-5d0c-42fc-b1b2-bff2b0a51aa9/ENCFF392ITG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF517KZE bam bam alignments ce11 ENCSR446MQH Control ChIP-seq /worm-donors/ENCDO747XZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175541/'], '@type': ['Target', 'Item'], 'name': 'xbp-1-celegans', 'label': 'xbp-1', '@id': '/targets/xbp-1-celegans/', 'title': 'xbp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9cb746c9-90f7-4550-a7f6-2defb20b10e8', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF747TCT/ 652480976 Kevin White, UChicago 70f8c5f0c9af87c190c4e975a1c24bf2 https://www.encodeproject.org/files/ENCFF517KZE/@@download/ENCFF517KZE.bam released s3://encode-public/2016/01/20/b277a8ff-ee93-43e0-9949-ea9993a352d2/ENCFF517KZE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF773XRQ bigWig bigWig signal of unique reads ce11 ENCSR446MQH Control ChIP-seq /worm-donors/ENCDO747XZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175541/'], '@type': ['Target', 'Item'], 'name': 'xbp-1-celegans', 'label': 'xbp-1', '@id': '/targets/xbp-1-celegans/', 'title': 'xbp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9cb746c9-90f7-4550-a7f6-2defb20b10e8', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF517KZE/ 9970288 Kevin White, UChicago cc5e80c101576943cabf895bea876502 https://www.encodeproject.org/files/ENCFF773XRQ/@@download/ENCFF773XRQ.bigWig released s3://encode-public/2016/02/03/f053a07c-6887-46e0-8134-c3b948833e6a/ENCFF773XRQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF164YUN bigWig bigWig read-depth normalized signal ce11 ENCSR446MQH Control ChIP-seq /worm-donors/ENCDO747XZQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175541/'], '@type': ['Target', 'Item'], 'name': 'xbp-1-celegans', 'label': 'xbp-1', '@id': '/targets/xbp-1-celegans/', 'title': 'xbp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9cb746c9-90f7-4550-a7f6-2defb20b10e8', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF517KZE/ 10005262 Kevin White, UChicago 27affddc744321bb9c3dcd531779b320 https://www.encodeproject.org/files/ENCFF164YUN/@@download/ENCFF164YUN.bigWig released s3://encode-public/2016/02/03/c09be774-235a-4cb9-8c52-aa73d24d3b9a/ENCFF164YUN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF154IBP fastq fastq reads ENCSR792LGD Control ChIP-seq /worm-donors/ENCDO011LQY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 650258181 Kevin White, UChicago 0e8b66c709eeaa232e04302a42ef2159 https://www.encodeproject.org/files/ENCFF154IBP/@@download/ENCFF154IBP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/a2041659-d3a5-4cec-bcde-e259ee383188/ENCFF154IBP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF865ZMA bam bam alignments ce10 ENCSR792LGD Control ChIP-seq /worm-donors/ENCDO011LQY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF154IBP/ 943993303 Kevin White, UChicago 95a678bcd01f558aa4b9dfa90819ac19 https://www.encodeproject.org/files/ENCFF865ZMA/@@download/ENCFF865ZMA.bam released s3://encode-public/2015/08/07/766d1c64-da29-4216-86c4-bd99a873f4ca/ENCFF865ZMA.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF665ZGY bigWig bigWig signal of unique reads ce10 ENCSR792LGD Control ChIP-seq /worm-donors/ENCDO011LQY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF865ZMA/ 9994811 Kevin White, UChicago 4208de960fecff4c35ade51bf7774c5d https://www.encodeproject.org/files/ENCFF665ZGY/@@download/ENCFF665ZGY.bigWig released s3://encode-public/2015/10/02/3d3d9c76-d1d6-4124-8d9a-a3fa83ea79db/ENCFF665ZGY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF568HDR bigWig bigWig read-depth normalized signal ce10 ENCSR792LGD Control ChIP-seq /worm-donors/ENCDO011LQY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF865ZMA/ 10010765 Kevin White, UChicago cf367225b9e3f00e1395370034e4edd1 https://www.encodeproject.org/files/ENCFF568HDR/@@download/ENCFF568HDR.bigWig released s3://encode-public/2015/10/02/c15d3b67-6716-42b8-83ed-5d3427e353ff/ENCFF568HDR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF029SHB bam bam alignments ce11 ENCSR792LGD Control ChIP-seq /worm-donors/ENCDO011LQY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF154IBP/ 944850688 Kevin White, UChicago 71b3cbe64eea9c738204957ec73d29d7 https://www.encodeproject.org/files/ENCFF029SHB/@@download/ENCFF029SHB.bam released s3://encode-public/2016/01/19/24ffa825-d987-4cab-866a-de0ef48af447/ENCFF029SHB.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF544CNR bigWig bigWig signal of unique reads ce11 ENCSR792LGD Control ChIP-seq /worm-donors/ENCDO011LQY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178577/'], '@type': ['Target', 'Item'], 'name': 'nhr-90-celegans', 'label': 'nhr-90', '@id': '/targets/nhr-90-celegans/', 'title': 'nhr-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '90026d80-71e2-4829-957e-c39f3e90b06f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF029SHB/ 9988926 Kevin White, UChicago eba3748a0ca777acf0db7edc5e11ded2 https://www.encodeproject.org/files/ENCFF544CNR/@@download/ENCFF544CNR.bigWig released s3://encode-public/2016/02/03/2105e24c-f861-4d4b-bb82-4698c2342d3c/ENCFF544CNR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF747QBF bigWig bigWig read-depth normalized signal ce11 ENCSR792LGD Control ChIP-seq /worm-donors/ENCDO011LQY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 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2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000XIG/ 515610648 Sherman Weissman, Yale 8daf9f4ed517ff824cba0acad47582dc https://www.encodeproject.org/files/ENCFF000XFK/@@download/ENCFF000XFK.bam archived s3://encode-public/2010/12/02/bd3e2c27-394f-4c4e-be1b-c761d8b10f3c/ENCFF000XFK.bam Lab custom hg19 archived low read depth insufficient read length, insufficient read depth ENCFF000XFL bigWig bigWig signal hg19 ENCSR000EZJ Control ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 404489471 Sherman Weissman, Yale 012bc88fe1abb2978c3f7df314c8e6f2 https://www.encodeproject.org/files/ENCFF000XFL/@@download/ENCFF000XFL.bigWig archived s3://encode-public/2010/12/02/248f434d-5515-42dd-938d-0a4a8ab83d84/ENCFF000XFL.bigWig Lab custom hg19 archived low read depth insufficient read length, insufficient read depth ENCFF000XFM bam bam alignments hg19 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIH/ 564245295 Sherman Weissman, Yale 69f4b0c19d5b4c97cfbd07ff3aaa9762 https://www.encodeproject.org/files/ENCFF000XFM/@@download/ENCFF000XFM.bam archived s3://encode-public/2010/12/02/6a7844df-0e50-438b-b048-234cae476be5/ENCFF000XFM.bam Lab custom hg19 archived low read depth insufficient read length, insufficient read depth ENCFF000XIG fastq fastq reads ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 407130754 Sherman Weissman, Yale d47ae8bfe8c27e2085d9c22ea22ea1d3 https://www.encodeproject.org/files/ENCFF000XIG/@@download/ENCFF000XIG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/7b3f7106-b80e-4cfb-96bc-b7d784469e7f/ENCFF000XIG.fastq.gz low read depth insufficient read length, insufficient read depth ENCFF000XIH fastq fastq reads ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 442269812 Sherman Weissman, Yale a11747b6bde11346a6589d9421c5ffb5 https://www.encodeproject.org/files/ENCFF000XIH/@@download/ENCFF000XIH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/12/02/26af36a9-bdb9-4a63-932a-1c85c088210b/ENCFF000XIH.fastq.gz low read depth insufficient read length, insufficient read depth ENCFF380EDG bam bam unfiltered alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000XIH/ 567483231 ENCODE Processing Pipeline d97933303bad88ef42eef4770df76684 https://www.encodeproject.org/files/ENCFF380EDG/@@download/ENCFF380EDG.bam released s3://encode-public/2016/10/26/8aed450c-c9ff-4a91-99ff-04cba329daa2/ENCFF380EDG.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF203JTC bam bam unfiltered alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000XIG/ 518450796 ENCODE Processing Pipeline fb213d80f5ef3e0e5de1c3f4ef7dc9a3 https://www.encodeproject.org/files/ENCFF203JTC/@@download/ENCFF203JTC.bam released s3://encode-public/2016/10/26/413461ac-382e-4c78-911d-731b0999e03c/ENCFF203JTC.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF169QRT bam bam alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000XIH/ 361705051 ENCODE Processing Pipeline 8b5a73e380de8147ac9ccda02b11da24 https://www.encodeproject.org/files/ENCFF169QRT/@@download/ENCFF169QRT.bam released s3://encode-public/2016/10/26/0b8c486d-4f1d-4225-af47-f4d8a76c7c87/ENCFF169QRT.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF264XNY bam bam alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000XIG/ 323533768 ENCODE Processing Pipeline c046cf54f8d55bf5d9b722923edf520d https://www.encodeproject.org/files/ENCFF264XNY/@@download/ENCFF264XNY.bam released s3://encode-public/2016/10/26/666989c9-efcd-4ef1-a59a-70f1afcdb190/ENCFF264XNY.bam ENCODE3 GRCh38 archived low read depth insufficient read length, insufficient read depth ENCFF164GCT bam bam unfiltered alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000XIG/ 492449409 ENCODE Processing Pipeline 5ac1b82143d5af90bc66947fe284dce1 https://www.encodeproject.org/files/ENCFF164GCT/@@download/ENCFF164GCT.bam released s3://encode-public/2020/10/27/c139f13a-b847-4a6e-826a-f30819da5e84/ENCFF164GCT.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF191JJZ bam bam alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000XIG/ 333846930 ENCODE Processing Pipeline e6524a011f8b942bac685a4a655a68d7 https://www.encodeproject.org/files/ENCFF191JJZ/@@download/ENCFF191JJZ.bam released s3://encode-public/2020/10/27/a8bde499-4693-4de3-9b0b-b5c72fe40c87/ENCFF191JJZ.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF535GNM bam bam unfiltered alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIH/, /files/ENCFF110MCL/ 541041405 ENCODE Processing Pipeline 10480d9b73deb2d072a17fd18c92ff65 https://www.encodeproject.org/files/ENCFF535GNM/@@download/ENCFF535GNM.bam released s3://encode-public/2020/10/27/7956d6a2-15da-4617-94c2-c5c2634c4377/ENCFF535GNM.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF202ILI bam bam alignments GRCh38 ENCSR000EZJ Control ChIP-seq /human-donors/ENCDO000AAB/ EFO:0002791 HeLa-S3 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000XIH/, /files/ENCFF110MCL/ 372410132 ENCODE Processing Pipeline 8871173d0f1b9e8bebcf1a24fd71e5a2 https://www.encodeproject.org/files/ENCFF202ILI/@@download/ENCFF202ILI.bam released s3://encode-public/2020/10/27/87131ac3-ec96-48d2-a57e-72be06616178/ENCFF202ILI.bam ENCODE4 v1.5.1 GRCh38 released low read depth insufficient read length, insufficient read depth ENCFF000WJV bam bam alignments hg19 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WKG/ 227231341 Michael Snyder, Stanford 7be7e1b865897a7a59b88b40741cf69e https://www.encodeproject.org/files/ENCFF000WJV/@@download/ENCFF000WJV.bam archived s3://encode-public/2012/07/01/fce922be-5a15-47ea-b3f1-644738356e85/ENCFF000WJV.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WJX bam bam alignments hg19 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WKH/ 236804565 Michael Snyder, Stanford 154d8acd1ed6866287a18e8f7c6ef900 https://www.encodeproject.org/files/ENCFF000WJX/@@download/ENCFF000WJX.bam archived s3://encode-public/2012/07/01/2f16e05e-1072-44f4-8153-4776db328e58/ENCFF000WJX.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WJZ bigWig bigWig signal hg19 ENCSR000EAP Control ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 288660508 Michael Snyder, Stanford d4ac16a8617b10d03d77d98a734a8447 https://www.encodeproject.org/files/ENCFF000WJZ/@@download/ENCFF000WJZ.bigWig archived s3://encode-public/2012/07/01/af877015-7752-4dda-9fb2-0040a5dd3c89/ENCFF000WJZ.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WKG fastq fastq reads ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 174032791 Michael Snyder, Stanford a24b457e2a437cc740918ede2365ab38 https://www.encodeproject.org/files/ENCFF000WKG/@@download/ENCFF000WKG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/eca461d1-56a0-4c02-9416-cdbaeb5fee6b/ENCFF000WKG.fastq.gz insufficient read length extremely low read depth ENCFF000WKH fastq fastq reads ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 184377088 Michael Snyder, Stanford f6dbeba4dbc728377465bceb82fff0c3 https://www.encodeproject.org/files/ENCFF000WKH/@@download/ENCFF000WKH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/a1e88d53-9bf1-4374-961b-b88590988b8e/ENCFF000WKH.fastq.gz insufficient read length extremely low read depth ENCFF401QOO bam bam unfiltered alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WKG/, /files/ENCFF643CGH/ 228400516 ENCODE Processing Pipeline 7ff021fa3f057fd739972e1eaf489f37 https://www.encodeproject.org/files/ENCFF401QOO/@@download/ENCFF401QOO.bam released s3://encode-public/2016/10/26/6c07f6e2-0917-4b70-aa30-438ed34cfcd7/ENCFF401QOO.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF363ORB bam bam unfiltered alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WKH/ 237866929 ENCODE Processing Pipeline fa9c9633f8e1d5dfb4177cd570700c4c https://www.encodeproject.org/files/ENCFF363ORB/@@download/ENCFF363ORB.bam released s3://encode-public/2016/10/26/7c74e712-e52b-4473-a93a-cbecac995b3c/ENCFF363ORB.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF084HQJ bam bam alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WKG/, /files/ENCFF643CGH/ 143609071 ENCODE Processing Pipeline 5c2d12964cda028a1fc083b5f69b8a18 https://www.encodeproject.org/files/ENCFF084HQJ/@@download/ENCFF084HQJ.bam released s3://encode-public/2016/10/26/a23848b0-95de-459b-aff3-2a93c228bbdb/ENCFF084HQJ.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF661MPU bam bam alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WKH/ 150147919 ENCODE Processing Pipeline 2757e4c33858514d6ce8469e959360cf https://www.encodeproject.org/files/ENCFF661MPU/@@download/ENCFF661MPU.bam released s3://encode-public/2016/10/26/90ed4e63-9c89-4b16-a999-826202d34b03/ENCFF661MPU.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF958VPW bam bam unfiltered alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WKG/ 214718211 ENCODE Processing Pipeline 2fed0a397b9c77966cf244d4e6962567 https://www.encodeproject.org/files/ENCFF958VPW/@@download/ENCFF958VPW.bam released s3://encode-public/2020/10/27/8eb749b1-6ec3-48e9-aba4-9964931700ee/ENCFF958VPW.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF238GOP bam bam unfiltered alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WKH/ 225052644 ENCODE Processing Pipeline 0d11bb5370754c6c7d451250ae362362 https://www.encodeproject.org/files/ENCFF238GOP/@@download/ENCFF238GOP.bam released s3://encode-public/2020/10/27/e55765bb-d21b-44a6-9158-0f961a5d789b/ENCFF238GOP.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF462XKX bam bam alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WKH/ 157117879 ENCODE Processing Pipeline 027ae994d2a5d37a9b5130afc895371b https://www.encodeproject.org/files/ENCFF462XKX/@@download/ENCFF462XKX.bam released s3://encode-public/2020/10/27/9f27b3fd-cf72-4657-ba37-4df5f020d427/ENCFF462XKX.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF897HYJ bam bam alignments GRCh38 ENCSR000EAP Control ChIP-seq /human-donors/ENCDO000ACE/ EFO:0005347 GM15510 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WKG/ 144308377 ENCODE Processing Pipeline 51b1370d118b41899f3a865ecf8561cf https://www.encodeproject.org/files/ENCFF897HYJ/@@download/ENCFF897HYJ.bam released s3://encode-public/2020/10/27/4a5d2a46-1958-40e6-98a4-029235dc937d/ENCFF897HYJ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF710GYU fastq fastq reads ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2907785175 Bing Ren, UCSD ba102ebd902473a74eb5183b3fd150d6 SRA:SRR3653015 https://www.encodeproject.org/files/ENCFF710GYU/@@download/ENCFF710GYU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/3db64cce-3a84-4900-9195-14d2e27cbe90/ENCFF710GYU.fastq.gz inconsistent platforms ENCFF292YPK fastq fastq reads ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2477311394 Bing Ren, UCSD bd138744752861ab4656a8d51c321033 SRA:SRR3653013 https://www.encodeproject.org/files/ENCFF292YPK/@@download/ENCFF292YPK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/3a635d2b-6c06-42e6-8b97-1a573e59b8e5/ENCFF292YPK.fastq.gz inconsistent platforms ENCFF592WTG bam bam alignments mm10-minimal ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF710GYU/ 2450721058 ENCODE Processing Pipeline 34ce276af4cd9412f2e1094a9faa6d18 https://www.encodeproject.org/files/ENCFF592WTG/@@download/ENCFF592WTG.bam archived s3://encode-public/2015/10/31/5bfc02d8-0b77-4dcd-be63-cdb5599929ac/ENCFF592WTG.bam inconsistent platforms ENCFF476GUX bam bam alignments mm10-minimal ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF292YPK/, /files/ENCFF806TVZ/ 2084372605 ENCODE Processing Pipeline ff772fef13d30882f10a50bf387185b1 https://www.encodeproject.org/files/ENCFF476GUX/@@download/ENCFF476GUX.bam archived s3://encode-public/2015/10/31/fc05f8fb-ee57-4077-82f0-bfabfd151306/ENCFF476GUX.bam inconsistent platforms ENCFF684JPM fastq fastq reads ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 175062888 Bing Ren, UCSD 455eb83ea5bb69e5abf29386e9e758f3 SRA:SRR3653016 https://www.encodeproject.org/files/ENCFF684JPM/@@download/ENCFF684JPM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/d06e8cb7-5b18-4d38-ae03-4dad02c81b84/ENCFF684JPM.fastq.gz inconsistent platforms ENCFF883NHJ fastq fastq reads ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 496965586 Bing Ren, UCSD 6aabcfffbdbc1020e78f80565b323d58 SRA:SRR3653014 https://www.encodeproject.org/files/ENCFF883NHJ/@@download/ENCFF883NHJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/18f3f0e2-8287-478b-9595-9138cc237084/ENCFF883NHJ.fastq.gz inconsistent platforms ENCFF473NYY bam bam unfiltered alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF292YPK/, /files/ENCFF018NEO/, /files/ENCFF883NHJ/ 3778384232 ENCODE Processing Pipeline 9d02aed17522abfc4c3da7f2aa4fb66a https://www.encodeproject.org/files/ENCFF473NYY/@@download/ENCFF473NYY.bam released s3://encode-public/2016/07/18/a9a5ad38-1642-48c0-bc0c-f0973fc13296/ENCFF473NYY.bam ENCODE3 mm10 archived inconsistent platforms ENCFF875QWM bam bam unfiltered alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF710GYU/, /files/ENCFF684JPM/ 3822137394 ENCODE Processing Pipeline c8ac4dfb5cdc5c9fdaf1281d680a2503 https://www.encodeproject.org/files/ENCFF875QWM/@@download/ENCFF875QWM.bam released s3://encode-public/2016/07/18/f1ac5193-c995-4adf-9c03-e33b3ac61f2e/ENCFF875QWM.bam ENCODE3 mm10 archived inconsistent platforms ENCFF285XPR bam bam alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF292YPK/, /files/ENCFF018NEO/, /files/ENCFF883NHJ/ 2606631329 ENCODE Processing Pipeline d25de6a07d61a023be378f379f251eb2 https://www.encodeproject.org/files/ENCFF285XPR/@@download/ENCFF285XPR.bam released s3://encode-public/2016/07/18/abfc965d-ff50-4b29-901d-41b2397cf6ab/ENCFF285XPR.bam ENCODE3 mm10 archived inconsistent platforms ENCFF627RIT bam bam alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF710GYU/, /files/ENCFF684JPM/ 2648315894 ENCODE Processing Pipeline 5b2a4e03bdb56793d331996210667cdb https://www.encodeproject.org/files/ENCFF627RIT/@@download/ENCFF627RIT.bam released s3://encode-public/2016/07/18/7885608c-01f9-4b0d-af15-9d4d1c76f084/ENCFF627RIT.bam ENCODE3 mm10 archived inconsistent platforms ENCFF637BKB bam bam alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF292YPK/, /files/ENCFF883NHJ/, /files/ENCFF309GLL/ 2687000342 ENCODE Processing Pipeline 97d4114b326317ec6e36962874dddb6a https://www.encodeproject.org/files/ENCFF637BKB/@@download/ENCFF637BKB.bam released s3://encode-public/2020/10/07/ada17aa8-3643-4169-a6fe-6af0a2e0c5a8/ENCFF637BKB.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF269VVE bam bam unfiltered alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF684JPM/, /files/ENCFF710GYU/, /files/ENCFF309GLL/ 3746152233 ENCODE Processing Pipeline 54c527d7ca360ec5895551b921481507 https://www.encodeproject.org/files/ENCFF269VVE/@@download/ENCFF269VVE.bam released s3://encode-public/2020/10/07/41bbbe5b-325d-4ffa-881b-5a53249a51dc/ENCFF269VVE.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF110FWP bam bam unfiltered alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF292YPK/, /files/ENCFF883NHJ/, /files/ENCFF309GLL/ 3689511558 ENCODE Processing Pipeline 9fac1adddf51e88c37c322c46967dba0 https://www.encodeproject.org/files/ENCFF110FWP/@@download/ENCFF110FWP.bam released s3://encode-public/2020/10/07/0c3e13de-611f-466c-a7d6-f6ac378c587f/ENCFF110FWP.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF916DDT bam bam alignments mm10 ENCSR780JSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF684JPM/, /files/ENCFF710GYU/, /files/ENCFF309GLL/ 2737994824 ENCODE Processing Pipeline fb7f72bf848cc95e792db9873508aee5 https://www.encodeproject.org/files/ENCFF916DDT/@@download/ENCFF916DDT.bam released s3://encode-public/2020/10/07/90974408-f75d-4b67-964d-ab7307f7f757/ENCFF916DDT.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF193RFA fastq fastq reads ENCSR181GRP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF045LUL/ 3806967536 Michael Snyder, Stanford 793d0335fde4114613820738480dabda https://www.encodeproject.org/files/ENCFF193RFA/@@download/ENCFF193RFA.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/8d89692a-48b3-41ff-b5f3-8e251e04c664/ENCFF193RFA.fastq.gz mild to moderate bottlenecking ENCFF045LUL fastq fastq reads ENCSR181GRP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF193RFA/ 3858974477 Michael Snyder, Stanford 8958a0f936fcc042b70818914968af29 https://www.encodeproject.org/files/ENCFF045LUL/@@download/ENCFF045LUL.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/33d2a6b2-6c6e-45ee-8c16-7e4fe7ae174a/ENCFF045LUL.fastq.gz mild to moderate bottlenecking ENCFF534GYZ bam bam unfiltered alignments GRCh38 ENCSR181GRP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF045LUL/, /files/ENCFF193RFA/ 6972885856 ENCODE Processing Pipeline 0b7d9f96c829461051e676322a1ac689 https://www.encodeproject.org/files/ENCFF534GYZ/@@download/ENCFF534GYZ.bam released s3://encode-public/2021/08/30/17bd6c63-30f0-4ab6-bf1b-19905c1462fb/ENCFF534GYZ.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF849ACE bam bam alignments GRCh38 ENCSR181GRP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF045LUL/, /files/ENCFF193RFA/ 4974531293 ENCODE Processing Pipeline 644a5b3902507c3766b256f65b65b39a https://www.encodeproject.org/files/ENCFF849ACE/@@download/ENCFF849ACE.bam released s3://encode-public/2021/08/30/c381b273-8019-4103-86b5-963dcd243e93/ENCFF849ACE.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF001NTS fastq fastq reads ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 single-ended 879449842 Michael Snyder, Stanford 52ed0b1ea8a9eb8f9284b23aa978a122 SRA:SRR5210714 https://www.encodeproject.org/files/ENCFF001NTS/@@download/ENCFF001NTS.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/17a5bc6b-b822-4e9f-9169-0a95785a0e3c/ENCFF001NTS.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF001NTV bam bam alignments mm9 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 27 /files/ENCFF001NTS/ 770518252 Michael Snyder, Stanford 5ee877112fa0ddf37a5d788bc2e2ff3c https://www.encodeproject.org/files/ENCFF001NTV/@@download/ENCFF001NTV.bam archived s3://encode-public/2012/08/01/91e9434c-f1a0-4850-afcc-9d5246ddcdcb/ENCFF001NTV.bam Lab custom mm9 archived mild to moderate bottlenecking, low read depth, low read length ENCFF001NTY bigWig bigWig signal mm9 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 /files/ENCFF001NTV/ 309268914 Michael Snyder, Stanford d99a34468ea3a93f6e4ae8815c957214 https://www.encodeproject.org/files/ENCFF001NTY/@@download/ENCFF001NTY.bigWig archived s3://encode-public/2012/08/01/144358f1-5ac2-4255-8a22-1e16d774a53c/ENCFF001NTY.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read depth, low read length ENCFF001NTU fastq fastq reads ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 single-ended 666960714 Michael Snyder, Stanford 44d7814ebefd61fae974541ffce4c785 SRA:SRR5210715 https://www.encodeproject.org/files/ENCFF001NTU/@@download/ENCFF001NTU.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2012/08/01/9d837a98-e2e3-4a87-b858-e078135602a6/ENCFF001NTU.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF038ZRC bam bam unfiltered alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTU/ 770632888 ENCODE Processing Pipeline e141df35d77876d1c6a386509a182440 https://www.encodeproject.org/files/ENCFF038ZRC/@@download/ENCFF038ZRC.bam released s3://encode-public/2016/10/26/ab7ed7c9-b270-4d81-bfae-547fbb5526cc/ENCFF038ZRC.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF479KKI bam bam alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTU/ 484965069 ENCODE Processing Pipeline 3da3933b158a48711790454f75f290ce https://www.encodeproject.org/files/ENCFF479KKI/@@download/ENCFF479KKI.bam released s3://encode-public/2016/10/26/91bd0282-5396-4fd4-a516-04b684eb5f86/ENCFF479KKI.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF627BNQ bam bam unfiltered alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTS/ 1004451753 ENCODE Processing Pipeline adc2d62c71fcb95cc0a2c6c88d29cd88 https://www.encodeproject.org/files/ENCFF627BNQ/@@download/ENCFF627BNQ.bam released s3://encode-public/2016/10/26/a1a5d844-496d-4f5b-97e1-7ffc786f6050/ENCFF627BNQ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF277LUN bam bam alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001NTS/ 648070830 ENCODE Processing Pipeline 8b1d785fd4e4ca6f0a83c7de63266432 https://www.encodeproject.org/files/ENCFF277LUN/@@download/ENCFF277LUN.bam released s3://encode-public/2016/10/26/8c656028-c7d2-47aa-a616-e4709063d3ed/ENCFF277LUN.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read depth, low read length ENCFF799UMR bam bam unfiltered alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTS/ 983586222 ENCODE Processing Pipeline 2adb5045d5e632ef79f707148baa1987 https://www.encodeproject.org/files/ENCFF799UMR/@@download/ENCFF799UMR.bam released s3://encode-public/2020/10/12/0c1b2e30-f3df-4419-bc5e-14fa48d1f44c/ENCFF799UMR.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF013HKT bam bam unfiltered alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTU/ 752677664 ENCODE Processing Pipeline 37512099cb8ef207674893f02cc92eb4 https://www.encodeproject.org/files/ENCFF013HKT/@@download/ENCFF013HKT.bam released s3://encode-public/2020/10/12/60bdfbae-805a-4e51-b2ea-882ee1b69c05/ENCFF013HKT.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF974HRZ bam bam alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTS/ 686504003 ENCODE Processing Pipeline 337eefcc7e1ab7f82a1cd57d965e984f https://www.encodeproject.org/files/ENCFF974HRZ/@@download/ENCFF974HRZ.bam released s3://encode-public/2020/10/12/713f8f58-d2ac-4f32-8e69-786b18ed772e/ENCFF974HRZ.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF253BGG bam bam alignments mm10 ENCSR000ADU Control ChIP-seq /mouse-donors/ENCDO073AAA/ EFO:0003971 MEL cell line Mus musculus dimethyl sulfoxide 2 percent 5 day DNA 2012-06-15 ENCODE sonication (generic) 150-350 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001NTU/ 514065473 ENCODE Processing Pipeline e3998ca0bc2ceb2099d68dc88688a272 https://www.encodeproject.org/files/ENCFF253BGG/@@download/ENCFF253BGG.bam released s3://encode-public/2020/10/12/27ff119b-d7ef-4165-a157-b4695804f8fe/ENCFF253BGG.bam ENCODE4 v1.5.1 mm10 released mild to moderate bottlenecking, low read depth, low read length ENCFF318EWP fastq fastq reads ENCSR661ZUK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 single-ended 1656049925 Richard Myers, HAIB b05c5ba44159aa1fff4234f6cd10d142 SRA:SRR16813840 https://www.encodeproject.org/files/ENCFF318EWP/@@download/ENCFF318EWP.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/06/02/85510565-5bda-4f37-afde-ea94ceb9446b/ENCFF318EWP.fastq.gz mild to moderate bottlenecking, low read depth ENCFF272GBE bam bam alignments GRCh38 ENCSR661ZUK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF318EWP/ 873488495 ENCODE Processing Pipeline 074ccc3cd52f2254f1dda89eab483940 https://www.encodeproject.org/files/ENCFF272GBE/@@download/ENCFF272GBE.bam released s3://encode-public/2021/07/21/69993027-9193-40ae-9300-699bdad97c64/ENCFF272GBE.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF093UJE bam bam unfiltered alignments GRCh38 ENCSR661ZUK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2021-07-22 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF318EWP/ 1694780700 ENCODE Processing Pipeline e97b9c824171be5cb9df83d9f3a112c4 https://www.encodeproject.org/files/ENCFF093UJE/@@download/ENCFF093UJE.bam released s3://encode-public/2021/07/21/78aa025c-2859-4ece-8079-967f041977d5/ENCFF093UJE.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF654PQX bam bam unfiltered alignments hg19 ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BGA/ 2172045052 ENCODE Processing Pipeline 174a7dc7b4061ad7e2b0f4ceb0ace44b https://www.encodeproject.org/files/ENCFF654PQX/@@download/ENCFF654PQX.bam released s3://encode-public/2018/02/22/ed38880f-34cc-4586-86c8-22912462a555/ENCFF654PQX.bam ENCODE3 hg19 archived ENCFF002BGA fastq fastq reads ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 single-ended 2014578858 Richard Myers, HAIB af1ee7aa677f9f59f59ffbe4d5c51aea SRA:SRR5338987 https://www.encodeproject.org/files/ENCFF002BGA/@@download/ENCFF002BGA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/04/04/64b71db0-d58e-41b6-82d2-4933093962ba/ENCFF002BGA.fastq.gz ENCFF223KCT bam bam alignments hg19 ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BGA/ 1652769823 ENCODE Processing Pipeline 09ede5ff94389a13cbbdd28b30f01ffc https://www.encodeproject.org/files/ENCFF223KCT/@@download/ENCFF223KCT.bam archived s3://encode-public/2015/10/28/d3b8d924-9456-4c25-b713-cdaf9b4e5142/ENCFF223KCT.bam ENCODE3 hg19 archived ENCFF555CLQ bam bam unfiltered alignments GRCh38 ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF002BGA/ 2173714245 ENCODE Processing Pipeline d102ec62ded6100aecf0b583a8a91566 https://www.encodeproject.org/files/ENCFF555CLQ/@@download/ENCFF555CLQ.bam released s3://encode-public/2016/05/06/e779be37-de91-4ce1-ad50-0a7058b5a9ff/ENCFF555CLQ.bam ENCODE3 GRCh38 archived ENCFF747NOF bam bam alignments GRCh38 ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF002BGA/ 1659961587 ENCODE Processing Pipeline 500510a9b1bb11eef25e1c365be0ca55 https://www.encodeproject.org/files/ENCFF747NOF/@@download/ENCFF747NOF.bam released s3://encode-public/2016/05/06/36aa3d05-8d71-4ff6-b098-e183edeec333/ENCFF747NOF.bam ENCODE3 GRCh38 archived ENCFF787RYL bam bam alignments hg19 ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF002BGA/ 1652769852 ENCODE Processing Pipeline 6914349ca2b16f33449fb856fa9acdb0 https://www.encodeproject.org/files/ENCFF787RYL/@@download/ENCFF787RYL.bam released s3://encode-public/2016/11/16/efcc44f5-d6f6-4e94-aa8c-c534f719e979/ENCFF787RYL.bam ENCODE3 hg19 archived ENCFF629RGS bam bam unfiltered alignments GRCh38 ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF002BGA/ 2169871719 ENCODE Processing Pipeline 45975b3f7d0565f64502c09606e2850c https://www.encodeproject.org/files/ENCFF629RGS/@@download/ENCFF629RGS.bam released s3://encode-public/2020/11/05/c865d950-f116-4054-97be-58639660df9d/ENCFF629RGS.bam ENCODE4 v1.6.1 GRCh38 released ENCFF923QPK bam bam alignments GRCh38 ENCSR596QDC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE see document 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF002BGA/ 1723773438 ENCODE Processing Pipeline 122231dc633284bb3ec00314a94671b2 https://www.encodeproject.org/files/ENCFF923QPK/@@download/ENCFF923QPK.bam released s3://encode-public/2020/11/05/fa44b310-ba40-4e02-9ced-7be8214b52a7/ENCFF923QPK.bam ENCODE4 v1.6.1 GRCh38 released ENCFF808ZFF fastq fastq reads ENCSR357LCN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF392HNC/ 2604532700 Michael Snyder, Stanford 0aab0c52ff2bc38fe99db9872794dd9b https://www.encodeproject.org/files/ENCFF808ZFF/@@download/ENCFF808ZFF.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/06/614113a6-d846-4daa-9462-4426c4e969cf/ENCFF808ZFF.fastq.gz mild to moderate bottlenecking ENCFF392HNC fastq fastq reads ENCSR357LCN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF808ZFF/ 2717023246 Michael Snyder, Stanford 5c181cbee0de36f2529f81f036650a1f https://www.encodeproject.org/files/ENCFF392HNC/@@download/ENCFF392HNC.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/06/0a8beab7-ffec-43ea-9c82-3a070379dcc3/ENCFF392HNC.fastq.gz mild to moderate bottlenecking ENCFF831MJR bam bam unfiltered alignments GRCh38 ENCSR357LCN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF392HNC/, /files/ENCFF808ZFF/, /files/ENCFF110MCL/ 5029206840 ENCODE Processing Pipeline 9483f4e22621c938fea582e8edda28e9 https://www.encodeproject.org/files/ENCFF831MJR/@@download/ENCFF831MJR.bam released s3://encode-public/2021/10/22/51efd0f3-6b55-45bb-b412-5c884ddc7dba/ENCFF831MJR.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF949TWC bam bam alignments GRCh38 ENCSR357LCN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF392HNC/, /files/ENCFF808ZFF/, /files/ENCFF110MCL/ 3648423290 ENCODE Processing Pipeline 76d4c8d8b8916be39cb232527543375c https://www.encodeproject.org/files/ENCFF949TWC/@@download/ENCFF949TWC.bam released s3://encode-public/2021/10/22/28f4cb6b-827c-4ff6-82df-60d946a0903f/ENCFF949TWC.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF274HXM fastq fastq reads ENCSR065HVA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF244KAL/ 2643651071 Michael Snyder, Stanford 0c596c7eae2d7333f53ba470b9333656 https://www.encodeproject.org/files/ENCFF274HXM/@@download/ENCFF274HXM.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/07/17cac941-c7f3-4591-bb1a-1a6e49568cfc/ENCFF274HXM.fastq.gz mild to moderate bottlenecking ENCFF244KAL fastq fastq reads ENCSR065HVA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF274HXM/ 2730217290 Michael Snyder, Stanford e4f898a9e00d14827ff556666f186afa https://www.encodeproject.org/files/ENCFF244KAL/@@download/ENCFF244KAL.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/07/e31df879-5a0c-4c17-90d3-60dd00f50895/ENCFF244KAL.fastq.gz mild to moderate bottlenecking ENCFF118QUK bam bam unfiltered alignments GRCh38 ENCSR065HVA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF244KAL/, /files/ENCFF274HXM/ 4900866632 ENCODE Processing Pipeline d4aa13d6e3b1e88ecd0c63ee8e4907ca https://www.encodeproject.org/files/ENCFF118QUK/@@download/ENCFF118QUK.bam released s3://encode-public/2021/10/22/49ff315f-230b-4793-9411-476179681953/ENCFF118QUK.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF570NOM bam bam alignments GRCh38 ENCSR065HVA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF244KAL/, /files/ENCFF274HXM/ 3398132823 ENCODE Processing Pipeline fbf49a0b7898df29a52b7235d580ed1e https://www.encodeproject.org/files/ENCFF570NOM/@@download/ENCFF570NOM.bam released s3://encode-public/2021/10/22/9b44326c-0efa-4d27-b7ec-b112d3c0e94c/ENCFF570NOM.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF819UXB fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 411687648 Bradley Bernstein, Broad 22db89c8de4e9eaed880f4a0b874da65 SRA:SRR16811803 https://www.encodeproject.org/files/ENCFF819UXB/@@download/ENCFF819UXB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a3584bbb-350f-42de-b120-7ae1999073c4/ENCFF819UXB.fastq.gz ENCFF651MRW fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 403802303 Bradley Bernstein, Broad 571186f7c85b278bc398980e5e9d9445 SRA:SRR16811804 https://www.encodeproject.org/files/ENCFF651MRW/@@download/ENCFF651MRW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/47d18678-9efa-4752-99e1-f698e03e038f/ENCFF651MRW.fastq.gz ENCFF417QPY fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 407953742 Bradley Bernstein, Broad 062b4c11f427c4f38c28be469bdc97de SRA:SRR16811805 https://www.encodeproject.org/files/ENCFF417QPY/@@download/ENCFF417QPY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/9295fd52-e7b0-4302-9731-47394cb144fa/ENCFF417QPY.fastq.gz ENCFF608DDO fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 407060351 Bradley Bernstein, Broad be158309c801a41c26212b11ac58588b SRA:SRR16811806 https://www.encodeproject.org/files/ENCFF608DDO/@@download/ENCFF608DDO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/0bc7f6b9-5d1d-450c-91d8-a410151a5ec4/ENCFF608DDO.fastq.gz ENCFF307ECS fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 349881987 Bradley Bernstein, Broad d98b2906b8abd7e64435f701a6301b80 SRA:SRR16811799 https://www.encodeproject.org/files/ENCFF307ECS/@@download/ENCFF307ECS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e097c335-e790-4369-9a69-6c3dadcf4b46/ENCFF307ECS.fastq.gz ENCFF145CLI fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 365657803 Bradley Bernstein, Broad 5f1ed797130355d5bbc8734634734fd4 SRA:SRR16811800 https://www.encodeproject.org/files/ENCFF145CLI/@@download/ENCFF145CLI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/18ae522e-ce0f-401e-803b-6094b96c8b1c/ENCFF145CLI.fastq.gz ENCFF721LTR fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 351953675 Bradley Bernstein, Broad be55ac03bcea5572bfbeacea88b1d6a5 SRA:SRR16811801 https://www.encodeproject.org/files/ENCFF721LTR/@@download/ENCFF721LTR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/72be122e-e121-4097-8208-0786618c07a3/ENCFF721LTR.fastq.gz ENCFF178ECL fastq fastq reads ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 353367244 Bradley Bernstein, Broad 27206231d4ae2387d11187e57a3cd406 SRA:SRR16811802 https://www.encodeproject.org/files/ENCFF178ECL/@@download/ENCFF178ECL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/dc882bbc-86bd-48f2-869c-f4095ab39934/ENCFF178ECL.fastq.gz ENCFF180SSW bam bam unfiltered alignments GRCh38 ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF819UXB/, /files/ENCFF608DDO/, /files/ENCFF145CLI/, /files/ENCFF417QPY/, /files/ENCFF651MRW/, /files/ENCFF178ECL/, /files/ENCFF307ECS/, /files/ENCFF721LTR/ 3046968335 ENCODE Processing Pipeline 870c8ff61afe3f787d639470cf008982 https://www.encodeproject.org/files/ENCFF180SSW/@@download/ENCFF180SSW.bam released s3://encode-public/2021/09/15/ea696fcf-bd1a-41e9-b4be-3817fadf3480/ENCFF180SSW.bam ENCODE4 v1.8.0 GRCh38 released ENCFF375JDY bam bam alignments GRCh38 ENCSR534WQA Control ChIP-seq /human-donors/ENCDO070VNS/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF819UXB/, /files/ENCFF608DDO/, /files/ENCFF145CLI/, /files/ENCFF417QPY/, /files/ENCFF651MRW/, /files/ENCFF178ECL/, /files/ENCFF307ECS/, /files/ENCFF721LTR/ 2577727399 ENCODE Processing Pipeline b95843571da6bd60ccd53e3c08f60c82 https://www.encodeproject.org/files/ENCFF375JDY/@@download/ENCFF375JDY.bam released s3://encode-public/2021/09/15/8383018d-819e-483b-841d-448dadef0d6e/ENCFF375JDY.bam ENCODE4 v1.8.0 GRCh38 released ENCFF193VNF bam bam unfiltered alignments hg19 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF299QHU/ 2488400190 ENCODE Processing Pipeline f85c79930d879d6a789204db3e35757f https://www.encodeproject.org/files/ENCFF193VNF/@@download/ENCFF193VNF.bam released s3://encode-public/2018/02/20/6e0ec407-a926-4a59-8ca0-ef206b28cc25/ENCFF193VNF.bam ENCODE3 hg19 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF285EAP bam bam unfiltered alignments hg19 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF531PAG/ 2886061535 ENCODE Processing Pipeline 0988964235bfa2283b1fdd3af4dd4c37 https://www.encodeproject.org/files/ENCFF285EAP/@@download/ENCFF285EAP.bam released s3://encode-public/2018/02/21/fa2e3d5c-bfbe-4ee0-9410-03f921378584/ENCFF285EAP.bam ENCODE3 hg19 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF299QHU fastq fastq reads ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 single-ended 1943999851 Bradley Bernstein, Broad b401a98cc117c6eeb6cd51a536397f79 SRA:SRR5339385 https://www.encodeproject.org/files/ENCFF299QHU/@@download/ENCFF299QHU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/02/20/61e71d41-d356-4d7d-b378-24a2906de21a/ENCFF299QHU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF531PAG fastq fastq reads ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 single-ended 2259522884 Bradley Bernstein, Broad 28a6b54b47a3200e4edb405fc30b4fe1 SRA:SRR5339384 https://www.encodeproject.org/files/ENCFF531PAG/@@download/ENCFF531PAG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/02/20/7ca1d304-5f07-4fe2-9394-1fd72f40dcdd/ENCFF531PAG.fastq.gz missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF201DDL bam bam alignments hg19 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 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neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF531PAG/ 2035217651 ENCODE Processing Pipeline 9c8fe59c1714558ada3d6667bced316d https://www.encodeproject.org/files/ENCFF307KLI/@@download/ENCFF307KLI.bam released s3://encode-public/2015/12/17/f8050788-cd04-48f7-a711-b15078885273/ENCFF307KLI.bam ENCODE3 hg19 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF484PBB bam bam unfiltered alignments GRCh38 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF299QHU/ 2501136607 ENCODE Processing Pipeline 5864804de5873c53b53c3c5fdd7da740 https://www.encodeproject.org/files/ENCFF484PBB/@@download/ENCFF484PBB.bam released s3://encode-public/2016/05/06/f021a722-bb30-46ac-81eb-6a891488d3c3/ENCFF484PBB.bam ENCODE3 GRCh38 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF037MPZ bam bam unfiltered alignments GRCh38 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF531PAG/ 2902676939 ENCODE Processing Pipeline f1d218e9d9e4e856c151f5ffaa37d046 https://www.encodeproject.org/files/ENCFF037MPZ/@@download/ENCFF037MPZ.bam released s3://encode-public/2016/05/06/0cefb952-5139-4b1b-9760-bd6154e3a540/ENCFF037MPZ.bam ENCODE3 GRCh38 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF339IBW bam bam alignments GRCh38 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF299QHU/ 1658254746 ENCODE Processing Pipeline 204a29d94a0b4a4174e6724c9f94509f https://www.encodeproject.org/files/ENCFF339IBW/@@download/ENCFF339IBW.bam released s3://encode-public/2016/05/06/0430a5ee-35ee-4b61-9e5d-16f0949be87b/ENCFF339IBW.bam ENCODE3 GRCh38 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF930INE bam bam alignments GRCh38 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF531PAG/ 2034758608 ENCODE Processing Pipeline c28ebc331f850b33f1a3f2deb4cad1d1 https://www.encodeproject.org/files/ENCFF930INE/@@download/ENCFF930INE.bam released s3://encode-public/2016/05/06/89e14308-8fdf-4387-84ba-5d5d8ca004d7/ENCFF930INE.bam ENCODE3 GRCh38 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF048ZLM bam bam unfiltered alignments GRCh38 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF299QHU/, /files/ENCFF110MCL/ 2424698691 ENCODE Processing Pipeline 906b37fa87f62161a5a6a1bc84f696aa https://www.encodeproject.org/files/ENCFF048ZLM/@@download/ENCFF048ZLM.bam released s3://encode-public/2020/08/20/600aa3c4-3836-4392-8e61-917e7e75782c/ENCFF048ZLM.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF054AFA bam bam alignments GRCh38 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF531PAG/ 2838492693 ENCODE Processing Pipeline 7b5420579573a52c83edf90a59eac692 https://www.encodeproject.org/files/ENCFF184VBT/@@download/ENCFF184VBT.bam released s3://encode-public/2020/08/20/79ea2b96-c8f4-4600-86f2-9b6c43d6b953/ENCFF184VBT.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF846DEZ bam bam alignments GRCh38 ENCSR803UDX Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002259 neuroepithelial stem cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF299QHU/, /files/ENCFF110MCL/ 1811014472 ENCODE Processing Pipeline 332f94c8060c42c5e6f633622a2feeee https://www.encodeproject.org/files/ENCFF846DEZ/@@download/ENCFF846DEZ.bam released s3://encode-public/2020/08/20/7945e18f-3c3e-48e5-8e69-6ea960d06212/ENCFF846DEZ.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF594LOW fastq fastq reads ENCSR293HER Control ChIP-seq /worm-donors/ENCDO895EBF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187182/'], '@type': ['Target', 'Item'], 'name': 'K09A11.1-celegans', 'label': 'K09A11.1', '@id': '/targets/K09A11.1-celegans/', 'title': 'K09A11.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6f7a1621-0c28-4938-b2d3-a01d43562d73', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_2 50 single-ended 145823466 Kevin White, UChicago ed0221cab7f8ad752a45c6b8fea204bc https://www.encodeproject.org/files/ENCFF594LOW/@@download/ENCFF594LOW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF782YDU/ released s3://encode-public/2015/07/30/1e5a7d27-6a37-46d3-98bb-c19fb3084b53/ENCFF594LOW.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF786DOW fastq fastq reads ENCSR293HER Control ChIP-seq /worm-donors/ENCDO895EBF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187182/'], '@type': ['Target', 'Item'], 'name': 'K09A11.1-celegans', 'label': 'K09A11.1', '@id': '/targets/K09A11.1-celegans/', 'title': 'K09A11.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6f7a1621-0c28-4938-b2d3-a01d43562d73', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 32 /files/ENCFF987UMF/, /files/ENCFF594LOW/, /files/ENCFF786DOW/ 299587770 Kevin White, UChicago ad484ce31d65eb169d91333d08725e26 https://www.encodeproject.org/files/ENCFF910ZOF/@@download/ENCFF910ZOF.bam released s3://encode-public/2015/08/19/527b50b1-d9a3-4eff-b76d-82db44f5e44d/ENCFF910ZOF.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF370VEO bigWig bigWig read-depth normalized signal ce10 ENCSR293HER Control ChIP-seq /worm-donors/ENCDO895EBF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187182/'], '@type': ['Target', 'Item'], 'name': 'K09A11.1-celegans', 'label': 'K09A11.1', '@id': '/targets/K09A11.1-celegans/', 'title': 'K09A11.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6f7a1621-0c28-4938-b2d3-a01d43562d73', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 /files/ENCFF910ZOF/ 10007925 Kevin White, UChicago 21e3c2b6884ec8c05d0775833912df8b https://www.encodeproject.org/files/ENCFF370VEO/@@download/ENCFF370VEO.bigWig released s3://encode-public/2015/10/02/dca8b557-4f49-437c-bab2-3ea3612adffc/ENCFF370VEO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF663PHX bigWig bigWig signal of unique reads ce10 ENCSR293HER Control ChIP-seq /worm-donors/ENCDO895EBF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187182/'], '@type': ['Target', 'Item'], 'name': 'K09A11.1-celegans', 'label': 'K09A11.1', '@id': '/targets/K09A11.1-celegans/', 'title': 'K09A11.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6f7a1621-0c28-4938-b2d3-a01d43562d73', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 /files/ENCFF910ZOF/ 10064447 Kevin White, UChicago f74431bf522395c079af5e982beb2dfa https://www.encodeproject.org/files/ENCFF663PHX/@@download/ENCFF663PHX.bigWig released s3://encode-public/2015/10/02/4434c068-4980-4eba-9a9a-505607a40c23/ENCFF663PHX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF575XBS bam bam alignments ce11 ENCSR293HER Control ChIP-seq /worm-donors/ENCDO895EBF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187182/'], '@type': ['Target', 'Item'], 'name': 'K09A11.1-celegans', 'label': 'K09A11.1', '@id': '/targets/K09A11.1-celegans/', 'title': 'K09A11.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6f7a1621-0c28-4938-b2d3-a01d43562d73', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 32 /files/ENCFF586MOL/, /files/ENCFF594LOW/, /files/ENCFF786DOW/ 299940618 Kevin White, UChicago 531ea4fdffc2edccc26a10f73dd3382b https://www.encodeproject.org/files/ENCFF575XBS/@@download/ENCFF575XBS.bam released s3://encode-public/2016/02/02/828cb101-4ef7-484b-9a79-8f7a75d5ccb9/ENCFF575XBS.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF154DWJ bigWig bigWig signal of unique reads ce11 ENCSR293HER Control ChIP-seq /worm-donors/ENCDO895EBF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187182/'], '@type': ['Target', 'Item'], 'name': 'K09A11.1-celegans', 'label': 'K09A11.1', '@id': '/targets/K09A11.1-celegans/', 'title': 'K09A11.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6f7a1621-0c28-4938-b2d3-a01d43562d73', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1, 1_2 /files/ENCFF575XBS/ 10071615 Kevin White, UChicago 3ca01c91eb44bb7f9e4a657c7da55f23 https://www.encodeproject.org/files/ENCFF154DWJ/@@download/ENCFF154DWJ.bigWig released s3://encode-public/2016/02/03/2a77538a-7e9f-4eeb-af03-79ed0c8215a8/ENCFF154DWJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF489NPD bigWig bigWig read-depth normalized signal ce11 ENCSR293HER Control ChIP-seq /worm-donors/ENCDO895EBF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187182/'], '@type': ['Target', 'Item'], 'name': 'K09A11.1-celegans', 'label': 'K09A11.1', '@id': '/targets/K09A11.1-celegans/', 'title': 'K09A11.1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6f7a1621-0c28-4938-b2d3-a01d43562d73', 'status': 'released'} 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ENCSR732BRB Control ChIP-seq /human-donors/ENCDO754RFQ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF057EWO/, /files/ENCFF022KLQ/, /files/ENCFF160VTF/, /files/ENCFF082AEM/, /files/ENCFF247IJT/, /files/ENCFF751ZMP/, /files/ENCFF968JJZ/, /files/ENCFF081REG/, /files/ENCFF626IQA/, /files/ENCFF368TFJ/, /files/ENCFF928LXR/, /files/ENCFF110MCL/, /files/ENCFF808ANM/ 3338046600 ENCODE Processing Pipeline 7878129a2ec8f2e67c0a90afd4ad6d18 https://www.encodeproject.org/files/ENCFF229QPQ/@@download/ENCFF229QPQ.bam released s3://encode-public/2021/09/14/0e706a8e-7fcc-4dbb-ad09-79d634782709/ENCFF229QPQ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF436QPK fastq fastq reads ENCSR284TTZ Control ChIP-seq /worm-donors/ENCDO857NQX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 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/worm-donors/ENCDO857NQX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183219/'], '@type': ['Target', 'Item'], 'name': 'odd-2-celegans', 'label': 'odd-2', '@id': '/targets/odd-2-celegans/', 'title': 'odd-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a1fd6d1d-3922-4d9c-91b9-03d4dac71532', 'status': 'released'} DNA 2019-01-26 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF436QPK/ 99476117 Kevin White, UChicago cdb7fb65bc9b086cd303b9e68ed35780 https://www.encodeproject.org/files/ENCFF202JSE/@@download/ENCFF202JSE.bam released s3://encode-public/2015/08/07/16f88f95-1e5a-48eb-bd6e-6b9e74c45a7f/ENCFF202JSE.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF151QNG bigWig bigWig read-depth normalized signal ce10 ENCSR284TTZ Control ChIP-seq /worm-donors/ENCDO857NQX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183219/'], '@type': ['Target', 'Item'], 'name': 'odd-2-celegans', 'label': 'odd-2', '@id': '/targets/odd-2-celegans/', 'title': 'odd-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a1fd6d1d-3922-4d9c-91b9-03d4dac71532', 'status': 'released'} DNA 2019-01-26 modERN sonication (generic microtip) 1 1_1 /files/ENCFF202JSE/ 9988659 Kevin White, UChicago 4812f669a480345c0cea3060d4385a5c https://www.encodeproject.org/files/ENCFF151QNG/@@download/ENCFF151QNG.bigWig released s3://encode-public/2015/09/18/55455fb1-0742-40e2-a73a-7c54cf648ff5/ENCFF151QNG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF980YBA bigWig bigWig signal of unique reads ce10 ENCSR284TTZ Control ChIP-seq /worm-donors/ENCDO857NQX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183219/'], '@type': ['Target', 'Item'], 'name': 'odd-2-celegans', 'label': 'odd-2', '@id': '/targets/odd-2-celegans/', 'title': 'odd-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a1fd6d1d-3922-4d9c-91b9-03d4dac71532', 'status': 'released'} DNA 2019-01-26 modERN sonication (generic microtip) 1 1_1 /files/ENCFF202JSE/ 10030171 Kevin White, UChicago 93fb558a13f1cd4c9c0faf682de77a84 https://www.encodeproject.org/files/ENCFF980YBA/@@download/ENCFF980YBA.bigWig released s3://encode-public/2015/09/18/f96bc6aa-d61b-4809-a3c4-ef8a39b93125/ENCFF980YBA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF440SQP bam bam alignments ce11 ENCSR284TTZ Control ChIP-seq /worm-donors/ENCDO857NQX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183219/'], '@type': ['Target', 'Item'], 'name': 'odd-2-celegans', 'label': 'odd-2', '@id': '/targets/odd-2-celegans/', 'title': 'odd-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a1fd6d1d-3922-4d9c-91b9-03d4dac71532', 'status': 'released'} DNA 2019-01-26 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF436QPK/ 99580295 Kevin White, UChicago 8846681fd5d1d7c272b5a1eb53d92106 https://www.encodeproject.org/files/ENCFF440SQP/@@download/ENCFF440SQP.bam released s3://encode-public/2016/01/19/3660e55f-a26b-4a7a-82c2-6cc46c6317f8/ENCFF440SQP.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF477AVY bigWig bigWig signal of unique reads ce11 ENCSR284TTZ Control ChIP-seq /worm-donors/ENCDO857NQX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183219/'], '@type': ['Target', 'Item'], 'name': 'odd-2-celegans', 'label': 'odd-2', '@id': '/targets/odd-2-celegans/', 'title': 'odd-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a1fd6d1d-3922-4d9c-91b9-03d4dac71532', 'status': 'released'} DNA 2019-01-26 modERN sonication (generic microtip) 1 1_1 /files/ENCFF440SQP/ 10029982 Kevin White, UChicago 5018c2fd7bc1b17399fb0bc830307d28 https://www.encodeproject.org/files/ENCFF477AVY/@@download/ENCFF477AVY.bigWig released s3://encode-public/2016/02/03/081b64cd-5cb6-4f7a-a918-b9d79dbb6cea/ENCFF477AVY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF238XZS bigWig bigWig read-depth normalized signal ce11 ENCSR284TTZ Control ChIP-seq /worm-donors/ENCDO857NQX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183219/'], '@type': ['Target', 'Item'], 'name': 'odd-2-celegans', 'label': 'odd-2', '@id': '/targets/odd-2-celegans/', 'title': 'odd-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a1fd6d1d-3922-4d9c-91b9-03d4dac71532', 'status': 'released'} DNA 2019-01-26 modERN sonication (generic microtip) 1 1_1 /files/ENCFF440SQP/ 9987752 Kevin White, UChicago 817b01be62966fbdb12596746acd3073 https://www.encodeproject.org/files/ENCFF238XZS/@@download/ENCFF238XZS.bigWig released s3://encode-public/2016/02/03/454fc592-8508-4ea4-8cea-dda89a6a1a73/ENCFF238XZS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF533UCC fastq fastq reads ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 single-ended 2106117657 Bradley Bernstein, Broad d952cf3b4dfee9dfa0fc11368ce786c4 SRA:SRR5339124 https://www.encodeproject.org/files/ENCFF533UCC/@@download/ENCFF533UCC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/02/20/305c43bb-609a-4cea-8584-1f28dc1dac99/ENCFF533UCC.fastq.gz missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF018HGJ bam bam unfiltered alignments GRCh38 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF533UCC/ 2620830282 ENCODE Processing Pipeline 19909a07cce20f03e943d48f6b98606c https://www.encodeproject.org/files/ENCFF018HGJ/@@download/ENCFF018HGJ.bam released s3://encode-public/2020/09/17/71530e17-544e-42cb-b2ed-c1a00a5b4434/ENCFF018HGJ.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF538NBO bam bam alignments GRCh38 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF533UCC/ 1935075302 ENCODE Processing Pipeline 4aba8ba8545ef11411fdfff4d356c9d2 https://www.encodeproject.org/files/ENCFF538NBO/@@download/ENCFF538NBO.bam released s3://encode-public/2020/09/17/cc42e2ce-4377-4476-bbe1-2e202099d532/ENCFF538NBO.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF876LYB fastq fastq reads ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 76 paired-ended 1 /files/ENCFF005CCH/ 3093582683 Bradley Bernstein, Broad 19d92f402fcd2bf52242a59b5c292bbe SRA:SRR5339121 https://www.encodeproject.org/files/ENCFF876LYB/@@download/ENCFF876LYB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/18/d89cec0c-a0f2-4f29-8a06-e477d23209f8/ENCFF876LYB.fastq.gz missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF005CCH fastq fastq reads ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 76 paired-ended 2 /files/ENCFF876LYB/ 3142568058 Bradley Bernstein, Broad 40e15fcc27e4bcdec512b585e1136dac SRA:SRR5339121 https://www.encodeproject.org/files/ENCFF005CCH/@@download/ENCFF005CCH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/18/365e6733-4c88-45ad-ae80-da67d6dd8d89/ENCFF005CCH.fastq.gz missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF839VJL bam bam alignments hg19 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF533UCC/ 1769710331 ENCODE Processing Pipeline 3b6d3f00d28a5c630cd25d4e83c5c9d2 https://www.encodeproject.org/files/ENCFF839VJL/@@download/ENCFF839VJL.bam released s3://encode-public/2016/01/07/6528aaf6-c8ae-4eb5-8565-3c86806b3cd8/ENCFF839VJL.bam ENCODE3 hg19 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF181QVQ bam bam unfiltered alignments GRCh38 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF533UCC/ 2703192344 ENCODE Processing Pipeline c37794a2feddc74fcf40cb354754b8b3 https://www.encodeproject.org/files/ENCFF181QVQ/@@download/ENCFF181QVQ.bam released s3://encode-public/2016/08/09/9b3de10a-5ee9-4354-be58-82d01194e055/ENCFF181QVQ.bam ENCODE3 GRCh38 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF910JMV bam bam alignments GRCh38 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF533UCC/ 1769540703 ENCODE Processing Pipeline 8f314f697002fb6ebaf6ee304916dd88 https://www.encodeproject.org/files/ENCFF910JMV/@@download/ENCFF910JMV.bam released s3://encode-public/2016/08/09/b372f59d-be92-425b-a046-302c44478816/ENCFF910JMV.bam ENCODE3 GRCh38 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF229SZZ fastq fastq reads ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 76 single-ended 616536591 Bradley Bernstein, Broad 0e43017b4ed98587d525800ae7a7fb01 SRA:SRR5339122 https://www.encodeproject.org/files/ENCFF229SZZ/@@download/ENCFF229SZZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/65774f17-e1db-40ec-b583-003317c17d82/ENCFF229SZZ.fastq.gz missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF359BBF fastq fastq reads ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 76 single-ended 588923319 Bradley Bernstein, Broad 1d1ad589cbf153027a032f5bd3200bb2 SRA:SRR5339123 https://www.encodeproject.org/files/ENCFF359BBF/@@download/ENCFF359BBF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/9540728c-7eda-410e-94d7-b74184556d55/ENCFF359BBF.fastq.gz missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF085ZNH bam bam unfiltered alignments hg19 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF876LYB/, /files/ENCFF359BBF/, /files/ENCFF229SZZ/ 3049768091 ENCODE Processing Pipeline 27524cd4b56422d33dda62d77c9a25a5 https://www.encodeproject.org/files/ENCFF085ZNH/@@download/ENCFF085ZNH.bam released s3://encode-public/2016/11/15/e6d5a86f-cf38-4480-981c-308541b9c4f6/ENCFF085ZNH.bam ENCODE3 hg19 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF694KXV bam bam alignments hg19 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF876LYB/, /files/ENCFF359BBF/, /files/ENCFF229SZZ/ 2078908122 ENCODE Processing Pipeline fe2a775a3b6f2dc12f9ec53462cf2faf https://www.encodeproject.org/files/ENCFF694KXV/@@download/ENCFF694KXV.bam released s3://encode-public/2016/11/15/e111fa3b-0601-46fb-b7bb-9fa8254aaf0b/ENCFF694KXV.bam ENCODE3 hg19 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF902CRQ bam bam unfiltered alignments GRCh38 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF876LYB/, /files/ENCFF359BBF/, /files/ENCFF229SZZ/ 3066523520 ENCODE Processing Pipeline 80fee7a30bb0f3869b517be5c3aa4b7f https://www.encodeproject.org/files/ENCFF902CRQ/@@download/ENCFF902CRQ.bam released s3://encode-public/2017/01/09/bbc3900b-606a-4da8-b0c4-04340a0c687d/ENCFF902CRQ.bam ENCODE3 GRCh38 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF478PPT bam bam alignments GRCh38 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF876LYB/, /files/ENCFF359BBF/, /files/ENCFF229SZZ/ 2078311754 ENCODE Processing Pipeline 0d13c09031dec2c6374ad39b00c672b8 https://www.encodeproject.org/files/ENCFF478PPT/@@download/ENCFF478PPT.bam released s3://encode-public/2017/01/09/ee5ce848-8639-40c7-9ece-79a988b82595/ENCFF478PPT.bam ENCODE3 GRCh38 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF199REB bam bam unfiltered alignments hg19 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF533UCC/ 2688965730 ENCODE Processing Pipeline 682d25365705c88798bdebe3c8ee96cb https://www.encodeproject.org/files/ENCFF199REB/@@download/ENCFF199REB.bam released s3://encode-public/2017/01/10/ca038c71-7c94-420b-a9c5-e1f0eb96825b/ENCFF199REB.bam ENCODE3 hg19 archived missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF105FDZ bam bam unfiltered alignments GRCh38 ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': 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ENCSR625CEM Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF229SZZ/, /files/ENCFF876LYB/, /files/ENCFF359BBF/, /files/ENCFF110MCL/ 2268777104 ENCODE Processing Pipeline 29022a30a348982a5471f7475ac5b0ea https://www.encodeproject.org/files/ENCFF634HPR/@@download/ENCFF634HPR.bam released s3://encode-public/2020/09/17/a062bd47-a6db-44b6-9790-abf2047854ed/ENCFF634HPR.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, mixed run types, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF397XIU fastq fastq reads ENCSR481QDJ Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 648434468 Bradley Bernstein, Broad 46291b5dbcdde6b1714a5c67f00f823a SRA:SRR16814725 https://www.encodeproject.org/files/ENCFF397XIU/@@download/ENCFF397XIU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/a60c1249-efdd-4b8c-a1fc-06ca90c1b25f/ENCFF397XIU.fastq.gz mild to moderate bottlenecking ENCFF500JYN fastq fastq reads ENCSR481QDJ Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 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ENCODE 200-600 1 1_2 76 single-ended 650275210 Bradley Bernstein, Broad e1f6148a0639f82594bad528f1b0d4c9 SRA:SRR16814726 https://www.encodeproject.org/files/ENCFF288VDY/@@download/ENCFF288VDY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e213bd0d-abd5-493e-8168-39ede7f60a7a/ENCFF288VDY.fastq.gz mild to moderate bottlenecking ENCFF036EVA fastq fastq reads ENCSR481QDJ Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 663013820 Bradley Bernstein, Broad c0bfc4cf1f22b03c466a7a03a39fe02e SRA:SRR16814727 https://www.encodeproject.org/files/ENCFF036EVA/@@download/ENCFF036EVA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/135fa986-6d24-4de8-a800-a29fcbf26dca/ENCFF036EVA.fastq.gz mild to moderate bottlenecking ENCFF946SKD fastq fastq reads ENCSR481QDJ Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 638197639 Bradley Bernstein, Broad eae92615eaf95ce3e1b2116b62f7212c SRA:SRR16814728 https://www.encodeproject.org/files/ENCFF946SKD/@@download/ENCFF946SKD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f2e73594-efc9-4af2-b384-dcd08ffdd4e3/ENCFF946SKD.fastq.gz mild to moderate bottlenecking ENCFF097AIY bam bam unfiltered alignments GRCh38 ENCSR481QDJ Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF861AYX/, /files/ENCFF946SKD/, /files/ENCFF036EVA/, /files/ENCFF110MCL/, /files/ENCFF803VXC/, /files/ENCFF397XIU/, /files/ENCFF500JYN/, /files/ENCFF288VDY/, /files/ENCFF507CKA/ 10663151814 ENCODE Processing Pipeline 17f742c2fc09bc6ba37d4cde2b3657d4 https://www.encodeproject.org/files/ENCFF097AIY/@@download/ENCFF097AIY.bam released s3://encode-public/2021/09/14/aeae02d4-2b98-48fc-b3bf-8f3298a49f00/ENCFF097AIY.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking ENCFF532IDC bam bam alignments GRCh38 ENCSR481QDJ Control ChIP-seq /human-donors/ENCDO967KID/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF861AYX/, /files/ENCFF946SKD/, /files/ENCFF036EVA/, /files/ENCFF110MCL/, /files/ENCFF803VXC/, /files/ENCFF397XIU/, /files/ENCFF500JYN/, /files/ENCFF288VDY/, /files/ENCFF507CKA/ 8233584972 ENCODE Processing Pipeline 98c53d53012d8c2dbb56ec4815413f85 https://www.encodeproject.org/files/ENCFF532IDC/@@download/ENCFF532IDC.bam released s3://encode-public/2021/09/14/40889208-0933-4f2c-b008-8a5bb2b299b0/ENCFF532IDC.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking ENCFF483OAR fastq fastq reads ENCSR734SWX Control ChIP-seq /worm-donors/ENCDO660UNK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 226655922 Kevin White, UChicago 4b10fdfc300abd4cbdbec261d50e34af https://www.encodeproject.org/files/ENCFF483OAR/@@download/ENCFF483OAR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF229ZQW/ released s3://encode-public/2015/07/30/49e0ffbb-193c-4f69-91d4-b677509d1093/ENCFF483OAR.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF497ZLM bam bam alignments ce10 ENCSR734SWX Control ChIP-seq /worm-donors/ENCDO660UNK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF483OAR/ 344049741 Kevin White, UChicago 9366bd257471f78daac84653180c2e97 https://www.encodeproject.org/files/ENCFF497ZLM/@@download/ENCFF497ZLM.bam released s3://encode-public/2015/08/19/111e9dfe-59f3-4fde-ae0e-44945252bab1/ENCFF497ZLM.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF691WDM bigWig bigWig read-depth normalized signal ce10 ENCSR734SWX Control ChIP-seq /worm-donors/ENCDO660UNK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF497ZLM/ 9987976 Kevin White, UChicago c06ee3e4532ccf985000359639546485 https://www.encodeproject.org/files/ENCFF691WDM/@@download/ENCFF691WDM.bigWig released s3://encode-public/2015/10/02/a2e0612d-02ba-4839-9c8c-b20f057a2fb2/ENCFF691WDM.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF463VFA bigWig bigWig signal of unique reads ce10 ENCSR734SWX Control ChIP-seq /worm-donors/ENCDO660UNK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': 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missing genetic modification reagents ENCFF923YYX bam bam alignments ce11 ENCSR734SWX Control ChIP-seq /worm-donors/ENCDO660UNK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF483OAR/ 344527534 Kevin White, UChicago 2083c15c3845f93bd2db1b4d9313d5f4 https://www.encodeproject.org/files/ENCFF923YYX/@@download/ENCFF923YYX.bam released s3://encode-public/2016/01/16/c7efe726-ce87-4f8a-8d83-70ee75e24469/ENCFF923YYX.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF914BOO bigWig bigWig signal of unique reads ce11 ENCSR734SWX Control ChIP-seq /worm-donors/ENCDO660UNK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF923YYX/ 10041884 Kevin White, UChicago af36523a230df256e4cdf83513813c49 https://www.encodeproject.org/files/ENCFF914BOO/@@download/ENCFF914BOO.bigWig released s3://encode-public/2016/02/03/3afca9ea-563e-4919-b7e3-b89dcdfc74fe/ENCFF914BOO.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF588KQI bigWig bigWig read-depth normalized signal ce11 ENCSR734SWX Control ChIP-seq /worm-donors/ENCDO660UNK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF923YYX/ 9985524 Kevin White, UChicago 0cd1b53d14b0bedf0cf8b3a5c783a6b7 https://www.encodeproject.org/files/ENCFF588KQI/@@download/ENCFF588KQI.bigWig released s3://encode-public/2016/02/03/9d766e7a-452b-4fb8-8950-bb7497079f3f/ENCFF588KQI.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF304HKO fastq fastq reads ENCSR490VNA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 single-ended 1847805944 Richard Myers, HAIB 819a5f25440cd6129762ee2443f7177a https://www.encodeproject.org/files/ENCFF304HKO/@@download/ENCFF304HKO.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/22/44fb635a-d665-4ff9-99ee-80f0d8cb8d0f/ENCFF304HKO.fastq.gz mild to moderate bottlenecking, low read depth ENCFF887HJO bam bam unfiltered alignments GRCh38 ENCSR490VNA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF304HKO/ 1830202429 ENCODE Processing Pipeline b1f7bbdb6f33331ed40574bb839e512e https://www.encodeproject.org/files/ENCFF887HJO/@@download/ENCFF887HJO.bam released s3://encode-public/2021/12/21/a5cb0f1e-9be3-4fbc-979e-6bacc5556b7d/ENCFF887HJO.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF604PVE bam bam alignments GRCh38 ENCSR490VNA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2022-01-04 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF304HKO/ 1001994836 ENCODE Processing Pipeline e734a367b38581d4dd8bd4e59b1729de https://www.encodeproject.org/files/ENCFF604PVE/@@download/ENCFF604PVE.bam released s3://encode-public/2021/12/21/ab82ea72-792b-409f-8160-d81cb15bd786/ENCFF604PVE.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF000ROB bam bam alignments hg19 ENCSR000DKS Control ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 35 706591245 Vishwanath Iyer, UTA ff90e25c27c49e22117f127b0755f645 https://www.encodeproject.org/files/ENCFF000ROB/@@download/ENCFF000ROB.bam archived s3://encode-public/2012/07/26/76504347-2b7e-4fe9-af70-282459da34fb/ENCFF000ROB.bam Lab custom hg19 archived insufficient read depth ENCFF000ROD bigWig bigWig signal hg19 ENCSR000DKS Control ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 4174023085 Vishwanath Iyer, UTA f651996bd2196690a97762237eb9bfc2 https://www.encodeproject.org/files/ENCFF000ROD/@@download/ENCFF000ROD.bigWig archived s3://encode-public/2012/07/26/7e7dfc29-6eb9-402a-8465-4386e24133e1/ENCFF000ROD.bigWig Lab custom hg19 archived insufficient read depth ENCFF000RPT fastq fastq reads ENCSR000DKS Control ChIP-seq /human-donors/ENCDO000ABJ/ EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 878820068 Vishwanath Iyer, UTA 4f932096f99cc18ee15da45425e03ed9 https://www.encodeproject.org/files/ENCFF000RPT/@@download/ENCFF000RPT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/5a5cdde5-c29c-4cb9-afc7-ff97a316a6e8/ENCFF000RPT.fastq.gz insufficient read depth ENCFF569KIG bam bam unfiltered alignments GRCh38 ENCSR000DKS Control ChIP-seq /human-donors/ENCDO000ABJ/ EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RPT/, /files/ENCFF643CGH/ 1020898278 ENCODE Processing Pipeline 4e9e0c6829a2f632718fbac5f0593a87 https://www.encodeproject.org/files/ENCFF569KIG/@@download/ENCFF569KIG.bam released s3://encode-public/2016/12/03/f8cd9f6b-1311-4097-b477-45fa1f74673a/ENCFF569KIG.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF080BAM bam bam alignments GRCh38 ENCSR000DKS Control ChIP-seq /human-donors/ENCDO000ABJ/ EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RPT/, /files/ENCFF643CGH/ 411848061 ENCODE Processing Pipeline 8ace6457ca42d51ae4ba578c3fc1d38b https://www.encodeproject.org/files/ENCFF080BAM/@@download/ENCFF080BAM.bam released s3://encode-public/2016/12/03/0f67c0bc-0298-47a6-b0b5-3830cfbc85cc/ENCFF080BAM.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF297IQJ bam bam alignments hg19 ENCSR000DKS Control ChIP-seq /human-donors/ENCDO000ABJ/ EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RPT/, /files/ENCFF807MUK/ 409938748 ENCODE Processing Pipeline 2e0b4d67b2f88f1a4a7e59faa6013b32 https://www.encodeproject.org/files/ENCFF297IQJ/@@download/ENCFF297IQJ.bam released s3://encode-public/2016/12/03/a59207f8-dc0e-4fbf-8890-f419eb3f753e/ENCFF297IQJ.bam ENCODE3 hg19 archived insufficient read depth ENCFF989ZZO bam bam unfiltered alignments hg19 ENCSR000DKS Control ChIP-seq /human-donors/ENCDO000ABJ/ EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF000RPT/, /files/ENCFF807MUK/ 1018329223 ENCODE Processing Pipeline 47150b2700b97d04cd5d3ca33fb7a8b3 https://www.encodeproject.org/files/ENCFF989ZZO/@@download/ENCFF989ZZO.bam released s3://encode-public/2016/12/03/bff3c414-391c-463f-a6d2-665d8b94b82f/ENCFF989ZZO.bam ENCODE3 hg19 archived insufficient read depth ENCFF792VOH bam bam alignments GRCh38 ENCSR000DKS Control ChIP-seq /human-donors/ENCDO000ABJ/ EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RPT/ 375833860 ENCODE Processing Pipeline 3cef5c556f43aeb8fe48bc22e05a788f https://www.encodeproject.org/files/ENCFF792VOH/@@download/ENCFF792VOH.bam released s3://encode-public/2020/09/03/d11a2ecf-e574-483f-b350-f05c854466df/ENCFF792VOH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF968ZHG bam bam unfiltered alignments GRCh38 ENCSR000DKS Control ChIP-seq /human-donors/ENCDO000ABJ/ EFO:0005335 GM10266 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RPT/ 1048251003 ENCODE Processing Pipeline fe60d6c184575c51471742552e0a262b https://www.encodeproject.org/files/ENCFF968ZHG/@@download/ENCFF968ZHG.bam released s3://encode-public/2020/09/03/ab4540e8-3c36-4ff5-b65b-72615d7c6a4f/ENCFF968ZHG.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF001GXT bam bam alignments hg19 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GXZ/ 1143875093 John Stamatoyannopoulos, UW 8cb8f57d14406129326eb24bcf48c0e0 https://www.encodeproject.org/files/ENCFF001GXT/@@download/ENCFF001GXT.bam archived s3://encode-public/2011/06/25/6af80dfb-0a78-42bf-8abc-6b845b257303/ENCFF001GXT.bam Lab custom hg19 archived low read length ENCFF001GXU bigWig bigWig raw signal hg19 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001GXT/ 214594946 John Stamatoyannopoulos, UW 085828b0872c6007376e7db2465db614 https://www.encodeproject.org/files/ENCFF001GXU/@@download/ENCFF001GXU.bigWig archived s3://encode-public/2011/06/25/e9bd3a2d-c5b4-4904-88ce-6604dd0dc542/ENCFF001GXU.bigWig Lab custom hg19 archived low read length ENCFF001GXZ fastq fastq reads ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1198274213 John Stamatoyannopoulos, UW e581a5ad20a0e3934f2e50eb4d95438b https://www.encodeproject.org/files/ENCFF001GXZ/@@download/ENCFF001GXZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/f6822d8c-9647-4291-b674-c1e6f9cf2324/ENCFF001GXZ.fastq.gz low read length ENCFF942JSC bam bam unfiltered alignments GRCh38 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GXZ/, /files/ENCFF643CGH/ 1424333962 ENCODE Processing Pipeline 1174b4a02c3faf1859d1fd4d2ab210e4 https://www.encodeproject.org/files/ENCFF942JSC/@@download/ENCFF942JSC.bam released s3://encode-public/2016/08/09/2c0cc4ac-c095-46a9-8054-1319f3bd555a/ENCFF942JSC.bam ENCODE3 GRCh38 archived low read length ENCFF073RIN bam bam alignments GRCh38 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GXZ/, /files/ENCFF643CGH/ 1049079792 ENCODE Processing Pipeline f5a56d2e35bc8a0752b059d366b90c1e https://www.encodeproject.org/files/ENCFF073RIN/@@download/ENCFF073RIN.bam released s3://encode-public/2016/08/09/a09c1c7e-ea50-4c2b-80ac-0649d85a4c13/ENCFF073RIN.bam ENCODE3 GRCh38 archived low read length ENCFF817DKG bam bam unfiltered alignments hg19 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GXZ/, /files/ENCFF807MUK/ 1416287112 ENCODE Processing Pipeline 208a3263e05e8af513211dd1cb2f9f44 https://www.encodeproject.org/files/ENCFF817DKG/@@download/ENCFF817DKG.bam released s3://encode-public/2016/11/13/c74cc560-23b2-472a-ad0b-5d51738c41e6/ENCFF817DKG.bam ENCODE3 hg19 archived low read length ENCFF696BBG bam bam alignments hg19 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001GXZ/, /files/ENCFF807MUK/ 1049320509 ENCODE Processing Pipeline 4ca9ed19a37a73082d999746ee10093f https://www.encodeproject.org/files/ENCFF696BBG/@@download/ENCFF696BBG.bam released s3://encode-public/2016/11/13/dbdfc768-2df7-40cc-9661-ecb99a929469/ENCFF696BBG.bam ENCODE3 hg19 archived low read length ENCFF641KVL bam bam unfiltered alignments GRCh38 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GXZ/ 1408195763 ENCODE Processing Pipeline 6dcfa58d5efc0db3e34788851ccb6484 https://www.encodeproject.org/files/ENCFF641KVL/@@download/ENCFF641KVL.bam released s3://encode-public/2020/09/03/4979d8d1-c084-428b-90b7-026e5f45f3c9/ENCFF641KVL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF774ADJ bam bam alignments GRCh38 ENCSR000DPT Control ChIP-seq /human-donors/ENCDO373ZSZ/ CLO:0021754 AG09319 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001GXZ/ 1127165729 ENCODE Processing Pipeline a4ee4ed469517370ebbd347812d59075 https://www.encodeproject.org/files/ENCFF774ADJ/@@download/ENCFF774ADJ.bam released s3://encode-public/2020/09/03/e516d2f9-1bfa-4dc4-be23-191b431018b1/ENCFF774ADJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000AHC bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF000AHM/ 1506205577 Bradley Bernstein, Broad 881d53c316c494100d4878c0ec05e929 https://www.encodeproject.org/files/ENCFF000AHC/@@download/ENCFF000AHC.bam archived s3://encode-public/2010/11/16/0a81afea-1a14-444a-91fb-61ac8a98d990/ENCFF000AHC.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000AHD bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/ 5555948382 Bradley Bernstein, Broad 2f8d79424c236c7772f7603760e593bf https://www.encodeproject.org/files/ENCFF000AHD/@@download/ENCFF000AHD.bam archived s3://encode-public/2010/11/16/6c4e549c-0aec-4e15-a15f-b723072659fc/ENCFF000AHD.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000AHF bigWig bigWig signal hg19 ENCSR000ASS Control ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 644963127 Bradley Bernstein, Broad 5b42cbfad6c7d0f9d0d7561dc0f0fc7c https://www.encodeproject.org/files/ENCFF000AHF/@@download/ENCFF000AHF.bigWig archived s3://encode-public/2010/11/16/bf95b724-905d-4ed4-a6ed-b2c38bca2b79/ENCFF000AHF.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000AHM fastq fastq reads ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 single-ended 1463300751 Bradley Bernstein, Broad 442fd4165ad1a102ef3f2311ef595f00 https://www.encodeproject.org/files/ENCFF000AHM/@@download/ENCFF000AHM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2010/11/16/a6e6d6a8-22e5-4584-9790-e147da2cefbe/ENCFF000AHM.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000AHV fastq fastq reads ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 single-ended 5342631137 Bradley Bernstein, Broad fcb4b21a280e66d2e652bc67f533f569 https://www.encodeproject.org/files/ENCFF000AHV/@@download/ENCFF000AHV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2010/11/16/1f5af66d-f836-41e0-b1e1-e2b1818b02d5/ENCFF000AHV.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF861CKE bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHV/ 6618292723 ENCODE Processing Pipeline db74cd56783d30ad61e288a8136505bf https://www.encodeproject.org/files/ENCFF861CKE/@@download/ENCFF861CKE.bam released s3://encode-public/2020/09/15/fca3b801-4e83-4a65-8e79-14c335c7cf16/ENCFF861CKE.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF420SBL bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHV/ 4874475603 ENCODE Processing Pipeline 9aef064cd285f53acff9ace05a9d5744 https://www.encodeproject.org/files/ENCFF420SBL/@@download/ENCFF420SBL.bam released s3://encode-public/2020/09/15/abf40246-0776-47da-a684-462e7fa61acd/ENCFF420SBL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF185RZC bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHM/ 1263255630 ENCODE Processing Pipeline 13d47448b5ed0c694fcec44bb6ec0a8e https://www.encodeproject.org/files/ENCFF185RZC/@@download/ENCFF185RZC.bam released s3://encode-public/2020/09/15/c768915e-1b37-48ee-8ef3-d9c41726ecbe/ENCFF185RZC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF948UNV bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHM/ 1879355989 ENCODE Processing Pipeline c03fd37642f915b76e4c29f408c2823e https://www.encodeproject.org/files/ENCFF948UNV/@@download/ENCFF948UNV.bam released s3://encode-public/2016/08/09/41a17a15-4d6c-4ed4-b576-0a5d68df4c78/ENCFF948UNV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF482SGU bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHM/ 1166589247 ENCODE Processing Pipeline 0e8996d643789278c3d229016d5e685b https://www.encodeproject.org/files/ENCFF482SGU/@@download/ENCFF482SGU.bam released s3://encode-public/2016/08/09/90c7bc65-53c5-4608-923e-eb5b0757aa28/ENCFF482SGU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF043PUQ bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF643CGH/ 6814445019 ENCODE Processing Pipeline e5c095a015297543efba33d319870037 https://www.encodeproject.org/files/ENCFF043PUQ/@@download/ENCFF043PUQ.bam released s3://encode-public/2016/08/09/4d314985-7df6-41b0-ba09-cfccb9dd152a/ENCFF043PUQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF114ODP bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF643CGH/ 4524699077 ENCODE Processing Pipeline 66bacf6dc31c14b4c7fed558f50a1ba7 https://www.encodeproject.org/files/ENCFF114ODP/@@download/ENCFF114ODP.bam released s3://encode-public/2016/08/09/ff66573d-326c-42d6-bf3d-22149fd50eb9/ENCFF114ODP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF408NTN bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHM/ 1166699942 ENCODE Processing Pipeline 8a0b1e3821e62f7656136020550106e1 https://www.encodeproject.org/files/ENCFF408NTN/@@download/ENCFF408NTN.bam released s3://encode-public/2016/11/15/d278c9db-4ffc-41a3-bec4-aa93661cd1d0/ENCFF408NTN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF987CPC bam bam unfiltered alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHM/ 1868557656 ENCODE Processing Pipeline fb1615f71983f240ab35291ba9430ed4 https://www.encodeproject.org/files/ENCFF987CPC/@@download/ENCFF987CPC.bam released s3://encode-public/2016/11/15/824a4e53-59e6-43b3-ab49-db9550afc87d/ENCFF987CPC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF957AOI bam bam unfiltered alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF807MUK/ 6765279848 ENCODE Processing Pipeline 61435c04f094c9d10361664c7f9a4af9 https://www.encodeproject.org/files/ENCFF957AOI/@@download/ENCFF957AOI.bam released s3://encode-public/2016/11/15/73437225-da60-48af-b079-a6b785200e80/ENCFF957AOI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF502CGT bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF807MUK/ 4523863983 ENCODE Processing Pipeline d0f3bc4dddc96648f00388ec618dd434 https://www.encodeproject.org/files/ENCFF502CGT/@@download/ENCFF502CGT.bam released s3://encode-public/2016/11/15/0504b8e7-1794-4b41-a947-5e58706b0212/ENCFF502CGT.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF271TLF tagAlign tagAlign alignments hg19 ENCSR000ASS Control ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 204066477 Anshul Kundaje, Stanford 4a4470f73dc38605d65ee0e5570e1103 https://www.encodeproject.org/files/ENCFF271TLF/@@download/ENCFF271TLF.tagAlign.gz archived s3://encode-public/2016/07/19/49804389-8492-4303-aa44-a81093467207/ENCFF271TLF.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF122PEM fastq fastq reads ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 single-ended 651489780 Bradley Bernstein, Broad aadab5d8c269deba42ad2e11228ca33f https://www.encodeproject.org/files/ENCFF122PEM/@@download/ENCFF122PEM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/52c23de9-1b25-44cf-968a-db5db44a0210/ENCFF122PEM.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF719NBM fastq fastq reads ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 single-ended 792894642 Bradley Bernstein, Broad 7e7c6ab7c5edd851b850e05a589fdcaa https://www.encodeproject.org/files/ENCFF719NBM/@@download/ENCFF719NBM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/363256f1-14a4-49c5-84f7-9baf3d5fe469/ENCFF719NBM.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF550UKJ fastq fastq reads ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 single-ended 782196188 Bradley Bernstein, Broad 495ea87a213faff5e0e63667c940f6e6 https://www.encodeproject.org/files/ENCFF550UKJ/@@download/ENCFF550UKJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/202fefcc-053c-4478-9e5d-32d118c810f9/ENCFF550UKJ.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF824LNT fastq fastq reads ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 single-ended 660795429 Bradley Bernstein, Broad ab62cd9590f2825dc8c444ba61e08eb7 https://www.encodeproject.org/files/ENCFF824LNT/@@download/ENCFF824LNT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/508591d4-9d3b-4431-84ef-cc32713d3d84/ENCFF824LNT.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF473CGT bam bam unfiltered alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 /files/ENCFF807MUK/, /files/ENCFF824LNT/, /files/ENCFF122PEM/ 1640089736 ENCODE Processing Pipeline d615834e3a670b608a11769c7b46c9d7 https://www.encodeproject.org/files/ENCFF473CGT/@@download/ENCFF473CGT.bam released s3://encode-public/2020/02/06/5833a486-dd39-4ca1-a5f3-ad9db6c78b48/ENCFF473CGT.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF003XWF bam bam unfiltered alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHM/ 1868557660 ENCODE Processing Pipeline 31ca946105e01e48dcccb89e77379606 https://www.encodeproject.org/files/ENCFF003XWF/@@download/ENCFF003XWF.bam released s3://encode-public/2020/02/06/8941a47b-ec21-45a2-91fa-e8c6d0d39f79/ENCFF003XWF.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF229IQV bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 /files/ENCFF807MUK/, /files/ENCFF824LNT/, /files/ENCFF122PEM/ 856894405 ENCODE Processing Pipeline 185ebb5df5d95e5848aa872cf4f87d8c https://www.encodeproject.org/files/ENCFF229IQV/@@download/ENCFF229IQV.bam released s3://encode-public/2020/02/06/10f10060-d44d-4de9-aed8-eea8a2947998/ENCFF229IQV.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF316DLI bam bam unfiltered alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF719NBM/, /files/ENCFF807MUK/, /files/ENCFF550UKJ/ 1966825154 ENCODE Processing Pipeline ff56d828d2709ed54e0e8291588975ce https://www.encodeproject.org/files/ENCFF316DLI/@@download/ENCFF316DLI.bam released s3://encode-public/2020/02/06/b33d5204-211b-44be-8af4-85fda9df2838/ENCFF316DLI.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF187NSK bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF719NBM/, /files/ENCFF807MUK/, /files/ENCFF550UKJ/ 1114493552 ENCODE Processing Pipeline 5301ec3c4cfd7d1a78d3c3ef3ce15478 https://www.encodeproject.org/files/ENCFF187NSK/@@download/ENCFF187NSK.bam released s3://encode-public/2020/02/06/e41aed59-1767-4d23-8a52-ead31159de0a/ENCFF187NSK.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF300EEP bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AHM/ 1166699947 ENCODE Processing Pipeline 8e9ba2d20ad17f479f453f9618f01434 https://www.encodeproject.org/files/ENCFF300EEP/@@download/ENCFF300EEP.bam released s3://encode-public/2020/02/06/50969439-8964-4084-893a-979b46472365/ENCFF300EEP.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF091TUJ bam bam unfiltered alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF807MUK/ 6765279852 ENCODE Processing Pipeline b3c947a691799c2acd87024b56476ff3 https://www.encodeproject.org/files/ENCFF091TUJ/@@download/ENCFF091TUJ.bam released s3://encode-public/2020/02/06/8c06b7b9-6c40-468e-8b9c-654154bd3971/ENCFF091TUJ.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF728MDD bam bam alignments hg19 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF807MUK/ 4523863988 ENCODE Processing Pipeline 7a48b0d173232e7781b0f42858c711ab https://www.encodeproject.org/files/ENCFF728MDD/@@download/ENCFF728MDD.bam released s3://encode-public/2020/02/06/edb98d16-4f16-40f6-9afa-e4b769e18d4a/ENCFF728MDD.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF967DHR bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHM/ 1879355992 ENCODE Processing Pipeline 61e568c6791c52498ef91be2f5de18de https://www.encodeproject.org/files/ENCFF967DHR/@@download/ENCFF967DHR.bam released s3://encode-public/2020/02/18/dcb28d07-c4e2-42e8-abf8-eafd20b0251c/ENCFF967DHR.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF373KCL bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 /files/ENCFF643CGH/, /files/ENCFF824LNT/, /files/ENCFF122PEM/ 856734885 ENCODE Processing Pipeline 0e04331d3642fc5926625bbbed2cf1d1 https://www.encodeproject.org/files/ENCFF373KCL/@@download/ENCFF373KCL.bam released s3://encode-public/2020/02/18/124f4d7f-038b-41d3-9748-de74120ca8f2/ENCFF373KCL.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF104RED bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF719NBM/, /files/ENCFF643CGH/, /files/ENCFF550UKJ/ 1114278289 ENCODE Processing Pipeline 02576932ebf1ee32a0462f15ea20e46d https://www.encodeproject.org/files/ENCFF104RED/@@download/ENCFF104RED.bam released s3://encode-public/2020/02/18/06bdb051-a4b1-4152-9085-6539f9d2d9e7/ENCFF104RED.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF898KOC bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF643CGH/ 4524699080 ENCODE Processing Pipeline 5e7006e5092a0c809310e5d38eaf3546 https://www.encodeproject.org/files/ENCFF898KOC/@@download/ENCFF898KOC.bam released s3://encode-public/2020/02/18/9310b79b-a500-4b19-9c7a-3d26fece638e/ENCFF898KOC.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF546UNR bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF719NBM/, /files/ENCFF643CGH/, /files/ENCFF550UKJ/ 1976520743 ENCODE Processing Pipeline 14678f07671a238369cd12aeaa14ad5e https://www.encodeproject.org/files/ENCFF546UNR/@@download/ENCFF546UNR.bam released s3://encode-public/2020/02/18/f5b27262-babe-4994-8741-8e2ac8d5bc3c/ENCFF546UNR.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF408GMJ bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 /files/ENCFF643CGH/, /files/ENCFF824LNT/, /files/ENCFF122PEM/ 1647949764 ENCODE Processing Pipeline 19c6a1e4fe6b9f7cf6f1b02c5e70ec08 https://www.encodeproject.org/files/ENCFF408GMJ/@@download/ENCFF408GMJ.bam released s3://encode-public/2020/02/18/8f4bf10d-fb15-4a5f-b82a-4bc6fa045458/ENCFF408GMJ.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF745CZQ bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AHM/ 1166589250 ENCODE Processing Pipeline ac41b2b65991bb464edf4facdc7eb213 https://www.encodeproject.org/files/ENCFF745CZQ/@@download/ENCFF745CZQ.bam released s3://encode-public/2020/02/18/490a6a7f-db61-4978-aaca-c7b343299b5c/ENCFF745CZQ.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF270RTT bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000AHV/, /files/ENCFF643CGH/ 6814445023 ENCODE Processing Pipeline 4bf7c3ec9e9e6449d245740f16113c13 https://www.encodeproject.org/files/ENCFF270RTT/@@download/ENCFF270RTT.bam released s3://encode-public/2020/02/18/9e14d7b1-dd7e-45c9-a01f-f910b1a81327/ENCFF270RTT.bam mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF597SEJ bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000AHM/ 1828052227 ENCODE Processing Pipeline 106ebb2031acc0ac1c51a928cbd1fa37 https://www.encodeproject.org/files/ENCFF597SEJ/@@download/ENCFF597SEJ.bam released s3://encode-public/2020/09/15/6fad46f5-e4ae-446d-a1b4-8790d2ba871e/ENCFF597SEJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF052NXN bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF719NBM/, /files/ENCFF550UKJ/ 1208360354 ENCODE Processing Pipeline dde5f09b36d52f43e0c4f6611727123e https://www.encodeproject.org/files/ENCFF052NXN/@@download/ENCFF052NXN.bam released s3://encode-public/2020/09/15/6ee0c5b9-614b-4118-923d-59855fc03f12/ENCFF052NXN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF615YWF bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 /files/ENCFF824LNT/, /files/ENCFF110MCL/, /files/ENCFF122PEM/ 1607451517 ENCODE Processing Pipeline d87915b4676ed9be5beea2a01c674da4 https://www.encodeproject.org/files/ENCFF615YWF/@@download/ENCFF615YWF.bam released s3://encode-public/2020/09/15/18cff257-15eb-4eae-8e56-6402cfad99c9/ENCFF615YWF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF110QOJ bam bam unfiltered alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF719NBM/, /files/ENCFF550UKJ/ 1926365285 ENCODE Processing Pipeline 5d061fd58fed8548e5702ffad77b24b7 https://www.encodeproject.org/files/ENCFF110QOJ/@@download/ENCFF110QOJ.bam released s3://encode-public/2020/09/15/542b4e1b-b6be-4037-9ee6-658119083e06/ENCFF110QOJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF978DFD bam bam alignments GRCh38 ENCSR000ASS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-08-06 ENCODE see document 200-600 4 4_1 36 /files/ENCFF824LNT/, /files/ENCFF110MCL/, /files/ENCFF122PEM/ 930735435 ENCODE Processing Pipeline 972a22023c4aaac07503e5c623f65ec9 https://www.encodeproject.org/files/ENCFF978DFD/@@download/ENCFF978DFD.bam released s3://encode-public/2020/09/15/124686dd-016b-4204-ab1d-ae1cf6133fb8/ENCFF978DFD.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000WMI bam bam alignments hg19 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF000WMS/ 216510555 Michael Snyder, Stanford 85168d0d6ad02a7363fb3cbb9fb5e74b https://www.encodeproject.org/files/ENCFF000WMI/@@download/ENCFF000WMI.bam archived s3://encode-public/2012/07/01/28c62ec1-e41d-4014-b5d9-4dc2aae95b66/ENCFF000WMI.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WMJ bam bam alignments hg19 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF000WMR/ 175296642 Michael Snyder, Stanford b887868ac0ddaf277aaf8f19b2400a7b https://www.encodeproject.org/files/ENCFF000WMJ/@@download/ENCFF000WMJ.bam archived s3://encode-public/2012/07/01/1c97e937-20f8-4602-91a3-a6db81c7e1b0/ENCFF000WMJ.bam Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WMK bigWig bigWig signal hg19 ENCSR000EAX Control ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 278847525 Michael Snyder, Stanford 4eb2393a5ada39b26f2707845291067a https://www.encodeproject.org/files/ENCFF000WMK/@@download/ENCFF000WMK.bigWig archived s3://encode-public/2012/07/01/2dbe0a55-2668-4e56-9c16-996aacace54f/ENCFF000WMK.bigWig Lab custom hg19 archived insufficient read length extremely low read depth ENCFF000WMR fastq fastq reads ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 single-ended 140296356 Michael Snyder, Stanford a2bd14603bdc9a540f7dbdd76656c08e https://www.encodeproject.org/files/ENCFF000WMR/@@download/ENCFF000WMR.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/721e67ba-3258-4058-8007-d8f24528ea92/ENCFF000WMR.fastq.gz insufficient read length extremely low read depth ENCFF000WMS fastq fastq reads ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 single-ended 167986155 Michael Snyder, Stanford 38174eb36389d5c2808b0fa38813233c https://www.encodeproject.org/files/ENCFF000WMS/@@download/ENCFF000WMS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/ec1edb73-caf5-422a-8397-1127ba0fd200/ENCFF000WMS.fastq.gz insufficient read length extremely low read depth ENCFF336EQJ bam bam unfiltered alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMS/ 217595141 ENCODE Processing Pipeline 781c547e795e612b4cedd6f2326a7f90 https://www.encodeproject.org/files/ENCFF336EQJ/@@download/ENCFF336EQJ.bam released s3://encode-public/2016/10/26/c26238a5-4d49-45e6-b712-6ba6deb00f1d/ENCFF336EQJ.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF504LPO bam bam unfiltered alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMR/ 175959842 ENCODE Processing Pipeline 243d160f264b64d0f88a6e71de3c92d3 https://www.encodeproject.org/files/ENCFF504LPO/@@download/ENCFF504LPO.bam released s3://encode-public/2016/10/26/c6d5fc4c-0859-4f0b-96ab-0f0379b21e08/ENCFF504LPO.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF436ULT bam bam alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMR/ 102561597 ENCODE Processing Pipeline 6190a6217ef57708bda9fd7247eb9d97 https://www.encodeproject.org/files/ENCFF436ULT/@@download/ENCFF436ULT.bam released s3://encode-public/2016/10/26/c9bfcbf2-fd79-41d6-8e55-d86d3e0770e0/ENCFF436ULT.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF590UNB bam bam alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF643CGH/, /files/ENCFF000WMS/ 136925100 ENCODE Processing Pipeline 429fa880b377d8a8cb7d3421ca4cf8bc https://www.encodeproject.org/files/ENCFF590UNB/@@download/ENCFF590UNB.bam released s3://encode-public/2016/10/26/a5410a81-e5d8-4206-adc6-3c5a090f6f8c/ENCFF590UNB.bam ENCODE3 GRCh38 archived insufficient read length extremely low read depth ENCFF933PTD bam bam alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WMR/ 103248999 ENCODE Processing Pipeline e7a811d164a9cb389d18bdd34698359c https://www.encodeproject.org/files/ENCFF933PTD/@@download/ENCFF933PTD.bam released s3://encode-public/2020/10/27/2b60147f-80b8-456c-b63e-5f2bc7856a04/ENCFF933PTD.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF564ROK bam bam alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WMS/ 139166098 ENCODE Processing Pipeline 8af79c242dbb89fcd355218b02d811dc https://www.encodeproject.org/files/ENCFF564ROK/@@download/ENCFF564ROK.bam released s3://encode-public/2020/10/27/c48d2e4a-7583-4ffb-9451-d0a39095f3ae/ENCFF564ROK.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF856FQI bam bam unfiltered alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 2 2_1 28 /files/ENCFF110MCL/, /files/ENCFF000WMR/ 166993417 ENCODE Processing Pipeline 6f03c558b0715ec5a780ff22e5e00aa4 https://www.encodeproject.org/files/ENCFF856FQI/@@download/ENCFF856FQI.bam released s3://encode-public/2020/10/27/8803f9bb-cb48-4ad9-b4c1-fa63d93ef40a/ENCFF856FQI.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF511SQH bam bam unfiltered alignments GRCh38 ENCSR000EAX Control ChIP-seq /human-donors/ENCDO000ACH/ EFO:0005348 GM18526 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour DNA 2011-10-29 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000WMS/ 205508262 ENCODE Processing Pipeline 31015588109a3c4192ccb553ed8e54cb https://www.encodeproject.org/files/ENCFF511SQH/@@download/ENCFF511SQH.bam released s3://encode-public/2020/10/27/94914571-8aba-4082-9275-709086356e92/ENCFF511SQH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length extremely low read depth ENCFF000AQZ bam bam alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000ARK/ 309676571 Bradley Bernstein, Broad da2d9af67e6ac5f46ec0563c66ef2c6d https://www.encodeproject.org/files/ENCFF000AQZ/@@download/ENCFF000AQZ.bam archived s3://encode-public/2010/11/16/92596e93-1feb-4ba7-acb1-c76a17ec80cb/ENCFF000AQZ.bam Lab custom hg19 archived insufficient read depth ENCFF000ARA bam bam alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000ARO/ 269704987 Bradley Bernstein, Broad cdf5d411bc6815302724609d066f8333 https://www.encodeproject.org/files/ENCFF000ARA/@@download/ENCFF000ARA.bam archived s3://encode-public/2010/11/16/12a070df-824f-49c9-a51e-a35d648a4d4b/ENCFF000ARA.bam Lab custom hg19 archived insufficient read depth ENCFF000ARD bigWig bigWig signal hg19 ENCSR000AKJ Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 358036021 Bradley Bernstein, Broad 1c5fc0fdede07fa5b91b8d67a73dbeac https://www.encodeproject.org/files/ENCFF000ARD/@@download/ENCFF000ARD.bigWig archived s3://encode-public/2010/11/16/40b1041c-263e-481c-981e-d147bcb25b9d/ENCFF000ARD.bigWig Lab custom hg19 archived insufficient read depth ENCFF000ARK fastq fastq reads ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 single-ended 502826550 Bradley Bernstein, Broad c2b1d57d1098e17090b87c8256f3fe6c https://www.encodeproject.org/files/ENCFF000ARK/@@download/ENCFF000ARK.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/55a84578-56e7-4ea7-a60a-7a150e21201c/ENCFF000ARK.fastq.gz insufficient read depth ENCFF000ARO fastq fastq reads ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 single-ended 430346297 Bradley Bernstein, Broad fa502fe5b31dd84d607e04411bab8f75 https://www.encodeproject.org/files/ENCFF000ARO/@@download/ENCFF000ARO.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/a5b1eb2e-4b8d-4c15-93b8-535de64bafbb/ENCFF000ARO.fastq.gz insufficient read depth ENCFF850RIE bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ARK/ 257041985 ENCODE Processing Pipeline 4c5929d34b6d75bc85a867fb478af536 https://www.encodeproject.org/files/ENCFF850RIE/@@download/ENCFF850RIE.bam released s3://encode-public/2020/09/29/cd75ea33-0317-4dc9-b822-a44ddf1c4a34/ENCFF850RIE.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF066RCS bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ARO/ 230901067 ENCODE Processing Pipeline d526b592f7704f05a87c2acff3f36097 https://www.encodeproject.org/files/ENCFF066RCS/@@download/ENCFF066RCS.bam released s3://encode-public/2020/09/29/66ccab69-33ff-4def-bbfc-9065d770c949/ENCFF066RCS.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF231IAK bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 612709131 ENCODE Processing Pipeline ca8f87f07ffdfcaeea0be85d60e45cdb https://www.encodeproject.org/files/ENCFF231IAK/@@download/ENCFF231IAK.bam released s3://encode-public/2016/07/13/408bf4bf-7323-4bc9-90ad-ac06d196cdb7/ENCFF231IAK.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF651UIO bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 320260128 ENCODE Processing Pipeline 4effce3d5e505846deba3998eed76963 https://www.encodeproject.org/files/ENCFF651UIO/@@download/ENCFF651UIO.bam released s3://encode-public/2016/07/13/624dd4ff-015d-448e-bc97-dd036331ee24/ENCFF651UIO.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF858ORL bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 532014436 ENCODE Processing Pipeline f81b6321dcab0816c453dd03e2688f45 https://www.encodeproject.org/files/ENCFF858ORL/@@download/ENCFF858ORL.bam released s3://encode-public/2016/07/13/83aa08d8-4091-4d44-81ad-a732869becdf/ENCFF858ORL.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF684NLR bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 290092543 ENCODE Processing Pipeline bcfe0e347d0bae688191fc3e48cfacb7 https://www.encodeproject.org/files/ENCFF684NLR/@@download/ENCFF684NLR.bam released s3://encode-public/2016/07/13/dec42a65-e7c3-4772-b11f-4ee2b16c7455/ENCFF684NLR.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF303HPA bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 47 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 501603001 ENCODE Processing Pipeline d7f81157e37a7c945c0d49333fe2345d https://www.encodeproject.org/files/ENCFF303HPA/@@download/ENCFF303HPA.bam released s3://encode-public/2016/08/09/5163ecb5-f870-4333-bd66-60ddc5ec2b82/ENCFF303HPA.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF797ARJ bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 230128333 ENCODE Processing Pipeline 756b071c563fd841e7592b8bc3f7fe8f https://www.encodeproject.org/files/ENCFF797ARJ/@@download/ENCFF797ARJ.bam released s3://encode-public/2016/08/09/2d787bf6-f490-4abc-997b-ed46f7dde140/ENCFF797ARJ.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF434HLD bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 47 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 275102004 ENCODE Processing Pipeline 5cc84613511fdba03e0b03f99d9743f6 https://www.encodeproject.org/files/ENCFF434HLD/@@download/ENCFF434HLD.bam released s3://encode-public/2016/08/09/c086e006-8b17-4709-8122-c0efce246f1e/ENCFF434HLD.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF611CHF bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 411191882 ENCODE Processing Pipeline fb2981d1b4f72fd42a3667320d26c2c7 https://www.encodeproject.org/files/ENCFF611CHF/@@download/ENCFF611CHF.bam released s3://encode-public/2016/08/09/5f48eb60-94ce-4033-90f4-17aa9a7a275e/ENCFF611CHF.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF852TVX bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 47 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 576718243 ENCODE Processing Pipeline 94f138a0bad1991ed6919e649f3ada06 https://www.encodeproject.org/files/ENCFF852TVX/@@download/ENCFF852TVX.bam released s3://encode-public/2016/08/09/5903f566-1b3a-4dc7-899c-35d295c96738/ENCFF852TVX.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF873ZWP bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 206294477 ENCODE Processing Pipeline faea42a97db8dd68bf9ce8900d05112b https://www.encodeproject.org/files/ENCFF873ZWP/@@download/ENCFF873ZWP.bam released s3://encode-public/2016/08/09/8a780271-5eb3-409e-8604-b157239160fc/ENCFF873ZWP.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF953EVD bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 466846824 ENCODE Processing Pipeline 42d7844b3fcbb76ac1f2a1e7f60e0b82 https://www.encodeproject.org/files/ENCFF953EVD/@@download/ENCFF953EVD.bam released s3://encode-public/2016/08/09/f17e2983-a922-4b39-ab59-0f95bb61550d/ENCFF953EVD.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF547XEQ bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 47 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 307165993 ENCODE Processing Pipeline 767ca97f2292aba38a5d926e716a7c73 https://www.encodeproject.org/files/ENCFF547XEQ/@@download/ENCFF547XEQ.bam released s3://encode-public/2016/08/09/973fa1cb-620d-4152-92b5-1dad2342c49b/ENCFF547XEQ.bam ENCODE3 GRCh38 archived insufficient read depth ENCFF055OBO tagAlign tagAlign alignments hg19 ENCSR000AKJ Control ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 89204614 Anshul Kundaje, Stanford d612feb8b672342f6cb3b4fb935a332e https://www.encodeproject.org/files/ENCFF055OBO/@@download/ENCFF055OBO.tagAlign.gz archived s3://encode-public/2016/07/19/c20bc759-dbe8-4331-ada0-8735fa0c1cf2/ENCFF055OBO.tagAlign.gz Lab custom hg19 archived insufficient read depth ENCFF691DXH bam bam unfiltered alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000ARK/ 611198159 ENCODE Processing Pipeline 35c4744e9d54d67b00f33d86b873f051 https://www.encodeproject.org/files/ENCFF691DXH/@@download/ENCFF691DXH.bam released s3://encode-public/2017/01/05/30c68e8b-8d0d-409f-9cb2-570891fa2c11/ENCFF691DXH.bam ENCODE3 hg19 archived insufficient read depth ENCFF151JBU bam bam unfiltered alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF807MUK/, /files/ENCFF000ARO/ 530693526 ENCODE Processing Pipeline 278ab8e5339557c1ddff3594a8d54126 https://www.encodeproject.org/files/ENCFF151JBU/@@download/ENCFF151JBU.bam released s3://encode-public/2017/01/05/b1087607-42bd-4ab1-a718-450e18847d00/ENCFF151JBU.bam ENCODE3 hg19 archived insufficient read depth ENCFF213TCX bam bam unfiltered alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ARK/ 465277978 ENCODE Processing Pipeline 6f9162c8e3960c194e76c1194c8775c8 https://www.encodeproject.org/files/ENCFF213TCX/@@download/ENCFF213TCX.bam released s3://encode-public/2017/01/05/a704adcc-5e4e-4972-bf19-5d740ae3d92a/ENCFF213TCX.bam ENCODE3 hg19 archived insufficient read depth ENCFF339YTX bam bam alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000ARK/ 318752464 ENCODE Processing Pipeline b4dd197ef0e3f647e95797e788097550 https://www.encodeproject.org/files/ENCFF339YTX/@@download/ENCFF339YTX.bam released s3://encode-public/2017/01/05/6dd46e25-49f7-4f92-98ca-f31dc60947a8/ENCFF339YTX.bam ENCODE3 hg19 archived insufficient read depth ENCFF663HUX bam bam unfiltered alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ARO/ 409820475 ENCODE Processing Pipeline ade29912f4267d34d5c741ebadf29b5c https://www.encodeproject.org/files/ENCFF663HUX/@@download/ENCFF663HUX.bam released s3://encode-public/2017/01/05/da4a68d9-e924-4408-98f9-87dd6a9ae7c8/ENCFF663HUX.bam ENCODE3 hg19 archived insufficient read depth ENCFF430BAQ bam bam alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF807MUK/, /files/ENCFF000ARO/ 289222845 ENCODE Processing Pipeline 61c5a90130dc4becab89f7c4021ccf1c https://www.encodeproject.org/files/ENCFF430BAQ/@@download/ENCFF430BAQ.bam released s3://encode-public/2017/01/05/c5ec9b68-6a2c-4e1d-8a42-598fe0e17c0d/ENCFF430BAQ.bam ENCODE3 hg19 archived insufficient read depth ENCFF624TPS bam bam alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000ARO/ 205695300 ENCODE Processing Pipeline f46782e64c2af324bf7b7322605d5b7c https://www.encodeproject.org/files/ENCFF624TPS/@@download/ENCFF624TPS.bam released s3://encode-public/2017/01/05/7d3ac776-8b4c-4706-acf3-5b9b4ef33cb7/ENCFF624TPS.bam ENCODE3 hg19 archived insufficient read depth ENCFF232FPZ bam bam alignments hg19 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000ARK/ 229014293 ENCODE Processing Pipeline 8a6dafed5ff19a39e51a0b88bd36fcb9 https://www.encodeproject.org/files/ENCFF232FPZ/@@download/ENCFF232FPZ.bam released s3://encode-public/2017/01/05/bae8ad76-7867-4090-b908-247b4ff95e0d/ENCFF232FPZ.bam ENCODE3 hg19 archived insufficient read depth ENCFF183LKB bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 612709168 ENCODE Processing Pipeline 030c7d02b43c899f80ad36476096ace9 https://www.encodeproject.org/files/ENCFF183LKB/@@download/ENCFF183LKB.bam released s3://encode-public/2020/02/12/303fc029-b979-4514-a771-3aee466b074c/ENCFF183LKB.bam insufficient read depth ENCFF559AEN bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 290092578 ENCODE Processing Pipeline 1ace9cd046ba6eadf6bc455a5975ff43 https://www.encodeproject.org/files/ENCFF559AEN/@@download/ENCFF559AEN.bam released s3://encode-public/2020/02/12/8f0c2404-c6b5-41ec-997e-9348fc695149/ENCFF559AEN.bam insufficient read depth ENCFF044ATK bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARO/ 532014471 ENCODE Processing Pipeline a13c7557d461f50f63402dc8193164b9 https://www.encodeproject.org/files/ENCFF044ATK/@@download/ENCFF044ATK.bam released s3://encode-public/2020/02/12/02a956d1-1ba3-4937-8685-f2c97412dc6c/ENCFF044ATK.bam insufficient read depth ENCFF908JTQ bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000ARK/ 320260163 ENCODE Processing Pipeline 377b5e92df9b18a5a7e5e1388196dc23 https://www.encodeproject.org/files/ENCFF908JTQ/@@download/ENCFF908JTQ.bam released s3://encode-public/2020/02/12/3d791e05-38ca-403d-b15d-004b76cc8b58/ENCFF908JTQ.bam insufficient read depth ENCFF383MXY bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF000ARK/, /files/ENCFF110MCL/ 625857991 ENCODE Processing Pipeline c8a1874189d750b4ead51d8e596a165c https://www.encodeproject.org/files/ENCFF383MXY/@@download/ENCFF383MXY.bam released s3://encode-public/2020/09/03/06af598e-0c8e-493e-938e-b2d75e73c147/ENCFF383MXY.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF321WRZ bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF000ARO/, /files/ENCFF110MCL/ 541986340 ENCODE Processing Pipeline d1fe84f6555d97d878c525a55ec9cc02 https://www.encodeproject.org/files/ENCFF321WRZ/@@download/ENCFF321WRZ.bam released s3://encode-public/2020/09/03/f0b3cb99-e34a-4f46-a294-73d60bc24d58/ENCFF321WRZ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF346JZP bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 51 /files/ENCFF000ARK/, /files/ENCFF110MCL/ 336327776 ENCODE Processing Pipeline e23eccb9d8ad07926103777e8f3d871e https://www.encodeproject.org/files/ENCFF346JZP/@@download/ENCFF346JZP.bam released s3://encode-public/2020/09/03/5fe52998-b509-49ae-850d-226adb879c63/ENCFF346JZP.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF045SJL bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 51 /files/ENCFF000ARO/, /files/ENCFF110MCL/ 306961755 ENCODE Processing Pipeline 585c2da1def8cee453121fea35469495 https://www.encodeproject.org/files/ENCFF045SJL/@@download/ENCFF045SJL.bam released s3://encode-public/2020/09/03/3dfac58b-388f-46a7-946e-ff501334ae8f/ENCFF045SJL.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF480WOE bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000ARK/ 459478464 ENCODE Processing Pipeline 283d0ae3d531fb01db1dabe83f5a492b https://www.encodeproject.org/files/ENCFF480WOE/@@download/ENCFF480WOE.bam released s3://encode-public/2020/09/29/6cf56cb1-b5d4-45d1-a559-bfaa3deec3c7/ENCFF480WOE.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF107WQV bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000ARO/ 404219226 ENCODE Processing Pipeline e1a2f785b4e3d771e14e3e869d7af4ad https://www.encodeproject.org/files/ENCFF107WQV/@@download/ENCFF107WQV.bam released s3://encode-public/2020/09/29/d289bd33-8cf3-4129-aba7-4e5425c0219a/ENCFF107WQV.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth ENCFF708SHO bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 47 /files/ENCFF110MCL/, /files/ENCFF000ARK/ 320846978 ENCODE Processing Pipeline 4b2ec165e4f8495b5d82b69cb6732731 https://www.encodeproject.org/files/ENCFF708SHO/@@download/ENCFF708SHO.bam released s3://encode-public/2020/12/10/1d5b9365-9c81-4b73-afdb-9d8d64bb9496/ENCFF708SHO.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF834GHC bam bam alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 47 /files/ENCFF000ARO/, /files/ENCFF110MCL/ 290693373 ENCODE Processing Pipeline bb9bd6ef9412a64fbb8ab679c6032927 https://www.encodeproject.org/files/ENCFF834GHC/@@download/ENCFF834GHC.bam released s3://encode-public/2020/12/10/33cc365f-2f2d-4465-994d-c9a28453939f/ENCFF834GHC.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF903YLX bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 47 /files/ENCFF110MCL/, /files/ENCFF000ARK/ 581869678 ENCODE Processing Pipeline 7d9241f272081c899f7ca1b1a18212bb https://www.encodeproject.org/files/ENCFF903YLX/@@download/ENCFF903YLX.bam released s3://encode-public/2020/12/10/0d6bdc61-3a14-41b7-b809-e9ef93ae0bc0/ENCFF903YLX.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF154PRI bam bam unfiltered alignments GRCh38 ENCSR000AKJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 47 /files/ENCFF000ARO/, /files/ENCFF110MCL/ 505559622 ENCODE Processing Pipeline 56267766deef5827e71e18aedff5f3e9 https://www.encodeproject.org/files/ENCFF154PRI/@@download/ENCFF154PRI.bam released s3://encode-public/2020/12/10/afbc44eb-1510-41af-aee0-b9ff20807e59/ENCFF154PRI.bam ENCODE4 v1.6.1 GRCh38 released insufficient read depth ENCFF000ANS bam bam alignments hg19 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 /files/ENCFF000AOG/ 1650447405 Bradley Bernstein, Broad c4a02288e73432a0cad59426c173b36b https://www.encodeproject.org/files/ENCFF000ANS/@@download/ENCFF000ANS.bam archived s3://encode-public/2010/11/16/9273e3cf-5302-4beb-925d-7ed87cc1ab7e/ENCFF000ANS.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000ANU bam bam alignments hg19 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 /files/ENCFF000AOF/ 1474792119 Bradley Bernstein, Broad ad4421fcd0c4f1c39ddd1c86cc887537 https://www.encodeproject.org/files/ENCFF000ANU/@@download/ENCFF000ANU.bam archived s3://encode-public/2010/11/16/43187020-43ba-4c7d-82d8-577a5f23873c/ENCFF000ANU.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000ANX bigWig bigWig signal hg19 ENCSR000ASA Control ChIP-seq EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 559102536 Bradley Bernstein, Broad d9fcb7da153344d686d714099f15b48c https://www.encodeproject.org/files/ENCFF000ANX/@@download/ENCFF000ANX.bigWig archived s3://encode-public/2010/11/16/b9810e82-b06e-47f3-85d6-8813328c14e0/ENCFF000ANX.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000AOF fastq fastq reads ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 single-ended 1536113996 Bradley Bernstein, Broad 3a843e72a7e9cd2aa8c00980834cff80 SRA:SRR5331429 https://www.encodeproject.org/files/ENCFF000AOF/@@download/ENCFF000AOF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/11/16/e6125c37-ca28-4d24-aaa2-a1e28c41ac02/ENCFF000AOF.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF000AOG fastq fastq reads ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 single-ended 1602740302 Bradley Bernstein, Broad 62712876a0ca15550f0d079f954242ce SRA:SRR5331428 https://www.encodeproject.org/files/ENCFF000AOG/@@download/ENCFF000AOG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2010/11/16/288dd9c4-6512-40b9-b195-21a2d6b42644/ENCFF000AOG.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF596NBD bam bam unfiltered alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000AOG/ 2086083393 ENCODE Processing Pipeline 40ddbf2e31dabc650f94ca1503ebdd0f https://www.encodeproject.org/files/ENCFF596NBD/@@download/ENCFF596NBD.bam released s3://encode-public/2016/07/13/4375fb4c-885b-4284-add6-e73f14b7c8fe/ENCFF596NBD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF520YRJ bam bam alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AOF/ 899438209 ENCODE Processing Pipeline 2344b9381ce3ccfb4d804aa6812e5975 https://www.encodeproject.org/files/ENCFF520YRJ/@@download/ENCFF520YRJ.bam released s3://encode-public/2016/07/13/8a6af080-04df-49ac-9b7f-090a4ccc04a3/ENCFF520YRJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF181BIE bam bam unfiltered alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000AOF/ 1909645919 ENCODE Processing Pipeline 2a815aae7031eeea3ca6be5f203f700d https://www.encodeproject.org/files/ENCFF181BIE/@@download/ENCFF181BIE.bam released s3://encode-public/2016/07/13/a3af529a-303f-4696-9a4d-37fbf72f6f56/ENCFF181BIE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF531LXG bam bam alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000AOG/ 1520352116 ENCODE Processing Pipeline c6d355e41812c2446a105bd90b018747 https://www.encodeproject.org/files/ENCFF531LXG/@@download/ENCFF531LXG.bam released s3://encode-public/2016/07/13/a1f726ea-e9d3-4cf2-93f8-7989eba1cf8c/ENCFF531LXG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF095OKQ bam bam unfiltered alignments hg19 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AOF/ 1892939180 ENCODE Processing Pipeline 0e545e7299027d94a3637b17adfa4c16 https://www.encodeproject.org/files/ENCFF095OKQ/@@download/ENCFF095OKQ.bam released s3://encode-public/2016/11/05/78aab959-7bfe-41ec-881a-eefb92f3d67c/ENCFF095OKQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF247ZSR bam bam unfiltered alignments hg19 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000AOG/ 2071475021 ENCODE Processing Pipeline 14b84cc086b9d041275bd09fc790ac24 https://www.encodeproject.org/files/ENCFF247ZSR/@@download/ENCFF247ZSR.bam released s3://encode-public/2016/11/05/67d471c5-dc9a-4e80-94d5-9538436d9c87/ENCFF247ZSR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF245LFR bam bam alignments hg19 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000AOG/ 1520669441 ENCODE Processing Pipeline 7caac84f646c8d357dbc9ae2b4d402f5 https://www.encodeproject.org/files/ENCFF245LFR/@@download/ENCFF245LFR.bam released s3://encode-public/2016/11/05/409a0727-cad8-452b-b4e6-514e0c7fa155/ENCFF245LFR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF833VDQ bam bam alignments hg19 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000AOF/ 899695589 ENCODE Processing Pipeline 4c65fbde8bb78d7aff93361069c1b252 https://www.encodeproject.org/files/ENCFF833VDQ/@@download/ENCFF833VDQ.bam released s3://encode-public/2016/11/05/c5eaaa3c-6032-4680-bf5a-be40afae92f8/ENCFF833VDQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF217HXU tagAlign tagAlign alignments hg19 ENCSR000ASA Control ChIP-seq EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 204033980 Anshul Kundaje, Stanford 12f375091f4e5eaef686cade2f78fe21 https://www.encodeproject.org/files/ENCFF217HXU/@@download/ENCFF217HXU.tagAlign.gz archived s3://encode-public/2016/07/19/f94b46f3-4ef2-4beb-8ce2-fff05b752a50/ENCFF217HXU.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF177YPJ bam bam unfiltered alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 /files/ENCFF000AOG/, /files/ENCFF110MCL/ 2036672217 ENCODE Processing Pipeline 1c28a4e5bf7816d016771839acfd1d9f https://www.encodeproject.org/files/ENCFF177YPJ/@@download/ENCFF177YPJ.bam released s3://encode-public/2020/09/03/746bc731-1db9-4aea-9886-5c8e6dfa1ce9/ENCFF177YPJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF309KNP bam bam alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000AOF/ 978485039 ENCODE Processing Pipeline 6feaa0431775200519f31587b760ab03 https://www.encodeproject.org/files/ENCFF309KNP/@@download/ENCFF309KNP.bam released s3://encode-public/2020/09/03/e828b1b4-0d4b-47b5-bfa7-cbab8aeb3516/ENCFF309KNP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF151WCP bam bam alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 1 1_1 36 /files/ENCFF000AOG/, /files/ENCFF110MCL/ 1646118455 ENCODE Processing Pipeline e62d373bc148d6834885830574e4ac80 https://www.encodeproject.org/files/ENCFF151WCP/@@download/ENCFF151WCP.bam released s3://encode-public/2020/09/03/0ed3f2ef-b24a-46c4-9e18-dc940ed5940a/ENCFF151WCP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF288HOK bam bam unfiltered alignments GRCh38 ENCSR000ASA Control ChIP-seq /human-donors/ENCDO183AAA/ EFO:0007074 DND-41 cell line Homo sapiens DNA 2012-03-06 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000AOF/ 1862839090 ENCODE Processing Pipeline 65f37f1605c69e96b1c713a0109d07be https://www.encodeproject.org/files/ENCFF288HOK/@@download/ENCFF288HOK.bam released s3://encode-public/2020/09/03/11e462a8-5eb9-4549-8373-432c5616397a/ENCFF288HOK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF293UEE fastq fastq reads ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 130977142 Michael Snyder, Stanford 2e55d8d478d4dce4561caeb62ec4e489 https://www.encodeproject.org/files/ENCFF293UEE/@@download/ENCFF293UEE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/30906d24-c881-4fc3-b290-ea8dca1ffba6/ENCFF293UEE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF554CQM fastq fastq reads ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 169659771 Michael Snyder, Stanford e1ea50a121e978d3ad3054aa360c7744 https://www.encodeproject.org/files/ENCFF554CQM/@@download/ENCFF554CQM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/7dba3288-d485-47ad-9b6b-1e3bd6fe79ee/ENCFF554CQM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF709DHL bam bam alignments ce10 ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF293UEE/, /files/ENCFF554CQM/, /files/ENCFF987UMF/ 393799449 Kevin White, UChicago c98a15999602fcfb1240b2eda73f8018 https://www.encodeproject.org/files/ENCFF709DHL/@@download/ENCFF709DHL.bam released s3://encode-public/2016/10/18/051e2029-15ac-412b-9774-161049b740a7/ENCFF709DHL.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF241LAB bam bam alignments ce11 ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF293UEE/, /files/ENCFF554CQM/, /files/ENCFF586MOL/ 394244801 Kevin White, UChicago 179507331748ad3a1848d98e74072b82 https://www.encodeproject.org/files/ENCFF241LAB/@@download/ENCFF241LAB.bam released s3://encode-public/2016/10/18/cba04228-11a2-42af-8488-f0cac6bab881/ENCFF241LAB.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF450DTM bigWig bigWig read-depth normalized signal ce10 ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF709DHL/ 10014702 Kevin White, UChicago 6b77c3dbfafa3742e7122063d7a2a2a5 https://www.encodeproject.org/files/ENCFF450DTM/@@download/ENCFF450DTM.bigWig released s3://encode-public/2016/10/20/70dffec7-3531-49c2-8401-36b27f7c3c3a/ENCFF450DTM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF611RLH bigWig bigWig signal of unique reads ce10 ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF709DHL/ 10030497 Kevin White, UChicago 53b2e82a327759356c0e3a9cc5218ac7 https://www.encodeproject.org/files/ENCFF611RLH/@@download/ENCFF611RLH.bigWig released s3://encode-public/2016/10/20/222f2172-b877-4153-a8c9-f5e0a531a4b9/ENCFF611RLH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF878TGA bigWig bigWig read-depth normalized signal ce11 ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF241LAB/ 10005317 Kevin White, UChicago 0883c6b05752a9745ff9a34ef90a12ca https://www.encodeproject.org/files/ENCFF878TGA/@@download/ENCFF878TGA.bigWig released s3://encode-public/2016/10/20/ea4d8229-a094-4a46-8d37-dc2b40c4a651/ENCFF878TGA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF426XBS bigWig bigWig signal of unique reads ce11 ENCSR124RLN Control ChIP-seq /worm-donors/ENCDO498LDM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175462/'], '@type': ['Target', 'Item'], 'name': 'nhr-6-celegans', 'label': 'nhr-6', '@id': '/targets/nhr-6-celegans/', 'title': 'nhr-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1e06ba42-a394-4723-b216-c75db1d3e550', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF241LAB/ 10027690 Kevin White, UChicago d1f2f29348d9a74b9afecad79845cf8a https://www.encodeproject.org/files/ENCFF426XBS/@@download/ENCFF426XBS.bigWig released s3://encode-public/2016/10/20/b2a0eeed-81ce-4389-b21c-ce287a990d14/ENCFF426XBS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF148KBR fastq fastq reads ENCSR254VFL Control ChIP-seq /fly-donors/ENCDO794ADC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35764/'], '@type': ['Target', 'Item'], 'name': 'Hey-dmelanogaster', 'label': 'Hey', '@id': '/targets/Hey-dmelanogaster/', 'title': 'Hey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62b09eea-eca1-449f-b646-970678129180', 'status': 'released'} dm3 2R 7982958 8004842 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 675476354 Kevin White, UChicago 9021f0621c3120f3ff1e11b88b731de1 https://www.encodeproject.org/files/ENCFF148KBR/@@download/ENCFF148KBR.fastq.gz Illumina HiSeq 4000 /files/ENCFF107IGM/ released s3://encode-public/2018/05/29/81b0a295-1802-4d77-9a58-656de1ba3e2a/ENCFF148KBR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF499PLN fastq fastq reads ENCSR254VFL Control ChIP-seq /fly-donors/ENCDO794ADC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35764/'], '@type': ['Target', 'Item'], 'name': 'Hey-dmelanogaster', 'label': 'Hey', '@id': '/targets/Hey-dmelanogaster/', 'title': 'Hey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62b09eea-eca1-449f-b646-970678129180', 'status': 'released'} dm3 2R 7982958 8004842 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1038438464 Kevin White, UChicago f9b2e9cccdf59b6ca1d70f24f29d40b5 https://www.encodeproject.org/files/ENCFF499PLN/@@download/ENCFF499PLN.fastq.gz Illumina HiSeq 4000 /files/ENCFF107IGM/ released s3://encode-public/2018/05/29/f24984da-51ef-4396-85c0-d5ad571aab58/ENCFF499PLN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF518XKB bam bam alignments dm6 ENCSR254VFL Control ChIP-seq /fly-donors/ENCDO794ADC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35764/'], '@type': ['Target', 'Item'], 'name': 'Hey-dmelanogaster', 'label': 'Hey', '@id': '/targets/Hey-dmelanogaster/', 'title': 'Hey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62b09eea-eca1-449f-b646-970678129180', 'status': 'released'} dm3 2R 7982958 8004842 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF499PLN/, /files/ENCFF148KBR/, /files/ENCFF479RCH/ 2277143191 Kevin White, UChicago 7b713e177b6c37ff23d1db3bf0e745d7 https://www.encodeproject.org/files/ENCFF518XKB/@@download/ENCFF518XKB.bam released s3://encode-public/2018/05/29/0dd0ac70-ca5d-4355-bdae-bfdfc57694ce/ENCFF518XKB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF963EJE bigWig bigWig signal of unique reads dm6 ENCSR254VFL Control ChIP-seq /fly-donors/ENCDO794ADC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35764/'], '@type': ['Target', 'Item'], 'name': 'Hey-dmelanogaster', 'label': 'Hey', '@id': '/targets/Hey-dmelanogaster/', 'title': 'Hey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62b09eea-eca1-449f-b646-970678129180', 'status': 'released'} dm3 2R 7982958 8004842 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF518XKB/ 17819798 Kevin White, UChicago 4b56883541088def6acc5343cd53b058 https://www.encodeproject.org/files/ENCFF963EJE/@@download/ENCFF963EJE.bigWig released s3://encode-public/2018/05/30/1fa13294-ae7b-4490-9588-2788bd2f8c16/ENCFF963EJE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF919OQV bigWig bigWig read-depth normalized signal dm6 ENCSR254VFL Control ChIP-seq /fly-donors/ENCDO794ADC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35764/'], '@type': ['Target', 'Item'], 'name': 'Hey-dmelanogaster', 'label': 'Hey', '@id': '/targets/Hey-dmelanogaster/', 'title': 'Hey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62b09eea-eca1-449f-b646-970678129180', 'status': 'released'} dm3 2R 7982958 8004842 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF518XKB/ 17822349 Kevin White, UChicago 6ce6502d9cc67fc7d06a255e30beb44d https://www.encodeproject.org/files/ENCFF919OQV/@@download/ENCFF919OQV.bigWig released s3://encode-public/2018/05/30/3d5f5d81-1a85-470b-9028-7717d93938bf/ENCFF919OQV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF027SZK fastq fastq reads ENCSR235ERJ Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 808091740 Kevin White, UChicago e64e16e4aeca935c199736af0e120d70 https://www.encodeproject.org/files/ENCFF027SZK/@@download/ENCFF027SZK.fastq.gz Illumina HiSeq 4000 /files/ENCFF240NBJ/ released s3://encode-public/2018/05/29/20a0c2d7-7b26-4536-ba56-a7ae3d93912c/ENCFF027SZK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF451KHK bam bam alignments dm6 ENCSR235ERJ Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF027SZK/, /files/ENCFF479RCH/ 1069474981 Kevin White, UChicago aefc7d067ef7f6b51c221d67dcbbc8eb https://www.encodeproject.org/files/ENCFF451KHK/@@download/ENCFF451KHK.bam released s3://encode-public/2018/05/29/14d4b449-2337-49ac-b2aa-610d59a1710a/ENCFF451KHK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF174QRW bigWig bigWig signal of unique reads dm6 ENCSR235ERJ Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF451KHK/ 17593354 Kevin White, UChicago 585de9166bb2b71cdb581ecc730a74a0 https://www.encodeproject.org/files/ENCFF174QRW/@@download/ENCFF174QRW.bigWig released s3://encode-public/2018/05/30/c181f5cc-da65-4911-9701-ff5d983e9754/ENCFF174QRW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF043ZGM bigWig bigWig read-depth normalized signal dm6 ENCSR235ERJ Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2018-06-12 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF451KHK/ 17612912 Kevin White, UChicago dad6afa35f6409ccfc86e18997989968 https://www.encodeproject.org/files/ENCFF043ZGM/@@download/ENCFF043ZGM.bigWig released s3://encode-public/2018/05/30/701d5d8d-36d0-4067-98d9-3697e14c34d2/ENCFF043ZGM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF639YKZ fastq fastq reads ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 174780981 Michael Snyder, Stanford 248076f36f39c417d52347267db1a60d https://www.encodeproject.org/files/ENCFF639YKZ/@@download/ENCFF639YKZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/36a96fe3-645a-4c92-bdc4-00c11575d469/ENCFF639YKZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF746FUH fastq fastq reads ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 189559340 Michael Snyder, Stanford 1f029b767782db1c87f05f311eb4950d https://www.encodeproject.org/files/ENCFF746FUH/@@download/ENCFF746FUH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/9165e393-4ce4-4618-bc7f-55eacab055c8/ENCFF746FUH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF823FZG bam bam alignments ce10 ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF746FUH/, /files/ENCFF639YKZ/, /files/ENCFF987UMF/ 474439481 Kevin White, UChicago 42ad4c3422948f8daae00a0f5ca714e0 https://www.encodeproject.org/files/ENCFF823FZG/@@download/ENCFF823FZG.bam released s3://encode-public/2016/10/18/83de91ad-cd26-4926-8779-bd34197b8011/ENCFF823FZG.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF886SVS bam bam alignments ce11 ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF746FUH/, /files/ENCFF639YKZ/, /files/ENCFF586MOL/ 474936839 Kevin White, UChicago 872e7a148263afd68c3af5874ca5839a https://www.encodeproject.org/files/ENCFF886SVS/@@download/ENCFF886SVS.bam released s3://encode-public/2016/10/19/b1d78f93-c27e-4417-a1b7-cb7c86efdd51/ENCFF886SVS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF998KQA bigWig bigWig read-depth normalized signal ce10 ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF823FZG/ 10050881 Kevin White, UChicago e2d3486b0a961b99499bd1a400fce602 https://www.encodeproject.org/files/ENCFF998KQA/@@download/ENCFF998KQA.bigWig released s3://encode-public/2016/10/20/eb801a7a-13b6-4487-9f99-87810ae0bb01/ENCFF998KQA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF059GXH bigWig bigWig signal of unique reads ce10 ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF823FZG/ 10003254 Kevin White, UChicago c7ee1c00d3268f1b8a1756cf7226a193 https://www.encodeproject.org/files/ENCFF059GXH/@@download/ENCFF059GXH.bigWig released s3://encode-public/2016/10/20/2cd2b023-9424-400a-97fa-0a6aade058ea/ENCFF059GXH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF838FUD bigWig bigWig read-depth normalized signal ce11 ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF886SVS/ 10029360 Kevin White, UChicago 942b8fbfe60c5cb3e115f2807ee4dfaf https://www.encodeproject.org/files/ENCFF838FUD/@@download/ENCFF838FUD.bigWig released s3://encode-public/2016/10/21/5e076974-7815-49bf-9d3a-5b302e86b378/ENCFF838FUD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF863TJC bigWig bigWig signal of unique reads ce11 ENCSR563NMV Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF886SVS/ 9998032 Kevin White, UChicago c9e93a53ca2d12d8a29eede7943ff18c https://www.encodeproject.org/files/ENCFF863TJC/@@download/ENCFF863TJC.bigWig released s3://encode-public/2016/10/21/804359e2-9ad4-404e-84f0-6ffc8b26a020/ENCFF863TJC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF838IMY fastq fastq reads ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 288006205 Michael Snyder, Stanford e82602eb55da85c5214374102b20317f https://www.encodeproject.org/files/ENCFF838IMY/@@download/ENCFF838IMY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/082798b4-cad3-4b00-a75c-c53f45a4c14c/ENCFF838IMY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF524APR fastq fastq reads ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 235169719 Michael Snyder, Stanford 9724e5b35e5412cc576dd7f794263ae0 https://www.encodeproject.org/files/ENCFF524APR/@@download/ENCFF524APR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/9f109393-2f83-43f3-ba9b-aa4b16f4c50e/ENCFF524APR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF938VOX bam bam alignments ce10 ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF838IMY/, /files/ENCFF524APR/, /files/ENCFF987UMF/ 541609243 Kevin White, UChicago e126640b493cc930825bc3d210ef4547 https://www.encodeproject.org/files/ENCFF938VOX/@@download/ENCFF938VOX.bam released s3://encode-public/2016/10/18/82902c4f-3be5-47df-b321-735ef23ffc00/ENCFF938VOX.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF056UCG bam bam alignments ce11 ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF838IMY/, /files/ENCFF524APR/, /files/ENCFF586MOL/ 542017449 Kevin White, UChicago 2f0833e3cb828e7f6890aaa792141c8d https://www.encodeproject.org/files/ENCFF056UCG/@@download/ENCFF056UCG.bam released s3://encode-public/2016/10/19/bd1b4754-b863-452e-9a3a-8223b0da2808/ENCFF056UCG.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF124GUZ bigWig bigWig read-depth normalized signal ce10 ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF938VOX/ 9982921 Kevin White, UChicago 51384472f2787d1560ab9d506fe25ef2 https://www.encodeproject.org/files/ENCFF124GUZ/@@download/ENCFF124GUZ.bigWig released s3://encode-public/2016/10/20/0b46ec42-51b9-489b-a4dd-2e702e768be5/ENCFF124GUZ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF087OPI bigWig bigWig signal of unique reads ce10 ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF938VOX/ 9985155 Kevin White, UChicago f88e1f5ff75156c5b1c6d7da253a0d00 https://www.encodeproject.org/files/ENCFF087OPI/@@download/ENCFF087OPI.bigWig released s3://encode-public/2016/10/20/f522342b-ff5d-4045-b7a6-fd694390d367/ENCFF087OPI.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF040OEO bigWig bigWig read-depth normalized signal ce11 ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF056UCG/ 9980683 Kevin White, UChicago 60cbe75b06130c723ea42cd81e842add https://www.encodeproject.org/files/ENCFF040OEO/@@download/ENCFF040OEO.bigWig released s3://encode-public/2016/10/21/81adb7aa-ba95-4372-b948-3a56330a3f10/ENCFF040OEO.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF022TVD bigWig bigWig signal of unique reads ce11 ENCSR577MAM Control ChIP-seq /worm-donors/ENCDO651IBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176068/'], '@type': ['Target', 'Item'], 'name': 'lin-39-celegans', 'label': 'lin-39', '@id': '/targets/lin-39-celegans/', 'title': 'lin-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '43ac72a1-0183-45c2-863a-d8bb1e38f08a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF056UCG/ 9983580 Kevin White, UChicago 1e7f9ce873321d55c60bcfb256cb1d35 https://www.encodeproject.org/files/ENCFF022TVD/@@download/ENCFF022TVD.bigWig released s3://encode-public/2016/10/21/52debe25-ec48-4cb1-a5bc-b9dbd76db910/ENCFF022TVD.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF494PEG fastq fastq reads ENCSR377FNA Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF923IOZ/ 3672821774 Michael Snyder, Stanford 1ebb535536283aa8af7f906893bba527 SRA:SRR13804150 https://www.encodeproject.org/files/ENCFF494PEG/@@download/ENCFF494PEG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/8187c3d2-8e71-4bc8-bdc1-f77f751f55ae/ENCFF494PEG.fastq.gz ENCFF923IOZ fastq fastq reads ENCSR377FNA Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF494PEG/ 4107048792 Michael Snyder, Stanford b1407ef466b81aae8440c6e83a4523b5 SRA:SRR13804150 https://www.encodeproject.org/files/ENCFF923IOZ/@@download/ENCFF923IOZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/08/12/1c7968f7-1f73-4207-ab10-5db14a300876/ENCFF923IOZ.fastq.gz ENCFF114FWX bam bam unfiltered alignments GRCh38 ENCSR377FNA Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF923IOZ/, /files/ENCFF110MCL/, /files/ENCFF494PEG/ 7573717932 ENCODE Processing Pipeline e314c3e43ed176a890f2bbcd2c186774 https://www.encodeproject.org/files/ENCFF114FWX/@@download/ENCFF114FWX.bam released s3://encode-public/2020/08/20/33928308-33c8-4c54-bacf-579a55af654e/ENCFF114FWX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF955LNM bam bam alignments GRCh38 ENCSR377FNA Control ChIP-seq /human-donors/ENCDO000ACQ/ EFO:0005725 BE2C cell line Homo sapiens DNA 2020-08-21 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF923IOZ/, /files/ENCFF110MCL/, /files/ENCFF494PEG/ 6172123595 ENCODE Processing Pipeline 678b7a7539aef156f36330209dae0932 https://www.encodeproject.org/files/ENCFF955LNM/@@download/ENCFF955LNM.bam released s3://encode-public/2020/08/20/cfc61ae6-9a85-4fc5-bd32-98dce16d66f5/ENCFF955LNM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF965PUW fastq fastq reads ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 96673931 Michael Snyder, Stanford fe7c494cb4ae261c5ebf947188ca71a4 https://www.encodeproject.org/files/ENCFF965PUW/@@download/ENCFF965PUW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/24038181-3182-4ce8-82fc-62222f607e48/ENCFF965PUW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF859MDR fastq fastq reads ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 112552449 Michael Snyder, Stanford 1d9c8d839fc05389e19e12c3ecec3699 https://www.encodeproject.org/files/ENCFF859MDR/@@download/ENCFF859MDR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/6c8e12da-173f-4235-927c-e8a1aa414896/ENCFF859MDR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF766GOD bigWig bigWig read-depth normalized signal ce10 ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF233LZM/ 9999608 Kevin White, UChicago be6a433b7965dafc4641781b31087304 https://www.encodeproject.org/files/ENCFF766GOD/@@download/ENCFF766GOD.bigWig released s3://encode-public/2016/10/20/3cc4c8f7-47cf-460c-94e1-dc872a4888cf/ENCFF766GOD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF248TAS bigWig bigWig signal of unique reads ce10 ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF233LZM/ 9979839 Kevin White, UChicago 2771391963da33b89ab02d717a7d8445 https://www.encodeproject.org/files/ENCFF248TAS/@@download/ENCFF248TAS.bigWig released s3://encode-public/2016/10/20/4221fc54-67bc-4625-9da6-e6c2a98a05f3/ENCFF248TAS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF233LZM bam bam alignments ce10 ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF965PUW/, /files/ENCFF859MDR/, /files/ENCFF987UMF/ 244887698 Kevin White, UChicago a6418a2725a6a567299d31e2f37f0d83 https://www.encodeproject.org/files/ENCFF233LZM/@@download/ENCFF233LZM.bam released s3://encode-public/2018/01/05/a753288a-e117-4443-a176-9a8c03215622/ENCFF233LZM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF454TGC bam bam alignments ce11 ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF965PUW/, /files/ENCFF859MDR/, /files/ENCFF586MOL/ 245100289 Kevin White, UChicago 56fdb3ff15a33283b3e6efb22b31a732 https://www.encodeproject.org/files/ENCFF454TGC/@@download/ENCFF454TGC.bam released s3://encode-public/2018/01/05/07c2cbb4-02f5-44fe-98b8-5eebb3bd1a40/ENCFF454TGC.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF445ZVG bigWig bigWig read-depth normalized signal ce11 ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF454TGC/ 10000207 Kevin White, UChicago c4d3d7ed5fbc002b7fb0d6aaec1ef63c https://www.encodeproject.org/files/ENCFF445ZVG/@@download/ENCFF445ZVG.bigWig released s3://encode-public/2018/01/22/41cef160-6efc-4e00-99a4-aaa423c66d77/ENCFF445ZVG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF396ESE bigWig bigWig signal of unique reads ce11 ENCSR032JLQ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF454TGC/ 9979980 Kevin White, UChicago f510bdbd20094979c60ab83983cf411e https://www.encodeproject.org/files/ENCFF396ESE/@@download/ENCFF396ESE.bigWig released s3://encode-public/2018/01/22/44ff6584-d7c0-4425-8bd4-087edcdf740e/ENCFF396ESE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF112MZY fastq fastq reads ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 173125047 Michael Snyder, Stanford 72f4b2d3fe43f581dcf74ac177493a46 https://www.encodeproject.org/files/ENCFF112MZY/@@download/ENCFF112MZY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c01d51c4-8dcb-4123-8bdc-d9deb9028807/ENCFF112MZY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF266EXL fastq fastq reads ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 146221520 Michael Snyder, Stanford ae93a37528f45404d58c21a93696006b https://www.encodeproject.org/files/ENCFF266EXL/@@download/ENCFF266EXL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fa466ae8-8c66-4bb3-9209-692f87e6f002/ENCFF266EXL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF921CZQ bam bam alignments ce10 ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF266EXL/, /files/ENCFF112MZY/, /files/ENCFF987UMF/ 415953415 Kevin White, UChicago 79daf8afe2811b94c61e5df462120a73 https://www.encodeproject.org/files/ENCFF921CZQ/@@download/ENCFF921CZQ.bam released s3://encode-public/2016/10/18/68a84056-617a-494b-9d9d-bf856134d8be/ENCFF921CZQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF542PTF bam bam alignments ce11 ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF266EXL/, /files/ENCFF112MZY/, /files/ENCFF586MOL/ 416417921 Kevin White, UChicago 19bb0ced1a38ab51d96025516ca6d087 https://www.encodeproject.org/files/ENCFF542PTF/@@download/ENCFF542PTF.bam released s3://encode-public/2016/10/18/b6aab476-cdb6-44c6-8ec4-d3f7cd5c2451/ENCFF542PTF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF929NTD bigWig bigWig read-depth normalized signal ce10 ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF921CZQ/ 10036302 Kevin White, UChicago b939748af17b3b2ab68c662d9003c933 https://www.encodeproject.org/files/ENCFF929NTD/@@download/ENCFF929NTD.bigWig released s3://encode-public/2016/10/20/7788b479-a6db-4382-985c-197e50ff20c3/ENCFF929NTD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF265KOT bigWig bigWig signal of unique reads ce10 ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF921CZQ/ 10022710 Kevin White, UChicago a83c2e7fc5f4736825256233ccb836c3 https://www.encodeproject.org/files/ENCFF265KOT/@@download/ENCFF265KOT.bigWig released s3://encode-public/2016/10/20/1796708e-e7c4-42a0-91f2-8fd82d20afdd/ENCFF265KOT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF815FDC bigWig bigWig signal of unique reads ce11 ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF542PTF/ 10019290 Kevin White, UChicago f0f4eb0ff8fe7adc0b08a8858c6aca49 https://www.encodeproject.org/files/ENCFF815FDC/@@download/ENCFF815FDC.bigWig released s3://encode-public/2016/10/20/e7f5dd35-fe67-44cd-821f-646bbbe55355/ENCFF815FDC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF552VSH bigWig bigWig read-depth normalized signal ce11 ENCSR767NKE Control ChIP-seq /worm-donors/ENCDO256QLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183635/'], '@type': ['Target', 'Item'], 'name': 'nhr-129-celegans', 'label': 'nhr-129', '@id': '/targets/nhr-129-celegans/', 'title': 'nhr-129 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f4da7281-468d-4e4e-8595-7fbae76a01fb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF542PTF/ 10026670 Kevin White, UChicago 002774b33efa87a3c34f78d1fc80d727 https://www.encodeproject.org/files/ENCFF552VSH/@@download/ENCFF552VSH.bigWig released s3://encode-public/2016/10/20/97b2f793-da69-466c-88e7-2f465232cad7/ENCFF552VSH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF626GOE fastq fastq reads ENCSR111CQR Control ChIP-seq /fly-donors/ENCDO706VFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32517/'], '@type': ['Target', 'Item'], 'name': 'CG8944-dmelanogaster', 'label': 'CG8944', '@id': '/targets/CG8944-dmelanogaster/', 'title': 'CG8944 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06cfd74d-6a98-4d7c-b8ef-7567f0dd9f41', 'status': 'released'} dm3 X 15629989 15650490 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 666542179 Kevin White, UChicago 83b5c97457942d44e2b0b055c11db1cb https://www.encodeproject.org/files/ENCFF626GOE/@@download/ENCFF626GOE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/24e588cd-1da8-4a86-a9f9-ffe35fb90de7/ENCFF626GOE.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF037UMY bam bam alignments dm3 ENCSR111CQR Control ChIP-seq /fly-donors/ENCDO706VFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32517/'], '@type': ['Target', 'Item'], 'name': 'CG8944-dmelanogaster', 'label': 'CG8944', '@id': '/targets/CG8944-dmelanogaster/', 'title': 'CG8944 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06cfd74d-6a98-4d7c-b8ef-7567f0dd9f41', 'status': 'released'} dm3 X 15629989 15650490 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF626GOE/ 971157596 Kevin White, UChicago 881db6d8ba1ea54d1efaef10c2ddefba https://www.encodeproject.org/files/ENCFF037UMY/@@download/ENCFF037UMY.bam released s3://encode-public/2015/08/03/c75e6499-cf5e-429a-894e-cc58a3c94385/ENCFF037UMY.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF532HBK bigWig bigWig read-depth normalized signal dm3 ENCSR111CQR Control ChIP-seq /fly-donors/ENCDO706VFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32517/'], '@type': ['Target', 'Item'], 'name': 'CG8944-dmelanogaster', 'label': 'CG8944', '@id': '/targets/CG8944-dmelanogaster/', 'title': 'CG8944 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06cfd74d-6a98-4d7c-b8ef-7567f0dd9f41', 'status': 'released'} dm3 X 15629989 15650490 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF037UMY/ 15355846 Kevin White, UChicago ea7a360e6ade03a20fbfe7b9ff6840c0 https://www.encodeproject.org/files/ENCFF532HBK/@@download/ENCFF532HBK.bigWig released s3://encode-public/2015/10/05/257b8dff-15b0-441d-99dd-2ebc207e8bc1/ENCFF532HBK.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF253XYT bigWig bigWig signal of unique reads dm3 ENCSR111CQR Control ChIP-seq /fly-donors/ENCDO706VFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32517/'], '@type': ['Target', 'Item'], 'name': 'CG8944-dmelanogaster', 'label': 'CG8944', '@id': '/targets/CG8944-dmelanogaster/', 'title': 'CG8944 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06cfd74d-6a98-4d7c-b8ef-7567f0dd9f41', 'status': 'released'} dm3 X 15629989 15650490 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF037UMY/ 15355026 Kevin White, UChicago 285e06b1c1fd7b9135dd62e185f1192e https://www.encodeproject.org/files/ENCFF253XYT/@@download/ENCFF253XYT.bigWig released s3://encode-public/2015/10/05/0a9c9daa-8adf-449b-8e99-14c619daa6ad/ENCFF253XYT.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF413WWW bam bam alignments dm6 ENCSR111CQR Control ChIP-seq /fly-donors/ENCDO706VFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32517/'], '@type': ['Target', 'Item'], 'name': 'CG8944-dmelanogaster', 'label': 'CG8944', '@id': '/targets/CG8944-dmelanogaster/', 'title': 'CG8944 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06cfd74d-6a98-4d7c-b8ef-7567f0dd9f41', 'status': 'released'} dm3 X 15629989 15650490 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF626GOE/ 967924207 Kevin White, UChicago a5c28194f0bc494c261d81a5bd58739b https://www.encodeproject.org/files/ENCFF413WWW/@@download/ENCFF413WWW.bam released s3://encode-public/2016/04/21/32b9e298-98d8-4681-8a90-4ccbe8539d25/ENCFF413WWW.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF583UQN bigWig bigWig signal of unique reads dm6 ENCSR111CQR Control ChIP-seq /fly-donors/ENCDO706VFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32517/'], '@type': ['Target', 'Item'], 'name': 'CG8944-dmelanogaster', 'label': 'CG8944', '@id': '/targets/CG8944-dmelanogaster/', 'title': 'CG8944 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06cfd74d-6a98-4d7c-b8ef-7567f0dd9f41', 'status': 'released'} dm3 X 15629989 15650490 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF413WWW/ 17449290 Kevin White, UChicago a2eefef2c50a5a272cf0770f8853aab9 https://www.encodeproject.org/files/ENCFF583UQN/@@download/ENCFF583UQN.bigWig released s3://encode-public/2016/06/21/9cf73f65-768f-46af-9112-fc3338fff526/ENCFF583UQN.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF532FAD bigWig bigWig read-depth normalized signal dm6 ENCSR111CQR Control ChIP-seq /fly-donors/ENCDO706VFM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32517/'], '@type': ['Target', 'Item'], 'name': 'CG8944-dmelanogaster', 'label': 'CG8944', '@id': '/targets/CG8944-dmelanogaster/', 'title': 'CG8944 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06cfd74d-6a98-4d7c-b8ef-7567f0dd9f41', 'status': 'released'} dm3 X 15629989 15650490 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF413WWW/ 17457260 Kevin White, UChicago 73086ec6dacdcd195c6ebc07d1737a6a https://www.encodeproject.org/files/ENCFF532FAD/@@download/ENCFF532FAD.bigWig released s3://encode-public/2016/06/21/e28fefd5-a6d6-4939-a640-73e99c54d27f/ENCFF532FAD.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF809SKJ fastq fastq reads ENCSR280USI Control ChIP-seq /worm-donors/ENCDO053VNW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192054/'], '@type': ['Target', 'Item'], 'name': 'snpc-3.4-celegans', 'label': 'snpc-3.4', '@id': '/targets/snpc-3.4-celegans/', 'title': 'snpc-3.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4cda9b99-cf18-458c-a2d3-404802eb341e', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 55981677 Kevin White, UChicago a6707ad55cc1239bb50f24fed9ef985d https://www.encodeproject.org/files/ENCFF809SKJ/@@download/ENCFF809SKJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/07/30/6300d000-038e-4fa4-a6aa-3776b3c8c431/ENCFF809SKJ.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF131WWL bam bam alignments ce10 ENCSR280USI Control ChIP-seq /worm-donors/ENCDO053VNW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192054/'], '@type': ['Target', 'Item'], 'name': 'snpc-3.4-celegans', 'label': 'snpc-3.4', '@id': '/targets/snpc-3.4-celegans/', 'title': 'snpc-3.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4cda9b99-cf18-458c-a2d3-404802eb341e', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF809SKJ/ 82159717 Kevin White, UChicago 87a0055e4b4d7d6876a95187fc16fb4b https://www.encodeproject.org/files/ENCFF131WWL/@@download/ENCFF131WWL.bam released s3://encode-public/2015/08/07/82f1cba1-fead-4756-a253-21c9db48fcbc/ENCFF131WWL.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF077HBD bigWig bigWig read-depth normalized signal ce10 ENCSR280USI Control ChIP-seq /worm-donors/ENCDO053VNW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192054/'], '@type': ['Target', 'Item'], 'name': 'snpc-3.4-celegans', 'label': 'snpc-3.4', '@id': '/targets/snpc-3.4-celegans/', 'title': 'snpc-3.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4cda9b99-cf18-458c-a2d3-404802eb341e', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF131WWL/ 10015530 Kevin White, UChicago 50e1762f4ac110d968ab60250b1776ea https://www.encodeproject.org/files/ENCFF077HBD/@@download/ENCFF077HBD.bigWig released s3://encode-public/2015/10/02/0d96d95d-96c0-4d03-9471-af46bfbe211a/ENCFF077HBD.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF261NJR bigWig bigWig signal of unique reads ce10 ENCSR280USI Control ChIP-seq /worm-donors/ENCDO053VNW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192054/'], '@type': ['Target', 'Item'], 'name': 'snpc-3.4-celegans', 'label': 'snpc-3.4', '@id': '/targets/snpc-3.4-celegans/', 'title': 'snpc-3.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4cda9b99-cf18-458c-a2d3-404802eb341e', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF131WWL/ 10048655 Kevin White, UChicago fbbcc938c8b0d92155be4d9f0d61a3f0 https://www.encodeproject.org/files/ENCFF261NJR/@@download/ENCFF261NJR.bigWig released s3://encode-public/2015/10/02/109616e9-dc2b-4746-87c0-100100890bb6/ENCFF261NJR.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF183EYA bam bam alignments ce11 ENCSR280USI Control ChIP-seq /worm-donors/ENCDO053VNW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192054/'], '@type': ['Target', 'Item'], 'name': 'snpc-3.4-celegans', 'label': 'snpc-3.4', '@id': '/targets/snpc-3.4-celegans/', 'title': 'snpc-3.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4cda9b99-cf18-458c-a2d3-404802eb341e', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF809SKJ/ 82272559 Kevin White, UChicago 168de0257478c77760dfb5ccb2205bbc https://www.encodeproject.org/files/ENCFF183EYA/@@download/ENCFF183EYA.bam released s3://encode-public/2016/01/20/facc17a0-788a-4cb9-9b24-ed15237df087/ENCFF183EYA.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF900DST bigWig bigWig signal of unique reads ce11 ENCSR280USI Control ChIP-seq /worm-donors/ENCDO053VNW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192054/'], '@type': ['Target', 'Item'], 'name': 'snpc-3.4-celegans', 'label': 'snpc-3.4', '@id': '/targets/snpc-3.4-celegans/', 'title': 'snpc-3.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4cda9b99-cf18-458c-a2d3-404802eb341e', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF183EYA/ 10047825 Kevin White, UChicago 40db081b6d75750596afb74bbaa0b212 https://www.encodeproject.org/files/ENCFF900DST/@@download/ENCFF900DST.bigWig released s3://encode-public/2016/02/03/49ed2e93-1111-4402-8f6b-df05e20ca8dc/ENCFF900DST.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF589OSP bigWig bigWig read-depth normalized signal ce11 ENCSR280USI Control ChIP-seq /worm-donors/ENCDO053VNW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192054/'], '@type': ['Target', 'Item'], 'name': 'snpc-3.4-celegans', 'label': 'snpc-3.4', '@id': '/targets/snpc-3.4-celegans/', 'title': 'snpc-3.4 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4cda9b99-cf18-458c-a2d3-404802eb341e', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF183EYA/ 10017141 Kevin White, UChicago 83f43ce6d5dfa2b5895f87f6cdc1f1e7 https://www.encodeproject.org/files/ENCFF589OSP/@@download/ENCFF589OSP.bigWig released s3://encode-public/2016/02/03/7f1f3e25-7607-4b95-a924-0f6e5e5b59b0/ENCFF589OSP.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents insufficient read depth ENCFF633FHY fastq fastq reads ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 221938574 Michael Snyder, Stanford 095916851446f0cf53d08992730e2211 https://www.encodeproject.org/files/ENCFF633FHY/@@download/ENCFF633FHY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a720e8f5-7ed0-4400-9751-9cf03592b1ed/ENCFF633FHY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF093KIK fastq fastq reads ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 215798206 Michael Snyder, Stanford 1027a16085c1cb82418f20de7a22a0fe https://www.encodeproject.org/files/ENCFF093KIK/@@download/ENCFF093KIK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1bf4b9da-a3f3-4a0d-9052-dbe97cca515a/ENCFF093KIK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF079YGS bam bam alignments ce10 ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF633FHY/, /files/ENCFF093KIK/, /files/ENCFF987UMF/ 554575755 Kevin White, UChicago e71c011ca1e81d22516893c63bbfbd4f https://www.encodeproject.org/files/ENCFF079YGS/@@download/ENCFF079YGS.bam released s3://encode-public/2016/10/18/63d95971-50fb-4e91-82bc-33521a5fd841/ENCFF079YGS.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF006EAP bam bam alignments ce11 ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF633FHY/, /files/ENCFF093KIK/, /files/ENCFF586MOL/ 555133399 Kevin White, UChicago 604911df4df4b3427c05f445af3b2cac https://www.encodeproject.org/files/ENCFF006EAP/@@download/ENCFF006EAP.bam released s3://encode-public/2016/10/19/3117f7d8-8f01-47a7-8849-f4ff6c8f1fd0/ENCFF006EAP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF609OTY bigWig bigWig read-depth normalized signal ce10 ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF079YGS/ 10055311 Kevin White, UChicago d4a86ac6c5bf45f4a9f14b5ac0322cba https://www.encodeproject.org/files/ENCFF609OTY/@@download/ENCFF609OTY.bigWig released s3://encode-public/2016/10/20/3c286e4d-29ff-46f6-85b1-4a73d12a3a73/ENCFF609OTY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF603KLA bigWig bigWig signal of unique reads ce10 ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF079YGS/ 10004034 Kevin White, UChicago 8474d1b7c22eaa5aa408fb813f7aab7b https://www.encodeproject.org/files/ENCFF603KLA/@@download/ENCFF603KLA.bigWig released s3://encode-public/2016/10/20/a37acd3b-88cb-4d8f-9fad-8f08c4859b8e/ENCFF603KLA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF860AJR bigWig bigWig read-depth normalized signal ce11 ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF006EAP/ 10047420 Kevin White, UChicago 4a6f360b9b595bf1be018ce4bdad2755 https://www.encodeproject.org/files/ENCFF860AJR/@@download/ENCFF860AJR.bigWig released s3://encode-public/2016/10/21/3a8a82f4-b08a-4a61-8aa1-640e36a98c56/ENCFF860AJR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF573JOE bigWig bigWig signal of unique reads ce11 ENCSR002EBG Control ChIP-seq /worm-donors/ENCDO737MIX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174202/'], '@type': ['Target', 'Item'], 'name': 'nhr-21-celegans', 'label': 'nhr-21', '@id': '/targets/nhr-21-celegans/', 'title': 'nhr-21 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '5493a0ab-7c40-4b78-b583-14b557d4fdc7', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF006EAP/ 10004937 Kevin White, UChicago b610afbfa25bdc0047534cf430853967 https://www.encodeproject.org/files/ENCFF573JOE/@@download/ENCFF573JOE.bigWig released s3://encode-public/2016/10/21/13a873b4-0077-4c0e-95ce-a05b5796b8e0/ENCFF573JOE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF622XST fastq fastq reads ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 171457628 Michael Snyder, Stanford 543501a04d56bb58a8c78e2a93038b35 https://www.encodeproject.org/files/ENCFF622XST/@@download/ENCFF622XST.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/32e2a7d7-d48d-405c-baff-043d5b72143b/ENCFF622XST.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF704CWS fastq fastq reads ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 174434829 Michael Snyder, Stanford ccbcf081e0837a3d3cbeb791e6efba07 https://www.encodeproject.org/files/ENCFF704CWS/@@download/ENCFF704CWS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0d70251b-7c04-4312-a42a-bc3606d9876c/ENCFF704CWS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF040JSP fastq fastq reads ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 144491106 Michael Snyder, Stanford 252d8d1cf36feb12970b40727115926c https://www.encodeproject.org/files/ENCFF040JSP/@@download/ENCFF040JSP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/66a15507-3636-4922-b676-2ae761db5369/ENCFF040JSP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF585DPB bam bam alignments ce10 ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF622XST/, /files/ENCFF704CWS/, /files/ENCFF040JSP/, /files/ENCFF987UMF/ 618055758 Kevin White, UChicago 4dbca1581e181d7b3689f435edd04721 https://www.encodeproject.org/files/ENCFF585DPB/@@download/ENCFF585DPB.bam released s3://encode-public/2016/10/18/163f0293-7792-408f-b637-78b0d4a3ed15/ENCFF585DPB.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF791RRQ bam bam alignments ce11 ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF622XST/, /files/ENCFF704CWS/, /files/ENCFF040JSP/, /files/ENCFF586MOL/ 618660641 Kevin White, UChicago d67639c9066b797e96abdd4296e9184f https://www.encodeproject.org/files/ENCFF791RRQ/@@download/ENCFF791RRQ.bam released s3://encode-public/2016/10/18/2f29d284-25a7-4687-a5f0-9f4c46d96d63/ENCFF791RRQ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF735GCN bigWig bigWig read-depth normalized signal ce10 ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF585DPB/ 10012026 Kevin White, UChicago 2c28f1bbfea1c28feacd2e694ca1b1bf https://www.encodeproject.org/files/ENCFF735GCN/@@download/ENCFF735GCN.bigWig released s3://encode-public/2016/10/20/738f3d18-d790-4758-b851-551775a7c8e9/ENCFF735GCN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF194DOM bigWig bigWig signal of unique reads ce10 ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF585DPB/ 9972838 Kevin White, UChicago 34a9eba8149bfc901b7b6f6fa3c9333f https://www.encodeproject.org/files/ENCFF194DOM/@@download/ENCFF194DOM.bigWig released s3://encode-public/2016/10/20/aafb8778-ed26-4670-81a3-0e2613c11565/ENCFF194DOM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF810UAD bigWig bigWig read-depth normalized signal ce11 ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF791RRQ/ 10015909 Kevin White, UChicago f5220ebcb3eb5407bb6449694fd871e8 https://www.encodeproject.org/files/ENCFF810UAD/@@download/ENCFF810UAD.bigWig released s3://encode-public/2016/10/21/115f8fa8-2a4b-48f4-9c3a-c0a0d238ef61/ENCFF810UAD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF914WHJ bigWig bigWig signal of unique reads ce11 ENCSR851OBZ Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF791RRQ/ 9972037 Kevin White, UChicago 477617dce4ad8a2ae81455db1fe0de14 https://www.encodeproject.org/files/ENCFF914WHJ/@@download/ENCFF914WHJ.bigWig released s3://encode-public/2016/10/21/91567d8e-a542-46f2-afeb-1b48c69d08cd/ENCFF914WHJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF152CNI tagAlign tagAlign alignments hg19 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF551SJA/, /files/ENCFF834XAP/ 110132273 Anshul Kundaje, Stanford a2dd6a9538ba2b571adbad45db9ae6a1 https://www.encodeproject.org/files/ENCFF152CNI/@@download/ENCFF152CNI.tagAlign.gz archived s3://encode-public/2016/05/02/50ed30e1-1b97-40f5-9daf-640173c5cd14/ENCFF152CNI.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF324TRO tagAlign tagAlign alignments hg19 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF894UPX/, /files/ENCFF278TMY/ 113441227 Anshul Kundaje, Stanford ab5c3b8caf6f723d97d6ea130a5e1e88 https://www.encodeproject.org/files/ENCFF324TRO/@@download/ENCFF324TRO.tagAlign.gz archived s3://encode-public/2016/05/02/42fd8838-9d8e-4689-991c-f4048e3af21f/ENCFF324TRO.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF486CGJ bam bam redacted alignments GRCh38 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF834XAP/, /files/ENCFF551SJA/ 226528115 ENCODE Processing Pipeline 0e37ead8c5be1dba327db8fb6926a422 https://www.encodeproject.org/files/ENCFF486CGJ/@@download/ENCFF486CGJ.bam released s3://encode-public/2018/01/19/5b56d954-a246-4403-aeb0-b20ed7ab5172/ENCFF486CGJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF443OIN bam bam redacted unfiltered alignments GRCh38 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF834XAP/, /files/ENCFF551SJA/ 372756658 ENCODE Processing Pipeline 7c09075a8bbf396c22a15cac75b84ad8 https://www.encodeproject.org/files/ENCFF443OIN/@@download/ENCFF443OIN.bam released s3://encode-public/2018/01/19/c4096bed-f54c-4b82-a9a0-f1d6605a6f36/ENCFF443OIN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF225LIL bam bam redacted unfiltered alignments GRCh38 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF278TMY/, /files/ENCFF643CGH/, /files/ENCFF894UPX/ 411872684 ENCODE Processing Pipeline 86507689b8e09fd763d4f1269852801d https://www.encodeproject.org/files/ENCFF225LIL/@@download/ENCFF225LIL.bam released s3://encode-public/2018/01/19/ca3e9cee-8037-4015-9635-6c915a7515d8/ENCFF225LIL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF335ZPO bam bam redacted alignments GRCh38 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF278TMY/, /files/ENCFF643CGH/, /files/ENCFF894UPX/ 233497991 ENCODE Processing Pipeline 03b8ff22d1f229200f4bd99f39748d07 https://www.encodeproject.org/files/ENCFF335ZPO/@@download/ENCFF335ZPO.bam released s3://encode-public/2018/01/19/60479717-235a-4429-a51e-7fed1234828d/ENCFF335ZPO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF359SCU bam bam redacted unfiltered alignments hg19 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF834XAP/, /files/ENCFF551SJA/ 369532819 ENCODE Processing Pipeline 58d451aba47966efb4f0158fadb6e75f https://www.encodeproject.org/files/ENCFF359SCU/@@download/ENCFF359SCU.bam released s3://encode-public/2018/01/24/f5e38e2f-88a3-45ed-bc98-99d887e605b7/ENCFF359SCU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF615HTE bam bam redacted unfiltered alignments hg19 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF278TMY/, /files/ENCFF807MUK/, /files/ENCFF894UPX/ 408371653 ENCODE Processing Pipeline 630d2f2f1732da9af751758288bcd799 https://www.encodeproject.org/files/ENCFF615HTE/@@download/ENCFF615HTE.bam released s3://encode-public/2018/01/24/2e204d74-c8cd-4378-a698-9d72a732b650/ENCFF615HTE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF216JNU bam bam redacted alignments hg19 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF278TMY/, /files/ENCFF807MUK/, /files/ENCFF894UPX/ 233547701 ENCODE Processing Pipeline 7887c3105151277bd036d7bcd91df3e5 https://www.encodeproject.org/files/ENCFF216JNU/@@download/ENCFF216JNU.bam released s3://encode-public/2018/01/24/a5decbb2-034d-4d79-a8b8-96c54013e88f/ENCFF216JNU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF494VBQ bam bam redacted alignments hg19 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF834XAP/, /files/ENCFF551SJA/ 226569328 ENCODE Processing Pipeline 7f89e2d4afe0de95443cdac7bcfb3d1b https://www.encodeproject.org/files/ENCFF494VBQ/@@download/ENCFF494VBQ.bam released s3://encode-public/2018/01/24/b2f2a309-fd58-41c8-b659-01ce96fc1344/ENCFF494VBQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF942RTL bam bam redacted alignments GRCh38 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF551SJA/, /files/ENCFF834XAP/ 669080233 ENCODE Processing Pipeline 4669c8dc941c8db8e8747f06b0554927 https://www.encodeproject.org/files/ENCFF942RTL/@@download/ENCFF942RTL.bam released s3://encode-public/2021/01/27/1cb61210-196c-40c0-b059-de70ee14d026/ENCFF942RTL.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF947KFE bam bam redacted alignments GRCh38 ENCSR554RPI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000222 mesodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF894UPX/, /files/ENCFF278TMY/ 685971854 ENCODE Processing Pipeline 0c8df080e01c104308c7336be1a3306a https://www.encodeproject.org/files/ENCFF947KFE/@@download/ENCFF947KFE.bam released s3://encode-public/2021/01/27/c64f8d0c-5635-42f3-890b-a0db552d316d/ENCFF947KFE.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF818TFX bam bam unfiltered alignments hg19 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF359FCM/, /files/ENCFF807MUK/ 2489480279 ENCODE Processing Pipeline e6aa3eeb3465f16e25496c8362d25606 https://www.encodeproject.org/files/ENCFF818TFX/@@download/ENCFF818TFX.bam released s3://encode-public/2018/02/21/f078f532-e552-4101-a545-d6a0aadbc1c9/ENCFF818TFX.bam ENCODE3 hg19 archived missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF359FCM fastq fastq reads ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 single-ended 1946727438 Bradley Bernstein, Broad 535891fd865a81c7f4112ea72b0d0ca7 SRA:SRR5339143 https://www.encodeproject.org/files/ENCFF359FCM/@@download/ENCFF359FCM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/02/20/8b2e262b-7cbe-4584-a41c-b733c6017a03/ENCFF359FCM.fastq.gz missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF826JDD fastq fastq reads ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 single-ended 928255024 Bradley Bernstein, Broad 32327f298339d2e6c9dc8e0ffbd7ae2d SRA:SRR5339140 https://www.encodeproject.org/files/ENCFF826JDD/@@download/ENCFF826JDD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/02/20/2e29c418-d81c-4523-9e14-73fd2a4d4cc8/ENCFF826JDD.fastq.gz missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF491TWA bam bam unfiltered alignments GRCh38 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF826JDD/, /files/ENCFF947MSE/, /files/ENCFF110MCL/, /files/ENCFF662WJR/ 2222102913 ENCODE Processing Pipeline 074b772c0bff9cac537886a54f79b2a9 https://www.encodeproject.org/files/ENCFF491TWA/@@download/ENCFF491TWA.bam released s3://encode-public/2020/09/17/d666ea57-6825-4b2e-84af-c7c2a598855d/ENCFF491TWA.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF650SLW bam bam alignments GRCh38 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF826JDD/, /files/ENCFF947MSE/, /files/ENCFF110MCL/, /files/ENCFF662WJR/ 1689077533 ENCODE Processing Pipeline 604402adbb65f3916c8c2b89a4ed7686 https://www.encodeproject.org/files/ENCFF650SLW/@@download/ENCFF650SLW.bam released s3://encode-public/2020/09/17/242a7a21-fb92-4c17-93d6-5612ed43702b/ENCFF650SLW.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF853PAD bam bam alignments hg19 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF359FCM/, /files/ENCFF807MUK/ 1658517970 ENCODE Processing Pipeline 3b3bae9b16eb958b33611cc5e7866552 https://www.encodeproject.org/files/ENCFF853PAD/@@download/ENCFF853PAD.bam released s3://encode-public/2015/12/17/0724e8bb-f6f6-464f-b7ea-2f6ac8733b49/ENCFF853PAD.bam ENCODE3 hg19 archived missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF657IMK bam bam unfiltered alignments GRCh38 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF359FCM/, /files/ENCFF643CGH/ 2501455313 ENCODE Processing Pipeline 2879d77c9c576163577dd50408d6d191 https://www.encodeproject.org/files/ENCFF657IMK/@@download/ENCFF657IMK.bam released s3://encode-public/2016/05/06/4c219f37-6c30-4444-885f-c71039d00990/ENCFF657IMK.bam ENCODE3 GRCh38 archived missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF405YHH bam bam alignments GRCh38 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF359FCM/, /files/ENCFF643CGH/ 1658318337 ENCODE Processing Pipeline 2d9ee96425cd834e4fa82b3ae55eedad https://www.encodeproject.org/files/ENCFF405YHH/@@download/ENCFF405YHH.bam released s3://encode-public/2016/05/06/d513f372-f50e-429b-a030-a1c30cd4de20/ENCFF405YHH.bam ENCODE3 GRCh38 archived missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF947MSE fastq fastq reads ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 76 single-ended 647165407 Bradley Bernstein, Broad c7b15a5e20f1a29dc22a183ce67a519e SRA:SRR5339141 https://www.encodeproject.org/files/ENCFF947MSE/@@download/ENCFF947MSE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/81ac17e5-c193-4ddc-a292-10024e213b49/ENCFF947MSE.fastq.gz missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF662WJR fastq fastq reads ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 76 single-ended 678152545 Bradley Bernstein, Broad 68e2be5726ced51a2158b64709bb766e SRA:SRR5339142 https://www.encodeproject.org/files/ENCFF662WJR/@@download/ENCFF662WJR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/299c1be6-4625-47a7-95ba-a9f8f88d3bbc/ENCFF662WJR.fastq.gz missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF912MQZ bam bam unfiltered alignments GRCh38 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 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sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF662WJR/, /files/ENCFF947MSE/, /files/ENCFF826JDD/, /files/ENCFF643CGH/ 1600169906 ENCODE Processing Pipeline b3b7d0c85b5515d386245a800982f83b https://www.encodeproject.org/files/ENCFF197JML/@@download/ENCFF197JML.bam released s3://encode-public/2016/11/08/cdd6ddf4-0aac-47a0-a39b-5b1bc61adf65/ENCFF197JML.bam ENCODE3 GRCh38 archived missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF739SKR bam bam unfiltered alignments hg19 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF662WJR/, /files/ENCFF807MUK/, /files/ENCFF947MSE/, /files/ENCFF826JDD/ 2270000745 ENCODE Processing Pipeline 08df383738f5595f4310fda947bda662 https://www.encodeproject.org/files/ENCFF739SKR/@@download/ENCFF739SKR.bam released s3://encode-public/2016/11/08/b463478f-77ff-4c6c-a692-9459e1f43769/ENCFF739SKR.bam ENCODE3 hg19 archived missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF382QUP bam bam alignments hg19 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': 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{'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF359FCM/, /files/ENCFF110MCL/ 2425192943 ENCODE Processing Pipeline 0301d8f81acba12c7912ec68a97c7cac https://www.encodeproject.org/files/ENCFF005AAF/@@download/ENCFF005AAF.bam released s3://encode-public/2020/09/17/eae221f1-4dea-49bd-8acb-8fcf04e48e4e/ENCFF005AAF.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF092XYY bam bam alignments GRCh38 ENCSR689ICI Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000681 radial glial cell in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF359FCM/, /files/ENCFF110MCL/ 1810688643 ENCODE Processing Pipeline cec7c55022cfb6e5579c079d11813723 https://www.encodeproject.org/files/ENCFF092XYY/@@download/ENCFF092XYY.bam released s3://encode-public/2020/09/17/aef7d72b-d3f7-49c1-81a0-7d87e458e548/ENCFF092XYY.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, low read length, mixed read lengths, missing biosample characterization, missing genetic modification reagents ENCFF866AZN fastq fastq reads ENCSR266WRF Control ChIP-seq /fly-donors/ENCDO038HYA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43812/'], '@type': ['Target', 'Item'], 'name': 'ey-dmelanogaster', 'label': 'ey', '@id': 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/fly-donors/ENCDO038HYA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43812/'], '@type': ['Target', 'Item'], 'name': 'ey-dmelanogaster', 'label': 'ey', '@id': '/targets/ey-dmelanogaster/', 'title': 'ey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aaa3db78-e60a-43ba-aada-6062cfc810ef', 'status': 'released'} dm3 4 649827 743666 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF102IUS/ 15223574 Kevin White, UChicago a43339c4ce0b2b8547b16ee2f3d37d25 https://www.encodeproject.org/files/ENCFF023RFH/@@download/ENCFF023RFH.bigWig released s3://encode-public/2015/10/05/17c227f0-9e1f-4632-a403-39bbf04cdb88/ENCFF023RFH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF130PMH bigWig bigWig signal of unique reads dm3 ENCSR266WRF Control ChIP-seq /fly-donors/ENCDO038HYA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43812/'], '@type': ['Target', 'Item'], 'name': 'ey-dmelanogaster', 'label': 'ey', '@id': '/targets/ey-dmelanogaster/', 'title': 'ey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aaa3db78-e60a-43ba-aada-6062cfc810ef', 'status': 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ENCFF481JRT bigWig bigWig read-depth normalized signal dm6 ENCSR266WRF Control ChIP-seq /fly-donors/ENCDO038HYA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43812/'], '@type': ['Target', 'Item'], 'name': 'ey-dmelanogaster', 'label': 'ey', '@id': '/targets/ey-dmelanogaster/', 'title': 'ey (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'aaa3db78-e60a-43ba-aada-6062cfc810ef', 'status': 'released'} dm3 4 649827 743666 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF432OOJ/ 17321470 Kevin White, UChicago 57b7bf46b14dcfa2daf850ff6d757911 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https://www.encodeproject.org/files/ENCFF482DJT/@@download/ENCFF482DJT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/7345bb26-e7f0-4d5c-b25d-abbeb48a9e4f/ENCFF482DJT.fastq.gz ENCFF204IVZ bam bam unfiltered alignments GRCh38 ENCSR869KBA Control ChIP-seq /human-donors/ENCDO830KFO/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF870ZQN/, /files/ENCFF482DJT/, /files/ENCFF815BRZ/, /files/ENCFF316TGJ/, /files/ENCFF642DEJ/, /files/ENCFF066NEX/, /files/ENCFF110MCL/, /files/ENCFF201KUK/, /files/ENCFF796JMR/ 3422910113 ENCODE Processing Pipeline f30ef3e1942093cbdb4ad58009e5f138 https://www.encodeproject.org/files/ENCFF204IVZ/@@download/ENCFF204IVZ.bam released s3://encode-public/2021/06/18/04b0037c-fa9a-4139-ad0d-b6291dfffffb/ENCFF204IVZ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF700MUH bam bam alignments GRCh38 ENCSR869KBA Control ChIP-seq /human-donors/ENCDO830KFO/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-06-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF870ZQN/, /files/ENCFF482DJT/, /files/ENCFF815BRZ/, /files/ENCFF316TGJ/, /files/ENCFF642DEJ/, /files/ENCFF066NEX/, /files/ENCFF110MCL/, /files/ENCFF201KUK/, /files/ENCFF796JMR/ 2876330224 ENCODE Processing Pipeline ab90665bda609d67ebdab6202a78d66f https://www.encodeproject.org/files/ENCFF700MUH/@@download/ENCFF700MUH.bam released s3://encode-public/2021/06/18/f4607363-8aac-4fc9-b358-c8fc096c1494/ENCFF700MUH.bam ENCODE4 v1.8.0 GRCh38 released ENCFF896RJH tagAlign tagAlign alignments hg19 ENCSR928GAG Control ChIP-seq /human-donors/ENCDO623LNR/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF549CII/ 72931834 Anshul Kundaje, Stanford 04caf76aa79c47dc2848dda5298ae514 https://www.encodeproject.org/files/ENCFF896RJH/@@download/ENCFF896RJH.tagAlign.gz archived s3://encode-public/2016/02/11/cc966a85-638b-4c43-b083-df7108817113/ENCFF896RJH.tagAlign.gz Lab custom hg19 archived low read length insufficient read depth ENCFF736GFN bam bam redacted unfiltered alignments hg19 ENCSR928GAG Control ChIP-seq /human-donors/ENCDO623LNR/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF549CII/ 190768580 ENCODE Processing Pipeline a595ca0a7dd0c06843ae076876edf9f4 https://www.encodeproject.org/files/ENCFF736GFN/@@download/ENCFF736GFN.bam released s3://encode-public/2018/01/19/1f00e421-1123-4f2a-b071-913bddbcd964/ENCFF736GFN.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF855TNJ bam bam redacted alignments hg19 ENCSR928GAG Control ChIP-seq /human-donors/ENCDO623LNR/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF549CII/ 108958432 ENCODE Processing Pipeline 9cbc28ebf40264fd25d700d6d034c26e https://www.encodeproject.org/files/ENCFF855TNJ/@@download/ENCFF855TNJ.bam released s3://encode-public/2018/01/19/27674249-a8ab-498b-b1f4-a7f65ce623dd/ENCFF855TNJ.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF898HBV bam bam redacted unfiltered alignments GRCh38 ENCSR928GAG Control ChIP-seq /human-donors/ENCDO623LNR/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF549CII/ 192431787 ENCODE Processing Pipeline b15f4f5eab5f223f0803eca098132dae https://www.encodeproject.org/files/ENCFF898HBV/@@download/ENCFF898HBV.bam released s3://encode-public/2018/01/19/59dd0705-dabf-4740-91b2-827b9198afde/ENCFF898HBV.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF217AWR bam bam redacted alignments GRCh38 ENCSR928GAG Control ChIP-seq /human-donors/ENCDO623LNR/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF549CII/ 108957624 ENCODE Processing Pipeline 44d4cd4591d99de3bfcbf4394227f635 https://www.encodeproject.org/files/ENCFF217AWR/@@download/ENCFF217AWR.bam released s3://encode-public/2018/01/19/7a50c013-4c17-42fa-95b9-10fb3684e380/ENCFF217AWR.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF415AMR bam bam redacted alignments GRCh38 ENCSR928GAG Control ChIP-seq /human-donors/ENCDO623LNR/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF549CII/ 450762517 ENCODE Processing Pipeline 95856b5cfffca1bd183f4b6b1be50c7d https://www.encodeproject.org/files/ENCFF415AMR/@@download/ENCFF415AMR.bam released s3://encode-public/2021/01/27/076d72ac-18d8-4938-8c98-e5a395c4a70e/ENCFF415AMR.bam ENCODE4 v1.7.0 GRCh38 released low read length insufficient read depth ENCFF421NSE fastq fastq reads ENCSR041BTW Control ChIP-seq /worm-donors/ENCDO889WQV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179557/'], '@type': ['Target', 'Item'], 'name': 'mxl-1-celegans', 'label': 'mxl-1', '@id': '/targets/mxl-1-celegans/', 'title': 'mxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'fa8c48f4-ab29-4929-8e51-53040edd7e21', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 588078779 Kevin White, UChicago 014dbc2166402ea16426156fb77d9883 https://www.encodeproject.org/files/ENCFF421NSE/@@download/ENCFF421NSE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/f51597a6-0b88-4fdb-a3ad-dbdd63e07af2/ENCFF421NSE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF860OTQ bam bam alignments ce10 ENCSR041BTW Control ChIP-seq /worm-donors/ENCDO889WQV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179557/'], '@type': ['Target', 'Item'], 'name': 'mxl-1-celegans', 'label': 'mxl-1', '@id': '/targets/mxl-1-celegans/', 'title': 'mxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'fa8c48f4-ab29-4929-8e51-53040edd7e21', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF421NSE/ 697351350 Kevin White, UChicago 7466c43e1687478ca0273e555a4cf34b https://www.encodeproject.org/files/ENCFF860OTQ/@@download/ENCFF860OTQ.bam released s3://encode-public/2015/08/07/6c389f6b-e4d8-436a-9117-8e330c9b62ed/ENCFF860OTQ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF145TVH bigWig bigWig signal of unique reads ce10 ENCSR041BTW Control ChIP-seq /worm-donors/ENCDO889WQV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179557/'], '@type': ['Target', 'Item'], 'name': 'mxl-1-celegans', 'label': 'mxl-1', '@id': '/targets/mxl-1-celegans/', 'title': 'mxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'fa8c48f4-ab29-4929-8e51-53040edd7e21', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF860OTQ/ 9950187 Kevin White, UChicago a047caaa16e611578d0fc6aa0d148900 https://www.encodeproject.org/files/ENCFF145TVH/@@download/ENCFF145TVH.bigWig released s3://encode-public/2015/10/02/aa06d15f-173b-4183-a3a2-9d1c9976c6f3/ENCFF145TVH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF575JWV bigWig bigWig read-depth normalized signal ce10 ENCSR041BTW Control ChIP-seq /worm-donors/ENCDO889WQV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179557/'], '@type': ['Target', 'Item'], 'name': 'mxl-1-celegans', 'label': 'mxl-1', '@id': '/targets/mxl-1-celegans/', 'title': 'mxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'fa8c48f4-ab29-4929-8e51-53040edd7e21', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF860OTQ/ 9971178 Kevin White, UChicago 311d71f8375fcb0efa07a2c0319c9b06 https://www.encodeproject.org/files/ENCFF575JWV/@@download/ENCFF575JWV.bigWig released s3://encode-public/2015/10/02/a78fe73a-5822-413b-a54b-685316837db2/ENCFF575JWV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF958QIP bam bam alignments ce11 ENCSR041BTW Control ChIP-seq /worm-donors/ENCDO889WQV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179557/'], '@type': ['Target', 'Item'], 'name': 'mxl-1-celegans', 'label': 'mxl-1', '@id': '/targets/mxl-1-celegans/', 'title': 'mxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'fa8c48f4-ab29-4929-8e51-53040edd7e21', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF421NSE/ 697899647 Kevin White, UChicago 49b27eb252cff037d6b7c9e9e652e925 https://www.encodeproject.org/files/ENCFF958QIP/@@download/ENCFF958QIP.bam released s3://encode-public/2016/01/19/f3cbb9f3-8ae1-4f50-8902-0495f61be7b7/ENCFF958QIP.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF417DLK bigWig bigWig signal of unique reads ce11 ENCSR041BTW Control ChIP-seq /worm-donors/ENCDO889WQV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179557/'], '@type': ['Target', 'Item'], 'name': 'mxl-1-celegans', 'label': 'mxl-1', '@id': '/targets/mxl-1-celegans/', 'title': 'mxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'fa8c48f4-ab29-4929-8e51-53040edd7e21', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF958QIP/ 9947284 Kevin White, UChicago 306c0d811eba806f6d281c63c8c423ac https://www.encodeproject.org/files/ENCFF417DLK/@@download/ENCFF417DLK.bigWig released s3://encode-public/2016/02/03/91ada50d-3c70-40b7-95da-1df1477330e1/ENCFF417DLK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF244YMK bigWig bigWig read-depth normalized signal ce11 ENCSR041BTW Control ChIP-seq /worm-donors/ENCDO889WQV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179557/'], '@type': ['Target', 'Item'], 'name': 'mxl-1-celegans', 'label': 'mxl-1', '@id': '/targets/mxl-1-celegans/', 'title': 'mxl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'fa8c48f4-ab29-4929-8e51-53040edd7e21', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF958QIP/ 9963394 Kevin White, UChicago 1d278ad3c679fdd222816b68fbca202d https://www.encodeproject.org/files/ENCFF244YMK/@@download/ENCFF244YMK.bigWig released s3://encode-public/2016/02/03/c2b9c4d6-57aa-4e44-8e47-d03398114bb7/ENCFF244YMK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF972NVS fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 3 3_1 37 single-ended 980756821 Bradley Bernstein, Broad 82c3390dedf5af6586a6efd08490b8b9 https://www.encodeproject.org/files/ENCFF972NVS/@@download/ENCFF972NVS.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2014/10/25/27138871-f8f7-474f-9aca-ec385442b185/ENCFF972NVS.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF802ZSZ fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 36 single-ended 1798871329 Bradley Bernstein, Broad 88f8fa680e35d0fc299fdaa60669f344 SRA:SRR5339051 https://www.encodeproject.org/files/ENCFF802ZSZ/@@download/ENCFF802ZSZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/25/c160837e-8ea8-4645-999c-bd4fa2fedb84/ENCFF802ZSZ.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF348JFX bam bam unfiltered alignments hg19 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 3 3_1 37 /files/ENCFF972NVS/, /files/ENCFF807MUK/ 1386244087 ENCODE Processing Pipeline 85504f05163aa4893caa8225a0bf2383 https://www.encodeproject.org/files/ENCFF348JFX/@@download/ENCFF348JFX.bam released s3://encode-public/2018/03/28/5984885f-cf9c-4b5d-b4e8-93c0162cdc3c/ENCFF348JFX.bam mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF690VPV bam bam alignments hg19 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 3 3_1 37 /files/ENCFF972NVS/, /files/ENCFF807MUK/ 1014325369 ENCODE Processing Pipeline b58a427f85517725f348f6275db6e983 https://www.encodeproject.org/files/ENCFF690VPV/@@download/ENCFF690VPV.bam archived s3://encode-public/2015/10/28/d00ebb3a-3dc4-4484-95fe-6c6ba99f58ba/ENCFF690VPV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF801RHE bam bam unfiltered alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 3 3_1 37 /files/ENCFF972NVS/, /files/ENCFF643CGH/ 1392596384 ENCODE Processing Pipeline e527b64e1e440ec264f433836ca787a2 https://www.encodeproject.org/files/ENCFF801RHE/@@download/ENCFF801RHE.bam archived s3://encode-public/2016/05/06/f0d8dc55-6686-491e-a241-da231d96589e/ENCFF801RHE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF401WQR bam bam alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 3 3_1 37 /files/ENCFF972NVS/, /files/ENCFF643CGH/ 1013839795 ENCODE Processing Pipeline 3111b89fc2ecc08d185d4acadb27e722 https://www.encodeproject.org/files/ENCFF401WQR/@@download/ENCFF401WQR.bam archived s3://encode-public/2016/05/06/a0975ffd-68ab-4ca6-ae88-78d62d1edec7/ENCFF401WQR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF965KVJ fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 76 single-ended 1290011338 Bradley Bernstein, Broad 8304b7436ef62c3ae3bc4a3f343890fb SRA:SRR5339052 https://www.encodeproject.org/files/ENCFF965KVJ/@@download/ENCFF965KVJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/b9d3d43c-f1d9-4a1f-b5a5-47db2606b1f0/ENCFF965KVJ.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF775ENL fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 single-ended 439322647 Bradley Bernstein, Broad eef1475fc66559429038bd47cf4c11e0 SRA:SRR5339047 https://www.encodeproject.org/files/ENCFF775ENL/@@download/ENCFF775ENL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/5b41aa31-aebc-4199-9af1-53c8ce677d48/ENCFF775ENL.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF418LZN fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 single-ended 454405763 Bradley Bernstein, Broad 1ac6da43f3f930d00c6803c2db0075da SRA:SRR5339048 https://www.encodeproject.org/files/ENCFF418LZN/@@download/ENCFF418LZN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/650855f1-d27a-478d-bd81-15b6baaac412/ENCFF418LZN.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF706DCA fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 single-ended 455149470 Bradley Bernstein, Broad 9710796d11c5221c634026b09eaf5005 SRA:SRR5339049 https://www.encodeproject.org/files/ENCFF706DCA/@@download/ENCFF706DCA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/6f8505d7-69aa-4c43-9095-2cc1d8e1c8b3/ENCFF706DCA.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF753ZNI fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 single-ended 464091198 Bradley Bernstein, Broad a4792a51f0a7ee2291f9c05e77dc004b SRA:SRR5339050 https://www.encodeproject.org/files/ENCFF753ZNI/@@download/ENCFF753ZNI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/70190311-6b30-4e0c-8077-40a462bca3ae/ENCFF753ZNI.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF630WNF fastq fastq reads ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 76 single-ended 1304621655 Bradley Bernstein, Broad 1cb1fb94d1d57e7af1942ca2d0f3ee80 SRA:SRR5339053 https://www.encodeproject.org/files/ENCFF630WNF/@@download/ENCFF630WNF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/d7483ceb-003d-4f4d-b025-bbf736ad41cb/ENCFF630WNF.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF871BGG bam bam alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 /files/ENCFF418LZN/, /files/ENCFF753ZNI/, /files/ENCFF706DCA/, /files/ENCFF775ENL/, /files/ENCFF643CGH/ 1687321098 ENCODE Processing Pipeline 52d7cc10856c44ccae483f8e0e269f21 https://www.encodeproject.org/files/ENCFF871BGG/@@download/ENCFF871BGG.bam released s3://encode-public/2016/10/26/d6fb07d9-4fb3-4340-9a46-fe2adecf1646/ENCFF871BGG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF928LUL bam bam unfiltered alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 36 /files/ENCFF802ZSZ/, /files/ENCFF643CGH/, /files/ENCFF630WNF/, /files/ENCFF965KVJ/ 3897004894 ENCODE Processing Pipeline 79448a4ac8694e1070d7e540c5659f05 https://www.encodeproject.org/files/ENCFF928LUL/@@download/ENCFF928LUL.bam released s3://encode-public/2016/10/26/1680bd77-d983-4929-937e-de4416c08ee6/ENCFF928LUL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF242LBR bam bam unfiltered alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 /files/ENCFF418LZN/, /files/ENCFF753ZNI/, /files/ENCFF706DCA/, /files/ENCFF775ENL/, /files/ENCFF643CGH/ 2367971032 ENCODE Processing Pipeline 1c4c9b6436d0a63c4026674061c05b62 https://www.encodeproject.org/files/ENCFF242LBR/@@download/ENCFF242LBR.bam released s3://encode-public/2016/10/26/ff6ff607-5fb9-4c17-bc55-ad34946e1c86/ENCFF242LBR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF552AOU bam bam alignments hg19 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF418LZN/, /files/ENCFF753ZNI/, /files/ENCFF706DCA/, /files/ENCFF775ENL/ 1687838701 ENCODE Processing Pipeline 058ed397c036f67cc22e5cf3c824cc59 https://www.encodeproject.org/files/ENCFF552AOU/@@download/ENCFF552AOU.bam released s3://encode-public/2016/10/26/02b8461e-dd27-44f0-88c3-3f0d726ef1ff/ENCFF552AOU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF428FBO bam bam unfiltered alignments hg19 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF418LZN/, /files/ENCFF753ZNI/, /files/ENCFF706DCA/, /files/ENCFF775ENL/ 2353632579 ENCODE Processing Pipeline 83336957c1d4973684ec48388d38ebd2 https://www.encodeproject.org/files/ENCFF428FBO/@@download/ENCFF428FBO.bam released s3://encode-public/2016/10/26/2b12109c-91d8-4ecd-b72f-3696228765e6/ENCFF428FBO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF938OPX bam bam alignments hg19 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 36 /files/ENCFF802ZSZ/, /files/ENCFF807MUK/, /files/ENCFF630WNF/, /files/ENCFF965KVJ/ 2198856271 ENCODE Processing Pipeline 6dc499bf964c5314b0d6189ed30072ae https://www.encodeproject.org/files/ENCFF938OPX/@@download/ENCFF938OPX.bam released s3://encode-public/2016/10/26/d7a3a23e-953e-4e45-849f-8f3b0272c725/ENCFF938OPX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF614VVX bam bam unfiltered alignments hg19 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 36 /files/ENCFF802ZSZ/, /files/ENCFF807MUK/, /files/ENCFF630WNF/, /files/ENCFF965KVJ/ 3874570398 ENCODE Processing Pipeline a125b5b1b14d89f6ffea0f360e2944b3 https://www.encodeproject.org/files/ENCFF614VVX/@@download/ENCFF614VVX.bam released s3://encode-public/2016/10/26/9fc8cd49-a886-403b-8827-7eb3f24ad327/ENCFF614VVX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF711NHN bam bam alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 36 /files/ENCFF802ZSZ/, /files/ENCFF643CGH/, /files/ENCFF630WNF/, /files/ENCFF965KVJ/ 2197952249 ENCODE Processing Pipeline fb5edae48d131d732ffdb6032a883cc8 https://www.encodeproject.org/files/ENCFF711NHN/@@download/ENCFF711NHN.bam released s3://encode-public/2016/10/26/990554ce-b406-442c-9ab0-a7a8754eceda/ENCFF711NHN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF619HAX bam bam alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 /files/ENCFF706DCA/, /files/ENCFF418LZN/, /files/ENCFF753ZNI/, /files/ENCFF110MCL/, /files/ENCFF775ENL/ 1821186948 ENCODE Processing Pipeline 1c084249d69086436108d1b19eb01deb https://www.encodeproject.org/files/ENCFF619HAX/@@download/ENCFF619HAX.bam released s3://encode-public/2020/09/17/f70510b4-1ba3-4a3e-9ce2-45f272cf25a2/ENCFF619HAX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF743PNS bam bam alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 36 /files/ENCFF802ZSZ/, /files/ENCFF110MCL/, /files/ENCFF630WNF/, /files/ENCFF965KVJ/ 2383061772 ENCODE Processing Pipeline 81d089f00e8fd1f5a27b6a144d3f4afa https://www.encodeproject.org/files/ENCFF743PNS/@@download/ENCFF743PNS.bam released s3://encode-public/2020/09/17/3b1ae6b6-d1af-4212-8423-8098ce5ada67/ENCFF743PNS.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF629KCB bam bam unfiltered alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 1 1_1 36 /files/ENCFF706DCA/, /files/ENCFF418LZN/, /files/ENCFF753ZNI/, /files/ENCFF110MCL/, /files/ENCFF775ENL/ 2292435160 ENCODE Processing Pipeline 38640103694826d034bf2ad25ab77837 https://www.encodeproject.org/files/ENCFF629KCB/@@download/ENCFF629KCB.bam released s3://encode-public/2020/09/17/b50206bd-9a8d-40a5-afa6-b931ca0ae003/ENCFF629KCB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF951VVU bam bam unfiltered alignments GRCh38 ENCSR648HLP Control ChIP-seq /human-donors/ENCDO732PDS/ EFO:0007112 Loucy cell line Homo sapiens DNA 2014-11-20 ENCODE see document 200-600 2 2_1 36 /files/ENCFF802ZSZ/, /files/ENCFF110MCL/, /files/ENCFF630WNF/, /files/ENCFF965KVJ/ 3813866302 ENCODE Processing Pipeline 64837ed4052c24eff56d32488f5222d9 https://www.encodeproject.org/files/ENCFF951VVU/@@download/ENCFF951VVU.bam released s3://encode-public/2020/09/17/5156d4ab-d0d4-4073-a7f4-9ce5258709d3/ENCFF951VVU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF425WHV fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 346733548 Bradley Bernstein, Broad c6ae96c095162db729cf7842c536ef80 https://www.encodeproject.org/files/ENCFF425WHV/@@download/ENCFF425WHV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/57e6da57-a1d7-4215-9d42-e58e95b1fede/ENCFF425WHV.fastq.gz ENCFF736ZHF fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 339578797 Bradley Bernstein, Broad 550a63b4daccec3b5a502773eaf52da6 https://www.encodeproject.org/files/ENCFF736ZHF/@@download/ENCFF736ZHF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/59544fd5-e9dc-4b07-ac15-98b67c47ac91/ENCFF736ZHF.fastq.gz ENCFF576GAE fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 344270744 Bradley Bernstein, Broad 56e9b98e3c334defff3541ca670de3d9 https://www.encodeproject.org/files/ENCFF576GAE/@@download/ENCFF576GAE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/87c471ec-97e9-4e3b-ac05-00e16426e42f/ENCFF576GAE.fastq.gz ENCFF329LDM fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 337704644 Bradley Bernstein, Broad 59d267384896bbde082743717f4af7c1 https://www.encodeproject.org/files/ENCFF329LDM/@@download/ENCFF329LDM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f85ef6c9-4570-46ec-a3e2-e580ca4c925e/ENCFF329LDM.fastq.gz ENCFF342HXJ fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 431374664 Bradley Bernstein, Broad 7f88ca47b802bc242d0d8acaf8c3d075 https://www.encodeproject.org/files/ENCFF342HXJ/@@download/ENCFF342HXJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/2107f3cc-9c55-4bbf-84fd-eb0505d02114/ENCFF342HXJ.fastq.gz ENCFF236BUQ fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 431564467 Bradley Bernstein, Broad a47502adf74779c2755945757e26cad6 https://www.encodeproject.org/files/ENCFF236BUQ/@@download/ENCFF236BUQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e70d7425-edb6-49b8-81eb-d87745134275/ENCFF236BUQ.fastq.gz ENCFF865ALI fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 426170235 Bradley Bernstein, Broad bd45387b9f47d16504abec5ef1f36932 https://www.encodeproject.org/files/ENCFF865ALI/@@download/ENCFF865ALI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/43cc60e6-8bd2-4cc5-bc2e-bb6f5adbf330/ENCFF865ALI.fastq.gz ENCFF652KPP fastq fastq reads ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 424569808 Bradley Bernstein, Broad 21bc7e693b1f24e6c135f02e339f014c https://www.encodeproject.org/files/ENCFF652KPP/@@download/ENCFF652KPP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/9e53a6fe-5bf3-4ed5-8495-bd29c4112fbc/ENCFF652KPP.fastq.gz ENCFF990KHY bam bam unfiltered alignments GRCh38 ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF425WHV/, /files/ENCFF342HXJ/, /files/ENCFF652KPP/, /files/ENCFF329LDM/, /files/ENCFF576GAE/, /files/ENCFF236BUQ/, /files/ENCFF865ALI/, /files/ENCFF736ZHF/ 3066533093 ENCODE Processing Pipeline 7d9dc6bb1d1138ff500df3111ff478ad https://www.encodeproject.org/files/ENCFF990KHY/@@download/ENCFF990KHY.bam released s3://encode-public/2021/09/15/4eebf0d9-ad5a-407f-9b34-e1517e295ed1/ENCFF990KHY.bam ENCODE4 v1.8.0 GRCh38 released ENCFF865WFN bam bam alignments GRCh38 ENCSR105CRB Control ChIP-seq /human-donors/ENCDO877NVF/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF425WHV/, /files/ENCFF342HXJ/, /files/ENCFF652KPP/, /files/ENCFF329LDM/, /files/ENCFF576GAE/, /files/ENCFF236BUQ/, /files/ENCFF865ALI/, /files/ENCFF736ZHF/ 2581914472 ENCODE Processing Pipeline f34668a852b7876dabf3dae20c24467c https://www.encodeproject.org/files/ENCFF865WFN/@@download/ENCFF865WFN.bam released s3://encode-public/2021/09/15/964f166e-7ce9-4e52-8307-63fb110fb3e3/ENCFF865WFN.bam ENCODE4 v1.8.0 GRCh38 released ENCFF512WLX fastq fastq reads ENCSR058URE Control ChIP-seq /worm-donors/ENCDO364DRZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180833/'], '@type': ['Target', 'Item'], 'name': 'egl-13-celegans', 'label': 'egl-13', '@id': '/targets/egl-13-celegans/', 'title': 'egl-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52ca2d46-ce3f-4493-87f5-f34922ef34a6', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 622975091 Kevin White, UChicago 8b296f282f25c771aff8438699eadf0f https://www.encodeproject.org/files/ENCFF512WLX/@@download/ENCFF512WLX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/27265353-ff4b-4508-a1d2-77a30736dcd0/ENCFF512WLX.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF392TLT bam bam alignments ce10 ENCSR058URE Control ChIP-seq /worm-donors/ENCDO364DRZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180833/'], '@type': ['Target', 'Item'], 'name': 'egl-13-celegans', 'label': 'egl-13', '@id': '/targets/egl-13-celegans/', 'title': 'egl-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52ca2d46-ce3f-4493-87f5-f34922ef34a6', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF512WLX/ 877710367 Kevin White, UChicago c54894b69f78301185bd59d8cbef90ee https://www.encodeproject.org/files/ENCFF392TLT/@@download/ENCFF392TLT.bam released s3://encode-public/2015/08/19/2a38647f-3295-4a83-8266-d6912af0598c/ENCFF392TLT.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF356DPB bigWig bigWig signal of unique reads ce10 ENCSR058URE Control ChIP-seq /worm-donors/ENCDO364DRZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180833/'], '@type': ['Target', 'Item'], 'name': 'egl-13-celegans', 'label': 'egl-13', '@id': '/targets/egl-13-celegans/', 'title': 'egl-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52ca2d46-ce3f-4493-87f5-f34922ef34a6', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF392TLT/ 9989574 Kevin White, UChicago eb4aab8c208b76db8dbc0f98bb14be53 https://www.encodeproject.org/files/ENCFF356DPB/@@download/ENCFF356DPB.bigWig released s3://encode-public/2015/10/02/066abdb3-9a42-4505-ba1f-dd72e2e0b993/ENCFF356DPB.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF573LLU bigWig bigWig read-depth normalized signal ce10 ENCSR058URE Control ChIP-seq /worm-donors/ENCDO364DRZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180833/'], '@type': ['Target', 'Item'], 'name': 'egl-13-celegans', 'label': 'egl-13', '@id': '/targets/egl-13-celegans/', 'title': 'egl-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52ca2d46-ce3f-4493-87f5-f34922ef34a6', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF392TLT/ 9988712 Kevin White, UChicago 16f446de54cf68161c00a264b4b3991a https://www.encodeproject.org/files/ENCFF573LLU/@@download/ENCFF573LLU.bigWig released s3://encode-public/2015/10/02/22d80687-a2eb-45a7-a1a9-a15e2152f7bb/ENCFF573LLU.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF873JOB bam bam alignments ce11 ENCSR058URE Control ChIP-seq /worm-donors/ENCDO364DRZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180833/'], '@type': ['Target', 'Item'], 'name': 'egl-13-celegans', 'label': 'egl-13', '@id': '/targets/egl-13-celegans/', 'title': 'egl-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52ca2d46-ce3f-4493-87f5-f34922ef34a6', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF512WLX/ 878448594 Kevin White, UChicago 5fb7728685724a871a5ea4d8c050e78d https://www.encodeproject.org/files/ENCFF873JOB/@@download/ENCFF873JOB.bam released s3://encode-public/2016/01/20/3e934026-3e55-40ba-a38d-d93c7d000009/ENCFF873JOB.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF592CRB bigWig bigWig signal of unique reads ce11 ENCSR058URE Control ChIP-seq /worm-donors/ENCDO364DRZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180833/'], '@type': ['Target', 'Item'], 'name': 'egl-13-celegans', 'label': 'egl-13', '@id': '/targets/egl-13-celegans/', 'title': 'egl-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52ca2d46-ce3f-4493-87f5-f34922ef34a6', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF873JOB/ 9979679 Kevin White, UChicago e2c652a71314daf644ca92d49a13a6c9 https://www.encodeproject.org/files/ENCFF592CRB/@@download/ENCFF592CRB.bigWig released s3://encode-public/2016/02/03/4927b64a-f660-42d6-b567-85c06bac0d02/ENCFF592CRB.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF157OQC bigWig bigWig read-depth normalized signal ce11 ENCSR058URE Control ChIP-seq /worm-donors/ENCDO364DRZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180833/'], '@type': ['Target', 'Item'], 'name': 'egl-13-celegans', 'label': 'egl-13', '@id': '/targets/egl-13-celegans/', 'title': 'egl-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '52ca2d46-ce3f-4493-87f5-f34922ef34a6', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF873JOB/ 9980715 Kevin White, UChicago bfa72f1489e5980b421fe6a56e4ab225 https://www.encodeproject.org/files/ENCFF157OQC/@@download/ENCFF157OQC.bigWig released s3://encode-public/2016/02/03/f2ebad56-dfa1-4a13-a54a-5f9c6ede3e14/ENCFF157OQC.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF747EYO fastq fastq reads ENCSR055WPE Control ChIP-seq /worm-donors/ENCDO804PJN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 819038857 Kevin White, UChicago 34b966c2bd1bb063afb3a7ef167048c8 https://www.encodeproject.org/files/ENCFF747EYO/@@download/ENCFF747EYO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/f960c30c-b958-4204-9e72-00ade87a0346/ENCFF747EYO.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF701GLX bam bam alignments ce10 ENCSR055WPE Control ChIP-seq /worm-donors/ENCDO804PJN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF747EYO/ 1180834231 Kevin White, UChicago 6908a9802d80ccdf0d399c904b1ede97 https://www.encodeproject.org/files/ENCFF701GLX/@@download/ENCFF701GLX.bam released s3://encode-public/2015/08/07/eb660b80-20b7-4f60-8a12-667f6862de02/ENCFF701GLX.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF174UKF bigWig bigWig read-depth normalized signal ce10 ENCSR055WPE Control ChIP-seq /worm-donors/ENCDO804PJN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF701GLX/ 10029832 Kevin White, UChicago 9c56aec724cad602e8e5c43a0b623328 https://www.encodeproject.org/files/ENCFF174UKF/@@download/ENCFF174UKF.bigWig released s3://encode-public/2015/10/02/74078291-10e3-4804-943d-27d04eb0a248/ENCFF174UKF.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF889QRB bigWig bigWig signal of unique reads ce10 ENCSR055WPE Control ChIP-seq /worm-donors/ENCDO804PJN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF701GLX/ 10036430 Kevin White, UChicago 4bb6cfefc83a69d22ce9b8f2c7613723 https://www.encodeproject.org/files/ENCFF889QRB/@@download/ENCFF889QRB.bigWig released s3://encode-public/2015/10/02/414cba00-7f34-45e7-8e17-57bc729a27b0/ENCFF889QRB.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF460FIW bam bam alignments ce11 ENCSR055WPE Control ChIP-seq /worm-donors/ENCDO804PJN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF747EYO/ 1181884356 Kevin White, UChicago 565077cd498a94289dfeec1b52b73b80 https://www.encodeproject.org/files/ENCFF460FIW/@@download/ENCFF460FIW.bam released s3://encode-public/2016/01/20/5331c93a-5010-444f-91ba-ad3d5170680b/ENCFF460FIW.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF009PHA bigWig bigWig signal of unique reads ce11 ENCSR055WPE Control ChIP-seq /worm-donors/ENCDO804PJN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF460FIW/ 10033723 Kevin White, UChicago 50d586aa9da9002a87eb2db7682b130b https://www.encodeproject.org/files/ENCFF009PHA/@@download/ENCFF009PHA.bigWig released s3://encode-public/2016/02/03/fa298896-9fcf-4365-b3df-f42088decca8/ENCFF009PHA.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF964CLH bigWig bigWig read-depth normalized signal ce11 ENCSR055WPE Control ChIP-seq /worm-donors/ENCDO804PJN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF460FIW/ 10038087 Kevin White, UChicago 4c67a9f10e203749727b8003473d0acf https://www.encodeproject.org/files/ENCFF964CLH/@@download/ENCFF964CLH.bigWig released s3://encode-public/2016/02/03/1374d3b8-0d66-45a2-b92b-74488d04c8bb/ENCFF964CLH.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, moderate library complexity, mild to moderate bottlenecking ENCFF439BRS tagAlign tagAlign alignments hg19 ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF394NUE/ 202053169 Anshul Kundaje, Stanford 9da91d3e38bd32958355c1f8e36049c0 https://www.encodeproject.org/files/ENCFF439BRS/@@download/ENCFF439BRS.tagAlign.gz archived s3://encode-public/2016/05/02/b831273f-d5e1-4085-bdc8-f2fee58b3070/ENCFF439BRS.tagAlign.gz Lab custom hg19 archived low read length ENCFF394NUE fastq fastq reads ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1572451518 Zhiping Weng, UMass faad39f780a1b8dba91d792c62b59a39 SRA:SRR1067093 https://www.encodeproject.org/files/ENCFF394NUE/@@download/ENCFF394NUE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/b96ffeb7-0f83-4419-92dc-f08812e4ef76/ENCFF394NUE.fastq.gz low read length ENCFF703WUT bam bam unfiltered alignments hg19 ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF394NUE/ 1821661094 ENCODE Processing Pipeline 43ac1e5bee12a3b8c84c1192603ba8e5 https://www.encodeproject.org/files/ENCFF703WUT/@@download/ENCFF703WUT.bam released s3://encode-public/2016/12/19/9988be58-263a-4b9d-955e-f40ca4616695/ENCFF703WUT.bam ENCODE3 hg19 archived low read length ENCFF839EAG bam bam unfiltered alignments GRCh38 ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF394NUE/ 1832103726 ENCODE Processing Pipeline d834abf8c991b2caf27c5eca938ef151 https://www.encodeproject.org/files/ENCFF839EAG/@@download/ENCFF839EAG.bam released s3://encode-public/2016/12/19/97445791-1749-4eac-a4b3-44dce5f0e2c8/ENCFF839EAG.bam ENCODE3 GRCh38 archived low read length ENCFF973PGG bam bam alignments hg19 ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF394NUE/ 1300169642 ENCODE Processing Pipeline a1cd8a79d25b456b42d7d80d3e318043 https://www.encodeproject.org/files/ENCFF973PGG/@@download/ENCFF973PGG.bam released s3://encode-public/2016/12/19/b5673281-2627-46e8-a9b6-0b3ebf4f5af1/ENCFF973PGG.bam ENCODE3 hg19 archived low read length ENCFF372EWL bam bam alignments GRCh38 ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF394NUE/ 1299679151 ENCODE Processing Pipeline b71400d124b8161f142af9d7c386c219 https://www.encodeproject.org/files/ENCFF372EWL/@@download/ENCFF372EWL.bam released s3://encode-public/2016/12/19/efe4e5d6-735b-4be4-aea3-08b38ca974c3/ENCFF372EWL.bam ENCODE3 GRCh38 archived low read length ENCFF981BVD bam bam unfiltered alignments GRCh38 ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF394NUE/ 1788629451 ENCODE Processing Pipeline c0ea0640a8aba727c6d5f644a24dd4a1 https://www.encodeproject.org/files/ENCFF981BVD/@@download/ENCFF981BVD.bam released s3://encode-public/2020/10/08/0a4d0180-479e-4829-a9e1-10499a92129f/ENCFF981BVD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF083ZLG bam bam alignments GRCh38 ENCSR636FGN Control ChIP-seq /human-donors/ENCDO741IWK/ EFO:0007083 HUES48 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF394NUE/ 1406675833 ENCODE Processing Pipeline ccf269083d169baad294f2967e594c55 https://www.encodeproject.org/files/ENCFF083ZLG/@@download/ENCFF083ZLG.bam released s3://encode-public/2020/10/08/d00e1dac-8f3a-44e2-87e9-8ae4eb4503d5/ENCFF083ZLG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF441YGX fastq fastq reads ENCSR856TZB Control ChIP-seq /human-donors/ENCDO642MQK/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1369255899 Zhiping Weng, UMass 0a3218e6edd3e9fd747467b53ddc5477 SRA:SRR1067498 https://www.encodeproject.org/files/ENCFF441YGX/@@download/ENCFF441YGX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/22/a75bf84d-9bcb-44d4-bc7d-d74dfb7b7cd4/ENCFF441YGX.fastq.gz low read length ENCFF830EHU bam bam unfiltered alignments GRCh38 ENCSR856TZB Control ChIP-seq /human-donors/ENCDO642MQK/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF441YGX/ 1637831072 ENCODE Processing Pipeline 2ea1639f51bc3b3ab32b14b2ef7fbde3 https://www.encodeproject.org/files/ENCFF830EHU/@@download/ENCFF830EHU.bam released s3://encode-public/2016/12/19/5b9dd4c2-d985-431c-a02f-a4fd5f229489/ENCFF830EHU.bam ENCODE3 GRCh38 archived low read length ENCFF516RLS bam bam unfiltered alignments hg19 ENCSR856TZB Control ChIP-seq /human-donors/ENCDO642MQK/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF441YGX/ 1628627621 ENCODE Processing Pipeline 6af0f83cec659d292aa38399d1aa45d1 https://www.encodeproject.org/files/ENCFF516RLS/@@download/ENCFF516RLS.bam released s3://encode-public/2016/12/19/9564adb4-6a6a-4966-901f-5432dcd3ac78/ENCFF516RLS.bam ENCODE3 hg19 archived low read length ENCFF162UZZ bam bam alignments GRCh38 ENCSR856TZB Control ChIP-seq /human-donors/ENCDO642MQK/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF441YGX/ 1093028687 ENCODE Processing Pipeline e003d7493ee1e38f0ce4aacc14554ff7 https://www.encodeproject.org/files/ENCFF162UZZ/@@download/ENCFF162UZZ.bam released s3://encode-public/2016/12/19/5048a5ad-d2d8-4c9f-a8aa-bd0bada26159/ENCFF162UZZ.bam ENCODE3 GRCh38 archived low read length ENCFF261CPJ bam bam alignments hg19 ENCSR856TZB Control ChIP-seq /human-donors/ENCDO642MQK/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF441YGX/ 1092959381 ENCODE Processing Pipeline 2a50717a0947e77cf1fd9b99de22378f https://www.encodeproject.org/files/ENCFF261CPJ/@@download/ENCFF261CPJ.bam released s3://encode-public/2016/12/19/18f47e0f-1c6e-49e9-87c2-b097a68ef6f4/ENCFF261CPJ.bam ENCODE3 hg19 archived low read length ENCFF820NZF bam bam unfiltered alignments GRCh38 ENCSR856TZB Control ChIP-seq /human-donors/ENCDO642MQK/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF441YGX/, /files/ENCFF110MCL/ 1592814950 ENCODE Processing Pipeline b15e9395a2008ee9d3aecbf5d039e791 https://www.encodeproject.org/files/ENCFF820NZF/@@download/ENCFF820NZF.bam released s3://encode-public/2020/10/08/a893e78b-e538-4ca9-a226-735043f73866/ENCFF820NZF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF332TZO bam bam alignments GRCh38 ENCSR856TZB Control ChIP-seq /human-donors/ENCDO642MQK/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF441YGX/, /files/ENCFF110MCL/ 1200573612 ENCODE Processing Pipeline d8567666de137dbd45ad96ca3e1c7e7f https://www.encodeproject.org/files/ENCFF332TZO/@@download/ENCFF332TZO.bam released s3://encode-public/2020/10/08/ff088f01-2238-463e-b583-31f43524c40b/ENCFF332TZO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF001KKW bam bam alignments mm9 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 1118182709 Bing Ren, UCSD d6e1c923d7e55ecf23425c495bca8b99 https://www.encodeproject.org/files/ENCFF001KKW/@@download/ENCFF001KKW.bam archived s3://encode-public/2011/12/23/b58dc7ec-76d2-48e6-aba8-f35fde024655/ENCFF001KKW.bam Lab custom mm9 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF001KKX bam bam alignments mm9 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF001KLI/ 337260914 Bing Ren, UCSD 949ca02244a4ca6e225975d1797a43d6 https://www.encodeproject.org/files/ENCFF001KKX/@@download/ENCFF001KKX.bam archived s3://encode-public/2011/12/23/d3402350-ac58-4851-a088-05673fea6d99/ENCFF001KKX.bam Lab custom mm9 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF001KLB bigWig bigWig signal mm9 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 /files/ENCFF001KKX/ 69401920 Bing Ren, UCSD d0e458f216010b16ed7d0b31a607c4f0 https://www.encodeproject.org/files/ENCFF001KLB/@@download/ENCFF001KLB.bigWig archived s3://encode-public/2011/12/23/40aa6b86-9d40-4006-9302-90775530fe9d/ENCFF001KLB.bigWig Lab custom mm9 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF001KLI fastq fastq reads ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 single-ended 344882193 Bing Ren, UCSD 3d32e79a3258396a61db1f004ef482b1 https://www.encodeproject.org/files/ENCFF001KLI/@@download/ENCFF001KLI.fastq.gz Illumina Genome Analyzer II archived s3://encode-public/2011/12/23/b0db4594-52fc-4358-8a6b-39f18d11e17a/ENCFF001KLI.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF001KMA fastq fastq reads ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 single-ended 1250461149 Bing Ren, UCSD e867efa3f6926a0d6f63ed723835090a https://www.encodeproject.org/files/ENCFF001KMA/@@download/ENCFF001KMA.fastq.gz Illumina Genome Analyzer II archived s3://encode-public/2011/12/23/664ccd5a-9afc-40e0-89d6-781f9b0160f8/ENCFF001KMA.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF001LLU bam bam alignments mm9 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF044CWG/ 735186177 Bing Ren, UCSD abc17c7a6bc591c315657e5361ba7b55 https://www.encodeproject.org/files/ENCFF001LLU/@@download/ENCFF001LLU.bam archived s3://encode-public/2012/02/14/d842a04f-d18f-47fd-9295-b58db034bc6e/ENCFF001LLU.bam Lab custom mm9 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF332QPA bam bam unfiltered alignments mm10-minimal ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF806TVZ/, /files/ENCFF001KLI/ 363353388 J. Michael Cherry, Stanford e099b6eb0de4a01e98d09ad428edddfb https://www.encodeproject.org/files/ENCFF332QPA/@@download/ENCFF332QPA.bam archived s3://encode-public/2015/02/10/bfbdc6e9-73e8-4ba2-9f2e-79b62a636e22/ENCFF332QPA.bam ENCODE3 mm10-minimal released mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF694MOX bam bam alignments mm10 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 36 /files/ENCFF001KLI/, /files/ENCFF001KMA/ 1464499224 J. Michael Cherry, Stanford c717dca4234d360405aa9e4a81387b47 https://www.encodeproject.org/files/ENCFF694MOX/@@download/ENCFF694MOX.bam archived s3://encode-public/2015/02/09/ac40b5dd-ce0b-41b3-baab-c5a4171ff6b5/ENCFF694MOX.bam Lab custom mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF435SEY bam bam alignments mm10-minimal ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF806TVZ/, /files/ENCFF001KLI/ 106820155 J. Michael Cherry, Stanford 59bd0291d203d5870486ac9d44160f59 https://www.encodeproject.org/files/ENCFF435SEY/@@download/ENCFF435SEY.bam archived s3://encode-public/2015/05/24/cda57234-22f7-4233-8c9c-513a470fd917/ENCFF435SEY.bam ENCODE3 mm10-minimal released mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF044CWG fastq fastq reads ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 single-ended 674680573 Bing Ren, UCSD 2537cf67291ce6dfa734a16dc41eb4f2 https://www.encodeproject.org/files/ENCFF044CWG/@@download/ENCFF044CWG.fastq.gz Illumina Genome Analyzer II archived s3://encode-public/2015/06/22/7fd3cc08-e259-4073-8dbd-8dc1a444e8e5/ENCFF044CWG.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF688WNM bam bam alignments mm10 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF018NEO/, /files/ENCFF001KLI/ 106789983 ENCODE Processing Pipeline b66532d434014c5a449d85ba1c26574f https://www.encodeproject.org/files/ENCFF688WNM/@@download/ENCFF688WNM.bam archived s3://encode-public/2016/04/28/f1bc8595-a992-48bd-87ef-feaaf2443b71/ENCFF688WNM.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF380OBK bam bam alignments mm10 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF044CWG/ 526490583 ENCODE Processing Pipeline 08398052d0ae957672cac043227924b4 https://www.encodeproject.org/files/ENCFF380OBK/@@download/ENCFF380OBK.bam archived s3://encode-public/2016/04/28/96561416-f68d-4c31-9640-9145e4017461/ENCFF380OBK.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF785RSZ bam bam unfiltered alignments mm10 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 2 2_1 30 /files/ENCFF018NEO/, /files/ENCFF001KLI/ 363572455 ENCODE Processing Pipeline a42ad8667d705bdf33b93d7f29e4a7cc https://www.encodeproject.org/files/ENCFF785RSZ/@@download/ENCFF785RSZ.bam archived s3://encode-public/2016/07/06/d2bcb03f-5a54-40bc-a522-6d33623dc013/ENCFF785RSZ.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF921MQF bam bam unfiltered alignments mm10 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF044CWG/ 824531489 ENCODE Processing Pipeline e11b9edd7120e65324f7cfa32962a5e6 https://www.encodeproject.org/files/ENCFF921MQF/@@download/ENCFF921MQF.bam archived s3://encode-public/2016/07/06/5bb0862e-1c10-408f-a721-4ce40d613d0b/ENCFF921MQF.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF537SBV bam bam unfiltered alignments mm10 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF018NEO/, /files/ENCFF044CWG/ 768266816 ENCODE Processing Pipeline 32888c92deb53945c709c5775317faae https://www.encodeproject.org/files/ENCFF537SBV/@@download/ENCFF537SBV.bam archived s3://encode-public/2016/12/16/453cbbbc-e3b3-4a8f-8deb-3e8009290fee/ENCFF537SBV.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF420EJF bam bam alignments mm10 ENCSR000CCP Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA 2012-04-13 ENCODE see document 200-500 1 1_1 30 /files/ENCFF018NEO/, /files/ENCFF044CWG/ 470352049 ENCODE Processing Pipeline 35e6bbdfb2bf09ddf7af20cad05a83e7 https://www.encodeproject.org/files/ENCFF420EJF/@@download/ENCFF420EJF.bam archived s3://encode-public/2016/12/16/56f39113-0ad9-4fb2-9f4a-82500b4b028e/ENCFF420EJF.bam ENCODE3 mm10 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read length, poor library complexity, severe bottlenecking extremely low read depth ENCFF000RMA bam bam alignments hg19 ENCSR000DNB Control ChIP-seq EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 36 1478736538 Vishwanath Iyer, UTA 0f17442a40250b0f831fffdd9dcf59d9 https://www.encodeproject.org/files/ENCFF000RMA/@@download/ENCFF000RMA.bam archived s3://encode-public/2012/07/26/f6625169-6739-431e-a364-cf7e68680883/ENCFF000RMA.bam Lab custom hg19 archived low read length ENCFF000RMD bigWig bigWig signal hg19 ENCSR000DNB Control ChIP-seq EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 4508996030 Vishwanath Iyer, UTA 36954296ee8439c0121139ad5be57f7c https://www.encodeproject.org/files/ENCFF000RMD/@@download/ENCFF000RMD.bigWig archived s3://encode-public/2012/07/26/7bc908a0-b9e8-48c3-96e4-c3127cc5e407/ENCFF000RMD.bigWig Lab custom hg19 archived low read length ENCFF000RMI fastq fastq reads ENCSR000DNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 single-ended 1391254897 Vishwanath Iyer, UTA 3738dc8b22cc0d554f73eee05d7c7cf6 https://www.encodeproject.org/files/ENCFF000RMI/@@download/ENCFF000RMI.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/a8ff9206-17a6-4c21-9d97-dbf1a938ad62/ENCFF000RMI.fastq.gz low read length ENCFF721CZL bam bam unfiltered alignments GRCh38 ENCSR000DNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RMI/ 1897949733 ENCODE Processing Pipeline 7f3a1be5b7ce63b9252135b5004a0bc1 https://www.encodeproject.org/files/ENCFF721CZL/@@download/ENCFF721CZL.bam released s3://encode-public/2016/10/26/9a85ef6e-8db1-40c5-b6ba-06c628a01033/ENCFF721CZL.bam ENCODE3 GRCh38 archived low read length ENCFF810XBE bam bam alignments GRCh38 ENCSR000DNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RMI/ 1168159678 ENCODE Processing Pipeline 8984ea51c51790acab8d6b12b9505da4 https://www.encodeproject.org/files/ENCFF810XBE/@@download/ENCFF810XBE.bam released s3://encode-public/2016/10/26/0afb8c32-d8d7-4244-b049-8151f7c577c9/ENCFF810XBE.bam ENCODE3 GRCh38 archived low read length ENCFF020BND bam bam alignments hg19 ENCSR000DNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RMI/ 1168213654 ENCODE Processing Pipeline 147ab110ccb21af260a6e615707d12ac https://www.encodeproject.org/files/ENCFF020BND/@@download/ENCFF020BND.bam released s3://encode-public/2017/12/15/a0b97663-cf9f-4ea4-b20e-1af5308db339/ENCFF020BND.bam ENCODE3 hg19 archived low read length ENCFF806HUC bam bam unfiltered alignments hg19 ENCSR000DNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RMI/ 1893140318 ENCODE Processing Pipeline 85ef45050438f1ec17bb12f6a3a5bca9 https://www.encodeproject.org/files/ENCFF806HUC/@@download/ENCFF806HUC.bam released s3://encode-public/2017/12/15/3af4b1c9-b142-4952-886f-c7b8ea38df73/ENCFF806HUC.bam ENCODE3 hg19 archived low read length ENCFF061MGX bam bam alignments GRCh38 ENCSR000DNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000RMI/ 1321677194 ENCODE Processing Pipeline 80d01475c9056829623288ca68edd36a https://www.encodeproject.org/files/ENCFF061MGX/@@download/ENCFF061MGX.bam released s3://encode-public/2020/09/03/9653c928-912d-44db-b48d-6aa748c3f803/ENCFF061MGX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF138CEY bam bam unfiltered alignments GRCh38 ENCSR000DNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2012-08-27 ENCODE see document 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2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OLW/ 1383637887 ENCODE Processing Pipeline c7750a05686740da69009d3698ef463d https://www.encodeproject.org/files/ENCFF248VAA/@@download/ENCFF248VAA.bam released s3://encode-public/2016/11/13/afa2360d-a26b-42b7-8505-d06127568f27/ENCFF248VAA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF671VNQ bam bam alignments hg19 ENCSR000BHY Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000OLW/ 666067637 ENCODE Processing Pipeline 271204458efb216611c889d3755df98f https://www.encodeproject.org/files/ENCFF671VNQ/@@download/ENCFF671VNQ.bam released s3://encode-public/2016/11/13/0e8867a9-9aa7-4301-b5eb-af6ade0aa0d1/ENCFF671VNQ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF555VPZ bam bam alignments GRCh38 ENCSR000BHY Control ChIP-seq /human-donors/ENCDO000AAL/ EFO:0002786 GM12892 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https://www.encodeproject.org/files/ENCFF825ACO/@@download/ENCFF825ACO.bam released s3://encode-public/2021/09/14/b091b6c6-65b9-42e1-85a8-c7188ae911a5/ENCFF825ACO.bam ENCODE4 v1.8.0 GRCh38 released ENCFF630VPV fastq fastq reads ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF401JOM/ 3357894323 Michael Snyder, Stanford 65c79234de3c4cdfeb83dd08e643bcb8 SRA:SRR6212689 https://www.encodeproject.org/files/ENCFF630VPV/@@download/ENCFF630VPV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/b7b259b7-2881-4b86-be43-7da1b88d70c2/ENCFF630VPV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF401JOM fastq fastq reads ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF630VPV/ 3831011093 Michael Snyder, Stanford 290b211ea4c0dfa098733aa914a444e2 SRA:SRR6212689 https://www.encodeproject.org/files/ENCFF401JOM/@@download/ENCFF401JOM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/c566e1d7-dafe-4718-9fea-624dc0436436/ENCFF401JOM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF641IQX bam bam unfiltered alignments GRCh38 ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 101 /files/ENCFF401JOM/, /files/ENCFF643CGH/, /files/ENCFF630VPV/ 6699124255 ENCODE Processing Pipeline bc1d158cc7432ff2a982cfc964fb2006 https://www.encodeproject.org/files/ENCFF641IQX/@@download/ENCFF641IQX.bam released s3://encode-public/2017/02/01/8bcfe83b-bb2f-4d7b-97d7-bac2b6ea4a4b/ENCFF641IQX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF004MGP bam bam alignments hg19 ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 101 /files/ENCFF401JOM/, /files/ENCFF807MUK/, /files/ENCFF630VPV/ 4596989019 ENCODE Processing Pipeline 3733f96c434b0986f78d76b108d94af1 https://www.encodeproject.org/files/ENCFF004MGP/@@download/ENCFF004MGP.bam released s3://encode-public/2017/02/01/10d4b7bb-f31d-4fc0-9926-85b91ddd9203/ENCFF004MGP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF046EEF bam bam unfiltered alignments hg19 ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 101 /files/ENCFF401JOM/, /files/ENCFF807MUK/, /files/ENCFF630VPV/ 6689152402 ENCODE Processing Pipeline 3ed5f2a526b239a14ac7820a9959bc3c https://www.encodeproject.org/files/ENCFF046EEF/@@download/ENCFF046EEF.bam released s3://encode-public/2017/02/01/cdadad15-99f6-4f3d-8396-2788618fb045/ENCFF046EEF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF863CTX bam bam alignments GRCh38 ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 101 /files/ENCFF401JOM/, /files/ENCFF643CGH/, /files/ENCFF630VPV/ 4608583103 ENCODE Processing Pipeline 50447fe2556317b8128352f6bc29aee0 https://www.encodeproject.org/files/ENCFF863CTX/@@download/ENCFF863CTX.bam released s3://encode-public/2017/02/01/cba36808-b0a5-46f9-86a8-ed62390e38f4/ENCFF863CTX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF931WHN bam bam unfiltered alignments GRCh38 ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF630VPV/, /files/ENCFF401JOM/ 6715534396 ENCODE Processing Pipeline c20c204d9ab5add7efd5e8ca2c143837 https://www.encodeproject.org/files/ENCFF931WHN/@@download/ENCFF931WHN.bam released s3://encode-public/2020/06/03/dc1c0f45-402f-4000-ada2-637f6ccd9962/ENCFF931WHN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF490DMN bam bam alignments GRCh38 ENCSR126QXT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-02-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF630VPV/, /files/ENCFF401JOM/ 4529080044 ENCODE Processing Pipeline 9a7c104aa8d1a2740c4d055c7e855ce2 https://www.encodeproject.org/files/ENCFF490DMN/@@download/ENCFF490DMN.bam released s3://encode-public/2020/06/03/8259e2c9-5797-4f3f-879b-4566e676c1e0/ENCFF490DMN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF000VCV bam bam alignments hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 32 /files/ENCFF000VCW/, /files/ENCFF000VCY/ 788709041 Peggy Farnham, USC ed20a31b6f58391c5fab03ad693f540e https://www.encodeproject.org/files/ENCFF000VCV/@@download/ENCFF000VCV.bam archived s3://encode-public/2011/03/22/1f99529b-7c57-4e9b-b093-256613c31cb6/ENCFF000VCV.bam Lab custom hg19 archived low read length ENCFF000VCW fastq fastq reads ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 single-ended 781536682 Peggy Farnham, USC f87aff5de549265dcf720f72fedcb125 SRA:SRR4235531 https://www.encodeproject.org/files/ENCFF000VCW/@@download/ENCFF000VCW.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/34795d8e-4872-46aa-a56f-3d3dadff1879/ENCFF000VCW.fastq.gz low read length ENCFF000VDA bigWig bigWig signal hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 /files/ENCFF000VCV/ 316129147 Peggy Farnham, USC d0b4eea05631a7b8afd1f120ebc91501 https://www.encodeproject.org/files/ENCFF000VDA/@@download/ENCFF000VDA.bigWig archived s3://encode-public/2011/03/22/ebc00ec2-0f3b-488a-b405-fa342c4fef13/ENCFF000VDA.bigWig Lab custom hg19 archived low read length ENCFF000WWU bigWig bigWig signal hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 2 2_1 /files/ENCFF000WWW/ 297122009 Peggy Farnham, USC 4fac8cf5d28494dbb2a5e910b93b40a9 https://www.encodeproject.org/files/ENCFF000WWU/@@download/ENCFF000WWU.bigWig archived s3://encode-public/2010/12/06/dcfc6d96-6c0c-468a-9a6c-3a4ff626eca1/ENCFF000WWU.bigWig Lab custom hg19 archived low read length ENCFF000WWW bam bam alignments hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 2 2_1 32 /files/ENCFF000WXB/ 492447699 Peggy Farnham, USC d78ebf6da51ab6e79621080884cb66f1 https://www.encodeproject.org/files/ENCFF000WWW/@@download/ENCFF000WWW.bam archived s3://encode-public/2010/12/06/e3c07276-0c2b-46e8-9a82-1432a645a856/ENCFF000WWW.bam Lab custom hg19 archived low read length ENCFF000WXB fastq fastq reads ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 2 2_1 32 single-ended 397578454 Peggy Farnham, USC b4a225faf3b4b4d621243e137385aec2 SRA:SRR4235532 https://www.encodeproject.org/files/ENCFF000WXB/@@download/ENCFF000WXB.fastq.gz Illumina Genome Analyzer archived s3://encode-public/2010/12/06/8078db59-2386-4eea-a8f6-10b12e519ffe/ENCFF000WXB.fastq.gz low read length ENCFF000VCY fastq fastq reads ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 single-ended 759734926 Peggy Farnham, USC 2299c9e7627942f857e348729a2d7a26 SRA:SRR4235533 https://www.encodeproject.org/files/ENCFF000VCY/@@download/ENCFF000VCY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/71398a2e-1dfe-49b3-9325-8e1da19e152a/ENCFF000VCY.fastq.gz low read length ENCFF812GKO bam bam alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 2 2_1 32 /files/ENCFF000WXB/, /files/ENCFF643CGH/ 298542267 ENCODE Processing Pipeline 406b8417b7e19083e345e00c7ace1240 https://www.encodeproject.org/files/ENCFF812GKO/@@download/ENCFF812GKO.bam archived s3://encode-public/2016/07/13/6b3181a3-0137-4dfe-9b07-2ae79217440f/ENCFF812GKO.bam ENCODE3 GRCh38 archived low read length ENCFF371UEJ bam bam unfiltered alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 2 2_1 32 /files/ENCFF000WXB/, /files/ENCFF643CGH/ 494361956 ENCODE Processing Pipeline e447cb2891545c494452d244dfd14544 https://www.encodeproject.org/files/ENCFF371UEJ/@@download/ENCFF371UEJ.bam archived s3://encode-public/2016/07/13/134ca9f6-8c6e-4a98-baf5-ae89ee40d811/ENCFF371UEJ.bam ENCODE3 GRCh38 archived low read length ENCFF885RHY bam bam unfiltered alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1714850848 ENCODE Processing Pipeline 9b9649d0d9da2467541cd3662cd8c3b3 https://www.encodeproject.org/files/ENCFF885RHY/@@download/ENCFF885RHY.bam released s3://encode-public/2016/07/13/734cf4f9-d5a8-45f3-9c8f-3ec981881b24/ENCFF885RHY.bam ENCODE3 GRCh38 archived low read length ENCFF878LDQ bam bam alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1104860925 ENCODE Processing Pipeline 87693bd1720047ae2b4fab87993f0bd4 https://www.encodeproject.org/files/ENCFF878LDQ/@@download/ENCFF878LDQ.bam released s3://encode-public/2016/07/13/d4b8d9e5-a581-4d3a-84ac-200e8a3cfa88/ENCFF878LDQ.bam ENCODE3 GRCh38 archived low read length ENCFF358ZVL bam bam unfiltered alignments hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1709554762 ENCODE Processing Pipeline 65a57d100ece20bb55ca1bba1ff1dc09 https://www.encodeproject.org/files/ENCFF358ZVL/@@download/ENCFF358ZVL.bam released s3://encode-public/2016/08/23/6b511a17-f5b2-40c6-80df-da455b070f80/ENCFF358ZVL.bam ENCODE3 hg19 archived low read length ENCFF149SOH bam bam alignments hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1104955964 ENCODE Processing Pipeline f6a4a31889a8edc62577f5d7b7aa51f8 https://www.encodeproject.org/files/ENCFF149SOH/@@download/ENCFF149SOH.bam released s3://encode-public/2016/08/23/f904ac18-4907-4006-90d2-bbf3d25ca7f6/ENCFF149SOH.bam ENCODE3 hg19 archived low read length ENCFF285EDT bam bam alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1006850534 ENCODE Processing Pipeline 8320553606ad4968a71ac719e97200ec https://www.encodeproject.org/files/ENCFF285EDT/@@download/ENCFF285EDT.bam released s3://encode-public/2017/07/28/44fe6333-c0f4-40c9-b85e-d9cfd618ef21/ENCFF285EDT.bam ENCODE3 GRCh38 archived low read length ENCFF307KKC bam bam alignments hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 32 /files/ENCFF807MUK/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1007089792 ENCODE Processing Pipeline 686e9120535fa4c76583f6f782abdcbf https://www.encodeproject.org/files/ENCFF307KKC/@@download/ENCFF307KKC.bam released s3://encode-public/2017/07/28/ecb12d12-9f24-491f-8cc0-3022758af96c/ENCFF307KKC.bam ENCODE3 hg19 archived low read length ENCFF408PAH bam bam unfiltered alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 32 /files/ENCFF643CGH/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1616558978 ENCODE Processing Pipeline c8e28e10a10c2cfe74f0856d9b1487ac https://www.encodeproject.org/files/ENCFF408PAH/@@download/ENCFF408PAH.bam released s3://encode-public/2017/07/28/1d9e6dc1-57d1-4de8-9471-cbf9005e427b/ENCFF408PAH.bam ENCODE3 GRCh38 archived low read length ENCFF048FCJ bam bam unfiltered alignments hg19 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 32 /files/ENCFF807MUK/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1611727833 ENCODE Processing Pipeline 14b00a71d36d51cfbbf13b798253d0cf https://www.encodeproject.org/files/ENCFF048FCJ/@@download/ENCFF048FCJ.bam released s3://encode-public/2017/07/28/f7d2612f-be3e-4f06-953a-dc1c5e5463d7/ENCFF048FCJ.bam ENCODE3 hg19 archived low read length ENCFF151YGG bam bam alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1104860960 ENCODE Processing Pipeline a05b9468801d95d8b772e93bf0c4d5cc https://www.encodeproject.org/files/ENCFF151YGG/@@download/ENCFF151YGG.bam released s3://encode-public/2020/02/18/7121a48e-77ef-463e-8bb3-3ac230df0be9/ENCFF151YGG.bam low read length ENCFF046BVQ bam bam unfiltered alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000VCW/, /files/ENCFF000VCY/ 1714850887 ENCODE Processing Pipeline 69860aaa0dcda0c79334fb6c9d0b1117 https://www.encodeproject.org/files/ENCFF046BVQ/@@download/ENCFF046BVQ.bam released s3://encode-public/2020/02/18/e28fa20f-7592-4383-a2db-d1b27a6a1763/ENCFF046BVQ.bam low read length ENCFF132AWL bam bam alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF000VCW/, /files/ENCFF000VCY/, /files/ENCFF110MCL/ 1200176875 ENCODE Processing Pipeline 0498184bf09317ad7b4bdde27d1d06b8 https://www.encodeproject.org/files/ENCFF132AWL/@@download/ENCFF132AWL.bam released s3://encode-public/2020/09/16/d380941b-4b99-4b0c-8de9-fcf38da175b9/ENCFF132AWL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF279HIZ bam bam unfiltered alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 36 /files/ENCFF000VCW/, /files/ENCFF000VCY/, /files/ENCFF110MCL/ 1685249738 ENCODE Processing Pipeline 4ce062468763bdc7e6164b1108c9b9c8 https://www.encodeproject.org/files/ENCFF279HIZ/@@download/ENCFF279HIZ.bam released s3://encode-public/2020/09/16/f4411671-2939-404c-96f6-7c9fe12d1ebb/ENCFF279HIZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF567EQR bam bam alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 32 /files/ENCFF000VCW/, /files/ENCFF000VCY/, /files/ENCFF110MCL/ 1054489417 ENCODE Processing Pipeline a1b12cabfb01c06091b743c8d1d8b6af https://www.encodeproject.org/files/ENCFF567EQR/@@download/ENCFF567EQR.bam released s3://encode-public/2021/02/04/38c7d0da-f891-4686-925c-c0aa18dd2bee/ENCFF567EQR.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF668KZG bam bam unfiltered alignments GRCh38 ENCSR000EUX Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-06-15 ENCODE see document 1 1_1 32 /files/ENCFF000VCW/, /files/ENCFF000VCY/, /files/ENCFF110MCL/ 1574395735 ENCODE Processing Pipeline b3f8e9ddade375a04ee74e0cf639fe10 https://www.encodeproject.org/files/ENCFF668KZG/@@download/ENCFF668KZG.bam released s3://encode-public/2021/02/04/127607c3-a184-488d-adfa-393532731618/ENCFF668KZG.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF000ZVO bam bam alignments hg19 ENCSR000DKE Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 36 605704128 Kevin White, UChicago 21a4e30d315371585b1f04cfe80c6661 https://www.encodeproject.org/files/ENCFF000ZVO/@@download/ENCFF000ZVO.bam archived s3://encode-public/2011/01/27/5fd7eab3-235d-4b52-8f38-904594e66e24/ENCFF000ZVO.bam Lab custom hg19 archived low read depth, low read length ENCFF000ZVZ fastq fastq reads ENCSR000DKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 single-ended 715793842 Kevin White, UChicago 12d8e6844092e5b48e6b9e15196d7a3b https://www.encodeproject.org/files/ENCFF000ZVZ/@@download/ENCFF000ZVZ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2011/01/27/b4816837-abd7-4642-8a37-44860bdab270/ENCFF000ZVZ.fastq.gz low read depth, low read length ENCFF251NRU bam bam unfiltered alignments GRCh38 ENCSR000DKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZVZ/ 867348365 ENCODE Processing Pipeline e939648d84fa426af699147d390c9efe https://www.encodeproject.org/files/ENCFF251NRU/@@download/ENCFF251NRU.bam released s3://encode-public/2016/10/26/ab20500e-dabf-4037-bea0-9d6b187edfcb/ENCFF251NRU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF783MVR bam bam alignments GRCh38 ENCSR000DKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000ZVZ/ 611348351 ENCODE Processing Pipeline dd0d7348c03a4128fca8ad6a720c769c https://www.encodeproject.org/files/ENCFF783MVR/@@download/ENCFF783MVR.bam released s3://encode-public/2016/10/26/ad085a77-e7a8-44cd-b14b-714d0943a4e3/ENCFF783MVR.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF321WLK bam bam unfiltered alignments GRCh38 ENCSR000DKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVZ/, /files/ENCFF110MCL/ 851577044 ENCODE Processing Pipeline edd1b75769c6c9e4d9ce97669794a854 https://www.encodeproject.org/files/ENCFF321WLK/@@download/ENCFF321WLK.bam released s3://encode-public/2020/10/27/e0e9eb50-df3f-4112-bf25-233cd7251208/ENCFF321WLK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF392OEE bam bam alignments GRCh38 ENCSR000DKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-06-03 ENCODE see document 2 2_1 36 /files/ENCFF000ZVZ/, /files/ENCFF110MCL/ 661553133 ENCODE Processing Pipeline 8417365287dafccce0353aa9da845855 https://www.encodeproject.org/files/ENCFF392OEE/@@download/ENCFF392OEE.bam released s3://encode-public/2020/10/27/b0f9e4b6-8cfc-4853-80db-4edf8168ee26/ENCFF392OEE.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000QWX bam bam alignments hg19 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF000QXN/ 304514970 Richard Myers, HAIB f7012318cd0a6c7b92bfb5a035516ce0 https://www.encodeproject.org/files/ENCFF000QWX/@@download/ENCFF000QWX.bam archived s3://encode-public/2012/01/23/959a94e8-e6a1-44a0-a56f-bec03c6514f0/ENCFF000QWX.bam Lab custom hg19 archived insufficient read depth extremely low read length ENCFF000QXA bigWig bigWig raw signal hg19 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 3009849 Richard Myers, HAIB 3929c2f6ab845bd76270e9466a7a63e8 https://www.encodeproject.org/files/ENCFF000QXA/@@download/ENCFF000QXA.bigWig archived s3://encode-public/2012/01/23/40fbde38-bc5c-4fff-8fc4-b12f7b3264c4/ENCFF000QXA.bigWig Lab custom hg19 archived insufficient read depth extremely low read length ENCFF000QXN fastq fastq reads ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 single-ended 282614994 Richard Myers, HAIB 869cc514b96df037dc6bdf07c81d2982 https://www.encodeproject.org/files/ENCFF000QXN/@@download/ENCFF000QXN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/a578b6e4-819e-47fe-b4d4-da7c489931a6/ENCFF000QXN.fastq.gz insufficient read depth extremely low read length ENCFF606FHK bam bam unfiltered alignments GRCh38 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF000QXN/, /files/ENCFF643CGH/ 429941493 ENCODE Processing Pipeline 018c747a004ad005f6f8635889518702 https://www.encodeproject.org/files/ENCFF606FHK/@@download/ENCFF606FHK.bam released s3://encode-public/2016/10/26/b4e3347f-3895-4def-89f7-33a3b5d555ec/ENCFF606FHK.bam ENCODE3 GRCh38 archived insufficient read depth extremely low read length ENCFF902AOQ bam bam alignments GRCh38 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF000QXN/, /files/ENCFF643CGH/ 175866089 ENCODE Processing Pipeline afc5258e35c1f33c0222d21842db09b0 https://www.encodeproject.org/files/ENCFF902AOQ/@@download/ENCFF902AOQ.bam released s3://encode-public/2016/10/26/bb52a05e-c408-478c-b65a-378b5d13d3a5/ENCFF902AOQ.bam ENCODE3 GRCh38 archived insufficient read depth extremely low read length ENCFF032SQZ bam bam alignments hg19 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF000QXN/, /files/ENCFF807MUK/ 176106858 ENCODE Processing Pipeline 55f5f235e94407fc2c513b1731775c9c https://www.encodeproject.org/files/ENCFF032SQZ/@@download/ENCFF032SQZ.bam released s3://encode-public/2016/11/13/7998272f-b66d-48ad-9efe-8f108a54c680/ENCFF032SQZ.bam ENCODE3 hg19 archived insufficient read depth extremely low read length ENCFF909FED bam bam unfiltered alignments hg19 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF000QXN/, /files/ENCFF807MUK/ 429236603 ENCODE Processing Pipeline e9a08aa11abea3800d92264f82f3c362 https://www.encodeproject.org/files/ENCFF909FED/@@download/ENCFF909FED.bam released s3://encode-public/2016/11/13/d9448213-ab9e-464a-a782-52baa9e3e90b/ENCFF909FED.bam ENCODE3 hg19 archived insufficient read depth extremely low read length ENCFF167GPD bam bam unfiltered alignments GRCh38 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF000QXN/, /files/ENCFF110MCL/ 387480923 ENCODE Processing Pipeline 8dfeb50a6b71f3b0368e5d43753a3096 https://www.encodeproject.org/files/ENCFF167GPD/@@download/ENCFF167GPD.bam released s3://encode-public/2020/10/28/1f77ce6c-956c-47c5-90dc-6ba0a2c5bcc2/ENCFF167GPD.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth extremely low read length ENCFF832ZVR bam bam alignments GRCh38 ENCSR000BOD Control ChIP-seq /human-donors/ENCDO000ABC/ EFO:0002860 SK-N-MC cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF000QXN/, /files/ENCFF110MCL/ 194176451 ENCODE Processing Pipeline bd07bf0f8b7ea77e0997662691d74acd https://www.encodeproject.org/files/ENCFF832ZVR/@@download/ENCFF832ZVR.bam released s3://encode-public/2020/10/28/ab98c124-74b1-45f8-aaf9-1690fcc8131a/ENCFF832ZVR.bam ENCODE4 v1.5.1 GRCh38 released insufficient read depth extremely low read length ENCFF234VXH tagAlign tagAlign alignments hg19 ENCSR214UPJ Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172624/ 301691040 Anshul Kundaje, Stanford da2afc49b991ca6df27c20e755741336 https://www.encodeproject.org/files/ENCFF234VXH/@@download/ENCFF234VXH.tagAlign.gz archived s3://encode-public/2016/03/30/daec0367-8a8d-4a9c-b9f7-ddb28de0b57f/ENCFF234VXH.tagAlign.gz Lab custom hg19 archived ENCFF972BYL tagAlign tagAlign alignments hg19 ENCSR214UPJ Control ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 204580300 Anshul Kundaje, Stanford 535e7c5d833f385e823651276b1c64ba https://www.encodeproject.org/files/ENCFF972BYL/@@download/ENCFF972BYL.tagAlign.gz archived s3://encode-public/2016/02/11/5469c8fa-ae07-434b-a2df-f51e7fd0d1bd/ENCFF972BYL.tagAlign.gz Lab custom hg19 archived ENCFF641ZFU bam bam redacted unfiltered alignments GRCh38 ENCSR214UPJ Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF798QSC/, /files/ENCFF643CGH/ 705622798 ENCODE Processing Pipeline dbc48e9b675f0b494a2a068600911152 https://www.encodeproject.org/files/ENCFF641ZFU/@@download/ENCFF641ZFU.bam released s3://encode-public/2017/11/09/caba1e50-4c62-492e-831c-feca42c38556/ENCFF641ZFU.bam ENCODE3 GRCh38 archived ENCFF782IOW bam bam redacted alignments GRCh38 ENCSR214UPJ Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF798QSC/, /files/ENCFF643CGH/ 551239874 ENCODE Processing Pipeline cc4f4cd71c248a355af3a74cce003e3e https://www.encodeproject.org/files/ENCFF782IOW/@@download/ENCFF782IOW.bam released s3://encode-public/2017/11/09/0b75f052-7111-427c-9a55-b1cd71fbdef4/ENCFF782IOW.bam ENCODE3 GRCh38 archived ENCFF393LRY bam bam redacted alignments hg19 ENCSR214UPJ Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF798QSC/, /files/ENCFF807MUK/ 550291595 ENCODE Processing Pipeline 318c6effd2137de2345d846a9010d5a9 https://www.encodeproject.org/files/ENCFF393LRY/@@download/ENCFF393LRY.bam released s3://encode-public/2018/01/20/8709b116-a6ad-454c-83ee-e6fe088f251b/ENCFF393LRY.bam ENCODE3 hg19 archived ENCFF697KTD bam bam redacted unfiltered alignments hg19 ENCSR214UPJ Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF798QSC/, /files/ENCFF807MUK/ 693135126 ENCODE Processing Pipeline d1c611e57b9e339aabeff07a614425f6 https://www.encodeproject.org/files/ENCFF697KTD/@@download/ENCFF697KTD.bam released s3://encode-public/2018/01/20/4c3b334a-a16e-49cb-811e-8ecd340c0075/ENCFF697KTD.bam ENCODE3 hg19 archived ENCFF059SQC bam bam redacted alignments GRCh38 ENCSR214UPJ Control ChIP-seq /human-donors/ENCDO047TBB/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF709JWW/ 3634533013 ENCODE Processing Pipeline 6226e8b81c55ce5d5a300b1b0e0977e3 https://www.encodeproject.org/files/ENCFF059SQC/@@download/ENCFF059SQC.bam released s3://encode-public/2021/01/28/50f5dd3e-6dc9-498e-b58d-b19e7454266f/ENCFF059SQC.bam ENCODE4 v1.7.0 GRCh38 released ENCFF170QSV tagAlign tagAlign alignments hg19 ENCSR806RVF Control ChIP-seq /human-donors/ENCDO731PNE/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF409YBO/, /files/ENCFF046LYW/, /files/ENCFF566WUW/, /files/ENCFF297IBP/ 374642297 Anshul Kundaje, Stanford b6b692a744d9a6a2e1382856ad116f27 https://www.encodeproject.org/files/ENCFF170QSV/@@download/ENCFF170QSV.tagAlign.gz archived s3://encode-public/2016/05/02/70948450-1fc3-4fb3-b443-c00fe314bc7f/ENCFF170QSV.tagAlign.gz Lab custom hg19 archived low read length ENCFF201IQZ bam bam redacted unfiltered alignments GRCh38 ENCSR806RVF Control ChIP-seq /human-donors/ENCDO731PNE/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF409YBO/, /files/ENCFF297IBP/, /files/ENCFF046LYW/, /files/ENCFF643CGH/, /files/ENCFF566WUW/ 1166496250 ENCODE Processing Pipeline 98b112baf36d76af3514d3915932ea60 https://www.encodeproject.org/files/ENCFF201IQZ/@@download/ENCFF201IQZ.bam released s3://encode-public/2018/01/18/224463f4-0350-442e-98c5-fdeb7f67e5df/ENCFF201IQZ.bam ENCODE3 GRCh38 archived low read length ENCFF680DIJ bam bam redacted alignments GRCh38 ENCSR806RVF Control ChIP-seq /human-donors/ENCDO731PNE/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF409YBO/, /files/ENCFF297IBP/, /files/ENCFF046LYW/, /files/ENCFF643CGH/, /files/ENCFF566WUW/ 817869284 ENCODE Processing Pipeline 7fe4e0c78f07b2872b6e62ffd1e87357 https://www.encodeproject.org/files/ENCFF680DIJ/@@download/ENCFF680DIJ.bam released s3://encode-public/2018/01/18/cb0325f8-e46a-4f6f-b4c9-80bda923494a/ENCFF680DIJ.bam ENCODE3 GRCh38 archived low read length ENCFF998LOL bam bam redacted alignments hg19 ENCSR806RVF Control ChIP-seq /human-donors/ENCDO731PNE/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF409YBO/, /files/ENCFF297IBP/, /files/ENCFF807MUK/, /files/ENCFF046LYW/, /files/ENCFF566WUW/ 817837484 ENCODE Processing Pipeline d2348ae42ca248242d411d54f59a3062 https://www.encodeproject.org/files/ENCFF998LOL/@@download/ENCFF998LOL.bam released s3://encode-public/2018/01/19/fadfbf6a-26af-4709-bc0f-27c80d7ed6d5/ENCFF998LOL.bam ENCODE3 hg19 archived low read length ENCFF340FRE bam bam redacted unfiltered alignments hg19 ENCSR806RVF Control ChIP-seq /human-donors/ENCDO731PNE/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF409YBO/, /files/ENCFF297IBP/, /files/ENCFF807MUK/, /files/ENCFF046LYW/, /files/ENCFF566WUW/ 1154272800 ENCODE Processing Pipeline 2e8dfaa50fc8a5b975dd3dd2a821a5ef https://www.encodeproject.org/files/ENCFF340FRE/@@download/ENCFF340FRE.bam released s3://encode-public/2018/01/19/8e787d3c-6bfb-4034-80ee-21abca824458/ENCFF340FRE.bam ENCODE3 hg19 archived low read length ENCFF457AQP bam bam redacted alignments GRCh38 ENCSR806RVF Control ChIP-seq /human-donors/ENCDO731PNE/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF046LYW/, /files/ENCFF297IBP/, /files/ENCFF110MCL/, /files/ENCFF566WUW/, /files/ENCFF409YBO/ 2411409496 ENCODE Processing Pipeline 74e69a37d27a97d566651e5eacf48467 https://www.encodeproject.org/files/ENCFF457AQP/@@download/ENCFF457AQP.bam released s3://encode-public/2021/01/28/eb72b0bd-9ba4-43a5-b66c-921b6c5bf9bb/ENCFF457AQP.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF053VYX fastq fastq reads ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF412PFB/ 2553849846 Michael Snyder, Stanford ac35678a65598e14f45e5cb02b3ea00d SRA:SRR6213911 https://www.encodeproject.org/files/ENCFF053VYX/@@download/ENCFF053VYX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/115aeec3-4733-44b3-aa2f-a91646bd6f0b/ENCFF053VYX.fastq.gz mild to moderate bottlenecking ENCFF412PFB fastq fastq reads ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF053VYX/ 2878901921 Michael Snyder, Stanford 1ab0ef6b8c35c6a0fac76b797399e739 SRA:SRR6213911 https://www.encodeproject.org/files/ENCFF412PFB/@@download/ENCFF412PFB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/fe7e4b61-f2ed-43c2-aca2-6aceb9587d0e/ENCFF412PFB.fastq.gz mild to moderate bottlenecking ENCFF468GAP bam bam unfiltered alignments GRCh38 ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF053VYX/, /files/ENCFF412PFB/, /files/ENCFF643CGH/ 5222220005 ENCODE Processing Pipeline 1135ec9868b3672e30ad845de198c104 https://www.encodeproject.org/files/ENCFF468GAP/@@download/ENCFF468GAP.bam released s3://encode-public/2017/03/17/b91bfea8-f13f-4950-9256-feeb5a8b769d/ENCFF468GAP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF341ERK bam bam unfiltered alignments hg19 ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF053VYX/, /files/ENCFF807MUK/, /files/ENCFF412PFB/ 5214848290 ENCODE Processing Pipeline f0e5b47fe5816f304a1db4fc91677078 https://www.encodeproject.org/files/ENCFF341ERK/@@download/ENCFF341ERK.bam released s3://encode-public/2017/03/17/a8f9124f-56d6-4b43-a5ec-874f83b76a4c/ENCFF341ERK.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF188GWO bam bam alignments hg19 ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF053VYX/, /files/ENCFF807MUK/, /files/ENCFF412PFB/ 4275242122 ENCODE Processing Pipeline e4389cedf8b38cfd947778a5412cab6a https://www.encodeproject.org/files/ENCFF188GWO/@@download/ENCFF188GWO.bam released s3://encode-public/2017/03/17/89d93d24-c2b5-4290-ad3f-7ddc265d0dd1/ENCFF188GWO.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF895WIL bam bam alignments GRCh38 ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF053VYX/, /files/ENCFF412PFB/, /files/ENCFF643CGH/ 4280814642 ENCODE Processing Pipeline 24ca28152a3565a633884e928449ef96 https://www.encodeproject.org/files/ENCFF895WIL/@@download/ENCFF895WIL.bam released s3://encode-public/2017/03/17/30922d34-1b3e-4eb7-9135-12611c28d44a/ENCFF895WIL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF863PBD bam bam alignments GRCh38 ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF053VYX/, /files/ENCFF412PFB/ 4166040405 ENCODE Processing Pipeline 67ada0c26c5210475465c21a58044b04 https://www.encodeproject.org/files/ENCFF863PBD/@@download/ENCFF863PBD.bam released s3://encode-public/2020/06/02/a59cc518-cccf-4c8a-a6db-bc28b58905de/ENCFF863PBD.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF100KZF bam bam unfiltered alignments GRCh38 ENCSR800BRO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF053VYX/, /files/ENCFF412PFB/ 5209491547 ENCODE Processing Pipeline 1e52ec53b72aa9139501cb486ba8be4a https://www.encodeproject.org/files/ENCFF100KZF/@@download/ENCFF100KZF.bam released s3://encode-public/2020/06/02/fa89d40b-b191-4759-b367-fda8991fbaa5/ENCFF100KZF.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF097XOR tagAlign tagAlign alignments hg19 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/SRR2173347/ 292499447 Anshul Kundaje, Stanford 5c5f010e3c89badf075450878d2c8a7e https://www.encodeproject.org/files/ENCFF097XOR/@@download/ENCFF097XOR.tagAlign.gz archived s3://encode-public/2016/03/30/b72163d8-8947-403e-b705-8cb072b29993/ENCFF097XOR.tagAlign.gz Lab custom hg19 archived low read depth, mixed run types ENCFF793JAW tagAlign tagAlign alignments hg19 ENCSR038JBA Control ChIP-seq EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 204540289 Anshul Kundaje, Stanford 0c2ddd318148ce500f22cb0e5a22cf66 https://www.encodeproject.org/files/ENCFF793JAW/@@download/ENCFF793JAW.tagAlign.gz archived s3://encode-public/2016/02/11/d7de46ef-2322-4470-9ec9-0549267ab235/ENCFF793JAW.tagAlign.gz Lab custom hg19 archived low read depth, mixed run types ENCFF074DCD bam bam redacted unfiltered alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF354XVC/ 238880650 ENCODE Processing Pipeline dbb52d29f0dbd4f7ec4443cbca712fae https://www.encodeproject.org/files/ENCFF074DCD/@@download/ENCFF074DCD.bam released s3://encode-public/2017/11/09/0619a9ff-05b2-4c25-ae37-7a4914ef7acd/ENCFF074DCD.bam ENCODE3 GRCh38 archived low read depth, mixed run types ENCFF543QSZ bam bam redacted alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF354XVC/ 166044693 ENCODE Processing Pipeline ae7c0d02ec23372264b7cc92268eb8ea https://www.encodeproject.org/files/ENCFF543QSZ/@@download/ENCFF543QSZ.bam released s3://encode-public/2017/11/09/7a8dd889-11b2-454f-9b84-4814b1a55ae7/ENCFF543QSZ.bam ENCODE3 GRCh38 archived low read depth, mixed run types ENCFF555AAQ bam bam redacted unfiltered alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF618CAW/ 324607738 ENCODE Processing Pipeline 9192706504a76c680d356b147a08fbda https://www.encodeproject.org/files/ENCFF555AAQ/@@download/ENCFF555AAQ.bam released s3://encode-public/2017/11/28/862ff2d8-aa25-498c-b7c2-f1f688f7e1c7/ENCFF555AAQ.bam ENCODE3 GRCh38 archived low read depth, mixed run types ENCFF246PRO bam bam redacted alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF618CAW/ 269681590 ENCODE Processing Pipeline c83c0a574c47853d6ed2aedd8d03ae76 https://www.encodeproject.org/files/ENCFF246PRO/@@download/ENCFF246PRO.bam released s3://encode-public/2017/11/28/8f2500d6-0a66-4861-bfe9-608f25acb446/ENCFF246PRO.bam ENCODE3 GRCh38 archived low read depth, mixed run types ENCFF369SZT bam bam redacted alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF618CAW/, /files/ENCFF837WCT/ 720690217 ENCODE Processing Pipeline ff7456cb7501483a102399c1deee9e6a https://www.encodeproject.org/files/ENCFF369SZT/@@download/ENCFF369SZT.bam released s3://encode-public/2017/11/28/ae59533c-5ba0-4912-ba54-d2d7b1782be0/ENCFF369SZT.bam ENCODE3 GRCh38 archived low read depth, mixed run types ENCFF615QQX bam bam redacted unfiltered alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF618CAW/, /files/ENCFF837WCT/ 899593958 ENCODE Processing Pipeline 3d6b68a2c0680057f589eab2ca000c16 https://www.encodeproject.org/files/ENCFF615QQX/@@download/ENCFF615QQX.bam released s3://encode-public/2017/11/28/01cf2180-74d8-4b67-9fd7-07865b82609c/ENCFF615QQX.bam ENCODE3 GRCh38 archived low read depth, mixed run types ENCFF376ONV bam bam redacted alignments hg19 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF354XVC/ 163259286 ENCODE Processing Pipeline 76c15721d91d7714cfe5331b864b1663 https://www.encodeproject.org/files/ENCFF376ONV/@@download/ENCFF376ONV.bam released s3://encode-public/2018/01/20/46607057-c412-4d2d-90a3-8d185b3a33dc/ENCFF376ONV.bam ENCODE3 hg19 archived low read depth, mixed run types ENCFF275QRT bam bam redacted unfiltered alignments hg19 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF354XVC/ 231938831 ENCODE Processing Pipeline 9be6371b2174258ba0062c2c7aa752d7 https://www.encodeproject.org/files/ENCFF275QRT/@@download/ENCFF275QRT.bam released s3://encode-public/2018/01/20/57328125-1c35-4819-8326-71a08c3ab058/ENCFF275QRT.bam ENCODE3 hg19 archived low read depth, mixed run types ENCFF727SUW bam bam redacted unfiltered alignments hg19 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF618CAW/ 319225051 ENCODE Processing Pipeline 0eac81d4e3662ded7110fd19699abd8a https://www.encodeproject.org/files/ENCFF727SUW/@@download/ENCFF727SUW.bam released s3://encode-public/2018/01/21/2c9c8466-2020-467f-bd0d-3e264241e1a4/ENCFF727SUW.bam ENCODE3 hg19 archived low read depth, mixed run types ENCFF680DNU bam bam redacted alignments hg19 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF618CAW/ 269342608 ENCODE Processing Pipeline ade02166ae0119914ba2dbeeb1a598d6 https://www.encodeproject.org/files/ENCFF680DNU/@@download/ENCFF680DNU.bam released s3://encode-public/2018/01/21/d3c9a758-9af3-419e-9ca3-e1e439072f2a/ENCFF680DNU.bam ENCODE3 hg19 archived low read depth, mixed run types ENCFF771GGC bam bam redacted alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF262XOO/ 1069047208 ENCODE Processing Pipeline bab820074c3466f8950e2e23429e5f8e https://www.encodeproject.org/files/ENCFF771GGC/@@download/ENCFF771GGC.bam released s3://encode-public/2021/01/28/3c48250f-38a2-4025-b4de-ca885bd8724d/ENCFF771GGC.bam ENCODE4 v1.7.0 GRCh38 released low read depth, mixed run types ENCFF175HXD bam bam redacted alignments GRCh38 ENCSR038JBA Control ChIP-seq /human-donors/ENCDO499GAU/ EFO:0007116 UCSF-4 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF432NOT/ 1669203038 ENCODE Processing Pipeline fa5464e87a0390fcc8da7e4bdb72c394 https://www.encodeproject.org/files/ENCFF175HXD/@@download/ENCFF175HXD.bam released s3://encode-public/2021/01/28/3eb270a1-2232-4857-a803-968808561af0/ENCFF175HXD.bam ENCODE4 v1.7.0 GRCh38 released low read depth, mixed run types ENCFF098XVM fastq fastq reads ENCSR825BVU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF060OCT/ 2518158322 Michael Snyder, Stanford 1a602a940bb78dcdc4328434fd94fe47 SRA:SRR14850500 https://www.encodeproject.org/files/ENCFF098XVM/@@download/ENCFF098XVM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/12/ae8f95b6-6ef6-4e9f-a642-418406441e17/ENCFF098XVM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF060OCT fastq fastq reads ENCSR825BVU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF098XVM/ 3077367619 Michael Snyder, Stanford 655bd4536c260686109bd00d8904679e SRA:SRR14850500 https://www.encodeproject.org/files/ENCFF060OCT/@@download/ENCFF060OCT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/12/3e84287e-40de-411d-b4c2-443ce7a5ec05/ENCFF060OCT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF749QMW bam bam unfiltered alignments GRCh38 ENCSR825BVU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF098XVM/, /files/ENCFF060OCT/ 5325342652 ENCODE Processing Pipeline f6348ba5d4ae298c9181c43006ce64ea https://www.encodeproject.org/files/ENCFF749QMW/@@download/ENCFF749QMW.bam released s3://encode-public/2020/05/15/1cba0ce7-deba-4d0c-9a15-048099c379ce/ENCFF749QMW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF569XUQ bam bam alignments GRCh38 ENCSR825BVU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 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SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYC/ 772404335 John Stamatoyannopoulos, UW fa68ac676eda604a99da8e0171a5ea02 https://www.encodeproject.org/files/ENCFF001HXR/@@download/ENCFF001HXR.bam archived s3://encode-public/2011/06/25/c8f53860-57bf-4db9-ae22-9fd8480f05de/ENCFF001HXR.bam Lab custom hg19 archived low read depth, low read length ENCFF001HXS bigWig bigWig raw signal hg19 ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HXR/ 170435009 John Stamatoyannopoulos, UW 0cdbf697949772c3765078ede76554b2 https://www.encodeproject.org/files/ENCFF001HXS/@@download/ENCFF001HXS.bigWig archived s3://encode-public/2011/06/25/ea77de78-98a0-46d1-afb5-f5932fe32c27/ENCFF001HXS.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HYC fastq fastq reads ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 823999912 John Stamatoyannopoulos, UW 46c2f2dc9e3be8eca8d41a2d27977150 https://www.encodeproject.org/files/ENCFF001HYC/@@download/ENCFF001HYC.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/04a49656-3cb3-4f48-957f-c2a8e29dd82d/ENCFF001HYC.fastq.gz low read depth, low read length ENCFF476JOC bam bam unfiltered alignments GRCh38 ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HYC/ 1007532466 ENCODE Processing Pipeline ec4dad89013afca121fa53f129e4903e https://www.encodeproject.org/files/ENCFF476JOC/@@download/ENCFF476JOC.bam released s3://encode-public/2016/08/09/c8cbed5b-342f-48a1-a4e3-576cb7bdba2c/ENCFF476JOC.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF968MUT bam bam alignments GRCh38 ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HYC/ 696154892 ENCODE Processing Pipeline c1450903e7004970d85d142fecade5e1 https://www.encodeproject.org/files/ENCFF968MUT/@@download/ENCFF968MUT.bam released s3://encode-public/2016/08/09/21cd8be2-2d27-41f8-ba1c-e16c1313d806/ENCFF968MUT.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF005RVN bam bam unfiltered alignments hg19 ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HYC/ 1001986432 ENCODE Processing Pipeline f2e0590604cd62f2db9d04c62fb68f66 https://www.encodeproject.org/files/ENCFF005RVN/@@download/ENCFF005RVN.bam released s3://encode-public/2016/11/13/65f298b1-d2df-48b8-b569-621cf2cdbb94/ENCFF005RVN.bam ENCODE3 hg19 archived low read depth, low read length ENCFF328BRW bam bam alignments hg19 ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HYC/ 696244279 ENCODE Processing Pipeline fb63b34fc3b7e38c8e553f30f40bef3d https://www.encodeproject.org/files/ENCFF328BRW/@@download/ENCFF328BRW.bam released s3://encode-public/2016/11/13/020a9503-921f-460f-a1b4-d98671494dd4/ENCFF328BRW.bam ENCODE3 hg19 archived low read depth, low read length ENCFF778XKW bam bam unfiltered alignments GRCh38 ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYC/, /files/ENCFF110MCL/ 985627947 ENCODE Processing Pipeline 2726fccf538c214fcc2ac9a40b91a3b2 https://www.encodeproject.org/files/ENCFF778XKW/@@download/ENCFF778XKW.bam released s3://encode-public/2020/09/03/c3891407-1d65-4e33-b91f-a7b6f24b13a9/ENCFF778XKW.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF303HZT bam bam alignments GRCh38 ENCSR000DXN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYC/, /files/ENCFF110MCL/ 763573608 ENCODE Processing Pipeline 63f8cec1ed01ce13616baaf2c84f469e https://www.encodeproject.org/files/ENCFF303HZT/@@download/ENCFF303HZT.bam released s3://encode-public/2020/09/03/9b5f9a1a-8ec5-4b12-87f9-cd2522dd3b58/ENCFF303HZT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF001HYE bam bam alignments hg19 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYO/ 741794296 John Stamatoyannopoulos, UW 4b263c42794d5aa07e09c5d9bebadde5 https://www.encodeproject.org/files/ENCFF001HYE/@@download/ENCFF001HYE.bam archived s3://encode-public/2011/06/25/71afc2d4-6f46-4504-8b84-bb1e3d7134ab/ENCFF001HYE.bam Lab custom hg19 archived low read depth, low read length ENCFF001HYF bigWig bigWig raw signal hg19 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 /files/ENCFF001HYE/ 163439613 John Stamatoyannopoulos, UW 5d0f0cdc08903fa90835af13a21d64a8 https://www.encodeproject.org/files/ENCFF001HYF/@@download/ENCFF001HYF.bigWig archived s3://encode-public/2011/06/25/09f8de5d-a302-4ec5-9339-326e27ec77f6/ENCFF001HYF.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HYO fastq fastq reads ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 single-ended 787663085 John Stamatoyannopoulos, UW 5e860bca54b605911e762ec79d24f4dd https://www.encodeproject.org/files/ENCFF001HYO/@@download/ENCFF001HYO.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/ed7b2e44-bca6-43be-9b20-4e5e31def84d/ENCFF001HYO.fastq.gz low read depth, low read length ENCFF185CQP bam bam unfiltered alignments GRCh38 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYO/, /files/ENCFF643CGH/ 977583467 ENCODE Processing Pipeline 2398038af697b0c2ec42c7ea026b9820 https://www.encodeproject.org/files/ENCFF185CQP/@@download/ENCFF185CQP.bam released s3://encode-public/2016/08/09/1dd2a437-0223-4ae4-a025-4c4a91a8332b/ENCFF185CQP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF497TEA bam bam alignments GRCh38 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYO/, /files/ENCFF643CGH/ 665660382 ENCODE Processing Pipeline e5559e2a97f127df1eab99c648735081 https://www.encodeproject.org/files/ENCFF497TEA/@@download/ENCFF497TEA.bam released s3://encode-public/2016/08/09/7ff7482b-bb0b-4da7-a59a-f2062bab673a/ENCFF497TEA.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF627YEZ bam bam alignments hg19 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYO/, /files/ENCFF807MUK/ 666301932 ENCODE Processing Pipeline 2854ba4c8a177de4af1e2837a1a07a5c https://www.encodeproject.org/files/ENCFF627YEZ/@@download/ENCFF627YEZ.bam released s3://encode-public/2016/08/23/ba287889-a537-4a7a-b8ef-dd2eab3e408c/ENCFF627YEZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF059EDI bam bam unfiltered alignments hg19 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYO/, /files/ENCFF807MUK/ 972902386 ENCODE Processing Pipeline 794eb93ea34b2be611ce614fbb883e5f https://www.encodeproject.org/files/ENCFF059EDI/@@download/ENCFF059EDI.bam released s3://encode-public/2016/08/23/0f606ed0-0371-4892-87ce-b7673f890a94/ENCFF059EDI.bam ENCODE3 hg19 archived low read depth, low read length ENCFF684KQH bam bam alignments GRCh38 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HYO/ 730694181 ENCODE Processing Pipeline 1f6546f09095019e17e09c8fb897c9d3 https://www.encodeproject.org/files/ENCFF684KQH/@@download/ENCFF684KQH.bam released s3://encode-public/2020/09/03/59464fd6-3ec3-47eb-945a-3e27feb849fb/ENCFF684KQH.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF403WRU bam bam unfiltered alignments GRCh38 ENCSR000DXV Control ChIP-seq /human-donors/ENCDO000ADT/ EFO:0005715 WERI-Rb-1 cell line Homo sapiens DNA 2011-11-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HYO/ 954529128 ENCODE Processing Pipeline c5552b9ee5c921c333f1c01db5b4133e https://www.encodeproject.org/files/ENCFF403WRU/@@download/ENCFF403WRU.bam released s3://encode-public/2020/09/03/55bf4712-62cb-4cdc-a9e1-ed6429fefdfd/ENCFF403WRU.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF152GQB bigWig bigWig read-depth normalized signal dm6 ENCSR877IXV Control ChIP-seq /fly-donors/ENCDO418AAL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31622/'], '@type': ['Target', 'Item'], 'name': 'Nf-YC-dmelanogaster', 'label': 'Nf-YC', '@id': '/targets/Nf-YC-dmelanogaster/', 'title': 'Nf-YC (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a353381-8ca6-47e4-a71b-2bad19d54563', 'status': 'released'} dm3 X 6703001 6724130 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF473GOV/ 17739273 Kevin White, UChicago aab91124522d6582997aa815429d7960 https://www.encodeproject.org/files/ENCFF152GQB/@@download/ENCFF152GQB.bigWig released s3://encode-public/2019/06/18/64d06338-e967-4640-85de-95d1cd2043b6/ENCFF152GQB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF817ELO fastq fastq reads ENCSR877IXV Control ChIP-seq /fly-donors/ENCDO418AAL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31622/'], '@type': ['Target', 'Item'], 'name': 'Nf-YC-dmelanogaster', 'label': 'Nf-YC', '@id': '/targets/Nf-YC-dmelanogaster/', 'title': 'Nf-YC (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a353381-8ca6-47e4-a71b-2bad19d54563', 'status': 'released'} dm3 X 6703001 6724130 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1089689791 Kevin White, UChicago 122e23fcc997e8ab8159a163d8100554 https://www.encodeproject.org/files/ENCFF817ELO/@@download/ENCFF817ELO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/ab4adf58-2ebf-437d-ad0b-10489137fda0/ENCFF817ELO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF473GOV bam bam alignments dm6 ENCSR877IXV Control ChIP-seq /fly-donors/ENCDO418AAL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31622/'], '@type': ['Target', 'Item'], 'name': 'Nf-YC-dmelanogaster', 'label': 'Nf-YC', '@id': '/targets/Nf-YC-dmelanogaster/', 'title': 'Nf-YC (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a353381-8ca6-47e4-a71b-2bad19d54563', 'status': 'released'} dm3 X 6703001 6724130 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF817ELO/, /files/ENCFF479RCH/ 1468810261 Kevin White, UChicago 62bec48e04fa69e9188249e321f00d15 https://www.encodeproject.org/files/ENCFF473GOV/@@download/ENCFF473GOV.bam released s3://encode-public/2019/06/18/8c5fdb73-780d-4653-b067-8ac72219e8d0/ENCFF473GOV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF276WMC bigWig bigWig signal of unique reads dm6 ENCSR877IXV Control ChIP-seq /fly-donors/ENCDO418AAL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31622/'], '@type': ['Target', 'Item'], 'name': 'Nf-YC-dmelanogaster', 'label': 'Nf-YC', '@id': '/targets/Nf-YC-dmelanogaster/', 'title': 'Nf-YC (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a353381-8ca6-47e4-a71b-2bad19d54563', 'status': 'released'} dm3 X 6703001 6724130 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF473GOV/ 17772314 Kevin White, UChicago f178ee742507720208a61483dc093353 https://www.encodeproject.org/files/ENCFF276WMC/@@download/ENCFF276WMC.bigWig released s3://encode-public/2019/06/18/249854ba-7e62-43fa-9672-7720527ff002/ENCFF276WMC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000QTE bigWig bigWig raw signal hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 7923025 Richard Myers, HAIB 6ad94daba0466b9c41db4d60bdf3fbd1 https://www.encodeproject.org/files/ENCFF000QTE/@@download/ENCFF000QTE.bigWig archived s3://encode-public/2012/01/23/34bbd118-b0da-47e4-94bf-1724d87aa36b/ENCFF000QTE.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF000QTF bam bam alignments hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000QTU/ 587885669 Richard Myers, HAIB 11394bda528f5bae98126ef39b6313f7 https://www.encodeproject.org/files/ENCFF000QTF/@@download/ENCFF000QTF.bam archived s3://encode-public/2012/01/23/d17f76bd-66d4-4fbf-bce2-a1474e03ff03/ENCFF000QTF.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF000QTG bigWig bigWig raw signal hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 54970783 Richard Myers, HAIB d29a034e3922a7b640c8fe9de5291bc4 https://www.encodeproject.org/files/ENCFF000QTG/@@download/ENCFF000QTG.bigWig archived s3://encode-public/2012/01/23/6e610601-4489-42c3-97c0-23732828cea5/ENCFF000QTG.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF000QTH bam bam alignments hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QTJ/ 1010049832 Richard Myers, HAIB 57409e8eee9f5cf08ebc2dd8c85fea18 https://www.encodeproject.org/files/ENCFF000QTH/@@download/ENCFF000QTH.bam archived s3://encode-public/2012/01/23/5cd84388-b99f-40c7-939b-70feadf24bd9/ENCFF000QTH.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF000QTJ fastq fastq reads ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 703242278 Richard Myers, HAIB ce7e9bd302ceb6a13215bbc38be822cc https://www.encodeproject.org/files/ENCFF000QTJ/@@download/ENCFF000QTJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/df396279-103c-4745-b3d0-c30ce8be634d/ENCFF000QTJ.fastq.gz mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF000QTU fastq fastq reads ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 3776982955 Richard Myers, HAIB ecb3b6c5cedfe1468d2defadae640c19 https://www.encodeproject.org/files/ENCFF000QTU/@@download/ENCFF000QTU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/1cb0db1e-33bc-4ecb-b0a7-421d799433bb/ENCFF000QTU.fastq.gz mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF893HUW bam bam unfiltered alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QTJ/, /files/ENCFF643CGH/ 854814954 ENCODE Processing Pipeline 0d9cbb894b2a9a6155600e3b6d11dd29 https://www.encodeproject.org/files/ENCFF893HUW/@@download/ENCFF893HUW.bam released s3://encode-public/2016/10/26/0fe80d71-4dd5-4f92-85ff-d81e2a3c3e69/ENCFF893HUW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF349WAO bam bam alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QTJ/, /files/ENCFF643CGH/ 390002317 ENCODE Processing Pipeline ca2efb5d8fb026b9e694839905410c1f https://www.encodeproject.org/files/ENCFF349WAO/@@download/ENCFF349WAO.bam released s3://encode-public/2016/10/26/b02fe54a-29aa-4076-aecf-5a6c61a2b61d/ENCFF349WAO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF904AFA bam bam unfiltered alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000QTU/ 3774624581 ENCODE Processing Pipeline cc810bc6f06e4b4f0b07f76b53745f92 https://www.encodeproject.org/files/ENCFF904AFA/@@download/ENCFF904AFA.bam released s3://encode-public/2016/10/26/654dcf30-9e95-45ee-9684-030d690a1b3a/ENCFF904AFA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF270FBL bam bam alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000QTU/ 629487573 ENCODE Processing Pipeline 3e4f7943206885edb581ec78e5a33780 https://www.encodeproject.org/files/ENCFF270FBL/@@download/ENCFF270FBL.bam released s3://encode-public/2016/10/26/1089a2d0-4702-4fa8-b81e-9609a801a0f0/ENCFF270FBL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF916WZA bam bam unfiltered alignments hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QTJ/, /files/ENCFF807MUK/ 853045005 ENCODE Processing Pipeline d446e5dad8f235136ce410423d50ce6e https://www.encodeproject.org/files/ENCFF916WZA/@@download/ENCFF916WZA.bam released s3://encode-public/2016/11/13/74cb01c2-7dcd-4ad8-8f9b-0af48eadaf17/ENCFF916WZA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF630OSD bam bam unfiltered alignments hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000QTU/ 3764076647 ENCODE Processing Pipeline 31cd7832b690ff7441b8d6d17abde416 https://www.encodeproject.org/files/ENCFF630OSD/@@download/ENCFF630OSD.bam released s3://encode-public/2016/11/13/cf9c4c92-16d0-47a2-8d95-d42458721447/ENCFF630OSD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF134TNE bam bam alignments hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QTJ/, /files/ENCFF807MUK/ 390084928 ENCODE Processing Pipeline 933bd2b7d210dbac03be737c562e25e1 https://www.encodeproject.org/files/ENCFF134TNE/@@download/ENCFF134TNE.bam released s3://encode-public/2016/11/13/a7cf4735-804e-49ae-aaff-5af54293255e/ENCFF134TNE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF248GJG bam bam alignments hg19 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000QTU/ 629622214 ENCODE Processing Pipeline aad44113948b136c4dd34097196fe585 https://www.encodeproject.org/files/ENCFF248GJG/@@download/ENCFF248GJG.bam released s3://encode-public/2016/11/13/bde838e8-4490-43c0-8695-26f62227528b/ENCFF248GJG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF855KJT bam bam unfiltered alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000QTJ/ 843510337 ENCODE Processing Pipeline ab80aacdad6c6bd71790dfda797b7210 https://www.encodeproject.org/files/ENCFF855KJT/@@download/ENCFF855KJT.bam released s3://encode-public/2020/10/28/be41b6eb-5db2-461e-b0e8-d9d74d2c3f73/ENCFF855KJT.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF207GUK bam bam unfiltered alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000QTU/ 3744962075 ENCODE Processing Pipeline 71ac0018c5dc3e7c2e7a05952e423b9c https://www.encodeproject.org/files/ENCFF207GUK/@@download/ENCFF207GUK.bam released s3://encode-public/2020/10/28/9912ff71-1aab-439d-b3d4-cd3046841e03/ENCFF207GUK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF873AGD bam bam alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000QTJ/ 423033615 ENCODE Processing Pipeline 757445051176cc214defbefa5996a519 https://www.encodeproject.org/files/ENCFF873AGD/@@download/ENCFF873AGD.bam released s3://encode-public/2020/10/28/89fad019-8f2c-495f-80b2-1c7867de1a45/ENCFF873AGD.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF116MBB bam bam alignments GRCh38 ENCSR000BIN Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000QTU/ 677792792 ENCODE Processing Pipeline c6df085eff70db29e53db32a831b16b5 https://www.encodeproject.org/files/ENCFF116MBB/@@download/ENCFF116MBB.bam released s3://encode-public/2020/10/28/3d996edd-3e62-4b16-a3a9-8c6f346254e0/ENCFF116MBB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length poor library complexity, severe bottlenecking, insufficient read depth ENCFF801QTZ fastq fastq reads ENCSR320AIQ Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 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characterization ENCFF153BXZ bigWig bigWig signal of unique reads dm3 ENCSR320AIQ Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714PTR/ 15374220 Kevin White, UChicago 123e8d9816d4887602ebadd66c469a73 https://www.encodeproject.org/files/ENCFF153BXZ/@@download/ENCFF153BXZ.bigWig released s3://encode-public/2015/10/21/7d1e927d-aa82-4f28-8de3-dbe7fb976e76/ENCFF153BXZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF714PTR bam bam alignments dm3 ENCSR320AIQ Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF801QTZ/ 1474841619 Kevin White, UChicago cb7a105bc0f3417c009cb18ef164c3ae https://www.encodeproject.org/files/ENCFF714PTR/@@download/ENCFF714PTR.bam released s3://encode-public/2015/10/21/325f2fe8-2c7a-4b3d-88b5-324da0f91bda/ENCFF714PTR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF341GLX bigWig bigWig read-depth normalized signal dm3 ENCSR320AIQ Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila 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whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 'released'} dm3 X 17638339 17731939 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF801QTZ/ 1470463969 Kevin White, UChicago a7aea00c148b9862d329ee8249640892 https://www.encodeproject.org/files/ENCFF614NLA/@@download/ENCFF614NLA.bam released s3://encode-public/2016/06/24/63cd5dbd-7b91-4db7-95c4-dcdbd6ca291e/ENCFF614NLA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF442WNM bigWig bigWig signal of unique reads dm6 ENCSR320AIQ Control ChIP-seq /fly-donors/ENCDO348AEN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32758/'], '@type': ['Target', 'Item'], 'name': 'OdsH-dmelanogaster', 'label': 'OdsH', '@id': '/targets/OdsH-dmelanogaster/', 'title': 'OdsH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1d7c9a78-1473-4cf7-9cfe-7d096e4ca5d8', 'status': 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/files/ENCFF643CGH/, /files/ENCFF628NJR/ 844195996 ENCODE Processing Pipeline cba069d8368f545c3ca2fa4198d28a8a https://www.encodeproject.org/files/ENCFF879WYG/@@download/ENCFF879WYG.bam released s3://encode-public/2016/12/19/4e09a831-d0ed-4aa2-9d3d-5d684a3b220c/ENCFF879WYG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF062UWV bam bam alignments hg19 ENCSR113XPE Control ChIP-seq /human-donors/ENCDO176AAI/ UBERON:0002240 spinal cord tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF088JGL/, /files/ENCFF807MUK/, /files/ENCFF628NJR/ 844489968 ENCODE Processing Pipeline 173357775dc4e218629d5390914ee641 https://www.encodeproject.org/files/ENCFF062UWV/@@download/ENCFF062UWV.bam released s3://encode-public/2016/12/19/f87b5856-3ef8-46e9-86fc-8fae5ceff021/ENCFF062UWV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF975MQF bam bam unfiltered alignments GRCh38 ENCSR113XPE Control ChIP-seq /human-donors/ENCDO176AAI/ UBERON:0002240 spinal cord tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF088JGL/, /files/ENCFF110MCL/, /files/ENCFF628NJR/ 1166235120 ENCODE Processing Pipeline 1f47464d03e084c794dd78a6afa0fab3 https://www.encodeproject.org/files/ENCFF975MQF/@@download/ENCFF975MQF.bam released s3://encode-public/2020/10/08/7b305f6d-efca-498e-87e6-3704c3c41556/ENCFF975MQF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF057YBN bam bam alignments GRCh38 ENCSR113XPE Control ChIP-seq /human-donors/ENCDO176AAI/ UBERON:0002240 spinal cord tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF088JGL/, /files/ENCFF110MCL/, /files/ENCFF628NJR/ 918820557 ENCODE Processing Pipeline 83e95cd7b3c487f18893732e545537af https://www.encodeproject.org/files/ENCFF057YBN/@@download/ENCFF057YBN.bam released s3://encode-public/2020/10/08/7bd95f2c-e9d5-4c67-b8ee-40b919c8e8a9/ENCFF057YBN.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF295PVW fastq fastq reads ENCSR989EAA Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 808078693 Kevin White, UChicago 08651b19baaf99ec9f1d026baede7ddd https://www.encodeproject.org/files/ENCFF295PVW/@@download/ENCFF295PVW.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/15/3d141299-f286-4856-895d-db38750f0494/ENCFF295PVW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF303PXP bam bam alignments dm3 ENCSR989EAA Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF059UHX/, /files/ENCFF295PVW/ 1054353844 Kevin White, UChicago a3f7d17e8b835dcdbb03759689d5007b https://www.encodeproject.org/files/ENCFF303PXP/@@download/ENCFF303PXP.bam released s3://encode-public/2017/06/18/cee13970-4c8b-4bbc-9daf-149ec45a6495/ENCFF303PXP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF077PZY bam bam alignments dm6 ENCSR989EAA Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF479RCH/, /files/ENCFF295PVW/ 1047848882 Kevin White, UChicago f5fb3b5ba2c87639c76bb0bac95af184 https://www.encodeproject.org/files/ENCFF077PZY/@@download/ENCFF077PZY.bam released s3://encode-public/2017/06/28/cba1b897-4871-4ae7-a561-b85ba76d1983/ENCFF077PZY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF096IDB bigWig bigWig signal of unique reads dm3 ENCSR989EAA Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF303PXP/ 15314689 Kevin White, UChicago a42a90c69dededf77ed3c35d9ae1252f https://www.encodeproject.org/files/ENCFF096IDB/@@download/ENCFF096IDB.bigWig released s3://encode-public/2017/06/29/d6dbda36-484c-43cb-a4c9-c1bc08a7842b/ENCFF096IDB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF742HDA bigWig bigWig read-depth normalized signal dm3 ENCSR989EAA Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF303PXP/ 15313457 Kevin White, UChicago f91f86e778ee23ac40f1c67945548dad https://www.encodeproject.org/files/ENCFF742HDA/@@download/ENCFF742HDA.bigWig released s3://encode-public/2017/06/29/b1ec8ca2-b8c8-4f36-982e-a65bdcf94e7f/ENCFF742HDA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF323BGY bigWig bigWig signal of unique reads dm6 ENCSR989EAA Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF077PZY/ 17518810 Kevin White, UChicago 00ffd6311a14ce3083e57d10c0951946 https://www.encodeproject.org/files/ENCFF323BGY/@@download/ENCFF323BGY.bigWig released s3://encode-public/2017/07/03/5c1fffe8-60ee-48f1-bbfb-98e6c67bb01c/ENCFF323BGY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF169AEI bigWig bigWig read-depth normalized signal dm6 ENCSR989EAA Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF077PZY/ 17515028 Kevin White, UChicago 68c77a8d21a50ede4e3b7349ac403437 https://www.encodeproject.org/files/ENCFF169AEI/@@download/ENCFF169AEI.bigWig released s3://encode-public/2017/07/03/e2a18101-d5b4-413f-a762-3c173e6d64e9/ENCFF169AEI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000NFH bam bam alignments hg19 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000NFM/ 513605820 Richard Myers, HAIB 8214b68bc31425830e32109a31d2ee1c https://www.encodeproject.org/files/ENCFF000NFH/@@download/ENCFF000NFH.bam archived s3://encode-public/2012/01/23/b67fe448-3869-4d41-a376-e767c4584f8a/ENCFF000NFH.bam Lab custom hg19 archived low read depth, low read length ENCFF000NFI bigWig bigWig raw signal hg19 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 6970355 Richard Myers, HAIB 33f3ec3e488ba4390742e7c4f24587e5 https://www.encodeproject.org/files/ENCFF000NFI/@@download/ENCFF000NFI.bigWig archived s3://encode-public/2012/01/23/90bd939f-b046-4e7d-9d56-cd4737f5cbfa/ENCFF000NFI.bigWig Lab custom hg19 archived low read depth, low read length ENCFF000NFM fastq fastq reads ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 572652422 Richard Myers, HAIB c1e37869568660e84b6a6fbe07b82f8c https://www.encodeproject.org/files/ENCFF000NFM/@@download/ENCFF000NFM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/d9eb1a50-ee2d-4128-bae0-f77f38508398/ENCFF000NFM.fastq.gz low read depth, low read length ENCFF996WPX bam bam unfiltered alignments GRCh38 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000NFM/ 772581972 ENCODE Processing Pipeline db2793344c2c4d2f552db0d5712ebc04 https://www.encodeproject.org/files/ENCFF996WPX/@@download/ENCFF996WPX.bam released s3://encode-public/2016/10/26/a90fe3fc-5c75-42bb-a9d7-7d82ed11139c/ENCFF996WPX.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF250FLP bam bam alignments GRCh38 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000NFM/ 409973939 ENCODE Processing Pipeline 83ec42e6c3a309910ab7b37992b6eb05 https://www.encodeproject.org/files/ENCFF250FLP/@@download/ENCFF250FLP.bam released s3://encode-public/2016/10/26/27a409b0-e3d3-4be4-a926-8299b9e4b795/ENCFF250FLP.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF861QOW bam bam unfiltered alignments hg19 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000NFM/ 769787455 ENCODE Processing Pipeline 13570d64efcfa7327ff05f57045b86a2 https://www.encodeproject.org/files/ENCFF861QOW/@@download/ENCFF861QOW.bam released s3://encode-public/2016/11/13/fd802b93-8bd3-4ea6-8932-758d29281e28/ENCFF861QOW.bam ENCODE3 hg19 archived low read depth, low read length ENCFF133QSS bam bam alignments hg19 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000NFM/ 410051513 ENCODE Processing Pipeline 977d3e75ffe2edd3155bc5280b903960 https://www.encodeproject.org/files/ENCFF133QSS/@@download/ENCFF133QSS.bam released s3://encode-public/2016/11/13/d80c1022-cef6-4d53-a52a-75981473b10e/ENCFF133QSS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF542INY bam bam unfiltered alignments GRCh38 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NFM/ 755488868 ENCODE Processing Pipeline c7f7dba6b139ecd913a1db6d2c6c7796 https://www.encodeproject.org/files/ENCFF542INY/@@download/ENCFF542INY.bam released s3://encode-public/2020/09/03/5d0410fb-59f5-4baf-ae3d-03cd3d804a15/ENCFF542INY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF142IDC bam bam alignments GRCh38 ENCSR000BNB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NFM/ 453308646 ENCODE Processing Pipeline b5610b6038e898147c848f6302b8df67 https://www.encodeproject.org/files/ENCFF142IDC/@@download/ENCFF142IDC.bam released s3://encode-public/2020/09/03/9916d267-2875-4829-b8ab-a3a986dfed12/ENCFF142IDC.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF000RJI bam bam alignments hg19 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000RJV/ 1120901682 Richard Myers, HAIB 3d51dd7b379dddc6644ac28b77ffc9b4 https://www.encodeproject.org/files/ENCFF000RJI/@@download/ENCFF000RJI.bam archived s3://encode-public/2012/01/23/56335a76-f2c0-42ff-906a-2b0f2341fc02/ENCFF000RJI.bam Lab custom hg19 archived low read length ENCFF000RJK bigWig bigWig raw signal hg19 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 2467959 Richard Myers, HAIB b19d3ea9bb4d24a74833b0d417ce04e8 https://www.encodeproject.org/files/ENCFF000RJK/@@download/ENCFF000RJK.bigWig archived s3://encode-public/2012/01/23/f259a773-6efa-4260-879a-a75156af98b0/ENCFF000RJK.bigWig Lab custom hg19 archived low read length ENCFF000RJV fastq fastq reads ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1263829713 Richard Myers, HAIB e8ba33d2a8377bb11a7fc848943e341f https://www.encodeproject.org/files/ENCFF000RJV/@@download/ENCFF000RJV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/3e273210-3e97-4796-958f-ddd01dfd62fc/ENCFF000RJV.fastq.gz low read length ENCFF554CET bam bam unfiltered alignments GRCh38 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RJV/ 1726478304 ENCODE Processing Pipeline e9bfabde298b32c4761e4444023c5a14 https://www.encodeproject.org/files/ENCFF554CET/@@download/ENCFF554CET.bam released s3://encode-public/2016/10/26/9eb8b84f-bc15-4628-9eca-9bbe12cdc420/ENCFF554CET.bam ENCODE3 GRCh38 archived low read length ENCFF503VFG bam bam alignments GRCh38 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000RJV/ 1031447880 ENCODE Processing Pipeline ba686fd81e6c2481839059c31db6d800 https://www.encodeproject.org/files/ENCFF503VFG/@@download/ENCFF503VFG.bam released s3://encode-public/2016/10/26/43749d39-b7fb-4f46-a150-2e288caa0379/ENCFF503VFG.bam ENCODE3 GRCh38 archived low read length ENCFF006VAK bam bam unfiltered alignments hg19 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RJV/ 1715295632 ENCODE Processing Pipeline 0db6b27407ed09286b5626272772b61d https://www.encodeproject.org/files/ENCFF006VAK/@@download/ENCFF006VAK.bam released s3://encode-public/2016/11/13/e7af8cb6-4dbe-4f9f-9b39-61e6a5280c5a/ENCFF006VAK.bam ENCODE3 hg19 archived low read length ENCFF960JYT bam bam alignments hg19 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000RJV/ 1031700635 ENCODE Processing Pipeline 2c6741cee28ed0049d6143cd8faf5724 https://www.encodeproject.org/files/ENCFF960JYT/@@download/ENCFF960JYT.bam released s3://encode-public/2016/11/13/126865eb-c979-442b-b624-a0c61a3f2d5d/ENCFF960JYT.bam ENCODE3 hg19 archived low read length ENCFF653RNQ bam bam unfiltered alignments GRCh38 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000RJV/ 1701560079 ENCODE Processing Pipeline a5aa502ca1db8a9c6347b41dd49decb9 https://www.encodeproject.org/files/ENCFF653RNQ/@@download/ENCFF653RNQ.bam released s3://encode-public/2020/09/03/5de16643-5d58-420d-af05-13e513da3bb8/ENCFF653RNQ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF704ZBT bam bam alignments GRCh38 ENCSR000BMP Control ChIP-seq /human-donors/ENCDO000ABA/ EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000RJV/ 1129900269 ENCODE Processing Pipeline 434b19dcd354d2ad008896ad1a4350e1 https://www.encodeproject.org/files/ENCFF704ZBT/@@download/ENCFF704ZBT.bam released s3://encode-public/2020/09/03/3f67d3b8-9ee6-4c4a-bb4a-4c960ef4f26f/ENCFF704ZBT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000QEI bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000QFL/ 1203578599 Richard Myers, HAIB 3ff15493e7f139d2ec21042a7890adf9 https://www.encodeproject.org/files/ENCFF000QEI/@@download/ENCFF000QEI.bam archived s3://encode-public/2012/01/23/bac50df7-8d98-4877-ad39-97cd2dde1ac8/ENCFF000QEI.bam Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QEK bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QFS/ 2158501433 Richard Myers, HAIB 61131f9726d640aeacc9efff3972b705 https://www.encodeproject.org/files/ENCFF000QEK/@@download/ENCFF000QEK.bam archived s3://encode-public/2012/01/23/7c079cd9-aa83-412c-ad25-6c910efbbfea/ENCFF000QEK.bam Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QEL bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 /files/ENCFF000QEU/ 1240881660 Richard Myers, HAIB 336a79be5793b0972db9e8c8f0be41a6 https://www.encodeproject.org/files/ENCFF000QEL/@@download/ENCFF000QEL.bam archived s3://encode-public/2012/01/23/570d2371-0284-478d-aed9-cf708e958e41/ENCFF000QEL.bam Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QEM bigWig bigWig raw signal hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 /files/ENCFF000QEK/ 42255894 Richard Myers, HAIB 0ada227a3484493f487690ba536107b9 https://www.encodeproject.org/files/ENCFF000QEM/@@download/ENCFF000QEM.bigWig archived s3://encode-public/2012/01/23/b9a28e43-7091-4393-aee7-d92b55ec545f/ENCFF000QEM.bigWig Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QEN bigWig bigWig raw signal hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 17196304 Richard Myers, HAIB 3011c9ebe84e441c29a8d7a83d068664 https://www.encodeproject.org/files/ENCFF000QEN/@@download/ENCFF000QEN.bigWig archived s3://encode-public/2012/01/23/998ff2f5-6d43-450b-8c6e-152382e5bf4e/ENCFF000QEN.bigWig Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QEO bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000QET/ 3025297784 Richard Myers, HAIB 2b7229273079a80530d5588899a21220 https://www.encodeproject.org/files/ENCFF000QEO/@@download/ENCFF000QEO.bam archived s3://encode-public/2012/01/23/a8971265-582b-4da2-81ac-23314e8f0bec/ENCFF000QEO.bam Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QEP bigWig bigWig raw signal hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 3516754 Richard Myers, HAIB b57e305c0ade7dbdc17bb1ee6c57948d https://www.encodeproject.org/files/ENCFF000QEP/@@download/ENCFF000QEP.bigWig archived s3://encode-public/2012/01/23/a565b7fb-bab4-4e60-81c1-21e738cb4a55/ENCFF000QEP.bigWig Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QEQ bigWig bigWig raw signal hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 551727 Richard Myers, HAIB ffff1daec20198d545a732f96230a657 https://www.encodeproject.org/files/ENCFF000QEQ/@@download/ENCFF000QEQ.bigWig archived s3://encode-public/2012/01/23/44012239-8f65-40ed-b9ca-5bb332d5c4c4/ENCFF000QEQ.bigWig Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000QET fastq fastq reads ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 single-ended 1768691268 Richard Myers, HAIB c234d24eff2770c70e0e170884c06ac3 https://www.encodeproject.org/files/ENCFF000QET/@@download/ENCFF000QET.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/c1ead89f-5175-4ede-9863-05040cf681ef/ENCFF000QET.fastq.gz low read depth, low read length insufficient read depth ENCFF000QEU fastq fastq reads ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 single-ended 1361865047 Richard Myers, HAIB fe2781ea65c29aa06110d603e556e179 https://www.encodeproject.org/files/ENCFF000QEU/@@download/ENCFF000QEU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/5fb3d95c-821e-4892-aa3e-7def878b4317/ENCFF000QEU.fastq.gz low read depth, low read length insufficient read depth ENCFF000QFL fastq fastq reads ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 544022201 Richard Myers, HAIB 764dbd53c5c79d84b6527335cd3f6f87 https://www.encodeproject.org/files/ENCFF000QFL/@@download/ENCFF000QFL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/5015f1f2-d55a-4073-a427-0694a5de2846/ENCFF000QFL.fastq.gz low read depth, low read length insufficient read depth ENCFF000QFS fastq fastq reads ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 single-ended 1311405003 Richard Myers, HAIB 725675e29d5dd2aeb68c323b84d40fca https://www.encodeproject.org/files/ENCFF000QFS/@@download/ENCFF000QFS.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2012/01/23/0d6b0d4b-de8c-4e22-8402-342f5caea997/ENCFF000QFS.fastq.gz low read depth, low read length insufficient read depth ENCFF395PSG bam bam alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000QET/, /files/ENCFF110MCL/ 1129581004 ENCODE Processing Pipeline 7266860cbe13d9ab835c1ca3120fae51 https://www.encodeproject.org/files/ENCFF395PSG/@@download/ENCFF395PSG.bam released s3://encode-public/2020/09/16/86d0f00f-23f5-4278-b985-a365c39c1c6c/ENCFF395PSG.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF706PYR bam bam unfiltered alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000QFL/, /files/ENCFF110MCL/ 685093676 ENCODE Processing Pipeline 02d688e6f5b6caeb0be9a9a5e35c0216 https://www.encodeproject.org/files/ENCFF706PYR/@@download/ENCFF706PYR.bam released s3://encode-public/2020/09/16/c64ab0ef-b326-4383-a13f-8d361f2fbbbd/ENCFF706PYR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF579FHH bam bam alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000QEU/ 949072155 ENCODE Processing Pipeline f8edf18bb0ff8c516ba002c4c4804861 https://www.encodeproject.org/files/ENCFF579FHH/@@download/ENCFF579FHH.bam released s3://encode-public/2020/09/16/c3b0bd98-d365-416f-b263-91387bd8bc0a/ENCFF579FHH.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF812TGW bam bam alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000QFL/ 397718515 ENCODE Processing Pipeline 0adce0426a64c4ffb879dec5004d3c63 https://www.encodeproject.org/files/ENCFF812TGW/@@download/ENCFF812TGW.bam released s3://encode-public/2016/08/05/586ec496-bd73-44a9-9348-0a5e07da31cd/ENCFF812TGW.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF234NVU bam bam alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 /files/ENCFF000QEU/, /files/ENCFF643CGH/ 860935886 ENCODE Processing Pipeline c6da19b28fbc146c3db03fcb5fee09fe https://www.encodeproject.org/files/ENCFF234NVU/@@download/ENCFF234NVU.bam released s3://encode-public/2016/08/05/676c79d7-f24b-43aa-9436-e3a8225d36cd/ENCFF234NVU.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF913HVS bam bam alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000QET/, /files/ENCFF643CGH/ 1024734100 ENCODE Processing Pipeline b6c2a6ca2863e391cdc1c3dcbb8a779a https://www.encodeproject.org/files/ENCFF913HVS/@@download/ENCFF913HVS.bam released s3://encode-public/2016/08/05/f8ffaa53-c8c4-49f4-9b70-d95e515f32b7/ENCFF913HVS.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF382XSA bam bam alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF643CGH/, /files/ENCFF000QFS/ 1109444266 ENCODE Processing Pipeline 895607f4a6ef9306269c24951be825a5 https://www.encodeproject.org/files/ENCFF382XSA/@@download/ENCFF382XSA.bam archived s3://encode-public/2016/08/05/3167156e-7b33-4b90-95ce-075e34988293/ENCFF382XSA.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF927ARR bam bam unfiltered alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000QFL/ 700628822 ENCODE Processing Pipeline e678ec752811925702cdd1c96bd17608 https://www.encodeproject.org/files/ENCFF927ARR/@@download/ENCFF927ARR.bam released s3://encode-public/2016/08/05/7ad27bb5-ddc5-4531-ab61-af8d538f3535/ENCFF927ARR.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF878FCD bam bam unfiltered alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 /files/ENCFF000QEU/, /files/ENCFF643CGH/ 1780709415 ENCODE Processing Pipeline 9480554cb4a8d5b9f924d47ce31924e9 https://www.encodeproject.org/files/ENCFF878FCD/@@download/ENCFF878FCD.bam released s3://encode-public/2016/08/05/cdb1a6e4-57bb-4422-aa4f-d46f8873b151/ENCFF878FCD.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF836HYK bam bam unfiltered alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000QET/, /files/ENCFF643CGH/ 2243870205 ENCODE Processing Pipeline 77c36b186c57fb9b84583dd0e951c387 https://www.encodeproject.org/files/ENCFF836HYK/@@download/ENCFF836HYK.bam released s3://encode-public/2016/08/05/1838eab7-daa8-40f2-a724-2819621f8669/ENCFF836HYK.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF896VVC bam bam unfiltered alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF643CGH/, /files/ENCFF000QFS/ 2184092946 ENCODE Processing Pipeline c6ce0c2198ec9c8e9040cd13b3549c11 https://www.encodeproject.org/files/ENCFF896VVC/@@download/ENCFF896VVC.bam archived s3://encode-public/2016/08/05/d1c7a38f-0825-4825-a03c-a600524d7bd4/ENCFF896VVC.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF390HVR bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000QFL/ 397920319 ENCODE Processing Pipeline 87c57afa0bbf2c96a74dba480e154df0 https://www.encodeproject.org/files/ENCFF390HVR/@@download/ENCFF390HVR.bam released s3://encode-public/2017/07/08/85cf8091-83c1-4849-8691-03335da42e2e/ENCFF390HVR.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF233VUJ bam bam unfiltered alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000QFL/ 697969715 ENCODE Processing Pipeline 2c348e1ce4b7fc033d744c63d4950a14 https://www.encodeproject.org/files/ENCFF233VUJ/@@download/ENCFF233VUJ.bam released s3://encode-public/2017/07/08/8bbd7540-5d34-4220-a503-66893d49394d/ENCFF233VUJ.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF585PFH bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 /files/ENCFF000QEU/, /files/ENCFF807MUK/ 861269527 ENCODE Processing Pipeline 65c3f0262fdd932eebc58ef40964f218 https://www.encodeproject.org/files/ENCFF585PFH/@@download/ENCFF585PFH.bam released s3://encode-public/2017/07/08/d6fe6d3a-d435-4611-8bcb-021ce3eaac30/ENCFF585PFH.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF744CBW bam bam unfiltered alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF807MUK/, /files/ENCFF000QFS/ 2178431619 ENCODE Processing Pipeline 38f5d8321096a2f25ef6f5a62e6f677d https://www.encodeproject.org/files/ENCFF744CBW/@@download/ENCFF744CBW.bam archived s3://encode-public/2017/07/08/e54d0f78-2940-4529-ac96-13ad74252953/ENCFF744CBW.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF290XFR bam bam unfiltered alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 /files/ENCFF000QEU/, /files/ENCFF807MUK/ 1772945075 ENCODE Processing Pipeline e93a0a68a7f23e6dc24725758458f0f7 https://www.encodeproject.org/files/ENCFF290XFR/@@download/ENCFF290XFR.bam released s3://encode-public/2017/07/08/f18929f4-f538-4378-ae80-9939458fd86d/ENCFF290XFR.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF103OUB bam bam unfiltered alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000QET/, /files/ENCFF807MUK/ 2235422812 ENCODE Processing Pipeline ea06c0f17aa81f283ed8eca0d11345a0 https://www.encodeproject.org/files/ENCFF103OUB/@@download/ENCFF103OUB.bam released s3://encode-public/2017/07/08/6fdff7be-9dc0-4e3f-81e2-e1dd3f623273/ENCFF103OUB.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF701KUD bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000QET/, /files/ENCFF807MUK/ 1025110674 ENCODE Processing Pipeline 78469682915149cc52d876dad83f8539 https://www.encodeproject.org/files/ENCFF701KUD/@@download/ENCFF701KUD.bam released s3://encode-public/2017/07/08/f8722705-eed2-4636-a22a-af28a3f3c14c/ENCFF701KUD.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF021YJN bam bam alignments hg19 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 25 /files/ENCFF807MUK/, /files/ENCFF000QFS/ 1109017430 ENCODE Processing Pipeline 3d7506bd1981514f50b938b233e16176 https://www.encodeproject.org/files/ENCFF021YJN/@@download/ENCFF021YJN.bam archived s3://encode-public/2017/07/08/b111d431-a25c-400c-85db-9853fb1d778b/ENCFF021YJN.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF260ORT bam bam unfiltered alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 3 3_1 36 /files/ENCFF000QET/, /files/ENCFF110MCL/ 2238010360 ENCODE Processing Pipeline 2c68417ba4b49af874ccdb04f4776732 https://www.encodeproject.org/files/ENCFF260ORT/@@download/ENCFF260ORT.bam released s3://encode-public/2020/09/16/4deb695b-c473-48c3-b4ac-b2d97872aca4/ENCFF260ORT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF914UOD bam bam unfiltered alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 4 4_1 36 /files/ENCFF110MCL/, /files/ENCFF000QEU/ 1770863939 ENCODE Processing Pipeline a7dc947875e66a91ddff560487680ab3 https://www.encodeproject.org/files/ENCFF914UOD/@@download/ENCFF914UOD.bam released s3://encode-public/2020/09/16/bb83b5a4-7e9c-4fa9-97c4-52ed20804a0f/ENCFF914UOD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF939RUV bam bam alignments GRCh38 ENCSR000BGG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000QFL/, /files/ENCFF110MCL/ 430067861 ENCODE Processing Pipeline b2e6a998161a2d83ca901c379d115137 https://www.encodeproject.org/files/ENCFF939RUV/@@download/ENCFF939RUV.bam released s3://encode-public/2020/09/16/39a80f76-5b06-4a6e-8589-121d5371334f/ENCFF939RUV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF001MQN bam bam alignments mm9 ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRP/ 1494533206 Ross Hardison, PennState 9ad6e809aa9b49722c16633bc3ccf337 https://www.encodeproject.org/files/ENCFF001MQN/@@download/ENCFF001MQN.bam archived s3://encode-public/2011/11/05/88fa2b9d-fb8d-4b4a-87ae-dbc4085516d1/ENCFF001MQN.bam Lab custom mm9 archived low read length ENCFF001MRD bigWig bigWig signal mm9 ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 2407375452 Ross Hardison, PennState 4df9d8ccc5210e9295a23cbcfdca705d https://www.encodeproject.org/files/ENCFF001MRD/@@download/ENCFF001MRD.bigWig archived s3://encode-public/2011/11/05/e47836bf-bfc7-43be-ae0f-0c6323d83710/ENCFF001MRD.bigWig Lab custom mm9 archived low read length ENCFF001MRP fastq fastq reads ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 48 single-ended 1216983014 Ross Hardison, PennState 8496177964640352663cacdbb3681e70 https://www.encodeproject.org/files/ENCFF001MRP/@@download/ENCFF001MRP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2011/11/05/5275f484-c120-4df5-b413-72a9cdacd2f1/ENCFF001MRP.fastq.gz low read length ENCFF502BXA bam bam unfiltered alignments mm10-minimal ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRP/ 1571654363 J. Michael Cherry, Stanford e9cbe097280454580b64d00da05721c1 https://www.encodeproject.org/files/ENCFF502BXA/@@download/ENCFF502BXA.bam archived s3://encode-public/2015/02/04/6d3ef3b3-9de1-4d43-9eda-ebe2126212ee/ENCFF502BXA.bam ENCODE3 mm10-minimal archived low read length ENCFF713HVS bam bam alignments mm10-minimal ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF806TVZ/, /files/ENCFF001MRP/ 1154604299 J. Michael Cherry, Stanford 21f1e4e34a13e82262ece1565a55ec2f https://www.encodeproject.org/files/ENCFF713HVS/@@download/ENCFF713HVS.bam archived s3://encode-public/2015/05/23/79400923-fcec-48ee-be14-6296d0a40250/ENCFF713HVS.bam ENCODE3 mm10-minimal archived low read length ENCFF069HPK bam bam unfiltered alignments mm10 ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MRP/ 1439152303 ENCODE Processing Pipeline 9158a8596214654abdbb055338b109c3 https://www.encodeproject.org/files/ENCFF069HPK/@@download/ENCFF069HPK.bam released s3://encode-public/2016/11/28/1da33c24-21da-4fba-ae5e-3df18ef5b5e8/ENCFF069HPK.bam ENCODE3 mm10 archived low read length ENCFF538SNE bam bam alignments mm10 ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 41 /files/ENCFF018NEO/, /files/ENCFF001MRP/ 1042803244 ENCODE Processing Pipeline 76f28cabc258215dd9b857c4931b7900 https://www.encodeproject.org/files/ENCFF538SNE/@@download/ENCFF538SNE.bam released s3://encode-public/2016/11/28/d40f8c1c-5917-4da3-b35a-4263b56b7ba0/ENCFF538SNE.bam ENCODE3 mm10 archived low read length ENCFF092OKE bam bam alignments mm10 ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRP/, /files/ENCFF309GLL/ 1170333904 ENCODE Processing Pipeline 70b090144a668b87c991e317606256ae https://www.encodeproject.org/files/ENCFF092OKE/@@download/ENCFF092OKE.bam released s3://encode-public/2020/11/06/05b5db65-3fe3-45f1-b20b-fa1448aca479/ENCFF092OKE.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF440QZR bam bam unfiltered alignments mm10 ENCSR000DGW Control ChIP-seq /mouse-donors/ENCDO089AAA/ EFO:0002055 G1E-ER4 cell line Mus musculus DNA 2012-08-07 ENCODE see document 1 1_1 48 /files/ENCFF001MRP/, /files/ENCFF309GLL/ 1564027299 ENCODE Processing Pipeline 7a4f30ddebeb5bf2d986dfed5a9edde6 https://www.encodeproject.org/files/ENCFF440QZR/@@download/ENCFF440QZR.bam released s3://encode-public/2020/11/06/59cecacf-42fb-46a7-b177-493ec26b6679/ENCFF440QZR.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF000RYE bam bam alignments hg19 ENCSR000DMI Control ChIP-seq UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 35 394480840 Vishwanath Iyer, UTA 16b1aff73c4254b35ae3ce1b09ca987f https://www.encodeproject.org/files/ENCFF000RYE/@@download/ENCFF000RYE.bam archived s3://encode-public/2012/07/26/fca17ccc-6ade-4239-a1a2-10de7831085e/ENCFF000RYE.bam Lab custom hg19 archived extremely low read depth ENCFF000RYF bigWig bigWig signal hg19 ENCSR000DMI Control ChIP-seq UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 3356612054 Vishwanath Iyer, UTA 5e3e21bb4f6d922d38ac55b3778e86c9 https://www.encodeproject.org/files/ENCFF000RYF/@@download/ENCFF000RYF.bigWig archived s3://encode-public/2012/07/26/ab4de81e-98aa-4a03-9a76-f1d2898baa0c/ENCFF000RYF.bigWig Lab custom hg19 archived extremely low read depth ENCFF000RYV fastq fastq reads ENCSR000DMI Control ChIP-seq /human-donors/ENCDO315AAA/ UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 single-ended 696683237 Vishwanath Iyer, UTA 96389a564e29509fc2faa65e717d4db8 https://www.encodeproject.org/files/ENCFF000RYV/@@download/ENCFF000RYV.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/26/2a8b1efe-c9f0-4d09-a50c-2b5ee962d95a/ENCFF000RYV.fastq.gz extremely low read depth ENCFF882SRJ bam bam alignments hg19 ENCSR000DMI Control ChIP-seq /human-donors/ENCDO315AAA/ UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RYV/ 254004169 ENCODE Processing Pipeline 5cd89b0300aef8e8702ac08fe013a6a4 https://www.encodeproject.org/files/ENCFF882SRJ/@@download/ENCFF882SRJ.bam released s3://encode-public/2017/04/11/00d43693-bc42-409e-a7b0-0ac6b9ba7a31/ENCFF882SRJ.bam ENCODE3 hg19 archived extremely low read depth ENCFF006DJO bam bam unfiltered alignments hg19 ENCSR000DMI Control ChIP-seq /human-donors/ENCDO315AAA/ UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF000RYV/ 782387402 ENCODE Processing Pipeline 18abd118dabf5a860623dc51a84628c4 https://www.encodeproject.org/files/ENCFF006DJO/@@download/ENCFF006DJO.bam released s3://encode-public/2017/07/05/d6438b35-87a4-46ed-9016-f3a188c1a984/ENCFF006DJO.bam ENCODE3 hg19 archived extremely low read depth ENCFF050KAH bam bam unfiltered alignments GRCh38 ENCSR000DMI Control ChIP-seq /human-donors/ENCDO315AAA/ UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RYV/ 783730867 ENCODE Processing Pipeline 9c7064aa8be507ef379b694898c1ed1d https://www.encodeproject.org/files/ENCFF050KAH/@@download/ENCFF050KAH.bam released s3://encode-public/2017/07/05/7905a383-204c-4f43-b395-83a75f50941a/ENCFF050KAH.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF923ZIK bam bam alignments GRCh38 ENCSR000DMI Control ChIP-seq /human-donors/ENCDO315AAA/ UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF000RYV/ 254051547 ENCODE Processing Pipeline a6f52dc0013eff141c44f607dc09fa68 https://www.encodeproject.org/files/ENCFF923ZIK/@@download/ENCFF923ZIK.bam released s3://encode-public/2017/07/05/e7b40993-9a97-4f8d-8136-f47e8925fc77/ENCFF923ZIK.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF235JTW bam bam unfiltered alignments GRCh38 ENCSR000DMI Control ChIP-seq /human-donors/ENCDO315AAA/ UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RYV/ 807778967 ENCODE Processing Pipeline 8be0bd6151f7330c40604caa28d5a7c1 https://www.encodeproject.org/files/ENCFF235JTW/@@download/ENCFF235JTW.bam released s3://encode-public/2020/08/06/49b901c1-4052-47fd-b6e0-81110541599a/ENCFF235JTW.bam ENCODE4 GRCh38 released extremely low read depth ENCFF287QYG bam bam alignments GRCh38 ENCSR000DMI Control ChIP-seq /human-donors/ENCDO315AAA/ UBERON:0002048 lung tissue Homo sapiens DNA 2012-08-27 ENCODE see document 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF000RYV/ 233913971 ENCODE Processing Pipeline e3aa30a1fd5a650d3f66e1fab211d60b https://www.encodeproject.org/files/ENCFF287QYG/@@download/ENCFF287QYG.bam released s3://encode-public/2020/08/06/34979078-4659-4e12-adc7-71215e01e78d/ENCFF287QYG.bam ENCODE4 GRCh38 released extremely low read depth ENCFF580YIK fastq fastq reads ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF975ZQI/ 4415998181 Michael Snyder, Stanford 8bba55daf1466a9d7daa0c2702112501 SRA:SRR6213059 https://www.encodeproject.org/files/ENCFF580YIK/@@download/ENCFF580YIK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/09/a2156521-5d13-40ec-9951-264b663099ef/ENCFF580YIK.fastq.gz ENCFF975ZQI fastq fastq reads ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF580YIK/ 4467098635 Michael Snyder, Stanford 0b27c3e084f93d384f81764958736b56 SRA:SRR6213059 https://www.encodeproject.org/files/ENCFF975ZQI/@@download/ENCFF975ZQI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/09/343105ac-3ec6-46f0-b10a-adf3135ceb21/ENCFF975ZQI.fastq.gz ENCFF008KXY fastq fastq reads ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF350QRO/ 3852774477 Michael Snyder, Stanford e1eb9f9f405abe7b361768f09aa9a337 SRA:SRR6213058 https://www.encodeproject.org/files/ENCFF008KXY/@@download/ENCFF008KXY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/09/afdd7479-fff4-4c2c-906a-f4c6ca6ee5f0/ENCFF008KXY.fastq.gz ENCFF350QRO fastq fastq reads ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF008KXY/ 3910164292 Michael Snyder, Stanford d8b83ac12ca9789b552aa4711b4e0cb4 SRA:SRR6213058 https://www.encodeproject.org/files/ENCFF350QRO/@@download/ENCFF350QRO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/09/0d33bb83-b494-4e24-879b-52bf6705127a/ENCFF350QRO.fastq.gz ENCFF487IET bam bam unfiltered alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF008KXY/, /files/ENCFF350QRO/ 8425082821 ENCODE Processing Pipeline 2fd96372f500c90472cbbc443c47d936 https://www.encodeproject.org/files/ENCFF487IET/@@download/ENCFF487IET.bam released s3://encode-public/2017/03/17/3fbaf14b-c88e-4f9b-ae56-86e72a7f049f/ENCFF487IET.bam ENCODE3 GRCh38 archived ENCFF505FXD bam bam unfiltered alignments hg19 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF008KXY/, /files/ENCFF350QRO/ 8388711889 ENCODE Processing Pipeline 1cc01391e11b63b0981fa50f533f7daa https://www.encodeproject.org/files/ENCFF505FXD/@@download/ENCFF505FXD.bam released s3://encode-public/2017/03/17/63ac92e7-d39a-4d6e-ac21-aafb0b37b29f/ENCFF505FXD.bam ENCODE3 hg19 archived ENCFF593DGG bam bam unfiltered alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF975ZQI/, /files/ENCFF643CGH/, /files/ENCFF580YIK/ 9518605483 ENCODE Processing Pipeline 1e2c38b75b2a40e425e197777028aac2 https://www.encodeproject.org/files/ENCFF593DGG/@@download/ENCFF593DGG.bam released s3://encode-public/2017/03/17/44bd7e44-ce9e-4374-b59e-433355579ff8/ENCFF593DGG.bam ENCODE3 GRCh38 archived ENCFF197JUY bam bam unfiltered alignments hg19 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF975ZQI/, /files/ENCFF807MUK/, /files/ENCFF580YIK/ 9499017656 ENCODE Processing Pipeline 0f228a861627759944824d5d47442dc0 https://www.encodeproject.org/files/ENCFF197JUY/@@download/ENCFF197JUY.bam released s3://encode-public/2017/03/17/d13f4f43-0f80-4889-af01-c38e4b02c5a7/ENCFF197JUY.bam ENCODE3 hg19 archived ENCFF866GOS bam bam alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF008KXY/, /files/ENCFF350QRO/ 6140182460 ENCODE Processing Pipeline 465e2194ff28838b6d15c68b0aba7e48 https://www.encodeproject.org/files/ENCFF866GOS/@@download/ENCFF866GOS.bam released s3://encode-public/2017/03/17/076d72d8-c212-401f-bff1-6c9a3b0669b1/ENCFF866GOS.bam ENCODE3 GRCh38 archived ENCFF854RGJ bam bam alignments hg19 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF008KXY/, /files/ENCFF350QRO/ 6131355610 ENCODE Processing Pipeline 54265cfa4a8cd8cc6c2b28278e22a32e https://www.encodeproject.org/files/ENCFF854RGJ/@@download/ENCFF854RGJ.bam released s3://encode-public/2017/03/17/7acce8d3-f66a-414e-b8bf-36a8ed1d5c78/ENCFF854RGJ.bam ENCODE3 hg19 archived ENCFF540UGI bam bam alignments hg19 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF975ZQI/, /files/ENCFF807MUK/, /files/ENCFF580YIK/ 7928320907 ENCODE Processing Pipeline 96391dd162a548c96dff1570b9a89043 https://www.encodeproject.org/files/ENCFF540UGI/@@download/ENCFF540UGI.bam released s3://encode-public/2017/03/17/55d52e75-6dfd-492c-9506-18ee0ca46b58/ENCFF540UGI.bam ENCODE3 hg19 archived ENCFF727ZMM bam bam alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF975ZQI/, /files/ENCFF643CGH/, /files/ENCFF580YIK/ 7945511919 ENCODE Processing Pipeline a0f228ae0f1679fff279c57b1d6bd95a https://www.encodeproject.org/files/ENCFF727ZMM/@@download/ENCFF727ZMM.bam released s3://encode-public/2017/03/17/09c9074d-124f-4cf9-be73-78cc9e028c06/ENCFF727ZMM.bam ENCODE3 GRCh38 archived ENCFF016MVJ bam bam unfiltered alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF580YIK/, /files/ENCFF975ZQI/ 9474973684 ENCODE Processing Pipeline d79ec8ca4db0db77af11ca1ef9e743f0 https://www.encodeproject.org/files/ENCFF016MVJ/@@download/ENCFF016MVJ.bam released s3://encode-public/2020/06/03/aba6fd98-53ce-492c-b14f-69b9c66c8167/ENCFF016MVJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF159UUE bam bam alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF580YIK/, /files/ENCFF975ZQI/ 7862599748 ENCODE Processing Pipeline 9a65dd232485eca707f78db8f1d82840 https://www.encodeproject.org/files/ENCFF159UUE/@@download/ENCFF159UUE.bam released s3://encode-public/2020/06/03/a736d5c1-8a31-4234-a0f7-6861cb3ff74d/ENCFF159UUE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF727VSU bam bam unfiltered alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF008KXY/, /files/ENCFF350QRO/ 8429174793 ENCODE Processing Pipeline 38c15f6025b6714d80a25a68c9356ee6 https://www.encodeproject.org/files/ENCFF727VSU/@@download/ENCFF727VSU.bam released s3://encode-public/2020/06/03/953c47fc-3bea-4f8a-8179-a051a2e76be5/ENCFF727VSU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF500LMD bam bam alignments GRCh38 ENCSR300XAV Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0002071 LNCAP cell line Homo sapiens DNA 2017-03-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF008KXY/, /files/ENCFF350QRO/ 6136430126 ENCODE Processing Pipeline 01925f28665486f0b37470aff6cbd318 https://www.encodeproject.org/files/ENCFF500LMD/@@download/ENCFF500LMD.bam released s3://encode-public/2020/06/03/a2d09584-86d3-4b33-ad7f-f858d1bcd0af/ENCFF500LMD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF000NFT bam bam alignments hg19 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGB/ 107649785 Richard Myers, HAIB 8abaaab4b377fc5cb6b09aedf059aa86 https://www.encodeproject.org/files/ENCFF000NFT/@@download/ENCFF000NFT.bam archived s3://encode-public/2012/01/23/4435a0a1-6b7a-4eca-9e4c-a6f0b94dacb0/ENCFF000NFT.bam Lab custom hg19 archived low read length ENCFF000NFU bigWig bigWig raw signal hg19 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 4506815 Richard Myers, HAIB 42f63198914ad4a49923e20998e0805f https://www.encodeproject.org/files/ENCFF000NFU/@@download/ENCFF000NFU.bigWig archived s3://encode-public/2012/01/23/0868f26e-b7dd-411e-9bf7-d1f958be759a/ENCFF000NFU.bigWig Lab custom hg19 archived low read length ENCFF000NGB fastq fastq reads ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 935755520 Richard Myers, HAIB 25dc912c2d054558552bd9d443cc144f https://www.encodeproject.org/files/ENCFF000NGB/@@download/ENCFF000NGB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/eba86d12-3537-438f-9af1-2a649f8fd7d1/ENCFF000NGB.fastq.gz low read length ENCFF102VFU bam bam unfiltered alignments GRCh38 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGB/, /files/ENCFF643CGH/ 1186241468 ENCODE Processing Pipeline 5afe090faae385fad64eb832613533db https://www.encodeproject.org/files/ENCFF102VFU/@@download/ENCFF102VFU.bam released s3://encode-public/2016/10/26/53e9b557-b333-4073-b646-db449860830f/ENCFF102VFU.bam ENCODE3 GRCh38 archived low read length ENCFF570JEY bam bam alignments GRCh38 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGB/, /files/ENCFF643CGH/ 832124216 ENCODE Processing Pipeline 193346b8a1b0ea3de68825c2c78a768e https://www.encodeproject.org/files/ENCFF570JEY/@@download/ENCFF570JEY.bam released s3://encode-public/2016/10/26/1add24cd-7d9f-47de-90f6-1d2bca177897/ENCFF570JEY.bam ENCODE3 GRCh38 archived low read length ENCFF939TAU bam bam unfiltered alignments hg19 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGB/, /files/ENCFF807MUK/ 1182556313 ENCODE Processing Pipeline 91e847572bd590f15f3ca76e2228b343 https://www.encodeproject.org/files/ENCFF939TAU/@@download/ENCFF939TAU.bam released s3://encode-public/2016/11/13/121477a2-4b71-484e-828d-a731eed63567/ENCFF939TAU.bam ENCODE3 hg19 archived low read length ENCFF540RWT bam bam alignments hg19 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGB/, /files/ENCFF807MUK/ 832195699 ENCODE Processing Pipeline 6315280037b9e144c69491535d5a6312 https://www.encodeproject.org/files/ENCFF540RWT/@@download/ENCFF540RWT.bam released s3://encode-public/2016/11/13/44d3514f-b110-45e5-8fb5-8ddc4303d3d7/ENCFF540RWT.bam ENCODE3 hg19 archived low read length ENCFF686CMI bam bam unfiltered alignments GRCh38 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NGB/ 1156286126 ENCODE Processing Pipeline f27dac994bd6647f5c527120e7ab0257 https://www.encodeproject.org/files/ENCFF686CMI/@@download/ENCFF686CMI.bam released s3://encode-public/2020/10/27/ef50bb11-505c-492d-835a-e91be005950c/ENCFF686CMI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF877EKJ bam bam alignments GRCh38 ENCSR000BPN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NGB/ 906052480 ENCODE Processing Pipeline 0c01b0d763677bb3049dcbbcd66bc5e0 https://www.encodeproject.org/files/ENCFF877EKJ/@@download/ENCFF877EKJ.bam released s3://encode-public/2020/10/27/7804e58a-0c03-4c2a-a7a8-2b8f88d8e015/ENCFF877EKJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF714XQZ fastq fastq reads ENCSR124KQG Control ChIP-seq /human-donors/ENCDO565NIZ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF473OUC/ 3740387487 Michael Snyder, Stanford 5d657f72fa9f5ae30fb5368e430d9749 https://www.encodeproject.org/files/ENCFF714XQZ/@@download/ENCFF714XQZ.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/30/fbb08150-ff17-461a-b9e0-efccf885b175/ENCFF714XQZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF085BQU bam bam unfiltered alignments GRCh38 ENCSR124KQG Control ChIP-seq /human-donors/ENCDO565NIZ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF473OUC/, /files/ENCFF714XQZ/, /files/ENCFF110MCL/ 6241057213 ENCODE Processing Pipeline db23d5321a17956db455815564445c24 https://www.encodeproject.org/files/ENCFF085BQU/@@download/ENCFF085BQU.bam released s3://encode-public/2020/10/14/d4c2b994-cb65-46fa-8ea6-c681a7c8fe04/ENCFF085BQU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF473OUC fastq fastq reads ENCSR124KQG Control ChIP-seq /human-donors/ENCDO565NIZ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF714XQZ/ 3684628595 Michael Snyder, Stanford cb58845aeb6a879053f98a5e1bcb45e6 https://www.encodeproject.org/files/ENCFF473OUC/@@download/ENCFF473OUC.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/09/30/e166fb85-fe8b-4e5d-b249-7a1797c68de0/ENCFF473OUC.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF394SMA bam bam alignments GRCh38 ENCSR124KQG Control ChIP-seq /human-donors/ENCDO565NIZ/ CL:0000100 motor neuron in vitro differentiated cells Homo sapiens DNA 2021-12-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF473OUC/, /files/ENCFF714XQZ/, /files/ENCFF110MCL/ 4676512856 ENCODE Processing Pipeline f0543f56eab1a5f1c5592f4fb0ee2281 https://www.encodeproject.org/files/ENCFF394SMA/@@download/ENCFF394SMA.bam released s3://encode-public/2020/10/14/4bf2ba71-ea48-485a-964f-7daed950ba1f/ENCFF394SMA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF000VJK fastq fastq reads ENCSR000EXM Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-11-28 ENCODE see document 1 1_1 36 single-ended 1595163256 Peggy Farnham, USC 9de275fff8ddb9bb4f7df36028f9e4eb SRA:SRR4235536 https://www.encodeproject.org/files/ENCFF000VJK/@@download/ENCFF000VJK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/2069874c-5193-464c-ab4f-4d2bc770a430/ENCFF000VJK.fastq.gz low read length ENCFF000VJM bigWig bigWig signal hg19 ENCSR000EXM Control ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-11-28 ENCODE see document 294441613 Peggy Farnham, USC 316f6e9a265b50cbeb92ae1e72cf8476 https://www.encodeproject.org/files/ENCFF000VJM/@@download/ENCFF000VJM.bigWig archived s3://encode-public/2011/03/22/81ab1f9b-ec1b-4aa3-8eec-4a0cdc8b3a2e/ENCFF000VJM.bigWig Lab custom hg19 archived low read length ENCFF000VJN bam bam alignments hg19 ENCSR000EXM Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-11-28 ENCODE see document 1 1_1 32 710309001 Peggy Farnham, USC feedcae54f05be1c822d81175c006553 https://www.encodeproject.org/files/ENCFF000VJN/@@download/ENCFF000VJN.bam archived s3://encode-public/2011/03/22/740e7fc2-c6ed-4352-96fc-e9e334420ca6/ENCFF000VJN.bam Lab custom hg19 archived low read length ENCFF843DLH bam bam unfiltered alignments hg19 ENCSR000EXM Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-11-28 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000VJK/ 1802303959 ENCODE Processing Pipeline 36d6cc02919fcaecc393d4ef36d8ffed https://www.encodeproject.org/files/ENCFF843DLH/@@download/ENCFF843DLH.bam released s3://encode-public/2018/02/22/8813dc47-76a2-4003-90cc-789a5a35be95/ENCFF843DLH.bam ENCODE3 hg19 archived low read length ENCFF025ODI bam bam unfiltered alignments GRCh38 ENCSR000EXM Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2011-11-28 ENCODE 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GRCh38 released low read length ENCFF999ONI bam bam alignments GRCh38 ENCSR799TWV Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF148FBA/, /files/ENCFF880KDO/, /files/ENCFF110MCL/, /files/ENCFF527MYS/ 1966681997 ENCODE Processing Pipeline 357e3dbbe0fdb0f381216febc92ce105 https://www.encodeproject.org/files/ENCFF999ONI/@@download/ENCFF999ONI.bam released s3://encode-public/2020/10/09/e9b293b3-c171-4a91-a033-402cfd31911b/ENCFF999ONI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF205WOH fastq fastq reads ENCSR298PFG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 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https://www.encodeproject.org/files/ENCFF163HNA/@@download/ENCFF163HNA.bam released s3://encode-public/2020/05/15/4143eebd-6cfc-4f87-a8d1-b5e8b94551d9/ENCFF163HNA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF908RHU fastq fastq reads ENCSR948MUA Control ChIP-seq /worm-donors/ENCDO918RUM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175858/'], '@type': ['Target', 'Item'], 'name': 'attf-4-celegans', 'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 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'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 25506450 Michael Snyder, Stanford 2ee89b4451390992aa28c2f39f1a5cbc https://www.encodeproject.org/files/ENCFF218BWS/@@download/ENCFF218BWS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/4053a047-b074-46a0-8722-886e336ad947/ENCFF218BWS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF282HVR fastq fastq reads ENCSR948MUA Control ChIP-seq /worm-donors/ENCDO918RUM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175858/'], '@type': ['Target', 'Item'], 'name': 'attf-4-celegans', 'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_2 32 single-ended 17403765 Michael Snyder, Stanford 384c68f8b9bfe2fdfee6677c5a818ef7 https://www.encodeproject.org/files/ENCFF341LQR/@@download/ENCFF341LQR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/0b2757a2-0975-4f48-acef-2188c885dde6/ENCFF341LQR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF273EWA bam bam alignments ce10 ENCSR948MUA Control ChIP-seq /worm-donors/ENCDO918RUM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175858/'], '@type': ['Target', 'Item'], 'name': 'attf-4-celegans', 'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 2_2, 3_1 32 /files/ENCFF341LQR/, /files/ENCFF908RHU/, /files/ENCFF218BWS/, /files/ENCFF987UMF/, /files/ENCFF282HVR/ 274318092 Kevin White, UChicago d57cf4a042b94e5da8a7ad5372269b80 https://www.encodeproject.org/files/ENCFF273EWA/@@download/ENCFF273EWA.bam released s3://encode-public/2017/04/27/3a2e9136-78d7-4d03-974f-0a58d1832380/ENCFF273EWA.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF120BMM bam bam alignments ce11 ENCSR948MUA Control ChIP-seq /worm-donors/ENCDO918RUM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175858/'], '@type': ['Target', 'Item'], 'name': 'attf-4-celegans', 'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 2_2, 3_1 32 /files/ENCFF341LQR/, /files/ENCFF908RHU/, /files/ENCFF218BWS/, /files/ENCFF282HVR/, /files/ENCFF586MOL/ 274572530 Kevin White, UChicago 9346bbba1b467fe6a92c1e937fe74697 https://www.encodeproject.org/files/ENCFF120BMM/@@download/ENCFF120BMM.bam released s3://encode-public/2017/04/27/46eb7d77-5155-40bb-b7ba-446da2c8f522/ENCFF120BMM.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF647OOS bigWig bigWig read-depth normalized signal ce10 ENCSR948MUA Control ChIP-seq /worm-donors/ENCDO918RUM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis 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organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175858/'], '@type': ['Target', 'Item'], 'name': 'attf-4-celegans', 'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 2_2, 3_1 /files/ENCFF273EWA/ 9975936 Kevin White, UChicago d0ebcf7f137bb8c8f14d2f62d60fd34f https://www.encodeproject.org/files/ENCFF778ZNB/@@download/ENCFF778ZNB.bigWig released s3://encode-public/2017/04/29/013802cf-d3fe-4ee2-ac5e-e3e3edd181b7/ENCFF778ZNB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF367KTJ bigWig bigWig signal of unique reads ce11 ENCSR948MUA Control ChIP-seq /worm-donors/ENCDO918RUM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175858/'], '@type': ['Target', 'Item'], 'name': 'attf-4-celegans', 'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 2_2, 3_1 /files/ENCFF120BMM/ 9973420 Kevin White, UChicago 868e4844c8e4eef8129f7d7d7a2fd3ae https://www.encodeproject.org/files/ENCFF367KTJ/@@download/ENCFF367KTJ.bigWig released s3://encode-public/2017/04/29/577de8fa-c6fd-4ea0-96cc-bb159c7ed6a4/ENCFF367KTJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF556FIH bigWig bigWig read-depth normalized signal ce11 ENCSR948MUA Control ChIP-seq /worm-donors/ENCDO918RUM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175858/'], '@type': ['Target', 'Item'], 'name': 'attf-4-celegans', 'label': 'attf-4', '@id': '/targets/attf-4-celegans/', 'title': 'attf-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '13ca3b48-fb62-45fb-a527-3773f5abfbad', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 2_2, 3_1 /files/ENCFF120BMM/ 9986352 Kevin White, UChicago e11bace5908118d3e98bfcd77643ef1b https://www.encodeproject.org/files/ENCFF556FIH/@@download/ENCFF556FIH.bigWig released s3://encode-public/2017/04/29/0ad0db00-fdb8-472c-a6ca-b6e9d6d223b1/ENCFF556FIH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF576DIM fastq fastq reads ENCSR706XZJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1998/'], '@type': ['Target', 'Item'], 'name': 'ELF2-human', 'label': 'ELF2', '@id': '/targets/ELF2-human/', 'title': 'ELF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3fcf3254-dcf5-469b-b723-fe4e6c8b1125', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF849YFY/ 2474824510 Michael Snyder, Stanford 633fe71ade79c5e3483f867f015e6493 SRA:SRR14833699 https://www.encodeproject.org/files/ENCFF576DIM/@@download/ENCFF576DIM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/25/cecd3250-352a-4c8c-8422-cf4142a759eb/ENCFF576DIM.fastq.gz mild to moderate bottlenecking ENCFF849YFY fastq fastq reads ENCSR706XZJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo 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EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1998/'], '@type': ['Target', 'Item'], 'name': 'ELF2-human', 'label': 'ELF2', '@id': '/targets/ELF2-human/', 'title': 'ELF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3fcf3254-dcf5-469b-b723-fe4e6c8b1125', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF098COQ/ 2715230941 Michael Snyder, Stanford 1f8a2ba8c5d653fe94df4b6d8c598f1f SRA:SRR14833700 https://www.encodeproject.org/files/ENCFF906VQY/@@download/ENCFF906VQY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/25/d8d62151-5472-4b7c-9652-83aa60b7b334/ENCFF906VQY.fastq.gz mild to moderate bottlenecking ENCFF877GEA bam bam unfiltered alignments GRCh38 ENCSR706XZJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1998/'], '@type': ['Target', 'Item'], 'name': 'ELF2-human', 'label': 'ELF2', '@id': '/targets/ELF2-human/', 'title': 'ELF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3fcf3254-dcf5-469b-b723-fe4e6c8b1125', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF576DIM/, /files/ENCFF098COQ/, /files/ENCFF906VQY/, /files/ENCFF849YFY/ 10120833519 ENCODE Processing Pipeline 03325101779b40d5b56ec1fbe6fc0485 https://www.encodeproject.org/files/ENCFF877GEA/@@download/ENCFF877GEA.bam released s3://encode-public/2020/05/11/cc49e546-20f8-4ff4-b9cb-799b1adbab8d/ENCFF877GEA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF434IVV bam bam alignments GRCh38 ENCSR706XZJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1998/'], '@type': ['Target', 'Item'], 'name': 'ELF2-human', 'label': 'ELF2', '@id': '/targets/ELF2-human/', 'title': 'ELF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3fcf3254-dcf5-469b-b723-fe4e6c8b1125', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF576DIM/, /files/ENCFF098COQ/, /files/ENCFF906VQY/, /files/ENCFF849YFY/ 7298430344 ENCODE Processing Pipeline 2fc7f42c17fcaef1e927a9dfbdde29b9 https://www.encodeproject.org/files/ENCFF434IVV/@@download/ENCFF434IVV.bam released s3://encode-public/2020/05/11/dc52bd8e-2e5d-483e-b11d-1abe2ea8e785/ENCFF434IVV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF337HED fastq fastq reads ENCSR720GSE Control ChIP-seq /human-donors/ENCDO133EXU/ EFO:0005694 KMS-11 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 76 single-ended 2106474507 Bradley Bernstein, Broad 736bc4455e6fa785d103b0febe63921e SRA:SRR5339215 https://www.encodeproject.org/files/ENCFF337HED/@@download/ENCFF337HED.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/05/23/5c42279e-6b62-45f5-abc8-548096a22052/ENCFF337HED.fastq.gz mixed run types ENCFF635FTP bam bam unfiltered alignments GRCh38 ENCSR720GSE Control ChIP-seq /human-donors/ENCDO133EXU/ EFO:0005694 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types ENCFF387DQY bam bam alignments GRCh38 ENCSR720GSE Control ChIP-seq /human-donors/ENCDO133EXU/ EFO:0005694 KMS-11 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF218VYP/, /files/ENCFF411REJ/, /files/ENCFF130NIU/, /files/ENCFF643CGH/ 2334598408 ENCODE Processing Pipeline 820f46da92ecb0742bd7b6306263d41c https://www.encodeproject.org/files/ENCFF387DQY/@@download/ENCFF387DQY.bam released s3://encode-public/2017/03/17/edb92f70-0bfc-4cbb-ba11-04287a51da9d/ENCFF387DQY.bam ENCODE3 GRCh38 archived mixed run types ENCFF708VUG bam bam alignments hg19 ENCSR720GSE Control ChIP-seq /human-donors/ENCDO133EXU/ EFO:0005694 KMS-11 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 36 /files/ENCFF324AOR/, /files/ENCFF807MUK/, /files/ENCFF303RYF/, /files/ENCFF337HED/ 1769662552 ENCODE Processing Pipeline d1c7744861c6888a02fef4b11b437592 https://www.encodeproject.org/files/ENCFF708VUG/@@download/ENCFF708VUG.bam released 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alignments GRCh38 ENCSR720GSE Control ChIP-seq /human-donors/ENCDO133EXU/ EFO:0005694 KMS-11 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF337HED/, /files/ENCFF303RYF/, /files/ENCFF324AOR/ 1932498984 ENCODE Processing Pipeline 32168ed0c33153ea3f2df742ef539e9b https://www.encodeproject.org/files/ENCFF706EXO/@@download/ENCFF706EXO.bam released s3://encode-public/2021/01/22/dec55952-830a-4f0b-8e6a-7ec1b67749e3/ENCFF706EXO.bam ENCODE4 v1.6.1 GRCh38 released mixed run types ENCFF001HUZ bam bam alignments hg19 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVP/ 1333886257 John Stamatoyannopoulos, UW 291082132e6429eb5af0094d5ec3b49c https://www.encodeproject.org/files/ENCFF001HUZ/@@download/ENCFF001HUZ.bam archived s3://encode-public/2011/06/25/237832a7-0800-4ef9-b5f1-185bf69fdda7/ENCFF001HUZ.bam Lab custom hg19 archived low read length ENCFF001HVC bigWig bigWig raw signal hg19 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HUZ/ 236784198 John Stamatoyannopoulos, UW 0a8dc518f723719fc3f965259a7132e7 https://www.encodeproject.org/files/ENCFF001HVC/@@download/ENCFF001HVC.bigWig archived s3://encode-public/2011/06/25/93e5e46a-160c-4edc-903a-d77ebcd76847/ENCFF001HVC.bigWig Lab custom hg19 archived low read length ENCFF001HVP fastq fastq reads ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1394632394 John Stamatoyannopoulos, UW 1bcb2923945d56e6199a062f56878fc2 https://www.encodeproject.org/files/ENCFF001HVP/@@download/ENCFF001HVP.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/d9b5155d-e70b-4e34-a3a8-340822eb0eef/ENCFF001HVP.fastq.gz low read length ENCFF707TMD bam bam unfiltered alignments GRCh38 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVP/, /files/ENCFF643CGH/ 1666374913 ENCODE Processing Pipeline f16c16c02da63e4050a0532bc6a8d2e2 https://www.encodeproject.org/files/ENCFF707TMD/@@download/ENCFF707TMD.bam released s3://encode-public/2016/08/09/33c95565-a617-49fb-aa40-4503bd7cc7c5/ENCFF707TMD.bam ENCODE3 GRCh38 archived low read length ENCFF700CVK bam bam alignments GRCh38 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVP/, /files/ENCFF643CGH/ 1238065938 ENCODE Processing Pipeline a8e3a8025f50b4fba2d1a3e1023d7e2f https://www.encodeproject.org/files/ENCFF700CVK/@@download/ENCFF700CVK.bam released s3://encode-public/2016/08/09/950158b9-1d31-4e94-8411-389945e862d0/ENCFF700CVK.bam ENCODE3 GRCh38 archived low read length ENCFF685YFH bam bam unfiltered alignments hg19 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVP/, /files/ENCFF807MUK/ 1657043714 ENCODE Processing Pipeline 91ed768abf505ff040c77c6b814362bc https://www.encodeproject.org/files/ENCFF685YFH/@@download/ENCFF685YFH.bam released s3://encode-public/2016/11/13/bd133044-cf9f-49ac-a25c-edcb0a3e82eb/ENCFF685YFH.bam ENCODE3 hg19 archived low read length ENCFF162IBF bam bam alignments hg19 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HVP/, /files/ENCFF807MUK/ 1238429621 ENCODE Processing Pipeline f1e7c4955fe0a458a048db5a55de599e https://www.encodeproject.org/files/ENCFF162IBF/@@download/ENCFF162IBF.bam released s3://encode-public/2016/11/13/cecbf75d-39ad-4442-92a4-ac9e2cdec7b3/ENCFF162IBF.bam ENCODE3 hg19 archived low read length ENCFF028XEI bam bam alignments GRCh38 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HVP/ 1337737767 ENCODE Processing Pipeline 5ce44792c7a9098368bd8234d1433e15 https://www.encodeproject.org/files/ENCFF028XEI/@@download/ENCFF028XEI.bam released s3://encode-public/2020/09/03/92b1401c-e157-41d7-845d-2933c8413562/ENCFF028XEI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF840VZZ bam bam unfiltered alignments GRCh38 ENCSR000DWR Control ChIP-seq /human-donors/ENCDO191CQJ/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HVP/ 1636410385 ENCODE Processing Pipeline 1b1652484136c81c313eebe48b3d4b1a https://www.encodeproject.org/files/ENCFF840VZZ/@@download/ENCFF840VZZ.bam released s3://encode-public/2020/09/03/c59d70cc-6be2-4877-aaea-1d5f21b6f250/ENCFF840VZZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF593SID fastq fastq reads ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 114110953 Michael Snyder, Stanford cfd220b905d92713ccad9cc11be4eddf https://www.encodeproject.org/files/ENCFF593SID/@@download/ENCFF593SID.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f8ad9cd9-14c4-4f42-b0be-9f4662071fe3/ENCFF593SID.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF708QGN fastq fastq reads ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 120559009 Michael Snyder, Stanford 3458c0be7ee099a9ea7bf0a2dda61a42 https://www.encodeproject.org/files/ENCFF708QGN/@@download/ENCFF708QGN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/014a2679-c430-4255-88a1-ffd67fb7ca75/ENCFF708QGN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF486DRF fastq fastq reads ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 184290193 Michael Snyder, Stanford 0b37a5a7d2a171556b6dd84cc9dd637c https://www.encodeproject.org/files/ENCFF486DRF/@@download/ENCFF486DRF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/64546bcf-f4e5-4c7e-a6e5-e89ef9b62936/ENCFF486DRF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF296LXZ bam bam alignments ce10 ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF486DRF/, /files/ENCFF593SID/, /files/ENCFF708QGN/, /files/ENCFF987UMF/ 540350409 Kevin White, UChicago 9e3aad56600b3959e9407d67d5874d05 https://www.encodeproject.org/files/ENCFF296LXZ/@@download/ENCFF296LXZ.bam released s3://encode-public/2016/10/18/361a5dce-02f8-40e6-90a0-ff53b3c44c9a/ENCFF296LXZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF191BRR bam bam alignments ce11 ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF486DRF/, /files/ENCFF593SID/, /files/ENCFF708QGN/, /files/ENCFF586MOL/ 540890865 Kevin White, UChicago a0f2dbc3b31a6ccbb9126516f32d44d8 https://www.encodeproject.org/files/ENCFF191BRR/@@download/ENCFF191BRR.bam released s3://encode-public/2016/10/18/e52cca41-d2be-4fd4-aeb9-f662526bb2e2/ENCFF191BRR.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF629LWY bigWig bigWig signal of unique reads ce10 ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF296LXZ/ 10061438 Kevin White, UChicago da78a645446058f0078b333225aec6e4 https://www.encodeproject.org/files/ENCFF629LWY/@@download/ENCFF629LWY.bigWig released s3://encode-public/2016/10/20/3c66e7f1-f091-486d-9c47-3b6d369f0128/ENCFF629LWY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF273XEG bigWig bigWig read-depth normalized signal ce10 ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF296LXZ/ 10065653 Kevin White, UChicago 5004a987193fef1b37573b3051c8eedd https://www.encodeproject.org/files/ENCFF273XEG/@@download/ENCFF273XEG.bigWig released s3://encode-public/2016/10/20/fe7ce874-725f-4550-9e55-303266a3ee8c/ENCFF273XEG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF662TIS bigWig bigWig read-depth normalized signal ce11 ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF191BRR/ 10061437 Kevin White, UChicago d95a3c0d44d3ce32d17679be0e154e47 https://www.encodeproject.org/files/ENCFF662TIS/@@download/ENCFF662TIS.bigWig released s3://encode-public/2016/10/20/2061aa7f-fd00-445f-9ea1-c5fbbaf9086e/ENCFF662TIS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF263GES bigWig bigWig signal of unique reads ce11 ENCSR641JZF Control ChIP-seq /worm-donors/ENCDO169AAR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176083/'], '@type': ['Target', 'Item'], 'name': 'lin-13-celegans', 'label': 'lin-13', '@id': '/targets/lin-13-celegans/', 'title': 'lin-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bdc9e248-4694-4ec7-bd30-c575139c3468', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF191BRR/ 10053374 Kevin White, UChicago d40969be116fec15bf9c354d56da3ea3 https://www.encodeproject.org/files/ENCFF263GES/@@download/ENCFF263GES.bigWig released s3://encode-public/2016/10/20/2e004350-ec57-442f-8911-a436b49a0d2e/ENCFF263GES.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF148SPW bigWig bigWig read-depth normalized signal dm6 ENCSR465VBZ Control ChIP-seq /fly-donors/ENCDO138XOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45871/'], '@type': ['Target', 'Item'], 'name': 'grau-dmelanogaster', 'label': 'grau', '@id': '/targets/grau-dmelanogaster/', 'title': 'grau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '358b9207-77f0-4421-bc3b-62ae0c6dc918', 'status': 'released'} dm3 2R 16888999 16909959 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF931YTX/ 17822378 Kevin White, UChicago f885ef9e785d34e40d67d0bc49750f78 https://www.encodeproject.org/files/ENCFF148SPW/@@download/ENCFF148SPW.bigWig released s3://encode-public/2019/06/18/069a89d2-7619-469f-a08c-e31ffa6c2e9f/ENCFF148SPW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF529LKA fastq fastq reads ENCSR465VBZ Control ChIP-seq /fly-donors/ENCDO138XOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45871/'], '@type': ['Target', 'Item'], 'name': 'grau-dmelanogaster', 'label': 'grau', '@id': '/targets/grau-dmelanogaster/', 'title': 'grau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '358b9207-77f0-4421-bc3b-62ae0c6dc918', 'status': 'released'} dm3 2R 16888999 16909959 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1630425734 Kevin White, UChicago e10d3da96fd652016124c44b16aa2dcc https://www.encodeproject.org/files/ENCFF529LKA/@@download/ENCFF529LKA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/d4e4a5bf-e104-4af9-a1f2-08ac6cd35338/ENCFF529LKA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF931YTX bam bam alignments dm6 ENCSR465VBZ Control ChIP-seq /fly-donors/ENCDO138XOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45871/'], '@type': ['Target', 'Item'], 'name': 'grau-dmelanogaster', 'label': 'grau', '@id': '/targets/grau-dmelanogaster/', 'title': 'grau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '358b9207-77f0-4421-bc3b-62ae0c6dc918', 'status': 'released'} dm3 2R 16888999 16909959 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF529LKA/, /files/ENCFF479RCH/ 2184980053 Kevin White, UChicago eacc329a9f3db9f9f18ae967c4611c27 https://www.encodeproject.org/files/ENCFF931YTX/@@download/ENCFF931YTX.bam released s3://encode-public/2019/06/18/e0fcc8f0-5703-4411-be76-a014f36c5d26/ENCFF931YTX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF308NSM bigWig bigWig signal of unique reads dm6 ENCSR465VBZ Control ChIP-seq /fly-donors/ENCDO138XOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45871/'], '@type': ['Target', 'Item'], 'name': 'grau-dmelanogaster', 'label': 'grau', '@id': '/targets/grau-dmelanogaster/', 'title': 'grau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '358b9207-77f0-4421-bc3b-62ae0c6dc918', 'status': 'released'} dm3 2R 16888999 16909959 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF931YTX/ 17874600 Kevin White, UChicago b9145077d66f9d4f78acfd6885a2a398 https://www.encodeproject.org/files/ENCFF308NSM/@@download/ENCFF308NSM.bigWig released s3://encode-public/2019/06/18/c5dc378e-64c7-4bd3-9abd-eb5e9d67ef55/ENCFF308NSM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF527WHD fastq fastq reads ENCSR171XET Control ChIP-seq /fly-donors/ENCDO520RLQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1054242668 Kevin White, UChicago 14b6c3937911dacb92f0d0f56bcdccc2 https://www.encodeproject.org/files/ENCFF527WHD/@@download/ENCFF527WHD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/b0663ac6-53c4-4d39-9128-518106a3f070/ENCFF527WHD.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF693TQN bam bam alignments dm3 ENCSR171XET Control ChIP-seq /fly-donors/ENCDO520RLQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF527WHD/ 1521743491 Kevin White, UChicago ea9dde895ecd2562736e7f58479be244 https://www.encodeproject.org/files/ENCFF693TQN/@@download/ENCFF693TQN.bam released s3://encode-public/2015/08/03/ee94db47-e3a2-4dbb-8504-90f4ed14a727/ENCFF693TQN.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF499ZPR bigWig bigWig read-depth normalized signal dm3 ENCSR171XET Control ChIP-seq /fly-donors/ENCDO520RLQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF693TQN/ 15557707 Kevin White, UChicago 466b10d38b02c78929d9f4f68c6de795 https://www.encodeproject.org/files/ENCFF499ZPR/@@download/ENCFF499ZPR.bigWig released s3://encode-public/2015/10/06/8e0b0d0a-8253-433a-b02b-3d6d7b10b6e3/ENCFF499ZPR.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF354ATU bigWig bigWig signal of unique reads dm3 ENCSR171XET Control ChIP-seq /fly-donors/ENCDO520RLQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF693TQN/ 15498811 Kevin White, UChicago fd7accfa2ec518648b3339c7cf6ad45e https://www.encodeproject.org/files/ENCFF354ATU/@@download/ENCFF354ATU.bigWig released s3://encode-public/2015/10/06/bb0cd00f-c8fd-4acd-ac27-144dd6d03594/ENCFF354ATU.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF601CEE bam bam alignments dm6 ENCSR171XET Control ChIP-seq /fly-donors/ENCDO520RLQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF527WHD/ 1516694586 Kevin White, UChicago 6493c0a2d9eef973125302b049904a30 https://www.encodeproject.org/files/ENCFF601CEE/@@download/ENCFF601CEE.bam released s3://encode-public/2016/04/21/1282882f-817d-46a9-a2e2-04d42b488744/ENCFF601CEE.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF649BJT bigWig bigWig signal of unique reads dm6 ENCSR171XET Control ChIP-seq /fly-donors/ENCDO520RLQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF601CEE/ 17564494 Kevin White, UChicago 87bb571c1eac30ad4762d894d2443e56 https://www.encodeproject.org/files/ENCFF649BJT/@@download/ENCFF649BJT.bigWig released s3://encode-public/2016/06/20/00982493-f14d-46ce-bbd4-d87e13738dd8/ENCFF649BJT.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF584IEV bigWig bigWig read-depth normalized signal dm6 ENCSR171XET Control ChIP-seq /fly-donors/ENCDO520RLQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF601CEE/ 17640323 Kevin White, UChicago a115cb1ebe775c3e625cf90c157b1280 https://www.encodeproject.org/files/ENCFF584IEV/@@download/ENCFF584IEV.bigWig released s3://encode-public/2016/06/20/87f8cb44-bc27-4a6e-9e15-5fe0f45dfdf8/ENCFF584IEV.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF411VEQ fastq fastq reads ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 238794868 Michael Snyder, Stanford 95d38911dbdba0866d3d27f4a0ca7134 https://www.encodeproject.org/files/ENCFF411VEQ/@@download/ENCFF411VEQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4dabb3e3-ee98-4621-a261-b523dde3eca7/ENCFF411VEQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF482VCV fastq fastq reads ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 264085797 Michael Snyder, Stanford d2e196e0979121a1cb4d04f32d58eb4b https://www.encodeproject.org/files/ENCFF482VCV/@@download/ENCFF482VCV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/696505e2-46a0-4a62-b8f6-d54aaef2c142/ENCFF482VCV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF045YEW bam bam alignments ce10 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 /files/ENCFF482VCV/, /files/ENCFF987UMF/ 305491638 Kevin White, UChicago c69f7a83ab91f39e7d6f5d70557f3155 https://www.encodeproject.org/files/ENCFF045YEW/@@download/ENCFF045YEW.bam released s3://encode-public/2016/10/24/2ad136ec-b48b-478c-b9b7-edc7e8b46afc/ENCFF045YEW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF802UID bam bam alignments ce10 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 /files/ENCFF411VEQ/, /files/ENCFF987UMF/ 276041046 Kevin White, UChicago 054014430663f16ce0ac454010beb3b3 https://www.encodeproject.org/files/ENCFF802UID/@@download/ENCFF802UID.bam released s3://encode-public/2016/10/24/0848e9ba-a386-4461-8e55-01c7b9039161/ENCFF802UID.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF401ZNQ bam bam alignments ce11 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 /files/ENCFF482VCV/, /files/ENCFF586MOL/ 305791718 Kevin White, UChicago 4dba4349397145fd6ee0c32bbf0961d1 https://www.encodeproject.org/files/ENCFF401ZNQ/@@download/ENCFF401ZNQ.bam released s3://encode-public/2016/10/24/91eb3f4a-0d33-4720-b458-17b4d19e1ed8/ENCFF401ZNQ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF871GVD bam bam alignments ce11 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 /files/ENCFF411VEQ/, /files/ENCFF586MOL/ 276303612 Kevin White, UChicago 4b345221eb51f73b2f5c4c3856b4144f https://www.encodeproject.org/files/ENCFF871GVD/@@download/ENCFF871GVD.bam released s3://encode-public/2016/10/24/168cd254-cd39-4c81-9b48-67116e3bcde1/ENCFF871GVD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF552OAE bigWig bigWig signal of unique reads ce10 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF802UID/, /files/ENCFF045YEW/ 9960598 Kevin White, UChicago 46f9276d6b766833d15d21d29ebcf4a8 https://www.encodeproject.org/files/ENCFF552OAE/@@download/ENCFF552OAE.bigWig released s3://encode-public/2016/10/24/80a79888-ca1b-4481-a8af-7e337e988e6b/ENCFF552OAE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF195IIN bigWig bigWig read-depth normalized signal ce10 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF802UID/, /files/ENCFF045YEW/ 9991072 Kevin White, UChicago d03e40aa87cc026ba07f2ba1903f8182 https://www.encodeproject.org/files/ENCFF195IIN/@@download/ENCFF195IIN.bigWig released s3://encode-public/2016/10/24/02849bb7-9e13-4e0c-8338-94efd8824ad6/ENCFF195IIN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF712QHK bigWig bigWig signal of unique reads ce11 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF871GVD/, /files/ENCFF401ZNQ/ 9957453 Kevin White, UChicago 48beb7f3d621e65940d259d5134882bf https://www.encodeproject.org/files/ENCFF712QHK/@@download/ENCFF712QHK.bigWig released s3://encode-public/2016/10/24/0272a30b-67f8-44b4-b9df-c1c3074c924e/ENCFF712QHK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF986XTG bigWig bigWig read-depth normalized signal ce11 ENCSR122WYP Control ChIP-seq /worm-donors/ENCDO692BOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172909/'], '@type': ['Target', 'Item'], 'name': 'sptf-1-celegans', 'label': 'sptf-1', '@id': '/targets/sptf-1-celegans/', 'title': 'sptf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9d728c23-658a-49a9-be83-cec060a51369', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF871GVD/, /files/ENCFF401ZNQ/ 9988108 Kevin White, UChicago dbe12ee386e01b5c386ccc0edc135752 https://www.encodeproject.org/files/ENCFF986XTG/@@download/ENCFF986XTG.bigWig released s3://encode-public/2016/10/24/d2a46ecb-b174-45a9-bdec-d03b79be8bbb/ENCFF986XTG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF968MEE fastq fastq reads ENCSR589YUZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 single-ended 3745048532 Richard Myers, HAIB 9cf8a525323a37c081030983fb85ef9d SRA:SRR14107477 https://www.encodeproject.org/files/ENCFF968MEE/@@download/ENCFF968MEE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/10/23/243d8860-ed58-468e-be12-5b921a330ba4/ENCFF968MEE.fastq.gz ENCFF249YTO bam bam unfiltered alignments GRCh38 ENCSR589YUZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF968MEE/ 3736331630 ENCODE Processing Pipeline 78fd14375853980c5db004e705c60def https://www.encodeproject.org/files/ENCFF249YTO/@@download/ENCFF249YTO.bam released s3://encode-public/2020/04/20/be1212a8-bb06-4884-b179-6c40e64f437a/ENCFF249YTO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF243WVM bam bam alignments GRCh38 ENCSR589YUZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF968MEE/ 2353973774 ENCODE Processing Pipeline dd3d56175b19f0ecdf9d4bdb3bec001f https://www.encodeproject.org/files/ENCFF243WVM/@@download/ENCFF243WVM.bam released s3://encode-public/2020/04/20/ba4b509f-95fa-4c93-8a82-abded509f69c/ENCFF243WVM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF898SUQ fastq fastq reads ENCSR862VRN Control ChIP-seq /fly-donors/ENCDO596PEQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35398/'], '@type': ['Target', 'Item'], 'name': 'Hr39-dmelanogaster', 'label': 'Hr39', '@id': '/targets/Hr39-dmelanogaster/', 'title': 'Hr39 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '47609754-c50d-4d34-afb7-6ca4257bfd4a', 'status': 'released'} dm3 2L 21178273 21277562 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 855443031 Kevin White, UChicago 3fede51731235ba9ffb23301751c4a06 https://www.encodeproject.org/files/ENCFF898SUQ/@@download/ENCFF898SUQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/63cfdf9b-bb57-4284-b91a-853cb9c46db8/ENCFF898SUQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF581RIS bam bam alignments dm3 ENCSR862VRN Control ChIP-seq /fly-donors/ENCDO596PEQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35398/'], '@type': ['Target', 'Item'], 'name': 'Hr39-dmelanogaster', 'label': 'Hr39', '@id': '/targets/Hr39-dmelanogaster/', 'title': 'Hr39 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '47609754-c50d-4d34-afb7-6ca4257bfd4a', 'status': 'released'} dm3 2L 21178273 21277562 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF898SUQ/ 1222145204 Kevin White, UChicago 8358989370f0c58eb15c9c831d763ca3 https://www.encodeproject.org/files/ENCFF581RIS/@@download/ENCFF581RIS.bam released s3://encode-public/2015/10/22/13692d9e-bb67-448d-855b-37003d47f7d0/ENCFF581RIS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF757TXZ bigWig bigWig read-depth normalized signal dm3 ENCSR862VRN Control ChIP-seq /fly-donors/ENCDO596PEQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35398/'], '@type': ['Target', 'Item'], 'name': 'Hr39-dmelanogaster', 'label': 'Hr39', '@id': '/targets/Hr39-dmelanogaster/', 'title': 'Hr39 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '47609754-c50d-4d34-afb7-6ca4257bfd4a', 'status': 'released'} dm3 2L 21178273 21277562 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF581RIS/ 15343032 Kevin White, UChicago f9d4004be8de8a9e233fc5b54f8ada72 https://www.encodeproject.org/files/ENCFF757TXZ/@@download/ENCFF757TXZ.bigWig released s3://encode-public/2015/10/22/a0006e57-67d6-4bde-84b0-2a589391d4d5/ENCFF757TXZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF240CUP bigWig bigWig signal of unique reads dm3 ENCSR862VRN Control ChIP-seq /fly-donors/ENCDO596PEQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35398/'], '@type': ['Target', 'Item'], 'name': 'Hr39-dmelanogaster', 'label': 'Hr39', '@id': '/targets/Hr39-dmelanogaster/', 'title': 'Hr39 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '47609754-c50d-4d34-afb7-6ca4257bfd4a', 'status': 'released'} dm3 2L 21178273 21277562 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF581RIS/ 15322175 Kevin White, UChicago c60d57cab927613ac61a97470ec4034e https://www.encodeproject.org/files/ENCFF240CUP/@@download/ENCFF240CUP.bigWig released s3://encode-public/2015/10/22/9e7d71fd-3b55-4309-a3d7-010b2b7e0873/ENCFF240CUP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF664NKU bam bam alignments dm6 ENCSR862VRN Control ChIP-seq /fly-donors/ENCDO596PEQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35398/'], '@type': ['Target', 'Item'], 'name': 'Hr39-dmelanogaster', 'label': 'Hr39', '@id': '/targets/Hr39-dmelanogaster/', 'title': 'Hr39 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '47609754-c50d-4d34-afb7-6ca4257bfd4a', 'status': 'released'} dm3 2L 21178273 21277562 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF898SUQ/ 1219545351 Kevin White, UChicago 501ed9c110133017cc8902bd97c6e7a8 https://www.encodeproject.org/files/ENCFF664NKU/@@download/ENCFF664NKU.bam released s3://encode-public/2016/04/21/45d64964-e00d-4dfa-9e8e-8d6bb644e3e6/ENCFF664NKU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF187NCX bigWig bigWig read-depth normalized signal dm6 ENCSR862VRN Control ChIP-seq /fly-donors/ENCDO596PEQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35398/'], '@type': ['Target', 'Item'], 'name': 'Hr39-dmelanogaster', 'label': 'Hr39', '@id': '/targets/Hr39-dmelanogaster/', 'title': 'Hr39 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '47609754-c50d-4d34-afb7-6ca4257bfd4a', 'status': 'released'} dm3 2L 21178273 21277562 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF664NKU/ 17437260 Kevin White, UChicago b09a83611f3fa49399b6cf7617eb0b2d https://www.encodeproject.org/files/ENCFF187NCX/@@download/ENCFF187NCX.bigWig released s3://encode-public/2016/06/21/13614765-e8ef-48a5-9f6e-d57eb340ebb8/ENCFF187NCX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF591ETH bigWig bigWig signal of unique reads dm6 ENCSR862VRN Control ChIP-seq /fly-donors/ENCDO596PEQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35398/'], '@type': ['Target', 'Item'], 'name': 'Hr39-dmelanogaster', 'label': 'Hr39', '@id': '/targets/Hr39-dmelanogaster/', 'title': 'Hr39 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '47609754-c50d-4d34-afb7-6ca4257bfd4a', 'status': 'released'} dm3 2L 21178273 21277562 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF664NKU/ 17406304 Kevin White, UChicago 2a6ef2c2a37f5347af64c4dcb61fb3c4 https://www.encodeproject.org/files/ENCFF591ETH/@@download/ENCFF591ETH.bigWig released s3://encode-public/2016/06/21/04a09f2c-1011-4431-bfaa-9dff18bc8199/ENCFF591ETH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF454KIS fastq fastq reads ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 98056470 Michael Snyder, Stanford eb4c564ba2ad8b58a848fdf34f73dd34 https://www.encodeproject.org/files/ENCFF454KIS/@@download/ENCFF454KIS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/03c4b9d2-59ef-4ba0-b82c-7ae95bd006e5/ENCFF454KIS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF497FOE fastq fastq reads ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 81373942 Michael Snyder, Stanford da7135cfd5a075c0e2fd7581e6761503 https://www.encodeproject.org/files/ENCFF497FOE/@@download/ENCFF497FOE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2248b883-787c-47b4-9a87-0f88d0f222a6/ENCFF497FOE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF772ZRE bam bam alignments ce10 ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF454KIS/, /files/ENCFF497FOE/, /files/ENCFF987UMF/ 239157084 Kevin White, UChicago 367c8ca4d04412acc1b6755c91382f42 https://www.encodeproject.org/files/ENCFF772ZRE/@@download/ENCFF772ZRE.bam released s3://encode-public/2016/10/18/7f50200d-6cb2-40d4-9d74-93a3693e25e6/ENCFF772ZRE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF248XIV bam bam alignments ce11 ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF454KIS/, /files/ENCFF497FOE/, /files/ENCFF586MOL/ 239426182 Kevin White, UChicago d69dba6f06861ba6c96bcdf57658fe53 https://www.encodeproject.org/files/ENCFF248XIV/@@download/ENCFF248XIV.bam released s3://encode-public/2016/10/19/45ab82c8-6fc5-4f2b-9ce2-374bded98917/ENCFF248XIV.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF665ACP bigWig bigWig read-depth normalized signal ce10 ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF772ZRE/ 10059282 Kevin White, UChicago 5791f7f4732631405969a444ff009ace https://www.encodeproject.org/files/ENCFF665ACP/@@download/ENCFF665ACP.bigWig released s3://encode-public/2016/10/20/d404c191-6b8f-46f5-a0ed-a019850eede4/ENCFF665ACP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF478CUU bigWig bigWig signal of unique reads ce10 ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF772ZRE/ 10052951 Kevin White, UChicago 63d1869b3d81e9d3851b14dc29f8171b https://www.encodeproject.org/files/ENCFF478CUU/@@download/ENCFF478CUU.bigWig released s3://encode-public/2016/10/20/048e1da8-033a-4fe8-a026-e358489e4b49/ENCFF478CUU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF685IKE bigWig bigWig signal of unique reads ce11 ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF248XIV/ 10048890 Kevin White, UChicago ec465ec04087ab81d611477310f31a57 https://www.encodeproject.org/files/ENCFF685IKE/@@download/ENCFF685IKE.bigWig released s3://encode-public/2016/10/21/757e4a53-b1a9-4863-9613-ca29da2af66c/ENCFF685IKE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF171JVA bigWig bigWig read-depth normalized signal ce11 ENCSR626THZ Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF248XIV/ 10056478 Kevin White, UChicago a51be1a0119f8d1529e4a45b22feb6b4 https://www.encodeproject.org/files/ENCFF171JVA/@@download/ENCFF171JVA.bigWig released s3://encode-public/2016/10/21/eddea860-7fbd-4d36-b8c1-d4d455ec8942/ENCFF171JVA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF006YUD tagAlign tagAlign alignments hg19 ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF145XRU/ 142249482 Anshul Kundaje, Stanford 7a82b3303ff9f8bb1152a65f1d32eaf0 https://www.encodeproject.org/files/ENCFF006YUD/@@download/ENCFF006YUD.tagAlign.gz archived s3://encode-public/2016/03/30/ebbf5feb-102e-4b9e-b698-b9388d3f029d/ENCFF006YUD.tagAlign.gz Lab custom hg19 archived low read length ENCFF145XRU fastq fastq reads ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1140310244 Zhiping Weng, UMass 45b507781f748631369fd51b54a10efa SRA:SRR305034 https://www.encodeproject.org/files/ENCFF145XRU/@@download/ENCFF145XRU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/19/53653c9f-7adb-423a-9929-fa247add0109/ENCFF145XRU.fastq.gz low read length ENCFF414ERU bam bam unfiltered alignments GRCh38 ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF145XRU/ 1394395560 ENCODE Processing Pipeline f08fd98bdb240380debfdc53d72954ec https://www.encodeproject.org/files/ENCFF414ERU/@@download/ENCFF414ERU.bam released s3://encode-public/2020/10/08/7f8bd0f4-3dd1-4981-9a59-26c895b73f1b/ENCFF414ERU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF686HYV bam bam unfiltered alignments GRCh38 ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF145XRU/ 1438874458 ENCODE Processing Pipeline 7a7c7dd6d53475ba38edf7ce6c9acd82 https://www.encodeproject.org/files/ENCFF686HYV/@@download/ENCFF686HYV.bam released s3://encode-public/2016/12/19/bedd792d-8424-4358-b9b8-f58974dd272d/ENCFF686HYV.bam ENCODE3 GRCh38 archived low read length ENCFF270UQK bam bam unfiltered alignments hg19 ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF145XRU/ 1432312345 ENCODE Processing Pipeline a2368b10201251c38e6df817edefe74f https://www.encodeproject.org/files/ENCFF270UQK/@@download/ENCFF270UQK.bam released s3://encode-public/2016/12/19/654d8288-d9af-4898-82cd-3f79ef66e435/ENCFF270UQK.bam ENCODE3 hg19 archived low read length ENCFF996SEF bam bam alignments GRCh38 ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF145XRU/ 871771712 ENCODE Processing Pipeline 0e1623cec53855e54f2665531d032a95 https://www.encodeproject.org/files/ENCFF996SEF/@@download/ENCFF996SEF.bam released s3://encode-public/2016/12/19/17d7fb6f-8517-4451-a064-b7488843b838/ENCFF996SEF.bam ENCODE3 GRCh38 archived low read length ENCFF177OHO bam bam alignments hg19 ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF145XRU/ 871948851 ENCODE Processing Pipeline 0b25f9cae3979cace19cee2395fe269b https://www.encodeproject.org/files/ENCFF177OHO/@@download/ENCFF177OHO.bam released s3://encode-public/2016/12/19/f49589f2-0105-42b5-a4ec-1430d896c11f/ENCFF177OHO.bam ENCODE3 hg19 archived low read length ENCFF564CYB bam bam alignments GRCh38 ENCSR893CBH Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007098 iPS DF 6.9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF145XRU/ 959938769 ENCODE Processing Pipeline e2a6a0b4eb833e19462a77ef5f800934 https://www.encodeproject.org/files/ENCFF564CYB/@@download/ENCFF564CYB.bam released s3://encode-public/2020/10/08/54e5f9e6-5218-40e6-aa6e-5d230f1b9d48/ENCFF564CYB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF783DSN fastq fastq reads ENCSR974LPR Control ChIP-seq /fly-donors/ENCDO594GNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43572/'], '@type': ['Target', 'Item'], 'name': 'Sry-δ-dmelanogaster', 'label': 'Sry-δ', '@id': '/targets/Sry-%CE%B4-dmelanogaster/', 'title': 'Sry-δ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f3e1f9a2-cfd4-4009-8d66-ea7f2ba768fa', 'status': 'released'} dm3 3R 25856439 25878736 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1321770469 Kevin White, UChicago 731058320e90f07c7af2dc845a3d5f83 https://www.encodeproject.org/files/ENCFF783DSN/@@download/ENCFF783DSN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/ae209076-59ff-4964-8238-0ba26c4cd4fb/ENCFF783DSN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF250KKN bam bam alignments dm3 ENCSR974LPR Control ChIP-seq /fly-donors/ENCDO594GNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43572/'], '@type': ['Target', 'Item'], 'name': 'Sry-δ-dmelanogaster', 'label': 'Sry-δ', '@id': '/targets/Sry-%CE%B4-dmelanogaster/', 'title': 'Sry-δ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f3e1f9a2-cfd4-4009-8d66-ea7f2ba768fa', 'status': 'released'} dm3 3R 25856439 25878736 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF783DSN/ 1902672760 Kevin White, UChicago 6916969b044faf06b1209ef474e73574 https://www.encodeproject.org/files/ENCFF250KKN/@@download/ENCFF250KKN.bam released s3://encode-public/2015/08/03/3eb0a0f6-ea18-4d0d-9abc-fe36c3089286/ENCFF250KKN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF803LWP bigWig bigWig signal of unique reads dm3 ENCSR974LPR Control ChIP-seq /fly-donors/ENCDO594GNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43572/'], '@type': ['Target', 'Item'], 'name': 'Sry-δ-dmelanogaster', 'label': 'Sry-δ', '@id': '/targets/Sry-%CE%B4-dmelanogaster/', 'title': 'Sry-δ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f3e1f9a2-cfd4-4009-8d66-ea7f2ba768fa', 'status': 'released'} dm3 3R 25856439 25878736 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF250KKN/ 15689706 Kevin White, UChicago 9691f4d46b3bdbc5e4c16836774988fb https://www.encodeproject.org/files/ENCFF803LWP/@@download/ENCFF803LWP.bigWig released s3://encode-public/2015/10/06/2c8f920c-c288-4032-a47c-9e66bc8d226f/ENCFF803LWP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF324WXY bigWig bigWig read-depth normalized signal dm3 ENCSR974LPR Control ChIP-seq /fly-donors/ENCDO594GNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43572/'], '@type': ['Target', 'Item'], 'name': 'Sry-δ-dmelanogaster', 'label': 'Sry-δ', '@id': '/targets/Sry-%CE%B4-dmelanogaster/', 'title': 'Sry-δ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f3e1f9a2-cfd4-4009-8d66-ea7f2ba768fa', 'status': 'released'} dm3 3R 25856439 25878736 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF250KKN/ 15652820 Kevin White, UChicago 1c49dfac85d215f2590c21ea2d2ba8ac https://www.encodeproject.org/files/ENCFF324WXY/@@download/ENCFF324WXY.bigWig released s3://encode-public/2015/10/06/25c35b7f-4e5c-4198-87f2-2ffaacac9b92/ENCFF324WXY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF331TQB bam bam alignments dm6 ENCSR974LPR Control ChIP-seq /fly-donors/ENCDO594GNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43572/'], '@type': ['Target', 'Item'], 'name': 'Sry-δ-dmelanogaster', 'label': 'Sry-δ', '@id': '/targets/Sry-%CE%B4-dmelanogaster/', 'title': 'Sry-δ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f3e1f9a2-cfd4-4009-8d66-ea7f2ba768fa', 'status': 'released'} dm3 3R 25856439 25878736 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF783DSN/ 1896709070 Kevin White, UChicago 01d90bb470c8ef9cbbad1f937a2da3e2 https://www.encodeproject.org/files/ENCFF331TQB/@@download/ENCFF331TQB.bam released s3://encode-public/2016/04/22/6ccdc877-2ed1-46b6-ac7f-beb413394766/ENCFF331TQB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF186NYG bigWig bigWig read-depth normalized signal dm6 ENCSR974LPR Control ChIP-seq /fly-donors/ENCDO594GNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43572/'], '@type': ['Target', 'Item'], 'name': 'Sry-δ-dmelanogaster', 'label': 'Sry-δ', '@id': '/targets/Sry-%CE%B4-dmelanogaster/', 'title': 'Sry-δ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f3e1f9a2-cfd4-4009-8d66-ea7f2ba768fa', 'status': 'released'} dm3 3R 25856439 25878736 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF331TQB/ 17673942 Kevin White, UChicago 8fef3f471b35b133e978985e36aa05cf https://www.encodeproject.org/files/ENCFF186NYG/@@download/ENCFF186NYG.bigWig released s3://encode-public/2016/06/20/9aff6cf5-c8c3-4a64-ae38-a12d00baa04a/ENCFF186NYG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF485TVE bigWig bigWig signal of unique reads dm6 ENCSR974LPR Control ChIP-seq /fly-donors/ENCDO594GNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43572/'], '@type': ['Target', 'Item'], 'name': 'Sry-δ-dmelanogaster', 'label': 'Sry-δ', '@id': '/targets/Sry-%CE%B4-dmelanogaster/', 'title': 'Sry-δ (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f3e1f9a2-cfd4-4009-8d66-ea7f2ba768fa', 'status': 'released'} dm3 3R 25856439 25878736 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF331TQB/ 17719672 Kevin White, UChicago 47000fa6c22d2a27b6c47a5031c1e002 https://www.encodeproject.org/files/ENCFF485TVE/@@download/ENCFF485TVE.bigWig released s3://encode-public/2016/06/20/a3dd25a3-aeed-4179-a7f6-b1e65c742c25/ENCFF485TVE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF675VOP fastq fastq reads ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 192975938 Michael Snyder, Stanford f0f1650e50d147a29353be53db88c811 https://www.encodeproject.org/files/ENCFF675VOP/@@download/ENCFF675VOP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/80db5960-a920-4c63-9c1b-5a3a5f62b033/ENCFF675VOP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF351AFM fastq fastq reads ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 205000995 Michael Snyder, Stanford 48beefd02aec51ec9ea22c4f2822e230 https://www.encodeproject.org/files/ENCFF351AFM/@@download/ENCFF351AFM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/efee9519-29da-4fff-9c96-1fcd993d3b62/ENCFF351AFM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF799UXV bam bam alignments ce10 ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF351AFM/, /files/ENCFF675VOP/, /files/ENCFF987UMF/ 522297157 Kevin White, UChicago 07e0d1c3ba214972f0c4196f2b5d049c https://www.encodeproject.org/files/ENCFF799UXV/@@download/ENCFF799UXV.bam released s3://encode-public/2016/10/18/90f8167c-46c1-4857-993e-69fd9bb3d793/ENCFF799UXV.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF184YGL bam bam alignments ce11 ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF351AFM/, /files/ENCFF675VOP/, /files/ENCFF586MOL/ 522890157 Kevin White, UChicago 41ba2b3207b550852546632167f5f60b https://www.encodeproject.org/files/ENCFF184YGL/@@download/ENCFF184YGL.bam released s3://encode-public/2016/10/18/b529eeeb-dfcf-4cca-9cdf-31ea40234063/ENCFF184YGL.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF412PMO bigWig bigWig signal of unique reads ce10 ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF799UXV/ 9996403 Kevin White, UChicago a62e5354c33973b71ae32cf95a17a9e8 https://www.encodeproject.org/files/ENCFF412PMO/@@download/ENCFF412PMO.bigWig released s3://encode-public/2016/10/20/5bb130ce-1298-4706-9225-c4ec756c9a8c/ENCFF412PMO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF626TOW bigWig bigWig read-depth normalized signal ce10 ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF799UXV/ 10035206 Kevin White, UChicago 9d99ab0513d6865f3657f7ddb54bbbbd https://www.encodeproject.org/files/ENCFF626TOW/@@download/ENCFF626TOW.bigWig released s3://encode-public/2016/10/20/a0d22bc7-8b77-43c9-9c42-04280c0e2063/ENCFF626TOW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF782BCJ bigWig bigWig read-depth normalized signal ce11 ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF184YGL/ 10033097 Kevin White, UChicago 3fb9c9a53eb0e8a85d7ee82f24f7ee0a https://www.encodeproject.org/files/ENCFF782BCJ/@@download/ENCFF782BCJ.bigWig released s3://encode-public/2016/10/20/eaba0386-cac4-4a3a-93b8-2d14497595b1/ENCFF782BCJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF728QJV bigWig bigWig signal of unique reads ce11 ENCSR570PSN Control ChIP-seq /worm-donors/ENCDO180UEM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182061/'], '@type': ['Target', 'Item'], 'name': 'gmeb-1-celegans', 'label': 'gmeb-1', '@id': '/targets/gmeb-1-celegans/', 'title': 'gmeb-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '272ba140-e98d-413c-8dd7-f32174b38ddf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF184YGL/ 9996180 Kevin White, UChicago dbe2e3e0ac89a1815f1a3da8015e5b57 https://www.encodeproject.org/files/ENCFF728QJV/@@download/ENCFF728QJV.bigWig released s3://encode-public/2016/10/20/a6083fbc-b876-4c8c-a60d-3c0e32abec8a/ENCFF728QJV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF967YPA fastq fastq reads ENCSR255TJG Control ChIP-seq /fly-donors/ENCDO061CDZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33823/'], '@type': ['Target', 'Item'], 'name': 'dsf-dmelanogaster', 'label': 'dsf', '@id': '/targets/dsf-dmelanogaster/', 'title': 'dsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9107b44e-c1a8-486e-9fa7-5b35d0a546b1', 'status': 'released'} dm3 2L 5909305 6004342 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 50 single-ended 324718845 Kevin White, UChicago c9d211c8a23738721a45789e0290e337 https://www.encodeproject.org/files/ENCFF967YPA/@@download/ENCFF967YPA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/dca1becb-4d43-4717-b8ea-e6abd0a4a019/ENCFF967YPA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF931GAV bam bam alignments dm3 ENCSR255TJG Control ChIP-seq /fly-donors/ENCDO061CDZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33823/'], '@type': ['Target', 'Item'], 'name': 'dsf-dmelanogaster', 'label': 'dsf', '@id': '/targets/dsf-dmelanogaster/', 'title': 'dsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9107b44e-c1a8-486e-9fa7-5b35d0a546b1', 'status': 'released'} dm3 2L 5909305 6004342 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF967YPA/ 448926812 Kevin White, UChicago c626c0585ed94160c386b5781734f03b https://www.encodeproject.org/files/ENCFF931GAV/@@download/ENCFF931GAV.bam released s3://encode-public/2015/08/03/73d3bd63-3318-4c48-888f-7cad10aa2782/ENCFF931GAV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF860KMR bigWig bigWig read-depth normalized signal dm3 ENCSR255TJG Control ChIP-seq /fly-donors/ENCDO061CDZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33823/'], '@type': ['Target', 'Item'], 'name': 'dsf-dmelanogaster', 'label': 'dsf', '@id': '/targets/dsf-dmelanogaster/', 'title': 'dsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9107b44e-c1a8-486e-9fa7-5b35d0a546b1', 'status': 'released'} dm3 2L 5909305 6004342 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF931GAV/ 15044881 Kevin White, UChicago 235244488e85e0e468776a61b72f2148 https://www.encodeproject.org/files/ENCFF860KMR/@@download/ENCFF860KMR.bigWig released s3://encode-public/2015/10/06/1b360bd3-61f9-49de-b139-0fde668c8ad7/ENCFF860KMR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF356WAS bigWig bigWig signal of unique reads dm3 ENCSR255TJG Control ChIP-seq /fly-donors/ENCDO061CDZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33823/'], '@type': ['Target', 'Item'], 'name': 'dsf-dmelanogaster', 'label': 'dsf', '@id': '/targets/dsf-dmelanogaster/', 'title': 'dsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9107b44e-c1a8-486e-9fa7-5b35d0a546b1', 'status': 'released'} dm3 2L 5909305 6004342 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF931GAV/ 15054608 Kevin White, UChicago 11854d21202ab480dbff06560abbcdad https://www.encodeproject.org/files/ENCFF356WAS/@@download/ENCFF356WAS.bigWig released s3://encode-public/2015/10/06/f8699a1d-191d-43f1-b0bd-84b73a9169b3/ENCFF356WAS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF113NOB bam bam alignments dm6 ENCSR255TJG Control ChIP-seq /fly-donors/ENCDO061CDZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33823/'], '@type': ['Target', 'Item'], 'name': 'dsf-dmelanogaster', 'label': 'dsf', '@id': '/targets/dsf-dmelanogaster/', 'title': 'dsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9107b44e-c1a8-486e-9fa7-5b35d0a546b1', 'status': 'released'} dm3 2L 5909305 6004342 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF967YPA/ 447649365 Kevin White, UChicago 0484452a5c8323f1d1958d48a18eaa89 https://www.encodeproject.org/files/ENCFF113NOB/@@download/ENCFF113NOB.bam released s3://encode-public/2016/04/21/9e3fdf1d-b335-4dc4-9b73-9428d9ac9af3/ENCFF113NOB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF348RSI bigWig bigWig read-depth normalized signal dm6 ENCSR255TJG Control ChIP-seq /fly-donors/ENCDO061CDZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33823/'], '@type': ['Target', 'Item'], 'name': 'dsf-dmelanogaster', 'label': 'dsf', '@id': '/targets/dsf-dmelanogaster/', 'title': 'dsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9107b44e-c1a8-486e-9fa7-5b35d0a546b1', 'status': 'released'} dm3 2L 5909305 6004342 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF113NOB/ 17099884 Kevin White, UChicago 94e03c87f9f29a4b87d9df03acbbbf5c https://www.encodeproject.org/files/ENCFF348RSI/@@download/ENCFF348RSI.bigWig released s3://encode-public/2016/06/21/7b85528b-c5f1-4611-b142-ef6c5d33986f/ENCFF348RSI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF783AQN bigWig bigWig signal of unique reads dm6 ENCSR255TJG Control ChIP-seq /fly-donors/ENCDO061CDZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33823/'], '@type': ['Target', 'Item'], 'name': 'dsf-dmelanogaster', 'label': 'dsf', '@id': '/targets/dsf-dmelanogaster/', 'title': 'dsf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9107b44e-c1a8-486e-9fa7-5b35d0a546b1', 'status': 'released'} dm3 2L 5909305 6004342 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF113NOB/ 17108365 Kevin White, UChicago 13ec7eedd4523ba685ee34034ba51527 https://www.encodeproject.org/files/ENCFF783AQN/@@download/ENCFF783AQN.bigWig released s3://encode-public/2016/06/21/b03d21b6-0e36-45b3-beb1-89f0e3d62baf/ENCFF783AQN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF562MBU fastq fastq reads ENCSR117DPS Control ChIP-seq /fly-donors/ENCDO759OFF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42226/'], '@type': ['Target', 'Item'], 'name': 'fru-dmelanogaster', 'label': 'fru', '@id': '/targets/fru-dmelanogaster/', 'title': 'fru (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '137e63ff-f6ac-479f-a582-17dcdf236045', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 374564288 Kevin White, UChicago 91932ed574748f9abe21cfeddd6fcb57 https://www.encodeproject.org/files/ENCFF562MBU/@@download/ENCFF562MBU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/c45a8192-a63e-4849-9193-1cf1bc39895d/ENCFF562MBU.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF878LMH bam bam alignments dm3 ENCSR117DPS Control ChIP-seq /fly-donors/ENCDO759OFF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42226/'], '@type': ['Target', 'Item'], 'name': 'fru-dmelanogaster', 'label': 'fru', '@id': '/targets/fru-dmelanogaster/', 'title': 'fru (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '137e63ff-f6ac-479f-a582-17dcdf236045', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF562MBU/ 554884045 Kevin White, UChicago 15d5e7be8c89cf44bd8a2c296401a8e9 https://www.encodeproject.org/files/ENCFF878LMH/@@download/ENCFF878LMH.bam released s3://encode-public/2015/08/03/3d0d9240-1628-4a57-ad81-2c281c9452b1/ENCFF878LMH.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF310JDQ bigWig bigWig signal of unique reads dm3 ENCSR117DPS Control ChIP-seq /fly-donors/ENCDO759OFF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42226/'], '@type': ['Target', 'Item'], 'name': 'fru-dmelanogaster', 'label': 'fru', '@id': '/targets/fru-dmelanogaster/', 'title': 'fru (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '137e63ff-f6ac-479f-a582-17dcdf236045', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF878LMH/ 15057170 Kevin White, UChicago 766b90ce80dfcf827876e1338bab3c87 https://www.encodeproject.org/files/ENCFF310JDQ/@@download/ENCFF310JDQ.bigWig released s3://encode-public/2015/10/06/5f55555f-a8a9-4980-a171-82f816fd5cef/ENCFF310JDQ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF901JZB bigWig bigWig read-depth normalized signal dm3 ENCSR117DPS Control ChIP-seq /fly-donors/ENCDO759OFF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42226/'], '@type': ['Target', 'Item'], 'name': 'fru-dmelanogaster', 'label': 'fru', '@id': '/targets/fru-dmelanogaster/', 'title': 'fru (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '137e63ff-f6ac-479f-a582-17dcdf236045', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF878LMH/ 15060570 Kevin White, UChicago dac0f429c3b90be116dfcea4083347a5 https://www.encodeproject.org/files/ENCFF901JZB/@@download/ENCFF901JZB.bigWig released s3://encode-public/2015/10/06/480d39d2-cc1e-432e-98a8-ba4684d0c174/ENCFF901JZB.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF641XVG bam bam alignments dm6 ENCSR117DPS Control ChIP-seq /fly-donors/ENCDO759OFF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42226/'], '@type': ['Target', 'Item'], 'name': 'fru-dmelanogaster', 'label': 'fru', '@id': '/targets/fru-dmelanogaster/', 'title': 'fru (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '137e63ff-f6ac-479f-a582-17dcdf236045', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF562MBU/ 552307917 Kevin White, UChicago 499f8460932bc264581fdee890c8d812 https://www.encodeproject.org/files/ENCFF641XVG/@@download/ENCFF641XVG.bam released s3://encode-public/2016/04/21/a92a6b4d-dea7-4009-a919-3d31d6b7b0f7/ENCFF641XVG.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF202VIS bigWig bigWig signal of unique reads dm6 ENCSR117DPS Control ChIP-seq /fly-donors/ENCDO759OFF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42226/'], '@type': ['Target', 'Item'], 'name': 'fru-dmelanogaster', 'label': 'fru', '@id': '/targets/fru-dmelanogaster/', 'title': 'fru (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '137e63ff-f6ac-479f-a582-17dcdf236045', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF641XVG/ 17096336 Kevin White, UChicago 5a6d9ad1d58b5daeb21f332f303eea96 https://www.encodeproject.org/files/ENCFF202VIS/@@download/ENCFF202VIS.bigWig released s3://encode-public/2016/06/20/6c47a910-3278-4e9f-8662-4d1127eb249b/ENCFF202VIS.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF124IPZ bigWig bigWig read-depth normalized signal dm6 ENCSR117DPS Control ChIP-seq /fly-donors/ENCDO759OFF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42226/'], '@type': ['Target', 'Item'], 'name': 'fru-dmelanogaster', 'label': 'fru', '@id': '/targets/fru-dmelanogaster/', 'title': 'fru (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '137e63ff-f6ac-479f-a582-17dcdf236045', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF641XVG/ 17096990 Kevin White, UChicago 265dccf8d2cdbb913f2abfa123add648 https://www.encodeproject.org/files/ENCFF124IPZ/@@download/ENCFF124IPZ.bigWig released s3://encode-public/2016/06/20/d598a770-95ea-4a1f-90f7-2763e9bbda8c/ENCFF124IPZ.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF406MXX fastq fastq reads ENCSR846WHG Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1646011012 Kevin White, UChicago b3d1bed920b4c96679d664de816c9893 https://www.encodeproject.org/files/ENCFF406MXX/@@download/ENCFF406MXX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/24/47684f7d-3d42-48f0-8254-5190aab57aed/ENCFF406MXX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF885NVR bam bam alignments dm3 ENCSR846WHG Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF406MXX/ 2005883718 Kevin White, UChicago 70717ba428ef29ade2f57547b472cbe2 https://www.encodeproject.org/files/ENCFF885NVR/@@download/ENCFF885NVR.bam released s3://encode-public/2017/06/19/a05199a0-eb89-4339-9e98-eb29f1a0bcb6/ENCFF885NVR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF874VCM bam bam alignments dm6 ENCSR846WHG Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF406MXX/ 2000752684 Kevin White, UChicago a883996ff6e6ccf4c4e515654f13f3e9 https://www.encodeproject.org/files/ENCFF874VCM/@@download/ENCFF874VCM.bam released s3://encode-public/2017/06/28/85a15147-fb30-47a1-aa5f-bc4ad914c0a8/ENCFF874VCM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF787ZKR bigWig bigWig signal of unique reads dm3 ENCSR846WHG Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF885NVR/ 15790778 Kevin White, UChicago fdf6dbf8c89b6a53730b641101d79a8e https://www.encodeproject.org/files/ENCFF787ZKR/@@download/ENCFF787ZKR.bigWig released s3://encode-public/2017/06/29/66b208a3-f9a8-43d4-8ade-f6f94c9cd77d/ENCFF787ZKR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF998VEN bigWig bigWig read-depth normalized signal dm3 ENCSR846WHG Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF885NVR/ 15871886 Kevin White, UChicago 57ac7ea83531b54ce7e996ffae939200 https://www.encodeproject.org/files/ENCFF998VEN/@@download/ENCFF998VEN.bigWig released s3://encode-public/2017/06/29/da29b546-ec70-41e1-b7f0-23d88054ec1d/ENCFF998VEN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF982ODT bigWig bigWig read-depth normalized signal dm6 ENCSR846WHG Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF874VCM/ 17771130 Kevin White, UChicago 9b854b47f2ebed94e804219d320636b0 https://www.encodeproject.org/files/ENCFF982ODT/@@download/ENCFF982ODT.bigWig released s3://encode-public/2017/06/30/02a958e4-bd42-4c98-b2af-a81f353eb589/ENCFF982ODT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF625SQB bigWig bigWig signal of unique reads dm6 ENCSR846WHG Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF874VCM/ 17650891 Kevin White, UChicago 46dfe709abcb2988f0ce076d6b0ba477 https://www.encodeproject.org/files/ENCFF625SQB/@@download/ENCFF625SQB.bigWig released s3://encode-public/2017/06/30/233ac7c7-6d4b-49fc-a6fb-e8cfd297cd1c/ENCFF625SQB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF585TUX fastq fastq reads ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 210614501 Michael Snyder, Stanford 7c4fd233ee2468a330e177184239bd3a https://www.encodeproject.org/files/ENCFF585TUX/@@download/ENCFF585TUX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a62aa7f9-d94f-410d-85cd-754edc1e7493/ENCFF585TUX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF169OJW fastq fastq reads ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 197374134 Michael Snyder, Stanford 141cfe1490dd62670fe771de7bd6e7c9 https://www.encodeproject.org/files/ENCFF169OJW/@@download/ENCFF169OJW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/77f4283c-521d-4155-ab1f-edc603eec1ed/ENCFF169OJW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF859BTW bam bam alignments ce10 ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF585TUX/, /files/ENCFF169OJW/, /files/ENCFF987UMF/ 464426138 Kevin White, UChicago 41107db7ec73a2fdec991037a3039bc1 https://www.encodeproject.org/files/ENCFF859BTW/@@download/ENCFF859BTW.bam released s3://encode-public/2016/10/18/a34dfb85-5624-45d2-a657-f4f246ac583e/ENCFF859BTW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF780RFB bam bam alignments ce11 ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF585TUX/, /files/ENCFF169OJW/, /files/ENCFF586MOL/ 464802891 Kevin White, UChicago 6b03d0408abf783137907a95ed52cb35 https://www.encodeproject.org/files/ENCFF780RFB/@@download/ENCFF780RFB.bam released s3://encode-public/2016/10/19/0b80c33f-ca4d-434a-81dd-b88e198840e0/ENCFF780RFB.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF406DKH bigWig bigWig signal of unique reads ce10 ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF859BTW/ 10052337 Kevin White, UChicago 327e1b3d842a77acde7ad991d71314f8 https://www.encodeproject.org/files/ENCFF406DKH/@@download/ENCFF406DKH.bigWig released s3://encode-public/2016/10/20/43866897-4907-4f54-a3cb-46d1083a3450/ENCFF406DKH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF528HII bigWig bigWig read-depth normalized signal ce10 ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF859BTW/ 10040026 Kevin White, UChicago 3e774fa07b7e94f8190b6c469765c68f https://www.encodeproject.org/files/ENCFF528HII/@@download/ENCFF528HII.bigWig released s3://encode-public/2016/10/20/29dd1292-7142-4422-a4c0-57aea8c01baf/ENCFF528HII.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF671YZC bigWig bigWig read-depth normalized signal ce11 ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF780RFB/ 10040025 Kevin White, UChicago e357cd881d32e20f9ca82200eed565e6 https://www.encodeproject.org/files/ENCFF671YZC/@@download/ENCFF671YZC.bigWig released s3://encode-public/2016/10/21/752cc262-8cf7-4fb3-86c9-74996e6e1232/ENCFF671YZC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF778RTE bigWig bigWig signal of unique reads ce11 ENCSR566WSV Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF780RFB/ 10049372 Kevin White, UChicago 9fed4cbba4c20f78d13a29b5e41061d9 https://www.encodeproject.org/files/ENCFF778RTE/@@download/ENCFF778RTE.bigWig released s3://encode-public/2016/10/21/56639ad6-9826-4a94-aa1a-7f6272a11c4a/ENCFF778RTE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF140KOZ fastq fastq reads ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 577175562 Kevin White, UChicago 2b344a4deeffde69d70cde3b15f24b39 https://www.encodeproject.org/files/ENCFF140KOZ/@@download/ENCFF140KOZ.fastq.gz Illumina Genome Analyzer /files/ENCFF446CED/ released s3://encode-public/2017/06/15/e7d0b106-42bb-4d04-be95-a2d594d77831/ENCFF140KOZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF471SQU fastq fastq reads ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 2 2_1 36 single-ended 466509685 Kevin White, UChicago 640bc01d3f7c3bf9e33ef0c6e1597678 https://www.encodeproject.org/files/ENCFF471SQU/@@download/ENCFF471SQU.fastq.gz Illumina Genome Analyzer /files/ENCFF446CED/ released s3://encode-public/2017/06/15/eee41505-eb61-44cc-bbfb-56dacc439dac/ENCFF471SQU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF233VTH bam bam alignments dm3 ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 36 /files/ENCFF059UHX/, /files/ENCFF471SQU/, /files/ENCFF140KOZ/ 1289340929 Kevin White, UChicago 1bda0787cf4d5cd51b9097242c871a57 https://www.encodeproject.org/files/ENCFF233VTH/@@download/ENCFF233VTH.bam released s3://encode-public/2017/07/05/c0a86313-0eb3-4140-9b7f-efa808b9906d/ENCFF233VTH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF740CDH bam bam alignments dm6 ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 36 /files/ENCFF479RCH/, /files/ENCFF471SQU/, /files/ENCFF140KOZ/ 1276417051 Kevin White, UChicago 988f00309b4eeb8ed6f8febb33dd3048 https://www.encodeproject.org/files/ENCFF740CDH/@@download/ENCFF740CDH.bam released s3://encode-public/2017/07/06/075eee04-99e2-44d0-852f-228f02d1be29/ENCFF740CDH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF593XVX bigWig bigWig read-depth normalized signal dm3 ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF233VTH/ 15533666 Kevin White, UChicago 55a3146c52bf9d6fac1ba10ea59f1f2e https://www.encodeproject.org/files/ENCFF593XVX/@@download/ENCFF593XVX.bigWig released s3://encode-public/2017/07/06/f2e17588-509b-4b40-a47f-2c57241439ae/ENCFF593XVX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF633MGS bigWig bigWig signal of unique reads dm3 ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF233VTH/ 15529501 Kevin White, UChicago 6b8af7aa2a127bcc7d4cfbab98af0dcc https://www.encodeproject.org/files/ENCFF633MGS/@@download/ENCFF633MGS.bigWig released s3://encode-public/2017/07/06/eb8b93e0-7639-4c86-810d-2791ae79521a/ENCFF633MGS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF280CYI bigWig bigWig read-depth normalized signal dm6 ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF740CDH/ 17700694 Kevin White, UChicago 705f3a64a2df8d3df4bbea628650476f https://www.encodeproject.org/files/ENCFF280CYI/@@download/ENCFF280CYI.bigWig released s3://encode-public/2017/07/07/ed06114e-38b8-4183-9deb-ebc33b498456/ENCFF280CYI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF320DHI bigWig bigWig signal of unique reads dm6 ENCSR535XRN Control ChIP-seq /fly-donors/ENCDO070BAB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35341/'], '@type': ['Target', 'Item'], 'name': 'cad-dmelanogaster', 'label': 'cad', '@id': '/targets/cad-dmelanogaster/', 'title': 'cad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e9a1bb8-90b9-4fa1-84f2-0c009c691b65', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF740CDH/ 17690929 Kevin White, UChicago 6e040f3a098374a95b6a2d64f9191ba4 https://www.encodeproject.org/files/ENCFF320DHI/@@download/ENCFF320DHI.bigWig released s3://encode-public/2017/07/07/78c63415-63a1-4232-a13c-5dbd9b8a38dd/ENCFF320DHI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF115TKB bam bam alignments ce10 ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF334KWX/, /files/ENCFF253LKN/, /files/ENCFF987UMF/ 410619451 Kevin White, UChicago d0aeb4911c1ae12d900018f9d8a8d692 https://www.encodeproject.org/files/ENCFF115TKB/@@download/ENCFF115TKB.bam released s3://encode-public/2016/10/26/391e9959-4de8-4eb2-8bae-ebcb3f1a09a4/ENCFF115TKB.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF210UHO bam bam alignments ce11 ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF334KWX/, /files/ENCFF253LKN/, /files/ENCFF586MOL/ 411001092 Kevin White, UChicago 946a8ec2efbfb5aab03fc1bdab394583 https://www.encodeproject.org/files/ENCFF210UHO/@@download/ENCFF210UHO.bam released s3://encode-public/2016/10/26/1467028a-58d3-4284-ada1-6c504afe7192/ENCFF210UHO.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF562KPN bigWig bigWig signal of unique reads ce10 ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF115TKB/ 10056665 Kevin White, UChicago 2df9f1a292016ef4da50254b2a5bdef6 https://www.encodeproject.org/files/ENCFF562KPN/@@download/ENCFF562KPN.bigWig released s3://encode-public/2016/10/26/57bd2d93-9717-4f40-b360-c5567e945eb1/ENCFF562KPN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF744DRJ bigWig bigWig read-depth normalized signal ce10 ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF115TKB/ 9996780 Kevin White, UChicago 946f303d60bedf6d036dde12e6400972 https://www.encodeproject.org/files/ENCFF744DRJ/@@download/ENCFF744DRJ.bigWig released s3://encode-public/2016/10/26/0c230888-9511-4d14-966c-c2c4154c0601/ENCFF744DRJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF233WTH bigWig bigWig read-depth normalized signal ce11 ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF210UHO/ 9998391 Kevin White, UChicago 5b77d08d782b839dcbadb56d8496a692 https://www.encodeproject.org/files/ENCFF233WTH/@@download/ENCFF233WTH.bigWig released s3://encode-public/2016/10/26/a1b8101d-0115-45d9-b4f1-411ec1894cd8/ENCFF233WTH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF913ALS bigWig bigWig signal of unique reads ce11 ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF210UHO/ 10055878 Kevin White, UChicago c2cd2cdd97a21e100be2e298b3da9967 https://www.encodeproject.org/files/ENCFF913ALS/@@download/ENCFF913ALS.bigWig released s3://encode-public/2016/10/26/3991f8d1-a4c1-475e-9dd5-1a0d7d93665c/ENCFF913ALS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF253LKN fastq fastq reads ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 2 2_1 33 single-ended 185635400 Kevin White, UChicago f21752be08d6aba3ce5b2ab2ccbca75d https://www.encodeproject.org/files/ENCFF253LKN/@@download/ENCFF253LKN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/25/fc35562f-d3db-4a60-8143-ec4140154d75/ENCFF253LKN.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF334KWX fastq fastq reads ENCSR042QHV Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-22 modENCODE 150-350 1 1_1 33 single-ended 144130485 Kevin White, UChicago c14950587362e5cc65ae695cbbcb84ec https://www.encodeproject.org/files/ENCFF334KWX/@@download/ENCFF334KWX.fastq.gz Illumina Genome Analyzer I released s3://encode-public/2016/10/25/0075ee97-bd22-4a85-8328-8d04ad8c476b/ENCFF334KWX.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF947HET fastq fastq reads ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 136768592 Michael Snyder, Stanford c277fad7ebc1ed4a24f9aae6306170ff https://www.encodeproject.org/files/ENCFF947HET/@@download/ENCFF947HET.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/9ef04db0-f1e4-441e-b301-8c5fba5d671c/ENCFF947HET.fastq.gz ENCFF426IOQ fastq fastq reads ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 150461110 Michael Snyder, Stanford cce517308b1996c2d80213856b8afbe4 https://www.encodeproject.org/files/ENCFF426IOQ/@@download/ENCFF426IOQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/91dea566-4e37-476f-85aa-a07ca184f2ae/ENCFF426IOQ.fastq.gz ENCFF264YMH bam bam alignments ce11 ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF947HET/, /files/ENCFF426IOQ/, /files/ENCFF586MOL/ 380419394 Kevin White, UChicago 29bea037c9ce0f07e66a36bdeae2400a https://www.encodeproject.org/files/ENCFF264YMH/@@download/ENCFF264YMH.bam released s3://encode-public/2018/01/09/40f69c7a-2866-407d-b719-874c62f8c747/ENCFF264YMH.bam Lab custom ce11 released ENCFF016CPY bam bam alignments ce10 ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF947HET/, /files/ENCFF426IOQ/, /files/ENCFF987UMF/ 380006067 Kevin White, UChicago 8db7daf33313705780d4d7dfa476f81e https://www.encodeproject.org/files/ENCFF016CPY/@@download/ENCFF016CPY.bam released s3://encode-public/2018/01/09/cc73c865-bd5d-4b31-8bf0-b567b855e8dc/ENCFF016CPY.bam Lab custom ce10 archived ENCFF733BEO bigWig bigWig read-depth normalized signal ce10 ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF016CPY/ 10060602 Kevin White, UChicago c5fba7f78f42e9b38b6861334d5c6f5e https://www.encodeproject.org/files/ENCFF733BEO/@@download/ENCFF733BEO.bigWig released s3://encode-public/2018/01/09/964f0f93-e015-4ba6-af91-acfc7ce4d81e/ENCFF733BEO.bigWig Lab custom ce10 archived ENCFF421ZEK bigWig bigWig signal of unique reads ce10 ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF016CPY/ 10082362 Kevin White, UChicago a42d53a17d30a16e86076c00de5a7a80 https://www.encodeproject.org/files/ENCFF421ZEK/@@download/ENCFF421ZEK.bigWig released s3://encode-public/2018/01/09/5b4bc30e-2d9d-4376-974d-be9afaebb97c/ENCFF421ZEK.bigWig Lab custom ce10 archived ENCFF599KWW bigWig bigWig signal of unique reads ce11 ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF264YMH/ 10081928 Kevin White, UChicago e3f4551ddb47a26f6f87346b1df50f00 https://www.encodeproject.org/files/ENCFF599KWW/@@download/ENCFF599KWW.bigWig released s3://encode-public/2018/01/09/eeeb21ad-6db5-48dd-ab8a-708a72185e58/ENCFF599KWW.bigWig Lab custom ce11 released ENCFF089PQG bigWig bigWig read-depth normalized signal ce11 ENCSR780YWP Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF264YMH/ 10060222 Kevin White, UChicago 4f924c126c1fd5894deb39c29fc47208 https://www.encodeproject.org/files/ENCFF089PQG/@@download/ENCFF089PQG.bigWig released s3://encode-public/2018/01/09/4ee19e96-6cf1-4182-a99a-9cfe474954b0/ENCFF089PQG.bigWig Lab custom ce11 released ENCFF637HTW fastq fastq reads ENCSR109LQX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 1_1 50 single-ended 1239443130 Richard Myers, HAIB cb6bb8df5c9491a36706904a8aa30b76 SRA:SRR5111114 https://www.encodeproject.org/files/ENCFF637HTW/@@download/ENCFF637HTW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/efeda673-c543-4112-bafb-5c9ef64e0a23/ENCFF637HTW.fastq.gz ENCFF931PQC bam bam unfiltered alignments mm10 ENCSR109LQX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 1_1 50 /files/ENCFF637HTW/, /files/ENCFF018NEO/ 1363267480 ENCODE Processing Pipeline a311f04621fc19c6e4f1e74ee17cac15 https://www.encodeproject.org/files/ENCFF931PQC/@@download/ENCFF931PQC.bam released s3://encode-public/2016/05/20/90f34627-0985-4342-b8f1-5d6a84be7cf2/ENCFF931PQC.bam ENCODE3 mm10 archived ENCFF531KSN bam bam alignments mm10 ENCSR109LQX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-02-02 ENCODE see document 1 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/files/ENCFF637HTW/, /files/ENCFF309GLL/ 1347537704 ENCODE Processing Pipeline 5351f1c119be5315bfff6874a633c92f https://www.encodeproject.org/files/ENCFF253GUF/@@download/ENCFF253GUF.bam released s3://encode-public/2020/10/08/0222131f-6b43-4d3e-9157-6c831f6b7989/ENCFF253GUF.bam ENCODE4 v1.5.1 mm10 released ENCFF199ORG fastq fastq reads ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 770947500 Tim Reddy, Duke 8a879964371da26f08395c0a1164887e SRA:SRR5093007 https://www.encodeproject.org/files/ENCFF199ORG/@@download/ENCFF199ORG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/ec3a18f4-256f-47bc-bcb9-2dd6c48bb280/ENCFF199ORG.fastq.gz ENCFF044FEJ fastq fastq reads ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 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/files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF199ORG/ 853197199 Tim Reddy, Duke b0175b6e2172724b33b64a2862b57c4b https://www.encodeproject.org/files/ENCFF395XMG/@@download/ENCFF395XMG.bam released s3://encode-public/2016/10/19/c9627aa3-7644-438c-97a1-a496ca400895/ENCFF395XMG.bam Lab custom GRCh38 archived ENCFF996NUX bam bam alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF255TSO/ 627860438 Tim Reddy, Duke 2dff227b162ae819012f65bef611ffa6 https://www.encodeproject.org/files/ENCFF996NUX/@@download/ENCFF996NUX.bam released s3://encode-public/2016/10/19/a3b57079-7a90-477f-a6e7-253b1358cc9b/ENCFF996NUX.bam Lab custom GRCh38 archived ENCFF801QPB bam bam alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF044FEJ/ 940673351 Tim Reddy, Duke 9c7af8f7a014f87affe2398369bcef3c https://www.encodeproject.org/files/ENCFF801QPB/@@download/ENCFF801QPB.bam released s3://encode-public/2016/10/19/bd46d568-80e4-4bdc-9a6d-0ce4956a2b08/ENCFF801QPB.bam Lab custom GRCh38 archived ENCFF439GGC bam bam unfiltered alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF199ORG/, /files/ENCFF110MCL/ 1050451229 ENCODE Processing Pipeline f2d0af43c4955e8871c422c105a7d97f https://www.encodeproject.org/files/ENCFF439GGC/@@download/ENCFF439GGC.bam released s3://encode-public/2020/11/13/fbe4d848-f8c5-41f3-af7f-643f1b803ab4/ENCFF439GGC.bam ENCODE4 v1.6.1 GRCh38 released ENCFF392JXG bam bam alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF199ORG/, /files/ENCFF110MCL/ 893218354 ENCODE Processing Pipeline d9217eab05cca14fd4047663730536fc https://www.encodeproject.org/files/ENCFF392JXG/@@download/ENCFF392JXG.bam released s3://encode-public/2020/11/13/b86b8cb3-afb6-4e9c-82c7-ade762a4d156/ENCFF392JXG.bam ENCODE4 v1.6.1 GRCh38 released ENCFF036CHB bam bam unfiltered alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF255TSO/, /files/ENCFF110MCL/ 786817252 ENCODE Processing Pipeline e82c34da219e5f706e02feb691256f5c https://www.encodeproject.org/files/ENCFF036CHB/@@download/ENCFF036CHB.bam released s3://encode-public/2020/11/13/99717cd0-3c53-45ea-b6fb-ab960ce18c0b/ENCFF036CHB.bam ENCODE4 v1.6.1 GRCh38 released ENCFF464RCS bam bam alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF255TSO/, /files/ENCFF110MCL/ 639704512 ENCODE Processing Pipeline 97ed3a15a08b9c183b0cd9945c713cbe https://www.encodeproject.org/files/ENCFF464RCS/@@download/ENCFF464RCS.bam released s3://encode-public/2020/11/13/c1da42b4-9842-40a5-8c1b-dfe21ae5113c/ENCFF464RCS.bam ENCODE4 v1.6.1 GRCh38 released ENCFF969MWE bam bam unfiltered alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF044FEJ/, /files/ENCFF110MCL/ 1166410513 ENCODE Processing Pipeline 7ad1a03f8c957358970210714942503f https://www.encodeproject.org/files/ENCFF969MWE/@@download/ENCFF969MWE.bam released s3://encode-public/2020/11/13/99dc2245-3912-44d2-a14c-46412683854b/ENCFF969MWE.bam ENCODE4 v1.6.1 GRCh38 released ENCFF591NZJ bam bam alignments GRCh38 ENCSR600LQZ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF044FEJ/, /files/ENCFF110MCL/ 987776946 ENCODE Processing Pipeline 8e2dd46b5758a45f79d97057bb043cb9 https://www.encodeproject.org/files/ENCFF591NZJ/@@download/ENCFF591NZJ.bam released s3://encode-public/2020/11/13/ba0d6cad-cea6-46fd-b199-1beff669fe35/ENCFF591NZJ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF355CRY fastq fastq reads ENCSR676WCI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF860HKS/ 2489412910 Michael Snyder, Stanford 3e17ac213b513259dc866aa10ae1f697 SRA:SRR6213669 https://www.encodeproject.org/files/ENCFF355CRY/@@download/ENCFF355CRY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/02/7eca9da2-be93-4707-ba5d-f7d4b4581456/ENCFF355CRY.fastq.gz ENCFF860HKS fastq fastq reads ENCSR676WCI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF355CRY/ 2440914867 Michael Snyder, Stanford 2717ffd54fe6edc1962a14483dc6522e SRA:SRR6213669 https://www.encodeproject.org/files/ENCFF860HKS/@@download/ENCFF860HKS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/02/2c35439f-15b5-40a4-a95c-0137c925cc99/ENCFF860HKS.fastq.gz ENCFF800FLW bam bam unfiltered alignments hg19 ENCSR676WCI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF355CRY/, /files/ENCFF807MUK/, /files/ENCFF860HKS/ 5577687730 ENCODE Processing Pipeline 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ENCODE Processing Pipeline ef88fa8ad09ad3c454ee2fd0ce2c4da6 https://www.encodeproject.org/files/ENCFF435OCU/@@download/ENCFF435OCU.bam released s3://encode-public/2016/11/25/c4474411-b804-44a4-a7f2-7537fd7dd9b3/ENCFF435OCU.bam ENCODE3 hg19 archived ENCFF395VIK bam bam alignments GRCh38 ENCSR676WCI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF355CRY/, /files/ENCFF643CGH/, /files/ENCFF860HKS/ 4641240858 ENCODE Processing Pipeline ecbf8141710c772e4ddaed1f4ba6fc71 https://www.encodeproject.org/files/ENCFF395VIK/@@download/ENCFF395VIK.bam released s3://encode-public/2016/11/25/08874ab5-6cae-4fc4-b96b-baa6a93aa2d2/ENCFF395VIK.bam ENCODE3 GRCh38 archived ENCFF159WCQ bam bam unfiltered alignments GRCh38 ENCSR676WCI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF355CRY/, /files/ENCFF860HKS/ 5705299692 ENCODE Processing Pipeline 7396bed7a13d7d578edcbfcc6307f46c https://www.encodeproject.org/files/ENCFF159WCQ/@@download/ENCFF159WCQ.bam released s3://encode-public/2020/06/02/4ed1df38-5100-49f1-bfa9-3eb5a3cb1a1f/ENCFF159WCQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF280ZBT bam bam alignments GRCh38 ENCSR676WCI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF355CRY/, /files/ENCFF860HKS/ 4399993999 ENCODE Processing Pipeline e66eeb04353a569aee0bfdf3529547fb https://www.encodeproject.org/files/ENCFF280ZBT/@@download/ENCFF280ZBT.bam released s3://encode-public/2020/06/02/73455dca-b98a-4bd9-9cf6-2f31e11c4287/ENCFF280ZBT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF344SHX fastq fastq reads ENCSR730QNM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 3362373764 Richard Myers, HAIB ebec8b948b671d2460dc90194e83d68b SRA:SRR14103292 https://www.encodeproject.org/files/ENCFF344SHX/@@download/ENCFF344SHX.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/07/08/3983f088-8c2a-4961-98e6-e169e8e20542/ENCFF344SHX.fastq.gz mild to moderate bottlenecking ENCFF371KLJ bam bam unfiltered alignments GRCh38 ENCSR730QNM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF344SHX/ 3027763070 ENCODE Processing Pipeline bf7ccd70f9c5f5b4bcb4d16dd7dc0867 https://www.encodeproject.org/files/ENCFF371KLJ/@@download/ENCFF371KLJ.bam released s3://encode-public/2020/04/20/e638597f-c9b1-4adc-a6cb-18fcbaf1a753/ENCFF371KLJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF294NEM bam bam alignments GRCh38 ENCSR730QNM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF344SHX/ 1812098360 ENCODE Processing Pipeline c103b6f88cfa28dc66ac7d11041691b7 https://www.encodeproject.org/files/ENCFF294NEM/@@download/ENCFF294NEM.bam released s3://encode-public/2020/04/20/e393b64d-f459-4b5e-ab5b-a47a8771489d/ENCFF294NEM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF413QVC fastq fastq reads ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 240494046 Michael Snyder, Stanford 7ac3115119279c138fc4015ece229d65 https://www.encodeproject.org/files/ENCFF413QVC/@@download/ENCFF413QVC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4f7e8523-daf1-4fe4-b15d-adbc4d21d54a/ENCFF413QVC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF771BHM fastq fastq reads ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 187851916 Michael Snyder, Stanford edf35c837eedfe64af32383b200997d8 https://www.encodeproject.org/files/ENCFF771BHM/@@download/ENCFF771BHM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/08623250-963b-4096-8059-c6140baa9b19/ENCFF771BHM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF730OVO bam bam alignments ce10 ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF771BHM/, /files/ENCFF413QVC/, /files/ENCFF987UMF/ 558639301 Kevin White, UChicago 6e3e8a501441035839e5d02aaab8bb49 https://www.encodeproject.org/files/ENCFF730OVO/@@download/ENCFF730OVO.bam released s3://encode-public/2016/10/18/0210344a-d2da-4135-ae99-381858597c5e/ENCFF730OVO.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF109XYT bam bam alignments ce11 ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF771BHM/, /files/ENCFF413QVC/, /files/ENCFF586MOL/ 559283011 Kevin White, UChicago a388e42947afbde6ef85cf86685e20e0 https://www.encodeproject.org/files/ENCFF109XYT/@@download/ENCFF109XYT.bam released s3://encode-public/2016/10/19/c71b3185-c6e3-4425-9f04-fa6af33bcc43/ENCFF109XYT.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF806FVG bigWig bigWig signal of unique reads ce10 ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF730OVO/ 9997811 Kevin White, UChicago 318159ea0a90f3d5de9bd4653d4c9429 https://www.encodeproject.org/files/ENCFF806FVG/@@download/ENCFF806FVG.bigWig released s3://encode-public/2016/10/20/ea505e48-e836-48dd-a178-f8f7001a0463/ENCFF806FVG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF200DKE bigWig bigWig read-depth normalized signal ce10 ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF730OVO/ 10032573 Kevin White, UChicago 0936f3f2bb8649c4f58734c3e3cc3e71 https://www.encodeproject.org/files/ENCFF200DKE/@@download/ENCFF200DKE.bigWig released s3://encode-public/2016/10/20/aaadda67-749f-400c-9411-f6f4866dc72e/ENCFF200DKE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF459TPU bigWig bigWig read-depth normalized signal ce11 ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF109XYT/ 10031475 Kevin White, UChicago d60e3b3eadb88e8d6ae8daf365f78910 https://www.encodeproject.org/files/ENCFF459TPU/@@download/ENCFF459TPU.bigWig released s3://encode-public/2016/10/21/c8df77d6-3ccc-4b5a-9372-24198cc04357/ENCFF459TPU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF838FYX bigWig bigWig signal of unique reads ce11 ENCSR136QRF Control ChIP-seq /worm-donors/ENCDO771ZWY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175924/'], '@type': ['Target', 'Item'], 'name': 'zip-8-celegans', 'label': 'zip-8', '@id': '/targets/zip-8-celegans/', 'title': 'zip-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '85a918ce-e93a-4d7f-98c4-af8381b10226', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF109XYT/ 9995159 Kevin White, UChicago 319f69bbebc64cb6108fe6a1fe3c528d https://www.encodeproject.org/files/ENCFF838FYX/@@download/ENCFF838FYX.bigWig released s3://encode-public/2016/10/21/ebfedb0b-1baf-48b0-acbf-ff57ac2c907f/ENCFF838FYX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF787LKE fastq fastq reads ENCSR655SYB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 single-ended 909204199 Richard Myers, HAIB e189412cc3aa0a8cd82aab555b3e4e39 SRA:SRR5111912 https://www.encodeproject.org/files/ENCFF787LKE/@@download/ENCFF787LKE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/683a7f5c-e463-42f0-b019-aa755062cdcb/ENCFF787LKE.fastq.gz low read depth ENCFF193EXM bam bam unfiltered alignments mm10 ENCSR655SYB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF787LKE/ 1049517940 ENCODE Processing Pipeline f2d5560b7f897f2127950af444ddc50e https://www.encodeproject.org/files/ENCFF193EXM/@@download/ENCFF193EXM.bam released s3://encode-public/2016/05/20/99cbb74f-adc2-4953-95a3-9945dda7e1f8/ENCFF193EXM.bam ENCODE3 mm10 archived low read depth ENCFF493AJV bam bam alignments mm10 ENCSR655SYB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF787LKE/ 812764449 ENCODE Processing Pipeline 113f2377dc92e9d2d3e147eddcf02e9f https://www.encodeproject.org/files/ENCFF493AJV/@@download/ENCFF493AJV.bam released s3://encode-public/2016/05/20/00b8438b-0576-4d2d-9b93-c0ae51ed204c/ENCFF493AJV.bam ENCODE3 mm10 archived low read depth ENCFF521GKL bam bam unfiltered alignments mm10 ENCSR655SYB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF787LKE/ 1037081557 ENCODE Processing Pipeline 99b4c7c6a06bc89b76c2ae9389de2f1b https://www.encodeproject.org/files/ENCFF521GKL/@@download/ENCFF521GKL.bam released s3://encode-public/2020/10/08/4f3be416-dcb3-40cd-b6d7-b0ddc6d1cae2/ENCFF521GKL.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF438XFW bam bam alignments mm10 ENCSR655SYB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF787LKE/ 840661503 ENCODE Processing Pipeline ed69d70e9733f094fb3b70f0b01dcec4 https://www.encodeproject.org/files/ENCFF438XFW/@@download/ENCFF438XFW.bam released s3://encode-public/2020/10/08/e9532a17-a2b8-4b1b-8782-1021ae318616/ENCFF438XFW.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF354MJZ fastq fastq reads ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 5 5_1 32 single-ended 145442162 Michael Snyder, Stanford f448acbbb89066dc66b4d3ebe779a736 https://www.encodeproject.org/files/ENCFF354MJZ/@@download/ENCFF354MJZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/65bf840e-10ca-42f6-a6c9-4614e819cca5/ENCFF354MJZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF693BGO fastq fastq reads ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 32 single-ended 111480362 Michael Snyder, Stanford 95995a2174d0af9cf3d3c81f7c0a0098 https://www.encodeproject.org/files/ENCFF693BGO/@@download/ENCFF693BGO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/29fd9ee7-ad40-4bfb-991c-a28540952bff/ENCFF693BGO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF982VWH fastq fastq reads ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 195182984 Michael Snyder, Stanford 9fde1d07933ecbc1b429850f9a638f7d https://www.encodeproject.org/files/ENCFF982VWH/@@download/ENCFF982VWH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ec7bf43d-f9e7-46ae-b05c-33932e04c023/ENCFF982VWH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF444IKC fastq fastq reads ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 6 6_1 32 single-ended 132868493 Michael Snyder, Stanford ae384c02aeb91702f9a836cdad663551 https://www.encodeproject.org/files/ENCFF444IKC/@@download/ENCFF444IKC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/84d230d4-ad93-49ea-8995-b992dd3a6039/ENCFF444IKC.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF262JZQ fastq fastq reads ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 210289618 Michael Snyder, Stanford 2fc4e2e208feab35ea9760d00c7cc697 https://www.encodeproject.org/files/ENCFF262JZQ/@@download/ENCFF262JZQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bb0318f8-f08e-49b2-8a0c-b5848e733575/ENCFF262JZQ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF730IWK fastq fastq reads ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 4 4_1 32 single-ended 103586944 Michael Snyder, Stanford ccfc840031ada574525e544c9bfbbafa https://www.encodeproject.org/files/ENCFF730IWK/@@download/ENCFF730IWK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6321e619-2d0f-45b7-8ff3-577330ad3ea9/ENCFF730IWK.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF371BCN bam bam alignments ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 /files/ENCFF262JZQ/, /files/ENCFF987UMF/ 212783348 Kevin White, UChicago a47db54911833d3c24f1d4037886da99 https://www.encodeproject.org/files/ENCFF371BCN/@@download/ENCFF371BCN.bam released s3://encode-public/2016/10/24/06bc9a97-8a09-4825-bca4-e11e6df8d9ca/ENCFF371BCN.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF499JVM bam bam alignments ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 32 /files/ENCFF693BGO/, /files/ENCFF987UMF/ 118490579 Kevin White, UChicago ea89b89292630095983988a2f05dc742 https://www.encodeproject.org/files/ENCFF499JVM/@@download/ENCFF499JVM.bam released s3://encode-public/2016/10/24/821bc038-b735-4762-bd16-58eaf6caac36/ENCFF499JVM.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF166QBP bam bam alignments ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 5 5_1 32 /files/ENCFF354MJZ/, /files/ENCFF987UMF/ 156470421 Kevin White, UChicago 0e61b7d35b1243cc1e6e05cbdfb74eeb https://www.encodeproject.org/files/ENCFF166QBP/@@download/ENCFF166QBP.bam released s3://encode-public/2016/10/24/f67dbe3f-493d-4ebe-afd1-dd080c81f06f/ENCFF166QBP.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF782MHW bam bam alignments ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 /files/ENCFF982VWH/, /files/ENCFF987UMF/ 197889340 Kevin White, UChicago 7fa46b103b84e7c1467cac5978415373 https://www.encodeproject.org/files/ENCFF782MHW/@@download/ENCFF782MHW.bam released s3://encode-public/2016/10/24/17b8a4fb-32fa-4b62-ad19-c2c74489569b/ENCFF782MHW.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF153FEK bam bam alignments ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 4 4_1 32 /files/ENCFF730IWK/, /files/ENCFF987UMF/ 115316325 Kevin White, UChicago 0fcd09cbac372944e56572a934538301 https://www.encodeproject.org/files/ENCFF153FEK/@@download/ENCFF153FEK.bam released s3://encode-public/2016/10/24/cb58251f-b95d-49a6-80a2-2ead05e294c5/ENCFF153FEK.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF006MGB bam bam alignments ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 6 6_1 32 /files/ENCFF444IKC/, /files/ENCFF987UMF/ 146025257 Kevin White, UChicago ce8c849910bafcfe084d41147ee57da1 https://www.encodeproject.org/files/ENCFF006MGB/@@download/ENCFF006MGB.bam released s3://encode-public/2016/10/24/c5ff20e8-3bed-49f7-af38-f39ea582794a/ENCFF006MGB.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF211CUI bam bam alignments ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 /files/ENCFF982VWH/, /files/ENCFF586MOL/ 198031339 Kevin White, UChicago 83482b3077c3fd83ccc09cc203a4d0f6 https://www.encodeproject.org/files/ENCFF211CUI/@@download/ENCFF211CUI.bam released s3://encode-public/2016/10/24/c6b15479-6d4b-4619-8db4-8255640bc403/ENCFF211CUI.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF275ADS bam bam alignments ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 /files/ENCFF262JZQ/, /files/ENCFF586MOL/ 212936128 Kevin White, UChicago 63dcfbe9e3e0829fa7aa4ec0010cbd52 https://www.encodeproject.org/files/ENCFF275ADS/@@download/ENCFF275ADS.bam released s3://encode-public/2016/10/24/3efb832b-5343-4862-b74b-b71c0b92b07e/ENCFF275ADS.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF353QSN bam bam alignments ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 32 /files/ENCFF693BGO/, /files/ENCFF586MOL/ 118590435 Kevin White, UChicago f01aeeba1c42e1943f196cc27eef0e4b https://www.encodeproject.org/files/ENCFF353QSN/@@download/ENCFF353QSN.bam released s3://encode-public/2016/10/24/901a619f-447e-4a24-8328-46ebd12b2f2c/ENCFF353QSN.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF380KNU bam bam alignments ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 4 4_1 32 /files/ENCFF730IWK/, /files/ENCFF586MOL/ 115410613 Kevin White, UChicago a6a960c0f1286f4017074b5bccea38f4 https://www.encodeproject.org/files/ENCFF380KNU/@@download/ENCFF380KNU.bam released s3://encode-public/2016/10/24/3084d07a-7e71-4dbd-acc2-0c8e3b56c10e/ENCFF380KNU.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF296JZJ bam bam alignments ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 5 5_1 32 /files/ENCFF354MJZ/, /files/ENCFF586MOL/ 156583691 Kevin White, UChicago af43ad502f9d63f47b010ed42a67c902 https://www.encodeproject.org/files/ENCFF296JZJ/@@download/ENCFF296JZJ.bam released s3://encode-public/2016/10/24/ce5a5ce0-2a9f-4f95-ac79-fc6782f16c7f/ENCFF296JZJ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF858XHY bam bam alignments ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 6 6_1 32 /files/ENCFF444IKC/, /files/ENCFF586MOL/ 146127547 Kevin White, UChicago 99c511ffdd28e80eb7d2f966b265489a https://www.encodeproject.org/files/ENCFF858XHY/@@download/ENCFF858XHY.bam released s3://encode-public/2016/10/24/87d84ad3-6573-4f94-9dd4-f4e67f13fce7/ENCFF858XHY.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF179DZF bigWig bigWig read-depth normalized signal ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4, 5, 6 1_1, 2_1, 3_1, 4_1, 5_1, 6_1 /files/ENCFF782MHW/, /files/ENCFF371BCN/, /files/ENCFF499JVM/, /files/ENCFF153FEK/, /files/ENCFF166QBP/, /files/ENCFF006MGB/ 9965742 Kevin White, UChicago 9cf2c766613a8656fc3c80b8f7ab2e96 https://www.encodeproject.org/files/ENCFF179DZF/@@download/ENCFF179DZF.bigWig released s3://encode-public/2016/10/24/6f3b031d-9ebf-4b0c-ba5f-7aa870e19e73/ENCFF179DZF.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF929ABL bigWig bigWig signal of unique reads ce10 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4, 5, 6 1_1, 2_1, 3_1, 4_1, 5_1, 6_1 /files/ENCFF782MHW/, /files/ENCFF371BCN/, /files/ENCFF499JVM/, /files/ENCFF153FEK/, /files/ENCFF166QBP/, /files/ENCFF006MGB/ 10032031 Kevin White, UChicago 1469debf34f04bfe353af6763d78bb2c https://www.encodeproject.org/files/ENCFF929ABL/@@download/ENCFF929ABL.bigWig released s3://encode-public/2016/10/24/a2dfcd31-c906-4d6d-9ce9-519183509f1e/ENCFF929ABL.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF883VJU bigWig bigWig read-depth normalized signal ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3, 4, 5, 6 1_1, 2_1, 3_1, 4_1, 5_1, 6_1 /files/ENCFF211CUI/, /files/ENCFF275ADS/, /files/ENCFF353QSN/, /files/ENCFF380KNU/, /files/ENCFF296JZJ/, /files/ENCFF858XHY/ 9960586 Kevin White, UChicago 88e822d97891fc4cc0cebb5cf3b3bca9 https://www.encodeproject.org/files/ENCFF883VJU/@@download/ENCFF883VJU.bigWig released s3://encode-public/2016/10/24/73610ae6-2c08-45d6-a208-d7cc60c05551/ENCFF883VJU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF213QDD bigWig bigWig signal of unique reads ce11 ENCSR346GYL Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 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ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF662ZML/ 1113563496 ENCODE Processing Pipeline f35c5c3067174fd4616f485724e2e984 https://www.encodeproject.org/files/ENCFF970NCX/@@download/ENCFF970NCX.bam released s3://encode-public/2018/02/22/a13e7879-e204-486e-a861-5f274782be5c/ENCFF970NCX.bam ENCODE3 hg19 archived low read depth, missing genetic modification characterization, missing biosample characterization ENCFF662ZML fastq fastq reads ENCSR345EZN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription 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ENCFF106GMN bam bam alignments hg19 ENCSR345EZN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'adb8d336-00d7-4fd1-9293-13f93a065fcf', 'schema_version': '14', 'name': 'CREB1-human', '@id': '/targets/CREB1-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF662ZML/ 832962103 ENCODE Processing Pipeline 538315e277f33b15ef9d96d73ca658e8 https://www.encodeproject.org/files/ENCFF106GMN/@@download/ENCFF106GMN.bam released s3://encode-public/2016/05/07/1ddcf52a-a008-4f09-bee4-7290e1c0e18e/ENCFF106GMN.bam ENCODE3 hg19 archived low read depth, missing genetic modification characterization, missing biosample characterization ENCFF667OGR bam bam unfiltered alignments GRCh38 ENCSR345EZN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'adb8d336-00d7-4fd1-9293-13f93a065fcf', 'schema_version': '14', 'name': 'CREB1-human', '@id': '/targets/CREB1-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF662ZML/ 1118121860 ENCODE Processing Pipeline 23a1fc14009312951416ed0e28841a3e https://www.encodeproject.org/files/ENCFF667OGR/@@download/ENCFF667OGR.bam released s3://encode-public/2020/06/25/8ac58c03-4d9b-4e75-af65-d6c16957ebd3/ENCFF667OGR.bam ENCODE4 GRCh38 released low read depth, missing genetic modification characterization, missing biosample characterization ENCFF357MFI bam bam alignments GRCh38 ENCSR345EZN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'adb8d336-00d7-4fd1-9293-13f93a065fcf', 'schema_version': '14', 'name': 'CREB1-human', '@id': '/targets/CREB1-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF662ZML/ 873725982 ENCODE Processing Pipeline 2239ead5381e9a7ae0f4a857ac3cad2b https://www.encodeproject.org/files/ENCFF357MFI/@@download/ENCFF357MFI.bam released s3://encode-public/2020/06/25/07ef8ed6-6fa5-4c9c-977e-5cf5406e3742/ENCFF357MFI.bam ENCODE4 GRCh38 released low read depth, missing genetic modification characterization, missing biosample characterization ENCFF396BFW bam bam unfiltered alignments hg19 ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF527UFN/, /files/ENCFF563YDI/ 7205925195 ENCODE Processing Pipeline 69ffa49bfe6ebd34cd9516d02000b9b8 https://www.encodeproject.org/files/ENCFF396BFW/@@download/ENCFF396BFW.bam released s3://encode-public/2018/02/21/c7afb68b-b67e-4d85-8a3b-b000be477c2c/ENCFF396BFW.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF527UFN fastq fastq reads ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': 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characterization ENCFF563YDI fastq fastq reads ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF527UFN/ 3218891415 Michael Snyder, Stanford 0a8785cdcd03a0efeaa69002cf5aeb62 SRA:SRR5112270 https://www.encodeproject.org/files/ENCFF563YDI/@@download/ENCFF563YDI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/054e4b22-d21f-4e19-bd0c-3dcfdacaf22d/ENCFF563YDI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF061ITH bam bam alignments hg19 ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF527UFN/, /files/ENCFF563YDI/ 5728776760 ENCODE Processing Pipeline dbfc5de72c27cb49a6be48284afff948 https://www.encodeproject.org/files/ENCFF061ITH/@@download/ENCFF061ITH.bam released s3://encode-public/2015/12/09/d6b9253f-ab7c-486b-8fb9-873104e925af/ENCFF061ITH.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF180NRS bam bam unfiltered alignments GRCh38 ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF527UFN/, /files/ENCFF563YDI/, /files/ENCFF643CGH/ 7217694806 ENCODE Processing Pipeline 7881d66b1643f745ca3898d4fe5e613e https://www.encodeproject.org/files/ENCFF180NRS/@@download/ENCFF180NRS.bam released s3://encode-public/2016/05/06/4389e828-d95a-4146-b08c-6003a9913cbd/ENCFF180NRS.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF172LMI bam bam alignments GRCh38 ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF527UFN/, /files/ENCFF563YDI/, /files/ENCFF643CGH/ 5734800064 ENCODE Processing Pipeline 0d398ebe8d59c371190152ce9a12b3d1 https://www.encodeproject.org/files/ENCFF172LMI/@@download/ENCFF172LMI.bam released s3://encode-public/2016/05/06/b9d6b5aa-299e-416d-87da-bffd7b6554f7/ENCFF172LMI.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF432KKB bam bam unfiltered alignments GRCh38 ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF527UFN/, /files/ENCFF563YDI/, /files/ENCFF110MCL/ 7231444367 ENCODE Processing Pipeline 5945bdf66dac4f3d7541714083012d32 https://www.encodeproject.org/files/ENCFF432KKB/@@download/ENCFF432KKB.bam released s3://encode-public/2020/06/13/cc22dd9f-97f8-4c20-8311-6ccd4402c042/ENCFF432KKB.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF591POS bam bam alignments GRCh38 ENCSR922MYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF527UFN/, /files/ENCFF563YDI/, /files/ENCFF110MCL/ 5701093937 ENCODE Processing Pipeline b500b6bf5615cb00eb9fd0a1087639f2 https://www.encodeproject.org/files/ENCFF591POS/@@download/ENCFF591POS.bam released s3://encode-public/2020/06/13/ec26a347-6e15-42ea-9c37-b2d4483131e4/ENCFF591POS.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF526MQZ fastq fastq reads ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 120697838 Michael Snyder, Stanford 3df507d65aa62646127818e099935344 https://www.encodeproject.org/files/ENCFF526MQZ/@@download/ENCFF526MQZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8f85c004-a270-4b89-9399-f2f4909ad5f6/ENCFF526MQZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF163WXD fastq fastq reads ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 86196894 Michael Snyder, Stanford 59574d53b393eb13ccb53a69eb29e29c https://www.encodeproject.org/files/ENCFF163WXD/@@download/ENCFF163WXD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/028ca363-0f3b-48ad-ab5c-2546ecdc663a/ENCFF163WXD.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF277SQT bam bam alignments ce10 ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF526MQZ/, /files/ENCFF163WXD/, /files/ENCFF987UMF/ 242082404 Kevin White, UChicago 94eda8f32e928ad280793e82905310ad https://www.encodeproject.org/files/ENCFF277SQT/@@download/ENCFF277SQT.bam released s3://encode-public/2016/10/24/4bc1e051-a1ca-44d8-87d6-15b99fb33837/ENCFF277SQT.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF821CKB bigWig bigWig signal of unique reads ce10 ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF277SQT/ 10062746 Kevin White, UChicago c59c47c1bbce4d52cc10c5c37f75e424 https://www.encodeproject.org/files/ENCFF821CKB/@@download/ENCFF821CKB.bigWig released s3://encode-public/2016/10/24/7b6ee4c8-0f76-48d0-beea-23fd4c10dadb/ENCFF821CKB.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF079MYG bigWig bigWig read-depth normalized signal ce10 ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF277SQT/ 10024187 Kevin White, UChicago c49ca864a507cc3bd8596d465a65b22b https://www.encodeproject.org/files/ENCFF079MYG/@@download/ENCFF079MYG.bigWig released s3://encode-public/2016/10/24/44c489b6-14f5-418c-9704-432c561ce4e1/ENCFF079MYG.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF537BXU bigWig bigWig signal of unique reads ce11 ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF617FNE/ 10062320 Kevin White, UChicago a93881116fc0f6d818d0150e95a1f5ff https://www.encodeproject.org/files/ENCFF537BXU/@@download/ENCFF537BXU.bigWig released s3://encode-public/2016/10/24/381dbe0f-853d-492e-972c-262a50e26850/ENCFF537BXU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF762FVA bigWig bigWig read-depth normalized signal ce11 ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF617FNE/ 10024300 Kevin White, UChicago f402ce65541e907d8d3a05b0f8d850b4 https://www.encodeproject.org/files/ENCFF762FVA/@@download/ENCFF762FVA.bigWig released s3://encode-public/2016/10/24/3b74c53f-1465-4ad2-adf8-7960824def3c/ENCFF762FVA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF617FNE bam bam alignments ce11 ENCSR483GHB Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF526MQZ/, /files/ENCFF163WXD/, /files/ENCFF586MOL/ 242346369 Kevin White, UChicago 5853e13e6570923385e151c9f143ef5d https://www.encodeproject.org/files/ENCFF617FNE/@@download/ENCFF617FNE.bam released s3://encode-public/2017/11/17/013a8b9f-6736-4edd-88e3-2cd9a607eb85/ENCFF617FNE.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF670XFL fastq fastq reads ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 196414549 Michael Snyder, Stanford 4517b19f5d7ed0cad4e23a7a90dcb4fc https://www.encodeproject.org/files/ENCFF670XFL/@@download/ENCFF670XFL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/47444edf-0a60-4e56-8ebf-97f60337d307/ENCFF670XFL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF743BJY fastq fastq reads ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 133396908 Michael Snyder, Stanford 158d297e3b3df9df2ccf863ce1d2d6c8 https://www.encodeproject.org/files/ENCFF743BJY/@@download/ENCFF743BJY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/881fe3d7-91df-4f28-b3df-24ce57f841ff/ENCFF743BJY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF739FDV bam bam alignments ce10 ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF743BJY/, /files/ENCFF670XFL/, /files/ENCFF987UMF/ 386416533 Kevin White, UChicago f12578f6303e5a69833ac07444b45a4d https://www.encodeproject.org/files/ENCFF739FDV/@@download/ENCFF739FDV.bam released s3://encode-public/2016/10/18/83ec476e-3100-4eaa-ab58-05a9add275a3/ENCFF739FDV.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF147BSC bam bam alignments ce11 ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF743BJY/, /files/ENCFF670XFL/, /files/ENCFF586MOL/ 386792679 Kevin White, UChicago a67f5bcc48bbd3ee400dd71989cde762 https://www.encodeproject.org/files/ENCFF147BSC/@@download/ENCFF147BSC.bam released s3://encode-public/2016/10/19/e5cf73fc-0227-4ca9-9ac7-357e2aca0673/ENCFF147BSC.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF182OKM bigWig bigWig read-depth normalized signal ce10 ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF739FDV/ 10056376 Kevin White, UChicago e3b5e60c00c9616f6651dc426aef50c2 https://www.encodeproject.org/files/ENCFF182OKM/@@download/ENCFF182OKM.bigWig released s3://encode-public/2016/10/20/1dec6c04-7f7d-4a0f-a7de-0797b9d65a54/ENCFF182OKM.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF616VSV bigWig bigWig signal of unique reads ce10 ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF739FDV/ 10039643 Kevin White, UChicago 79ca75077e7251e36594c33742e67c44 https://www.encodeproject.org/files/ENCFF616VSV/@@download/ENCFF616VSV.bigWig released s3://encode-public/2016/10/20/5e0c89a5-0886-4ea0-961a-11740ddd6323/ENCFF616VSV.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF673WXD bigWig bigWig read-depth normalized signal ce11 ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF147BSC/ 10054469 Kevin White, UChicago ca46126554b2ee8032208c269e37386a https://www.encodeproject.org/files/ENCFF673WXD/@@download/ENCFF673WXD.bigWig released s3://encode-public/2016/10/20/760a9e3e-c2e4-4381-821a-45b9ea77dbde/ENCFF673WXD.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF053XHF bigWig bigWig signal of unique reads ce11 ENCSR675OOS Control ChIP-seq /worm-donors/ENCDO844IEZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF147BSC/ 10035246 Kevin White, UChicago b6e6db2425974a7a4a94b28e1894be88 https://www.encodeproject.org/files/ENCFF053XHF/@@download/ENCFF053XHF.bigWig released s3://encode-public/2016/10/20/1d91d7fe-6f5d-4e71-86e6-5e0f01d67bc7/ENCFF053XHF.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF215BLM fastq fastq reads ENCSR852VMM Control ChIP-seq /fly-donors/ENCDO778LFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40858/'], '@type': ['Target', 'Item'], 'name': 'gfzf-dmelanogaster', 'label': 'gfzf', '@id': '/targets/gfzf-dmelanogaster/', 'title': 'gfzf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1df19495-96ef-4cff-a6ff-ebb700867a20', 'status': 'released'} dm3 3R 2957902 2982424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 672289001 Kevin White, UChicago 730f40108b3c20b4ab0c3c41bf64bf8e https://www.encodeproject.org/files/ENCFF215BLM/@@download/ENCFF215BLM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/8694b827-ebd3-4499-984e-2dad9395e382/ENCFF215BLM.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF958EHX bam bam alignments dm3 ENCSR852VMM Control ChIP-seq /fly-donors/ENCDO778LFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40858/'], '@type': ['Target', 'Item'], 'name': 'gfzf-dmelanogaster', 'label': 'gfzf', '@id': '/targets/gfzf-dmelanogaster/', 'title': 'gfzf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1df19495-96ef-4cff-a6ff-ebb700867a20', 'status': 'released'} dm3 3R 2957902 2982424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF215BLM/ 985581860 Kevin White, UChicago 653643c85b640fd93f8d5aa63c2305c3 https://www.encodeproject.org/files/ENCFF958EHX/@@download/ENCFF958EHX.bam released s3://encode-public/2015/08/03/37f983a2-2500-425b-8b42-0c8d5f960c5d/ENCFF958EHX.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF628EFH bigWig bigWig signal of unique reads dm3 ENCSR852VMM Control ChIP-seq /fly-donors/ENCDO778LFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40858/'], '@type': ['Target', 'Item'], 'name': 'gfzf-dmelanogaster', 'label': 'gfzf', '@id': '/targets/gfzf-dmelanogaster/', 'title': 'gfzf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1df19495-96ef-4cff-a6ff-ebb700867a20', 'status': 'released'} dm3 3R 2957902 2982424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF958EHX/ 15417620 Kevin White, UChicago ddf5f139dd5579fe19703b56ae801b76 https://www.encodeproject.org/files/ENCFF628EFH/@@download/ENCFF628EFH.bigWig released s3://encode-public/2015/10/05/d7832786-8370-4fa2-a4da-e90cca7176e0/ENCFF628EFH.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF583HTM bigWig bigWig read-depth normalized signal dm3 ENCSR852VMM Control ChIP-seq /fly-donors/ENCDO778LFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40858/'], '@type': ['Target', 'Item'], 'name': 'gfzf-dmelanogaster', 'label': 'gfzf', '@id': '/targets/gfzf-dmelanogaster/', 'title': 'gfzf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1df19495-96ef-4cff-a6ff-ebb700867a20', 'status': 'released'} dm3 3R 2957902 2982424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF958EHX/ 15426778 Kevin White, UChicago a4dd251eb4bf775a6a2b35756b754061 https://www.encodeproject.org/files/ENCFF583HTM/@@download/ENCFF583HTM.bigWig released s3://encode-public/2015/10/05/f4df8f17-8d10-4b2e-af0b-4757b9179823/ENCFF583HTM.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF439MJC bam bam alignments dm6 ENCSR852VMM Control ChIP-seq /fly-donors/ENCDO778LFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40858/'], '@type': ['Target', 'Item'], 'name': 'gfzf-dmelanogaster', 'label': 'gfzf', '@id': '/targets/gfzf-dmelanogaster/', 'title': 'gfzf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1df19495-96ef-4cff-a6ff-ebb700867a20', 'status': 'released'} dm3 3R 2957902 2982424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF215BLM/ 982279290 Kevin White, UChicago d6cdd753b8d0e6c8c3f9b5b0769d7589 https://www.encodeproject.org/files/ENCFF439MJC/@@download/ENCFF439MJC.bam released s3://encode-public/2016/04/21/cb4b447f-bc47-481d-a6c3-cfa9dd193bbc/ENCFF439MJC.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF572GLU bigWig bigWig read-depth normalized signal dm6 ENCSR852VMM Control ChIP-seq /fly-donors/ENCDO778LFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40858/'], '@type': ['Target', 'Item'], 'name': 'gfzf-dmelanogaster', 'label': 'gfzf', '@id': '/targets/gfzf-dmelanogaster/', 'title': 'gfzf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1df19495-96ef-4cff-a6ff-ebb700867a20', 'status': 'released'} dm3 3R 2957902 2982424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF439MJC/ 17520291 Kevin White, UChicago 10dacd417a24b377e14b3678f06b6ff5 https://www.encodeproject.org/files/ENCFF572GLU/@@download/ENCFF572GLU.bigWig released s3://encode-public/2016/06/21/c2f6b340-9389-4beb-858b-4757e5154326/ENCFF572GLU.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF340CGX bigWig bigWig signal of unique reads dm6 ENCSR852VMM Control ChIP-seq /fly-donors/ENCDO778LFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40858/'], '@type': ['Target', 'Item'], 'name': 'gfzf-dmelanogaster', 'label': 'gfzf', '@id': '/targets/gfzf-dmelanogaster/', 'title': 'gfzf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1df19495-96ef-4cff-a6ff-ebb700867a20', 'status': 'released'} dm3 3R 2957902 2982424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF439MJC/ 17496676 Kevin White, UChicago 897a5cc60adabd40e5908c49574aecfb https://www.encodeproject.org/files/ENCFF340CGX/@@download/ENCFF340CGX.bigWig released s3://encode-public/2016/06/21/c05b6f9d-74d4-4c8e-94a6-fe7547ae4a60/ENCFF340CGX.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF691TXM fastq fastq reads ENCSR242RQJ Control ChIP-seq /fly-donors/ENCDO872WBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40345/'], '@type': ['Target', 'Item'], 'name': 'Eip78C-dmelanogaster', 'label': 'Eip78C', '@id': '/targets/Eip78C-dmelanogaster/', 'title': 'Eip78C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4f1f7d11-606d-45ac-895d-a9bb81649bd0', 'status': 'released'} dm3 3L 21202168 21287682 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1814950951 Kevin White, UChicago 2b404ca93e29651dcf2580d9ba4c033b https://www.encodeproject.org/files/ENCFF691TXM/@@download/ENCFF691TXM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/8c976989-0f2c-442d-acba-b8f4a024ba80/ENCFF691TXM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF229YUF bam bam alignments dm3 ENCSR242RQJ Control ChIP-seq /fly-donors/ENCDO872WBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40345/'], '@type': ['Target', 'Item'], 'name': 'Eip78C-dmelanogaster', 'label': 'Eip78C', '@id': '/targets/Eip78C-dmelanogaster/', 'title': 'Eip78C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4f1f7d11-606d-45ac-895d-a9bb81649bd0', 'status': 'released'} dm3 3L 21202168 21287682 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF691TXM/ 2583591976 Kevin White, UChicago b045191782fe763f48d0bced01918180 https://www.encodeproject.org/files/ENCFF229YUF/@@download/ENCFF229YUF.bam released s3://encode-public/2015/08/03/2bf49af3-1cfe-4723-888f-348b4e83ae54/ENCFF229YUF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF953GRF bigWig bigWig read-depth normalized signal dm3 ENCSR242RQJ Control ChIP-seq /fly-donors/ENCDO872WBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40345/'], '@type': ['Target', 'Item'], 'name': 'Eip78C-dmelanogaster', 'label': 'Eip78C', '@id': '/targets/Eip78C-dmelanogaster/', 'title': 'Eip78C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4f1f7d11-606d-45ac-895d-a9bb81649bd0', 'status': 'released'} dm3 3L 21202168 21287682 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF229YUF/ 15544019 Kevin White, UChicago 9c161782c7f4f9ca1d1056577fd645b8 https://www.encodeproject.org/files/ENCFF953GRF/@@download/ENCFF953GRF.bigWig released s3://encode-public/2015/10/05/6fe13d87-5f74-44fc-b57a-d9dd969ab4a8/ENCFF953GRF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF333UWD bigWig bigWig signal of unique reads dm3 ENCSR242RQJ Control ChIP-seq /fly-donors/ENCDO872WBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40345/'], '@type': ['Target', 'Item'], 'name': 'Eip78C-dmelanogaster', 'label': 'Eip78C', '@id': '/targets/Eip78C-dmelanogaster/', 'title': 'Eip78C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4f1f7d11-606d-45ac-895d-a9bb81649bd0', 'status': 'released'} dm3 3L 21202168 21287682 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF229YUF/ 15527326 Kevin White, UChicago 13aff98827d315f335bc0beb5e3cb21d https://www.encodeproject.org/files/ENCFF333UWD/@@download/ENCFF333UWD.bigWig released s3://encode-public/2015/10/05/a23fb59e-6f2d-438b-b24a-084fa2ad0bf3/ENCFF333UWD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF134EWH bam bam alignments dm6 ENCSR242RQJ Control ChIP-seq /fly-donors/ENCDO872WBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40345/'], '@type': ['Target', 'Item'], 'name': 'Eip78C-dmelanogaster', 'label': 'Eip78C', '@id': '/targets/Eip78C-dmelanogaster/', 'title': 'Eip78C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4f1f7d11-606d-45ac-895d-a9bb81649bd0', 'status': 'released'} dm3 3L 21202168 21287682 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF691TXM/ 2577086681 Kevin White, UChicago 39c694518b94ec1ad20c452c22992cc6 https://www.encodeproject.org/files/ENCFF134EWH/@@download/ENCFF134EWH.bam released s3://encode-public/2016/04/21/f5c49942-55dc-4d5e-90b3-9347908dbff0/ENCFF134EWH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF302DXP bigWig bigWig signal of unique reads dm6 ENCSR242RQJ Control ChIP-seq /fly-donors/ENCDO872WBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40345/'], '@type': ['Target', 'Item'], 'name': 'Eip78C-dmelanogaster', 'label': 'Eip78C', '@id': '/targets/Eip78C-dmelanogaster/', 'title': 'Eip78C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4f1f7d11-606d-45ac-895d-a9bb81649bd0', 'status': 'released'} dm3 3L 21202168 21287682 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF134EWH/ 17634172 Kevin White, UChicago df48fe69ee1fdfd874a2967cc18616f8 https://www.encodeproject.org/files/ENCFF302DXP/@@download/ENCFF302DXP.bigWig released s3://encode-public/2016/06/20/d029a92e-117d-4b8a-a13a-de060cf051f2/ENCFF302DXP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF543APZ bigWig bigWig read-depth normalized signal dm6 ENCSR242RQJ Control ChIP-seq /fly-donors/ENCDO872WBW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40345/'], '@type': ['Target', 'Item'], 'name': 'Eip78C-dmelanogaster', 'label': 'Eip78C', '@id': '/targets/Eip78C-dmelanogaster/', 'title': 'Eip78C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4f1f7d11-606d-45ac-895d-a9bb81649bd0', 'status': 'released'} dm3 3L 21202168 21287682 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF134EWH/ 17634717 Kevin White, UChicago 6fb5450bdefbf19d2d8fcf85892df2f5 https://www.encodeproject.org/files/ENCFF543APZ/@@download/ENCFF543APZ.bigWig released s3://encode-public/2016/06/20/c6d921b1-4be6-4e11-8556-6e0736fc691f/ENCFF543APZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF767ZPI bam bam unfiltered alignments hg19 ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF679OFG/, /files/ENCFF485ZYJ/ 2272638908 ENCODE Processing Pipeline 877c6f49d5583dac7a7b249aa143dbb7 https://www.encodeproject.org/files/ENCFF767ZPI/@@download/ENCFF767ZPI.bam released s3://encode-public/2018/02/21/362f398f-fadf-4f3c-a4c3-464007feb717/ENCFF767ZPI.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF485ZYJ fastq fastq reads ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 758271131 Kevin White, UChicago 0536f2cbc2c31e94591ce2881d1f31b3 SRA:SRR6214005 https://www.encodeproject.org/files/ENCFF485ZYJ/@@download/ENCFF485ZYJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF726JBF/, /files/ENCFF348XCG/ released s3://encode-public/2016/03/14/1fb8cc86-d4cd-4e7c-adec-69a040b4add8/ENCFF485ZYJ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF679OFG fastq fastq reads ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1339843765 Kevin White, UChicago 674d9ed55dee6c9bed8d78b3c2d24a49 SRA:SRR6214006 https://www.encodeproject.org/files/ENCFF679OFG/@@download/ENCFF679OFG.fastq.gz Illumina HiSeq 2500 /files/ENCFF726JBF/, /files/ENCFF348XCG/ released s3://encode-public/2016/03/26/cffd47cf-ca5e-4a95-9b2d-d4a03e69cc05/ENCFF679OFG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF139MVO bam bam alignments hg19 ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF679OFG/, /files/ENCFF485ZYJ/ 1806621299 ENCODE Processing Pipeline 40673ad4f11bd6087544f94b93033af4 https://www.encodeproject.org/files/ENCFF139MVO/@@download/ENCFF139MVO.bam released s3://encode-public/2016/04/23/7135a308-5fc2-4748-a6ba-7fef304029a5/ENCFF139MVO.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF436BHQ bam bam unfiltered alignments GRCh38 ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF679OFG/, /files/ENCFF485ZYJ/ 2281348481 ENCODE Processing Pipeline 52fb7870e890678283b5f35950cb47f6 https://www.encodeproject.org/files/ENCFF436BHQ/@@download/ENCFF436BHQ.bam released s3://encode-public/2016/05/06/ef138e05-5df2-4392-83d6-19c94660e5b2/ENCFF436BHQ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF679QYP bam bam alignments GRCh38 ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF679OFG/, /files/ENCFF485ZYJ/ 1806037998 ENCODE Processing Pipeline d3dd2aaef5cd5aaa0f43a3ae28735402 https://www.encodeproject.org/files/ENCFF679QYP/@@download/ENCFF679QYP.bam released s3://encode-public/2016/05/06/a3ca1ae2-471d-4ad0-a84c-ff6d3e37e65d/ENCFF679QYP.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF791MJU bam bam alignments GRCh38 ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF485ZYJ/, /files/ENCFF110MCL/, /files/ENCFF679OFG/ 1909156369 ENCODE Processing Pipeline 13592bce56b704787273da3772829086 https://www.encodeproject.org/files/ENCFF791MJU/@@download/ENCFF791MJU.bam released s3://encode-public/2020/10/27/94a23eca-6c36-407a-8b89-c2081d21d36d/ENCFF791MJU.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF543IWW bam bam unfiltered alignments GRCh38 ENCSR822DUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF485ZYJ/, /files/ENCFF110MCL/, /files/ENCFF679OFG/ 2279662421 ENCODE Processing Pipeline 4223d4cda94ec6021c99f03ea8e23f7c https://www.encodeproject.org/files/ENCFF543IWW/@@download/ENCFF543IWW.bam released s3://encode-public/2020/10/27/1af92c7e-7131-4758-943a-499e6d0be359/ENCFF543IWW.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF179CKA fastq fastq reads ENCSR981IYC Control ChIP-seq /fly-donors/ENCDO702VTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35942/'], '@type': ['Target', 'Item'], 'name': 'unpg-dmelanogaster', 'label': 'unpg', '@id': '/targets/unpg-dmelanogaster/', 'title': 'unpg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e758fbc-2edd-4b65-83cb-e932ffd12a61', 'status': 'released'} dm3 2R 5076144 5097293 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2434763767 Kevin White, UChicago 22a81fbc4faa9160d5fcddbf8b327bb4 https://www.encodeproject.org/files/ENCFF179CKA/@@download/ENCFF179CKA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/18/2c59e8f8-26ef-4b8c-a34b-eea31cb60589/ENCFF179CKA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF060CZG fastq fastq reads ENCSR981IYC Control ChIP-seq /fly-donors/ENCDO702VTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35942/'], '@type': ['Target', 'Item'], 'name': 'unpg-dmelanogaster', 'label': 'unpg', '@id': '/targets/unpg-dmelanogaster/', 'title': 'unpg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e758fbc-2edd-4b65-83cb-e932ffd12a61', 'status': 'released'} dm3 2R 5076144 5097293 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 312622072 Kevin White, UChicago 6e103a92b8bd8e935e635e8450230530 https://www.encodeproject.org/files/ENCFF060CZG/@@download/ENCFF060CZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/18/80991f21-6be0-43f0-9e02-33b6c58a31db/ENCFF060CZG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF586TDW bam bam alignments dm6 ENCSR981IYC Control ChIP-seq /fly-donors/ENCDO702VTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35942/'], '@type': ['Target', 'Item'], 'name': 'unpg-dmelanogaster', 'label': 'unpg', '@id': '/targets/unpg-dmelanogaster/', 'title': 'unpg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e758fbc-2edd-4b65-83cb-e932ffd12a61', 'status': 'released'} dm3 2R 5076144 5097293 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF179CKA/, /files/ENCFF060CZG/, /files/ENCFF479RCH/ 3687750916 Kevin White, UChicago 570a0929e5f9347bbc31760e640c9889 https://www.encodeproject.org/files/ENCFF586TDW/@@download/ENCFF586TDW.bam released s3://encode-public/2018/09/19/0068ad5b-5814-44e6-a48d-9779879013a9/ENCFF586TDW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF256WBR bigWig bigWig signal of unique reads dm6 ENCSR981IYC Control ChIP-seq /fly-donors/ENCDO702VTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35942/'], '@type': ['Target', 'Item'], 'name': 'unpg-dmelanogaster', 'label': 'unpg', '@id': '/targets/unpg-dmelanogaster/', 'title': 'unpg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e758fbc-2edd-4b65-83cb-e932ffd12a61', 'status': 'released'} dm3 2R 5076144 5097293 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF586TDW/ 17907511 Kevin White, UChicago c17f69cd07f74c07ab9d20ebc8a32642 https://www.encodeproject.org/files/ENCFF256WBR/@@download/ENCFF256WBR.bigWig released s3://encode-public/2018/09/19/91ed84ba-2fad-4c39-aa01-f34995cf9546/ENCFF256WBR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF133QIY bigWig bigWig read-depth normalized signal dm6 ENCSR981IYC Control ChIP-seq /fly-donors/ENCDO702VTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35942/'], '@type': ['Target', 'Item'], 'name': 'unpg-dmelanogaster', 'label': 'unpg', '@id': '/targets/unpg-dmelanogaster/', 'title': 'unpg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e758fbc-2edd-4b65-83cb-e932ffd12a61', 'status': 'released'} dm3 2R 5076144 5097293 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF586TDW/ 17904146 Kevin White, UChicago aa34d568dc99f74c6911895731a6fc6f https://www.encodeproject.org/files/ENCFF133QIY/@@download/ENCFF133QIY.bigWig released s3://encode-public/2018/09/19/bd207065-7b1e-4de6-abd1-d73d17e257d9/ENCFF133QIY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF847EPN fastq fastq reads ENCSR851USP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF008RSK/ 2323724189 Michael Snyder, Stanford c16463175ce95ef2d5d0160f6e641da8 https://www.encodeproject.org/files/ENCFF847EPN/@@download/ENCFF847EPN.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/c53a1051-988d-43b2-86e3-07655af7672e/ENCFF847EPN.fastq.gz mild to moderate bottlenecking ENCFF008RSK fastq fastq reads ENCSR851USP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF847EPN/ 2330712279 Michael Snyder, Stanford 0083e0d642ad3ff70e0ce651da5daad6 https://www.encodeproject.org/files/ENCFF008RSK/@@download/ENCFF008RSK.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/07/12/d1f677b2-2a41-4cab-b493-094f906e6813/ENCFF008RSK.fastq.gz mild to moderate bottlenecking ENCFF781XZO bam bam alignments GRCh38 ENCSR851USP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF847EPN/, /files/ENCFF008RSK/, /files/ENCFF110MCL/ 3648277842 ENCODE Processing Pipeline f46210dfeee8364c6d1b9027bc232bcf https://www.encodeproject.org/files/ENCFF781XZO/@@download/ENCFF781XZO.bam released s3://encode-public/2021/08/30/c70ea2a5-5a5f-49f7-aafa-bff39a9a45ab/ENCFF781XZO.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF068DMO bam bam unfiltered alignments GRCh38 ENCSR851USP Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-09-01 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF847EPN/, /files/ENCFF008RSK/, /files/ENCFF110MCL/ 4549578638 ENCODE Processing Pipeline 7eb32a04e3e67d41e55133c6cc3b021d https://www.encodeproject.org/files/ENCFF068DMO/@@download/ENCFF068DMO.bam released s3://encode-public/2021/08/30/d9af0ac4-02da-4c26-81fb-382a639046ab/ENCFF068DMO.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking ENCFF645KID fastq fastq reads ENCSR197FZB Control ChIP-seq /fly-donors/ENCDO759QTO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/318860/'], '@type': ['Target', 'Item'], 'name': 'CG31627-dmelanogaster', 'label': 'CG31627', '@id': '/targets/CG31627-dmelanogaster/', 'title': 'CG31627 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'bc137385-e36a-4f1d-8297-201a9b1a4105', 'status': 'released'} dm3 2L 21167444 21186424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 650580771 Kevin White, UChicago c9d09e9d910dbbc5173cbc62f2432000 https://www.encodeproject.org/files/ENCFF645KID/@@download/ENCFF645KID.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/dc0c2a2a-290b-411b-bf68-a8b09e11c0c8/ENCFF645KID.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF222PMK bam bam alignments dm3 ENCSR197FZB Control ChIP-seq /fly-donors/ENCDO759QTO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/318860/'], '@type': ['Target', 'Item'], 'name': 'CG31627-dmelanogaster', 'label': 'CG31627', '@id': '/targets/CG31627-dmelanogaster/', 'title': 'CG31627 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'bc137385-e36a-4f1d-8297-201a9b1a4105', 'status': 'released'} dm3 2L 21167444 21186424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF645KID/ 938666579 Kevin White, UChicago 6512a6414644784689c6a7af96b06a11 https://www.encodeproject.org/files/ENCFF222PMK/@@download/ENCFF222PMK.bam released s3://encode-public/2015/08/03/903e11e8-5663-4a55-82ab-bd0a4119d626/ENCFF222PMK.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF469JVU bigWig bigWig signal of unique reads dm3 ENCSR197FZB Control ChIP-seq /fly-donors/ENCDO759QTO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/318860/'], '@type': ['Target', 'Item'], 'name': 'CG31627-dmelanogaster', 'label': 'CG31627', '@id': '/targets/CG31627-dmelanogaster/', 'title': 'CG31627 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'bc137385-e36a-4f1d-8297-201a9b1a4105', 'status': 'released'} dm3 2L 21167444 21186424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF222PMK/ 15242415 Kevin White, UChicago d8cb92147c03c47406005507bf2ef3f3 https://www.encodeproject.org/files/ENCFF469JVU/@@download/ENCFF469JVU.bigWig released s3://encode-public/2015/10/05/df069e30-d014-42d0-96f8-59ebea30f23b/ENCFF469JVU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF958MBE bigWig bigWig read-depth normalized signal dm3 ENCSR197FZB Control ChIP-seq /fly-donors/ENCDO759QTO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/318860/'], '@type': ['Target', 'Item'], 'name': 'CG31627-dmelanogaster', 'label': 'CG31627', '@id': '/targets/CG31627-dmelanogaster/', 'title': 'CG31627 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'bc137385-e36a-4f1d-8297-201a9b1a4105', 'status': 'released'} dm3 2L 21167444 21186424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF222PMK/ 15250691 Kevin White, UChicago fef16293460ba7e3dc580283462fb6c1 https://www.encodeproject.org/files/ENCFF958MBE/@@download/ENCFF958MBE.bigWig released s3://encode-public/2015/10/05/8a5127e1-2084-431f-a76e-c57a3887bc36/ENCFF958MBE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF009TNH bam bam alignments dm6 ENCSR197FZB Control ChIP-seq /fly-donors/ENCDO759QTO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/318860/'], '@type': ['Target', 'Item'], 'name': 'CG31627-dmelanogaster', 'label': 'CG31627', '@id': '/targets/CG31627-dmelanogaster/', 'title': 'CG31627 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'bc137385-e36a-4f1d-8297-201a9b1a4105', 'status': 'released'} dm3 2L 21167444 21186424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF645KID/ 936412899 Kevin White, UChicago d64dfcf0c46fd5145878cfe4ba995888 https://www.encodeproject.org/files/ENCFF009TNH/@@download/ENCFF009TNH.bam released s3://encode-public/2016/04/21/eb135abe-f493-486d-8c60-3f0d0e101655/ENCFF009TNH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF015UMJ bigWig bigWig read-depth normalized signal dm6 ENCSR197FZB Control ChIP-seq /fly-donors/ENCDO759QTO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/318860/'], '@type': ['Target', 'Item'], 'name': 'CG31627-dmelanogaster', 'label': 'CG31627', '@id': '/targets/CG31627-dmelanogaster/', 'title': 'CG31627 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'bc137385-e36a-4f1d-8297-201a9b1a4105', 'status': 'released'} dm3 2L 21167444 21186424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF009TNH/ 17346774 Kevin White, UChicago 18f3a93d28911978ce246cb558200599 https://www.encodeproject.org/files/ENCFF015UMJ/@@download/ENCFF015UMJ.bigWig released s3://encode-public/2016/06/20/a66a162c-8569-4fad-b368-62f25aa61103/ENCFF015UMJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF155TQB bigWig bigWig signal of unique reads dm6 ENCSR197FZB Control ChIP-seq /fly-donors/ENCDO759QTO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/318860/'], '@type': ['Target', 'Item'], 'name': 'CG31627-dmelanogaster', 'label': 'CG31627', '@id': '/targets/CG31627-dmelanogaster/', 'title': 'CG31627 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'bc137385-e36a-4f1d-8297-201a9b1a4105', 'status': 'released'} dm3 2L 21167444 21186424 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF009TNH/ 17340373 Kevin White, UChicago 2455a2db317d7e9422fe1ec32f5e3af2 https://www.encodeproject.org/files/ENCFF155TQB/@@download/ENCFF155TQB.bigWig released s3://encode-public/2016/06/20/f11c27ce-aee6-4e1c-a701-444ff87302bc/ENCFF155TQB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF376PBT bam bam unfiltered alignments hg19 ENCSR907JTZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} hg19 2 28521943 28718325 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF256EJW/ 2004291275 ENCODE Processing Pipeline 2ec8fcb49d0b382c9597c48b11be3d45 https://www.encodeproject.org/files/ENCFF376PBT/@@download/ENCFF376PBT.bam released s3://encode-public/2018/02/22/cac2f8df-64eb-465d-9ebb-49b05c5d52bf/ENCFF376PBT.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF256EJW fastq fastq reads ENCSR907JTZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} hg19 2 28521943 28718325 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1818476059 Kevin White, UChicago 3ea9a128dc9c187933dfc5f7c6d03743 SRA:SRR6213937 https://www.encodeproject.org/files/ENCFF256EJW/@@download/ENCFF256EJW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/14/fbac695b-411c-47f9-b3ea-b17a0357768d/ENCFF256EJW.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF309VRW bam bam alignments hg19 ENCSR907JTZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} hg19 2 28521943 28718325 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF256EJW/ 1582989650 ENCODE Processing Pipeline 0e14f79e6e85c1706dda96d4056f2d99 https://www.encodeproject.org/files/ENCFF309VRW/@@download/ENCFF309VRW.bam released s3://encode-public/2016/04/23/056f3681-6f5b-4cfd-9dd0-c3d4d56d1ae1/ENCFF309VRW.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF112NHD bam bam unfiltered alignments GRCh38 ENCSR907JTZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} hg19 2 28521943 28718325 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF256EJW/ 2015420580 ENCODE Processing Pipeline 599990d0ff951159ca551b80e1354a69 https://www.encodeproject.org/files/ENCFF112NHD/@@download/ENCFF112NHD.bam released s3://encode-public/2016/05/06/dcbe8c93-7c90-45a2-90a3-6e5b89795d0b/ENCFF112NHD.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF754VNY bam bam alignments GRCh38 ENCSR907JTZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} hg19 2 28521943 28718325 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF256EJW/ 1582792600 ENCODE Processing Pipeline 32c9287518c8c911ab1c217c9c2cc112 https://www.encodeproject.org/files/ENCFF754VNY/@@download/ENCFF754VNY.bam released s3://encode-public/2016/05/06/c665e530-7b18-41fd-888e-41e9e7117cbf/ENCFF754VNY.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF646LJI bam bam unfiltered alignments GRCh38 ENCSR907JTZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} hg19 2 28521943 28718325 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF256EJW/ 2012126856 ENCODE Processing Pipeline 7dde1eecf21ac9c5c12dc1d510604d19 https://www.encodeproject.org/files/ENCFF646LJI/@@download/ENCFF646LJI.bam released s3://encode-public/2020/10/27/2101866e-07b7-4c0e-86d1-da9fafa2dac1/ENCFF646LJI.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF244MNV bam bam alignments GRCh38 ENCSR907JTZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:FOSL2'], 'aliases': ['michael-snyder:TS-95'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2355/'], '@type': ['Target', 'Item'], 'label': 'FOSL2', 'title': 'FOSL2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6bc403bc-72ba-4a2d-a0cb-70b798666aca', 'schema_version': '14', 'name': 'FOSL2-human', '@id': '/targets/FOSL2-human/', 'status': 'released'} hg19 2 28521943 28718325 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF256EJW/ 1660587510 ENCODE Processing Pipeline 927b53aed8209e7357ad8e05fa3cb063 https://www.encodeproject.org/files/ENCFF244MNV/@@download/ENCFF244MNV.bam released s3://encode-public/2020/10/27/93d19b96-0bd2-4e2e-ab57-b150fc3e01e6/ENCFF244MNV.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF194HOU fastq fastq reads ENCSR264HEB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 843550617 Kevin White, UChicago 06580cc79e955be73faaac278bf95f2f https://www.encodeproject.org/files/ENCFF194HOU/@@download/ENCFF194HOU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/4fef9419-41cc-4a06-87f1-38ff2c20afc9/ENCFF194HOU.fastq.gz ENCFF853UTB bam bam alignments dm3 ENCSR264HEB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF194HOU/ 1036127692 Kevin White, UChicago ce46279d0b0fbb9eba056b68fd292704 https://www.encodeproject.org/files/ENCFF853UTB/@@download/ENCFF853UTB.bam released s3://encode-public/2017/06/19/cb571cab-a7ad-4d2d-94fe-7d553d93a17f/ENCFF853UTB.bam Lab custom dm3 archived ENCFF135CUA bam bam alignments dm6 ENCSR264HEB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF194HOU/ 1031466985 Kevin White, UChicago 6c907c19e8f5e30e903d3375edbc6b6d https://www.encodeproject.org/files/ENCFF135CUA/@@download/ENCFF135CUA.bam released s3://encode-public/2017/06/28/f33d6cd8-5cf1-4d2d-bd9b-9bf27e8cfcb5/ENCFF135CUA.bam Lab custom dm6 released ENCFF430MYM bigWig bigWig signal of unique reads dm3 ENCSR264HEB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF853UTB/ 15319124 Kevin White, UChicago 2cb2ece53f9ec5e735b0e525f5560f9a https://www.encodeproject.org/files/ENCFF430MYM/@@download/ENCFF430MYM.bigWig released s3://encode-public/2017/06/29/4ce6d869-e435-41f6-8c8f-2ad3c0d0b9e0/ENCFF430MYM.bigWig Lab custom dm3 archived ENCFF793NEZ bigWig bigWig read-depth normalized signal dm3 ENCSR264HEB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF853UTB/ 15315699 Kevin White, UChicago 07de23e54f022114b8077879cb024f07 https://www.encodeproject.org/files/ENCFF793NEZ/@@download/ENCFF793NEZ.bigWig released s3://encode-public/2017/06/29/2a3e5217-44b6-4dbf-a28c-80d9aacffb0a/ENCFF793NEZ.bigWig Lab custom dm3 archived ENCFF451NDM bigWig bigWig read-depth normalized signal dm6 ENCSR264HEB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF135CUA/ 17458185 Kevin White, UChicago 2bdbb171f9bd527d0189554121b0ddd8 https://www.encodeproject.org/files/ENCFF451NDM/@@download/ENCFF451NDM.bigWig released s3://encode-public/2017/06/30/7123bfe4-eb8f-4065-8f86-20a52bc7ad4a/ENCFF451NDM.bigWig Lab custom dm6 released ENCFF606XSS bigWig bigWig signal of unique reads dm6 ENCSR264HEB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF135CUA/ 17455395 Kevin White, UChicago 479f1b03b7b8b4313a5a8e517a1e85d5 https://www.encodeproject.org/files/ENCFF606XSS/@@download/ENCFF606XSS.bigWig released s3://encode-public/2017/06/30/e5fbac03-b55f-450c-8487-c26008e41b6e/ENCFF606XSS.bigWig Lab custom dm6 released ENCFF639MIH fastq fastq reads ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF633TME/ 2353397172 Michael Snyder, Stanford ef6707b8a448b41ddfe1c339efe701e5 SRA:SRR6213052 https://www.encodeproject.org/files/ENCFF639MIH/@@download/ENCFF639MIH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/ca319ab4-317a-40d2-83c7-4df718dcb058/ENCFF639MIH.fastq.gz ENCFF633TME fastq fastq reads ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF639MIH/ 2635799496 Michael Snyder, Stanford 835ebe1bfe3e8e820705487f94182e01 SRA:SRR6213052 https://www.encodeproject.org/files/ENCFF633TME/@@download/ENCFF633TME.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/64de518f-07eb-489c-ad8f-e09eeaf38789/ENCFF633TME.fastq.gz ENCFF599GFA bam bam unfiltered alignments GRCh38 ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF633TME/, /files/ENCFF643CGH/, /files/ENCFF639MIH/ 5003216965 ENCODE Processing Pipeline 259d4af1c67f6d53e50f27e4f9067c30 https://www.encodeproject.org/files/ENCFF599GFA/@@download/ENCFF599GFA.bam released s3://encode-public/2016/12/07/ffe3bd65-e0f5-4195-8e67-5e3cba674153/ENCFF599GFA.bam ENCODE3 GRCh38 archived ENCFF664ITJ bam bam alignments hg19 ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF633TME/, /files/ENCFF807MUK/, /files/ENCFF639MIH/ 4095878522 ENCODE Processing Pipeline 584d3c8b662aa3f1d1e392dfb0ac2ce0 https://www.encodeproject.org/files/ENCFF664ITJ/@@download/ENCFF664ITJ.bam released s3://encode-public/2016/12/07/9a781793-acac-42bf-a4f8-fc3f13f3eda4/ENCFF664ITJ.bam ENCODE3 hg19 archived ENCFF967AZU bam bam unfiltered alignments hg19 ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF633TME/, /files/ENCFF807MUK/, /files/ENCFF639MIH/ 4993715194 ENCODE Processing Pipeline 4f51c5c6c34803611c2becfed38ece81 https://www.encodeproject.org/files/ENCFF967AZU/@@download/ENCFF967AZU.bam released s3://encode-public/2016/12/07/1ed592e9-2b61-4a84-9cea-3572024b7820/ENCFF967AZU.bam ENCODE3 hg19 archived ENCFF696CNP bam bam alignments GRCh38 ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF633TME/, /files/ENCFF643CGH/, /files/ENCFF639MIH/ 4101014409 ENCODE Processing Pipeline 77abf6039fa0d52f65e334b071eb3996 https://www.encodeproject.org/files/ENCFF696CNP/@@download/ENCFF696CNP.bam released s3://encode-public/2016/12/07/02d3ca6a-0772-44b1-b455-4bdf97d3864a/ENCFF696CNP.bam ENCODE3 GRCh38 archived ENCFF806UPY bam bam alignments GRCh38 ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF639MIH/, /files/ENCFF633TME/ 4038958233 ENCODE Processing Pipeline d6dd7362974b7a07c68abe8aba5b1103 https://www.encodeproject.org/files/ENCFF806UPY/@@download/ENCFF806UPY.bam released s3://encode-public/2020/06/03/4d8ee3f2-c9d2-48e6-9bc0-dfabc57a615b/ENCFF806UPY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF808GJG bam bam unfiltered alignments GRCh38 ENCSR061CNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF639MIH/, /files/ENCFF633TME/ 5000239827 ENCODE Processing Pipeline 311a425ff88d97bf2ff652e970b24fbd https://www.encodeproject.org/files/ENCFF808GJG/@@download/ENCFF808GJG.bam released s3://encode-public/2020/06/03/04d3f31e-bc12-4b44-ae77-3cd29c2ab651/ENCFF808GJG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF996NMH fastq fastq reads ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 804307116 Kevin White, UChicago 44e5a60e76a0e5130f278611c76b666c SRA:SRR10049570 https://www.encodeproject.org/files/ENCFF996NMH/@@download/ENCFF996NMH.fastq.gz Illumina HiSeq 2500 /files/ENCFF455LJL/, /files/ENCFF446PVB/ released s3://encode-public/2016/03/14/1abb1498-f6e6-443d-8a71-c2cb908e3b79/ENCFF996NMH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF959MSU fastq fastq reads ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 973321067 Kevin White, UChicago 5e9bf44ab1876af3083579bcd115392b SRA:SRR10049571 https://www.encodeproject.org/files/ENCFF959MSU/@@download/ENCFF959MSU.fastq.gz Illumina HiSeq 2500 /files/ENCFF455LJL/, /files/ENCFF446PVB/ released s3://encode-public/2016/03/26/c197ce5d-f122-433e-9208-0189834d4d6d/ENCFF959MSU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF112DPE bam bam unfiltered alignments GRCh38 ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF996NMH/, /files/ENCFF643CGH/, /files/ENCFF959MSU/ 1903078934 ENCODE Processing Pipeline 7ef5500fb8cc4e1163f068bd22e063d3 https://www.encodeproject.org/files/ENCFF112DPE/@@download/ENCFF112DPE.bam released s3://encode-public/2016/08/30/93a79f56-a84c-4e4a-94b2-c6ed3d398da8/ENCFF112DPE.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF256EBS bam bam alignments GRCh38 ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF996NMH/, /files/ENCFF643CGH/, /files/ENCFF959MSU/ 1465826993 ENCODE Processing Pipeline 3a7e32e45b9ce3723a9f41fe5b866302 https://www.encodeproject.org/files/ENCFF256EBS/@@download/ENCFF256EBS.bam released s3://encode-public/2016/08/30/471ba5c9-59e6-4c15-81f5-c58fad4f7098/ENCFF256EBS.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF833EYI bam bam unfiltered alignments hg19 ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF996NMH/, /files/ENCFF807MUK/, /files/ENCFF959MSU/ 1895179818 ENCODE Processing Pipeline a6c0b6fb087a94d52e9b0a4c460ee379 https://www.encodeproject.org/files/ENCFF833EYI/@@download/ENCFF833EYI.bam released s3://encode-public/2016/08/30/1aaac3f5-ccb1-4cde-a7f1-dc6736d03a3a/ENCFF833EYI.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF171NJW bam bam alignments hg19 ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF996NMH/, /files/ENCFF807MUK/, /files/ENCFF959MSU/ 1466510874 ENCODE Processing Pipeline c9a039c72e79a8a549a1cf7b938ed823 https://www.encodeproject.org/files/ENCFF171NJW/@@download/ENCFF171NJW.bam released s3://encode-public/2016/08/30/4c42e1b6-2683-4566-b649-ee0231d8114e/ENCFF171NJW.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF980LML bam bam unfiltered alignments GRCh38 ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF996NMH/, /files/ENCFF110MCL/, /files/ENCFF959MSU/ 1900416458 ENCODE Processing Pipeline fa23bb5341f99f95254ff95ed063eeae https://www.encodeproject.org/files/ENCFF980LML/@@download/ENCFF980LML.bam released s3://encode-public/2020/10/27/8b96f626-e999-4d94-aafe-26083ce49e38/ENCFF980LML.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF767CLN bam bam alignments GRCh38 ENCSR529YPZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7716/'], '@type': ['Target', 'Item'], 'name': 'VEZF1-human', 'label': 'VEZF1', '@id': '/targets/VEZF1-human/', 'title': 'VEZF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afcb4612-251f-461c-a364-8df160352330', 'status': 'released'} DNA 2016-11-30 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF996NMH/, /files/ENCFF110MCL/, /files/ENCFF959MSU/ 1552049751 ENCODE Processing Pipeline 1d36fc39958abe908ea25d49960653a5 https://www.encodeproject.org/files/ENCFF767CLN/@@download/ENCFF767CLN.bam released s3://encode-public/2020/10/27/eb20a452-f8fd-4d9a-88e7-04e30d3b1a0f/ENCFF767CLN.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF260BOZ fastq fastq reads ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 175256020 Michael Snyder, Stanford 8222cb53c8005b957b3551b8938e8aa9 https://www.encodeproject.org/files/ENCFF260BOZ/@@download/ENCFF260BOZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a48189f7-e5a1-4cc6-816e-1142af6679c0/ENCFF260BOZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF312MDW fastq fastq reads ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 227074582 Michael Snyder, Stanford 4410035c38185e98a9a25415f1e72926 https://www.encodeproject.org/files/ENCFF312MDW/@@download/ENCFF312MDW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/5c0ee6d3-2fdf-44dc-91fc-60835e5abf45/ENCFF312MDW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF516VKL bam bam alignments ce10 ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF260BOZ/, /files/ENCFF312MDW/, /files/ENCFF987UMF/ 513927761 Kevin White, UChicago 7afb72e17f951526710feda84168844c https://www.encodeproject.org/files/ENCFF516VKL/@@download/ENCFF516VKL.bam released s3://encode-public/2016/10/18/2d2dfb33-b91e-4101-9b37-b25fd2396384/ENCFF516VKL.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF921MSI bam bam alignments ce11 ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF260BOZ/, /files/ENCFF312MDW/, /files/ENCFF586MOL/ 514425381 Kevin White, UChicago 9b590b79ee209232008fd53bb84e5343 https://www.encodeproject.org/files/ENCFF921MSI/@@download/ENCFF921MSI.bam released s3://encode-public/2016/10/18/11106954-fb48-4351-afba-675943d1c9a8/ENCFF921MSI.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF508KIE bigWig bigWig signal of unique reads ce10 ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF516VKL/ 9990447 Kevin White, UChicago d2588cb5b8e117633ebf4eec11ba9143 https://www.encodeproject.org/files/ENCFF508KIE/@@download/ENCFF508KIE.bigWig released s3://encode-public/2016/10/20/827b2ed6-2eb7-4715-b13c-c47c1784e643/ENCFF508KIE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF575TUU bigWig bigWig read-depth normalized signal ce10 ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF516VKL/ 10031535 Kevin White, UChicago d242464746e3be225a6335958a01ea02 https://www.encodeproject.org/files/ENCFF575TUU/@@download/ENCFF575TUU.bigWig released s3://encode-public/2016/10/20/24e057ca-114e-4656-ad8e-92cdcc2a8bf3/ENCFF575TUU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF002TCH bigWig bigWig read-depth normalized signal ce11 ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF921MSI/ 10026397 Kevin White, UChicago 95dd5a848dbf3b1fa6af52ea23cd8267 https://www.encodeproject.org/files/ENCFF002TCH/@@download/ENCFF002TCH.bigWig released s3://encode-public/2016/10/20/8a42ae71-6056-4379-b486-01b45e3ea39a/ENCFF002TCH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF420NUF bigWig bigWig signal of unique reads ce11 ENCSR177KQK Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF921MSI/ 9988627 Kevin White, UChicago a6c3e51dc30c111b1ea2998851f94437 https://www.encodeproject.org/files/ENCFF420NUF/@@download/ENCFF420NUF.bigWig released s3://encode-public/2016/10/20/6078a38d-70cb-4f67-abb7-b00a4e31f251/ENCFF420NUF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF067GCV fastq fastq reads ENCSR234NAI Control ChIP-seq /worm-donors/ENCDO297IGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180403/'], '@type': ['Target', 'Item'], 'name': 'B0310.2-celegans', 'label': 'B0310.2', '@id': '/targets/B0310.2-celegans/', 'title': 'B0310.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7f14fea8-72a6-47e7-9947-671fa098f1cf', 'status': 'released'} ce11 X 484810 522985 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 697834882 Kevin White, UChicago d3d1b420a6152adda6befe9dd24578fb https://www.encodeproject.org/files/ENCFF067GCV/@@download/ENCFF067GCV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/48a23e2b-20dc-4266-9ebb-5eccac623cd7/ENCFF067GCV.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF878VVJ bam bam alignments ce10 ENCSR234NAI Control ChIP-seq /worm-donors/ENCDO297IGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180403/'], '@type': ['Target', 'Item'], 'name': 'B0310.2-celegans', 'label': 'B0310.2', '@id': '/targets/B0310.2-celegans/', 'title': 'B0310.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7f14fea8-72a6-47e7-9947-671fa098f1cf', 'status': 'released'} ce11 X 484810 522985 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF067GCV/, /files/ENCFF987UMF/ 914359073 Kevin White, UChicago b15a7443ce213a447aecf40dc5ae6ebb https://www.encodeproject.org/files/ENCFF878VVJ/@@download/ENCFF878VVJ.bam released s3://encode-public/2016/10/04/4c7afe24-d205-4f5d-9abe-e6c8d75d6234/ENCFF878VVJ.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF998RZQ bam bam alignments ce11 ENCSR234NAI Control ChIP-seq /worm-donors/ENCDO297IGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180403/'], '@type': ['Target', 'Item'], 'name': 'B0310.2-celegans', 'label': 'B0310.2', '@id': '/targets/B0310.2-celegans/', 'title': 'B0310.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7f14fea8-72a6-47e7-9947-671fa098f1cf', 'status': 'released'} ce11 X 484810 522985 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF067GCV/, /files/ENCFF586MOL/ 915148262 Kevin White, UChicago 26c03176c49012c366d12c1e378c2281 https://www.encodeproject.org/files/ENCFF998RZQ/@@download/ENCFF998RZQ.bam released s3://encode-public/2016/10/05/bb5ae9a1-62c0-4109-9ca0-8103e75ab82a/ENCFF998RZQ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF382SAD bigWig bigWig signal of unique reads ce10 ENCSR234NAI Control ChIP-seq /worm-donors/ENCDO297IGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180403/'], '@type': ['Target', 'Item'], 'name': 'B0310.2-celegans', 'label': 'B0310.2', '@id': '/targets/B0310.2-celegans/', 'title': 'B0310.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7f14fea8-72a6-47e7-9947-671fa098f1cf', 'status': 'released'} ce11 X 484810 522985 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF878VVJ/ 9935562 Kevin White, UChicago 39d4659fdb25752c1bc252239a1a5e91 https://www.encodeproject.org/files/ENCFF382SAD/@@download/ENCFF382SAD.bigWig released s3://encode-public/2016/10/06/678128f5-7645-497d-a5ee-b019bdec6403/ENCFF382SAD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF613ZQJ bigWig bigWig read-depth normalized signal ce10 ENCSR234NAI Control ChIP-seq /worm-donors/ENCDO297IGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180403/'], '@type': ['Target', 'Item'], 'name': 'B0310.2-celegans', 'label': 'B0310.2', '@id': '/targets/B0310.2-celegans/', 'title': 'B0310.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7f14fea8-72a6-47e7-9947-671fa098f1cf', 'status': 'released'} ce11 X 484810 522985 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF878VVJ/ 9967222 Kevin White, UChicago 84dd27cff115b3693726133f5bef10b3 https://www.encodeproject.org/files/ENCFF613ZQJ/@@download/ENCFF613ZQJ.bigWig released s3://encode-public/2016/10/06/bd20b0c9-4a52-49e7-a707-2146bb958114/ENCFF613ZQJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF508SVQ bigWig bigWig read-depth normalized signal ce11 ENCSR234NAI Control ChIP-seq /worm-donors/ENCDO297IGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180403/'], '@type': ['Target', 'Item'], 'name': 'B0310.2-celegans', 'label': 'B0310.2', '@id': '/targets/B0310.2-celegans/', 'title': 'B0310.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7f14fea8-72a6-47e7-9947-671fa098f1cf', 'status': 'released'} ce11 X 484810 522985 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF998RZQ/ 9967222 Kevin White, UChicago a12d421edcca349a9b94b5043c53acaa https://www.encodeproject.org/files/ENCFF508SVQ/@@download/ENCFF508SVQ.bigWig released s3://encode-public/2016/10/06/c626aacd-fc9c-4fd4-9824-59a6d2c9d727/ENCFF508SVQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF070VRH bigWig bigWig signal of unique reads ce11 ENCSR234NAI Control ChIP-seq /worm-donors/ENCDO297IGU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180403/'], '@type': ['Target', 'Item'], 'name': 'B0310.2-celegans', 'label': 'B0310.2', '@id': '/targets/B0310.2-celegans/', 'title': 'B0310.2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7f14fea8-72a6-47e7-9947-671fa098f1cf', 'status': 'released'} ce11 X 484810 522985 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF998RZQ/ 9935564 Kevin White, UChicago 4c2c3c56f02f1edd6f14f667c1ee7854 https://www.encodeproject.org/files/ENCFF070VRH/@@download/ENCFF070VRH.bigWig released s3://encode-public/2016/10/06/30e86643-c52e-4523-b4d7-4461e152e392/ENCFF070VRH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF030SEA fastq fastq reads ENCSR225LWH Control ChIP-seq /worm-donors/ENCDO226NKQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180751/'], '@type': ['Target', 'Item'], 'name': 'mls-2-celegans', 'label': 'mls-2', '@id': '/targets/mls-2-celegans/', 'title': 'mls-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aa7ea93f-a5ff-4d08-b434-a4aa5565745c', 'status': 'released'} ce11 X 4747377 4782527 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 2856534914 Kevin White, UChicago 2e51b8bcf30646fb7ff01a63205da49f https://www.encodeproject.org/files/ENCFF030SEA/@@download/ENCFF030SEA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/bdd36860-23f1-4957-9650-5cf645868f06/ENCFF030SEA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF080HXK bam bam alignments ce10 ENCSR225LWH Control ChIP-seq /worm-donors/ENCDO226NKQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180751/'], '@type': ['Target', 'Item'], 'name': 'mls-2-celegans', 'label': 'mls-2', '@id': '/targets/mls-2-celegans/', 'title': 'mls-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aa7ea93f-a5ff-4d08-b434-a4aa5565745c', 'status': 'released'} ce11 X 4747377 4782527 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF030SEA/, /files/ENCFF987UMF/ 3793978241 Kevin White, UChicago 3bf220f46a3d4778ae244484da2427eb https://www.encodeproject.org/files/ENCFF080HXK/@@download/ENCFF080HXK.bam released s3://encode-public/2016/10/04/d55904fe-d4c2-499c-9765-5b6919ad2e77/ENCFF080HXK.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF379IRU bam bam alignments ce11 ENCSR225LWH Control ChIP-seq /worm-donors/ENCDO226NKQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180751/'], '@type': ['Target', 'Item'], 'name': 'mls-2-celegans', 'label': 'mls-2', '@id': '/targets/mls-2-celegans/', 'title': 'mls-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aa7ea93f-a5ff-4d08-b434-a4aa5565745c', 'status': 'released'} ce11 X 4747377 4782527 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF030SEA/, /files/ENCFF586MOL/ 3797154104 Kevin White, UChicago ec3e6a737a65b70579dab293886571f8 https://www.encodeproject.org/files/ENCFF379IRU/@@download/ENCFF379IRU.bam released s3://encode-public/2016/10/05/2c2fedbf-28df-4747-93ad-984b38e0d218/ENCFF379IRU.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF213PKZ bigWig bigWig read-depth normalized signal ce10 ENCSR225LWH Control ChIP-seq /worm-donors/ENCDO226NKQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180751/'], '@type': ['Target', 'Item'], 'name': 'mls-2-celegans', 'label': 'mls-2', '@id': '/targets/mls-2-celegans/', 'title': 'mls-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aa7ea93f-a5ff-4d08-b434-a4aa5565745c', 'status': 'released'} ce11 X 4747377 4782527 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF080HXK/ 10033835 Kevin White, UChicago 53b6f19fdbad5f789c9417c34ae32078 https://www.encodeproject.org/files/ENCFF213PKZ/@@download/ENCFF213PKZ.bigWig released s3://encode-public/2016/10/06/fa858dc0-d5f7-410d-a94d-21e6a4fd7bb1/ENCFF213PKZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF495ZBF bigWig bigWig signal of unique reads ce10 ENCSR225LWH Control ChIP-seq /worm-donors/ENCDO226NKQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180751/'], '@type': ['Target', 'Item'], 'name': 'mls-2-celegans', 'label': 'mls-2', '@id': '/targets/mls-2-celegans/', 'title': 'mls-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aa7ea93f-a5ff-4d08-b434-a4aa5565745c', 'status': 'released'} ce11 X 4747377 4782527 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF080HXK/ 9973472 Kevin White, UChicago d9cffde9fddbec51e528c74c45047cc4 https://www.encodeproject.org/files/ENCFF495ZBF/@@download/ENCFF495ZBF.bigWig released s3://encode-public/2016/10/06/eed987af-8006-42ee-8d3f-66a70813e2a5/ENCFF495ZBF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF168EHJ bigWig bigWig read-depth normalized signal ce11 ENCSR225LWH Control ChIP-seq /worm-donors/ENCDO226NKQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180751/'], '@type': ['Target', 'Item'], 'name': 'mls-2-celegans', 'label': 'mls-2', '@id': '/targets/mls-2-celegans/', 'title': 'mls-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aa7ea93f-a5ff-4d08-b434-a4aa5565745c', 'status': 'released'} ce11 X 4747377 4782527 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF379IRU/ 10033838 Kevin White, UChicago 4185d8cc68b542828e4463f373328c5f https://www.encodeproject.org/files/ENCFF168EHJ/@@download/ENCFF168EHJ.bigWig released s3://encode-public/2016/10/06/b4246d44-d829-42c5-ac42-10fdf00571d9/ENCFF168EHJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF293BWU bigWig bigWig signal of unique reads ce11 ENCSR225LWH Control ChIP-seq /worm-donors/ENCDO226NKQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180751/'], '@type': ['Target', 'Item'], 'name': 'mls-2-celegans', 'label': 'mls-2', '@id': '/targets/mls-2-celegans/', 'title': 'mls-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'aa7ea93f-a5ff-4d08-b434-a4aa5565745c', 'status': 'released'} ce11 X 4747377 4782527 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF379IRU/ 9973469 Kevin White, UChicago 1d48642c9e6d1201ba6398e9a6311f20 https://www.encodeproject.org/files/ENCFF293BWU/@@download/ENCFF293BWU.bigWig released s3://encode-public/2016/10/06/5988b011-ee12-4d2f-a049-f2f61b8c5f31/ENCFF293BWU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF425ONK bam bam alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF105BMZ/ 744791885 ENCODE Processing Pipeline c20ea0e1dd95ee2a1014ed3c211cd275 https://www.encodeproject.org/files/ENCFF425ONK/@@download/ENCFF425ONK.bam released s3://encode-public/2020/09/30/42e58eb1-488f-4adc-a01b-0212d362567a/ENCFF425ONK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF090GDX bam bam alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF538KMT/ 946277676 ENCODE Processing Pipeline e0f8643d5053bfed204c6600cbed5214 https://www.encodeproject.org/files/ENCFF090GDX/@@download/ENCFF090GDX.bam released s3://encode-public/2020/09/30/76908f69-fbd9-4538-9f61-92fb3c23315f/ENCFF090GDX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF906AST bam bam alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF685JOQ/ 897514503 ENCODE Processing Pipeline 25f06c224c4c060fea75b463e8508305 https://www.encodeproject.org/files/ENCFF906AST/@@download/ENCFF906AST.bam released s3://encode-public/2020/09/30/58c0e669-2976-4ef9-916a-3e361753ba4f/ENCFF906AST.bam ENCODE4 v1.5.1 GRCh38 released ENCFF538KMT fastq fastq reads ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 822314765 Tim Reddy, Duke 7b1c480c451debc522128ed508aa549f SRA:SRR5129549 https://www.encodeproject.org/files/ENCFF538KMT/@@download/ENCFF538KMT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/8853063b-8983-4caa-8d81-4a10ebdf11c1/ENCFF538KMT.fastq.gz ENCFF105BMZ fastq fastq reads ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 661933122 Tim Reddy, Duke 8ae776671b2197f70f76cac0de33004d SRA:SRR5129550 https://www.encodeproject.org/files/ENCFF105BMZ/@@download/ENCFF105BMZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/24e379fb-646f-4ba1-b83b-8168a6d13627/ENCFF105BMZ.fastq.gz ENCFF685JOQ fastq fastq reads ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 781852793 Tim Reddy, Duke 5b3bfff05d96942438924d36a625881b SRA:SRR5129548 https://www.encodeproject.org/files/ENCFF685JOQ/@@download/ENCFF685JOQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/6daac5b9-d78c-4113-98e8-9cf4daa4777c/ENCFF685JOQ.fastq.gz ENCFF653HKQ bam bam alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF538KMT/ 897852426 Tim Reddy, Duke b729483ace3ade0df11cc6afd2ff339c https://www.encodeproject.org/files/ENCFF653HKQ/@@download/ENCFF653HKQ.bam released s3://encode-public/2016/12/15/2580505c-9921-412d-a7d7-353f83ab81c5/ENCFF653HKQ.bam Lab custom GRCh38 archived ENCFF097CSC bam bam alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF105BMZ/ 712477208 Tim Reddy, Duke c797882eddfb9a09af0d564f11494da0 https://www.encodeproject.org/files/ENCFF097CSC/@@download/ENCFF097CSC.bam released s3://encode-public/2016/12/15/49d769ed-0822-4cda-8070-f2a732d8cd1f/ENCFF097CSC.bam Lab custom GRCh38 archived ENCFF987XCE bam bam alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF685JOQ/ 852527079 Tim Reddy, Duke b51e7dd805318d94b7ebf0d8a6f1eff7 https://www.encodeproject.org/files/ENCFF987XCE/@@download/ENCFF987XCE.bam released s3://encode-public/2016/12/15/53ff5fe7-4fba-4c1a-9428-f209800e1ee8/ENCFF987XCE.bam Lab custom GRCh38 archived ENCFF692DBX bam bam unfiltered alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF105BMZ/ 891699096 ENCODE Processing Pipeline a0900d344b31030e8797c595b1fa93f7 https://www.encodeproject.org/files/ENCFF692DBX/@@download/ENCFF692DBX.bam released s3://encode-public/2020/09/30/a535e98e-c2d2-415d-8442-1faffbb05f61/ENCFF692DBX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF137WMY bam bam unfiltered alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF685JOQ/ 1061584724 ENCODE Processing Pipeline 10a6c613feaa169424ea714fa09d36cf https://www.encodeproject.org/files/ENCFF137WMY/@@download/ENCFF137WMY.bam released s3://encode-public/2020/09/30/a45ccebc-9fc0-4502-8948-cc7a56f9ea12/ENCFF137WMY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF807USC bam bam unfiltered alignments GRCh38 ENCSR139PCE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF538KMT/ 1105827025 ENCODE Processing Pipeline e3eb509fe7d7a967223c87c537f37639 https://www.encodeproject.org/files/ENCFF807USC/@@download/ENCFF807USC.bam released s3://encode-public/2020/09/30/7a3a34a2-09c8-4d11-a833-06e83fea3e8f/ENCFF807USC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF021SQL fastq fastq reads ENCSR792YVU Control ChIP-seq /fly-donors/ENCDO240VFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43557/'], '@type': ['Target', 'Item'], 'name': 'CG11504-dmelanogaster', 'label': 'CG11504', '@id': '/targets/CG11504-dmelanogaster/', 'title': 'CG11504 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '759aa362-d3ac-4ed4-8664-6ee9ae67d834', 'status': 'released'} dm3 3R 25815356 25835078 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1500608811 Kevin White, UChicago 55a4d621232fecf33d40c74b7eeac90d https://www.encodeproject.org/files/ENCFF021SQL/@@download/ENCFF021SQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/f8bcfa05-f394-40f2-a3ce-e7e30d311776/ENCFF021SQL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF173ZIP bam bam alignments dm6 ENCSR792YVU Control ChIP-seq /fly-donors/ENCDO240VFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43557/'], '@type': ['Target', 'Item'], 'name': 'CG11504-dmelanogaster', 'label': 'CG11504', '@id': '/targets/CG11504-dmelanogaster/', 'title': 'CG11504 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '759aa362-d3ac-4ed4-8664-6ee9ae67d834', 'status': 'released'} dm3 3R 25815356 25835078 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF021SQL/, /files/ENCFF479RCH/ 2023639306 Kevin White, UChicago e8c97981c41f23e6620a57eec992f45c https://www.encodeproject.org/files/ENCFF173ZIP/@@download/ENCFF173ZIP.bam released s3://encode-public/2019/04/13/a86981ea-ebfe-40f0-82e5-802bffd01883/ENCFF173ZIP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF588IGD bigWig bigWig read-depth normalized signal dm6 ENCSR792YVU Control ChIP-seq /fly-donors/ENCDO240VFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43557/'], '@type': ['Target', 'Item'], 'name': 'CG11504-dmelanogaster', 'label': 'CG11504', '@id': '/targets/CG11504-dmelanogaster/', 'title': 'CG11504 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '759aa362-d3ac-4ed4-8664-6ee9ae67d834', 'status': 'released'} dm3 3R 25815356 25835078 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF173ZIP/ 17824585 Kevin White, UChicago 2d12f0c63299b620f41eee9d9637e465 https://www.encodeproject.org/files/ENCFF588IGD/@@download/ENCFF588IGD.bigWig released s3://encode-public/2019/04/16/51aee693-9b3c-43b3-a136-c39eb7a50b8d/ENCFF588IGD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF251UOC bigWig bigWig signal of unique reads dm6 ENCSR792YVU Control ChIP-seq /fly-donors/ENCDO240VFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43557/'], '@type': ['Target', 'Item'], 'name': 'CG11504-dmelanogaster', 'label': 'CG11504', '@id': '/targets/CG11504-dmelanogaster/', 'title': 'CG11504 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '759aa362-d3ac-4ed4-8664-6ee9ae67d834', 'status': 'released'} dm3 3R 25815356 25835078 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF173ZIP/ 17849648 Kevin White, UChicago 377c319a9012cadcda0cbfcbf9d229ff https://www.encodeproject.org/files/ENCFF251UOC/@@download/ENCFF251UOC.bigWig released s3://encode-public/2019/04/16/a608c755-2d07-4959-98c5-d4fc125e4d31/ENCFF251UOC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF190AMK fastq fastq reads ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF164UIN/ 2743088279 Michael Snyder, Stanford 86efd9a15f1d7cb4ae303c73c903eaa4 SRA:SRR6213011 https://www.encodeproject.org/files/ENCFF190AMK/@@download/ENCFF190AMK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/6fb4ef68-f967-484f-b4f6-ccaae9501c39/ENCFF190AMK.fastq.gz ENCFF164UIN fastq fastq reads ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF190AMK/ 3204629241 Michael Snyder, Stanford 1c9607d7659608bff327727cad48c086 SRA:SRR6213011 https://www.encodeproject.org/files/ENCFF164UIN/@@download/ENCFF164UIN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/d7d7f6c1-1d4a-44d6-8b15-959334d097ea/ENCFF164UIN.fastq.gz ENCFF265XQG bam bam unfiltered alignments GRCh38 ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF190AMK/, /files/ENCFF643CGH/, /files/ENCFF164UIN/ 5873297529 ENCODE Processing Pipeline 2308f319e641d80dacde410d58fef907 https://www.encodeproject.org/files/ENCFF265XQG/@@download/ENCFF265XQG.bam released s3://encode-public/2017/03/17/a2c0ea6d-757b-4f69-93bb-6a3db8619e7d/ENCFF265XQG.bam ENCODE3 GRCh38 archived ENCFF175ZBO bam bam unfiltered alignments hg19 ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF190AMK/, /files/ENCFF807MUK/, /files/ENCFF164UIN/ 5866664027 ENCODE Processing Pipeline 1450f9c7a00545a7ffc78fb3f6097f59 https://www.encodeproject.org/files/ENCFF175ZBO/@@download/ENCFF175ZBO.bam released s3://encode-public/2017/03/17/0248f839-93ae-43e7-82af-ac2d37960bd6/ENCFF175ZBO.bam ENCODE3 hg19 archived ENCFF447SCU bam bam alignments hg19 ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF190AMK/, /files/ENCFF807MUK/, /files/ENCFF164UIN/ 4577114911 ENCODE Processing Pipeline 6fdb9a6ab7e294cb9b4fdd05ccd533d1 https://www.encodeproject.org/files/ENCFF447SCU/@@download/ENCFF447SCU.bam released s3://encode-public/2017/03/17/a1f0fb27-c9b7-4a3e-90f7-fa6eaf6874f2/ENCFF447SCU.bam ENCODE3 hg19 archived ENCFF879BET bam bam alignments GRCh38 ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF190AMK/, /files/ENCFF643CGH/, /files/ENCFF164UIN/ 4584989174 ENCODE Processing Pipeline a6a63a9c1c86c569e224fe0227b3c409 https://www.encodeproject.org/files/ENCFF879BET/@@download/ENCFF879BET.bam released s3://encode-public/2017/03/17/43bb63be-c8e2-4693-8210-06d7c7de811f/ENCFF879BET.bam ENCODE3 GRCh38 archived ENCFF747CKF bam bam unfiltered alignments GRCh38 ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF190AMK/, /files/ENCFF164UIN/ 5865825406 ENCODE Processing Pipeline 95cdeddf35d7c581b6d0b41ff9420c0c https://www.encodeproject.org/files/ENCFF747CKF/@@download/ENCFF747CKF.bam released s3://encode-public/2020/06/03/7c5e3abf-4a29-4e2b-ac9e-8193f16c53b5/ENCFF747CKF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF787LCD bam bam alignments GRCh38 ENCSR253FAH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF190AMK/, /files/ENCFF164UIN/ 4499054368 ENCODE Processing Pipeline 383ea4b4611a3168fbc7bfa2886d94c8 https://www.encodeproject.org/files/ENCFF787LCD/@@download/ENCFF787LCD.bam released s3://encode-public/2020/06/03/25ba859a-36df-4c5d-bdb4-3b03a1e22b70/ENCFF787LCD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF372AQI fastq fastq reads ENCSR782KIM Control ChIP-seq /fly-donors/ENCDO023UMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40937/'], '@type': ['Target', 'Item'], 'name': 'CG2678-dmelanogaster', 'label': 'CG2678', '@id': '/targets/CG2678-dmelanogaster/', 'title': 'CG2678 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b202c9b-3eb8-4c0f-83a6-a318320bbf26', 'status': 'released'} dm3 3R 3731156 3754039 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3546838441 Kevin White, UChicago 57a2b7d61a16339b48b40e7d5cd5cea4 https://www.encodeproject.org/files/ENCFF372AQI/@@download/ENCFF372AQI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/a84cd9c2-7ece-4cb4-91c5-abeafa0ff46f/ENCFF372AQI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF996QRE bam bam alignments dm6 ENCSR782KIM Control ChIP-seq /fly-donors/ENCDO023UMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40937/'], '@type': ['Target', 'Item'], 'name': 'CG2678-dmelanogaster', 'label': 'CG2678', '@id': '/targets/CG2678-dmelanogaster/', 'title': 'CG2678 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b202c9b-3eb8-4c0f-83a6-a318320bbf26', 'status': 'released'} dm3 3R 3731156 3754039 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF372AQI/, /files/ENCFF479RCH/ 4845755924 Kevin White, UChicago 10275e0257ccb691406f4a772ee4cf75 https://www.encodeproject.org/files/ENCFF996QRE/@@download/ENCFF996QRE.bam released s3://encode-public/2019/04/13/e38824a7-73f3-4b04-b6d1-7a926b258af1/ENCFF996QRE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF502HRI bigWig bigWig read-depth normalized signal dm6 ENCSR782KIM Control ChIP-seq /fly-donors/ENCDO023UMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40937/'], '@type': ['Target', 'Item'], 'name': 'CG2678-dmelanogaster', 'label': 'CG2678', '@id': '/targets/CG2678-dmelanogaster/', 'title': 'CG2678 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b202c9b-3eb8-4c0f-83a6-a318320bbf26', 'status': 'released'} dm3 3R 3731156 3754039 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF996QRE/ 18057789 Kevin White, UChicago 723d4cd1864c1fc81bb58a6681f4f4f3 https://www.encodeproject.org/files/ENCFF502HRI/@@download/ENCFF502HRI.bigWig released s3://encode-public/2019/04/16/98286174-aeba-4f95-a140-011f1d4f100c/ENCFF502HRI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF502LEM bigWig bigWig signal of unique reads dm6 ENCSR782KIM Control ChIP-seq /fly-donors/ENCDO023UMC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40937/'], '@type': ['Target', 'Item'], 'name': 'CG2678-dmelanogaster', 'label': 'CG2678', '@id': '/targets/CG2678-dmelanogaster/', 'title': 'CG2678 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6b202c9b-3eb8-4c0f-83a6-a318320bbf26', 'status': 'released'} dm3 3R 3731156 3754039 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF996QRE/ 18014533 Kevin White, UChicago a1621e2410dc5122b1540139946f02fd https://www.encodeproject.org/files/ENCFF502LEM/@@download/ENCFF502LEM.bigWig released s3://encode-public/2019/04/16/5b08febe-37d3-455b-9d29-414ca36a9b46/ENCFF502LEM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF712RLU bigWig bigWig read-depth normalized signal dm6 ENCSR354RHJ Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000992 ovary tissue Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF876AJT/ 17045199 Kevin White, UChicago f715729c7932827dba9b5ae9d02d8062 https://www.encodeproject.org/files/ENCFF712RLU/@@download/ENCFF712RLU.bigWig released s3://encode-public/2019/06/18/eaf63ee5-d9a0-4ddf-acdf-172454f3a834/ENCFF712RLU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF133IGL fastq fastq reads ENCSR354RHJ Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000992 ovary tissue Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 398973790 Kevin White, UChicago 1ec81f352dd413f7678f80019033912d https://www.encodeproject.org/files/ENCFF133IGL/@@download/ENCFF133IGL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/3a29492b-0af8-4da1-b4d8-52e15ceb4e7b/ENCFF133IGL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF876AJT bam bam alignments dm6 ENCSR354RHJ Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000992 ovary tissue Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF133IGL/, /files/ENCFF479RCH/ 512217053 Kevin White, UChicago a2df9ac6ed7c1695a1bd9e377b0f068c https://www.encodeproject.org/files/ENCFF876AJT/@@download/ENCFF876AJT.bam released s3://encode-public/2019/06/18/101531a0-7bed-4aa7-8be7-1857f3a8ec12/ENCFF876AJT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF864NRZ bigWig bigWig signal of unique reads dm6 ENCSR354RHJ Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000992 ovary tissue Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF876AJT/ 17060416 Kevin White, UChicago 2a72237c5faf45ad2ee505a6d55b0fb3 https://www.encodeproject.org/files/ENCFF864NRZ/@@download/ENCFF864NRZ.bigWig released s3://encode-public/2019/06/18/e8450523-28af-4a05-8b56-0ead329c4bd6/ENCFF864NRZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF933EBJ tagAlign tagAlign alignments hg19 ENCSR416ESX Control ChIP-seq /human-donors/ENCDO636RDE/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/SRR1270595/, /files/SRR1270590/ 209932882 Anshul Kundaje, Stanford 90fae164053830b5b7756802d30bb481 https://www.encodeproject.org/files/ENCFF933EBJ/@@download/ENCFF933EBJ.tagAlign.gz archived s3://encode-public/2016/03/30/08d4b6bb-a500-4be4-8ffd-e61e190c3c94/ENCFF933EBJ.tagAlign.gz Lab custom hg19 archived low read length ENCFF132EKN bam bam redacted unfiltered alignments GRCh38 ENCSR416ESX Control ChIP-seq /human-donors/ENCDO636RDE/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF599TBP/, /files/ENCFF643CGH/, /files/ENCFF195XIZ/ 356321476 ENCODE Processing Pipeline af044e16c845df388f02713090a7fcb7 https://www.encodeproject.org/files/ENCFF132EKN/@@download/ENCFF132EKN.bam released s3://encode-public/2017/10/16/0824a78b-e07d-4acc-94e0-9de112f2111f/ENCFF132EKN.bam ENCODE3 GRCh38 archived low read length ENCFF389CPB bam bam redacted alignments GRCh38 ENCSR416ESX Control ChIP-seq /human-donors/ENCDO636RDE/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF599TBP/, /files/ENCFF643CGH/, /files/ENCFF195XIZ/ 191704862 ENCODE Processing Pipeline f5693960b11921714425611f49623a30 https://www.encodeproject.org/files/ENCFF389CPB/@@download/ENCFF389CPB.bam released s3://encode-public/2017/10/16/ba0cd4d1-a382-4ff7-a7e1-8854cd6b20dd/ENCFF389CPB.bam ENCODE3 GRCh38 archived low read length ENCFF952BQS bam bam redacted unfiltered alignments hg19 ENCSR416ESX Control ChIP-seq /human-donors/ENCDO636RDE/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF599TBP/, /files/ENCFF807MUK/, /files/ENCFF195XIZ/ 242238848 ENCODE Processing Pipeline 9705795cdc16445c4ca6e0fb3fbb181b https://www.encodeproject.org/files/ENCFF952BQS/@@download/ENCFF952BQS.bam released s3://encode-public/2018/01/20/96a80f74-77a3-4227-8abf-2f978473f584/ENCFF952BQS.bam ENCODE3 hg19 archived low read length ENCFF736TOX bam bam redacted alignments hg19 ENCSR416ESX Control ChIP-seq /human-donors/ENCDO636RDE/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF599TBP/, /files/ENCFF807MUK/, /files/ENCFF195XIZ/ 159805931 ENCODE Processing Pipeline 2817eeddfb66b58e68d3a8cdb278cc80 https://www.encodeproject.org/files/ENCFF736TOX/@@download/ENCFF736TOX.bam released s3://encode-public/2018/01/20/477e87e4-f52e-46c2-adb5-c98d59d3c5f8/ENCFF736TOX.bam ENCODE3 hg19 archived low read length ENCFF359VBJ bam bam redacted alignments GRCh38 ENCSR416ESX Control ChIP-seq /human-donors/ENCDO636RDE/ UBERON:0002305 layer of hippocampus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF193BXU/, /files/ENCFF561OPO/, /files/ENCFF110MCL/ 1086108636 ENCODE Processing Pipeline 42ce40386c078a39aaa52b0d60452b9a https://www.encodeproject.org/files/ENCFF359VBJ/@@download/ENCFF359VBJ.bam released s3://encode-public/2021/01/28/84d89f32-f5c5-4860-8ce3-344451b8b593/ENCFF359VBJ.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF447JKH fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 439881660 Bradley Bernstein, Broad f492da81155cc6cd0b247087d41d090e SRA:SRR14103913 https://www.encodeproject.org/files/ENCFF447JKH/@@download/ENCFF447JKH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/1774363a-cbcb-4174-af72-7db6fd7353c8/ENCFF447JKH.fastq.gz ENCFF967VDK fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 434962197 Bradley Bernstein, Broad bdee4b3f297598b345011ee9fd568a66 SRA:SRR14103914 https://www.encodeproject.org/files/ENCFF967VDK/@@download/ENCFF967VDK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ffb6c5b0-360b-4347-b415-228ff97b2ad4/ENCFF967VDK.fastq.gz ENCFF194KGB fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 1006284278 Bradley Bernstein, Broad 5de5d0126f3cf684815876ee46ed58ae SRA:SRR14103909 https://www.encodeproject.org/files/ENCFF194KGB/@@download/ENCFF194KGB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6872d5da-6563-4bd6-bc8e-1970a4bc9286/ENCFF194KGB.fastq.gz ENCFF904UAN fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 1021598411 Bradley Bernstein, Broad 76fe93d791d54b4c161fc6604496d07c SRA:SRR14103910 https://www.encodeproject.org/files/ENCFF904UAN/@@download/ENCFF904UAN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/86e78899-b35c-4981-9820-ddea45b5f77a/ENCFF904UAN.fastq.gz ENCFF232TNP fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 1006564224 Bradley Bernstein, Broad e951332eb53a20fe560d247466f78976 SRA:SRR14103911 https://www.encodeproject.org/files/ENCFF232TNP/@@download/ENCFF232TNP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2e3533a7-ce58-4d20-bdf6-2cd8faf11894/ENCFF232TNP.fastq.gz ENCFF555QNZ fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 440024862 Bradley Bernstein, Broad 8cc83ecb7d12e562386a6f4050d5ba0c SRA:SRR14103915 https://www.encodeproject.org/files/ENCFF555QNZ/@@download/ENCFF555QNZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/fe09676a-4218-4b40-9497-8ec574054136/ENCFF555QNZ.fastq.gz ENCFF748ABB fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 447584435 Bradley Bernstein, Broad 679659cb579b95f53eb2a9ef0674fe1a SRA:SRR14103916 https://www.encodeproject.org/files/ENCFF748ABB/@@download/ENCFF748ABB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/206e6f91-7d43-4e5c-82c8-57a877d6bde1/ENCFF748ABB.fastq.gz ENCFF725CDP fastq fastq reads ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 994725404 Bradley Bernstein, Broad 1a358eae56521fb05676493a60a0b987 SRA:SRR14103912 https://www.encodeproject.org/files/ENCFF725CDP/@@download/ENCFF725CDP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e5741520-fe60-4f06-b6a7-af3d9a89ef0f/ENCFF725CDP.fastq.gz ENCFF768PVZ bam bam unfiltered alignments GRCh38 ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF555QNZ/, /files/ENCFF194KGB/, /files/ENCFF748ABB/, /files/ENCFF725CDP/, /files/ENCFF967VDK/, /files/ENCFF904UAN/, /files/ENCFF110MCL/, /files/ENCFF447JKH/, /files/ENCFF232TNP/ 5357658671 ENCODE Processing Pipeline 8a88f5ad3c5c78299fc6d589b135bc2b https://www.encodeproject.org/files/ENCFF768PVZ/@@download/ENCFF768PVZ.bam released s3://encode-public/2020/06/14/32cfdf6c-e3ef-4c45-a9c5-b6dee1b82701/ENCFF768PVZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF228NSW bam bam alignments GRCh38 ENCSR067CHO Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF555QNZ/, /files/ENCFF194KGB/, /files/ENCFF748ABB/, /files/ENCFF725CDP/, /files/ENCFF967VDK/, /files/ENCFF904UAN/, /files/ENCFF110MCL/, /files/ENCFF447JKH/, /files/ENCFF232TNP/ 4496426590 ENCODE Processing Pipeline 442bfc21065a24cbae7b568c6d52f91d https://www.encodeproject.org/files/ENCFF228NSW/@@download/ENCFF228NSW.bam released s3://encode-public/2020/06/14/c61b04a4-6e67-4309-911d-55b289028ee2/ENCFF228NSW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF771GJC fastq fastq reads ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 167746439 Michael Snyder, Stanford e54cd97c2bae1b61d17c2cf980e76562 https://www.encodeproject.org/files/ENCFF771GJC/@@download/ENCFF771GJC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/58f67f89-0569-48b7-b24a-30b44117d7db/ENCFF771GJC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF362WGK fastq fastq reads ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 167484314 Michael Snyder, Stanford 0d2a29a30168d6dd022bff6959fe2218 https://www.encodeproject.org/files/ENCFF362WGK/@@download/ENCFF362WGK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/0897ebf2-4d49-462a-9694-1384f46cc386/ENCFF362WGK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF812DCO bam bam alignments ce10 ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF771GJC/, /files/ENCFF362WGK/, /files/ENCFF987UMF/ 436508820 Kevin White, UChicago 7fcfb7b1f0e3d56a5831e96f999b17d6 https://www.encodeproject.org/files/ENCFF812DCO/@@download/ENCFF812DCO.bam released s3://encode-public/2017/04/27/2c5dd58f-3402-44a6-9d1f-64e862ed714f/ENCFF812DCO.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF497BVQ bam bam alignments ce11 ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF771GJC/, /files/ENCFF362WGK/, /files/ENCFF586MOL/ 436959877 Kevin White, UChicago b957502f378c144a7739d8203c7eea2f https://www.encodeproject.org/files/ENCFF497BVQ/@@download/ENCFF497BVQ.bam released s3://encode-public/2017/04/27/2b54dbee-2472-4815-bd0f-9832de06a829/ENCFF497BVQ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF644IHA bigWig bigWig signal of unique reads ce10 ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF812DCO/ 10004340 Kevin White, UChicago e47509e9de2cc9055038c22ae2c2a89b https://www.encodeproject.org/files/ENCFF644IHA/@@download/ENCFF644IHA.bigWig released s3://encode-public/2017/04/29/2cf58438-1a16-4d57-90a4-546ab2a112ef/ENCFF644IHA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF035LOP bigWig bigWig read-depth normalized signal ce10 ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF812DCO/ 9996351 Kevin White, UChicago b4eca85ed80a314cbd82578010cc003d https://www.encodeproject.org/files/ENCFF035LOP/@@download/ENCFF035LOP.bigWig released s3://encode-public/2017/04/29/8a0ed968-05b6-4a64-a8fa-b2a085bb822b/ENCFF035LOP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF761ZIA bigWig bigWig read-depth normalized signal ce11 ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF497BVQ/ 9990200 Kevin White, UChicago 2df884b940541de82d96cb2ec2d28ebc https://www.encodeproject.org/files/ENCFF761ZIA/@@download/ENCFF761ZIA.bigWig released s3://encode-public/2017/04/29/f6adc179-9253-4123-9333-6a73b0902a7b/ENCFF761ZIA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF775DIM bigWig bigWig signal of unique reads ce11 ENCSR812NDR Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF497BVQ/ 10011125 Kevin White, UChicago d462e00ff684e5c0bd0adb1d59d3e794 https://www.encodeproject.org/files/ENCFF775DIM/@@download/ENCFF775DIM.bigWig released s3://encode-public/2017/04/29/693c5738-a89c-409a-b503-e7f5143466d3/ENCFF775DIM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF525BIZ fastq fastq reads ENCSR388OQM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 3747600738 Richard Myers, HAIB fac1e5c3d2b548761d0d9e73fb036b2a SRA:SRR14107226 https://www.encodeproject.org/files/ENCFF525BIZ/@@download/ENCFF525BIZ.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/07/31/4df11b4e-0639-442a-9720-a479aaf80f06/ENCFF525BIZ.fastq.gz ENCFF201JTK bam bam unfiltered alignments GRCh38 ENCSR388OQM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF525BIZ/ 3363414154 ENCODE Processing Pipeline 84200fb34a16177c820a5d38d454b46f https://www.encodeproject.org/files/ENCFF201JTK/@@download/ENCFF201JTK.bam released s3://encode-public/2020/04/20/d347be53-c1d6-43d8-9444-ee05748256d0/ENCFF201JTK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF814XWA bam bam alignments GRCh38 ENCSR388OQM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF525BIZ/ 2019772111 ENCODE Processing Pipeline 2bcff008b83c139b689805838204103b https://www.encodeproject.org/files/ENCFF814XWA/@@download/ENCFF814XWA.bam released s3://encode-public/2020/04/20/fc7a6ff1-a119-4b0d-8ebb-da3b4444b74e/ENCFF814XWA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF524PEN fastq fastq reads ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 312190381 Michael Snyder, Stanford b04e8c8d125c9f3fef175d24ef953821 https://www.encodeproject.org/files/ENCFF524PEN/@@download/ENCFF524PEN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/3bbe26cf-c49e-4626-af11-c45e68357c8d/ENCFF524PEN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF122OGH fastq fastq reads ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 258183672 Michael Snyder, Stanford 72228b80a05018f4d76b92beefef3899 https://www.encodeproject.org/files/ENCFF122OGH/@@download/ENCFF122OGH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/9913f705-c58b-4c0a-96b6-c420b569ade2/ENCFF122OGH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF144SJB bam bam alignments ce10 ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF122OGH/, /files/ENCFF524PEN/, /files/ENCFF987UMF/ 734878570 Kevin White, UChicago f906fbc4f3a79c37eb730b997764ed95 https://www.encodeproject.org/files/ENCFF144SJB/@@download/ENCFF144SJB.bam released s3://encode-public/2016/10/18/29414dad-fff1-4768-811a-bc9c3192c952/ENCFF144SJB.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF096FYY bam bam alignments ce11 ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF122OGH/, /files/ENCFF524PEN/, /files/ENCFF586MOL/ 735603759 Kevin White, UChicago 8cea9ec02a7b8b29a2d49ebe80b0478c https://www.encodeproject.org/files/ENCFF096FYY/@@download/ENCFF096FYY.bam released s3://encode-public/2016/10/19/4b246417-a6ae-43bf-912a-d83036d3d09f/ENCFF096FYY.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF649BKN bigWig bigWig read-depth normalized signal ce10 ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF144SJB/ 10004493 Kevin White, UChicago 5dbc2ccb252f4ab92ff16bc25d758611 https://www.encodeproject.org/files/ENCFF649BKN/@@download/ENCFF649BKN.bigWig released s3://encode-public/2016/10/20/615cd7df-616b-42ca-b702-f6ba3690d8e4/ENCFF649BKN.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF236PME bigWig bigWig signal of unique reads ce10 ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF144SJB/ 9995506 Kevin White, UChicago d6f0ac96819a1e75d432599d6e2e027f https://www.encodeproject.org/files/ENCFF236PME/@@download/ENCFF236PME.bigWig released s3://encode-public/2016/10/20/044205b2-e4e2-43a1-8610-69ad65d3be5e/ENCFF236PME.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF742RXH bigWig bigWig signal of unique reads ce11 ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF096FYY/ 9990272 Kevin White, UChicago 1fe216664fe63e6d3b86c7538ff1ffba https://www.encodeproject.org/files/ENCFF742RXH/@@download/ENCFF742RXH.bigWig released s3://encode-public/2016/10/21/e06911a5-2377-4fc2-854f-52e34ca9e79f/ENCFF742RXH.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF747TTC bigWig bigWig read-depth normalized signal ce11 ENCSR389KDY Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF096FYY/ 9998414 Kevin White, UChicago 7bc6cca9933d573fdc0d14e2659d123f https://www.encodeproject.org/files/ENCFF747TTC/@@download/ENCFF747TTC.bigWig released s3://encode-public/2016/10/21/7d832f42-fcb3-4ce6-9717-16e6e33f18d2/ENCFF747TTC.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF843TAS fastq fastq reads ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF136QKF/ 2728536341 Michael Snyder, Stanford d91ecc6cf3a3bfbe548b42103906cf8c SRA:SRR6213071 https://www.encodeproject.org/files/ENCFF843TAS/@@download/ENCFF843TAS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/03/e20ffc57-68d2-4fe1-8d20-117d18fb9119/ENCFF843TAS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF136QKF fastq fastq reads ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF843TAS/ 3391893892 Michael Snyder, Stanford b4a8a2085f176ed008877421a5a807fb SRA:SRR6213071 https://www.encodeproject.org/files/ENCFF136QKF/@@download/ENCFF136QKF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/03/4e27fbc4-9633-48d8-a5c4-32c308799166/ENCFF136QKF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF550SXD bam bam alignments hg19 ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF843TAS/, /files/ENCFF807MUK/, /files/ENCFF136QKF/ 3909919740 ENCODE Processing Pipeline 9e6b52284047d32ccbb6c5c239e26703 https://www.encodeproject.org/files/ENCFF550SXD/@@download/ENCFF550SXD.bam released s3://encode-public/2017/02/07/3ba2a70f-e580-4598-be35-c59e6887daf5/ENCFF550SXD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF788IDQ bam bam alignments GRCh38 ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF843TAS/, /files/ENCFF643CGH/, /files/ENCFF136QKF/ 3916204799 ENCODE Processing Pipeline 1a1967a0c6b754ac86eb6268fa03db9f https://www.encodeproject.org/files/ENCFF788IDQ/@@download/ENCFF788IDQ.bam released s3://encode-public/2017/02/07/6a094eb3-752c-4013-9596-6dbcc028411f/ENCFF788IDQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF332ZUG bam bam unfiltered alignments hg19 ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF843TAS/, /files/ENCFF807MUK/, /files/ENCFF136QKF/ 5726970025 ENCODE Processing Pipeline 58014633207352d012075d245f37b97e https://www.encodeproject.org/files/ENCFF332ZUG/@@download/ENCFF332ZUG.bam released s3://encode-public/2017/02/07/902bcfb3-a18b-412f-8b1e-b41be582edb9/ENCFF332ZUG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF535OAY bam bam unfiltered alignments GRCh38 ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF843TAS/, /files/ENCFF643CGH/, /files/ENCFF136QKF/ 5733415079 ENCODE Processing Pipeline cfd68bdd11a5b9e0ada8bd9ba0bf89ab https://www.encodeproject.org/files/ENCFF535OAY/@@download/ENCFF535OAY.bam released s3://encode-public/2017/02/07/b42f79ae-40a2-47b4-a794-d64110f84ede/ENCFF535OAY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF249MVX bam bam alignments GRCh38 ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF843TAS/, /files/ENCFF136QKF/ 3883332883 ENCODE Processing Pipeline 5a9eb7b172c1682193dec53725b04646 https://www.encodeproject.org/files/ENCFF249MVX/@@download/ENCFF249MVX.bam released s3://encode-public/2020/06/02/31ab607b-f3f5-4631-a1c3-d80ea7333844/ENCFF249MVX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF076ITT bam bam unfiltered alignments GRCh38 ENCSR405DOJ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF843TAS/, /files/ENCFF136QKF/ 5738174928 ENCODE Processing Pipeline 1ddfee42f8b2e1bec6ee891faf0af173 https://www.encodeproject.org/files/ENCFF076ITT/@@download/ENCFF076ITT.bam released s3://encode-public/2020/06/02/2f8eb95f-c18a-4d75-8913-f27867098ae6/ENCFF076ITT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF532YDR fastq fastq reads ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 187133981 Michael Snyder, Stanford 46dd949fce1a3d21f8964f8098b9f1f7 https://www.encodeproject.org/files/ENCFF532YDR/@@download/ENCFF532YDR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/014f61eb-1e96-4b47-8586-0f3bb6e88c39/ENCFF532YDR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF178IDW fastq fastq reads ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 170833111 Michael Snyder, Stanford 63676150fc24aa717a7ec41c358394be https://www.encodeproject.org/files/ENCFF178IDW/@@download/ENCFF178IDW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/3b722d6f-3f4c-4625-a0af-4bf06cd9f3a9/ENCFF178IDW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF371AJS bam bam alignments ce10 ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF532YDR/, /files/ENCFF178IDW/, /files/ENCFF987UMF/ 435468273 Kevin White, UChicago ff03c8c2ca5ff6cb855ad8863a0315cb https://www.encodeproject.org/files/ENCFF371AJS/@@download/ENCFF371AJS.bam released s3://encode-public/2016/10/18/63342bf8-fdbd-4bd1-8620-04d73f6c708b/ENCFF371AJS.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF447LMV bam bam alignments ce11 ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF532YDR/, /files/ENCFF178IDW/, /files/ENCFF586MOL/ 435900614 Kevin White, UChicago 6f511225d0c42a1c53b27748ea540d70 https://www.encodeproject.org/files/ENCFF447LMV/@@download/ENCFF447LMV.bam released s3://encode-public/2016/10/18/ea3d7e51-9191-4571-b26b-d08c7d88b9b5/ENCFF447LMV.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF916ZPP bigWig bigWig read-depth normalized signal ce10 ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF371AJS/ 9961817 Kevin White, UChicago 64980196d4c620b0e2f2f547e6371b5f https://www.encodeproject.org/files/ENCFF916ZPP/@@download/ENCFF916ZPP.bigWig released s3://encode-public/2016/10/20/91bbd8bf-1d67-4690-97ce-e5d87cbd15f3/ENCFF916ZPP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF616JKP bigWig bigWig signal of unique reads ce10 ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF371AJS/ 10019958 Kevin White, UChicago 84a441b54aca496e438d468b15d5ab6c https://www.encodeproject.org/files/ENCFF616JKP/@@download/ENCFF616JKP.bigWig released s3://encode-public/2016/10/20/52132712-c1cd-4962-a385-1bb2e3298f28/ENCFF616JKP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF786IVS bigWig bigWig read-depth normalized signal ce11 ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF447LMV/ 9958096 Kevin White, UChicago be17bd38aa68812465e5867a66a18d7d https://www.encodeproject.org/files/ENCFF786IVS/@@download/ENCFF786IVS.bigWig released s3://encode-public/2016/10/21/40041cc0-06ac-481a-a2a6-6a75c2e19109/ENCFF786IVS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF299YRU bigWig bigWig signal of unique reads ce11 ENCSR569PKU Control ChIP-seq /worm-donors/ENCDO928RXR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176844/'], '@type': ['Target', 'Item'], 'name': 'R02D3.7-celegans', 'label': 'R02D3.7', '@id': '/targets/R02D3.7-celegans/', 'title': 'R02D3.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfa26296-0260-4c78-84d1-e38bb8b46160', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF447LMV/ 10020078 Kevin White, UChicago a6215c0caa23b0db6fbdff5dc13ff465 https://www.encodeproject.org/files/ENCFF299YRU/@@download/ENCFF299YRU.bigWig released s3://encode-public/2016/10/21/02f46688-f8ac-447b-929e-1eafe4fb8345/ENCFF299YRU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF932SXR tagAlign tagAlign alignments hg19 ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF487VQV/ 207214994 Anshul Kundaje, Stanford 53f8f45190c08ca5238421f37400fca7 https://www.encodeproject.org/files/ENCFF932SXR/@@download/ENCFF932SXR.tagAlign.gz archived s3://encode-public/2016/03/30/6e053f4b-a4fa-4719-b5e1-6834b56605f7/ENCFF932SXR.tagAlign.gz Lab custom hg19 archived low read length ENCFF487VQV fastq fastq reads ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1850352174 Zhiping Weng, UMass c82e3cc12d631506db6461b2661b0eb4 SRA:SRR179699 https://www.encodeproject.org/files/ENCFF487VQV/@@download/ENCFF487VQV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/11/17/3c467b18-65bd-4214-a162-39fce1c82c7a/ENCFF487VQV.fastq.gz low read length ENCFF568TAP bam bam unfiltered alignments GRCh38 ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF487VQV/ 2173772324 ENCODE Processing Pipeline 078f59dc4b596fdaef772cfc7c96231f https://www.encodeproject.org/files/ENCFF568TAP/@@download/ENCFF568TAP.bam released s3://encode-public/2016/12/19/6ec382ae-609a-473a-85c6-11ca5d2febc4/ENCFF568TAP.bam ENCODE3 GRCh38 archived low read length ENCFF255BZQ bam bam unfiltered alignments hg19 ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF487VQV/ 2162314323 ENCODE Processing Pipeline e88961bcc17ee101fc53ece8486f9db4 https://www.encodeproject.org/files/ENCFF255BZQ/@@download/ENCFF255BZQ.bam released s3://encode-public/2016/12/19/cce867fc-9b90-4188-ba2f-a760a3101095/ENCFF255BZQ.bam ENCODE3 hg19 archived low read length ENCFF734TEC bam bam alignments GRCh38 ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF487VQV/ 1059118846 ENCODE Processing Pipeline 6c15b3c7ca798d2c911723dc5b26f550 https://www.encodeproject.org/files/ENCFF734TEC/@@download/ENCFF734TEC.bam released s3://encode-public/2016/12/19/b8215ec1-72d8-4b45-a75c-c9cf3b83acd7/ENCFF734TEC.bam ENCODE3 GRCh38 archived low read length ENCFF788BCG bam bam alignments hg19 ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF487VQV/ 1059524323 ENCODE Processing Pipeline bbf551b81bdf7e233a1fc2b5e037480c https://www.encodeproject.org/files/ENCFF788BCG/@@download/ENCFF788BCG.bam released s3://encode-public/2016/12/19/9c971dfc-7c28-4b88-a04f-7771a48cba4a/ENCFF788BCG.bam ENCODE3 hg19 archived low read length ENCFF199QIE bam bam alignments GRCh38 ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF487VQV/ 1186737102 ENCODE Processing Pipeline 70e8e8dc57db9520ddd47aaac85c1714 https://www.encodeproject.org/files/ENCFF199QIE/@@download/ENCFF199QIE.bam released s3://encode-public/2020/11/13/999134f8-36e6-4a27-b149-0fc8a99d5de8/ENCFF199QIE.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF388XHQ bam bam unfiltered alignments GRCh38 ENCSR174MHI Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF487VQV/ 2156284012 ENCODE Processing Pipeline dd436c200d7b1b74b3e327408e56ca34 https://www.encodeproject.org/files/ENCFF388XHQ/@@download/ENCFF388XHQ.bam released s3://encode-public/2020/11/13/d88e1a3a-cec9-4d0a-bd15-dca1095b6d95/ENCFF388XHQ.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF000NGD bigWig bigWig raw signal hg19 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 14217334 Richard Myers, HAIB f01b68d9d682337a68b91480da2d11ef https://www.encodeproject.org/files/ENCFF000NGD/@@download/ENCFF000NGD.bigWig archived s3://encode-public/2012/01/23/b7823a9b-5983-4ce5-8209-47bf4d7c116e/ENCFF000NGD.bigWig Lab custom hg19 archived low read length ENCFF000NGE bam bam alignments hg19 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGH/ 2414648556 Richard Myers, HAIB 5ad689ae2f526964156804fb542af68c https://www.encodeproject.org/files/ENCFF000NGE/@@download/ENCFF000NGE.bam archived s3://encode-public/2012/01/23/00d0d09b-646e-4fde-b656-b2e10d5eef6e/ENCFF000NGE.bam Lab custom hg19 archived low read length ENCFF000NGH fastq fastq reads ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 single-ended 2386815961 Richard Myers, HAIB b243acdc1e58d9cf3ecebb7b653d99ef https://www.encodeproject.org/files/ENCFF000NGH/@@download/ENCFF000NGH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/1e716a71-6565-4ab8-97ef-134cba833bf1/ENCFF000NGH.fastq.gz low read length ENCFF287ELX bam bam unfiltered alignments GRCh38 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGH/, /files/ENCFF643CGH/ 2642266797 ENCODE Processing Pipeline 276f4274f99c49d837c2dee75d4326e6 https://www.encodeproject.org/files/ENCFF287ELX/@@download/ENCFF287ELX.bam released s3://encode-public/2016/10/26/a96bb522-740c-46df-b503-438393396190/ENCFF287ELX.bam ENCODE3 GRCh38 archived low read length ENCFF656HEF bam bam alignments GRCh38 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGH/, /files/ENCFF643CGH/ 1688533430 ENCODE Processing Pipeline 66f14be5d288cae85b54eb4273e349fc https://www.encodeproject.org/files/ENCFF656HEF/@@download/ENCFF656HEF.bam released s3://encode-public/2016/10/26/9b65a89b-f4f2-4388-94ae-53d2a874a199/ENCFF656HEF.bam ENCODE3 GRCh38 archived low read length ENCFF688QIG bam bam unfiltered alignments hg19 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGH/, /files/ENCFF807MUK/ 2632981363 ENCODE Processing Pipeline c5e5077543c3d871613c2d9c7db6ad9d https://www.encodeproject.org/files/ENCFF688QIG/@@download/ENCFF688QIG.bam released s3://encode-public/2016/11/13/770a9399-f88d-4e3d-a368-80f7ec62b69b/ENCFF688QIG.bam ENCODE3 hg19 archived low read length ENCFF864UEQ bam bam alignments hg19 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF000NGH/, /files/ENCFF807MUK/ 1688231379 ENCODE Processing Pipeline 92a3357a3ef67af1ac06121e4361c5cf https://www.encodeproject.org/files/ENCFF864UEQ/@@download/ENCFF864UEQ.bam released s3://encode-public/2016/11/13/cb66405b-67a2-413f-93f6-5a830bca9ea9/ENCFF864UEQ.bam ENCODE3 hg19 archived low read length ENCFF510TYV bam bam alignments GRCh38 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NGH/ 1837640659 ENCODE Processing Pipeline ae814efe883616a7bb7779c9a14950f0 https://www.encodeproject.org/files/ENCFF510TYV/@@download/ENCFF510TYV.bam released s3://encode-public/2020/10/28/b6174408-4258-4b5b-9969-a1efd3e10a6c/ENCFF510TYV.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF478XLR bam bam unfiltered alignments GRCh38 ENCSR000BPD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour DNA 2012-02-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000NGH/ 2580562797 ENCODE Processing Pipeline b2b94cc386c16dbe5634c0881326d704 https://www.encodeproject.org/files/ENCFF478XLR/@@download/ENCFF478XLR.bam released s3://encode-public/2020/10/28/f4f52031-f788-4756-b808-078376c1b60b/ENCFF478XLR.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF543VIL fastq fastq reads ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 90089200 Michael Snyder, Stanford 0f963424656c92ab01b08d86265a9ae6 https://www.encodeproject.org/files/ENCFF543VIL/@@download/ENCFF543VIL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/66297ca4-cb42-4cca-8504-7748758ddd82/ENCFF543VIL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF355YGE fastq fastq reads ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 108986736 Michael Snyder, Stanford e0dc985af2d75e56315cd92100a34628 https://www.encodeproject.org/files/ENCFF355YGE/@@download/ENCFF355YGE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/f3121f68-e93c-4693-841b-268578290998/ENCFF355YGE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF284PVY bam bam alignments ce10 ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF355YGE/, /files/ENCFF543VIL/, /files/ENCFF987UMF/ 264868650 Kevin White, UChicago efcc9cc5a96b5b608e4e78816cffe6e6 https://www.encodeproject.org/files/ENCFF284PVY/@@download/ENCFF284PVY.bam released s3://encode-public/2017/04/27/76d93559-d6d7-496f-a883-430adb511c17/ENCFF284PVY.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF988RDS bam bam alignments ce11 ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF355YGE/, /files/ENCFF543VIL/, /files/ENCFF586MOL/ 265161111 Kevin White, UChicago 402646f37b3f913f3c5f4e0ad147d627 https://www.encodeproject.org/files/ENCFF988RDS/@@download/ENCFF988RDS.bam released s3://encode-public/2017/04/27/269a1799-9d35-45d2-8641-f26f49d441fc/ENCFF988RDS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF667YFD bigWig bigWig signal of unique reads ce10 ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF284PVY/ 10080920 Kevin White, UChicago ab7ef51077e49a8c17a8d14c78a271a7 https://www.encodeproject.org/files/ENCFF667YFD/@@download/ENCFF667YFD.bigWig released s3://encode-public/2017/04/29/065c5c9f-ee06-4b06-bdfa-fb08d40b5ceb/ENCFF667YFD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF020CLA bigWig bigWig read-depth normalized signal ce10 ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF284PVY/ 10067377 Kevin White, UChicago d25982f22ce534af4650be306ed0d33a https://www.encodeproject.org/files/ENCFF020CLA/@@download/ENCFF020CLA.bigWig released s3://encode-public/2017/04/29/5e3c4db0-a4d5-4106-a9c7-9c0c470eab2f/ENCFF020CLA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF235XSZ bigWig bigWig read-depth normalized signal ce11 ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF988RDS/ 10066167 Kevin White, UChicago 3bb54e7a0616ea62b5cddf1684a2ed86 https://www.encodeproject.org/files/ENCFF235XSZ/@@download/ENCFF235XSZ.bigWig released s3://encode-public/2017/04/29/09847fbd-629f-4cbc-b19b-6e847b87ac38/ENCFF235XSZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF424DPK bigWig bigWig signal of unique reads ce11 ENCSR017JSX Control ChIP-seq /worm-donors/ENCDO426ALQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191618/'], '@type': ['Target', 'Item'], 'name': 'ceh-16-celegans', 'label': 'ceh-16', '@id': '/targets/ceh-16-celegans/', 'title': 'ceh-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0229e45d-44a3-40e5-a793-0b10dbee9a37', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF988RDS/ 10078888 Kevin White, UChicago 465133048e836243237e1673d74f958c https://www.encodeproject.org/files/ENCFF424DPK/@@download/ENCFF424DPK.bigWig released s3://encode-public/2017/04/29/c18cd2c4-acc4-4a90-825c-140218c626e1/ENCFF424DPK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF761FST tagAlign tagAlign alignments hg19 ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF317PIV/ 147022581 Anshul Kundaje, Stanford d75ac7255dcfb936e323b10e70995c10 https://www.encodeproject.org/files/ENCFF761FST/@@download/ENCFF761FST.tagAlign.gz archived s3://encode-public/2016/05/02/14edff95-a1e3-461b-b633-a4cad96ccfa8/ENCFF761FST.tagAlign.gz Lab custom hg19 archived low read length inconsistent ontology term ENCFF317PIV fastq fastq reads ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1096220328 Zhiping Weng, UMass a7a0c2ae5a05ef32d4cd73b2f8499a89 SRA:SRR316171 https://www.encodeproject.org/files/ENCFF317PIV/@@download/ENCFF317PIV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/19/ecb7848b-c83b-4ac6-8993-153c8462eec3/ENCFF317PIV.fastq.gz low read length inconsistent ontology term ENCFF611CUK bam bam unfiltered alignments hg19 ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF317PIV/ 1385741455 ENCODE Processing Pipeline a1486d5370cf10f131a5cdfa5630cb29 https://www.encodeproject.org/files/ENCFF611CUK/@@download/ENCFF611CUK.bam released s3://encode-public/2016/12/19/5449e87e-df02-415a-9db5-69ff025fb64f/ENCFF611CUK.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF242FYY bam bam unfiltered alignments GRCh38 ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF317PIV/ 1393064168 ENCODE Processing Pipeline eb7a2fed0cf1e125574f70598d9c3d82 https://www.encodeproject.org/files/ENCFF242FYY/@@download/ENCFF242FYY.bam released s3://encode-public/2016/12/19/d3d85a9e-f011-4942-888c-7c153ddfd799/ENCFF242FYY.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF089AIV bam bam alignments GRCh38 ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF317PIV/ 874334370 ENCODE Processing Pipeline 6304bade463ca23c5bd86cbe9658a8e6 https://www.encodeproject.org/files/ENCFF089AIV/@@download/ENCFF089AIV.bam released s3://encode-public/2016/12/19/13e0f6ec-4c1b-486b-96a2-ab42b4a50d56/ENCFF089AIV.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF766MZR bam bam alignments hg19 ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF317PIV/ 874511659 ENCODE Processing Pipeline 80b708b5bb00a68d94d1d4bc3301aded https://www.encodeproject.org/files/ENCFF766MZR/@@download/ENCFF766MZR.bam released s3://encode-public/2016/12/19/c2a845c8-176a-48f7-8ef1-483209e1dc12/ENCFF766MZR.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF193CAL bam bam unfiltered alignments GRCh38 ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF317PIV/ 1346562431 ENCODE Processing Pipeline 1270bd735007e91933b6e802f7198f32 https://www.encodeproject.org/files/ENCFF193CAL/@@download/ENCFF193CAL.bam released s3://encode-public/2020/10/08/dfe95aac-9856-41a0-9d52-e98ff34c969d/ENCFF193CAL.bam ENCODE4 v1.5.1 GRCh38 released low read length inconsistent ontology term ENCFF477XTP bam bam alignments GRCh38 ENCSR843OBM Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF317PIV/ 963279994 ENCODE Processing Pipeline 959eabb007f74a65502dfa91388613ec https://www.encodeproject.org/files/ENCFF477XTP/@@download/ENCFF477XTP.bam released s3://encode-public/2020/10/08/0e756179-c3a1-466b-a523-a9d3722e4e87/ENCFF477XTP.bam ENCODE4 v1.5.1 GRCh38 released low read length inconsistent ontology term ENCFF588GEI fastq fastq reads ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 175439492 Michael Snyder, Stanford 4436bc7862e4f16de7a4b71c8789c0c4 https://www.encodeproject.org/files/ENCFF588GEI/@@download/ENCFF588GEI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/5d1bb72a-c1c0-444c-a07e-2909479f631f/ENCFF588GEI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF095TZS fastq fastq reads ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 174118396 Michael Snyder, Stanford ceea99429222f08637c47f27afea0c7f https://www.encodeproject.org/files/ENCFF095TZS/@@download/ENCFF095TZS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/47ea313b-3413-47cc-a775-ae40e134d7f9/ENCFF095TZS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF003NGE bam bam alignments ce10 ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF588GEI/, /files/ENCFF095TZS/, /files/ENCFF987UMF/ 361963695 Kevin White, UChicago 751647f946eef4e77d725373ee21f9f4 https://www.encodeproject.org/files/ENCFF003NGE/@@download/ENCFF003NGE.bam released s3://encode-public/2016/10/18/8babf6aa-774c-4c2f-aa9b-6e54b5327c4d/ENCFF003NGE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF947IKK bam bam alignments ce11 ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF588GEI/, /files/ENCFF095TZS/, /files/ENCFF586MOL/ 362250358 Kevin White, UChicago 44bf2dc99dae563dcd6c9e0f0817bf91 https://www.encodeproject.org/files/ENCFF947IKK/@@download/ENCFF947IKK.bam released s3://encode-public/2016/10/19/56b7364f-35ff-461a-9313-30f3f8d9e92c/ENCFF947IKK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF228RFO bigWig bigWig signal of unique reads ce10 ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF003NGE/ 10004857 Kevin White, UChicago 9c032252780a49927dc6310b6fa0161a https://www.encodeproject.org/files/ENCFF228RFO/@@download/ENCFF228RFO.bigWig released s3://encode-public/2016/10/20/3031c5f5-78f7-4842-bf48-77658e3e5114/ENCFF228RFO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF815ECQ bigWig bigWig read-depth normalized signal ce10 ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF003NGE/ 10052230 Kevin White, UChicago 7d6b8e07c2c09941e57305d796f2a9cd https://www.encodeproject.org/files/ENCFF815ECQ/@@download/ENCFF815ECQ.bigWig released s3://encode-public/2016/10/20/1d1fe7a2-0396-444e-995a-16cd6282c182/ENCFF815ECQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF469HYO bigWig bigWig signal of unique reads ce11 ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF947IKK/ 9997517 Kevin White, UChicago 5224446aa431ef1f189f6be9f087425d https://www.encodeproject.org/files/ENCFF469HYO/@@download/ENCFF469HYO.bigWig released s3://encode-public/2016/10/21/3217ac35-a5c4-424d-954e-20f7bcf2ab38/ENCFF469HYO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF490YYA bigWig bigWig read-depth normalized signal ce11 ENCSR280HHQ Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF947IKK/ 10043532 Kevin White, UChicago 07cca30853083b7f83c57ece74e6d948 https://www.encodeproject.org/files/ENCFF490YYA/@@download/ENCFF490YYA.bigWig released s3://encode-public/2016/10/21/9d63c2d6-cfb9-4935-8de1-663a06f24a5c/ENCFF490YYA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF301MDC bam bam unfiltered alignments hg19 ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF211RBV/, /files/ENCFF807MUK/, /files/ENCFF345KIN/ 8005108142 ENCODE Processing Pipeline 3c6b4e9091246660b35d7c396d44d878 https://www.encodeproject.org/files/ENCFF301MDC/@@download/ENCFF301MDC.bam released s3://encode-public/2018/02/21/36f48407-a6ff-4dfc-a390-54c929ef0161/ENCFF301MDC.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF345KIN fastq fastq reads ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF211RBV/ 3615534024 Michael Snyder, Stanford f0565e5c3b96436405672f35b2465646 SRA:SRR5111999 https://www.encodeproject.org/files/ENCFF345KIN/@@download/ENCFF345KIN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/417d48fe-d734-4884-b334-bc7185c67484/ENCFF345KIN.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF211RBV fastq fastq reads ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF345KIN/ 3798184569 Michael Snyder, Stanford 0ddb2395bb953ec056707dfe9451a581 SRA:SRR5111999 https://www.encodeproject.org/files/ENCFF211RBV/@@download/ENCFF211RBV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/e5df4e43-f03f-49aa-bdd5-ce0aff951b30/ENCFF211RBV.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF500EQZ bam bam alignments hg19 ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF211RBV/, /files/ENCFF807MUK/, /files/ENCFF345KIN/ 6183258991 ENCODE Processing Pipeline 07a533132d58e9501ef54914bc46c8aa https://www.encodeproject.org/files/ENCFF500EQZ/@@download/ENCFF500EQZ.bam released s3://encode-public/2015/12/09/17835112-7e39-4c4c-9339-46b54e60caff/ENCFF500EQZ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF330VDK bam bam unfiltered alignments GRCh38 ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF211RBV/, /files/ENCFF643CGH/, /files/ENCFF345KIN/ 8016918093 ENCODE Processing Pipeline aa257c53b54fb0be561b7d1024986309 https://www.encodeproject.org/files/ENCFF330VDK/@@download/ENCFF330VDK.bam released s3://encode-public/2016/05/06/31063189-95c3-4800-98b2-b2536ec6c4a1/ENCFF330VDK.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF547QCM bam bam alignments GRCh38 ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF211RBV/, /files/ENCFF643CGH/, /files/ENCFF345KIN/ 6191010595 ENCODE Processing Pipeline 3832caf84e33bea18cbdf95c93150c66 https://www.encodeproject.org/files/ENCFF547QCM/@@download/ENCFF547QCM.bam released s3://encode-public/2016/05/06/9620e4e7-5304-4ce2-9087-dc4a1dcc7ae8/ENCFF547QCM.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF928IBO bam bam unfiltered alignments GRCh38 ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF345KIN/, /files/ENCFF211RBV/ 8041740549 ENCODE Processing Pipeline 6f43cf1c650e2501a31f78fafa4e4253 https://www.encodeproject.org/files/ENCFF928IBO/@@download/ENCFF928IBO.bam released s3://encode-public/2020/06/13/193c278a-60f5-4bfc-ab0e-d1a6b83ec16f/ENCFF928IBO.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF821LOR bam bam alignments GRCh38 ENCSR727UQK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-67'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4097/'], '@type': ['Target', 'Item'], 'name': 'MAFG-human', 'label': 'MAFG', '@id': '/targets/MAFG-human/', 'title': 'MAFG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e0b08f34-01f4-4392-952b-8676fb07138a', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF345KIN/, /files/ENCFF211RBV/ 6165003334 ENCODE Processing Pipeline d3e9bef553a66ac842a59ae72903d365 https://www.encodeproject.org/files/ENCFF821LOR/@@download/ENCFF821LOR.bam released s3://encode-public/2020/06/13/ebce1b61-4b7e-4bc6-92ae-9ace34fbc751/ENCFF821LOR.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF919RAK fastq fastq reads ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 210313722 Michael Snyder, Stanford f976fdc6ff43c321bc5182459adc80c5 https://www.encodeproject.org/files/ENCFF919RAK/@@download/ENCFF919RAK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/ad096f97-1748-4ac1-a4d0-89d25acf2bce/ENCFF919RAK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF269SVE fastq fastq reads ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 184432321 Michael Snyder, Stanford e4bacf690e608ec02999234d4e334359 https://www.encodeproject.org/files/ENCFF269SVE/@@download/ENCFF269SVE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/b323f8ce-4f83-445b-a0cb-7c81969d88aa/ENCFF269SVE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF906TMV bam bam alignments ce10 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF269SVE/, /files/ENCFF919RAK/, /files/ENCFF987UMF/ 231119375 Kevin White, UChicago 36784c25211429ab2a697b119b247c3b https://www.encodeproject.org/files/ENCFF906TMV/@@download/ENCFF906TMV.bam archived s3://encode-public/2017/04/27/563c4143-b1f5-4e26-ac77-da3d17ad82e3/ENCFF906TMV.bam missing genetic modification characterization, missing biosample characterization ENCFF043FTU bam bam alignments ce11 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF269SVE/, /files/ENCFF919RAK/, /files/ENCFF586MOL/ 231334403 Kevin White, UChicago 8e0fecfab0997bcceaaae411764f2973 https://www.encodeproject.org/files/ENCFF043FTU/@@download/ENCFF043FTU.bam archived s3://encode-public/2017/04/27/4370b58e-54cc-4a15-9d12-f7dafa1be2b2/ENCFF043FTU.bam missing genetic modification characterization, missing biosample characterization ENCFF454CFO bigWig bigWig read-depth normalized signal ce10 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF354FBW/ 9999342 Kevin White, UChicago d4fb5e2618d123b202f2f98cc4d7dc24 https://www.encodeproject.org/files/ENCFF454CFO/@@download/ENCFF454CFO.bigWig released s3://encode-public/2017/04/29/9c3cbc35-4467-4e55-9eae-909550d58ac6/ENCFF454CFO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF935KBB bigWig bigWig signal of unique reads ce10 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF354FBW/ 10001032 Kevin White, UChicago 2cd55e0ae5423d05c352e59b9725312f https://www.encodeproject.org/files/ENCFF935KBB/@@download/ENCFF935KBB.bigWig released s3://encode-public/2017/04/29/e4028a9b-5d4e-4cb8-9a40-9df505e631d6/ENCFF935KBB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF871IEY bigWig bigWig read-depth normalized signal ce11 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF043FTU/ 9993097 Kevin White, UChicago c096b6e148c74e0de3074e597215e6f1 https://www.encodeproject.org/files/ENCFF871IEY/@@download/ENCFF871IEY.bigWig archived s3://encode-public/2017/04/29/8feaf2b4-23ea-4931-8e28-8e0c62c7bf2c/ENCFF871IEY.bigWig missing genetic modification characterization, missing biosample characterization ENCFF790UUY bigWig bigWig signal of unique reads ce11 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF043FTU/ 10001892 Kevin White, UChicago e27c9b35e508251e6810115b47ff385d https://www.encodeproject.org/files/ENCFF790UUY/@@download/ENCFF790UUY.bigWig archived s3://encode-public/2017/04/29/cd6b0f5b-1af3-4cfa-949d-c593ee6a367b/ENCFF790UUY.bigWig missing genetic modification characterization, missing biosample characterization ENCFF354FBW bam bam alignments ce10 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF269SVE/, /files/ENCFF919RAK/, /files/ENCFF987UMF/ 501444146 Kevin White, UChicago 4f0c0ff3b0bc3475daac1896040638fb https://www.encodeproject.org/files/ENCFF354FBW/@@download/ENCFF354FBW.bam released s3://encode-public/2017/11/13/7447e20d-74a7-491d-a3f4-919a701e8fde/ENCFF354FBW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF661YUQ bam bam alignments ce11 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF269SVE/, /files/ENCFF919RAK/, /files/ENCFF586MOL/ 501919242 Kevin White, UChicago 730451abdf081102a9e665895f117021 https://www.encodeproject.org/files/ENCFF661YUQ/@@download/ENCFF661YUQ.bam released s3://encode-public/2017/11/13/283d075a-1484-4093-a020-70e660d5afb9/ENCFF661YUQ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF721ALC bigWig bigWig read-depth normalized signal ce11 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF661YUQ/ 9998186 Kevin White, UChicago 2bc6266950726b0950b592e615d2b825 https://www.encodeproject.org/files/ENCFF721ALC/@@download/ENCFF721ALC.bigWig released s3://encode-public/2017/11/13/41f18aef-a3dd-46db-a9cb-0b2d1378ac29/ENCFF721ALC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF844FVH bigWig bigWig signal of unique reads ce11 ENCSR898AMG Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF661YUQ/ 10002497 Kevin White, UChicago f2c80a84fbb71c36a8461e5768381ff7 https://www.encodeproject.org/files/ENCFF844FVH/@@download/ENCFF844FVH.bigWig released s3://encode-public/2017/11/13/39bae536-483e-4f2d-9ce5-3744b3dfb3cc/ENCFF844FVH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF375LNJ fastq fastq reads ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 86021280 Michael Snyder, Stanford a28fc4cd5afb0cb539a06b2ba1d0f9e1 https://www.encodeproject.org/files/ENCFF375LNJ/@@download/ENCFF375LNJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bf2c0d0b-e73d-4f2d-ac5f-8394db541223/ENCFF375LNJ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF619CEV fastq fastq reads ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 143500579 Michael Snyder, Stanford bd5c5d247503f2aec9dfe471a3c04c5e https://www.encodeproject.org/files/ENCFF619CEV/@@download/ENCFF619CEV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/de86da92-82ec-4966-8c9e-18ce2f5ff244/ENCFF619CEV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF648OMF fastq fastq reads ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 110401358 Michael Snyder, Stanford 7897c73a9ecf7bff0bc63042390a6984 https://www.encodeproject.org/files/ENCFF648OMF/@@download/ENCFF648OMF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/12b9f0a2-babc-4c5a-b62c-4693a40576ab/ENCFF648OMF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF992GCG fastq fastq reads ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 193897325 Michael Snyder, Stanford 41cc886d914fa0ef344469fe795221de https://www.encodeproject.org/files/ENCFF992GCG/@@download/ENCFF992GCG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/9c424c34-419a-4944-8f66-734ed5e9ea24/ENCFF992GCG.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF451UDO bam bam alignments ce10 ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF375LNJ/, /files/ENCFF992GCG/, /files/ENCFF619CEV/, /files/ENCFF987UMF/ 619010087 Kevin White, UChicago 001d00ba9a064e6ade30076e136f13f0 https://www.encodeproject.org/files/ENCFF451UDO/@@download/ENCFF451UDO.bam released s3://encode-public/2017/04/27/b56ec95e-3928-4a66-bfeb-f1c8ddc5bf16/ENCFF451UDO.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF804EEI bam bam alignments ce11 ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF375LNJ/, /files/ENCFF992GCG/, /files/ENCFF619CEV/, /files/ENCFF586MOL/ 619552237 Kevin White, UChicago 4b757d7870a0b30daeb9989f63585b51 https://www.encodeproject.org/files/ENCFF804EEI/@@download/ENCFF804EEI.bam released s3://encode-public/2017/04/27/b26ef433-2a51-4832-9eaf-55c8a34ac6b4/ENCFF804EEI.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF432LUF bigWig bigWig signal of unique reads ce10 ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF451UDO/ 10034879 Kevin White, UChicago d424c71020ab640348956cc9ff33a687 https://www.encodeproject.org/files/ENCFF432LUF/@@download/ENCFF432LUF.bigWig released s3://encode-public/2017/04/29/c00e16c6-450a-4e5d-bf56-2a6fdbc06e0a/ENCFF432LUF.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF393ZMG bigWig bigWig read-depth normalized signal ce10 ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF451UDO/ 9993560 Kevin White, UChicago 849a9a7d50629f2ca0faa9d74e8bec40 https://www.encodeproject.org/files/ENCFF393ZMG/@@download/ENCFF393ZMG.bigWig released s3://encode-public/2017/04/29/4a00caf5-05a7-4c9d-9c03-98af26417782/ENCFF393ZMG.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF145HWX bigWig bigWig signal of unique reads ce11 ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF804EEI/ 10031848 Kevin White, UChicago b2d95cdf1f8b7cf21b0cc291cd92079d https://www.encodeproject.org/files/ENCFF145HWX/@@download/ENCFF145HWX.bigWig released s3://encode-public/2017/04/29/7b999117-bafa-467f-8db6-3efcb7d89223/ENCFF145HWX.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF414UEQ bigWig bigWig read-depth normalized signal ce11 ENCSR841ZAM Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF804EEI/ 9987878 Kevin White, UChicago ec70f5b6affe1a848b0804dc3a360ebd https://www.encodeproject.org/files/ENCFF414UEQ/@@download/ENCFF414UEQ.bigWig released s3://encode-public/2017/04/29/15e03dca-6985-4689-9cd9-e1f6e3b16e45/ENCFF414UEQ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF372TNC fastq fastq reads ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 286336011 Michael Snyder, Stanford f24f89468f75cc49c558461f52819b2d https://www.encodeproject.org/files/ENCFF372TNC/@@download/ENCFF372TNC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/29f4ff25-e355-4627-9e6f-342d52588cfa/ENCFF372TNC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF728ZJV fastq fastq reads ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 264154894 Michael Snyder, Stanford 48f6dd87070b6a4c77e0609bd4802702 https://www.encodeproject.org/files/ENCFF728ZJV/@@download/ENCFF728ZJV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/1439cc75-c579-4e44-9666-3ce60a697c85/ENCFF728ZJV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF007TID bam bam alignments ce10 ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF728ZJV/, /files/ENCFF372TNC/, /files/ENCFF987UMF/ 720179507 Kevin White, UChicago 822c012a9947f27baa36bc092784aebe https://www.encodeproject.org/files/ENCFF007TID/@@download/ENCFF007TID.bam released s3://encode-public/2017/04/27/777e030e-e8d5-45dc-8977-497d2eee146e/ENCFF007TID.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF241LDV bam bam alignments ce11 ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF728ZJV/, /files/ENCFF372TNC/, /files/ENCFF586MOL/ 720932348 Kevin White, UChicago 30ef83b87d5d4b08e699a032cbf3a6e5 https://www.encodeproject.org/files/ENCFF241LDV/@@download/ENCFF241LDV.bam released s3://encode-public/2017/04/28/4b889f5f-f655-4c95-b15f-33f822b13185/ENCFF241LDV.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF761XHC bigWig bigWig read-depth normalized signal ce10 ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF007TID/ 9996381 Kevin White, UChicago 4601d6f490db6cf0b962bcfdb13c8015 https://www.encodeproject.org/files/ENCFF761XHC/@@download/ENCFF761XHC.bigWig released s3://encode-public/2017/04/29/3a36ae1f-7076-48e1-a212-bef84cb59418/ENCFF761XHC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF094ZXK bigWig bigWig signal of unique reads ce10 ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF007TID/ 9995718 Kevin White, UChicago c93b838d57930ff9b7d97c5be40feb04 https://www.encodeproject.org/files/ENCFF094ZXK/@@download/ENCFF094ZXK.bigWig released s3://encode-public/2017/04/29/b99a5d03-fc86-4bbe-b5e2-31d4ed767e6c/ENCFF094ZXK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF872UGK bigWig bigWig signal of unique reads ce11 ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF241LDV/ 9986371 Kevin White, UChicago d3c09e54f37306c877ceab4d281851b8 https://www.encodeproject.org/files/ENCFF872UGK/@@download/ENCFF872UGK.bigWig released s3://encode-public/2017/04/29/fd41b054-62ea-4584-a3e2-7cd255885d49/ENCFF872UGK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF760IHX bigWig bigWig read-depth normalized signal ce11 ENCSR840BQX Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF241LDV/ 9986948 Kevin White, UChicago 30f27dd8733e58bdc85e474b7d114a6f https://www.encodeproject.org/files/ENCFF760IHX/@@download/ENCFF760IHX.bigWig released s3://encode-public/2017/04/29/ef6a4f50-ecb8-4aa4-8432-772910158798/ENCFF760IHX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF611LYX fastq fastq reads ENCSR020AAP Control ChIP-seq /fly-donors/ENCDO044MEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37155/'], '@type': ['Target', 'Item'], 'name': 'CG15073-dmelanogaster', 'label': 'CG15073', '@id': '/targets/CG15073-dmelanogaster/', 'title': 'CG15073 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '411ae190-1ab2-473b-89c2-7ae70de91318', 'status': 'released'} dm3 2R 14582685 14604629 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 675000775 Kevin White, UChicago 17a180e231ec3ce8676cd5706bdcc626 https://www.encodeproject.org/files/ENCFF611LYX/@@download/ENCFF611LYX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/50b337ef-faf6-4cd8-823c-6a99dec080be/ENCFF611LYX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF459GJW bam bam alignments dm3 ENCSR020AAP Control ChIP-seq /fly-donors/ENCDO044MEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37155/'], '@type': ['Target', 'Item'], 'name': 'CG15073-dmelanogaster', 'label': 'CG15073', '@id': '/targets/CG15073-dmelanogaster/', 'title': 'CG15073 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '411ae190-1ab2-473b-89c2-7ae70de91318', 'status': 'released'} dm3 2R 14582685 14604629 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF611LYX/ 819886715 Kevin White, UChicago 9c8469c36d769676840ed47940602ef5 https://www.encodeproject.org/files/ENCFF459GJW/@@download/ENCFF459GJW.bam released s3://encode-public/2016/04/10/7c476250-0a0e-4f42-a484-16b5aafafc14/ENCFF459GJW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF383HTT bigWig bigWig signal of unique reads dm3 ENCSR020AAP Control ChIP-seq /fly-donors/ENCDO044MEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37155/'], '@type': ['Target', 'Item'], 'name': 'CG15073-dmelanogaster', 'label': 'CG15073', '@id': '/targets/CG15073-dmelanogaster/', 'title': 'CG15073 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '411ae190-1ab2-473b-89c2-7ae70de91318', 'status': 'released'} dm3 2R 14582685 14604629 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF459GJW/ 15302220 Kevin White, UChicago f365b76c4df6db3f30e8060f5d809593 https://www.encodeproject.org/files/ENCFF383HTT/@@download/ENCFF383HTT.bigWig released s3://encode-public/2016/04/11/35f89510-5f35-4f70-8210-1342e2013cf1/ENCFF383HTT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF704UUP bigWig bigWig read-depth normalized signal dm3 ENCSR020AAP Control ChIP-seq /fly-donors/ENCDO044MEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37155/'], '@type': ['Target', 'Item'], 'name': 'CG15073-dmelanogaster', 'label': 'CG15073', '@id': '/targets/CG15073-dmelanogaster/', 'title': 'CG15073 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '411ae190-1ab2-473b-89c2-7ae70de91318', 'status': 'released'} dm3 2R 14582685 14604629 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF459GJW/ 15347660 Kevin White, UChicago b4e99738c9efc186b9b872512238b30b https://www.encodeproject.org/files/ENCFF704UUP/@@download/ENCFF704UUP.bigWig released s3://encode-public/2016/04/11/07236200-7c44-4d9f-8aaa-7f93637cb192/ENCFF704UUP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF026GWE bam bam alignments dm6 ENCSR020AAP Control ChIP-seq /fly-donors/ENCDO044MEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37155/'], '@type': ['Target', 'Item'], 'name': 'CG15073-dmelanogaster', 'label': 'CG15073', '@id': '/targets/CG15073-dmelanogaster/', 'title': 'CG15073 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '411ae190-1ab2-473b-89c2-7ae70de91318', 'status': 'released'} dm3 2R 14582685 14604629 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF611LYX/ 816224866 Kevin White, UChicago 6b4be711ff2e1c10ec4fd731e432f2d5 https://www.encodeproject.org/files/ENCFF026GWE/@@download/ENCFF026GWE.bam released s3://encode-public/2016/04/21/ed330087-1d15-4377-8675-516ed6567e34/ENCFF026GWE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF904FHU bigWig bigWig signal of unique reads dm6 ENCSR020AAP Control ChIP-seq /fly-donors/ENCDO044MEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37155/'], '@type': ['Target', 'Item'], 'name': 'CG15073-dmelanogaster', 'label': 'CG15073', '@id': '/targets/CG15073-dmelanogaster/', 'title': 'CG15073 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '411ae190-1ab2-473b-89c2-7ae70de91318', 'status': 'released'} dm3 2R 14582685 14604629 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF026GWE/ 17410269 Kevin White, UChicago fe6862195e3a1575aeeba777e337cc81 https://www.encodeproject.org/files/ENCFF904FHU/@@download/ENCFF904FHU.bigWig released s3://encode-public/2016/06/21/04238626-3878-492d-aa75-a50d7c34951b/ENCFF904FHU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF235CGS bigWig bigWig read-depth normalized signal dm6 ENCSR020AAP Control ChIP-seq /fly-donors/ENCDO044MEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37155/'], '@type': ['Target', 'Item'], 'name': 'CG15073-dmelanogaster', 'label': 'CG15073', '@id': '/targets/CG15073-dmelanogaster/', 'title': 'CG15073 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '411ae190-1ab2-473b-89c2-7ae70de91318', 'status': 'released'} dm3 2R 14582685 14604629 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF026GWE/ 17484245 Kevin White, UChicago 428e9d3c23e71bcca8645465f98ea313 https://www.encodeproject.org/files/ENCFF235CGS/@@download/ENCFF235CGS.bigWig released s3://encode-public/2016/06/21/0a0a21ff-8328-4331-b47c-8cc32a3ad1a7/ENCFF235CGS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF000PBL bam bam alignments hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000PBW/ 1637776978 Richard Myers, HAIB 7f985c1718552a7a69a3588059120a0c https://www.encodeproject.org/files/ENCFF000PBL/@@download/ENCFF000PBL.bam archived s3://encode-public/2012/01/23/05308dac-961a-441f-8936-ae109c6da915/ENCFF000PBL.bam Lab custom hg19 archived ENCFF000PBM bam bam alignments hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000PBY/ 1654008037 Richard Myers, HAIB fb2459f815a996fa658321d6d226fb6b https://www.encodeproject.org/files/ENCFF000PBM/@@download/ENCFF000PBM.bam archived s3://encode-public/2012/01/23/c6ca330d-018c-45a3-8ddc-d58ebb90f576/ENCFF000PBM.bam Lab custom hg19 archived ENCFF000PBN bigWig bigWig raw signal hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 234708969 Richard Myers, HAIB dcf4db015f97697ee2d354ac70d0bf7c https://www.encodeproject.org/files/ENCFF000PBN/@@download/ENCFF000PBN.bigWig archived s3://encode-public/2012/01/23/9f38583d-1c55-4173-a3d5-3f78e5bb7260/ENCFF000PBN.bigWig Lab custom hg19 archived ENCFF000PBQ bigWig bigWig raw signal hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 252286072 Richard Myers, HAIB f39d13cb209677740fd06bb6c96d4eff https://www.encodeproject.org/files/ENCFF000PBQ/@@download/ENCFF000PBQ.bigWig archived s3://encode-public/2012/01/23/1812f5a7-4c43-42d0-899c-fc99449c243b/ENCFF000PBQ.bigWig Lab custom hg19 archived ENCFF000PBW fastq fastq reads ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 single-ended 1752900525 Richard Myers, HAIB 6516621c003180c72ab0f31c70aa3349 https://www.encodeproject.org/files/ENCFF000PBW/@@download/ENCFF000PBW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/191ee5e2-5fb0-4627-8174-f9dad40542df/ENCFF000PBW.fastq.gz ENCFF000PBY fastq fastq reads ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 single-ended 1737758808 Richard Myers, HAIB 429e73f6d46a3534eb744726c00cd2a9 https://www.encodeproject.org/files/ENCFF000PBY/@@download/ENCFF000PBY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2012/01/23/711280db-a639-4041-8a46-f12a5bf4f0ac/ENCFF000PBY.fastq.gz ENCFF252HWU bam bam unfiltered alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000PBW/ 1726729866 ENCODE Processing Pipeline 82ed13ca27e6c9f5cfabb981cdd3ee02 https://www.encodeproject.org/files/ENCFF252HWU/@@download/ENCFF252HWU.bam released s3://encode-public/2016/11/30/741b96fd-520e-4b97-aefb-95c5e0783ff0/ENCFF252HWU.bam ENCODE3 GRCh38 archived ENCFF491RYT bam bam unfiltered alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000PBY/, /files/ENCFF643CGH/ 1774436758 ENCODE Processing Pipeline cf37030b6962755570f05c14e693171f https://www.encodeproject.org/files/ENCFF491RYT/@@download/ENCFF491RYT.bam released s3://encode-public/2016/11/30/241e8946-010f-4fb2-837c-1516f40a37a3/ENCFF491RYT.bam ENCODE3 GRCh38 archived ENCFF212COR bam bam alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000PBY/, /files/ENCFF643CGH/ 1260920672 ENCODE Processing Pipeline ebc50fce25ac8a03d7e8675bc0ce1b1b https://www.encodeproject.org/files/ENCFF212COR/@@download/ENCFF212COR.bam released s3://encode-public/2016/11/30/3266e36c-d5c6-4724-a5cb-11a3ff14e268/ENCFF212COR.bam ENCODE3 GRCh38 archived ENCFF063AZH bam bam alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF000PBW/ 1138589980 ENCODE Processing Pipeline ab2c5fdf0709935559fbc11ee358d85f https://www.encodeproject.org/files/ENCFF063AZH/@@download/ENCFF063AZH.bam released s3://encode-public/2016/11/30/8afcc4d9-1642-47a5-b58d-6c8ab3da6a8a/ENCFF063AZH.bam ENCODE3 GRCh38 archived ENCFF340BCR bam bam unfiltered alignments hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000PBY/, /files/ENCFF807MUK/ 1772359293 ENCODE Processing Pipeline 00493b854b1d487e57e7fc55760c37cf https://www.encodeproject.org/files/ENCFF340BCR/@@download/ENCFF340BCR.bam released s3://encode-public/2016/12/06/d25b22b8-b479-4720-ba10-c9e2a46a67f1/ENCFF340BCR.bam ENCODE3 hg19 archived ENCFF622MSR bam bam alignments hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF000PBY/, /files/ENCFF807MUK/ 1260379275 ENCODE Processing Pipeline 70b0a065b9cd5f55c7a2a9c1c010f37e https://www.encodeproject.org/files/ENCFF622MSR/@@download/ENCFF622MSR.bam released s3://encode-public/2016/12/06/f5e72027-6980-450e-a0b2-f748cdbdeaaa/ENCFF622MSR.bam ENCODE3 hg19 archived ENCFF099DBE bam bam unfiltered alignments hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000PBW/ 1724944013 ENCODE Processing Pipeline a926dbbb2eb98ad450f0596c0df46926 https://www.encodeproject.org/files/ENCFF099DBE/@@download/ENCFF099DBE.bam released s3://encode-public/2016/12/06/026b0037-0301-4ba2-812a-489f98bf75ee/ENCFF099DBE.bam ENCODE3 hg19 archived ENCFF831FMU bam bam alignments hg19 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF000PBW/ 1138141308 ENCODE Processing Pipeline ab0f4468b85500c8b0a4fbd4bb2fed93 https://www.encodeproject.org/files/ENCFF831FMU/@@download/ENCFF831FMU.bam released s3://encode-public/2016/12/06/089c2ad6-d0d2-4ce3-9b88-bc17f67eaf4a/ENCFF831FMU.bam ENCODE3 hg19 archived ENCFF790YEB bam bam alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000PBW/, /files/ENCFF110MCL/ 1192893518 ENCODE Processing Pipeline 573c2b4bf20aba091bca451346857526 https://www.encodeproject.org/files/ENCFF790YEB/@@download/ENCFF790YEB.bam released s3://encode-public/2020/09/03/defee571-ad67-46fa-b3b0-658f59caaa0c/ENCFF790YEB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF761OIH bam bam unfiltered alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 1 1_1 50 /files/ENCFF000PBW/, /files/ENCFF110MCL/ 1708494635 ENCODE Processing Pipeline 6f8290d3ce6c51a6899f08c1302786f5 https://www.encodeproject.org/files/ENCFF761OIH/@@download/ENCFF761OIH.bam released s3://encode-public/2020/09/03/a90ef093-ea1e-410d-be96-396343f3e38b/ENCFF761OIH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF264PNB bam bam unfiltered alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF110MCL/, /files/ENCFF000PBY/ 1758238021 ENCODE Processing Pipeline c3c0f73f09c4d3405befba9e4917bde1 https://www.encodeproject.org/files/ENCFF264PNB/@@download/ENCFF264PNB.bam released s3://encode-public/2020/09/03/fced0d15-22b8-4efb-80ce-b2f5a6e284c1/ENCFF264PNB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF943ATG bam bam alignments GRCh38 ENCSR000BVT Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2012-09-10 ENCODE see document 2 2_1 50 /files/ENCFF110MCL/, /files/ENCFF000PBY/ 1317314220 ENCODE Processing Pipeline 44a231584ff9ab2141331563f91c1ba7 https://www.encodeproject.org/files/ENCFF943ATG/@@download/ENCFF943ATG.bam released s3://encode-public/2020/09/03/abf59a93-94a8-4ccc-84db-22590cfa36fe/ENCFF943ATG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF933AQG fastq fastq reads ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 613237860 Tim Reddy, Duke 1d1b337458b42e6d7e220dae0d6e6f47 SRA:SRR5093180 https://www.encodeproject.org/files/ENCFF933AQG/@@download/ENCFF933AQG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/f6d86ea4-4c04-47e7-9072-63432058f3ad/ENCFF933AQG.fastq.gz ENCFF983MUT fastq fastq reads ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 634556761 Tim Reddy, Duke cf5989e0a51ad7abe7f69b7bcc65b2f1 SRA:SRR5093179 https://www.encodeproject.org/files/ENCFF983MUT/@@download/ENCFF983MUT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/31e31b90-d80b-4d6a-bd75-f773c1c70375/ENCFF983MUT.fastq.gz ENCFF664SQT fastq fastq reads ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 588215494 Tim Reddy, Duke 416dfef9767ea54f0d113eea2b44571d SRA:SRR5093178 https://www.encodeproject.org/files/ENCFF664SQT/@@download/ENCFF664SQT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/7c620efd-106e-412d-b75b-a1d8d741590a/ENCFF664SQT.fastq.gz ENCFF458HLD bam bam alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF664SQT/ 648624828 Tim Reddy, Duke eb87fac939c702913b876eb771009c7c https://www.encodeproject.org/files/ENCFF458HLD/@@download/ENCFF458HLD.bam released s3://encode-public/2016/10/19/f1e56218-20e7-443a-ab3c-45825cbf34bd/ENCFF458HLD.bam Lab custom GRCh38 archived ENCFF969ZZQ bam bam alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF983MUT/ 709803669 Tim Reddy, Duke fb72b5a84d423322ff93a55e22b4eaa8 https://www.encodeproject.org/files/ENCFF969ZZQ/@@download/ENCFF969ZZQ.bam released s3://encode-public/2016/10/19/d89cb8f7-b25b-41c6-82c1-d62da9c67978/ENCFF969ZZQ.bam Lab custom GRCh38 archived ENCFF049LAK bam bam alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF933AQG/ 686517875 Tim Reddy, Duke c7f8cca05959219a25526f2361880c98 https://www.encodeproject.org/files/ENCFF049LAK/@@download/ENCFF049LAK.bam released s3://encode-public/2016/10/19/1b2007b4-ea6b-48fd-bd6b-056d9d51591a/ENCFF049LAK.bam Lab custom GRCh38 archived ENCFF763ECR bam bam unfiltered alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF983MUT/, /files/ENCFF110MCL/ 871133210 ENCODE Processing Pipeline f1f603ec0a3f2ad3cc1f5f33e74ac266 https://www.encodeproject.org/files/ENCFF763ECR/@@download/ENCFF763ECR.bam released s3://encode-public/2020/11/13/707c6368-66ba-4e6e-8de2-ce1b0cb1792a/ENCFF763ECR.bam ENCODE4 v1.6.1 GRCh38 released ENCFF436DTF bam bam unfiltered alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF664SQT/ 808836139 ENCODE Processing Pipeline c59e73a3987935b18a94e29e19c984c7 https://www.encodeproject.org/files/ENCFF436DTF/@@download/ENCFF436DTF.bam released s3://encode-public/2020/11/13/32b5d428-540e-4c1b-8e85-a741213da075/ENCFF436DTF.bam ENCODE4 v1.6.1 GRCh38 released ENCFF429NCU bam bam alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF983MUT/, /files/ENCFF110MCL/ 743905975 ENCODE Processing Pipeline 86a2c1d5a83615701c951cdc2e251047 https://www.encodeproject.org/files/ENCFF429NCU/@@download/ENCFF429NCU.bam released s3://encode-public/2020/11/13/33836ebc-c217-4695-81de-e4bd024cd22c/ENCFF429NCU.bam ENCODE4 v1.6.1 GRCh38 released ENCFF615XXB bam bam unfiltered alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF933AQG/, /files/ENCFF110MCL/ 837134589 ENCODE Processing Pipeline 88f370a046a817ed97e9630814f08d54 https://www.encodeproject.org/files/ENCFF615XXB/@@download/ENCFF615XXB.bam released s3://encode-public/2020/11/13/bf0da798-68ea-46b6-b74d-4c70d6ef87e1/ENCFF615XXB.bam ENCODE4 v1.6.1 GRCh38 released ENCFF020GZR bam bam alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF933AQG/, /files/ENCFF110MCL/ 716798832 ENCODE Processing Pipeline d0f233e5e46cb0eaf4500412f7012114 https://www.encodeproject.org/files/ENCFF020GZR/@@download/ENCFF020GZR.bam released s3://encode-public/2020/11/13/a8a3855c-dd2e-4983-9090-3e337353ade2/ENCFF020GZR.bam ENCODE4 v1.6.1 GRCh38 released ENCFF955YVH bam bam alignments GRCh38 ENCSR909GTY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF664SQT/ 677184135 ENCODE Processing Pipeline faefd3fe9071cb6f2735fe81c643c18c https://www.encodeproject.org/files/ENCFF955YVH/@@download/ENCFF955YVH.bam released s3://encode-public/2020/11/13/c4bb055e-1bac-4cf4-b6a0-491e7bc32988/ENCFF955YVH.bam ENCODE4 v1.6.1 GRCh38 released ENCFF909LUZ fastq fastq reads ENCSR559OGK Control ChIP-seq /fly-donors/ENCDO156ZRY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32536/'], '@type': ['Target', 'Item'], 'name': 'sd-dmelanogaster', 'label': 'sd', '@id': '/targets/sd-dmelanogaster/', 'title': 'sd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c0df282-f61c-402d-85d0-869b69501c21', 'status': 'released'} dm3 X 15799307 15836278 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 813496096 Kevin White, UChicago bd3dd2dc6fea1334821646348e19b322 https://www.encodeproject.org/files/ENCFF909LUZ/@@download/ENCFF909LUZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/23704256-2431-49e0-9b27-252585532592/ENCFF909LUZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF449HWC bam bam alignments dm6 ENCSR559OGK Control ChIP-seq /fly-donors/ENCDO156ZRY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32536/'], '@type': ['Target', 'Item'], 'name': 'sd-dmelanogaster', 'label': 'sd', '@id': '/targets/sd-dmelanogaster/', 'title': 'sd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c0df282-f61c-402d-85d0-869b69501c21', 'status': 'released'} dm3 X 15799307 15836278 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF909LUZ/, /files/ENCFF479RCH/ 1073599192 Kevin White, UChicago 3f9307461850684b766a508d9f1cd24b https://www.encodeproject.org/files/ENCFF449HWC/@@download/ENCFF449HWC.bam released s3://encode-public/2018/12/07/832f7ce1-9913-4149-91b2-1beee693abac/ENCFF449HWC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF488SBV bigWig bigWig read-depth normalized signal dm6 ENCSR559OGK Control ChIP-seq /fly-donors/ENCDO156ZRY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32536/'], '@type': ['Target', 'Item'], 'name': 'sd-dmelanogaster', 'label': 'sd', '@id': '/targets/sd-dmelanogaster/', 'title': 'sd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c0df282-f61c-402d-85d0-869b69501c21', 'status': 'released'} dm3 X 15799307 15836278 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF449HWC/ 17702442 Kevin White, UChicago 34186c488d8cfb9a221806f2cd1d9619 https://www.encodeproject.org/files/ENCFF488SBV/@@download/ENCFF488SBV.bigWig released s3://encode-public/2018/12/10/246c6db7-b687-41f9-a025-2e9f86351ee7/ENCFF488SBV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF812DMZ bigWig bigWig signal of unique reads dm6 ENCSR559OGK Control ChIP-seq /fly-donors/ENCDO156ZRY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32536/'], '@type': ['Target', 'Item'], 'name': 'sd-dmelanogaster', 'label': 'sd', '@id': '/targets/sd-dmelanogaster/', 'title': 'sd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c0df282-f61c-402d-85d0-869b69501c21', 'status': 'released'} dm3 X 15799307 15836278 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF449HWC/ 17676147 Kevin White, UChicago 56b073a393a70ad283dc985d81e2a549 https://www.encodeproject.org/files/ENCFF812DMZ/@@download/ENCFF812DMZ.bigWig released s3://encode-public/2018/12/10/4e23f6ba-165a-469e-8d13-1a3111cee69e/ENCFF812DMZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF056XEJ fastq fastq reads ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF007ATP/ 2831493220 Michael Snyder, Stanford e94aae163a637a3d6a18081806bffbd0 SRA:SRR6213893 https://www.encodeproject.org/files/ENCFF056XEJ/@@download/ENCFF056XEJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/3fc55d5f-d8e2-4725-9713-f07311dfefeb/ENCFF056XEJ.fastq.gz low read depth ENCFF007ATP fastq fastq reads ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF056XEJ/ 2776889070 Michael Snyder, Stanford 0718470e2cbdbaa5c0e530b8a16bb98c SRA:SRR6213893 https://www.encodeproject.org/files/ENCFF007ATP/@@download/ENCFF007ATP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/0bceb7cb-9a04-48ac-bc36-3d707d04cb0d/ENCFF007ATP.fastq.gz low read depth ENCFF175XXJ bam bam unfiltered alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 101 /files/ENCFF056XEJ/, /files/ENCFF643CGH/, /files/ENCFF007ATP/ 6306813508 ENCODE Processing Pipeline 44a59fc40dd85ed8e7fb0638aeca6b89 https://www.encodeproject.org/files/ENCFF175XXJ/@@download/ENCFF175XXJ.bam released s3://encode-public/2017/02/02/ba522330-2436-4346-bc11-d9bcd5300b4d/ENCFF175XXJ.bam ENCODE3 GRCh38 archived low read depth ENCFF980IJT bam bam alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 101 /files/ENCFF056XEJ/, /files/ENCFF643CGH/, /files/ENCFF007ATP/ 3403899041 ENCODE Processing Pipeline a71c6617039614c5594776c50fecc6a9 https://www.encodeproject.org/files/ENCFF980IJT/@@download/ENCFF980IJT.bam released s3://encode-public/2017/02/02/28353864-b041-421d-a91d-b8b3f70df57f/ENCFF980IJT.bam ENCODE3 GRCh38 archived low read depth ENCFF677RFY bam bam unfiltered alignments hg19 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 101 /files/ENCFF056XEJ/, /files/ENCFF807MUK/, /files/ENCFF007ATP/ 6277692762 ENCODE Processing Pipeline f0817e26f73e57e24dbe88e0f9f602f5 https://www.encodeproject.org/files/ENCFF677RFY/@@download/ENCFF677RFY.bam released s3://encode-public/2017/02/03/5a285dc3-2d2d-4e15-99fd-0304d21c8416/ENCFF677RFY.bam ENCODE3 hg19 archived low read depth ENCFF923EBC bam bam alignments hg19 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 101 /files/ENCFF056XEJ/, /files/ENCFF807MUK/, /files/ENCFF007ATP/ 3402246218 ENCODE Processing Pipeline 0e4a71ad9754ff465fe8a187fef38d11 https://www.encodeproject.org/files/ENCFF923EBC/@@download/ENCFF923EBC.bam released s3://encode-public/2017/02/03/bd8608b2-90b5-4a2d-8ff4-d522dc3274df/ENCFF923EBC.bam ENCODE3 hg19 archived low read depth ENCFF928OBE fastq fastq reads ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF619MWU/ 2399791876 Michael Snyder, Stanford 59da28fb5e97edec1dd79c3240de3784 SRA:SRR6213894 https://www.encodeproject.org/files/ENCFF928OBE/@@download/ENCFF928OBE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/29955a8c-50e4-4c94-8e9d-33148b14c887/ENCFF928OBE.fastq.gz low read depth ENCFF619MWU fastq fastq reads ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF928OBE/ 2517302553 Michael Snyder, Stanford 7bf3a7d9fa2342ff07a8c535cf0c2446 SRA:SRR6213894 https://www.encodeproject.org/files/ENCFF619MWU/@@download/ENCFF619MWU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/ac660436-2d35-479a-92ae-dc8cceaf6d29/ENCFF619MWU.fastq.gz low read depth ENCFF244UGL bam bam alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 101 /files/ENCFF928OBE/, /files/ENCFF619MWU/, /files/ENCFF643CGH/ 4541916999 ENCODE Processing Pipeline 4e5a3ee25774b778bb65a47612767ce6 https://www.encodeproject.org/files/ENCFF244UGL/@@download/ENCFF244UGL.bam released s3://encode-public/2017/02/02/3794ceaa-796c-408d-9daa-dc3377be5676/ENCFF244UGL.bam ENCODE3 GRCh38 archived low read depth ENCFF090ARS bam bam unfiltered alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 101 /files/ENCFF928OBE/, /files/ENCFF619MWU/, /files/ENCFF643CGH/ 5563132595 ENCODE Processing Pipeline 31d0c695253d238d015a237f26de2be5 https://www.encodeproject.org/files/ENCFF090ARS/@@download/ENCFF090ARS.bam released s3://encode-public/2017/02/02/0c5b970c-1804-4608-b052-3d7fe20c4c22/ENCFF090ARS.bam ENCODE3 GRCh38 archived low read depth ENCFF801WHL bam bam alignments hg19 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 101 /files/ENCFF928OBE/, /files/ENCFF807MUK/, /files/ENCFF619MWU/ 4537505509 ENCODE Processing Pipeline f2e13d76680a7363ef87baf8f2deb6d8 https://www.encodeproject.org/files/ENCFF801WHL/@@download/ENCFF801WHL.bam released s3://encode-public/2017/02/03/8fea1bf6-1143-4ebc-a43c-011b9658e0d7/ENCFF801WHL.bam ENCODE3 hg19 archived low read depth ENCFF904ZLN bam bam unfiltered alignments hg19 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 101 /files/ENCFF928OBE/, /files/ENCFF807MUK/, /files/ENCFF619MWU/ 5545971417 ENCODE Processing Pipeline 9f2937c4b4c47e6ce2887852eb67383e https://www.encodeproject.org/files/ENCFF904ZLN/@@download/ENCFF904ZLN.bam released s3://encode-public/2017/02/03/94a68821-85f7-48d4-a675-0ee628503a9e/ENCFF904ZLN.bam ENCODE3 hg19 archived low read depth ENCFF358BGI bam bam alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF928OBE/, /files/ENCFF619MWU/ 4577003838 ENCODE Processing Pipeline 13a9bb150359e3212ef3fa9c19a99ad7 https://www.encodeproject.org/files/ENCFF358BGI/@@download/ENCFF358BGI.bam released s3://encode-public/2020/06/02/4e3f04a0-c050-4559-9ecf-5379eb6cf9e4/ENCFF358BGI.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF654XZT bam bam unfiltered alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF007ATP/, /files/ENCFF056XEJ/ 6361488413 ENCODE Processing Pipeline 5d32aaed665a734cbf9d130fa4e7300e https://www.encodeproject.org/files/ENCFF654XZT/@@download/ENCFF654XZT.bam released s3://encode-public/2020/06/02/c1013977-ab4d-4b8a-bf02-98eaa8721846/ENCFF654XZT.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF499KEN bam bam unfiltered alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF928OBE/, /files/ENCFF619MWU/ 5544712102 ENCODE Processing Pipeline 29480cfb900036f9de175f8c73b6664b https://www.encodeproject.org/files/ENCFF499KEN/@@download/ENCFF499KEN.bam released s3://encode-public/2020/06/02/3847a162-f11c-4693-a794-77afd4fde34e/ENCFF499KEN.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF629MMX bam bam alignments GRCh38 ENCSR585FQO Control ChIP-seq /human-donors/ENCDO000ACX/ EFO:0006365 C4-2B cell line Homo sapiens DNA 2017-02-02 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF007ATP/, /files/ENCFF056XEJ/ 3595047730 ENCODE Processing Pipeline b72383e3d74affb0879cde7894a8ca59 https://www.encodeproject.org/files/ENCFF629MMX/@@download/ENCFF629MMX.bam released s3://encode-public/2020/06/02/ff2f61bd-a794-4fd8-a115-58c9949b3e56/ENCFF629MMX.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF000CFI bam bam alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 453929981 Bradley Bernstein, Broad ad7ffabc42e8da918732649098e9ec82 https://www.encodeproject.org/files/ENCFF000CFI/@@download/ENCFF000CFI.bam archived s3://encode-public/2010/11/16/051f91a0-ffb4-4d70-8016-a0731d9a2178/ENCFF000CFI.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF000CFK bigWig bigWig signal hg19 ENCSR000AOP Control ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 851573172 Bradley Bernstein, Broad 0881db3209166b7ae7c7f8658c0f4069 https://www.encodeproject.org/files/ENCFF000CFK/@@download/ENCFF000CFK.bigWig archived s3://encode-public/2010/11/16/4b971c2b-1c6f-4824-80cb-174ded13a7f9/ENCFF000CFK.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF000CFO bam bam alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 2688260435 Bradley Bernstein, Broad 3f067fe5f12d8a535b53958f726725bf https://www.encodeproject.org/files/ENCFF000CFO/@@download/ENCFF000CFO.bam archived s3://encode-public/2010/11/16/2dee5933-3656-4506-9819-1af007bd2f7b/ENCFF000CFO.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF000CFR fastq fastq reads ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 36 single-ended 519339675 Bradley Bernstein, Broad e2e170da70e445ab3f0e5eba6ba0ffad https://www.encodeproject.org/files/ENCFF000CFR/@@download/ENCFF000CFR.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/707b9455-ba44-494e-b129-4c17249d96c6/ENCFF000CFR.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF000CFY fastq fastq reads ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 single-ended 2575102006 Bradley Bernstein, Broad a7ba3edad8ad6fef2450f76ecdc03167 https://www.encodeproject.org/files/ENCFF000CFY/@@download/ENCFF000CFY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2010/11/16/bc1cffae-3085-4837-8005-078e17b1d751/ENCFF000CFY.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF855ZXU tagAlign tagAlign alignments hg19 ENCSR000AOP Control ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 204235400 Anshul Kundaje, Stanford 4ff15944a8c10de5dddd3fa1b7ad5ac2 https://www.encodeproject.org/files/ENCFF855ZXU/@@download/ENCFF855ZXU.tagAlign.gz archived s3://encode-public/2016/07/19/99c01898-f486-4eff-a424-c9d2a54405c4/ENCFF855ZXU.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF615VUA fastq fastq reads ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 731880626 Bradley Bernstein, Broad b55b5cbeea3d1e7c4bf8df5127d78d27 https://www.encodeproject.org/files/ENCFF615VUA/@@download/ENCFF615VUA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/98363735-96ab-4765-b00e-cb29fc7c5b5e/ENCFF615VUA.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF765DJW fastq fastq reads ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 946146387 Bradley Bernstein, Broad 51de3083b7d23ec2d0c76a2982bed36f https://www.encodeproject.org/files/ENCFF765DJW/@@download/ENCFF765DJW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/dabe55ed-3abd-4d35-b4b8-9425f25776ca/ENCFF765DJW.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF631QCD fastq fastq reads ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 708669549 Bradley Bernstein, Broad 815ace9cc242239d6d4df4df9f9f4e7b https://www.encodeproject.org/files/ENCFF631QCD/@@download/ENCFF631QCD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/08690aaa-4927-425a-a444-b29263e8fbba/ENCFF631QCD.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF563PNW fastq fastq reads ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_2 36 single-ended 902251533 Bradley Bernstein, Broad 9b68f4df3060cb8131a318df932e208d https://www.encodeproject.org/files/ENCFF563PNW/@@download/ENCFF563PNW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/26/3b9ade44-7a28-4285-95ee-e0056fbe802b/ENCFF563PNW.fastq.gz mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF581QLB bam bam unfiltered alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF807MUK/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 2883934701 ENCODE Processing Pipeline 3a064a916d19d305a2f48afbb099a040 https://www.encodeproject.org/files/ENCFF581QLB/@@download/ENCFF581QLB.bam released s3://encode-public/2017/04/06/dbbcacde-d754-42cc-b9f3-9fb64169b47e/ENCFF581QLB.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF191SLR bam bam alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF807MUK/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 1834886576 ENCODE Processing Pipeline 749d570ae6647436803c69707dcf9e2f https://www.encodeproject.org/files/ENCFF191SLR/@@download/ENCFF191SLR.bam released s3://encode-public/2017/04/06/82e2774c-200e-4033-817a-51e6d3a813c8/ENCFF191SLR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF391KPN bam bam unfiltered alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF643CGH/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 2898617426 ENCODE Processing Pipeline 08b4e7fdbb97e1820e7d4c99bbd3525c https://www.encodeproject.org/files/ENCFF391KPN/@@download/ENCFF391KPN.bam released s3://encode-public/2017/04/06/3497c25e-91d8-463e-9238-b28d8fbac0ad/ENCFF391KPN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF639TYV bam bam alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF643CGH/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 1834343133 ENCODE Processing Pipeline 85927ff48b0262d5cabd1d11cf0b4ca1 https://www.encodeproject.org/files/ENCFF639TYV/@@download/ENCFF639TYV.bam released s3://encode-public/2017/04/06/f1ba46a1-d1bd-4e9f-8774-567b08ebaac5/ENCFF639TYV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF368JCF bam bam unfiltered alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/, /files/ENCFF643CGH/ 5565112580 ENCODE Processing Pipeline 38f74632c7934aaffeba6a16cb5535f9 https://www.encodeproject.org/files/ENCFF368JCF/@@download/ENCFF368JCF.bam released s3://encode-public/2017/04/06/13a42207-0912-42d6-bf2b-e3116eaa722e/ENCFF368JCF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF216TIF bam bam alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/, /files/ENCFF643CGH/ 3339673159 ENCODE Processing Pipeline 0c5fe59e99c849d53214bbe41e2af9c1 https://www.encodeproject.org/files/ENCFF216TIF/@@download/ENCFF216TIF.bam released s3://encode-public/2017/04/06/7ac18fc2-1acf-43b8-a21c-a09b69a70d7d/ENCFF216TIF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF169WZW bam bam unfiltered alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/ 5530613089 ENCODE Processing Pipeline 09b845b1c9b954ca8e30a8502989e887 https://www.encodeproject.org/files/ENCFF169WZW/@@download/ENCFF169WZW.bam released s3://encode-public/2017/04/06/786bf02d-eb22-4797-aa8e-25609ab20008/ENCFF169WZW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF350LQZ bam bam alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/ 3339962413 ENCODE Processing Pipeline 11694eb66b2d42c443fae1410d7a7e1b https://www.encodeproject.org/files/ENCFF350LQZ/@@download/ENCFF350LQZ.bam released s3://encode-public/2017/04/06/e3c16d63-9784-4169-918d-b33fe8fde4d3/ENCFF350LQZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF320HTD bam bam alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF807MUK/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 1834886579 ENCODE Processing Pipeline 3d4e3b407dfe7e3921d8658bb83ccdda https://www.encodeproject.org/files/ENCFF320HTD/@@download/ENCFF320HTD.bam released s3://encode-public/2020/02/05/dcc9b061-6c36-4008-87e4-5644396e609b/ENCFF320HTD.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF702SWA bam bam unfiltered alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF807MUK/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 2883934702 ENCODE Processing Pipeline 687fa68f399a1d9ca077dbfc87ef7ed2 https://www.encodeproject.org/files/ENCFF702SWA/@@download/ENCFF702SWA.bam released s3://encode-public/2020/02/05/fb36fc23-d21d-42c6-af63-f7624b6aaf2e/ENCFF702SWA.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF552NNY bam bam unfiltered alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/ 5530613091 ENCODE Processing Pipeline 2a42cbdc7abc2b35c9ad5ccbd62f5fbe https://www.encodeproject.org/files/ENCFF552NNY/@@download/ENCFF552NNY.bam released s3://encode-public/2020/02/05/895c22f1-3f83-4e14-a89a-74aa400ebde5/ENCFF552NNY.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF536UAK bam bam alignments hg19 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/ 3339962417 ENCODE Processing Pipeline 9e43dba367a8710257fcee756f3999c3 https://www.encodeproject.org/files/ENCFF536UAK/@@download/ENCFF536UAK.bam released s3://encode-public/2020/02/05/f98eb6de-a4a8-4f04-9fef-b1a27860e7a4/ENCFF536UAK.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF875INV bam bam unfiltered alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF643CGH/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 2898617429 ENCODE Processing Pipeline 16254cc1e01a413f4eaaa90d3b528f56 https://www.encodeproject.org/files/ENCFF875INV/@@download/ENCFF875INV.bam released s3://encode-public/2020/02/13/34a5bb2e-9ac0-497d-b8e3-e11961f53513/ENCFF875INV.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF257GZV bam bam alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF000CFR/, /files/ENCFF643CGH/, /files/ENCFF765DJW/, /files/ENCFF615VUA/ 1834343138 ENCODE Processing Pipeline bf9b088e9fb11353dc5667486460334f https://www.encodeproject.org/files/ENCFF257GZV/@@download/ENCFF257GZV.bam released s3://encode-public/2020/02/13/4ebf78f7-71be-42dc-b9dd-e489b5c3b286/ENCFF257GZV.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF268YRU bam bam alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/, /files/ENCFF643CGH/ 3339673163 ENCODE Processing Pipeline 45a57df346e04efcf4fb52f17bc771e4 https://www.encodeproject.org/files/ENCFF268YRU/@@download/ENCFF268YRU.bam released s3://encode-public/2020/02/13/116ba520-31c7-4a1a-bac6-636a24616bf4/ENCFF268YRU.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF662KRQ bam bam unfiltered alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF631QCD/, /files/ENCFF563PNW/, /files/ENCFF000CFY/, /files/ENCFF643CGH/ 5565112582 ENCODE Processing Pipeline acc98870f372275e15b1f2f2c4c8279a https://www.encodeproject.org/files/ENCFF662KRQ/@@download/ENCFF662KRQ.bam released s3://encode-public/2020/02/13/5d5fc14d-2d7e-44f3-bf9c-5e0fcd474008/ENCFF662KRQ.bam mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF437VJW bam bam unfiltered alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF765DJW/, /files/ENCFF110MCL/, /files/ENCFF000CFR/, /files/ENCFF615VUA/ 2833252671 ENCODE Processing Pipeline 14e3564c9c33e0d950fbbb41a50f7705 https://www.encodeproject.org/files/ENCFF437VJW/@@download/ENCFF437VJW.bam released s3://encode-public/2020/09/03/e8294d5e-2d36-428c-bef5-e6c8d9026db8/ENCFF437VJW.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF167VMP bam bam alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF631QCD/, /files/ENCFF110MCL/, /files/ENCFF000CFY/, /files/ENCFF563PNW/ 3612388390 ENCODE Processing Pipeline d174aca113516c0db9d7a8198096a73b https://www.encodeproject.org/files/ENCFF167VMP/@@download/ENCFF167VMP.bam released s3://encode-public/2020/09/03/4f9687cd-491d-4218-8ce5-b04bb2e26f46/ENCFF167VMP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF375WYU bam bam alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1, 2_2 36 /files/ENCFF765DJW/, /files/ENCFF110MCL/, /files/ENCFF000CFR/, /files/ENCFF615VUA/ 1990685914 ENCODE Processing Pipeline 122e9642778615bf3b4e1a35466885cd https://www.encodeproject.org/files/ENCFF375WYU/@@download/ENCFF375WYU.bam released s3://encode-public/2020/09/03/2e705524-067a-4b72-b837-86dccc37347d/ENCFF375WYU.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF836PZH bam bam unfiltered alignments GRCh38 ENCSR000AOP Control ChIP-seq /human-donors/ENCDO916IIE/ CL:0000127 astrocyte primary cell Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF631QCD/, /files/ENCFF110MCL/, /files/ENCFF000CFY/, /files/ENCFF563PNW/ 5445281174 ENCODE Processing Pipeline 0c368f10903d514f1a5f833b47c667b5 https://www.encodeproject.org/files/ENCFF836PZH/@@download/ENCFF836PZH.bam released s3://encode-public/2020/09/03/4d8f356f-25c5-45f8-867f-64f13c83e9f5/ENCFF836PZH.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length, inconsistent platforms ENCFF482PLU bam bam unfiltered alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF215IWI/, /files/ENCFF110MCL/ 873586389 ENCODE Processing Pipeline b9f024ab5b231c5b9d9e9bfcb4bc5005 https://www.encodeproject.org/files/ENCFF482PLU/@@download/ENCFF482PLU.bam released s3://encode-public/2020/09/29/8cd88f77-cd5e-4e84-8ba7-62e3c3a90352/ENCFF482PLU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF132NRG fastq fastq reads ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 803640333 Tim Reddy, Duke 18fc15fb362bb7a2d981c362814d357f SRA:SRR5129576 https://www.encodeproject.org/files/ENCFF132NRG/@@download/ENCFF132NRG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/91855e2e-952d-4fdb-8b0c-824eb6a07c2d/ENCFF132NRG.fastq.gz ENCFF803JFA fastq fastq reads ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 918804209 Tim Reddy, Duke e5f41d0f63f2b11fbf3eb419e02f47c6 SRA:SRR5129574 https://www.encodeproject.org/files/ENCFF803JFA/@@download/ENCFF803JFA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/c8f54fa5-e74c-4716-a6fb-d0baee825c97/ENCFF803JFA.fastq.gz ENCFF215IWI fastq fastq reads ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 640971767 Tim Reddy, Duke 9d509a725b44af75ffabee2b52f1286b SRA:SRR5129575 https://www.encodeproject.org/files/ENCFF215IWI/@@download/ENCFF215IWI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/a94f5ad5-7bf9-4482-a297-c03b870b3601/ENCFF215IWI.fastq.gz ENCFF346VSP bam bam alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF132NRG/ 877877414 Tim Reddy, Duke 5348627c1acbb3df4849d479c4d7f707 https://www.encodeproject.org/files/ENCFF346VSP/@@download/ENCFF346VSP.bam released s3://encode-public/2016/12/15/64c489a4-de5b-4950-87f7-b8ff22956030/ENCFF346VSP.bam Lab custom GRCh38 archived ENCFF376SOY bam bam alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF803JFA/ 999927165 Tim Reddy, Duke ec74ae68430caffa31d875553a31fb3d https://www.encodeproject.org/files/ENCFF376SOY/@@download/ENCFF376SOY.bam released s3://encode-public/2016/12/15/22a78ede-4018-41e2-b36f-316f6a588513/ENCFF376SOY.bam Lab custom GRCh38 archived ENCFF434AIC bam bam alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF215IWI/ 702020783 Tim Reddy, Duke 8ba0dce5939febc8d2415c8b30c0cbfe https://www.encodeproject.org/files/ENCFF434AIC/@@download/ENCFF434AIC.bam released s3://encode-public/2016/12/15/701d9977-7000-4499-8528-7b847c60477b/ENCFF434AIC.bam Lab custom GRCh38 archived ENCFF659OJR bam bam unfiltered alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF132NRG/ 1095088546 ENCODE Processing Pipeline f1a322b3ae2c6c65df5387276711b01e https://www.encodeproject.org/files/ENCFF659OJR/@@download/ENCFF659OJR.bam released s3://encode-public/2020/09/29/4a0975ef-19fb-49ac-a631-06d40dcc1c47/ENCFF659OJR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF821HZW bam bam unfiltered alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF803JFA/, /files/ENCFF110MCL/ 1245236665 ENCODE Processing Pipeline 636290c4cef885f0525478f11968cef9 https://www.encodeproject.org/files/ENCFF821HZW/@@download/ENCFF821HZW.bam released s3://encode-public/2020/09/29/cdccaf31-095e-427a-b092-4f96aafc4eea/ENCFF821HZW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF263TVI bam bam alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF132NRG/ 923021000 ENCODE Processing Pipeline 6947cf535dde6f5244a8379aa84da0a9 https://www.encodeproject.org/files/ENCFF263TVI/@@download/ENCFF263TVI.bam released s3://encode-public/2020/09/29/8ba3f04a-e685-4d12-b647-4a5a83d9528e/ENCFF263TVI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF938FUP bam bam alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF803JFA/, /files/ENCFF110MCL/ 1055643570 ENCODE Processing Pipeline e74e182e3ef5368f40f90e9d6fde79bc https://www.encodeproject.org/files/ENCFF938FUP/@@download/ENCFF938FUP.bam released s3://encode-public/2020/09/29/f4d61793-3cdf-4dea-addd-9982ebc788e3/ENCFF938FUP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF452EUS bam bam alignments GRCh38 ENCSR266YIS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF215IWI/, /files/ENCFF110MCL/ 741952990 ENCODE Processing Pipeline a630d9e3b330d9e3b7e0b8285adc0a7c https://www.encodeproject.org/files/ENCFF452EUS/@@download/ENCFF452EUS.bam released s3://encode-public/2020/09/29/c5825e70-e360-45bf-8fef-11b0c7f5a07f/ENCFF452EUS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF491IUM fastq fastq reads ENCSR346LCD Control ChIP-seq /fly-donors/ENCDO570YYV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41530/'], '@type': ['Target', 'Item'], 'name': 'CG5245-dmelanogaster', 'label': 'CG5245', '@id': '/targets/CG5245-dmelanogaster/', 'title': 'CG5245 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fba55d93-f8a0-4d5c-b09d-ec9efbce4171', 'status': 'released'} dm3 3R 8245029 8264077 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 741880164 Kevin White, UChicago 200b52871e54c488646cb6bafdf21389 https://www.encodeproject.org/files/ENCFF491IUM/@@download/ENCFF491IUM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/09/d8e6d72c-c128-420f-83de-6002af91aba9/ENCFF491IUM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF823KGP bam bam alignments dm3 ENCSR346LCD Control ChIP-seq /fly-donors/ENCDO570YYV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41530/'], '@type': ['Target', 'Item'], 'name': 'CG5245-dmelanogaster', 'label': 'CG5245', '@id': '/targets/CG5245-dmelanogaster/', 'title': 'CG5245 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fba55d93-f8a0-4d5c-b09d-ec9efbce4171', 'status': 'released'} dm3 3R 8245029 8264077 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF059UHX/, /files/ENCFF491IUM/ 896254156 Kevin White, UChicago d8ba9515be3a816a16bb4c6e4bac8ed9 https://www.encodeproject.org/files/ENCFF823KGP/@@download/ENCFF823KGP.bam released s3://encode-public/2016/04/10/52762e4d-b437-4109-ba65-4a96ae9085b4/ENCFF823KGP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF202BTC bigWig bigWig signal of unique reads dm3 ENCSR346LCD Control ChIP-seq /fly-donors/ENCDO570YYV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41530/'], '@type': ['Target', 'Item'], 'name': 'CG5245-dmelanogaster', 'label': 'CG5245', '@id': '/targets/CG5245-dmelanogaster/', 'title': 'CG5245 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fba55d93-f8a0-4d5c-b09d-ec9efbce4171', 'status': 'released'} dm3 3R 8245029 8264077 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF823KGP/ 15344255 Kevin White, UChicago 9d8c9b5a985228aa8bb72133ad5b0295 https://www.encodeproject.org/files/ENCFF202BTC/@@download/ENCFF202BTC.bigWig released s3://encode-public/2016/04/11/8c34b41e-623b-4a3e-ab9e-29d20e754667/ENCFF202BTC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF890VWN bigWig bigWig read-depth normalized signal dm3 ENCSR346LCD Control ChIP-seq /fly-donors/ENCDO570YYV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41530/'], '@type': ['Target', 'Item'], 'name': 'CG5245-dmelanogaster', 'label': 'CG5245', '@id': '/targets/CG5245-dmelanogaster/', 'title': 'CG5245 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fba55d93-f8a0-4d5c-b09d-ec9efbce4171', 'status': 'released'} dm3 3R 8245029 8264077 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF823KGP/ 15360896 Kevin White, UChicago 52f15d9eedc647f291d68153236244e6 https://www.encodeproject.org/files/ENCFF890VWN/@@download/ENCFF890VWN.bigWig released s3://encode-public/2016/04/11/321cf818-74ae-4b45-92be-734e3b8fed33/ENCFF890VWN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF429IIX bam bam alignments dm6 ENCSR346LCD Control ChIP-seq /fly-donors/ENCDO570YYV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41530/'], '@type': ['Target', 'Item'], 'name': 'CG5245-dmelanogaster', 'label': 'CG5245', '@id': '/targets/CG5245-dmelanogaster/', 'title': 'CG5245 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fba55d93-f8a0-4d5c-b09d-ec9efbce4171', 'status': 'released'} dm3 3R 8245029 8264077 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF479RCH/, /files/ENCFF491IUM/ 893390278 Kevin White, UChicago dfce25ecab8c4c3e41a36841cc2ece0e https://www.encodeproject.org/files/ENCFF429IIX/@@download/ENCFF429IIX.bam released s3://encode-public/2016/04/21/986d5374-b057-48cd-a0d7-534477b423fe/ENCFF429IIX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF383CNF bigWig bigWig signal of unique reads dm6 ENCSR346LCD Control ChIP-seq /fly-donors/ENCDO570YYV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41530/'], '@type': ['Target', 'Item'], 'name': 'CG5245-dmelanogaster', 'label': 'CG5245', '@id': '/targets/CG5245-dmelanogaster/', 'title': 'CG5245 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fba55d93-f8a0-4d5c-b09d-ec9efbce4171', 'status': 'released'} dm3 3R 8245029 8264077 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF429IIX/ 17400322 Kevin White, UChicago 5ee4cf08c1ac1922616f39396781e2b0 https://www.encodeproject.org/files/ENCFF383CNF/@@download/ENCFF383CNF.bigWig released s3://encode-public/2016/06/20/9e643a6c-9566-4ea5-a65e-d9d0534c81a0/ENCFF383CNF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF966WPE bigWig bigWig read-depth normalized signal dm6 ENCSR346LCD Control ChIP-seq /fly-donors/ENCDO570YYV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41530/'], '@type': ['Target', 'Item'], 'name': 'CG5245-dmelanogaster', 'label': 'CG5245', '@id': '/targets/CG5245-dmelanogaster/', 'title': 'CG5245 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fba55d93-f8a0-4d5c-b09d-ec9efbce4171', 'status': 'released'} dm3 3R 8245029 8264077 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF429IIX/ 17441270 Kevin White, UChicago def904c53ab9305bdb0aa647d0052e2b https://www.encodeproject.org/files/ENCFF966WPE/@@download/ENCFF966WPE.bigWig released s3://encode-public/2016/06/20/05614e08-0abc-48db-9d31-6d3e5da8be31/ENCFF966WPE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF868ZAG fastq fastq reads ENCSR557GAY Control ChIP-seq /fly-donors/ENCDO455OMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41165/'], '@type': ['Target', 'Item'], 'name': 'CG8319-dmelanogaster', 'label': 'CG8319', '@id': '/targets/CG8319-dmelanogaster/', 'title': 'CG8319 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '17c2bedb-0976-4b1a-b7dd-051f4cef3d5c', 'status': 'released'} dm3 3R 5448393 5466198 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 644221591 Kevin White, UChicago 11149dbffda0588515a434197ec8adc6 https://www.encodeproject.org/files/ENCFF868ZAG/@@download/ENCFF868ZAG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/9cab7828-c0a9-459b-a64e-d6781143a603/ENCFF868ZAG.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF861MEK bam bam alignments dm3 ENCSR557GAY Control ChIP-seq /fly-donors/ENCDO455OMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41165/'], '@type': ['Target', 'Item'], 'name': 'CG8319-dmelanogaster', 'label': 'CG8319', '@id': '/targets/CG8319-dmelanogaster/', 'title': 'CG8319 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '17c2bedb-0976-4b1a-b7dd-051f4cef3d5c', 'status': 'released'} dm3 3R 5448393 5466198 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF868ZAG/ 775336993 Kevin White, UChicago 429f6d6f11480d931789d9e7c1831426 https://www.encodeproject.org/files/ENCFF861MEK/@@download/ENCFF861MEK.bam released s3://encode-public/2016/04/10/83e1660d-5883-4e74-83f2-ef6a1356f279/ENCFF861MEK.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF980SMH bigWig bigWig signal of unique reads dm3 ENCSR557GAY Control ChIP-seq /fly-donors/ENCDO455OMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41165/'], '@type': ['Target', 'Item'], 'name': 'CG8319-dmelanogaster', 'label': 'CG8319', '@id': '/targets/CG8319-dmelanogaster/', 'title': 'CG8319 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '17c2bedb-0976-4b1a-b7dd-051f4cef3d5c', 'status': 'released'} dm3 3R 5448393 5466198 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF861MEK/ 15161445 Kevin White, UChicago 4ee739c8c0f476edc6c3150800044902 https://www.encodeproject.org/files/ENCFF980SMH/@@download/ENCFF980SMH.bigWig released s3://encode-public/2016/04/11/08d4287e-74b1-4ee1-ba18-13f6fdc9adf3/ENCFF980SMH.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF512FCB bigWig bigWig read-depth normalized signal dm3 ENCSR557GAY Control ChIP-seq /fly-donors/ENCDO455OMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41165/'], '@type': ['Target', 'Item'], 'name': 'CG8319-dmelanogaster', 'label': 'CG8319', '@id': '/targets/CG8319-dmelanogaster/', 'title': 'CG8319 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '17c2bedb-0976-4b1a-b7dd-051f4cef3d5c', 'status': 'released'} dm3 3R 5448393 5466198 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF861MEK/ 15184488 Kevin White, UChicago 3dfe7a0f35926095374ef69740a5c098 https://www.encodeproject.org/files/ENCFF512FCB/@@download/ENCFF512FCB.bigWig released s3://encode-public/2016/04/11/4ef458bc-5125-48ca-bc0b-c43f0f1a47fa/ENCFF512FCB.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF174KUM bam bam alignments dm6 ENCSR557GAY Control ChIP-seq /fly-donors/ENCDO455OMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41165/'], '@type': ['Target', 'Item'], 'name': 'CG8319-dmelanogaster', 'label': 'CG8319', '@id': '/targets/CG8319-dmelanogaster/', 'title': 'CG8319 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '17c2bedb-0976-4b1a-b7dd-051f4cef3d5c', 'status': 'released'} dm3 3R 5448393 5466198 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF868ZAG/ 771925764 Kevin White, UChicago 0dc6252ddda1e87f1226fad599e3e4c4 https://www.encodeproject.org/files/ENCFF174KUM/@@download/ENCFF174KUM.bam released s3://encode-public/2016/04/21/d6c35af2-95f6-43e0-af22-c313909f0561/ENCFF174KUM.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF246HGD bigWig bigWig signal of unique reads dm6 ENCSR557GAY Control ChIP-seq /fly-donors/ENCDO455OMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41165/'], '@type': ['Target', 'Item'], 'name': 'CG8319-dmelanogaster', 'label': 'CG8319', '@id': '/targets/CG8319-dmelanogaster/', 'title': 'CG8319 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '17c2bedb-0976-4b1a-b7dd-051f4cef3d5c', 'status': 'released'} dm3 3R 5448393 5466198 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF174KUM/ 17260619 Kevin White, UChicago ba33a2bb8f29f9eb01a748966f76384a https://www.encodeproject.org/files/ENCFF246HGD/@@download/ENCFF246HGD.bigWig released s3://encode-public/2016/06/21/5ddac110-158d-4093-9020-1167253573ba/ENCFF246HGD.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF098SWI bigWig bigWig read-depth normalized signal dm6 ENCSR557GAY Control ChIP-seq /fly-donors/ENCDO455OMT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41165/'], '@type': ['Target', 'Item'], 'name': 'CG8319-dmelanogaster', 'label': 'CG8319', '@id': '/targets/CG8319-dmelanogaster/', 'title': 'CG8319 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '17c2bedb-0976-4b1a-b7dd-051f4cef3d5c', 'status': 'released'} dm3 3R 5448393 5466198 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF174KUM/ 17287825 Kevin White, UChicago e16f9e0441e25f40156309b6aa900ef6 https://www.encodeproject.org/files/ENCFF098SWI/@@download/ENCFF098SWI.bigWig released s3://encode-public/2016/06/21/6a553ee0-d78e-4022-91e2-3ea08c8ec9e6/ENCFF098SWI.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF000POG bam bam alignments hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POO/ 744031784 Richard Myers, HAIB e93af697cc171467c3e920a8ac0138e7 https://www.encodeproject.org/files/ENCFF000POG/@@download/ENCFF000POG.bam archived s3://encode-public/2012/01/23/eb6fdd9b-05de-4310-ba5f-023292134871/ENCFF000POG.bam Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000POI bam bam alignments hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POQ/ 778811816 Richard Myers, HAIB 80546c326f17f6a44ad22c00ae66cbd4 https://www.encodeproject.org/files/ENCFF000POI/@@download/ENCFF000POI.bam archived s3://encode-public/2012/01/23/54202007-c43c-40e2-8a77-d6ef109dea34/ENCFF000POI.bam Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000POK bigWig bigWig raw signal hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36729015 Richard Myers, HAIB 2fb2cab4348640fd5e9fd3bb11768f14 https://www.encodeproject.org/files/ENCFF000POK/@@download/ENCFF000POK.bigWig archived s3://encode-public/2012/01/23/80e26fe2-42de-4a4f-b8a6-90023ea3845e/ENCFF000POK.bigWig Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000POL bigWig bigWig raw signal hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 56076426 Richard Myers, HAIB 6e17025ad8a0eb1dd5ee1e710579e534 https://www.encodeproject.org/files/ENCFF000POL/@@download/ENCFF000POL.bigWig archived s3://encode-public/2012/01/23/ee7035b9-535a-47f6-95d5-28619247b307/ENCFF000POL.bigWig Lab custom hg19 archived low read depth, low read length insufficient read depth ENCFF000POO fastq fastq reads ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 1202880211 Richard Myers, HAIB 8b76bdb0e6c58b60a680456399cab869 https://www.encodeproject.org/files/ENCFF000POO/@@download/ENCFF000POO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/3f9a44c6-fe69-4067-98ea-26e772647ae3/ENCFF000POO.fastq.gz low read depth, low read length insufficient read depth ENCFF000POQ fastq fastq reads ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 1312773144 Richard Myers, HAIB dcca541913d395d28c76490490a860ef https://www.encodeproject.org/files/ENCFF000POQ/@@download/ENCFF000POQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/237eac37-e938-4a6d-8ea1-e4f9ca28c0c1/ENCFF000POQ.fastq.gz low read depth, low read length insufficient read depth ENCFF726LCA bam bam unfiltered alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000POO/ 1533113161 ENCODE Processing Pipeline be21d86d8eb5f2079425e5733613c526 https://www.encodeproject.org/files/ENCFF726LCA/@@download/ENCFF726LCA.bam released s3://encode-public/2016/10/26/311fd928-b383-4e97-8e7c-2af175fdec20/ENCFF726LCA.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF236VIX bam bam unfiltered alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000POQ/ 1707043611 ENCODE Processing Pipeline e8b4f497efa546f0ea166e423b48e2e7 https://www.encodeproject.org/files/ENCFF236VIX/@@download/ENCFF236VIX.bam released s3://encode-public/2016/10/26/6368c157-4d0b-4f10-9b67-cbf9f4e76e8d/ENCFF236VIX.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF249PQD bam bam alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000POO/ 440228486 ENCODE Processing Pipeline e2410b6e0b4080cc8e6ea0079cac35a9 https://www.encodeproject.org/files/ENCFF249PQD/@@download/ENCFF249PQD.bam released s3://encode-public/2016/10/26/4103c9b2-c4ab-4fc7-9d33-8c226bd04c6d/ENCFF249PQD.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF741TQN bam bam alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000POQ/ 574206015 ENCODE Processing Pipeline 46e7f8d9c9281e9f701ffaecc61739b3 https://www.encodeproject.org/files/ENCFF741TQN/@@download/ENCFF741TQN.bam released s3://encode-public/2016/10/26/9a6ea827-e3a2-4c02-9425-6437a1ab5abd/ENCFF741TQN.bam ENCODE3 GRCh38 archived low read depth, low read length insufficient read depth ENCFF727CJO bam bam unfiltered alignments hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000POO/ 1530265701 ENCODE Processing Pipeline 2e3104a5cb236c094c3f597c7b7e0908 https://www.encodeproject.org/files/ENCFF727CJO/@@download/ENCFF727CJO.bam released s3://encode-public/2016/11/13/f03a4a01-e424-45ae-a577-ec5686a895e5/ENCFF727CJO.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF625XTK bam bam unfiltered alignments hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000POQ/ 1702894158 ENCODE Processing Pipeline 54c9de64dee191d737b47d01f194f227 https://www.encodeproject.org/files/ENCFF625XTK/@@download/ENCFF625XTK.bam released s3://encode-public/2016/11/13/1bbe8aa3-0da1-48c7-9416-81317a511312/ENCFF625XTK.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF292YHA bam bam alignments hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000POO/ 440611338 ENCODE Processing Pipeline 6e60741a23aa96a7fa687599af235de1 https://www.encodeproject.org/files/ENCFF292YHA/@@download/ENCFF292YHA.bam released s3://encode-public/2016/11/13/92d497d8-836f-43cb-8917-b8ee2319edbb/ENCFF292YHA.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF782VTV bam bam alignments hg19 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000POQ/ 574564777 ENCODE Processing Pipeline 2c4f68d9693ae075464a2709a4d93647 https://www.encodeproject.org/files/ENCFF782VTV/@@download/ENCFF782VTV.bam released s3://encode-public/2016/11/13/81f1e68a-6000-4dae-9193-10fd90cca72f/ENCFF782VTV.bam ENCODE3 hg19 archived low read depth, low read length insufficient read depth ENCFF293TQJ bam bam alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POO/, /files/ENCFF110MCL/ 428445678 ENCODE Processing Pipeline ded056cb739e82e85c8c2da81fd0e431 https://www.encodeproject.org/files/ENCFF293TQJ/@@download/ENCFF293TQJ.bam released s3://encode-public/2020/10/28/1006e412-93d4-4cfd-ae8e-5d065a4e8681/ENCFF293TQJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF102EWF bam bam alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POQ/, /files/ENCFF110MCL/ 600183107 ENCODE Processing Pipeline 38de7b62979aa5cd84f53882d9dc4605 https://www.encodeproject.org/files/ENCFF102EWF/@@download/ENCFF102EWF.bam released s3://encode-public/2020/10/28/b70003b7-30ad-4dd2-af74-ee43b23193c2/ENCFF102EWF.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF983EZY bam bam unfiltered alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POO/, /files/ENCFF110MCL/ 1302567661 ENCODE Processing Pipeline 9f2859ea90f40c337f74719e1460eadd https://www.encodeproject.org/files/ENCFF983EZY/@@download/ENCFF983EZY.bam released s3://encode-public/2020/10/28/7d4da2c0-a928-46b7-addc-9fba6104dffa/ENCFF983EZY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF744JSC bam bam unfiltered alignments GRCh38 ENCSR000BLH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POQ/, /files/ENCFF110MCL/ 1542314824 ENCODE Processing Pipeline 3a5d4126211296c3dc02cd29fb2c65d1 https://www.encodeproject.org/files/ENCFF744JSC/@@download/ENCFF744JSC.bam released s3://encode-public/2020/10/28/cea18adc-5971-4a14-bbb1-d61a75ac13f8/ENCFF744JSC.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length insufficient read depth ENCFF001HHW bam bam alignments hg19 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF001HID/ 657417888 John Stamatoyannopoulos, UW 6164cad5393282dd732ffccbffa0509c https://www.encodeproject.org/files/ENCFF001HHW/@@download/ENCFF001HHW.bam archived s3://encode-public/2011/06/25/c478e0be-0569-4433-832a-d9388d8b0a27/ENCFF001HHW.bam Lab custom hg19 archived low read depth, low read length ENCFF001HHY bigWig bigWig raw signal hg19 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 /files/ENCFF001HHW/ 151923252 John Stamatoyannopoulos, UW 2bab158907708d385774810cfdc727dc https://www.encodeproject.org/files/ENCFF001HHY/@@download/ENCFF001HHY.bigWig archived s3://encode-public/2011/06/25/5d5803fc-9367-4bf5-be06-6d7fed970fe0/ENCFF001HHY.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HID fastq fastq reads ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 single-ended 707144402 John Stamatoyannopoulos, UW dd208b0322c2ae946934173ec06cceb0 https://www.encodeproject.org/files/ENCFF001HID/@@download/ENCFF001HID.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/843b3003-bb07-41be-9e50-3465b94fb8df/ENCFF001HID.fastq.gz low read depth, low read length ENCFF504ALV bam bam unfiltered alignments GRCh38 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HID/ 869085559 ENCODE Processing Pipeline cb3bf9763c584088346ed312667d928b https://www.encodeproject.org/files/ENCFF504ALV/@@download/ENCFF504ALV.bam released s3://encode-public/2016/08/09/a9dc17ba-273a-40e2-8489-2d651d478ebd/ENCFF504ALV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF094HMB bam bam alignments GRCh38 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HID/ 588161884 ENCODE Processing Pipeline 7ff192c05f9fdee064b72f68df682de8 https://www.encodeproject.org/files/ENCFF094HMB/@@download/ENCFF094HMB.bam released s3://encode-public/2016/08/09/68c791cc-1382-4668-a5a5-9e2786264cd3/ENCFF094HMB.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF892TNJ bam bam alignments hg19 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HID/ 588081073 ENCODE Processing Pipeline ee2bdf3239610d75ad1a25f04a434c47 https://www.encodeproject.org/files/ENCFF892TNJ/@@download/ENCFF892TNJ.bam released s3://encode-public/2016/11/13/5484ffc1-0b33-4cbc-b9d8-3707b9ff93bd/ENCFF892TNJ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF359EAD bam bam unfiltered alignments hg19 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HID/ 864901172 ENCODE Processing Pipeline 3b26cefc807e619b8bbc696534924b10 https://www.encodeproject.org/files/ENCFF359EAD/@@download/ENCFF359EAD.bam released s3://encode-public/2016/11/13/9f87d169-6e08-4c02-be5d-a80084aab158/ENCFF359EAD.bam ENCODE3 hg19 archived low read depth, low read length ENCFF159XTB bam bam alignments GRCh38 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HID/ 645673301 ENCODE Processing Pipeline ee8a5fe121f8a78606575eb3495a2bac https://www.encodeproject.org/files/ENCFF159XTB/@@download/ENCFF159XTB.bam released s3://encode-public/2020/09/03/7965218c-19f4-493b-8def-7522a5db5ad0/ENCFF159XTB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF511HTL bam bam unfiltered alignments GRCh38 ENCSR000DRV Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2011-02-11 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HID/ 849844938 ENCODE Processing Pipeline 2ff9ca430a135492e67500766e310985 https://www.encodeproject.org/files/ENCFF511HTL/@@download/ENCFF511HTL.bam released s3://encode-public/2020/09/03/7611b1d7-74e6-40e8-8ea8-6c40f990c384/ENCFF511HTL.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF267WYT fastq fastq reads ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF953BWE/ 1497958836 Richard Myers, HAIB ba07b2013a9a0c23071c7578f1e740e7 SRA:SRR8660354 https://www.encodeproject.org/files/ENCFF267WYT/@@download/ENCFF267WYT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/1ebf76ed-e033-4918-99f6-0f67449a5526/ENCFF267WYT.fastq.gz ENCFF953BWE fastq fastq reads ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF267WYT/ 1571717299 Richard Myers, HAIB 9752c3c1526ff95c8a47cb04f2606e27 SRA:SRR8660354 https://www.encodeproject.org/files/ENCFF953BWE/@@download/ENCFF953BWE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/2dc44e09-fb7b-4664-88a8-41aa30e4290d/ENCFF953BWE.fastq.gz ENCFF618DFR bam bam unfiltered alignments GRCh38 ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF953BWE/, /files/ENCFF267WYT/ 3772401778 ENCODE Processing Pipeline 4f842c0dec2c834b000775e55c2ce8e1 https://www.encodeproject.org/files/ENCFF618DFR/@@download/ENCFF618DFR.bam released s3://encode-public/2017/02/02/47babda3-a0dd-4320-9d74-1a99d79e1176/ENCFF618DFR.bam ENCODE3 GRCh38 archived ENCFF882CIH bam bam unfiltered alignments hg19 ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF953BWE/, /files/ENCFF267WYT/ 3759038601 ENCODE Processing Pipeline e14d14f11d32d6174ca07d6ed30ea4f6 https://www.encodeproject.org/files/ENCFF882CIH/@@download/ENCFF882CIH.bam released s3://encode-public/2017/02/02/693b8800-cb27-4f53-8d80-b3588933741e/ENCFF882CIH.bam ENCODE3 hg19 archived ENCFF481ALK bam bam alignments GRCh38 ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF953BWE/, /files/ENCFF267WYT/ 2767306052 ENCODE Processing Pipeline e53cb64f45b204ccc736d7810a965382 https://www.encodeproject.org/files/ENCFF481ALK/@@download/ENCFF481ALK.bam released s3://encode-public/2017/02/02/03aa091b-7c78-4883-bd28-74b92fbb2c81/ENCFF481ALK.bam ENCODE3 GRCh38 archived ENCFF807EBL bam bam alignments hg19 ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF953BWE/, /files/ENCFF267WYT/ 2764493866 ENCODE Processing Pipeline 74ad591fda0bcc7289669260a95930a3 https://www.encodeproject.org/files/ENCFF807EBL/@@download/ENCFF807EBL.bam released s3://encode-public/2017/02/02/b90a93d9-691c-4d4c-80cf-71b5960ae86a/ENCFF807EBL.bam ENCODE3 hg19 archived ENCFF745IQO bam bam unfiltered alignments GRCh38 ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF267WYT/, /files/ENCFF953BWE/ 3754115017 ENCODE Processing Pipeline 235827a4dc7030704daee7d4da5d5709 https://www.encodeproject.org/files/ENCFF745IQO/@@download/ENCFF745IQO.bam released s3://encode-public/2020/06/06/a3959933-f26f-4573-83f2-81a29f3b4481/ENCFF745IQO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF606SPT bam bam alignments GRCh38 ENCSR936XMR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF267WYT/, /files/ENCFF953BWE/ 2625704394 ENCODE Processing Pipeline 119dac5a1296c74ace4d5659db740e66 https://www.encodeproject.org/files/ENCFF606SPT/@@download/ENCFF606SPT.bam released s3://encode-public/2020/06/06/515d2d02-5d54-4ba4-893e-7cb705f904e5/ENCFF606SPT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF214HLL fastq fastq reads ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1909310417 Bing Ren, UCSD 7d6fb742e8c9548610fe3762eb1744e7 SRA:SRR3652117 https://www.encodeproject.org/files/ENCFF214HLL/@@download/ENCFF214HLL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/19058b5a-42a0-49b2-acd7-6952e82a080c/ENCFF214HLL.fastq.gz ENCFF884YRX fastq fastq reads ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1717086149 Bing Ren, UCSD 658e2c3949e4373b0dff0e77ebbf94e2 SRA:SRR3652115 https://www.encodeproject.org/files/ENCFF884YRX/@@download/ENCFF884YRX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/c36defe8-b319-4e21-ae85-1efb6d9ef878/ENCFF884YRX.fastq.gz ENCFF751HMJ fastq fastq reads ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 463920290 Bing Ren, UCSD 1c2d255ac2e2652af5cd4a6b6d3f0882 SRA:SRR3652118 https://www.encodeproject.org/files/ENCFF751HMJ/@@download/ENCFF751HMJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/533cdc0d-8da6-49f1-a04e-9c1566ff7d5e/ENCFF751HMJ.fastq.gz ENCFF789POT fastq fastq reads ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 459338044 Bing Ren, UCSD 019a4404519f01c35c6215e222b36662 SRA:SRR3652116 https://www.encodeproject.org/files/ENCFF789POT/@@download/ENCFF789POT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/f5ce0a34-9855-4eb9-b96b-f21622b37379/ENCFF789POT.fastq.gz ENCFF405LXU bam bam alignments mm10-minimal ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF751HMJ/, /files/ENCFF214HLL/, /files/ENCFF806TVZ/ 2365805744 ENCODE Processing Pipeline 3b5459f9898b53ca10f8ceb37646589f https://www.encodeproject.org/files/ENCFF405LXU/@@download/ENCFF405LXU.bam archived s3://encode-public/2016/03/29/bfcabf6e-15c1-4fb0-ac72-e4378ac84343/ENCFF405LXU.bam ENCFF980WPU bam bam alignments mm10-minimal ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF789POT/, /files/ENCFF884YRX/, /files/ENCFF806TVZ/ 2179171535 ENCODE Processing Pipeline b82e4519f0cd8f002515f21fdcbb09d9 https://www.encodeproject.org/files/ENCFF980WPU/@@download/ENCFF980WPU.bam archived s3://encode-public/2016/03/29/255a0905-c2cf-46e9-8084-7a168b0d31ee/ENCFF980WPU.bam ENCFF203JQV bam bam unfiltered alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF018NEO/, /files/ENCFF751HMJ/, /files/ENCFF214HLL/ 3276926584 ENCODE Processing Pipeline 6aa36a40637416526824813e3443bab4 https://www.encodeproject.org/files/ENCFF203JQV/@@download/ENCFF203JQV.bam released s3://encode-public/2016/05/20/01de6dab-da2f-40a8-8b7f-8dde5f9360ff/ENCFF203JQV.bam ENCODE3 mm10 archived ENCFF058AUT bam bam unfiltered alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF789POT/, /files/ENCFF884YRX/, /files/ENCFF018NEO/ 3021217226 ENCODE Processing Pipeline 3c5e8f4fa6f67e99ab86c1d450880188 https://www.encodeproject.org/files/ENCFF058AUT/@@download/ENCFF058AUT.bam released s3://encode-public/2016/05/20/9c107ff7-9823-43ab-9688-4143599ce0f7/ENCFF058AUT.bam ENCODE3 mm10 archived ENCFF399MAG bam bam alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF018NEO/, /files/ENCFF751HMJ/, /files/ENCFF214HLL/ 2365247636 ENCODE Processing Pipeline a14e56eb4170ffcf445dd9652308d694 https://www.encodeproject.org/files/ENCFF399MAG/@@download/ENCFF399MAG.bam released s3://encode-public/2016/05/20/f994fb04-868f-4741-a14e-dbc4a5d4c789/ENCFF399MAG.bam ENCODE3 mm10 archived ENCFF609XDL bam bam alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF789POT/, /files/ENCFF884YRX/, /files/ENCFF018NEO/ 2178643978 ENCODE Processing Pipeline 7c1b2609045572624000d39a94666811 https://www.encodeproject.org/files/ENCFF609XDL/@@download/ENCFF609XDL.bam released s3://encode-public/2016/05/20/17683112-4cda-41eb-9d7c-a1c4168e5c8e/ENCFF609XDL.bam ENCODE3 mm10 archived ENCFF844MYQ bam bam unfiltered alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF789POT/, /files/ENCFF309GLL/, /files/ENCFF884YRX/ 2878504319 ENCODE Processing Pipeline aa45942bf4c60efe2c93f453adf5ab86 https://www.encodeproject.org/files/ENCFF844MYQ/@@download/ENCFF844MYQ.bam released s3://encode-public/2020/10/08/dbcf49eb-2221-453a-8f67-4d473bd61593/ENCFF844MYQ.bam ENCODE4 v1.5.1 mm10 released ENCFF402JGA bam bam unfiltered alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF214HLL/, /files/ENCFF751HMJ/ 3121362112 ENCODE Processing Pipeline 5a30d2bbc24e53efc0d78421e9cfa8e8 https://www.encodeproject.org/files/ENCFF402JGA/@@download/ENCFF402JGA.bam released s3://encode-public/2020/10/08/cfcb7b0b-14fc-4df7-aa32-ebf4ae9e8a50/ENCFF402JGA.bam ENCODE4 v1.5.1 mm10 released ENCFF219CIU bam bam alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF214HLL/, /files/ENCFF751HMJ/ 2381308190 ENCODE Processing Pipeline 998a3d1ad0a75aa2ea5e6b02a05b9b28 https://www.encodeproject.org/files/ENCFF219CIU/@@download/ENCFF219CIU.bam released s3://encode-public/2020/10/08/5bfec56e-9ee0-412b-bad7-af10f6b783c4/ENCFF219CIU.bam ENCODE4 v1.5.1 mm10 released ENCFF690KFH bam bam alignments mm10 ENCSR445HBA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF789POT/, /files/ENCFF309GLL/, /files/ENCFF884YRX/ 2193494649 ENCODE Processing Pipeline d3de0013761d2dd631193fc846215117 https://www.encodeproject.org/files/ENCFF690KFH/@@download/ENCFF690KFH.bam released s3://encode-public/2020/10/08/3abe7e25-b06d-4dec-baef-c3b66e9c4ee3/ENCFF690KFH.bam ENCODE4 v1.5.1 mm10 released ENCFF235AWJ bam bam unfiltered alignments hg19 ENCSR646YPU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26959/'], '@type': ['Target', 'Item'], 'name': 'HBP1-human', 'label': 'HBP1', '@id': '/targets/HBP1-human/', 'title': 'HBP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e01d5729-ffe2-4b98-9bbc-b4a60c4b110b', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF924SLY/ 1011619232 ENCODE Processing Pipeline aedf81aea75d3ddff9ec2b0ccb553c73 https://www.encodeproject.org/files/ENCFF235AWJ/@@download/ENCFF235AWJ.bam released s3://encode-public/2018/02/22/7e6b1cb1-27e7-4aab-ac78-eb2b4515005b/ENCFF235AWJ.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF924SLY fastq fastq reads ENCSR646YPU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26959/'], '@type': ['Target', 'Item'], 'name': 'HBP1-human', 'label': 'HBP1', '@id': '/targets/HBP1-human/', 'title': 'HBP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e01d5729-ffe2-4b98-9bbc-b4a60c4b110b', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 907735574 Kevin White, UChicago 1b86f6857296572811974ed49e5c0b96 SRA:SRR14107755 https://www.encodeproject.org/files/ENCFF924SLY/@@download/ENCFF924SLY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/03/14/f17b7502-9c42-48a8-8da8-adc2dd9e4570/ENCFF924SLY.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF068KXS bam bam alignments hg19 ENCSR646YPU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26959/'], '@type': ['Target', 'Item'], 'name': 'HBP1-human', 'label': 'HBP1', '@id': '/targets/HBP1-human/', 'title': 'HBP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e01d5729-ffe2-4b98-9bbc-b4a60c4b110b', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF924SLY/ 788518269 ENCODE Processing Pipeline 29d80e85df808bdc3296e37e6d20f2a9 https://www.encodeproject.org/files/ENCFF068KXS/@@download/ENCFF068KXS.bam released s3://encode-public/2016/04/23/12bce8e5-1afd-4056-b73c-1368a77142bd/ENCFF068KXS.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF401AMX bam bam unfiltered alignments GRCh38 ENCSR646YPU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26959/'], '@type': ['Target', 'Item'], 'name': 'HBP1-human', 'label': 'HBP1', '@id': '/targets/HBP1-human/', 'title': 'HBP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e01d5729-ffe2-4b98-9bbc-b4a60c4b110b', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF924SLY/ 1016774544 ENCODE Processing Pipeline 812d3280bfcd0b3bca504fb334162b4e https://www.encodeproject.org/files/ENCFF401AMX/@@download/ENCFF401AMX.bam released s3://encode-public/2016/05/06/cf0acbe7-a319-463a-a7f3-08a04e89dfe4/ENCFF401AMX.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF508CVZ bam bam alignments GRCh38 ENCSR646YPU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26959/'], '@type': ['Target', 'Item'], 'name': 'HBP1-human', 'label': 'HBP1', '@id': '/targets/HBP1-human/', 'title': 'HBP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e01d5729-ffe2-4b98-9bbc-b4a60c4b110b', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF924SLY/ 788328804 ENCODE Processing Pipeline d77c0a0f998f4a5fc8f4f8925306de41 https://www.encodeproject.org/files/ENCFF508CVZ/@@download/ENCFF508CVZ.bam released s3://encode-public/2016/05/06/c9a8fabe-f218-4b92-aedb-9d6ed8700bc2/ENCFF508CVZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF492ZSE bam bam alignments GRCh38 ENCSR646YPU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26959/'], '@type': ['Target', 'Item'], 'name': 'HBP1-human', 'label': 'HBP1', '@id': '/targets/HBP1-human/', 'title': 'HBP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e01d5729-ffe2-4b98-9bbc-b4a60c4b110b', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF924SLY/, /files/ENCFF110MCL/ 836539848 ENCODE Processing Pipeline 0e231d21cf176721ce1ad17d438ba44c https://www.encodeproject.org/files/ENCFF492ZSE/@@download/ENCFF492ZSE.bam released s3://encode-public/2020/10/27/fca35f15-cb71-4011-89a9-b4be7c371df5/ENCFF492ZSE.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF271OJY bam bam unfiltered alignments GRCh38 ENCSR646YPU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26959/'], '@type': ['Target', 'Item'], 'name': 'HBP1-human', 'label': 'HBP1', '@id': '/targets/HBP1-human/', 'title': 'HBP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e01d5729-ffe2-4b98-9bbc-b4a60c4b110b', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF924SLY/, /files/ENCFF110MCL/ 1014378357 ENCODE Processing Pipeline a2094036f7bbfc1037aa35c0f2447889 https://www.encodeproject.org/files/ENCFF271OJY/@@download/ENCFF271OJY.bam released s3://encode-public/2020/10/27/8933a386-b701-46a6-8e46-8691233a692c/ENCFF271OJY.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF001HQJ bam bam alignments hg19 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HQN/ 1002558059 John Stamatoyannopoulos, UW 230397d763983496c6a0e7aba97b8bde https://www.encodeproject.org/files/ENCFF001HQJ/@@download/ENCFF001HQJ.bam archived s3://encode-public/2011/06/25/a87428f2-daad-4d81-9599-98fe8f20e6f2/ENCFF001HQJ.bam Lab custom hg19 archived low read depth, low read length ENCFF001HQK bigWig bigWig raw signal hg19 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HQJ/ 201332023 John Stamatoyannopoulos, UW bc00b2da0f6be78b6a4d6b45194cf591 https://www.encodeproject.org/files/ENCFF001HQK/@@download/ENCFF001HQK.bigWig archived s3://encode-public/2011/06/25/97db1c2c-ed0a-4c4f-9ae7-bbc0a3ffec1b/ENCFF001HQK.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HQN fastq fastq reads ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 1059345341 John Stamatoyannopoulos, UW e5cf829b3004b607a9a180b43cf5dcfc https://www.encodeproject.org/files/ENCFF001HQN/@@download/ENCFF001HQN.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/70c0f07a-beae-4cf8-8ffe-87af781d4add/ENCFF001HQN.fastq.gz low read depth, low read length ENCFF160XMD bam bam unfiltered alignments GRCh38 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HQN/, /files/ENCFF643CGH/ 1288832879 ENCODE Processing Pipeline afa0f7f70fdc33b8a4cd496c24e9dbd2 https://www.encodeproject.org/files/ENCFF160XMD/@@download/ENCFF160XMD.bam released s3://encode-public/2016/08/09/45e656bb-bbf0-4d43-8733-6f300876948a/ENCFF160XMD.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF886XYV bam bam alignments GRCh38 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HQN/, /files/ENCFF643CGH/ 896183127 ENCODE Processing Pipeline c51a29e2d1eaac5cade79200511b6ec2 https://www.encodeproject.org/files/ENCFF886XYV/@@download/ENCFF886XYV.bam released s3://encode-public/2016/08/09/6c8aedbc-01a5-483f-ac99-bd7e0f2e106e/ENCFF886XYV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF463QOK bam bam unfiltered alignments hg19 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HQN/, /files/ENCFF807MUK/ 1281178096 ENCODE Processing Pipeline 7cea3042d973432bff5d848f90d3bcb3 https://www.encodeproject.org/files/ENCFF463QOK/@@download/ENCFF463QOK.bam released s3://encode-public/2016/11/13/d65c7860-bbfe-47de-bb69-3da0891ca545/ENCFF463QOK.bam ENCODE3 hg19 archived low read depth, low read length ENCFF327YGC bam bam alignments hg19 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HQN/, /files/ENCFF807MUK/ 896417270 ENCODE Processing Pipeline 9c3850b542716e3216697696803ce0c4 https://www.encodeproject.org/files/ENCFF327YGC/@@download/ENCFF327YGC.bam released s3://encode-public/2016/11/13/7fcd714a-7aa6-422b-8833-8c599d6f8121/ENCFF327YGC.bam ENCODE3 hg19 archived low read depth, low read length ENCFF421NCP bam bam alignments GRCh38 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HQN/, /files/ENCFF110MCL/ 959633318 ENCODE Processing Pipeline cb24741757db2339013ae5e3f79ba615 https://www.encodeproject.org/files/ENCFF421NCP/@@download/ENCFF421NCP.bam released s3://encode-public/2020/09/03/3deb5f2a-ec3d-4549-962f-757127d80703/ENCFF421NCP.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF334TJK bam bam unfiltered alignments GRCh38 ENCSR000DUY Control ChIP-seq /human-donors/ENCDO245AAA/ CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HQN/, /files/ENCFF110MCL/ 1261310616 ENCODE Processing Pipeline 3d1ce36ade440dd1c11463259e792c7b https://www.encodeproject.org/files/ENCFF334TJK/@@download/ENCFF334TJK.bam released s3://encode-public/2020/09/03/176fb0eb-816c-4841-87f4-8eb539721e6f/ENCFF334TJK.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF165UVC fastq fastq reads ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF694VZW/ 3154640028 Michael Snyder, Stanford 9367c490951a59a526a578d60d020953 SRA:SRR6213998 https://www.encodeproject.org/files/ENCFF165UVC/@@download/ENCFF165UVC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/1d81d20d-e367-4476-ac79-ae48750b7013/ENCFF165UVC.fastq.gz ENCFF694VZW fastq fastq reads ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF165UVC/ 3227108669 Michael Snyder, Stanford 499adae3554a26c8a50a30bb33bde489 SRA:SRR6213998 https://www.encodeproject.org/files/ENCFF694VZW/@@download/ENCFF694VZW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/5a4fb823-8960-43c9-998e-cacac136664f/ENCFF694VZW.fastq.gz ENCFF796VOZ bam bam unfiltered alignments GRCh38 ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF165UVC/, /files/ENCFF643CGH/, /files/ENCFF694VZW/ 6994292216 ENCODE Processing Pipeline 3f80dd149655530f91266f9d87a7b3d5 https://www.encodeproject.org/files/ENCFF796VOZ/@@download/ENCFF796VOZ.bam released s3://encode-public/2016/05/06/0f1f1106-3763-434c-8349-bd6bc1fc554c/ENCFF796VOZ.bam ENCODE3 GRCh38 archived ENCFF376BTL bam bam alignments GRCh38 ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF165UVC/, /files/ENCFF643CGH/, /files/ENCFF694VZW/ 5836867602 ENCODE Processing Pipeline 83d00e9dbc4d43461e503819c332d6ec https://www.encodeproject.org/files/ENCFF376BTL/@@download/ENCFF376BTL.bam released s3://encode-public/2016/05/06/a3ea2a52-5d5b-4c29-b9b8-f3aa0869d54f/ENCFF376BTL.bam ENCODE3 GRCh38 archived ENCFF370MZT bam bam unfiltered alignments hg19 ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF165UVC/, /files/ENCFF807MUK/, /files/ENCFF694VZW/ 6983748842 ENCODE Processing Pipeline 2da09813830959e4f792bed7ddf2cff0 https://www.encodeproject.org/files/ENCFF370MZT/@@download/ENCFF370MZT.bam released s3://encode-public/2016/12/06/bd86989c-8b9f-4cbc-9db8-aacd87bc7cba/ENCFF370MZT.bam ENCODE3 hg19 archived ENCFF403WUZ bam bam alignments hg19 ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF165UVC/, /files/ENCFF807MUK/, /files/ENCFF694VZW/ 5822819199 ENCODE Processing Pipeline 24e529be9c3f60036f3f91f48928a55f https://www.encodeproject.org/files/ENCFF403WUZ/@@download/ENCFF403WUZ.bam released s3://encode-public/2016/12/06/0f9b3bd1-045e-4291-be9c-d598887bf15e/ENCFF403WUZ.bam ENCODE3 hg19 archived ENCFF836FIC bam bam unfiltered alignments GRCh38 ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF165UVC/, /files/ENCFF694VZW/ 6968898234 ENCODE Processing Pipeline 9d5157bec696ba5480dd00ab3324e97b https://www.encodeproject.org/files/ENCFF836FIC/@@download/ENCFF836FIC.bam released s3://encode-public/2020/05/21/b9c199cf-dd46-4c6e-a3b8-eae53102d834/ENCFF836FIC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF305CPV bam bam alignments GRCh38 ENCSR819SSW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF165UVC/, /files/ENCFF694VZW/ 5767889695 ENCODE Processing Pipeline c337a2513ccf425c382ba7d734aa399c https://www.encodeproject.org/files/ENCFF305CPV/@@download/ENCFF305CPV.bam released s3://encode-public/2020/05/21/a54ff1c5-785c-4534-9fc3-93f1e111c5bc/ENCFF305CPV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF843AVE bam bam redacted alignments GRCh38 ENCSR233DXC Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF260ZFD/ 525173434 ENCODE Processing Pipeline bdce35fa25ed3ef4ca1ec020a2317d8e https://www.encodeproject.org/files/ENCFF843AVE/@@download/ENCFF843AVE.bam released s3://encode-public/2017/11/09/b3e9ca2e-81a4-45d7-a8e2-5bba9906eb49/ENCFF843AVE.bam ENCODE3 GRCh38 archived ENCFF991CYC bam bam redacted unfiltered alignments GRCh38 ENCSR233DXC Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF260ZFD/ 658998947 ENCODE Processing Pipeline 80afd1429772c0cb1ca742e2b62c8ad1 https://www.encodeproject.org/files/ENCFF991CYC/@@download/ENCFF991CYC.bam released s3://encode-public/2017/11/09/9a73e28a-bd49-4b38-9b1d-38e1dd78724e/ENCFF991CYC.bam ENCODE3 GRCh38 archived ENCFF258ODH bam bam redacted unfiltered alignments hg19 ENCSR233DXC Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF260ZFD/ 646879874 ENCODE Processing Pipeline 8b79d5cdfd35445d9c09651dff06444f https://www.encodeproject.org/files/ENCFF258ODH/@@download/ENCFF258ODH.bam released s3://encode-public/2018/01/20/a5e93d16-bc74-495c-8cbd-01f65c0efcad/ENCFF258ODH.bam ENCODE3 hg19 archived ENCFF104PKT bam bam redacted alignments hg19 ENCSR233DXC Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF260ZFD/ 524269022 ENCODE Processing Pipeline 1bf23aa67b098134eccb6eec9587492b https://www.encodeproject.org/files/ENCFF104PKT/@@download/ENCFF104PKT.bam released s3://encode-public/2018/01/20/771bbd75-03b3-438c-8d79-6a6b3d690fdb/ENCFF104PKT.bam ENCODE3 hg19 archived ENCFF269SUW bam bam redacted alignments GRCh38 ENCSR233DXC Control ChIP-seq /human-donors/ENCDO981EWY/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF718QTB/ 3125732026 ENCODE Processing Pipeline 8ca95e4e3387bae4edbadaff87592325 https://www.encodeproject.org/files/ENCFF269SUW/@@download/ENCFF269SUW.bam released s3://encode-public/2021/01/28/3ab57846-40ba-4246-9379-d6ba7ab88bfe/ENCFF269SUW.bam ENCODE4 v1.7.0 GRCh38 released ENCFF660BQP tagAlign tagAlign alignments hg19 ENCSR062EYI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF481DNM/, /files/ENCFF531ACX/ 423109127 Anshul Kundaje, Stanford e0817bc4a56bdf7542e685e78bbeebb0 https://www.encodeproject.org/files/ENCFF660BQP/@@download/ENCFF660BQP.tagAlign.gz archived s3://encode-public/2016/05/02/a6faa87f-7994-448b-8e08-f815bef60631/ENCFF660BQP.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF755TXH bam bam redacted alignments GRCh38 ENCSR062EYI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF531ACX/, /files/ENCFF481DNM/ 907726959 ENCODE Processing Pipeline fe32887dd392b047c09046b4bf02628f https://www.encodeproject.org/files/ENCFF755TXH/@@download/ENCFF755TXH.bam released s3://encode-public/2018/01/26/d75f73e5-5f5a-4e2f-bc46-4cbb35d6d564/ENCFF755TXH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF273BYR bam bam redacted unfiltered alignments GRCh38 ENCSR062EYI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF531ACX/, /files/ENCFF481DNM/ 1374761022 ENCODE Processing Pipeline ac0ad1efd71bcb667c28bbadc547126d https://www.encodeproject.org/files/ENCFF273BYR/@@download/ENCFF273BYR.bam released s3://encode-public/2018/01/26/59e898c1-64d1-42c2-a4e5-ea580948e1d5/ENCFF273BYR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF809OMU bam bam redacted unfiltered alignments hg19 ENCSR062EYI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF531ACX/, /files/ENCFF481DNM/ 1362397236 ENCODE Processing Pipeline c0c1bd60473d0f57f9a1baea1830e3a3 https://www.encodeproject.org/files/ENCFF809OMU/@@download/ENCFF809OMU.bam released s3://encode-public/2018/01/26/1b81d28b-fe79-480b-b2ae-71309901143f/ENCFF809OMU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF676PSW bam bam redacted alignments hg19 ENCSR062EYI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF531ACX/, /files/ENCFF481DNM/ 907854429 ENCODE Processing Pipeline 75f364e45469b519f41ce03c4c3259de https://www.encodeproject.org/files/ENCFF676PSW/@@download/ENCFF676PSW.bam released s3://encode-public/2018/01/26/7c4a6813-a287-4334-be3d-8aeea36658a1/ENCFF676PSW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF859MRJ bam bam redacted alignments GRCh38 ENCSR062EYI Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000221 ectodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF481DNM/, /files/ENCFF531ACX/ 2776114213 ENCODE Processing Pipeline e544a95d623e5cd96512dcac33a58238 https://www.encodeproject.org/files/ENCFF859MRJ/@@download/ENCFF859MRJ.bam released s3://encode-public/2021/01/28/241d0536-8e35-47b7-8c4a-b4b4aa9fd6f1/ENCFF859MRJ.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length ENCFF879XFU fastq fastq reads ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 single-ended 1029865047 Zhiping Weng, UMass b203587b8eda2321e5236b16611760cb SRA:SRR449622 https://www.encodeproject.org/files/ENCFF879XFU/@@download/ENCFF879XFU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/27e81fc1-d406-4ece-8f4f-d6f9d465190d/ENCFF879XFU.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF415KFB fastq fastq reads ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1079223579 Zhiping Weng, UMass b9aeda801658ab9c69ce2efc210d3d4f SRA:SRR518307 https://www.encodeproject.org/files/ENCFF415KFB/@@download/ENCFF415KFB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/784e4888-0ace-42c1-9485-b3fefcabd5fe/ENCFF415KFB.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF926RUG bam bam unfiltered alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF415KFB/ 1243517809 ENCODE Processing Pipeline 71ea934f07dfb271256f3a339e6fa72f https://www.encodeproject.org/files/ENCFF926RUG/@@download/ENCFF926RUG.bam released s3://encode-public/2016/12/19/7d436125-f614-4125-b3e0-7877cf7e0801/ENCFF926RUG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF128GHG bam bam unfiltered alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF879XFU/ 1272331380 ENCODE Processing Pipeline eb79a76550fb93505a5b820fb63f2942 https://www.encodeproject.org/files/ENCFF128GHG/@@download/ENCFF128GHG.bam released s3://encode-public/2016/12/19/573a7fde-b8dc-4dbd-be6d-4fbeb72af66b/ENCFF128GHG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF126ARS bam bam unfiltered alignments hg19 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF879XFU/ 1265571076 ENCODE Processing Pipeline 80fa6404d9ef5a89157898772bb12ddc https://www.encodeproject.org/files/ENCFF126ARS/@@download/ENCFF126ARS.bam released s3://encode-public/2016/12/19/c595591b-c4e3-455a-8afa-5fd8242f028e/ENCFF126ARS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF859GMA bam bam alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF415KFB/ 637142720 ENCODE Processing Pipeline d84537480710326c1a1eb60b9c4a6017 https://www.encodeproject.org/files/ENCFF859GMA/@@download/ENCFF859GMA.bam released s3://encode-public/2016/12/19/5fe3a41c-895d-4003-b014-0b827c1fb316/ENCFF859GMA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF344HIF bam bam unfiltered alignments hg19 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF415KFB/ 1238116289 ENCODE Processing Pipeline 5656d06ce335290e68aeac4e37d70afc https://www.encodeproject.org/files/ENCFF344HIF/@@download/ENCFF344HIF.bam released s3://encode-public/2016/12/19/de2bdb5d-0e83-43d4-ba83-5aab72aee522/ENCFF344HIF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF894ZBD bam bam alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF879XFU/ 747283004 ENCODE Processing Pipeline 2f5c918f06459d8ee16355082163cafa https://www.encodeproject.org/files/ENCFF894ZBD/@@download/ENCFF894ZBD.bam released s3://encode-public/2016/12/19/59435295-7002-4ffa-b685-d374490bb4e8/ENCFF894ZBD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF776EGY bam bam alignments hg19 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF879XFU/ 747480322 ENCODE Processing Pipeline 685274aacb7633c807801be8bb397ada https://www.encodeproject.org/files/ENCFF776EGY/@@download/ENCFF776EGY.bam released s3://encode-public/2016/12/19/e92b6211-5a49-4363-acbc-c549237dbcb0/ENCFF776EGY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF075EVY bam bam alignments hg19 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF415KFB/ 637453770 ENCODE Processing Pipeline c36f974d3ec3d0a2acbc3f7c2a0af0f3 https://www.encodeproject.org/files/ENCFF075EVY/@@download/ENCFF075EVY.bam released s3://encode-public/2016/12/19/ce0e04fc-11f8-4a8f-9208-14f9a5ac9bc1/ENCFF075EVY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF388HWJ tagAlign tagAlign alignments hg19 ENCSR061VJM Control ChIP-seq UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 203094827 Anshul Kundaje, Stanford 55df6b8c3b2139847521fb3e641947ba https://www.encodeproject.org/files/ENCFF388HWJ/@@download/ENCFF388HWJ.tagAlign.gz archived s3://encode-public/2016/02/11/419f6d35-dcd9-46cf-8e83-2b45ab3d2e67/ENCFF388HWJ.tagAlign.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF684FZW bam bam unfiltered alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF415KFB/, /files/ENCFF110MCL/ 1211742303 ENCODE Processing Pipeline 005cd021362fd71e6f9883b522fe8ab5 https://www.encodeproject.org/files/ENCFF684FZW/@@download/ENCFF684FZW.bam released s3://encode-public/2020/08/06/76e5dbd3-7f6d-4aff-adfd-6e5034f473ab/ENCFF684FZW.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF246WJU bam bam unfiltered alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF879XFU/, /files/ENCFF110MCL/ 1231693632 ENCODE Processing Pipeline c31dad3286117455d0d10245460c9b10 https://www.encodeproject.org/files/ENCFF246WJU/@@download/ENCFF246WJU.bam released s3://encode-public/2020/08/06/a7066019-4e0b-47a0-8f99-f550999e8fef/ENCFF246WJU.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF238VLC bam bam alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF415KFB/, /files/ENCFF110MCL/ 691136740 ENCODE Processing Pipeline bbed30f78306f244908a43b86e703ca3 https://www.encodeproject.org/files/ENCFF238VLC/@@download/ENCFF238VLC.bam released s3://encode-public/2020/08/06/9a4dd7e8-8fae-4783-8b9a-fc7aa79484f4/ENCFF238VLC.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF391TMO bam bam alignments GRCh38 ENCSR061VJM Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF879XFU/, /files/ENCFF110MCL/ 828259033 ENCODE Processing Pipeline 0cd3a9b9333d48ae67eaf0e362df124d https://www.encodeproject.org/files/ENCFF391TMO/@@download/ENCFF391TMO.bam released s3://encode-public/2020/08/06/fa138752-7e01-42a1-a398-98aa5e35d75c/ENCFF391TMO.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF225QVL fastq fastq reads ENCSR754WVA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 single-ended 1947784910 Bradley Bernstein, Broad 5fad396b006e34810826dd9475afda3b SRA:SRR5339303 https://www.encodeproject.org/files/ENCFF225QVL/@@download/ENCFF225QVL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/25220873-52ea-43b2-a005-c40bafd0d686/ENCFF225QVL.fastq.gz ENCFF579ITQ bam bam alignments GRCh38 ENCSR754WVA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF225QVL/ 1941698393 ENCODE Processing Pipeline 62f3f3901405975ea552041847109f64 https://www.encodeproject.org/files/ENCFF579ITQ/@@download/ENCFF579ITQ.bam released s3://encode-public/2016/04/23/1250bcd9-93ba-4dd1-9a9a-5a90235672ea/ENCFF579ITQ.bam ENCODE3 GRCh38 archived ENCFF782PUV bam bam unfiltered alignments GRCh38 ENCSR754WVA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF225QVL/ 2336266501 ENCODE Processing Pipeline 091524570b89ce0e55e74fd1ead9f229 https://www.encodeproject.org/files/ENCFF782PUV/@@download/ENCFF782PUV.bam released s3://encode-public/2016/05/05/f25f774a-b65e-49d4-b768-b548cc306eff/ENCFF782PUV.bam ENCODE3 GRCh38 archived ENCFF445PCP bam bam unfiltered alignments hg19 ENCSR754WVA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF225QVL/ 2328913992 ENCODE Processing Pipeline ee770fc86801ff45b13d3e2ef2ab80c9 https://www.encodeproject.org/files/ENCFF445PCP/@@download/ENCFF445PCP.bam released s3://encode-public/2016/10/26/b5dd96a4-46d3-42de-83ab-83555c95d2e6/ENCFF445PCP.bam ENCODE3 hg19 archived ENCFF722BYQ bam bam alignments hg19 ENCSR754WVA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF225QVL/ 1938478856 ENCODE Processing Pipeline 25dc32ff857fc3eb18e672a03a78361a https://www.encodeproject.org/files/ENCFF722BYQ/@@download/ENCFF722BYQ.bam released s3://encode-public/2016/10/26/906e2dac-8fc4-42c1-867a-09acb356c737/ENCFF722BYQ.bam ENCODE3 hg19 archived ENCFF523WWT bam bam unfiltered alignments GRCh38 ENCSR754WVA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF225QVL/ 2363024912 ENCODE Processing Pipeline 511209df44ad78e78dddcf47cf68a76e https://www.encodeproject.org/files/ENCFF523WWT/@@download/ENCFF523WWT.bam released s3://encode-public/2020/08/20/3ac2efbd-f18a-4639-95cf-24f16436e3c4/ENCFF523WWT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF594HLU bam bam alignments GRCh38 ENCSR754WVA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF225QVL/ 1984453064 ENCODE Processing Pipeline 0db690e9fca5b7481786ac09c39c02ad https://www.encodeproject.org/files/ENCFF594HLU/@@download/ENCFF594HLU.bam released s3://encode-public/2020/08/20/e3b6946f-7456-4ec6-bd29-21af6ba49b2e/ENCFF594HLU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF989HNZ bam bam redacted alignments GRCh38 ENCSR363KHN Control ChIP-seq /human-donors/ENCDO974LFM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF494FEI/ 388804469 ENCODE Processing Pipeline 4ca9db42eeaad3fa5c5c6ebd4c17ff7a https://www.encodeproject.org/files/ENCFF989HNZ/@@download/ENCFF989HNZ.bam released s3://encode-public/2017/11/09/8c85b316-fe36-42f7-98d8-f4dd92ffd185/ENCFF989HNZ.bam ENCODE3 GRCh38 archived ENCFF103KMU bam bam redacted unfiltered alignments GRCh38 ENCSR363KHN Control ChIP-seq /human-donors/ENCDO974LFM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF494FEI/ 494845870 ENCODE Processing Pipeline ed575d9d5c1df856fbba1cad11ad5bc9 https://www.encodeproject.org/files/ENCFF103KMU/@@download/ENCFF103KMU.bam released s3://encode-public/2017/11/09/55bc0716-ac22-45ec-9e1d-d92d2223583a/ENCFF103KMU.bam ENCODE3 GRCh38 archived ENCFF717YRH bam bam redacted alignments hg19 ENCSR363KHN Control ChIP-seq /human-donors/ENCDO974LFM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF494FEI/ 388191783 ENCODE Processing Pipeline feb126b51f67767bfb2cab900f7fbe15 https://www.encodeproject.org/files/ENCFF717YRH/@@download/ENCFF717YRH.bam released s3://encode-public/2018/01/20/c3bc4ae3-8d17-4e8d-a96d-85b5f6e3e211/ENCFF717YRH.bam ENCODE3 hg19 archived ENCFF977HSA bam bam redacted unfiltered alignments hg19 ENCSR363KHN Control ChIP-seq /human-donors/ENCDO974LFM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, 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/files/ENCFF858BWI/, /files/ENCFF988ODF/, /files/ENCFF643CGH/ 5005635185 ENCODE Processing Pipeline 50245358ac168837c9a4a87741e1f1fe https://www.encodeproject.org/files/ENCFF281KRB/@@download/ENCFF281KRB.bam released s3://encode-public/2016/05/06/a2c65eed-eca1-4c7d-bb1d-8206903ce77c/ENCFF281KRB.bam ENCODE3 GRCh38 archived ENCFF932XVT bam bam alignments GRCh38 ENCSR308RWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF858BWI/, /files/ENCFF988ODF/, /files/ENCFF643CGH/ 4309484389 ENCODE Processing Pipeline 96bca95c6a672e65437c67f4a5e4ca49 https://www.encodeproject.org/files/ENCFF932XVT/@@download/ENCFF932XVT.bam released s3://encode-public/2016/05/06/17728581-7b36-4450-b730-757ead49946b/ENCFF932XVT.bam ENCODE3 GRCh38 archived ENCFF534ROG bam bam unfiltered alignments hg19 ENCSR308RWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF858BWI/, /files/ENCFF988ODF/, /files/ENCFF807MUK/ 4995206727 ENCODE Processing Pipeline 77d115103c03b2bb9622fdfecaeac84b https://www.encodeproject.org/files/ENCFF534ROG/@@download/ENCFF534ROG.bam released s3://encode-public/2016/12/06/d2f86e71-1b9a-476a-8b31-0313783010a1/ENCFF534ROG.bam ENCODE3 hg19 archived ENCFF316UCQ bam bam alignments hg19 ENCSR308RWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF858BWI/, /files/ENCFF988ODF/, /files/ENCFF807MUK/ 4303834212 ENCODE Processing Pipeline c71e66d929d2f92bc8d9dfbfacb1f918 https://www.encodeproject.org/files/ENCFF316UCQ/@@download/ENCFF316UCQ.bam released s3://encode-public/2016/12/06/663fa317-4744-4f6d-ba40-40754679e442/ENCFF316UCQ.bam ENCODE3 hg19 archived ENCFF671BNI bam bam alignments GRCh38 ENCSR308RWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF988ODF/, /files/ENCFF858BWI/ 4213728793 ENCODE Processing Pipeline ed5e04a7a511c57aba4b0428aa805918 https://www.encodeproject.org/files/ENCFF671BNI/@@download/ENCFF671BNI.bam released s3://encode-public/2020/06/06/acafb518-a66f-4f14-9b80-8a91da51cbd2/ENCFF671BNI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF283WMW fastq fastq reads ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 174141749 Michael Snyder, Stanford 70bdf77bafa57992d12ce6ae38d5e5a6 https://www.encodeproject.org/files/ENCFF283WMW/@@download/ENCFF283WMW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/b9a8344c-25d9-49b0-8c22-ff841a49f4e4/ENCFF283WMW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF173VZO fastq fastq reads ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 158822178 Michael Snyder, Stanford 29cb548519c2217821816aae4e3bd3fa https://www.encodeproject.org/files/ENCFF173VZO/@@download/ENCFF173VZO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/5403b67f-4124-4116-8b19-9b4e77506055/ENCFF173VZO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF191CJX bam bam alignments ce10 ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF283WMW/, /files/ENCFF173VZO/, /files/ENCFF987UMF/ 434741591 Kevin White, UChicago 44e52307b89743df1e7e83b6ecb0ec5f https://www.encodeproject.org/files/ENCFF191CJX/@@download/ENCFF191CJX.bam released s3://encode-public/2017/04/27/e6adcf0e-61ba-4940-bc14-ec0e9f56bf08/ENCFF191CJX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF063VJS bam bam alignments ce11 ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF283WMW/, /files/ENCFF173VZO/, /files/ENCFF586MOL/ 435194095 Kevin White, UChicago a90964e9818a945809c0424f6f99dbb0 https://www.encodeproject.org/files/ENCFF063VJS/@@download/ENCFF063VJS.bam released s3://encode-public/2017/04/27/06450203-1832-451c-b1e2-61acd6ac7dff/ENCFF063VJS.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF879DHZ bigWig bigWig read-depth normalized signal ce10 ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF191CJX/ 9981238 Kevin White, UChicago eb51dd381397fc415c39c17e75e59329 https://www.encodeproject.org/files/ENCFF879DHZ/@@download/ENCFF879DHZ.bigWig released s3://encode-public/2017/04/29/054d8eb0-f133-4950-92d1-e415c6ec03a6/ENCFF879DHZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF013AOJ bigWig bigWig signal of unique reads ce10 ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF191CJX/ 10012344 Kevin White, UChicago f01c15d8adecd5b5a2653ffb1043104e https://www.encodeproject.org/files/ENCFF013AOJ/@@download/ENCFF013AOJ.bigWig released s3://encode-public/2017/04/29/d4bc8e7d-bfb1-4b04-a7d1-61c2d81c8f68/ENCFF013AOJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF500DKI bigWig bigWig read-depth normalized signal ce11 ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF063VJS/ 9974711 Kevin White, UChicago 655cdf66c24507fbd0f70a0cb7ed7616 https://www.encodeproject.org/files/ENCFF500DKI/@@download/ENCFF500DKI.bigWig released s3://encode-public/2017/04/29/451058e3-20a4-4598-9e95-814443d61568/ENCFF500DKI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF538PYQ bigWig bigWig signal of unique reads ce11 ENCSR217FIF Control ChIP-seq /worm-donors/ENCDO713KKY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172845/'], '@type': ['Target', 'Item'], 'name': 'ztf-11-celegans', 'label': 'ztf-11', '@id': '/targets/ztf-11-celegans/', 'title': 'ztf-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '69a88088-89e9-443b-bbec-823306dfcd76', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF063VJS/ 10009111 Kevin White, UChicago a01d475edb874843c54a06cdec16b6c8 https://www.encodeproject.org/files/ENCFF538PYQ/@@download/ENCFF538PYQ.bigWig released s3://encode-public/2017/04/29/c0917aa0-72ff-48d1-a306-9eb48935f2a1/ENCFF538PYQ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF269MZC bam bam alignments mm10-minimal ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF515ALU/ 1984523666 ENCODE Processing Pipeline c29a79faca7539f7b8a9922ad0c0a5fb https://www.encodeproject.org/files/ENCFF269MZC/@@download/ENCFF269MZC.bam archived s3://encode-public/2015/06/24/cf6e3573-e7fb-4dc0-a8fd-98beb4833e82/ENCFF269MZC.bam ENCFF170XAR bam bam alignments mm10-minimal ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF246LOG/, /files/ENCFF806TVZ/ 1953557009 ENCODE Processing Pipeline 705608dfa48cd78e3aa15f60c68b0e2f https://www.encodeproject.org/files/ENCFF170XAR/@@download/ENCFF170XAR.bam archived s3://encode-public/2015/06/24/b51cadd5-0d26-4f44-ac13-ecf70d5c9018/ENCFF170XAR.bam ENCFF246LOG fastq fastq reads ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2264497390 Bing Ren, UCSD 54f7a9a9129aff76a6f3bec9d7fec25f SRA:SRR3652180 https://www.encodeproject.org/files/ENCFF246LOG/@@download/ENCFF246LOG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/ea622901-52f4-423f-bb8a-c85acb014a0e/ENCFF246LOG.fastq.gz ENCFF515ALU fastq fastq reads ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2305003331 Bing Ren, UCSD 1f98842862561e88779ad942e8fe84e6 SRA:SRR3652178 https://www.encodeproject.org/files/ENCFF515ALU/@@download/ENCFF515ALU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/59fd1b40-2b73-4901-b850-35fffac9579f/ENCFF515ALU.fastq.gz ENCFF262OPL fastq fastq reads ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 500536894 Bing Ren, UCSD 08b8e2853231188e6f3c9a7f92a508af SRA:SRR3652179 https://www.encodeproject.org/files/ENCFF262OPL/@@download/ENCFF262OPL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/cb092747-531f-4e46-ad48-78a3f8cb3709/ENCFF262OPL.fastq.gz ENCFF298XQU fastq fastq reads ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 769054512 Bing Ren, UCSD 338f695264ae9ceb827e9e3b54b0d7f6 SRA:SRR3652181 https://www.encodeproject.org/files/ENCFF298XQU/@@download/ENCFF298XQU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/cb7796ab-e187-4285-9206-0ecdfa0c65d0/ENCFF298XQU.fastq.gz ENCFF876QJH bam bam alignments mm10 ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF246LOG/, /files/ENCFF298XQU/ 2772426435 ENCODE Processing Pipeline 40f07dd1d9bf1bbc540e3a82dfc64f0e https://www.encodeproject.org/files/ENCFF876QJH/@@download/ENCFF876QJH.bam released s3://encode-public/2016/07/18/d6df97db-7e0d-4154-bbc7-f1e4e1fc7e08/ENCFF876QJH.bam ENCODE3 mm10 archived ENCFF200JPL bam bam alignments mm10 ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF262OPL/, /files/ENCFF515ALU/ 2527097035 ENCODE Processing Pipeline 3ac9fcaf004e6f3461725e22d8c8d579 https://www.encodeproject.org/files/ENCFF200JPL/@@download/ENCFF200JPL.bam released s3://encode-public/2016/07/18/456cacfd-22c2-4307-9b57-8c04f7260cb2/ENCFF200JPL.bam ENCODE3 mm10 archived ENCFF936XBC bam bam unfiltered alignments mm10 ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF018NEO/, /files/ENCFF262OPL/, /files/ENCFF515ALU/ 3590539306 ENCODE Processing Pipeline fcff30ab1529a0a87c539810373cff3b https://www.encodeproject.org/files/ENCFF936XBC/@@download/ENCFF936XBC.bam released s3://encode-public/2016/07/18/5d7c0be2-ea28-4cb3-851f-f290e57e737a/ENCFF936XBC.bam ENCODE3 mm10 archived ENCFF248KLP bam bam unfiltered alignments mm10 ENCSR465WTL Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF246LOG/, /files/ENCFF298XQU/ 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musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF262OPL/, /files/ENCFF309GLL/, /files/ENCFF515ALU/ 2613205883 ENCODE Processing Pipeline 716f6c264e14e6610a72d59bee8efe42 https://www.encodeproject.org/files/ENCFF620AXJ/@@download/ENCFF620AXJ.bam released s3://encode-public/2020/10/08/45b5e108-87af-47b0-b126-5267530dbe04/ENCFF620AXJ.bam ENCODE4 v1.5.1 mm10 released ENCFF142KSC tagAlign tagAlign alignments hg19 ENCSR879FMB Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172581/ 148896581 Anshul Kundaje, Stanford e36c57c2ee129d6d605995e504a10f6b https://www.encodeproject.org/files/ENCFF142KSC/@@download/ENCFF142KSC.tagAlign.gz archived s3://encode-public/2016/02/11/6f3a7c56-bec7-481d-80a1-1b489f69b79d/ENCFF142KSC.tagAlign.gz Lab custom hg19 archived ENCFF052YCU bam bam redacted unfiltered alignments GRCh38 ENCSR879FMB Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF047HVQ/, /files/ENCFF643CGH/ 302890648 ENCODE Processing Pipeline 94e89eac2143e9eb3ecd4d70657a826e https://www.encodeproject.org/files/ENCFF052YCU/@@download/ENCFF052YCU.bam released s3://encode-public/2017/11/09/67f4a330-fcb1-4403-916d-68d8256896a3/ENCFF052YCU.bam ENCODE3 GRCh38 archived ENCFF448ZQW bam bam redacted alignments GRCh38 ENCSR879FMB Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF047HVQ/, /files/ENCFF643CGH/ 239537662 ENCODE Processing Pipeline 1091a904fcc2a47b4edec51c03ca97b2 https://www.encodeproject.org/files/ENCFF448ZQW/@@download/ENCFF448ZQW.bam released s3://encode-public/2017/11/09/22133b9a-99f5-49ef-84fd-2cead2ca13d2/ENCFF448ZQW.bam ENCODE3 GRCh38 archived ENCFF029RDE bam bam redacted unfiltered alignments hg19 ENCSR879FMB Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF047HVQ/, /files/ENCFF807MUK/ 297851149 ENCODE Processing Pipeline c825ead514a428370467de82e135bc73 https://www.encodeproject.org/files/ENCFF029RDE/@@download/ENCFF029RDE.bam released s3://encode-public/2018/01/20/3756cca8-27f4-4357-9ad3-c08e2893552b/ENCFF029RDE.bam ENCODE3 hg19 archived ENCFF123YVZ bam bam redacted alignments hg19 ENCSR879FMB Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF047HVQ/, /files/ENCFF807MUK/ 239242730 ENCODE Processing Pipeline 82d8785c5aaf3adc9988c5dc37e35d2e https://www.encodeproject.org/files/ENCFF123YVZ/@@download/ENCFF123YVZ.bam released s3://encode-public/2018/01/20/fbc4a306-14d4-4dd2-99f6-ea3307b4a6fc/ENCFF123YVZ.bam ENCODE3 hg19 archived ENCFF286UXE bam bam redacted alignments GRCh38 ENCSR879FMB Control ChIP-seq /human-donors/ENCDO030VWZ/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF167PMY/ 1451962104 ENCODE Processing Pipeline c308984ce3555c3ac44e956b1977631d https://www.encodeproject.org/files/ENCFF286UXE/@@download/ENCFF286UXE.bam released s3://encode-public/2021/01/28/66b455c0-c986-4e93-b699-751cedb3271a/ENCFF286UXE.bam ENCODE4 v1.7.0 GRCh38 released ENCFF931GEH fastq fastq reads ENCSR496OMO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF988GJO/ 1154834752 Michael Snyder, Stanford 27193a14af23396698ddedc812431eb6 SRA:SRR6213876 https://www.encodeproject.org/files/ENCFF931GEH/@@download/ENCFF931GEH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/0d241b00-334f-403c-aba2-6366073176fc/ENCFF931GEH.fastq.gz low read depth ENCFF988GJO fastq fastq reads ENCSR496OMO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue 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archived low read depth ENCFF016BGY bam bam alignments hg19 ENCSR496OMO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF988GJO/, /files/ENCFF807MUK/, /files/ENCFF931GEH/ 2345709377 ENCODE Processing Pipeline a8744d2eba4aaad3a44c1f0f8c6152cf https://www.encodeproject.org/files/ENCFF016BGY/@@download/ENCFF016BGY.bam released s3://encode-public/2016/12/06/ec1f358c-59ce-4ff4-a9ca-f6848fb2357b/ENCFF016BGY.bam ENCODE3 hg19 archived low read depth ENCFF095ONU bam bam unfiltered alignments GRCh38 ENCSR496OMO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF931GEH/, /files/ENCFF988GJO/ 2692179064 ENCODE Processing Pipeline 4eb64924c5be7aae8224fd0306dbfd05 https://www.encodeproject.org/files/ENCFF095ONU/@@download/ENCFF095ONU.bam released 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https://www.encodeproject.org/files/ENCFF245VNV/@@download/ENCFF245VNV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/1133e1d1-e99c-4497-bfb4-36e6f0f7570e/ENCFF245VNV.fastq.gz ENCFF148HHK fastq fastq reads ENCSR247XFQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1407917992 Bradley Bernstein, Broad 57bbe582aabf9684b5a45d9c01191394 SRA:SRR5331470 https://www.encodeproject.org/files/ENCFF148HHK/@@download/ENCFF148HHK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/a95478de-6037-4b97-ae01-3a714804068c/ENCFF148HHK.fastq.gz ENCFF636AYA bam bam alignments GRCh38 ENCSR247XFQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF245VNV/, /files/ENCFF643CGH/, /files/ENCFF148HHK/ 2341225936 ENCODE Processing Pipeline 16062f070d2abaa971b435db7813fb41 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archived low read depth ENCFF927ZZQ bam bam alignments hg19 ENCSR882VRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF255HDL/ 782721182 ENCODE Processing Pipeline 7b11ee00aa3a982ee666253594dfd527 https://www.encodeproject.org/files/ENCFF927ZZQ/@@download/ENCFF927ZZQ.bam released 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/human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF155YWF/, /files/ENCFF227FJX/, /files/ENCFF807MUK/ 4606899163 ENCODE Processing Pipeline fa5b42a5967f8cbbfb5f8108f58a55a3 https://www.encodeproject.org/files/ENCFF632RHR/@@download/ENCFF632RHR.bam released s3://encode-public/2017/02/02/59f2a4a6-733d-4d77-a9cd-a484ab45fbd0/ENCFF632RHR.bam ENCODE3 hg19 archived ENCFF218RTJ bam bam alignments hg19 ENCSR810YKX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF155YWF/, /files/ENCFF227FJX/, /files/ENCFF807MUK/ 2980920981 ENCODE Processing Pipeline ae24d2040e14a0394eec27671b88eb8a https://www.encodeproject.org/files/ENCFF218RTJ/@@download/ENCFF218RTJ.bam released s3://encode-public/2017/02/02/64f91a24-e4ac-4fdb-b546-53d9afa12a8f/ENCFF218RTJ.bam ENCODE3 hg19 archived ENCFF355XJX bam bam unfiltered alignments GRCh38 ENCSR810YKX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF155YWF/, /files/ENCFF227FJX/, /files/ENCFF643CGH/ 4625956669 ENCODE Processing Pipeline 8b1797237de3381fd15084786515561f https://www.encodeproject.org/files/ENCFF355XJX/@@download/ENCFF355XJX.bam released s3://encode-public/2017/02/02/22ecb64f-ad6d-4851-9a75-c90eeec3e9b6/ENCFF355XJX.bam ENCODE3 GRCh38 archived ENCFF369ZJF bam bam alignments GRCh38 ENCSR810YKX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF155YWF/, /files/ENCFF227FJX/, /files/ENCFF643CGH/ 2984996430 ENCODE Processing Pipeline a579c023b8b98dbf3375bcacb7c30f49 https://www.encodeproject.org/files/ENCFF369ZJF/@@download/ENCFF369ZJF.bam released s3://encode-public/2017/02/02/f35ab6d6-b31e-41ca-93bd-144a5d213a5e/ENCFF369ZJF.bam ENCODE3 GRCh38 archived ENCFF440YQI bam bam alignments GRCh38 ENCSR810YKX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF155YWF/, /files/ENCFF227FJX/ 2798432396 ENCODE Processing Pipeline 1b338cc4ca72bb794511780b53322574 https://www.encodeproject.org/files/ENCFF440YQI/@@download/ENCFF440YQI.bam released s3://encode-public/2020/10/28/27237a7a-ed69-4d26-9e6e-3c1d20bb6901/ENCFF440YQI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF224JHN bam bam unfiltered alignments GRCh38 ENCSR810YKX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF155YWF/, /files/ENCFF227FJX/ 4718009719 ENCODE Processing Pipeline 0bc20400e14aa21cd8180b3988bc408a https://www.encodeproject.org/files/ENCFF224JHN/@@download/ENCFF224JHN.bam released s3://encode-public/2020/10/28/8eb7e8a5-e41f-421b-a2ff-44cbebdc61f7/ENCFF224JHN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF842XPY bam bam redacted unfiltered alignments GRCh38 ENCSR570YPW Control ChIP-seq /human-donors/ENCDO622KQK/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF782XZV/ 578611907 ENCODE Processing Pipeline 287f6c4c52f72a4eafe59bfb3576100d https://www.encodeproject.org/files/ENCFF842XPY/@@download/ENCFF842XPY.bam released s3://encode-public/2018/01/18/174797bc-8050-4a4f-b913-e6efb56a3868/ENCFF842XPY.bam ENCODE3 GRCh38 archived low read length ENCFF976PAI bam bam redacted alignments GRCh38 ENCSR570YPW Control ChIP-seq /human-donors/ENCDO622KQK/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF782XZV/ 355661749 ENCODE Processing Pipeline 1c86e7714e895f6705192d1b834a377f https://www.encodeproject.org/files/ENCFF976PAI/@@download/ENCFF976PAI.bam released s3://encode-public/2018/01/18/4108027a-45a7-4acf-8bc8-59d82f7dce94/ENCFF976PAI.bam ENCODE3 GRCh38 archived low read length ENCFF106ZMH bam bam redacted unfiltered alignments hg19 ENCSR570YPW Control ChIP-seq /human-donors/ENCDO622KQK/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF782XZV/ 571666285 ENCODE Processing Pipeline 7b5790bbf09bf93bd4c9d3096b91718c https://www.encodeproject.org/files/ENCFF106ZMH/@@download/ENCFF106ZMH.bam released s3://encode-public/2018/01/19/04f91145-254d-4191-9e6f-806531a07b3f/ENCFF106ZMH.bam ENCODE3 hg19 archived low read length ENCFF646OEL bam bam redacted alignments hg19 ENCSR570YPW Control ChIP-seq /human-donors/ENCDO622KQK/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF782XZV/ 355568182 ENCODE Processing Pipeline 5b7e66678f1b665b30d48514be603477 https://www.encodeproject.org/files/ENCFF646OEL/@@download/ENCFF646OEL.bam released s3://encode-public/2018/01/19/8e411b7f-5df4-44b0-8f36-bdb2eefb1e22/ENCFF646OEL.bam ENCODE3 hg19 archived low read length ENCFF654MBQ bam bam redacted alignments GRCh38 ENCSR570YPW Control ChIP-seq /human-donors/ENCDO622KQK/ UBERON:0014455 subcutaneous abdominal adipose tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF782XZV/, /files/ENCFF110MCL/ 1301467069 ENCODE Processing Pipeline c874c3eebc70a1d08a5f055ab0d4c5e3 https://www.encodeproject.org/files/ENCFF654MBQ/@@download/ENCFF654MBQ.bam released s3://encode-public/2021/01/27/7a7466a8-db6c-49e1-8b40-e8b03b1eebd1/ENCFF654MBQ.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF081DKI fastq fastq reads ENCSR772QGN Control ChIP-seq /fly-donors/ENCDO435NOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35684/'], '@type': ['Target', 'Item'], 'name': 'CG1602-dmelanogaster', 'label': 'CG1602', '@id': '/targets/CG1602-dmelanogaster/', 'title': 'CG1602 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1a08ddf7-6601-4049-bd7d-4facff7a6989', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 303823160 Kevin White, UChicago b2e0e928b8aba7dcc146dc183cd37388 https://www.encodeproject.org/files/ENCFF081DKI/@@download/ENCFF081DKI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/f4f7f0d6-4076-4270-a817-47268939bc8b/ENCFF081DKI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF696PZQ bam bam alignments dm3 ENCSR772QGN Control ChIP-seq /fly-donors/ENCDO435NOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35684/'], '@type': ['Target', 'Item'], 'name': 'CG1602-dmelanogaster', 'label': 'CG1602', '@id': '/targets/CG1602-dmelanogaster/', 'title': 'CG1602 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1a08ddf7-6601-4049-bd7d-4facff7a6989', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF081DKI/ 371389305 Kevin White, UChicago 26f4d41d3ef38e6e7d112dcc5c09cb78 https://www.encodeproject.org/files/ENCFF696PZQ/@@download/ENCFF696PZQ.bam released s3://encode-public/2016/04/10/03a95ffc-d5c9-4429-abf7-9615cbf03be5/ENCFF696PZQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF894HPR bigWig bigWig signal of unique reads dm3 ENCSR772QGN Control ChIP-seq /fly-donors/ENCDO435NOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35684/'], '@type': ['Target', 'Item'], 'name': 'CG1602-dmelanogaster', 'label': 'CG1602', '@id': '/targets/CG1602-dmelanogaster/', 'title': 'CG1602 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1a08ddf7-6601-4049-bd7d-4facff7a6989', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF696PZQ/ 15178827 Kevin White, UChicago 9989590dcc3be9124bf2b7d9358a4e7d https://www.encodeproject.org/files/ENCFF894HPR/@@download/ENCFF894HPR.bigWig released s3://encode-public/2016/04/11/8fb1e379-71da-4e8b-bd09-0cca5fd96031/ENCFF894HPR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF207BAE bigWig bigWig read-depth normalized signal dm3 ENCSR772QGN Control ChIP-seq /fly-donors/ENCDO435NOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35684/'], '@type': ['Target', 'Item'], 'name': 'CG1602-dmelanogaster', 'label': 'CG1602', '@id': '/targets/CG1602-dmelanogaster/', 'title': 'CG1602 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1a08ddf7-6601-4049-bd7d-4facff7a6989', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF696PZQ/ 15235325 Kevin White, UChicago 3198285f254cb144ba2ccf113f6e337f https://www.encodeproject.org/files/ENCFF207BAE/@@download/ENCFF207BAE.bigWig released s3://encode-public/2016/04/11/75894815-df2c-4727-95c5-6557eac5da9a/ENCFF207BAE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF573MGE bam bam alignments dm6 ENCSR772QGN Control ChIP-seq /fly-donors/ENCDO435NOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35684/'], '@type': ['Target', 'Item'], 'name': 'CG1602-dmelanogaster', 'label': 'CG1602', '@id': '/targets/CG1602-dmelanogaster/', 'title': 'CG1602 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1a08ddf7-6601-4049-bd7d-4facff7a6989', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF081DKI/ 369747549 Kevin White, UChicago 6bcf41c0ca41384641f6b338f4357716 https://www.encodeproject.org/files/ENCFF573MGE/@@download/ENCFF573MGE.bam released s3://encode-public/2016/04/20/bdbd5e49-ad5a-49c3-969a-fcb19379961d/ENCFF573MGE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF279YRK bigWig bigWig read-depth normalized signal dm6 ENCSR772QGN Control ChIP-seq /fly-donors/ENCDO435NOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35684/'], '@type': ['Target', 'Item'], 'name': 'CG1602-dmelanogaster', 'label': 'CG1602', '@id': '/targets/CG1602-dmelanogaster/', 'title': 'CG1602 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1a08ddf7-6601-4049-bd7d-4facff7a6989', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF573MGE/ 17353369 Kevin White, UChicago 2e03b821a7f5d9ebdc96ddb7cd3aefef https://www.encodeproject.org/files/ENCFF279YRK/@@download/ENCFF279YRK.bigWig released s3://encode-public/2016/06/20/adfbd0fc-2829-45f9-b1fc-c440e186bb3c/ENCFF279YRK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF965YPR bigWig bigWig signal of unique reads dm6 ENCSR772QGN Control ChIP-seq /fly-donors/ENCDO435NOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35684/'], '@type': ['Target', 'Item'], 'name': 'CG1602-dmelanogaster', 'label': 'CG1602', '@id': '/targets/CG1602-dmelanogaster/', 'title': 'CG1602 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1a08ddf7-6601-4049-bd7d-4facff7a6989', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF573MGE/ 17257582 Kevin White, UChicago 4bdfd7cdc08f6174f6628153724e18c2 https://www.encodeproject.org/files/ENCFF965YPR/@@download/ENCFF965YPR.bigWig released s3://encode-public/2016/06/20/a69b8df1-4e1d-4b4c-ba8e-54611eb01ec3/ENCFF965YPR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF676APD fastq fastq reads ENCSR290RGE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23414/'], '@type': ['Target', 'Item'], 'name': 'ZFPM2-human', 'label': 'ZFPM2', '@id': '/targets/ZFPM2-human/', 'title': 'ZFPM2 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '9aa7d661-788a-49cb-b672-277c62f77329', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF614VTR/ 2294802287 Michael Snyder, Stanford b27a3ef4871ab831a26955537399cefd SRA:SRR14841517 https://www.encodeproject.org/files/ENCFF676APD/@@download/ENCFF676APD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/36b44751-1972-478e-be02-496d4ae5384f/ENCFF676APD.fastq.gz not compliant biosample characterization ENCFF614VTR fastq fastq reads ENCSR290RGE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23414/'], '@type': ['Target', 'Item'], 'name': 'ZFPM2-human', 'label': 'ZFPM2', '@id': '/targets/ZFPM2-human/', 'title': 'ZFPM2 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '9aa7d661-788a-49cb-b672-277c62f77329', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF676APD/ 2628704330 Michael Snyder, Stanford d0b7ed7c881ff9cfa48b027d72890198 SRA:SRR14841517 https://www.encodeproject.org/files/ENCFF614VTR/@@download/ENCFF614VTR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/c95ad772-1c5e-4259-93e5-5fd3466c95f8/ENCFF614VTR.fastq.gz not compliant biosample characterization ENCFF066SSU bam bam unfiltered alignments GRCh38 ENCSR290RGE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23414/'], '@type': ['Target', 'Item'], 'name': 'ZFPM2-human', 'label': 'ZFPM2', '@id': '/targets/ZFPM2-human/', 'title': 'ZFPM2 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '9aa7d661-788a-49cb-b672-277c62f77329', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF614VTR/, /files/ENCFF110MCL/, /files/ENCFF676APD/ 5051764555 ENCODE Processing Pipeline 4e42e7a0fecce2c7908a235c9a604dbf https://www.encodeproject.org/files/ENCFF066SSU/@@download/ENCFF066SSU.bam released s3://encode-public/2020/06/24/26628a6f-1fb6-49c9-80b5-61b8201a6675/ENCFF066SSU.bam ENCODE4 v1.4.0 GRCh38 released not compliant biosample characterization ENCFF631ALI bam bam alignments GRCh38 ENCSR290RGE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23414/'], '@type': ['Target', 'Item'], 'name': 'ZFPM2-human', 'label': 'ZFPM2', '@id': '/targets/ZFPM2-human/', 'title': 'ZFPM2 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '9aa7d661-788a-49cb-b672-277c62f77329', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF614VTR/, /files/ENCFF110MCL/, /files/ENCFF676APD/ 3933019338 ENCODE Processing Pipeline be3fbcf19e00077d046989f94a89970b https://www.encodeproject.org/files/ENCFF631ALI/@@download/ENCFF631ALI.bam released s3://encode-public/2020/06/24/2d4ebc72-92b4-426f-a16d-ef48a99195e7/ENCFF631ALI.bam ENCODE4 v1.4.0 GRCh38 released not compliant biosample characterization ENCFF831IMA fastq fastq reads ENCSR543PPU Control ChIP-seq /fly-donors/ENCDO635YHH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40835/'], '@type': ['Target', 'Item'], 'name': 'Antp-dmelanogaster', 'label': 'Antp', '@id': '/targets/Antp-dmelanogaster/', 'title': 'Antp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50d4c3fc-4e88-491e-9afd-232b67047e7a', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 913202396 Kevin White, UChicago d5c43e8a8de8b6c5dec68bb8176ea61e https://www.encodeproject.org/files/ENCFF831IMA/@@download/ENCFF831IMA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/bc1a7b72-ba22-49cf-aeca-c21ce5b2a688/ENCFF831IMA.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF801DTN bam bam alignments dm3 ENCSR543PPU Control ChIP-seq /fly-donors/ENCDO635YHH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40835/'], '@type': ['Target', 'Item'], 'name': 'Antp-dmelanogaster', 'label': 'Antp', '@id': '/targets/Antp-dmelanogaster/', 'title': 'Antp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50d4c3fc-4e88-491e-9afd-232b67047e7a', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF831IMA/ 1352807934 Kevin White, UChicago 1bb9208f731d37f0a8d730b3e9e15a9c https://www.encodeproject.org/files/ENCFF801DTN/@@download/ENCFF801DTN.bam released s3://encode-public/2015/08/03/53d80732-0f4c-4f63-87f8-fdbe694143b5/ENCFF801DTN.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF226DIR bigWig bigWig read-depth normalized signal dm3 ENCSR543PPU Control ChIP-seq /fly-donors/ENCDO635YHH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40835/'], '@type': ['Target', 'Item'], 'name': 'Antp-dmelanogaster', 'label': 'Antp', '@id': '/targets/Antp-dmelanogaster/', 'title': 'Antp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50d4c3fc-4e88-491e-9afd-232b67047e7a', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF801DTN/ 15513753 Kevin White, UChicago e43863bb7bcdcc87bf1a2d294ba2ca20 https://www.encodeproject.org/files/ENCFF226DIR/@@download/ENCFF226DIR.bigWig released s3://encode-public/2015/10/06/28a09460-2d0d-424b-8581-0888d306c58a/ENCFF226DIR.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF699FYO bigWig bigWig signal of unique reads dm3 ENCSR543PPU Control ChIP-seq /fly-donors/ENCDO635YHH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40835/'], '@type': ['Target', 'Item'], 'name': 'Antp-dmelanogaster', 'label': 'Antp', '@id': '/targets/Antp-dmelanogaster/', 'title': 'Antp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50d4c3fc-4e88-491e-9afd-232b67047e7a', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF801DTN/ 15478053 Kevin White, UChicago 2dc0c2bc1f9c9096e73e469c89ce94f9 https://www.encodeproject.org/files/ENCFF699FYO/@@download/ENCFF699FYO.bigWig released s3://encode-public/2015/10/06/0fcbfb09-4433-47b9-9c88-b5cf71359577/ENCFF699FYO.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF677RAM bam bam alignments dm6 ENCSR543PPU Control ChIP-seq /fly-donors/ENCDO635YHH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40835/'], '@type': ['Target', 'Item'], 'name': 'Antp-dmelanogaster', 'label': 'Antp', '@id': '/targets/Antp-dmelanogaster/', 'title': 'Antp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50d4c3fc-4e88-491e-9afd-232b67047e7a', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF831IMA/ 1348969675 Kevin White, UChicago 44efff3592940d5082634161662f31ec https://www.encodeproject.org/files/ENCFF677RAM/@@download/ENCFF677RAM.bam released s3://encode-public/2016/04/20/a076822e-75cc-4b10-9049-99d6a02e484b/ENCFF677RAM.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF681PIA bigWig bigWig signal of unique reads dm6 ENCSR543PPU Control ChIP-seq /fly-donors/ENCDO635YHH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40835/'], '@type': ['Target', 'Item'], 'name': 'Antp-dmelanogaster', 'label': 'Antp', '@id': '/targets/Antp-dmelanogaster/', 'title': 'Antp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50d4c3fc-4e88-491e-9afd-232b67047e7a', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF677RAM/ 17549405 Kevin White, UChicago 83eb267ffcca348e37f3764dcfaee0e6 https://www.encodeproject.org/files/ENCFF681PIA/@@download/ENCFF681PIA.bigWig released s3://encode-public/2016/06/21/65349f62-a455-4cff-a030-a283f222207c/ENCFF681PIA.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF231LGF bigWig bigWig read-depth normalized signal dm6 ENCSR543PPU Control ChIP-seq /fly-donors/ENCDO635YHH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40835/'], '@type': ['Target', 'Item'], 'name': 'Antp-dmelanogaster', 'label': 'Antp', '@id': '/targets/Antp-dmelanogaster/', 'title': 'Antp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50d4c3fc-4e88-491e-9afd-232b67047e7a', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF677RAM/ 17622782 Kevin White, UChicago dd7412ec87cb089d949deff80591f787 https://www.encodeproject.org/files/ENCFF231LGF/@@download/ENCFF231LGF.bigWig released s3://encode-public/2016/06/21/ecfbce91-910e-4da1-b787-8d01022da133/ENCFF231LGF.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF444LOF fastq fastq reads ENCSR624TOZ Control ChIP-seq /fly-donors/ENCDO997ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34881/'], '@type': ['Target', 'Item'], 'name': 'Su(H)-dmelanogaster', 'label': 'Su(H)', '@id': '/targets/Su(H)-dmelanogaster/', 'title': 'Su(H) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6036111a-be83-44db-bee9-dd14ff26086a', 'status': 'released'} dm3 2L 15037696 15058323 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1012175596 Kevin White, UChicago f344383690fb4532d0d678fdb1cda80d https://www.encodeproject.org/files/ENCFF444LOF/@@download/ENCFF444LOF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f371c1bf-f83d-4eb8-915f-c68cdf5a4a2f/ENCFF444LOF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF672WIZ bam bam alignments dm3 ENCSR624TOZ Control ChIP-seq /fly-donors/ENCDO997ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34881/'], '@type': ['Target', 'Item'], 'name': 'Su(H)-dmelanogaster', 'label': 'Su(H)', '@id': '/targets/Su(H)-dmelanogaster/', 'title': 'Su(H) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6036111a-be83-44db-bee9-dd14ff26086a', 'status': 'released'} dm3 2L 15037696 15058323 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF444LOF/ 1473932373 Kevin White, UChicago de1ab2ca1452595d5cf1d0281eae5e0e https://www.encodeproject.org/files/ENCFF672WIZ/@@download/ENCFF672WIZ.bam released s3://encode-public/2015/08/03/46798590-596f-4808-9524-793a733b7025/ENCFF672WIZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF081EGQ bigWig bigWig read-depth normalized signal dm3 ENCSR624TOZ Control ChIP-seq /fly-donors/ENCDO997ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34881/'], '@type': ['Target', 'Item'], 'name': 'Su(H)-dmelanogaster', 'label': 'Su(H)', '@id': '/targets/Su(H)-dmelanogaster/', 'title': 'Su(H) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6036111a-be83-44db-bee9-dd14ff26086a', 'status': 'released'} dm3 2L 15037696 15058323 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF672WIZ/ 15482748 Kevin White, UChicago 921068f9985b0b663ecd535dab2edd7c https://www.encodeproject.org/files/ENCFF081EGQ/@@download/ENCFF081EGQ.bigWig released s3://encode-public/2015/10/06/004d5835-c0ab-4925-9e45-45294d9d1675/ENCFF081EGQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF406JPY bigWig bigWig signal of unique reads dm3 ENCSR624TOZ Control ChIP-seq /fly-donors/ENCDO997ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34881/'], '@type': ['Target', 'Item'], 'name': 'Su(H)-dmelanogaster', 'label': 'Su(H)', '@id': '/targets/Su(H)-dmelanogaster/', 'title': 'Su(H) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6036111a-be83-44db-bee9-dd14ff26086a', 'status': 'released'} dm3 2L 15037696 15058323 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF672WIZ/ 15464716 Kevin White, UChicago 72bdf75f8a5318028241fa408dca710f https://www.encodeproject.org/files/ENCFF406JPY/@@download/ENCFF406JPY.bigWig released s3://encode-public/2015/10/06/67cb38b5-91fb-46ec-84da-1bfad574b1ff/ENCFF406JPY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF249CZK bam bam alignments dm6 ENCSR624TOZ Control ChIP-seq /fly-donors/ENCDO997ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34881/'], '@type': ['Target', 'Item'], 'name': 'Su(H)-dmelanogaster', 'label': 'Su(H)', '@id': '/targets/Su(H)-dmelanogaster/', 'title': 'Su(H) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6036111a-be83-44db-bee9-dd14ff26086a', 'status': 'released'} dm3 2L 15037696 15058323 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF444LOF/ 1467811496 Kevin White, UChicago c64b1ca963130c02cf55a2f53b7d61ee https://www.encodeproject.org/files/ENCFF249CZK/@@download/ENCFF249CZK.bam released s3://encode-public/2016/04/22/c2bed289-e76c-4f81-b437-2714ad7938c4/ENCFF249CZK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF603EPC bigWig bigWig signal of unique reads dm6 ENCSR624TOZ Control ChIP-seq /fly-donors/ENCDO997ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34881/'], '@type': ['Target', 'Item'], 'name': 'Su(H)-dmelanogaster', 'label': 'Su(H)', '@id': '/targets/Su(H)-dmelanogaster/', 'title': 'Su(H) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6036111a-be83-44db-bee9-dd14ff26086a', 'status': 'released'} dm3 2L 15037696 15058323 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF249CZK/ 17558088 Kevin White, UChicago f6bd5d3d5e36ced460659171dcbafd5a https://www.encodeproject.org/files/ENCFF603EPC/@@download/ENCFF603EPC.bigWig released s3://encode-public/2016/06/20/b778a541-404f-43af-bd07-fac0daf8579a/ENCFF603EPC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF414IWF bigWig bigWig read-depth normalized signal dm6 ENCSR624TOZ Control ChIP-seq /fly-donors/ENCDO997ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34881/'], '@type': ['Target', 'Item'], 'name': 'Su(H)-dmelanogaster', 'label': 'Su(H)', '@id': '/targets/Su(H)-dmelanogaster/', 'title': 'Su(H) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6036111a-be83-44db-bee9-dd14ff26086a', 'status': 'released'} dm3 2L 15037696 15058323 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF249CZK/ 17600081 Kevin White, UChicago 75710a705c5a82bd82426238b824b976 https://www.encodeproject.org/files/ENCFF414IWF/@@download/ENCFF414IWF.bigWig released s3://encode-public/2016/06/20/f7d9b971-9757-4669-b511-13fd5e10da3b/ENCFF414IWF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF904KFS tagAlign tagAlign alignments hg19 ENCSR585UEE Control ChIP-seq /human-donors/ENCDO688UPE/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172687/ 153540282 Anshul Kundaje, Stanford ee6fc546dae2542afda4b14ed9c1a32c https://www.encodeproject.org/files/ENCFF904KFS/@@download/ENCFF904KFS.tagAlign.gz archived s3://encode-public/2016/03/30/0b0167c8-f6b5-4383-907a-c420b1619f9d/ENCFF904KFS.tagAlign.gz Lab custom hg19 archived ENCFF386MAX bam bam redacted alignments GRCh38 ENCSR585UEE Control ChIP-seq /human-donors/ENCDO688UPE/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF162QPX/, /files/ENCFF643CGH/ 263043231 ENCODE Processing Pipeline cc0c9fe6c30b8613a0ca82f143222bb6 https://www.encodeproject.org/files/ENCFF386MAX/@@download/ENCFF386MAX.bam released s3://encode-public/2017/11/09/25054813-5442-4d53-9838-6e6a9c5e46ef/ENCFF386MAX.bam ENCODE3 GRCh38 archived ENCFF209LTY bam bam redacted unfiltered alignments GRCh38 ENCSR585UEE Control ChIP-seq /human-donors/ENCDO688UPE/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF162QPX/, /files/ENCFF643CGH/ 317737941 ENCODE Processing Pipeline 1325b0955856ff9af05178ac83f6b501 https://www.encodeproject.org/files/ENCFF209LTY/@@download/ENCFF209LTY.bam released s3://encode-public/2017/11/09/4576848f-ff9f-4cab-9ced-348ddb4717e3/ENCFF209LTY.bam ENCODE3 GRCh38 archived ENCFF326HNN bam bam redacted unfiltered alignments hg19 ENCSR585UEE Control ChIP-seq /human-donors/ENCDO688UPE/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF162QPX/, /files/ENCFF807MUK/ 311999514 ENCODE Processing Pipeline 95a0f99549a009e762e6856568a12a60 https://www.encodeproject.org/files/ENCFF326HNN/@@download/ENCFF326HNN.bam released s3://encode-public/2018/01/20/87f4e485-e987-44e5-84b3-0d71ad550b4d/ENCFF326HNN.bam ENCODE3 hg19 archived ENCFF056MVA bam bam redacted alignments hg19 ENCSR585UEE Control ChIP-seq /human-donors/ENCDO688UPE/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF162QPX/, /files/ENCFF807MUK/ 262603106 ENCODE Processing Pipeline 8468b39a36c1cc20eb5c2cbe288dda42 https://www.encodeproject.org/files/ENCFF056MVA/@@download/ENCFF056MVA.bam released s3://encode-public/2018/01/20/90cd88da-fd42-4455-aa1c-6d7069e71f50/ENCFF056MVA.bam ENCODE3 hg19 archived ENCFF890DSZ bam bam redacted alignments GRCh38 ENCSR585UEE Control ChIP-seq /human-donors/ENCDO688UPE/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF447HFU/, /files/ENCFF110MCL/ 1607323491 ENCODE Processing Pipeline c3f09312af58b898bdda47c653ee2c58 https://www.encodeproject.org/files/ENCFF890DSZ/@@download/ENCFF890DSZ.bam released s3://encode-public/2021/01/28/9702194d-8f79-4b2d-b60c-4139e420f5e2/ENCFF890DSZ.bam ENCODE4 v1.7.0 GRCh38 released ENCFF383MIL fastq fastq reads ENCSR004EEK Control ChIP-seq /fly-donors/ENCDO183PKR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32994/'], '@type': ['Target', 'Item'], 'name': 'vfl-dmelanogaster', 'label': 'vfl', '@id': '/targets/vfl-dmelanogaster/', 'title': 'vfl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01a6f166-783c-4b75-a86f-0b5d94d13244', 'status': 'released'} dm3 X 19631190 19733593 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 579116775 Kevin White, UChicago 55e807ce4f3a6521c487b222fe4cad6e https://www.encodeproject.org/files/ENCFF383MIL/@@download/ENCFF383MIL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/4a798012-e752-472e-8c97-1aab0bb47003/ENCFF383MIL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF890PSV bam bam alignments dm3 ENCSR004EEK Control ChIP-seq /fly-donors/ENCDO183PKR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32994/'], '@type': ['Target', 'Item'], 'name': 'vfl-dmelanogaster', 'label': 'vfl', '@id': '/targets/vfl-dmelanogaster/', 'title': 'vfl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01a6f166-783c-4b75-a86f-0b5d94d13244', 'status': 'released'} dm3 X 19631190 19733593 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF383MIL/ 861610439 Kevin White, UChicago a6f5d2afff92bb4587fbb1f92abfd94f https://www.encodeproject.org/files/ENCFF890PSV/@@download/ENCFF890PSV.bam released s3://encode-public/2015/08/05/9e3166ba-d1b7-41b9-8e3e-f909c8905d87/ENCFF890PSV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF099VVC bigWig bigWig signal of unique reads dm3 ENCSR004EEK Control ChIP-seq /fly-donors/ENCDO183PKR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32994/'], '@type': ['Target', 'Item'], 'name': 'vfl-dmelanogaster', 'label': 'vfl', '@id': '/targets/vfl-dmelanogaster/', 'title': 'vfl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01a6f166-783c-4b75-a86f-0b5d94d13244', 'status': 'released'} dm3 X 19631190 19733593 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF890PSV/ 15387376 Kevin White, UChicago aeee3d3dd3eff0a82c1a9043ce0d79f7 https://www.encodeproject.org/files/ENCFF099VVC/@@download/ENCFF099VVC.bigWig released s3://encode-public/2015/10/05/e83637ae-9bf0-44f8-9571-b62f98818324/ENCFF099VVC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF782IBG bigWig bigWig read-depth normalized signal dm3 ENCSR004EEK Control ChIP-seq /fly-donors/ENCDO183PKR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32994/'], '@type': ['Target', 'Item'], 'name': 'vfl-dmelanogaster', 'label': 'vfl', '@id': '/targets/vfl-dmelanogaster/', 'title': 'vfl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01a6f166-783c-4b75-a86f-0b5d94d13244', 'status': 'released'} dm3 X 19631190 19733593 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF890PSV/ 15425724 Kevin White, UChicago eca010c2bcf76ace0d30801ab6f4590d https://www.encodeproject.org/files/ENCFF782IBG/@@download/ENCFF782IBG.bigWig released s3://encode-public/2015/10/05/22b39172-bc65-4747-90d0-61afc8a8bbfa/ENCFF782IBG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF143RSG bam bam alignments dm6 ENCSR004EEK Control ChIP-seq /fly-donors/ENCDO183PKR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32994/'], '@type': ['Target', 'Item'], 'name': 'vfl-dmelanogaster', 'label': 'vfl', '@id': '/targets/vfl-dmelanogaster/', 'title': 'vfl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01a6f166-783c-4b75-a86f-0b5d94d13244', 'status': 'released'} dm3 X 19631190 19733593 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF383MIL/ 858127866 Kevin White, UChicago f9cb9fd29d28f8b144182205e793e031 https://www.encodeproject.org/files/ENCFF143RSG/@@download/ENCFF143RSG.bam released s3://encode-public/2016/04/22/d0d8a456-d83d-4825-9162-ec822d2f8948/ENCFF143RSG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF439GDD bigWig bigWig signal of unique reads dm6 ENCSR004EEK Control ChIP-seq /fly-donors/ENCDO183PKR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32994/'], '@type': ['Target', 'Item'], 'name': 'vfl-dmelanogaster', 'label': 'vfl', '@id': '/targets/vfl-dmelanogaster/', 'title': 'vfl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01a6f166-783c-4b75-a86f-0b5d94d13244', 'status': 'released'} dm3 X 19631190 19733593 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF143RSG/ 17470533 Kevin White, UChicago b314f291d69379fe13200a3aea6a4cd2 https://www.encodeproject.org/files/ENCFF439GDD/@@download/ENCFF439GDD.bigWig released s3://encode-public/2016/06/20/667b9bbc-646b-4260-af98-2cd771b58144/ENCFF439GDD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF779DQW bigWig bigWig read-depth normalized signal dm6 ENCSR004EEK Control ChIP-seq /fly-donors/ENCDO183PKR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32994/'], '@type': ['Target', 'Item'], 'name': 'vfl-dmelanogaster', 'label': 'vfl', '@id': '/targets/vfl-dmelanogaster/', 'title': 'vfl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01a6f166-783c-4b75-a86f-0b5d94d13244', 'status': 'released'} dm3 X 19631190 19733593 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF143RSG/ 17517504 Kevin White, UChicago d15855ad4a48dc1107ce182616274bfe https://www.encodeproject.org/files/ENCFF779DQW/@@download/ENCFF779DQW.bigWig released s3://encode-public/2016/06/20/277e17c7-e27a-40d2-b822-2f22605a0d19/ENCFF779DQW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF583TZA fastq fastq reads ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 239436347 Michael Snyder, Stanford c10aa8bd02860c0095f472fb6b677101 https://www.encodeproject.org/files/ENCFF583TZA/@@download/ENCFF583TZA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/9ecebc7c-f9a7-4cd1-9b86-9af638d9034d/ENCFF583TZA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF560PML fastq fastq reads ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 241027222 Michael Snyder, Stanford 01ff5506c81f167c6df11b4aeb50968a https://www.encodeproject.org/files/ENCFF560PML/@@download/ENCFF560PML.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/30a42375-e62d-49b9-946a-479b027b9e9e/ENCFF560PML.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF850IHU bam bam alignments ce10 ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF583TZA/, /files/ENCFF560PML/, /files/ENCFF987UMF/ 624913100 Kevin White, UChicago 901281ca4a2fda2e9381a25fbc72181d https://www.encodeproject.org/files/ENCFF850IHU/@@download/ENCFF850IHU.bam released s3://encode-public/2017/04/27/3c72a443-3001-4998-bbfc-8f4350ee06e6/ENCFF850IHU.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF461DNJ bam bam alignments ce11 ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF583TZA/, /files/ENCFF560PML/, /files/ENCFF586MOL/ 625543422 Kevin White, UChicago 039f3e6ed66fd5ce2d7a74851f4a19bb https://www.encodeproject.org/files/ENCFF461DNJ/@@download/ENCFF461DNJ.bam released s3://encode-public/2017/04/27/576bdb01-a41c-4e98-b2d6-e8d4ec614d58/ENCFF461DNJ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF798EBZ bigWig bigWig read-depth normalized signal ce10 ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF850IHU/ 9999514 Kevin White, UChicago f3e1fd962de96e6f403276cf5e8ceeab https://www.encodeproject.org/files/ENCFF798EBZ/@@download/ENCFF798EBZ.bigWig released s3://encode-public/2017/04/29/ad8ebc45-4997-485c-9da3-a405207936d2/ENCFF798EBZ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF201YOP bigWig bigWig signal of unique reads ce10 ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF850IHU/ 9972090 Kevin White, UChicago 45d890de2e5182d9aa5c9f137eca6d28 https://www.encodeproject.org/files/ENCFF201YOP/@@download/ENCFF201YOP.bigWig released s3://encode-public/2017/04/29/0a3fa5c0-13ae-4a4e-a174-25efd953bf1b/ENCFF201YOP.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF915KMG bigWig bigWig signal of unique reads ce11 ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF461DNJ/ 9966714 Kevin White, UChicago ae63cca3f14cff0f7233d2fae183550b https://www.encodeproject.org/files/ENCFF915KMG/@@download/ENCFF915KMG.bigWig released s3://encode-public/2017/04/29/b4a2c978-0a60-4a12-a0de-8efde2618d70/ENCFF915KMG.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF578HLU bigWig bigWig read-depth normalized signal ce11 ENCSR124OTS Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF461DNJ/ 9995130 Kevin White, UChicago d7fa324fe68bbf01b8f88e9a07fa8826 https://www.encodeproject.org/files/ENCFF578HLU/@@download/ENCFF578HLU.bigWig released s3://encode-public/2017/04/29/7d9d842c-d116-48d9-a2f2-6573763f53ef/ENCFF578HLU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF417JMX fastq fastq reads ENCSR370HQE Control ChIP-seq /fly-donors/ENCDO399QVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40095/'], '@type': ['Target', 'Item'], 'name': 'Max-dmelanogaster', 'label': 'Max', '@id': '/targets/Max-dmelanogaster/', 'title': 'Max (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01642eab-9e69-4ef6-aae4-52991c5c25e6', 'status': 'released'} dm3 3L 19247470 19266224 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 761377595 Kevin White, UChicago 8dc4f3129296817ab65ff128d4100f7d https://www.encodeproject.org/files/ENCFF417JMX/@@download/ENCFF417JMX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/93d0aff2-d418-4d35-ab72-d49705f16965/ENCFF417JMX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF547YHZ bam bam alignments dm3 ENCSR370HQE Control ChIP-seq /fly-donors/ENCDO399QVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40095/'], '@type': ['Target', 'Item'], 'name': 'Max-dmelanogaster', 'label': 'Max', '@id': '/targets/Max-dmelanogaster/', 'title': 'Max (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01642eab-9e69-4ef6-aae4-52991c5c25e6', 'status': 'released'} dm3 3L 19247470 19266224 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF417JMX/ 1122349032 Kevin White, UChicago 7bc2826090a75fc534a4c955117e570a https://www.encodeproject.org/files/ENCFF547YHZ/@@download/ENCFF547YHZ.bam released s3://encode-public/2015/08/03/2768a7e3-7898-4a33-8817-50848e677e1f/ENCFF547YHZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF677IVS bigWig bigWig signal of unique reads dm3 ENCSR370HQE Control ChIP-seq /fly-donors/ENCDO399QVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40095/'], '@type': ['Target', 'Item'], 'name': 'Max-dmelanogaster', 'label': 'Max', '@id': '/targets/Max-dmelanogaster/', 'title': 'Max (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01642eab-9e69-4ef6-aae4-52991c5c25e6', 'status': 'released'} dm3 3L 19247470 19266224 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547YHZ/ 15403629 Kevin White, UChicago 2753ced0744f7858585624c30d18645c https://www.encodeproject.org/files/ENCFF677IVS/@@download/ENCFF677IVS.bigWig released s3://encode-public/2015/10/05/bd19a9c1-23da-40f0-b321-fbb78bbd0433/ENCFF677IVS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF883NSY bigWig bigWig read-depth normalized signal dm3 ENCSR370HQE Control ChIP-seq /fly-donors/ENCDO399QVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40095/'], '@type': ['Target', 'Item'], 'name': 'Max-dmelanogaster', 'label': 'Max', '@id': '/targets/Max-dmelanogaster/', 'title': 'Max (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01642eab-9e69-4ef6-aae4-52991c5c25e6', 'status': 'released'} dm3 3L 19247470 19266224 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547YHZ/ 15410319 Kevin White, UChicago 0d1d339c04ed165830c08d4c8854906d https://www.encodeproject.org/files/ENCFF883NSY/@@download/ENCFF883NSY.bigWig released s3://encode-public/2015/10/05/c649b6c7-dd12-463f-8adb-cc04d0d3d882/ENCFF883NSY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF763CWA bam bam alignments dm6 ENCSR370HQE Control ChIP-seq /fly-donors/ENCDO399QVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40095/'], '@type': ['Target', 'Item'], 'name': 'Max-dmelanogaster', 'label': 'Max', '@id': '/targets/Max-dmelanogaster/', 'title': 'Max (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01642eab-9e69-4ef6-aae4-52991c5c25e6', 'status': 'released'} dm3 3L 19247470 19266224 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF417JMX/ 1116653108 Kevin White, UChicago 7bc95d7725a48e4e3ec19db8d516816c https://www.encodeproject.org/files/ENCFF763CWA/@@download/ENCFF763CWA.bam released s3://encode-public/2016/04/21/44c9e6e5-cd71-4e7d-82e2-dcee9ce336b0/ENCFF763CWA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF955OKL bigWig bigWig read-depth normalized signal dm6 ENCSR370HQE Control ChIP-seq /fly-donors/ENCDO399QVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40095/'], '@type': ['Target', 'Item'], 'name': 'Max-dmelanogaster', 'label': 'Max', '@id': '/targets/Max-dmelanogaster/', 'title': 'Max (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01642eab-9e69-4ef6-aae4-52991c5c25e6', 'status': 'released'} dm3 3L 19247470 19266224 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF763CWA/ 17505941 Kevin White, UChicago 8ca307bb4db8fb8279925d0278e973c3 https://www.encodeproject.org/files/ENCFF955OKL/@@download/ENCFF955OKL.bigWig released s3://encode-public/2016/06/20/be934e10-5993-4424-a4c9-ed7cb011c067/ENCFF955OKL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF730BGS bigWig bigWig signal of unique reads dm6 ENCSR370HQE Control ChIP-seq /fly-donors/ENCDO399QVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40095/'], '@type': ['Target', 'Item'], 'name': 'Max-dmelanogaster', 'label': 'Max', '@id': '/targets/Max-dmelanogaster/', 'title': 'Max (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01642eab-9e69-4ef6-aae4-52991c5c25e6', 'status': 'released'} dm3 3L 19247470 19266224 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF763CWA/ 17491730 Kevin White, UChicago 1238443a10f883ee23bd7fac1c33a678 https://www.encodeproject.org/files/ENCFF730BGS/@@download/ENCFF730BGS.bigWig released s3://encode-public/2016/06/20/041b769b-3329-4a97-8ac8-8f394a3ab1f3/ENCFF730BGS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF972KYU bigWig bigWig read-depth normalized signal dm3 ENCSR691GHG Control ChIP-seq /fly-donors/ENCDO340SHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47080/'], '@type': ['Target', 'Item'], 'name': 'acj6-dmelanogaster', 'label': 'acj6', '@id': '/targets/acj6-dmelanogaster/', 'title': 'acj6 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3541f526-8d2e-4840-abff-481970722533', 'status': 'released'} dm3 X 15219510 15314098 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF348OZQ/ 15135171 Kevin White, UChicago a6ecfe73c19413771c7f701fc4d2e5d8 https://www.encodeproject.org/files/ENCFF972KYU/@@download/ENCFF972KYU.bigWig released s3://encode-public/2015/10/22/a8387358-9490-474a-afc9-67ecf5dd51a3/ENCFF972KYU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF348OZQ bam bam alignments dm3 ENCSR691GHG Control ChIP-seq /fly-donors/ENCDO340SHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47080/'], '@type': ['Target', 'Item'], 'name': 'acj6-dmelanogaster', 'label': 'acj6', '@id': '/targets/acj6-dmelanogaster/', 'title': 'acj6 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3541f526-8d2e-4840-abff-481970722533', 'status': 'released'} dm3 X 15219510 15314098 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF282MXB/ 533363926 Kevin White, UChicago ee4c74878281cd2a031d039d41e7e676 https://www.encodeproject.org/files/ENCFF348OZQ/@@download/ENCFF348OZQ.bam released s3://encode-public/2015/10/22/b2030df5-6c84-4a85-b726-58bbe357fa16/ENCFF348OZQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF787KRJ bigWig bigWig signal of unique reads dm3 ENCSR691GHG Control ChIP-seq /fly-donors/ENCDO340SHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47080/'], '@type': ['Target', 'Item'], 'name': 'acj6-dmelanogaster', 'label': 'acj6', '@id': '/targets/acj6-dmelanogaster/', 'title': 'acj6 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3541f526-8d2e-4840-abff-481970722533', 'status': 'released'} dm3 X 15219510 15314098 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF348OZQ/ 15158412 Kevin White, UChicago 32caa7e0e4e381365b6ebe6f611cb8b0 https://www.encodeproject.org/files/ENCFF787KRJ/@@download/ENCFF787KRJ.bigWig released s3://encode-public/2015/10/22/f551c302-7aaf-4361-b516-da0db1cab833/ENCFF787KRJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF282MXB fastq fastq reads ENCSR691GHG Control ChIP-seq /fly-donors/ENCDO340SHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47080/'], '@type': ['Target', 'Item'], 'name': 'acj6-dmelanogaster', 'label': 'acj6', '@id': '/targets/acj6-dmelanogaster/', 'title': 'acj6 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3541f526-8d2e-4840-abff-481970722533', 'status': 'released'} dm3 X 15219510 15314098 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 440733082 Kevin White, UChicago 9c043719fbe0b590a97043ea5cd82f97 https://www.encodeproject.org/files/ENCFF282MXB/@@download/ENCFF282MXB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/22/8cdcf015-bc76-4a2c-b739-f4271802a42f/ENCFF282MXB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF937FAQ bam bam alignments dm6 ENCSR691GHG Control ChIP-seq /fly-donors/ENCDO340SHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47080/'], '@type': ['Target', 'Item'], 'name': 'acj6-dmelanogaster', 'label': 'acj6', '@id': '/targets/acj6-dmelanogaster/', 'title': 'acj6 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3541f526-8d2e-4840-abff-481970722533', 'status': 'released'} dm3 X 15219510 15314098 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF282MXB/ 531411241 Kevin White, UChicago c52c55a4875045c7b9965b27e5206460 https://www.encodeproject.org/files/ENCFF937FAQ/@@download/ENCFF937FAQ.bam released s3://encode-public/2016/04/20/de53418f-027f-4834-9aab-fac58082a3e9/ENCFF937FAQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF037JUG bigWig bigWig read-depth normalized signal dm6 ENCSR691GHG Control ChIP-seq /fly-donors/ENCDO340SHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47080/'], '@type': ['Target', 'Item'], 'name': 'acj6-dmelanogaster', 'label': 'acj6', '@id': '/targets/acj6-dmelanogaster/', 'title': 'acj6 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3541f526-8d2e-4840-abff-481970722533', 'status': 'released'} dm3 X 15219510 15314098 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF937FAQ/ 17211599 Kevin White, UChicago f8f2ce04bf7f7586c8246cfca7981965 https://www.encodeproject.org/files/ENCFF037JUG/@@download/ENCFF037JUG.bigWig released s3://encode-public/2016/06/21/fc55db84-2a40-4560-84df-c42c5bfcb459/ENCFF037JUG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF760IXO bigWig bigWig signal of unique reads dm6 ENCSR691GHG Control ChIP-seq /fly-donors/ENCDO340SHA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47080/'], '@type': ['Target', 'Item'], 'name': 'acj6-dmelanogaster', 'label': 'acj6', '@id': '/targets/acj6-dmelanogaster/', 'title': 'acj6 (Drosophila melanogaster)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '3541f526-8d2e-4840-abff-481970722533', 'status': 'released'} dm3 X 15219510 15314098 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF937FAQ/ 17262927 Kevin White, UChicago e1ee5ef5ed6347a088d729fd376eae0c https://www.encodeproject.org/files/ENCFF760IXO/@@download/ENCFF760IXO.bigWig released s3://encode-public/2016/06/21/326274cd-3c51-4782-983b-8814a9a74ca8/ENCFF760IXO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF953PQD fastq fastq reads ENCSR828HXJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 single-ended 2929832138 Bradley Bernstein, Broad b783172ca2bf1273835478a47dfa7a3a SRA:SRR5339622 https://www.encodeproject.org/files/ENCFF953PQD/@@download/ENCFF953PQD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/ee2f83c3-4e68-4b52-ba00-b8e6f4ebae58/ENCFF953PQD.fastq.gz ENCFF159PLR bam bam alignments GRCh38 ENCSR828HXJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF953PQD/ 2793763361 ENCODE Processing Pipeline e4d6c57f5cd0688437626bd0b591b86c https://www.encodeproject.org/files/ENCFF159PLR/@@download/ENCFF159PLR.bam released s3://encode-public/2016/04/23/16382a8f-8d07-46c7-9663-d5e261a16c35/ENCFF159PLR.bam ENCODE3 GRCh38 archived ENCFF758TGR bam bam unfiltered alignments GRCh38 ENCSR828HXJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF953PQD/ 3373654004 ENCODE Processing Pipeline be2822cbc2e7cbb89edf277e566db7c0 https://www.encodeproject.org/files/ENCFF758TGR/@@download/ENCFF758TGR.bam released s3://encode-public/2016/05/05/f410e08d-a6c9-4e53-ac55-116d601366f3/ENCFF758TGR.bam ENCODE3 GRCh38 archived ENCFF210VXK bam bam unfiltered alignments hg19 ENCSR828HXJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF953PQD/ 3363915992 ENCODE Processing Pipeline cbbfde88913f2b16017298569f24a0bf https://www.encodeproject.org/files/ENCFF210VXK/@@download/ENCFF210VXK.bam released s3://encode-public/2016/10/26/797e5d7c-f332-4377-8720-518e1298f4b6/ENCFF210VXK.bam ENCODE3 hg19 archived ENCFF515NMM bam bam alignments hg19 ENCSR828HXJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF953PQD/ 2789262917 ENCODE Processing Pipeline 1d8e5e4d857c1175e55fe8bde1e5e0e6 https://www.encodeproject.org/files/ENCFF515NMM/@@download/ENCFF515NMM.bam released s3://encode-public/2016/10/26/41e41870-ef7d-49d4-8f42-65a7b5a377f0/ENCFF515NMM.bam ENCODE3 hg19 archived ENCFF003PKG bam bam unfiltered alignments GRCh38 ENCSR828HXJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF953PQD/ 3409400084 ENCODE Processing Pipeline b0c0f6799cb24ea0207bac8d83ab6dda https://www.encodeproject.org/files/ENCFF003PKG/@@download/ENCFF003PKG.bam released s3://encode-public/2020/08/20/66e7d143-1eb7-49ca-a023-93d5b6076559/ENCFF003PKG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF087ZWK bam bam alignments GRCh38 ENCSR828HXJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-06-30 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF953PQD/ 2869508600 ENCODE Processing Pipeline 4919485e58a506ef77a4b905604955c8 https://www.encodeproject.org/files/ENCFF087ZWK/@@download/ENCFF087ZWK.bam released s3://encode-public/2020/08/20/50c02062-61dc-4e00-a3a8-799e4bfaf356/ENCFF087ZWK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF236PIU fastq fastq reads ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 111560013 Michael Snyder, Stanford 58919db439cbcaa86f1bbffa7bb74112 https://www.encodeproject.org/files/ENCFF236PIU/@@download/ENCFF236PIU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d78d9298-4d13-4425-8cb5-d8ff08e9376c/ENCFF236PIU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF712HQK fastq fastq reads ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 97817657 Michael Snyder, Stanford bd15cf9aea19bffb9c2a87508f606187 https://www.encodeproject.org/files/ENCFF712HQK/@@download/ENCFF712HQK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/54b01d2c-ea22-4623-9e0a-0f1ed754f4b3/ENCFF712HQK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF920OBV fastq fastq reads ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 4 4_1 32 single-ended 43922865 Michael Snyder, Stanford ce68fc78f3734df6a772e54b312e6484 https://www.encodeproject.org/files/ENCFF920OBV/@@download/ENCFF920OBV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ac18aa6e-96d3-4d3d-9b3e-46962c1caf3f/ENCFF920OBV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF374MIC fastq fastq reads ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 5 5_1 32 single-ended 39445757 Michael Snyder, Stanford 2da913e8ceb6f4eda751e9cece58a5a0 https://www.encodeproject.org/files/ENCFF374MIC/@@download/ENCFF374MIC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e2ac6a1e-bfea-44c1-a8ed-c28d53cc7593/ENCFF374MIC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF962QRZ bam bam alignments ce11 ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 1, 2, 4, 5 1_1, 2_1, 4_1, 5_1 32 /files/ENCFF236PIU/, /files/ENCFF712HQK/, /files/ENCFF920OBV/, /files/ENCFF374MIC/, /files/ENCFF586MOL/ 361554724 Kevin White, UChicago 154a933939ea10a336769e723404bcad https://www.encodeproject.org/files/ENCFF962QRZ/@@download/ENCFF962QRZ.bam released s3://encode-public/2017/12/21/19e0b367-0338-40ba-907a-9230ccc41acf/ENCFF962QRZ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF331VUM bigWig bigWig signal of unique reads ce11 ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 1, 2, 4, 5 1_1, 2_1, 4_1, 5_1 /files/ENCFF962QRZ/ 10026592 Kevin White, UChicago 7692fc8eba260af283f930c59f5a4df2 https://www.encodeproject.org/files/ENCFF331VUM/@@download/ENCFF331VUM.bigWig released s3://encode-public/2017/12/21/6e6ea5b4-05b6-4d14-8582-c6853cefeae5/ENCFF331VUM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF850WVM bigWig bigWig read-depth normalized signal ce10 ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 1, 2, 4, 5 1_1, 2_1, 4_1, 5_1 /files/ENCFF972XBY/ 9975346 Kevin White, UChicago 1f2f98be5d70c1248dc343dc74574110 https://www.encodeproject.org/files/ENCFF850WVM/@@download/ENCFF850WVM.bigWig released s3://encode-public/2017/12/21/7ce5aab2-c8cc-4d3f-9f49-56cca0804a1b/ENCFF850WVM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF408ILC bigWig bigWig signal of unique reads ce10 ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 1, 2, 4, 5 1_1, 2_1, 4_1, 5_1 /files/ENCFF972XBY/ 10029465 Kevin White, UChicago 4187846cfbd3e3226e210ff60c014594 https://www.encodeproject.org/files/ENCFF408ILC/@@download/ENCFF408ILC.bigWig released s3://encode-public/2017/12/21/59c6805c-4f76-48f3-a6a1-6590b60765ac/ENCFF408ILC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF972XBY bam bam alignments ce10 ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 1, 2, 4, 5 1_1, 2_1, 4_1, 5_1 32 /files/ENCFF236PIU/, /files/ENCFF712HQK/, /files/ENCFF920OBV/, /files/ENCFF374MIC/, /files/ENCFF987UMF/ 361172849 Kevin White, UChicago 826d8cd80a9508402508a3ae831c881f https://www.encodeproject.org/files/ENCFF972XBY/@@download/ENCFF972XBY.bam released s3://encode-public/2017/12/21/edef3acb-0d12-4e32-a5fe-d05fc41bf2dd/ENCFF972XBY.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF784ZQB bigWig bigWig read-depth normalized signal ce11 ENCSR725FSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-21 modENCODE sonication (generic microtip) 1, 2, 4, 5 1_1, 2_1, 4_1, 5_1 /files/ENCFF962QRZ/ 9972665 Kevin White, UChicago 436da51b9ac67bab56409377c88fa64a https://www.encodeproject.org/files/ENCFF784ZQB/@@download/ENCFF784ZQB.bigWig released s3://encode-public/2017/12/21/6f7ec25f-c510-4c46-9a5f-42831c173daf/ENCFF784ZQB.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF563LVJ fastq fastq reads ENCSR625UIZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55893/'], '@type': ['Target', 'Item'], 'name': 'ZNF395-human', 'label': 'ZNF395', '@id': '/targets/ZNF395-human/', 'title': 'ZNF395 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '629f493a-59ec-4814-9c6c-1815f14b8776', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 401453202 Kevin White, UChicago bed5327a5a7d1340eba57ea72e780969 SRA:SRR10049608 https://www.encodeproject.org/files/ENCFF563LVJ/@@download/ENCFF563LVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF877XOV/ released s3://encode-public/2016/03/14/f4e0b8c8-02e8-43d7-8880-e68bff5a224f/ENCFF563LVJ.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF877XOV fastq fastq reads ENCSR625UIZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55893/'], '@type': ['Target', 'Item'], 'name': 'ZNF395-human', 'label': 'ZNF395', '@id': '/targets/ZNF395-human/', 'title': 'ZNF395 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '629f493a-59ec-4814-9c6c-1815f14b8776', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 589846090 Kevin White, UChicago 3d3e797998b3a6b865733857aac173c6 SRA:SRR10049609 https://www.encodeproject.org/files/ENCFF877XOV/@@download/ENCFF877XOV.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/ released s3://encode-public/2016/03/26/dfd83c5b-9605-47f3-871f-746dd89152cc/ENCFF877XOV.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF079VNU bam bam unfiltered alignments GRCh38 ENCSR625UIZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55893/'], '@type': ['Target', 'Item'], 'name': 'ZNF395-human', 'label': 'ZNF395', '@id': '/targets/ZNF395-human/', 'title': 'ZNF395 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '629f493a-59ec-4814-9c6c-1815f14b8776', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF563LVJ/, /files/ENCFF877XOV/ 1061320101 ENCODE Processing Pipeline 714482ee90faf5385f25d806fef400fa https://www.encodeproject.org/files/ENCFF079VNU/@@download/ENCFF079VNU.bam released s3://encode-public/2016/08/30/9585fc34-b982-4e0c-a152-79789fd19143/ENCFF079VNU.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF791OAY bam bam alignments GRCh38 ENCSR625UIZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo 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EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55893/'], '@type': ['Target', 'Item'], 'name': 'ZNF395-human', 'label': 'ZNF395', '@id': '/targets/ZNF395-human/', 'title': 'ZNF395 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '629f493a-59ec-4814-9c6c-1815f14b8776', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF563LVJ/, /files/ENCFF877XOV/ 1058712627 ENCODE Processing Pipeline 6fe06850ab8c8c030bfd832531f02f12 https://www.encodeproject.org/files/ENCFF659QIG/@@download/ENCFF659QIG.bam released s3://encode-public/2016/08/30/99eb98db-b3fe-4e93-887c-1fd0f0693229/ENCFF659QIG.bam ENCODE3 hg19 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https://www.encodeproject.org/files/ENCFF036ZZC/@@download/ENCFF036ZZC.bigWig archived s3://encode-public/2017/04/29/3458cd62-64eb-4cc0-a1ea-f28ec8c8c543/ENCFF036ZZC.bigWig missing genetic modification characterization, missing biosample characterization ENCFF583KDE bigWig bigWig signal of unique reads ce10 ENCSR283RSJ Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF042TXI/ 10037409 Kevin White, UChicago 0d1c5ddc71cbcaf0251b6eb8fe9b3342 https://www.encodeproject.org/files/ENCFF583KDE/@@download/ENCFF583KDE.bigWig archived s3://encode-public/2017/04/29/8f6f9824-1415-4c40-88eb-1963a0e6effe/ENCFF583KDE.bigWig missing genetic modification characterization, missing biosample characterization ENCFF869WVZ bigWig bigWig signal of unique reads ce11 ENCSR283RSJ Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF544MLZ/ 9991477 Kevin White, UChicago c3cec8ccb3a92d1b54d0fb2e4b9b542f https://www.encodeproject.org/files/ENCFF869WVZ/@@download/ENCFF869WVZ.bigWig released s3://encode-public/2017/04/29/e3998dff-a41e-4f52-a6b6-ddf1cc207ee5/ENCFF869WVZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF526JNR bigWig bigWig read-depth normalized signal ce11 ENCSR283RSJ Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF544MLZ/ 10045922 Kevin White, UChicago 8efc080427b580b449ad48a474b9e460 https://www.encodeproject.org/files/ENCFF526JNR/@@download/ENCFF526JNR.bigWig released s3://encode-public/2017/04/29/89549563-a6ea-45be-bfc7-9901ed8c4eb2/ENCFF526JNR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF292XAK bigWig bigWig signal of unique reads ce10 ENCSR283RSJ Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF193CFX/ 9995416 Kevin White, UChicago 12c3668d25be3caf0b6ce835aac649d2 https://www.encodeproject.org/files/ENCFF292XAK/@@download/ENCFF292XAK.bigWig released s3://encode-public/2017/11/13/805e3256-0a11-4162-8e01-844bd2ae2467/ENCFF292XAK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF193CFX bam bam alignments ce10 ENCSR283RSJ Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF273PZU/, /files/ENCFF647VLG/, /files/ENCFF987UMF/ 581613421 Kevin White, UChicago 305a30ba7c79bf2d36b6a22e73a1824a https://www.encodeproject.org/files/ENCFF193CFX/@@download/ENCFF193CFX.bam released s3://encode-public/2017/11/13/d96e7113-54c3-47e8-a425-07a65fbdee1a/ENCFF193CFX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF840WCI bigWig bigWig read-depth normalized signal ce10 ENCSR283RSJ Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF193CFX/ 10042410 Kevin White, UChicago c44cb7bf9a15506487701d0792c890f9 https://www.encodeproject.org/files/ENCFF840WCI/@@download/ENCFF840WCI.bigWig released s3://encode-public/2017/11/13/5bb55036-5d96-4680-8839-72e9d8fc9fbf/ENCFF840WCI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF997NKJ fastq fastq reads ENCSR546LJI Control ChIP-seq /fly-donors/ENCDO034JNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 716671445 Kevin White, UChicago b9b8907d8f0c150ab1ea0a9169c7a380 https://www.encodeproject.org/files/ENCFF997NKJ/@@download/ENCFF997NKJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/d91de9d4-5245-4474-95f2-bf41bc4006bc/ENCFF997NKJ.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF513ARF bam bam alignments dm3 ENCSR546LJI Control ChIP-seq /fly-donors/ENCDO034JNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF997NKJ/ 1072734121 Kevin White, UChicago 9e22b71ed9c16c170e65c2875b4e36fc https://www.encodeproject.org/files/ENCFF513ARF/@@download/ENCFF513ARF.bam released s3://encode-public/2015/08/03/88af586d-4964-43a9-b395-dbac9677f97a/ENCFF513ARF.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF494WQA bigWig bigWig signal of unique reads dm3 ENCSR546LJI Control ChIP-seq /fly-donors/ENCDO034JNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF513ARF/ 15412868 Kevin White, UChicago 8afe6a82cc719e070bf7911e7203bd92 https://www.encodeproject.org/files/ENCFF494WQA/@@download/ENCFF494WQA.bigWig released s3://encode-public/2015/10/06/9b6ad949-3409-4c69-bda2-41520c35ad60/ENCFF494WQA.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF100JKV bigWig bigWig read-depth normalized signal dm3 ENCSR546LJI Control ChIP-seq /fly-donors/ENCDO034JNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF513ARF/ 15407860 Kevin White, UChicago ed068dc7e85f800fdf21701a7c724739 https://www.encodeproject.org/files/ENCFF100JKV/@@download/ENCFF100JKV.bigWig released s3://encode-public/2015/10/06/d2e1f0b4-7f20-429a-b4c4-8b0a5b0f00da/ENCFF100JKV.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF696CXU bam bam alignments dm6 ENCSR546LJI Control ChIP-seq /fly-donors/ENCDO034JNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF997NKJ/ 1067576566 Kevin White, UChicago ec2d5c980a229ced8eba372c9731fff8 https://www.encodeproject.org/files/ENCFF696CXU/@@download/ENCFF696CXU.bam released s3://encode-public/2016/04/22/c6a86343-8f51-420f-a470-2d89d6e769f9/ENCFF696CXU.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF265RLC bigWig bigWig signal of unique reads dm6 ENCSR546LJI Control ChIP-seq /fly-donors/ENCDO034JNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF696CXU/ 17450163 Kevin White, UChicago f7a483a580dc983d127d66e6adeeb9aa https://www.encodeproject.org/files/ENCFF265RLC/@@download/ENCFF265RLC.bigWig released s3://encode-public/2016/06/21/5752849e-dc56-4b75-b237-71c24fb1c866/ENCFF265RLC.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF889OUS bigWig bigWig read-depth normalized signal dm6 ENCSR546LJI Control ChIP-seq /fly-donors/ENCDO034JNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45588/'], '@type': ['Target', 'Item'], 'name': 'Pdp1-dmelanogaster', 'label': 'Pdp1', '@id': '/targets/Pdp1-dmelanogaster/', 'title': 'Pdp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6db04245-890c-43a6-baa3-960ccc2e82c2', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF696CXU/ 17447973 Kevin White, UChicago c16f7547649cbc34b0c42470dd6b744c https://www.encodeproject.org/files/ENCFF889OUS/@@download/ENCFF889OUS.bigWig released s3://encode-public/2016/06/21/b5b20129-61a2-4c43-8ec0-80dc028b9bf4/ENCFF889OUS.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF808ZOL tagAlign tagAlign alignments hg19 ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF953ZAR/, /files/ENCFF970CAQ/ 244589353 Anshul Kundaje, Stanford 0f670f9c2d334c6d69d5048ffdd9f8b6 https://www.encodeproject.org/files/ENCFF808ZOL/@@download/ENCFF808ZOL.tagAlign.gz archived s3://encode-public/2016/05/02/d9820e10-e155-4165-839a-59278f82f0bc/ENCFF808ZOL.tagAlign.gz Lab custom hg19 archived low read length ENCFF970CAQ fastq fastq reads ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1060727167 Zhiping Weng, UMass b8c24a288f0d49a7d45d725ce04e870f SRA:SRR642535 https://www.encodeproject.org/files/ENCFF970CAQ/@@download/ENCFF970CAQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/88991b2c-ffc2-4a86-abfb-ae6ddb16bb1e/ENCFF970CAQ.fastq.gz low read length ENCFF953ZAR fastq fastq reads ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 721837018 Zhiping Weng, UMass 6de968eff75507f8d08a442d250ae7ae SRA:SRR642534 https://www.encodeproject.org/files/ENCFF953ZAR/@@download/ENCFF953ZAR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/09640447-3a8a-4757-977f-28bfa72e62d1/ENCFF953ZAR.fastq.gz low read length ENCFF548KSZ bam bam unfiltered alignments GRCh38 ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970CAQ/, /files/ENCFF953ZAR/, /files/ENCFF110MCL/ 2172372759 ENCODE Processing Pipeline bb782b296180e8ec1740e10362bed954 https://www.encodeproject.org/files/ENCFF548KSZ/@@download/ENCFF548KSZ.bam released s3://encode-public/2020/10/09/1adf5e45-3781-457c-9ddc-9f0dff7294c4/ENCFF548KSZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF918HYD bam bam unfiltered alignments hg19 ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF970CAQ/, /files/ENCFF953ZAR/ 2222592079 ENCODE Processing Pipeline 41be8c8586045264fd05502d9e5c381a https://www.encodeproject.org/files/ENCFF918HYD/@@download/ENCFF918HYD.bam released s3://encode-public/2016/12/19/934b6f74-d0b8-43c8-b033-24ef4e9a297f/ENCFF918HYD.bam ENCODE3 hg19 archived low read length ENCFF432ESG bam bam unfiltered alignments GRCh38 ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970CAQ/, /files/ENCFF953ZAR/, /files/ENCFF643CGH/ 2237257759 ENCODE Processing Pipeline 140c200bf7e9457ee1153bc8a5ca5f4d https://www.encodeproject.org/files/ENCFF432ESG/@@download/ENCFF432ESG.bam released s3://encode-public/2016/12/19/7e17dbb8-5963-41e0-95be-36d36bea235a/ENCFF432ESG.bam ENCODE3 GRCh38 archived low read length ENCFF448QJX bam bam alignments hg19 ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF970CAQ/, /files/ENCFF953ZAR/ 1537029857 ENCODE Processing Pipeline 985cea47726e146ca736443e22ad447c https://www.encodeproject.org/files/ENCFF448QJX/@@download/ENCFF448QJX.bam released s3://encode-public/2016/12/19/ed89a61e-6b56-4edf-be83-14106ee56c77/ENCFF448QJX.bam ENCODE3 hg19 archived low read length ENCFF937DTA bam bam alignments GRCh38 ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970CAQ/, /files/ENCFF953ZAR/, /files/ENCFF643CGH/ 1536878524 ENCODE Processing Pipeline cdf8bd8d73934ca0328e9b474aa396c4 https://www.encodeproject.org/files/ENCFF937DTA/@@download/ENCFF937DTA.bam released s3://encode-public/2016/12/19/8324dc23-78c2-4503-ba4e-db2e43275dd7/ENCFF937DTA.bam ENCODE3 GRCh38 archived low read length ENCFF332CAQ tagAlign tagAlign alignments hg19 ENCSR930RIA Control ChIP-seq CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 204554943 Anshul Kundaje, Stanford 237dde8e2cb4903858d7ecc3a0245baa https://www.encodeproject.org/files/ENCFF332CAQ/@@download/ENCFF332CAQ.tagAlign.gz archived s3://encode-public/2016/02/11/b9e9d994-e312-4fe3-9ce2-d51c0353ca79/ENCFF332CAQ.tagAlign.gz Lab custom hg19 archived low read length ENCFF566HDE bam bam alignments GRCh38 ENCSR930RIA Control ChIP-seq /human-donors/ENCDO028NGF/ CL:0000084 T-cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF970CAQ/, /files/ENCFF953ZAR/, /files/ENCFF110MCL/ 1671068578 ENCODE Processing Pipeline 1059dafdbca59d4419202224ea80d34d https://www.encodeproject.org/files/ENCFF566HDE/@@download/ENCFF566HDE.bam released s3://encode-public/2020/10/09/1abeeda0-d7d1-4ea8-a2d7-9bc7c4f594b7/ENCFF566HDE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF519QOK fastq fastq reads ENCSR286HLA Control ChIP-seq /fly-donors/ENCDO711UGB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32509/'], '@type': ['Target', 'Item'], 'name': 'CG15601-dmelanogaster', 'label': 'CG15601', '@id': '/targets/CG15601-dmelanogaster/', 'title': 'CG15601 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '4f2a8c8d-f2f7-461c-b422-860771529ec1', 'status': 'released'} dm3 X 15590582 15609718 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1133396437 Kevin White, UChicago dba7ec8b18f9ce4581d6230515944165 https://www.encodeproject.org/files/ENCFF519QOK/@@download/ENCFF519QOK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/33730fd1-c4c3-4407-b29c-2c4b21b20a61/ENCFF519QOK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF194QIK bam bam alignments dm6 ENCSR286HLA Control ChIP-seq /fly-donors/ENCDO711UGB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32509/'], '@type': ['Target', 'Item'], 'name': 'CG15601-dmelanogaster', 'label': 'CG15601', '@id': '/targets/CG15601-dmelanogaster/', 'title': 'CG15601 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '4f2a8c8d-f2f7-461c-b422-860771529ec1', 'status': 'released'} dm3 X 15590582 15609718 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF519QOK/, /files/ENCFF479RCH/ 1501516617 Kevin White, UChicago 17dcc092f7ba8f05f363c0a16a49537a https://www.encodeproject.org/files/ENCFF194QIK/@@download/ENCFF194QIK.bam released s3://encode-public/2019/04/13/09189d1b-658f-4607-bee5-0e397fcaab34/ENCFF194QIK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF849LTZ bigWig bigWig signal of unique reads dm6 ENCSR286HLA Control ChIP-seq /fly-donors/ENCDO711UGB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32509/'], '@type': ['Target', 'Item'], 'name': 'CG15601-dmelanogaster', 'label': 'CG15601', '@id': '/targets/CG15601-dmelanogaster/', 'title': 'CG15601 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '4f2a8c8d-f2f7-461c-b422-860771529ec1', 'status': 'released'} dm3 X 15590582 15609718 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF194QIK/ 17768312 Kevin White, UChicago f5c90b4bb2d060074e2582b4dd5a12fe https://www.encodeproject.org/files/ENCFF849LTZ/@@download/ENCFF849LTZ.bigWig released s3://encode-public/2019/04/16/6d14ac7d-8f8b-455b-98fb-f6982f69d249/ENCFF849LTZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF440HTY bigWig bigWig read-depth normalized signal dm6 ENCSR286HLA Control ChIP-seq /fly-donors/ENCDO711UGB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32509/'], '@type': ['Target', 'Item'], 'name': 'CG15601-dmelanogaster', 'label': 'CG15601', '@id': '/targets/CG15601-dmelanogaster/', 'title': 'CG15601 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '4f2a8c8d-f2f7-461c-b422-860771529ec1', 'status': 'released'} dm3 X 15590582 15609718 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF194QIK/ 17739253 Kevin White, UChicago eb5a62b2d0d45166e86390547be028f6 https://www.encodeproject.org/files/ENCFF440HTY/@@download/ENCFF440HTY.bigWig released s3://encode-public/2019/04/16/03e48e67-b008-4a9c-bdae-1ef47221c92e/ENCFF440HTY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF160YNG tagAlign tagAlign alignments hg19 ENCSR484VGD Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172892/ 153623124 Anshul Kundaje, Stanford 6de1b2072b96aafe7ad2d1b2494fe4fc https://www.encodeproject.org/files/ENCFF160YNG/@@download/ENCFF160YNG.tagAlign.gz archived s3://encode-public/2016/03/30/e0b1badb-688d-458c-b147-ed08bb605554/ENCFF160YNG.tagAlign.gz Lab custom hg19 archived ENCFF967NFM bam bam redacted unfiltered alignments GRCh38 ENCSR484VGD Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF099PYU/ 320219550 ENCODE Processing Pipeline a3dd73bf2d9c9e1458986787b9d2eb9f https://www.encodeproject.org/files/ENCFF967NFM/@@download/ENCFF967NFM.bam released s3://encode-public/2017/11/09/d41eacbf-1e22-4f81-9467-9038621af0ed/ENCFF967NFM.bam ENCODE3 GRCh38 archived ENCFF200RNQ bam bam redacted alignments GRCh38 ENCSR484VGD Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF099PYU/ 247194743 ENCODE Processing Pipeline 67024f017fa5e38f86f8b5109a6eac05 https://www.encodeproject.org/files/ENCFF200RNQ/@@download/ENCFF200RNQ.bam released s3://encode-public/2017/11/09/037540fd-4f9a-4667-a4c3-a23c22bdaf52/ENCFF200RNQ.bam ENCODE3 GRCh38 archived ENCFF367JAL bam bam redacted alignments hg19 ENCSR484VGD Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF099PYU/ 246764751 ENCODE Processing Pipeline 74934cad2c9fa0255aebc611d8bd6f88 https://www.encodeproject.org/files/ENCFF367JAL/@@download/ENCFF367JAL.bam released s3://encode-public/2018/01/20/bcd817f2-8a7b-4f1e-997d-2f12efe38f7e/ENCFF367JAL.bam ENCODE3 hg19 archived ENCFF989CBF bam bam redacted unfiltered alignments hg19 ENCSR484VGD Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF099PYU/ 314155582 ENCODE Processing Pipeline 140ba4831d281d97e196137bde898b6a https://www.encodeproject.org/files/ENCFF989CBF/@@download/ENCFF989CBF.bam released s3://encode-public/2018/01/20/5ee0de85-967f-4e0e-9015-e5025ea07f84/ENCFF989CBF.bam ENCODE3 hg19 archived ENCFF612ITA bam bam redacted alignments GRCh38 ENCSR484VGD Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002324 myoepithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF912YEG/, /files/ENCFF110MCL/ 1441695878 ENCODE Processing Pipeline f243bb8bad16161fae4996baf6e5f1df https://www.encodeproject.org/files/ENCFF612ITA/@@download/ENCFF612ITA.bam released s3://encode-public/2021/01/28/0e76cff9-957f-4dbc-893b-29fa8ab131a4/ENCFF612ITA.bam ENCODE4 v1.7.0 GRCh38 released ENCFF696RGF fastq fastq reads ENCSR681OTG Control ChIP-seq /fly-donors/ENCDO267QXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31331/'], '@type': ['Target', 'Item'], 'name': 'Mnt-dmelanogaster', 'label': 'Mnt', '@id': '/targets/Mnt-dmelanogaster/', 'title': 'Mnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e5ce7a62-b9f7-4701-b65a-aaa2efec4dfa', 'status': 'released'} dm3 X 3539716 3615483 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 457617810 Kevin White, UChicago a6e5d6594467ef10a352596953c1c815 https://www.encodeproject.org/files/ENCFF696RGF/@@download/ENCFF696RGF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/7a78c588-8824-4e7f-aad2-7d0b6ebe6d56/ENCFF696RGF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF927HSZ bam bam alignments dm3 ENCSR681OTG Control ChIP-seq /fly-donors/ENCDO267QXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31331/'], '@type': ['Target', 'Item'], 'name': 'Mnt-dmelanogaster', 'label': 'Mnt', '@id': '/targets/Mnt-dmelanogaster/', 'title': 'Mnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e5ce7a62-b9f7-4701-b65a-aaa2efec4dfa', 'status': 'released'} dm3 X 3539716 3615483 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF696RGF/ 686146894 Kevin White, UChicago b9ca7a4d22bd7ebe12d07179b8bcc759 https://www.encodeproject.org/files/ENCFF927HSZ/@@download/ENCFF927HSZ.bam released s3://encode-public/2015/08/05/dc022409-3ab5-476e-8429-faa06f6c0c98/ENCFF927HSZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF150LRF bigWig bigWig read-depth normalized signal dm3 ENCSR681OTG Control ChIP-seq /fly-donors/ENCDO267QXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31331/'], '@type': ['Target', 'Item'], 'name': 'Mnt-dmelanogaster', 'label': 'Mnt', '@id': '/targets/Mnt-dmelanogaster/', 'title': 'Mnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e5ce7a62-b9f7-4701-b65a-aaa2efec4dfa', 'status': 'released'} dm3 X 3539716 3615483 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF927HSZ/ 15135174 Kevin White, UChicago 2210857beff8431e7725465f565c3082 https://www.encodeproject.org/files/ENCFF150LRF/@@download/ENCFF150LRF.bigWig released s3://encode-public/2015/10/05/2e8355eb-f0d3-4c38-b4b6-8d2a8c39d5a8/ENCFF150LRF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF569LAG bigWig bigWig signal of unique reads dm3 ENCSR681OTG Control ChIP-seq /fly-donors/ENCDO267QXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31331/'], '@type': ['Target', 'Item'], 'name': 'Mnt-dmelanogaster', 'label': 'Mnt', '@id': '/targets/Mnt-dmelanogaster/', 'title': 'Mnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e5ce7a62-b9f7-4701-b65a-aaa2efec4dfa', 'status': 'released'} dm3 X 3539716 3615483 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF927HSZ/ 15148775 Kevin White, UChicago b4af5f9a7490402e96d5d5663f7e5e8c https://www.encodeproject.org/files/ENCFF569LAG/@@download/ENCFF569LAG.bigWig released s3://encode-public/2015/10/05/e137057c-be67-49e3-9200-1cdbfeb90c70/ENCFF569LAG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF791OSV bam bam alignments dm6 ENCSR681OTG Control ChIP-seq /fly-donors/ENCDO267QXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31331/'], '@type': ['Target', 'Item'], 'name': 'Mnt-dmelanogaster', 'label': 'Mnt', '@id': '/targets/Mnt-dmelanogaster/', 'title': 'Mnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e5ce7a62-b9f7-4701-b65a-aaa2efec4dfa', 'status': 'released'} dm3 X 3539716 3615483 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF696RGF/ 678762844 Kevin White, UChicago 02f6bd402fc14cea14d5d9aa82aa4c42 https://www.encodeproject.org/files/ENCFF791OSV/@@download/ENCFF791OSV.bam released s3://encode-public/2016/04/22/9cccef92-194e-4465-97dc-a183213c9f9c/ENCFF791OSV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF091CCC bigWig bigWig signal of unique reads dm6 ENCSR681OTG Control ChIP-seq /fly-donors/ENCDO267QXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31331/'], '@type': ['Target', 'Item'], 'name': 'Mnt-dmelanogaster', 'label': 'Mnt', '@id': '/targets/Mnt-dmelanogaster/', 'title': 'Mnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e5ce7a62-b9f7-4701-b65a-aaa2efec4dfa', 'status': 'released'} dm3 X 3539716 3615483 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF791OSV/ 17175997 Kevin White, UChicago ba6d90d585f17b896070fca6199a05ba https://www.encodeproject.org/files/ENCFF091CCC/@@download/ENCFF091CCC.bigWig released s3://encode-public/2016/06/21/0157d4b4-172f-45fe-bf8b-c2f50ebc6f97/ENCFF091CCC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF090DKW bigWig bigWig read-depth normalized signal dm6 ENCSR681OTG Control ChIP-seq /fly-donors/ENCDO267QXQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31331/'], '@type': ['Target', 'Item'], 'name': 'Mnt-dmelanogaster', 'label': 'Mnt', '@id': '/targets/Mnt-dmelanogaster/', 'title': 'Mnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e5ce7a62-b9f7-4701-b65a-aaa2efec4dfa', 'status': 'released'} dm3 X 3539716 3615483 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF791OSV/ 17167855 Kevin White, UChicago fa063c66db178d13e118ceefb64de4da https://www.encodeproject.org/files/ENCFF090DKW/@@download/ENCFF090DKW.bigWig released s3://encode-public/2016/06/21/131d63bd-86fb-4e83-8373-33fa335d6e19/ENCFF090DKW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002PIV tagAlign tagAlign alignments hg19 ENCSR425NYG Control ChIP-seq /human-donors/ENCDO666YUN/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172661/ 344630981 Anshul Kundaje, Stanford 92872263f9042e526e5e11e7ebb94652 https://www.encodeproject.org/files/ENCFF002PIV/@@download/ENCFF002PIV.tagAlign.gz archived s3://encode-public/2016/03/30/8e8c7381-ffc0-4246-9513-83fc4ded11d7/ENCFF002PIV.tagAlign.gz Lab custom hg19 archived ENCFF299AED tagAlign tagAlign alignments hg19 ENCSR425NYG Control ChIP-seq CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 203937526 Anshul Kundaje, Stanford 2228b388f982183ed3eb9846ff47989e https://www.encodeproject.org/files/ENCFF299AED/@@download/ENCFF299AED.tagAlign.gz archived s3://encode-public/2016/02/11/7645274a-3575-4712-9f06-451fc1c045b1/ENCFF299AED.tagAlign.gz Lab custom hg19 archived ENCFF749POO bam bam redacted alignments GRCh38 ENCSR425NYG Control ChIP-seq /human-donors/ENCDO666YUN/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF633RFE/, /files/ENCFF101VUQ/, /files/ENCFF643CGH/ 844242594 ENCODE Processing Pipeline 8db9106eedcdc5d70ad4ae48a1d98ebc https://www.encodeproject.org/files/ENCFF749POO/@@download/ENCFF749POO.bam released s3://encode-public/2017/11/28/38c3a0e4-bda4-4e4b-914d-008d2e6601e9/ENCFF749POO.bam ENCODE3 GRCh38 archived ENCFF523XQF bam bam redacted unfiltered alignments GRCh38 ENCSR425NYG Control ChIP-seq /human-donors/ENCDO666YUN/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF633RFE/, /files/ENCFF101VUQ/, /files/ENCFF643CGH/ 1104232637 ENCODE Processing Pipeline 5b724e7ea88e598f1adfdff6cf7be67a https://www.encodeproject.org/files/ENCFF523XQF/@@download/ENCFF523XQF.bam released s3://encode-public/2017/11/28/d81abd3d-f314-44a2-a002-65eed64d57e9/ENCFF523XQF.bam ENCODE3 GRCh38 archived ENCFF694ZEI bam bam redacted unfiltered alignments hg19 ENCSR425NYG Control ChIP-seq /human-donors/ENCDO666YUN/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF633RFE/, /files/ENCFF101VUQ/ 1083479320 ENCODE Processing Pipeline a372752d7069311a313721f99e7bd3f3 https://www.encodeproject.org/files/ENCFF694ZEI/@@download/ENCFF694ZEI.bam released s3://encode-public/2018/01/20/148b6584-527a-458e-a722-863ed6cc0bc4/ENCFF694ZEI.bam ENCODE3 hg19 archived ENCFF592LVU bam bam redacted alignments hg19 ENCSR425NYG Control ChIP-seq /human-donors/ENCDO666YUN/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF633RFE/, /files/ENCFF101VUQ/ 843514972 ENCODE Processing Pipeline f38d7561df74f688e7bbb3e142b1eb31 https://www.encodeproject.org/files/ENCFF592LVU/@@download/ENCFF592LVU.bam released s3://encode-public/2018/01/20/04922e1b-146a-44b4-a694-cea516f2a863/ENCFF592LVU.bam ENCODE3 hg19 archived ENCFF846KVH bam bam redacted alignments GRCh38 ENCSR425NYG Control ChIP-seq /human-donors/ENCDO666YUN/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF273LZN/, /files/ENCFF110MCL/, /files/ENCFF032GON/ 4058211449 ENCODE Processing Pipeline f007076bd47b7c7b2e7835cff0b8c4f4 https://www.encodeproject.org/files/ENCFF846KVH/@@download/ENCFF846KVH.bam released s3://encode-public/2021/01/28/aaee58a6-5bcb-4974-b081-c2488e6b6636/ENCFF846KVH.bam ENCODE4 v1.7.0 GRCh38 released ENCFF999MXU fastq fastq reads ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF782FKW/ 1973434903 Michael Snyder, Stanford 92b3e7ec6c4b47b3cf6122ea85387594 SRA:SRR6213026 https://www.encodeproject.org/files/ENCFF999MXU/@@download/ENCFF999MXU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/e7efcd4a-2bb7-4402-bd33-0ff32f09e32b/ENCFF999MXU.fastq.gz ENCFF782FKW fastq fastq reads ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF999MXU/ 2016526270 Michael Snyder, Stanford a12584555ac207bdf426e4469417410c SRA:SRR6213026 https://www.encodeproject.org/files/ENCFF782FKW/@@download/ENCFF782FKW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/7a848d20-82a3-4c1c-bf22-c9c19bd0c91f/ENCFF782FKW.fastq.gz ENCFF456CKG bam bam unfiltered alignments GRCh38 ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF782FKW/, /files/ENCFF999MXU/, /files/ENCFF643CGH/ 4500593375 ENCODE Processing Pipeline 52377f8733a033e51d9ac1e6c0423250 https://www.encodeproject.org/files/ENCFF456CKG/@@download/ENCFF456CKG.bam released s3://encode-public/2016/05/06/faafedef-2e11-443b-b818-d68f1660d6d1/ENCFF456CKG.bam ENCODE3 GRCh38 archived ENCFF270YLG bam bam alignments GRCh38 ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF782FKW/, /files/ENCFF999MXU/, /files/ENCFF643CGH/ 3767262082 ENCODE Processing Pipeline 56e1aaf5347076216b332ed84461fcc1 https://www.encodeproject.org/files/ENCFF270YLG/@@download/ENCFF270YLG.bam released s3://encode-public/2016/05/06/59597bdf-0bc7-4cee-9321-cb9788730f99/ENCFF270YLG.bam ENCODE3 GRCh38 archived ENCFF961KZG bam bam unfiltered alignments hg19 ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF782FKW/, /files/ENCFF999MXU/, /files/ENCFF807MUK/ 4491940948 ENCODE Processing Pipeline c3ffc32921782e9ef75398ec0ca2cbcf https://www.encodeproject.org/files/ENCFF961KZG/@@download/ENCFF961KZG.bam released s3://encode-public/2016/12/06/4dde9aa8-51dd-44f8-96d7-cf0c907859ce/ENCFF961KZG.bam ENCODE3 hg19 archived ENCFF905DKC bam bam alignments hg19 ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF782FKW/, /files/ENCFF999MXU/, /files/ENCFF807MUK/ 3761017448 ENCODE Processing Pipeline d9f63e7431fd2aca38a4b3f03ed16688 https://www.encodeproject.org/files/ENCFF905DKC/@@download/ENCFF905DKC.bam released s3://encode-public/2016/12/06/38294b10-de03-494f-87b6-d7ee18b2ecaa/ENCFF905DKC.bam ENCODE3 hg19 archived ENCFF627VKD bam bam unfiltered alignments GRCh38 ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF999MXU/, /files/ENCFF782FKW/ 4475877828 ENCODE Processing Pipeline 3e3aca19b60fbd21a14516b96fd4a1e5 https://www.encodeproject.org/files/ENCFF627VKD/@@download/ENCFF627VKD.bam released s3://encode-public/2020/06/03/ddc06133-8f18-4765-906c-c535e5397416/ENCFF627VKD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF395ADX bam bam alignments GRCh38 ENCSR277LNZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF999MXU/, /files/ENCFF782FKW/ 3690295734 ENCODE Processing Pipeline 9979fa4d784c63a87809b31064b3a1bc https://www.encodeproject.org/files/ENCFF395ADX/@@download/ENCFF395ADX.bam released s3://encode-public/2020/06/03/edcc1468-7e50-40ac-9982-33e7c1d93e62/ENCFF395ADX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF159OQW fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1222610586 Bradley Bernstein, Broad 5f7c738fa8caa78f862ea18f7263f738 SRA:SRR10388460 https://www.encodeproject.org/files/ENCFF159OQW/@@download/ENCFF159OQW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/26f84197-b886-40ec-aa8c-99ba09ce89c9/ENCFF159OQW.fastq.gz ENCFF830GSO fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 1152960395 Bradley Bernstein, Broad caead7cd322c2d9ca961b03f14bdcdf0 SRA:SRR10388464 https://www.encodeproject.org/files/ENCFF830GSO/@@download/ENCFF830GSO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/41785700-5237-4400-9afe-844767a6e148/ENCFF830GSO.fastq.gz ENCFF150EBA fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 1168980405 Bradley Bernstein, Broad caf60928f87e11cc708e14af74c2da99 SRA:SRR10388458 https://www.encodeproject.org/files/ENCFF150EBA/@@download/ENCFF150EBA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/b2a50688-6a04-491d-b577-8579e57bf0cc/ENCFF150EBA.fastq.gz ENCFF497KGU fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 1206732122 Bradley Bernstein, Broad 73925ec6ffce7bccbe24b4ba74be07f8 SRA:SRR10388465 https://www.encodeproject.org/files/ENCFF497KGU/@@download/ENCFF497KGU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/c22efe8d-fc15-4dc2-92c3-e969909729e6/ENCFF497KGU.fastq.gz ENCFF413KJJ fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1168662790 Bradley Bernstein, Broad c195d9f21c51cc5e73decb92bc343fae SRA:SRR10388461 https://www.encodeproject.org/files/ENCFF413KJJ/@@download/ENCFF413KJJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/5bf8e9ea-ac2d-401b-aeb6-89b1a38b677b/ENCFF413KJJ.fastq.gz ENCFF181ORA fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1 76 single-ended 1197999136 Bradley Bernstein, Broad 20c311ffacca35bbac459dae38dbdeec SRA:SRR10388459 https://www.encodeproject.org/files/ENCFF181ORA/@@download/ENCFF181ORA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/05e63f66-0f1c-4d3d-96c3-a3c21fa097c1/ENCFF181ORA.fastq.gz ENCFF375DYW fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_2 76 single-ended 1244085472 Bradley Bernstein, Broad a24d525b4a27d233192acb8a09a5d34f SRA:SRR10388456 https://www.encodeproject.org/files/ENCFF375DYW/@@download/ENCFF375DYW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/eba79d99-f493-432f-a8d2-d434b1c28617/ENCFF375DYW.fastq.gz ENCFF484NUU fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_2 76 single-ended 1172281960 Bradley Bernstein, Broad aac2b981961624d4413dc8aaba574e3b SRA:SRR10388457 https://www.encodeproject.org/files/ENCFF484NUU/@@download/ENCFF484NUU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/6e3d5f76-2fa7-44a4-b0ae-06f31fe66843/ENCFF484NUU.fastq.gz ENCFF251OTW fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_3 76 single-ended 781318939 Bradley Bernstein, Broad 7bdf99a9a2d83a05e0c9e75e3ac48034 SRA:SRR10388462 https://www.encodeproject.org/files/ENCFF251OTW/@@download/ENCFF251OTW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/dbc109bc-2a64-49bd-a4a8-affc1d1bbb53/ENCFF251OTW.fastq.gz ENCFF419LJE fastq fastq reads ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_3 76 single-ended 751998100 Bradley Bernstein, Broad 9b9964a670563921872eccba05f3faaa SRA:SRR10388463 https://www.encodeproject.org/files/ENCFF419LJE/@@download/ENCFF419LJE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/cffe28bc-8291-482d-b0b9-4d11e9a4c877/ENCFF419LJE.fastq.gz ENCFF824GVU bam bam unfiltered alignments hg19 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF413KJJ/, /files/ENCFF497KGU/, /files/ENCFF807MUK/, /files/ENCFF830GSO/, /files/ENCFF159OQW/ 4582655434 ENCODE Processing Pipeline 403232c0b6b1fab31b466fc8c1187038 https://www.encodeproject.org/files/ENCFF824GVU/@@download/ENCFF824GVU.bam released s3://encode-public/2019/08/11/8e94343b-1d80-4ca9-8a0e-e1f7165cbd89/ENCFF824GVU.bam ENCODE3 hg19 archived ENCFF833IPR bam bam unfiltered alignments hg19 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF251OTW/, /files/ENCFF807MUK/, /files/ENCFF375DYW/, /files/ENCFF419LJE/, /files/ENCFF181ORA/, /files/ENCFF484NUU/, /files/ENCFF150EBA/ 5907561309 ENCODE Processing Pipeline 30cd012554793b7091ed0602ae170b32 https://www.encodeproject.org/files/ENCFF833IPR/@@download/ENCFF833IPR.bam released s3://encode-public/2019/08/11/fa2f6a19-d911-449b-972e-4806b64c123b/ENCFF833IPR.bam ENCODE3 hg19 archived ENCFF363AUX bam bam unfiltered alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF413KJJ/, /files/ENCFF497KGU/, /files/ENCFF643CGH/, /files/ENCFF830GSO/, /files/ENCFF159OQW/ 4593869389 ENCODE Processing Pipeline 81942ec126e35a98fbf4c79e40efe854 https://www.encodeproject.org/files/ENCFF363AUX/@@download/ENCFF363AUX.bam released s3://encode-public/2019/08/11/faccedbf-26b6-4a12-9d1b-d8017003de06/ENCFF363AUX.bam ENCODE3 GRCh38 archived ENCFF100JBN bam bam unfiltered alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF643CGH/, /files/ENCFF251OTW/, /files/ENCFF375DYW/, /files/ENCFF419LJE/, /files/ENCFF181ORA/, /files/ENCFF484NUU/, /files/ENCFF150EBA/ 5922213407 ENCODE Processing Pipeline 634f81b89191be4a55444b3cb7a86d64 https://www.encodeproject.org/files/ENCFF100JBN/@@download/ENCFF100JBN.bam released s3://encode-public/2019/08/11/6a93327a-34d5-412d-990a-d59d5217dbce/ENCFF100JBN.bam ENCODE3 GRCh38 archived ENCFF003TMX bam bam alignments hg19 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF413KJJ/, /files/ENCFF497KGU/, /files/ENCFF807MUK/, /files/ENCFF830GSO/, /files/ENCFF159OQW/ 3855894278 ENCODE Processing Pipeline 9e447cbb3996be2a8cee0ccb62f7a433 https://www.encodeproject.org/files/ENCFF003TMX/@@download/ENCFF003TMX.bam released s3://encode-public/2019/08/11/a767e81e-22c0-4de0-82e4-529e35f077a0/ENCFF003TMX.bam ENCODE3 hg19 archived ENCFF744OJL bam bam alignments hg19 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF251OTW/, /files/ENCFF807MUK/, /files/ENCFF375DYW/, /files/ENCFF419LJE/, /files/ENCFF181ORA/, /files/ENCFF484NUU/, /files/ENCFF150EBA/ 4935489012 ENCODE Processing Pipeline 9c4bc4182a00d458b5c9f35297083abe https://www.encodeproject.org/files/ENCFF744OJL/@@download/ENCFF744OJL.bam released s3://encode-public/2019/08/11/a9484008-32ca-426e-aebf-d2804cdc1e5f/ENCFF744OJL.bam ENCODE3 hg19 archived ENCFF037YKX bam bam alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF413KJJ/, /files/ENCFF497KGU/, /files/ENCFF643CGH/, /files/ENCFF830GSO/, /files/ENCFF159OQW/ 3861049428 ENCODE Processing Pipeline 97e4e7b5071869d20212eddecbf26bdf https://www.encodeproject.org/files/ENCFF037YKX/@@download/ENCFF037YKX.bam released s3://encode-public/2019/08/11/8cdabc87-dd3c-42f2-b447-c8a025ffef34/ENCFF037YKX.bam ENCODE3 GRCh38 archived ENCFF872XJB bam bam alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF643CGH/, /files/ENCFF251OTW/, /files/ENCFF375DYW/, /files/ENCFF419LJE/, /files/ENCFF181ORA/, /files/ENCFF484NUU/, /files/ENCFF150EBA/ 4942816343 ENCODE Processing Pipeline 40ab0405dfa31bb506e57fd82ef8617e https://www.encodeproject.org/files/ENCFF872XJB/@@download/ENCFF872XJB.bam released s3://encode-public/2019/08/11/8e4b4752-7653-4c09-a58b-215199ed362b/ENCFF872XJB.bam ENCODE3 GRCh38 archived ENCFF037CGT bam bam unfiltered alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF413KJJ/, /files/ENCFF159OQW/, /files/ENCFF110MCL/, /files/ENCFF497KGU/, /files/ENCFF830GSO/ 4578946901 ENCODE Processing Pipeline 17e426ba2f7820d5563e80c6c3aecf8c https://www.encodeproject.org/files/ENCFF037CGT/@@download/ENCFF037CGT.bam released s3://encode-public/2020/09/19/aadc3e3d-f7be-411e-824f-15411efb2f40/ENCFF037CGT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF091TER bam bam unfiltered alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF251OTW/, /files/ENCFF375DYW/, /files/ENCFF181ORA/, /files/ENCFF110MCL/, /files/ENCFF419LJE/, /files/ENCFF484NUU/, /files/ENCFF150EBA/ 5889078038 ENCODE Processing Pipeline fbd6d080349ac5af31a568e8f3e00dc8 https://www.encodeproject.org/files/ENCFF091TER/@@download/ENCFF091TER.bam released s3://encode-public/2020/09/19/fbf74cd5-edab-4bac-9ace-036cb603a461/ENCFF091TER.bam ENCODE4 v1.5.1 GRCh38 released ENCFF867XJZ bam bam alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF413KJJ/, /files/ENCFF159OQW/, /files/ENCFF110MCL/, /files/ENCFF497KGU/, /files/ENCFF830GSO/ 3785225203 ENCODE Processing Pipeline 43615889951345a95c22721241e8fb33 https://www.encodeproject.org/files/ENCFF867XJZ/@@download/ENCFF867XJZ.bam released s3://encode-public/2020/09/19/d49db368-e84f-4332-abc7-9a1745fb8bd5/ENCFF867XJZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF527PLB bam bam alignments GRCh38 ENCSR559IPI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 2 2_1, 2_2, 2_3 76 /files/ENCFF251OTW/, /files/ENCFF375DYW/, /files/ENCFF181ORA/, /files/ENCFF110MCL/, /files/ENCFF419LJE/, /files/ENCFF484NUU/, /files/ENCFF150EBA/ 4957703673 ENCODE Processing Pipeline ebcb2e16e363f7de9693250cc1d08349 https://www.encodeproject.org/files/ENCFF527PLB/@@download/ENCFF527PLB.bam released s3://encode-public/2020/09/19/e81b0432-6c95-49a7-9a71-679b365fee5a/ENCFF527PLB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF748MPT fastq fastq reads ENCSR640GRU Control ChIP-seq /fly-donors/ENCDO733EDM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35261/'], '@type': ['Target', 'Item'], 'name': 'Nf-YB-dmelanogaster', 'label': 'Nf-YB', '@id': '/targets/Nf-YB-dmelanogaster/', 'title': 'Nf-YB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6d5115f5-c89f-4866-8321-d83a9e7f28da', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 467805944 Kevin White, UChicago 66d7f80a47ff2d7624bb938974a07117 https://www.encodeproject.org/files/ENCFF748MPT/@@download/ENCFF748MPT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/e2fcb3d2-51b4-4c60-8a08-3960720f3411/ENCFF748MPT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF854VZM bam bam alignments dm6 ENCSR640GRU Control ChIP-seq /fly-donors/ENCDO733EDM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35261/'], '@type': ['Target', 'Item'], 'name': 'Nf-YB-dmelanogaster', 'label': 'Nf-YB', '@id': '/targets/Nf-YB-dmelanogaster/', 'title': 'Nf-YB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6d5115f5-c89f-4866-8321-d83a9e7f28da', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF748MPT/, /files/ENCFF479RCH/ 616434988 Kevin White, UChicago ed963ab71e4d27a0b334bccb86e4d18c https://www.encodeproject.org/files/ENCFF854VZM/@@download/ENCFF854VZM.bam released s3://encode-public/2019/04/13/d32a1d96-bd0c-4c98-a373-c8754b66fc43/ENCFF854VZM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF910OCV bigWig bigWig signal of unique reads dm6 ENCSR640GRU Control ChIP-seq /fly-donors/ENCDO733EDM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35261/'], '@type': ['Target', 'Item'], 'name': 'Nf-YB-dmelanogaster', 'label': 'Nf-YB', '@id': '/targets/Nf-YB-dmelanogaster/', 'title': 'Nf-YB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6d5115f5-c89f-4866-8321-d83a9e7f28da', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF854VZM/ 17498785 Kevin White, UChicago 5e9b041a099cbb669ecc752c28486bea https://www.encodeproject.org/files/ENCFF910OCV/@@download/ENCFF910OCV.bigWig released s3://encode-public/2019/04/16/b81279b4-4000-4e66-8821-936133927ef2/ENCFF910OCV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF696XSM bigWig bigWig read-depth normalized signal dm6 ENCSR640GRU Control ChIP-seq /fly-donors/ENCDO733EDM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35261/'], '@type': ['Target', 'Item'], 'name': 'Nf-YB-dmelanogaster', 'label': 'Nf-YB', '@id': '/targets/Nf-YB-dmelanogaster/', 'title': 'Nf-YB (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6d5115f5-c89f-4866-8321-d83a9e7f28da', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF854VZM/ 17512096 Kevin White, UChicago 6665f41d3405bd807a20807e1ae50944 https://www.encodeproject.org/files/ENCFF696XSM/@@download/ENCFF696XSM.bigWig released s3://encode-public/2019/04/16/f00015a4-3cc1-4dd9-ac5e-179702db609a/ENCFF696XSM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF287ZTK fastq fastq reads ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF453QHY/ 1786996558 Richard Myers, HAIB 9904a7390515c2b8fff647f30d87c42f SRA:SRR8660006 https://www.encodeproject.org/files/ENCFF287ZTK/@@download/ENCFF287ZTK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/03249ca8-eff7-44bb-8dee-b9ecb8dc5602/ENCFF287ZTK.fastq.gz ENCFF453QHY fastq fastq reads ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF287ZTK/ 1745409283 Richard Myers, HAIB ab678c82cc0da65ff74b5626daa80ea3 SRA:SRR8660006 https://www.encodeproject.org/files/ENCFF453QHY/@@download/ENCFF453QHY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/834d424b-7a9d-45e8-ac34-29c41f951d3b/ENCFF453QHY.fastq.gz ENCFF019HKT bam bam unfiltered alignments GRCh38 ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF287ZTK/, /files/ENCFF453QHY/ 4270084611 ENCODE Processing Pipeline 575f86b297c9e864ae5f66bb05249d51 https://www.encodeproject.org/files/ENCFF019HKT/@@download/ENCFF019HKT.bam released s3://encode-public/2017/02/02/f9f706aa-5793-4bdf-bc1e-7a9b6b19a599/ENCFF019HKT.bam ENCODE3 GRCh38 archived ENCFF174MWM bam bam unfiltered alignments hg19 ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF287ZTK/, /files/ENCFF453QHY/ 4252750429 ENCODE Processing Pipeline fe6b77eedf451f5880a5ed146e433182 https://www.encodeproject.org/files/ENCFF174MWM/@@download/ENCFF174MWM.bam released s3://encode-public/2017/02/02/1a837fa9-c1b8-4290-8035-4717b14c18e1/ENCFF174MWM.bam ENCODE3 hg19 archived ENCFF629CIH bam bam alignments hg19 ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF287ZTK/, /files/ENCFF453QHY/ 2838302849 ENCODE Processing Pipeline ba7c36af4b382e4f3a0eb364c5c0546c https://www.encodeproject.org/files/ENCFF629CIH/@@download/ENCFF629CIH.bam released s3://encode-public/2017/02/02/a4282776-42b1-4c42-bb1a-764b497f38b6/ENCFF629CIH.bam ENCODE3 hg19 archived ENCFF916QVZ bam bam alignments GRCh38 ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF287ZTK/, /files/ENCFF453QHY/ 2840770998 ENCODE Processing Pipeline 19fb7f2f50ebcc14002e3f1e8e2ba13b https://www.encodeproject.org/files/ENCFF916QVZ/@@download/ENCFF916QVZ.bam released s3://encode-public/2017/02/02/7866b37a-ddf6-4332-8521-e0d6d0bd480f/ENCFF916QVZ.bam ENCODE3 GRCh38 archived ENCFF539SMB bam bam alignments GRCh38 ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF453QHY/, /files/ENCFF287ZTK/ 2661638021 ENCODE Processing Pipeline c1af7c951a098c4f836f6ce49abf68c9 https://www.encodeproject.org/files/ENCFF539SMB/@@download/ENCFF539SMB.bam released s3://encode-public/2020/06/06/36deef17-6d2d-4933-9d32-349bee2c4d43/ENCFF539SMB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF535NZP bam bam unfiltered alignments GRCh38 ENCSR576THU Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF453QHY/, /files/ENCFF287ZTK/ 4358747884 ENCODE Processing Pipeline 0d4a54062a33bdee46020a4ce90461c8 https://www.encodeproject.org/files/ENCFF535NZP/@@download/ENCFF535NZP.bam released s3://encode-public/2020/06/06/9b63cbdc-f4de-47ea-97cd-541709355296/ENCFF535NZP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF740OWA tagAlign tagAlign alignments hg19 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF176RJQ/, /files/ENCFF051RXP/ 86336959 Anshul Kundaje, Stanford 702e7b72cf838016ef78397ac0320a98 https://www.encodeproject.org/files/ENCFF740OWA/@@download/ENCFF740OWA.tagAlign.gz archived s3://encode-public/2016/03/30/5b5f3341-fd42-4a3d-af36-5ca06f92c7ae/ENCFF740OWA.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF051RXP fastq fastq reads ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 393060854 Zhiping Weng, UMass c720bacd77292e20854ba626c6b6baa3 SRA:SRR067971 https://www.encodeproject.org/files/ENCFF051RXP/@@download/ENCFF051RXP.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/11/03e630f9-d0c1-48bb-8795-78652f970c4d/ENCFF051RXP.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF176RJQ fastq fastq reads ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 352872314 Zhiping Weng, UMass f489eace5d69a35730a786fdbc31dbde SRA:SRR067972 https://www.encodeproject.org/files/ENCFF176RJQ/@@download/ENCFF176RJQ.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/e1672b7e-0ddd-4855-a01f-a60370a2d154/ENCFF176RJQ.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF991EDA bam bam unfiltered alignments GRCh38 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF176RJQ/, /files/ENCFF051RXP/, /files/ENCFF110MCL/ 888061601 ENCODE Processing Pipeline 74fa19c0708e6136e2066e259dbd0a41 https://www.encodeproject.org/files/ENCFF991EDA/@@download/ENCFF991EDA.bam released s3://encode-public/2020/10/08/06cfd05d-b950-447e-b3fa-bb5ee6c07c8b/ENCFF991EDA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF932OKX bam bam unfiltered alignments hg19 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF176RJQ/, /files/ENCFF051RXP/ 905325996 ENCODE Processing Pipeline e95e7c4c7f10cc8d299384c4f9dc6027 https://www.encodeproject.org/files/ENCFF932OKX/@@download/ENCFF932OKX.bam released s3://encode-public/2016/12/19/58a11eac-9399-41cd-bcab-a42e8b8e913d/ENCFF932OKX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF785QVH bam bam alignments hg19 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF176RJQ/, /files/ENCFF051RXP/ 404046425 ENCODE Processing Pipeline 26825e60d008bace1f9a9e1a5fc3ebde https://www.encodeproject.org/files/ENCFF785QVH/@@download/ENCFF785QVH.bam released s3://encode-public/2016/12/19/b4c3c977-821c-43fc-b2b5-3fd3ec188a48/ENCFF785QVH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF236MNB bam bam alignments GRCh38 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF176RJQ/, /files/ENCFF051RXP/ 403798893 ENCODE Processing Pipeline 2603f758f4f909be1d1dc634691411e3 https://www.encodeproject.org/files/ENCFF236MNB/@@download/ENCFF236MNB.bam released s3://encode-public/2016/12/19/d2cf9c8d-3889-43ff-850a-f04c924158d1/ENCFF236MNB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF195QGT bam bam unfiltered alignments GRCh38 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF176RJQ/, /files/ENCFF051RXP/ 907906241 ENCODE Processing Pipeline 0c94bce52aa2597b99bf5df95880451b https://www.encodeproject.org/files/ENCFF195QGT/@@download/ENCFF195QGT.bam released s3://encode-public/2016/12/19/c2264785-5005-454d-84ae-204b5150bce1/ENCFF195QGT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF139MSY bam bam alignments GRCh38 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF176RJQ/, /files/ENCFF051RXP/, /files/ENCFF110MCL/ 445152688 ENCODE Processing Pipeline 3e1f92599c89ad593f478ecd71f79cac https://www.encodeproject.org/files/ENCFF139MSY/@@download/ENCFF139MSY.bam released s3://encode-public/2020/10/08/7b7924e8-7d98-48a8-baad-103024f8dd11/ENCFF139MSY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF993JDE bam bam unfiltered alignments GRCh38 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 30 /files/ENCFF110MCL/, /files/ENCFF051RXP/, /files/ENCFF176RJQ/ 780498866 ENCODE Processing Pipeline 8af850abd053b93f20face0e848a5bd4 https://www.encodeproject.org/files/ENCFF993JDE/@@download/ENCFF993JDE.bam released s3://encode-public/2020/10/21/ccfa43ef-32c9-4ced-9b7a-179452759a44/ENCFF993JDE.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF214IXF bam bam alignments GRCh38 ENCSR569NEE Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 30 /files/ENCFF110MCL/, /files/ENCFF051RXP/, /files/ENCFF176RJQ/ 384705554 ENCODE Processing Pipeline 0e0a7e13d3e1089a82ae9b0a35cb40cf https://www.encodeproject.org/files/ENCFF214IXF/@@download/ENCFF214IXF.bam released s3://encode-public/2020/10/21/41e313f2-a785-40bd-abfe-18ac0d907d86/ENCFF214IXF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF343MVU fastq fastq reads ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 168750688 Michael Snyder, Stanford b68f362f999ffa07a3f8a518d3500370 https://www.encodeproject.org/files/ENCFF343MVU/@@download/ENCFF343MVU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4b92ad7e-902f-4381-9350-cd13d20b9e6a/ENCFF343MVU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF376QFO fastq fastq reads ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 186635839 Michael Snyder, Stanford 756b0f2dba6dd47556095bff156126ba https://www.encodeproject.org/files/ENCFF376QFO/@@download/ENCFF376QFO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/28f8421d-c27c-436f-a9e3-32e51ca7d7e7/ENCFF376QFO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF915AXT bigWig bigWig read-depth normalized signal ce10 ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF175DYS/ 10054148 Kevin White, UChicago a4c538f05804a6a1c4180d387734803c https://www.encodeproject.org/files/ENCFF915AXT/@@download/ENCFF915AXT.bigWig released s3://encode-public/2016/10/20/f191bf3c-0922-420a-8b16-2e455906e391/ENCFF915AXT.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF432AMY bigWig bigWig signal of unique reads ce10 ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF175DYS/ 10000566 Kevin White, UChicago cb6e93922c35193562ac83bccb81a5a5 https://www.encodeproject.org/files/ENCFF432AMY/@@download/ENCFF432AMY.bigWig released s3://encode-public/2016/10/20/5ac763df-9057-472d-84d1-0749c6b4970c/ENCFF432AMY.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF628QJJ bigWig bigWig signal of unique reads ce11 ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF941TOU/ 9998308 Kevin White, UChicago 61a80f384ea111d8f376990721f96ca6 https://www.encodeproject.org/files/ENCFF628QJJ/@@download/ENCFF628QJJ.bigWig released s3://encode-public/2016/10/21/c8fdd1b9-186d-4642-8830-b876ec47d5f6/ENCFF628QJJ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF951BDB bigWig bigWig read-depth normalized signal ce11 ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF941TOU/ 10052350 Kevin White, UChicago a9a7adde1bd86a457a37ccb4fcfe5556 https://www.encodeproject.org/files/ENCFF951BDB/@@download/ENCFF951BDB.bigWig released s3://encode-public/2016/10/21/1a78d21f-d836-4d13-b42c-165643195c68/ENCFF951BDB.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF175DYS bam bam alignments ce10 ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF987UMF/, /files/ENCFF343MVU/, /files/ENCFF376QFO/ 466314624 Kevin White, UChicago c0bf31a7e6ac7bbe25500134a99f7876 https://www.encodeproject.org/files/ENCFF175DYS/@@download/ENCFF175DYS.bam released s3://encode-public/2016/10/18/941fd01b-ebb6-4272-b0b5-fe0769a1ea1e/ENCFF175DYS.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF941TOU bam bam alignments ce11 ENCSR534JVP Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF586MOL/, /files/ENCFF343MVU/, /files/ENCFF376QFO/ 466832222 Kevin White, UChicago 00491ab2b74e95191a8b06e7eab765c7 https://www.encodeproject.org/files/ENCFF941TOU/@@download/ENCFF941TOU.bam released s3://encode-public/2017/11/17/7d5b54cf-5d4f-4ede-84f2-33777e135d60/ENCFF941TOU.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF591ARE fastq fastq reads ENCSR650VIH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF921XQE/ 2097460408 Michael Snyder, Stanford 1eac28e4404886c67bbadd712ef6397e SRA:SRR14107781 https://www.encodeproject.org/files/ENCFF591ARE/@@download/ENCFF591ARE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/11/f266feb1-d800-4c75-9225-70df1a359071/ENCFF591ARE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF921XQE fastq fastq reads ENCSR650VIH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF591ARE/ 2355802834 Michael Snyder, Stanford 4962af0f14546f1e0e27847fe48e3cb0 SRA:SRR14107781 https://www.encodeproject.org/files/ENCFF921XQE/@@download/ENCFF921XQE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/11/bfb793d4-796b-499e-8699-fb0321cd7329/ENCFF921XQE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF687RXG bam bam unfiltered alignments GRCh38 ENCSR650VIH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF591ARE/, /files/ENCFF921XQE/ 3975743470 ENCODE Processing Pipeline faf98d9f2ac48b6702b68204160f2d47 https://www.encodeproject.org/files/ENCFF687RXG/@@download/ENCFF687RXG.bam released s3://encode-public/2020/04/21/e7094a32-3911-4fd7-acfa-ee92006cb6a4/ENCFF687RXG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF135IES bam bam alignments GRCh38 ENCSR650VIH Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF591ARE/, /files/ENCFF921XQE/ 2785533673 ENCODE Processing Pipeline 78d78e38e4b0da13b6072dd66d0e82e0 https://www.encodeproject.org/files/ENCFF135IES/@@download/ENCFF135IES.bam released s3://encode-public/2020/04/21/a326dedb-ad13-44d2-9041-826593a4b4a3/ENCFF135IES.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF962NAA fastq fastq reads ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 62971341 Michael Snyder, Stanford 136c8960df3d0c250b775057a13a1a8c https://www.encodeproject.org/files/ENCFF962NAA/@@download/ENCFF962NAA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bb548913-fe00-4eec-affe-7efc0359e7fb/ENCFF962NAA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF076BFH fastq fastq reads ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 31395821 Michael Snyder, Stanford 4130d14634d12591411af977fccf093d https://www.encodeproject.org/files/ENCFF076BFH/@@download/ENCFF076BFH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/be5a7e7c-91e7-45a1-90a8-c23c8ede036e/ENCFF076BFH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF635LLO fastq fastq reads ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 37732298 Michael Snyder, Stanford 2ec7d77a078b18e82e9ad82b83bf571b https://www.encodeproject.org/files/ENCFF635LLO/@@download/ENCFF635LLO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f34ab550-193c-4945-882d-b21a10cb4aa9/ENCFF635LLO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF997YMU bam bam alignments ce10 ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF962NAA/, /files/ENCFF076BFH/, /files/ENCFF635LLO/, /files/ENCFF987UMF/ 171484219 Kevin White, UChicago da5822ed3a4fbfa314e67591306275cc https://www.encodeproject.org/files/ENCFF997YMU/@@download/ENCFF997YMU.bam released s3://encode-public/2016/10/18/d82fdcfa-e29b-4ac8-9002-1c8092ee0dee/ENCFF997YMU.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF255HEH bam bam alignments ce11 ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF962NAA/, /files/ENCFF076BFH/, /files/ENCFF635LLO/, /files/ENCFF586MOL/ 171659619 Kevin White, UChicago d3311247c74f573cc6f5cc08f66079e7 https://www.encodeproject.org/files/ENCFF255HEH/@@download/ENCFF255HEH.bam released s3://encode-public/2016/10/18/86f0d50c-54b2-48dc-a8b6-9e98169d3513/ENCFF255HEH.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF181YQA bigWig bigWig read-depth normalized signal ce10 ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF997YMU/ 9982132 Kevin White, UChicago a6e20857ba57dea0cefb55ce17488854 https://www.encodeproject.org/files/ENCFF181YQA/@@download/ENCFF181YQA.bigWig released s3://encode-public/2016/10/20/37e11f17-6b44-4920-b3c8-9d9649954d60/ENCFF181YQA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF569CVM bigWig bigWig signal of unique reads ce10 ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF997YMU/ 9972201 Kevin White, UChicago 13f4bd22ac88be2f38763f820583f496 https://www.encodeproject.org/files/ENCFF569CVM/@@download/ENCFF569CVM.bigWig released s3://encode-public/2016/10/20/d200aae1-c555-4ecf-9449-9eabf573d88b/ENCFF569CVM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF361JZV bigWig bigWig signal of unique reads ce11 ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF255HEH/ 9977802 Kevin White, UChicago b4243e110a1f23b8e678cc38e8a8bacf https://www.encodeproject.org/files/ENCFF361JZV/@@download/ENCFF361JZV.bigWig released s3://encode-public/2016/10/21/d9d7d407-7ba9-477a-b8f0-e4e1db1c6c28/ENCFF361JZV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF540YUK bigWig bigWig read-depth normalized signal ce11 ENCSR084IVO Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF255HEH/ 9984591 Kevin White, UChicago fc12d04e96bada28289832f441abc23d https://www.encodeproject.org/files/ENCFF540YUK/@@download/ENCFF540YUK.bigWig released s3://encode-public/2016/10/21/6a310c50-4af1-4fa2-ae4a-42e6502e8402/ENCFF540YUK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF528PZX fastq fastq reads ENCSR157XVL Control ChIP-seq /fly-donors/ENCDO515ZZU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38872/'], '@type': ['Target', 'Item'], 'name': 'Clk-dmelanogaster', 'label': 'Clk', '@id': '/targets/Clk-dmelanogaster/', 'title': 'Clk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '924c2d19-22fa-49c1-8b64-0a6bc1c05e11', 'status': 'released'} dm3 3L 7752412 7773068 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 564563630 Kevin White, UChicago 3fa3554f15d28376b611098f817d4741 https://www.encodeproject.org/files/ENCFF528PZX/@@download/ENCFF528PZX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/bf51074d-34b4-40ed-b5e3-69279391fafa/ENCFF528PZX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF595OBP bam bam alignments dm3 ENCSR157XVL Control ChIP-seq /fly-donors/ENCDO515ZZU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38872/'], '@type': ['Target', 'Item'], 'name': 'Clk-dmelanogaster', 'label': 'Clk', '@id': '/targets/Clk-dmelanogaster/', 'title': 'Clk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '924c2d19-22fa-49c1-8b64-0a6bc1c05e11', 'status': 'released'} dm3 3L 7752412 7773068 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF528PZX/, /files/ENCFF059UHX/ 767709590 Kevin White, UChicago 045086b737bffb6f0a1654f183d61537 https://www.encodeproject.org/files/ENCFF595OBP/@@download/ENCFF595OBP.bam released s3://encode-public/2016/12/23/f5d49295-2b23-40f2-9a7f-8834d2effa31/ENCFF595OBP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF530EHX bam bam alignments dm6 ENCSR157XVL Control ChIP-seq /fly-donors/ENCDO515ZZU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38872/'], '@type': ['Target', 'Item'], 'name': 'Clk-dmelanogaster', 'label': 'Clk', '@id': '/targets/Clk-dmelanogaster/', 'title': 'Clk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '924c2d19-22fa-49c1-8b64-0a6bc1c05e11', 'status': 'released'} dm3 3L 7752412 7773068 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF528PZX/, /files/ENCFF479RCH/ 758498896 Kevin White, UChicago a6e16341e88b083b26971ee5d557c785 https://www.encodeproject.org/files/ENCFF530EHX/@@download/ENCFF530EHX.bam released s3://encode-public/2016/12/23/8541ed1a-3be2-45f9-8541-167c0f1c2dc1/ENCFF530EHX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF199YTU bigWig bigWig read-depth normalized signal dm3 ENCSR157XVL Control ChIP-seq /fly-donors/ENCDO515ZZU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38872/'], '@type': ['Target', 'Item'], 'name': 'Clk-dmelanogaster', 'label': 'Clk', '@id': '/targets/Clk-dmelanogaster/', 'title': 'Clk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '924c2d19-22fa-49c1-8b64-0a6bc1c05e11', 'status': 'released'} dm3 3L 7752412 7773068 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF595OBP/ 15372739 Kevin White, UChicago 80b63106bff138ea5fff1ea3ac93a342 https://www.encodeproject.org/files/ENCFF199YTU/@@download/ENCFF199YTU.bigWig released s3://encode-public/2017/01/03/6cce62fa-7f87-4215-b8c7-01251860b431/ENCFF199YTU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF494KUJ bigWig bigWig signal of unique reads dm3 ENCSR157XVL Control ChIP-seq /fly-donors/ENCDO515ZZU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', 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organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38872/'], '@type': ['Target', 'Item'], 'name': 'Clk-dmelanogaster', 'label': 'Clk', '@id': '/targets/Clk-dmelanogaster/', 'title': 'Clk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '924c2d19-22fa-49c1-8b64-0a6bc1c05e11', 'status': 'released'} dm3 3L 7752412 7773068 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF530EHX/ 17441960 Kevin White, UChicago 267686799c36e7ef3908a264cd01e836 https://www.encodeproject.org/files/ENCFF334SDV/@@download/ENCFF334SDV.bigWig released s3://encode-public/2017/01/04/0755f09f-05f8-4a56-8012-1f2a2027f8c8/ENCFF334SDV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF432AJW bigWig bigWig read-depth normalized signal dm6 ENCSR157XVL Control ChIP-seq /fly-donors/ENCDO515ZZU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38872/'], '@type': ['Target', 'Item'], 'name': 'Clk-dmelanogaster', 'label': 'Clk', '@id': '/targets/Clk-dmelanogaster/', 'title': 'Clk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '924c2d19-22fa-49c1-8b64-0a6bc1c05e11', 'status': 'released'} dm3 3L 7752412 7773068 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF530EHX/ 17466296 Kevin White, UChicago 3ccc9298d69c199d56e2cec60a34b2e6 https://www.encodeproject.org/files/ENCFF432AJW/@@download/ENCFF432AJW.bigWig released s3://encode-public/2017/01/04/ab3509f6-bfd4-4658-b47e-2d22883ffcac/ENCFF432AJW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF099QZQ fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 359969823 Bradley Bernstein, Broad 92003e5c70181b95d653d6d8d70c738e SRA:SRR14107887 https://www.encodeproject.org/files/ENCFF099QZQ/@@download/ENCFF099QZQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3b62aee3-7dbf-415d-a07a-a2223dafef72/ENCFF099QZQ.fastq.gz ENCFF645LGG fastq fastq reads ENCSR686HII Control ChIP-seq 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ENCODE 200-600 1 1_1 76 single-ended 375584333 Bradley Bernstein, Broad f421eb2687b9014c9d09cd47d8fce552 SRA:SRR14107889 https://www.encodeproject.org/files/ENCFF039XPM/@@download/ENCFF039XPM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/fb7fe041-def5-4231-8b0e-549a3855c593/ENCFF039XPM.fastq.gz ENCFF491WIB fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 447942355 Bradley Bernstein, Broad a588b4848052393a152c3f062fe444e4 SRA:SRR14107884 https://www.encodeproject.org/files/ENCFF491WIB/@@download/ENCFF491WIB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/cc0e3145-1943-482a-9384-849436a089a7/ENCFF491WIB.fastq.gz ENCFF576CAL fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 449916054 Bradley Bernstein, Broad 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GRCh38 archived ENCFF165BEL bam bam unfiltered alignments GRCh38 ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF505TSN/, /files/ENCFF650FUI/, /files/ENCFF939UMB/, /files/ENCFF774AZF/, /files/ENCFF364LTL/, /files/ENCFF897HGK/, /files/ENCFF491WIB/, /files/ENCFF576CAL/, /files/ENCFF110MCL/ 3675016565 ENCODE Processing Pipeline 774e8deb57f0de5221884d8ceaa05141 https://www.encodeproject.org/files/ENCFF165BEL/@@download/ENCFF165BEL.bam archived s3://encode-public/2020/06/14/640e2a1e-1c14-4494-a8aa-4777690d1ce9/ENCFF165BEL.bam ENCODE4 v1.4.0 GRCh38 archived ENCFF628CFK fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 3 3_1 76 single-ended 305861753 Bradley Bernstein, Broad 775231c50c306df3923666c58424fcb0 https://www.encodeproject.org/files/ENCFF628CFK/@@download/ENCFF628CFK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/372ef2cb-7f9f-4ca8-b9b5-a15b01580742/ENCFF628CFK.fastq.gz ENCFF700UQO fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 3 3_1 76 single-ended 303008570 Bradley Bernstein, Broad 35f6631d130dfa66a8a613dc15fc4043 https://www.encodeproject.org/files/ENCFF700UQO/@@download/ENCFF700UQO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/254712a1-35bb-47ff-9e9b-a0e75b22c270/ENCFF700UQO.fastq.gz ENCFF071LZJ fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 3 3_1 76 single-ended 289945448 Bradley Bernstein, Broad e8eb246a984f099b00377cd47d7fca74 https://www.encodeproject.org/files/ENCFF071LZJ/@@download/ENCFF071LZJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/f0080048-61d8-4942-9476-3f876d9d8a0a/ENCFF071LZJ.fastq.gz ENCFF024VVJ 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2020-07-06 ENCODE 200-600 3 3_2 76 single-ended 451794091 Bradley Bernstein, Broad d37de43597312a93f5f546810ce87175 https://www.encodeproject.org/files/ENCFF042JQP/@@download/ENCFF042JQP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/18c3ee42-1fe3-4cc7-b206-a4f86bea9dd4/ENCFF042JQP.fastq.gz ENCFF276EGI fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 3 3_2 76 single-ended 453205049 Bradley Bernstein, Broad 1ea64901834a7336e429120018f22dcc https://www.encodeproject.org/files/ENCFF276EGI/@@download/ENCFF276EGI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/fb17e4c2-591b-423f-baa4-bcfdfb22c035/ENCFF276EGI.fastq.gz ENCFF068ILL fastq fastq reads ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 3 3_2 76 single-ended 457236900 Bradley Bernstein, Broad 5eb5b54bb031bd79680d18cc75ee706d https://www.encodeproject.org/files/ENCFF068ILL/@@download/ENCFF068ILL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/ce4c05cf-202b-4f6f-8a36-3245ffa0bc3e/ENCFF068ILL.fastq.gz ENCFF858YDW bam bam unfiltered alignments GRCh38 ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF099QZQ/, /files/ENCFF039XPM/, /files/ENCFF997XXG/, /files/ENCFF494HGS/, /files/ENCFF664CJO/, /files/ENCFF645LGG/, /files/ENCFF444QAH/, /files/ENCFF110MCL/, /files/ENCFF221DWA/ 2855000833 ENCODE Processing Pipeline 11554ba0e5512365355d9ff44521f7d5 https://www.encodeproject.org/files/ENCFF858YDW/@@download/ENCFF858YDW.bam released s3://encode-public/2021/06/18/b8a8150a-9e5b-4cf6-9df6-226ed3fdacb0/ENCFF858YDW.bam ENCODE4 v1.8.0 GRCh38 released ENCFF162TKJ bam bam alignments GRCh38 ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF099QZQ/, /files/ENCFF039XPM/, /files/ENCFF997XXG/, /files/ENCFF494HGS/, /files/ENCFF664CJO/, /files/ENCFF645LGG/, /files/ENCFF444QAH/, /files/ENCFF110MCL/, /files/ENCFF221DWA/ 2402465218 ENCODE Processing Pipeline e16549441ffd56b9706ea462a083eec6 https://www.encodeproject.org/files/ENCFF162TKJ/@@download/ENCFF162TKJ.bam released s3://encode-public/2021/06/18/5fcba277-48c4-43b5-84b0-e9903a15aeeb/ENCFF162TKJ.bam ENCODE4 v1.8.0 GRCh38 released ENCFF752GVS bam bam unfiltered alignments GRCh38 ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF897HGK/, /files/ENCFF505TSN/, /files/ENCFF576CAL/, /files/ENCFF491WIB/, /files/ENCFF650FUI/, /files/ENCFF364LTL/, /files/ENCFF939UMB/, /files/ENCFF110MCL/, /files/ENCFF774AZF/ 3675020469 ENCODE Processing Pipeline 3a0a390e9c2745baa738d6c7b78042ca https://www.encodeproject.org/files/ENCFF752GVS/@@download/ENCFF752GVS.bam released s3://encode-public/2021/06/18/824d0bc5-e2fc-4956-a98c-5f9d4a4d52f8/ENCFF752GVS.bam ENCODE4 v1.8.0 GRCh38 released ENCFF333SVA bam bam unfiltered alignments GRCh38 ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF848JUJ/, /files/ENCFF628CFK/, /files/ENCFF068ILL/, /files/ENCFF042JQP/, /files/ENCFF276EGI/, /files/ENCFF071LZJ/, /files/ENCFF024VVJ/, /files/ENCFF110MCL/, /files/ENCFF700UQO/ 3032050490 ENCODE Processing Pipeline 8649430aefae3adab4081e5367941be7 https://www.encodeproject.org/files/ENCFF333SVA/@@download/ENCFF333SVA.bam released s3://encode-public/2021/06/18/dfd2c8de-3ec9-4d2f-a827-ce21c1bfde07/ENCFF333SVA.bam ENCODE4 v1.8.0 GRCh38 released ENCFF329YHT bam bam alignments GRCh38 ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF897HGK/, /files/ENCFF505TSN/, /files/ENCFF576CAL/, /files/ENCFF491WIB/, /files/ENCFF650FUI/, /files/ENCFF364LTL/, /files/ENCFF939UMB/, /files/ENCFF110MCL/, /files/ENCFF774AZF/ 3089011107 ENCODE Processing Pipeline f777c3172c6b1636d1aaf4b9f0d6a8d1 https://www.encodeproject.org/files/ENCFF329YHT/@@download/ENCFF329YHT.bam released s3://encode-public/2021/06/18/1797dae5-271f-42e1-bf17-dee9269599e2/ENCFF329YHT.bam ENCODE4 v1.8.0 GRCh38 released ENCFF921LQO bam bam alignments GRCh38 ENCSR686HII Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF848JUJ/, /files/ENCFF628CFK/, /files/ENCFF068ILL/, /files/ENCFF042JQP/, /files/ENCFF276EGI/, /files/ENCFF071LZJ/, /files/ENCFF024VVJ/, /files/ENCFF110MCL/, /files/ENCFF700UQO/ 2580041359 ENCODE Processing Pipeline fe08f5ef4399055776810379572813f5 https://www.encodeproject.org/files/ENCFF921LQO/@@download/ENCFF921LQO.bam released s3://encode-public/2021/06/18/b5c865ee-64b2-49a5-ae06-baa4ed00cdd9/ENCFF921LQO.bam ENCODE4 v1.8.0 GRCh38 released ENCFF094LCI fastq fastq reads ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF818HXE/ 2863071800 Richard Myers, HAIB ee196e664f939891ba8f84813076ade1 SRA:SRR8660195 https://www.encodeproject.org/files/ENCFF094LCI/@@download/ENCFF094LCI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/e39ab727-c1ac-4577-ac6f-fbe5ea7b2696/ENCFF094LCI.fastq.gz ENCFF818HXE fastq fastq reads ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF094LCI/ 3001958693 Richard Myers, HAIB b00ca776547d40e468dc125fca50e137 SRA:SRR8660195 https://www.encodeproject.org/files/ENCFF818HXE/@@download/ENCFF818HXE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/eeaa7c79-5a83-4259-9f3b-880d447c4307/ENCFF818HXE.fastq.gz ENCFF909WVL bam bam unfiltered alignments GRCh38 ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF818HXE/, /files/ENCFF094LCI/ 6969076587 ENCODE Processing Pipeline abf9ef86b502553966f8d6c08e1b2be2 https://www.encodeproject.org/files/ENCFF909WVL/@@download/ENCFF909WVL.bam released s3://encode-public/2017/02/02/57f32427-3706-4532-a7f1-e91306cbe27c/ENCFF909WVL.bam ENCODE3 GRCh38 archived ENCFF729OTP bam bam alignments GRCh38 ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF818HXE/, /files/ENCFF094LCI/ 4851065931 ENCODE Processing Pipeline d6251e8b595ff7148e69a212e37841ab https://www.encodeproject.org/files/ENCFF729OTP/@@download/ENCFF729OTP.bam released s3://encode-public/2017/02/02/3af81dae-7213-4e8e-9423-5e479f942748/ENCFF729OTP.bam ENCODE3 GRCh38 archived ENCFF926LIW bam bam unfiltered alignments hg19 ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF818HXE/, /files/ENCFF094LCI/ 6941159508 ENCODE Processing Pipeline eb6a0e57222db27ad96461feefe3e316 https://www.encodeproject.org/files/ENCFF926LIW/@@download/ENCFF926LIW.bam released s3://encode-public/2017/02/02/38058d54-86fb-4a1f-a398-1c40870bde8a/ENCFF926LIW.bam ENCODE3 hg19 archived ENCFF468VJA bam bam alignments hg19 ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF818HXE/, /files/ENCFF094LCI/ 4846149130 ENCODE Processing Pipeline 8a63191387dbe310495d0bb26f41bd03 https://www.encodeproject.org/files/ENCFF468VJA/@@download/ENCFF468VJA.bam released s3://encode-public/2017/02/02/424a40ac-a9c5-40f3-a24b-2cad06d73af8/ENCFF468VJA.bam ENCODE3 hg19 archived ENCFF112VWA bam bam unfiltered alignments GRCh38 ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF094LCI/, /files/ENCFF818HXE/ 7021166735 ENCODE Processing Pipeline 6e77aa9b600593dbd607fef5b51c26f3 https://www.encodeproject.org/files/ENCFF112VWA/@@download/ENCFF112VWA.bam released s3://encode-public/2020/06/06/3ba77661-e3b6-4a72-ad6f-69b9fc518f27/ENCFF112VWA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF148TAH bam bam alignments GRCh38 ENCSR237CQV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF094LCI/, /files/ENCFF818HXE/ 4614354677 ENCODE Processing Pipeline 42c6abbe194e88b1875c83cdd3e5fa7c https://www.encodeproject.org/files/ENCFF148TAH/@@download/ENCFF148TAH.bam released s3://encode-public/2020/06/06/d16196c8-83d9-4219-807d-c7d223d063df/ENCFF148TAH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF966IYB bam bam unfiltered alignments GRCh38 ENCSR531AUV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF343KOW/, /files/ENCFF257SHR/, /files/ENCFF570ALA/, /files/ENCFF978VOC/, /files/ENCFF804GEV/, /files/ENCFF535YAX/ 3295750256 ENCODE Processing Pipeline ab9be9e74b3be344b0bafc1660188840 https://www.encodeproject.org/files/ENCFF966IYB/@@download/ENCFF966IYB.bam released s3://encode-public/2020/09/19/9479598d-5faa-495c-8652-480d1863898e/ENCFF966IYB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF257SHR fastq fastq reads ENCSR531AUV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 327699117 Bradley Bernstein, Broad 6ab8fafbb66be97f3f23e05bba86cc0d SRA:SRR10388993 https://www.encodeproject.org/files/ENCFF257SHR/@@download/ENCFF257SHR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/6d464541-4d4e-45a6-afd6-abfbfcc29369/ENCFF257SHR.fastq.gz ENCFF804GEV fastq fastq reads ENCSR531AUV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 319933610 Bradley Bernstein, Broad 0a401f76319e0bc24e027feaaad5b5bc SRA:SRR10388994 https://www.encodeproject.org/files/ENCFF804GEV/@@download/ENCFF804GEV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/3a255661-a899-4eff-8ffa-4d5593b70b27/ENCFF804GEV.fastq.gz ENCFF978VOC fastq fastq reads ENCSR531AUV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 544592128 Bradley Bernstein, Broad 77596fc142440b6a78b18131d6eef1ec SRA:SRR10388995 https://www.encodeproject.org/files/ENCFF978VOC/@@download/ENCFF978VOC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/f9a48138-ae7c-4f6b-b823-328976949313/ENCFF978VOC.fastq.gz ENCFF535YAX fastq fastq reads ENCSR531AUV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 796280466 Bradley Bernstein, Broad e1d81c45fce4d51ec04d82758edd1d85 SRA:SRR10388997 https://www.encodeproject.org/files/ENCFF535YAX/@@download/ENCFF535YAX.fastq.gz Illumina HiSeq 2500 released 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UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF535YAX/, /files/ENCFF807MUK/, /files/ENCFF804GEV/, /files/ENCFF343KOW/, /files/ENCFF257SHR/, /files/ENCFF570ALA/, /files/ENCFF978VOC/ 3317586765 ENCODE Processing Pipeline b88c08baa8ab19de04225deda00e379c https://www.encodeproject.org/files/ENCFF485MAU/@@download/ENCFF485MAU.bam released s3://encode-public/2019/08/28/568fea88-7d6f-471b-bac5-caf36d0b6d56/ENCFF485MAU.bam ENCODE3 hg19 archived ENCFF981ZRM bam bam alignments GRCh38 ENCSR531AUV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF343KOW/, /files/ENCFF257SHR/, /files/ENCFF570ALA/, /files/ENCFF978VOC/, /files/ENCFF804GEV/, /files/ENCFF535YAX/ 2738416635 ENCODE Processing Pipeline c019a47b59005adc2e0ba1c538dd1f50 https://www.encodeproject.org/files/ENCFF981ZRM/@@download/ENCFF981ZRM.bam released s3://encode-public/2020/09/19/0c20faec-a46f-475d-ad7c-6ea3a4194f7c/ENCFF981ZRM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF295WTX fastq fastq reads ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 177941219 Michael Snyder, Stanford 594ee5883f513f9e91c08c6ebe114cc8 https://www.encodeproject.org/files/ENCFF295WTX/@@download/ENCFF295WTX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8c879e73-20cf-442f-b673-f887b48604a8/ENCFF295WTX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF515UDT fastq fastq reads ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 188727375 Michael Snyder, Stanford a461038194c3c470059080547b2a67ef https://www.encodeproject.org/files/ENCFF515UDT/@@download/ENCFF515UDT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/365057f4-a5ea-4f3d-bd90-117ea79c8e41/ENCFF515UDT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF219CFB bam bam alignments ce10 ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF295WTX/, /files/ENCFF515UDT/, /files/ENCFF987UMF/ 469301894 Kevin White, UChicago 0b50e72696082b8ba2ef010faede8f2e https://www.encodeproject.org/files/ENCFF219CFB/@@download/ENCFF219CFB.bam released s3://encode-public/2016/10/18/f3d5511f-d23e-4c05-a186-56c48402734b/ENCFF219CFB.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF181NLF bam bam alignments ce11 ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF295WTX/, /files/ENCFF515UDT/, /files/ENCFF586MOL/ 469798965 Kevin White, UChicago 65d0726e407e4956fd003c3adfbed85e https://www.encodeproject.org/files/ENCFF181NLF/@@download/ENCFF181NLF.bam released s3://encode-public/2016/10/19/47f2cf28-e855-4e33-b0a4-62bc60bfef7f/ENCFF181NLF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF062KOK bigWig bigWig read-depth normalized signal ce10 ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF219CFB/ 10031006 Kevin White, UChicago 3ccbec33d8f40f0df5d6db411875ca93 https://www.encodeproject.org/files/ENCFF062KOK/@@download/ENCFF062KOK.bigWig released s3://encode-public/2016/10/20/573cba63-c9d2-4e68-803e-d5ed026dfb80/ENCFF062KOK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF155WBE bigWig bigWig signal of unique reads ce10 ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF219CFB/ 10022683 Kevin White, UChicago 3565e8a9f45017d18148afc0b5a4de34 https://www.encodeproject.org/files/ENCFF155WBE/@@download/ENCFF155WBE.bigWig released s3://encode-public/2016/10/20/79e7230f-ba76-4a71-a6c3-38dc2e63053a/ENCFF155WBE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF537PUG bigWig bigWig signal of unique reads ce11 ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF181NLF/ 10018946 Kevin White, UChicago 51baa22071a8082a5196c2d98a23fd2d https://www.encodeproject.org/files/ENCFF537PUG/@@download/ENCFF537PUG.bigWig released s3://encode-public/2016/10/21/b6068ca5-16e2-4f60-a0ad-162d443470f1/ENCFF537PUG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF122PLJ bigWig bigWig read-depth normalized signal ce11 ENCSR520RET Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF181NLF/ 10017723 Kevin White, UChicago 0c82da960c341602eff40105693c6621 https://www.encodeproject.org/files/ENCFF122PLJ/@@download/ENCFF122PLJ.bigWig released s3://encode-public/2016/10/21/4382d786-6339-49f0-a30d-b57ebb06a4b8/ENCFF122PLJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF368ARP fastq fastq reads ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 130877866 Michael Snyder, Stanford 96d45d4420622a7b181b447395f7dbd5 https://www.encodeproject.org/files/ENCFF368ARP/@@download/ENCFF368ARP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ad259ed7-0f6d-48db-86f5-cc4e95767ede/ENCFF368ARP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF209GRU fastq fastq reads ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 151963426 Michael Snyder, Stanford f15a8e34387df2143289307ed9b12fda https://www.encodeproject.org/files/ENCFF209GRU/@@download/ENCFF209GRU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/28ecab56-6ff4-4dbf-90d0-4981e0554850/ENCFF209GRU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF369PIM bam bam alignments ce10 ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF368ARP/, /files/ENCFF209GRU/, /files/ENCFF987UMF/ 373046394 Kevin White, UChicago 0044ac9d343b3aec3ea63e13166f4fc5 https://www.encodeproject.org/files/ENCFF369PIM/@@download/ENCFF369PIM.bam released s3://encode-public/2016/10/18/c777e99f-0a7f-48a8-9d1e-ba64f07ccb57/ENCFF369PIM.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF791NOI bam bam alignments ce11 ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF368ARP/, /files/ENCFF209GRU/, /files/ENCFF586MOL/ 373456937 Kevin White, UChicago 7413c5ebd6b74a85370c287e7dc373f5 https://www.encodeproject.org/files/ENCFF791NOI/@@download/ENCFF791NOI.bam released s3://encode-public/2016/10/19/e64ddfa1-7274-4c6e-9578-16bf44207e8e/ENCFF791NOI.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF998PRB bigWig bigWig read-depth normalized signal ce10 ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF369PIM/ 9975242 Kevin White, UChicago a1c4741d29b9e637428f4c777c31cdfb https://www.encodeproject.org/files/ENCFF998PRB/@@download/ENCFF998PRB.bigWig released s3://encode-public/2016/10/20/f086466e-f042-41fc-934f-cc5dc645b911/ENCFF998PRB.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF636IXM bigWig bigWig signal of unique reads ce10 ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF369PIM/ 10025853 Kevin White, UChicago 649267d213e0787bb5bacd60d8d4634f https://www.encodeproject.org/files/ENCFF636IXM/@@download/ENCFF636IXM.bigWig released s3://encode-public/2016/10/20/e6a4bee0-864e-411f-8498-7ec874e336dc/ENCFF636IXM.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF630IID bigWig bigWig read-depth normalized signal ce11 ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF791NOI/ 9972293 Kevin White, UChicago 8708a9540df82cd1a9ca3a2567eef05f https://www.encodeproject.org/files/ENCFF630IID/@@download/ENCFF630IID.bigWig released s3://encode-public/2016/10/21/2008ca29-5c98-4e70-a0d6-df0057de45b8/ENCFF630IID.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF233HIH bigWig bigWig signal of unique reads ce11 ENCSR067SKF Control ChIP-seq /worm-donors/ENCDO627LOO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172460/'], '@type': ['Target', 'Item'], 'name': 'nhr-23-celegans', 'label': 'nhr-23', '@id': '/targets/nhr-23-celegans/', 'title': 'nhr-23 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0cdf4ac-b835-42ea-bba0-6cd78616aa25', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF791NOI/ 10024144 Kevin White, UChicago a2fa6c826fd27020be05d34d0cfe8619 https://www.encodeproject.org/files/ENCFF233HIH/@@download/ENCFF233HIH.bigWig released s3://encode-public/2016/10/21/d3d87828-b85f-4872-92aa-8ea6ef483262/ENCFF233HIH.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF959EYL fastq fastq reads ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF541ZMR/ 3227190555 Michael Snyder, Stanford def3e84980e5b90919ff4e8bfc9e614a SRA:SRR6213393 https://www.encodeproject.org/files/ENCFF959EYL/@@download/ENCFF959EYL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/3b8cc531-10ca-458f-ba39-2a6347717787/ENCFF959EYL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF541ZMR fastq fastq reads ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF959EYL/ 3779856173 Michael Snyder, Stanford 3026e23e13697def2581f76e3336e1e2 SRA:SRR6213393 https://www.encodeproject.org/files/ENCFF541ZMR/@@download/ENCFF541ZMR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/a8ce420e-01ed-4bbc-90d7-41fd93f9442c/ENCFF541ZMR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF379CJB bam bam unfiltered alignments GRCh38 ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF541ZMR/, /files/ENCFF643CGH/, /files/ENCFF959EYL/ 6416104010 ENCODE Processing Pipeline e039f89a1b629fabb770cdda28e9373e https://www.encodeproject.org/files/ENCFF379CJB/@@download/ENCFF379CJB.bam released s3://encode-public/2017/01/27/9accdf3c-ae84-4815-9e72-5537d8240b1f/ENCFF379CJB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF556CQT bam bam alignments GRCh38 ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF541ZMR/, /files/ENCFF643CGH/, /files/ENCFF959EYL/ 4910296051 ENCODE Processing Pipeline f9340c14a541a4d24bd16a530f81da83 https://www.encodeproject.org/files/ENCFF556CQT/@@download/ENCFF556CQT.bam released s3://encode-public/2017/01/27/43c49010-bd4c-44de-94ea-9fd4e2562c86/ENCFF556CQT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF729XLF bam bam unfiltered alignments hg19 ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF541ZMR/, /files/ENCFF807MUK/, /files/ENCFF959EYL/ 6408769440 ENCODE Processing Pipeline 0145999a1657d110b27f03893f9acd7a https://www.encodeproject.org/files/ENCFF729XLF/@@download/ENCFF729XLF.bam released s3://encode-public/2017/01/28/af2027d3-32a8-4ac8-be0c-526c3734fbff/ENCFF729XLF.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF570ZSH bam bam alignments hg19 ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF541ZMR/, /files/ENCFF807MUK/, /files/ENCFF959EYL/ 4903044787 ENCODE Processing Pipeline 0be01a70f932dbedab3b365c85b8ee5e https://www.encodeproject.org/files/ENCFF570ZSH/@@download/ENCFF570ZSH.bam released s3://encode-public/2017/01/28/f2e3899e-6780-4b36-adea-021697faa1a8/ENCFF570ZSH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF480MCL bam bam alignments GRCh38 ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF959EYL/, /files/ENCFF541ZMR/ 4747872800 ENCODE Processing Pipeline 80e9c48deb1585102f8f1d89a6adfec1 https://www.encodeproject.org/files/ENCFF480MCL/@@download/ENCFF480MCL.bam released s3://encode-public/2020/06/02/3e18c19e-0977-4950-80ab-b873fd4739a6/ENCFF480MCL.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF383RAM bam bam unfiltered alignments GRCh38 ENCSR641MGI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF959EYL/, /files/ENCFF541ZMR/ 6424216602 ENCODE Processing Pipeline 1c5e28088555e39466cff37a0e7041da https://www.encodeproject.org/files/ENCFF383RAM/@@download/ENCFF383RAM.bam released s3://encode-public/2020/06/02/01191987-7881-43df-ba91-d806a997a2d8/ENCFF383RAM.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF057NJG fastq fastq reads ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 70017009 Michael Snyder, Stanford 0a80effc317210e1632b954cc4579cc0 https://www.encodeproject.org/files/ENCFF057NJG/@@download/ENCFF057NJG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/415ac415-e73d-4054-bd9c-61c9bb70f185/ENCFF057NJG.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF927HOU fastq fastq reads ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 77208029 Michael Snyder, Stanford 3533d3dfdd5149b1593814a738b9474e https://www.encodeproject.org/files/ENCFF927HOU/@@download/ENCFF927HOU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/9885d148-2681-4301-950b-dea256f56f7c/ENCFF927HOU.fastq.gz missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF896WCZ bam bam alignments ce10 ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF057NJG/, /files/ENCFF927HOU/, /files/ENCFF987UMF/ 198250635 Kevin White, UChicago 7f611abd76e5438837b45349b3e704ea https://www.encodeproject.org/files/ENCFF896WCZ/@@download/ENCFF896WCZ.bam released s3://encode-public/2017/04/27/48924e20-8a75-4a32-ae17-8a6f0d7cc970/ENCFF896WCZ.bam Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF477GDG bam bam alignments ce11 ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF057NJG/, /files/ENCFF927HOU/, /files/ENCFF586MOL/ 198499574 Kevin White, UChicago dce73764cddabee9b192aa01ad59cbbf https://www.encodeproject.org/files/ENCFF477GDG/@@download/ENCFF477GDG.bam released s3://encode-public/2017/04/27/bfea9136-5858-424a-9c99-26956df37d1b/ENCFF477GDG.bam Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF389LIK bigWig bigWig read-depth normalized signal ce10 ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF896WCZ/ 9987124 Kevin White, UChicago e48f5bf0aba3bcb142319cb5a12641ec https://www.encodeproject.org/files/ENCFF389LIK/@@download/ENCFF389LIK.bigWig released s3://encode-public/2017/04/29/cc94156f-7101-4337-817a-808e7bec455c/ENCFF389LIK.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF182SKP bigWig bigWig signal of unique reads ce10 ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF896WCZ/ 9989632 Kevin White, UChicago 24226bcc04b8b8486e02c0eb5fca6f1c https://www.encodeproject.org/files/ENCFF182SKP/@@download/ENCFF182SKP.bigWig released s3://encode-public/2017/04/29/40ee6bda-b607-4067-a79b-c5e0312b669f/ENCFF182SKP.bigWig Lab custom ce10 archived missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF155QNP bigWig bigWig read-depth normalized signal ce11 ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF477GDG/ 9981416 Kevin White, UChicago fe60a1d063a973bd3561578f193ae824 https://www.encodeproject.org/files/ENCFF155QNP/@@download/ENCFF155QNP.bigWig released s3://encode-public/2017/04/29/2a5c8b7d-4230-41e1-8efa-a4ab702d962c/ENCFF155QNP.bigWig Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF762XCU bigWig bigWig signal of unique reads ce11 ENCSR538KZZ Control ChIP-seq /worm-donors/ENCDO116LAZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192082/'], '@type': ['Target', 'Item'], 'name': 'unc-55-celegans', 'label': 'unc-55', '@id': '/targets/unc-55-celegans/', 'title': 'unc-55 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '43021879-f113-45f3-a689-6ff9d1037db0', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF477GDG/ 9982261 Kevin White, UChicago 0c2544b4019e73bc0c9bf4d0637bbbce https://www.encodeproject.org/files/ENCFF762XCU/@@download/ENCFF762XCU.bigWig released s3://encode-public/2017/04/29/0cb30c79-347c-453a-8ca5-617577c87424/ENCFF762XCU.bigWig Lab custom ce11 released missing genetic modification reagents, missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF423TLJ fastq fastq reads ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF635NCC/ 3328791005 Michael Snyder, Stanford dcdac07f796d9a0ca76563bc7d95d9c4 SRA:SRR6214326 https://www.encodeproject.org/files/ENCFF423TLJ/@@download/ENCFF423TLJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/61ba4b85-1b90-4775-b6aa-70461c97371c/ENCFF423TLJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF635NCC fastq fastq reads ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF423TLJ/ 2884362049 Michael Snyder, Stanford c32f47260671153e238584625372da5d SRA:SRR6214326 https://www.encodeproject.org/files/ENCFF635NCC/@@download/ENCFF635NCC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/e837a436-aaeb-4592-ae55-dae41d41a4bd/ENCFF635NCC.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF175WBX bam bam unfiltered alignments GRCh38 ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF635NCC/, /files/ENCFF643CGH/, /files/ENCFF423TLJ/ 5725509357 ENCODE Processing Pipeline c8dc75f0907bacc403ad7c5175b291e4 https://www.encodeproject.org/files/ENCFF175WBX/@@download/ENCFF175WBX.bam released s3://encode-public/2017/01/27/8e03b504-dde1-40f6-8c7e-e923280ad811/ENCFF175WBX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF051LKD bam bam alignments GRCh38 ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF635NCC/, /files/ENCFF643CGH/, /files/ENCFF423TLJ/ 4134985157 ENCODE Processing Pipeline 456e3788155e386dbf68a10d0f58e432 https://www.encodeproject.org/files/ENCFF051LKD/@@download/ENCFF051LKD.bam released s3://encode-public/2017/01/27/e1a3cd75-3af2-4e9b-9020-7d24236dcd4c/ENCFF051LKD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF830XHI bam bam unfiltered alignments hg19 ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF635NCC/, /files/ENCFF807MUK/, /files/ENCFF423TLJ/ 5717918034 ENCODE Processing Pipeline cfe5aaf026dfc9329f3ba9393ff035e2 https://www.encodeproject.org/files/ENCFF830XHI/@@download/ENCFF830XHI.bam released s3://encode-public/2017/01/28/9bcc03bc-b1c8-48d4-9e91-15bbbb7c3bae/ENCFF830XHI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF679FAU bam bam alignments hg19 ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF635NCC/, /files/ENCFF807MUK/, /files/ENCFF423TLJ/ 4127475284 ENCODE Processing Pipeline 732745609756c73f2a83d19f91e31355 https://www.encodeproject.org/files/ENCFF679FAU/@@download/ENCFF679FAU.bam released s3://encode-public/2017/01/28/1efdf024-dae6-4e1b-94e9-c244cc696a36/ENCFF679FAU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF024MRD bam bam unfiltered alignments GRCh38 ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF635NCC/, /files/ENCFF423TLJ/ 5721225319 ENCODE Processing Pipeline 4541d7a29de9e0234c440116f01ce16f https://www.encodeproject.org/files/ENCFF024MRD/@@download/ENCFF024MRD.bam released s3://encode-public/2020/06/02/7ed832bd-17eb-4647-86d0-3dabe252e301/ENCFF024MRD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF938ZDQ bam bam alignments GRCh38 ENCSR997NXO Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF635NCC/, /files/ENCFF423TLJ/ 4026111824 ENCODE Processing Pipeline ed0378c02be67a836f4c62f23a40ac29 https://www.encodeproject.org/files/ENCFF938ZDQ/@@download/ENCFF938ZDQ.bam released s3://encode-public/2020/06/02/a820d878-c2ac-4c9f-a1c0-03fc1d24935d/ENCFF938ZDQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF160FTY fastq fastq reads ENCSR349JRD Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-866'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/124961/'], '@type': ['Target', 'Item'], 'name': 'ZFP3-human', 'label': 'ZFP3', '@id': '/targets/ZFP3-human/', 'title': 'ZFP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '27290977-94e1-4ac7-ab9b-c6d6d3cb7382', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF424KXJ/ 2739220092 Michael Snyder, Stanford ea5b63d0fb895a15818700d94711cf96 https://www.encodeproject.org/files/ENCFF160FTY/@@download/ENCFF160FTY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/27dd8753-0b51-4bc8-bc34-771c4c5fe976/ENCFF160FTY.fastq.gz mild to moderate bottlenecking ENCFF424KXJ fastq fastq reads ENCSR349JRD Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-866'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/124961/'], '@type': ['Target', 'Item'], 'name': 'ZFP3-human', 'label': 'ZFP3', '@id': '/targets/ZFP3-human/', 'title': 'ZFP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '27290977-94e1-4ac7-ab9b-c6d6d3cb7382', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF160FTY/ 2968532888 Michael Snyder, Stanford fb1170688b45c67c4279875471a9cd98 https://www.encodeproject.org/files/ENCFF424KXJ/@@download/ENCFF424KXJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/023a1288-525c-4844-a3bd-95d94f405074/ENCFF424KXJ.fastq.gz mild to moderate bottlenecking ENCFF845WXQ bam bam unfiltered alignments GRCh38 ENCSR349JRD Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-866'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/124961/'], '@type': ['Target', 'Item'], 'name': 'ZFP3-human', 'label': 'ZFP3', '@id': '/targets/ZFP3-human/', 'title': 'ZFP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '27290977-94e1-4ac7-ab9b-c6d6d3cb7382', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF160FTY/, /files/ENCFF424KXJ/ 5492130859 ENCODE Processing Pipeline 0b2cda01eeb5008c82fa74053ba88dfd https://www.encodeproject.org/files/ENCFF845WXQ/@@download/ENCFF845WXQ.bam released s3://encode-public/2020/04/20/771640e4-3a42-4b4c-8a26-94a55fb9fa60/ENCFF845WXQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF940AXX bam bam alignments GRCh38 ENCSR349JRD Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-866'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/124961/'], '@type': ['Target', 'Item'], 'name': 'ZFP3-human', 'label': 'ZFP3', '@id': '/targets/ZFP3-human/', 'title': 'ZFP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '27290977-94e1-4ac7-ab9b-c6d6d3cb7382', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF160FTY/, /files/ENCFF424KXJ/ 3798832875 ENCODE Processing Pipeline 4025b18ec871bbd394f0e0c6124e0990 https://www.encodeproject.org/files/ENCFF940AXX/@@download/ENCFF940AXX.bam released s3://encode-public/2020/04/20/cfd7c814-c1cc-41f0-bcc0-e0b09e8013af/ENCFF940AXX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF667NZV fastq fastq reads ENCSR941FHT Control ChIP-seq /fly-donors/ENCDO836WWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35770/'], '@type': ['Target', 'Item'], 'name': 'CG12769-dmelanogaster', 'label': 'CG12769', '@id': '/targets/CG12769-dmelanogaster/', 'title': 'CG12769 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a70da6e4-b1ab-4848-8996-8adc9189bc6f', 'status': 'released'} dm3 2R 3937615 3957045 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 337325664 Kevin White, UChicago 2dee510ca13e7805495b89462d7642f4 https://www.encodeproject.org/files/ENCFF667NZV/@@download/ENCFF667NZV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/1efeb124-f30b-4c3c-bd52-e1830d9d574a/ENCFF667NZV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF654MBM bam bam alignments dm6 ENCSR941FHT Control ChIP-seq /fly-donors/ENCDO836WWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35770/'], '@type': ['Target', 'Item'], 'name': 'CG12769-dmelanogaster', 'label': 'CG12769', '@id': '/targets/CG12769-dmelanogaster/', 'title': 'CG12769 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a70da6e4-b1ab-4848-8996-8adc9189bc6f', 'status': 'released'} dm3 2R 3937615 3957045 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF667NZV/, /files/ENCFF479RCH/ 440115393 Kevin White, UChicago a631073948f503fe6eefafed059c4997 https://www.encodeproject.org/files/ENCFF654MBM/@@download/ENCFF654MBM.bam released s3://encode-public/2019/04/13/4f2ccd90-d1c2-4658-b15f-b998ef3112bb/ENCFF654MBM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF159GMX bigWig bigWig read-depth normalized signal dm6 ENCSR941FHT Control ChIP-seq /fly-donors/ENCDO836WWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35770/'], '@type': ['Target', 'Item'], 'name': 'CG12769-dmelanogaster', 'label': 'CG12769', '@id': '/targets/CG12769-dmelanogaster/', 'title': 'CG12769 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a70da6e4-b1ab-4848-8996-8adc9189bc6f', 'status': 'released'} dm3 2R 3937615 3957045 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654MBM/ 17486701 Kevin White, UChicago 18d5b8179c05fe474b3017087852ce86 https://www.encodeproject.org/files/ENCFF159GMX/@@download/ENCFF159GMX.bigWig released s3://encode-public/2019/04/16/174df4ae-da89-4aff-abd8-9f0945189da6/ENCFF159GMX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF163BOP bigWig bigWig signal of unique reads dm6 ENCSR941FHT Control ChIP-seq /fly-donors/ENCDO836WWL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35770/'], '@type': ['Target', 'Item'], 'name': 'CG12769-dmelanogaster', 'label': 'CG12769', '@id': '/targets/CG12769-dmelanogaster/', 'title': 'CG12769 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a70da6e4-b1ab-4848-8996-8adc9189bc6f', 'status': 'released'} dm3 2R 3937615 3957045 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654MBM/ 17508868 Kevin White, UChicago 8ff9d2d67f73e0e04eec37c81f25e234 https://www.encodeproject.org/files/ENCFF163BOP/@@download/ENCFF163BOP.bigWig released s3://encode-public/2019/04/16/d9cac361-4455-4958-9297-8881eba2aa12/ENCFF163BOP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF384BNI fastq fastq reads ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 129058679 Michael Snyder, Stanford 39dd775e9d7f6e998ba324c4d4d1d271 https://www.encodeproject.org/files/ENCFF384BNI/@@download/ENCFF384BNI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/f0837269-44ca-46bb-9109-4c55d8e8dff8/ENCFF384BNI.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF495MDQ fastq fastq reads ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 120717892 Michael Snyder, Stanford 078460940e81c0ad54bf915e4deb48c1 https://www.encodeproject.org/files/ENCFF495MDQ/@@download/ENCFF495MDQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/9ab84c5e-97d9-4066-930c-65a4f31e76b3/ENCFF495MDQ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF515IAS bam bam alignments ce10 ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF987UMF/, /files/ENCFF495MDQ/, /files/ENCFF384BNI/ 244339857 Kevin White, UChicago 312ce85d8bfb63320ee5fc85e6a9cf22 https://www.encodeproject.org/files/ENCFF515IAS/@@download/ENCFF515IAS.bam released s3://encode-public/2017/04/27/de00b9de-c515-4a17-ab3b-26c584e5d011/ENCFF515IAS.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF394EWB bam bam alignments ce11 ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF586MOL/, /files/ENCFF495MDQ/, /files/ENCFF384BNI/ 244540329 Kevin White, UChicago 4ec49699e4a995dacdb84fcc95236293 https://www.encodeproject.org/files/ENCFF394EWB/@@download/ENCFF394EWB.bam released s3://encode-public/2017/04/27/f9d07f01-b66a-449c-a985-5d4562752668/ENCFF394EWB.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF652BSA bigWig bigWig signal of unique reads ce10 ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF515IAS/ 10025915 Kevin White, UChicago 6e578a3f008e283829848e09455d98c0 https://www.encodeproject.org/files/ENCFF652BSA/@@download/ENCFF652BSA.bigWig released s3://encode-public/2017/04/29/49d305f1-4007-4505-a6bb-ac4a530dd5d1/ENCFF652BSA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF953NCK bigWig bigWig read-depth normalized signal ce10 ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF515IAS/ 10019456 Kevin White, UChicago 61013eb13712a1005da5d8b2c9f67d72 https://www.encodeproject.org/files/ENCFF953NCK/@@download/ENCFF953NCK.bigWig released s3://encode-public/2017/04/29/66b2cc91-f6b8-4ad6-a454-aa8b4a4e068f/ENCFF953NCK.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF671BHA bigWig bigWig signal of unique reads ce11 ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF394EWB/ 10025812 Kevin White, UChicago 15f5affa5b4aabbfdb1290d1099190c6 https://www.encodeproject.org/files/ENCFF671BHA/@@download/ENCFF671BHA.bigWig released s3://encode-public/2017/04/29/18a38f31-7e0b-42b4-b50d-653d5dfab5ec/ENCFF671BHA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF660PJA bigWig bigWig read-depth normalized signal ce11 ENCSR668TAO Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF394EWB/ 10018552 Kevin White, UChicago 00f4cbc8461f72ff1733555bc1b1facf https://www.encodeproject.org/files/ENCFF660PJA/@@download/ENCFF660PJA.bigWig released s3://encode-public/2017/04/29/ec6ed56d-7b1f-4691-b9ce-9e62ddfe9342/ENCFF660PJA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF909VIW fastq fastq reads ENCSR616LTS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23598/'], '@type': ['Target', 'Item'], 'name': 'PATZ1-human', 'label': 'PATZ1', '@id': '/targets/PATZ1-human/', 'title': 'PATZ1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d469e27-b00c-4379-ad2d-97e3182466d4', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF793ETX/ 2523535650 Michael Snyder, Stanford ffa9509fa4fe0b53f5b8f738d7849404 SRA:SRR14107662 https://www.encodeproject.org/files/ENCFF909VIW/@@download/ENCFF909VIW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/e5b93485-1f78-4963-9e81-fa662a81e920/ENCFF909VIW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF793ETX fastq fastq reads ENCSR616LTS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23598/'], '@type': ['Target', 'Item'], 'name': 'PATZ1-human', 'label': 'PATZ1', '@id': '/targets/PATZ1-human/', 'title': 'PATZ1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d469e27-b00c-4379-ad2d-97e3182466d4', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF909VIW/ 2872965151 Michael Snyder, Stanford 1d7d6389bcc84abdfbfc4411d2d699f6 SRA:SRR14107662 https://www.encodeproject.org/files/ENCFF793ETX/@@download/ENCFF793ETX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/e88b0f14-93d2-429c-a2ba-bafca90afed2/ENCFF793ETX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF903HMS bam bam unfiltered alignments GRCh38 ENCSR616LTS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23598/'], '@type': ['Target', 'Item'], 'name': 'PATZ1-human', 'label': 'PATZ1', '@id': '/targets/PATZ1-human/', 'title': 'PATZ1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d469e27-b00c-4379-ad2d-97e3182466d4', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF909VIW/, /files/ENCFF793ETX/, /files/ENCFF110MCL/ 5157946910 ENCODE Processing Pipeline cd7c0807a9988465d8940662ede8f5d7 https://www.encodeproject.org/files/ENCFF903HMS/@@download/ENCFF903HMS.bam released s3://encode-public/2020/06/24/05ddf40a-d5a5-4d39-87a6-56372b89bbc0/ENCFF903HMS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF277LBX bam bam alignments GRCh38 ENCSR616LTS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23598/'], '@type': ['Target', 'Item'], 'name': 'PATZ1-human', 'label': 'PATZ1', '@id': '/targets/PATZ1-human/', 'title': 'PATZ1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d469e27-b00c-4379-ad2d-97e3182466d4', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF909VIW/, /files/ENCFF793ETX/, /files/ENCFF110MCL/ 3378909028 ENCODE Processing Pipeline eef880bafca6ca1f0565be2795314488 https://www.encodeproject.org/files/ENCFF277LBX/@@download/ENCFF277LBX.bam released s3://encode-public/2020/06/24/4c221f31-f688-43b4-ac14-81b1c3ad5d22/ENCFF277LBX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF943DWF fastq fastq reads ENCSR641PEJ Control ChIP-seq /fly-donors/ENCDO998XPT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38012/'], '@type': ['Target', 'Item'], 'name': 'Kr-dmelanogaster', 'label': 'Kr', '@id': '/targets/Kr-dmelanogaster/', 'title': 'Kr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'facd6f4e-e55e-4cec-85c6-5d089d738533', 'status': 'released'} dm3 2R 21056453 21144276 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 416906890 Kevin White, UChicago c9480bb3dc4f1a665ec17d3d965c8882 https://www.encodeproject.org/files/ENCFF943DWF/@@download/ENCFF943DWF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/aafcf24d-f9b8-4828-bd50-cd4c8b3667fc/ENCFF943DWF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF819JEP bam bam alignments dm3 ENCSR641PEJ Control ChIP-seq /fly-donors/ENCDO998XPT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38012/'], '@type': ['Target', 'Item'], 'name': 'Kr-dmelanogaster', 'label': 'Kr', '@id': '/targets/Kr-dmelanogaster/', 'title': 'Kr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'facd6f4e-e55e-4cec-85c6-5d089d738533', 'status': 'released'} dm3 2R 21056453 21144276 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF943DWF/, /files/ENCFF059UHX/ 558967904 Kevin White, UChicago df8731b16de6d970df4985d6759c01d1 https://www.encodeproject.org/files/ENCFF819JEP/@@download/ENCFF819JEP.bam released s3://encode-public/2016/12/22/3423dc2a-7429-44e3-9256-61352d47d39d/ENCFF819JEP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF324ZAU bam bam alignments dm6 ENCSR641PEJ Control ChIP-seq /fly-donors/ENCDO998XPT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38012/'], '@type': ['Target', 'Item'], 'name': 'Kr-dmelanogaster', 'label': 'Kr', '@id': '/targets/Kr-dmelanogaster/', 'title': 'Kr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'facd6f4e-e55e-4cec-85c6-5d089d738533', 'status': 'released'} dm3 2R 21056453 21144276 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF943DWF/, /files/ENCFF479RCH/ 550837181 Kevin White, UChicago 4b2bd9b52c96e93ca42db86704139235 https://www.encodeproject.org/files/ENCFF324ZAU/@@download/ENCFF324ZAU.bam released s3://encode-public/2016/12/22/893c86e8-c7f5-4efc-840a-4ee56d5c1ecf/ENCFF324ZAU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF381JUE bigWig bigWig read-depth normalized signal dm3 ENCSR641PEJ Control ChIP-seq /fly-donors/ENCDO998XPT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38012/'], '@type': ['Target', 'Item'], 'name': 'Kr-dmelanogaster', 'label': 'Kr', '@id': '/targets/Kr-dmelanogaster/', 'title': 'Kr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'facd6f4e-e55e-4cec-85c6-5d089d738533', 'status': 'released'} dm3 2R 21056453 21144276 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF819JEP/ 15315314 Kevin White, UChicago 7aa493f9f1a3b73366b3ca28d821aa53 https://www.encodeproject.org/files/ENCFF381JUE/@@download/ENCFF381JUE.bigWig released s3://encode-public/2017/01/03/d48299f5-3f35-4e8a-899d-b1234ed51b32/ENCFF381JUE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF213GFG bigWig bigWig signal of unique reads dm3 ENCSR641PEJ Control ChIP-seq /fly-donors/ENCDO998XPT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38012/'], '@type': ['Target', 'Item'], 'name': 'Kr-dmelanogaster', 'label': 'Kr', '@id': '/targets/Kr-dmelanogaster/', 'title': 'Kr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'facd6f4e-e55e-4cec-85c6-5d089d738533', 'status': 'released'} dm3 2R 21056453 21144276 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF819JEP/ 15331940 Kevin White, UChicago 8df83b05c551e04ca727dcd7460eafa2 https://www.encodeproject.org/files/ENCFF213GFG/@@download/ENCFF213GFG.bigWig released s3://encode-public/2017/01/03/101318d4-3962-4a1e-9867-a26abda7b89d/ENCFF213GFG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF339YQD bigWig bigWig signal of unique reads dm6 ENCSR641PEJ Control ChIP-seq /fly-donors/ENCDO998XPT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38012/'], '@type': ['Target', 'Item'], 'name': 'Kr-dmelanogaster', 'label': 'Kr', '@id': '/targets/Kr-dmelanogaster/', 'title': 'Kr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'facd6f4e-e55e-4cec-85c6-5d089d738533', 'status': 'released'} dm3 2R 21056453 21144276 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF324ZAU/ 17437064 Kevin White, UChicago dd3e15934ceb33ff881d10be0fa1b49d https://www.encodeproject.org/files/ENCFF339YQD/@@download/ENCFF339YQD.bigWig released s3://encode-public/2017/01/04/1584d00f-04a0-415c-a5c1-6a33a18604c7/ENCFF339YQD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF620CGQ bigWig bigWig read-depth normalized signal dm6 ENCSR641PEJ Control ChIP-seq /fly-donors/ENCDO998XPT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38012/'], '@type': ['Target', 'Item'], 'name': 'Kr-dmelanogaster', 'label': 'Kr', '@id': '/targets/Kr-dmelanogaster/', 'title': 'Kr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'facd6f4e-e55e-4cec-85c6-5d089d738533', 'status': 'released'} dm3 2R 21056453 21144276 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF324ZAU/ 17405832 Kevin White, UChicago 5c9e1350cc595f4cca8e514dfd40d39d https://www.encodeproject.org/files/ENCFF620CGQ/@@download/ENCFF620CGQ.bigWig released s3://encode-public/2017/01/04/440600d3-6562-4eef-b7b0-a3cc8c92bde0/ENCFF620CGQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF648HZK fastq fastq reads ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 120741206 Michael Snyder, Stanford 7bdced05c6de9ad2bb45267241a54d93 https://www.encodeproject.org/files/ENCFF648HZK/@@download/ENCFF648HZK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/eb7c0c6d-3d47-4c1e-b837-4624b63ae09c/ENCFF648HZK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF520DZC fastq fastq reads ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 131382636 Michael Snyder, Stanford fb1ceb94da44894832587d424feaa97a https://www.encodeproject.org/files/ENCFF520DZC/@@download/ENCFF520DZC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/5c61d5e3-16a7-437e-abfc-689eda946d50/ENCFF520DZC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF870WNP bam bam alignments ce10 ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF520DZC/, /files/ENCFF648HZK/, /files/ENCFF987UMF/ 335573154 Kevin White, UChicago ed5f580f045b5d67df3c5645f8d26292 https://www.encodeproject.org/files/ENCFF870WNP/@@download/ENCFF870WNP.bam released s3://encode-public/2017/04/27/ee509cd5-85e8-46a8-91c6-82c66f6a2893/ENCFF870WNP.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF608FFL bam bam alignments ce11 ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF520DZC/, /files/ENCFF648HZK/, /files/ENCFF586MOL/ 335969207 Kevin White, UChicago 942934674fa40710f6477e3e2db85f56 https://www.encodeproject.org/files/ENCFF608FFL/@@download/ENCFF608FFL.bam released s3://encode-public/2017/04/27/d9ea2903-1a30-4251-b1b8-7a4500f79b40/ENCFF608FFL.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF574CFT bigWig bigWig read-depth normalized signal ce10 ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF870WNP/ 10011099 Kevin White, UChicago 83101c153cdec407ef4b530a8bd59864 https://www.encodeproject.org/files/ENCFF574CFT/@@download/ENCFF574CFT.bigWig released s3://encode-public/2017/04/29/bf7c9f17-8208-4eda-97b8-5d76788ba488/ENCFF574CFT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF559LAN bigWig bigWig signal of unique reads ce10 ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF870WNP/ 10073297 Kevin White, UChicago ba879240fdc9fc63b750f4bff460d514 https://www.encodeproject.org/files/ENCFF559LAN/@@download/ENCFF559LAN.bigWig released s3://encode-public/2017/04/29/ca9a1da0-fb27-49ff-826d-f6b36f359a9c/ENCFF559LAN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF627HEI bigWig bigWig signal of unique reads ce11 ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF608FFL/ 10069099 Kevin White, UChicago aedc42db34ebc7395a20ea3db87c7478 https://www.encodeproject.org/files/ENCFF627HEI/@@download/ENCFF627HEI.bigWig released s3://encode-public/2017/04/29/c4986079-2aa2-4481-b802-769620c13ba6/ENCFF627HEI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF655WCN bigWig bigWig read-depth normalized signal ce11 ENCSR487JHP Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF608FFL/ 10008967 Kevin White, UChicago 08eb516dbe292dd866d6cd446f0b34d1 https://www.encodeproject.org/files/ENCFF655WCN/@@download/ENCFF655WCN.bigWig released s3://encode-public/2017/04/29/0383642d-db63-46de-9fe4-9fc8bca828fb/ENCFF655WCN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF565AAU fastq fastq reads ENCSR671VTN Control ChIP-seq /worm-donors/ENCDO960UAH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 27 single-ended 68906184 Michael Snyder, Stanford 6f06237a83afc2d0fda603c37c992e81 https://www.encodeproject.org/files/ENCFF565AAU/@@download/ENCFF565AAU.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/b841efb3-e6f1-42dd-ba9c-e1107667c88b/ENCFF565AAU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF194IHL fastq fastq reads ENCSR671VTN Control ChIP-seq /worm-donors/ENCDO960UAH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 27 single-ended 131755116 Michael Snyder, Stanford 02d87238e72b244a08992c902fc3c329 https://www.encodeproject.org/files/ENCFF194IHL/@@download/ENCFF194IHL.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/18/3686f5b3-400a-4652-9428-40dde915eea0/ENCFF194IHL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF604DQV fastq fastq reads ENCSR663DVJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1979'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/639/'], '@type': ['Target', 'Item'], 'name': 'PRDM1-human', 'label': 'PRDM1', '@id': '/targets/PRDM1-human/', 'title': 'PRDM1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0e8446e0-3f10-465f-9bd1-399193b1be02', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF431EEL/ 2558235268 Michael Snyder, Stanford dd50de82f4daef063e8f66bddbfc5b62 SRA:SRR14107821 https://www.encodeproject.org/files/ENCFF604DQV/@@download/ENCFF604DQV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/5ac9299a-317c-45e5-8c36-555505974cc4/ENCFF604DQV.fastq.gz mild to moderate bottlenecking ENCFF431EEL fastq fastq reads ENCSR663DVJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1979'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/639/'], '@type': ['Target', 'Item'], 'name': 'PRDM1-human', 'label': 'PRDM1', '@id': '/targets/PRDM1-human/', 'title': 'PRDM1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0e8446e0-3f10-465f-9bd1-399193b1be02', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF604DQV/ 2362307099 Michael Snyder, Stanford 6fa91ae23bcb8b61de1f73bb718c6a61 SRA:SRR14107821 https://www.encodeproject.org/files/ENCFF431EEL/@@download/ENCFF431EEL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/42aefd9e-7850-4d98-99b3-856a77629ab1/ENCFF431EEL.fastq.gz mild to moderate bottlenecking ENCFF110AEZ bam bam unfiltered alignments GRCh38 ENCSR663DVJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1979'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/639/'], '@type': ['Target', 'Item'], 'name': 'PRDM1-human', 'label': 'PRDM1', '@id': '/targets/PRDM1-human/', 'title': 'PRDM1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0e8446e0-3f10-465f-9bd1-399193b1be02', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF431EEL/, /files/ENCFF604DQV/ 4689093091 ENCODE Processing Pipeline 3c50fcc715de6836a52c36b268e43d17 https://www.encodeproject.org/files/ENCFF110AEZ/@@download/ENCFF110AEZ.bam released s3://encode-public/2020/04/20/4b01f2be-47b9-48c5-9ed1-e36f7b2f4300/ENCFF110AEZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF679NES bam bam alignments GRCh38 ENCSR663DVJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1979'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/639/'], '@type': ['Target', 'Item'], 'name': 'PRDM1-human', 'label': 'PRDM1', '@id': '/targets/PRDM1-human/', 'title': 'PRDM1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0e8446e0-3f10-465f-9bd1-399193b1be02', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF431EEL/, /files/ENCFF604DQV/ 3665299228 ENCODE Processing Pipeline 06a0a35dd5500051955c15df8a2bb38c https://www.encodeproject.org/files/ENCFF679NES/@@download/ENCFF679NES.bam released s3://encode-public/2020/04/20/bd2017e6-6e14-471b-bf4e-1f1083966c9a/ENCFF679NES.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF890GMZ fastq fastq reads ENCSR017NGB Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 143460059 Michael Snyder, Stanford 7d6b84899301bf26c7df594a415948fc https://www.encodeproject.org/files/ENCFF890GMZ/@@download/ENCFF890GMZ.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/d34609d0-745a-4e72-954b-4ea698147851/ENCFF890GMZ.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF677KCA fastq fastq reads ENCSR017NGB Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 171841252 Kevin White, UChicago 3cd9be6ae668ab5af29fe03854126e64 https://www.encodeproject.org/files/ENCFF677KCA/@@download/ENCFF677KCA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF613GVP/, /files/ENCFF105GUP/ archived s3://encode-public/2016/10/25/310027ea-f565-4cbd-83a6-c123fc7a71ba/ENCFF677KCA.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF771MUX fastq fastq reads ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 107939374 Michael Snyder, Stanford a41f5f7ca4b4b45f3318d73a722d73e2 https://www.encodeproject.org/files/ENCFF771MUX/@@download/ENCFF771MUX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/9407de11-5efa-40ea-a1aa-7ea4bf08e193/ENCFF771MUX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF589XLT fastq fastq reads ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 102007800 Michael Snyder, Stanford f98044206dcf0d3d9fbe376a2c192698 https://www.encodeproject.org/files/ENCFF589XLT/@@download/ENCFF589XLT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/1c652429-e5f7-4ed4-847a-22e793cc77de/ENCFF589XLT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF403QGG bigWig bigWig signal of unique reads ce10 ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF038RDO/ 10039799 Kevin White, UChicago f09fbd01d615fe008512fb00be4e605c https://www.encodeproject.org/files/ENCFF403QGG/@@download/ENCFF403QGG.bigWig released s3://encode-public/2017/04/29/c9dac9bb-5f30-4d26-b98b-ba18f4bbb8c8/ENCFF403QGG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF363KWB bigWig bigWig read-depth normalized signal ce10 ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF038RDO/ 10047541 Kevin White, UChicago 6041cecf1adc4d94381de8764b8e24aa https://www.encodeproject.org/files/ENCFF363KWB/@@download/ENCFF363KWB.bigWig released s3://encode-public/2017/04/29/bb238125-ebb0-4f43-98ce-653c87f07b08/ENCFF363KWB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF038RDO bam bam alignments ce10 ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF589XLT/, /files/ENCFF771MUX/, /files/ENCFF987UMF/ 277706469 Kevin White, UChicago f1c414373ea01194cddba2281f08654e https://www.encodeproject.org/files/ENCFF038RDO/@@download/ENCFF038RDO.bam released s3://encode-public/2018/01/05/eaf28d0d-3ab3-4396-82c7-3a89bb94f0df/ENCFF038RDO.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF936TPG bam bam alignments ce11 ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF589XLT/, /files/ENCFF771MUX/, /files/ENCFF586MOL/ 278011170 Kevin White, UChicago 3c8991161fc9dde74f345d8d85bbd274 https://www.encodeproject.org/files/ENCFF936TPG/@@download/ENCFF936TPG.bam released s3://encode-public/2018/01/05/63c672bb-4eab-47d5-80e1-9e16cd08ed1c/ENCFF936TPG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF687MYZ bigWig bigWig signal of unique reads ce11 ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF936TPG/ 10039736 Kevin White, UChicago 5cd17533c6283a357f8023a77b06cf11 https://www.encodeproject.org/files/ENCFF687MYZ/@@download/ENCFF687MYZ.bigWig released s3://encode-public/2018/01/22/3435cab8-0d9e-4ace-a600-5378d7209144/ENCFF687MYZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF336YRF bigWig bigWig read-depth normalized signal ce11 ENCSR578VGI Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF936TPG/ 10046965 Kevin White, UChicago bd08cfb8678b82bb5ba627724adcae4f https://www.encodeproject.org/files/ENCFF336YRF/@@download/ENCFF336YRF.bigWig released s3://encode-public/2018/01/22/082bedd9-4f4b-4748-9b3c-455db8cd0fa3/ENCFF336YRF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF047YNV bam bam redacted alignments GRCh38 ENCSR642TGI Control ChIP-seq /human-donors/ENCDO874DHL/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF485KXO/, /files/ENCFF777LPA/, /files/ENCFF643CGH/, /files/ENCFF733LTO/, /files/ENCFF190DIA/ 639278718 ENCODE Processing Pipeline bc0d73af373b895f0b1e80e67d58a65b https://www.encodeproject.org/files/ENCFF047YNV/@@download/ENCFF047YNV.bam released s3://encode-public/2018/01/18/f340b1dc-c03d-4e03-92a6-9080250cc1f7/ENCFF047YNV.bam ENCODE3 GRCh38 archived low read length ENCFF150GJJ bam bam redacted unfiltered alignments GRCh38 ENCSR642TGI Control ChIP-seq /human-donors/ENCDO874DHL/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF485KXO/, /files/ENCFF777LPA/, /files/ENCFF643CGH/, /files/ENCFF733LTO/, /files/ENCFF190DIA/ 914344102 ENCODE Processing Pipeline 2b0821f4441adcaf1f756e21d710a747 https://www.encodeproject.org/files/ENCFF150GJJ/@@download/ENCFF150GJJ.bam released s3://encode-public/2018/01/18/4e559fe4-e598-48a4-83be-fb7d4cb9268b/ENCFF150GJJ.bam ENCODE3 GRCh38 archived low read length ENCFF479YTR bam bam redacted unfiltered alignments hg19 ENCSR642TGI Control ChIP-seq /human-donors/ENCDO874DHL/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF485KXO/, /files/ENCFF777LPA/, /files/ENCFF807MUK/, /files/ENCFF733LTO/, /files/ENCFF190DIA/ 905424612 ENCODE Processing Pipeline 5876842bc5561c83e0707a8fcf6457fe https://www.encodeproject.org/files/ENCFF479YTR/@@download/ENCFF479YTR.bam released s3://encode-public/2018/01/19/dc2b2995-a8c8-4b71-8101-28bf93d6e303/ENCFF479YTR.bam ENCODE3 hg19 archived low read length ENCFF709FTB bam bam redacted alignments hg19 ENCSR642TGI Control ChIP-seq /human-donors/ENCDO874DHL/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF485KXO/, /files/ENCFF777LPA/, /files/ENCFF807MUK/, /files/ENCFF733LTO/, /files/ENCFF190DIA/ 639272897 ENCODE Processing Pipeline 99a744b708d51c3e59ee3f16afb619ce https://www.encodeproject.org/files/ENCFF709FTB/@@download/ENCFF709FTB.bam released s3://encode-public/2018/01/19/e0cf2efa-d55f-4888-a2c3-650fa1987a96/ENCFF709FTB.bam ENCODE3 hg19 archived low read length ENCFF745DVC bam bam redacted alignments GRCh38 ENCSR642TGI Control ChIP-seq /human-donors/ENCDO874DHL/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF190DIA/, /files/ENCFF777LPA/, /files/ENCFF733LTO/, /files/ENCFF110MCL/, /files/ENCFF485KXO/ 2032680098 ENCODE Processing Pipeline 15e3785c905496bc2c3b9f07e3ff927e https://www.encodeproject.org/files/ENCFF745DVC/@@download/ENCFF745DVC.bam released s3://encode-public/2021/01/27/e933d696-6b58-4fe3-a757-6e1d5f8791de/ENCFF745DVC.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF597PZE tagAlign tagAlign alignments hg19 ENCSR642LNB Control ChIP-seq /human-donors/ENCDO858AJQ/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF857GIV/, /files/ENCFF315XZF/, /files/ENCFF915YSH/, /files/ENCFF363GJA/ 361177571 Anshul Kundaje, Stanford 6d1fbb198c3165ec410c25d4565e69cf https://www.encodeproject.org/files/ENCFF597PZE/@@download/ENCFF597PZE.tagAlign.gz archived s3://encode-public/2016/03/30/61e358bd-dc2f-44b7-a549-52d41bc85ffd/ENCFF597PZE.tagAlign.gz Lab custom hg19 archived low read length ENCFF638VYN bam bam redacted unfiltered alignments GRCh38 ENCSR642LNB Control ChIP-seq /human-donors/ENCDO858AJQ/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF363GJA/, /files/ENCFF643CGH/, /files/ENCFF315XZF/, /files/ENCFF857GIV/, /files/ENCFF915YSH/ 1189081930 ENCODE Processing Pipeline 15f653307b491aa4b2e3293030f2691a https://www.encodeproject.org/files/ENCFF638VYN/@@download/ENCFF638VYN.bam released s3://encode-public/2018/01/18/a0f330a9-942d-4215-b2ce-7fd958b8a6e9/ENCFF638VYN.bam ENCODE3 GRCh38 archived low read length ENCFF652IAB bam bam redacted alignments GRCh38 ENCSR642LNB Control ChIP-seq /human-donors/ENCDO858AJQ/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF363GJA/, /files/ENCFF643CGH/, /files/ENCFF315XZF/, /files/ENCFF857GIV/, /files/ENCFF915YSH/ 699431128 ENCODE Processing Pipeline 4dd7dd0293eeea7e25fc3235d5885510 https://www.encodeproject.org/files/ENCFF652IAB/@@download/ENCFF652IAB.bam released s3://encode-public/2018/01/18/654172c2-3f6a-48b3-a733-fa1f9c39cdb0/ENCFF652IAB.bam ENCODE3 GRCh38 archived low read length ENCFF920HJU bam bam redacted unfiltered alignments hg19 ENCSR642LNB Control ChIP-seq /human-donors/ENCDO858AJQ/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF363GJA/, /files/ENCFF807MUK/, /files/ENCFF315XZF/, /files/ENCFF857GIV/, /files/ENCFF915YSH/ 1174174676 ENCODE Processing Pipeline 9c5a1812a6c7048d28b464cddaf5c30d https://www.encodeproject.org/files/ENCFF920HJU/@@download/ENCFF920HJU.bam released s3://encode-public/2018/01/19/5049df9c-c109-4185-8f20-92828c69623e/ENCFF920HJU.bam ENCODE3 hg19 archived low read length ENCFF018DPA bam bam redacted alignments hg19 ENCSR642LNB Control ChIP-seq /human-donors/ENCDO858AJQ/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF363GJA/, /files/ENCFF807MUK/, /files/ENCFF315XZF/, /files/ENCFF857GIV/, /files/ENCFF915YSH/ 699245478 ENCODE Processing Pipeline 4ca377d628aaf835fd29fff73442b362 https://www.encodeproject.org/files/ENCFF018DPA/@@download/ENCFF018DPA.bam released s3://encode-public/2018/01/19/13cbbe52-4407-4d7c-8579-2a9bdc6324dd/ENCFF018DPA.bam ENCODE3 hg19 archived low read length ENCFF151UAQ bam bam redacted alignments GRCh38 ENCSR642LNB Control ChIP-seq /human-donors/ENCDO858AJQ/ UBERON:0012488 muscle layer of duodenum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF110MCL/, /files/ENCFF915YSH/, /files/ENCFF363GJA/, /files/ENCFF315XZF/, /files/ENCFF857GIV/ 2139646740 ENCODE Processing Pipeline f0df470346658670df410fd407d48cff https://www.encodeproject.org/files/ENCFF151UAQ/@@download/ENCFF151UAQ.bam released s3://encode-public/2021/01/27/b7763e6c-f6e7-44c7-97a1-646d854a3f6f/ENCFF151UAQ.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF089EYX fastq fastq reads ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 single-ended 1179974884 Xiang-Dong Fu, UCSD 6be322e6d36799ddf3d2635265e2d2bc SRA:SRR6213397 https://www.encodeproject.org/files/ENCFF089EYX/@@download/ENCFF089EYX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/9b2815ae-e742-4d7e-b3da-986a3c7bc1cb/ENCFF089EYX.fastq.gz low read length ENCFF419XJY fastq fastq reads ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 single-ended 1268454425 Xiang-Dong Fu, UCSD 6d714dad747f92c28e018999c61bc927 SRA:SRR6213396 https://www.encodeproject.org/files/ENCFF419XJY/@@download/ENCFF419XJY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/44183bcc-e5f4-4497-8f2b-7351b37e2794/ENCFF419XJY.fastq.gz low read length ENCFF242EIX bam bam unfiltered alignments hg19 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF089EYX/ 1681141518 ENCODE Processing Pipeline f0d22e6674c98b190fc5cf56f724aa68 https://www.encodeproject.org/files/ENCFF242EIX/@@download/ENCFF242EIX.bam released s3://encode-public/2017/02/08/61202997-6e51-4368-a665-5d1cb2e0318e/ENCFF242EIX.bam ENCODE3 hg19 archived low read length ENCFF788DBU bam bam unfiltered alignments hg19 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF419XJY/, /files/ENCFF807MUK/ 1799151816 ENCODE Processing Pipeline 158a9c90afe6f4b4168f9dcb458b21f2 https://www.encodeproject.org/files/ENCFF788DBU/@@download/ENCFF788DBU.bam released s3://encode-public/2017/02/08/1c9a24fd-722a-495f-9262-662650d4a56d/ENCFF788DBU.bam ENCODE3 hg19 archived low read length ENCFF037EWV bam bam unfiltered alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF419XJY/, /files/ENCFF643CGH/ 1808361167 ENCODE Processing Pipeline b35d70615e650ca97b9df9bbc7213718 https://www.encodeproject.org/files/ENCFF037EWV/@@download/ENCFF037EWV.bam released s3://encode-public/2017/02/08/ad45b9ea-85e6-43fb-a718-19f4ffdeb36d/ENCFF037EWV.bam ENCODE3 GRCh38 archived low read length ENCFF897DGW bam bam unfiltered alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF089EYX/ 1689626117 ENCODE Processing Pipeline 98a61db8cf89c1c6e36760d4300aa9b4 https://www.encodeproject.org/files/ENCFF897DGW/@@download/ENCFF897DGW.bam released s3://encode-public/2017/02/08/d9e38d5b-adef-4376-816d-52a49b06b2df/ENCFF897DGW.bam ENCODE3 GRCh38 archived low read length ENCFF321CYT bam bam alignments hg19 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF419XJY/, /files/ENCFF807MUK/ 1356678383 ENCODE Processing Pipeline c8a949df57744aa79dd76c7c767bd7fd https://www.encodeproject.org/files/ENCFF321CYT/@@download/ENCFF321CYT.bam released s3://encode-public/2017/02/08/874f199a-3e6d-4d96-9a9a-2ce91ea22b7d/ENCFF321CYT.bam ENCODE3 hg19 archived low read length ENCFF661ZRO bam bam alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF089EYX/ 1267945867 ENCODE Processing Pipeline 44f07af940a61c2238807218e0fb950d https://www.encodeproject.org/files/ENCFF661ZRO/@@download/ENCFF661ZRO.bam released s3://encode-public/2017/02/08/71084b0c-9ef3-496a-8e19-4657c6f1591c/ENCFF661ZRO.bam ENCODE3 GRCh38 archived low read length ENCFF872FDX bam bam alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF419XJY/, /files/ENCFF643CGH/ 1355635511 ENCODE Processing Pipeline 7a2a7f7a8e18d7df05c6ffa0e2283909 https://www.encodeproject.org/files/ENCFF872FDX/@@download/ENCFF872FDX.bam released s3://encode-public/2017/02/08/b9e2c011-e510-4952-b330-83d2d61d12d5/ENCFF872FDX.bam ENCODE3 GRCh38 archived low read length ENCFF456BYT bam bam alignments hg19 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF089EYX/ 1268939482 ENCODE Processing Pipeline 939d552eb9e8f8b5b9e6f1ddbc94b12b https://www.encodeproject.org/files/ENCFF456BYT/@@download/ENCFF456BYT.bam released s3://encode-public/2017/02/08/3e1e637f-dec8-4935-bafd-2cd2cadadc64/ENCFF456BYT.bam ENCODE3 hg19 archived low read length ENCFF284ULS bam bam unfiltered alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF419XJY/ 1784253407 ENCODE Processing Pipeline d40ab4c20495e0ce6a1ab3fad3863d98 https://www.encodeproject.org/files/ENCFF284ULS/@@download/ENCFF284ULS.bam released s3://encode-public/2020/10/27/a098188b-8c6b-4fed-9dc6-1dbfbf9b4768/ENCFF284ULS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF561BNH bam bam unfiltered alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF089EYX/, /files/ENCFF110MCL/ 1665729668 ENCODE Processing Pipeline bfa43f26f07532190b7d57cc0525b8fd https://www.encodeproject.org/files/ENCFF561BNH/@@download/ENCFF561BNH.bam released s3://encode-public/2020/10/27/1ee29af0-8f34-4666-8a9b-ad2bc7b8d88d/ENCFF561BNH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF321KCO bam bam alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF089EYX/, /files/ENCFF110MCL/ 1309867606 ENCODE Processing Pipeline 98ab28b741e05a08a4dfaf328c4e5d3c https://www.encodeproject.org/files/ENCFF321KCO/@@download/ENCFF321KCO.bam released s3://encode-public/2020/10/27/13faee24-0ce4-4147-943d-c777c70cab94/ENCFF321KCO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF729KBJ bam bam alignments GRCh38 ENCSR436OZQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF419XJY/ 1396967960 ENCODE Processing Pipeline 6a804c4ff9c365de11d51ac0ec763b3f https://www.encodeproject.org/files/ENCFF729KBJ/@@download/ENCFF729KBJ.bam released s3://encode-public/2020/10/27/7d0b63b7-fce9-4d4b-8d9d-400227ae1035/ENCFF729KBJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF050WFT fastq fastq reads ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 146212278 Michael Snyder, Stanford deb771c59eeaf2ec38e5e184a158fa98 https://www.encodeproject.org/files/ENCFF050WFT/@@download/ENCFF050WFT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/122af293-6310-43c4-a7b7-28eefe4c5897/ENCFF050WFT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF514JXH fastq fastq reads ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 173478773 Michael Snyder, Stanford 6ed4a0aa2a5d9da8c8f4f548068ab15e https://www.encodeproject.org/files/ENCFF514JXH/@@download/ENCFF514JXH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/622fbd89-f584-4925-9cc8-7c65e0c2905b/ENCFF514JXH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF239WOQ bam bam alignments ce10 ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF987UMF/, /files/ENCFF050WFT/, /files/ENCFF514JXH/ 405806392 Kevin White, UChicago edf92d7e747ef89ba84d1c1cd88f0638 https://www.encodeproject.org/files/ENCFF239WOQ/@@download/ENCFF239WOQ.bam released s3://encode-public/2017/04/27/68ba7c7e-f3bd-41af-83a1-16d365636bef/ENCFF239WOQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF343OID bam bam alignments ce11 ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF586MOL/, /files/ENCFF050WFT/, /files/ENCFF514JXH/ 406219628 Kevin White, UChicago cfed52e194bac252764c219cbd7b9223 https://www.encodeproject.org/files/ENCFF343OID/@@download/ENCFF343OID.bam released s3://encode-public/2017/04/27/05164bb2-7c7e-46a0-800b-6311b147a08a/ENCFF343OID.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF112DEH bigWig bigWig read-depth normalized signal ce10 ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF239WOQ/ 9991327 Kevin White, UChicago 320c6e7970c480a19574c0fd9e27405d https://www.encodeproject.org/files/ENCFF112DEH/@@download/ENCFF112DEH.bigWig released s3://encode-public/2017/04/29/fc256228-d2db-46bf-87e1-2c33f7275cd1/ENCFF112DEH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF607FXQ bigWig bigWig signal of unique reads ce10 ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF239WOQ/ 10039692 Kevin White, UChicago 26f5c17665250a2cd7f693077d727856 https://www.encodeproject.org/files/ENCFF607FXQ/@@download/ENCFF607FXQ.bigWig released s3://encode-public/2017/04/29/b34562cd-1d9b-41db-a405-ddcde2242f26/ENCFF607FXQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF349YLK bigWig bigWig read-depth normalized signal ce11 ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF343OID/ 9991217 Kevin White, UChicago 900471133790ef1e8e6ccae98d1a51d8 https://www.encodeproject.org/files/ENCFF349YLK/@@download/ENCFF349YLK.bigWig released s3://encode-public/2017/04/29/99bc42ca-fd47-410e-b209-74d94acd37b0/ENCFF349YLK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF216YSA bigWig bigWig signal of unique reads ce11 ENCSR073PON Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF343OID/ 10039238 Kevin White, UChicago de9647b55bc6988150a5b807ac1b407d https://www.encodeproject.org/files/ENCFF216YSA/@@download/ENCFF216YSA.bigWig released s3://encode-public/2017/11/19/09a200a6-e470-47e7-930c-85a3382a9efc/ENCFF216YSA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF865OAR fastq fastq reads ENCSR702WFF Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000137 osteocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 604125113 Bradley Bernstein, Broad cf5075cd0d8ff90b63cc8eef0c025cb9 SRA:SRR14102942 https://www.encodeproject.org/files/ENCFF865OAR/@@download/ENCFF865OAR.fastq.gz 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s3://encode-public/2020/05/01/92993dd4-ecb4-4154-91fe-48ef9809eeb6/ENCFF578DJE.fastq.gz ENCFF493QZR fastq fastq reads ENCSR702WFF Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000137 osteocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 354714029 Bradley Bernstein, Broad b0d2501581496a36c83134da5d35f994 SRA:SRR14102948 https://www.encodeproject.org/files/ENCFF493QZR/@@download/ENCFF493QZR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ffd8a3f4-f899-4aa8-8d66-bc61bd0f8b03/ENCFF493QZR.fastq.gz ENCFF601CXB fastq fastq reads ENCSR702WFF Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000137 osteocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 416460300 Bradley Bernstein, Broad d0a9d9f2a901e17f21be7194fc35688c SRA:SRR14102938 https://www.encodeproject.org/files/ENCFF601CXB/@@download/ENCFF601CXB.fastq.gz Illumina NextSeq 500 released 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/human-donors/ENCDO222AAA/ CL:0000137 osteocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF578DJE/, /files/ENCFF865OAR/, /files/ENCFF601CXB/, /files/ENCFF441PFQ/, /files/ENCFF596CZG/, /files/ENCFF110MCL/, /files/ENCFF412ROM/, /files/ENCFF736AFS/, /files/ENCFF603IED/ 3327382492 ENCODE Processing Pipeline 9b549828564a60c68d67ac1417c13632 https://www.encodeproject.org/files/ENCFF410NIJ/@@download/ENCFF410NIJ.bam released s3://encode-public/2020/06/14/e21096af-542d-452d-88ee-02c24aeaadc1/ENCFF410NIJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF684RWC bam bam alignments GRCh38 ENCSR702WFF Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000137 osteocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF660DSZ/, /files/ENCFF964LJV/, /files/ENCFF110MCL/, /files/ENCFF334XXP/, /files/ENCFF037BKA/, /files/ENCFF112THJ/, /files/ENCFF493QZR/, /files/ENCFF510IKT/, /files/ENCFF766HAO/ 2443107613 ENCODE Processing Pipeline 11614c96f49cb8d421fc39dbad1100ee https://www.encodeproject.org/files/ENCFF684RWC/@@download/ENCFF684RWC.bam released s3://encode-public/2020/06/14/d504cce4-b4c8-43dc-9357-b109792db7b4/ENCFF684RWC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF640BNA fastq fastq reads ENCSR851OQN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/64864/'], '@type': ['Target', 'Item'], 'name': 'RFX7-human', 'label': 'RFX7', '@id': '/targets/RFX7-human/', 'title': 'RFX7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '202dcd27-8752-4e20-8e67-f32ae5bd91f3', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF170LCV/ 2348994863 Michael Snyder, Stanford ed83ca15f06366107cc4b894288ad6ad SRA:SRR14847748 https://www.encodeproject.org/files/ENCFF640BNA/@@download/ENCFF640BNA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/03/d304ed95-007f-4be9-a2ca-96cdb5d6d66c/ENCFF640BNA.fastq.gz mild to moderate bottlenecking ENCFF170LCV fastq fastq reads ENCSR851OQN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/64864/'], '@type': ['Target', 'Item'], 'name': 'RFX7-human', 'label': 'RFX7', '@id': '/targets/RFX7-human/', 'title': 'RFX7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '202dcd27-8752-4e20-8e67-f32ae5bd91f3', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF640BNA/ 2685811056 Michael Snyder, Stanford 91f4c0d2e81ec6198d5d4771b27b6f1c SRA:SRR14847748 https://www.encodeproject.org/files/ENCFF170LCV/@@download/ENCFF170LCV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/03/3e62df28-95f5-437e-b10c-a3048d563966/ENCFF170LCV.fastq.gz mild to moderate bottlenecking ENCFF199HES bam bam unfiltered alignments GRCh38 ENCSR851OQN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/64864/'], '@type': ['Target', 'Item'], 'name': 'RFX7-human', 'label': 'RFX7', '@id': '/targets/RFX7-human/', 'title': 'RFX7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '202dcd27-8752-4e20-8e67-f32ae5bd91f3', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF640BNA/, /files/ENCFF170LCV/ 5040816322 ENCODE Processing Pipeline dad98d43a67a81de7372826f633573b4 https://www.encodeproject.org/files/ENCFF199HES/@@download/ENCFF199HES.bam released s3://encode-public/2020/04/21/1e1049ea-6a26-426c-9b4c-db0711368f0d/ENCFF199HES.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF468KVD bam bam alignments GRCh38 ENCSR851OQN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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{'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 127076844 Michael Snyder, Stanford 90cc5ee59276c504d3b19e5cb774975b https://www.encodeproject.org/files/ENCFF647FEY/@@download/ENCFF647FEY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/894f49a3-7872-4f26-a7fd-725ac384348e/ENCFF647FEY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF355JPY fastq fastq reads ENCSR583FIC Control ChIP-seq /worm-donors/ENCDO894KGN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 98576493 Michael Snyder, Stanford cc5a92a85134fff3e57e617f7143b532 https://www.encodeproject.org/files/ENCFF355JPY/@@download/ENCFF355JPY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/248e3e1f-ceb9-4346-9beb-da6c11f4e669/ENCFF355JPY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF233YLR bam bam alignments ce10 ENCSR583FIC Control ChIP-seq /worm-donors/ENCDO894KGN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF647FEY/, /files/ENCFF355JPY/, /files/ENCFF987UMF/ 299767503 Kevin White, UChicago 8bfbb787d810bf1062b988b0772a110f https://www.encodeproject.org/files/ENCFF233YLR/@@download/ENCFF233YLR.bam released s3://encode-public/2017/04/27/fc50ba52-8273-4025-837d-202ec6021117/ENCFF233YLR.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF083TYT bam bam alignments ce11 ENCSR583FIC Control ChIP-seq /worm-donors/ENCDO894KGN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF647FEY/, /files/ENCFF355JPY/, /files/ENCFF586MOL/ 300076614 Kevin White, UChicago 31232501d0d2d9e0988fe67a8b63cad4 https://www.encodeproject.org/files/ENCFF083TYT/@@download/ENCFF083TYT.bam released s3://encode-public/2017/04/27/336dcade-748f-4c7c-9e86-87f9a0bf3efd/ENCFF083TYT.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF314IDG bigWig bigWig read-depth normalized signal ce10 ENCSR583FIC Control ChIP-seq /worm-donors/ENCDO894KGN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF233YLR/ 10021977 Kevin White, UChicago 2eeb7b3b970cd0077ceecded82fede3e https://www.encodeproject.org/files/ENCFF314IDG/@@download/ENCFF314IDG.bigWig released s3://encode-public/2017/04/29/536e4651-4161-44fe-b713-ec7fc2b48da5/ENCFF314IDG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF702KNG bigWig bigWig signal of unique reads ce10 ENCSR583FIC Control ChIP-seq /worm-donors/ENCDO894KGN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF233YLR/ 10060590 Kevin White, UChicago fcff4f0ff769318295d968b31286f5bf https://www.encodeproject.org/files/ENCFF702KNG/@@download/ENCFF702KNG.bigWig released s3://encode-public/2017/04/29/e1a7e437-d5e7-4772-9c9c-a61b4f09757f/ENCFF702KNG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF028TZR bigWig bigWig read-depth normalized signal ce11 ENCSR583FIC Control ChIP-seq /worm-donors/ENCDO894KGN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF083TYT/ 10032638 Kevin White, UChicago 317ae4e7dda8dfbfeae8fa55c2b29721 https://www.encodeproject.org/files/ENCFF028TZR/@@download/ENCFF028TZR.bigWig released s3://encode-public/2017/04/29/ee8c3d4e-57d1-4e95-99fb-a0f1ffa0f71e/ENCFF028TZR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF756XRU bigWig bigWig signal of unique reads ce11 ENCSR583FIC Control ChIP-seq /worm-donors/ENCDO894KGN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191731/'], '@type': ['Target', 'Item'], 'name': 'nhr-84-celegans', 'label': 'nhr-84', '@id': '/targets/nhr-84-celegans/', 'title': 'nhr-84 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f0a1f7f7-c967-42a4-b754-caa789cbdb0e', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF083TYT/ 10057812 Kevin White, UChicago 04d3091b757932e11616b91295f87867 https://www.encodeproject.org/files/ENCFF756XRU/@@download/ENCFF756XRU.bigWig released s3://encode-public/2017/04/29/a63c5c9d-478c-46cd-a4f7-5e21b0713963/ENCFF756XRU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF420UMA fastq fastq reads ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF640BFJ/ 3005999492 Michael Snyder, Stanford 30565aa46a5a1636754ad7903cbd8359 SRA:SRR6213719 https://www.encodeproject.org/files/ENCFF420UMA/@@download/ENCFF420UMA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/05/03/51d7e7c4-9ba5-47c1-ab9e-0a18e2254bdd/ENCFF420UMA.fastq.gz ENCFF640BFJ fastq fastq reads ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF420UMA/ 2536306838 Michael Snyder, Stanford 3beda664febfe1ecda0268c0a95a39b8 SRA:SRR6213719 https://www.encodeproject.org/files/ENCFF640BFJ/@@download/ENCFF640BFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/05/03/876c596a-f512-4543-8143-d2ab6de80a3d/ENCFF640BFJ.fastq.gz ENCFF759NQV bam bam alignments hg19 ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF420UMA/, /files/ENCFF640BFJ/ 4290556457 ENCODE Processing Pipeline cc3991965a4509a5db53b45adc12cbc7 https://www.encodeproject.org/files/ENCFF759NQV/@@download/ENCFF759NQV.bam released s3://encode-public/2017/05/05/253209bf-bd46-494e-b989-3e3f5333cfbf/ENCFF759NQV.bam ENCODE3 hg19 archived ENCFF167NYP bam bam unfiltered alignments hg19 ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF420UMA/, /files/ENCFF640BFJ/ 5500127672 ENCODE Processing Pipeline 1ee213c7db73e548c5111ddc6a5a2f74 https://www.encodeproject.org/files/ENCFF167NYP/@@download/ENCFF167NYP.bam released s3://encode-public/2017/05/05/4e5247f3-32b8-44d5-a7eb-866603425c21/ENCFF167NYP.bam ENCODE3 hg19 archived ENCFF839JJA bam bam unfiltered alignments GRCh38 ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 101 /files/ENCFF420UMA/, /files/ENCFF640BFJ/, /files/ENCFF643CGH/ 5507453132 ENCODE Processing Pipeline 9d64d3cb8ae6e0740ce0090bfd9a18d2 https://www.encodeproject.org/files/ENCFF839JJA/@@download/ENCFF839JJA.bam released s3://encode-public/2017/05/16/0c282bc2-d409-4063-bcb1-8b9d235c06d1/ENCFF839JJA.bam ENCODE3 GRCh38 archived ENCFF401WSJ bam bam alignments GRCh38 ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 101 /files/ENCFF420UMA/, /files/ENCFF640BFJ/, /files/ENCFF643CGH/ 4297314815 ENCODE Processing Pipeline 60228fdd54e99cca0be07dd5f8f2c54a https://www.encodeproject.org/files/ENCFF401WSJ/@@download/ENCFF401WSJ.bam released s3://encode-public/2017/05/16/36d0778c-1442-41a2-9152-6f18caa04882/ENCFF401WSJ.bam ENCODE3 GRCh38 archived ENCFF425EHU bam bam unfiltered alignments GRCh38 ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF640BFJ/, /files/ENCFF420UMA/ 5499779748 ENCODE Processing Pipeline 949cccd737e5a45570d1fdc2ea33a17c https://www.encodeproject.org/files/ENCFF425EHU/@@download/ENCFF425EHU.bam released s3://encode-public/2020/06/02/4b784097-d51c-4c50-8baf-818fdcf63842/ENCFF425EHU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF908NZZ bam bam alignments GRCh38 ENCSR483GTS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-05-17 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF640BFJ/, /files/ENCFF420UMA/ 4234293757 ENCODE Processing Pipeline 33078804ab3d6a5a14a0fbbac6e1eaf9 https://www.encodeproject.org/files/ENCFF908NZZ/@@download/ENCFF908NZZ.bam released s3://encode-public/2020/06/02/73e57877-f485-4fe0-9dab-29deb668dc61/ENCFF908NZZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF186FIL fastq fastq reads ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF176XPN/ 2798600610 Michael Snyder, Stanford 383a5061a7e08963471b16fc21d8068e SRA:SRR6213104 https://www.encodeproject.org/files/ENCFF186FIL/@@download/ENCFF186FIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/51c8ad26-0b09-4384-8c13-909d66fa8230/ENCFF186FIL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF176XPN fastq fastq reads ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF186FIL/ 3363071885 Michael Snyder, Stanford 1b77b0525808adff64862e8f2a3e40cc SRA:SRR6213104 https://www.encodeproject.org/files/ENCFF176XPN/@@download/ENCFF176XPN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/34a65ae9-ac81-4ef2-9bee-6ba7958dd8b0/ENCFF176XPN.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF194SNA bam bam unfiltered alignments hg19 ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF186FIL/, /files/ENCFF176XPN/ 5669560841 ENCODE Processing Pipeline 8c0f691023e44e9f16352b92ccac4978 https://www.encodeproject.org/files/ENCFF194SNA/@@download/ENCFF194SNA.bam released s3://encode-public/2016/12/10/af8d31d7-0afc-4888-97a0-5e0334129626/ENCFF194SNA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF734BLH bam bam alignments hg19 ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF186FIL/, /files/ENCFF176XPN/ 4072066564 ENCODE Processing Pipeline c5ece087c87f352d983313d61f611afd https://www.encodeproject.org/files/ENCFF734BLH/@@download/ENCFF734BLH.bam released s3://encode-public/2016/12/10/641b205e-1dc9-4c2a-9557-3ff903faa201/ENCFF734BLH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF689DJZ bam bam unfiltered alignments GRCh38 ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF186FIL/, /files/ENCFF176XPN/ 5675838539 ENCODE Processing Pipeline 60f4d58c40703b79e3876481ec220947 https://www.encodeproject.org/files/ENCFF689DJZ/@@download/ENCFF689DJZ.bam released s3://encode-public/2016/12/10/1365db2d-cabd-4001-ade2-3efd10695676/ENCFF689DJZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF302FDA bam bam alignments GRCh38 ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF186FIL/, /files/ENCFF176XPN/ 4079017994 ENCODE Processing Pipeline 7a65a95fb3c3bf0adedf2305980dd076 https://www.encodeproject.org/files/ENCFF302FDA/@@download/ENCFF302FDA.bam released s3://encode-public/2016/12/10/e84c91a9-520b-4f6a-96e1-c8101d5b9c56/ENCFF302FDA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF458OAR bam bam unfiltered alignments GRCh38 ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF186FIL/, /files/ENCFF176XPN/ 5677353090 ENCODE Processing Pipeline 3fe9993d7748f5aa89f4e5b4e6f7510e https://www.encodeproject.org/files/ENCFF458OAR/@@download/ENCFF458OAR.bam released s3://encode-public/2020/06/03/d2ef1766-794d-415c-825e-2f7a1f240a9d/ENCFF458OAR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF060PDY bam bam alignments GRCh38 ENCSR311TCB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF186FIL/, /files/ENCFF176XPN/ 4016421532 ENCODE Processing Pipeline ccb02cdeb30bb5eb03e78d343e812805 https://www.encodeproject.org/files/ENCFF060PDY/@@download/ENCFF060PDY.bam released s3://encode-public/2020/06/03/ad431bf9-8071-4354-ad93-b9dc30561b1e/ENCFF060PDY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF456XMK tagAlign tagAlign alignments hg19 ENCSR926WRA Control ChIP-seq CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 174795949 Anshul Kundaje, Stanford 9697703e1da2915225bafab8519828ba https://www.encodeproject.org/files/ENCFF456XMK/@@download/ENCFF456XMK.tagAlign.gz archived s3://encode-public/2016/03/30/6199745b-ca54-47e0-b7a1-a124b2dd0740/ENCFF456XMK.tagAlign.gz Lab custom hg19 released ENCFF101YQV fastq fastq reads ENCSR941GEM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1895'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2494/'], '@type': ['Target', 'Item'], 'name': 'NR5A2-human', 'label': 'NR5A2', '@id': '/targets/NR5A2-human/', 'title': 'NR5A2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '543d7aa8-dc0f-4414-8653-eeabb3ad194e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF658SXW/ 2105114705 Michael Snyder, Stanford 1598643a43ffab5490b48407686821d2 SRA:SRR14107088 https://www.encodeproject.org/files/ENCFF101YQV/@@download/ENCFF101YQV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/e777a13b-dfc6-4fba-8ab0-91f9a9eff8ab/ENCFF101YQV.fastq.gz mild to moderate bottlenecking ENCFF658SXW fastq fastq reads ENCSR941GEM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1895'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2494/'], '@type': ['Target', 'Item'], 'name': 'NR5A2-human', 'label': 'NR5A2', '@id': '/targets/NR5A2-human/', 'title': 'NR5A2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '543d7aa8-dc0f-4414-8653-eeabb3ad194e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF101YQV/ 1853635706 Michael Snyder, Stanford e57760e02f6949ce88102722cd44f95a SRA:SRR14107088 https://www.encodeproject.org/files/ENCFF658SXW/@@download/ENCFF658SXW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/cf1b2149-719d-424a-9218-6a79b8e412eb/ENCFF658SXW.fastq.gz mild to moderate bottlenecking ENCFF671MQN bam bam unfiltered alignments GRCh38 ENCSR941GEM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1895'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2494/'], '@type': ['Target', 'Item'], 'name': 'NR5A2-human', 'label': 'NR5A2', '@id': '/targets/NR5A2-human/', 'title': 'NR5A2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '543d7aa8-dc0f-4414-8653-eeabb3ad194e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF658SXW/, /files/ENCFF101YQV/ 3908296243 ENCODE Processing Pipeline f764c9806b2baf5219a40510f27d9261 https://www.encodeproject.org/files/ENCFF671MQN/@@download/ENCFF671MQN.bam released s3://encode-public/2020/04/20/d2c5a75b-259a-4eef-b619-e76313a3a9ae/ENCFF671MQN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF782LUW bam bam alignments GRCh38 ENCSR941GEM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1895'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2494/'], '@type': ['Target', 'Item'], 'name': 'NR5A2-human', 'label': 'NR5A2', '@id': '/targets/NR5A2-human/', 'title': 'NR5A2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '543d7aa8-dc0f-4414-8653-eeabb3ad194e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF658SXW/, /files/ENCFF101YQV/ 3035476003 ENCODE Processing Pipeline ba9a3b1f3069e9fe25b84a0163df1359 https://www.encodeproject.org/files/ENCFF782LUW/@@download/ENCFF782LUW.bam released s3://encode-public/2020/04/20/4b053d9b-0c02-489f-95e7-ea4c04d6d4be/ENCFF782LUW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF747TQH fastq fastq reads ENCSR520BTD Control ChIP-seq /fly-donors/ENCDO134CTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35262/'], '@type': ['Target', 'Item'], 'name': 'CG10631-dmelanogaster', 'label': 'CG10631', '@id': '/targets/CG10631-dmelanogaster/', 'title': 'CG10631 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f62b793f-ae2d-4c68-b068-e53c58881b34', 'status': 'released'} dm3 2L 19737164 19757812 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 278063535 Kevin White, UChicago c5719f32403ee2f99b1281b19b2fc19f https://www.encodeproject.org/files/ENCFF747TQH/@@download/ENCFF747TQH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/21/c14ccea5-1ad0-44fd-853a-98c03b16ff8d/ENCFF747TQH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF926KWX bam bam alignments dm3 ENCSR520BTD Control ChIP-seq /fly-donors/ENCDO134CTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35262/'], '@type': ['Target', 'Item'], 'name': 'CG10631-dmelanogaster', 'label': 'CG10631', '@id': '/targets/CG10631-dmelanogaster/', 'title': 'CG10631 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f62b793f-ae2d-4c68-b068-e53c58881b34', 'status': 'released'} dm3 2L 19737164 19757812 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF747TQH/ 334052147 Kevin White, UChicago 7985cb268ac6ca68b170c0d2a6c586f0 https://www.encodeproject.org/files/ENCFF926KWX/@@download/ENCFF926KWX.bam released s3://encode-public/2015/10/21/e5d90251-d53d-40cb-9f23-e1add2d82837/ENCFF926KWX.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF867JFT bigWig bigWig signal of unique reads dm3 ENCSR520BTD Control ChIP-seq /fly-donors/ENCDO134CTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35262/'], '@type': ['Target', 'Item'], 'name': 'CG10631-dmelanogaster', 'label': 'CG10631', '@id': '/targets/CG10631-dmelanogaster/', 'title': 'CG10631 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f62b793f-ae2d-4c68-b068-e53c58881b34', 'status': 'released'} dm3 2L 19737164 19757812 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF926KWX/ 15035648 Kevin White, UChicago 9c4b44fba80a22f79e78729cc11f5fc1 https://www.encodeproject.org/files/ENCFF867JFT/@@download/ENCFF867JFT.bigWig released s3://encode-public/2015/10/21/c0f37dc8-01f9-4fd5-b862-c1e478e6b14f/ENCFF867JFT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF360EIT bigWig bigWig read-depth normalized signal dm3 ENCSR520BTD Control ChIP-seq /fly-donors/ENCDO134CTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35262/'], '@type': ['Target', 'Item'], 'name': 'CG10631-dmelanogaster', 'label': 'CG10631', '@id': '/targets/CG10631-dmelanogaster/', 'title': 'CG10631 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f62b793f-ae2d-4c68-b068-e53c58881b34', 'status': 'released'} dm3 2L 19737164 19757812 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF926KWX/ 15046532 Kevin White, UChicago 4213ef77b091bc2e95578e5b2d0e5831 https://www.encodeproject.org/files/ENCFF360EIT/@@download/ENCFF360EIT.bigWig released s3://encode-public/2015/10/21/9e83e4b3-d865-45de-b0df-244407dcb5fd/ENCFF360EIT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF463YER bam bam alignments dm6 ENCSR520BTD Control ChIP-seq /fly-donors/ENCDO134CTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35262/'], '@type': ['Target', 'Item'], 'name': 'CG10631-dmelanogaster', 'label': 'CG10631', '@id': '/targets/CG10631-dmelanogaster/', 'title': 'CG10631 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f62b793f-ae2d-4c68-b068-e53c58881b34', 'status': 'released'} dm3 2L 19737164 19757812 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF747TQH/ 331506520 Kevin White, UChicago 831b78d9166532d0b1fe95fc93da931e https://www.encodeproject.org/files/ENCFF463YER/@@download/ENCFF463YER.bam released s3://encode-public/2016/04/20/3f14fbde-5c6d-4144-8fb9-de329f3303a5/ENCFF463YER.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF716RHJ bigWig bigWig read-depth normalized signal dm6 ENCSR520BTD Control ChIP-seq /fly-donors/ENCDO134CTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35262/'], '@type': ['Target', 'Item'], 'name': 'CG10631-dmelanogaster', 'label': 'CG10631', '@id': '/targets/CG10631-dmelanogaster/', 'title': 'CG10631 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f62b793f-ae2d-4c68-b068-e53c58881b34', 'status': 'released'} dm3 2L 19737164 19757812 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF463YER/ 17087105 Kevin White, UChicago 1a6073311fc10d4b57352e84543f6a29 https://www.encodeproject.org/files/ENCFF716RHJ/@@download/ENCFF716RHJ.bigWig released s3://encode-public/2016/06/20/995c8ce9-083b-4eca-9c78-d40951b285f6/ENCFF716RHJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF929SPM bigWig bigWig signal of unique reads dm6 ENCSR520BTD Control ChIP-seq /fly-donors/ENCDO134CTS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35262/'], '@type': ['Target', 'Item'], 'name': 'CG10631-dmelanogaster', 'label': 'CG10631', '@id': '/targets/CG10631-dmelanogaster/', 'title': 'CG10631 (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f62b793f-ae2d-4c68-b068-e53c58881b34', 'status': 'released'} dm3 2L 19737164 19757812 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF463YER/ 17071370 Kevin White, UChicago d5e848b4cacda9301c08485b9b63643e https://www.encodeproject.org/files/ENCFF929SPM/@@download/ENCFF929SPM.bigWig released s3://encode-public/2016/06/20/35d69716-e15a-48fe-b586-0cb3e485c2b2/ENCFF929SPM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF273RPG tagAlign tagAlign alignments hg19 ENCSR864MFX Control ChIP-seq CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 408730802 Anshul Kundaje, Stanford a4bc8870cb474268091080889884f921 https://www.encodeproject.org/files/ENCFF273RPG/@@download/ENCFF273RPG.tagAlign.gz archived s3://encode-public/2016/05/02/a95e86b3-d7dd-4756-abba-ff6fc84c4e7c/ENCFF273RPG.tagAlign.gz Lab custom hg19 released ENCFF768JTI fastq fastq reads ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF725WQM/ 2516662240 Michael Snyder, Stanford ecbae1a6eeab75768cb285d1e64d28a1 SRA:SRR6212904 https://www.encodeproject.org/files/ENCFF768JTI/@@download/ENCFF768JTI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/13/5949bce8-9b8c-4832-9cf0-466a4d65a6ba/ENCFF768JTI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF725WQM fastq fastq reads ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF768JTI/ 2240410523 Michael Snyder, Stanford e0373da17ee910fb12205461225112f7 SRA:SRR6212904 https://www.encodeproject.org/files/ENCFF725WQM/@@download/ENCFF725WQM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/13/d36061f7-aaa2-4311-9f96-85c6275e959a/ENCFF725WQM.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF676RXD bam bam unfiltered alignments GRCh38 ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF768JTI/, /files/ENCFF725WQM/ 4672120674 ENCODE Processing Pipeline d1e6740aa6007d79c13315685f622453 https://www.encodeproject.org/files/ENCFF676RXD/@@download/ENCFF676RXD.bam released s3://encode-public/2016/12/15/3626e323-bfcd-448e-a0c3-f4380f8e60f6/ENCFF676RXD.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF652CFB bam bam alignments GRCh38 ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF768JTI/, /files/ENCFF725WQM/ 4017198535 ENCODE Processing Pipeline 73dda847c8bd220941ac1410ac678055 https://www.encodeproject.org/files/ENCFF652CFB/@@download/ENCFF652CFB.bam released s3://encode-public/2016/12/15/eae88108-dc1e-4bf8-b5ca-ac36d8ec6387/ENCFF652CFB.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF591PYL bam bam alignments hg19 ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF768JTI/, /files/ENCFF725WQM/ 4013679712 ENCODE Processing Pipeline 51f9ad02f21f318892aad70715307d0c https://www.encodeproject.org/files/ENCFF591PYL/@@download/ENCFF591PYL.bam released s3://encode-public/2016/12/15/716d535b-c5d8-4d12-9ac9-58f80dcb4fba/ENCFF591PYL.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF605DQY bam bam unfiltered alignments hg19 ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF768JTI/, /files/ENCFF725WQM/ 4663831814 ENCODE Processing Pipeline f07d340bdf855135a355c4d96540b52e https://www.encodeproject.org/files/ENCFF605DQY/@@download/ENCFF605DQY.bam released s3://encode-public/2016/12/15/6b8afddd-c4a3-4546-8e26-068105abc2b5/ENCFF605DQY.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF973OPX bam bam alignments GRCh38 ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF725WQM/, /files/ENCFF768JTI/ 3892323551 ENCODE Processing Pipeline 6290e200fdf1cdaa7c1e58d7bdf19ae8 https://www.encodeproject.org/files/ENCFF973OPX/@@download/ENCFF973OPX.bam released s3://encode-public/2020/06/03/64a1cef4-d081-4bd2-93b4-bf0418345693/ENCFF973OPX.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF082HVE bam bam unfiltered alignments GRCh38 ENCSR176UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': '/targets/NR2C1-human/', 'status': 'released'} DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF725WQM/, /files/ENCFF768JTI/ 4663210298 ENCODE Processing Pipeline b9994daaab01fa1233db255ee087acf2 https://www.encodeproject.org/files/ENCFF082HVE/@@download/ENCFF082HVE.bam released s3://encode-public/2020/06/03/0622b847-9fcc-4c93-a4dc-e306bcbd916a/ENCFF082HVE.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF149QAX fastq fastq reads ENCSR934KWG Control ChIP-seq /worm-donors/ENCDO239YNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565071/'], '@type': ['Target', 'Item'], 'name': 'ceh-90-celegans', 'label': 'ceh-90', '@id': '/targets/ceh-90-celegans/', 'title': 'ceh-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '741d8ce7-31ec-42f0-942f-8723e5fbb9fa', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 480607304 Kevin White, UChicago 3480fe4f1d1c9ce13bcfe9e649e19278 https://www.encodeproject.org/files/ENCFF149QAX/@@download/ENCFF149QAX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/78888c80-0bcf-4a13-a47d-16efc4be10ed/ENCFF149QAX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF527GXM bam bam alignments ce10 ENCSR934KWG Control ChIP-seq /worm-donors/ENCDO239YNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565071/'], '@type': ['Target', 'Item'], 'name': 'ceh-90-celegans', 'label': 'ceh-90', '@id': '/targets/ceh-90-celegans/', 'title': 'ceh-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '741d8ce7-31ec-42f0-942f-8723e5fbb9fa', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF149QAX/ 493343397 Kevin White, UChicago 4519c21338bcea1706fd83feea02c890 https://www.encodeproject.org/files/ENCFF527GXM/@@download/ENCFF527GXM.bam released s3://encode-public/2015/08/19/29d60c80-9aa9-46db-84d8-4b235e5f3a72/ENCFF527GXM.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF060DMZ bigWig bigWig read-depth normalized signal ce10 ENCSR934KWG Control ChIP-seq /worm-donors/ENCDO239YNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565071/'], '@type': ['Target', 'Item'], 'name': 'ceh-90-celegans', 'label': 'ceh-90', '@id': '/targets/ceh-90-celegans/', 'title': 'ceh-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '741d8ce7-31ec-42f0-942f-8723e5fbb9fa', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF527GXM/ 10010029 Kevin White, UChicago 0fc071db85eb251497bc3b36e624ce27 https://www.encodeproject.org/files/ENCFF060DMZ/@@download/ENCFF060DMZ.bigWig released s3://encode-public/2015/10/02/875f3614-4ce6-4e7d-b3d7-50ec3f7f73e5/ENCFF060DMZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF601CTX bigWig bigWig signal of unique reads ce10 ENCSR934KWG Control ChIP-seq /worm-donors/ENCDO239YNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565071/'], '@type': ['Target', 'Item'], 'name': 'ceh-90-celegans', 'label': 'ceh-90', '@id': '/targets/ceh-90-celegans/', 'title': 'ceh-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '741d8ce7-31ec-42f0-942f-8723e5fbb9fa', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF527GXM/ 9979257 Kevin White, UChicago 6c092af84d791f4755f3259af924d740 https://www.encodeproject.org/files/ENCFF601CTX/@@download/ENCFF601CTX.bigWig released s3://encode-public/2015/10/02/b9b1fb0e-7165-49d1-afd5-c948a2192f9b/ENCFF601CTX.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF005TOD bam bam alignments ce11 ENCSR934KWG Control ChIP-seq /worm-donors/ENCDO239YNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565071/'], '@type': ['Target', 'Item'], 'name': 'ceh-90-celegans', 'label': 'ceh-90', '@id': '/targets/ceh-90-celegans/', 'title': 'ceh-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '741d8ce7-31ec-42f0-942f-8723e5fbb9fa', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF149QAX/ 493721696 Kevin White, UChicago 555e24f9ab00c6cf4f4a3a9082e9cf04 https://www.encodeproject.org/files/ENCFF005TOD/@@download/ENCFF005TOD.bam released s3://encode-public/2016/01/16/705eb34d-77f8-4163-98f8-fe4ec81538d7/ENCFF005TOD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF128TEJ bigWig bigWig signal of unique reads ce11 ENCSR934KWG Control ChIP-seq /worm-donors/ENCDO239YNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565071/'], '@type': ['Target', 'Item'], 'name': 'ceh-90-celegans', 'label': 'ceh-90', '@id': '/targets/ceh-90-celegans/', 'title': 'ceh-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '741d8ce7-31ec-42f0-942f-8723e5fbb9fa', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF005TOD/ 9975906 Kevin White, UChicago 56550d90e8096f9bdb7bf37707cc6cb9 https://www.encodeproject.org/files/ENCFF128TEJ/@@download/ENCFF128TEJ.bigWig released s3://encode-public/2016/02/03/9f34a281-02d0-41e9-a245-5cef6338dcfd/ENCFF128TEJ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF674XCW bigWig bigWig read-depth normalized signal ce11 ENCSR934KWG Control ChIP-seq /worm-donors/ENCDO239YNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565071/'], '@type': ['Target', 'Item'], 'name': 'ceh-90-celegans', 'label': 'ceh-90', '@id': '/targets/ceh-90-celegans/', 'title': 'ceh-90 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '741d8ce7-31ec-42f0-942f-8723e5fbb9fa', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF005TOD/ 10001503 Kevin White, UChicago ffa31d16a325b868542812fb13e82527 https://www.encodeproject.org/files/ENCFF674XCW/@@download/ENCFF674XCW.bigWig released s3://encode-public/2016/02/03/11f89fc6-3da6-4370-8733-f2e12f5eb697/ENCFF674XCW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF712GUT bigWig bigWig read-depth normalized signal dm3 ENCSR040UNE Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF923PND/ 15399417 Kevin White, UChicago b8f0eca9a678e64974897ca09fcbe082 https://www.encodeproject.org/files/ENCFF712GUT/@@download/ENCFF712GUT.bigWig released s3://encode-public/2017/01/06/2326e29d-3f38-46f5-971e-087c86b035ec/ENCFF712GUT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF458PMI fastq fastq reads ENCSR040UNE Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 941001820 Kevin White, UChicago 825d6244f67a698dd3539e139c14ba86 https://www.encodeproject.org/files/ENCFF458PMI/@@download/ENCFF458PMI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/20/3eb3e640-b247-46bb-bffb-ed3839b97de5/ENCFF458PMI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF895TYW bam bam alignments dm6 ENCSR040UNE Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF458PMI/, /files/ENCFF479RCH/ 1146497177 Kevin White, UChicago 4fd985571df02cda22a498bb245e6852 https://www.encodeproject.org/files/ENCFF895TYW/@@download/ENCFF895TYW.bam released s3://encode-public/2016/12/22/4bf7780c-f1e7-405f-a5b2-be2e0e95f1b8/ENCFF895TYW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF229WFX bigWig bigWig signal of unique reads dm3 ENCSR040UNE Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF923PND/ 15377908 Kevin White, UChicago c8441c01574a592cd20c59cee798b189 https://www.encodeproject.org/files/ENCFF229WFX/@@download/ENCFF229WFX.bigWig released s3://encode-public/2017/01/06/d274ca5b-6b95-4716-8d97-aea6807fff3f/ENCFF229WFX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF281SPO bigWig bigWig signal of unique reads dm6 ENCSR040UNE Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF895TYW/ 17436930 Kevin White, UChicago cdd98b197cee3b0fc00317c40abe2df8 https://www.encodeproject.org/files/ENCFF281SPO/@@download/ENCFF281SPO.bigWig released s3://encode-public/2017/01/06/2cb80329-33a7-46ed-9cd5-f325272f48af/ENCFF281SPO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF878JCE bigWig bigWig read-depth normalized signal dm6 ENCSR040UNE Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF895TYW/ 17463610 Kevin White, UChicago 9d4bd2fbf27cac0d4d7c3b31d1390270 https://www.encodeproject.org/files/ENCFF878JCE/@@download/ENCFF878JCE.bigWig released s3://encode-public/2017/01/06/ca163ea0-6762-4d5d-bb57-c189f59e32e1/ENCFF878JCE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF923PND bam bam alignments dm3 ENCSR040UNE Control ChIP-seq /fly-donors/ENCDO893VYW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34956/'], '@type': ['Target', 'Item'], 'name': 'crp-dmelanogaster', 'label': 'crp', '@id': '/targets/crp-dmelanogaster/', 'title': 'crp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14b7f879-7cbd-4a04-b5bb-8658dac39a84', 'status': 'released'} dm3 2L 16189189 16291323 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF458PMI/, /files/ENCFF059UHX/ 1153268364 Kevin White, UChicago e23f3aecc8abd55df5244644f1cacb2f https://www.encodeproject.org/files/ENCFF923PND/@@download/ENCFF923PND.bam released s3://encode-public/2016/12/22/7fc3f99e-b493-418b-973f-4f84c77ff2e3/ENCFF923PND.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF701PZS bigWig bigWig read-depth normalized signal dm6 ENCSR544ESS Control ChIP-seq /fly-donors/ENCDO802SKU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36424/'], '@type': ['Target', 'Item'], 'name': 'sug-dmelanogaster', 'label': 'sug', '@id': '/targets/sug-dmelanogaster/', 'title': 'sug (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e59f6c1-40b8-4b84-99fa-0046b6aeb000', 'status': 'released'} dm3 2R 8809172 8829605 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF141VSO/ 17801581 Kevin White, UChicago e7fd0bb7d10e2b59fc16d3c0314132be https://www.encodeproject.org/files/ENCFF701PZS/@@download/ENCFF701PZS.bigWig released s3://encode-public/2019/06/18/b741ab07-83e2-4eb5-90f7-ffd6057b9f2d/ENCFF701PZS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF837BHW fastq fastq reads ENCSR544ESS Control ChIP-seq /fly-donors/ENCDO802SKU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36424/'], '@type': ['Target', 'Item'], 'name': 'sug-dmelanogaster', 'label': 'sug', '@id': '/targets/sug-dmelanogaster/', 'title': 'sug (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e59f6c1-40b8-4b84-99fa-0046b6aeb000', 'status': 'released'} dm3 2R 8809172 8829605 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1176311987 Kevin White, UChicago 826115f9950f73b5ea748c632ef354e0 https://www.encodeproject.org/files/ENCFF837BHW/@@download/ENCFF837BHW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/a1100be7-0ed2-4728-b4ce-9d362f35be1d/ENCFF837BHW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF141VSO bam bam alignments dm6 ENCSR544ESS Control ChIP-seq /fly-donors/ENCDO802SKU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36424/'], '@type': ['Target', 'Item'], 'name': 'sug-dmelanogaster', 'label': 'sug', '@id': '/targets/sug-dmelanogaster/', 'title': 'sug (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e59f6c1-40b8-4b84-99fa-0046b6aeb000', 'status': 'released'} dm3 2R 8809172 8829605 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF837BHW/, /files/ENCFF479RCH/ 1593685247 Kevin White, UChicago e517f188eb9f2efd0dd6257e81fbe5cc https://www.encodeproject.org/files/ENCFF141VSO/@@download/ENCFF141VSO.bam released s3://encode-public/2019/06/18/7b9c23c7-c9b6-4503-9ed0-0f1933c0ded3/ENCFF141VSO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF177TQP bigWig bigWig signal of unique reads dm6 ENCSR544ESS Control ChIP-seq /fly-donors/ENCDO802SKU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36424/'], '@type': ['Target', 'Item'], 'name': 'sug-dmelanogaster', 'label': 'sug', '@id': '/targets/sug-dmelanogaster/', 'title': 'sug (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e59f6c1-40b8-4b84-99fa-0046b6aeb000', 'status': 'released'} dm3 2R 8809172 8829605 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF141VSO/ 17884074 Kevin White, UChicago 74940ccd7497144a03ee13855a63a7d5 https://www.encodeproject.org/files/ENCFF177TQP/@@download/ENCFF177TQP.bigWig released s3://encode-public/2019/06/18/93062e5d-eee7-42d8-a050-5b7510c44083/ENCFF177TQP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF761CZF fastq fastq reads ENCSR785TKF Control ChIP-seq /fly-donors/ENCDO340PKI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41363/'], '@type': ['Target', 'Item'], 'name': 'pros-dmelanogaster', 'label': 'pros', '@id': '/targets/pros-dmelanogaster/', 'title': 'pros (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '24e7633b-9667-4772-a297-59219cfd939f', 'status': 'released'} dm3 3R 7138858 7245382 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1084613903 Kevin White, UChicago 162181bb924876d92d0057abf38e8f5e https://www.encodeproject.org/files/ENCFF761CZF/@@download/ENCFF761CZF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/ddbfe43a-2332-47b4-ba62-39ff7eb5b60a/ENCFF761CZF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF093ZDK bam bam alignments dm6 ENCSR785TKF Control ChIP-seq /fly-donors/ENCDO340PKI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41363/'], '@type': ['Target', 'Item'], 'name': 'pros-dmelanogaster', 'label': 'pros', '@id': '/targets/pros-dmelanogaster/', 'title': 'pros (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '24e7633b-9667-4772-a297-59219cfd939f', 'status': 'released'} dm3 3R 7138858 7245382 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF761CZF/, /files/ENCFF479RCH/ 1446351141 Kevin White, UChicago ba8a985a0491339ba080439cf2781993 https://www.encodeproject.org/files/ENCFF093ZDK/@@download/ENCFF093ZDK.bam released s3://encode-public/2019/04/13/a0bf2460-32b4-46d2-a82c-f43fb73222b4/ENCFF093ZDK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF553JQW bigWig bigWig signal of unique reads dm6 ENCSR785TKF Control ChIP-seq /fly-donors/ENCDO340PKI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41363/'], '@type': ['Target', 'Item'], 'name': 'pros-dmelanogaster', 'label': 'pros', '@id': '/targets/pros-dmelanogaster/', 'title': 'pros (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '24e7633b-9667-4772-a297-59219cfd939f', 'status': 'released'} dm3 3R 7138858 7245382 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093ZDK/ 17689477 Kevin White, UChicago 49f1805bfbb48d3d57455c140fbf0239 https://www.encodeproject.org/files/ENCFF553JQW/@@download/ENCFF553JQW.bigWig released s3://encode-public/2019/04/16/cccc2c63-d94b-413f-88df-8363d702a149/ENCFF553JQW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF515AJB bigWig bigWig read-depth normalized signal dm6 ENCSR785TKF Control ChIP-seq /fly-donors/ENCDO340PKI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41363/'], '@type': ['Target', 'Item'], 'name': 'pros-dmelanogaster', 'label': 'pros', '@id': '/targets/pros-dmelanogaster/', 'title': 'pros (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '24e7633b-9667-4772-a297-59219cfd939f', 'status': 'released'} dm3 3R 7138858 7245382 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093ZDK/ 17722742 Kevin White, UChicago 5b42414cf4f3dd078f2c31a4295d38cc https://www.encodeproject.org/files/ENCFF515AJB/@@download/ENCFF515AJB.bigWig released s3://encode-public/2019/04/16/3218414f-1739-4a7a-afe0-435a98afe6f8/ENCFF515AJB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF561JAR fastq fastq reads ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF174XNW/ 2726191336 Michael Snyder, Stanford 0aae59a406e7a8b34401208954cd7209 SRA:SRR6214334 https://www.encodeproject.org/files/ENCFF561JAR/@@download/ENCFF561JAR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/c882a206-0819-474f-bdfe-a79875cd5d99/ENCFF561JAR.fastq.gz ENCFF174XNW fastq fastq reads ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF561JAR/ 3166942477 Michael Snyder, Stanford 3af7c203b8c017b092a14c85a5bf528f SRA:SRR6214334 https://www.encodeproject.org/files/ENCFF174XNW/@@download/ENCFF174XNW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/4863929c-f64b-4337-8b39-1bfb8d5c4618/ENCFF174XNW.fastq.gz ENCFF913AEL bam bam unfiltered alignments hg19 ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF561JAR/, /files/ENCFF807MUK/, /files/ENCFF174XNW/ 5806026661 ENCODE Processing Pipeline 6b5f65f49698ccb1b44bdb48bba7e131 https://www.encodeproject.org/files/ENCFF913AEL/@@download/ENCFF913AEL.bam released s3://encode-public/2016/12/07/3fe5564e-c916-4da0-9efb-4262d73c801f/ENCFF913AEL.bam ENCODE3 hg19 archived ENCFF044AZM bam bam unfiltered alignments GRCh38 ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF561JAR/, /files/ENCFF174XNW/, /files/ENCFF643CGH/ 5818401423 ENCODE Processing Pipeline 27535ae7c4798e34210b6697ba49a85e https://www.encodeproject.org/files/ENCFF044AZM/@@download/ENCFF044AZM.bam released s3://encode-public/2016/12/07/8a50c6db-e7d2-489b-bc57-d12ba0b95e22/ENCFF044AZM.bam ENCODE3 GRCh38 archived ENCFF804BRR bam bam alignments GRCh38 ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF561JAR/, /files/ENCFF174XNW/, /files/ENCFF643CGH/ 4716306260 ENCODE Processing Pipeline 07ceb986713f32de0277bbf1ca4cd037 https://www.encodeproject.org/files/ENCFF804BRR/@@download/ENCFF804BRR.bam released s3://encode-public/2016/12/07/bf22d631-5f6b-4f90-b446-16267c79f2ce/ENCFF804BRR.bam ENCODE3 GRCh38 archived ENCFF900VZW bam bam alignments hg19 ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF561JAR/, /files/ENCFF807MUK/, /files/ENCFF174XNW/ 4709030080 ENCODE Processing Pipeline f7ecec4cc04fa944c6319e81ad56857e https://www.encodeproject.org/files/ENCFF900VZW/@@download/ENCFF900VZW.bam released s3://encode-public/2016/12/07/4a483f2d-e290-4660-b2e2-4c2882998412/ENCFF900VZW.bam ENCODE3 hg19 archived ENCFF913EYU bam bam alignments GRCh38 ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF561JAR/, /files/ENCFF174XNW/ 4663972665 ENCODE Processing Pipeline e8291f5b10bd829978f7c29a5a69cc4d https://www.encodeproject.org/files/ENCFF913EYU/@@download/ENCFF913EYU.bam released s3://encode-public/2020/06/02/ef3d5cfa-77f7-4d43-a515-ba6a3b05afcb/ENCFF913EYU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF973PFR bam bam unfiltered alignments GRCh38 ENCSR999DEZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF561JAR/, /files/ENCFF174XNW/ 5828866063 ENCODE Processing Pipeline 4dc613ffd6bcfa78b572a5d624ff5011 https://www.encodeproject.org/files/ENCFF973PFR/@@download/ENCFF973PFR.bam released s3://encode-public/2020/06/02/07828d84-e594-4d00-a5d4-0371971beb3a/ENCFF973PFR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF836QBV tagAlign tagAlign alignments hg19 ENCSR802ZTF Control ChIP-seq /human-donors/ENCDO889KES/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF627LYX/ 229892197 Anshul Kundaje, Stanford c05e0f5d5ad4a4856b0fe09b8498f0f0 https://www.encodeproject.org/files/ENCFF836QBV/@@download/ENCFF836QBV.tagAlign.gz archived s3://encode-public/2016/03/30/71753a83-dbf0-4a59-acef-5720d568ca14/ENCFF836QBV.tagAlign.gz Lab custom hg19 archived low read length ENCFF404BCD tagAlign tagAlign alignments hg19 ENCSR802ZTF Control ChIP-seq UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 204529655 Anshul Kundaje, Stanford 470027d9156df16e2e04128fcc74132f https://www.encodeproject.org/files/ENCFF404BCD/@@download/ENCFF404BCD.tagAlign.gz archived s3://encode-public/2016/02/11/fa63f6f3-09f1-4578-a531-33ce386831cc/ENCFF404BCD.tagAlign.gz Lab custom hg19 archived low read length ENCFF399FXT bam bam redacted unfiltered alignments GRCh38 ENCSR802ZTF Control ChIP-seq /human-donors/ENCDO889KES/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF627LYX/, /files/ENCFF643CGH/ 647069842 ENCODE Processing Pipeline 9f3637ddb9c908a34d2b6e61e3747e22 https://www.encodeproject.org/files/ENCFF399FXT/@@download/ENCFF399FXT.bam released s3://encode-public/2018/01/18/517bd350-aea1-430e-98ca-83b04ce5fda3/ENCFF399FXT.bam ENCODE3 GRCh38 archived low read length ENCFF578SRP bam bam redacted alignments GRCh38 ENCSR802ZTF Control ChIP-seq /human-donors/ENCDO889KES/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF627LYX/, /files/ENCFF643CGH/ 457754711 ENCODE Processing Pipeline 22abd1ee5160de6b99dd979839c544de https://www.encodeproject.org/files/ENCFF578SRP/@@download/ENCFF578SRP.bam released s3://encode-public/2018/01/18/49bebcab-c466-4981-b0e2-df49708b229b/ENCFF578SRP.bam ENCODE3 GRCh38 archived low read length ENCFF532YYZ bam bam redacted unfiltered alignments hg19 ENCSR802ZTF Control ChIP-seq /human-donors/ENCDO889KES/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF627LYX/, /files/ENCFF807MUK/ 640711071 ENCODE Processing Pipeline 186a8f11608acd4c36e82ac3c5fabee0 https://www.encodeproject.org/files/ENCFF532YYZ/@@download/ENCFF532YYZ.bam released s3://encode-public/2018/01/19/3674febc-0096-40ab-adc7-e88f6312f50b/ENCFF532YYZ.bam ENCODE3 hg19 archived low read length ENCFF008BGE bam bam redacted alignments hg19 ENCSR802ZTF Control ChIP-seq /human-donors/ENCDO889KES/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF627LYX/, /files/ENCFF807MUK/ 457836970 ENCODE Processing Pipeline 53e122ca6019d9d453011fcf278333a5 https://www.encodeproject.org/files/ENCFF008BGE/@@download/ENCFF008BGE.bam released s3://encode-public/2018/01/19/e1540ac2-60db-4cd6-83ab-dc8896b27f80/ENCFF008BGE.bam ENCODE3 hg19 archived low read length ENCFF761PKB bam bam redacted alignments GRCh38 ENCSR802ZTF Control ChIP-seq /human-donors/ENCDO889KES/ UBERON:0000320 duodenal mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF627LYX/ 1465036494 ENCODE Processing Pipeline 460fede1634a274f3fcc2db50199e22a https://www.encodeproject.org/files/ENCFF761PKB/@@download/ENCFF761PKB.bam released s3://encode-public/2021/01/27/107d4806-ecad-49a1-91c8-cc408ee34345/ENCFF761PKB.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF150FTN fastq fastq reads ENCSR595LMX Control ChIP-seq /fly-donors/ENCDO683ANM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33975/'], '@type': ['Target', 'Item'], 'name': 'CG13775-dmelanogaster', 'label': 'CG13775', '@id': '/targets/CG13775-dmelanogaster/', 'title': 'CG13775 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eb7b8bf-efe0-4a16-804f-5ff61089283c', 'status': 'released'} dm3 2L 6937858 6960369 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 795219012 Kevin White, UChicago 1bff8dfe765abc21bd496463fa46ddfc https://www.encodeproject.org/files/ENCFF150FTN/@@download/ENCFF150FTN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/d7ae32f8-1c16-45c1-a426-c2e6ff37068e/ENCFF150FTN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF967QWP bam bam alignments dm3 ENCSR595LMX Control ChIP-seq /fly-donors/ENCDO683ANM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33975/'], '@type': ['Target', 'Item'], 'name': 'CG13775-dmelanogaster', 'label': 'CG13775', '@id': '/targets/CG13775-dmelanogaster/', 'title': 'CG13775 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eb7b8bf-efe0-4a16-804f-5ff61089283c', 'status': 'released'} dm3 2L 6937858 6960369 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF150FTN/, /files/ENCFF059UHX/ 1073312290 Kevin White, UChicago 0d27e75341b47c73af32d521b8e34cb6 https://www.encodeproject.org/files/ENCFF967QWP/@@download/ENCFF967QWP.bam released s3://encode-public/2016/12/21/648c3194-4a3b-4d7a-9a4c-5c4905c73005/ENCFF967QWP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF423MEY bam bam alignments dm6 ENCSR595LMX Control ChIP-seq /fly-donors/ENCDO683ANM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33975/'], '@type': ['Target', 'Item'], 'name': 'CG13775-dmelanogaster', 'label': 'CG13775', '@id': '/targets/CG13775-dmelanogaster/', 'title': 'CG13775 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eb7b8bf-efe0-4a16-804f-5ff61089283c', 'status': 'released'} dm3 2L 6937858 6960369 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF150FTN/, /files/ENCFF479RCH/ 1065513280 Kevin White, UChicago 6637d57843616514d39972c208155167 https://www.encodeproject.org/files/ENCFF423MEY/@@download/ENCFF423MEY.bam released s3://encode-public/2016/12/22/1e6c05a1-9a51-43a9-8abd-1b4ec06ba0dd/ENCFF423MEY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF424LXA bigWig bigWig read-depth normalized signal dm3 ENCSR595LMX Control ChIP-seq /fly-donors/ENCDO683ANM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33975/'], '@type': ['Target', 'Item'], 'name': 'CG13775-dmelanogaster', 'label': 'CG13775', '@id': '/targets/CG13775-dmelanogaster/', 'title': 'CG13775 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eb7b8bf-efe0-4a16-804f-5ff61089283c', 'status': 'released'} dm3 2L 6937858 6960369 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF967QWP/ 15444973 Kevin White, UChicago 88b34090719671c8f6219cee263c4a01 https://www.encodeproject.org/files/ENCFF424LXA/@@download/ENCFF424LXA.bigWig released s3://encode-public/2017/01/03/09e8811e-661b-46f9-8ea6-407755968865/ENCFF424LXA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF222OQX bigWig bigWig signal of unique reads dm3 ENCSR595LMX Control ChIP-seq /fly-donors/ENCDO683ANM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33975/'], '@type': ['Target', 'Item'], 'name': 'CG13775-dmelanogaster', 'label': 'CG13775', '@id': '/targets/CG13775-dmelanogaster/', 'title': 'CG13775 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eb7b8bf-efe0-4a16-804f-5ff61089283c', 'status': 'released'} dm3 2L 6937858 6960369 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF967QWP/ 15438644 Kevin White, UChicago 8153549f15e1c086338ae055ec4b6f8d https://www.encodeproject.org/files/ENCFF222OQX/@@download/ENCFF222OQX.bigWig released s3://encode-public/2017/01/03/410a1c4e-c437-43cd-a623-7c6550daacfe/ENCFF222OQX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF905PJM bigWig bigWig read-depth normalized signal dm6 ENCSR595LMX Control ChIP-seq /fly-donors/ENCDO683ANM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33975/'], '@type': ['Target', 'Item'], 'name': 'CG13775-dmelanogaster', 'label': 'CG13775', '@id': '/targets/CG13775-dmelanogaster/', 'title': 'CG13775 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eb7b8bf-efe0-4a16-804f-5ff61089283c', 'status': 'released'} dm3 2L 6937858 6960369 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF423MEY/ 17507209 Kevin White, UChicago 17022c0261427c608776bee1c50b92f0 https://www.encodeproject.org/files/ENCFF905PJM/@@download/ENCFF905PJM.bigWig released s3://encode-public/2017/01/03/70f42dc7-2937-41ff-a8e4-f837e9d2c179/ENCFF905PJM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF400ZUF bigWig bigWig signal of unique reads dm6 ENCSR595LMX Control ChIP-seq /fly-donors/ENCDO683ANM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33975/'], '@type': ['Target', 'Item'], 'name': 'CG13775-dmelanogaster', 'label': 'CG13775', '@id': '/targets/CG13775-dmelanogaster/', 'title': 'CG13775 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eb7b8bf-efe0-4a16-804f-5ff61089283c', 'status': 'released'} dm3 2L 6937858 6960369 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF423MEY/ 17487741 Kevin White, UChicago a0995dcf45437de122ca5792dc8c2de8 https://www.encodeproject.org/files/ENCFF400ZUF/@@download/ENCFF400ZUF.bigWig released s3://encode-public/2017/01/03/9af124c2-cc05-4fa5-9163-29b28f91298b/ENCFF400ZUF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF647MVX bam bam alignments ce10 ENCSR107LHB Control ChIP-seq /worm-donors/ENCDO209UBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF926BXY/ 320594957 Kevin White, UChicago e732afb42169983e31a164aa5555ce44 https://www.encodeproject.org/files/ENCFF647MVX/@@download/ENCFF647MVX.bam released s3://encode-public/2015/08/19/a3a7afa8-3f37-4190-a85b-1c6ccdcaae17/ENCFF647MVX.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF926BXY fastq fastq reads ENCSR107LHB Control ChIP-seq /worm-donors/ENCDO209UBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 280038168 Kevin White, UChicago ef70328e0e82840215b51c3f0fccc130 https://www.encodeproject.org/files/ENCFF926BXY/@@download/ENCFF926BXY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/08/24/1eb31494-a722-438f-b3dc-cc4d0f891f6f/ENCFF926BXY.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF061ZGX bigWig bigWig read-depth normalized signal ce10 ENCSR107LHB Control ChIP-seq /worm-donors/ENCDO209UBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF647MVX/ 10038939 Kevin White, UChicago 71c3601e2a38829c2afe7398dc5b3488 https://www.encodeproject.org/files/ENCFF061ZGX/@@download/ENCFF061ZGX.bigWig released s3://encode-public/2015/10/16/1328b439-b896-4341-a99f-ac8a090e7746/ENCFF061ZGX.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF514RMW bigWig bigWig signal of unique reads ce10 ENCSR107LHB Control ChIP-seq /worm-donors/ENCDO209UBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF647MVX/ 10010420 Kevin White, UChicago 0bf667d44017e63e70cb994b43864ba6 https://www.encodeproject.org/files/ENCFF514RMW/@@download/ENCFF514RMW.bigWig released s3://encode-public/2015/10/16/77e71839-5e39-498f-8101-b4c0823fcbc4/ENCFF514RMW.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF126VLT bam bam alignments ce11 ENCSR107LHB Control ChIP-seq /worm-donors/ENCDO209UBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF926BXY/ 320846747 Kevin White, UChicago f121850f8f608f6cd6f96c3eebead401 https://www.encodeproject.org/files/ENCFF126VLT/@@download/ENCFF126VLT.bam released s3://encode-public/2016/01/20/eb9125b6-9633-474a-9c56-cfc6d444ec53/ENCFF126VLT.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF542WTU bigWig bigWig signal of unique reads ce11 ENCSR107LHB Control ChIP-seq /worm-donors/ENCDO209UBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF126VLT/ 10008781 Kevin White, UChicago 434ba6c035d647d67c05b8a0f9392ffa https://www.encodeproject.org/files/ENCFF542WTU/@@download/ENCFF542WTU.bigWig released s3://encode-public/2016/02/03/0a99d259-d0e2-42f9-8103-a7be4d36082f/ENCFF542WTU.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF005GTR bigWig bigWig read-depth normalized signal ce11 ENCSR107LHB Control ChIP-seq /worm-donors/ENCDO209UBN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF126VLT/ 10037172 Kevin White, UChicago 63d8a6eccd22542967156068cfebdcff https://www.encodeproject.org/files/ENCFF005GTR/@@download/ENCFF005GTR.bigWig released s3://encode-public/2016/02/03/a0a22f4c-65c2-4224-829d-e4f0bbe2ec14/ENCFF005GTR.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF344UNR tagAlign tagAlign alignments hg19 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF888IGC/, /files/ENCFF676GBI/, /files/ENCFF680XTL/ 150853827 Anshul Kundaje, Stanford 7e8b6924d0eecb211132bdf62eb6649e https://www.encodeproject.org/files/ENCFF344UNR/@@download/ENCFF344UNR.tagAlign.gz archived s3://encode-public/2016/03/30/fbedceea-bebf-4b9b-ae57-480fb17251f8/ENCFF344UNR.tagAlign.gz Lab custom hg19 archived low read length ENCFF893RRO tagAlign tagAlign alignments hg19 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF073PQA/, /files/ENCFF254RAJ/, /files/ENCFF294NFU/ 188982783 Anshul Kundaje, Stanford 9a05634f71e0eb25b50884b69899b1a2 https://www.encodeproject.org/files/ENCFF893RRO/@@download/ENCFF893RRO.tagAlign.gz archived s3://encode-public/2016/03/30/0e446c3e-c683-4fea-a151-b84b3855eec5/ENCFF893RRO.tagAlign.gz Lab custom hg19 archived low read length ENCFF844URI bam bam redacted alignments GRCh38 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF888IGC/, /files/ENCFF643CGH/, /files/ENCFF676GBI/, /files/ENCFF680XTL/ 315659157 ENCODE Processing Pipeline 56c1802a9eac30c06c117d16f69049e5 https://www.encodeproject.org/files/ENCFF844URI/@@download/ENCFF844URI.bam released s3://encode-public/2018/01/24/81e87541-2b4a-44ab-a02b-1d23a5ca1823/ENCFF844URI.bam ENCODE3 GRCh38 archived low read length ENCFF909QSZ bam bam redacted unfiltered alignments GRCh38 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF888IGC/, /files/ENCFF643CGH/, /files/ENCFF676GBI/, /files/ENCFF680XTL/ 454811941 ENCODE Processing Pipeline d880da4d1438df819e99ce79d43d97c0 https://www.encodeproject.org/files/ENCFF909QSZ/@@download/ENCFF909QSZ.bam released s3://encode-public/2018/01/24/2fc5c6d2-1bf1-4030-a40c-2a2069fcbc05/ENCFF909QSZ.bam ENCODE3 GRCh38 archived low read length ENCFF016FTH bam bam redacted unfiltered alignments GRCh38 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF294NFU/, /files/ENCFF643CGH/, /files/ENCFF073PQA/, /files/ENCFF254RAJ/ 564805981 ENCODE Processing Pipeline cbe4b42843e184d88c2d012f2e5be559 https://www.encodeproject.org/files/ENCFF016FTH/@@download/ENCFF016FTH.bam released s3://encode-public/2018/01/24/2c115a29-9d5a-42b9-a184-3944ff790543/ENCFF016FTH.bam ENCODE3 GRCh38 archived low read length ENCFF167QXX bam bam redacted alignments GRCh38 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF294NFU/, /files/ENCFF643CGH/, /files/ENCFF073PQA/, /files/ENCFF254RAJ/ 399045638 ENCODE Processing Pipeline 13d977c86844b5a2c0f2e48315c9d5a9 https://www.encodeproject.org/files/ENCFF167QXX/@@download/ENCFF167QXX.bam released s3://encode-public/2018/01/24/acadbd5c-1aae-48e6-83fd-67366936878f/ENCFF167QXX.bam ENCODE3 GRCh38 archived low read length ENCFF477RTS bam bam redacted unfiltered alignments hg19 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF294NFU/, /files/ENCFF807MUK/, /files/ENCFF073PQA/, /files/ENCFF254RAJ/ 558697824 ENCODE Processing Pipeline b915ddd0ba08afd833fd172629e29904 https://www.encodeproject.org/files/ENCFF477RTS/@@download/ENCFF477RTS.bam released s3://encode-public/2018/01/24/7f5e04fa-e00b-4b1d-8896-9b9773aa5f2e/ENCFF477RTS.bam ENCODE3 hg19 archived low read length ENCFF877AVJ bam bam redacted alignments hg19 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF294NFU/, /files/ENCFF807MUK/, /files/ENCFF073PQA/, /files/ENCFF254RAJ/ 399037376 ENCODE Processing Pipeline 8b83b9e2d5a4aa3c50b267c13f6f1569 https://www.encodeproject.org/files/ENCFF877AVJ/@@download/ENCFF877AVJ.bam released s3://encode-public/2018/01/24/78eff4f7-6bb3-45f6-8503-95116d5374a2/ENCFF877AVJ.bam ENCODE3 hg19 archived low read length ENCFF437CGW bam bam redacted alignments hg19 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF888IGC/, /files/ENCFF807MUK/, /files/ENCFF676GBI/, /files/ENCFF680XTL/ 315637722 ENCODE Processing Pipeline 8af18f5b3d08e3be6506a887b8a06932 https://www.encodeproject.org/files/ENCFF437CGW/@@download/ENCFF437CGW.bam released s3://encode-public/2018/01/24/99957e50-e9d4-42a6-a735-1c56226b81c5/ENCFF437CGW.bam ENCODE3 hg19 archived low read length ENCFF310CZM bam bam redacted unfiltered alignments hg19 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF888IGC/, /files/ENCFF807MUK/, /files/ENCFF676GBI/, /files/ENCFF680XTL/ 449635953 ENCODE Processing Pipeline e7596295954b7cd32213f763c7f1c427 https://www.encodeproject.org/files/ENCFF310CZM/@@download/ENCFF310CZM.bam released s3://encode-public/2018/01/24/c38325a9-d664-4be2-84ce-be0c588d3fd5/ENCFF310CZM.bam ENCODE3 hg19 archived low read length ENCFF125MNQ bam bam redacted alignments GRCh38 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF680XTL/, /files/ENCFF110MCL/, /files/ENCFF888IGC/, /files/ENCFF676GBI/ 946274952 ENCODE Processing Pipeline 3932b88ac146d8544ec79722fedb8ded https://www.encodeproject.org/files/ENCFF125MNQ/@@download/ENCFF125MNQ.bam released s3://encode-public/2021/01/28/174316f9-49b8-4ce6-8f5f-b73e23d2e7db/ENCFF125MNQ.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF768JVU bam bam redacted alignments GRCh38 ENCSR072QNY Control ChIP-seq /human-donors/ENCDO688UWB/ CL:0000625 CD8-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF254RAJ/, /files/ENCFF110MCL/, /files/ENCFF294NFU/, /files/ENCFF073PQA/ 1224285320 ENCODE Processing Pipeline fbf2e429598d14a96efdd4e0aba54194 https://www.encodeproject.org/files/ENCFF768JVU/@@download/ENCFF768JVU.bam released s3://encode-public/2021/01/28/79b8936c-0753-48f5-ad77-7407c0d308e1/ENCFF768JVU.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF678LYZ tagAlign tagAlign alignments hg19 ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF008NYP/, /files/ENCFF687JWK/ 136825235 Anshul Kundaje, Stanford 21cecd80bd998ea0e779c39259eb386d https://www.encodeproject.org/files/ENCFF678LYZ/@@download/ENCFF678LYZ.tagAlign.gz archived s3://encode-public/2016/05/02/f9e5b9d2-0383-4304-a773-e95965b3cf7e/ENCFF678LYZ.tagAlign.gz low read depth, low read length ENCFF008NYP fastq fastq reads ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 486321409 Zhiping Weng, UMass 45045f055e0c4fe0f61ce0a7d2893908 SRA:SRR1067398 https://www.encodeproject.org/files/ENCFF008NYP/@@download/ENCFF008NYP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/bb6c7502-5967-42cb-8895-c3bc1e6cc918/ENCFF008NYP.fastq.gz low read depth, low read length ENCFF687JWK fastq fastq reads ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 497304666 Zhiping Weng, UMass 1bfe2e64a824938e74cb3c5e3816d5ca SRA:SRR1067401 https://www.encodeproject.org/files/ENCFF687JWK/@@download/ENCFF687JWK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/668679d0-2613-4560-8d7e-3edfde2da6c3/ENCFF687JWK.fastq.gz low read depth, low read length ENCFF452OGH bam bam unfiltered alignments GRCh38 ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF687JWK/, /files/ENCFF643CGH/, /files/ENCFF008NYP/ 1150830898 ENCODE Processing Pipeline 66ceee51ab38d3137d7928c237f9a439 https://www.encodeproject.org/files/ENCFF452OGH/@@download/ENCFF452OGH.bam released s3://encode-public/2016/12/19/f063e7eb-2930-444d-b443-f4407ded3a10/ENCFF452OGH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF555QPV bam bam alignments GRCh38 ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF687JWK/, /files/ENCFF643CGH/, /files/ENCFF008NYP/ 854107090 ENCODE Processing Pipeline 82d1b3a2833392609a0366cada4fac64 https://www.encodeproject.org/files/ENCFF555QPV/@@download/ENCFF555QPV.bam released s3://encode-public/2016/12/19/0bf05683-62aa-4582-8099-d7c4a292e318/ENCFF555QPV.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF314YYH bam bam unfiltered alignments hg19 ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF687JWK/, /files/ENCFF807MUK/, /files/ENCFF008NYP/ 1144293118 ENCODE Processing Pipeline 1ddd163da1c9554a7c09f7d24bc912ed https://www.encodeproject.org/files/ENCFF314YYH/@@download/ENCFF314YYH.bam released s3://encode-public/2016/12/19/8aef7489-4c4c-48c4-9b87-da1ccab94bab/ENCFF314YYH.bam ENCODE3 hg19 archived low read depth, low read length ENCFF990QIK bam bam alignments hg19 ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF687JWK/, /files/ENCFF807MUK/, /files/ENCFF008NYP/ 854464007 ENCODE Processing Pipeline 5f86d91e0a70ebd5314808e789154bf7 https://www.encodeproject.org/files/ENCFF990QIK/@@download/ENCFF990QIK.bam released s3://encode-public/2016/12/19/e068390a-cc4e-486f-b5b8-ed70085189be/ENCFF990QIK.bam ENCODE3 hg19 archived low read depth, low read length ENCFF968HCM bam bam unfiltered alignments GRCh38 ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF110MCL/, /files/ENCFF008NYP/, /files/ENCFF687JWK/ 1128603136 ENCODE Processing Pipeline a09a3e3baed0d5e18990b70da7fa9fbd https://www.encodeproject.org/files/ENCFF968HCM/@@download/ENCFF968HCM.bam released s3://encode-public/2020/08/06/aa00b277-d7c4-42d2-9e50-2c550d316dc2/ENCFF968HCM.bam ENCODE4 GRCh38 released low read depth, low read length ENCFF569DGG bam bam alignments GRCh38 ENCSR724XIL Control ChIP-seq /human-donors/ENCDO058TGV/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF110MCL/, /files/ENCFF008NYP/, /files/ENCFF687JWK/ 930952552 ENCODE Processing Pipeline e38bbb7cd356a9bfdd8ba20b822e53d4 https://www.encodeproject.org/files/ENCFF569DGG/@@download/ENCFF569DGG.bam released s3://encode-public/2020/08/06/922c7bf1-dfdc-48e5-a236-2672d0878a1f/ENCFF569DGG.bam ENCODE4 GRCh38 released low read depth, low read length ENCFF931HQI bam bam redacted unfiltered alignments GRCh38 ENCSR869AUE Control ChIP-seq /human-donors/ENCDO280TXL/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF742PEQ/, /files/ENCFF643CGH/ 194718081 ENCODE Processing Pipeline 1195fbac3eea7260b0621ea060684e79 https://www.encodeproject.org/files/ENCFF931HQI/@@download/ENCFF931HQI.bam released s3://encode-public/2017/11/28/6a22ea37-f3d7-4449-b70d-e1c9c063d0bd/ENCFF931HQI.bam ENCODE3 GRCh38 archived low read depth ENCFF006XMK bam bam redacted alignments GRCh38 ENCSR869AUE Control ChIP-seq /human-donors/ENCDO280TXL/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF742PEQ/, /files/ENCFF643CGH/ 135779905 ENCODE Processing Pipeline 757542695bef2caf21769829df97aea0 https://www.encodeproject.org/files/ENCFF006XMK/@@download/ENCFF006XMK.bam released s3://encode-public/2017/11/28/4970e981-ff6b-4ecf-a994-79128b9c0fa0/ENCFF006XMK.bam ENCODE3 GRCh38 archived low read depth ENCFF059WAY bam bam redacted alignments hg19 ENCSR869AUE Control ChIP-seq /human-donors/ENCDO280TXL/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF742PEQ/, /files/ENCFF807MUK/ 135510048 ENCODE Processing Pipeline 5f1e8944079bae5ca9422cf0594708b4 https://www.encodeproject.org/files/ENCFF059WAY/@@download/ENCFF059WAY.bam released s3://encode-public/2018/01/21/6eda77af-5477-47d9-a52f-11bc41419f6b/ENCFF059WAY.bam ENCODE3 hg19 archived low read depth ENCFF836NAG bam bam redacted unfiltered alignments hg19 ENCSR869AUE Control ChIP-seq /human-donors/ENCDO280TXL/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF742PEQ/, /files/ENCFF807MUK/ 191130402 ENCODE Processing Pipeline 2c5ef46f4625557b9f5911ecec80b354 https://www.encodeproject.org/files/ENCFF836NAG/@@download/ENCFF836NAG.bam released s3://encode-public/2018/01/21/9564bcc6-d52f-4c69-be1e-543150348253/ENCFF836NAG.bam ENCODE3 hg19 archived low read depth ENCFF686ZZU bam bam redacted alignments GRCh38 ENCSR869AUE Control ChIP-seq /human-donors/ENCDO280TXL/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF978WTV/, /files/ENCFF722PMX/, /files/ENCFF110MCL/ 1886127371 ENCODE Processing Pipeline 9c543fabfa5ec99e42e36a2655114950 https://www.encodeproject.org/files/ENCFF686ZZU/@@download/ENCFF686ZZU.bam released s3://encode-public/2021/02/04/9aeba082-cd2e-4c5a-a01c-4eaef62dd8dc/ENCFF686ZZU.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF899UYQ bam bam redacted alignments GRCh38 ENCSR869AUE Control ChIP-seq /human-donors/ENCDO280TXL/ NTR:0000427 neurosphere primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF722PMX/ 948333729 ENCODE Processing Pipeline e2e6123099afd370ed83532615baf618 https://www.encodeproject.org/files/ENCFF899UYQ/@@download/ENCFF899UYQ.bam released s3://encode-public/2021/02/12/81bfd68b-9164-46f6-ab57-46990abfc4b7/ENCFF899UYQ.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF907FWO fastq fastq reads ENCSR697UDH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 2136914391 Richard Myers, HAIB 044a6ad3199feae850d6523f419af3d3 SRA:SRR14107946 https://www.encodeproject.org/files/ENCFF907FWO/@@download/ENCFF907FWO.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/05/02/ce4c0861-7e29-4577-b8b1-1e277112d777/ENCFF907FWO.fastq.gz mild to moderate bottlenecking ENCFF813SJN bam bam unfiltered alignments GRCh38 ENCSR697UDH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF907FWO/ 2178264046 ENCODE Processing Pipeline b9e6b4a03dba4ec285ad392a97fe1617 https://www.encodeproject.org/files/ENCFF813SJN/@@download/ENCFF813SJN.bam released s3://encode-public/2020/05/11/7ec3f654-ee2a-4012-be67-9d58283cafa9/ENCFF813SJN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF703CJC bam bam alignments GRCh38 ENCSR697UDH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF907FWO/ 1271014600 ENCODE Processing Pipeline 93b3044237563a67818e4a0bb687731f https://www.encodeproject.org/files/ENCFF703CJC/@@download/ENCFF703CJC.bam released s3://encode-public/2020/05/11/6b9f7cee-6bf9-4776-8427-515f929fb702/ENCFF703CJC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF422ADU fastq fastq reads ENCSR308QHN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57547/'], '@type': ['Target', 'Item'], 'name': 'ZNF624-human', 'label': 'ZNF624', '@id': '/targets/ZNF624-human/', 'title': 'ZNF624 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5caab2fa-8d05-4185-8785-e3cc70d33c71', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF752KUH/ 2225229972 Michael Snyder, Stanford ca08c1fae179d58a594528186fbed48b SRA:SRR14104385 https://www.encodeproject.org/files/ENCFF422ADU/@@download/ENCFF422ADU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/64c889bd-12e3-448d-9e09-a3480498f52b/ENCFF422ADU.fastq.gz mild to moderate bottlenecking ENCFF752KUH fastq fastq reads ENCSR308QHN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57547/'], '@type': ['Target', 'Item'], 'name': 'ZNF624-human', 'label': 'ZNF624', '@id': '/targets/ZNF624-human/', 'title': 'ZNF624 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5caab2fa-8d05-4185-8785-e3cc70d33c71', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF422ADU/ 2063456858 Michael Snyder, Stanford 517f72c8043418db33cdd6b87dbbc2d2 SRA:SRR14104385 https://www.encodeproject.org/files/ENCFF752KUH/@@download/ENCFF752KUH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/90ffefb8-3ab2-4d8d-810a-d28135ab2490/ENCFF752KUH.fastq.gz mild to moderate bottlenecking ENCFF838QUS bam bam alignments GRCh38 ENCSR308QHN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57547/'], '@type': ['Target', 'Item'], 'name': 'ZNF624-human', 'label': 'ZNF624', '@id': '/targets/ZNF624-human/', 'title': 'ZNF624 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5caab2fa-8d05-4185-8785-e3cc70d33c71', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF752KUH/, /files/ENCFF422ADU/ 3151712050 ENCODE Processing Pipeline 2fe08fb2937a806916e3add8d1604f5c https://www.encodeproject.org/files/ENCFF838QUS/@@download/ENCFF838QUS.bam released s3://encode-public/2020/04/20/2b582f6d-c8d7-4dec-87f1-5615977e45d9/ENCFF838QUS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF342PTV bam bam unfiltered alignments GRCh38 ENCSR308QHN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57547/'], '@type': ['Target', 'Item'], 'name': 'ZNF624-human', 'label': 'ZNF624', '@id': '/targets/ZNF624-human/', 'title': 'ZNF624 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5caab2fa-8d05-4185-8785-e3cc70d33c71', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF752KUH/, /files/ENCFF422ADU/ 4118854011 ENCODE Processing Pipeline 9e4cfae815aa6f3ee56eda18307444bd https://www.encodeproject.org/files/ENCFF342PTV/@@download/ENCFF342PTV.bam released s3://encode-public/2020/04/20/9680722c-1192-4ed0-90c7-a47f6c3d9e59/ENCFF342PTV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF637RQH fastq fastq reads ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2145208379 Bing Ren, UCSD b4b825ac0194bf8cb8cd2a93807ff233 SRA:SRR3651789 https://www.encodeproject.org/files/ENCFF637RQH/@@download/ENCFF637RQH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/fd809007-0ede-411f-bf10-88ce83167ae4/ENCFF637RQH.fastq.gz ENCFF324AEZ fastq fastq reads ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2387451567 Bing Ren, UCSD b3dd7c1aa5e62f781244f7a4c59d9b74 SRA:SRR3651792 https://www.encodeproject.org/files/ENCFF324AEZ/@@download/ENCFF324AEZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2015/06/19/7a5d4774-4c7a-46d7-9ad8-f59cc8f1442d/ENCFF324AEZ.fastq.gz ENCFF101KOM bam bam alignments mm10-minimal ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF324AEZ/, /files/ENCFF806TVZ/ 2058687270 ENCODE Processing Pipeline 110c6debd0b7337ab01d2a47d335e98a https://www.encodeproject.org/files/ENCFF101KOM/@@download/ENCFF101KOM.bam archived s3://encode-public/2015/06/24/534a2ff5-8933-4ac4-a0a5-bc6351a89ba0/ENCFF101KOM.bam ENCFF069WCH bam bam alignments mm10-minimal ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF637RQH/ 1843922066 ENCODE Processing Pipeline a618b33fdf092a30e013049497a10711 https://www.encodeproject.org/files/ENCFF069WCH/@@download/ENCFF069WCH.bam archived s3://encode-public/2015/06/24/5716ca89-cc6c-4d91-81d4-af4eadb71af4/ENCFF069WCH.bam ENCFF765PTY fastq fastq reads ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 383068003 Bing Ren, UCSD 87f6ccff6baa4b0780e081ec1029bff7 SRA:SRR3651790 https://www.encodeproject.org/files/ENCFF765PTY/@@download/ENCFF765PTY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/d50b68df-3ab2-4112-8520-16484c34aa83/ENCFF765PTY.fastq.gz ENCFF321TUD fastq fastq reads ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 502838566 Bing Ren, UCSD 666a9ff34243bf6570de4721c86803a1 SRA:SRR3651793 https://www.encodeproject.org/files/ENCFF321TUD/@@download/ENCFF321TUD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/b3608654-d556-4ed9-8dd0-a45fce52fcb4/ENCFF321TUD.fastq.gz ENCFF267KQD fastq fastq reads ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 267224474 Bing Ren, UCSD 0325734737420f7740fa4c666d515c6b SRA:SRR3651794 https://www.encodeproject.org/files/ENCFF267KQD/@@download/ENCFF267KQD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/aff9a178-dd73-4940-b267-d4fa428c5625/ENCFF267KQD.fastq.gz ENCFF165AZK fastq fastq reads ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 588323278 Bing Ren, UCSD 832d21aec26f0a48a43fe6182688cf45 SRA:SRR3651791 https://www.encodeproject.org/files/ENCFF165AZK/@@download/ENCFF165AZK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/38d4117a-4d21-44eb-8e16-8c9b2bfb664f/ENCFF165AZK.fastq.gz ENCFF822ASN bam bam unfiltered alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF165AZK/, /files/ENCFF637RQH/, /files/ENCFF765PTY/ 4099533768 ENCODE Processing Pipeline e517946012d4479e1c2daa21301a2c61 https://www.encodeproject.org/files/ENCFF822ASN/@@download/ENCFF822ASN.bam released s3://encode-public/2016/07/18/21777265-60ab-4335-8505-854b7306b441/ENCFF822ASN.bam ENCODE3 mm10 archived ENCFF417ZSV bam bam unfiltered alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF321TUD/, /files/ENCFF324AEZ/, /files/ENCFF267KQD/, /files/ENCFF018NEO/ 4076707614 ENCODE Processing Pipeline bd084fbb839ed4532013904a2b707c57 https://www.encodeproject.org/files/ENCFF417ZSV/@@download/ENCFF417ZSV.bam released s3://encode-public/2016/07/18/9f801ea0-f65f-4e00-a4c9-d8c37852bba8/ENCFF417ZSV.bam ENCODE3 mm10 archived ENCFF814RAT bam bam alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF321TUD/, /files/ENCFF324AEZ/, /files/ENCFF267KQD/, /files/ENCFF018NEO/ 2857505279 ENCODE Processing Pipeline b0a5e41ffbd41e836dd696cefbe5655e https://www.encodeproject.org/files/ENCFF814RAT/@@download/ENCFF814RAT.bam released s3://encode-public/2016/07/18/241fe2de-ecfe-495d-be9c-48f1cb762792/ENCFF814RAT.bam ENCODE3 mm10 archived ENCFF904KQI bam bam alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF165AZK/, /files/ENCFF637RQH/, /files/ENCFF765PTY/ 2855527847 ENCODE Processing Pipeline 5d01e5ae5c2e439dd41643fdd25712ca https://www.encodeproject.org/files/ENCFF904KQI/@@download/ENCFF904KQI.bam released s3://encode-public/2016/07/18/07782777-db5d-4c87-a7c7-29ecba0d4e7b/ENCFF904KQI.bam ENCODE3 mm10 archived ENCFF408NKA bam bam unfiltered alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF267KQD/, /files/ENCFF309GLL/, /files/ENCFF321TUD/, /files/ENCFF324AEZ/ 3969508110 ENCODE Processing Pipeline da44240549d804a12221a5b0b59d923e https://www.encodeproject.org/files/ENCFF408NKA/@@download/ENCFF408NKA.bam released s3://encode-public/2020/10/08/4a81490c-6d28-4a9b-8fa6-9ee24054116e/ENCFF408NKA.bam ENCODE4 v1.5.1 mm10 released ENCFF225QJG bam bam alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF309GLL/, /files/ENCFF637RQH/, /files/ENCFF165AZK/, /files/ENCFF765PTY/ 2912318569 ENCODE Processing Pipeline 9cf291067356a432233b72973a72364d https://www.encodeproject.org/files/ENCFF225QJG/@@download/ENCFF225QJG.bam released s3://encode-public/2020/10/08/f683e836-8d78-4642-b651-09b2d043add6/ENCFF225QJG.bam ENCODE4 v1.5.1 mm10 released ENCFF579OWK bam bam unfiltered alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF309GLL/, /files/ENCFF637RQH/, /files/ENCFF165AZK/, /files/ENCFF765PTY/ 3986905461 ENCODE Processing Pipeline ad7fe6b7240edef8d53035ec2b4ff3e3 https://www.encodeproject.org/files/ENCFF579OWK/@@download/ENCFF579OWK.bam released s3://encode-public/2020/10/08/b6eb5ff5-9b95-446b-bdb9-7d3e1c1d593a/ENCFF579OWK.bam ENCODE4 v1.5.1 mm10 released ENCFF078YVF bam bam alignments mm10 ENCSR295GGT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-06-23 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF267KQD/, /files/ENCFF309GLL/, /files/ENCFF321TUD/, /files/ENCFF324AEZ/ 2944386784 ENCODE Processing Pipeline 7557d066b7cda7559c3fa596b0996655 https://www.encodeproject.org/files/ENCFF078YVF/@@download/ENCFF078YVF.bam released s3://encode-public/2020/10/08/f5d40441-284e-4187-99fe-d5c7bd9a15d3/ENCFF078YVF.bam ENCODE4 v1.5.1 mm10 released ENCFF515OUC fastq fastq reads ENCSR603VTC Control ChIP-seq /human-donors/ENCDO670CKN/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 392387737 Zhiping Weng, UMass e8d8c70eb889c8b695e52f9c592cc4b4 SRA:SRR1067410 https://www.encodeproject.org/files/ENCFF515OUC/@@download/ENCFF515OUC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/db7519ff-db34-42d3-a5da-00f849c192e6/ENCFF515OUC.fastq.gz low read depth, low read length ENCFF582CRV fastq fastq reads ENCSR603VTC Control 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ENCSR603VTC Control ChIP-seq /human-donors/ENCDO670CKN/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF582CRV/, /files/ENCFF643CGH/, /files/ENCFF515OUC/ 930893948 ENCODE Processing Pipeline 1ca55bb5773a003d731dca6532bed046 https://www.encodeproject.org/files/ENCFF067UIL/@@download/ENCFF067UIL.bam released s3://encode-public/2016/12/19/bdd5d580-9fb0-4c22-b94d-394728ed35e6/ENCFF067UIL.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF393EMH bam bam unfiltered alignments hg19 ENCSR603VTC Control ChIP-seq /human-donors/ENCDO670CKN/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF582CRV/, /files/ENCFF807MUK/, /files/ENCFF515OUC/ 925420696 ENCODE Processing Pipeline e3aaef44809490433f71dea2ff91d407 https://www.encodeproject.org/files/ENCFF393EMH/@@download/ENCFF393EMH.bam released s3://encode-public/2016/12/19/69a72fee-1982-4879-ba84-9de1188be2d5/ENCFF393EMH.bam ENCODE3 hg19 archived low read depth, low read length ENCFF946LBA bam bam alignments hg19 ENCSR603VTC Control ChIP-seq /human-donors/ENCDO670CKN/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF582CRV/, /files/ENCFF807MUK/, /files/ENCFF515OUC/ 687479066 ENCODE Processing Pipeline bef683c0e902c0e65114a8546a338c5b https://www.encodeproject.org/files/ENCFF946LBA/@@download/ENCFF946LBA.bam released s3://encode-public/2016/12/19/8142454a-d78f-4b16-8ed4-ddaac0b8a6fa/ENCFF946LBA.bam ENCODE3 hg19 archived low read depth, low read length ENCFF603OAT tagAlign tagAlign alignments hg19 ENCSR603VTC Control ChIP-seq /human-donors/ENCDO670CKN/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF582CRV/, /files/ENCFF515OUC/ 112340041 Anshul Kundaje, Stanford a03e38535a6492a1f1340635b6cd8080 https://www.encodeproject.org/files/ENCFF603OAT/@@download/ENCFF603OAT.tagAlign.gz archived s3://encode-public/2016/02/11/2a2a6edf-319f-4d8b-a67e-dea9044058b4/ENCFF603OAT.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF706QQX bam bam unfiltered alignments GRCh38 ENCSR603VTC Control ChIP-seq /human-donors/ENCDO670CKN/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF515OUC/, /files/ENCFF110MCL/, /files/ENCFF582CRV/ 913433156 ENCODE Processing Pipeline ace65545b5fd40f8aa319e887f268619 https://www.encodeproject.org/files/ENCFF706QQX/@@download/ENCFF706QQX.bam released s3://encode-public/2020/10/08/2d2d5af1-62fe-4148-9e60-39e04e6d4e3b/ENCFF706QQX.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF144TSQ bam bam alignments GRCh38 ENCSR603VTC Control ChIP-seq /human-donors/ENCDO670CKN/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF515OUC/, /files/ENCFF110MCL/, /files/ENCFF582CRV/ 748943182 ENCODE Processing Pipeline 633dff18300d6b459c3a8272fae859d7 https://www.encodeproject.org/files/ENCFF144TSQ/@@download/ENCFF144TSQ.bam released s3://encode-public/2020/10/08/9330a994-2207-4d12-b043-d0dd885d6bc5/ENCFF144TSQ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF041EAJ fastq fastq reads ENCSR278PHU Control ChIP-seq /fly-donors/ENCDO054SCL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42650/'], '@type': ['Target', 'Item'], 'name': 'CG7045-dmelanogaster', 'label': 'CG7045', '@id': '/targets/CG7045-dmelanogaster/', 'title': 'CG7045 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6fa9fe27-16b8-428b-91e0-9b98d82116a0', 'status': 'released'} dm3 3R 22480834 22502166 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 680640148 Kevin White, UChicago 519edd3489de497b695fb82cda2ad7f1 https://www.encodeproject.org/files/ENCFF041EAJ/@@download/ENCFF041EAJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/2e3a91a3-6d8e-45e6-99ab-5bfce69118e8/ENCFF041EAJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF691GGV bam bam alignments dm6 ENCSR278PHU Control ChIP-seq /fly-donors/ENCDO054SCL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42650/'], '@type': ['Target', 'Item'], 'name': 'CG7045-dmelanogaster', 'label': 'CG7045', '@id': '/targets/CG7045-dmelanogaster/', 'title': 'CG7045 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6fa9fe27-16b8-428b-91e0-9b98d82116a0', 'status': 'released'} dm3 3R 22480834 22502166 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF041EAJ/, /files/ENCFF479RCH/ 903081291 Kevin White, UChicago af7964c793652c8cc9f07ef7a0da90d1 https://www.encodeproject.org/files/ENCFF691GGV/@@download/ENCFF691GGV.bam released s3://encode-public/2016/12/22/78d47ea6-45ec-4e74-abfd-2d0631bbe05c/ENCFF691GGV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF410XLO bam bam alignments dm3 ENCSR278PHU Control ChIP-seq /fly-donors/ENCDO054SCL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42650/'], '@type': ['Target', 'Item'], 'name': 'CG7045-dmelanogaster', 'label': 'CG7045', '@id': '/targets/CG7045-dmelanogaster/', 'title': 'CG7045 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6fa9fe27-16b8-428b-91e0-9b98d82116a0', 'status': 'released'} dm3 3R 22480834 22502166 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF041EAJ/, /files/ENCFF059UHX/ 914387946 Kevin White, UChicago 08e1c529a79752fe0d06fc8e9f79a928 https://www.encodeproject.org/files/ENCFF410XLO/@@download/ENCFF410XLO.bam released s3://encode-public/2016/12/22/15ce5f28-cb46-4000-9187-9c427ec3152d/ENCFF410XLO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF520CHG bigWig bigWig signal of unique reads dm3 ENCSR278PHU Control ChIP-seq /fly-donors/ENCDO054SCL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42650/'], '@type': ['Target', 'Item'], 'name': 'CG7045-dmelanogaster', 'label': 'CG7045', '@id': '/targets/CG7045-dmelanogaster/', 'title': 'CG7045 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6fa9fe27-16b8-428b-91e0-9b98d82116a0', 'status': 'released'} dm3 3R 22480834 22502166 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF410XLO/ 15414827 Kevin White, UChicago 227bfe35183b4d8d83f6942e009f647d https://www.encodeproject.org/files/ENCFF520CHG/@@download/ENCFF520CHG.bigWig released s3://encode-public/2017/01/03/e7cb5c37-4d4b-4dff-80c4-f79edfda57b0/ENCFF520CHG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF176TEN bigWig bigWig read-depth normalized signal dm3 ENCSR278PHU Control ChIP-seq /fly-donors/ENCDO054SCL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42650/'], '@type': ['Target', 'Item'], 'name': 'CG7045-dmelanogaster', 'label': 'CG7045', '@id': '/targets/CG7045-dmelanogaster/', 'title': 'CG7045 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6fa9fe27-16b8-428b-91e0-9b98d82116a0', 'status': 'released'} dm3 3R 22480834 22502166 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF410XLO/ 15412981 Kevin White, UChicago e477807c2a9a0d9f3f79eaf022ac6c42 https://www.encodeproject.org/files/ENCFF176TEN/@@download/ENCFF176TEN.bigWig released s3://encode-public/2017/01/03/4e08da91-8f70-41f9-9246-d20576936b73/ENCFF176TEN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF993PVU bigWig bigWig read-depth normalized signal dm6 ENCSR278PHU Control ChIP-seq /fly-donors/ENCDO054SCL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42650/'], '@type': ['Target', 'Item'], 'name': 'CG7045-dmelanogaster', 'label': 'CG7045', '@id': '/targets/CG7045-dmelanogaster/', 'title': 'CG7045 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6fa9fe27-16b8-428b-91e0-9b98d82116a0', 'status': 'released'} dm3 3R 22480834 22502166 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF691GGV/ 17514144 Kevin White, UChicago 0aecba672298be7f1cb7e446cf7da508 https://www.encodeproject.org/files/ENCFF993PVU/@@download/ENCFF993PVU.bigWig released s3://encode-public/2017/01/04/6197c10e-0feb-4ef0-ab26-586641b5622d/ENCFF993PVU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF913UJW bigWig bigWig signal of unique reads dm6 ENCSR278PHU Control ChIP-seq /fly-donors/ENCDO054SCL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42650/'], '@type': ['Target', 'Item'], 'name': 'CG7045-dmelanogaster', 'label': 'CG7045', '@id': '/targets/CG7045-dmelanogaster/', 'title': 'CG7045 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '6fa9fe27-16b8-428b-91e0-9b98d82116a0', 'status': 'released'} dm3 3R 22480834 22502166 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF691GGV/ 17509762 Kevin White, UChicago 6d5b4688e8ec6d5f223b1946736f0f15 https://www.encodeproject.org/files/ENCFF913UJW/@@download/ENCFF913UJW.bigWig released s3://encode-public/2017/01/04/957f5cc0-ef78-4800-9f2c-c5dee0eee144/ENCFF913UJW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF621TFF fastq fastq reads ENCSR782TWP Control ChIP-seq /worm-donors/ENCDO150BUA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 476345833 Kevin White, UChicago 46136f966100059f929ae25e6ca349c5 https://www.encodeproject.org/files/ENCFF621TFF/@@download/ENCFF621TFF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/b0d7efca-11aa-4402-a774-f7d008acb43d/ENCFF621TFF.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF488JTZ bam bam alignments ce10 ENCSR782TWP Control ChIP-seq /worm-donors/ENCDO150BUA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF621TFF/ 475251656 Kevin White, UChicago 809533b7a3e70374f87d04a56a5258ab https://www.encodeproject.org/files/ENCFF488JTZ/@@download/ENCFF488JTZ.bam released s3://encode-public/2015/08/19/15cc91a8-cc75-4048-b8b0-963155ffb47c/ENCFF488JTZ.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF412XTZ bigWig bigWig signal of unique reads ce10 ENCSR782TWP Control ChIP-seq /worm-donors/ENCDO150BUA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF488JTZ/ 9952135 Kevin White, UChicago aa1290619a1b41275acdcdc29317594b https://www.encodeproject.org/files/ENCFF412XTZ/@@download/ENCFF412XTZ.bigWig released s3://encode-public/2015/10/02/2dd03d9d-40b7-463b-95b6-2fc1de86f768/ENCFF412XTZ.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF358HRN bigWig bigWig read-depth normalized signal ce10 ENCSR782TWP Control ChIP-seq /worm-donors/ENCDO150BUA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF488JTZ/ 9956439 Kevin White, UChicago 6135af2d5065d561b7b462541ace309f https://www.encodeproject.org/files/ENCFF358HRN/@@download/ENCFF358HRN.bigWig released s3://encode-public/2015/10/02/4fa3c3fe-464b-48ff-bd4f-d5d8da19b44f/ENCFF358HRN.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF466EWY bam bam alignments ce11 ENCSR782TWP Control ChIP-seq /worm-donors/ENCDO150BUA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 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'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF466EWY/ 9948445 Kevin White, UChicago 7cf22fdbca0efcb7d1c46f1a54029353 https://www.encodeproject.org/files/ENCFF665DDY/@@download/ENCFF665DDY.bigWig released s3://encode-public/2016/02/03/c3f3b7c9-4f21-4e5c-b9a7-4b49246fa92a/ENCFF665DDY.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF851MZD bigWig bigWig read-depth normalized signal ce11 ENCSR782TWP Control ChIP-seq /worm-donors/ENCDO150BUA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172116/'], '@type': ['Target', 'Item'], 'name': 'him-1-celegans', 'label': 'him-1', '@id': '/targets/him-1-celegans/', 'title': 'him-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '246f0ab0-d327-4750-a72e-378f7e7bc04f', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF466EWY/ 9957011 Kevin White, UChicago 644a9931dfcb317febac6571547ae197 https://www.encodeproject.org/files/ENCFF851MZD/@@download/ENCFF851MZD.bigWig released s3://encode-public/2016/02/03/3b8c694c-cd1a-4a79-9352-ad5694dcd967/ENCFF851MZD.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genetic modification reagents ENCFF449BMA tagAlign tagAlign alignments hg19 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF767BGX/, /files/ENCFF313MQI/ 242700103 Anshul Kundaje, Stanford d83a3106d1ce3a85b309ad69022f91b0 https://www.encodeproject.org/files/ENCFF449BMA/@@download/ENCFF449BMA.tagAlign.gz archived s3://encode-public/2016/03/30/f1656bb4-6db7-46b3-9664-dddd0faedc2a/ENCFF449BMA.tagAlign.gz Lab custom hg19 archived low read length ENCFF089PAE tagAlign tagAlign alignments hg19 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF388OVY/, /files/ENCFF907ZAE/, /files/ENCFF430QBM/, /files/ENCFF144LGB/ 271470733 Anshul Kundaje, Stanford 1abf8fcf54e3867c2c26d96cd358d630 https://www.encodeproject.org/files/ENCFF089PAE/@@download/ENCFF089PAE.tagAlign.gz archived s3://encode-public/2016/03/30/a4c3a6d9-7d26-4e16-9805-822cdc469e39/ENCFF089PAE.tagAlign.gz Lab custom hg19 archived low read length ENCFF907ZAE fastq fastq reads ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 519618697 Zhiping Weng, UMass 79abc575810e0448e6e7c79831c9760d SRA:SRR1067278 https://www.encodeproject.org/files/ENCFF907ZAE/@@download/ENCFF907ZAE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/524ff670-34b0-4dfe-8abf-0d776c4ac5cb/ENCFF907ZAE.fastq.gz low read length ENCFF388OVY fastq fastq reads ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 521440411 Zhiping Weng, UMass 6dc208f6daaf676c7bc3daa5a79ad0a2 SRA:SRR1067138 https://www.encodeproject.org/files/ENCFF388OVY/@@download/ENCFF388OVY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/705b2170-29cf-46c5-9697-a7700b53c5d3/ENCFF388OVY.fastq.gz low read length ENCFF144LGB fastq fastq reads ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 526883209 Zhiping Weng, UMass fd16f85105643296e1c439d61694afc8 SRA:SRR1067344 https://www.encodeproject.org/files/ENCFF144LGB/@@download/ENCFF144LGB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/1666d815-96a8-4d43-b2e5-18684618c00e/ENCFF144LGB.fastq.gz low read length ENCFF430QBM fastq fastq reads ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 520893876 Zhiping Weng, UMass 5c8b107281d0d8b83f28d8b203f23217 SRA:SRR1067211 https://www.encodeproject.org/files/ENCFF430QBM/@@download/ENCFF430QBM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/ab1a4ff7-aa26-455f-8d57-86f2e900927c/ENCFF430QBM.fastq.gz low read length ENCFF873CHB bam bam unfiltered alignments GRCh38 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF907ZAE/, /files/ENCFF430QBM/, /files/ENCFF144LGB/, /files/ENCFF388OVY/, /files/ENCFF643CGH/ 2430516972 ENCODE Processing Pipeline fbfab4985e6f4d830abe3e9e7525fb52 https://www.encodeproject.org/files/ENCFF873CHB/@@download/ENCFF873CHB.bam released s3://encode-public/2017/12/15/acf1555e-2dcb-4ef4-9a45-414f7b6704d4/ENCFF873CHB.bam ENCODE3 GRCh38 archived low read length ENCFF357GTF bam bam alignments hg19 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF907ZAE/, /files/ENCFF430QBM/, /files/ENCFF144LGB/, /files/ENCFF388OVY/ 1745103519 ENCODE Processing Pipeline 3aeed1a152ddec55f7f1fb3ac03aca83 https://www.encodeproject.org/files/ENCFF357GTF/@@download/ENCFF357GTF.bam released s3://encode-public/2017/12/15/0eafb9ef-a6b3-4dd3-bcb1-6ada09c83bb3/ENCFF357GTF.bam ENCODE3 hg19 archived low read length ENCFF262UBX bam bam unfiltered alignments hg19 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo 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https://www.encodeproject.org/files/ENCFF572TQL/@@download/ENCFF572TQL.bam released s3://encode-public/2017/12/15/7c5c2cdd-eb51-40b3-acc3-e36804fad16b/ENCFF572TQL.bam ENCODE3 GRCh38 archived low read length ENCFF399KLX bam bam redacted alignments hg19 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF313MQI/, /files/ENCFF767BGX/, /files/ENCFF807MUK/ 495392304 ENCODE Processing Pipeline 33777637a8ca591d9128c3fb4f4f7727 https://www.encodeproject.org/files/ENCFF399KLX/@@download/ENCFF399KLX.bam released s3://encode-public/2017/12/15/c728cc8f-4d93-4161-ae62-a86fe8d2e2e4/ENCFF399KLX.bam ENCODE3 hg19 archived low read length ENCFF754OYG bam bam redacted unfiltered alignments hg19 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF313MQI/, /files/ENCFF767BGX/, /files/ENCFF807MUK/ 742543271 ENCODE Processing Pipeline 8c38899c926477acf6471096ecab3d37 https://www.encodeproject.org/files/ENCFF754OYG/@@download/ENCFF754OYG.bam released s3://encode-public/2017/12/15/253b4099-fb9e-4b96-98db-2456de16e8c6/ENCFF754OYG.bam ENCODE3 hg19 archived low read length ENCFF804IRE bam bam redacted alignments GRCh38 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF907ZAE/, /files/ENCFF144LGB/, /files/ENCFF430QBM/, /files/ENCFF388OVY/ 1890944458 ENCODE Processing Pipeline d9e4d0010a41e3132784e22bf648f1db https://www.encodeproject.org/files/ENCFF804IRE/@@download/ENCFF804IRE.bam released s3://encode-public/2021/01/27/94e7c062-eb94-4781-a5e3-41a6e16891c5/ENCFF804IRE.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF827OUA bam bam redacted alignments GRCh38 ENCSR831CKP Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF767BGX/, /files/ENCFF110MCL/, /files/ENCFF313MQI/ 1655529701 ENCODE Processing Pipeline 8c875edddf5db49c937cdb52e3718346 https://www.encodeproject.org/files/ENCFF827OUA/@@download/ENCFF827OUA.bam released s3://encode-public/2021/01/27/68bd34dd-d430-4bd7-91a8-039243616cc5/ENCFF827OUA.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF988QMP tagAlign tagAlign alignments hg19 ENCSR079HOU Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR1270615/ 242246259 Anshul Kundaje, Stanford b61ad8516406e7b4364e144acab839e0 https://www.encodeproject.org/files/ENCFF988QMP/@@download/ENCFF988QMP.tagAlign.gz archived s3://encode-public/2016/03/30/64c80d87-964f-4831-b96a-15beafd2c3f6/ENCFF988QMP.tagAlign.gz Lab custom hg19 archived low read length ENCFF653IUI bam bam redacted unfiltered alignments GRCh38 ENCSR079HOU Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF520CBW/, /files/ENCFF643CGH/ 415227722 ENCODE Processing Pipeline 91144d5563ec6d1576d0eec367fcb673 https://www.encodeproject.org/files/ENCFF653IUI/@@download/ENCFF653IUI.bam released s3://encode-public/2017/10/16/9342338e-e8dd-49ed-acc5-8a58440f0f25/ENCFF653IUI.bam ENCODE3 GRCh38 archived low read length ENCFF328IAC bam bam redacted alignments GRCh38 ENCSR079HOU Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF520CBW/, /files/ENCFF643CGH/ 228237255 ENCODE Processing Pipeline 74d61dcd78c34b30e7c59e561706f3ce https://www.encodeproject.org/files/ENCFF328IAC/@@download/ENCFF328IAC.bam released s3://encode-public/2017/10/16/ce860975-b807-4d74-8a78-d11e60094157/ENCFF328IAC.bam ENCODE3 GRCh38 archived low read length ENCFF503VAP bam bam redacted unfiltered alignments hg19 ENCSR079HOU Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF520CBW/, /files/ENCFF807MUK/ 273135138 ENCODE Processing Pipeline 0841e974ccb1fdb7c4c1aef9bce11e79 https://www.encodeproject.org/files/ENCFF503VAP/@@download/ENCFF503VAP.bam released s3://encode-public/2018/01/20/512e4990-f711-469a-a99d-d1087667c4e1/ENCFF503VAP.bam ENCODE3 hg19 archived low read length ENCFF214FYG bam bam redacted alignments hg19 ENCSR079HOU Control ChIP-seq /human-donors/ENCDO871IWW/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF520CBW/, /files/ENCFF807MUK/ 183983281 ENCODE Processing Pipeline 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/human-donors/ENCDO950XTR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF159NJV/ 1295240383 ENCODE Processing Pipeline bb4b0d15c215315676038936d2fc4394 https://www.encodeproject.org/files/ENCFF698NHQ/@@download/ENCFF698NHQ.bam released s3://encode-public/2020/11/13/1bc02271-b35b-4c3b-8446-180a9039c932/ENCFF698NHQ.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF179EQH fastq fastq reads ENCSR072ENL Control ChIP-seq /human-donors/ENCDO459DTQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1699736454 Zhiping Weng, UMass 46f68d9451c061eaa23af0cf2c48dba2 SRA:SRR1067071 https://www.encodeproject.org/files/ENCFF179EQH/@@download/ENCFF179EQH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/a726978d-135b-413f-b95d-31fbed47ec03/ENCFF179EQH.fastq.gz low read length ENCFF508HKK bam bam 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s3://encode-public/2016/12/19/13a09c0e-69b5-49b2-9a91-988601953bcd/ENCFF852HFM.bam ENCODE3 GRCh38 archived low read length ENCFF725ANI bam bam alignments hg19 ENCSR072ENL Control ChIP-seq /human-donors/ENCDO459DTQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF179EQH/, /files/ENCFF807MUK/ 1372189547 ENCODE Processing Pipeline 8e201e7bc3b6f81d3dbca18d05d63ab7 https://www.encodeproject.org/files/ENCFF725ANI/@@download/ENCFF725ANI.bam released s3://encode-public/2016/12/19/7eb3bc1c-6611-49ad-a263-8dd20194815f/ENCFF725ANI.bam ENCODE3 hg19 archived low read length ENCFF565KJC bam bam alignments GRCh38 ENCSR072ENL Control ChIP-seq /human-donors/ENCDO459DTQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF179EQH/, /files/ENCFF643CGH/ 1371868501 ENCODE Processing Pipeline eb84a80754ac4ea7caed0e24b413092e https://www.encodeproject.org/files/ENCFF565KJC/@@download/ENCFF565KJC.bam released s3://encode-public/2016/12/19/1037876a-95ad-4961-b747-4b4164500727/ENCFF565KJC.bam ENCODE3 GRCh38 archived low read length ENCFF494UPD tagAlign tagAlign alignments hg19 ENCSR072ENL Control ChIP-seq /human-donors/ENCDO459DTQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF179EQH/ 203447689 Anshul Kundaje, Stanford 4469df54ccdaf4d156803e3f2b8a3a28 https://www.encodeproject.org/files/ENCFF494UPD/@@download/ENCFF494UPD.tagAlign.gz archived s3://encode-public/2016/02/11/b64c3b5d-21a7-4db0-aa7f-669cb8e69dca/ENCFF494UPD.tagAlign.gz Lab custom hg19 archived low read length ENCFF766XJH bam bam unfiltered alignments GRCh38 ENCSR072ENL Control ChIP-seq /human-donors/ENCDO459DTQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF179EQH/, /files/ENCFF110MCL/ 1962758759 ENCODE Processing Pipeline c3f9ea2f7f1cccf37f1068f2a7ca0a17 https://www.encodeproject.org/files/ENCFF766XJH/@@download/ENCFF766XJH.bam released s3://encode-public/2020/10/08/4a09cee0-99bd-4a2f-a05b-9e0fe74e6b00/ENCFF766XJH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF780QBX bam bam alignments GRCh38 ENCSR072ENL Control ChIP-seq /human-donors/ENCDO459DTQ/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF179EQH/, /files/ENCFF110MCL/ 1480884058 ENCODE Processing Pipeline 2dcf64a1b182d88d04d35cb77d90e1d0 https://www.encodeproject.org/files/ENCFF780QBX/@@download/ENCFF780QBX.bam released s3://encode-public/2020/10/08/9cf23b6c-ea4a-4d65-94b2-f2557aab1b37/ENCFF780QBX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF812LLF fastq fastq reads ENCSR489LXY Control ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740414/'], '@type': ['Target', 'Item'], 'name': 'Snoo-dmelanogaster', 'label': 'Snoo', '@id': '/targets/Snoo-dmelanogaster/', 'title': 'Snoo (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e10df2ef-f0b1-4fc9-9fa8-7c77683f5c5a', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 113681921 Kevin White, UChicago 6eeef19f24d62d287c5b8a2ae56a52bd https://www.encodeproject.org/files/ENCFF812LLF/@@download/ENCFF812LLF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/20/aeed316f-598a-48ee-9c36-04e7da12e48c/ENCFF812LLF.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF525SDX fastq fastq reads ENCSR489LXY Control ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740414/'], '@type': ['Target', 'Item'], 'name': 'Snoo-dmelanogaster', 'label': 'Snoo', '@id': '/targets/Snoo-dmelanogaster/', 'title': 'Snoo (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e10df2ef-f0b1-4fc9-9fa8-7c77683f5c5a', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 2178056808 Kevin White, UChicago 8d21040e2afb5abaabff0ca0e754d196 https://www.encodeproject.org/files/ENCFF525SDX/@@download/ENCFF525SDX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/d6ccabaa-b61c-43fd-ad8d-f0516452808a/ENCFF525SDX.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF327UKB bam bam alignments dm3 ENCSR489LXY Control ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740414/'], '@type': ['Target', 'Item'], 'name': 'Snoo-dmelanogaster', 'label': 'Snoo', '@id': '/targets/Snoo-dmelanogaster/', 'title': 'Snoo (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e10df2ef-f0b1-4fc9-9fa8-7c77683f5c5a', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF525SDX/, /files/ENCFF059UHX/, /files/ENCFF812LLF/ 2979455417 Kevin White, UChicago 28d85080faf3ea09c3ec11a76bd5d00f https://www.encodeproject.org/files/ENCFF327UKB/@@download/ENCFF327UKB.bam released s3://encode-public/2016/12/23/c4f5260d-822c-4e96-9890-bc35b558ccef/ENCFF327UKB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF362AAA bam bam alignments dm6 ENCSR489LXY Control ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila 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ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740414/'], '@type': ['Target', 'Item'], 'name': 'Snoo-dmelanogaster', 'label': 'Snoo', '@id': '/targets/Snoo-dmelanogaster/', 'title': 'Snoo (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e10df2ef-f0b1-4fc9-9fa8-7c77683f5c5a', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF327UKB/ 15609300 Kevin White, UChicago 06d7a2e37a325e0f4723194256ba8192 https://www.encodeproject.org/files/ENCFF816IKY/@@download/ENCFF816IKY.bigWig released s3://encode-public/2017/01/06/3be6e170-7439-4517-a84a-d96c73516fa9/ENCFF816IKY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF221KIN bigWig bigWig read-depth normalized signal dm6 ENCSR489LXY Control ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740414/'], '@type': ['Target', 'Item'], 'name': 'Snoo-dmelanogaster', 'label': 'Snoo', '@id': '/targets/Snoo-dmelanogaster/', 'title': 'Snoo (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e10df2ef-f0b1-4fc9-9fa8-7c77683f5c5a', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF362AAA/ 17670635 Kevin White, UChicago b4d530a9f46c83ac3e1c53a8756d9148 https://www.encodeproject.org/files/ENCFF221KIN/@@download/ENCFF221KIN.bigWig released s3://encode-public/2017/01/06/d928f488-0c6e-441b-bc2b-51e1277b85f8/ENCFF221KIN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF422QSP bigWig bigWig signal of unique reads dm3 ENCSR489LXY Control ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740414/'], '@type': ['Target', 'Item'], 'name': 'Snoo-dmelanogaster', 'label': 'Snoo', '@id': '/targets/Snoo-dmelanogaster/', 'title': 'Snoo (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e10df2ef-f0b1-4fc9-9fa8-7c77683f5c5a', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF327UKB/ 15571868 Kevin White, UChicago cd9253714643ba996642641c474111a6 https://www.encodeproject.org/files/ENCFF422QSP/@@download/ENCFF422QSP.bigWig released s3://encode-public/2017/01/06/746c05e2-988d-4d53-8108-cefe23f1ffc8/ENCFF422QSP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF382PTI bigWig bigWig signal of unique reads dm6 ENCSR489LXY Control ChIP-seq /fly-donors/ENCDO697IWR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740414/'], '@type': ['Target', 'Item'], 'name': 'Snoo-dmelanogaster', 'label': 'Snoo', '@id': '/targets/Snoo-dmelanogaster/', 'title': 'Snoo (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e10df2ef-f0b1-4fc9-9fa8-7c77683f5c5a', 'status': 'released'} DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF362AAA/ 17611270 Kevin White, UChicago 2b1a6562156bb4efdc33510e3572e555 https://www.encodeproject.org/files/ENCFF382PTI/@@download/ENCFF382PTI.bigWig released s3://encode-public/2017/01/06/20a8744f-d088-4f1d-ac3f-97494af8fbff/ENCFF382PTI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF472SYL fastq fastq reads ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 99785148 Michael Snyder, Stanford ef0bb012d04b0e9faa6f30473d2e91a3 https://www.encodeproject.org/files/ENCFF472SYL/@@download/ENCFF472SYL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/aee0b606-218a-4900-a8cf-22ec9030f74e/ENCFF472SYL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF504CFF fastq fastq reads ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 96610761 Michael Snyder, Stanford 7277cbcaeb9da6f4bc731b05120d88ec https://www.encodeproject.org/files/ENCFF504CFF/@@download/ENCFF504CFF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/aa4c5d46-6f1b-419d-80e0-c48f94f16d03/ENCFF504CFF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF404GAR fastq fastq reads ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 3 3_1 32 single-ended 117567383 Michael Snyder, Stanford 184b5e3bd85086914f3aadbf1e4aa207 https://www.encodeproject.org/files/ENCFF404GAR/@@download/ENCFF404GAR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/77ddfac4-a19d-4005-87ee-636f9883d675/ENCFF404GAR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF972DAN fastq fastq reads ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 5 5_1 32 single-ended 137015228 Michael Snyder, Stanford 9a81c4f00aabd925e8da819b014ed0b3 https://www.encodeproject.org/files/ENCFF972DAN/@@download/ENCFF972DAN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/7ae82f71-4787-4cfa-9bae-3ac3b37de946/ENCFF972DAN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF739YKM fastq fastq reads ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 4 4_1 32 single-ended 138633002 Michael Snyder, Stanford fd892faef7b4b1b3f56394dd8eada457 https://www.encodeproject.org/files/ENCFF739YKM/@@download/ENCFF739YKM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/9f1dc5ca-f290-4a3e-8707-317d3d3cea05/ENCFF739YKM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF762YOD bam bam alignments ce10 ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 1, 3 1_1, 3_1 32 /files/ENCFF987UMF/, /files/ENCFF472SYL/, /files/ENCFF404GAR/ 236542196 Kevin White, UChicago c9f913b3512cbf3db3cf8ebad2717897 https://www.encodeproject.org/files/ENCFF762YOD/@@download/ENCFF762YOD.bam released s3://encode-public/2017/11/01/204be62b-9804-4957-b787-be64004701b2/ENCFF762YOD.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF979LUZ bam bam alignments ce11 ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 1, 3 1_1, 3_1 32 /files/ENCFF586MOL/, /files/ENCFF472SYL/, /files/ENCFF404GAR/ 236717688 Kevin White, UChicago c7771ddb5d1ca5f77f6e7805c36a3409 https://www.encodeproject.org/files/ENCFF979LUZ/@@download/ENCFF979LUZ.bam released s3://encode-public/2017/11/01/914ce87b-d20a-4ed6-a155-093a86fc393c/ENCFF979LUZ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF842YDE bigWig bigWig signal of unique reads ce10 ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF762YOD/ 10052370 Kevin White, UChicago 70a502cb82d288ace99e9a804254411d https://www.encodeproject.org/files/ENCFF842YDE/@@download/ENCFF842YDE.bigWig released s3://encode-public/2017/11/02/9a83e9ff-b0c1-420c-ba39-02bf5cfa06e5/ENCFF842YDE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF179YHY bigWig bigWig read-depth normalized signal ce11 ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF979LUZ/ 9997262 Kevin White, UChicago 8a910d65aa3e68fe1c494a354587e751 https://www.encodeproject.org/files/ENCFF179YHY/@@download/ENCFF179YHY.bigWig released s3://encode-public/2017/11/02/97f2c216-4ed5-4afa-81e9-c57222602f79/ENCFF179YHY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF300BSZ bigWig bigWig signal of unique reads ce11 ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF979LUZ/ 10052368 Kevin White, UChicago bb60b0a732c83631bfee7b3a4148a9a5 https://www.encodeproject.org/files/ENCFF300BSZ/@@download/ENCFF300BSZ.bigWig released s3://encode-public/2017/11/02/46d67b6d-e59a-408c-897c-c5a540acc2d9/ENCFF300BSZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF057JDM bigWig bigWig read-depth normalized signal ce10 ENCSR134PTC Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2018-01-18 modENCODE sonication (generic microtip) 1, 3 1_1, 3_1 /files/ENCFF762YOD/ 9997267 Kevin White, UChicago 6a57d32cffb08d71d3bbd06728f9cff8 https://www.encodeproject.org/files/ENCFF057JDM/@@download/ENCFF057JDM.bigWig released s3://encode-public/2017/11/02/ad4fa296-c104-45de-985d-2e314d9e16d5/ENCFF057JDM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF389SJF fastq fastq reads ENCSR276WUU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5245/'], '@type': ['Target', 'Item'], 'name': 'PHB-human', 'label': 'PHB', '@id': '/targets/PHB-human/', 'title': 'PHB (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '86d764da-be54-44e1-be62-3ea2f824e347', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF489WAG/ 2318860389 Michael Snyder, Stanford 4a136ad82d8895172962dbdadd5e96cd SRA:SRR14841341 https://www.encodeproject.org/files/ENCFF389SJF/@@download/ENCFF389SJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/24/d554c764-ab69-4d37-a193-62b0e5d137db/ENCFF389SJF.fastq.gz ENCFF489WAG fastq fastq reads ENCSR276WUU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5245/'], '@type': ['Target', 'Item'], 'name': 'PHB-human', 'label': 'PHB', '@id': '/targets/PHB-human/', 'title': 'PHB (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '86d764da-be54-44e1-be62-3ea2f824e347', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF389SJF/ 2939771407 Michael Snyder, Stanford 2313cb3d6c54870b3e38762e8e5ae4a5 SRA:SRR14841341 https://www.encodeproject.org/files/ENCFF489WAG/@@download/ENCFF489WAG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/24/42730348-eda1-4e9e-89e6-57294ec8d310/ENCFF489WAG.fastq.gz ENCFF960GDF bam bam alignments GRCh38 ENCSR276WUU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5245/'], '@type': ['Target', 'Item'], 'name': 'PHB-human', 'label': 'PHB', '@id': '/targets/PHB-human/', 'title': 'PHB (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '86d764da-be54-44e1-be62-3ea2f824e347', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF389SJF/, /files/ENCFF489WAG/ 4191706323 ENCODE Processing Pipeline 6ce63feeaeea6ec8a5e717bcdd6db9cf https://www.encodeproject.org/files/ENCFF960GDF/@@download/ENCFF960GDF.bam released s3://encode-public/2020/04/21/9e9dec60-2375-4810-b8c5-f6517509e8a7/ENCFF960GDF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF520AVG bam bam unfiltered alignments GRCh38 ENCSR276WUU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5245/'], '@type': ['Target', 'Item'], 'name': 'PHB-human', 'label': 'PHB', '@id': '/targets/PHB-human/', 'title': 'PHB (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '86d764da-be54-44e1-be62-3ea2f824e347', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF389SJF/, /files/ENCFF489WAG/ 5371274152 ENCODE Processing Pipeline 86e692cca68dfe78fa7193f86c0f6482 https://www.encodeproject.org/files/ENCFF520AVG/@@download/ENCFF520AVG.bam released s3://encode-public/2020/04/21/586af7d7-d965-4164-bea5-278d0feb18ed/ENCFF520AVG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF917OVH fastq fastq reads ENCSR377KXD Control ChIP-seq /fly-donors/ENCDO282LEV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41855/'], '@type': ['Target', 'Item'], 'name': 'CG6276-dmelanogaster', 'label': 'CG6276', '@id': '/targets/CG6276-dmelanogaster/', 'title': 'CG6276 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8625acba-f93b-471b-9e1c-25c2182688fe', 'status': 'released'} dm3 3R 11131231 11155411 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1270746612 Kevin White, UChicago 1f5dc567ee10f7e787aaf0cd912d2208 https://www.encodeproject.org/files/ENCFF917OVH/@@download/ENCFF917OVH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/3f0b7ad5-2450-45e4-9893-b8c867316984/ENCFF917OVH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF318IXH bam bam alignments dm3 ENCSR377KXD Control ChIP-seq /fly-donors/ENCDO282LEV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41855/'], '@type': ['Target', 'Item'], 'name': 'CG6276-dmelanogaster', 'label': 'CG6276', '@id': '/targets/CG6276-dmelanogaster/', 'title': 'CG6276 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8625acba-f93b-471b-9e1c-25c2182688fe', 'status': 'released'} dm3 3R 11131231 11155411 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF917OVH/, /files/ENCFF059UHX/ 1676435939 Kevin White, UChicago ca0631f310853d89c2709beccada7af3 https://www.encodeproject.org/files/ENCFF318IXH/@@download/ENCFF318IXH.bam released s3://encode-public/2016/12/22/2bf4474e-a871-42ec-a932-f6cd647f5e92/ENCFF318IXH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF708FDJ bam bam alignments dm6 ENCSR377KXD Control ChIP-seq /fly-donors/ENCDO282LEV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41855/'], '@type': ['Target', 'Item'], 'name': 'CG6276-dmelanogaster', 'label': 'CG6276', '@id': '/targets/CG6276-dmelanogaster/', 'title': 'CG6276 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8625acba-f93b-471b-9e1c-25c2182688fe', 'status': 'released'} dm3 3R 11131231 11155411 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF917OVH/, /files/ENCFF479RCH/ 1660362781 Kevin White, UChicago f7c1140ff9b5dd833f879921c2736489 https://www.encodeproject.org/files/ENCFF708FDJ/@@download/ENCFF708FDJ.bam released s3://encode-public/2016/12/22/03483d7c-f5c8-47a8-bce4-0b393d29f1f1/ENCFF708FDJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF797MIZ bigWig bigWig signal of unique reads dm3 ENCSR377KXD Control ChIP-seq /fly-donors/ENCDO282LEV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41855/'], '@type': ['Target', 'Item'], 'name': 'CG6276-dmelanogaster', 'label': 'CG6276', '@id': '/targets/CG6276-dmelanogaster/', 'title': 'CG6276 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8625acba-f93b-471b-9e1c-25c2182688fe', 'status': 'released'} dm3 3R 11131231 11155411 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF318IXH/ 15350641 Kevin White, UChicago 5aa42b78bd86872cb85b0fdf6ca0e0cd https://www.encodeproject.org/files/ENCFF797MIZ/@@download/ENCFF797MIZ.bigWig released s3://encode-public/2017/01/03/e8ad311a-1343-4129-8ec9-b376d0276240/ENCFF797MIZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF741CRK bigWig bigWig read-depth normalized signal dm3 ENCSR377KXD Control ChIP-seq /fly-donors/ENCDO282LEV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41855/'], '@type': ['Target', 'Item'], 'name': 'CG6276-dmelanogaster', 'label': 'CG6276', '@id': '/targets/CG6276-dmelanogaster/', 'title': 'CG6276 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8625acba-f93b-471b-9e1c-25c2182688fe', 'status': 'released'} dm3 3R 11131231 11155411 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF318IXH/ 15351681 Kevin White, UChicago 5114b71de58d9a5e8402c01d382ea1d4 https://www.encodeproject.org/files/ENCFF741CRK/@@download/ENCFF741CRK.bigWig released s3://encode-public/2017/01/03/1aec9165-c124-4693-a571-ab4de4b888d0/ENCFF741CRK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF549ORA bigWig bigWig read-depth normalized signal dm6 ENCSR377KXD Control ChIP-seq /fly-donors/ENCDO282LEV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41855/'], '@type': ['Target', 'Item'], 'name': 'CG6276-dmelanogaster', 'label': 'CG6276', '@id': '/targets/CG6276-dmelanogaster/', 'title': 'CG6276 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8625acba-f93b-471b-9e1c-25c2182688fe', 'status': 'released'} dm3 3R 11131231 11155411 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF708FDJ/ 17482164 Kevin White, UChicago 3902fcf3ea868069144000006144b7bf https://www.encodeproject.org/files/ENCFF549ORA/@@download/ENCFF549ORA.bigWig released s3://encode-public/2017/01/04/481c5cef-c1ab-4093-af60-73eac5abcfe5/ENCFF549ORA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF833QQQ bigWig bigWig signal of unique reads dm6 ENCSR377KXD Control ChIP-seq /fly-donors/ENCDO282LEV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41855/'], '@type': ['Target', 'Item'], 'name': 'CG6276-dmelanogaster', 'label': 'CG6276', '@id': '/targets/CG6276-dmelanogaster/', 'title': 'CG6276 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8625acba-f93b-471b-9e1c-25c2182688fe', 'status': 'released'} dm3 3R 11131231 11155411 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF708FDJ/ 17475451 Kevin White, UChicago 4e9fcd2af1de70a42abfce93d066031d https://www.encodeproject.org/files/ENCFF833QQQ/@@download/ENCFF833QQQ.bigWig released s3://encode-public/2017/01/04/f056f98f-142d-4813-b474-9e1d6ed68315/ENCFF833QQQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF066CHK tagAlign tagAlign alignments hg19 ENCSR517EEQ Control ChIP-seq /human-donors/ENCDO463PIS/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172603/, /files/SRR2172602/ 95668164 Anshul Kundaje, Stanford dbea4f539fa8243be1b8fc0c26244289 https://www.encodeproject.org/files/ENCFF066CHK/@@download/ENCFF066CHK.tagAlign.gz archived s3://encode-public/2016/02/11/5d9f2aa7-437c-4182-9d86-0034ca5e4e60/ENCFF066CHK.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF692VBT bam bam redacted alignments GRCh38 ENCSR517EEQ Control ChIP-seq /human-donors/ENCDO463PIS/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF900ABM/, /files/ENCFF522MGB/ 304251263 ENCODE Processing Pipeline 78f1e6e9c5f964c62435fe3261f9b25b https://www.encodeproject.org/files/ENCFF692VBT/@@download/ENCFF692VBT.bam released s3://encode-public/2017/11/09/67f8b789-ceb4-4422-b215-83ee9e854456/ENCFF692VBT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF867ELO bam bam redacted unfiltered alignments GRCh38 ENCSR517EEQ Control ChIP-seq /human-donors/ENCDO463PIS/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF900ABM/, /files/ENCFF522MGB/ 477412472 ENCODE Processing Pipeline e8b50df792af66524bfbe8b7d4085b5e https://www.encodeproject.org/files/ENCFF867ELO/@@download/ENCFF867ELO.bam released s3://encode-public/2017/11/09/85b4f2b5-9e5b-4733-b5bb-fab74cf3e530/ENCFF867ELO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF875IBJ bam bam redacted unfiltered alignments hg19 ENCSR517EEQ Control ChIP-seq /human-donors/ENCDO463PIS/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF900ABM/, /files/ENCFF522MGB/ 469137560 ENCODE Processing Pipeline b5f82dfd7697edd6a9c2db435c17303e https://www.encodeproject.org/files/ENCFF875IBJ/@@download/ENCFF875IBJ.bam released s3://encode-public/2018/01/20/af89f5fa-72ca-490b-a120-98f8bea5bd51/ENCFF875IBJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF411PGT bam bam redacted alignments hg19 ENCSR517EEQ Control ChIP-seq /human-donors/ENCDO463PIS/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF900ABM/, /files/ENCFF522MGB/ 303877114 ENCODE Processing Pipeline 159709561069b5b8c817386fbe87332c https://www.encodeproject.org/files/ENCFF411PGT/@@download/ENCFF411PGT.bam released s3://encode-public/2018/01/20/acb5d27b-8c5a-4335-a59d-c1d5aee583a8/ENCFF411PGT.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF233ZBL bam bam redacted alignments GRCh38 ENCSR517EEQ Control ChIP-seq /human-donors/ENCDO463PIS/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF003RNG/, /files/ENCFF883NTJ/ 1508719954 ENCODE Processing Pipeline f0d652ed717e8d0f2c22c02d23285691 https://www.encodeproject.org/files/ENCFF233ZBL/@@download/ENCFF233ZBL.bam released s3://encode-public/2021/01/28/589d9d06-6866-4610-b350-6234ab8f9faf/ENCFF233ZBL.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF219IGE fastq fastq reads ENCSR858HKA Control ChIP-seq /fly-donors/ENCDO165SMX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41445/'], '@type': ['Target', 'Item'], 'name': 'CG3281-dmelanogaster', 'label': 'CG3281', '@id': '/targets/CG3281-dmelanogaster/', 'title': 'CG3281 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4d4a66e7-d288-45a4-b5f1-c2ed6da765af', 'status': 'released'} dm3 3R 7772350 7795832 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2022768563 Kevin White, UChicago a6806fc43f51a5a6938fedd9c543a4b3 https://www.encodeproject.org/files/ENCFF219IGE/@@download/ENCFF219IGE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/21/8a50a59e-f486-4cc7-893c-37b5906423be/ENCFF219IGE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF495DBI bam bam alignments dm3 ENCSR858HKA Control ChIP-seq /fly-donors/ENCDO165SMX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41445/'], '@type': ['Target', 'Item'], 'name': 'CG3281-dmelanogaster', 'label': 'CG3281', '@id': '/targets/CG3281-dmelanogaster/', 'title': 'CG3281 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4d4a66e7-d288-45a4-b5f1-c2ed6da765af', 'status': 'released'} dm3 3R 7772350 7795832 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF219IGE/, /files/ENCFF059UHX/ 2779376369 Kevin White, UChicago 1e6a6ae032b2ecd5332581ba63985317 https://www.encodeproject.org/files/ENCFF495DBI/@@download/ENCFF495DBI.bam released s3://encode-public/2016/12/22/77cc8d97-6135-4f5f-a2af-4ecdf013bd1d/ENCFF495DBI.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF517SYE bam bam alignments dm6 ENCSR858HKA Control ChIP-seq /fly-donors/ENCDO165SMX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41445/'], '@type': ['Target', 'Item'], 'name': 'CG3281-dmelanogaster', 'label': 'CG3281', '@id': '/targets/CG3281-dmelanogaster/', 'title': 'CG3281 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4d4a66e7-d288-45a4-b5f1-c2ed6da765af', 'status': 'released'} dm3 3R 7772350 7795832 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF219IGE/, /files/ENCFF479RCH/ 2751048715 Kevin White, UChicago a9535d89678239099f7f60c75e1ec228 https://www.encodeproject.org/files/ENCFF517SYE/@@download/ENCFF517SYE.bam released s3://encode-public/2016/12/22/a11f6d5e-68f6-4826-b3ef-54bf0e26baf0/ENCFF517SYE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF371GDY bigWig bigWig signal of unique reads dm3 ENCSR858HKA Control ChIP-seq /fly-donors/ENCDO165SMX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41445/'], '@type': ['Target', 'Item'], 'name': 'CG3281-dmelanogaster', 'label': 'CG3281', '@id': '/targets/CG3281-dmelanogaster/', 'title': 'CG3281 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4d4a66e7-d288-45a4-b5f1-c2ed6da765af', 'status': 'released'} dm3 3R 7772350 7795832 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF495DBI/ 15604233 Kevin White, UChicago 7a90347ca759a6647d0d38d4315d5ac6 https://www.encodeproject.org/files/ENCFF371GDY/@@download/ENCFF371GDY.bigWig released s3://encode-public/2017/01/03/ec235d10-f47d-4ff6-b5a8-3fbf31e34ccd/ENCFF371GDY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF935SGM bigWig bigWig read-depth normalized signal dm3 ENCSR858HKA Control ChIP-seq /fly-donors/ENCDO165SMX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41445/'], '@type': ['Target', 'Item'], 'name': 'CG3281-dmelanogaster', 'label': 'CG3281', '@id': '/targets/CG3281-dmelanogaster/', 'title': 'CG3281 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4d4a66e7-d288-45a4-b5f1-c2ed6da765af', 'status': 'released'} dm3 3R 7772350 7795832 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF495DBI/ 15645304 Kevin White, UChicago 5a338ace416d6a5930d90a148af787c3 https://www.encodeproject.org/files/ENCFF935SGM/@@download/ENCFF935SGM.bigWig released s3://encode-public/2017/01/03/ed7a7042-2b36-4a5f-9187-334299fc53eb/ENCFF935SGM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF055DBI bigWig bigWig signal of unique reads dm6 ENCSR858HKA Control ChIP-seq /fly-donors/ENCDO165SMX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41445/'], '@type': ['Target', 'Item'], 'name': 'CG3281-dmelanogaster', 'label': 'CG3281', '@id': '/targets/CG3281-dmelanogaster/', 'title': 'CG3281 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4d4a66e7-d288-45a4-b5f1-c2ed6da765af', 'status': 'released'} dm3 3R 7772350 7795832 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF517SYE/ 17672230 Kevin White, UChicago 86ee1adbc8d36d681c1078a4f837abb1 https://www.encodeproject.org/files/ENCFF055DBI/@@download/ENCFF055DBI.bigWig released s3://encode-public/2017/01/04/22e4e44b-7d28-4f46-aba4-643dc693561b/ENCFF055DBI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF101HIN bigWig bigWig read-depth normalized signal dm6 ENCSR858HKA Control ChIP-seq /fly-donors/ENCDO165SMX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41445/'], '@type': ['Target', 'Item'], 'name': 'CG3281-dmelanogaster', 'label': 'CG3281', '@id': '/targets/CG3281-dmelanogaster/', 'title': 'CG3281 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4d4a66e7-d288-45a4-b5f1-c2ed6da765af', 'status': 'released'} dm3 3R 7772350 7795832 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF517SYE/ 17731856 Kevin White, UChicago e960ba89fe796a7ae6efaabac2b88cee https://www.encodeproject.org/files/ENCFF101HIN/@@download/ENCFF101HIN.bigWig released s3://encode-public/2017/01/04/6efb2218-0d13-4f59-a0e8-4ff21b9c9efb/ENCFF101HIN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF296NLQ fastq fastq reads ENCSR856RWG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 4000022421 Richard Myers, HAIB a65a71a9a5dc85b243f6c332927f540a SRA:SRR14104458 https://www.encodeproject.org/files/ENCFF296NLQ/@@download/ENCFF296NLQ.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/10/22/ef93029a-3212-4949-8d80-4394afad2618/ENCFF296NLQ.fastq.gz mild to moderate bottlenecking ENCFF865PWA bam bam alignments GRCh38 ENCSR856RWG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF296NLQ/ 2131207078 ENCODE Processing Pipeline 9211ca43dba589dda5c658e26e1a08d2 https://www.encodeproject.org/files/ENCFF865PWA/@@download/ENCFF865PWA.bam released s3://encode-public/2020/04/20/c4365822-3be9-4fc1-9646-a3181c5e5a6b/ENCFF865PWA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF046NXG bam bam unfiltered alignments GRCh38 ENCSR856RWG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF296NLQ/ 3534506005 ENCODE Processing Pipeline d81d9e56fe17cba043f6c48887aff450 https://www.encodeproject.org/files/ENCFF046NXG/@@download/ENCFF046NXG.bam released s3://encode-public/2020/04/20/894ef607-58c0-4f7a-b484-5ec8d1bf5d5d/ENCFF046NXG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF580WVU tagAlign tagAlign alignments hg19 ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF358ZQU/ 89851662 Anshul Kundaje, Stanford a13931b48edf5ed8c9c1c051d969f001 https://www.encodeproject.org/files/ENCFF580WVU/@@download/ENCFF580WVU.tagAlign.gz archived s3://encode-public/2016/05/02/b19dfd35-e841-47a3-99f6-83b876b9860d/ENCFF580WVU.tagAlign.gz Lab custom hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF358ZQU fastq fastq reads ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1072620863 Zhiping Weng, UMass 160abda9e30c338266f3e76105c5c81e SRA:SRR1068381 https://www.encodeproject.org/files/ENCFF358ZQU/@@download/ENCFF358ZQU.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/f8bddb26-2209-44ca-9765-20244124ffc3/ENCFF358ZQU.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF337XPB bam bam alignments hg19 ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF358ZQU/ 515505649 ENCODE Processing Pipeline 2edf705e5f26ea1150df2350f89d46fc https://www.encodeproject.org/files/ENCFF337XPB/@@download/ENCFF337XPB.bam released s3://encode-public/2016/12/19/88c4115c-3858-4ae7-b8ea-830dfa209231/ENCFF337XPB.bam ENCODE3 hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF312AFW bam bam unfiltered alignments hg19 ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF358ZQU/ 1240649155 ENCODE Processing Pipeline 6e7eb875252f1c743e966acee68e3ed9 https://www.encodeproject.org/files/ENCFF312AFW/@@download/ENCFF312AFW.bam released s3://encode-public/2016/12/19/b7209e92-b0aa-493f-bacb-fcc5bfb78052/ENCFF312AFW.bam ENCODE3 hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF539XBF bam bam unfiltered alignments GRCh38 ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF358ZQU/ 1248643645 ENCODE Processing Pipeline 801653cd279b9c04da2819e6d2d1aecc https://www.encodeproject.org/files/ENCFF539XBF/@@download/ENCFF539XBF.bam released s3://encode-public/2016/12/19/1026b31d-9c87-4a82-bc49-477ca9ecb497/ENCFF539XBF.bam ENCODE3 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF589TFO bam bam alignments GRCh38 ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF358ZQU/ 515374787 ENCODE Processing Pipeline bfb4c0ff6e60ed1e85ff71fccd9ec5cb https://www.encodeproject.org/files/ENCFF589TFO/@@download/ENCFF589TFO.bam released s3://encode-public/2016/12/19/8160893a-ab96-407c-80f7-983268149d80/ENCFF589TFO.bam ENCODE3 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF136MWN bam bam unfiltered alignments GRCh38 ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF358ZQU/ 1218769734 ENCODE Processing Pipeline a18152cc22a7b43a9206b7bb38877eef https://www.encodeproject.org/files/ENCFF136MWN/@@download/ENCFF136MWN.bam released s3://encode-public/2020/10/08/eb1136b3-f8f8-4540-b708-2fe169a6bcbd/ENCFF136MWN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF127UHM bam bam alignments GRCh38 ENCSR566AEL Control ChIP-seq /human-donors/ENCDO308YQF/ UBERON:0000948 heart tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF358ZQU/ 554359727 ENCODE Processing Pipeline 7c2cc6f44c3fe65294015f7c1e0547ae https://www.encodeproject.org/files/ENCFF127UHM/@@download/ENCFF127UHM.bam released s3://encode-public/2020/10/08/7e997b68-e8bf-4b9c-8352-a3eb6f9f3bab/ENCFF127UHM.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length severe bottlenecking ENCFF991XBB fastq fastq reads ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF048DAV/ 3434904362 Richard Myers, HAIB c891f38919ecc08304119a80d3c3b4ea SRA:SRR6213899 https://www.encodeproject.org/files/ENCFF991XBB/@@download/ENCFF991XBB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/aa37be69-3fbf-4f85-bab4-67bb03983786/ENCFF991XBB.fastq.gz ENCFF048DAV fastq fastq reads ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF991XBB/ 3666743147 Richard Myers, HAIB 6aa1a963e22dea43265bd8d259f36dd9 SRA:SRR6213899 https://www.encodeproject.org/files/ENCFF048DAV/@@download/ENCFF048DAV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/cdfbb73c-06dc-4223-8353-8c92a38da1d3/ENCFF048DAV.fastq.gz ENCFF548ONJ bam bam alignments hg19 ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF991XBB/, /files/ENCFF807MUK/, /files/ENCFF048DAV/ 5678402726 ENCODE Processing Pipeline b59d9d4dde827396c36325d9d9148084 https://www.encodeproject.org/files/ENCFF548ONJ/@@download/ENCFF548ONJ.bam released s3://encode-public/2017/02/02/969b1d61-ceec-47fd-8ea5-c7998e939beb/ENCFF548ONJ.bam ENCODE3 hg19 archived ENCFF887HHN bam bam unfiltered alignments hg19 ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF991XBB/, /files/ENCFF807MUK/, /files/ENCFF048DAV/ 8294763620 ENCODE Processing Pipeline 08588c86ea1171e8967605cb8475c6ec https://www.encodeproject.org/files/ENCFF887HHN/@@download/ENCFF887HHN.bam released s3://encode-public/2017/02/02/0c86020a-e8c1-4adf-8f84-0dccf5ee4c40/ENCFF887HHN.bam ENCODE3 hg19 archived ENCFF762QEO bam bam unfiltered alignments GRCh38 ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF991XBB/, /files/ENCFF048DAV/, /files/ENCFF643CGH/ 8327943646 ENCODE Processing Pipeline f548f1b5aa020ad0da53665ec1f96065 https://www.encodeproject.org/files/ENCFF762QEO/@@download/ENCFF762QEO.bam released s3://encode-public/2017/02/02/7152d3ea-1502-4a8d-a957-eccf0f766656/ENCFF762QEO.bam ENCODE3 GRCh38 archived ENCFF708OSB bam bam alignments GRCh38 ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF991XBB/, /files/ENCFF048DAV/, /files/ENCFF643CGH/ 5685255432 ENCODE Processing Pipeline 698e350915183f84c1f25ced3b940167 https://www.encodeproject.org/files/ENCFF708OSB/@@download/ENCFF708OSB.bam released s3://encode-public/2017/02/02/7be2d183-e30f-4435-ac07-2bee7a99a78c/ENCFF708OSB.bam ENCODE3 GRCh38 archived ENCFF327JJI bam bam unfiltered alignments GRCh38 ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF991XBB/, /files/ENCFF110MCL/, /files/ENCFF048DAV/ 8388465292 ENCODE Processing Pipeline 23667e00139187aca60f816aaa5af737 https://www.encodeproject.org/files/ENCFF327JJI/@@download/ENCFF327JJI.bam released s3://encode-public/2020/10/28/438b2004-56ca-4e8b-95f8-dd5930774bbf/ENCFF327JJI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF530AKR bam bam alignments GRCh38 ENCSR594DIR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF991XBB/, /files/ENCFF110MCL/, /files/ENCFF048DAV/ 5402355561 ENCODE Processing Pipeline db15009125bdc523759c39f3eec3ca5e https://www.encodeproject.org/files/ENCFF530AKR/@@download/ENCFF530AKR.bam released s3://encode-public/2020/10/28/f159ad24-d394-4b10-bf58-363ddcbcae9f/ENCFF530AKR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF087ENY tagAlign tagAlign alignments hg19 ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF952GNX/ 72291841 Anshul Kundaje, Stanford 43283edfbf0fc7fbe18323dff7060dd9 https://www.encodeproject.org/files/ENCFF087ENY/@@download/ENCFF087ENY.tagAlign.gz archived s3://encode-public/2016/05/02/0f74f725-d872-4ac8-89bd-78f7a7812a6e/ENCFF087ENY.tagAlign.gz Lab custom hg19 archived low read depth ENCFF952GNX fastq fastq reads ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 51 single-ended 588441160 Zhiping Weng, UMass 6cf64f2521708ca4a0960dca115e358f SRA:SRR020520 https://www.encodeproject.org/files/ENCFF952GNX/@@download/ENCFF952GNX.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/11/34656ad3-6a07-4147-bfc2-7e6ff89470d0/ENCFF952GNX.fastq.gz low read depth ENCFF354NIF bam bam unfiltered alignments GRCh38 ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF952GNX/ 561673255 ENCODE Processing Pipeline 90fc0c9198d0c5da3e251f82ff588053 https://www.encodeproject.org/files/ENCFF354NIF/@@download/ENCFF354NIF.bam released s3://encode-public/2017/02/15/3d78ce77-07fc-43c5-92e0-7d6cb5d6fafd/ENCFF354NIF.bam ENCODE3 GRCh38 archived low read depth ENCFF502OUS bam bam unfiltered alignments hg19 ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF952GNX/ 559199535 ENCODE Processing Pipeline f4fe5e39fe61ed22ba0db21bf89e6b0a https://www.encodeproject.org/files/ENCFF502OUS/@@download/ENCFF502OUS.bam released s3://encode-public/2017/02/15/9c902929-f0c8-4a32-8aaa-ef7b839fa09f/ENCFF502OUS.bam ENCODE3 hg19 archived low read depth ENCFF354NYZ bam bam alignments hg19 ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF952GNX/ 359812657 ENCODE Processing Pipeline cf93a68451ed63308604a4b398f49ea6 https://www.encodeproject.org/files/ENCFF354NYZ/@@download/ENCFF354NYZ.bam released s3://encode-public/2017/02/15/af16714e-0adb-42a6-bc8c-6aea0defffa9/ENCFF354NYZ.bam ENCODE3 hg19 archived low read depth ENCFF753NUW bam bam alignments GRCh38 ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF952GNX/ 359638469 ENCODE Processing Pipeline 827ca15af7103ca955a73907b2a2ae3e https://www.encodeproject.org/files/ENCFF753NUW/@@download/ENCFF753NUW.bam released s3://encode-public/2017/02/15/4e40328f-eb61-4d49-a2d9-d74ec8c93df4/ENCFF753NUW.bam ENCODE3 GRCh38 archived low read depth ENCFF485WMP bam bam unfiltered alignments GRCh38 ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF952GNX/ 703634081 ENCODE Processing Pipeline 30461b7e329fabcd77752ad1f8063e04 https://www.encodeproject.org/files/ENCFF485WMP/@@download/ENCFF485WMP.bam released s3://encode-public/2020/11/13/3997a65a-a943-4fad-b267-025c063bc728/ENCFF485WMP.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF649XII bam bam alignments GRCh38 ENCSR639BMP Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF952GNX/ 522542978 ENCODE Processing Pipeline e78e2f220df13a8c6ff6f49110f11e7a https://www.encodeproject.org/files/ENCFF649XII/@@download/ENCFF649XII.bam released s3://encode-public/2020/11/13/390fe36b-0a90-4c07-9227-c4f51c619946/ENCFF649XII.bam ENCODE4 v1.6.1 GRCh38 released low read depth ENCFF511JPX fastq fastq reads ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 186534088 Michael Snyder, Stanford 3945b5a7e4bb051bd1f0dda081e9f576 https://www.encodeproject.org/files/ENCFF511JPX/@@download/ENCFF511JPX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/fbf90e98-342c-4e36-9a0e-f4c063ba6b97/ENCFF511JPX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF946BYH fastq fastq reads ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 124458609 Michael Snyder, Stanford 5e29e40a0bb7d14648613d118362b89b https://www.encodeproject.org/files/ENCFF946BYH/@@download/ENCFF946BYH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/c8424343-9423-4f36-94ae-4c7fd2d759fd/ENCFF946BYH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF506PLD bam bam alignments ce10 ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF511JPX/, /files/ENCFF946BYH/, /files/ENCFF987UMF/ 393555686 Kevin White, UChicago 3c46f76b6adac73db3a037fb6841ea57 https://www.encodeproject.org/files/ENCFF506PLD/@@download/ENCFF506PLD.bam released s3://encode-public/2017/04/27/23b08d83-8fbd-4699-9250-e9f713d1677c/ENCFF506PLD.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF070NYH bam bam alignments ce11 ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF511JPX/, /files/ENCFF946BYH/, /files/ENCFF586MOL/ 393952129 Kevin White, UChicago e9129667b3e0836be064499061f047e5 https://www.encodeproject.org/files/ENCFF070NYH/@@download/ENCFF070NYH.bam released s3://encode-public/2017/04/27/57068e97-5645-4536-8d5f-302e484cb06c/ENCFF070NYH.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF076SIK bigWig bigWig read-depth normalized signal ce10 ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF506PLD/ 9969611 Kevin White, UChicago 875f49e5f9c7f797cb60435e285be407 https://www.encodeproject.org/files/ENCFF076SIK/@@download/ENCFF076SIK.bigWig released s3://encode-public/2017/04/29/4107a1d5-c2f1-4791-b11c-12f331e8c4f0/ENCFF076SIK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF966VEU bigWig bigWig signal of unique reads ce10 ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF506PLD/ 10023544 Kevin White, UChicago e9133e6a1343d8909cc6698ae7f2e114 https://www.encodeproject.org/files/ENCFF966VEU/@@download/ENCFF966VEU.bigWig released s3://encode-public/2017/04/29/c3084547-3d9c-43d5-a8b4-e06653bda68a/ENCFF966VEU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF728WMV bigWig bigWig read-depth normalized signal ce11 ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF070NYH/ 9968734 Kevin White, UChicago cc78316a617c48aed31717773101d6cd https://www.encodeproject.org/files/ENCFF728WMV/@@download/ENCFF728WMV.bigWig released s3://encode-public/2017/04/29/c0f310c5-602e-403f-b9c1-a3c5e4d16bc5/ENCFF728WMV.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF084PWL bigWig bigWig signal of unique reads ce11 ENCSR799ODD Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF070NYH/ 10024816 Kevin White, UChicago b898b0b311dd3f834ca162f3d2e24c38 https://www.encodeproject.org/files/ENCFF084PWL/@@download/ENCFF084PWL.bigWig released s3://encode-public/2017/04/29/9f58f1cb-05dd-4282-b676-5c0672496936/ENCFF084PWL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF846FCW fastq fastq reads ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF908NQG/ 2764152251 Richard Myers, HAIB f7a9eccbba3ffddec44959327908265d SRA:SRR6213548 https://www.encodeproject.org/files/ENCFF846FCW/@@download/ENCFF846FCW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/4b8d0e88-8dbf-4a5f-bacc-d6615f7a2f45/ENCFF846FCW.fastq.gz ENCFF908NQG fastq fastq reads ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF846FCW/ 2820267624 Richard Myers, HAIB 679704535ffe84d423eff49d635771ff SRA:SRR6213548 https://www.encodeproject.org/files/ENCFF908NQG/@@download/ENCFF908NQG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/90544d9b-96ff-4e3d-ad91-7053b11b81da/ENCFF908NQG.fastq.gz ENCFF025AHN bam bam alignments hg19 ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF846FCW/, /files/ENCFF908NQG/, /files/ENCFF807MUK/ 4943915656 ENCODE Processing Pipeline a3132fed4a491f6ec4fe838d24e3d7b2 https://www.encodeproject.org/files/ENCFF025AHN/@@download/ENCFF025AHN.bam released s3://encode-public/2017/02/02/b29e1bc2-0d92-4ac4-8cc6-3a2209ec53de/ENCFF025AHN.bam ENCODE3 hg19 archived ENCFF554OXE bam bam unfiltered alignments hg19 ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF846FCW/, /files/ENCFF908NQG/, /files/ENCFF807MUK/ 6695929830 ENCODE Processing Pipeline 52f8abdbd6f4beda4c829f2e6cfb6acd https://www.encodeproject.org/files/ENCFF554OXE/@@download/ENCFF554OXE.bam released s3://encode-public/2017/02/02/abd8f1f7-483c-4ea5-8543-fbc9c65da973/ENCFF554OXE.bam ENCODE3 hg19 archived ENCFF077KNC bam bam unfiltered alignments GRCh38 ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF846FCW/, /files/ENCFF908NQG/, /files/ENCFF643CGH/ 6724116251 ENCODE Processing Pipeline be6c4df64d6129ba29f072a15fc5e1cf https://www.encodeproject.org/files/ENCFF077KNC/@@download/ENCFF077KNC.bam released s3://encode-public/2017/02/02/76bd15c4-f34d-4bc7-a97e-e678a00fe23d/ENCFF077KNC.bam ENCODE3 GRCh38 archived ENCFF359QFZ bam bam alignments GRCh38 ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF846FCW/, /files/ENCFF908NQG/, /files/ENCFF643CGH/ 4948464837 ENCODE Processing Pipeline 961d3dc5784d6f82ff4515aa562377e2 https://www.encodeproject.org/files/ENCFF359QFZ/@@download/ENCFF359QFZ.bam released s3://encode-public/2017/02/02/b1d94957-ae51-4d85-82ff-acafaa67948d/ENCFF359QFZ.bam ENCODE3 GRCh38 archived ENCFF885JBE bam bam unfiltered alignments GRCh38 ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF908NQG/, /files/ENCFF846FCW/, /files/ENCFF110MCL/ 6714121588 ENCODE Processing Pipeline ba91a183431ee9f394c22f76ad1348c7 https://www.encodeproject.org/files/ENCFF885JBE/@@download/ENCFF885JBE.bam released s3://encode-public/2020/10/28/c95f53d1-e686-477b-94f6-b020de7c390a/ENCFF885JBE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF018JPZ bam bam alignments GRCh38 ENCSR662VAE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF908NQG/, /files/ENCFF846FCW/, /files/ENCFF110MCL/ 4669356534 ENCODE Processing Pipeline 99fc3438cd3e032349e52ab039e0c6f8 https://www.encodeproject.org/files/ENCFF018JPZ/@@download/ENCFF018JPZ.bam released s3://encode-public/2020/10/28/1018f8e1-cb59-4ecd-94bc-a0b8a9766cd5/ENCFF018JPZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF831FWY tagAlign tagAlign alignments hg19 ENCSR479PXW Control ChIP-seq CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 63594561 Anshul Kundaje, Stanford 60ba689ddfaa01a24e7378536b09eb1e https://www.encodeproject.org/files/ENCFF831FWY/@@download/ENCFF831FWY.tagAlign.gz archived s3://encode-public/2016/02/11/57828eed-2eb0-4005-a609-e04cad482ea0/ENCFF831FWY.tagAlign.gz Lab custom hg19 archived extremely low read depth ENCFF181UCB bam bam redacted unfiltered alignments GRCh38 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF086YYO/, /files/ENCFF643CGH/ 65434098 ENCODE Processing Pipeline cf8567e0085b7fe8b3dca7a2e110658a https://www.encodeproject.org/files/ENCFF181UCB/@@download/ENCFF181UCB.bam released s3://encode-public/2018/01/31/c5aa0630-dce5-4ad1-b5c2-4d903ed36c6d/ENCFF181UCB.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF374KBE bam bam redacted unfiltered alignments hg19 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF781KAL/ 98751868 ENCODE Processing Pipeline 3a3be26d51788ad1369d90ed92885e53 https://www.encodeproject.org/files/ENCFF374KBE/@@download/ENCFF374KBE.bam released s3://encode-public/2018/01/31/915970a9-668b-45bb-a87a-33a59eca2295/ENCFF374KBE.bam ENCODE3 hg19 archived extremely low read depth ENCFF198BOB bam bam redacted unfiltered alignments hg19 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF086YYO/, /files/ENCFF807MUK/ 64859126 ENCODE Processing Pipeline 40660df321bba25db070a33d4934e395 https://www.encodeproject.org/files/ENCFF198BOB/@@download/ENCFF198BOB.bam released s3://encode-public/2018/01/31/3c15aa14-2779-45c5-aec8-d030de85d1e4/ENCFF198BOB.bam ENCODE3 hg19 archived extremely low read depth ENCFF932FPB bam bam redacted alignments GRCh38 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF086YYO/, /files/ENCFF643CGH/ 27737423 ENCODE Processing Pipeline 6b1025ee107cc5aa42244d7eff3cf1fd https://www.encodeproject.org/files/ENCFF932FPB/@@download/ENCFF932FPB.bam released s3://encode-public/2018/01/31/31b9e46c-1f8a-40e2-9f11-ea2970ce8c46/ENCFF932FPB.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF535NDM bam bam redacted alignments hg19 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF781KAL/ 72759021 ENCODE Processing Pipeline 36083b3365d8dcbde16b016d849ed5a8 https://www.encodeproject.org/files/ENCFF535NDM/@@download/ENCFF535NDM.bam released s3://encode-public/2018/01/31/1a4c6894-cf58-45f0-b10a-abf6dd5817e3/ENCFF535NDM.bam ENCODE3 hg19 archived extremely low read depth ENCFF561FHB bam bam redacted unfiltered alignments GRCh38 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF781KAL/ 99965479 ENCODE Processing Pipeline b0b1ed60b74472c2d9b4dfdc7a17583e https://www.encodeproject.org/files/ENCFF561FHB/@@download/ENCFF561FHB.bam released s3://encode-public/2018/01/31/4aa92ba5-845f-4449-8cba-1a9bbb583dcd/ENCFF561FHB.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF698OVI bam bam redacted alignments hg19 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF086YYO/, /files/ENCFF807MUK/ 27706453 ENCODE Processing Pipeline a9baa77dd11afdec3a494ef6cac8d38f https://www.encodeproject.org/files/ENCFF698OVI/@@download/ENCFF698OVI.bam released s3://encode-public/2018/01/31/5cff7d7a-8f17-43c4-90de-d0c5bebb43cf/ENCFF698OVI.bam ENCODE3 hg19 archived extremely low read depth ENCFF718PYY bam bam redacted alignments GRCh38 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF781KAL/ 72830983 ENCODE Processing Pipeline d727b9874611deca281b7c3edb7cafbd https://www.encodeproject.org/files/ENCFF718PYY/@@download/ENCFF718PYY.bam released s3://encode-public/2018/01/31/5b82286c-e3c9-4a05-afe4-72f1a25ea7f6/ENCFF718PYY.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF146ADS bam bam redacted alignments GRCh38 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF086YYO/ 151379575 ENCODE Processing Pipeline cb6270df7a91f81a3c6c80072dd7df62 https://www.encodeproject.org/files/ENCFF146ADS/@@download/ENCFF146ADS.bam released s3://encode-public/2021/01/27/f56ea687-10be-4404-9f2e-bffc53b1c433/ENCFF146ADS.bam ENCODE4 v1.7.0 GRCh38 released extremely low read depth ENCFF170YCB bam bam redacted alignments GRCh38 ENCSR479PXW Control ChIP-seq /human-donors/ENCDO266GKW/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF781KAL/ 327697234 ENCODE Processing Pipeline a7addf05a8b1ab6cd84309208a236d6d https://www.encodeproject.org/files/ENCFF170YCB/@@download/ENCFF170YCB.bam released s3://encode-public/2021/01/27/0eb44c73-ff66-4ca9-8d49-fe76ba28c175/ENCFF170YCB.bam ENCODE4 v1.7.0 GRCh38 released extremely low read depth ENCFF148HHP bam bam unfiltered alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF467EZO/, /files/ENCFF110MCL/ 1335394475 ENCODE Processing Pipeline 75a4f845f8574a18ca506b501ffc55a2 https://www.encodeproject.org/files/ENCFF148HHP/@@download/ENCFF148HHP.bam released s3://encode-public/2020/09/29/afb9c3e8-6932-49e3-b31a-9b4672ef263e/ENCFF148HHP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF232QRE bam bam unfiltered alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF582JMJ/ 1013496434 ENCODE Processing Pipeline 121fe8ae8d6f96457f9dbd755501da66 https://www.encodeproject.org/files/ENCFF232QRE/@@download/ENCFF232QRE.bam released s3://encode-public/2020/09/29/422fbde7-d5d9-4cd0-834b-015e23096aa1/ENCFF232QRE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF582JMJ fastq fastq reads ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 743914834 Tim Reddy, Duke 00ed21f86ebc720f5c411ee78c61cc68 SRA:SRR5129593 https://www.encodeproject.org/files/ENCFF582JMJ/@@download/ENCFF582JMJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/b925b598-4b28-40f6-8ad0-27b8fcdf5458/ENCFF582JMJ.fastq.gz ENCFF467EZO fastq fastq reads ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 994020935 Tim Reddy, Duke db18ee6b686a4682bf0f40c99c82931b SRA:SRR5129591 https://www.encodeproject.org/files/ENCFF467EZO/@@download/ENCFF467EZO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/e234746f-d110-49f4-ad2b-c2afe92d5618/ENCFF467EZO.fastq.gz ENCFF097YPD fastq fastq reads ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 960099747 Tim Reddy, Duke 3a8b1329756d04761496cf529aafd917 SRA:SRR5129592 https://www.encodeproject.org/files/ENCFF097YPD/@@download/ENCFF097YPD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/b1e6d0ac-3b56-4b59-8b82-f33ef881018b/ENCFF097YPD.fastq.gz ENCFF197RCJ bam bam alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF582JMJ/ 821151029 Tim Reddy, Duke 0cd8dba8acb195f321d55401d26cd602 https://www.encodeproject.org/files/ENCFF197RCJ/@@download/ENCFF197RCJ.bam released s3://encode-public/2016/12/15/e68d8982-e38c-4a8f-ad6e-e5c4505419aa/ENCFF197RCJ.bam Lab custom GRCh38 archived ENCFF694GJB bam bam alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF097YPD/ 1052136934 Tim Reddy, Duke e6e2f2cb16ca71139dfb2f54715ab217 https://www.encodeproject.org/files/ENCFF694GJB/@@download/ENCFF694GJB.bam released s3://encode-public/2016/12/15/a63aae02-e6e9-437a-a40d-bb311906ab5a/ENCFF694GJB.bam Lab custom GRCh38 archived ENCFF125KKU bam bam alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF467EZO/ 1073274408 Tim Reddy, Duke d94aa9d6df4faf01592a942f90b5cccd https://www.encodeproject.org/files/ENCFF125KKU/@@download/ENCFF125KKU.bam released s3://encode-public/2016/12/15/a4a01efd-4898-42a9-a347-50eadf3a232a/ENCFF125KKU.bam Lab custom GRCh38 archived ENCFF495ENC bam bam unfiltered alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF097YPD/, /files/ENCFF110MCL/ 1300466307 ENCODE Processing Pipeline cec87fa4dc38e502c44e8d57b166c5e1 https://www.encodeproject.org/files/ENCFF495ENC/@@download/ENCFF495ENC.bam released s3://encode-public/2020/09/29/d7d3b534-24b3-4c2a-b1ee-a8fac74094ec/ENCFF495ENC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF360LCI bam bam alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF097YPD/, /files/ENCFF110MCL/ 1109327759 ENCODE Processing Pipeline 7c5df34c46ba56875202cdf24638cab4 https://www.encodeproject.org/files/ENCFF360LCI/@@download/ENCFF360LCI.bam released s3://encode-public/2020/09/29/ffd4d78e-e08c-414e-b351-a242e03ec6d4/ENCFF360LCI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF460ROH bam bam alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF582JMJ/ 858742667 ENCODE Processing Pipeline 9c453d5623c5a577f8fc9867e1d78710 https://www.encodeproject.org/files/ENCFF460ROH/@@download/ENCFF460ROH.bam released s3://encode-public/2020/09/29/a8d7d692-7191-4f51-9dad-81583da97f36/ENCFF460ROH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF821YYV bam bam alignments GRCh38 ENCSR216DMN Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 0.5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF467EZO/, /files/ENCFF110MCL/ 1132461696 ENCODE Processing Pipeline 2dfeaf456c73fafb66df63242c62a0c7 https://www.encodeproject.org/files/ENCFF821YYV/@@download/ENCFF821YYV.bam released s3://encode-public/2020/09/29/45c57459-9705-45d8-9aca-d080ade07e23/ENCFF821YYV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF461TBX tagAlign tagAlign alignments hg19 ENCSR268LIX Control ChIP-seq /human-donors/ENCDO499UKB/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF989ZVZ/ 183068246 Anshul Kundaje, Stanford 768b74ca1aa2e776bb9eea96fcac7b0f https://www.encodeproject.org/files/ENCFF461TBX/@@download/ENCFF461TBX.tagAlign.gz archived s3://encode-public/2016/02/11/d685b401-1a1d-4018-baa1-75985bc07a6a/ENCFF461TBX.tagAlign.gz Lab custom hg19 archived low read length ENCFF032BQV bam bam redacted alignments GRCh38 ENCSR268LIX Control ChIP-seq /human-donors/ENCDO499UKB/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF989ZVZ/ 361724927 ENCODE Processing Pipeline a24fac2b4603b5bf17619192592fdcf2 https://www.encodeproject.org/files/ENCFF032BQV/@@download/ENCFF032BQV.bam released s3://encode-public/2018/01/18/de93e62f-3a92-4fc6-a1ef-d7a36a4a776c/ENCFF032BQV.bam ENCODE3 GRCh38 archived low read length ENCFF965FNI bam bam redacted unfiltered alignments GRCh38 ENCSR268LIX Control ChIP-seq /human-donors/ENCDO499UKB/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF989ZVZ/ 503916795 ENCODE Processing Pipeline b32e736173291cf2ce14253b15621528 https://www.encodeproject.org/files/ENCFF965FNI/@@download/ENCFF965FNI.bam released s3://encode-public/2018/01/18/85b64753-3620-4160-8dd1-1ff772f44748/ENCFF965FNI.bam ENCODE3 GRCh38 archived low read length ENCFF646LUQ bam bam redacted alignments hg19 ENCSR268LIX Control ChIP-seq /human-donors/ENCDO499UKB/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF989ZVZ/ 361669393 ENCODE Processing Pipeline 5bd9074eaad527b0966244cd9d0fdbb7 https://www.encodeproject.org/files/ENCFF646LUQ/@@download/ENCFF646LUQ.bam released s3://encode-public/2018/01/19/1b9e3354-3ccb-4cff-9f44-0c09f7827cc2/ENCFF646LUQ.bam ENCODE3 hg19 archived low read length ENCFF401ZVY bam bam redacted unfiltered alignments hg19 ENCSR268LIX Control ChIP-seq /human-donors/ENCDO499UKB/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF989ZVZ/ 497893248 ENCODE Processing Pipeline d7391df104f70f345599064585d2c92d https://www.encodeproject.org/files/ENCFF401ZVY/@@download/ENCFF401ZVY.bam released s3://encode-public/2018/01/19/c56ce677-41cf-4bc4-83e0-818c22e41985/ENCFF401ZVY.bam ENCODE3 hg19 archived low read length ENCFF251WBK bam bam redacted alignments GRCh38 ENCSR268LIX Control ChIP-seq /human-donors/ENCDO499UKB/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF989ZVZ/ 1073542272 ENCODE Processing Pipeline 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https://www.encodeproject.org/files/ENCFF260HFH/@@download/ENCFF260HFH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/89202b7b-cff1-4b24-ab49-c06e91fd2b4a/ENCFF260HFH.fastq.gz ENCFF270BJN bam bam unfiltered alignments hg19 ENCSR178MWD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF384OED/, /files/ENCFF985SAX/, /files/ENCFF260HFH/, /files/ENCFF364CZV/ 2944522629 ENCODE Processing Pipeline f0d06878fc59287ccb135127098ca311 https://www.encodeproject.org/files/ENCFF270BJN/@@download/ENCFF270BJN.bam released s3://encode-public/2016/10/27/3b6528f7-2cea-4f9d-bf92-d63b5ffbc5fc/ENCFF270BJN.bam ENCODE3 hg19 archived ENCFF184MWE bam bam unfiltered alignments GRCh38 ENCSR178MWD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF384OED/, /files/ENCFF985SAX/, /files/ENCFF260HFH/, /files/ENCFF643CGH/, /files/ENCFF364CZV/ 2952623851 ENCODE Processing Pipeline 33427f678ce209a31e83da45c486facd https://www.encodeproject.org/files/ENCFF184MWE/@@download/ENCFF184MWE.bam released s3://encode-public/2016/10/27/28fac56c-6047-40c5-a45d-f047107da3dc/ENCFF184MWE.bam ENCODE3 GRCh38 archived ENCFF956VTO bam bam alignments GRCh38 ENCSR178MWD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF384OED/, /files/ENCFF985SAX/, /files/ENCFF260HFH/, /files/ENCFF643CGH/, /files/ENCFF364CZV/ 2487750863 ENCODE Processing Pipeline 08b8c62944ea1268f3ece66b27d3d015 https://www.encodeproject.org/files/ENCFF956VTO/@@download/ENCFF956VTO.bam released s3://encode-public/2016/10/27/31269fea-0438-4bc2-9b58-0bcf21d34127/ENCFF956VTO.bam ENCODE3 GRCh38 archived ENCFF896CVY bam bam alignments hg19 ENCSR178MWD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF384OED/, /files/ENCFF985SAX/, /files/ENCFF260HFH/, /files/ENCFF364CZV/ 2484631112 ENCODE Processing Pipeline 46d304737fe6f0d9cabc271dd3f7bb8d https://www.encodeproject.org/files/ENCFF896CVY/@@download/ENCFF896CVY.bam released s3://encode-public/2016/10/27/1baa1336-4876-4b20-9309-530a882d7a85/ENCFF896CVY.bam ENCODE3 hg19 archived ENCFF848RUQ bam bam unfiltered alignments GRCh38 ENCSR178MWD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF384OED/, /files/ENCFF364CZV/, /files/ENCFF260HFH/, /files/ENCFF985SAX/ 2987517505 ENCODE Processing Pipeline 2b49e25aa34711f6db9e6cb40b7c15d9 https://www.encodeproject.org/files/ENCFF848RUQ/@@download/ENCFF848RUQ.bam released s3://encode-public/2020/08/20/8c00fc27-ac68-47ed-a669-80bb7b1fcfa5/ENCFF848RUQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF283DPL bam bam alignments GRCh38 ENCSR178MWD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF384OED/, /files/ENCFF364CZV/, /files/ENCFF260HFH/, /files/ENCFF985SAX/ 2546688359 ENCODE Processing Pipeline 5e3ad1fb88818ac23f2b03f5e9bcde93 https://www.encodeproject.org/files/ENCFF283DPL/@@download/ENCFF283DPL.bam released s3://encode-public/2020/08/20/0fe6ff97-420a-4e8a-831e-7200b8c1c91b/ENCFF283DPL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF114TVL fastq fastq reads ENCSR055XXE Control ChIP-seq /fly-donors/ENCDO374MYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34622/'], '@type': ['Target', 'Item'], 'name': 'CG6792-dmelanogaster', 'label': 'CG6792', '@id': '/targets/CG6792-dmelanogaster/', 'title': 'CG6792 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e39bf24d-a977-4228-96cb-40ca776e802c', 'status': 'released'} dm3 2L 12039952 12060953 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 424536952 Kevin White, UChicago a488d5ab40658e58f233f15824ef7e5a https://www.encodeproject.org/files/ENCFF114TVL/@@download/ENCFF114TVL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/176ce2bb-59ce-42d6-8394-5ab4d3ee0839/ENCFF114TVL.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF531OGA bam bam alignments dm3 ENCSR055XXE Control ChIP-seq /fly-donors/ENCDO374MYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34622/'], '@type': ['Target', 'Item'], 'name': 'CG6792-dmelanogaster', 'label': 'CG6792', '@id': '/targets/CG6792-dmelanogaster/', 'title': 'CG6792 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e39bf24d-a977-4228-96cb-40ca776e802c', 'status': 'released'} dm3 2L 12039952 12060953 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 47 /files/ENCFF059UHX/, /files/ENCFF114TVL/ 504976243 Kevin White, UChicago cf6096a1fa4210392a6fc5f985a44679 https://www.encodeproject.org/files/ENCFF531OGA/@@download/ENCFF531OGA.bam released s3://encode-public/2016/04/10/6dadf95a-c46e-47a2-b5ab-e52b3ffe4b78/ENCFF531OGA.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF434EXK bam bam alignments dm6 ENCSR055XXE Control ChIP-seq /fly-donors/ENCDO374MYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34622/'], '@type': ['Target', 'Item'], 'name': 'CG6792-dmelanogaster', 'label': 'CG6792', '@id': '/targets/CG6792-dmelanogaster/', 'title': 'CG6792 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e39bf24d-a977-4228-96cb-40ca776e802c', 'status': 'released'} dm3 2L 12039952 12060953 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF114TVL/ 512450779 Kevin White, UChicago c7cfe2a76864e99150024b90213939f4 https://www.encodeproject.org/files/ENCFF434EXK/@@download/ENCFF434EXK.bam released s3://encode-public/2016/04/22/0e7939b2-bb9a-4cb1-b8de-766b4c0ec19d/ENCFF434EXK.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF472MAY bigWig bigWig signal of unique reads dm6 ENCSR055XXE Control ChIP-seq /fly-donors/ENCDO374MYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34622/'], '@type': ['Target', 'Item'], 'name': 'CG6792-dmelanogaster', 'label': 'CG6792', '@id': '/targets/CG6792-dmelanogaster/', 'title': 'CG6792 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e39bf24d-a977-4228-96cb-40ca776e802c', 'status': 'released'} dm3 2L 12039952 12060953 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF434EXK/ 17183818 Kevin White, UChicago c19767959504d32ff32b013f3dde213b https://www.encodeproject.org/files/ENCFF472MAY/@@download/ENCFF472MAY.bigWig released s3://encode-public/2016/06/21/92a6825a-2a59-4910-a6ae-79b6f2073dfb/ENCFF472MAY.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF720XFB bigWig bigWig signal of unique reads dm3 ENCSR055XXE Control ChIP-seq /fly-donors/ENCDO374MYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34622/'], '@type': ['Target', 'Item'], 'name': 'CG6792-dmelanogaster', 'label': 'CG6792', '@id': '/targets/CG6792-dmelanogaster/', 'title': 'CG6792 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e39bf24d-a977-4228-96cb-40ca776e802c', 'status': 'released'} dm3 2L 12039952 12060953 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF531OGA/ 15088202 Kevin White, UChicago f65675fcd1c8f63d088eb945e545908b https://www.encodeproject.org/files/ENCFF720XFB/@@download/ENCFF720XFB.bigWig released s3://encode-public/2016/06/21/1e3aee51-199a-4b4b-841d-a8588e1001ed/ENCFF720XFB.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF811RNS bigWig bigWig read-depth normalized signal dm6 ENCSR055XXE Control ChIP-seq /fly-donors/ENCDO374MYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34622/'], '@type': ['Target', 'Item'], 'name': 'CG6792-dmelanogaster', 'label': 'CG6792', '@id': '/targets/CG6792-dmelanogaster/', 'title': 'CG6792 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e39bf24d-a977-4228-96cb-40ca776e802c', 'status': 'released'} dm3 2L 12039952 12060953 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF434EXK/ 17156177 Kevin White, UChicago d67d4a017918d99f967d830e29f5dae8 https://www.encodeproject.org/files/ENCFF811RNS/@@download/ENCFF811RNS.bigWig released s3://encode-public/2016/06/21/e21d3276-c488-46c0-b1ce-5ac9d08cb2c8/ENCFF811RNS.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF546PXT bigWig bigWig read-depth normalized signal dm3 ENCSR055XXE Control ChIP-seq /fly-donors/ENCDO374MYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34622/'], '@type': ['Target', 'Item'], 'name': 'CG6792-dmelanogaster', 'label': 'CG6792', '@id': '/targets/CG6792-dmelanogaster/', 'title': 'CG6792 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e39bf24d-a977-4228-96cb-40ca776e802c', 'status': 'released'} dm3 2L 12039952 12060953 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF531OGA/ 15078703 Kevin White, UChicago 70ce1a623d217c3b2af48bb71f20c262 https://www.encodeproject.org/files/ENCFF546PXT/@@download/ENCFF546PXT.bigWig released s3://encode-public/2016/06/21/6b719243-da31-419c-9a26-4123ee0e8a1a/ENCFF546PXT.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF872XMM fastq fastq reads ENCSR973END Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6304/'], '@type': ['Target', 'Item'], 'name': 'SATB1-human', 'label': 'SATB1', '@id': '/targets/SATB1-human/', 'title': 'SATB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b414ddf6-efd3-45ee-af32-1e3dd2ab620c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF471PBC/ 2858499570 Michael Snyder, Stanford f929a3ebf063a92e61b5508b49741333 SRA:SRR14850385 https://www.encodeproject.org/files/ENCFF872XMM/@@download/ENCFF872XMM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/eecb534c-8969-4776-be3e-71b006718a98/ENCFF872XMM.fastq.gz mild to moderate bottlenecking ENCFF471PBC fastq fastq reads ENCSR973END Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6304/'], '@type': ['Target', 'Item'], 'name': 'SATB1-human', 'label': 'SATB1', '@id': '/targets/SATB1-human/', 'title': 'SATB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b414ddf6-efd3-45ee-af32-1e3dd2ab620c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF872XMM/ 3068035174 Michael Snyder, Stanford a4b07ce9fa777654edf53b78fe145618 SRA:SRR14850385 https://www.encodeproject.org/files/ENCFF471PBC/@@download/ENCFF471PBC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/970e3d65-a652-4186-b5a0-84af99ac11e8/ENCFF471PBC.fastq.gz mild to moderate bottlenecking ENCFF045TWG bam bam unfiltered alignments GRCh38 ENCSR973END Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6304/'], '@type': ['Target', 'Item'], 'name': 'SATB1-human', 'label': 'SATB1', '@id': '/targets/SATB1-human/', 'title': 'SATB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b414ddf6-efd3-45ee-af32-1e3dd2ab620c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF872XMM/, /files/ENCFF471PBC/ 5571415311 ENCODE Processing Pipeline b3a22c0ee65b026ef2e2d702180dc20a https://www.encodeproject.org/files/ENCFF045TWG/@@download/ENCFF045TWG.bam released s3://encode-public/2020/04/20/84611c3e-2004-4932-898f-19c92e9d9506/ENCFF045TWG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF901AZO bam bam alignments GRCh38 ENCSR973END Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6304/'], '@type': ['Target', 'Item'], 'name': 'SATB1-human', 'label': 'SATB1', '@id': '/targets/SATB1-human/', 'title': 'SATB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b414ddf6-efd3-45ee-af32-1e3dd2ab620c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF872XMM/, /files/ENCFF471PBC/ 4109956684 ENCODE Processing Pipeline 1316d14aa70638cea07126e54a384867 https://www.encodeproject.org/files/ENCFF901AZO/@@download/ENCFF901AZO.bam released s3://encode-public/2020/04/20/5d2a1e04-300a-46f6-b1fb-982f28bdb92d/ENCFF901AZO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF906OUL fastq fastq reads ENCSR805VRS Control ChIP-seq /fly-donors/ENCDO910FVG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35168/'], '@type': ['Target', 'Item'], 'name': 'Side-dmelanogaster', 'label': 'Side', '@id': '/targets/Side-dmelanogaster/', 'title': 'Side (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '654f9f3f-0dde-448d-8f98-719ca0112915', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 796060624 Kevin White, UChicago 10dd2412ea97810cabcd336f351f0acb https://www.encodeproject.org/files/ENCFF906OUL/@@download/ENCFF906OUL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/7f96dce8-1a5b-4d8b-ba32-07e30ea51025/ENCFF906OUL.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF917GTS bam bam alignments dm3 ENCSR805VRS Control ChIP-seq /fly-donors/ENCDO910FVG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35168/'], '@type': ['Target', 'Item'], 'name': 'Side-dmelanogaster', 'label': 'Side', '@id': '/targets/Side-dmelanogaster/', 'title': 'Side (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '654f9f3f-0dde-448d-8f98-719ca0112915', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF906OUL/ 1175180359 Kevin White, UChicago c5f6cf571109706804922034d2be86f2 https://www.encodeproject.org/files/ENCFF917GTS/@@download/ENCFF917GTS.bam released s3://encode-public/2015/08/03/bb43b655-8fa3-4784-9f56-ce0b46ac6f07/ENCFF917GTS.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF232RAM bigWig bigWig signal of unique reads dm3 ENCSR805VRS Control ChIP-seq /fly-donors/ENCDO910FVG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35168/'], '@type': ['Target', 'Item'], 'name': 'Side-dmelanogaster', 'label': 'Side', '@id': '/targets/Side-dmelanogaster/', 'title': 'Side (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '654f9f3f-0dde-448d-8f98-719ca0112915', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF917GTS/ 15507159 Kevin White, UChicago 91be98a83f65c13d2a80b4d79d991c87 https://www.encodeproject.org/files/ENCFF232RAM/@@download/ENCFF232RAM.bigWig released s3://encode-public/2015/10/06/f205a5d9-c1e8-42f8-b5c0-ed0db1f3f12d/ENCFF232RAM.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF898GMX bigWig bigWig read-depth normalized signal dm3 ENCSR805VRS Control ChIP-seq /fly-donors/ENCDO910FVG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35168/'], '@type': ['Target', 'Item'], 'name': 'Side-dmelanogaster', 'label': 'Side', '@id': '/targets/Side-dmelanogaster/', 'title': 'Side (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '654f9f3f-0dde-448d-8f98-719ca0112915', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF917GTS/ 15524176 Kevin White, UChicago 5dc6bd21ea69192d3ddc6f1d33cb422c https://www.encodeproject.org/files/ENCFF898GMX/@@download/ENCFF898GMX.bigWig released s3://encode-public/2015/10/06/593c2501-59f6-4a05-a07d-99824eb568e0/ENCFF898GMX.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF819PPQ bam bam alignments dm6 ENCSR805VRS Control ChIP-seq /fly-donors/ENCDO910FVG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35168/'], '@type': ['Target', 'Item'], 'name': 'Side-dmelanogaster', 'label': 'Side', '@id': '/targets/Side-dmelanogaster/', 'title': 'Side (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '654f9f3f-0dde-448d-8f98-719ca0112915', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF906OUL/ 1168811595 Kevin White, UChicago 85028ac9c4ca7819536db279f0170b32 https://www.encodeproject.org/files/ENCFF819PPQ/@@download/ENCFF819PPQ.bam released s3://encode-public/2016/04/22/ac7f4a32-be87-4297-bf68-83830373d61a/ENCFF819PPQ.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF439QBK bigWig bigWig signal of unique reads dm6 ENCSR805VRS Control ChIP-seq /fly-donors/ENCDO910FVG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35168/'], '@type': ['Target', 'Item'], 'name': 'Side-dmelanogaster', 'label': 'Side', '@id': '/targets/Side-dmelanogaster/', 'title': 'Side (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '654f9f3f-0dde-448d-8f98-719ca0112915', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF819PPQ/ 17533588 Kevin White, UChicago fb1faeec9776c2f74f83d87928b2c02f https://www.encodeproject.org/files/ENCFF439QBK/@@download/ENCFF439QBK.bigWig released s3://encode-public/2016/06/21/8c73791f-a842-4f21-8d28-52d8c34bd644/ENCFF439QBK.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF579ZIZ bigWig bigWig read-depth normalized signal dm6 ENCSR805VRS Control ChIP-seq /fly-donors/ENCDO910FVG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35168/'], '@type': ['Target', 'Item'], 'name': 'Side-dmelanogaster', 'label': 'Side', '@id': '/targets/Side-dmelanogaster/', 'title': 'Side (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '654f9f3f-0dde-448d-8f98-719ca0112915', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF819PPQ/ 17566333 Kevin White, UChicago bc1af5af8a280db22658d5bd0c77d68d https://www.encodeproject.org/files/ENCFF579ZIZ/@@download/ENCFF579ZIZ.bigWig released s3://encode-public/2016/06/21/f991f16f-a7ce-4624-b778-9f50fa3f5f77/ENCFF579ZIZ.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF053BKB fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 849268342 Bradley Bernstein, Broad 13e833e9290862c0926fffc378c5b85f SRA:SRR5833125 https://www.encodeproject.org/files/ENCFF053BKB/@@download/ENCFF053BKB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/5f0931a2-a111-4f25-aac6-b402f975482b/ENCFF053BKB.fastq.gz inconsistent platforms ENCFF361CSC fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 816972854 Bradley Bernstein, Broad 8a371d6748fa7bf16d4ba9521c5ccadc SRA:SRR5833126 https://www.encodeproject.org/files/ENCFF361CSC/@@download/ENCFF361CSC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/72cfe5fa-7179-47d3-8609-d1cb73b62d76/ENCFF361CSC.fastq.gz inconsistent platforms ENCFF825KUP fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1243935063 Bradley Bernstein, Broad 05dbd1b00f27172c655953dd26c8df75 SRA:SRR5833123 https://www.encodeproject.org/files/ENCFF825KUP/@@download/ENCFF825KUP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/a258d7a7-a383-497a-9fcd-1876f1937e7a/ENCFF825KUP.fastq.gz inconsistent platforms ENCFF378JTU fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1213932597 Bradley Bernstein, Broad 3200ec6e9702b7524a4073a46d6c6e7a SRA:SRR5833124 https://www.encodeproject.org/files/ENCFF378JTU/@@download/ENCFF378JTU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/2a542d6a-9ab9-4421-b190-f128fa96f432/ENCFF378JTU.fastq.gz inconsistent platforms ENCFF125CBC bam bam unfiltered alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF378JTU/, /files/ENCFF643CGH/, /files/ENCFF361CSC/, /files/ENCFF825KUP/, /files/ENCFF053BKB/ 4019583470 ENCODE Processing Pipeline cd44fc5b59adb34aff790f76069ace4b https://www.encodeproject.org/files/ENCFF125CBC/@@download/ENCFF125CBC.bam released s3://encode-public/2016/10/27/4e0abd1c-2a35-4542-92bf-52650483ea1f/ENCFF125CBC.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF716OTH bam bam unfiltered alignments hg19 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF378JTU/, /files/ENCFF807MUK/, /files/ENCFF361CSC/, /files/ENCFF825KUP/, /files/ENCFF053BKB/ 4007306457 ENCODE Processing Pipeline 7b9cd14aa2c2dfc43a66a359f81593d0 https://www.encodeproject.org/files/ENCFF716OTH/@@download/ENCFF716OTH.bam released s3://encode-public/2016/10/27/ee1f6169-709e-48fe-939f-09e6f7764a7a/ENCFF716OTH.bam ENCODE3 hg19 archived inconsistent platforms ENCFF665FWN bam bam alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF378JTU/, /files/ENCFF643CGH/, /files/ENCFF361CSC/, /files/ENCFF825KUP/, /files/ENCFF053BKB/ 3376186312 ENCODE Processing Pipeline 5919588f24eeec4e428d481115f60d3e https://www.encodeproject.org/files/ENCFF665FWN/@@download/ENCFF665FWN.bam released s3://encode-public/2016/10/27/28b0a7bc-1d7f-4c5e-b153-409c75dfdaec/ENCFF665FWN.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF788LJE bam bam alignments hg19 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF378JTU/, /files/ENCFF807MUK/, /files/ENCFF361CSC/, /files/ENCFF825KUP/, /files/ENCFF053BKB/ 3371632608 ENCODE Processing Pipeline 6e39bc71313d09695fc13deb1c427510 https://www.encodeproject.org/files/ENCFF788LJE/@@download/ENCFF788LJE.bam released s3://encode-public/2016/10/27/ad33d59a-29f5-4aa7-96f5-425a6d254a3f/ENCFF788LJE.bam ENCODE3 hg19 archived inconsistent platforms ENCFF555ELI fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 354810057 Bradley Bernstein, Broad 46ed23dec14a71d0497e768985d6d89e https://www.encodeproject.org/files/ENCFF555ELI/@@download/ENCFF555ELI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/43ae4044-91d9-45dd-a2d3-78605baf8093/ENCFF555ELI.fastq.gz inconsistent platforms ENCFF909SES fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 365593018 Bradley Bernstein, Broad 3eee35134a7c8e08eae4041403984611 https://www.encodeproject.org/files/ENCFF909SES/@@download/ENCFF909SES.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/a86933d7-586c-4743-a6d4-8b4390d83aee/ENCFF909SES.fastq.gz inconsistent platforms ENCFF429TLP fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 354610219 Bradley Bernstein, Broad 6c30ffb02059e99676fb4c8bad1e18c8 https://www.encodeproject.org/files/ENCFF429TLP/@@download/ENCFF429TLP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/67b2683c-dc60-4897-a015-a3da505634d4/ENCFF429TLP.fastq.gz inconsistent platforms ENCFF155AZY fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 356199254 Bradley Bernstein, Broad cefb2019316af9e47cafa1bd045b185b https://www.encodeproject.org/files/ENCFF155AZY/@@download/ENCFF155AZY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/5e5ded96-3346-4f8d-8936-13f1d8b6e71b/ENCFF155AZY.fastq.gz inconsistent platforms ENCFF272GAJ bam bam unfiltered alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF643CGH/, /files/ENCFF871OKS/, /files/ENCFF555ELI/, /files/ENCFF909SES/, /files/ENCFF250PSZ/, /files/ENCFF155AZY/, /files/ENCFF429TLP/, /files/ENCFF024ABR/, /files/ENCFF268VFB/ 2928933418 ENCODE Processing Pipeline 4b069fb53b7ee55982a1b3e69bbdd626 https://www.encodeproject.org/files/ENCFF272GAJ/@@download/ENCFF272GAJ.bam released s3://encode-public/2019/08/30/e2791811-8752-4127-92cd-88b3b380a0cc/ENCFF272GAJ.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF702QST bam bam unfiltered alignments hg19 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF871OKS/, /files/ENCFF807MUK/, /files/ENCFF555ELI/, /files/ENCFF909SES/, /files/ENCFF250PSZ/, /files/ENCFF155AZY/, /files/ENCFF429TLP/, /files/ENCFF024ABR/, /files/ENCFF268VFB/ 2918024210 ENCODE Processing Pipeline 7cf8101afbc6e06b40f8969f57d17559 https://www.encodeproject.org/files/ENCFF702QST/@@download/ENCFF702QST.bam released s3://encode-public/2019/08/30/093a6c6c-539b-4f88-b95a-50187dd5b7fe/ENCFF702QST.bam ENCODE3 hg19 archived inconsistent platforms ENCFF977YIW bam bam alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF643CGH/, /files/ENCFF871OKS/, /files/ENCFF555ELI/, /files/ENCFF909SES/, /files/ENCFF250PSZ/, /files/ENCFF155AZY/, /files/ENCFF429TLP/, /files/ENCFF024ABR/, /files/ENCFF268VFB/ 2474568758 ENCODE Processing Pipeline 926af039a515bf5a1c088c0c756e2e56 https://www.encodeproject.org/files/ENCFF977YIW/@@download/ENCFF977YIW.bam released s3://encode-public/2019/08/30/4db6d1e8-b954-457e-9d75-c65771d2bb85/ENCFF977YIW.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF919ZSQ bam bam alignments hg19 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF871OKS/, /files/ENCFF807MUK/, /files/ENCFF555ELI/, /files/ENCFF909SES/, /files/ENCFF250PSZ/, /files/ENCFF155AZY/, /files/ENCFF429TLP/, /files/ENCFF024ABR/, /files/ENCFF268VFB/ 2471563010 ENCODE Processing Pipeline c9afe316505acd996ba04fd9e8883acd https://www.encodeproject.org/files/ENCFF919ZSQ/@@download/ENCFF919ZSQ.bam released s3://encode-public/2019/08/30/5e1c2d05-4b1d-43ad-a334-dca4bed021e0/ENCFF919ZSQ.bam ENCODE3 hg19 archived inconsistent platforms ENCFF871OKS fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 228172571 Bradley Bernstein, Broad a188b529a876bd3eb09fab4ce0237874 https://www.encodeproject.org/files/ENCFF871OKS/@@download/ENCFF871OKS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/2b90f0b1-877d-4987-b494-dfefa3b0940d/ENCFF871OKS.fastq.gz inconsistent platforms ENCFF268VFB fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 161093304 Bradley Bernstein, Broad 6feffcaa33ed43fcd83c0a2572d7967b https://www.encodeproject.org/files/ENCFF268VFB/@@download/ENCFF268VFB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/d1bca2ea-b0e4-4880-aa36-34f93282896a/ENCFF268VFB.fastq.gz inconsistent platforms ENCFF250PSZ fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 556150498 Bradley Bernstein, Broad 31eb9f396e0407c0508ee0befaf89278 https://www.encodeproject.org/files/ENCFF250PSZ/@@download/ENCFF250PSZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/d3957c15-a62c-4f03-bf13-539f7922f884/ENCFF250PSZ.fastq.gz inconsistent platforms ENCFF024ABR fastq fastq reads ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_2 76 single-ended 510181614 Bradley Bernstein, Broad c7c1ada5faca0ab4acdcbaa898100661 https://www.encodeproject.org/files/ENCFF024ABR/@@download/ENCFF024ABR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/04225c66-7188-4cb2-a2f9-f52b94987a5b/ENCFF024ABR.fastq.gz inconsistent platforms ENCFF829XWE bam bam unfiltered alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF871OKS/, /files/ENCFF250PSZ/, /files/ENCFF110MCL/, /files/ENCFF024ABR/, /files/ENCFF155AZY/, /files/ENCFF429TLP/, /files/ENCFF909SES/, /files/ENCFF268VFB/, /files/ENCFF555ELI/ 2923463215 ENCODE Processing Pipeline ac57bdf5952e11107952d974f47ea17b https://www.encodeproject.org/files/ENCFF829XWE/@@download/ENCFF829XWE.bam released s3://encode-public/2020/08/20/336bf1f3-b403-48bc-80a8-9f889ea0e0cf/ENCFF829XWE.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF527TRV bam bam unfiltered alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF378JTU/, /files/ENCFF825KUP/, /files/ENCFF361CSC/, /files/ENCFF053BKB/ 4071239154 ENCODE Processing Pipeline a067a285ed5bdd7faaa0f266f5236663 https://www.encodeproject.org/files/ENCFF527TRV/@@download/ENCFF527TRV.bam released s3://encode-public/2020/08/20/61981d61-a661-481b-b2ee-61244634883e/ENCFF527TRV.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF607IHR bam bam alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF378JTU/, /files/ENCFF825KUP/, /files/ENCFF361CSC/, /files/ENCFF053BKB/ 3453225435 ENCODE Processing Pipeline c2f15b3bc37d3255502af43cc8085389 https://www.encodeproject.org/files/ENCFF607IHR/@@download/ENCFF607IHR.bam released s3://encode-public/2020/08/20/84df25ef-4882-4b4f-9972-22acdd197ea2/ENCFF607IHR.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF554HMI bam bam alignments GRCh38 ENCSR828XQV Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF871OKS/, /files/ENCFF250PSZ/, /files/ENCFF110MCL/, /files/ENCFF024ABR/, /files/ENCFF155AZY/, /files/ENCFF429TLP/, /files/ENCFF909SES/, /files/ENCFF268VFB/, /files/ENCFF555ELI/ 2487265440 ENCODE Processing Pipeline 81e962e4129984fa44b5eca0f49d93d3 https://www.encodeproject.org/files/ENCFF554HMI/@@download/ENCFF554HMI.bam released s3://encode-public/2020/08/20/0ffd1fd0-2b29-4458-aaf5-4f2513902634/ENCFF554HMI.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF958PMS bam bam unfiltered alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF419BSA/, /files/ENCFF683BRZ/ 7155878875 ENCODE Processing Pipeline c5abbf2819c6cf497ffebede93bc5495 https://www.encodeproject.org/files/ENCFF958PMS/@@download/ENCFF958PMS.bam released s3://encode-public/2020/09/29/60926a36-98e6-4107-bb64-9c34cdffc0b8/ENCFF958PMS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF422JGR bam bam alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF337YMF/, /files/ENCFF025UZU/ 4902648740 ENCODE Processing Pipeline cf5a05cd155bceb59ae6f373c1096ef9 https://www.encodeproject.org/files/ENCFF422JGR/@@download/ENCFF422JGR.bam released s3://encode-public/2020/09/29/27442118-6fbd-4358-853a-896d300bbee9/ENCFF422JGR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF337YMF fastq fastq reads ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 1 /files/ENCFF025UZU/ 3321711229 Michael Snyder, Stanford 586967f7ddfc1fc4f1cb3aceb50b0330 SRA:SRR14638907 https://www.encodeproject.org/files/ENCFF337YMF/@@download/ENCFF337YMF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/4eece2e3-fd3e-4323-962b-633677ca0ace/ENCFF337YMF.fastq.gz ENCFF025UZU fastq fastq reads ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 2 /files/ENCFF337YMF/ 3516003449 Michael Snyder, Stanford 7c959b3ddd22aed6af5e2dc0d1889c22 SRA:SRR14638907 https://www.encodeproject.org/files/ENCFF025UZU/@@download/ENCFF025UZU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/8796074d-69eb-411b-bab7-d227bbc3f8b0/ENCFF025UZU.fastq.gz ENCFF683BRZ fastq fastq reads ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 1 /files/ENCFF419BSA/ 3577950222 Michael Snyder, Stanford d8d22e8c89138000b9301cbb01f2caf5 SRA:SRR14638908 https://www.encodeproject.org/files/ENCFF683BRZ/@@download/ENCFF683BRZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/75ccf506-9dea-40e8-8660-aab649f16d3a/ENCFF683BRZ.fastq.gz ENCFF419BSA fastq fastq reads ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 2 /files/ENCFF683BRZ/ 3824568090 Michael Snyder, Stanford 090cc588f7e9b8ae9f2696f84b52db02 SRA:SRR14638908 https://www.encodeproject.org/files/ENCFF419BSA/@@download/ENCFF419BSA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/48b68dc8-37c6-460b-86d8-72518987548a/ENCFF419BSA.fastq.gz ENCFF475ANU bam bam alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF337YMF/, /files/ENCFF025UZU/, /files/ENCFF643CGH/ 4898558931 ENCODE Processing Pipeline 98562236d6f3af8659e2d4904034ac63 https://www.encodeproject.org/files/ENCFF475ANU/@@download/ENCFF475ANU.bam released s3://encode-public/2017/01/08/29003d1c-ee9f-47f9-9ab8-c6e972d24e0e/ENCFF475ANU.bam ENCODE3 GRCh38 archived ENCFF003QKA bam bam unfiltered alignments hg19 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF337YMF/, /files/ENCFF025UZU/, /files/ENCFF807MUK/ 6447931509 ENCODE Processing Pipeline d2a479332e25f14890edb9df75dc0bb1 https://www.encodeproject.org/files/ENCFF003QKA/@@download/ENCFF003QKA.bam released s3://encode-public/2017/01/08/42f4c01d-3a7d-4f9c-a424-34f2da148a9c/ENCFF003QKA.bam ENCODE3 hg19 archived ENCFF475WZW bam bam alignments hg19 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF337YMF/, /files/ENCFF025UZU/, /files/ENCFF807MUK/ 4889524407 ENCODE Processing Pipeline 4687ff35304d435ffc94780ff2b6ec9b https://www.encodeproject.org/files/ENCFF475WZW/@@download/ENCFF475WZW.bam released s3://encode-public/2017/01/08/a9ece07b-a9a2-4aad-ba40-ed4854842676/ENCFF475WZW.bam ENCODE3 hg19 archived ENCFF106ZVJ bam bam unfiltered alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF683BRZ/, /files/ENCFF643CGH/, /files/ENCFF419BSA/ 7062129579 ENCODE Processing Pipeline 53e197b6c8316e6a5cb3991adbd963b3 https://www.encodeproject.org/files/ENCFF106ZVJ/@@download/ENCFF106ZVJ.bam released s3://encode-public/2017/01/08/bb1dd3c1-cb62-48d3-840e-9a6f3e30d5ba/ENCFF106ZVJ.bam ENCODE3 GRCh38 archived ENCFF552DZD bam bam unfiltered alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF337YMF/, /files/ENCFF025UZU/, /files/ENCFF643CGH/ 6458959475 ENCODE Processing Pipeline 0c2f25d2dcb33d81ca5ae98a02f5825d https://www.encodeproject.org/files/ENCFF552DZD/@@download/ENCFF552DZD.bam released s3://encode-public/2017/01/08/fc4f4372-b205-4c31-be3c-0c171b52bf70/ENCFF552DZD.bam ENCODE3 GRCh38 archived ENCFF304BGC bam bam alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF683BRZ/, /files/ENCFF643CGH/, /files/ENCFF419BSA/ 5634394859 ENCODE Processing Pipeline 517f48ba81b3db2e64ab04d01ab3d68a https://www.encodeproject.org/files/ENCFF304BGC/@@download/ENCFF304BGC.bam released s3://encode-public/2017/01/08/6405b61e-1396-46d0-8620-741371f78e6d/ENCFF304BGC.bam ENCODE3 GRCh38 archived ENCFF093ABS bam bam unfiltered alignments hg19 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF683BRZ/, /files/ENCFF807MUK/, /files/ENCFF419BSA/ 7048563316 ENCODE Processing Pipeline 796e53c9cc7cc2cfa9e3ea629fe09a3d https://www.encodeproject.org/files/ENCFF093ABS/@@download/ENCFF093ABS.bam released s3://encode-public/2017/01/10/4263c795-7f8f-4b82-9cfa-65c7a2bb788e/ENCFF093ABS.bam ENCODE3 hg19 archived ENCFF475BTD bam bam alignments hg19 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF683BRZ/, /files/ENCFF807MUK/, /files/ENCFF419BSA/ 5625461053 ENCODE Processing Pipeline 39f4b4e30535ab4565ca114bd059dc53 https://www.encodeproject.org/files/ENCFF475BTD/@@download/ENCFF475BTD.bam released s3://encode-public/2017/01/10/dbf33d23-973d-4d8c-ba27-c1798e2f133f/ENCFF475BTD.bam ENCODE3 hg19 archived ENCFF993SRC bam bam unfiltered alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF337YMF/, /files/ENCFF025UZU/ 6547488916 ENCODE Processing Pipeline 68081aa27600dd1a4c607112d893ec4e https://www.encodeproject.org/files/ENCFF993SRC/@@download/ENCFF993SRC.bam released s3://encode-public/2020/09/29/9d6a8c8a-62fb-4a09-abbd-e9588931bc4f/ENCFF993SRC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF532CTP bam bam alignments GRCh38 ENCSR488AHQ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF419BSA/, /files/ENCFF683BRZ/ 5623376307 ENCODE Processing Pipeline 3b544d98e25697f609c125fa40ee07e5 https://www.encodeproject.org/files/ENCFF532CTP/@@download/ENCFF532CTP.bam released s3://encode-public/2020/09/29/95225dc8-9496-4be6-a006-51d571f1131a/ENCFF532CTP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF154YCF fastq fastq reads ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 654156215 Bradley Bernstein, Broad 46e51fa509d610ec49e95697ae890842 SRA:SRR5331545 https://www.encodeproject.org/files/ENCFF154YCF/@@download/ENCFF154YCF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/3cad1c17-5538-4a1e-844d-af505ce5271d/ENCFF154YCF.fastq.gz ENCFF351BDB fastq fastq reads ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 640455584 Bradley Bernstein, Broad 4dc3208e7d4824b755e16dbf76596e94 SRA:SRR5331546 https://www.encodeproject.org/files/ENCFF351BDB/@@download/ENCFF351BDB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/b9b2eadc-5ac2-42d0-b0a1-c61ccecb08ca/ENCFF351BDB.fastq.gz ENCFF996WJG fastq fastq reads ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 779230595 Bradley Bernstein, Broad 9b8b8a6a272b46fa565c75e8760e20a3 SRA:SRR5331547 https://www.encodeproject.org/files/ENCFF996WJG/@@download/ENCFF996WJG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/be67a16f-b453-4473-92ea-8c5df1243ffa/ENCFF996WJG.fastq.gz ENCFF614ETM fastq fastq reads ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 775771855 Bradley Bernstein, Broad 4e44c9faa5088958ef27fc1284b5e4d4 SRA:SRR5331548 https://www.encodeproject.org/files/ENCFF614ETM/@@download/ENCFF614ETM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/24d6226c-4197-45e8-b3d0-1ebaf7bb2cd7/ENCFF614ETM.fastq.gz ENCFF599PYA bam bam unfiltered alignments GRCh38 ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF351BDB/, /files/ENCFF643CGH/, /files/ENCFF614ETM/, /files/ENCFF996WJG/, /files/ENCFF154YCF/ 2765336612 ENCODE 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/files/ENCFF351BDB/, /files/ENCFF807MUK/, /files/ENCFF614ETM/, /files/ENCFF996WJG/, /files/ENCFF154YCF/ 2757472951 ENCODE Processing Pipeline a08ae0f266bde8d85bcf43a1c7f7c1a7 https://www.encodeproject.org/files/ENCFF506NZY/@@download/ENCFF506NZY.bam released s3://encode-public/2016/10/27/614be5f0-8dc4-4228-998c-fb6b3a3ac65f/ENCFF506NZY.bam ENCODE3 hg19 archived ENCFF534JPQ bam bam alignments hg19 ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF351BDB/, /files/ENCFF807MUK/, /files/ENCFF614ETM/, /files/ENCFF996WJG/, /files/ENCFF154YCF/ 2330382628 ENCODE Processing Pipeline df80df3b7115388a2bfec6b9eb230cd8 https://www.encodeproject.org/files/ENCFF534JPQ/@@download/ENCFF534JPQ.bam released s3://encode-public/2016/10/27/772e7954-8d46-4318-96dd-6177dfe50312/ENCFF534JPQ.bam ENCODE3 hg19 archived ENCFF471WXG bam bam alignments GRCh38 ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF351BDB/, /files/ENCFF996WJG/, /files/ENCFF110MCL/, /files/ENCFF614ETM/, /files/ENCFF154YCF/ 2389790566 ENCODE Processing Pipeline cce3dff34c4ca84306d2f1a1cf2e7afd https://www.encodeproject.org/files/ENCFF471WXG/@@download/ENCFF471WXG.bam released s3://encode-public/2020/08/20/9bf8453b-b2d5-4b31-a45b-a95b34ca3e39/ENCFF471WXG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF137JRA bam bam unfiltered alignments GRCh38 ENCSR276SJT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF351BDB/, /files/ENCFF996WJG/, /files/ENCFF110MCL/, /files/ENCFF614ETM/, /files/ENCFF154YCF/ 2795770537 ENCODE Processing Pipeline 848a06e60904e0c5af885597d4c821a6 https://www.encodeproject.org/files/ENCFF137JRA/@@download/ENCFF137JRA.bam released s3://encode-public/2020/08/20/abaca5b5-2f16-4e22-bfa9-9eef01e84885/ENCFF137JRA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF730GSI fastq fastq reads ENCSR382YXI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3215/'], '@type': ['Target', 'Item'], 'name': 'HOXB5-human', 'label': 'HOXB5', '@id': '/targets/HOXB5-human/', 'title': 'HOXB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8d8e6f0c-2ab3-4446-8a27-f7270ca69ad7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF945OTH/ 2153409960 Michael Snyder, Stanford eb2aefd12745d2888b4c3d30816c2d58 SRA:SRR14107085 https://www.encodeproject.org/files/ENCFF730GSI/@@download/ENCFF730GSI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/a05621ff-281d-45b0-8b34-69af6746811c/ENCFF730GSI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF945OTH fastq fastq reads ENCSR382YXI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3215/'], '@type': ['Target', 'Item'], 'name': 'HOXB5-human', 'label': 'HOXB5', '@id': '/targets/HOXB5-human/', 'title': 'HOXB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8d8e6f0c-2ab3-4446-8a27-f7270ca69ad7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF730GSI/ 1947053509 Michael Snyder, Stanford b69f1e838226c0c8ec14f54e77cbec7a SRA:SRR14107085 https://www.encodeproject.org/files/ENCFF945OTH/@@download/ENCFF945OTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7a0f46a8-4bac-4687-bab7-35714c687c8a/ENCFF945OTH.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF425QMC bam bam alignments GRCh38 ENCSR382YXI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3215/'], '@type': ['Target', 'Item'], 'name': 'HOXB5-human', 'label': 'HOXB5', '@id': '/targets/HOXB5-human/', 'title': 'HOXB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8d8e6f0c-2ab3-4446-8a27-f7270ca69ad7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF945OTH/, /files/ENCFF730GSI/ 2839704120 ENCODE Processing Pipeline aca7a6bd87e02205564c4881d1af943c https://www.encodeproject.org/files/ENCFF425QMC/@@download/ENCFF425QMC.bam released s3://encode-public/2020/04/20/3388f704-13fb-46a0-99e6-34f63679198b/ENCFF425QMC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF918IVN bam bam unfiltered alignments GRCh38 ENCSR382YXI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3215/'], '@type': ['Target', 'Item'], 'name': 'HOXB5-human', 'label': 'HOXB5', '@id': '/targets/HOXB5-human/', 'title': 'HOXB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8d8e6f0c-2ab3-4446-8a27-f7270ca69ad7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF945OTH/, /files/ENCFF730GSI/ 3847383842 ENCODE Processing Pipeline d4b21df5afbdd53d24af8f2ab81ec253 https://www.encodeproject.org/files/ENCFF918IVN/@@download/ENCFF918IVN.bam released s3://encode-public/2020/04/20/3df8b172-659b-4cf8-be54-045b88f3a88f/ENCFF918IVN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF047UOM fastq fastq reads ENCSR074DEG Control ChIP-seq /fly-donors/ENCDO422AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38757/'], '@type': ['Target', 'Item'], 'name': 'CG9948-dmelanogaster', 'label': 'CG9948', '@id': '/targets/CG9948-dmelanogaster/', 'title': 'CG9948 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '64bc15af-9274-4a77-8e44-5eff2736768f', 'status': 'released'} dm3 3L 6946786 6966482 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1216601463 Kevin White, UChicago ad8ad538cd801b95aa3df79eb14bcde9 https://www.encodeproject.org/files/ENCFF047UOM/@@download/ENCFF047UOM.fastq.gz Illumina HiSeq 4000 /files/ENCFF557TCC/ released s3://encode-public/2018/09/18/88321cf5-8a54-4978-9acb-369470dda8c4/ENCFF047UOM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF680FBR bam bam alignments dm6 ENCSR074DEG Control ChIP-seq /fly-donors/ENCDO422AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38757/'], '@type': ['Target', 'Item'], 'name': 'CG9948-dmelanogaster', 'label': 'CG9948', '@id': '/targets/CG9948-dmelanogaster/', 'title': 'CG9948 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '64bc15af-9274-4a77-8e44-5eff2736768f', 'status': 'released'} dm3 3L 6946786 6966482 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF047UOM/, /files/ENCFF479RCH/ 1640459284 Kevin White, UChicago a6e043a9eb9eb3dccafe0cca47f27855 https://www.encodeproject.org/files/ENCFF680FBR/@@download/ENCFF680FBR.bam released s3://encode-public/2018/09/19/2b2ad617-172a-4b4a-8469-26fc8cc7b24e/ENCFF680FBR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF510FIW bigWig bigWig signal of unique reads dm6 ENCSR074DEG Control ChIP-seq /fly-donors/ENCDO422AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38757/'], '@type': ['Target', 'Item'], 'name': 'CG9948-dmelanogaster', 'label': 'CG9948', '@id': '/targets/CG9948-dmelanogaster/', 'title': 'CG9948 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '64bc15af-9274-4a77-8e44-5eff2736768f', 'status': 'released'} dm3 3L 6946786 6966482 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF680FBR/ 17925854 Kevin White, UChicago b0b15ff2fe92154d57339a3069312381 https://www.encodeproject.org/files/ENCFF510FIW/@@download/ENCFF510FIW.bigWig released s3://encode-public/2018/09/19/0906d4d7-0e38-4c9c-a49f-e90b80e51a87/ENCFF510FIW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF492MLD bigWig bigWig read-depth normalized signal dm6 ENCSR074DEG Control ChIP-seq /fly-donors/ENCDO422AJO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38757/'], '@type': ['Target', 'Item'], 'name': 'CG9948-dmelanogaster', 'label': 'CG9948', '@id': '/targets/CG9948-dmelanogaster/', 'title': 'CG9948 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '64bc15af-9274-4a77-8e44-5eff2736768f', 'status': 'released'} dm3 3L 6946786 6966482 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF680FBR/ 17847299 Kevin White, UChicago 4639d33c10f9bcdbf5b9f9bd49bc6abd https://www.encodeproject.org/files/ENCFF492MLD/@@download/ENCFF492MLD.bigWig released s3://encode-public/2018/09/19/1e3a87fc-fa86-40c5-a862-cd3df780bc91/ENCFF492MLD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF705PQR fastq fastq reads ENCSR770PLF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 101 single-ended 2477494446 Richard Myers, HAIB 5f233c08b1009505b9885813234cfb36 SRA:SRR14103666 https://www.encodeproject.org/files/ENCFF705PQR/@@download/ENCFF705PQR.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2018/11/29/888c919e-5020-4525-908c-84e6259ab55c/ENCFF705PQR.fastq.gz mild to moderate bottlenecking ENCFF041MMU bam bam alignments GRCh38 ENCSR770PLF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF705PQR/ 1334211360 ENCODE Processing Pipeline 3616dcb576ffebcbe54f95e1af1cb6fa https://www.encodeproject.org/files/ENCFF041MMU/@@download/ENCFF041MMU.bam released s3://encode-public/2020/04/20/40e7308b-e427-470b-86eb-4e0bc3193be8/ENCFF041MMU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF684VPB bam bam unfiltered alignments GRCh38 ENCSR770PLF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF705PQR/ 2221981780 ENCODE Processing Pipeline bc050b6f18216a8d4c1bf7f311fe18cd https://www.encodeproject.org/files/ENCFF684VPB/@@download/ENCFF684VPB.bam released s3://encode-public/2020/04/20/12ea3a48-c291-4a42-8715-a54d3f6a55cd/ENCFF684VPB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF766NEX fastq fastq reads ENCSR956YUD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1947'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1748/'], '@type': ['Target', 'Item'], 'name': 'DLX4-human', 'label': 'DLX4', '@id': '/targets/DLX4-human/', 'title': 'DLX4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fbe9745c-246e-49b2-9901-7348611680fd', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF060SWA/ 2573287126 Michael Snyder, Stanford 4dae518b9dfac7dc44acb5ab733714c3 SRA:SRR14107396 https://www.encodeproject.org/files/ENCFF766NEX/@@download/ENCFF766NEX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/24b83f8a-1607-43d4-86aa-b9cd284fe48c/ENCFF766NEX.fastq.gz mild to moderate bottlenecking ENCFF060SWA fastq fastq reads ENCSR956YUD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1947'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1748/'], '@type': ['Target', 'Item'], 'name': 'DLX4-human', 'label': 'DLX4', '@id': '/targets/DLX4-human/', 'title': 'DLX4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fbe9745c-246e-49b2-9901-7348611680fd', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF766NEX/ 2287413986 Michael Snyder, Stanford 5c58ad3ad8f4e865f800ce61722d0191 SRA:SRR14107396 https://www.encodeproject.org/files/ENCFF060SWA/@@download/ENCFF060SWA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/e02d1b3b-5134-4978-966c-c5d72083bb7c/ENCFF060SWA.fastq.gz mild to moderate bottlenecking ENCFF632GAY bam bam unfiltered alignments GRCh38 ENCSR956YUD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1947'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1748/'], '@type': ['Target', 'Item'], 'name': 'DLX4-human', 'label': 'DLX4', '@id': '/targets/DLX4-human/', 'title': 'DLX4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fbe9745c-246e-49b2-9901-7348611680fd', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF060SWA/, /files/ENCFF766NEX/ 4730209775 ENCODE Processing Pipeline 7c92e56ae7a2eb58b8dab948114e6f03 https://www.encodeproject.org/files/ENCFF632GAY/@@download/ENCFF632GAY.bam released s3://encode-public/2020/05/15/1cf4af40-fb87-410b-af2a-6213ab752c4e/ENCFF632GAY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF330ZKH bam bam alignments GRCh38 ENCSR956YUD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1947'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1748/'], '@type': ['Target', 'Item'], 'name': 'DLX4-human', 'label': 'DLX4', '@id': '/targets/DLX4-human/', 'title': 'DLX4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fbe9745c-246e-49b2-9901-7348611680fd', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF060SWA/, /files/ENCFF766NEX/ 3538194299 ENCODE Processing Pipeline 0f9d9e51471fa9703ecb726094bdf216 https://www.encodeproject.org/files/ENCFF330ZKH/@@download/ENCFF330ZKH.bam released s3://encode-public/2020/05/15/99d6427d-ef49-4aca-b583-ad1e22fa64b1/ENCFF330ZKH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF089OUF fastq fastq reads ENCSR479BNA Control ChIP-seq /fly-donors/ENCDO164AQL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47767/'], '@type': ['Target', 'Item'], 'name': 'crc-dmelanogaster', 'label': 'crc', '@id': '/targets/crc-dmelanogaster/', 'title': 'crc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'd79c3800-5ef9-4615-b356-08f2d3e744ea', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 510342515 Kevin White, UChicago d8c2e5a9bbb33d73037dd689ac443709 https://www.encodeproject.org/files/ENCFF089OUF/@@download/ENCFF089OUF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/3c0bd570-4aae-4fc7-8afd-b05cf3886505/ENCFF089OUF.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF438IGP bam bam alignments dm3 ENCSR479BNA Control ChIP-seq /fly-donors/ENCDO164AQL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47767/'], '@type': ['Target', 'Item'], 'name': 'crc-dmelanogaster', 'label': 'crc', '@id': '/targets/crc-dmelanogaster/', 'title': 'crc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'd79c3800-5ef9-4615-b356-08f2d3e744ea', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF089OUF/ 753067436 Kevin White, UChicago beabb9db574f2c6513b3e67117ca2e03 https://www.encodeproject.org/files/ENCFF438IGP/@@download/ENCFF438IGP.bam released s3://encode-public/2015/08/05/3e08790d-3e23-40a8-a821-553c181d8d4d/ENCFF438IGP.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF282IVG bigWig bigWig read-depth normalized signal dm3 ENCSR479BNA Control ChIP-seq /fly-donors/ENCDO164AQL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47767/'], '@type': ['Target', 'Item'], 'name': 'crc-dmelanogaster', 'label': 'crc', '@id': '/targets/crc-dmelanogaster/', 'title': 'crc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'd79c3800-5ef9-4615-b356-08f2d3e744ea', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF438IGP/ 15344726 Kevin White, UChicago a102bd692fcb61d5d12f6fa02b7e434f https://www.encodeproject.org/files/ENCFF282IVG/@@download/ENCFF282IVG.bigWig released s3://encode-public/2015/10/07/a8030d2c-bccb-4b35-9024-44ad9c7a6928/ENCFF282IVG.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF262ERK bigWig bigWig signal of unique reads dm3 ENCSR479BNA Control ChIP-seq /fly-donors/ENCDO164AQL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47767/'], '@type': ['Target', 'Item'], 'name': 'crc-dmelanogaster', 'label': 'crc', '@id': '/targets/crc-dmelanogaster/', 'title': 'crc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'd79c3800-5ef9-4615-b356-08f2d3e744ea', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF438IGP/ 15300364 Kevin White, UChicago aef37e4512a4fdffc9ebe05a502803b4 https://www.encodeproject.org/files/ENCFF262ERK/@@download/ENCFF262ERK.bigWig released s3://encode-public/2015/10/07/47b4727c-9609-4e9c-baad-4f9267b2ccaf/ENCFF262ERK.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF879EGX bam bam alignments dm6 ENCSR479BNA Control ChIP-seq /fly-donors/ENCDO164AQL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47767/'], '@type': ['Target', 'Item'], 'name': 'crc-dmelanogaster', 'label': 'crc', '@id': '/targets/crc-dmelanogaster/', 'title': 'crc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'd79c3800-5ef9-4615-b356-08f2d3e744ea', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF089OUF/ 749589015 Kevin White, UChicago 43a81828af24fcec47699eea95dba7a4 https://www.encodeproject.org/files/ENCFF879EGX/@@download/ENCFF879EGX.bam released s3://encode-public/2016/04/21/55f7e88a-f1b7-48f7-9855-d019a8a2562f/ENCFF879EGX.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF033YUM bigWig bigWig read-depth normalized signal dm6 ENCSR479BNA Control ChIP-seq /fly-donors/ENCDO164AQL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47767/'], '@type': ['Target', 'Item'], 'name': 'crc-dmelanogaster', 'label': 'crc', '@id': '/targets/crc-dmelanogaster/', 'title': 'crc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'd79c3800-5ef9-4615-b356-08f2d3e744ea', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879EGX/ 17481307 Kevin White, UChicago 772c73c781acc3d2b726ef396ad48fe4 https://www.encodeproject.org/files/ENCFF033YUM/@@download/ENCFF033YUM.bigWig released s3://encode-public/2016/06/20/714893d7-f9db-4a46-b6a0-c0cbbc3bad60/ENCFF033YUM.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF622AMD bigWig bigWig signal of unique reads dm6 ENCSR479BNA Control ChIP-seq /fly-donors/ENCDO164AQL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47767/'], '@type': ['Target', 'Item'], 'name': 'crc-dmelanogaster', 'label': 'crc', '@id': '/targets/crc-dmelanogaster/', 'title': 'crc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'd79c3800-5ef9-4615-b356-08f2d3e744ea', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879EGX/ 17410899 Kevin White, UChicago 213ac6031e7983ef6bd6653e77f6c96e https://www.encodeproject.org/files/ENCFF622AMD/@@download/ENCFF622AMD.bigWig released s3://encode-public/2016/06/20/fbcef522-fc81-48c1-a082-cd14e945bd56/ENCFF622AMD.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF236QPL fastq fastq reads ENCSR840ESX Control ChIP-seq /fly-donors/ENCDO000FVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43725/'], '@type': ['Target', 'Item'], 'name': 'Med-dmelanogaster', 'label': 'Med', '@id': '/targets/Med-dmelanogaster/', 'title': 'Med (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a16ded4-ab94-4c68-aeba-ba1f70824b26', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1855511834 Kevin White, UChicago 6cca23c1a59301418d2f7c3666b12cee https://www.encodeproject.org/files/ENCFF236QPL/@@download/ENCFF236QPL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/6cc4cca2-c904-4627-90a5-6d522c5ddee3/ENCFF236QPL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF466IOX bam bam alignments dm3 ENCSR840ESX Control ChIP-seq /fly-donors/ENCDO000FVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43725/'], '@type': ['Target', 'Item'], 'name': 'Med-dmelanogaster', 'label': 'Med', '@id': '/targets/Med-dmelanogaster/', 'title': 'Med (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a16ded4-ab94-4c68-aeba-ba1f70824b26', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF236QPL/ 2699144300 Kevin White, UChicago 8a04cb47a2daafcc0685ea215c7b48da https://www.encodeproject.org/files/ENCFF466IOX/@@download/ENCFF466IOX.bam released s3://encode-public/2015/08/03/dc2e82e2-759c-4add-a686-42205d59c18c/ENCFF466IOX.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF744QHG bigWig bigWig signal of unique reads dm3 ENCSR840ESX Control ChIP-seq /fly-donors/ENCDO000FVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43725/'], '@type': ['Target', 'Item'], 'name': 'Med-dmelanogaster', 'label': 'Med', '@id': '/targets/Med-dmelanogaster/', 'title': 'Med (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a16ded4-ab94-4c68-aeba-ba1f70824b26', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF466IOX/ 15683321 Kevin White, UChicago 86bb5ee74b83a4ec5e2e99ddb8ac16dd https://www.encodeproject.org/files/ENCFF744QHG/@@download/ENCFF744QHG.bigWig released s3://encode-public/2015/10/05/5a206dc8-68ba-4147-8783-3f8029b646c0/ENCFF744QHG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF682AHP bigWig bigWig read-depth normalized signal dm3 ENCSR840ESX Control ChIP-seq /fly-donors/ENCDO000FVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43725/'], '@type': ['Target', 'Item'], 'name': 'Med-dmelanogaster', 'label': 'Med', '@id': '/targets/Med-dmelanogaster/', 'title': 'Med (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a16ded4-ab94-4c68-aeba-ba1f70824b26', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF466IOX/ 15662853 Kevin White, UChicago ebbd40d0740f5474c393a24d6084041a https://www.encodeproject.org/files/ENCFF682AHP/@@download/ENCFF682AHP.bigWig released s3://encode-public/2015/10/05/071c2505-75ea-4a30-9f4e-e86d71dafb9e/ENCFF682AHP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF416PSC bam bam alignments dm6 ENCSR840ESX Control ChIP-seq /fly-donors/ENCDO000FVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43725/'], '@type': ['Target', 'Item'], 'name': 'Med-dmelanogaster', 'label': 'Med', '@id': '/targets/Med-dmelanogaster/', 'title': 'Med (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a16ded4-ab94-4c68-aeba-ba1f70824b26', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF236QPL/ 2684965961 Kevin White, UChicago 60c576baf46a8d22140dbc8b89c0e324 https://www.encodeproject.org/files/ENCFF416PSC/@@download/ENCFF416PSC.bam released s3://encode-public/2016/04/22/6f3a377a-9859-4835-a9e2-b572ca805afd/ENCFF416PSC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF446QNL bigWig bigWig signal of unique reads dm6 ENCSR840ESX Control ChIP-seq /fly-donors/ENCDO000FVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43725/'], '@type': ['Target', 'Item'], 'name': 'Med-dmelanogaster', 'label': 'Med', '@id': '/targets/Med-dmelanogaster/', 'title': 'Med (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a16ded4-ab94-4c68-aeba-ba1f70824b26', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF416PSC/ 17765568 Kevin White, UChicago 1b4fd842bea99016057bd3e96dd17cb9 https://www.encodeproject.org/files/ENCFF446QNL/@@download/ENCFF446QNL.bigWig released s3://encode-public/2016/06/20/7c1c959e-0a08-42ec-b772-ba0889811a9e/ENCFF446QNL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF193EAD bigWig bigWig read-depth normalized signal dm6 ENCSR840ESX Control ChIP-seq /fly-donors/ENCDO000FVI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43725/'], '@type': ['Target', 'Item'], 'name': 'Med-dmelanogaster', 'label': 'Med', '@id': '/targets/Med-dmelanogaster/', 'title': 'Med (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a16ded4-ab94-4c68-aeba-ba1f70824b26', 'status': 'released'} dm3 3R 27426316 27445850 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF416PSC/ 17727928 Kevin White, UChicago 482f3b6981dd09f0d79d3840c4d215b6 https://www.encodeproject.org/files/ENCFF193EAD/@@download/ENCFF193EAD.bigWig released s3://encode-public/2016/06/20/77514bea-db7d-4988-96c0-5bf364ef3b38/ENCFF193EAD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF649TSD fastq fastq reads ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 398066310 Kevin White, UChicago e5d00b8ae8bab0fb6901ffc1a8b42780 https://www.encodeproject.org/files/ENCFF649TSD/@@download/ENCFF649TSD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/10/7c21cf7f-c6a3-438e-b68b-9c398b9d6e77/ENCFF649TSD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF113OKC fastq fastq reads ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 893020438 Kevin White, UChicago d8275b37cb3b183ea087a6212612291c https://www.encodeproject.org/files/ENCFF113OKC/@@download/ENCFF113OKC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/59220652-d96a-4bb7-88fc-af5631805ea3/ENCFF113OKC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF245EWA bam bam alignments dm3 ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF649TSD/, /files/ENCFF113OKC/ 1571655061 Kevin White, UChicago 422902f9216314cc8c6c314a9f85c57d https://www.encodeproject.org/files/ENCFF245EWA/@@download/ENCFF245EWA.bam released s3://encode-public/2016/04/11/646c9747-a417-499c-a6a8-4193da1f3847/ENCFF245EWA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF050RQY bigWig bigWig read-depth normalized signal dm3 ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF245EWA/ 15598239 Kevin White, UChicago 821d2a898aae78d870a7f4eecdf30127 https://www.encodeproject.org/files/ENCFF050RQY/@@download/ENCFF050RQY.bigWig released s3://encode-public/2016/04/11/1d579095-f81a-44c3-a5e0-7e9f13afe984/ENCFF050RQY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF028DVS bigWig bigWig signal of unique reads dm3 ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF245EWA/ 15557119 Kevin White, UChicago a7c8dfa3723d3846a3d34a618a88bc41 https://www.encodeproject.org/files/ENCFF028DVS/@@download/ENCFF028DVS.bigWig released s3://encode-public/2016/04/11/c3b5ba9f-f22d-499e-b314-17857d439978/ENCFF028DVS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF009SMF bam bam alignments dm6 ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF649TSD/, /files/ENCFF113OKC/ 1564059568 Kevin White, UChicago 6fb2f4b9379dbe2b6508e72b1315371a https://www.encodeproject.org/files/ENCFF009SMF/@@download/ENCFF009SMF.bam released s3://encode-public/2016/04/22/b1d607a9-3af7-42a8-9aa3-db07e11d5a01/ENCFF009SMF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF380ZAU bigWig bigWig signal of unique reads dm6 ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF009SMF/ 17576266 Kevin White, UChicago de70671d2bc39a2559422a98b2e1e297 https://www.encodeproject.org/files/ENCFF380ZAU/@@download/ENCFF380ZAU.bigWig released s3://encode-public/2016/06/20/bcb31c50-8c85-4d11-9c53-b5c88c2b7607/ENCFF380ZAU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF941NYZ bigWig bigWig read-depth normalized signal dm6 ENCSR996JOD Control ChIP-seq /fly-donors/ENCDO489SFZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42536/'], '@type': ['Target', 'Item'], 'name': 'tin-dmelanogaster', 'label': 'tin', '@id': '/targets/tin-dmelanogaster/', 'title': 'tin (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'eb2aa269-03e3-4801-baf6-0e6961c2d5a0', 'status': 'released'} dm3 3R 17197063 17217210 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF009SMF/ 17637175 Kevin White, UChicago ee357401986a442cbee38e4876cba44b https://www.encodeproject.org/files/ENCFF941NYZ/@@download/ENCFF941NYZ.bigWig released s3://encode-public/2016/06/20/9372710c-73dc-47af-8b3e-dc7e9cf70052/ENCFF941NYZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF925JZD fastq fastq reads ENCSR693BJZ Control ChIP-seq /fly-donors/ENCDO173IDJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41831/'], '@type': ['Target', 'Item'], 'name': 'CG6654-dmelanogaster', 'label': 'CG6654', '@id': '/targets/CG6654-dmelanogaster/', 'title': 'CG6654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f621ae52-3f3b-4b42-982c-1e81c8b98730', 'status': 'released'} dm3 3R 11027085 11048604 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1429673704 Kevin White, UChicago 050cec2317485802fd7fb792964ce371 https://www.encodeproject.org/files/ENCFF925JZD/@@download/ENCFF925JZD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/0507904a-15c6-4a92-8625-b95e1b8afe9e/ENCFF925JZD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF499IDB bam bam alignments dm3 ENCSR693BJZ Control ChIP-seq /fly-donors/ENCDO173IDJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41831/'], '@type': ['Target', 'Item'], 'name': 'CG6654-dmelanogaster', 'label': 'CG6654', '@id': '/targets/CG6654-dmelanogaster/', 'title': 'CG6654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f621ae52-3f3b-4b42-982c-1e81c8b98730', 'status': 'released'} dm3 3R 11027085 11048604 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF925JZD/, /files/ENCFF059UHX/ 1980070537 Kevin White, UChicago 66b46dcf734ecfc23f3b4c23f815d93c https://www.encodeproject.org/files/ENCFF499IDB/@@download/ENCFF499IDB.bam released s3://encode-public/2016/12/22/970804f5-f8af-4e2a-a64c-e4e5e9a4a2bb/ENCFF499IDB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF419QMY bam bam alignments dm6 ENCSR693BJZ Control ChIP-seq /fly-donors/ENCDO173IDJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41831/'], '@type': ['Target', 'Item'], 'name': 'CG6654-dmelanogaster', 'label': 'CG6654', '@id': '/targets/CG6654-dmelanogaster/', 'title': 'CG6654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f621ae52-3f3b-4b42-982c-1e81c8b98730', 'status': 'released'} dm3 3R 11027085 11048604 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF925JZD/, /files/ENCFF479RCH/ 1967275317 Kevin White, UChicago 9ccd0b79376028456a3bb71d11f64745 https://www.encodeproject.org/files/ENCFF419QMY/@@download/ENCFF419QMY.bam released s3://encode-public/2016/12/22/c68cab3c-3a80-4cf1-b25e-cade2a0d6c11/ENCFF419QMY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF279UQE bigWig bigWig read-depth normalized signal dm3 ENCSR693BJZ Control ChIP-seq /fly-donors/ENCDO173IDJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41831/'], '@type': ['Target', 'Item'], 'name': 'CG6654-dmelanogaster', 'label': 'CG6654', '@id': '/targets/CG6654-dmelanogaster/', 'title': 'CG6654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f621ae52-3f3b-4b42-982c-1e81c8b98730', 'status': 'released'} dm3 3R 11027085 11048604 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF499IDB/ 15642423 Kevin White, UChicago 2c9370f12b68a2b598f58ff8fceaf347 https://www.encodeproject.org/files/ENCFF279UQE/@@download/ENCFF279UQE.bigWig released s3://encode-public/2017/01/03/275eb6b1-31e0-466d-953c-0c3b7ab00335/ENCFF279UQE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF483WJL bigWig bigWig signal of unique reads dm3 ENCSR693BJZ Control ChIP-seq /fly-donors/ENCDO173IDJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41831/'], '@type': ['Target', 'Item'], 'name': 'CG6654-dmelanogaster', 'label': 'CG6654', '@id': '/targets/CG6654-dmelanogaster/', 'title': 'CG6654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f621ae52-3f3b-4b42-982c-1e81c8b98730', 'status': 'released'} dm3 3R 11027085 11048604 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF499IDB/ 15689130 Kevin White, UChicago bc760e00c8843fe33ec9848591de128c https://www.encodeproject.org/files/ENCFF483WJL/@@download/ENCFF483WJL.bigWig released s3://encode-public/2017/01/03/07f570cc-da89-4bfe-bb4b-3805b72426a1/ENCFF483WJL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF762ACQ bigWig bigWig signal of unique reads dm6 ENCSR693BJZ Control ChIP-seq /fly-donors/ENCDO173IDJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41831/'], '@type': ['Target', 'Item'], 'name': 'CG6654-dmelanogaster', 'label': 'CG6654', '@id': '/targets/CG6654-dmelanogaster/', 'title': 'CG6654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f621ae52-3f3b-4b42-982c-1e81c8b98730', 'status': 'released'} dm3 3R 11027085 11048604 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF419QMY/ 17715926 Kevin White, UChicago a41da4154a53e1846a583e902dae151d https://www.encodeproject.org/files/ENCFF762ACQ/@@download/ENCFF762ACQ.bigWig released s3://encode-public/2017/01/04/f5dec3ff-bc4f-455a-8d86-bc016df06a93/ENCFF762ACQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF870BFA bigWig bigWig read-depth normalized signal dm6 ENCSR693BJZ Control ChIP-seq /fly-donors/ENCDO173IDJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41831/'], '@type': ['Target', 'Item'], 'name': 'CG6654-dmelanogaster', 'label': 'CG6654', '@id': '/targets/CG6654-dmelanogaster/', 'title': 'CG6654 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f621ae52-3f3b-4b42-982c-1e81c8b98730', 'status': 'released'} dm3 3R 11027085 11048604 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF419QMY/ 17642195 Kevin White, UChicago e10333354fa133b514d0d514e9484e7e https://www.encodeproject.org/files/ENCFF870BFA/@@download/ENCFF870BFA.bigWig released s3://encode-public/2017/01/04/30283a0d-0181-44d7-a791-102c2c664763/ENCFF870BFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF348TNX fastq fastq reads ENCSR431JLY Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 740709079 Kevin White, UChicago 2064a6867381e89af4b96fa9bf458826 https://www.encodeproject.org/files/ENCFF348TNX/@@download/ENCFF348TNX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/6c5f4e3c-6e70-43fe-bf79-b29a2592b877/ENCFF348TNX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF786LWS bam bam alignments dm3 ENCSR431JLY Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF348TNX/, /files/ENCFF059UHX/ 1005827377 Kevin White, UChicago b137a979117e040fbf3c68075a9551a2 https://www.encodeproject.org/files/ENCFF786LWS/@@download/ENCFF786LWS.bam released s3://encode-public/2016/12/22/d6b898ae-5a11-474a-b0e7-b46be587d3b4/ENCFF786LWS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF380ICM bam bam alignments dm6 ENCSR431JLY Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF348TNX/, /files/ENCFF479RCH/ 999647793 Kevin White, UChicago 42a8f162761902f15b0ab72df176da21 https://www.encodeproject.org/files/ENCFF380ICM/@@download/ENCFF380ICM.bam released s3://encode-public/2016/12/22/f97acda8-01e7-45fc-9e89-ad00410a949a/ENCFF380ICM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF927SFW bigWig bigWig read-depth normalized signal dm3 ENCSR431JLY Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF786LWS/ 15412629 Kevin White, UChicago bc4126f18204138a39a8eb85c987f476 https://www.encodeproject.org/files/ENCFF927SFW/@@download/ENCFF927SFW.bigWig released s3://encode-public/2017/01/03/01b97f03-9975-4bfa-90f1-2e7edd4daccf/ENCFF927SFW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF889SIJ bigWig bigWig signal of unique reads dm3 ENCSR431JLY Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF786LWS/ 15406185 Kevin White, UChicago 13b0f4135722b7bdf8f987730f1fa7df https://www.encodeproject.org/files/ENCFF889SIJ/@@download/ENCFF889SIJ.bigWig released s3://encode-public/2017/01/03/c10b1be5-9959-4e33-9968-1c43cb4346c1/ENCFF889SIJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF045SVT bigWig bigWig read-depth normalized signal dm6 ENCSR431JLY Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF380ICM/ 17487843 Kevin White, UChicago 95c79e6548f2aa2bf75e780174b91cdc https://www.encodeproject.org/files/ENCFF045SVT/@@download/ENCFF045SVT.bigWig released s3://encode-public/2017/01/04/9eec925c-a497-4905-9d89-d0c83146d9d4/ENCFF045SVT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF408CAY bigWig bigWig signal of unique reads dm6 ENCSR431JLY Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF380ICM/ 17476074 Kevin White, UChicago bde080f0c3884e39d5969cf3e1a3f119 https://www.encodeproject.org/files/ENCFF408CAY/@@download/ENCFF408CAY.bigWig released s3://encode-public/2017/01/04/9e80f0f1-65aa-4343-87af-6b5f587b869b/ENCFF408CAY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF001HYQ bam bam alignments hg19 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF001HYX/ 890357354 John Stamatoyannopoulos, UW 865b7374b5917014e92fbe0e4932afc4 https://www.encodeproject.org/files/ENCFF001HYQ/@@download/ENCFF001HYQ.bam archived s3://encode-public/2011/06/25/94751b89-f047-490d-a6c8-136e55ae9287/ENCFF001HYQ.bam Lab custom hg19 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF001HYU bigWig bigWig raw signal hg19 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 /files/ENCFF001HYQ/ 190674633 John Stamatoyannopoulos, UW 4ccd19d5339ff06b8acaa749b114503a https://www.encodeproject.org/files/ENCFF001HYU/@@download/ENCFF001HYU.bigWig archived s3://encode-public/2011/06/25/65251b41-e979-4ecf-83e0-219ee7f08ff1/ENCFF001HYU.bigWig Lab custom hg19 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF001HYX fastq fastq reads ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 single-ended 919231009 John Stamatoyannopoulos, UW 579f0298aea7cdca69ee0a52d57af1e9 https://www.encodeproject.org/files/ENCFF001HYX/@@download/ENCFF001HYX.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/fd2d44a9-2b7f-41f7-b238-4b427d030461/ENCFF001HYX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF041ZZY bam bam unfiltered alignments GRCh38 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HYX/ 1126289468 ENCODE Processing Pipeline 6a02ac3a0a434073e78c2075fea3be70 https://www.encodeproject.org/files/ENCFF041ZZY/@@download/ENCFF041ZZY.bam released s3://encode-public/2016/08/09/aa339244-83f4-4d88-84ca-48d7760adc87/ENCFF041ZZY.bam ENCODE3 GRCh38 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF694ANH bam bam alignments GRCh38 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HYX/ 828707043 ENCODE Processing Pipeline d7f04feb2390e2888cc99a11761f2d94 https://www.encodeproject.org/files/ENCFF694ANH/@@download/ENCFF694ANH.bam released s3://encode-public/2016/08/09/9a9f3154-659d-4292-ab73-e906681e8440/ENCFF694ANH.bam ENCODE3 GRCh38 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF203DVL bam bam unfiltered alignments hg19 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HYX/ 1120099886 ENCODE Processing Pipeline 248b11ede4cffd8e6e9e0b33a4a943e1 https://www.encodeproject.org/files/ENCFF203DVL/@@download/ENCFF203DVL.bam released s3://encode-public/2016/11/13/f8038bb5-b39c-4b99-b413-4851deba5a3e/ENCFF203DVL.bam ENCODE3 hg19 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF714FTU bam bam alignments hg19 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HYX/ 829044671 ENCODE Processing Pipeline e33af0f97a08c464fef4313643bf7592 https://www.encodeproject.org/files/ENCFF714FTU/@@download/ENCFF714FTU.bam released s3://encode-public/2016/11/13/d10e191b-4292-4878-97a0-d911abb2e735/ENCFF714FTU.bam ENCODE3 hg19 archived missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF112FKD bam bam alignments GRCh38 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HYX/ 902433839 ENCODE Processing Pipeline ab1d81615fa5af8ed72779011af3c72c https://www.encodeproject.org/files/ENCFF112FKD/@@download/ENCFF112FKD.bam released s3://encode-public/2020/09/03/73634c05-cc56-41be-9500-4898829e2384/ENCFF112FKD.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF213VPE bam bam unfiltered alignments GRCh38 ENCSR000DXX Control ChIP-seq /human-donors/ENCDO000ADU/ EFO:0001260 WI38 cell line Homo sapiens afimoxifene 20.0 nM 72.0 hour insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5894/'], '@type': ['Target', 'Item'], 'name': 'RAF1-human', 'label': 'RAF1', '@id': '/targets/RAF1-human/', 'title': 'RAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b1ac3296-1bdd-11e3-954f-14109fe2b29d', 'status': 'released'} DNA 2012-01-17 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF001HYX/ 1098494152 ENCODE Processing Pipeline 324d19c7d37c80362dbb0631aa021f16 https://www.encodeproject.org/files/ENCFF213VPE/@@download/ENCFF213VPE.bam released s3://encode-public/2020/09/03/26602ef7-29cc-4d5a-9a67-4b0fe49057c9/ENCFF213VPE.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification reagents, missing genetic modification characterization, low read length, missing biosample characterization ENCFF707UJW fastq fastq reads ENCSR808XII Control ChIP-seq /fly-donors/ENCDO879YUD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': 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characterization, missing biosample characterization ENCFF162GSD bam bam alignments dm6 ENCSR808XII Control ChIP-seq /fly-donors/ENCDO879YUD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40720/'], '@type': ['Target', 'Item'], 'name': 'CG10979-dmelanogaster', 'label': 'CG10979', '@id': '/targets/CG10979-dmelanogaster/', 'title': 'CG10979 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '4f7bbb0b-4288-497e-8c36-3f1204deb562', 'status': 'released'} dm3 3R 5788340 5805788 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF707UJW/, /files/ENCFF479RCH/ 1540198470 Kevin White, UChicago c045a0187330559932d20bf485bc78db https://www.encodeproject.org/files/ENCFF162GSD/@@download/ENCFF162GSD.bam released s3://encode-public/2018/12/07/a2bba301-59bc-49c1-9d70-58eabe7603bf/ENCFF162GSD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF185GFX bigWig bigWig signal of unique reads dm6 ENCSR808XII Control ChIP-seq /fly-donors/ENCDO879YUD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40720/'], '@type': ['Target', 'Item'], 'name': 'CG10979-dmelanogaster', 'label': 'CG10979', '@id': 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moderate bottlenecking, moderate library complexity ENCFF638AQQ bam bam redacted alignments hg19 ENCSR168STG Control ChIP-seq /human-donors/ENCDO371NVV/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE 300-600 1 1_1, 1_2 76 /files/ENCFF318JDQ/, /files/ENCFF009GEU/, /files/ENCFF046WYC/, /files/ENCFF807MUK/, /files/ENCFF494TSO/ 569323772 ENCODE Processing Pipeline 4ea4362c8b1fd436175cb314957de3fa https://www.encodeproject.org/files/ENCFF638AQQ/@@download/ENCFF638AQQ.bam released s3://encode-public/2017/11/19/461b0508-9464-4750-bcf3-8e5848507c42/ENCFF638AQQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF700UBO bam bam redacted unfiltered alignments GRCh38 ENCSR168STG Control ChIP-seq /human-donors/ENCDO371NVV/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE 300-600 1 1_1, 1_2 76 /files/ENCFF318JDQ/, /files/ENCFF009GEU/, /files/ENCFF046WYC/, /files/ENCFF494TSO/, /files/ENCFF643CGH/ 830851478 ENCODE Processing Pipeline 16eee5e66372a92b0745784295d89d11 https://www.encodeproject.org/files/ENCFF700UBO/@@download/ENCFF700UBO.bam released s3://encode-public/2017/11/19/589561e5-a389-49e5-84e2-44d1530b53f6/ENCFF700UBO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF408ECK bam bam redacted alignments GRCh38 ENCSR168STG Control ChIP-seq /human-donors/ENCDO371NVV/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE 300-600 1 1_1, 1_2 76 /files/ENCFF318JDQ/, /files/ENCFF009GEU/, /files/ENCFF046WYC/, /files/ENCFF494TSO/, /files/ENCFF643CGH/ 570167845 ENCODE Processing Pipeline 6739a43cdb85ebc1dcf2c7e99615f1ca https://www.encodeproject.org/files/ENCFF408ECK/@@download/ENCFF408ECK.bam released s3://encode-public/2017/11/19/ca720cc8-ab5a-4531-8e4e-b1d3e6890735/ENCFF408ECK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF067TQJ bam bam redacted alignments GRCh38 ENCSR168STG Control ChIP-seq /human-donors/ENCDO371NVV/ NTR:0001226 parathyroid adenoma tissue Homo sapiens DNA 2017-12-01 ENCODE 300-600 1 1_1, 1_2 76 /files/ENCFF046WYC/, /files/ENCFF318JDQ/, /files/ENCFF110MCL/, /files/ENCFF494TSO/, /files/ENCFF009GEU/ 1916275251 ENCODE Processing Pipeline fb0a9bcdcb1178cfded0323341570bb2 https://www.encodeproject.org/files/ENCFF067TQJ/@@download/ENCFF067TQJ.bam released s3://encode-public/2021/01/28/5520301c-8641-4691-8441-873c6b12e779/ENCFF067TQJ.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF992FRY fastq fastq reads ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 91937845 Michael Snyder, Stanford 8a4b2738b5704358b50a47df28234518 https://www.encodeproject.org/files/ENCFF992FRY/@@download/ENCFF992FRY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/a6892478-683d-4716-95b5-586c472f2c5a/ENCFF992FRY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF019OZN fastq fastq reads ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 78422438 Michael Snyder, Stanford 16d9c387ef39d00418e474ddfb7c35cd https://www.encodeproject.org/files/ENCFF019OZN/@@download/ENCFF019OZN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/714904b3-bbe2-4af9-b2e1-e94ba97d45f0/ENCFF019OZN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF575BTP bigWig bigWig read-depth normalized signal ce10 ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF956QFW/ 9970517 Kevin White, UChicago a9f09205eaa71b744b0ba3f50de694f0 https://www.encodeproject.org/files/ENCFF575BTP/@@download/ENCFF575BTP.bigWig released s3://encode-public/2017/04/29/562b914f-23ad-483f-9d1f-8b95a6f27c06/ENCFF575BTP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF767TGR bigWig bigWig signal of unique reads ce10 ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF956QFW/ 9973538 Kevin White, UChicago a716780589808b7ec4bf33da92b6750a https://www.encodeproject.org/files/ENCFF767TGR/@@download/ENCFF767TGR.bigWig released s3://encode-public/2017/04/29/e6f237fe-cd93-4249-8f96-c6cea8c5710b/ENCFF767TGR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF956QFW bam bam alignments ce10 ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF992FRY/, /files/ENCFF019OZN/, /files/ENCFF987UMF/ 182024575 Kevin White, UChicago f077aaa0b3e055cd1c7cc05e71e62c9b https://www.encodeproject.org/files/ENCFF956QFW/@@download/ENCFF956QFW.bam released s3://encode-public/2018/01/05/ea11f9a3-62bf-4816-b3f7-f769e4f2fc33/ENCFF956QFW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF516NOG bam bam alignments ce11 ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF992FRY/, /files/ENCFF019OZN/, /files/ENCFF586MOL/ 205628967 Kevin White, UChicago da03fa74df16138fe0162c659928fb7b https://www.encodeproject.org/files/ENCFF516NOG/@@download/ENCFF516NOG.bam released s3://encode-public/2018/01/05/d16099f8-38d6-40e1-8e5d-31c2d67c1179/ENCFF516NOG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF205MCH bigWig bigWig signal of unique reads ce11 ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF516NOG/ 9973474 Kevin White, UChicago a8625ab9d1616af660175da879bc8140 https://www.encodeproject.org/files/ENCFF205MCH/@@download/ENCFF205MCH.bigWig released s3://encode-public/2018/01/22/b478d0bf-aef7-4987-b7a1-abfdd9a58320/ENCFF205MCH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF402HBE bigWig bigWig read-depth normalized signal ce11 ENCSR354PDY Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF516NOG/ 9970983 Kevin White, UChicago b91e3d6adf823714368c5c3b84b7e33a https://www.encodeproject.org/files/ENCFF402HBE/@@download/ENCFF402HBE.bigWig released s3://encode-public/2018/01/22/f77d4940-8b68-4f9e-bd12-1ac1fdeb8735/ENCFF402HBE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF218ROX fastq fastq reads ENCSR665ROL Control ChIP-seq /fly-donors/ENCDO138DXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31326/'], '@type': ['Target', 'Item'], 'name': 'CG2875-dmelanogaster', 'label': 'CG2875', '@id': '/targets/CG2875-dmelanogaster/', 'title': 'CG2875 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e230d5a1-6f8a-4698-b032-16c47e169a2d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1267785816 Kevin White, UChicago 3439ec6719bbe18aee9377985366af0f https://www.encodeproject.org/files/ENCFF218ROX/@@download/ENCFF218ROX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/5250363a-326b-4a04-ad79-c87c7b8872eb/ENCFF218ROX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF879UIL bam bam alignments dm3 ENCSR665ROL Control ChIP-seq /fly-donors/ENCDO138DXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31326/'], '@type': ['Target', 'Item'], 'name': 'CG2875-dmelanogaster', 'label': 'CG2875', '@id': '/targets/CG2875-dmelanogaster/', 'title': 'CG2875 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e230d5a1-6f8a-4698-b032-16c47e169a2d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF218ROX/ 1713411838 Kevin White, UChicago 04f3f7378ea6663a3511deed67a8048c https://www.encodeproject.org/files/ENCFF879UIL/@@download/ENCFF879UIL.bam released s3://encode-public/2017/09/12/d06d1a73-863c-44d6-a5e4-2fc23800e6e6/ENCFF879UIL.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF984QVC bam bam alignments dm6 ENCSR665ROL Control ChIP-seq /fly-donors/ENCDO138DXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31326/'], '@type': ['Target', 'Item'], 'name': 'CG2875-dmelanogaster', 'label': 'CG2875', '@id': '/targets/CG2875-dmelanogaster/', 'title': 'CG2875 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e230d5a1-6f8a-4698-b032-16c47e169a2d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF218ROX/ 1702062063 Kevin White, UChicago 2f7b0926b01d72ba17ac69e04518a3cb https://www.encodeproject.org/files/ENCFF984QVC/@@download/ENCFF984QVC.bam released s3://encode-public/2017/09/13/74d3c60d-ba4d-4e1c-9be0-926d87da2b30/ENCFF984QVC.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF424QGD bigWig bigWig signal of unique reads dm3 ENCSR665ROL Control ChIP-seq /fly-donors/ENCDO138DXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31326/'], '@type': ['Target', 'Item'], 'name': 'CG2875-dmelanogaster', 'label': 'CG2875', '@id': '/targets/CG2875-dmelanogaster/', 'title': 'CG2875 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e230d5a1-6f8a-4698-b032-16c47e169a2d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879UIL/ 15614353 Kevin White, UChicago 92822d10c01a42a692e07442bbf79832 https://www.encodeproject.org/files/ENCFF424QGD/@@download/ENCFF424QGD.bigWig released s3://encode-public/2017/09/14/0fe8a5ae-4ac5-4e99-93b4-300fb893da57/ENCFF424QGD.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF688ALN bigWig bigWig read-depth normalized signal dm3 ENCSR665ROL Control ChIP-seq /fly-donors/ENCDO138DXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31326/'], '@type': ['Target', 'Item'], 'name': 'CG2875-dmelanogaster', 'label': 'CG2875', '@id': '/targets/CG2875-dmelanogaster/', 'title': 'CG2875 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e230d5a1-6f8a-4698-b032-16c47e169a2d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF879UIL/ 15556301 Kevin White, UChicago 4f1ecbbc846739e431fb84a781e04a4b https://www.encodeproject.org/files/ENCFF688ALN/@@download/ENCFF688ALN.bigWig released s3://encode-public/2017/09/14/712257ba-167b-4bba-8dfa-ee2b7fefd99a/ENCFF688ALN.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF600ELC bigWig bigWig read-depth normalized signal dm6 ENCSR665ROL Control ChIP-seq /fly-donors/ENCDO138DXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31326/'], '@type': ['Target', 'Item'], 'name': 'CG2875-dmelanogaster', 'label': 'CG2875', '@id': '/targets/CG2875-dmelanogaster/', 'title': 'CG2875 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e230d5a1-6f8a-4698-b032-16c47e169a2d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF984QVC/ 17707412 Kevin White, UChicago 8ab2a0861b6befa3ba8a5558b4531dee https://www.encodeproject.org/files/ENCFF600ELC/@@download/ENCFF600ELC.bigWig released s3://encode-public/2017/09/14/e051933c-d35b-488b-ae6c-01e6c93f250e/ENCFF600ELC.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF272WTO bigWig bigWig signal of unique reads dm6 ENCSR665ROL Control ChIP-seq /fly-donors/ENCDO138DXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31326/'], '@type': ['Target', 'Item'], 'name': 'CG2875-dmelanogaster', 'label': 'CG2875', '@id': '/targets/CG2875-dmelanogaster/', 'title': 'CG2875 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'e230d5a1-6f8a-4698-b032-16c47e169a2d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF984QVC/ 17779878 Kevin White, UChicago 735b4f5dda218f4365eaeab4c07c9d08 https://www.encodeproject.org/files/ENCFF272WTO/@@download/ENCFF272WTO.bigWig released s3://encode-public/2017/09/14/e0fe4c75-7bd0-40ff-8bc4-3734d4e1f9fa/ENCFF272WTO.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF381AXM fastq fastq reads ENCSR344EOM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/29842/'], '@type': ['Target', 'Item'], 'name': 'TFCP2L1-human', 'label': 'TFCP2L1', '@id': '/targets/TFCP2L1-human/', 'title': 'TFCP2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '7e41d598-e6c8-4903-be83-c3afdace7991', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF338QOE/ 2366411100 Michael Snyder, Stanford c7438a3093e350c392fe9db5178f92f5 https://www.encodeproject.org/files/ENCFF381AXM/@@download/ENCFF381AXM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/a3241bb7-783d-4a88-ae96-db9d2195a820/ENCFF381AXM.fastq.gz mild to moderate bottlenecking ENCFF338QOE fastq fastq reads ENCSR344EOM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/29842/'], '@type': ['Target', 'Item'], 'name': 'TFCP2L1-human', 'label': 'TFCP2L1', '@id': '/targets/TFCP2L1-human/', 'title': 'TFCP2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '7e41d598-e6c8-4903-be83-c3afdace7991', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF381AXM/ 2518442888 Michael Snyder, Stanford ac80e2c6b15467fb645cff35cc4d6d9a https://www.encodeproject.org/files/ENCFF338QOE/@@download/ENCFF338QOE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/d7f5ab28-3ff3-43ab-a2f1-300ccd7b0079/ENCFF338QOE.fastq.gz mild to moderate bottlenecking ENCFF664MCK bam bam alignments GRCh38 ENCSR344EOM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/29842/'], '@type': ['Target', 'Item'], 'name': 'TFCP2L1-human', 'label': 'TFCP2L1', '@id': '/targets/TFCP2L1-human/', 'title': 'TFCP2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '7e41d598-e6c8-4903-be83-c3afdace7991', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF381AXM/, /files/ENCFF338QOE/ 3317103453 ENCODE Processing Pipeline cd04e939411e7b7af08cca73ed837cc3 https://www.encodeproject.org/files/ENCFF664MCK/@@download/ENCFF664MCK.bam released s3://encode-public/2020/04/20/7ca405ed-9483-4f72-ac19-2858e57503b0/ENCFF664MCK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF532TYR bam bam unfiltered alignments GRCh38 ENCSR344EOM Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/29842/'], '@type': ['Target', 'Item'], 'name': 'TFCP2L1-human', 'label': 'TFCP2L1', '@id': '/targets/TFCP2L1-human/', 'title': 'TFCP2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '7e41d598-e6c8-4903-be83-c3afdace7991', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF381AXM/, /files/ENCFF338QOE/ 4637289213 ENCODE Processing Pipeline ae9e4d0fbcad398e0a31b970769bd488 https://www.encodeproject.org/files/ENCFF532TYR/@@download/ENCFF532TYR.bam released s3://encode-public/2020/04/20/d3af9f37-bfae-4c12-968e-0c9f9f4557a2/ENCFF532TYR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF775XBQ fastq fastq reads ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF511JSA/ 1383789212 Michael Snyder, Stanford ba563c7160c6e40d82aa3f4e1ba2523a SRA:SRR6213848 https://www.encodeproject.org/files/ENCFF775XBQ/@@download/ENCFF775XBQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/de5be3b0-8430-4ecf-b069-65f016f6de6e/ENCFF775XBQ.fastq.gz low read depth ENCFF511JSA fastq fastq reads ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF775XBQ/ 1379965108 Michael Snyder, Stanford 15a64fa369867b7674f40024dd939e81 SRA:SRR6213848 https://www.encodeproject.org/files/ENCFF511JSA/@@download/ENCFF511JSA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/b4d7458a-3af5-4d72-a057-0b363180dd03/ENCFF511JSA.fastq.gz low read depth ENCFF520IRT bam bam unfiltered alignments GRCh38 ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF511JSA/, /files/ENCFF643CGH/, /files/ENCFF775XBQ/ 3155104865 ENCODE Processing Pipeline dae32a04bf2c554016963b130263ee5b https://www.encodeproject.org/files/ENCFF520IRT/@@download/ENCFF520IRT.bam released s3://encode-public/2016/05/06/b9e160e8-6d76-4e44-ade5-ceb368816fbd/ENCFF520IRT.bam ENCODE3 GRCh38 archived low read depth ENCFF418LUT bam bam alignments GRCh38 ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF511JSA/, /files/ENCFF643CGH/, /files/ENCFF775XBQ/ 2667732361 ENCODE Processing Pipeline cb19f53955cafd871ef20ad6cfe28100 https://www.encodeproject.org/files/ENCFF418LUT/@@download/ENCFF418LUT.bam released s3://encode-public/2016/05/06/d90f3a4d-db9b-4b28-854d-577ad5e19181/ENCFF418LUT.bam ENCODE3 GRCh38 archived low read depth ENCFF386NTK bam bam unfiltered alignments hg19 ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF511JSA/, /files/ENCFF807MUK/, /files/ENCFF775XBQ/ 3150688719 ENCODE Processing Pipeline 766a5816b697eed804d496c00f12eaa7 https://www.encodeproject.org/files/ENCFF386NTK/@@download/ENCFF386NTK.bam released s3://encode-public/2016/12/06/2322a57d-0c0c-45f8-a708-99e293e1c8aa/ENCFF386NTK.bam ENCODE3 hg19 archived low read depth ENCFF267XAF bam bam alignments hg19 ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF511JSA/, /files/ENCFF807MUK/, /files/ENCFF775XBQ/ 2663709646 ENCODE Processing Pipeline e7301392741808d0e6150928d02dfadd https://www.encodeproject.org/files/ENCFF267XAF/@@download/ENCFF267XAF.bam released s3://encode-public/2016/12/06/9cc66ca8-25e9-48cf-a10f-aebfec5f1e9f/ENCFF267XAF.bam ENCODE3 hg19 archived low read depth ENCFF187AJW bam bam unfiltered alignments GRCh38 ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF775XBQ/, /files/ENCFF511JSA/ 3142441716 ENCODE Processing Pipeline ee74b1f433fd260700d21f968e8749bc https://www.encodeproject.org/files/ENCFF187AJW/@@download/ENCFF187AJW.bam released s3://encode-public/2020/06/02/10bdf601-5f00-45ef-9aa5-d8221289297e/ENCFF187AJW.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF164BXK bam bam alignments GRCh38 ENCSR567EKU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF775XBQ/, /files/ENCFF511JSA/ 2617419417 ENCODE Processing Pipeline 5545d9a348d7252bd5c4ced6d82a161b https://www.encodeproject.org/files/ENCFF164BXK/@@download/ENCFF164BXK.bam released s3://encode-public/2020/06/02/fe3f1cd6-21ae-46a4-a933-60ad1d499458/ENCFF164BXK.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF237SIT fastq fastq reads ENCSR388HZU Control ChIP-seq /fly-donors/ENCDO413SHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/192508/'], '@type': ['Target', 'Item'], 'name': 'CG5180-dmelanogaster', 'label': 'CG5180', '@id': '/targets/CG5180-dmelanogaster/', 'title': 'CG5180 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'd230424f-a84b-4d87-bc87-8b34ba922f36', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 788285479 Kevin White, UChicago 36a87b7e2d5b68f1197736e1b63a48ae https://www.encodeproject.org/files/ENCFF237SIT/@@download/ENCFF237SIT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/510677d9-5c70-465e-9d56-bd1fbbf7be5b/ENCFF237SIT.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF454XMX bam bam alignments dm3 ENCSR388HZU Control ChIP-seq /fly-donors/ENCDO413SHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/192508/'], '@type': ['Target', 'Item'], 'name': 'CG5180-dmelanogaster', 'label': 'CG5180', '@id': '/targets/CG5180-dmelanogaster/', 'title': 'CG5180 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'd230424f-a84b-4d87-bc87-8b34ba922f36', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF237SIT/ 1066793271 Kevin White, UChicago 97253a8c7421fb8438afb2f9149b1efc https://www.encodeproject.org/files/ENCFF454XMX/@@download/ENCFF454XMX.bam released s3://encode-public/2017/09/12/8a76cb26-08ad-467e-94ca-78c06a62808f/ENCFF454XMX.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF005VYV bam bam alignments dm6 ENCSR388HZU Control ChIP-seq /fly-donors/ENCDO413SHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/192508/'], '@type': ['Target', 'Item'], 'name': 'CG5180-dmelanogaster', 'label': 'CG5180', '@id': '/targets/CG5180-dmelanogaster/', 'title': 'CG5180 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'd230424f-a84b-4d87-bc87-8b34ba922f36', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF237SIT/ 1058174361 Kevin White, UChicago d63b76d447b61679425f74c56cc28106 https://www.encodeproject.org/files/ENCFF005VYV/@@download/ENCFF005VYV.bam released s3://encode-public/2017/09/13/87a0e98b-a34e-4edc-818f-f026566ea90f/ENCFF005VYV.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF010CKC bigWig bigWig read-depth normalized signal dm3 ENCSR388HZU Control ChIP-seq /fly-donors/ENCDO413SHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/192508/'], '@type': ['Target', 'Item'], 'name': 'CG5180-dmelanogaster', 'label': 'CG5180', '@id': '/targets/CG5180-dmelanogaster/', 'title': 'CG5180 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'd230424f-a84b-4d87-bc87-8b34ba922f36', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF454XMX/ 15409506 Kevin White, UChicago fa27c1d9894cc2316c9938e81ed37228 https://www.encodeproject.org/files/ENCFF010CKC/@@download/ENCFF010CKC.bigWig released s3://encode-public/2017/09/13/c0cc0080-5592-4612-902a-87008521c011/ENCFF010CKC.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF074XJI bigWig bigWig signal of unique reads dm3 ENCSR388HZU Control ChIP-seq /fly-donors/ENCDO413SHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/192508/'], '@type': ['Target', 'Item'], 'name': 'CG5180-dmelanogaster', 'label': 'CG5180', '@id': '/targets/CG5180-dmelanogaster/', 'title': 'CG5180 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'd230424f-a84b-4d87-bc87-8b34ba922f36', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF454XMX/ 15394371 Kevin White, UChicago bce47ca6ddde00c8fcb9095ec85ea5ef https://www.encodeproject.org/files/ENCFF074XJI/@@download/ENCFF074XJI.bigWig released s3://encode-public/2017/09/13/5472a9a3-945a-494e-8698-72b9276cddb8/ENCFF074XJI.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF423IOR bigWig bigWig read-depth normalized signal dm6 ENCSR388HZU Control ChIP-seq /fly-donors/ENCDO413SHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/192508/'], '@type': ['Target', 'Item'], 'name': 'CG5180-dmelanogaster', 'label': 'CG5180', '@id': '/targets/CG5180-dmelanogaster/', 'title': 'CG5180 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'd230424f-a84b-4d87-bc87-8b34ba922f36', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF005VYV/ 17628717 Kevin White, UChicago 3c1f87dae88b1b70e4700eacd6fff01b https://www.encodeproject.org/files/ENCFF423IOR/@@download/ENCFF423IOR.bigWig released s3://encode-public/2017/09/14/ca0f71ec-e27f-4ecf-8004-740c567f5d57/ENCFF423IOR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF930DYC bigWig bigWig signal of unique reads dm6 ENCSR388HZU Control ChIP-seq /fly-donors/ENCDO413SHN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/192508/'], '@type': ['Target', 'Item'], 'name': 'CG5180-dmelanogaster', 'label': 'CG5180', '@id': '/targets/CG5180-dmelanogaster/', 'title': 'CG5180 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'd230424f-a84b-4d87-bc87-8b34ba922f36', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF005VYV/ 17610570 Kevin White, UChicago aacd0adc7f3c3c982b2caecda1af45a8 https://www.encodeproject.org/files/ENCFF930DYC/@@download/ENCFF930DYC.bigWig released s3://encode-public/2017/09/14/e3685aa0-3239-4f25-b8a3-09d5dd4070fa/ENCFF930DYC.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF339NXD fastq fastq reads ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1372285592 Bradley Bernstein, Broad 0bf54286c3c26886c2fb3d84aaab6ad9 SRA:SRR5833036 https://www.encodeproject.org/files/ENCFF339NXD/@@download/ENCFF339NXD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/dab0e85c-01a9-4ae8-ba29-ed3e46561043/ENCFF339NXD.fastq.gz ENCFF202KOP fastq fastq reads ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1332705054 Bradley Bernstein, Broad 31a63a91cce3175229257e4fc2635364 SRA:SRR5833037 https://www.encodeproject.org/files/ENCFF202KOP/@@download/ENCFF202KOP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/40faa0a9-7670-4b2f-a2b5-ac0c592a8f54/ENCFF202KOP.fastq.gz ENCFF904JEL fastq fastq reads ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1756230492 Bradley Bernstein, Broad 4e156c2dbd8664fe8d08657a65a75042 SRA:SRR5833038 https://www.encodeproject.org/files/ENCFF904JEL/@@download/ENCFF904JEL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/dfac4871-0b08-4d4a-aefa-9cb52a37ca6d/ENCFF904JEL.fastq.gz ENCFF923WIL fastq fastq reads ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1760873034 Bradley Bernstein, Broad 60cdcd29f9d4a3c171f24f7d5acc8749 SRA:SRR5833039 https://www.encodeproject.org/files/ENCFF923WIL/@@download/ENCFF923WIL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/158ea063-7bb9-4b9b-be4d-f01d4729568d/ENCFF923WIL.fastq.gz ENCFF762RDC bam bam unfiltered alignments GRCh38 ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF202KOP/, /files/ENCFF339NXD/, /files/ENCFF643CGH/, /files/ENCFF904JEL/, /files/ENCFF923WIL/ 5732024022 ENCODE Processing Pipeline 1339670027e74fe04c04de181ddae37c https://www.encodeproject.org/files/ENCFF762RDC/@@download/ENCFF762RDC.bam released s3://encode-public/2016/10/27/fc666463-495e-467e-a8dd-dbe8b3562903/ENCFF762RDC.bam ENCODE3 GRCh38 archived ENCFF793DBX bam bam unfiltered alignments hg19 ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF202KOP/, /files/ENCFF339NXD/, /files/ENCFF807MUK/, /files/ENCFF904JEL/, /files/ENCFF923WIL/ 5715951402 ENCODE Processing Pipeline 4febf65fdba09400df94d141dd832dec https://www.encodeproject.org/files/ENCFF793DBX/@@download/ENCFF793DBX.bam released s3://encode-public/2016/10/27/9b3adb3a-76e8-4f86-8d2e-1f78fb2926fa/ENCFF793DBX.bam ENCODE3 hg19 archived ENCFF929HNA bam bam alignments hg19 ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF202KOP/, /files/ENCFF339NXD/, /files/ENCFF807MUK/, /files/ENCFF904JEL/, /files/ENCFF923WIL/ 4800387607 ENCODE Processing Pipeline 8a5bc73a88551ad664bfb0673319e041 https://www.encodeproject.org/files/ENCFF929HNA/@@download/ENCFF929HNA.bam released s3://encode-public/2016/10/27/73e366cf-2884-4121-8e88-d9fe21c8ba95/ENCFF929HNA.bam ENCODE3 hg19 archived ENCFF251KKG bam bam alignments GRCh38 ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF202KOP/, /files/ENCFF339NXD/, /files/ENCFF643CGH/, /files/ENCFF904JEL/, /files/ENCFF923WIL/ 4807226757 ENCODE Processing Pipeline c373e0a0551b41c1ba3782904e3cd988 https://www.encodeproject.org/files/ENCFF251KKG/@@download/ENCFF251KKG.bam released s3://encode-public/2016/10/27/ebc5618c-8269-47fc-95e0-76f2578f4b78/ENCFF251KKG.bam ENCODE3 GRCh38 archived ENCFF443GXI bam bam unfiltered alignments GRCh38 ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF923WIL/, /files/ENCFF339NXD/, /files/ENCFF202KOP/, /files/ENCFF904JEL/ 5803167965 ENCODE Processing Pipeline 9dd9a268af4defcba0739f4ab36dbf39 https://www.encodeproject.org/files/ENCFF443GXI/@@download/ENCFF443GXI.bam released s3://encode-public/2020/08/20/e5c5c326-e630-4b47-b4f0-a11974e1a1f1/ENCFF443GXI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF568QTU bam bam alignments GRCh38 ENCSR844YME Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF923WIL/, /files/ENCFF339NXD/, /files/ENCFF202KOP/, /files/ENCFF904JEL/ 4917768489 ENCODE Processing Pipeline 09f36e33688897e71fe30bec36cc23e1 https://www.encodeproject.org/files/ENCFF568QTU/@@download/ENCFF568QTU.bam released s3://encode-public/2020/08/20/6dda535e-167a-4af8-894d-294f03c900bc/ENCFF568QTU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF997GNJ fastq fastq reads ENCSR928HJI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF826TZA/ 2284359312 Michael Snyder, Stanford f2b32f13afa26aacdef6bd6510048b71 SRA:SRR14107003 https://www.encodeproject.org/files/ENCFF997GNJ/@@download/ENCFF997GNJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/ffa968d4-f52b-4fc4-a92c-0439f0afe64b/ENCFF997GNJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF826TZA fastq fastq reads ENCSR928HJI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF997GNJ/ 2504701593 Michael Snyder, Stanford a0d7b360e687847cbf59daf0b1397353 SRA:SRR14107003 https://www.encodeproject.org/files/ENCFF826TZA/@@download/ENCFF826TZA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/bb5e251f-79d2-4a55-a8c6-d2d95cd74171/ENCFF826TZA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF895VQL bam bam unfiltered alignments GRCh38 ENCSR928HJI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF997GNJ/, /files/ENCFF826TZA/ 4336847076 ENCODE Processing Pipeline 2195bd1f0c6eec7e8cd6664bfa9b8719 https://www.encodeproject.org/files/ENCFF895VQL/@@download/ENCFF895VQL.bam released s3://encode-public/2020/04/20/104bd922-20e6-4db6-a6a8-d23c8960fbd2/ENCFF895VQL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF917HFQ bam bam alignments GRCh38 ENCSR928HJI Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF997GNJ/, /files/ENCFF826TZA/ 2839065771 ENCODE Processing Pipeline 5e0700a1b788cf0083e961af4c47b5ae https://www.encodeproject.org/files/ENCFF917HFQ/@@download/ENCFF917HFQ.bam released s3://encode-public/2020/04/20/466a0276-6fe6-4c35-a2c8-eb2d3437c348/ENCFF917HFQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF346VXQ fastq fastq reads ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF903FDT/ 3178878980 Michael Snyder, Stanford 8175e26d9362fd2147d0ef6b8eef228c SRA:SRR6213838 https://www.encodeproject.org/files/ENCFF346VXQ/@@download/ENCFF346VXQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/b8bf795d-9b7a-4b28-ae0f-8b1af357f4f4/ENCFF346VXQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF903FDT fastq fastq reads ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF346VXQ/ 3700165305 Michael Snyder, Stanford f77d0f39006219070d68e5dae551a477 SRA:SRR6213838 https://www.encodeproject.org/files/ENCFF903FDT/@@download/ENCFF903FDT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/a8acbc90-5d42-4ff2-a820-514a706d1ae4/ENCFF903FDT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF859WFS bam bam unfiltered alignments GRCh38 ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF346VXQ/, /files/ENCFF903FDT/ 6272187178 ENCODE Processing Pipeline 48518de6e782843ff946456cc806a28d https://www.encodeproject.org/files/ENCFF859WFS/@@download/ENCFF859WFS.bam released s3://encode-public/2017/01/27/f5d0885a-6549-4a19-87c0-3fe0681c511b/ENCFF859WFS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF052DDM bam bam alignments GRCh38 ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF346VXQ/, /files/ENCFF903FDT/ 4698864394 ENCODE Processing Pipeline 44ef07423ff532ec7912a770840a2983 https://www.encodeproject.org/files/ENCFF052DDM/@@download/ENCFF052DDM.bam released s3://encode-public/2017/01/27/8a7a662d-7f08-4179-a249-03aa6742d490/ENCFF052DDM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF166BUE bam bam unfiltered alignments hg19 ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF346VXQ/, /files/ENCFF903FDT/ 6263860079 ENCODE Processing Pipeline 1ccb86055c1061300a01797b8d100e1d https://www.encodeproject.org/files/ENCFF166BUE/@@download/ENCFF166BUE.bam released s3://encode-public/2017/01/28/84a31bb4-fa89-4aad-a872-3d33d040012b/ENCFF166BUE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF662LAZ bam bam alignments hg19 ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF346VXQ/, /files/ENCFF903FDT/ 4690598453 ENCODE Processing Pipeline 12eb973e69f7a0f884e0272925858308 https://www.encodeproject.org/files/ENCFF662LAZ/@@download/ENCFF662LAZ.bam released s3://encode-public/2017/01/28/aea541c1-6c3d-45cb-a9dc-51f0f97ab5d8/ENCFF662LAZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF875MEO bam bam unfiltered alignments GRCh38 ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF346VXQ/, /files/ENCFF903FDT/ 6263396606 ENCODE Processing Pipeline da39cd16ac8f00e6cdb19da3011baa54 https://www.encodeproject.org/files/ENCFF875MEO/@@download/ENCFF875MEO.bam released s3://encode-public/2020/06/02/2239deb4-6993-4ce5-bfc9-b2859ce5982e/ENCFF875MEO.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF003DLR bam bam alignments GRCh38 ENCSR558QYH Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF346VXQ/, /files/ENCFF903FDT/ 4572967111 ENCODE Processing Pipeline 3d268214b916f9a17b05c5a98bfd7747 https://www.encodeproject.org/files/ENCFF003DLR/@@download/ENCFF003DLR.bam released s3://encode-public/2020/06/02/7c47bfbd-1424-4191-b25e-a1b1f28425a7/ENCFF003DLR.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF638HYS fastq fastq reads ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF716ODJ/ 2065971803 Michael Snyder, Stanford d5bfc696a5cb8ce087e6b27303f74533 SRA:SRR6213845 https://www.encodeproject.org/files/ENCFF638HYS/@@download/ENCFF638HYS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/33a0e066-16e5-4564-8a50-fbaa83b601ad/ENCFF638HYS.fastq.gz ENCFF716ODJ fastq fastq reads ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF638HYS/ 2039298278 Michael Snyder, Stanford 6efc3bd22c92ec16a49e36d41485812d SRA:SRR6213845 https://www.encodeproject.org/files/ENCFF716ODJ/@@download/ENCFF716ODJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/319319ed-c866-45d0-bdf5-fa6f815b328d/ENCFF716ODJ.fastq.gz ENCFF457RKG bam bam unfiltered alignments GRCh38 ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF716ODJ/, /files/ENCFF638HYS/, /files/ENCFF643CGH/ 4646625146 ENCODE Processing Pipeline 5056e63f60185e9b0eef966854696110 https://www.encodeproject.org/files/ENCFF457RKG/@@download/ENCFF457RKG.bam released s3://encode-public/2016/05/06/b81355dc-e2f9-455a-a298-79f6d4936703/ENCFF457RKG.bam ENCODE3 GRCh38 archived ENCFF811KEY bam bam alignments GRCh38 ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF716ODJ/, /files/ENCFF638HYS/, /files/ENCFF643CGH/ 3988169814 ENCODE Processing Pipeline 0098bf0e29cddf44b52645b4c1c38af2 https://www.encodeproject.org/files/ENCFF811KEY/@@download/ENCFF811KEY.bam released s3://encode-public/2016/05/06/6ebb3043-8d32-4d3f-9a1b-d2344efbe0f2/ENCFF811KEY.bam ENCODE3 GRCh38 archived ENCFF576MAZ bam bam unfiltered alignments hg19 ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF716ODJ/, /files/ENCFF638HYS/, /files/ENCFF807MUK/ 4637063367 ENCODE Processing Pipeline 95b024ea419c4abb6b65d8075e0d5ebc https://www.encodeproject.org/files/ENCFF576MAZ/@@download/ENCFF576MAZ.bam released s3://encode-public/2016/12/06/44c78d8c-ce1c-4739-936e-e5f0e1f60eb1/ENCFF576MAZ.bam ENCODE3 hg19 archived ENCFF230HKK bam bam alignments hg19 ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF716ODJ/, /files/ENCFF638HYS/, /files/ENCFF807MUK/ 3976111710 ENCODE Processing Pipeline b9277f3ba97c7e6f958aab454aa76169 https://www.encodeproject.org/files/ENCFF230HKK/@@download/ENCFF230HKK.bam released s3://encode-public/2016/12/06/691ec666-68fd-4c01-b510-7239d9c7248a/ENCFF230HKK.bam ENCODE3 hg19 archived ENCFF233FCA bam bam unfiltered alignments GRCh38 ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF638HYS/, /files/ENCFF716ODJ/ 4618300172 ENCODE Processing Pipeline 3a7d8a7365d48fdb37b18f97985212ac https://www.encodeproject.org/files/ENCFF233FCA/@@download/ENCFF233FCA.bam released s3://encode-public/2020/06/02/b6570736-d4e4-452c-bd67-9ccc78f7bc0e/ENCFF233FCA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF868EBP bam bam alignments GRCh38 ENCSR485ITK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF638HYS/, /files/ENCFF716ODJ/ 3896869109 ENCODE Processing Pipeline 40641a42b2038189b2e480016bf15f32 https://www.encodeproject.org/files/ENCFF868EBP/@@download/ENCFF868EBP.bam released s3://encode-public/2020/06/02/51984313-96d7-4e83-8d02-e8be77013936/ENCFF868EBP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF347NDJ fastq fastq reads ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF360CGI/ 2356684597 Michael Snyder, Stanford b070ee96703a595e318388a2f8f35465 SRA:SRR6214027 https://www.encodeproject.org/files/ENCFF347NDJ/@@download/ENCFF347NDJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/0cdc7bc8-a459-417b-9473-546bd4e4dd87/ENCFF347NDJ.fastq.gz ENCFF360CGI fastq fastq reads ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF347NDJ/ 2400632824 Michael Snyder, Stanford 401827da403f01e5ceeea44bca0de9c8 SRA:SRR6214027 https://www.encodeproject.org/files/ENCFF360CGI/@@download/ENCFF360CGI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/28e8c622-eb38-42df-9101-78fc8fe8bbc8/ENCFF360CGI.fastq.gz ENCFF858CSQ bam bam unfiltered alignments GRCh38 ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF360CGI/, /files/ENCFF347NDJ/ 5307940497 ENCODE Processing Pipeline 746fd43039b50e3443d322a06df5e70c https://www.encodeproject.org/files/ENCFF858CSQ/@@download/ENCFF858CSQ.bam released s3://encode-public/2016/05/06/80212a94-e4eb-44b0-9400-59c026ac3424/ENCFF858CSQ.bam ENCODE3 GRCh38 archived ENCFF702GSO bam bam alignments GRCh38 ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF360CGI/, /files/ENCFF347NDJ/ 4461720234 ENCODE Processing Pipeline ff345878ae23962af89bb6ee55d81d7b https://www.encodeproject.org/files/ENCFF702GSO/@@download/ENCFF702GSO.bam released s3://encode-public/2016/05/06/c86878d2-ad64-4f20-b1ae-458e2b1ca9b5/ENCFF702GSO.bam ENCODE3 GRCh38 archived ENCFF223GGN bam bam unfiltered alignments hg19 ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF360CGI/, /files/ENCFF347NDJ/ 5300077094 ENCODE Processing Pipeline 09afc6aba36e19fa13613ad6219c5ae1 https://www.encodeproject.org/files/ENCFF223GGN/@@download/ENCFF223GGN.bam released s3://encode-public/2016/12/06/f8bcbe92-f9ac-4a88-892a-dcf012b72be3/ENCFF223GGN.bam ENCODE3 hg19 archived ENCFF634EFZ bam bam alignments hg19 ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF360CGI/, /files/ENCFF347NDJ/ 4453102688 ENCODE Processing Pipeline 50e4b3d0f5d4d911b2060325764467c2 https://www.encodeproject.org/files/ENCFF634EFZ/@@download/ENCFF634EFZ.bam released s3://encode-public/2016/12/06/761f9658-af25-45b0-90c1-1ad3a9b34cb9/ENCFF634EFZ.bam ENCODE3 hg19 archived ENCFF423SQK bam bam unfiltered alignments GRCh38 ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF347NDJ/, /files/ENCFF360CGI/ 5290374334 ENCODE Processing Pipeline 372628ed1c3db041cc41f99d3fe3446d https://www.encodeproject.org/files/ENCFF423SQK/@@download/ENCFF423SQK.bam released s3://encode-public/2020/06/02/0f3c9f8b-d278-42e2-8b4d-dff7eb52cb00/ENCFF423SQK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF713KOJ bam bam alignments GRCh38 ENCSR728EBP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF347NDJ/, /files/ENCFF360CGI/ 4389996639 ENCODE Processing Pipeline e6cb7eb849c61c516377884748d3def6 https://www.encodeproject.org/files/ENCFF713KOJ/@@download/ENCFF713KOJ.bam released s3://encode-public/2020/06/02/23de95df-5d06-4d6d-ac88-bef7f0c0b526/ENCFF713KOJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF781KOT fastq fastq reads ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 147123802 Michael Snyder, Stanford b3c0781df08022c067f19cb8a39ad112 https://www.encodeproject.org/files/ENCFF781KOT/@@download/ENCFF781KOT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/3e6c8723-3f7a-4d9c-a135-64cedd140b4d/ENCFF781KOT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF565BTP fastq fastq reads ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 155752769 Michael Snyder, Stanford 6d5a9a23db4782d722bc2bc4462ea1d1 https://www.encodeproject.org/files/ENCFF565BTP/@@download/ENCFF565BTP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/b222c3a6-b4a9-48b1-9fbe-c54ef48d6469/ENCFF565BTP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF550OAO bam bam alignments ce10 ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF781KOT/, /files/ENCFF565BTP/, /files/ENCFF987UMF/ 398766359 Kevin White, UChicago 4d31dddd107c4c52242da19dbc18e3a7 https://www.encodeproject.org/files/ENCFF550OAO/@@download/ENCFF550OAO.bam released s3://encode-public/2017/04/27/73de78e9-9c34-4028-a277-de72b06a99d3/ENCFF550OAO.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF265IXE bam bam alignments ce11 ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF781KOT/, /files/ENCFF565BTP/, /files/ENCFF586MOL/ 399214034 Kevin White, UChicago 56d8c54897861cc9f3b4f531fdd4d5b2 https://www.encodeproject.org/files/ENCFF265IXE/@@download/ENCFF265IXE.bam released s3://encode-public/2017/04/27/d7750b8f-a489-42f3-98c3-21e97e9cc048/ENCFF265IXE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF067NNS bigWig bigWig signal of unique reads ce10 ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF550OAO/ 10023866 Kevin White, UChicago 183d6f954720822a0b94ee3095310454 https://www.encodeproject.org/files/ENCFF067NNS/@@download/ENCFF067NNS.bigWig released s3://encode-public/2017/04/29/e7554346-f26d-42f9-9607-33068bcb9137/ENCFF067NNS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF664PIX bigWig bigWig read-depth normalized signal ce10 ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF550OAO/ 10011180 Kevin White, UChicago 689f19a578d476025d57c41527d22d15 https://www.encodeproject.org/files/ENCFF664PIX/@@download/ENCFF664PIX.bigWig released s3://encode-public/2017/04/29/67132b55-6a2c-4a6e-99dc-275b780de1f2/ENCFF664PIX.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF309UYZ bigWig bigWig signal of unique reads ce11 ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF265IXE/ 10017665 Kevin White, UChicago 565942b5b8fd9e200480dabd0ee095a6 https://www.encodeproject.org/files/ENCFF309UYZ/@@download/ENCFF309UYZ.bigWig released s3://encode-public/2017/04/29/732ac789-aa21-4322-8364-20353b161f06/ENCFF309UYZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF571TAB bigWig bigWig read-depth normalized signal ce11 ENCSR541IIQ Control ChIP-seq /worm-donors/ENCDO938MIP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178071/'], '@type': ['Target', 'Item'], 'name': 'mbf-1-celegans', 'label': 'mbf-1', '@id': '/targets/mbf-1-celegans/', 'title': 'mbf-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0f005e43-4283-4a8d-aaea-545cca1d139d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF265IXE/ 9995842 Kevin White, UChicago 4ef09989948f15b8c45caacc31d4228f https://www.encodeproject.org/files/ENCFF571TAB/@@download/ENCFF571TAB.bigWig released s3://encode-public/2017/04/29/d5a8307d-6764-42d2-9df2-8ed41e20f75b/ENCFF571TAB.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF136HZY fastq fastq reads ENCSR118IHI Control ChIP-seq /fly-donors/ENCDO529HMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33535/'], '@type': ['Target', 'Item'], 'name': 'CG34406-dmelanogaster', 'label': 'CG34406', '@id': '/targets/CG34406-dmelanogaster/', 'title': 'CG34406 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ae8c53b-5466-4b45-ad9b-115abea97b5f', 'status': 'released'} dm3 2L 3166817 3189997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 631138907 Kevin White, UChicago 893b212ba51bf364aad37f609162b77d https://www.encodeproject.org/files/ENCFF136HZY/@@download/ENCFF136HZY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/012034b9-acd4-4595-b59d-345228acce8a/ENCFF136HZY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF544ZSX bam bam alignments dm3 ENCSR118IHI Control ChIP-seq /fly-donors/ENCDO529HMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33535/'], '@type': ['Target', 'Item'], 'name': 'CG34406-dmelanogaster', 'label': 'CG34406', '@id': '/targets/CG34406-dmelanogaster/', 'title': 'CG34406 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ae8c53b-5466-4b45-ad9b-115abea97b5f', 'status': 'released'} dm3 2L 3166817 3189997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF136HZY/ 751474891 Kevin White, UChicago eaa4fb300069854c28d1cfe5b6eda436 https://www.encodeproject.org/files/ENCFF544ZSX/@@download/ENCFF544ZSX.bam released s3://encode-public/2016/04/10/95000e7c-5799-4226-8a1c-bf45139be096/ENCFF544ZSX.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF023SMY bigWig bigWig read-depth normalized signal dm3 ENCSR118IHI Control ChIP-seq /fly-donors/ENCDO529HMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33535/'], '@type': ['Target', 'Item'], 'name': 'CG34406-dmelanogaster', 'label': 'CG34406', '@id': '/targets/CG34406-dmelanogaster/', 'title': 'CG34406 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ae8c53b-5466-4b45-ad9b-115abea97b5f', 'status': 'released'} dm3 2L 3166817 3189997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF544ZSX/ 15153176 Kevin White, UChicago ac58f6bc57e29802182761d81db15f8f https://www.encodeproject.org/files/ENCFF023SMY/@@download/ENCFF023SMY.bigWig released s3://encode-public/2016/04/11/f900a35d-c6e8-47e6-a570-035fe55b1beb/ENCFF023SMY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF075FCE bigWig bigWig signal of unique reads dm3 ENCSR118IHI Control ChIP-seq /fly-donors/ENCDO529HMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33535/'], '@type': ['Target', 'Item'], 'name': 'CG34406-dmelanogaster', 'label': 'CG34406', '@id': '/targets/CG34406-dmelanogaster/', 'title': 'CG34406 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ae8c53b-5466-4b45-ad9b-115abea97b5f', 'status': 'released'} dm3 2L 3166817 3189997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF544ZSX/ 15138871 Kevin White, UChicago 2ef69b1f5e2383afe1ff7fcb3b266102 https://www.encodeproject.org/files/ENCFF075FCE/@@download/ENCFF075FCE.bigWig released s3://encode-public/2016/04/11/2c7bfad9-e404-4eca-89eb-628e6eb9217b/ENCFF075FCE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF777IGI bam bam alignments dm6 ENCSR118IHI Control ChIP-seq /fly-donors/ENCDO529HMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33535/'], '@type': ['Target', 'Item'], 'name': 'CG34406-dmelanogaster', 'label': 'CG34406', '@id': '/targets/CG34406-dmelanogaster/', 'title': 'CG34406 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ae8c53b-5466-4b45-ad9b-115abea97b5f', 'status': 'released'} dm3 2L 3166817 3189997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF136HZY/ 747298041 Kevin White, UChicago ae05b1ecab8227e89fa97b9d191900e0 https://www.encodeproject.org/files/ENCFF777IGI/@@download/ENCFF777IGI.bam released s3://encode-public/2016/04/21/9721794b-9bb3-4461-9141-7da17c53a6fb/ENCFF777IGI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF930ECB bigWig bigWig read-depth normalized signal dm6 ENCSR118IHI Control ChIP-seq /fly-donors/ENCDO529HMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33535/'], '@type': ['Target', 'Item'], 'name': 'CG34406-dmelanogaster', 'label': 'CG34406', '@id': '/targets/CG34406-dmelanogaster/', 'title': 'CG34406 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ae8c53b-5466-4b45-ad9b-115abea97b5f', 'status': 'released'} dm3 2L 3166817 3189997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF777IGI/ 17249399 Kevin White, UChicago 216f9b417fb4fd869f675fb9c5883e19 https://www.encodeproject.org/files/ENCFF930ECB/@@download/ENCFF930ECB.bigWig released s3://encode-public/2016/06/20/274c8c85-12ec-4558-8d40-eef723d17c42/ENCFF930ECB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF238HYA bigWig bigWig signal of unique reads dm6 ENCSR118IHI Control ChIP-seq /fly-donors/ENCDO529HMW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33535/'], '@type': ['Target', 'Item'], 'name': 'CG34406-dmelanogaster', 'label': 'CG34406', '@id': '/targets/CG34406-dmelanogaster/', 'title': 'CG34406 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1ae8c53b-5466-4b45-ad9b-115abea97b5f', 'status': 'released'} dm3 2L 3166817 3189997 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF777IGI/ 17229708 Kevin White, UChicago 11dba77ad5d47a3164f7e00a829be1ee https://www.encodeproject.org/files/ENCFF238HYA/@@download/ENCFF238HYA.bigWig released s3://encode-public/2016/06/20/7935d85b-851c-40a4-aef7-db6ae42447a9/ENCFF238HYA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF839WBY fastq fastq reads ENCSR628ZUK Control ChIP-seq /fly-donors/ENCDO273MGX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34725/'], '@type': ['Target', 'Item'], 'name': 'CG16815-dmelanogaster', 'label': 'CG16815', '@id': '/targets/CG16815-dmelanogaster/', 'title': 'CG16815 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '665a0d21-a32e-4f48-aaba-103412392bb1', 'status': 'released'} dm3 2L 13221061 13239120 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1608998402 Kevin White, UChicago d856b76233dd5d669f7bcc9048d9d88a https://www.encodeproject.org/files/ENCFF839WBY/@@download/ENCFF839WBY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/6afe7193-f7ef-4813-bb40-0de97b1e96b9/ENCFF839WBY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF242WXD bam bam alignments dm3 ENCSR628ZUK Control ChIP-seq /fly-donors/ENCDO273MGX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34725/'], '@type': ['Target', 'Item'], 'name': 'CG16815-dmelanogaster', 'label': 'CG16815', '@id': '/targets/CG16815-dmelanogaster/', 'title': 'CG16815 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '665a0d21-a32e-4f48-aaba-103412392bb1', 'status': 'released'} dm3 2L 13221061 13239120 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF839WBY/, /files/ENCFF059UHX/ 2215998442 Kevin White, UChicago 9f7aea29d312d3e3846fd6fc27a52ebd https://www.encodeproject.org/files/ENCFF242WXD/@@download/ENCFF242WXD.bam released s3://encode-public/2016/12/21/633e2c65-09e3-467e-8f08-98961ec8ec4e/ENCFF242WXD.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF939CXD bam bam alignments dm6 ENCSR628ZUK Control ChIP-seq /fly-donors/ENCDO273MGX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34725/'], '@type': ['Target', 'Item'], 'name': 'CG16815-dmelanogaster', 'label': 'CG16815', '@id': '/targets/CG16815-dmelanogaster/', 'title': 'CG16815 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '665a0d21-a32e-4f48-aaba-103412392bb1', 'status': 'released'} dm3 2L 13221061 13239120 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF839WBY/, /files/ENCFF479RCH/ 2205346698 Kevin White, UChicago a130df873db7db141fc87332b557decd https://www.encodeproject.org/files/ENCFF939CXD/@@download/ENCFF939CXD.bam released s3://encode-public/2016/12/22/05ce95da-0702-4f5e-9f9b-23574712b90c/ENCFF939CXD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF512LBG bigWig bigWig read-depth normalized signal dm3 ENCSR628ZUK Control ChIP-seq /fly-donors/ENCDO273MGX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34725/'], '@type': ['Target', 'Item'], 'name': 'CG16815-dmelanogaster', 'label': 'CG16815', '@id': '/targets/CG16815-dmelanogaster/', 'title': 'CG16815 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '665a0d21-a32e-4f48-aaba-103412392bb1', 'status': 'released'} dm3 2L 13221061 13239120 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF242WXD/ 15653016 Kevin White, UChicago 2b830e6bd55e91e36ccf07a62d83f2e3 https://www.encodeproject.org/files/ENCFF512LBG/@@download/ENCFF512LBG.bigWig released s3://encode-public/2017/01/03/c433d082-49d7-497f-8f50-c75de0fcbbbf/ENCFF512LBG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF078IRW bigWig bigWig signal of unique reads dm3 ENCSR628ZUK Control ChIP-seq /fly-donors/ENCDO273MGX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34725/'], '@type': ['Target', 'Item'], 'name': 'CG16815-dmelanogaster', 'label': 'CG16815', '@id': '/targets/CG16815-dmelanogaster/', 'title': 'CG16815 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '665a0d21-a32e-4f48-aaba-103412392bb1', 'status': 'released'} dm3 2L 13221061 13239120 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF242WXD/ 15730843 Kevin White, UChicago 6253b4f1db6a8618a9c55dacaa86ed67 https://www.encodeproject.org/files/ENCFF078IRW/@@download/ENCFF078IRW.bigWig released s3://encode-public/2017/01/03/afc5fd82-b14b-4d4c-b815-7b396a5039c8/ENCFF078IRW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF299JRT bigWig bigWig read-depth normalized signal dm6 ENCSR628ZUK Control ChIP-seq /fly-donors/ENCDO273MGX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34725/'], '@type': ['Target', 'Item'], 'name': 'CG16815-dmelanogaster', 'label': 'CG16815', '@id': '/targets/CG16815-dmelanogaster/', 'title': 'CG16815 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '665a0d21-a32e-4f48-aaba-103412392bb1', 'status': 'released'} dm3 2L 13221061 13239120 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF939CXD/ 17599221 Kevin White, UChicago 153e05b441700c04a566d54dd7ae54cd https://www.encodeproject.org/files/ENCFF299JRT/@@download/ENCFF299JRT.bigWig released s3://encode-public/2017/01/03/159fed59-0356-4326-b1f9-2b78b27ef876/ENCFF299JRT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF262AJJ bigWig bigWig signal of unique reads dm6 ENCSR628ZUK Control ChIP-seq /fly-donors/ENCDO273MGX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34725/'], '@type': ['Target', 'Item'], 'name': 'CG16815-dmelanogaster', 'label': 'CG16815', '@id': '/targets/CG16815-dmelanogaster/', 'title': 'CG16815 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '665a0d21-a32e-4f48-aaba-103412392bb1', 'status': 'released'} dm3 2L 13221061 13239120 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF939CXD/ 17725372 Kevin White, UChicago 3257f41326f01815570e17ad44353ca4 https://www.encodeproject.org/files/ENCFF262AJJ/@@download/ENCFF262AJJ.bigWig released s3://encode-public/2017/01/03/8fdb0c2b-9e3e-49d0-b878-1436aa0327cc/ENCFF262AJJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF243IDE fastq fastq reads ENCSR816YLP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF679URC/ 2859266072 Michael Snyder, Stanford 44a93366ebf3b1e5b2e5ebf665f43331 SRA:SRR14850303 https://www.encodeproject.org/files/ENCFF243IDE/@@download/ENCFF243IDE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/5d261b45-5610-4f70-91d1-eb2a22b5b5b6/ENCFF243IDE.fastq.gz ENCFF679URC fastq fastq reads ENCSR816YLP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF243IDE/ 3383179484 Michael Snyder, Stanford 44bccbecd50092764679f9881813d12c SRA:SRR14850303 https://www.encodeproject.org/files/ENCFF679URC/@@download/ENCFF679URC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/0c1d7cab-c1d3-47b2-ad5a-bfdc23759e57/ENCFF679URC.fastq.gz ENCFF651XOI bam bam alignments GRCh38 ENCSR816YLP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF243IDE/, /files/ENCFF679URC/ 4893162049 ENCODE Processing Pipeline 7fca2c5326a5207796a1c3902070dff8 https://www.encodeproject.org/files/ENCFF651XOI/@@download/ENCFF651XOI.bam released s3://encode-public/2020/05/15/af19af51-931a-47cd-8c63-3ee9f82a3278/ENCFF651XOI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF740OIL bam bam unfiltered alignments GRCh38 ENCSR816YLP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF243IDE/, /files/ENCFF679URC/ 6166567477 ENCODE Processing Pipeline 7f5edc02e8b4a50b212876bb56011ece https://www.encodeproject.org/files/ENCFF740OIL/@@download/ENCFF740OIL.bam released s3://encode-public/2020/05/15/fb48d11d-8297-4879-bdeb-570d6d36b365/ENCFF740OIL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF769JUL fastq fastq reads ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 666746526 Tim Reddy, Duke 43f81591fb3c48cf1e80840cf563964a SRA:SRR5093244 https://www.encodeproject.org/files/ENCFF769JUL/@@download/ENCFF769JUL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/6445b5c6-7085-4d84-9943-fb4a6499b9bf/ENCFF769JUL.fastq.gz ENCFF149USB fastq fastq reads ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 573203540 Tim Reddy, Duke afd8dfdefd89ead946cebf8c2e9153d2 SRA:SRR5093243 https://www.encodeproject.org/files/ENCFF149USB/@@download/ENCFF149USB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/468ec302-136d-49c5-84ed-956cf9650abb/ENCFF149USB.fastq.gz ENCFF712VIW fastq fastq reads ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 771480296 Tim Reddy, Duke 444ca542d1901f753557843419deb874 SRA:SRR5093242 https://www.encodeproject.org/files/ENCFF712VIW/@@download/ENCFF712VIW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/aafd817c-aeb7-4480-94ee-008960cc8561/ENCFF712VIW.fastq.gz ENCFF636KDT bam bam alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF769JUL/ 744576372 Tim Reddy, Duke dc63d77d5d795f87857132c267f33177 https://www.encodeproject.org/files/ENCFF636KDT/@@download/ENCFF636KDT.bam released s3://encode-public/2016/10/19/15e92665-be9b-47ad-9ab6-243f1045efc1/ENCFF636KDT.bam Lab custom GRCh38 archived ENCFF853VDT bam bam alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF149USB/ 652516600 Tim Reddy, Duke 4768bc6bc65b31ddb0c6ebea18310ad4 https://www.encodeproject.org/files/ENCFF853VDT/@@download/ENCFF853VDT.bam released s3://encode-public/2016/10/19/11a49f04-98b2-4b41-bce2-b47d36b892ab/ENCFF853VDT.bam Lab custom GRCh38 archived ENCFF242HOG bam bam alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF712VIW/ 848272488 Tim Reddy, Duke 765b9037994d735a19c5715dd62b09cc https://www.encodeproject.org/files/ENCFF242HOG/@@download/ENCFF242HOG.bam released s3://encode-public/2016/10/19/9dc03f6f-528a-4b40-827b-3a8a3664413f/ENCFF242HOG.bam Lab custom GRCh38 archived ENCFF204PJJ bam bam unfiltered alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF769JUL/, /files/ENCFF110MCL/ 911291521 ENCODE Processing Pipeline b2af98cb0d2cc2e8d25f45438e3532a2 https://www.encodeproject.org/files/ENCFF204PJJ/@@download/ENCFF204PJJ.bam released s3://encode-public/2020/11/13/d6f358a9-5b77-4ce3-a5fe-dead1e0453be/ENCFF204PJJ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF060JXI bam bam alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF149USB/ 664579388 ENCODE Processing Pipeline e406be5e99b25ba0a103dffb22e1f4d0 https://www.encodeproject.org/files/ENCFF060JXI/@@download/ENCFF060JXI.bam released s3://encode-public/2020/11/13/8e9526ff-19c0-4636-8bc2-4bc4f0241833/ENCFF060JXI.bam ENCODE4 v1.6.1 GRCh38 released ENCFF391GUM bam bam alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF712VIW/ 889570563 ENCODE Processing Pipeline 941dc61cf904b17497e907c52a1cf3a1 https://www.encodeproject.org/files/ENCFF391GUM/@@download/ENCFF391GUM.bam released s3://encode-public/2020/11/13/e856bb0b-0459-4c8c-b02e-ca032964da5e/ENCFF391GUM.bam ENCODE4 v1.6.1 GRCh38 released ENCFF219DID bam bam unfiltered alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF149USB/ 822409283 ENCODE Processing Pipeline ccb3bd8de0420504972e955c8ea7d115 https://www.encodeproject.org/files/ENCFF219DID/@@download/ENCFF219DID.bam released s3://encode-public/2020/11/13/2b025247-9422-4d2a-9aab-eed5ada37611/ENCFF219DID.bam ENCODE4 v1.6.1 GRCh38 released ENCFF021NKH bam bam unfiltered alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF712VIW/ 1043907140 ENCODE Processing Pipeline bd5d01d1fee298324896423153d7a522 https://www.encodeproject.org/files/ENCFF021NKH/@@download/ENCFF021NKH.bam released s3://encode-public/2020/11/13/d0c45ced-5b17-4222-ba99-9f65b89d00ea/ENCFF021NKH.bam ENCODE4 v1.6.1 GRCh38 released ENCFF320CLW bam bam alignments GRCh38 ENCSR005CRY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF769JUL/, /files/ENCFF110MCL/ 780839608 ENCODE Processing Pipeline ff93889b6bad9a67ef9477028e3e4f0f https://www.encodeproject.org/files/ENCFF320CLW/@@download/ENCFF320CLW.bam released s3://encode-public/2020/11/13/43bc210b-8b36-4ca6-8a5a-7672a8237586/ENCFF320CLW.bam ENCODE4 v1.6.1 GRCh38 released ENCFF628OEX fastq fastq reads ENCSR315TRH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7019/'], '@type': ['Target', 'Item'], 'name': 'TFAM-human', 'label': 'TFAM', '@id': '/targets/TFAM-human/', 'title': 'TFAM (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c51410a4-4615-4b84-997c-ea36fc1901f9', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF957TYP/ 2735353857 Michael Snyder, Stanford d38d218c3a093084e3010c08a154177d SRA:SRR14832551 https://www.encodeproject.org/files/ENCFF628OEX/@@download/ENCFF628OEX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/21/380f4702-533d-481c-a930-c6657dbeb875/ENCFF628OEX.fastq.gz mild to moderate bottlenecking ENCFF957TYP fastq fastq reads ENCSR315TRH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7019/'], '@type': ['Target', 'Item'], 'name': 'TFAM-human', 'label': 'TFAM', '@id': '/targets/TFAM-human/', 'title': 'TFAM (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c51410a4-4615-4b84-997c-ea36fc1901f9', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF628OEX/ 3275965961 Michael Snyder, Stanford d34012b59e90ff3f11dbef4baa7412fb SRA:SRR14832551 https://www.encodeproject.org/files/ENCFF957TYP/@@download/ENCFF957TYP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/22/42a100b6-3730-4f06-8a61-5f56ca1be7cd/ENCFF957TYP.fastq.gz mild to moderate bottlenecking ENCFF615WXR bam bam alignments GRCh38 ENCSR315TRH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7019/'], '@type': ['Target', 'Item'], 'name': 'TFAM-human', 'label': 'TFAM', '@id': '/targets/TFAM-human/', 'title': 'TFAM (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c51410a4-4615-4b84-997c-ea36fc1901f9', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF628OEX/, /files/ENCFF957TYP/ 4318232716 ENCODE Processing Pipeline d13f0697fdb7231ccdd5db1706100dc7 https://www.encodeproject.org/files/ENCFF615WXR/@@download/ENCFF615WXR.bam released s3://encode-public/2020/05/15/d89469f0-d4e4-4030-945a-851326e80826/ENCFF615WXR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF413PWN bam bam unfiltered alignments GRCh38 ENCSR315TRH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7019/'], '@type': ['Target', 'Item'], 'name': 'TFAM-human', 'label': 'TFAM', '@id': '/targets/TFAM-human/', 'title': 'TFAM (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c51410a4-4615-4b84-997c-ea36fc1901f9', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF628OEX/, /files/ENCFF957TYP/ 5826110471 ENCODE Processing Pipeline 651d792f47a694a71e4c700e4f7cae89 https://www.encodeproject.org/files/ENCFF413PWN/@@download/ENCFF413PWN.bam released s3://encode-public/2020/05/15/81696841-3450-469e-ae33-fa086228c35b/ENCFF413PWN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF331QXM fastq fastq reads ENCSR565WHH Control ChIP-seq /fly-donors/ENCDO311LGL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35843/'], '@type': ['Target', 'Item'], 'name': 'rgr-dmelanogaster', 'label': 'rgr', '@id': '/targets/rgr-dmelanogaster/', 'title': 'rgr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3f3ecdc7-1ddd-4b6c-b16c-5ec042e4b98b', 'status': 'released'} dm3 2R 8595587 8618440 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1061782246 Kevin White, UChicago 794854cb916c181cd675e83557dc18eb https://www.encodeproject.org/files/ENCFF331QXM/@@download/ENCFF331QXM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/02/546209c2-d66e-4798-af11-1b84990b8a61/ENCFF331QXM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF707LKV bam bam alignments dm3 ENCSR565WHH Control ChIP-seq /fly-donors/ENCDO311LGL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35843/'], '@type': ['Target', 'Item'], 'name': 'rgr-dmelanogaster', 'label': 'rgr', '@id': '/targets/rgr-dmelanogaster/', 'title': 'rgr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3f3ecdc7-1ddd-4b6c-b16c-5ec042e4b98b', 'status': 'released'} dm3 2R 8595587 8618440 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF331QXM/, /files/ENCFF059UHX/ 1248547220 Kevin White, UChicago 51ea4978e034948096b5619545d04e00 https://www.encodeproject.org/files/ENCFF707LKV/@@download/ENCFF707LKV.bam released s3://encode-public/2016/08/02/5ba046de-7551-4186-b44e-ef188a1017c1/ENCFF707LKV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF695ZAT bam bam alignments dm6 ENCSR565WHH Control ChIP-seq /fly-donors/ENCDO311LGL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35843/'], '@type': ['Target', 'Item'], 'name': 'rgr-dmelanogaster', 'label': 'rgr', '@id': '/targets/rgr-dmelanogaster/', 'title': 'rgr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3f3ecdc7-1ddd-4b6c-b16c-5ec042e4b98b', 'status': 'released'} dm3 2R 8595587 8618440 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF331QXM/, /files/ENCFF479RCH/ 1239884086 Kevin White, UChicago 6c754121bdf0e8982e6469dc90f269e0 https://www.encodeproject.org/files/ENCFF695ZAT/@@download/ENCFF695ZAT.bam released s3://encode-public/2016/08/04/e81102a9-9d51-40c1-82ba-c67494cd0a92/ENCFF695ZAT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF446TJK bigWig bigWig signal of unique reads dm3 ENCSR565WHH Control ChIP-seq /fly-donors/ENCDO311LGL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35843/'], '@type': ['Target', 'Item'], 'name': 'rgr-dmelanogaster', 'label': 'rgr', '@id': '/targets/rgr-dmelanogaster/', 'title': 'rgr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3f3ecdc7-1ddd-4b6c-b16c-5ec042e4b98b', 'status': 'released'} dm3 2R 8595587 8618440 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF707LKV/ 15263232 Kevin White, UChicago e1b472b9eab616a962d1e18040de3092 https://www.encodeproject.org/files/ENCFF446TJK/@@download/ENCFF446TJK.bigWig released s3://encode-public/2016/08/04/cffa1621-b167-4653-9fbe-cc24f5ada098/ENCFF446TJK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF830NCC bigWig bigWig read-depth normalized signal dm3 ENCSR565WHH Control ChIP-seq /fly-donors/ENCDO311LGL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35843/'], '@type': ['Target', 'Item'], 'name': 'rgr-dmelanogaster', 'label': 'rgr', '@id': '/targets/rgr-dmelanogaster/', 'title': 'rgr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3f3ecdc7-1ddd-4b6c-b16c-5ec042e4b98b', 'status': 'released'} dm3 2R 8595587 8618440 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF707LKV/ 15275661 Kevin White, UChicago cf4e68600a1711bf50b12ba62c4fda62 https://www.encodeproject.org/files/ENCFF830NCC/@@download/ENCFF830NCC.bigWig released s3://encode-public/2016/08/04/82c7ba82-2b65-4174-aead-9259442097a4/ENCFF830NCC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF824ZUJ bigWig bigWig read-depth normalized signal dm6 ENCSR565WHH Control ChIP-seq /fly-donors/ENCDO311LGL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35843/'], '@type': ['Target', 'Item'], 'name': 'rgr-dmelanogaster', 'label': 'rgr', '@id': '/targets/rgr-dmelanogaster/', 'title': 'rgr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3f3ecdc7-1ddd-4b6c-b16c-5ec042e4b98b', 'status': 'released'} dm3 2R 8595587 8618440 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF695ZAT/ 17373917 Kevin White, UChicago 17046e9f2f3c1bd4239c8875aade1a35 https://www.encodeproject.org/files/ENCFF824ZUJ/@@download/ENCFF824ZUJ.bigWig released s3://encode-public/2016/08/04/1fd29a1f-1fe0-4d26-bb8c-0ba4870243b8/ENCFF824ZUJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF800MOE bigWig bigWig signal of unique reads dm6 ENCSR565WHH Control ChIP-seq /fly-donors/ENCDO311LGL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35843/'], '@type': ['Target', 'Item'], 'name': 'rgr-dmelanogaster', 'label': 'rgr', '@id': '/targets/rgr-dmelanogaster/', 'title': 'rgr (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3f3ecdc7-1ddd-4b6c-b16c-5ec042e4b98b', 'status': 'released'} dm3 2R 8595587 8618440 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF695ZAT/ 17361545 Kevin White, UChicago c2f01f2b10c085c99ea906239a4d992f https://www.encodeproject.org/files/ENCFF800MOE/@@download/ENCFF800MOE.bigWig released s3://encode-public/2016/08/04/cf19be1f-75bf-440b-9721-72c0c148bbbc/ENCFF800MOE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF301CKS fastq fastq reads ENCSR628JNH Control ChIP-seq /worm-donors/ENCDO675LOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172636/'], '@type': ['Target', 'Item'], 'name': 'unc-120-celegans', 'label': 'unc-120', '@id': '/targets/unc-120-celegans/', 'title': 'unc-120 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'febf4ce1-0da3-4199-b87a-55b3ab7f90b7', 'status': 'released'} ce11 I 8459415 8486692 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1132630277 Kevin White, UChicago d1e98f85115971b0021ba4b45038a0aa https://www.encodeproject.org/files/ENCFF301CKS/@@download/ENCFF301CKS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/04/e0cf02ba-a3d5-49f1-bbbf-b87f8a8c6a3b/ENCFF301CKS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF139CUC bam bam alignments ce10 ENCSR628JNH Control ChIP-seq /worm-donors/ENCDO675LOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172636/'], '@type': ['Target', 'Item'], 'name': 'unc-120-celegans', 'label': 'unc-120', '@id': '/targets/unc-120-celegans/', 'title': 'unc-120 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'febf4ce1-0da3-4199-b87a-55b3ab7f90b7', 'status': 'released'} ce11 I 8459415 8486692 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF301CKS/, /files/ENCFF987UMF/ 1336439924 Kevin White, UChicago 06f419b1823e89c6d4a4aebca98fd613 https://www.encodeproject.org/files/ENCFF139CUC/@@download/ENCFF139CUC.bam released s3://encode-public/2016/10/04/3d79148c-f965-458b-a031-d5c681fb0552/ENCFF139CUC.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF919EZT bam bam alignments ce11 ENCSR628JNH Control ChIP-seq /worm-donors/ENCDO675LOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172636/'], '@type': ['Target', 'Item'], 'name': 'unc-120-celegans', 'label': 'unc-120', '@id': '/targets/unc-120-celegans/', 'title': 'unc-120 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'febf4ce1-0da3-4199-b87a-55b3ab7f90b7', 'status': 'released'} ce11 I 8459415 8486692 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF301CKS/, /files/ENCFF586MOL/ 1337551128 Kevin White, UChicago 13af39fbbb2fc7a37dd6b5fa59477fb4 https://www.encodeproject.org/files/ENCFF919EZT/@@download/ENCFF919EZT.bam released s3://encode-public/2016/10/05/942619f9-dfae-4058-bbc8-8b88095ba7ec/ENCFF919EZT.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF292YZN bigWig bigWig signal of unique reads ce10 ENCSR628JNH Control ChIP-seq /worm-donors/ENCDO675LOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172636/'], '@type': ['Target', 'Item'], 'name': 'unc-120-celegans', 'label': 'unc-120', '@id': '/targets/unc-120-celegans/', 'title': 'unc-120 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'febf4ce1-0da3-4199-b87a-55b3ab7f90b7', 'status': 'released'} ce11 I 8459415 8486692 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF139CUC/ 9996366 Kevin White, UChicago f4beb1c0c9a03189247216d774d0d5a5 https://www.encodeproject.org/files/ENCFF292YZN/@@download/ENCFF292YZN.bigWig released s3://encode-public/2016/10/06/a9bc4828-86b1-4910-8460-ade007815ab6/ENCFF292YZN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF023DOQ bigWig bigWig read-depth normalized signal ce10 ENCSR628JNH Control ChIP-seq /worm-donors/ENCDO675LOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 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ENCSR628JNH Control ChIP-seq /worm-donors/ENCDO675LOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172636/'], '@type': ['Target', 'Item'], 'name': 'unc-120-celegans', 'label': 'unc-120', '@id': '/targets/unc-120-celegans/', 'title': 'unc-120 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'febf4ce1-0da3-4199-b87a-55b3ab7f90b7', 'status': 'released'} ce11 I 8459415 8486692 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF919EZT/ 9996366 Kevin White, UChicago 4ee5fda08f68c9a922a09710e609bd9e https://www.encodeproject.org/files/ENCFF402DNM/@@download/ENCFF402DNM.bigWig released s3://encode-public/2016/10/06/b10560cc-e199-4806-bff2-54baf75629d9/ENCFF402DNM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF883MZB bigWig bigWig read-depth normalized signal ce11 ENCSR628JNH Control ChIP-seq /worm-donors/ENCDO675LOI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172636/'], '@type': ['Target', 'Item'], 'name': 'unc-120-celegans', 'label': 'unc-120', '@id': '/targets/unc-120-celegans/', 'title': 'unc-120 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'febf4ce1-0da3-4199-b87a-55b3ab7f90b7', 'status': 'released'} ce11 I 8459415 8486692 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF919EZT/ 9941804 Kevin White, UChicago 77c4f3a13e5fd74c25b71c4e4a0d3420 https://www.encodeproject.org/files/ENCFF883MZB/@@download/ENCFF883MZB.bigWig released s3://encode-public/2016/10/06/5ca2519f-58cc-4c9c-953c-9236c83c9479/ENCFF883MZB.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF333PUF fastq fastq reads ENCSR945LPX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 319695252 Bradley Bernstein, Broad 8b719f94ebf8f4603597ea4daff10cbb SRA:SRR13804660 https://www.encodeproject.org/files/ENCFF333PUF/@@download/ENCFF333PUF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/0f365a50-5b6a-42f3-85ef-ff9f37194199/ENCFF333PUF.fastq.gz ENCFF679DMU fastq fastq reads ENCSR945LPX Control ChIP-seq 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2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 265356925 Bradley Bernstein, Broad ff607b1e3ed1f6c7efa788167a6d03a5 SRA:SRR13804658 https://www.encodeproject.org/files/ENCFF086ZFA/@@download/ENCFF086ZFA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/268542c0-bf49-4da1-9f27-cfd6d40a1c15/ENCFF086ZFA.fastq.gz ENCFF107GDV fastq fastq reads ENCSR945LPX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 269537909 Bradley Bernstein, Broad 531542c1bab759033922a5202b0e2a99 SRA:SRR13804659 https://www.encodeproject.org/files/ENCFF107GDV/@@download/ENCFF107GDV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b121bd7e-2924-4908-bb0f-5f7c39dec92e/ENCFF107GDV.fastq.gz ENCFF184DRT fastq fastq reads ENCSR945LPX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 314529690 Bradley Bernstein, Broad b50ac11c380dbb1b5770e412ae7c9b32 SRA:SRR13804663 https://www.encodeproject.org/files/ENCFF184DRT/@@download/ENCFF184DRT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/373fd3a0-d1d7-441b-b299-5e88173e71e9/ENCFF184DRT.fastq.gz ENCFF971XWL bam bam alignments GRCh38 ENCSR945LPX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF868RVB/, /files/ENCFF333PUF/, /files/ENCFF131BGR/, /files/ENCFF110MCL/, /files/ENCFF086ZFA/, /files/ENCFF391SQW/, /files/ENCFF107GDV/, /files/ENCFF184DRT/, /files/ENCFF679DMU/ 1908772906 ENCODE Processing Pipeline 5a689736bd82d12794eb6908ac829eb8 https://www.encodeproject.org/files/ENCFF971XWL/@@download/ENCFF971XWL.bam released s3://encode-public/2020/06/14/3e07d336-2a2d-4919-a7b4-b6c9d4968a44/ENCFF971XWL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF135ASO bam bam unfiltered alignments GRCh38 ENCSR945LPX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF868RVB/, /files/ENCFF333PUF/, /files/ENCFF131BGR/, /files/ENCFF110MCL/, /files/ENCFF086ZFA/, /files/ENCFF391SQW/, /files/ENCFF107GDV/, /files/ENCFF184DRT/, /files/ENCFF679DMU/ 2309678529 ENCODE Processing Pipeline 271d5d12f9e5fb43a5b796938a5953b0 https://www.encodeproject.org/files/ENCFF135ASO/@@download/ENCFF135ASO.bam released s3://encode-public/2020/06/14/27071fbf-1096-4045-91c4-d580a59c5884/ENCFF135ASO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF634BOU fastq fastq reads ENCSR754PHW Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': 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'14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF634BOU/, /files/ENCFF987UMF/ 912974771 Kevin White, UChicago 03d9ace48cc7da6c4a6c0d52699777fd https://www.encodeproject.org/files/ENCFF798YUC/@@download/ENCFF798YUC.bam released s3://encode-public/2016/10/04/0db5a76b-9d4e-4892-948e-c510ac48dfc1/ENCFF798YUC.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF164LYL bam bam alignments ce11 ENCSR754PHW Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF634BOU/, /files/ENCFF586MOL/ 913750515 Kevin White, UChicago d81049add7e99c7eec4049119e147d1f https://www.encodeproject.org/files/ENCFF164LYL/@@download/ENCFF164LYL.bam released s3://encode-public/2016/10/05/f8d8612f-1895-4543-b4c1-8668cd8bea43/ENCFF164LYL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF981HCE bigWig bigWig read-depth normalized signal ce10 ENCSR754PHW Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF798YUC/ 9927512 Kevin White, UChicago 5d56be0bb9b267125932ede74863b326 https://www.encodeproject.org/files/ENCFF981HCE/@@download/ENCFF981HCE.bigWig released s3://encode-public/2016/10/06/cd6ea142-1027-4df0-8271-a1dc9bda5e1b/ENCFF981HCE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF400MCS bigWig bigWig signal of unique reads ce10 ENCSR754PHW Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF798YUC/ 9927301 Kevin White, UChicago d6317a379d9de8c8af2b09f275d4fd31 https://www.encodeproject.org/files/ENCFF400MCS/@@download/ENCFF400MCS.bigWig released s3://encode-public/2016/10/06/d489e804-52fc-466d-be85-4c14ae197f68/ENCFF400MCS.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF461UXK bigWig bigWig read-depth normalized signal ce11 ENCSR754PHW Control ChIP-seq /worm-donors/ENCDO975CJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/267057/'], '@type': ['Target', 'Item'], 'name': 'ceh-9-celegans', 'label': 'ceh-9', '@id': '/targets/ceh-9-celegans/', 'title': 'ceh-9 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '89cc1127-fe7b-44d4-a57f-90605aad700b', 'status': 'released'} ce10 II 3651773 3691729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF164LYL/ 9927513 Kevin White, UChicago 5a6b0cd13225a026e6304583420f277b https://www.encodeproject.org/files/ENCFF461UXK/@@download/ENCFF461UXK.bigWig released s3://encode-public/2016/10/06/4762fb3e-9e73-4d34-9782-7b35850451cb/ENCFF461UXK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification 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/worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF476PIL/ 977642825 Kevin White, UChicago 6363a47b209eb1610be7be86b0aea712 https://www.encodeproject.org/files/ENCFF250GSZ/@@download/ENCFF250GSZ.bam released s3://encode-public/2015/08/19/d76b771c-18ff-43a8-844c-4d1dfee1bcfc/ENCFF250GSZ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF282JHO bigWig bigWig signal of unique reads ce10 ENCSR139CXE Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF250GSZ/ 9973451 Kevin White, UChicago d19199dcdced1a2f06382aacb56cc3f6 https://www.encodeproject.org/files/ENCFF282JHO/@@download/ENCFF282JHO.bigWig released s3://encode-public/2015/10/02/dfd3eabb-353a-44e0-a564-7b7dabad8d33/ENCFF282JHO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF717OVN bigWig bigWig read-depth normalized signal ce10 ENCSR139CXE Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF250GSZ/ 10010915 Kevin White, UChicago 1f7e36b31845c83b3737a57a56dd0771 https://www.encodeproject.org/files/ENCFF717OVN/@@download/ENCFF717OVN.bigWig released s3://encode-public/2015/10/02/8ad51d89-01b0-4b7a-a418-2757b28bcc0c/ENCFF717OVN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF258EDO bam bam alignments ce11 ENCSR139CXE Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF476PIL/ 978471399 Kevin White, UChicago c8a4d7be6cf29fa7870a6510020a4d42 https://www.encodeproject.org/files/ENCFF258EDO/@@download/ENCFF258EDO.bam released s3://encode-public/2016/01/16/68daae43-f47d-42ff-a88e-54a140eb1cdd/ENCFF258EDO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF502XII bigWig bigWig signal of unique reads ce11 ENCSR139CXE Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF258EDO/ 9972931 Kevin White, UChicago 842af76c77f244e7198d20368540bf81 https://www.encodeproject.org/files/ENCFF502XII/@@download/ENCFF502XII.bigWig released s3://encode-public/2016/02/03/0485aa16-a206-4957-bae5-7515f3799a47/ENCFF502XII.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF991ZSN bigWig bigWig read-depth normalized signal ce11 ENCSR139CXE Control ChIP-seq /worm-donors/ENCDO448AWA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179019/'], '@type': ['Target', 'Item'], 'name': 'F13H6.1-celegans', 'label': 'F13H6.1', '@id': '/targets/F13H6.1-celegans/', 'title': 'F13H6.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '9b30d267-8902-4ca0-948d-8f216bf33444', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF258EDO/ 10011884 Kevin White, UChicago 47199d11fb647b8577265a04922f83b3 https://www.encodeproject.org/files/ENCFF991ZSN/@@download/ENCFF991ZSN.bigWig released s3://encode-public/2016/02/03/6c1ffca8-1f84-4071-90c2-d85f84dda549/ENCFF991ZSN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF217LWR fastq fastq reads ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 737524042 Zhiping Weng, UMass ef01bf66bde028c59fca669feca3355d SRA:SRR1045831 https://www.encodeproject.org/files/ENCFF217LWR/@@download/ENCFF217LWR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/605b80d9-63e3-4c98-8c90-33622daaa6d0/ENCFF217LWR.fastq.gz mild to moderate bottlenecking, low read length ENCFF404AFK fastq fastq reads ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2375427505 Zhiping Weng, UMass aeba5741446db6318cf80a0ba94e1f79 SRA:SRR578707 https://www.encodeproject.org/files/ENCFF404AFK/@@download/ENCFF404AFK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/002987a7-3200-4ebb-abfa-a00da9b5c648/ENCFF404AFK.fastq.gz mild to moderate bottlenecking, low read length ENCFF952QEE bam bam unfiltered alignments GRCh38 ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF404AFK/, /files/ENCFF217LWR/ 3783936857 ENCODE Processing Pipeline add7d3971a460769ac4604f4ea2f39b0 https://www.encodeproject.org/files/ENCFF952QEE/@@download/ENCFF952QEE.bam released s3://encode-public/2017/03/21/d48e5a43-3f83-4429-bcc7-43ed48633e63/ENCFF952QEE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF115AHD bam bam alignments GRCh38 ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF404AFK/, /files/ENCFF217LWR/ 2193662109 ENCODE Processing Pipeline 63b4d26c2318c7f6f8bafa1f7a272feb https://www.encodeproject.org/files/ENCFF115AHD/@@download/ENCFF115AHD.bam released s3://encode-public/2017/03/21/a649418c-005a-4a8e-ae3f-2708ee9ccf23/ENCFF115AHD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF710KJZ bam bam unfiltered alignments hg19 ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF404AFK/, /files/ENCFF217LWR/ 3760384676 ENCODE Processing Pipeline 1917f1ecfae0ae3787fec0ad151d3126 https://www.encodeproject.org/files/ENCFF710KJZ/@@download/ENCFF710KJZ.bam released s3://encode-public/2017/03/21/1f72972d-bac9-4591-8d32-431762a41884/ENCFF710KJZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF953WII bam bam alignments hg19 ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF404AFK/, /files/ENCFF217LWR/ 2193895746 ENCODE Processing Pipeline 11662ff43d798427b6bc2a44eb962b92 https://www.encodeproject.org/files/ENCFF953WII/@@download/ENCFF953WII.bam released s3://encode-public/2017/03/21/afd36c5a-f47f-4238-8905-86e776be6711/ENCFF953WII.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF911NGN bam bam unfiltered alignments GRCh38 ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF217LWR/, /files/ENCFF404AFK/, /files/ENCFF110MCL/ 3686497159 ENCODE Processing Pipeline 8cf6c861172134a20d3ca3bc60c72b6f https://www.encodeproject.org/files/ENCFF911NGN/@@download/ENCFF911NGN.bam released s3://encode-public/2020/10/09/15d0f964-461f-4b6d-a402-97233aee19e4/ENCFF911NGN.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF383YXJ bam bam alignments GRCh38 ENCSR628GIZ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF217LWR/, /files/ENCFF404AFK/, /files/ENCFF110MCL/ 2411370833 ENCODE Processing Pipeline 2400e8072562f1893df62561a8fb5a8a https://www.encodeproject.org/files/ENCFF383YXJ/@@download/ENCFF383YXJ.bam released s3://encode-public/2020/10/09/e22b7064-ef32-47fe-9838-c25c0201cab0/ENCFF383YXJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length ENCFF042ZDF fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 374018556 Bradley Bernstein, Broad 9153f0eedf4d1a5319f552e49b0d02d0 SRA:SRR14104355 https://www.encodeproject.org/files/ENCFF042ZDF/@@download/ENCFF042ZDF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b3db0301-4282-4d03-9d6f-0d80834c815f/ENCFF042ZDF.fastq.gz ENCFF186YJO fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 425569787 Bradley Bernstein, Broad 486ad173930a179a68ce5c450efe48ef SRA:SRR14104359 https://www.encodeproject.org/files/ENCFF186YJO/@@download/ENCFF186YJO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b39d3b60-f667-4025-8cc4-5627a79f5d8a/ENCFF186YJO.fastq.gz ENCFF063PVN fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 371669131 Bradley Bernstein, Broad dc998c4517164cdfbfec3ca17ee3140a SRA:SRR14104356 https://www.encodeproject.org/files/ENCFF063PVN/@@download/ENCFF063PVN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5d9b34aa-4a20-4864-9636-03fa0c2c0340/ENCFF063PVN.fastq.gz ENCFF163YHK fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 370622438 Bradley Bernstein, Broad 1b5faf7e40c34c3056785bb1b929b785 SRA:SRR14104357 https://www.encodeproject.org/files/ENCFF163YHK/@@download/ENCFF163YHK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e9f5e5e9-92f3-404c-b8ad-caec4d592f2d/ENCFF163YHK.fastq.gz ENCFF855RVI fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 423177699 Bradley Bernstein, Broad 7aa6e4038f194b4f1bf4c9162085e3e0 SRA:SRR14104360 https://www.encodeproject.org/files/ENCFF855RVI/@@download/ENCFF855RVI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/23a17243-e3c5-4237-87fd-46cd423d0a62/ENCFF855RVI.fastq.gz ENCFF490INO fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 382236205 Bradley Bernstein, Broad b20194d80c03f593ee5bbb9cffa6fdd8 SRA:SRR14104358 https://www.encodeproject.org/files/ENCFF490INO/@@download/ENCFF490INO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ed417379-144f-450f-8cad-66de798da32b/ENCFF490INO.fastq.gz ENCFF928AOZ fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 420155986 Bradley Bernstein, Broad f2449e5e96f2519da723094664fd6d8b SRA:SRR14104361 https://www.encodeproject.org/files/ENCFF928AOZ/@@download/ENCFF928AOZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4ea921e8-21a2-4a40-8852-7aec27ad9cac/ENCFF928AOZ.fastq.gz ENCFF591BLI fastq fastq reads ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 401376983 Bradley Bernstein, Broad 9a14b6e1dd06b8213ab62c4f92ee5c71 SRA:SRR14104362 https://www.encodeproject.org/files/ENCFF591BLI/@@download/ENCFF591BLI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/f9e4b1b7-2449-4735-a97f-c74ebdab24fc/ENCFF591BLI.fastq.gz ENCFF292IYL bam bam unfiltered alignments GRCh38 ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF490INO/, /files/ENCFF186YJO/, /files/ENCFF042ZDF/, /files/ENCFF163YHK/, /files/ENCFF591BLI/, /files/ENCFF928AOZ/, /files/ENCFF110MCL/, /files/ENCFF855RVI/, /files/ENCFF063PVN/ 3145158453 ENCODE Processing Pipeline 13d67414517c5bba57be9ea53c706d81 https://www.encodeproject.org/files/ENCFF292IYL/@@download/ENCFF292IYL.bam released s3://encode-public/2020/06/14/1ccdb02b-893f-4737-8f63-0498812fdd73/ENCFF292IYL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF744MLA bam bam alignments GRCh38 ENCSR846POB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF490INO/, /files/ENCFF186YJO/, /files/ENCFF042ZDF/, /files/ENCFF163YHK/, /files/ENCFF591BLI/, /files/ENCFF928AOZ/, /files/ENCFF110MCL/, /files/ENCFF855RVI/, /files/ENCFF063PVN/ 2642454459 ENCODE Processing Pipeline f2fa44ca7c2879083df9c70c6b4d3675 https://www.encodeproject.org/files/ENCFF744MLA/@@download/ENCFF744MLA.bam released s3://encode-public/2020/06/14/05a17619-14a2-415e-b268-be1b330e766b/ENCFF744MLA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF932INJ fastq fastq reads ENCSR004UBJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 431808263 Bradley Bernstein, Broad d7066c69f217113bc74c674b53c5c4e7 SRA:SRR14102970 https://www.encodeproject.org/files/ENCFF932INJ/@@download/ENCFF932INJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ff150405-32ce-4819-8fb0-efb6789ef2bc/ENCFF932INJ.fastq.gz ENCFF041HVG fastq fastq reads ENCSR004UBJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 75 single-ended 401057402 Bradley Bernstein, Broad 7754ee420bfd01a7fa040e023153020a SRA:SRR14102978 https://www.encodeproject.org/files/ENCFF041HVG/@@download/ENCFF041HVG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5e59de93-74a1-4854-afe6-06e6cc6e3e83/ENCFF041HVG.fastq.gz ENCFF322ODR fastq fastq reads ENCSR004UBJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 75 single-ended 300989685 Bradley Bernstein, Broad 6445904c7ef3e401a6702bd9fd8a655f SRA:SRR14102966 https://www.encodeproject.org/files/ENCFF322ODR/@@download/ENCFF322ODR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6a3bd64f-f94a-4a54-8638-f085fc146710/ENCFF322ODR.fastq.gz ENCFF563EWP fastq fastq reads ENCSR004UBJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 474179898 Bradley Bernstein, Broad a1884e3d0868f0c7337c9785b7402815 SRA:SRR14102971 https://www.encodeproject.org/files/ENCFF563EWP/@@download/ENCFF563EWP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/507d419c-594e-4019-955f-f45967a94921/ENCFF563EWP.fastq.gz ENCFF128JSV fastq fastq reads ENCSR004UBJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 75 single-ended 288592049 Bradley Bernstein, Broad 9fea5609a30a531eb15b4cda99d4c651 SRA:SRR14102967 https://www.encodeproject.org/files/ENCFF128JSV/@@download/ENCFF128JSV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/113d87de-f1d0-4aec-8014-e4009466094d/ENCFF128JSV.fastq.gz ENCFF794WLB fastq fastq reads ENCSR004UBJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 403173788 Bradley Bernstein, Broad 56a2867e1b15f852b2ca5162d0234163 SRA:SRR14102974 https://www.encodeproject.org/files/ENCFF794WLB/@@download/ENCFF794WLB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a55d54a8-8079-4393-978f-f29d39a8c504/ENCFF794WLB.fastq.gz ENCFF419XRR fastq fastq reads ENCSR004UBJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000138 chondrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 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/files/ENCFF237JYM/, /files/ENCFF923BEZ/, /files/ENCFF932INJ/, /files/ENCFF419XRR/, /files/ENCFF110MCL/, /files/ENCFF794WLB/, /files/ENCFF095IPV/, /files/ENCFF563EWP/, /files/ENCFF059KIK/ 2910644455 ENCODE Processing Pipeline 656ff7b0fa165d9ba053466ffc7234f6 https://www.encodeproject.org/files/ENCFF324IKA/@@download/ENCFF324IKA.bam released s3://encode-public/2020/06/14/c922d922-fe45-460d-ba2b-6a35c725743f/ENCFF324IKA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF908LXU bam bam unfiltered alignments hg19 ENCSR805ITZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo 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https://www.encodeproject.org/files/ENCFF953MCP/@@download/ENCFF953MCP.bam released s3://encode-public/2015/12/09/a46d8467-99bd-484a-a66a-a15ff4dcc490/ENCFF953MCP.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF626HOS bam bam unfiltered alignments GRCh38 ENCSR805ITZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7181/'], '@type': ['Target', 'Item'], 'label': 'NR2C1', 'title': 'NR2C1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'acdd4875-4d56-4bb1-996a-f28b132854e7', 'schema_version': '14', 'name': 'NR2C1-human', '@id': 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'status': 'released'} dm3 3L 21468476 21489645 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 612916494 Kevin White, UChicago 1afe25707742af8bc9f09ec04aea15c5 https://www.encodeproject.org/files/ENCFF746ROH/@@download/ENCFF746ROH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/0b59dc89-6d98-426d-ac01-815fb4799ac1/ENCFF746ROH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF654YQV bam bam alignments dm3 ENCSR185XQI Control ChIP-seq /fly-donors/ENCDO012QCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40375/'], '@type': ['Target', 'Item'], 'name': 'Neu2-dmelanogaster', 'label': 'Neu2', '@id': '/targets/Neu2-dmelanogaster/', 'title': 'Neu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b511ac86-059c-4710-939e-e5138875cfd7', 'status': 'released'} dm3 3L 21468476 21489645 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF746ROH/ 905326093 Kevin White, UChicago 099884c629ae910d2757835a0b33be35 https://www.encodeproject.org/files/ENCFF654YQV/@@download/ENCFF654YQV.bam released s3://encode-public/2015/08/03/52eb7da6-1a08-4f26-a57d-f94b0009f452/ENCFF654YQV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF358XDS bigWig bigWig signal of unique reads dm3 ENCSR185XQI Control ChIP-seq /fly-donors/ENCDO012QCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40375/'], '@type': ['Target', 'Item'], 'name': 'Neu2-dmelanogaster', 'label': 'Neu2', '@id': '/targets/Neu2-dmelanogaster/', 'title': 'Neu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b511ac86-059c-4710-939e-e5138875cfd7', 'status': 'released'} dm3 3L 21468476 21489645 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654YQV/ 15394683 Kevin White, UChicago 7f887e11e383cd6b0ce54971d0b83979 https://www.encodeproject.org/files/ENCFF358XDS/@@download/ENCFF358XDS.bigWig released s3://encode-public/2015/10/06/3e2dc871-4b61-4673-85e8-e8421797b277/ENCFF358XDS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF182OTS bigWig bigWig read-depth normalized signal dm3 ENCSR185XQI Control ChIP-seq /fly-donors/ENCDO012QCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40375/'], '@type': ['Target', 'Item'], 'name': 'Neu2-dmelanogaster', 'label': 'Neu2', '@id': '/targets/Neu2-dmelanogaster/', 'title': 'Neu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b511ac86-059c-4710-939e-e5138875cfd7', 'status': 'released'} dm3 3L 21468476 21489645 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF654YQV/ 15432732 Kevin White, UChicago b836f93162a2c2a22e32336397e26e55 https://www.encodeproject.org/files/ENCFF182OTS/@@download/ENCFF182OTS.bigWig released s3://encode-public/2015/10/06/6c6a4b21-0c63-4955-ae58-6ec561be77f7/ENCFF182OTS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF265FOH bam bam alignments dm6 ENCSR185XQI Control ChIP-seq /fly-donors/ENCDO012QCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40375/'], '@type': ['Target', 'Item'], 'name': 'Neu2-dmelanogaster', 'label': 'Neu2', '@id': '/targets/Neu2-dmelanogaster/', 'title': 'Neu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b511ac86-059c-4710-939e-e5138875cfd7', 'status': 'released'} dm3 3L 21468476 21489645 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF746ROH/ 899114038 Kevin White, UChicago e5e9e0f365e86cfdbad5a4eca49639a5 https://www.encodeproject.org/files/ENCFF265FOH/@@download/ENCFF265FOH.bam released s3://encode-public/2016/04/22/6323c728-6080-4551-b8e6-f113020bc7b4/ENCFF265FOH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF238JSU bigWig bigWig signal of unique reads dm6 ENCSR185XQI Control ChIP-seq /fly-donors/ENCDO012QCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40375/'], '@type': ['Target', 'Item'], 'name': 'Neu2-dmelanogaster', 'label': 'Neu2', '@id': '/targets/Neu2-dmelanogaster/', 'title': 'Neu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b511ac86-059c-4710-939e-e5138875cfd7', 'status': 'released'} dm3 3L 21468476 21489645 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF265FOH/ 17472788 Kevin White, UChicago d338a52ce1d5cbaccda45d2916e6fb39 https://www.encodeproject.org/files/ENCFF238JSU/@@download/ENCFF238JSU.bigWig released s3://encode-public/2016/06/20/bffa22cc-95f9-485f-bd8a-d812fb02bb5a/ENCFF238JSU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF511KZI bigWig bigWig read-depth normalized signal dm6 ENCSR185XQI Control ChIP-seq /fly-donors/ENCDO012QCG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40375/'], '@type': ['Target', 'Item'], 'name': 'Neu2-dmelanogaster', 'label': 'Neu2', '@id': '/targets/Neu2-dmelanogaster/', 'title': 'Neu2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b511ac86-059c-4710-939e-e5138875cfd7', 'status': 'released'} dm3 3L 21468476 21489645 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF265FOH/ 17515916 Kevin White, UChicago 12f813abd951c5fe52bb6f087f1572bd https://www.encodeproject.org/files/ENCFF511KZI/@@download/ENCFF511KZI.bigWig released s3://encode-public/2016/06/20/f0909258-36cb-443d-b484-b5ac41bb85be/ENCFF511KZI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF983LMD fastq fastq reads ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 158923103 Michael Snyder, Stanford 04fec9ec0afe0f18d29ba3b16cd0e889 https://www.encodeproject.org/files/ENCFF983LMD/@@download/ENCFF983LMD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/9f4fb370-9d3c-417e-8e34-35c33db02875/ENCFF983LMD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF945SSL fastq fastq reads ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 168876616 Michael Snyder, Stanford c7974565c26de42f738973b604f2e920 https://www.encodeproject.org/files/ENCFF945SSL/@@download/ENCFF945SSL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/e3669315-3c2a-4593-afd5-dd38bece4a71/ENCFF945SSL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF358YME bam bam alignments ce10 ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF983LMD/, /files/ENCFF945SSL/, /files/ENCFF987UMF/ 433078387 Kevin White, UChicago 0c51180f3a9a2ea3649cf44715e94073 https://www.encodeproject.org/files/ENCFF358YME/@@download/ENCFF358YME.bam released s3://encode-public/2017/04/27/ac5aae6e-bf2f-480c-b418-96ed5ea9cbb8/ENCFF358YME.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF381BCD bam bam alignments ce11 ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF983LMD/, /files/ENCFF945SSL/, /files/ENCFF586MOL/ 433584961 Kevin White, UChicago 9203e894f86357c64604fd7d1e5abb4a https://www.encodeproject.org/files/ENCFF381BCD/@@download/ENCFF381BCD.bam released s3://encode-public/2017/04/27/f8c6a7d4-f820-43a3-bc5a-b4cba62f376e/ENCFF381BCD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF203RJW bigWig bigWig signal of unique reads ce10 ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF358YME/ 10038028 Kevin White, UChicago bc6060cf5769d80c1ccf394a31547219 https://www.encodeproject.org/files/ENCFF203RJW/@@download/ENCFF203RJW.bigWig released s3://encode-public/2017/04/29/57f1abd7-f2ba-4585-a967-4dd87a4f39b0/ENCFF203RJW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF472TXJ bigWig bigWig read-depth normalized signal ce10 ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF358YME/ 10052320 Kevin White, UChicago 0ef5cf6e222a4b4ad5399d09c7ebb730 https://www.encodeproject.org/files/ENCFF472TXJ/@@download/ENCFF472TXJ.bigWig released s3://encode-public/2017/04/29/23d8b7aa-cd5c-479c-b1d0-0348a3fba134/ENCFF472TXJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF819VWG bigWig bigWig read-depth normalized signal ce11 ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF381BCD/ 10043955 Kevin White, UChicago 96f830510a1ccec8f5d680c6b6216b8d https://www.encodeproject.org/files/ENCFF819VWG/@@download/ENCFF819VWG.bigWig released s3://encode-public/2017/04/29/8b9e620a-2a60-4719-a724-8d10bf75076c/ENCFF819VWG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF146KXL bigWig bigWig signal of unique reads ce11 ENCSR135POC Control ChIP-seq /worm-donors/ENCDO787YGL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178265/'], '@type': ['Target', 'Item'], 'name': 'unc-30-celegans', 'label': 'unc-30', '@id': '/targets/unc-30-celegans/', 'title': 'unc-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '76828a53-a955-4d13-a1fa-518d6e077801', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF381BCD/ 10029830 Kevin White, UChicago eecb8f61e796ea073bcacaace7e20295 https://www.encodeproject.org/files/ENCFF146KXL/@@download/ENCFF146KXL.bigWig released s3://encode-public/2017/04/29/188f6d97-551a-411a-88cd-f0459f868adc/ENCFF146KXL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF304YBK fastq fastq reads ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF254MUT/ 3691561409 Michael Snyder, Stanford 94f2885af0860cbabf519e863247e147 SRA:SRR8660103 https://www.encodeproject.org/files/ENCFF304YBK/@@download/ENCFF304YBK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/17/6629f602-2156-440e-99ee-391a988d23fe/ENCFF304YBK.fastq.gz ENCFF254MUT fastq fastq reads ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF304YBK/ 3244222128 Michael Snyder, Stanford 03dd2117b125fbc0dad63fef594b97ee SRA:SRR8660103 https://www.encodeproject.org/files/ENCFF254MUT/@@download/ENCFF254MUT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/17/febf0512-1bf2-4870-8cbf-d81e1c6f087a/ENCFF254MUT.fastq.gz ENCFF748EDX fastq fastq reads ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF522IWB/ 3222757302 Michael Snyder, Stanford 8676c0e01b1ecc823f293f1ff74031d2 SRA:SRR8660102 https://www.encodeproject.org/files/ENCFF748EDX/@@download/ENCFF748EDX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/17/34f99f69-8f86-4be0-a666-e3e0358814c3/ENCFF748EDX.fastq.gz ENCFF522IWB fastq fastq reads ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF748EDX/ 3724899754 Michael Snyder, Stanford 06e1c60159e8bb7260525451acb124c6 SRA:SRR8660102 https://www.encodeproject.org/files/ENCFF522IWB/@@download/ENCFF522IWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/17/8f99ce9d-2b67-4732-a0ff-3a5ac09fc4b7/ENCFF522IWB.fastq.gz ENCFF469ACB bam bam unfiltered alignments hg19 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF522IWB/, /files/ENCFF807MUK/, /files/ENCFF748EDX/ 7194094918 ENCODE Processing Pipeline 0fd655af431e11ecd83bd3a20641fe3a https://www.encodeproject.org/files/ENCFF469ACB/@@download/ENCFF469ACB.bam released s3://encode-public/2016/10/27/1ce0cba0-4bb2-4c5d-913d-7a12b7ce1e5f/ENCFF469ACB.bam ENCODE3 hg19 archived ENCFF382MQU bam bam unfiltered alignments hg19 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF254MUT/, /files/ENCFF807MUK/, /files/ENCFF304YBK/ 7222393181 ENCODE Processing Pipeline efb572f32be96e6d49bc5fa3e05a9036 https://www.encodeproject.org/files/ENCFF382MQU/@@download/ENCFF382MQU.bam released s3://encode-public/2016/10/27/f94eec12-8dfa-4ad5-be96-9d65addd4f5b/ENCFF382MQU.bam ENCODE3 hg19 archived ENCFF974AOO bam bam alignments hg19 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF254MUT/, /files/ENCFF807MUK/, /files/ENCFF304YBK/ 2936127708 ENCODE Processing Pipeline 608782946dd40ef64dd18e984b11b285 https://www.encodeproject.org/files/ENCFF974AOO/@@download/ENCFF974AOO.bam released s3://encode-public/2016/10/27/bca2053e-404c-41fa-96f5-a6ca61627851/ENCFF974AOO.bam ENCODE3 hg19 archived ENCFF737EBU bam bam alignments hg19 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF522IWB/, /files/ENCFF807MUK/, /files/ENCFF748EDX/ 3340663636 ENCODE Processing Pipeline 6858cc19b11065ee5b3678eab5beee64 https://www.encodeproject.org/files/ENCFF737EBU/@@download/ENCFF737EBU.bam released s3://encode-public/2016/10/27/7d59b788-c5d1-4b59-9575-afca37d86480/ENCFF737EBU.bam ENCODE3 hg19 archived ENCFF554YML bam bam unfiltered alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF522IWB/, /files/ENCFF643CGH/, /files/ENCFF748EDX/ 7235136678 ENCODE Processing Pipeline 53ec99275745dc1e57a297c682f477bc https://www.encodeproject.org/files/ENCFF554YML/@@download/ENCFF554YML.bam released s3://encode-public/2016/10/27/87c93540-4a22-485d-82e2-3d9d129028fd/ENCFF554YML.bam ENCODE3 GRCh38 archived ENCFF369WAN bam bam unfiltered alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF254MUT/, /files/ENCFF643CGH/, /files/ENCFF304YBK/ 7265149493 ENCODE Processing Pipeline 1da93ba4e78ef2d403947ab577a3de27 https://www.encodeproject.org/files/ENCFF369WAN/@@download/ENCFF369WAN.bam released s3://encode-public/2016/10/27/5e62031d-6595-4766-a525-c3587a7c2a62/ENCFF369WAN.bam ENCODE3 GRCh38 archived ENCFF034NCA bam bam alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF254MUT/, /files/ENCFF643CGH/, /files/ENCFF304YBK/ 2938281857 ENCODE Processing Pipeline 3763d6c5226ecd415bc73b97691271a0 https://www.encodeproject.org/files/ENCFF034NCA/@@download/ENCFF034NCA.bam released s3://encode-public/2016/10/27/18a9a40b-88f0-489b-a2d8-87e739a6cdd2/ENCFF034NCA.bam ENCODE3 GRCh38 archived ENCFF499MMM bam bam alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF522IWB/, /files/ENCFF643CGH/, /files/ENCFF748EDX/ 3343634522 ENCODE Processing Pipeline 34254cc18bab58c5bbfcede958aec99c https://www.encodeproject.org/files/ENCFF499MMM/@@download/ENCFF499MMM.bam released s3://encode-public/2016/10/27/976b4c22-09ed-47c5-afdb-03fe7d8ab722/ENCFF499MMM.bam ENCODE3 GRCh38 archived ENCFF267UPC bam bam unfiltered alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF254MUT/, /files/ENCFF110MCL/, /files/ENCFF304YBK/ 7360964014 ENCODE Processing Pipeline 53b31b7a70d9a78712b0dc37a0efa041 https://www.encodeproject.org/files/ENCFF267UPC/@@download/ENCFF267UPC.bam released s3://encode-public/2020/10/28/fe00148c-85be-4fb9-b60c-28260121ba31/ENCFF267UPC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF631TPW bam bam unfiltered alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF522IWB/, /files/ENCFF110MCL/, /files/ENCFF748EDX/ 7309633490 ENCODE Processing Pipeline bbf874f13281fe74c5c58359b9fd8ea3 https://www.encodeproject.org/files/ENCFF631TPW/@@download/ENCFF631TPW.bam released s3://encode-public/2020/10/28/333624e0-e810-4a7d-8585-1cdb5258798c/ENCFF631TPW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF616LRN bam bam alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF254MUT/, /files/ENCFF110MCL/, /files/ENCFF304YBK/ 3266846230 ENCODE Processing Pipeline dba0c3cc98454a1893eef2b07e160b81 https://www.encodeproject.org/files/ENCFF616LRN/@@download/ENCFF616LRN.bam released s3://encode-public/2020/10/28/37d7a4c5-c311-428f-94ef-e8cb4b019940/ENCFF616LRN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF137NQM bam bam alignments GRCh38 ENCSR698PJQ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF522IWB/, /files/ENCFF110MCL/, /files/ENCFF748EDX/ 3663540853 ENCODE Processing Pipeline 5bbcf9c53468b11d83f41c27da33a7d6 https://www.encodeproject.org/files/ENCFF137NQM/@@download/ENCFF137NQM.bam released s3://encode-public/2020/10/28/5a06302c-8ac8-4994-a712-6a7412fa459c/ENCFF137NQM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF942UQV fastq fastq reads ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2113468186 Bing Ren, UCSD 360e6e491da4dc9d79bef1a7c0576752 SRA:SRR4235773 https://www.encodeproject.org/files/ENCFF942UQV/@@download/ENCFF942UQV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/60acf66d-0f6e-4ac0-a0f6-d1382f67ead6/ENCFF942UQV.fastq.gz ENCFF914QXH fastq fastq reads ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2305455950 Bing Ren, UCSD d12d87501ec9aafab45ba41838937fdb SRA:SRR4235772 https://www.encodeproject.org/files/ENCFF914QXH/@@download/ENCFF914QXH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/457e060a-ca9b-440a-84f0-79b025bd1ee7/ENCFF914QXH.fastq.gz ENCFF493RAS bam bam unfiltered alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF942UQV/ 2996119743 ENCODE Processing Pipeline be210fb4d22e6bb6280488a86d880fb3 https://www.encodeproject.org/files/ENCFF493RAS/@@download/ENCFF493RAS.bam released s3://encode-public/2016/07/14/d5f9dc46-e87f-4a36-bba1-0b1802566e2f/ENCFF493RAS.bam ENCODE3 mm10 archived ENCFF647GKF bam bam unfiltered alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF914QXH/, /files/ENCFF018NEO/ 3161983060 ENCODE Processing Pipeline 0d0b06e8891f3f9b934096c9ee78836f https://www.encodeproject.org/files/ENCFF647GKF/@@download/ENCFF647GKF.bam released s3://encode-public/2016/07/14/dae320d0-6598-4206-baaf-ddac8ddce9c9/ENCFF647GKF.bam ENCODE3 mm10 archived ENCFF298TEL bam bam alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF942UQV/ 2223299049 ENCODE Processing Pipeline 4955a9e3c1155b1e702c892c6805bfb4 https://www.encodeproject.org/files/ENCFF298TEL/@@download/ENCFF298TEL.bam released s3://encode-public/2016/07/14/5f7a6f5c-45d0-4711-a0dd-7c1f2da675f2/ENCFF298TEL.bam ENCODE3 mm10 archived ENCFF528BOJ bam bam alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF914QXH/, /files/ENCFF018NEO/ 2343765635 ENCODE Processing Pipeline 56103fb96e76ef54254cdc8292475d8b https://www.encodeproject.org/files/ENCFF528BOJ/@@download/ENCFF528BOJ.bam released s3://encode-public/2016/07/14/a3531792-6ea3-4e08-9c9f-e68e8cb6bfe4/ENCFF528BOJ.bam ENCODE3 mm10 archived ENCFF723ZKE bam bam unfiltered alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF914QXH/ 3002293868 ENCODE Processing Pipeline eaec9b75344c5dffe771969b955e47f8 https://www.encodeproject.org/files/ENCFF723ZKE/@@download/ENCFF723ZKE.bam released s3://encode-public/2020/10/07/e12b47d0-e96c-4aa9-b03e-eb723200c162/ENCFF723ZKE.bam ENCODE4 v1.5.1 mm10 released ENCFF889TXF bam bam unfiltered alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF942UQV/ 2859844353 ENCODE Processing Pipeline b725d00bf9e0c6e9a8a4bc721fac8156 https://www.encodeproject.org/files/ENCFF889TXF/@@download/ENCFF889TXF.bam released s3://encode-public/2020/10/07/d699b1aa-dd78-4991-85ae-0eb61db6f69b/ENCFF889TXF.bam ENCODE4 v1.5.1 mm10 released ENCFF260PQF bam bam alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF942UQV/ 2187215928 ENCODE Processing Pipeline 93a63ae7498bf43d4f6650396ad82b0e https://www.encodeproject.org/files/ENCFF260PQF/@@download/ENCFF260PQF.bam released s3://encode-public/2020/10/07/913fdc81-a2dd-4ac1-83c3-359884150a0d/ENCFF260PQF.bam ENCODE4 v1.5.1 mm10 released ENCFF536CMB bam bam alignments mm10 ENCSR842LMA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF914QXH/ 2355411421 ENCODE Processing Pipeline c0a84b1426a520f7e094d281c0ca4657 https://www.encodeproject.org/files/ENCFF536CMB/@@download/ENCFF536CMB.bam released s3://encode-public/2020/10/07/f1ab3ffe-4dbe-48e7-a5ae-b0872762cfbe/ENCFF536CMB.bam ENCODE4 v1.5.1 mm10 released ENCFF982BEQ fastq fastq reads ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2210906340 Bing Ren, UCSD c0ba32657f3ba36ca9a8bb704e093c41 SRA:SRR4235707 https://www.encodeproject.org/files/ENCFF982BEQ/@@download/ENCFF982BEQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/8cfb1296-3792-4da4-88bd-cf5eeb26df32/ENCFF982BEQ.fastq.gz ENCFF024PVD fastq fastq reads ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2479801467 Bing Ren, UCSD 0fdfcf3bc5ee286a70ee0b065cf021e5 SRA:SRR4235708 https://www.encodeproject.org/files/ENCFF024PVD/@@download/ENCFF024PVD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/115e1681-326e-4404-b754-af065e68c923/ENCFF024PVD.fastq.gz ENCFF825AVI bam bam unfiltered alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF982BEQ/ 3126304251 ENCODE Processing Pipeline a1cb7b2fe86d0ff33a21948f1c1bafc0 https://www.encodeproject.org/files/ENCFF825AVI/@@download/ENCFF825AVI.bam released s3://encode-public/2016/07/14/0d9ea128-3a3f-44c6-9daf-ce04b19edbac/ENCFF825AVI.bam ENCODE3 mm10 archived ENCFF157KEH bam bam unfiltered alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF024PVD/ 3386961149 ENCODE Processing Pipeline a81dbb784fe98f80aa716d960fdd24f7 https://www.encodeproject.org/files/ENCFF157KEH/@@download/ENCFF157KEH.bam released s3://encode-public/2016/07/14/37bad694-0922-4bec-b561-c676bc734d1b/ENCFF157KEH.bam ENCODE3 mm10 archived ENCFF869IME bam bam alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF982BEQ/ 2323237661 ENCODE Processing Pipeline cee6e51c17508f35ffe4cf11d809a78f https://www.encodeproject.org/files/ENCFF869IME/@@download/ENCFF869IME.bam released s3://encode-public/2016/07/14/8d23d285-bd2d-46b7-87ec-a3c2d149c554/ENCFF869IME.bam ENCODE3 mm10 archived ENCFF940GMW bam bam alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF024PVD/ 2517619102 ENCODE Processing Pipeline 183905534fe3b69b2d32715168a9d5bc https://www.encodeproject.org/files/ENCFF940GMW/@@download/ENCFF940GMW.bam released s3://encode-public/2016/07/14/848a3233-4c23-43c0-8c12-26cbfedbbe98/ENCFF940GMW.bam ENCODE3 mm10 archived ENCFF402IOF bam bam unfiltered alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF982BEQ/, /files/ENCFF309GLL/ 2984962229 ENCODE Processing Pipeline bdd40e0d4524b33f66dbf974c9c048a0 https://www.encodeproject.org/files/ENCFF402IOF/@@download/ENCFF402IOF.bam released s3://encode-public/2020/10/08/1de1532c-bdd2-4ebd-9e9f-bb2a62d8db38/ENCFF402IOF.bam ENCODE4 v1.5.1 mm10 released ENCFF844AIE bam bam alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF982BEQ/, /files/ENCFF309GLL/ 2285764531 ENCODE Processing Pipeline 877ec1d527686c479e432579f1b79e49 https://www.encodeproject.org/files/ENCFF844AIE/@@download/ENCFF844AIE.bam released s3://encode-public/2020/10/08/5218b3e3-617e-41e2-80f3-4cc1c6fc1f9f/ENCFF844AIE.bam ENCODE4 v1.5.1 mm10 released ENCFF744MYQ bam bam unfiltered alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF024PVD/, /files/ENCFF309GLL/ 3215062263 ENCODE Processing Pipeline 5e4828d16d0d385ba9ddd595b63451e7 https://www.encodeproject.org/files/ENCFF744MYQ/@@download/ENCFF744MYQ.bam released s3://encode-public/2020/10/08/2a3e011e-2490-4409-bb78-fa2a9693d45a/ENCFF744MYQ.bam ENCODE4 v1.5.1 mm10 released ENCFF722WBS bam bam alignments mm10 ENCSR682UEM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF024PVD/, /files/ENCFF309GLL/ 2528017946 ENCODE Processing Pipeline 10a3248cef2faffc93ccade2108e37b0 https://www.encodeproject.org/files/ENCFF722WBS/@@download/ENCFF722WBS.bam released s3://encode-public/2020/10/08/126dbdfe-1e6e-41a2-bb08-61e47a15afee/ENCFF722WBS.bam ENCODE4 v1.5.1 mm10 released ENCFF846ASW fastq fastq reads ENCSR702TBJ Control ChIP-seq /fly-donors/ENCDO017UFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35555/'], '@type': ['Target', 'Item'], 'name': 'jing-dmelanogaster', 'label': 'jing', '@id': '/targets/jing-dmelanogaster/', 'title': 'jing (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72d4d55-6dbe-44c1-9f77-251f262dd0e3', 'status': 'released'} dm3 2R 2434131 2536565 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 491444505 Kevin White, UChicago 8f7ade7a1c6bc8aee26f959f9dc9e605 https://www.encodeproject.org/files/ENCFF846ASW/@@download/ENCFF846ASW.fastq.gz Illumina HiSeq 4000 /files/ENCFF635MIX/ released s3://encode-public/2018/02/01/c11eb314-985a-4d73-8b7a-7a13ed24ff97/ENCFF846ASW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF213ZVZ bam bam alignments dm6 ENCSR702TBJ Control ChIP-seq /fly-donors/ENCDO017UFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35555/'], '@type': ['Target', 'Item'], 'name': 'jing-dmelanogaster', 'label': 'jing', '@id': '/targets/jing-dmelanogaster/', 'title': 'jing (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72d4d55-6dbe-44c1-9f77-251f262dd0e3', 'status': 'released'} dm3 2R 2434131 2536565 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF846ASW/, /files/ENCFF479RCH/ 652550262 Kevin White, UChicago 393441cb069dce7448a533421474ece7 https://www.encodeproject.org/files/ENCFF213ZVZ/@@download/ENCFF213ZVZ.bam released s3://encode-public/2018/02/02/e3eaefc9-9ec2-47a4-a22f-da84cb3a58d0/ENCFF213ZVZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF631VKH bigWig bigWig signal of unique reads dm6 ENCSR702TBJ Control ChIP-seq /fly-donors/ENCDO017UFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35555/'], '@type': ['Target', 'Item'], 'name': 'jing-dmelanogaster', 'label': 'jing', '@id': '/targets/jing-dmelanogaster/', 'title': 'jing (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72d4d55-6dbe-44c1-9f77-251f262dd0e3', 'status': 'released'} dm3 2R 2434131 2536565 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF213ZVZ/ 17536441 Kevin White, UChicago d0f7a20b56510079ceebc72364dd2c8d https://www.encodeproject.org/files/ENCFF631VKH/@@download/ENCFF631VKH.bigWig released s3://encode-public/2018/02/02/49673500-df0f-4f24-91ef-b670942ffcf2/ENCFF631VKH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF991OOT bigWig bigWig read-depth normalized signal dm6 ENCSR702TBJ Control ChIP-seq /fly-donors/ENCDO017UFJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35555/'], '@type': ['Target', 'Item'], 'name': 'jing-dmelanogaster', 'label': 'jing', '@id': '/targets/jing-dmelanogaster/', 'title': 'jing (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72d4d55-6dbe-44c1-9f77-251f262dd0e3', 'status': 'released'} dm3 2R 2434131 2536565 DNA 2018-02-05 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF213ZVZ/ 17588572 Kevin White, UChicago 2fe4640064cf46a680b0653f99e6820f https://www.encodeproject.org/files/ENCFF991OOT/@@download/ENCFF991OOT.bigWig released s3://encode-public/2018/02/02/a34f077f-269a-44c7-b185-17c604162e21/ENCFF991OOT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF739BSY fastq fastq reads ENCSR664OPV Control ChIP-seq /fly-donors/ENCDO277WWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40817/'], '@type': ['Target', 'Item'], 'name': 'lab-dmelanogaster', 'label': 'lab', '@id': '/targets/lab-dmelanogaster/', 'title': 'lab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fc9d9344-eeb7-4033-b86c-670593451b2a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 686321798 Kevin White, UChicago 790858a611683c50f66d3e7421e72b67 https://www.encodeproject.org/files/ENCFF739BSY/@@download/ENCFF739BSY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/05c3957d-963f-446a-8fde-574989568af6/ENCFF739BSY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF811NMV bam bam alignments dm3 ENCSR664OPV Control ChIP-seq /fly-donors/ENCDO277WWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40817/'], '@type': ['Target', 'Item'], 'name': 'lab-dmelanogaster', 'label': 'lab', '@id': '/targets/lab-dmelanogaster/', 'title': 'lab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fc9d9344-eeb7-4033-b86c-670593451b2a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF739BSY/ 925759999 Kevin White, UChicago bccdda4bde26a7921a8b452df1e19e51 https://www.encodeproject.org/files/ENCFF811NMV/@@download/ENCFF811NMV.bam released s3://encode-public/2017/09/12/b2bf3b1e-8cfc-4fb9-8fcd-00f35bafc7d3/ENCFF811NMV.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF468GJJ bam bam alignments dm6 ENCSR664OPV Control ChIP-seq /fly-donors/ENCDO277WWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40817/'], '@type': ['Target', 'Item'], 'name': 'lab-dmelanogaster', 'label': 'lab', '@id': '/targets/lab-dmelanogaster/', 'title': 'lab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fc9d9344-eeb7-4033-b86c-670593451b2a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF739BSY/ 911943199 Kevin White, UChicago 16136dfab277f50e1f83c45a2541ffa6 https://www.encodeproject.org/files/ENCFF468GJJ/@@download/ENCFF468GJJ.bam released s3://encode-public/2017/09/13/32239091-a8e4-485f-8d14-1662347b3286/ENCFF468GJJ.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF130ZFH bigWig bigWig signal of unique reads dm3 ENCSR664OPV Control ChIP-seq /fly-donors/ENCDO277WWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40817/'], '@type': ['Target', 'Item'], 'name': 'lab-dmelanogaster', 'label': 'lab', '@id': '/targets/lab-dmelanogaster/', 'title': 'lab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fc9d9344-eeb7-4033-b86c-670593451b2a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF811NMV/ 15312437 Kevin White, UChicago ce38a84bd3c34e760c57af0783ff1419 https://www.encodeproject.org/files/ENCFF130ZFH/@@download/ENCFF130ZFH.bigWig released s3://encode-public/2017/09/13/1d3b1aed-a192-4c90-babb-aa6621b6615d/ENCFF130ZFH.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF049TIS bigWig bigWig read-depth normalized signal dm3 ENCSR664OPV Control ChIP-seq /fly-donors/ENCDO277WWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40817/'], '@type': ['Target', 'Item'], 'name': 'lab-dmelanogaster', 'label': 'lab', '@id': '/targets/lab-dmelanogaster/', 'title': 'lab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fc9d9344-eeb7-4033-b86c-670593451b2a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF811NMV/ 15318612 Kevin White, UChicago c051bb00e0da3f5167dd64e93777b3cf https://www.encodeproject.org/files/ENCFF049TIS/@@download/ENCFF049TIS.bigWig released s3://encode-public/2017/09/13/ff437e55-e926-4f4a-af3a-342cfc737687/ENCFF049TIS.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF883RGG bigWig bigWig signal of unique reads dm6 ENCSR664OPV Control ChIP-seq /fly-donors/ENCDO277WWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40817/'], '@type': ['Target', 'Item'], 'name': 'lab-dmelanogaster', 'label': 'lab', '@id': '/targets/lab-dmelanogaster/', 'title': 'lab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fc9d9344-eeb7-4033-b86c-670593451b2a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF468GJJ/ 17502151 Kevin White, UChicago de7b717a1a0f82682d0762fb1886bb1d https://www.encodeproject.org/files/ENCFF883RGG/@@download/ENCFF883RGG.bigWig released s3://encode-public/2017/09/14/e8e897fe-4d7b-42c5-8b52-d78b86da9ab4/ENCFF883RGG.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF584MXO bigWig bigWig read-depth normalized signal dm6 ENCSR664OPV Control ChIP-seq /fly-donors/ENCDO277WWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40817/'], '@type': ['Target', 'Item'], 'name': 'lab-dmelanogaster', 'label': 'lab', '@id': '/targets/lab-dmelanogaster/', 'title': 'lab (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'fc9d9344-eeb7-4033-b86c-670593451b2a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF468GJJ/ 17508842 Kevin White, UChicago 1c30d62b583b964a5e77d0ed3324879b https://www.encodeproject.org/files/ENCFF584MXO/@@download/ENCFF584MXO.bigWig released s3://encode-public/2017/09/14/8468f7bb-6f5c-49f7-b9f2-075ef697ad4d/ENCFF584MXO.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF743SWS fastq fastq reads ENCSR527STB Control ChIP-seq /fly-donors/ENCDO444XEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43011/'], '@type': ['Target', 'Item'], 'name': 'fd96Cb-dmelanogaster', 'label': 'fd96Cb', '@id': '/targets/fd96Cb-dmelanogaster/', 'title': 'fd96Cb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '094f7097-eacd-4a46-a562-73b86b5a2dbd', 'status': 'released'} dm3 3R 25084939 25105779 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1251197132 Kevin White, UChicago bb57fd52e31fa707d2217375e69879f3 https://www.encodeproject.org/files/ENCFF743SWS/@@download/ENCFF743SWS.fastq.gz Illumina HiSeq 4000 /files/ENCFF349HKB/ released s3://encode-public/2018/09/18/c8eb8712-7ddb-45c4-a32b-1bc8d1cc9dbd/ENCFF743SWS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF547NRI bam bam alignments dm6 ENCSR527STB Control ChIP-seq /fly-donors/ENCDO444XEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43011/'], '@type': ['Target', 'Item'], 'name': 'fd96Cb-dmelanogaster', 'label': 'fd96Cb', '@id': '/targets/fd96Cb-dmelanogaster/', 'title': 'fd96Cb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '094f7097-eacd-4a46-a562-73b86b5a2dbd', 'status': 'released'} dm3 3R 25084939 25105779 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF743SWS/, /files/ENCFF479RCH/ 1703723819 Kevin White, UChicago 5401f83969e1fe6e76437646d2107d0e https://www.encodeproject.org/files/ENCFF547NRI/@@download/ENCFF547NRI.bam released s3://encode-public/2018/09/19/55056ef6-31be-4edb-af64-1765b274a9e4/ENCFF547NRI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF201PIG bigWig bigWig signal of unique reads dm6 ENCSR527STB Control ChIP-seq /fly-donors/ENCDO444XEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43011/'], '@type': ['Target', 'Item'], 'name': 'fd96Cb-dmelanogaster', 'label': 'fd96Cb', '@id': '/targets/fd96Cb-dmelanogaster/', 'title': 'fd96Cb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '094f7097-eacd-4a46-a562-73b86b5a2dbd', 'status': 'released'} dm3 3R 25084939 25105779 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547NRI/ 17939834 Kevin White, UChicago 1dd57ce1a56fce65e11225efe66d59a0 https://www.encodeproject.org/files/ENCFF201PIG/@@download/ENCFF201PIG.bigWig released s3://encode-public/2018/09/19/f0b86c9f-69e9-42cc-88d9-c13a173d2e38/ENCFF201PIG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF150SYH bigWig bigWig read-depth normalized signal dm6 ENCSR527STB Control ChIP-seq /fly-donors/ENCDO444XEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43011/'], '@type': ['Target', 'Item'], 'name': 'fd96Cb-dmelanogaster', 'label': 'fd96Cb', '@id': '/targets/fd96Cb-dmelanogaster/', 'title': 'fd96Cb (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '094f7097-eacd-4a46-a562-73b86b5a2dbd', 'status': 'released'} dm3 3R 25084939 25105779 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547NRI/ 17833612 Kevin White, UChicago 28dbd028b8ad40328393ad7d6844041a https://www.encodeproject.org/files/ENCFF150SYH/@@download/ENCFF150SYH.bigWig released s3://encode-public/2018/09/19/3bf32977-4625-42f3-bb2a-490041a25094/ENCFF150SYH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF305ZCK fastq fastq reads ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 632151093 Tim Reddy, Duke 2b0bd7f026fa5be7fd72cac50eaea2c2 SRA:SRR5129623 https://www.encodeproject.org/files/ENCFF305ZCK/@@download/ENCFF305ZCK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/26b75e78-137d-4047-a5df-9a4232bcbe44/ENCFF305ZCK.fastq.gz ENCFF725UCF fastq fastq reads ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 780612997 Tim Reddy, Duke 48a49dc9f02ebeb3061687043f817ae8 SRA:SRR5129622 https://www.encodeproject.org/files/ENCFF725UCF/@@download/ENCFF725UCF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/490915f5-6a3b-437c-8ee7-aee0d1fb9294/ENCFF725UCF.fastq.gz ENCFF834CAB fastq fastq reads ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 927923899 Tim Reddy, Duke 00d0a57db107982080aec43cf20afb14 SRA:SRR5129624 https://www.encodeproject.org/files/ENCFF834CAB/@@download/ENCFF834CAB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/826e4e30-0a92-4ca0-bf8b-743ce5941528/ENCFF834CAB.fastq.gz ENCFF127COG bam bam alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF834CAB/ 1009755429 Tim Reddy, Duke 6e64aa09fc6ccd6a39c976907d8e403a https://www.encodeproject.org/files/ENCFF127COG/@@download/ENCFF127COG.bam released s3://encode-public/2016/12/15/8970ffa2-5fa7-44cf-988b-8641f31b2328/ENCFF127COG.bam Lab custom GRCh38 archived ENCFF754GCT bam bam alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF305ZCK/ 597224172 Tim Reddy, Duke 70e9418eba2e4c54943cec3992e56087 https://www.encodeproject.org/files/ENCFF754GCT/@@download/ENCFF754GCT.bam released s3://encode-public/2016/12/15/c0f7163c-e03f-49d2-a718-a9c2418a7bd9/ENCFF754GCT.bam Lab custom GRCh38 archived ENCFF876RBI bam bam alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF725UCF/ 857224853 Tim Reddy, Duke 8477ae010a53cb979a27cb940897ee58 https://www.encodeproject.org/files/ENCFF876RBI/@@download/ENCFF876RBI.bam released s3://encode-public/2016/12/15/1243067b-8092-4888-8b88-9643e8163bb0/ENCFF876RBI.bam Lab custom GRCh38 archived ENCFF305GVY bam bam alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF834CAB/ 1064358928 ENCODE Processing Pipeline 09e8a9b878726eaee060c92e7ce9fe75 https://www.encodeproject.org/files/ENCFF305GVY/@@download/ENCFF305GVY.bam released s3://encode-public/2020/09/29/28865bb9-9efc-4aac-a587-6e150ff55213/ENCFF305GVY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF014XCO bam bam alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF725UCF/, /files/ENCFF110MCL/ 896932701 ENCODE Processing Pipeline 8e2425395f6fd3c4336ef624ea8ea104 https://www.encodeproject.org/files/ENCFF014XCO/@@download/ENCFF014XCO.bam released s3://encode-public/2020/09/29/67a74544-9b90-49f1-8dbd-01d4837ad0fb/ENCFF014XCO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF827RIG bam bam unfiltered alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF305ZCK/, /files/ENCFF110MCL/ 856521649 ENCODE Processing Pipeline 89da1260020b8515f1007a501f098367 https://www.encodeproject.org/files/ENCFF827RIG/@@download/ENCFF827RIG.bam released s3://encode-public/2020/09/29/189b46b0-1ae5-42f7-9e62-77394dce3b55/ENCFF827RIG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF627FYR bam bam alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF305ZCK/, /files/ENCFF110MCL/ 629206907 ENCODE Processing Pipeline 4909e53d34324ada3a59e746666d87e7 https://www.encodeproject.org/files/ENCFF627FYR/@@download/ENCFF627FYR.bam released s3://encode-public/2020/09/29/7b1877b5-3f03-4bde-95be-6fa0a558fe26/ENCFF627FYR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF361JEK bam bam unfiltered alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF725UCF/, /files/ENCFF110MCL/ 1057570061 ENCODE Processing Pipeline a69b1524b1b8dd1eb2d23b469d1395ff https://www.encodeproject.org/files/ENCFF361JEK/@@download/ENCFF361JEK.bam released s3://encode-public/2020/09/29/9c90296c-80de-4dfa-ad05-195e6069e54b/ENCFF361JEK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF081DUM bam bam unfiltered alignments GRCh38 ENCSR565ZHQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 5 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF834CAB/ 1255559792 ENCODE Processing Pipeline 0134151c7d99236fc81ccf571485aab6 https://www.encodeproject.org/files/ENCFF081DUM/@@download/ENCFF081DUM.bam released s3://encode-public/2020/09/29/a2ea16e2-1063-4abb-8e05-3e6015fba822/ENCFF081DUM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF850NEC fastq fastq reads ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF364SOU/ 2289924154 Michael Snyder, Stanford aadf74e100ef92ae981f0634c9550c73 SRA:SRR6212986 https://www.encodeproject.org/files/ENCFF850NEC/@@download/ENCFF850NEC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/11/03/46d17f7b-be98-4282-9791-f192ce14f466/ENCFF850NEC.fastq.gz mild to moderate bottlenecking ENCFF364SOU fastq fastq reads ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF850NEC/ 2647639551 Michael Snyder, Stanford 9d86ee890ead57fd7caf4a1a147bd92a SRA:SRR6212986 https://www.encodeproject.org/files/ENCFF364SOU/@@download/ENCFF364SOU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/11/03/2bd07d21-7f32-4c5f-8209-370685cba399/ENCFF364SOU.fastq.gz mild to moderate bottlenecking ENCFF955XQO bam bam unfiltered alignments hg19 ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF850NEC/, /files/ENCFF807MUK/, /files/ENCFF364SOU/ 4724111947 ENCODE Processing Pipeline f7ff5591aaaf001ae0596dc944919196 https://www.encodeproject.org/files/ENCFF955XQO/@@download/ENCFF955XQO.bam released s3://encode-public/2016/11/25/643cd98c-533c-4f4b-b8ab-c456764b0b05/ENCFF955XQO.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF299ZPO bam bam unfiltered alignments GRCh38 ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF850NEC/, /files/ENCFF643CGH/, /files/ENCFF364SOU/ 4731600062 ENCODE Processing Pipeline 6ab54b6c8f477305432ca58232af32bb https://www.encodeproject.org/files/ENCFF299ZPO/@@download/ENCFF299ZPO.bam released s3://encode-public/2016/11/25/31ee466c-d26a-44d7-882f-d159d0b658c3/ENCFF299ZPO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF662BKD bam bam alignments GRCh38 ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF850NEC/, /files/ENCFF643CGH/, /files/ENCFF364SOU/ 3659490522 ENCODE Processing Pipeline 78d6c4f1c09cc27b0e0de852f657e4c3 https://www.encodeproject.org/files/ENCFF662BKD/@@download/ENCFF662BKD.bam released s3://encode-public/2016/11/25/abe4a124-3be1-4f61-9ecb-a695c71be420/ENCFF662BKD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF942GWO bam bam alignments hg19 ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF850NEC/, /files/ENCFF807MUK/, /files/ENCFF364SOU/ 3651854989 ENCODE Processing Pipeline a372f38006853da17a9ac90b0d239eef https://www.encodeproject.org/files/ENCFF942GWO/@@download/ENCFF942GWO.bam released s3://encode-public/2016/11/25/c98a17ec-2be9-4411-9633-e46d822ebd57/ENCFF942GWO.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF809HFH bam bam unfiltered alignments GRCh38 ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF850NEC/, /files/ENCFF364SOU/ 4726534487 ENCODE Processing Pipeline 47de10fbf3a4d1ba6b094d9c59889309 https://www.encodeproject.org/files/ENCFF809HFH/@@download/ENCFF809HFH.bam released s3://encode-public/2020/06/03/e43f0744-3771-4759-9b1f-ac8176779501/ENCFF809HFH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF130HMQ bam bam alignments GRCh38 ENCSR047WFN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF850NEC/, /files/ENCFF364SOU/ 3590290328 ENCODE Processing Pipeline 05ac714c548aa11fad9caec0b0015333 https://www.encodeproject.org/files/ENCFF130HMQ/@@download/ENCFF130HMQ.bam released s3://encode-public/2020/06/03/dab15af7-13a2-4ed0-98f3-4b03e269d7ec/ENCFF130HMQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF414CYM tagAlign tagAlign alignments hg19 ENCSR316UPM Control ChIP-seq /human-donors/ENCDO654NKH/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF391WBR/ 221343561 Anshul Kundaje, Stanford abaea72cf016f10a98f83adee123424b https://www.encodeproject.org/files/ENCFF414CYM/@@download/ENCFF414CYM.tagAlign.gz archived s3://encode-public/2016/03/30/19b1a8e3-6574-4c3b-ada1-cd75b2984d97/ENCFF414CYM.tagAlign.gz Lab custom hg19 archived low read length ENCFF505PMV tagAlign tagAlign alignments hg19 ENCSR316UPM Control ChIP-seq UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 204439706 Anshul Kundaje, Stanford bb7839a8fa28c27e2b88d7e5a3778210 https://www.encodeproject.org/files/ENCFF505PMV/@@download/ENCFF505PMV.tagAlign.gz archived s3://encode-public/2016/02/11/324839c5-81b2-4e18-80f5-1eeb2436fada/ENCFF505PMV.tagAlign.gz Lab custom hg19 archived low read length ENCFF869AEA bam bam redacted unfiltered alignments GRCh38 ENCSR316UPM Control ChIP-seq /human-donors/ENCDO654NKH/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF391WBR/ 646528595 ENCODE Processing Pipeline 32a7c89e4f2e4e13fb8c97d22f87e8f4 https://www.encodeproject.org/files/ENCFF869AEA/@@download/ENCFF869AEA.bam released s3://encode-public/2018/01/19/1bbd621d-e3c5-4f4e-b138-8017e0fb1b3c/ENCFF869AEA.bam ENCODE3 GRCh38 archived low read length ENCFF518OQG bam bam redacted alignments GRCh38 ENCSR316UPM Control ChIP-seq /human-donors/ENCDO654NKH/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF391WBR/ 432786761 ENCODE Processing Pipeline d93109d28c9335183ae5688ed6697d11 https://www.encodeproject.org/files/ENCFF518OQG/@@download/ENCFF518OQG.bam released s3://encode-public/2018/01/19/4888d084-e3aa-446f-811f-0a5c7908abb4/ENCFF518OQG.bam ENCODE3 GRCh38 archived low read length ENCFF157AIG bam bam redacted unfiltered alignments hg19 ENCSR316UPM Control ChIP-seq /human-donors/ENCDO654NKH/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF391WBR/ 639494793 ENCODE Processing Pipeline d4ec01adfe628ba4b0c54000bfba715e https://www.encodeproject.org/files/ENCFF157AIG/@@download/ENCFF157AIG.bam released s3://encode-public/2018/01/19/fa12fc7d-c505-4504-bcfd-2849be5bd417/ENCFF157AIG.bam ENCODE3 hg19 archived low read length ENCFF608SZW bam bam redacted alignments hg19 ENCSR316UPM Control ChIP-seq /human-donors/ENCDO654NKH/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF391WBR/ 432779573 ENCODE Processing Pipeline cccb488ea517db27b6f8856cded07e25 https://www.encodeproject.org/files/ENCFF608SZW/@@download/ENCFF608SZW.bam released s3://encode-public/2018/01/19/9a0f8761-9683-4be5-94c4-6ffafeeedee6/ENCFF608SZW.bam ENCODE3 hg19 archived low read length ENCFF552XYB bam bam redacted alignments GRCh38 ENCSR316UPM Control ChIP-seq /human-donors/ENCDO654NKH/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF391WBR/, /files/ENCFF110MCL/ 1492989325 ENCODE Processing Pipeline 20cb85f8626edd0d4c703d8091bccd2e https://www.encodeproject.org/files/ENCFF552XYB/@@download/ENCFF552XYB.bam released s3://encode-public/2021/01/27/b9a51526-cb85-4b57-8694-91c71e5a1c9e/ENCFF552XYB.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF728ADN fastq fastq reads ENCSR979TXM Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF749VAK/ 2699219662 Michael Snyder, Stanford 41defd57343cd80c622248e6e504f451 SRA:SRR16814465 https://www.encodeproject.org/files/ENCFF728ADN/@@download/ENCFF728ADN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/17/51fd56af-c838-4bce-945f-f63e760c13ac/ENCFF728ADN.fastq.gz ENCFF749VAK fastq fastq reads ENCSR979TXM Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF728ADN/ 2829772536 Michael Snyder, Stanford be4fa1fd5773fd17a2b5696ff182e3e4 SRA:SRR16814465 https://www.encodeproject.org/files/ENCFF749VAK/@@download/ENCFF749VAK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/17/76ed4727-2a75-47d6-87fc-783ca59800c6/ENCFF749VAK.fastq.gz ENCFF441QMC bam bam unfiltered alignments GRCh38 ENCSR979TXM Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF728ADN/, /files/ENCFF749VAK/ 5411290695 ENCODE Processing Pipeline 74f08b833cbf0024223431369fb4d6f0 https://www.encodeproject.org/files/ENCFF441QMC/@@download/ENCFF441QMC.bam released s3://encode-public/2020/06/04/28a24cae-3b33-46e7-803e-bb971e0f637c/ENCFF441QMC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF988LNO bam bam alignments GRCh38 ENCSR979TXM Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF728ADN/, /files/ENCFF749VAK/ 4432680552 ENCODE Processing Pipeline 5df6cc820200d92c024576fc89c39b22 https://www.encodeproject.org/files/ENCFF988LNO/@@download/ENCFF988LNO.bam released s3://encode-public/2020/06/04/46a1e955-6132-4d8b-bc0c-e9a12c8fbcd7/ENCFF988LNO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF463FFT fastq fastq reads ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF211FIK/ 1880252296 Michael Snyder, Stanford aaed6a5ff06b7cfda4c153f0bed56064 SRA:SRR8660125 https://www.encodeproject.org/files/ENCFF463FFT/@@download/ENCFF463FFT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/d3d628f5-3d15-4b32-b875-df73eb0aedab/ENCFF463FFT.fastq.gz mild to moderate bottlenecking, low read depth ENCFF211FIK fastq fastq reads ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF463FFT/ 1877791634 Michael Snyder, Stanford 00bb3c1dcc5f9bc75900a9409009305f SRA:SRR8660125 https://www.encodeproject.org/files/ENCFF211FIK/@@download/ENCFF211FIK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/58038c43-2463-4ab8-b472-03b41de6c0e7/ENCFF211FIK.fastq.gz mild to moderate bottlenecking, low read depth ENCFF706JJQ bam bam unfiltered alignments GRCh38 ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF211FIK/, /files/ENCFF643CGH/, /files/ENCFF463FFT/ 4148581357 ENCODE Processing Pipeline 300daa40c0e688d98e387afd89aa44c3 https://www.encodeproject.org/files/ENCFF706JJQ/@@download/ENCFF706JJQ.bam released s3://encode-public/2016/05/06/5a48b67c-619c-4d48-b28e-96df4c7624d0/ENCFF706JJQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF228OBH bam bam alignments GRCh38 ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF211FIK/, /files/ENCFF643CGH/, /files/ENCFF463FFT/ 3389869008 ENCODE Processing Pipeline a77386fdbec55410ae476009ee16e1af https://www.encodeproject.org/files/ENCFF228OBH/@@download/ENCFF228OBH.bam released s3://encode-public/2016/05/06/687dd369-86a8-4fd6-bb32-1044c440570c/ENCFF228OBH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF943IEU bam bam unfiltered alignments hg19 ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF211FIK/, /files/ENCFF807MUK/, /files/ENCFF463FFT/ 4143078239 ENCODE Processing Pipeline 72f1dcf4dbfac0a41c06579e4a6ce8a4 https://www.encodeproject.org/files/ENCFF943IEU/@@download/ENCFF943IEU.bam released s3://encode-public/2016/12/06/532d84e4-fa0f-44a0-a012-a005c659d509/ENCFF943IEU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF252MJR bam bam alignments hg19 ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF211FIK/, /files/ENCFF807MUK/, /files/ENCFF463FFT/ 3384964873 ENCODE Processing Pipeline 43711c37faeee19ded62d0cf1946afc6 https://www.encodeproject.org/files/ENCFF252MJR/@@download/ENCFF252MJR.bam released s3://encode-public/2016/12/06/72db573c-9434-4850-a95f-74c9889e6e0c/ENCFF252MJR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF464URZ bam bam unfiltered alignments GRCh38 ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF463FFT/, /files/ENCFF211FIK/ 4136223224 ENCODE Processing Pipeline 2e9908d6f8fe1774bc043cb14048a090 https://www.encodeproject.org/files/ENCFF464URZ/@@download/ENCFF464URZ.bam released s3://encode-public/2020/06/13/459f6f72-2c58-4328-9716-1593822fbed7/ENCFF464URZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF483WDH bam bam alignments GRCh38 ENCSR168DXB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF463FFT/, /files/ENCFF211FIK/ 3322468393 ENCODE Processing Pipeline 3838028d41606d24abc79f10c0d1033c https://www.encodeproject.org/files/ENCFF483WDH/@@download/ENCFF483WDH.bam released s3://encode-public/2020/06/13/904e5bf1-a78b-43b3-9ee9-87313f6fda04/ENCFF483WDH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF068HKN bam bam unfiltered alignments hg19 ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF414HWA/, /files/ENCFF807MUK/, /files/ENCFF894RGF/ 2261446963 ENCODE Processing Pipeline 4b2ca4e687cca11e9e4af0afd613f79f https://www.encodeproject.org/files/ENCFF068HKN/@@download/ENCFF068HKN.bam released s3://encode-public/2018/02/21/0e58c57f-bab8-459e-9d31-d370ef26ebcd/ENCFF068HKN.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF894RGF fastq fastq reads ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 654137985 Kevin White, UChicago 3a93fa3e6e1148bf71d86335ee4c5809 SRA:SRR6213833 https://www.encodeproject.org/files/ENCFF894RGF/@@download/ENCFF894RGF.fastq.gz Illumina HiSeq 2500 /files/ENCFF414HWA/ released s3://encode-public/2016/03/14/a961127d-3154-49fd-8c4f-7b28c53dd455/ENCFF894RGF.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF414HWA fastq fastq reads ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1424231042 Kevin White, UChicago 73fa32c87188f9f5ad9d6012651cd0d2 SRA:SRR6213834 https://www.encodeproject.org/files/ENCFF414HWA/@@download/ENCFF414HWA.fastq.gz Illumina HiSeq 2500 /files/ENCFF647SGY/, /files/ENCFF864QSY/ released s3://encode-public/2016/03/26/393360d7-94b6-4406-9c7c-3fea8095fbf1/ENCFF414HWA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF744LSD bam bam alignments hg19 ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF414HWA/, /files/ENCFF807MUK/, /files/ENCFF894RGF/ 1705805476 ENCODE Processing Pipeline dc603ebfb7f7f912c752d026381ee9a3 https://www.encodeproject.org/files/ENCFF744LSD/@@download/ENCFF744LSD.bam released s3://encode-public/2016/04/23/e235d988-2b85-40f7-a5e3-e89b90af4fd8/ENCFF744LSD.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF523OOS bam bam unfiltered alignments GRCh38 ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF414HWA/, /files/ENCFF643CGH/, /files/ENCFF894RGF/ 2268625403 ENCODE Processing Pipeline a3cadc683a076462615e7cbb1b5ba3e3 https://www.encodeproject.org/files/ENCFF523OOS/@@download/ENCFF523OOS.bam released s3://encode-public/2016/05/06/f464c5cb-0774-4293-9c0a-2845e878556a/ENCFF523OOS.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF795UVG bam bam alignments GRCh38 ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF414HWA/, /files/ENCFF643CGH/, /files/ENCFF894RGF/ 1705356613 ENCODE Processing Pipeline 7ff0a1f70ec6ffbc858dc3b7aeac781f https://www.encodeproject.org/files/ENCFF795UVG/@@download/ENCFF795UVG.bam released s3://encode-public/2016/05/06/f02d6f91-d89d-4c4c-bd8a-85741430cb8e/ENCFF795UVG.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF537KTL bam bam alignments GRCh38 ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF414HWA/, /files/ENCFF894RGF/, /files/ENCFF110MCL/ 1804371702 ENCODE Processing Pipeline 7ac235b1b5a87182972a5ea511aae208 https://www.encodeproject.org/files/ENCFF537KTL/@@download/ENCFF537KTL.bam released s3://encode-public/2020/10/27/0e8b78d1-6861-4203-a3d8-1f791101dad0/ENCFF537KTL.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF974CAS bam bam unfiltered alignments GRCh38 ENCSR556FBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7027/'], '@type': ['Target', 'Item'], 'name': 'TFDP1-human', 'label': 'TFDP1', '@id': '/targets/TFDP1-human/', 'title': 'TFDP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e37927d9-9209-4c07-aca8-ebe5358834a3', 'status': 'released'} hg19 13 114155475 114323487 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF414HWA/, /files/ENCFF894RGF/, /files/ENCFF110MCL/ 2271267201 ENCODE Processing Pipeline 7f0b2ad3e8add2f021acc7413169d81f https://www.encodeproject.org/files/ENCFF974CAS/@@download/ENCFF974CAS.bam released s3://encode-public/2020/10/27/e8aeca01-a81e-40b4-84a1-c2cc0babe1b4/ENCFF974CAS.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF652BCH fastq fastq reads ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF241FJP/ 2571815454 Michael Snyder, Stanford 280403803cbc311c5be1372da7315977 SRA:SRR6213559 https://www.encodeproject.org/files/ENCFF652BCH/@@download/ENCFF652BCH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/d93a6fbe-762a-4d55-92cd-86fa10bdf915/ENCFF652BCH.fastq.gz ENCFF241FJP fastq fastq reads ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF652BCH/ 2618790442 Michael Snyder, Stanford 16eaacc89cf6b9c94cabb47968180a25 SRA:SRR6213559 https://www.encodeproject.org/files/ENCFF241FJP/@@download/ENCFF241FJP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/e81c84e3-2ace-41e5-8e03-6f8e6425e881/ENCFF241FJP.fastq.gz ENCFF506BDF bam bam unfiltered alignments GRCh38 ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF652BCH/, /files/ENCFF241FJP/ 5714008195 ENCODE Processing Pipeline f21bacbfceebc59f4c557712c0cc4394 https://www.encodeproject.org/files/ENCFF506BDF/@@download/ENCFF506BDF.bam released s3://encode-public/2016/05/06/12260c49-ec09-4927-a422-8c541517c91a/ENCFF506BDF.bam ENCODE3 GRCh38 archived ENCFF514CZN bam bam alignments GRCh38 ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF652BCH/, /files/ENCFF241FJP/ 4870762344 ENCODE Processing Pipeline 8269d033724bb7181209c5ddb0d8a4b1 https://www.encodeproject.org/files/ENCFF514CZN/@@download/ENCFF514CZN.bam released s3://encode-public/2016/05/06/d0b448bb-3c00-4668-ba20-0dcc0588e544/ENCFF514CZN.bam ENCODE3 GRCh38 archived ENCFF910VYQ bam bam unfiltered alignments hg19 ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF652BCH/, /files/ENCFF241FJP/ 5705624743 ENCODE Processing Pipeline 3c2c2f8c43b8bf0a33d00b0145e9c541 https://www.encodeproject.org/files/ENCFF910VYQ/@@download/ENCFF910VYQ.bam released s3://encode-public/2016/12/06/c9eb38f0-3f9a-4b76-95c4-4314fa48f31f/ENCFF910VYQ.bam ENCODE3 hg19 archived ENCFF452PDJ bam bam alignments hg19 ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF652BCH/, /files/ENCFF241FJP/ 4857604077 ENCODE Processing Pipeline d4059adffc3111300b817017d2075cd1 https://www.encodeproject.org/files/ENCFF452PDJ/@@download/ENCFF452PDJ.bam released s3://encode-public/2016/12/06/bb4571eb-751e-4334-bd18-f732b1dd334f/ENCFF452PDJ.bam ENCODE3 hg19 archived ENCFF035XKS bam bam unfiltered alignments GRCh38 ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF652BCH/, /files/ENCFF241FJP/ 5695817860 ENCODE Processing Pipeline 16f2d82cffc405e817c5f8ffc04c877c https://www.encodeproject.org/files/ENCFF035XKS/@@download/ENCFF035XKS.bam released s3://encode-public/2020/06/03/4419fa44-879d-4b30-96a1-1ceeefbd003f/ENCFF035XKS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF495FNS bam bam alignments GRCh38 ENCSR376QKK Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF652BCH/, /files/ENCFF241FJP/ 4769232564 ENCODE Processing Pipeline e5822914f94c3c9792130a72b8c634eb https://www.encodeproject.org/files/ENCFF495FNS/@@download/ENCFF495FNS.bam released s3://encode-public/2020/06/03/505a691a-3760-4b77-9398-01a44b1a2c14/ENCFF495FNS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF170MON fastq fastq reads ENCSR142HMN Control ChIP-seq /fly-donors/ENCDO451HGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50403/'], '@type': ['Target', 'Item'], 'name': 'CG12659-dmelanogaster', 'label': 'CG12659', '@id': '/targets/CG12659-dmelanogaster/', 'title': 'CG12659 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '7581804a-6a1a-4f8a-a89a-3788bfe8890a', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 899166296 Kevin White, UChicago 098eb8153dfcf892b1dd7f24a8991fbd https://www.encodeproject.org/files/ENCFF170MON/@@download/ENCFF170MON.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/1685abce-6636-497c-ac3b-fe06bd1e14fc/ENCFF170MON.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF952QWG bam bam alignments dm3 ENCSR142HMN Control ChIP-seq /fly-donors/ENCDO451HGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50403/'], '@type': ['Target', 'Item'], 'name': 'CG12659-dmelanogaster', 'label': 'CG12659', '@id': '/targets/CG12659-dmelanogaster/', 'title': 'CG12659 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '7581804a-6a1a-4f8a-a89a-3788bfe8890a', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF170MON/ 1216774191 Kevin White, UChicago a746bee2bc5d6e472fc8b42f0f0b2eb8 https://www.encodeproject.org/files/ENCFF952QWG/@@download/ENCFF952QWG.bam released s3://encode-public/2017/09/12/52e260d6-3cb6-49eb-b368-a8c25d1d8674/ENCFF952QWG.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF152FOR bam bam alignments dm6 ENCSR142HMN Control ChIP-seq /fly-donors/ENCDO451HGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50403/'], '@type': ['Target', 'Item'], 'name': 'CG12659-dmelanogaster', 'label': 'CG12659', '@id': '/targets/CG12659-dmelanogaster/', 'title': 'CG12659 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '7581804a-6a1a-4f8a-a89a-3788bfe8890a', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF170MON/ 1208656546 Kevin White, UChicago c05ba9f0f69d3a1a70d49a4c39146cc2 https://www.encodeproject.org/files/ENCFF152FOR/@@download/ENCFF152FOR.bam released s3://encode-public/2017/09/13/aa98539e-9bdd-4ffd-871d-2a0f9e40a00c/ENCFF152FOR.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF232DZE bigWig bigWig read-depth normalized signal dm3 ENCSR142HMN Control ChIP-seq /fly-donors/ENCDO451HGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50403/'], '@type': ['Target', 'Item'], 'name': 'CG12659-dmelanogaster', 'label': 'CG12659', '@id': '/targets/CG12659-dmelanogaster/', 'title': 'CG12659 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '7581804a-6a1a-4f8a-a89a-3788bfe8890a', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF952QWG/ 15491874 Kevin White, UChicago d30dbb7c78ce4cd08c43e4ead1d31f93 https://www.encodeproject.org/files/ENCFF232DZE/@@download/ENCFF232DZE.bigWig released s3://encode-public/2017/09/13/51c41001-8d52-4566-8f1c-915d8710b86c/ENCFF232DZE.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF699VDW bigWig bigWig signal of unique reads dm3 ENCSR142HMN Control ChIP-seq /fly-donors/ENCDO451HGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50403/'], '@type': ['Target', 'Item'], 'name': 'CG12659-dmelanogaster', 'label': 'CG12659', '@id': '/targets/CG12659-dmelanogaster/', 'title': 'CG12659 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '7581804a-6a1a-4f8a-a89a-3788bfe8890a', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF952QWG/ 15475841 Kevin White, UChicago 9c49d0110ebd785bac0b155af1a0fe20 https://www.encodeproject.org/files/ENCFF699VDW/@@download/ENCFF699VDW.bigWig released s3://encode-public/2017/09/13/032dc8d6-ebcd-4316-9af9-d965b14931ba/ENCFF699VDW.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF968GVF bigWig bigWig read-depth normalized signal dm6 ENCSR142HMN Control ChIP-seq /fly-donors/ENCDO451HGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50403/'], '@type': ['Target', 'Item'], 'name': 'CG12659-dmelanogaster', 'label': 'CG12659', '@id': '/targets/CG12659-dmelanogaster/', 'title': 'CG12659 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '7581804a-6a1a-4f8a-a89a-3788bfe8890a', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF152FOR/ 17729025 Kevin White, UChicago 474851b8a5cb0c1c609ca56dea10ba7a https://www.encodeproject.org/files/ENCFF968GVF/@@download/ENCFF968GVF.bigWig released s3://encode-public/2017/09/14/f97cd39f-03ad-4ff9-9114-eccfbd3eb3e6/ENCFF968GVF.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF157CJR bigWig bigWig signal of unique reads dm6 ENCSR142HMN Control ChIP-seq /fly-donors/ENCDO451HGM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/50403/'], '@type': ['Target', 'Item'], 'name': 'CG12659-dmelanogaster', 'label': 'CG12659', '@id': '/targets/CG12659-dmelanogaster/', 'title': 'CG12659 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '7581804a-6a1a-4f8a-a89a-3788bfe8890a', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF152FOR/ 17677509 Kevin White, UChicago 1437ff7db46c3ecf0a841247666589f7 https://www.encodeproject.org/files/ENCFF157CJR/@@download/ENCFF157CJR.bigWig released s3://encode-public/2017/09/14/c60b853f-6118-4445-a576-e45a8f0b4246/ENCFF157CJR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF192COE fastq fastq reads ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF459SYM/ 2390496823 Michael Snyder, Stanford 3deafa40e9421a7f206722578605921f SRA:SRR8660161 https://www.encodeproject.org/files/ENCFF192COE/@@download/ENCFF192COE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/01/1f527315-66bd-4b7a-ba64-2783daf97a8f/ENCFF192COE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF459SYM fastq fastq reads ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF192COE/ 2612461892 Michael Snyder, Stanford dcaedc2d7f7b5172deba376f031a7390 SRA:SRR8660161 https://www.encodeproject.org/files/ENCFF459SYM/@@download/ENCFF459SYM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/01/6b164e8c-a0de-4789-a561-a139f3c37705/ENCFF459SYM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF458URU bam bam alignments hg19 ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF459SYM/, /files/ENCFF807MUK/, /files/ENCFF192COE/ 3493518092 ENCODE Processing Pipeline 9aba7049598434aeedd783d394d1dc94 https://www.encodeproject.org/files/ENCFF458URU/@@download/ENCFF458URU.bam released s3://encode-public/2016/12/07/9196e1af-b14b-42e3-84d1-dd960112324b/ENCFF458URU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF814UTA bam bam unfiltered alignments hg19 ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF459SYM/, /files/ENCFF807MUK/, /files/ENCFF192COE/ 4705136284 ENCODE Processing Pipeline 63cb1f9c8bb0b6c839beaac239972271 https://www.encodeproject.org/files/ENCFF814UTA/@@download/ENCFF814UTA.bam released s3://encode-public/2016/12/07/3dd27ed3-a971-4e1b-8d08-383bf7ea563e/ENCFF814UTA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF503UOS bam bam unfiltered alignments GRCh38 ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF459SYM/, /files/ENCFF643CGH/, /files/ENCFF192COE/ 4713209110 ENCODE Processing Pipeline 6c7c560a05f2a93358e183e157f24e6b https://www.encodeproject.org/files/ENCFF503UOS/@@download/ENCFF503UOS.bam released s3://encode-public/2016/12/07/e85aab65-7cea-467b-bc76-082220662a9e/ENCFF503UOS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF002VFN bam bam alignments GRCh38 ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF459SYM/, /files/ENCFF643CGH/, /files/ENCFF192COE/ 3500367024 ENCODE Processing Pipeline 882f3218ed2f3b3dbfde8b427caf189c https://www.encodeproject.org/files/ENCFF002VFN/@@download/ENCFF002VFN.bam released s3://encode-public/2016/12/07/bd5ed3ec-63eb-4171-ab40-c25eb404ab8b/ENCFF002VFN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF783KWC bam bam unfiltered alignments GRCh38 ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF192COE/, /files/ENCFF459SYM/ 4706267616 ENCODE Processing Pipeline 5d8289baabd6bffc2bff359ebbd51aa3 https://www.encodeproject.org/files/ENCFF783KWC/@@download/ENCFF783KWC.bam released s3://encode-public/2020/06/02/b888a6c7-3d3f-4002-a335-37df389f1471/ENCFF783KWC.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF551XRX bam bam alignments GRCh38 ENCSR758SCJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF192COE/, /files/ENCFF459SYM/ 3430779333 ENCODE Processing Pipeline 66e18503293960227cc9c630aadb072f https://www.encodeproject.org/files/ENCFF551XRX/@@download/ENCFF551XRX.bam released s3://encode-public/2020/06/02/d82f1636-8b22-47e2-a2cc-a7a30f382503/ENCFF551XRX.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF432OUW fastq fastq reads ENCSR363YDF Control ChIP-seq /fly-donors/ENCDO280PQJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30982/'], '@type': ['Target', 'Item'], 'name': 'sc-dmelanogaster', 'label': 'sc', '@id': '/targets/sc-dmelanogaster/', 'title': 'sc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '38c1c42c-2ddd-4222-b1f2-92f03cc44e77', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1164763764 Kevin White, UChicago 0f07f8dc5f668f193491bf194695b7f1 https://www.encodeproject.org/files/ENCFF432OUW/@@download/ENCFF432OUW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/a70b5a4c-ef20-43ac-8b39-bd68cc5b5a90/ENCFF432OUW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF671SNX bam bam alignments dm3 ENCSR363YDF Control ChIP-seq /fly-donors/ENCDO280PQJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30982/'], '@type': ['Target', 'Item'], 'name': 'sc-dmelanogaster', 'label': 'sc', '@id': '/targets/sc-dmelanogaster/', 'title': 'sc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '38c1c42c-2ddd-4222-b1f2-92f03cc44e77', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF432OUW/ 1585302382 Kevin White, UChicago 01ef00ba6e253ed12601e00099f59918 https://www.encodeproject.org/files/ENCFF671SNX/@@download/ENCFF671SNX.bam released s3://encode-public/2017/09/12/c65938a6-8355-43c2-8470-d8d43421ffc5/ENCFF671SNX.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF270YJK bam bam alignments dm6 ENCSR363YDF Control ChIP-seq /fly-donors/ENCDO280PQJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30982/'], '@type': ['Target', 'Item'], 'name': 'sc-dmelanogaster', 'label': 'sc', '@id': '/targets/sc-dmelanogaster/', 'title': 'sc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '38c1c42c-2ddd-4222-b1f2-92f03cc44e77', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF432OUW/ 1572732637 Kevin White, UChicago 3ac794c8a168da4a25071ea94898ba29 https://www.encodeproject.org/files/ENCFF270YJK/@@download/ENCFF270YJK.bam released s3://encode-public/2017/09/13/609bd950-696f-439b-ade1-46883abe2aa9/ENCFF270YJK.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF576JFY bigWig bigWig read-depth normalized signal dm3 ENCSR363YDF Control ChIP-seq /fly-donors/ENCDO280PQJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30982/'], '@type': ['Target', 'Item'], 'name': 'sc-dmelanogaster', 'label': 'sc', '@id': '/targets/sc-dmelanogaster/', 'title': 'sc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '38c1c42c-2ddd-4222-b1f2-92f03cc44e77', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF671SNX/ 15614426 Kevin White, UChicago 78758b1d71c52581d62e098751cadddc https://www.encodeproject.org/files/ENCFF576JFY/@@download/ENCFF576JFY.bigWig released s3://encode-public/2017/09/13/421434cf-109c-4cec-9ed3-becd5ef339de/ENCFF576JFY.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF850XCG bigWig bigWig signal of unique reads dm3 ENCSR363YDF Control ChIP-seq /fly-donors/ENCDO280PQJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30982/'], '@type': ['Target', 'Item'], 'name': 'sc-dmelanogaster', 'label': 'sc', '@id': '/targets/sc-dmelanogaster/', 'title': 'sc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '38c1c42c-2ddd-4222-b1f2-92f03cc44e77', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF671SNX/ 15665318 Kevin White, UChicago 5027c118ae37b7a0152094c9dd5677d8 https://www.encodeproject.org/files/ENCFF850XCG/@@download/ENCFF850XCG.bigWig released s3://encode-public/2017/09/13/7d471630-9a1d-4201-bab9-f428ff34b66d/ENCFF850XCG.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF634GFV bigWig bigWig signal of unique reads dm6 ENCSR363YDF Control ChIP-seq /fly-donors/ENCDO280PQJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30982/'], '@type': ['Target', 'Item'], 'name': 'sc-dmelanogaster', 'label': 'sc', '@id': '/targets/sc-dmelanogaster/', 'title': 'sc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '38c1c42c-2ddd-4222-b1f2-92f03cc44e77', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF270YJK/ 17839985 Kevin White, UChicago 9a252b2ab1d12219af12b9481903ccb5 https://www.encodeproject.org/files/ENCFF634GFV/@@download/ENCFF634GFV.bigWig released s3://encode-public/2017/09/14/15dc9438-ab8c-482b-ab10-0c758bfd1328/ENCFF634GFV.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF801DZB bigWig bigWig read-depth normalized signal dm6 ENCSR363YDF Control ChIP-seq /fly-donors/ENCDO280PQJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30982/'], '@type': ['Target', 'Item'], 'name': 'sc-dmelanogaster', 'label': 'sc', '@id': '/targets/sc-dmelanogaster/', 'title': 'sc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '38c1c42c-2ddd-4222-b1f2-92f03cc44e77', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF270YJK/ 17770518 Kevin White, UChicago b8703f839a2ab470caeb42fe86fe8280 https://www.encodeproject.org/files/ENCFF801DZB/@@download/ENCFF801DZB.bigWig released s3://encode-public/2017/09/14/7290b2f0-f39b-4e5d-a2db-672ae09f06e5/ENCFF801DZB.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF282ODO fastq fastq reads ENCSR889UFR Control ChIP-seq /fly-donors/ENCDO298DVU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42057/'], '@type': ['Target', 'Item'], 'name': 'CG3995-dmelanogaster', 'label': 'CG3995', '@id': '/targets/CG3995-dmelanogaster/', 'title': 'CG3995 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cbc5402b-814b-433e-bc37-9aa583761b41', 'status': 'released'} dm3 3R 12853074 12873415 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 640560350 Kevin White, UChicago e975a7d5a55ff0a98106344b57c2fba9 https://www.encodeproject.org/files/ENCFF282ODO/@@download/ENCFF282ODO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/c7a1a827-5ca9-4097-8782-8cefacc34e5c/ENCFF282ODO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF877KDY bam bam alignments dm3 ENCSR889UFR Control ChIP-seq /fly-donors/ENCDO298DVU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42057/'], '@type': ['Target', 'Item'], 'name': 'CG3995-dmelanogaster', 'label': 'CG3995', '@id': '/targets/CG3995-dmelanogaster/', 'title': 'CG3995 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cbc5402b-814b-433e-bc37-9aa583761b41', 'status': 'released'} dm3 3R 12853074 12873415 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF282ODO/, /files/ENCFF059UHX/ 774056193 Kevin White, UChicago aecd51a424880ef83df8184d08245e30 https://www.encodeproject.org/files/ENCFF877KDY/@@download/ENCFF877KDY.bam released s3://encode-public/2016/08/03/1b5752bd-8b4f-44ff-96f2-eeb05e3b8158/ENCFF877KDY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF412CDY bam bam alignments dm6 ENCSR889UFR Control ChIP-seq /fly-donors/ENCDO298DVU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42057/'], '@type': ['Target', 'Item'], 'name': 'CG3995-dmelanogaster', 'label': 'CG3995', '@id': '/targets/CG3995-dmelanogaster/', 'title': 'CG3995 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cbc5402b-814b-433e-bc37-9aa583761b41', 'status': 'released'} dm3 3R 12853074 12873415 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF282ODO/, /files/ENCFF479RCH/ 770779034 Kevin White, UChicago 895894cc75fa975836a7ff6cd7396b6b https://www.encodeproject.org/files/ENCFF412CDY/@@download/ENCFF412CDY.bam released s3://encode-public/2016/08/04/ec0d33b0-fafc-40df-b6be-c4bdb7721023/ENCFF412CDY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF819ORN bigWig bigWig read-depth normalized signal dm3 ENCSR889UFR Control ChIP-seq /fly-donors/ENCDO298DVU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42057/'], '@type': ['Target', 'Item'], 'name': 'CG3995-dmelanogaster', 'label': 'CG3995', '@id': '/targets/CG3995-dmelanogaster/', 'title': 'CG3995 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cbc5402b-814b-433e-bc37-9aa583761b41', 'status': 'released'} dm3 3R 12853074 12873415 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF877KDY/ 15301260 Kevin White, UChicago cc8d13fdc320ad6864722f833d47a2d5 https://www.encodeproject.org/files/ENCFF819ORN/@@download/ENCFF819ORN.bigWig released s3://encode-public/2016/08/04/f8dae229-f861-4e77-af5b-948fcf723101/ENCFF819ORN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF932HEH bigWig bigWig signal of unique reads dm3 ENCSR889UFR Control ChIP-seq /fly-donors/ENCDO298DVU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42057/'], '@type': ['Target', 'Item'], 'name': 'CG3995-dmelanogaster', 'label': 'CG3995', '@id': '/targets/CG3995-dmelanogaster/', 'title': 'CG3995 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cbc5402b-814b-433e-bc37-9aa583761b41', 'status': 'released'} dm3 3R 12853074 12873415 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF877KDY/ 15249160 Kevin White, UChicago b0cf8ecff24c3eaa94b8514aa6e053b5 https://www.encodeproject.org/files/ENCFF932HEH/@@download/ENCFF932HEH.bigWig released s3://encode-public/2016/08/04/69740b82-0a4b-47cb-8be1-09e3aca829fc/ENCFF932HEH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF625GZW bigWig bigWig signal of unique reads dm6 ENCSR889UFR Control ChIP-seq /fly-donors/ENCDO298DVU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42057/'], '@type': ['Target', 'Item'], 'name': 'CG3995-dmelanogaster', 'label': 'CG3995', '@id': '/targets/CG3995-dmelanogaster/', 'title': 'CG3995 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cbc5402b-814b-433e-bc37-9aa583761b41', 'status': 'released'} dm3 3R 12853074 12873415 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF412CDY/ 17371535 Kevin White, UChicago 8a58c37b021b58ff942c3fe50a90ee48 https://www.encodeproject.org/files/ENCFF625GZW/@@download/ENCFF625GZW.bigWig released s3://encode-public/2016/08/04/696b3b27-a8c6-4538-92d2-bea41b2377b2/ENCFF625GZW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF003LON bigWig bigWig read-depth normalized signal dm6 ENCSR889UFR Control ChIP-seq /fly-donors/ENCDO298DVU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42057/'], '@type': ['Target', 'Item'], 'name': 'CG3995-dmelanogaster', 'label': 'CG3995', '@id': '/targets/CG3995-dmelanogaster/', 'title': 'CG3995 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cbc5402b-814b-433e-bc37-9aa583761b41', 'status': 'released'} dm3 3R 12853074 12873415 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF412CDY/ 17452545 Kevin White, UChicago 6f515715cf53ac9dbf3a881a2aca7795 https://www.encodeproject.org/files/ENCFF003LON/@@download/ENCFF003LON.bigWig released s3://encode-public/2016/08/04/8dab8b19-f07e-461a-91dd-9512dfb79385/ENCFF003LON.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF716YQA bam bam alignments dm3 ENCSR964CND Control ChIP-seq /fly-donors/ENCDO231XSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38970/'], '@type': ['Target', 'Item'], 'name': 'CG6683-dmelanogaster', 'label': 'CG6683', '@id': '/targets/CG6683-dmelanogaster/', 'title': 'CG6683 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b85bb25d-d355-4aca-ae46-4ff54ade574e', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF304MUH/ 4359600571 Kevin White, UChicago 5848b723b08ae343324e98084813d525 https://www.encodeproject.org/files/ENCFF716YQA/@@download/ENCFF716YQA.bam released s3://encode-public/2017/09/19/818e6f39-b3ad-4d92-bfc1-76ca851d6b29/ENCFF716YQA.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF410MTM bam bam alignments dm6 ENCSR964CND Control ChIP-seq /fly-donors/ENCDO231XSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38970/'], '@type': ['Target', 'Item'], 'name': 'CG6683-dmelanogaster', 'label': 'CG6683', '@id': '/targets/CG6683-dmelanogaster/', 'title': 'CG6683 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b85bb25d-d355-4aca-ae46-4ff54ade574e', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF304MUH/ 4333205763 Kevin White, UChicago adfc641410431b406e5efef6dca9684f https://www.encodeproject.org/files/ENCFF410MTM/@@download/ENCFF410MTM.bam released s3://encode-public/2017/09/19/8fbb9fc2-5b68-40e0-86f8-9cec8f735327/ENCFF410MTM.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF304MUH fastq fastq reads ENCSR964CND Control ChIP-seq /fly-donors/ENCDO231XSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38970/'], '@type': ['Target', 'Item'], 'name': 'CG6683-dmelanogaster', 'label': 'CG6683', '@id': '/targets/CG6683-dmelanogaster/', 'title': 'CG6683 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b85bb25d-d355-4aca-ae46-4ff54ade574e', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3163698040 Kevin White, UChicago a3232935227aeb353d8c90a19896aa83 https://www.encodeproject.org/files/ENCFF304MUH/@@download/ENCFF304MUH.fastq.gz Illumina HiSeq 4000 /files/ENCFF304MUH/ released s3://encode-public/2017/09/19/f4388270-d131-43b6-bc48-c0d412d7d76d/ENCFF304MUH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF294RMR bigWig bigWig read-depth normalized signal dm3 ENCSR964CND Control ChIP-seq /fly-donors/ENCDO231XSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38970/'], '@type': ['Target', 'Item'], 'name': 'CG6683-dmelanogaster', 'label': 'CG6683', '@id': '/targets/CG6683-dmelanogaster/', 'title': 'CG6683 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b85bb25d-d355-4aca-ae46-4ff54ade574e', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF716YQA/ 15817907 Kevin White, UChicago bf71f9cf43012661a96bd4b8dc076cb2 https://www.encodeproject.org/files/ENCFF294RMR/@@download/ENCFF294RMR.bigWig released s3://encode-public/2017/09/19/b58383d3-12b3-4c9c-bf6a-b7cab350d6da/ENCFF294RMR.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF977DEA bigWig bigWig signal of unique reads dm3 ENCSR964CND Control ChIP-seq /fly-donors/ENCDO231XSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38970/'], '@type': ['Target', 'Item'], 'name': 'CG6683-dmelanogaster', 'label': 'CG6683', '@id': '/targets/CG6683-dmelanogaster/', 'title': 'CG6683 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b85bb25d-d355-4aca-ae46-4ff54ade574e', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF716YQA/ 15793930 Kevin White, UChicago 42f70086fa0ab1c061ee84affbd57154 https://www.encodeproject.org/files/ENCFF977DEA/@@download/ENCFF977DEA.bigWig released s3://encode-public/2017/09/19/e04697a4-abed-41c3-9e7d-7386db7500b1/ENCFF977DEA.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF207SRV bigWig bigWig signal of unique reads dm6 ENCSR964CND Control ChIP-seq /fly-donors/ENCDO231XSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38970/'], '@type': ['Target', 'Item'], 'name': 'CG6683-dmelanogaster', 'label': 'CG6683', '@id': '/targets/CG6683-dmelanogaster/', 'title': 'CG6683 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b85bb25d-d355-4aca-ae46-4ff54ade574e', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF410MTM/ 17887658 Kevin White, UChicago 3e6b7f73c9599776310c47acb668440f https://www.encodeproject.org/files/ENCFF207SRV/@@download/ENCFF207SRV.bigWig released s3://encode-public/2017/09/19/f8932595-63d4-4c2f-9b5f-5780a756b222/ENCFF207SRV.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF528EZV bigWig bigWig read-depth normalized signal dm6 ENCSR964CND Control ChIP-seq /fly-donors/ENCDO231XSW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38970/'], '@type': ['Target', 'Item'], 'name': 'CG6683-dmelanogaster', 'label': 'CG6683', '@id': '/targets/CG6683-dmelanogaster/', 'title': 'CG6683 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'b85bb25d-d355-4aca-ae46-4ff54ade574e', 'status': 'released'} DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF410MTM/ 17938291 Kevin White, UChicago 42fe584c6a305428db4ad9cb1ddebd55 https://www.encodeproject.org/files/ENCFF528EZV/@@download/ENCFF528EZV.bigWig released s3://encode-public/2017/09/19/3092aceb-998c-4b0e-91e6-c5daab6894b5/ENCFF528EZV.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF347FTP fastq fastq reads ENCSR161QIN Control ChIP-seq /fly-donors/ENCDO164QSY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42495/'], '@type': ['Target', 'Item'], 'name': 'HHEX-dmelanogaster', 'label': 'HHEX', '@id': '/targets/HHEX-dmelanogaster/', 'title': 'HHEX (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9615426f-3003-4fdd-927d-ceeda348a24f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 738250135 Kevin White, UChicago fbcf140e64c4b997f76e7541a3fa22f3 https://www.encodeproject.org/files/ENCFF347FTP/@@download/ENCFF347FTP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/478b2106-ef3c-4318-832a-863782139701/ENCFF347FTP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF319JIX bam bam alignments dm3 ENCSR161QIN Control ChIP-seq /fly-donors/ENCDO164QSY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42495/'], '@type': ['Target', 'Item'], 'name': 'HHEX-dmelanogaster', 'label': 'HHEX', '@id': '/targets/HHEX-dmelanogaster/', 'title': 'HHEX (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9615426f-3003-4fdd-927d-ceeda348a24f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF347FTP/ 1000460840 Kevin White, UChicago a1b3b2c811bf1ea36f00fa5ab19dcb0c https://www.encodeproject.org/files/ENCFF319JIX/@@download/ENCFF319JIX.bam released s3://encode-public/2017/09/12/a49d04e5-576a-48d6-bd0e-70b9fcf866ee/ENCFF319JIX.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF370JQQ bam bam alignments dm6 ENCSR161QIN Control ChIP-seq /fly-donors/ENCDO164QSY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42495/'], '@type': ['Target', 'Item'], 'name': 'HHEX-dmelanogaster', 'label': 'HHEX', '@id': '/targets/HHEX-dmelanogaster/', 'title': 'HHEX (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9615426f-3003-4fdd-927d-ceeda348a24f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF347FTP/ 991391395 Kevin White, UChicago bae5f8ed4655d28de84041e604532fa1 https://www.encodeproject.org/files/ENCFF370JQQ/@@download/ENCFF370JQQ.bam released s3://encode-public/2017/09/13/f0303052-64e1-4551-ada4-b7275a717d15/ENCFF370JQQ.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF188WVB bigWig bigWig signal of unique reads dm3 ENCSR161QIN Control ChIP-seq /fly-donors/ENCDO164QSY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42495/'], '@type': ['Target', 'Item'], 'name': 'HHEX-dmelanogaster', 'label': 'HHEX', '@id': '/targets/HHEX-dmelanogaster/', 'title': 'HHEX (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9615426f-3003-4fdd-927d-ceeda348a24f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF319JIX/ 15436185 Kevin White, UChicago eb2803c639e47dd801c8bf0a77c97c79 https://www.encodeproject.org/files/ENCFF188WVB/@@download/ENCFF188WVB.bigWig released s3://encode-public/2017/09/14/fef09ad8-87d9-4c92-8c6c-369493cea202/ENCFF188WVB.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF072YVH bigWig bigWig signal of unique reads dm6 ENCSR161QIN Control ChIP-seq /fly-donors/ENCDO164QSY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42495/'], '@type': ['Target', 'Item'], 'name': 'HHEX-dmelanogaster', 'label': 'HHEX', '@id': '/targets/HHEX-dmelanogaster/', 'title': 'HHEX (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9615426f-3003-4fdd-927d-ceeda348a24f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF370JQQ/ 17608487 Kevin White, UChicago 0e2c7d9c473cf404821efd405dfe58a0 https://www.encodeproject.org/files/ENCFF072YVH/@@download/ENCFF072YVH.bigWig released s3://encode-public/2017/09/14/22d4dc35-e62b-4532-b44c-78b31b0a7b00/ENCFF072YVH.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF543EBM bigWig bigWig read-depth normalized signal dm3 ENCSR161QIN Control ChIP-seq /fly-donors/ENCDO164QSY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42495/'], '@type': ['Target', 'Item'], 'name': 'HHEX-dmelanogaster', 'label': 'HHEX', '@id': '/targets/HHEX-dmelanogaster/', 'title': 'HHEX (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9615426f-3003-4fdd-927d-ceeda348a24f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF319JIX/ 15446226 Kevin White, UChicago e6f07a4f52b37519e28890852292129d https://www.encodeproject.org/files/ENCFF543EBM/@@download/ENCFF543EBM.bigWig released s3://encode-public/2017/09/14/c8563892-5c80-45e3-861a-8a7b04edf5e1/ENCFF543EBM.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF296VDH bigWig bigWig read-depth normalized signal dm6 ENCSR161QIN Control ChIP-seq /fly-donors/ENCDO164QSY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42495/'], '@type': ['Target', 'Item'], 'name': 'HHEX-dmelanogaster', 'label': 'HHEX', '@id': '/targets/HHEX-dmelanogaster/', 'title': 'HHEX (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9615426f-3003-4fdd-927d-ceeda348a24f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF370JQQ/ 17625432 Kevin White, UChicago 188120b03fe1757f37be451f2eab5b20 https://www.encodeproject.org/files/ENCFF296VDH/@@download/ENCFF296VDH.bigWig released s3://encode-public/2017/09/14/292391fe-ca80-4781-8532-83fbe256dd61/ENCFF296VDH.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF321IEZ fastq fastq reads ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF479WFS/ 3048022102 Michael Snyder, Stanford 1be5312dfbd3ae8262c53d47e33377fd SRA:SRR6214409 https://www.encodeproject.org/files/ENCFF321IEZ/@@download/ENCFF321IEZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/f0847948-e6a2-4f6b-9db2-7917be494328/ENCFF321IEZ.fastq.gz mild to moderate bottlenecking ENCFF479WFS fastq fastq reads ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF321IEZ/ 3505320556 Michael Snyder, Stanford 0f3d13b110c7cd8e9740861be318c259 SRA:SRR6214409 https://www.encodeproject.org/files/ENCFF479WFS/@@download/ENCFF479WFS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/d11b1d20-9501-4f66-bff0-69252509590f/ENCFF479WFS.fastq.gz mild to moderate bottlenecking ENCFF184FID bam bam unfiltered alignments hg19 ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF479WFS/, /files/ENCFF321IEZ/ 6167659768 ENCODE Processing Pipeline 3c9dde85a370dfd6f0fbb3d2c3e420e0 https://www.encodeproject.org/files/ENCFF184FID/@@download/ENCFF184FID.bam released s3://encode-public/2016/12/10/b940ad5a-84e7-4295-9cdf-ad11ed6fc2f7/ENCFF184FID.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF089ZLE bam bam alignments hg19 ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF479WFS/, /files/ENCFF321IEZ/ 4626838222 ENCODE Processing Pipeline 42efe97fe97fb8fa87508034095b8f22 https://www.encodeproject.org/files/ENCFF089ZLE/@@download/ENCFF089ZLE.bam released s3://encode-public/2016/12/10/4326c911-9605-441d-8096-b522ca9017b6/ENCFF089ZLE.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF834ZWK bam bam unfiltered alignments GRCh38 ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF479WFS/, /files/ENCFF321IEZ/ 6175193477 ENCODE Processing Pipeline 40011fb4c04d933c427921a07c4f8a66 https://www.encodeproject.org/files/ENCFF834ZWK/@@download/ENCFF834ZWK.bam released s3://encode-public/2016/12/10/581e1e79-5e8d-4a9c-81c5-f33c493cbaf9/ENCFF834ZWK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF023NJF bam bam alignments GRCh38 ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF479WFS/, /files/ENCFF321IEZ/ 4631899059 ENCODE Processing Pipeline 236886da132f2b57d11a73aef9f57eea https://www.encodeproject.org/files/ENCFF023NJF/@@download/ENCFF023NJF.bam released s3://encode-public/2016/12/10/35236c81-601e-4a65-a060-3e62416ef1ba/ENCFF023NJF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF398JSJ bam bam alignments GRCh38 ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF321IEZ/, /files/ENCFF479WFS/ 4564150759 ENCODE Processing Pipeline 9b13b4620cbab754a05ed96c7f599f49 https://www.encodeproject.org/files/ENCFF398JSJ/@@download/ENCFF398JSJ.bam released s3://encode-public/2020/06/02/2130498c-633e-4640-95ef-654585d64c9d/ENCFF398JSJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF992YNV bam bam unfiltered alignments GRCh38 ENCSR894EKG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001496 ascending aorta tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF321IEZ/, /files/ENCFF479WFS/ 6170449692 ENCODE Processing Pipeline a9d85c357acfcd1aeda689005629cc38 https://www.encodeproject.org/files/ENCFF992YNV/@@download/ENCFF992YNV.bam released s3://encode-public/2020/06/02/4885a627-bc2b-4f28-a202-1f587d17c2c5/ENCFF992YNV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF382EUC fastq fastq reads ENCSR010UCR Control ChIP-seq /fly-donors/ENCDO980QZC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43190/'], '@type': ['Target', 'Item'], 'name': 'tx-dmelanogaster', 'label': 'tx', '@id': '/targets/tx-dmelanogaster/', 'title': 'tx (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f1e4f81e-c9de-4b21-aab4-47d0c484bcd4', 'status': 'released'} dm3 3R 22247400 22305055 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 903694214 Kevin White, UChicago e362608b05c4d868874fffdc043b8fd5 https://www.encodeproject.org/files/ENCFF382EUC/@@download/ENCFF382EUC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/e3e06362-8da4-47c5-9607-6fbf7adc906f/ENCFF382EUC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF860QFY bam bam alignments dm3 ENCSR010UCR Control ChIP-seq /fly-donors/ENCDO980QZC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43190/'], '@type': ['Target', 'Item'], 'name': 'tx-dmelanogaster', 'label': 'tx', '@id': '/targets/tx-dmelanogaster/', 'title': 'tx (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f1e4f81e-c9de-4b21-aab4-47d0c484bcd4', 'status': 'released'} dm3 3R 22247400 22305055 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF382EUC/ 1331792335 Kevin White, UChicago 5760e5be3a194986d60e6572ebffebcb https://www.encodeproject.org/files/ENCFF860QFY/@@download/ENCFF860QFY.bam released s3://encode-public/2015/08/03/d6364996-f5c4-459c-bf40-bef1a86ffe2e/ENCFF860QFY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF271ODV bigWig bigWig read-depth normalized signal dm3 ENCSR010UCR Control ChIP-seq /fly-donors/ENCDO980QZC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43190/'], '@type': ['Target', 'Item'], 'name': 'tx-dmelanogaster', 'label': 'tx', '@id': '/targets/tx-dmelanogaster/', 'title': 'tx (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f1e4f81e-c9de-4b21-aab4-47d0c484bcd4', 'status': 'released'} dm3 3R 22247400 22305055 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF860QFY/ 15513408 Kevin White, UChicago 109b334a8c8102bac45dba1282317da7 https://www.encodeproject.org/files/ENCFF271ODV/@@download/ENCFF271ODV.bigWig released s3://encode-public/2015/10/06/995a1f07-628e-4fa8-a9a2-a1e04bdcdf4e/ENCFF271ODV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF432YPO bigWig bigWig signal of unique reads dm3 ENCSR010UCR Control ChIP-seq /fly-donors/ENCDO980QZC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43190/'], '@type': ['Target', 'Item'], 'name': 'tx-dmelanogaster', 'label': 'tx', '@id': '/targets/tx-dmelanogaster/', 'title': 'tx (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f1e4f81e-c9de-4b21-aab4-47d0c484bcd4', 'status': 'released'} dm3 3R 22247400 22305055 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF860QFY/ 15458369 Kevin White, UChicago 9763316f8983d3e344b21fd3bd83f17b https://www.encodeproject.org/files/ENCFF432YPO/@@download/ENCFF432YPO.bigWig released s3://encode-public/2015/10/06/67b117f4-2451-4af6-ad42-89d76f020cad/ENCFF432YPO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF624ANY bam bam alignments dm6 ENCSR010UCR Control ChIP-seq /fly-donors/ENCDO980QZC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43190/'], '@type': ['Target', 'Item'], 'name': 'tx-dmelanogaster', 'label': 'tx', '@id': '/targets/tx-dmelanogaster/', 'title': 'tx (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f1e4f81e-c9de-4b21-aab4-47d0c484bcd4', 'status': 'released'} dm3 3R 22247400 22305055 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF382EUC/ 1328968888 Kevin White, UChicago 050ebf9de532b1778b066a370d4b4ec9 https://www.encodeproject.org/files/ENCFF624ANY/@@download/ENCFF624ANY.bam released s3://encode-public/2016/04/22/eefa84ea-bbfe-455f-b673-167574e741fc/ENCFF624ANY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF757VQS bigWig bigWig read-depth normalized signal dm6 ENCSR010UCR Control ChIP-seq /fly-donors/ENCDO980QZC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43190/'], '@type': ['Target', 'Item'], 'name': 'tx-dmelanogaster', 'label': 'tx', '@id': '/targets/tx-dmelanogaster/', 'title': 'tx (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f1e4f81e-c9de-4b21-aab4-47d0c484bcd4', 'status': 'released'} dm3 3R 22247400 22305055 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF624ANY/ 17591513 Kevin White, UChicago f3fae34f67ea7abe895fd2ed6aef9d25 https://www.encodeproject.org/files/ENCFF757VQS/@@download/ENCFF757VQS.bigWig released s3://encode-public/2016/06/20/c2396acd-c875-4e95-b9ee-3f3c067ea239/ENCFF757VQS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF770DYT bigWig bigWig signal of unique reads dm6 ENCSR010UCR Control ChIP-seq /fly-donors/ENCDO980QZC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43190/'], '@type': ['Target', 'Item'], 'name': 'tx-dmelanogaster', 'label': 'tx', '@id': '/targets/tx-dmelanogaster/', 'title': 'tx (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': 'f1e4f81e-c9de-4b21-aab4-47d0c484bcd4', 'status': 'released'} dm3 3R 22247400 22305055 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF624ANY/ 17499941 Kevin White, UChicago 8e22cae332d98f1bea04bc2d81dc3653 https://www.encodeproject.org/files/ENCFF770DYT/@@download/ENCFF770DYT.bigWig released s3://encode-public/2016/06/20/e93f53e5-cf37-4a80-8afb-2d5ee00b06f6/ENCFF770DYT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF559YGQ bam bam unfiltered alignments hg19 ENCSR362FFL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1875/'], '@type': ['Target', 'Item'], 'name': 'E2F5-human', 'label': 'E2F5', '@id': '/targets/E2F5-human/', 'title': 'E2F5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bacc75a9-78fa-4416-9135-674ec5f6f74e', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF043SJU/, /files/ENCFF268CSZ/ 1786336294 ENCODE Processing Pipeline cdc8e531280320d0ddb1ab0206f10289 https://www.encodeproject.org/files/ENCFF559YGQ/@@download/ENCFF559YGQ.bam released s3://encode-public/2018/02/22/bd5ffa3a-d43a-48b8-baab-0949d7802924/ENCFF559YGQ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF268CSZ fastq fastq reads ENCSR362FFL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1875/'], '@type': ['Target', 'Item'], 'name': 'E2F5-human', 'label': 'E2F5', '@id': '/targets/E2F5-human/', 'title': 'E2F5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bacc75a9-78fa-4416-9135-674ec5f6f74e', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 867701568 Kevin White, UChicago 37b87a36f3a9822b6653c67444cb5a3a SRA:SRR6213533 https://www.encodeproject.org/files/ENCFF268CSZ/@@download/ENCFF268CSZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF437ZGA/, /files/ENCFF444LSU/ released s3://encode-public/2016/03/14/e0be558f-ccbe-4708-80b1-103c160f66bd/ENCFF268CSZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF043SJU fastq fastq reads ENCSR362FFL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1875/'], '@type': ['Target', 'Item'], 'name': 'E2F5-human', 'label': 'E2F5', '@id': '/targets/E2F5-human/', 'title': 'E2F5 (Homo sapiens)', 'investigated_as': ['transcription 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'genes': ['/genes/1875/'], '@type': ['Target', 'Item'], 'name': 'E2F5-human', 'label': 'E2F5', '@id': '/targets/E2F5-human/', 'title': 'E2F5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bacc75a9-78fa-4416-9135-674ec5f6f74e', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF043SJU/, /files/ENCFF268CSZ/ 1393711083 ENCODE Processing Pipeline 19dae484721ea48eafe895ad8a44fedf https://www.encodeproject.org/files/ENCFF831FLE/@@download/ENCFF831FLE.bam released s3://encode-public/2016/04/23/a6929101-73cc-4dc9-aac9-6e39a3d205c7/ENCFF831FLE.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF097EJG bam bam unfiltered alignments GRCh38 ENCSR362FFL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', 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ENCSR362FFL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1875/'], '@type': ['Target', 'Item'], 'name': 'E2F5-human', 'label': 'E2F5', '@id': '/targets/E2F5-human/', 'title': 'E2F5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bacc75a9-78fa-4416-9135-674ec5f6f74e', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF043SJU/, /files/ENCFF268CSZ/, /files/ENCFF643CGH/ 1393012014 ENCODE Processing Pipeline e355fa3245d521b6a886870292339438 https://www.encodeproject.org/files/ENCFF967YTY/@@download/ENCFF967YTY.bam released s3://encode-public/2016/05/06/39cdb720-2a74-48c7-bf13-25d0758fb178/ENCFF967YTY.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF859ZCD bam bam alignments GRCh38 ENCSR362FFL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1875/'], '@type': ['Target', 'Item'], 'name': 'E2F5-human', 'label': 'E2F5', '@id': '/targets/E2F5-human/', 'title': 'E2F5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bacc75a9-78fa-4416-9135-674ec5f6f74e', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF043SJU/, /files/ENCFF268CSZ/, /files/ENCFF110MCL/ 1458781250 ENCODE Processing Pipeline 5566b19c93969300825fd45f5e8d490c https://www.encodeproject.org/files/ENCFF859ZCD/@@download/ENCFF859ZCD.bam released s3://encode-public/2020/10/27/e8cdf375-ce7a-4bfc-b1df-fc8ae8552790/ENCFF859ZCD.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF029LLS bam bam unfiltered alignments GRCh38 ENCSR362FFL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1875/'], '@type': ['Target', 'Item'], 'name': 'E2F5-human', 'label': 'E2F5', '@id': '/targets/E2F5-human/', 'title': 'E2F5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bacc75a9-78fa-4416-9135-674ec5f6f74e', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF043SJU/, /files/ENCFF268CSZ/, /files/ENCFF110MCL/ 1774876165 ENCODE Processing Pipeline 44bd4cf1f7552c994a24f9f427098ac8 https://www.encodeproject.org/files/ENCFF029LLS/@@download/ENCFF029LLS.bam released s3://encode-public/2020/10/27/389c637c-0c07-40c1-816f-0857ae583f3b/ENCFF029LLS.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF237NBP fastq fastq reads ENCSR502CWG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/140883/'], '@type': ['Target', 'Item'], 'name': 'ZNF280B-human', 'label': 'ZNF280B', '@id': '/targets/ZNF280B-human/', 'title': 'ZNF280B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9a71742a-84a2-4c32-83c7-27e98eb99bf5', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF806ZJJ/ 2404827687 Michael Snyder, Stanford b126172bc80cf1e070457e258b0f76e5 SRA:SRR14104486 https://www.encodeproject.org/files/ENCFF237NBP/@@download/ENCFF237NBP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/944f4332-aa35-46e2-a97c-4497cbb178e8/ENCFF237NBP.fastq.gz ENCFF806ZJJ fastq fastq reads ENCSR502CWG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/140883/'], '@type': ['Target', 'Item'], 'name': 'ZNF280B-human', 'label': 'ZNF280B', '@id': '/targets/ZNF280B-human/', 'title': 'ZNF280B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9a71742a-84a2-4c32-83c7-27e98eb99bf5', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF237NBP/, /files/ENCFF806ZJJ/, /files/ENCFF110MCL/ 4654671235 ENCODE Processing Pipeline b94683cb9791783bbfdea097bdea9749 https://www.encodeproject.org/files/ENCFF012WAT/@@download/ENCFF012WAT.bam released s3://encode-public/2020/06/24/dc9014fe-9391-401b-aefb-431b2ab91c22/ENCFF012WAT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF189PBA bam bam alignments GRCh38 ENCSR502CWG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/140883/'], '@type': ['Target', 'Item'], 'name': 'ZNF280B-human', 'label': 'ZNF280B', '@id': '/targets/ZNF280B-human/', 'title': 'ZNF280B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9a71742a-84a2-4c32-83c7-27e98eb99bf5', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF237NBP/, /files/ENCFF806ZJJ/, /files/ENCFF110MCL/ 3642686313 ENCODE Processing Pipeline 733e1402d5cedca8748d2cee61e79d75 https://www.encodeproject.org/files/ENCFF189PBA/@@download/ENCFF189PBA.bam released s3://encode-public/2020/06/24/506bc64e-484d-4a37-8a58-6e414b31152a/ENCFF189PBA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF454MGO fastq fastq reads ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1 36 single-ended 1921532792 Bradley Bernstein, Broad 2b1d11c56947f9a37548c2dfd00be465 SRA:SRR5331475 https://www.encodeproject.org/files/ENCFF454MGO/@@download/ENCFF454MGO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/27/d74801a8-1cc6-4efa-8e51-101434f3201a/ENCFF454MGO.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF368OCV fastq fastq reads ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 single-ended 1216936400 Bradley Bernstein, Broad be1f23f95deae996c9c810d7e29d72d0 SRA:SRR5331477 https://www.encodeproject.org/files/ENCFF368OCV/@@download/ENCFF368OCV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/27/03114d2c-46b8-4762-8fad-fd478c4a22ee/ENCFF368OCV.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF095YNS fastq fastq reads ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_2 36 single-ended 1819590281 Bradley Bernstein, Broad 79bebc5ae600ed50f5d268c42e69820e SRA:SRR5331476 https://www.encodeproject.org/files/ENCFF095YNS/@@download/ENCFF095YNS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/27/6b4ae45b-1741-4d5c-8e5a-986595c5ae3b/ENCFF095YNS.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF141PEP bam bam unfiltered alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF368OCV/, /files/ENCFF364BTA/, /files/ENCFF110MCL/, /files/ENCFF054IRC/ 3569237839 ENCODE Processing Pipeline 6f4cd48ca57b860829d1d51743576c9e https://www.encodeproject.org/files/ENCFF141PEP/@@download/ENCFF141PEP.bam released s3://encode-public/2020/09/17/f565f4e5-7d07-4e4b-bd59-ae3daa9f16eb/ENCFF141PEP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF554AXK bam bam unfiltered alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1, 2_2 36 /files/ENCFF095YNS/, /files/ENCFF643CGH/, /files/ENCFF454MGO/ 4736978228 ENCODE Processing Pipeline dd21a886e3bd16536b7b71d31fecb935 https://www.encodeproject.org/files/ENCFF554AXK/@@download/ENCFF554AXK.bam released s3://encode-public/2016/05/25/0e04510e-a5bd-4bd1-ad8a-eb80e20d485d/ENCFF554AXK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF138HOL bam bam alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1, 2_2 36 /files/ENCFF095YNS/, /files/ENCFF643CGH/, /files/ENCFF454MGO/ 2834841262 ENCODE Processing Pipeline e981a78ccd8a93939cce5a89e0e77533 https://www.encodeproject.org/files/ENCFF138HOL/@@download/ENCFF138HOL.bam released s3://encode-public/2016/05/25/02b89e82-a92f-4710-b57f-d5078cafe443/ENCFF138HOL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF364BTA fastq fastq reads ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 76 single-ended 1803446316 Bradley Bernstein, Broad 9571beddf0604076f2d8b31ee709bfde SRA:SRR5331478 https://www.encodeproject.org/files/ENCFF364BTA/@@download/ENCFF364BTA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/df7d8c05-8904-4e51-b113-92b29578543d/ENCFF364BTA.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF054IRC fastq fastq reads ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 76 single-ended 1787492136 Bradley Bernstein, Broad f4e4982e0de1d3cd6df6948ef7d915ab SRA:SRR5331479 https://www.encodeproject.org/files/ENCFF054IRC/@@download/ENCFF054IRC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/4d25d777-61a0-497d-98cd-2df823355838/ENCFF054IRC.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF857FPM bam bam alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF368OCV/, /files/ENCFF054IRC/, /files/ENCFF364BTA/, /files/ENCFF643CGH/ 1733924995 ENCODE Processing Pipeline b4ddffaabdfc1262447ded3026e7ae0b https://www.encodeproject.org/files/ENCFF857FPM/@@download/ENCFF857FPM.bam released s3://encode-public/2016/11/08/b5799439-0572-4d42-8653-c178f4943ab6/ENCFF857FPM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF709VPJ bam bam alignments hg19 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF368OCV/, /files/ENCFF054IRC/, /files/ENCFF364BTA/, /files/ENCFF807MUK/ 1734350213 ENCODE Processing Pipeline d578ce35f59bf4c3881a89c07864e7c3 https://www.encodeproject.org/files/ENCFF709VPJ/@@download/ENCFF709VPJ.bam released s3://encode-public/2016/11/08/6f1c4695-8eb4-4643-8a9d-e1aeaa3556d8/ENCFF709VPJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF837FYA bam bam unfiltered alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF368OCV/, /files/ENCFF054IRC/, /files/ENCFF364BTA/, /files/ENCFF643CGH/ 3644936141 ENCODE Processing Pipeline a76a4a0c5028b12e50d103e84cbbd612 https://www.encodeproject.org/files/ENCFF837FYA/@@download/ENCFF837FYA.bam released s3://encode-public/2016/11/08/0c6b9fe5-819b-4718-a8e3-822b1ae9a9ef/ENCFF837FYA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF457PTN bam bam unfiltered alignments hg19 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF368OCV/, /files/ENCFF054IRC/, /files/ENCFF364BTA/, /files/ENCFF807MUK/ 3620747385 ENCODE Processing Pipeline 8c7c9677346466be5b2108defefc18d7 https://www.encodeproject.org/files/ENCFF457PTN/@@download/ENCFF457PTN.bam released s3://encode-public/2016/11/08/acd6cd37-3a77-4193-a592-3c012a2da031/ENCFF457PTN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF545DCS bam bam unfiltered alignments hg19 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1, 2_2 36 /files/ENCFF095YNS/, /files/ENCFF807MUK/, /files/ENCFF454MGO/ 4708109872 ENCODE Processing Pipeline 438abcc91d9a7a25078aae92aadbc01f https://www.encodeproject.org/files/ENCFF545DCS/@@download/ENCFF545DCS.bam released s3://encode-public/2016/11/08/6a01b3af-d70c-411e-aba6-0bedd3e578b0/ENCFF545DCS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF397IDT bam bam alignments hg19 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1, 2_2 36 /files/ENCFF095YNS/, /files/ENCFF807MUK/, /files/ENCFF454MGO/ 2834648588 ENCODE Processing Pipeline 4e8b981c5b6e296ba051fa87ca121bbd https://www.encodeproject.org/files/ENCFF397IDT/@@download/ENCFF397IDT.bam released s3://encode-public/2016/11/08/2d2a66c8-8338-4db8-a4d6-0d440425ca7e/ENCFF397IDT.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF970JAK bam bam alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 1 1_1 36 /files/ENCFF368OCV/, /files/ENCFF364BTA/, /files/ENCFF110MCL/, /files/ENCFF054IRC/ 1887941437 ENCODE Processing Pipeline 431666956a9b9981eb577a527ba18dfd https://www.encodeproject.org/files/ENCFF970JAK/@@download/ENCFF970JAK.bam released s3://encode-public/2020/09/17/37af1e1b-f740-4d21-b8d8-5a3421176f70/ENCFF970JAK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF863MOJ bam bam unfiltered alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1, 2_2 36 /files/ENCFF110MCL/, /files/ENCFF095YNS/, /files/ENCFF454MGO/ 4587129023 ENCODE Processing Pipeline 7e6c1c5cf0298c24ff6c26980d8aa163 https://www.encodeproject.org/files/ENCFF863MOJ/@@download/ENCFF863MOJ.bam released s3://encode-public/2020/09/17/9dda583a-dc9d-4baa-afe3-ed905bc40110/ENCFF863MOJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF388PUT bam bam alignments GRCh38 ENCSR255BOF Control ChIP-seq /human-donors/ENCDO568LPD/ EFO:0006283 KOPT-K1 cell line Homo sapiens DNA 2015-08-03 ENCODE 200-600 2 2_1, 2_2 36 /files/ENCFF110MCL/, /files/ENCFF095YNS/, /files/ENCFF454MGO/ 3075992901 ENCODE Processing Pipeline e915230f4ecb726a42b7e7f2420becc7 https://www.encodeproject.org/files/ENCFF388PUT/@@download/ENCFF388PUT.bam released s3://encode-public/2020/09/17/303d7b5e-d922-46ee-9385-0acbd1a63994/ENCFF388PUT.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths, low read length ENCFF802NOV fastq fastq reads ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 170605322 Kevin White, UChicago a3c1caad6950a974955bf7a045f147bd https://www.encodeproject.org/files/ENCFF802NOV/@@download/ENCFF802NOV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/2a10d193-02a2-4783-9e69-80ccdb8a4e5c/ENCFF802NOV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF527DTK fastq fastq reads ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 172870493 Kevin White, UChicago e008ae9750d691540a43b2343dc2c0ef https://www.encodeproject.org/files/ENCFF527DTK/@@download/ENCFF527DTK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/0560f98c-e3d8-4e4e-91e5-498bc5be0e79/ENCFF527DTK.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF883MLI bam bam alignments ce10 ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF802NOV/, /files/ENCFF527DTK/, /files/ENCFF987UMF/ 453316958 Kevin White, UChicago 10cc1cf22b909f2c7b3f41a01641adac https://www.encodeproject.org/files/ENCFF883MLI/@@download/ENCFF883MLI.bam released s3://encode-public/2017/04/27/4db78332-3924-4cab-8091-cddd674a89a1/ENCFF883MLI.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF452HBG bam bam alignments ce11 ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF802NOV/, /files/ENCFF527DTK/, /files/ENCFF586MOL/ 453800420 Kevin White, UChicago ac1e7b31625f999d09d24743422bba79 https://www.encodeproject.org/files/ENCFF452HBG/@@download/ENCFF452HBG.bam released s3://encode-public/2017/04/27/0c619e84-47e6-4ee2-841d-2685feb5b733/ENCFF452HBG.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF775ZUD bigWig bigWig read-depth normalized signal ce10 ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF883MLI/ 10033530 Kevin White, UChicago 02cbd555e29b914352872e2c869e5742 https://www.encodeproject.org/files/ENCFF775ZUD/@@download/ENCFF775ZUD.bigWig released s3://encode-public/2017/04/29/4ba05e3b-a9fc-4f6b-9bd5-9c4da65ed1da/ENCFF775ZUD.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF550XXD bigWig bigWig signal of unique reads ce10 ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF883MLI/ 10011970 Kevin White, UChicago 214a56897673f3a4b8cfe7bf846824bc https://www.encodeproject.org/files/ENCFF550XXD/@@download/ENCFF550XXD.bigWig released s3://encode-public/2017/04/29/ec5c465c-18e6-4c18-a296-91e64efc6ccc/ENCFF550XXD.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF914PFC bigWig bigWig signal of unique reads ce11 ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF452HBG/ 10007075 Kevin White, UChicago 93821389ba69a4f982626484b5930af9 https://www.encodeproject.org/files/ENCFF914PFC/@@download/ENCFF914PFC.bigWig released s3://encode-public/2017/04/29/9c7e3966-13a4-4cda-b7c6-66dacc6cf874/ENCFF914PFC.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF185DLK bigWig bigWig read-depth normalized signal ce11 ENCSR917HXG Control ChIP-seq /worm-donors/ENCDO077SSJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182874/'], '@type': ['Target', 'Item'], 'name': 'fkh-10-celegans', 'label': 'fkh-10', '@id': '/targets/fkh-10-celegans/', 'title': 'fkh-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ee4a1d4f-269f-4a07-ad76-73e96682cb2a', 'status': 'released'} DNA 2018-02-15 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF452HBG/ 10023154 Kevin White, UChicago 34051a0634af78bad6785fd2f90d502d https://www.encodeproject.org/files/ENCFF185DLK/@@download/ENCFF185DLK.bigWig released s3://encode-public/2017/04/29/62696c62-5060-4111-9154-e5b861f3f95a/ENCFF185DLK.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF441PKE fastq fastq reads ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2149544223 Bing Ren, UCSD cc1e35e1e91d5ad6a60b535cee48e206 SRA:SRR3651581 https://www.encodeproject.org/files/ENCFF441PKE/@@download/ENCFF441PKE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/475354dd-fea6-4d44-b051-1a75e7a0a8a8/ENCFF441PKE.fastq.gz ENCFF961WKK fastq fastq reads ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1831489114 Bing Ren, UCSD 9261de2ab2b0f36105d6985147c3261a SRA:SRR3651582 https://www.encodeproject.org/files/ENCFF961WKK/@@download/ENCFF961WKK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/f145cd23-c8c9-4ec7-a996-be125eb2eae8/ENCFF961WKK.fastq.gz ENCFF517ODV fastq fastq reads ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 407716419 Bing Ren, UCSD 8785f8e4d1f46757d71a627ee7428942 SRA:SRR3651583 https://www.encodeproject.org/files/ENCFF517ODV/@@download/ENCFF517ODV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/91b6cdd7-4a1f-456d-b505-eefaf91305e3/ENCFF517ODV.fastq.gz ENCFF028OLU bam bam alignments mm10-minimal ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF961WKK/, /files/ENCFF806TVZ/, /files/ENCFF517ODV/ 2263331670 ENCODE Processing Pipeline 02e0a55590df51a26366f2134bfa1d6e https://www.encodeproject.org/files/ENCFF028OLU/@@download/ENCFF028OLU.bam archived s3://encode-public/2016/03/29/6a4edfb6-17a3-4fce-8aa7-55ef12d89f07/ENCFF028OLU.bam ENCFF059DKF bam bam alignments mm10-minimal ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF806TVZ/, /files/ENCFF441PKE/ 2144162314 ENCODE Processing Pipeline 6a4a172e8951d3f9a8bc4c4e35c674b7 https://www.encodeproject.org/files/ENCFF059DKF/@@download/ENCFF059DKF.bam archived s3://encode-public/2016/03/29/793c5c90-79dd-4d12-8f6b-13c483a5a848/ENCFF059DKF.bam ENCFF904YNS bam bam unfiltered alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF441PKE/ 2976251043 ENCODE Processing Pipeline ca087d78183d51a10e933b77e2d1593c https://www.encodeproject.org/files/ENCFF904YNS/@@download/ENCFF904YNS.bam released s3://encode-public/2016/05/20/f2827aa0-458b-4d3e-b88a-6c2dd34f2fea/ENCFF904YNS.bam ENCODE3 mm10 archived ENCFF174CBX bam bam unfiltered alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF961WKK/, /files/ENCFF018NEO/, /files/ENCFF517ODV/ 3107240186 ENCODE Processing Pipeline 9e49aa7604de8b27829c9abe835c94cf https://www.encodeproject.org/files/ENCFF174CBX/@@download/ENCFF174CBX.bam released s3://encode-public/2016/05/20/9eee1874-ce57-4afb-babc-54e82907da25/ENCFF174CBX.bam ENCODE3 mm10 archived ENCFF387WDC bam bam alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF441PKE/ 2143696858 ENCODE Processing Pipeline 749e68951a0af7b99ca34b234de4e406 https://www.encodeproject.org/files/ENCFF387WDC/@@download/ENCFF387WDC.bam released s3://encode-public/2016/05/20/4c7f6359-7e38-4178-a880-fce3e121e5e3/ENCFF387WDC.bam ENCODE3 mm10 archived ENCFF570IJH bam bam alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF961WKK/, /files/ENCFF018NEO/, /files/ENCFF517ODV/ 2262820796 ENCODE Processing Pipeline 829e9c5b6131861bfbfed56720f72ff9 https://www.encodeproject.org/files/ENCFF570IJH/@@download/ENCFF570IJH.bam released s3://encode-public/2016/05/20/b1ea8368-6083-4912-abb0-1581dfda26a2/ENCFF570IJH.bam ENCODE3 mm10 archived ENCFF896JTY bam bam unfiltered alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF961WKK/, /files/ENCFF517ODV/ 2959612539 ENCODE Processing Pipeline 03947a5eef47a99f73be146bef87e9bb https://www.encodeproject.org/files/ENCFF896JTY/@@download/ENCFF896JTY.bam released s3://encode-public/2020/10/08/c78d6ac5-8897-49a7-9025-247315ed68b0/ENCFF896JTY.bam ENCODE4 v1.5.1 mm10 released ENCFF639CBX bam bam unfiltered alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF441PKE/ 2833139154 ENCODE Processing Pipeline 8927e0f7eb2a869d37fd739ec3f8f04a https://www.encodeproject.org/files/ENCFF639CBX/@@download/ENCFF639CBX.bam released s3://encode-public/2020/10/08/9e16bed7-08a7-44a6-bebe-493a53c01527/ENCFF639CBX.bam ENCODE4 v1.5.1 mm10 released ENCFF850KED bam bam alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF961WKK/, /files/ENCFF517ODV/ 2276319108 ENCODE Processing Pipeline e0486c4844f3913a85946bf02048c546 https://www.encodeproject.org/files/ENCFF850KED/@@download/ENCFF850KED.bam released s3://encode-public/2020/10/08/d4556494-761c-47ef-b1b8-a3766d44ea1a/ENCFF850KED.bam ENCODE4 v1.5.1 mm10 released ENCFF783PHI bam bam alignments mm10 ENCSR218CUA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002101 limb tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF441PKE/ 2155559741 ENCODE Processing Pipeline 6c5f3c73c850b12f698cd31446580a94 https://www.encodeproject.org/files/ENCFF783PHI/@@download/ENCFF783PHI.bam released s3://encode-public/2020/10/08/d095ccb0-338f-4448-ae66-372795da2ea2/ENCFF783PHI.bam ENCODE4 v1.5.1 mm10 released ENCFF174BWY fastq fastq reads ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 single-ended 1671441016 Bradley Bernstein, Broad ca0e2f10e27427db038cda98cb3941e2 SRA:SRR5331359 https://www.encodeproject.org/files/ENCFF174BWY/@@download/ENCFF174BWY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/145a2ef2-ee9b-40cd-a31a-87c8de8b36ad/ENCFF174BWY.fastq.gz ENCFF079PQP bam bam alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF174BWY/ 1712968115 ENCODE Processing Pipeline 11567311f9e2304ea49ad68cf75372be https://www.encodeproject.org/files/ENCFF079PQP/@@download/ENCFF079PQP.bam archived s3://encode-public/2016/04/23/27251cae-ea50-4455-bc85-36108639fa9a/ENCFF079PQP.bam ENCODE3 GRCh38 archived ENCFF765SNX bam bam unfiltered alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF174BWY/ 2023157501 ENCODE Processing Pipeline 359d862c8061208f49f8a7dc5443e6d2 https://www.encodeproject.org/files/ENCFF765SNX/@@download/ENCFF765SNX.bam archived s3://encode-public/2016/05/05/6ed561d9-de5d-4c4a-a2d0-dec3f4b34ab8/ENCFF765SNX.bam ENCODE3 GRCh38 archived ENCFF471FKL bam bam unfiltered alignments hg19 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF174BWY/ 2016415168 ENCODE Processing Pipeline a1dcd4563e98acc82a0f3369c27fa382 https://www.encodeproject.org/files/ENCFF471FKL/@@download/ENCFF471FKL.bam released s3://encode-public/2016/10/26/5543f02e-931e-4fc4-81d6-2e3aa95f5493/ENCFF471FKL.bam ENCODE3 hg19 archived ENCFF995SFR bam bam alignments hg19 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF174BWY/ 1710714771 ENCODE Processing Pipeline fba97d0c71f44c3079965c3056c989fe https://www.encodeproject.org/files/ENCFF995SFR/@@download/ENCFF995SFR.bam released s3://encode-public/2016/10/26/6ecd5262-5413-493c-9a21-607214cf4827/ENCFF995SFR.bam ENCODE3 hg19 archived ENCFF441IFZ bam bam unfiltered alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF174BWY/ 2023157537 ENCODE Processing Pipeline f0639d6c9a99e8bf6afc81495039ad31 https://www.encodeproject.org/files/ENCFF441IFZ/@@download/ENCFF441IFZ.bam released s3://encode-public/2019/08/28/3e4e8d62-3a8e-42b6-9a61-73f67e2f8014/ENCFF441IFZ.bam ENCODE3 GRCh38 archived ENCFF782SLJ bam bam alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF174BWY/ 1712968149 ENCODE Processing Pipeline 6cf43724b2c073cedec125c409114c64 https://www.encodeproject.org/files/ENCFF782SLJ/@@download/ENCFF782SLJ.bam released s3://encode-public/2019/08/28/5006e91f-4d5e-462d-84cd-aa230ce411ec/ENCFF782SLJ.bam ENCODE3 GRCh38 archived ENCFF790SWF bam bam unfiltered alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF174BWY/, /files/ENCFF110MCL/ 2041481835 ENCODE Processing Pipeline 3880318bfcfbdfce213f9e7a57566b58 https://www.encodeproject.org/files/ENCFF790SWF/@@download/ENCFF790SWF.bam released s3://encode-public/2020/08/20/94e8d466-56c0-4577-9be8-b76c8bb19f0e/ENCFF790SWF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF659FLH bam bam alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF174BWY/, /files/ENCFF110MCL/ 1751829403 ENCODE Processing Pipeline 84a3fd854b0ded12be02f250b36cd3fa https://www.encodeproject.org/files/ENCFF659FLH/@@download/ENCFF659FLH.bam released s3://encode-public/2020/08/20/a54fdb76-55f0-4327-9663-a4b75a853743/ENCFF659FLH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF326EQO bam bam unfiltered alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 72 /files/ENCFF174BWY/, /files/ENCFF110MCL/ 1974554204 ENCODE Processing Pipeline a98e6aba6a505037490c92f313167f57 https://www.encodeproject.org/files/ENCFF326EQO/@@download/ENCFF326EQO.bam released s3://encode-public/2020/12/10/bea0ae24-51fc-4a8d-8432-07f322daabb5/ENCFF326EQO.bam ENCODE4 v1.6.1 GRCh38 released ENCFF377PHV bam bam alignments GRCh38 ENCSR164POT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 72 /files/ENCFF174BWY/, /files/ENCFF110MCL/ 1688696641 ENCODE Processing Pipeline 916be4580a336479dbb313936c71dec6 https://www.encodeproject.org/files/ENCFF377PHV/@@download/ENCFF377PHV.bam released s3://encode-public/2020/12/10/2b277f71-d1f6-4142-bcb3-8418b3bea9c7/ENCFF377PHV.bam ENCODE4 v1.6.1 GRCh38 released ENCFF390IKC fastq fastq reads ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF885SDD/ 2400423054 Michael Snyder, Stanford e130c7d11cc5f44a92e2e4fd5f0aec17 SRA:SRR8660286 https://www.encodeproject.org/files/ENCFF390IKC/@@download/ENCFF390IKC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/8bad4c54-45d2-44a2-af7a-92a153f310be/ENCFF390IKC.fastq.gz mild to moderate bottlenecking ENCFF885SDD fastq fastq reads ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF390IKC/ 2373467546 Michael Snyder, Stanford 61f774e3c852fc4626d3d5c5f4362b86 SRA:SRR8660286 https://www.encodeproject.org/files/ENCFF885SDD/@@download/ENCFF885SDD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/3f6cf5f0-1418-41dc-8f8e-1c795c886cb9/ENCFF885SDD.fastq.gz mild to moderate bottlenecking ENCFF369DRL bam bam unfiltered alignments GRCh38 ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF885SDD/, /files/ENCFF390IKC/ 5152091428 ENCODE Processing Pipeline 9720a6169504dc23a355561b31711624 https://www.encodeproject.org/files/ENCFF369DRL/@@download/ENCFF369DRL.bam released s3://encode-public/2016/05/06/29e7c753-fa1d-4eac-9b2c-2f06acbfcaee/ENCFF369DRL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF267XIT bam bam alignments GRCh38 ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF885SDD/, /files/ENCFF390IKC/ 4186134476 ENCODE Processing Pipeline e6f9db724a8d209302b4f16399c5fa22 https://www.encodeproject.org/files/ENCFF267XIT/@@download/ENCFF267XIT.bam released s3://encode-public/2016/05/06/2a7386cd-5fba-476a-9023-9f1286b7edb7/ENCFF267XIT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF724CAN bam bam alignments hg19 ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF885SDD/, /files/ENCFF390IKC/ 4179286904 ENCODE Processing Pipeline 5678c5c17fd108569d5f61b87cbab6de https://www.encodeproject.org/files/ENCFF724CAN/@@download/ENCFF724CAN.bam released s3://encode-public/2016/12/06/11ff36aa-028f-4287-b31e-447a04b07e3b/ENCFF724CAN.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF138XUD bam bam unfiltered alignments hg19 ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF885SDD/, /files/ENCFF390IKC/ 5146243065 ENCODE Processing Pipeline 15ee6894cd2417c80cfd198cb4177833 https://www.encodeproject.org/files/ENCFF138XUD/@@download/ENCFF138XUD.bam released s3://encode-public/2016/12/06/be91193f-bd56-46a4-a587-2cd55c68b13f/ENCFF138XUD.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF013WMH bam bam unfiltered alignments GRCh38 ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF885SDD/, /files/ENCFF390IKC/ 5132807452 ENCODE Processing Pipeline 37cdfbbd4c000668085edeaca0386c77 https://www.encodeproject.org/files/ENCFF013WMH/@@download/ENCFF013WMH.bam released s3://encode-public/2020/06/03/ac96f87f-1bd5-4444-9569-45b46887a537/ENCFF013WMH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF841NDQ bam bam alignments GRCh38 ENCSR361LSG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF885SDD/, /files/ENCFF390IKC/ 4091896493 ENCODE Processing Pipeline 093f9b101cb83f515d6fa2d431f631e2 https://www.encodeproject.org/files/ENCFF841NDQ/@@download/ENCFF841NDQ.bam released s3://encode-public/2020/06/03/afdcab12-c723-4100-a04d-916a00e9fe74/ENCFF841NDQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF268OKN fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 368024585 Bradley Bernstein, Broad be7bec5d065173ce8e477871d5ce3673 SRA:SRR13804177 https://www.encodeproject.org/files/ENCFF268OKN/@@download/ENCFF268OKN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9a3bc6e2-5d9d-4790-b431-9807a30e8068/ENCFF268OKN.fastq.gz ENCFF615HVT fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 373663072 Bradley Bernstein, Broad 24b211123036f62882b535aa336f3a86 SRA:SRR13804178 https://www.encodeproject.org/files/ENCFF615HVT/@@download/ENCFF615HVT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a29de1dc-1761-40ea-a1ee-946fb7f122ed/ENCFF615HVT.fastq.gz ENCFF289SKU fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 363681039 Bradley Bernstein, Broad a53bc68d71a5c2cc6d297b4e96622545 SRA:SRR13804181 https://www.encodeproject.org/files/ENCFF289SKU/@@download/ENCFF289SKU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/71a5f279-0784-4e00-9000-16543d357c68/ENCFF289SKU.fastq.gz ENCFF924OJH fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 355939680 Bradley Bernstein, Broad 486b9902de153cdce6671d0328964709 SRA:SRR13804182 https://www.encodeproject.org/files/ENCFF924OJH/@@download/ENCFF924OJH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3b494afe-1c89-4bc9-995b-e0d40453f225/ENCFF924OJH.fastq.gz ENCFF507HSJ fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 375877351 Bradley Bernstein, Broad eb8eb85f13cd32c4532c9e2cc948afed SRA:SRR13804179 https://www.encodeproject.org/files/ENCFF507HSJ/@@download/ENCFF507HSJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/d780d467-391f-4b91-95fe-29e570ab387e/ENCFF507HSJ.fastq.gz ENCFF060TXE fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 380046146 Bradley Bernstein, Broad 62c9b0190c3756bc4fc9646c0f0e3222 SRA:SRR13804180 https://www.encodeproject.org/files/ENCFF060TXE/@@download/ENCFF060TXE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a744be82-908b-423b-99ea-94962932d785/ENCFF060TXE.fastq.gz ENCFF582WRY fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 363428721 Bradley Bernstein, Broad 110e9f863fbabf8aff8d5293007d40fe SRA:SRR13804183 https://www.encodeproject.org/files/ENCFF582WRY/@@download/ENCFF582WRY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3e6f8ce6-172e-4166-a811-7dadd2d4b377/ENCFF582WRY.fastq.gz ENCFF691TZU fastq fastq reads ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 369754207 Bradley Bernstein, Broad 020cc64e40a403bb8559c06a7914aff0 SRA:SRR13804184 https://www.encodeproject.org/files/ENCFF691TZU/@@download/ENCFF691TZU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/68ec8c0c-be39-45f9-b5ab-cca3402cf227/ENCFF691TZU.fastq.gz ENCFF856YCM bam bam unfiltered alignments GRCh38 ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF289SKU/, /files/ENCFF615HVT/, /files/ENCFF060TXE/, /files/ENCFF691TZU/, /files/ENCFF268OKN/, /files/ENCFF582WRY/, /files/ENCFF507HSJ/, /files/ENCFF924OJH/, /files/ENCFF110MCL/ 2880516690 ENCODE Processing Pipeline e0a84d120e8446c0c742c3694786281c https://www.encodeproject.org/files/ENCFF856YCM/@@download/ENCFF856YCM.bam released s3://encode-public/2020/06/14/5464d7ae-271b-409f-95d5-be3a60f77e03/ENCFF856YCM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF273EYI bam bam alignments GRCh38 ENCSR120ITZ Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF289SKU/, /files/ENCFF615HVT/, /files/ENCFF060TXE/, /files/ENCFF691TZU/, /files/ENCFF268OKN/, /files/ENCFF582WRY/, /files/ENCFF507HSJ/, /files/ENCFF924OJH/, /files/ENCFF110MCL/ 2381040121 ENCODE Processing Pipeline 674127b9b4ac8b83e905e105462b4d56 https://www.encodeproject.org/files/ENCFF273EYI/@@download/ENCFF273EYI.bam released s3://encode-public/2020/06/14/38a5ffbc-3c85-4e9d-ae45-3a2986ff243c/ENCFF273EYI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF296HGK fastq fastq reads ENCSR513QXU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1472'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9760/'], '@type': ['Target', 'Item'], 'name': 'TOX-human', 'label': 'TOX', '@id': '/targets/TOX-human/', 'title': 'TOX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '85766161-7e8e-4c46-842b-ac43f150f481', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF399VPA/ 2377100306 Michael Snyder, Stanford da69d45a651291e1dbcb032112b7ccda SRA:SRR14841932 https://www.encodeproject.org/files/ENCFF296HGK/@@download/ENCFF296HGK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/19/0cf88ce5-7646-4bf4-94ac-4e206efdc3ee/ENCFF296HGK.fastq.gz mild to moderate bottlenecking ENCFF399VPA fastq fastq reads ENCSR513QXU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1472'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9760/'], '@type': ['Target', 'Item'], 'name': 'TOX-human', 'label': 'TOX', '@id': '/targets/TOX-human/', 'title': 'TOX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '85766161-7e8e-4c46-842b-ac43f150f481', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF296HGK/ 2215076816 Michael Snyder, Stanford 7daf067d7649b19d801675aa0aaf93d0 SRA:SRR14841932 https://www.encodeproject.org/files/ENCFF399VPA/@@download/ENCFF399VPA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/19/36dfa84f-c025-4919-a2fe-e81a8ce2414b/ENCFF399VPA.fastq.gz mild to moderate bottlenecking ENCFF156OVI bam bam unfiltered alignments GRCh38 ENCSR513QXU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1472'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9760/'], '@type': ['Target', 'Item'], 'name': 'TOX-human', 'label': 'TOX', '@id': '/targets/TOX-human/', 'title': 'TOX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '85766161-7e8e-4c46-842b-ac43f150f481', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF399VPA/, /files/ENCFF296HGK/ 4454261631 ENCODE Processing Pipeline 3883a51021426ae5aaf44b93dbfff816 https://www.encodeproject.org/files/ENCFF156OVI/@@download/ENCFF156OVI.bam released s3://encode-public/2020/04/20/b87f4066-1e4c-461f-b630-e954f416c0a9/ENCFF156OVI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF829BFG bam bam alignments GRCh38 ENCSR513QXU Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1472'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9760/'], '@type': ['Target', 'Item'], 'name': 'TOX-human', 'label': 'TOX', '@id': '/targets/TOX-human/', 'title': 'TOX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '85766161-7e8e-4c46-842b-ac43f150f481', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF399VPA/, /files/ENCFF296HGK/ 3296811618 ENCODE Processing Pipeline e084d86de23a7aebde82f210cdce2ed6 https://www.encodeproject.org/files/ENCFF829BFG/@@download/ENCFF829BFG.bam released s3://encode-public/2020/04/20/9efb0731-87ed-4283-9473-573652feb0d5/ENCFF829BFG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF971RZS fastq fastq reads ENCSR749OUM Control ChIP-seq /worm-donors/ENCDO827HLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181357/'], '@type': ['Target', 'Item'], 'name': 'ttx-3-celegans', 'label': 'ttx-3', '@id': '/targets/ttx-3-celegans/', 'title': 'ttx-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a2bd825e-cd08-4dc4-a10b-3d28028072c7', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 1436587104 Kevin White, UChicago 3cb56c526c61606b26eb2a1f8c8b5d00 https://www.encodeproject.org/files/ENCFF971RZS/@@download/ENCFF971RZS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/09/e00664a9-9c8c-4e3b-afb5-a72c6c94a228/ENCFF971RZS.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF745JLE bam bam alignments ce10 ENCSR749OUM Control ChIP-seq /worm-donors/ENCDO827HLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181357/'], '@type': ['Target', 'Item'], 'name': 'ttx-3-celegans', 'label': 'ttx-3', '@id': '/targets/ttx-3-celegans/', 'title': 'ttx-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a2bd825e-cd08-4dc4-a10b-3d28028072c7', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF971RZS/ 1693895082 Kevin White, UChicago f7190917d99617154efb0021e83bccba https://www.encodeproject.org/files/ENCFF745JLE/@@download/ENCFF745JLE.bam released s3://encode-public/2016/05/10/0d19b61d-d9de-4db4-aec5-ecc46d015f43/ENCFF745JLE.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF985SWL bam bam alignments ce11 ENCSR749OUM Control ChIP-seq /worm-donors/ENCDO827HLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181357/'], '@type': ['Target', 'Item'], 'name': 'ttx-3-celegans', 'label': 'ttx-3', '@id': '/targets/ttx-3-celegans/', 'title': 'ttx-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a2bd825e-cd08-4dc4-a10b-3d28028072c7', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF971RZS/ 1695341362 Kevin White, UChicago 1b71482aa6ec94e3a275a161e658f4c8 https://www.encodeproject.org/files/ENCFF985SWL/@@download/ENCFF985SWL.bam released s3://encode-public/2016/05/10/ff79fbce-c966-4bb3-be11-1b90c39bcf0c/ENCFF985SWL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF079WHE bigWig bigWig signal of unique reads ce10 ENCSR749OUM Control ChIP-seq /worm-donors/ENCDO827HLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181357/'], '@type': ['Target', 'Item'], 'name': 'ttx-3-celegans', 'label': 'ttx-3', '@id': '/targets/ttx-3-celegans/', 'title': 'ttx-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a2bd825e-cd08-4dc4-a10b-3d28028072c7', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF745JLE/ 10037647 Kevin White, UChicago 64ffda8cee33e02124ab703592423d4b https://www.encodeproject.org/files/ENCFF079WHE/@@download/ENCFF079WHE.bigWig released s3://encode-public/2016/05/11/5b4ae16b-7e27-485a-a21e-75f267431c81/ENCFF079WHE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF650FAF bigWig bigWig read-depth normalized signal ce10 ENCSR749OUM Control ChIP-seq /worm-donors/ENCDO827HLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181357/'], '@type': ['Target', 'Item'], 'name': 'ttx-3-celegans', 'label': 'ttx-3', '@id': '/targets/ttx-3-celegans/', 'title': 'ttx-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a2bd825e-cd08-4dc4-a10b-3d28028072c7', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF745JLE/ 9975997 Kevin White, UChicago 6f456bb7a08e80240dec9b95aa47d9aa https://www.encodeproject.org/files/ENCFF650FAF/@@download/ENCFF650FAF.bigWig released s3://encode-public/2016/05/11/c87c1772-9da7-423a-8473-a81eb448d6be/ENCFF650FAF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF498VPD bigWig bigWig signal of unique reads ce11 ENCSR749OUM Control ChIP-seq /worm-donors/ENCDO827HLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181357/'], '@type': ['Target', 'Item'], 'name': 'ttx-3-celegans', 'label': 'ttx-3', '@id': '/targets/ttx-3-celegans/', 'title': 'ttx-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a2bd825e-cd08-4dc4-a10b-3d28028072c7', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF985SWL/ 10035003 Kevin White, UChicago 052cae6542a734e3c06cf91649002cd5 https://www.encodeproject.org/files/ENCFF498VPD/@@download/ENCFF498VPD.bigWig released s3://encode-public/2016/05/11/a95f3f3d-15bc-4f28-9c09-cd94ee71923f/ENCFF498VPD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF632XOB bigWig bigWig read-depth normalized signal ce11 ENCSR749OUM Control ChIP-seq /worm-donors/ENCDO827HLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181357/'], '@type': ['Target', 'Item'], 'name': 'ttx-3-celegans', 'label': 'ttx-3', '@id': '/targets/ttx-3-celegans/', 'title': 'ttx-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a2bd825e-cd08-4dc4-a10b-3d28028072c7', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF985SWL/ 9974250 Kevin White, UChicago f148692ae23410d19619da84d012c72e https://www.encodeproject.org/files/ENCFF632XOB/@@download/ENCFF632XOB.bigWig released s3://encode-public/2016/05/11/003e246d-c090-498a-a1da-f12b92aaaec2/ENCFF632XOB.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization ENCFF171RLO fastq fastq reads ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 145509248 Michael Snyder, Stanford 0711a191e34738f5d050a46d487e1039 https://www.encodeproject.org/files/ENCFF171RLO/@@download/ENCFF171RLO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/375e4c1c-7e51-45df-8d51-dd2468391a37/ENCFF171RLO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF896IMR fastq fastq reads ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 160454787 Michael Snyder, Stanford d71dfc74cf9f9d15ddd1550d0a228c18 https://www.encodeproject.org/files/ENCFF896IMR/@@download/ENCFF896IMR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/4db908b4-941f-4b00-8233-d4b5ee011080/ENCFF896IMR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF100CQZ bigWig bigWig signal of unique reads ce10 ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF281XNV/ 9991001 Kevin White, UChicago 3c22de945af5e6d9bbf251b118a61dd6 https://www.encodeproject.org/files/ENCFF100CQZ/@@download/ENCFF100CQZ.bigWig released s3://encode-public/2017/04/29/493017e9-6a2c-4355-8066-c6e459ec96a3/ENCFF100CQZ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF710ZMA bigWig bigWig read-depth normalized signal ce10 ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF281XNV/ 10033956 Kevin White, UChicago e8ac2b75f478c5dafce01c6d3e5eab7f https://www.encodeproject.org/files/ENCFF710ZMA/@@download/ENCFF710ZMA.bigWig released s3://encode-public/2017/04/29/0d60cc0d-b57d-4251-82b2-828034ae60af/ENCFF710ZMA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF281XNV bam bam alignments ce10 ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF896IMR/, /files/ENCFF171RLO/, /files/ENCFF987UMF/ 329970993 Kevin White, UChicago 018c6aa158f754e4691df8739e6fffc0 https://www.encodeproject.org/files/ENCFF281XNV/@@download/ENCFF281XNV.bam released s3://encode-public/2018/01/05/52398e14-6740-47a3-8325-448faa0b7661/ENCFF281XNV.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF535MVU bam bam alignments ce11 ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF896IMR/, /files/ENCFF171RLO/, /files/ENCFF586MOL/ 330246659 Kevin White, UChicago 94211f39fd9e47e48c732c0a8b1f1e8c https://www.encodeproject.org/files/ENCFF535MVU/@@download/ENCFF535MVU.bam released s3://encode-public/2018/01/05/eba6f2e7-e56f-4a0b-aa8f-db119a248664/ENCFF535MVU.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF656IMR bigWig bigWig signal of unique reads ce11 ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF535MVU/ 9988400 Kevin White, UChicago a22ac570f569dfa8dcf93859872e9c97 https://www.encodeproject.org/files/ENCFF656IMR/@@download/ENCFF656IMR.bigWig released s3://encode-public/2018/01/22/056fb220-ba78-48ff-9cc0-92f14a8201d0/ENCFF656IMR.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF309HHS bigWig bigWig read-depth normalized signal ce11 ENCSR640BRI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF535MVU/ 10035104 Kevin White, UChicago 4d06fadea46c2b4b28b229079a996756 https://www.encodeproject.org/files/ENCFF309HHS/@@download/ENCFF309HHS.bigWig released s3://encode-public/2018/01/22/420ff681-7e17-4c9c-86a3-69e8b7fd503a/ENCFF309HHS.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF240YUE fastq fastq reads ENCSR113XNT Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 153302000 Kevin White, UChicago 0213a24c81ab1e00983eb83de72db69b https://www.encodeproject.org/files/ENCFF240YUE/@@download/ENCFF240YUE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF494BOK/ released s3://encode-public/2015/07/30/35b1cf23-dd85-482a-ab4a-18dbc460a29a/ENCFF240YUE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF348AGQ bam bam alignments ce10 ENCSR113XNT Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF240YUE/ 201371019 Kevin White, UChicago 7ec40f8b757b45a96e09a6300c09488a https://www.encodeproject.org/files/ENCFF348AGQ/@@download/ENCFF348AGQ.bam released s3://encode-public/2015/08/19/cd74fceb-a436-41ad-9e5b-1354b9129b89/ENCFF348AGQ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF243BKW bigWig bigWig signal of unique reads ce10 ENCSR113XNT Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF348AGQ/ 10030973 Kevin White, UChicago 17d7de6a690069783e34afb13cefbed9 https://www.encodeproject.org/files/ENCFF243BKW/@@download/ENCFF243BKW.bigWig released s3://encode-public/2015/10/02/1aa870e8-b48d-4af7-bf09-1d407192855d/ENCFF243BKW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF265WHN bigWig bigWig read-depth normalized signal ce10 ENCSR113XNT Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF348AGQ/ 10040040 Kevin White, UChicago 72f05b752284e7d599ab276307842f93 https://www.encodeproject.org/files/ENCFF265WHN/@@download/ENCFF265WHN.bigWig released s3://encode-public/2015/10/02/61a15520-532e-4690-be0e-7efbab1266d2/ENCFF265WHN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF433UCG bam bam alignments ce11 ENCSR113XNT Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF240YUE/ 201602061 Kevin White, UChicago 852894450def252884a35b675a1911b7 https://www.encodeproject.org/files/ENCFF433UCG/@@download/ENCFF433UCG.bam released s3://encode-public/2016/01/17/b787c423-9ca4-4cf3-b3d7-60c1ac352890/ENCFF433UCG.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF678MTG bigWig bigWig signal of unique reads ce11 ENCSR113XNT Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF433UCG/ 10028825 Kevin White, UChicago 18f50b31b394ba306608ed28200153e1 https://www.encodeproject.org/files/ENCFF678MTG/@@download/ENCFF678MTG.bigWig released s3://encode-public/2016/02/03/c597e911-8048-4b07-b1f0-cf4e9574369b/ENCFF678MTG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF571BZA bigWig bigWig read-depth normalized signal ce11 ENCSR113XNT Control ChIP-seq /worm-donors/ENCDO958UOX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177157/'], '@type': ['Target', 'Item'], 'name': 'hlh-30-celegans', 'label': 'hlh-30', '@id': '/targets/hlh-30-celegans/', 'title': 'hlh-30 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdf91a16-d618-4c33-9492-600efa593859', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF433UCG/ 10034535 Kevin White, UChicago 1d84deb74e385b2464616da1a70c7801 https://www.encodeproject.org/files/ENCFF571BZA/@@download/ENCFF571BZA.bigWig released s3://encode-public/2016/02/03/43dbce48-03e8-45a1-9466-64609c972281/ENCFF571BZA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF442WPU fastq fastq reads ENCSR345LWU Control ChIP-seq /fly-donors/ENCDO725CJS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42059/'], '@type': ['Target', 'Item'], 'name': 'Dad-dmelanogaster', 'label': 'Dad', '@id': '/targets/Dad-dmelanogaster/', 'title': 'Dad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '485a919e-ee5f-4f5a-a246-10a7598a6e8e', 'status': 'released'} dm3 3R 12878914 12901370 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 509884115 Kevin White, UChicago 307a05fa0e1e4896ea1da656947584fa https://www.encodeproject.org/files/ENCFF442WPU/@@download/ENCFF442WPU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/81640f60-06b2-4cc4-8906-56b897f83553/ENCFF442WPU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF517GFC bam bam alignments dm3 ENCSR345LWU Control ChIP-seq /fly-donors/ENCDO725CJS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42059/'], '@type': ['Target', 'Item'], 'name': 'Dad-dmelanogaster', 'label': 'Dad', '@id': '/targets/Dad-dmelanogaster/', 'title': 'Dad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '485a919e-ee5f-4f5a-a246-10a7598a6e8e', 'status': 'released'} dm3 3R 12878914 12901370 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF442WPU/ 759624664 Kevin White, UChicago 5eab27a8f447a5bf4d3d3b8cbabd8609 https://www.encodeproject.org/files/ENCFF517GFC/@@download/ENCFF517GFC.bam released s3://encode-public/2015/08/05/ddfdce74-1ab9-4633-9de0-5a751caefc6a/ENCFF517GFC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF227EMQ bigWig bigWig read-depth normalized signal dm3 ENCSR345LWU Control ChIP-seq /fly-donors/ENCDO725CJS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42059/'], '@type': ['Target', 'Item'], 'name': 'Dad-dmelanogaster', 'label': 'Dad', '@id': '/targets/Dad-dmelanogaster/', 'title': 'Dad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '485a919e-ee5f-4f5a-a246-10a7598a6e8e', 'status': 'released'} dm3 3R 12878914 12901370 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF517GFC/ 15363198 Kevin White, UChicago 2990536da2804fdbf8e9939c3d53ce6d https://www.encodeproject.org/files/ENCFF227EMQ/@@download/ENCFF227EMQ.bigWig released s3://encode-public/2015/10/05/cdaafbd0-d164-43b4-86e3-bc4ea89790bd/ENCFF227EMQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF817ZBL bigWig bigWig signal of unique reads dm3 ENCSR345LWU Control ChIP-seq /fly-donors/ENCDO725CJS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42059/'], '@type': ['Target', 'Item'], 'name': 'Dad-dmelanogaster', 'label': 'Dad', '@id': '/targets/Dad-dmelanogaster/', 'title': 'Dad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '485a919e-ee5f-4f5a-a246-10a7598a6e8e', 'status': 'released'} dm3 3R 12878914 12901370 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF517GFC/ 15321746 Kevin White, UChicago 074308c381457ddfee1c12e8f4e8af03 https://www.encodeproject.org/files/ENCFF817ZBL/@@download/ENCFF817ZBL.bigWig released s3://encode-public/2015/10/05/07e6ae55-f179-4ed1-b761-8a9332741761/ENCFF817ZBL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF948DRV bam bam alignments dm6 ENCSR345LWU Control ChIP-seq /fly-donors/ENCDO725CJS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42059/'], '@type': ['Target', 'Item'], 'name': 'Dad-dmelanogaster', 'label': 'Dad', '@id': '/targets/Dad-dmelanogaster/', 'title': 'Dad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '485a919e-ee5f-4f5a-a246-10a7598a6e8e', 'status': 'released'} dm3 3R 12878914 12901370 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF442WPU/ 756357937 Kevin White, UChicago 55bac9d07ba8c7f96b49b2143096680c https://www.encodeproject.org/files/ENCFF948DRV/@@download/ENCFF948DRV.bam released s3://encode-public/2016/04/21/280956f7-b8ac-485c-b1dc-31bfc85fb30a/ENCFF948DRV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF973SJR bigWig bigWig signal of unique reads dm6 ENCSR345LWU Control ChIP-seq /fly-donors/ENCDO725CJS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42059/'], '@type': ['Target', 'Item'], 'name': 'Dad-dmelanogaster', 'label': 'Dad', '@id': '/targets/Dad-dmelanogaster/', 'title': 'Dad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '485a919e-ee5f-4f5a-a246-10a7598a6e8e', 'status': 'released'} dm3 3R 12878914 12901370 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF948DRV/ 17419466 Kevin White, UChicago 4380788abba5de51d2f23bee6c614a7d https://www.encodeproject.org/files/ENCFF973SJR/@@download/ENCFF973SJR.bigWig released s3://encode-public/2016/06/20/802abdfc-1ede-40ec-9bc4-b717e90da8cd/ENCFF973SJR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF223LKM bigWig bigWig read-depth normalized signal dm6 ENCSR345LWU Control ChIP-seq /fly-donors/ENCDO725CJS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42059/'], '@type': ['Target', 'Item'], 'name': 'Dad-dmelanogaster', 'label': 'Dad', '@id': '/targets/Dad-dmelanogaster/', 'title': 'Dad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '485a919e-ee5f-4f5a-a246-10a7598a6e8e', 'status': 'released'} dm3 3R 12878914 12901370 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF948DRV/ 17482861 Kevin White, UChicago f12a3317e86069e725343e070c01c501 https://www.encodeproject.org/files/ENCFF223LKM/@@download/ENCFF223LKM.bigWig released s3://encode-public/2016/06/20/c15fad89-8c9b-4f39-a37f-c1673d2bc69d/ENCFF223LKM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF205PZM fastq fastq reads ENCSR756AFC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 1019640321 Kevin White, UChicago d5175af0361bd6fec1fd93fbc2bf91f9 https://www.encodeproject.org/files/ENCFF205PZM/@@download/ENCFF205PZM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/d6e71eb6-6275-4169-a1b0-c3e907638de4/ENCFF205PZM.fastq.gz ENCFF977ELF bam bam alignments dm3 ENCSR756AFC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF205PZM/ 1249742571 Kevin White, UChicago 6af743f487f73bae4ad249e9074de3ff https://www.encodeproject.org/files/ENCFF977ELF/@@download/ENCFF977ELF.bam released s3://encode-public/2017/06/19/086b0ac8-5d64-42cc-bdf1-6e0ca9188117/ENCFF977ELF.bam Lab custom dm3 archived ENCFF284KLK bam bam alignments dm6 ENCSR756AFC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF205PZM/ 1242954052 Kevin White, UChicago 7c344ce6d749c05bc1077682d649fdcd https://www.encodeproject.org/files/ENCFF284KLK/@@download/ENCFF284KLK.bam released s3://encode-public/2017/06/28/b63ad07f-dbe0-436a-b387-db89ec73325a/ENCFF284KLK.bam Lab custom dm6 released ENCFF747DSO bigWig bigWig signal of unique reads dm3 ENCSR756AFC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF977ELF/ 15403175 Kevin White, UChicago c7e5d61dce0a18a68bab09cb4f5d03d6 https://www.encodeproject.org/files/ENCFF747DSO/@@download/ENCFF747DSO.bigWig released s3://encode-public/2017/06/29/00ef44d6-0848-498b-86f2-50f15e785ce6/ENCFF747DSO.bigWig Lab custom dm3 archived ENCFF597PCY bigWig bigWig read-depth normalized signal dm3 ENCSR756AFC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF977ELF/ 15409139 Kevin White, UChicago 8dfbb9cd4e9b7159c2b8decd63852e05 https://www.encodeproject.org/files/ENCFF597PCY/@@download/ENCFF597PCY.bigWig released s3://encode-public/2017/06/29/7db2d506-214f-45d2-abe1-425dc782d1f1/ENCFF597PCY.bigWig Lab custom dm3 archived ENCFF242TXR bigWig bigWig read-depth normalized signal dm6 ENCSR756AFC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF284KLK/ 17616190 Kevin White, UChicago b3688623bf66cce9079c09b09f234d97 https://www.encodeproject.org/files/ENCFF242TXR/@@download/ENCFF242TXR.bigWig released s3://encode-public/2017/06/30/09367023-c1f4-4851-85ce-b808d1127107/ENCFF242TXR.bigWig Lab custom dm6 released ENCFF799WIO bigWig bigWig signal of unique reads dm6 ENCSR756AFC Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF284KLK/ 17596521 Kevin White, UChicago bdbda1185a8d9821eaccb5d88dc4e845 https://www.encodeproject.org/files/ENCFF799WIO/@@download/ENCFF799WIO.bigWig released s3://encode-public/2017/06/30/04014c13-9722-4402-93af-d0b48ff0f6ec/ENCFF799WIO.bigWig Lab custom dm6 released ENCFF770PBO fastq fastq reads ENCSR389SQZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1486126523 Richard Myers, HAIB 76f953e8cbf33b458b6dc95bbf8eb1f9 SRA:SRR5111527 https://www.encodeproject.org/files/ENCFF770PBO/@@download/ENCFF770PBO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/fde042c2-0205-4300-924a-3d3dc1ceae64/ENCFF770PBO.fastq.gz ENCFF316NAE bam bam unfiltered alignments mm10 ENCSR389SQZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF770PBO/ 1627260024 ENCODE Processing Pipeline 1ff4054dcba974451d2d1b2e9edda10b https://www.encodeproject.org/files/ENCFF316NAE/@@download/ENCFF316NAE.bam released s3://encode-public/2016/05/20/935b195e-3e7f-4bd0-8554-010b6b198325/ENCFF316NAE.bam ENCODE3 mm10 archived ENCFF697QBG bam bam alignments mm10 ENCSR389SQZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF770PBO/ 1264356128 ENCODE Processing Pipeline 2aad9ea6e8bf8c057bf802f6d78894e8 https://www.encodeproject.org/files/ENCFF697QBG/@@download/ENCFF697QBG.bam released s3://encode-public/2016/05/20/385cb116-667e-4b81-b8ad-cf8324857f5f/ENCFF697QBG.bam ENCODE3 mm10 archived ENCFF190TJE bam bam unfiltered alignments mm10 ENCSR389SQZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF770PBO/ 1609605298 ENCODE Processing Pipeline b8f9d03147bc9a0c6b9a2995f7f641a9 https://www.encodeproject.org/files/ENCFF190TJE/@@download/ENCFF190TJE.bam released s3://encode-public/2020/10/08/9e017b3c-5859-4d96-8c1f-45b4c99e2729/ENCFF190TJE.bam ENCODE4 v1.5.1 mm10 released ENCFF094JDK bam bam alignments mm10 ENCSR389SQZ Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF770PBO/ 1310875975 ENCODE Processing Pipeline e0fc5f9c90b8af7f5d4f98df4e5d252a https://www.encodeproject.org/files/ENCFF094JDK/@@download/ENCFF094JDK.bam released s3://encode-public/2020/10/08/0e9a7e58-0a92-4615-aff5-f7ce7bb04ce8/ENCFF094JDK.bam ENCODE4 v1.5.1 mm10 released ENCFF387AKI fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 437801689 Bradley Bernstein, Broad 05575e611451b858c7bb6635cfb473e5 SRA:SRR14105610 https://www.encodeproject.org/files/ENCFF387AKI/@@download/ENCFF387AKI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/44afeb39-8141-4875-824e-e0fb8eeb7772/ENCFF387AKI.fastq.gz ENCFF431WZT fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 463179743 Bradley Bernstein, Broad 3ee33148b0854b12d438b24ef56e1790 SRA:SRR14105614 https://www.encodeproject.org/files/ENCFF431WZT/@@download/ENCFF431WZT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a1bf09a4-1d03-4e4a-91e5-99aa09c34ac8/ENCFF431WZT.fastq.gz ENCFF359IOS fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 479009584 Bradley Bernstein, Broad 40d7264f645766e23cde0efe196e5e09 SRA:SRR14105611 https://www.encodeproject.org/files/ENCFF359IOS/@@download/ENCFF359IOS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7f765a79-05d4-46dc-99d8-95efff9112e8/ENCFF359IOS.fastq.gz ENCFF849KFT fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 465698379 Bradley Bernstein, Broad f15d3bb97cc1da73ba55b2e4bb16a2da SRA:SRR14105615 https://www.encodeproject.org/files/ENCFF849KFT/@@download/ENCFF849KFT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/65125f08-a098-4256-859c-239b092ebb18/ENCFF849KFT.fastq.gz ENCFF377TXL fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 75 single-ended 389936497 Bradley Bernstein, Broad 76b02400c23b8327e3a5b8951f835241 SRA:SRR14105606 https://www.encodeproject.org/files/ENCFF377TXL/@@download/ENCFF377TXL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e8a41212-26f3-4d5b-8f28-27e92fb04fa7/ENCFF377TXL.fastq.gz ENCFF447WFO fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 476316552 Bradley Bernstein, Broad 9752a8f1ebc66f22bcfdcdc773fdca17 SRA:SRR14105612 https://www.encodeproject.org/files/ENCFF447WFO/@@download/ENCFF447WFO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5325ae77-1071-4e02-a9a5-d0893771faec/ENCFF447WFO.fastq.gz ENCFF944TRA fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 457536934 Bradley Bernstein, Broad 09b2a238b2fe4b84dbf0475abf87e42d SRA:SRR14105613 https://www.encodeproject.org/files/ENCFF944TRA/@@download/ENCFF944TRA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/08136fbc-06e9-40a1-b852-a10e56d108ef/ENCFF944TRA.fastq.gz ENCFF513SGR fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 444166777 Bradley Bernstein, Broad 9b3602ceed817e3d4bad05a3a97e5fff SRA:SRR14105616 https://www.encodeproject.org/files/ENCFF513SGR/@@download/ENCFF513SGR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/f0f50b46-fd64-4746-8cff-f1330d2838e6/ENCFF513SGR.fastq.gz ENCFF114CZV fastq fastq reads ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 425645006 Bradley Bernstein, Broad abbf93b0b22e56d55184a43157a28d9f SRA:SRR14105617 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ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF513SGR/, /files/ENCFF359IOS/, /files/ENCFF387AKI/, /files/ENCFF114CZV/, /files/ENCFF110MCL/, /files/ENCFF447WFO/, /files/ENCFF849KFT/, /files/ENCFF944TRA/, /files/ENCFF431WZT/ 3570667886 ENCODE Processing Pipeline c070158f8077d6068fad9d6e6c009d3f https://www.encodeproject.org/files/ENCFF366ASV/@@download/ENCFF366ASV.bam released s3://encode-public/2020/06/14/35733eeb-62c1-4c80-850b-20680fb23dba/ENCFF366ASV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF264COF bam bam alignments GRCh38 ENCSR542JNY Control ChIP-seq /human-donors/ENCDO737WWC/ EFO:0009318 HFFc6 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF513SGR/, /files/ENCFF359IOS/, /files/ENCFF387AKI/, /files/ENCFF114CZV/, /files/ENCFF110MCL/, /files/ENCFF447WFO/, /files/ENCFF849KFT/, /files/ENCFF944TRA/, /files/ENCFF431WZT/ 2992059933 ENCODE Processing Pipeline 084249488823883a9e0f82b3a0170b1f https://www.encodeproject.org/files/ENCFF264COF/@@download/ENCFF264COF.bam released s3://encode-public/2020/06/14/81da5a7a-3d18-4b70-a892-a2aac90de982/ENCFF264COF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF672HNR bam bam unfiltered alignments hg19 ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF114DVM/, /files/ENCFF807MUK/, /files/ENCFF622ATI/ 6483361697 ENCODE Processing Pipeline a6d2053c1a8129e267563b253168fbf3 https://www.encodeproject.org/files/ENCFF672HNR/@@download/ENCFF672HNR.bam released s3://encode-public/2018/02/21/16b027cf-41ff-4b81-9b9a-0ae67a35df5d/ENCFF672HNR.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF622ATI fastq fastq reads ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF114DVM/ 3034398447 Michael Snyder, Stanford 676e8729e7bfd99c3161bf54fe24f325 SRA:SRR5112075 https://www.encodeproject.org/files/ENCFF622ATI/@@download/ENCFF622ATI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/877bcc6e-a550-4270-ae96-22bb7d4168c1/ENCFF622ATI.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF114DVM fastq fastq reads ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF622ATI/ 3125402603 Michael Snyder, Stanford c9792dfe7e633f5aae10fdb26802c450 SRA:SRR5112075 https://www.encodeproject.org/files/ENCFF114DVM/@@download/ENCFF114DVM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/309d83c1-1cc1-4e2a-808b-bfdd97fdc7b2/ENCFF114DVM.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF242FHJ bam bam alignments hg19 ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF114DVM/, /files/ENCFF807MUK/, /files/ENCFF622ATI/ 5113606837 ENCODE Processing Pipeline 9b0be47c95c9236a66ea4b9e355e4d14 https://www.encodeproject.org/files/ENCFF242FHJ/@@download/ENCFF242FHJ.bam released s3://encode-public/2016/01/15/db30c9a9-7e01-4394-8e8a-afe28d91aece/ENCFF242FHJ.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF968WGN bam bam unfiltered alignments GRCh38 ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF114DVM/, /files/ENCFF622ATI/, /files/ENCFF643CGH/ 6492693980 ENCODE Processing Pipeline 2ef75f5427c2a70180ef508e6ddefa6b https://www.encodeproject.org/files/ENCFF968WGN/@@download/ENCFF968WGN.bam released s3://encode-public/2016/05/06/58f02c02-5ac0-4b3c-8f3f-f5819145b14a/ENCFF968WGN.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF059OPC bam bam alignments GRCh38 ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 101 /files/ENCFF114DVM/, /files/ENCFF622ATI/, /files/ENCFF643CGH/ 5117256547 ENCODE Processing Pipeline f659af6efb67e2cf1facc24bafd0c152 https://www.encodeproject.org/files/ENCFF059OPC/@@download/ENCFF059OPC.bam released s3://encode-public/2016/05/06/dd1f6266-71f5-4399-933c-aca4552378f0/ENCFF059OPC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF749HIM bam bam unfiltered alignments GRCh38 ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF622ATI/, /files/ENCFF114DVM/ 6423659204 ENCODE Processing Pipeline 86dd699c6127189ff037171dd5f1391d https://www.encodeproject.org/files/ENCFF749HIM/@@download/ENCFF749HIM.bam released s3://encode-public/2020/06/13/a8ace2dc-b356-47df-a11e-5fca6beb1854/ENCFF749HIM.bam ENCODE4 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF259VMX bam bam alignments GRCh38 ENCSR781GAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3399/'], '@type': ['Target', 'Item'], 'name': 'ID3-human', 'label': 'ID3', '@id': '/targets/ID3-human/', 'title': 'ID3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '986b2e7a-8829-4301-82f7-7228e17d6670', 'status': 'released'} DNA 2016-02-16 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF622ATI/, /files/ENCFF114DVM/ 4842973425 ENCODE Processing Pipeline 15049b8d2a5bff75666babc2e15a7194 https://www.encodeproject.org/files/ENCFF259VMX/@@download/ENCFF259VMX.bam released s3://encode-public/2020/06/13/b6e7f7fb-3c17-4de7-bf15-7ff01459937c/ENCFF259VMX.bam ENCODE4 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF951WSO fastq fastq reads ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF960XDG/ 1782560611 Richard Myers, HAIB f05cf8bd69dc31c7900daf6d686e9401 SRA:SRR6214174 https://www.encodeproject.org/files/ENCFF951WSO/@@download/ENCFF951WSO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/d98a8aa3-294e-49d2-9b2c-1e4a94e5cfd3/ENCFF951WSO.fastq.gz ENCFF960XDG fastq fastq reads ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF951WSO/ 1814050177 Richard Myers, HAIB ab70aa348420fc2928abe5dd2238e063 SRA:SRR6214174 https://www.encodeproject.org/files/ENCFF960XDG/@@download/ENCFF960XDG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/422fa463-bfcb-476a-bff0-780d27b389f6/ENCFF960XDG.fastq.gz ENCFF318TKK bam bam unfiltered alignments hg19 ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960XDG/, /files/ENCFF807MUK/, /files/ENCFF951WSO/ 4413779983 ENCODE Processing Pipeline b7ab3090eba175624fb3e6b8a0f9ea13 https://www.encodeproject.org/files/ENCFF318TKK/@@download/ENCFF318TKK.bam released s3://encode-public/2017/02/02/f5418f8f-76da-4b52-b590-f420b0588e91/ENCFF318TKK.bam ENCODE3 hg19 archived ENCFF816CIP bam bam alignments hg19 ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960XDG/, /files/ENCFF807MUK/, /files/ENCFF951WSO/ 3028927125 ENCODE Processing Pipeline e556ae2e3655edbf2965f978de2fe0dc https://www.encodeproject.org/files/ENCFF816CIP/@@download/ENCFF816CIP.bam released s3://encode-public/2017/02/02/2a580ebb-dea8-437c-851e-4f2aade45ef9/ENCFF816CIP.bam ENCODE3 hg19 archived ENCFF126WZA bam bam unfiltered alignments GRCh38 ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960XDG/, /files/ENCFF643CGH/, /files/ENCFF951WSO/ 4437112192 ENCODE Processing Pipeline 499082ba9a07adb394bacea106d5c6e4 https://www.encodeproject.org/files/ENCFF126WZA/@@download/ENCFF126WZA.bam released s3://encode-public/2017/02/02/9597aa13-ada5-4670-a711-947ab46f88e5/ENCFF126WZA.bam ENCODE3 GRCh38 archived ENCFF991TPT bam bam alignments GRCh38 ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960XDG/, /files/ENCFF643CGH/, /files/ENCFF951WSO/ 3032329418 ENCODE Processing Pipeline b1b1a8175d57e95c804e03dd84463040 https://www.encodeproject.org/files/ENCFF991TPT/@@download/ENCFF991TPT.bam released s3://encode-public/2017/02/02/5a3461c5-3ea4-4465-a126-522cf3afd67d/ENCFF991TPT.bam ENCODE3 GRCh38 archived ENCFF789SNF bam bam unfiltered alignments GRCh38 ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF951WSO/, /files/ENCFF960XDG/ 4404205042 ENCODE Processing Pipeline 998fc6e49c9344a21ada40ef535e9d23 https://www.encodeproject.org/files/ENCFF789SNF/@@download/ENCFF789SNF.bam released s3://encode-public/2020/06/06/61b3ecb9-a294-4871-89d6-05d67820533e/ENCFF789SNF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF920OPU bam bam alignments GRCh38 ENCSR976KYQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF951WSO/, /files/ENCFF960XDG/ 2856261656 ENCODE Processing Pipeline 47abbb8ea72a2daa1b926c73ee528228 https://www.encodeproject.org/files/ENCFF920OPU/@@download/ENCFF920OPU.bam released s3://encode-public/2020/06/06/d9ade0cf-ee9c-4132-af34-59d7258a13b3/ENCFF920OPU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF565IOH fastq fastq reads ENCSR621FPD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 single-ended 2947334600 Richard Myers, HAIB 712a9e4c3baa2588ee13ab20d30519e7 SRA:SRR14107676 https://www.encodeproject.org/files/ENCFF565IOH/@@download/ENCFF565IOH.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/05/27/5710e9cc-e258-401b-8110-fce3dfea4d01/ENCFF565IOH.fastq.gz mild to moderate bottlenecking ENCFF948BXK bam bam unfiltered alignments GRCh38 ENCSR621FPD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF565IOH/, /files/ENCFF110MCL/ 2915267158 ENCODE Processing Pipeline 5c8677d891c62f944b2c2caa44fa217e https://www.encodeproject.org/files/ENCFF948BXK/@@download/ENCFF948BXK.bam released s3://encode-public/2020/08/12/b18a6dbf-f7ef-4b0b-8afc-c13dc9dd7227/ENCFF948BXK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF262VZR bam bam alignments GRCh38 ENCSR621FPD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF565IOH/, /files/ENCFF110MCL/ 1262594419 ENCODE Processing Pipeline 0b699e68bee4bbb3029693b31aed6834 https://www.encodeproject.org/files/ENCFF262VZR/@@download/ENCFF262VZR.bam released s3://encode-public/2020/08/12/e5b70a44-0544-4090-a334-e43447eb46d5/ENCFF262VZR.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF969MGP fastq fastq reads ENCSR720LUX Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 single-ended 240216184 Kevin White, UChicago 104f2c851d76388b09605a58028f9b5a https://www.encodeproject.org/files/ENCFF969MGP/@@download/ENCFF969MGP.fastq.gz Illumina Genome Analyzer /files/ENCFF308BNL/ released s3://encode-public/2017/12/22/78ce5776-ee2b-4a10-b5a8-9cb3be1f6438/ENCFF969MGP.fastq.gz ENCFF256ZSM bam bam alignments dm3 ENCSR720LUX Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF969MGP/, /files/ENCFF059UHX/ 253294616 Kevin White, UChicago 5472425e17295d80ccf8cfb798b380bb https://www.encodeproject.org/files/ENCFF256ZSM/@@download/ENCFF256ZSM.bam released s3://encode-public/2017/12/22/ae91b1e7-5792-45e1-931d-c74f3b8089b4/ENCFF256ZSM.bam Lab custom dm3 archived ENCFF567FLZ bam bam alignments dm6 ENCSR720LUX Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF969MGP/, /files/ENCFF479RCH/ 249646615 Kevin White, UChicago 0be99d6ff78f75ddf0e3efe1e184971e https://www.encodeproject.org/files/ENCFF567FLZ/@@download/ENCFF567FLZ.bam released s3://encode-public/2017/12/24/5d88c740-efde-4def-af2d-87b1571216f4/ENCFF567FLZ.bam Lab custom dm6 released ENCFF179VFO bigWig bigWig read-depth normalized signal dm3 ENCSR720LUX Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF256ZSM/ 15145356 Kevin White, UChicago 5d387ce7c8abfee9f485c35c2b8b55b1 https://www.encodeproject.org/files/ENCFF179VFO/@@download/ENCFF179VFO.bigWig released s3://encode-public/2017/12/24/1fe8b6e3-2226-444a-abc5-d9bae26ebeb0/ENCFF179VFO.bigWig Lab custom dm3 archived ENCFF252LLY bigWig bigWig signal of unique reads dm3 ENCSR720LUX Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF256ZSM/ 15148079 Kevin White, UChicago 099172214de27678e5f49f64a3ca93e0 https://www.encodeproject.org/files/ENCFF252LLY/@@download/ENCFF252LLY.bigWig released s3://encode-public/2017/12/24/665e86ce-e988-49d7-bc3e-3b7cd10814db/ENCFF252LLY.bigWig Lab custom dm3 archived ENCFF617IRK bigWig bigWig read-depth normalized signal dm6 ENCSR720LUX Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF567FLZ/ 17308187 Kevin White, UChicago 2c9d7e037973a4debf41851834c1a9ab https://www.encodeproject.org/files/ENCFF617IRK/@@download/ENCFF617IRK.bigWig released s3://encode-public/2017/12/24/9b3e1bba-0e47-4c57-b2d2-bf297e9cb09a/ENCFF617IRK.bigWig Lab custom dm6 released ENCFF412EJK bigWig bigWig signal of unique reads dm6 ENCSR720LUX Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF567FLZ/ 17316964 Kevin White, UChicago 2567a0d60793afaa124c405129fe91ec https://www.encodeproject.org/files/ENCFF412EJK/@@download/ENCFF412EJK.bigWig released s3://encode-public/2017/12/24/035211b8-f3b9-4aef-805a-d3be5650a50e/ENCFF412EJK.bigWig Lab custom dm6 released ENCFF463RPN fastq fastq reads ENCSR964VKV Control ChIP-seq /fly-donors/ENCDO275CPZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34784/'], '@type': ['Target', 'Item'], 'name': 'CG16863-dmelanogaster', 'label': 'CG16863', '@id': '/targets/CG16863-dmelanogaster/', 'title': 'CG16863 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b92c7f63-6649-4275-88d6-57af6fc9d1fa', 'status': 'released'} dm3 2L 13779242 13800566 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 324971596 Kevin White, UChicago 3d63d99993788c27b1b267ddb39d2b7b https://www.encodeproject.org/files/ENCFF463RPN/@@download/ENCFF463RPN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/fdc62403-a14e-4818-a807-d9422a8e3bc4/ENCFF463RPN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF695DLD bam bam alignments dm3 ENCSR964VKV Control ChIP-seq /fly-donors/ENCDO275CPZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34784/'], '@type': ['Target', 'Item'], 'name': 'CG16863-dmelanogaster', 'label': 'CG16863', '@id': '/targets/CG16863-dmelanogaster/', 'title': 'CG16863 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b92c7f63-6649-4275-88d6-57af6fc9d1fa', 'status': 'released'} dm3 2L 13779242 13800566 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF463RPN/ 484359120 Kevin White, UChicago 718cdef7472558951155157fe95e8ba3 https://www.encodeproject.org/files/ENCFF695DLD/@@download/ENCFF695DLD.bam released s3://encode-public/2015/08/03/380afaf5-75af-4386-b27a-45fda49ac0c5/ENCFF695DLD.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF005MNW bigWig bigWig read-depth normalized signal dm3 ENCSR964VKV Control ChIP-seq /fly-donors/ENCDO275CPZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34784/'], '@type': ['Target', 'Item'], 'name': 'CG16863-dmelanogaster', 'label': 'CG16863', '@id': '/targets/CG16863-dmelanogaster/', 'title': 'CG16863 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b92c7f63-6649-4275-88d6-57af6fc9d1fa', 'status': 'released'} dm3 2L 13779242 13800566 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF695DLD/ 15218053 Kevin White, UChicago c0526353c4444709b4141b5bbaa5225f https://www.encodeproject.org/files/ENCFF005MNW/@@download/ENCFF005MNW.bigWig released s3://encode-public/2015/10/06/5d30a08a-f5fc-41cd-a16e-e9178befd216/ENCFF005MNW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF442HVX bigWig bigWig signal of unique reads dm3 ENCSR964VKV Control ChIP-seq /fly-donors/ENCDO275CPZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34784/'], '@type': ['Target', 'Item'], 'name': 'CG16863-dmelanogaster', 'label': 'CG16863', '@id': '/targets/CG16863-dmelanogaster/', 'title': 'CG16863 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b92c7f63-6649-4275-88d6-57af6fc9d1fa', 'status': 'released'} dm3 2L 13779242 13800566 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF695DLD/ 15287403 Kevin White, UChicago 5431aa4eee8b218ae24e20352b86a2db https://www.encodeproject.org/files/ENCFF442HVX/@@download/ENCFF442HVX.bigWig released s3://encode-public/2015/10/06/3d98041d-ed1e-48c1-9ca6-d9c9d58a3706/ENCFF442HVX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF906JZI bam bam alignments dm6 ENCSR964VKV Control ChIP-seq /fly-donors/ENCDO275CPZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34784/'], '@type': ['Target', 'Item'], 'name': 'CG16863-dmelanogaster', 'label': 'CG16863', '@id': '/targets/CG16863-dmelanogaster/', 'title': 'CG16863 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b92c7f63-6649-4275-88d6-57af6fc9d1fa', 'status': 'released'} dm3 2L 13779242 13800566 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF463RPN/ 482700365 Kevin White, UChicago 339410330afb2fa2459b9e60c934b8ca https://www.encodeproject.org/files/ENCFF906JZI/@@download/ENCFF906JZI.bam released s3://encode-public/2016/04/20/e697a9c0-8462-4eac-9992-b6fb3930ea67/ENCFF906JZI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF687LOH bigWig bigWig read-depth normalized signal dm6 ENCSR964VKV Control ChIP-seq /fly-donors/ENCDO275CPZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34784/'], '@type': ['Target', 'Item'], 'name': 'CG16863-dmelanogaster', 'label': 'CG16863', '@id': '/targets/CG16863-dmelanogaster/', 'title': 'CG16863 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b92c7f63-6649-4275-88d6-57af6fc9d1fa', 'status': 'released'} dm3 2L 13779242 13800566 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF906JZI/ 17320487 Kevin White, UChicago 2b34451142288ccdae290cd7afea859a https://www.encodeproject.org/files/ENCFF687LOH/@@download/ENCFF687LOH.bigWig released s3://encode-public/2016/06/21/c1341fbb-708d-427a-a697-aa1123d4b610/ENCFF687LOH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF638ZFP bigWig bigWig signal of unique reads dm6 ENCSR964VKV Control ChIP-seq /fly-donors/ENCDO275CPZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34784/'], '@type': ['Target', 'Item'], 'name': 'CG16863-dmelanogaster', 'label': 'CG16863', '@id': '/targets/CG16863-dmelanogaster/', 'title': 'CG16863 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b92c7f63-6649-4275-88d6-57af6fc9d1fa', 'status': 'released'} dm3 2L 13779242 13800566 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF906JZI/ 17421106 Kevin White, UChicago f13ec5834c755c2742fa228a10c30631 https://www.encodeproject.org/files/ENCFF638ZFP/@@download/ENCFF638ZFP.bigWig released s3://encode-public/2016/06/21/b06dea3f-9831-4221-9475-4332ea35b918/ENCFF638ZFP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF557FQM fastq fastq reads ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 196729234 Michael Snyder, Stanford b42ad7c285c863c70d41a64f362126b3 https://www.encodeproject.org/files/ENCFF557FQM/@@download/ENCFF557FQM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/a33b7748-024c-4454-9ce5-bd45216cdb87/ENCFF557FQM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF685RDM fastq fastq reads ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 196086459 Michael Snyder, Stanford 0b5ea327e8026b7a611c199af98ccad4 https://www.encodeproject.org/files/ENCFF685RDM/@@download/ENCFF685RDM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/86c06098-3342-4a8e-9ec2-8ff2e12135dc/ENCFF685RDM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF687KDT bam bam alignments ce10 ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF557FQM/, /files/ENCFF685RDM/, /files/ENCFF987UMF/ 478606833 Kevin White, UChicago 3079b09bc34c519f9cf294029c7a5f6d https://www.encodeproject.org/files/ENCFF687KDT/@@download/ENCFF687KDT.bam released s3://encode-public/2017/04/27/d2bb344a-d16b-4592-b10d-f664fcae5ecd/ENCFF687KDT.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF549NDO bam bam alignments ce11 ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF557FQM/, /files/ENCFF685RDM/, /files/ENCFF586MOL/ 479048726 Kevin White, UChicago ddf7169c4b7991a81b62760cc3104ded https://www.encodeproject.org/files/ENCFF549NDO/@@download/ENCFF549NDO.bam released s3://encode-public/2017/04/28/f90b8a40-f385-4bb9-ae7d-8b1341ea109c/ENCFF549NDO.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF243HYU bigWig bigWig signal of unique reads ce10 ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF687KDT/ 10028132 Kevin White, UChicago a717a318612a2f0ef29115279b785fed https://www.encodeproject.org/files/ENCFF243HYU/@@download/ENCFF243HYU.bigWig released s3://encode-public/2017/04/29/43419623-d25b-43d6-9c2d-320c82460f25/ENCFF243HYU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF331HZF bigWig bigWig read-depth normalized signal ce10 ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF687KDT/ 9987764 Kevin White, UChicago 40b44aee8ea233c8391e22d4e7653ec6 https://www.encodeproject.org/files/ENCFF331HZF/@@download/ENCFF331HZF.bigWig released s3://encode-public/2017/04/29/1480eadd-cf3c-44b8-8974-73218184b710/ENCFF331HZF.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF277ZWK bigWig bigWig signal of unique reads ce11 ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF549NDO/ 10024789 Kevin White, UChicago 20a7192f3b868168307445f0cfdb31af https://www.encodeproject.org/files/ENCFF277ZWK/@@download/ENCFF277ZWK.bigWig released s3://encode-public/2017/04/29/1f4025e3-03fb-4e9b-88e5-99c65b85d9dc/ENCFF277ZWK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF604KUK bigWig bigWig read-depth normalized signal ce11 ENCSR398GAE Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF549NDO/ 9982627 Kevin White, UChicago b4d2cf04001eb969cb1dba0e767d4bd3 https://www.encodeproject.org/files/ENCFF604KUK/@@download/ENCFF604KUK.bigWig released s3://encode-public/2017/04/29/241de8ad-6152-4c70-8584-43512e53cb0d/ENCFF604KUK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF854DQJ fastq fastq reads ENCSR915XAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF830'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/91603/'], '@type': ['Target', 'Item'], 'label': 'ZNF830', 'title': 'ZNF830 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '304c4ebe-b015-4459-aebe-dc7f9cfa3d33', 'schema_version': '14', 'name': 'ZNF830-human', '@id': '/targets/ZNF830-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF848IPN/ 2981838909 Michael Snyder, Stanford f77356556ff12feb465e406f99cdb1d9 SRA:SRR14839578 https://www.encodeproject.org/files/ENCFF854DQJ/@@download/ENCFF854DQJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/24/db45aaf1-f5f2-490c-9967-ea3b5308e322/ENCFF854DQJ.fastq.gz ENCFF848IPN fastq fastq reads ENCSR915XAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF830'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/91603/'], '@type': ['Target', 'Item'], 'label': 'ZNF830', 'title': 'ZNF830 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '304c4ebe-b015-4459-aebe-dc7f9cfa3d33', 'schema_version': '14', 'name': 'ZNF830-human', '@id': '/targets/ZNF830-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF854DQJ/ 2324550844 Michael Snyder, Stanford d147385d1e0080a64be4f38e49cceaf2 SRA:SRR14839578 https://www.encodeproject.org/files/ENCFF848IPN/@@download/ENCFF848IPN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/24/7ebe4007-ef01-414a-9e8d-ed28d5a6a953/ENCFF848IPN.fastq.gz ENCFF274SBZ bam bam unfiltered alignments GRCh38 ENCSR915XAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF830'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/91603/'], '@type': ['Target', 'Item'], 'label': 'ZNF830', 'title': 'ZNF830 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '304c4ebe-b015-4459-aebe-dc7f9cfa3d33', 'schema_version': '14', 'name': 'ZNF830-human', '@id': '/targets/ZNF830-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF848IPN/, /files/ENCFF854DQJ/ 5481876394 ENCODE Processing Pipeline a7bc287f057522426eef4d4e8d1dbfd5 https://www.encodeproject.org/files/ENCFF274SBZ/@@download/ENCFF274SBZ.bam released s3://encode-public/2020/05/15/14297f6c-0025-40e4-853a-02d21453755f/ENCFF274SBZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF887QJI bam bam alignments GRCh38 ENCSR915XAG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF830'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/91603/'], '@type': ['Target', 'Item'], 'label': 'ZNF830', 'title': 'ZNF830 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '304c4ebe-b015-4459-aebe-dc7f9cfa3d33', 'schema_version': '14', 'name': 'ZNF830-human', '@id': '/targets/ZNF830-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF848IPN/, /files/ENCFF854DQJ/ 4151361942 ENCODE Processing Pipeline 9824909db2130497c43e35ad82d4dac1 https://www.encodeproject.org/files/ENCFF887QJI/@@download/ENCFF887QJI.bam released s3://encode-public/2020/05/15/c0df213d-68dd-4938-ba5c-d983f8d28744/ENCFF887QJI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF354CHN fastq fastq reads ENCSR850AXK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1127382888 Kevin White, UChicago 12800c233d19470d86ca891af1daa5ec https://www.encodeproject.org/files/ENCFF354CHN/@@download/ENCFF354CHN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/17/c3cb31c5-a89d-4247-beb8-15f9f3fbe37f/ENCFF354CHN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF815HPL bam bam alignments dm3 ENCSR850AXK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF354CHN/ 1403496968 Kevin White, UChicago 47dbff4aa610b36c3afcd270feaa2db6 https://www.encodeproject.org/files/ENCFF815HPL/@@download/ENCFF815HPL.bam released s3://encode-public/2017/07/05/93894739-197c-41d3-8d33-55d6871899d0/ENCFF815HPL.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF986IPI bam bam alignments dm6 ENCSR850AXK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF354CHN/ 1398228647 Kevin White, UChicago 352e8377a93f9ae47cfed2171b90ac7e https://www.encodeproject.org/files/ENCFF986IPI/@@download/ENCFF986IPI.bam released s3://encode-public/2017/07/06/77a2dba4-260d-4e4d-a287-cb368c4a2802/ENCFF986IPI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF177RDE bigWig bigWig read-depth normalized signal dm3 ENCSR850AXK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF815HPL/ 15381726 Kevin White, UChicago 0d98eba0e91219625036bdc0ae52a6f3 https://www.encodeproject.org/files/ENCFF177RDE/@@download/ENCFF177RDE.bigWig released s3://encode-public/2017/07/06/0977a7d2-4f33-42b1-a336-7acbd97314da/ENCFF177RDE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF471BLI bigWig bigWig signal of unique reads dm3 ENCSR850AXK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF815HPL/ 15371489 Kevin White, UChicago 93e5b3821682cf13ea0c3f85b03e454e https://www.encodeproject.org/files/ENCFF471BLI/@@download/ENCFF471BLI.bigWig released s3://encode-public/2017/07/06/a189e726-e9c2-4227-90b3-3aee844f8a42/ENCFF471BLI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF598KKJ bigWig bigWig signal of unique reads dm6 ENCSR850AXK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF986IPI/ 17534482 Kevin White, UChicago 9fdee2338f673906a0bbf8e3ce0dfc5d https://www.encodeproject.org/files/ENCFF598KKJ/@@download/ENCFF598KKJ.bigWig released s3://encode-public/2017/07/07/82d9b52f-67a6-4323-bb5c-e9b56815e3fe/ENCFF598KKJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF197DYU bigWig bigWig read-depth normalized signal dm6 ENCSR850AXK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF986IPI/ 17542546 Kevin White, UChicago fdc26f0e9a1b2626d0d87cd943f82208 https://www.encodeproject.org/files/ENCFF197DYU/@@download/ENCFF197DYU.bigWig released s3://encode-public/2017/07/07/f0f0228a-1638-40cf-b6cd-c335b9193dee/ENCFF197DYU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF255YKQ fastq fastq reads ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 40257886 Michael Snyder, Stanford e1e2048ec4403f82dba3d59d8ce5951b https://www.encodeproject.org/files/ENCFF255YKQ/@@download/ENCFF255YKQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/861df3c9-48de-4e10-9b65-a6ccfb630efb/ENCFF255YKQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF213YDI fastq fastq reads ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 44817566 Michael Snyder, Stanford 805aa7932706fa58a192d1995b1cb9ff https://www.encodeproject.org/files/ENCFF213YDI/@@download/ENCFF213YDI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/69e2d353-88cb-470d-9737-419abf2dbe74/ENCFF213YDI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF179NZA fastq fastq reads ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 108187641 Michael Snyder, Stanford 033652264340c5c3102e213aaf6c91a0 https://www.encodeproject.org/files/ENCFF179NZA/@@download/ENCFF179NZA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/e6494243-1a44-4468-a32e-46bac010663b/ENCFF179NZA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF620PEK fastq fastq reads ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 3 3_1 32 single-ended 67615439 Michael Snyder, Stanford 95dae42ff4d83d9e03bcec708f9c0e0c https://www.encodeproject.org/files/ENCFF620PEK/@@download/ENCFF620PEK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/29dcb901-5d31-4743-929d-5c57f01cb0b0/ENCFF620PEK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF381ZOB bam bam alignments ce10 ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF255YKQ/, /files/ENCFF213YDI/, /files/ENCFF179NZA/, /files/ENCFF987UMF/, /files/ENCFF620PEK/ 294475520 Kevin White, UChicago 022b9e688c4670b566ba18216104de45 https://www.encodeproject.org/files/ENCFF381ZOB/@@download/ENCFF381ZOB.bam released s3://encode-public/2017/04/27/e60e6bcd-39aa-4be0-90b6-98e3f612bb5a/ENCFF381ZOB.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF725GNG bam bam alignments ce11 ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF255YKQ/, /files/ENCFF213YDI/, /files/ENCFF179NZA/, /files/ENCFF586MOL/, /files/ENCFF620PEK/ 294733143 Kevin White, UChicago e86e3b5b22ac33fef4d8124db207f799 https://www.encodeproject.org/files/ENCFF725GNG/@@download/ENCFF725GNG.bam released s3://encode-public/2017/04/27/5e99758a-e0cb-4b2e-84b0-370f0166c308/ENCFF725GNG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF901JUS bigWig bigWig read-depth normalized signal ce10 ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF381ZOB/ 9977525 Kevin White, UChicago 8dc5bce4bbcdbb907875e857f04c05a9 https://www.encodeproject.org/files/ENCFF901JUS/@@download/ENCFF901JUS.bigWig released s3://encode-public/2017/04/29/3065e13f-6dc5-4e76-bf80-70f66d0b6147/ENCFF901JUS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF034KXS bigWig bigWig signal of unique reads ce10 ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF381ZOB/ 9963607 Kevin White, UChicago b8d62322120287d2babb5246c91f9f68 https://www.encodeproject.org/files/ENCFF034KXS/@@download/ENCFF034KXS.bigWig released s3://encode-public/2017/04/29/4845b5cc-7def-435b-b647-85adce42731e/ENCFF034KXS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF847WIS bigWig bigWig signal of unique reads ce11 ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF725GNG/ 9959010 Kevin White, UChicago 0c4cec0738aecf41bc675d30f41c27c2 https://www.encodeproject.org/files/ENCFF847WIS/@@download/ENCFF847WIS.bigWig released s3://encode-public/2017/04/29/e2fb85e8-6dff-4946-a865-fa5f4c9cbacb/ENCFF847WIS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF199PWR bigWig bigWig read-depth normalized signal ce11 ENCSR185LPO Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF725GNG/ 9975715 Kevin White, UChicago f527ae6b19a62cd5e8b496a90acea88f https://www.encodeproject.org/files/ENCFF199PWR/@@download/ENCFF199PWR.bigWig released s3://encode-public/2017/04/29/5f506b26-31a6-4613-ad08-f29e059f8de1/ENCFF199PWR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF917PIL fastq fastq reads ENCSR348EIP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5087/'], '@type': ['Target', 'Item'], 'name': 'PBX1-human', 'label': 'PBX1', '@id': '/targets/PBX1-human/', 'title': 'PBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fe71ebd-bc17-4f60-899d-77b25a815655', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF716EXR/ 2381335106 Michael Snyder, Stanford c780b9b2740bb8bf50efc5c99cb8e42f SRA:SRR14105465 https://www.encodeproject.org/files/ENCFF917PIL/@@download/ENCFF917PIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/cf3f6755-d295-4690-ae20-aeec47446928/ENCFF917PIL.fastq.gz mild to moderate bottlenecking ENCFF716EXR fastq fastq reads ENCSR348EIP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5087/'], '@type': ['Target', 'Item'], 'name': 'PBX1-human', 'label': 'PBX1', '@id': '/targets/PBX1-human/', 'title': 'PBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fe71ebd-bc17-4f60-899d-77b25a815655', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF917PIL/ 2189534498 Michael Snyder, Stanford 6b6be2c1374d87ee06c8af09a1893cfd SRA:SRR14105465 https://www.encodeproject.org/files/ENCFF716EXR/@@download/ENCFF716EXR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/92523663-c455-4b7c-a21f-0fdf681e0060/ENCFF716EXR.fastq.gz mild to moderate bottlenecking ENCFF901IEE bam bam unfiltered alignments GRCh38 ENCSR348EIP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5087/'], '@type': ['Target', 'Item'], 'name': 'PBX1-human', 'label': 'PBX1', '@id': '/targets/PBX1-human/', 'title': 'PBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fe71ebd-bc17-4f60-899d-77b25a815655', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF716EXR/, /files/ENCFF917PIL/ 4451997946 ENCODE Processing Pipeline 49c05c4710ea42df51fd86c93316be96 https://www.encodeproject.org/files/ENCFF901IEE/@@download/ENCFF901IEE.bam released s3://encode-public/2020/04/21/065b5f28-9276-4bff-ad84-004ea0b30f09/ENCFF901IEE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF337ALG bam bam alignments GRCh38 ENCSR348EIP Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5087/'], '@type': ['Target', 'Item'], 'name': 'PBX1-human', 'label': 'PBX1', '@id': '/targets/PBX1-human/', 'title': 'PBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6fe71ebd-bc17-4f60-899d-77b25a815655', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF716EXR/, /files/ENCFF917PIL/ 3585370882 ENCODE Processing Pipeline 0af96e19924e696ced187b4cdae96ecc https://www.encodeproject.org/files/ENCFF337ALG/@@download/ENCFF337ALG.bam released s3://encode-public/2020/04/21/999cf762-a589-4060-8c06-b8defbae08ce/ENCFF337ALG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF318ZUK fastq fastq reads ENCSR929IRK Control ChIP-seq /fly-donors/ENCDO132JOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44669/'], '@type': ['Target', 'Item'], 'name': 'cwo-dmelanogaster', 'label': 'cwo', '@id': '/targets/cwo-dmelanogaster/', 'title': 'cwo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b5fd38c6-ce60-4195-abaa-a092e6c266ef', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 418159244 Kevin White, UChicago ec0d95b98fec405bd975b96f3cb63e6b https://www.encodeproject.org/files/ENCFF318ZUK/@@download/ENCFF318ZUK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/de0cfe09-6161-4292-94da-48fd0b02fa2b/ENCFF318ZUK.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF005AMV bam bam alignments dm3 ENCSR929IRK Control ChIP-seq /fly-donors/ENCDO132JOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44669/'], '@type': ['Target', 'Item'], 'name': 'cwo-dmelanogaster', 'label': 'cwo', '@id': '/targets/cwo-dmelanogaster/', 'title': 'cwo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b5fd38c6-ce60-4195-abaa-a092e6c266ef', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF318ZUK/ 559998922 Kevin White, UChicago 9aea90d8808eb0421a4f93b810adce36 https://www.encodeproject.org/files/ENCFF005AMV/@@download/ENCFF005AMV.bam released s3://encode-public/2017/09/12/8edb27ff-c3fb-4b52-b995-e6abeef69f2b/ENCFF005AMV.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF948YSO bigWig bigWig read-depth normalized signal dm3 ENCSR929IRK Control ChIP-seq /fly-donors/ENCDO132JOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44669/'], '@type': ['Target', 'Item'], 'name': 'cwo-dmelanogaster', 'label': 'cwo', '@id': '/targets/cwo-dmelanogaster/', 'title': 'cwo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b5fd38c6-ce60-4195-abaa-a092e6c266ef', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF005AMV/ 15265557 Kevin White, UChicago 41c6957c56860cd3f99754eb5efb9498 https://www.encodeproject.org/files/ENCFF948YSO/@@download/ENCFF948YSO.bigWig released s3://encode-public/2017/09/14/82d6b0b2-2643-4ea6-87fb-b5e520b4be69/ENCFF948YSO.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF102OFM bigWig bigWig signal of unique reads dm3 ENCSR929IRK Control ChIP-seq /fly-donors/ENCDO132JOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44669/'], '@type': ['Target', 'Item'], 'name': 'cwo-dmelanogaster', 'label': 'cwo', '@id': '/targets/cwo-dmelanogaster/', 'title': 'cwo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b5fd38c6-ce60-4195-abaa-a092e6c266ef', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF005AMV/ 15262964 Kevin White, UChicago 7d387354f103e6263b00f989f5eae60e https://www.encodeproject.org/files/ENCFF102OFM/@@download/ENCFF102OFM.bigWig released s3://encode-public/2017/09/14/c2bf80d0-8432-412c-acc9-162d5197d470/ENCFF102OFM.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF850SCC bam bam alignments dm6 ENCSR929IRK Control ChIP-seq /fly-donors/ENCDO132JOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44669/'], '@type': ['Target', 'Item'], 'name': 'cwo-dmelanogaster', 'label': 'cwo', '@id': '/targets/cwo-dmelanogaster/', 'title': 'cwo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b5fd38c6-ce60-4195-abaa-a092e6c266ef', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF318ZUK/ 554315663 Kevin White, UChicago 48eefec7b4a21996f775f8df7a21b297 https://www.encodeproject.org/files/ENCFF850SCC/@@download/ENCFF850SCC.bam released s3://encode-public/2017/09/18/7da3f03e-0f2c-4371-ab26-43049904050b/ENCFF850SCC.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF841KAR bigWig bigWig signal of unique reads dm6 ENCSR929IRK Control ChIP-seq /fly-donors/ENCDO132JOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44669/'], '@type': ['Target', 'Item'], 'name': 'cwo-dmelanogaster', 'label': 'cwo', '@id': '/targets/cwo-dmelanogaster/', 'title': 'cwo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b5fd38c6-ce60-4195-abaa-a092e6c266ef', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF850SCC/ 17462108 Kevin White, UChicago 87605a6126d753e658eb5cd475ebbb89 https://www.encodeproject.org/files/ENCFF841KAR/@@download/ENCFF841KAR.bigWig released s3://encode-public/2017/09/18/bc80b1ee-33bd-4a25-9207-13c59a7f6e60/ENCFF841KAR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF242PFA bigWig bigWig read-depth normalized signal dm6 ENCSR929IRK Control ChIP-seq /fly-donors/ENCDO132JOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44669/'], '@type': ['Target', 'Item'], 'name': 'cwo-dmelanogaster', 'label': 'cwo', '@id': '/targets/cwo-dmelanogaster/', 'title': 'cwo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b5fd38c6-ce60-4195-abaa-a092e6c266ef', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF850SCC/ 17444075 Kevin White, UChicago 6a4af50345580bd203d060685cbccdd0 https://www.encodeproject.org/files/ENCFF242PFA/@@download/ENCFF242PFA.bigWig released s3://encode-public/2017/09/18/029464a7-8137-4433-87c5-e44984c1925a/ENCFF242PFA.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF153LIR fastq fastq reads ENCSR924ZXB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 single-ended 702995788 Kevin White, UChicago 2cd9c34e193dbe9a16807078dc3a209b https://www.encodeproject.org/files/ENCFF153LIR/@@download/ENCFF153LIR.fastq.gz Illumina Genome Analyzer /files/ENCFF963ULK/ released s3://encode-public/2017/12/22/f7cb94da-2dd6-4260-b8f6-0ca1ea511bf0/ENCFF153LIR.fastq.gz ENCFF896SNN bam bam alignments dm3 ENCSR924ZXB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF153LIR/, /files/ENCFF059UHX/ 906846462 Kevin White, UChicago 27f576355da05520920f45bb680f2776 https://www.encodeproject.org/files/ENCFF896SNN/@@download/ENCFF896SNN.bam released s3://encode-public/2017/12/22/1d8e72f9-89c9-490b-8165-09419163e713/ENCFF896SNN.bam Lab custom dm3 archived ENCFF722CQX bam bam alignments dm6 ENCSR924ZXB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF153LIR/, /files/ENCFF479RCH/ 899898305 Kevin White, UChicago 030a7c31cb182ac589211453594ecc2a https://www.encodeproject.org/files/ENCFF722CQX/@@download/ENCFF722CQX.bam released s3://encode-public/2017/12/24/b609043d-10aa-4901-8c86-c358500a9c3c/ENCFF722CQX.bam Lab custom dm6 released ENCFF025TXY bigWig bigWig signal of unique reads dm3 ENCSR924ZXB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF896SNN/ 15401901 Kevin White, UChicago 7e37aed73939acb2660cafcc73e6b245 https://www.encodeproject.org/files/ENCFF025TXY/@@download/ENCFF025TXY.bigWig released s3://encode-public/2017/12/24/889be3d7-b6f0-4e90-850f-6c9c2fef52c6/ENCFF025TXY.bigWig Lab custom dm3 archived ENCFF616AVJ bigWig bigWig read-depth normalized signal dm3 ENCSR924ZXB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF896SNN/ 15403289 Kevin White, UChicago c159a713c0a518c0333547d75828c50d https://www.encodeproject.org/files/ENCFF616AVJ/@@download/ENCFF616AVJ.bigWig released s3://encode-public/2017/12/24/78831a0a-5197-4edb-8b02-b1f65bf65347/ENCFF616AVJ.bigWig Lab custom dm3 archived ENCFF643UCM bigWig bigWig signal of unique reads dm6 ENCSR924ZXB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF722CQX/ 17586863 Kevin White, UChicago c188d04f2b1d0b9037ac77e69785c954 https://www.encodeproject.org/files/ENCFF643UCM/@@download/ENCFF643UCM.bigWig released s3://encode-public/2017/12/24/7a1d3822-9295-41d2-9a2f-076c4ccde06e/ENCFF643UCM.bigWig Lab custom dm6 released ENCFF927GDU bigWig bigWig read-depth normalized signal dm6 ENCSR924ZXB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF722CQX/ 17584142 Kevin White, UChicago ba27effbf94351d2844e9d741d563bda https://www.encodeproject.org/files/ENCFF927GDU/@@download/ENCFF927GDU.bigWig released s3://encode-public/2017/12/24/02f473c0-bdec-4d2c-a2b4-413fec44ffa4/ENCFF927GDU.bigWig Lab custom dm6 released ENCFF782CXY fastq fastq reads ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 701455610 Kevin White, UChicago 360819b4c1dee8605eeb973378b92908 https://www.encodeproject.org/files/ENCFF782CXY/@@download/ENCFF782CXY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/bb21b265-d977-4244-abd8-b2fbb03d06c8/ENCFF782CXY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF180QHY fastq fastq reads ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 50 single-ended 666321851 Kevin White, UChicago 53c37d596c39f9eb0e4460fa0bd1fd97 https://www.encodeproject.org/files/ENCFF180QHY/@@download/ENCFF180QHY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/705a81cf-94a5-4f36-94b7-b689a47dd1a6/ENCFF180QHY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF605WGE bam bam alignments ce10 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 50 /files/ENCFF180QHY/, /files/ENCFF987UMF/ 860642411 Kevin White, UChicago cd96810875fa7f148602535be744e325 https://www.encodeproject.org/files/ENCFF605WGE/@@download/ENCFF605WGE.bam released s3://encode-public/2016/10/05/506e0145-e8b0-4d3b-9409-7a71818be5e1/ENCFF605WGE.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF453GFW bam bam alignments ce10 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF782CXY/, /files/ENCFF987UMF/ 905656352 Kevin White, UChicago 99542c650124108ea09e4d1216ddb6bc https://www.encodeproject.org/files/ENCFF453GFW/@@download/ENCFF453GFW.bam released s3://encode-public/2016/10/05/ee41d56d-3db7-4546-968b-a6f41d8e6e95/ENCFF453GFW.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF344HNH bam bam alignments ce11 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 50 /files/ENCFF180QHY/, /files/ENCFF586MOL/ 861360182 Kevin White, UChicago 29a3e421d749644ef8079d6af51263f4 https://www.encodeproject.org/files/ENCFF344HNH/@@download/ENCFF344HNH.bam released s3://encode-public/2016/10/05/d9ff634d-2390-4b4b-ad42-29bc3cb4e71d/ENCFF344HNH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF719ZDK bam bam alignments ce11 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF782CXY/, /files/ENCFF586MOL/ 906398761 Kevin White, UChicago 4187557df317d536b7644bbba0386f31 https://www.encodeproject.org/files/ENCFF719ZDK/@@download/ENCFF719ZDK.bam released s3://encode-public/2016/10/05/6d5d8f6a-f04b-4c70-b47d-504c2c0a7f66/ENCFF719ZDK.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF229YTO bigWig bigWig signal of unique reads ce10 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF605WGE/, /files/ENCFF453GFW/ 9930975 Kevin White, UChicago 05923123a8b1923687873d8bd47bc4e6 https://www.encodeproject.org/files/ENCFF229YTO/@@download/ENCFF229YTO.bigWig released s3://encode-public/2016/10/06/0cd2379f-f767-40b5-b3db-0706567ba78c/ENCFF229YTO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF954LLL bigWig bigWig read-depth normalized signal ce10 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF605WGE/, /files/ENCFF453GFW/ 9910493 Kevin White, UChicago c7b35a6c5d4c9fa32113c22009b5672e https://www.encodeproject.org/files/ENCFF954LLL/@@download/ENCFF954LLL.bigWig released s3://encode-public/2016/10/06/324184a2-d831-4b10-a24e-9931921034be/ENCFF954LLL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF423ZJN bigWig bigWig signal of unique reads ce11 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF344HNH/, /files/ENCFF719ZDK/ 9930977 Kevin White, UChicago cba4cf694272767b5543500443123ba7 https://www.encodeproject.org/files/ENCFF423ZJN/@@download/ENCFF423ZJN.bigWig released s3://encode-public/2016/10/06/823a29d8-c1e0-4dcb-ac9f-3b3cb3449a8f/ENCFF423ZJN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF970AQS bigWig bigWig read-depth normalized signal ce11 ENCSR504CUV Control ChIP-seq /worm-donors/ENCDO736PVE/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175921/'], '@type': ['Target', 'Item'], 'name': 'T26A5.8-celegans', 'label': 'T26A5.8', '@id': '/targets/T26A5.8-celegans/', 'title': 'T26A5.8 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '413acb24-8a53-4c0a-a77f-f8943750c59e', 'status': 'released'} ce11 III 6450914 6482872 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF344HNH/, /files/ENCFF719ZDK/ 9910494 Kevin White, UChicago 874e1169dcfaa02b42498e1a86699ac9 https://www.encodeproject.org/files/ENCFF970AQS/@@download/ENCFF970AQS.bigWig released s3://encode-public/2016/10/06/c01834ca-cc96-4a9b-b77d-2372415f1b08/ENCFF970AQS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF201ZVH fastq fastq reads ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 single-ended 937872863 Xiang-Dong Fu, UCSD a472cb5410d23ca4a1a3b4c319104e7e SRA:SRR6214102 https://www.encodeproject.org/files/ENCFF201ZVH/@@download/ENCFF201ZVH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/13b207b7-124f-47f5-9e28-3a33fe3a8e46/ENCFF201ZVH.fastq.gz low read length ENCFF025UQF fastq fastq reads ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 single-ended 959826282 Xiang-Dong Fu, UCSD 58c463717d6419a4717ca82f74bd3349 SRA:SRR6214101 https://www.encodeproject.org/files/ENCFF025UQF/@@download/ENCFF025UQF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/3b833287-8a7a-442a-949c-101cbab9b403/ENCFF025UQF.fastq.gz low read length ENCFF519TJP bam bam unfiltered alignments hg19 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF201ZVH/, /files/ENCFF807MUK/ 1313099218 ENCODE Processing Pipeline d22aa60a5a900870cfe59dfcdb275f41 https://www.encodeproject.org/files/ENCFF519TJP/@@download/ENCFF519TJP.bam released s3://encode-public/2017/02/08/b22286bc-5abb-407e-a6a9-004c957b556f/ENCFF519TJP.bam ENCODE3 hg19 archived low read length ENCFF026JBI bam bam unfiltered alignments hg19 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF025UQF/ 1343899981 ENCODE Processing Pipeline ed9e3c3f6ea0255a3c892154d32c7903 https://www.encodeproject.org/files/ENCFF026JBI/@@download/ENCFF026JBI.bam released s3://encode-public/2017/02/08/5558dda4-a15d-43a0-a044-79e5ecf21f09/ENCFF026JBI.bam ENCODE3 hg19 archived low read length ENCFF705ZEH bam bam alignments hg19 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF201ZVH/, /files/ENCFF807MUK/ 972508084 ENCODE Processing Pipeline 1d94038ac342cbd55961d931bf2a9e4b https://www.encodeproject.org/files/ENCFF705ZEH/@@download/ENCFF705ZEH.bam released s3://encode-public/2017/02/08/f69691df-68c3-4680-b9fe-372f98106009/ENCFF705ZEH.bam ENCODE3 hg19 archived low read length ENCFF477SGV bam bam alignments hg19 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF025UQF/ 996456355 ENCODE Processing Pipeline 944a233d48bbca53ec2155a29105afe3 https://www.encodeproject.org/files/ENCFF477SGV/@@download/ENCFF477SGV.bam released s3://encode-public/2017/02/08/a536aaf2-9aa0-4a35-b75b-674494072821/ENCFF477SGV.bam ENCODE3 hg19 archived low read length ENCFF782IWR bam bam unfiltered alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF025UQF/ 1349141403 ENCODE Processing Pipeline 2134da9f8a3586abcdd6276ca7d069ce https://www.encodeproject.org/files/ENCFF782IWR/@@download/ENCFF782IWR.bam released s3://encode-public/2017/02/08/fcd692d2-8063-460c-9453-957ad83eb052/ENCFF782IWR.bam ENCODE3 GRCh38 archived low read length ENCFF852YOS bam bam unfiltered alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF201ZVH/, /files/ENCFF643CGH/ 1318165711 ENCODE Processing Pipeline 99cff413775c3af48345ad048d1b4879 https://www.encodeproject.org/files/ENCFF852YOS/@@download/ENCFF852YOS.bam released s3://encode-public/2017/02/08/ca208c53-5691-46d8-9732-1a0f1c55a485/ENCFF852YOS.bam ENCODE3 GRCh38 archived low read length ENCFF308PSW bam bam alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF025UQF/ 995563185 ENCODE Processing Pipeline 8fd849cf8385660aedd8b4896e540539 https://www.encodeproject.org/files/ENCFF308PSW/@@download/ENCFF308PSW.bam released s3://encode-public/2017/02/08/16e8dd76-d423-485d-bed3-9ce54ab80382/ENCFF308PSW.bam ENCODE3 GRCh38 archived low read length ENCFF198JCQ bam bam alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF201ZVH/, /files/ENCFF643CGH/ 971609985 ENCODE Processing Pipeline f7663920927531afc2bf74d05fe3f08f https://www.encodeproject.org/files/ENCFF198JCQ/@@download/ENCFF198JCQ.bam released s3://encode-public/2017/02/08/4067df28-6efd-4451-892b-6f6cce3327b2/ENCFF198JCQ.bam ENCODE3 GRCh38 archived low read length ENCFF607DFN bam bam alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF025UQF/, /files/ENCFF110MCL/ 1014038683 ENCODE Processing Pipeline 6a48fe3cebb7add5a5f0f0e733e0c603 https://www.encodeproject.org/files/ENCFF607DFN/@@download/ENCFF607DFN.bam released s3://encode-public/2020/10/27/43ce1091-f4e4-4df8-bde4-37bb5db5f280/ENCFF607DFN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF778OWZ bam bam unfiltered alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF201ZVH/, /files/ENCFF110MCL/ 1304950990 ENCODE Processing Pipeline 6757c5c626ebf26f75e55fd6acb3a76e https://www.encodeproject.org/files/ENCFF778OWZ/@@download/ENCFF778OWZ.bam released s3://encode-public/2020/10/27/41865693-a6b9-4d55-a978-76b2c6ea556b/ENCFF778OWZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF591RXP bam bam alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF201ZVH/, /files/ENCFF110MCL/ 989770903 ENCODE Processing Pipeline 6ad9ee27432d54850cfd6c61508f1454 https://www.encodeproject.org/files/ENCFF591RXP/@@download/ENCFF591RXP.bam released s3://encode-public/2020/10/27/e5308122-d52c-4e47-b9bf-1e18197f1680/ENCFF591RXP.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF759ZXD bam bam unfiltered alignments GRCh38 ENCSR966DOU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF025UQF/, /files/ENCFF110MCL/ 1335181873 ENCODE Processing Pipeline 713bc365bf0a212363588ed046be54e8 https://www.encodeproject.org/files/ENCFF759ZXD/@@download/ENCFF759ZXD.bam released s3://encode-public/2020/10/27/c9e172e8-b228-4195-8c1e-ff2477cbcd48/ENCFF759ZXD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF662WBM bam bam alignments ce11 ENCSR335QVI Control ChIP-seq /worm-donors/ENCDO908BUI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174341/'], '@type': ['Target', 'Item'], 'name': 'efl-3-celegans', 'label': 'efl-3', '@id': '/targets/efl-3-celegans/', 'title': 'efl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3dcab660-0116-431d-b423-6e96a28adc04', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF480AGA/, /files/ENCFF586MOL/ 1064136647 Kevin White, UChicago bb5f20bd1566bb9dfdcd5675ef4c154e https://www.encodeproject.org/files/ENCFF662WBM/@@download/ENCFF662WBM.bam released s3://encode-public/2018/09/17/dd8ea511-8310-4a9d-b526-1ab375a4829f/ENCFF662WBM.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF480AGA fastq fastq reads ENCSR335QVI Control ChIP-seq /worm-donors/ENCDO908BUI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174341/'], '@type': ['Target', 'Item'], 'name': 'efl-3-celegans', 'label': 'efl-3', '@id': '/targets/efl-3-celegans/', 'title': 'efl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3dcab660-0116-431d-b423-6e96a28adc04', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 825590337 Kevin White, UChicago 35bfbb0833c0c7993d888c399e34dec2 https://www.encodeproject.org/files/ENCFF480AGA/@@download/ENCFF480AGA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/a5b6d310-cf8a-4e0b-8af8-ff3771153356/ENCFF480AGA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF294GIV bigWig bigWig signal of unique reads ce11 ENCSR335QVI Control ChIP-seq /worm-donors/ENCDO908BUI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174341/'], '@type': ['Target', 'Item'], 'name': 'efl-3-celegans', 'label': 'efl-3', '@id': '/targets/efl-3-celegans/', 'title': 'efl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3dcab660-0116-431d-b423-6e96a28adc04', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF662WBM/ 10010226 Kevin White, UChicago 687cd590586e416d329ffa4d57ec1a5f https://www.encodeproject.org/files/ENCFF294GIV/@@download/ENCFF294GIV.bigWig released s3://encode-public/2018/09/18/b22bda33-9a0d-4842-90d6-fba9c9111f5b/ENCFF294GIV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF455YLL bigWig bigWig read-depth normalized signal ce11 ENCSR335QVI Control ChIP-seq /worm-donors/ENCDO908BUI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174341/'], '@type': ['Target', 'Item'], 'name': 'efl-3-celegans', 'label': 'efl-3', '@id': '/targets/efl-3-celegans/', 'title': 'efl-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '3dcab660-0116-431d-b423-6e96a28adc04', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF662WBM/ 10043715 Kevin White, UChicago 771fce21ec95e5b4abecb95770975708 https://www.encodeproject.org/files/ENCFF455YLL/@@download/ENCFF455YLL.bigWig released s3://encode-public/2018/09/18/3ac451e7-2a78-48fc-811f-9e3314067038/ENCFF455YLL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF884PXT fastq fastq reads ENCSR776XHE Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 single-ended 2558919086 Richard Myers, HAIB 0b45cfd263901472b703c53cf18cd13f SRA:SRR14103719 https://www.encodeproject.org/files/ENCFF884PXT/@@download/ENCFF884PXT.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/05/27/78653c91-acab-4069-8392-727335866d73/ENCFF884PXT.fastq.gz mild to moderate bottlenecking ENCFF683RDF bam bam unfiltered alignments GRCh38 ENCSR776XHE Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF884PXT/ 2595699884 ENCODE Processing Pipeline 88e8fcb0912c90eaab4decf7c32451cf https://www.encodeproject.org/files/ENCFF683RDF/@@download/ENCFF683RDF.bam released s3://encode-public/2020/08/12/d54fb0d8-b916-4092-bbb5-d0df99d7cf82/ENCFF683RDF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF980IWQ bam bam alignments GRCh38 ENCSR776XHE Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF884PXT/ 1448988530 ENCODE Processing Pipeline 52374c0c881bbe45a26318134536cfd6 https://www.encodeproject.org/files/ENCFF980IWQ/@@download/ENCFF980IWQ.bam released s3://encode-public/2020/08/12/3be96f05-f8a8-45f9-a1ad-4ff1eb71ca67/ENCFF980IWQ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF109FFA fastq fastq reads ENCSR343RCH Control ChIP-seq /fly-donors/ENCDO097IOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32114/'], '@type': ['Target', 'Item'], 'name': 'Met-dmelanogaster', 'label': 'Met', '@id': '/targets/Met-dmelanogaster/', 'title': 'Met (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d12ed72-a838-4e95-b15e-539d6a28e7d7', 'status': 'released'} dm3 X 11479381 11590337 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 559393943 Kevin White, UChicago 0946d6f1769ace84fdd5345f9b46f794 https://www.encodeproject.org/files/ENCFF109FFA/@@download/ENCFF109FFA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/a3e9b294-b24a-4162-924b-364065fa74bc/ENCFF109FFA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF463ZCR bam bam alignments dm3 ENCSR343RCH Control ChIP-seq /fly-donors/ENCDO097IOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32114/'], '@type': ['Target', 'Item'], 'name': 'Met-dmelanogaster', 'label': 'Met', '@id': '/targets/Met-dmelanogaster/', 'title': 'Met (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d12ed72-a838-4e95-b15e-539d6a28e7d7', 'status': 'released'} dm3 X 11479381 11590337 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF109FFA/ 823198748 Kevin White, UChicago 2063538be93e236edb6e0f59e6e29597 https://www.encodeproject.org/files/ENCFF463ZCR/@@download/ENCFF463ZCR.bam released s3://encode-public/2015/08/03/58b147c8-1a43-48a6-89a9-a81d0689e2aa/ENCFF463ZCR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF163PIC bigWig bigWig signal of unique reads dm3 ENCSR343RCH Control ChIP-seq /fly-donors/ENCDO097IOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32114/'], '@type': ['Target', 'Item'], 'name': 'Met-dmelanogaster', 'label': 'Met', '@id': '/targets/Met-dmelanogaster/', 'title': 'Met (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d12ed72-a838-4e95-b15e-539d6a28e7d7', 'status': 'released'} dm3 X 11479381 11590337 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF463ZCR/ 15151174 Kevin White, UChicago 497cce85d1b55fd21f96299b5e5bf1bb https://www.encodeproject.org/files/ENCFF163PIC/@@download/ENCFF163PIC.bigWig released s3://encode-public/2015/10/06/18734fe3-8690-4184-a0f4-b8d60b8e2602/ENCFF163PIC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF994GLS bigWig bigWig read-depth normalized signal dm3 ENCSR343RCH Control ChIP-seq /fly-donors/ENCDO097IOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32114/'], '@type': ['Target', 'Item'], 'name': 'Met-dmelanogaster', 'label': 'Met', '@id': '/targets/Met-dmelanogaster/', 'title': 'Met (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d12ed72-a838-4e95-b15e-539d6a28e7d7', 'status': 'released'} dm3 X 11479381 11590337 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF463ZCR/ 15156045 Kevin White, UChicago 70fd15e79a329e80ca927962c2d6555d https://www.encodeproject.org/files/ENCFF994GLS/@@download/ENCFF994GLS.bigWig released s3://encode-public/2015/10/06/6716fa36-3748-4af9-954f-d0817aa08631/ENCFF994GLS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF679LYI bam bam alignments dm6 ENCSR343RCH Control ChIP-seq /fly-donors/ENCDO097IOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32114/'], '@type': ['Target', 'Item'], 'name': 'Met-dmelanogaster', 'label': 'Met', '@id': '/targets/Met-dmelanogaster/', 'title': 'Met (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d12ed72-a838-4e95-b15e-539d6a28e7d7', 'status': 'released'} dm3 X 11479381 11590337 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF109FFA/ 820436345 Kevin White, UChicago 3b785b933d47bd87fd611d08d7a0100c https://www.encodeproject.org/files/ENCFF679LYI/@@download/ENCFF679LYI.bam released s3://encode-public/2016/04/22/bdd8d517-ce16-41d4-b4d8-628e9becfd57/ENCFF679LYI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF712JJR bigWig bigWig signal of unique reads dm6 ENCSR343RCH Control ChIP-seq /fly-donors/ENCDO097IOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32114/'], '@type': ['Target', 'Item'], 'name': 'Met-dmelanogaster', 'label': 'Met', '@id': '/targets/Met-dmelanogaster/', 'title': 'Met (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d12ed72-a838-4e95-b15e-539d6a28e7d7', 'status': 'released'} dm3 X 11479381 11590337 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679LYI/ 17246987 Kevin White, UChicago 3b48f4ed591be949c8c00ae511309fdd https://www.encodeproject.org/files/ENCFF712JJR/@@download/ENCFF712JJR.bigWig released s3://encode-public/2016/06/20/f3f63f5f-a7cd-4f89-8d58-9ec130865cf3/ENCFF712JJR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF646KMN bigWig bigWig read-depth normalized signal dm6 ENCSR343RCH Control ChIP-seq /fly-donors/ENCDO097IOA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32114/'], '@type': ['Target', 'Item'], 'name': 'Met-dmelanogaster', 'label': 'Met', '@id': '/targets/Met-dmelanogaster/', 'title': 'Met (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d12ed72-a838-4e95-b15e-539d6a28e7d7', 'status': 'released'} dm3 X 11479381 11590337 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679LYI/ 17248574 Kevin White, UChicago eaf573d81877e7a2ff3c37010b41bcd9 https://www.encodeproject.org/files/ENCFF646KMN/@@download/ENCFF646KMN.bigWig released s3://encode-public/2016/06/20/fb009239-91ba-4d33-a980-4761b5a586c3/ENCFF646KMN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF028TFQ fastq fastq reads ENCSR378DHU Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1714404141 Kevin White, UChicago ea574ed2392c4ea67efe5859452f8bb2 https://www.encodeproject.org/files/ENCFF028TFQ/@@download/ENCFF028TFQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/23/b96cee37-41e0-4fce-adf5-632d8cd1e579/ENCFF028TFQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF857TNV bam bam alignments dm3 ENCSR378DHU Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF028TFQ/ 2090088257 Kevin White, UChicago 68f7054c20a33b2e7d835c247d4cd53a https://www.encodeproject.org/files/ENCFF857TNV/@@download/ENCFF857TNV.bam released s3://encode-public/2017/06/18/d2b38358-0164-4654-81c0-57ffc555f78b/ENCFF857TNV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF272DIE bam bam alignments dm6 ENCSR378DHU Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF028TFQ/ 2080586127 Kevin White, UChicago 6d29e2207d0a41ad41e59b986e8d5894 https://www.encodeproject.org/files/ENCFF272DIE/@@download/ENCFF272DIE.bam released s3://encode-public/2017/06/28/f99f94a2-e0f9-4adb-8f21-bc509c56fbd5/ENCFF272DIE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF087YFX bigWig bigWig signal of unique reads dm3 ENCSR378DHU Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF857TNV/ 16266468 Kevin White, UChicago c30ab5810de6cc6be6a0feb77bca7d36 https://www.encodeproject.org/files/ENCFF087YFX/@@download/ENCFF087YFX.bigWig released s3://encode-public/2017/06/29/4ddd689e-fde0-496f-bf30-21f52f89c299/ENCFF087YFX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF188JJU bigWig bigWig read-depth normalized signal dm3 ENCSR378DHU Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF857TNV/ 16328111 Kevin White, UChicago 261e457362cc5806c80b503fa1c3613a https://www.encodeproject.org/files/ENCFF188JJU/@@download/ENCFF188JJU.bigWig released s3://encode-public/2017/06/29/7f662790-540f-4b1a-a1ca-2603e0e06e5b/ENCFF188JJU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF201ZYC bigWig bigWig read-depth normalized signal dm6 ENCSR378DHU Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF272DIE/ 18005211 Kevin White, UChicago 5cd6035ca4eb505261ee70c4daebbf2a https://www.encodeproject.org/files/ENCFF201ZYC/@@download/ENCFF201ZYC.bigWig released s3://encode-public/2017/06/30/9b946ae0-7fab-4362-b74a-5d3a72bf5cac/ENCFF201ZYC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF378WKB bigWig bigWig signal of unique reads dm6 ENCSR378DHU Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF272DIE/ 17942404 Kevin White, UChicago 0e6c5ee1becb736f3cf584059965e091 https://www.encodeproject.org/files/ENCFF378WKB/@@download/ENCFF378WKB.bigWig released s3://encode-public/2017/06/30/debeb525-a77c-4da9-a12d-76c25a6cfdb3/ENCFF378WKB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF768HNI bam bam unfiltered alignments GRCh38 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF399TYX/, /files/ENCFF960KHR/, /files/ENCFF455PUA/, /files/ENCFF706YBP/, /files/ENCFF381PRV/, /files/ENCFF901IKR/, /files/ENCFF002MFG/, /files/ENCFF420XCA/, /files/ENCFF149SVR/, /files/ENCFF781NAI/, /files/ENCFF110MCL/, /files/ENCFF782IVM/, /files/ENCFF679EXB/ 3880950524 ENCODE Processing Pipeline fdf938041e690de96f35a627519dec35 https://www.encodeproject.org/files/ENCFF768HNI/@@download/ENCFF768HNI.bam released s3://encode-public/2020/09/19/41227714-0c86-4938-8c3a-be1f51034735/ENCFF768HNI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF676NVD fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1959912564 Bradley Bernstein, Broad c294ef0c41a660003a50c32ca1d21dbe SRA:SRR10838295 https://www.encodeproject.org/files/ENCFF676NVD/@@download/ENCFF676NVD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/d40f3dac-2e55-4a4f-89db-2b779b3397ca/ENCFF676NVD.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF987UPV fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1910899773 Bradley Bernstein, Broad 1aa4a9a2879fc5c7b148564d4c8b5078 SRA:SRR10838296 https://www.encodeproject.org/files/ENCFF987UPV/@@download/ENCFF987UPV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/32fc85cf-48b3-4b51-8d44-4e67b565288b/ENCFF987UPV.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF395SFG fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 889506182 Bradley Bernstein, Broad 3fc32d6c9bc6cba4ea8df84727785d2f SRA:SRR10838297 https://www.encodeproject.org/files/ENCFF395SFG/@@download/ENCFF395SFG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/d360c0c8-fc68-4b99-8d8a-4bd40b74d9b5/ENCFF395SFG.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF665KVL fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 895697625 Bradley Bernstein, Broad 3f11fad739d28ab20b59cfd131dbd62a SRA:SRR10838298 https://www.encodeproject.org/files/ENCFF665KVL/@@download/ENCFF665KVL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/f3badfaa-0aea-412e-b70c-a01e76a5346b/ENCFF665KVL.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF573MUC bam bam unfiltered alignments hg19 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF676NVD/, /files/ENCFF665KVL/, /files/ENCFF807MUK/, /files/ENCFF987UPV/, /files/ENCFF395SFG/ 5819397450 ENCODE Processing Pipeline 78bd80b26e41cd6895c5ef765191ca53 https://www.encodeproject.org/files/ENCFF573MUC/@@download/ENCFF573MUC.bam released s3://encode-public/2019/02/07/9bc96c3e-7b84-4e59-8dd7-6ab7e1df8c13/ENCFF573MUC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, inconsistent platforms ENCFF755IZS bam bam unfiltered alignments GRCh38 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF676NVD/, /files/ENCFF665KVL/, /files/ENCFF643CGH/, /files/ENCFF987UPV/, /files/ENCFF395SFG/ 5835385349 ENCODE Processing Pipeline c03114ec878b5276b66788bce3aaf7a2 https://www.encodeproject.org/files/ENCFF755IZS/@@download/ENCFF755IZS.bam released s3://encode-public/2019/02/07/a46681be-6d46-415f-a91b-71df5e74d957/ENCFF755IZS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, inconsistent platforms ENCFF439BWQ bam bam alignments hg19 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF676NVD/, /files/ENCFF665KVL/, /files/ENCFF807MUK/, /files/ENCFF987UPV/, /files/ENCFF395SFG/ 4800317809 ENCODE Processing Pipeline 5e0c39dbd3421b8a43fbbf2caae31601 https://www.encodeproject.org/files/ENCFF439BWQ/@@download/ENCFF439BWQ.bam released s3://encode-public/2019/02/07/065bbc82-b53b-4462-b7fe-27f3743f100e/ENCFF439BWQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, inconsistent platforms ENCFF078AVO bam bam alignments GRCh38 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF676NVD/, /files/ENCFF665KVL/, /files/ENCFF643CGH/, /files/ENCFF987UPV/, /files/ENCFF395SFG/ 4806286508 ENCODE Processing Pipeline 2d073e1411b60797410d80f3bb92ed55 https://www.encodeproject.org/files/ENCFF078AVO/@@download/ENCFF078AVO.bam released s3://encode-public/2019/02/07/e24454a2-3c67-4090-9d9e-3a3c426a9189/ENCFF078AVO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, inconsistent platforms ENCFF679EXB fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_2 76 single-ended 283263195 Bradley Bernstein, Broad daa7efaeb29a93ab65d5cd40f1a36b1b SRA:SRR10838299 https://www.encodeproject.org/files/ENCFF679EXB/@@download/ENCFF679EXB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/224b76ca-84da-40fb-97f1-f7613d99eb60/ENCFF679EXB.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF455PUA fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_2 76 single-ended 287824576 Bradley Bernstein, Broad 866b5bc15a1d3c29c92fd41631e77e44 SRA:SRR10838300 https://www.encodeproject.org/files/ENCFF455PUA/@@download/ENCFF455PUA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/881b4c39-97c7-4af2-9c18-5fa2c21b2fcd/ENCFF455PUA.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF149SVR fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_2 76 single-ended 283047336 Bradley Bernstein, Broad bffdb806fdfc620dc46f47ef162e34c7 SRA:SRR10838301 https://www.encodeproject.org/files/ENCFF149SVR/@@download/ENCFF149SVR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/2f61af93-31aa-4722-b6d9-74ab950c0d57/ENCFF149SVR.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF420XCA fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_2 76 single-ended 285498420 Bradley Bernstein, Broad 0c773635f200c63a5d33b31fdc439316 SRA:SRR10838302 https://www.encodeproject.org/files/ENCFF420XCA/@@download/ENCFF420XCA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/9fcba2bc-69b8-4ff6-bad0-a6e0d196300b/ENCFF420XCA.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF381PRV fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 single-ended 345188965 Bradley Bernstein, Broad 4d2b78dcbdd2d4c9be5c957cfedfce35 SRA:SRR10838305 https://www.encodeproject.org/files/ENCFF381PRV/@@download/ENCFF381PRV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/b982a90d-2d96-4aab-a28c-8e2f94dcb777/ENCFF381PRV.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF706YBP fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 single-ended 354190047 Bradley Bernstein, Broad ab295c0200f10e224a5bba0dd83ad36c SRA:SRR10838306 https://www.encodeproject.org/files/ENCFF706YBP/@@download/ENCFF706YBP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/d543e3d2-48d4-495a-96af-d5056ced76eb/ENCFF706YBP.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF901IKR fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 single-ended 346310006 Bradley Bernstein, Broad 33d0ba94e1124294110adca6f944c9f4 SRA:SRR10838307 https://www.encodeproject.org/files/ENCFF901IKR/@@download/ENCFF901IKR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/dbf0c185-204a-4629-801a-dd1121349532/ENCFF901IKR.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF960KHR fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1 76 single-ended 349033541 Bradley Bernstein, Broad 71a5aa00b2db89a547e198f0d34594ce SRA:SRR10838308 https://www.encodeproject.org/files/ENCFF960KHR/@@download/ENCFF960KHR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/5a93d572-6b08-45d8-acc4-7dc3827e518d/ENCFF960KHR.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF894DLO bam bam unfiltered alignments hg19 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF781NAI/, /files/ENCFF399TYX/, /files/ENCFF381PRV/, /files/ENCFF960KHR/, /files/ENCFF807MUK/, /files/ENCFF149SVR/, /files/ENCFF002MFG/, /files/ENCFF782IVM/, /files/ENCFF679EXB/, /files/ENCFF706YBP/, /files/ENCFF455PUA/, /files/ENCFF901IKR/, /files/ENCFF420XCA/ 3892571845 ENCODE Processing Pipeline dcc64b8c60d4f179345a3c777e9a9f35 https://www.encodeproject.org/files/ENCFF894DLO/@@download/ENCFF894DLO.bam released s3://encode-public/2019/08/30/1b1ff2e4-375a-4436-9df7-1ae5c9bc1b4b/ENCFF894DLO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, inconsistent platforms ENCFF640LOU bam bam unfiltered alignments GRCh38 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF781NAI/, /files/ENCFF643CGH/, /files/ENCFF399TYX/, /files/ENCFF381PRV/, /files/ENCFF960KHR/, /files/ENCFF149SVR/, /files/ENCFF002MFG/, /files/ENCFF782IVM/, /files/ENCFF679EXB/, /files/ENCFF706YBP/, /files/ENCFF455PUA/, /files/ENCFF901IKR/, /files/ENCFF420XCA/ 3905434527 ENCODE Processing Pipeline 6b08a6d75acaa1aa3ed054b0d10cb6ea https://www.encodeproject.org/files/ENCFF640LOU/@@download/ENCFF640LOU.bam released s3://encode-public/2019/08/30/1f1e8f93-fe65-464c-b09a-27f27dbbb176/ENCFF640LOU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, inconsistent platforms ENCFF435JNA bam bam alignments GRCh38 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF781NAI/, /files/ENCFF643CGH/, /files/ENCFF399TYX/, /files/ENCFF381PRV/, /files/ENCFF960KHR/, /files/ENCFF149SVR/, /files/ENCFF002MFG/, /files/ENCFF782IVM/, /files/ENCFF679EXB/, /files/ENCFF706YBP/, /files/ENCFF455PUA/, /files/ENCFF901IKR/, /files/ENCFF420XCA/ 2879299749 ENCODE Processing Pipeline d47fb38356e7d04adbada70dd1a75365 https://www.encodeproject.org/files/ENCFF435JNA/@@download/ENCFF435JNA.bam released s3://encode-public/2019/08/30/e2eb2986-b91b-47dd-a68a-f0841f92abf7/ENCFF435JNA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, inconsistent platforms ENCFF456EMR bam bam alignments hg19 ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF781NAI/, /files/ENCFF399TYX/, /files/ENCFF381PRV/, /files/ENCFF960KHR/, /files/ENCFF807MUK/, /files/ENCFF149SVR/, /files/ENCFF002MFG/, /files/ENCFF782IVM/, /files/ENCFF679EXB/, /files/ENCFF706YBP/, /files/ENCFF455PUA/, /files/ENCFF901IKR/, /files/ENCFF420XCA/ 2875984407 ENCODE Processing Pipeline 9dc9cb86b71681b210d6e29569ec09ae https://www.encodeproject.org/files/ENCFF456EMR/@@download/ENCFF456EMR.bam released s3://encode-public/2019/08/30/b71aefa4-ad3b-4e7a-a7af-79b6f60e0581/ENCFF456EMR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, inconsistent platforms ENCFF002MFG fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_2 76 single-ended 373370071 Bradley Bernstein, Broad 7d6c5c4ed01eea5187b51336f457ffc3 SRA:SRR10838303 https://www.encodeproject.org/files/ENCFF002MFG/@@download/ENCFF002MFG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/0d9e60a9-abf1-4800-82cc-819e41cc898a/ENCFF002MFG.fastq.gz mild to moderate bottlenecking, inconsistent platforms ENCFF399TYX fastq fastq reads ENCSR711URW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 2 2_2 76 single-ended 380273253 Bradley Bernstein, Broad bc14e3ab03316984d7900a4c8465446e SRA:SRR10838304 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/files/ENCFF329PLP/ 1261293645 ENCODE Processing Pipeline da0e439ddf7a1071c4324739206cc3a7 https://www.encodeproject.org/files/ENCFF080JZB/@@download/ENCFF080JZB.bam released s3://encode-public/2016/05/20/175d2149-574e-47c3-847c-c6630fdf90b0/ENCFF080JZB.bam ENCODE3 mm10 archived ENCFF132KBH bam bam alignments mm10 ENCSR281FZS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF329PLP/ 967295160 ENCODE Processing Pipeline 558e9487eb6e07894129021ba52a5818 https://www.encodeproject.org/files/ENCFF132KBH/@@download/ENCFF132KBH.bam released s3://encode-public/2016/05/20/01735ac1-8148-496f-83d9-c128267ed68f/ENCFF132KBH.bam ENCODE3 mm10 archived ENCFF168OCU bam bam unfiltered alignments mm10 ENCSR281FZS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF329PLP/ 1245516601 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['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 243988169 Michael Snyder, Stanford 696ebde06a32a97c08d429e2c4197b45 https://www.encodeproject.org/files/ENCFF412DTS/@@download/ENCFF412DTS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/c0dca7cb-8096-48ad-8338-2a44ff294e58/ENCFF412DTS.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF403PWD fastq fastq reads ENCSR653UXP Control ChIP-seq /worm-donors/ENCDO646EOP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 195812977 Michael Snyder, Stanford 550619c9a9fcbb13993d8973a1261ecc https://www.encodeproject.org/files/ENCFF403PWD/@@download/ENCFF403PWD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/1fca6752-86cd-4c20-85f4-5a1bdf51f0bc/ENCFF403PWD.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF711NTC bam bam alignments ce10 ENCSR653UXP Control ChIP-seq /worm-donors/ENCDO646EOP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF403PWD/, /files/ENCFF412DTS/, /files/ENCFF987UMF/ 571310211 Kevin White, UChicago 5f08534b7a6a0ca46eddc46269c33ee3 https://www.encodeproject.org/files/ENCFF711NTC/@@download/ENCFF711NTC.bam released s3://encode-public/2017/04/27/5b813848-379b-446e-ad14-3bd5f24039db/ENCFF711NTC.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF961SEQ bam bam alignments ce11 ENCSR653UXP Control ChIP-seq /worm-donors/ENCDO646EOP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF403PWD/, /files/ENCFF412DTS/, /files/ENCFF586MOL/ 571950535 Kevin White, UChicago 8848e95187971d3eba3b2897919a1bfd https://www.encodeproject.org/files/ENCFF961SEQ/@@download/ENCFF961SEQ.bam released s3://encode-public/2017/04/27/9a2005a2-8f79-4f89-aa7d-5f284d619ba0/ENCFF961SEQ.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF347EYC bigWig bigWig signal of unique reads ce10 ENCSR653UXP Control ChIP-seq /worm-donors/ENCDO646EOP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF711NTC/ 10007150 Kevin White, UChicago dd4150d4c532577bc9e27b93b40d83f0 https://www.encodeproject.org/files/ENCFF347EYC/@@download/ENCFF347EYC.bigWig released s3://encode-public/2017/04/29/232a061d-25f0-4fb4-b386-f077aaac8507/ENCFF347EYC.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF728AON bigWig bigWig read-depth normalized signal ce10 ENCSR653UXP Control ChIP-seq /worm-donors/ENCDO646EOP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF711NTC/ 10045453 Kevin White, UChicago a5ba76f5ece8a41bbda5cd789dbbb686 https://www.encodeproject.org/files/ENCFF728AON/@@download/ENCFF728AON.bigWig released s3://encode-public/2017/04/29/5b83495b-6855-400e-af04-14972e1da964/ENCFF728AON.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF058SYT bigWig bigWig read-depth normalized signal ce11 ENCSR653UXP Control ChIP-seq /worm-donors/ENCDO646EOP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF961SEQ/ 10032091 Kevin White, UChicago ff7a20812f628356a785c4ac456deb0a https://www.encodeproject.org/files/ENCFF058SYT/@@download/ENCFF058SYT.bigWig released s3://encode-public/2017/04/29/481ed39b-2396-49bd-8df0-55cc6102caf9/ENCFF058SYT.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF911LHQ bigWig bigWig signal of unique reads ce11 ENCSR653UXP Control ChIP-seq /worm-donors/ENCDO646EOP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2018-01-19 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF961SEQ/ 9992485 Kevin White, UChicago 06f3694ac1ddfc4725953eeb296a93c0 https://www.encodeproject.org/files/ENCFF911LHQ/@@download/ENCFF911LHQ.bigWig released s3://encode-public/2017/04/29/3e736c75-bab7-42c9-a256-b5def24c3fc8/ENCFF911LHQ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF314WCC fastq fastq reads ENCSR431KAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1221483016 Richard Myers, HAIB 1019189b2fa48b49f28f6277082279a8 SRA:SRR5111568 https://www.encodeproject.org/files/ENCFF314WCC/@@download/ENCFF314WCC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/42d764be-3b33-4307-a1a1-19268c02d24d/ENCFF314WCC.fastq.gz ENCFF156HWT bam bam unfiltered alignments mm10 ENCSR431KAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF314WCC/ 1339226632 ENCODE Processing Pipeline 8acc4b5e0a596519e2d98704718eabc3 https://www.encodeproject.org/files/ENCFF156HWT/@@download/ENCFF156HWT.bam released s3://encode-public/2016/05/20/8d9f2ac8-1f57-4e39-90e3-43cffa9bb7f6/ENCFF156HWT.bam ENCODE3 mm10 archived ENCFF554RMZ bam bam alignments mm10 ENCSR431KAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF314WCC/ 1005392706 ENCODE Processing Pipeline 1c111635f2d1f09b462ad671afb02c14 https://www.encodeproject.org/files/ENCFF554RMZ/@@download/ENCFF554RMZ.bam released s3://encode-public/2016/05/20/c3444d64-6bc9-48e8-a241-e51e70a56278/ENCFF554RMZ.bam ENCODE3 mm10 archived ENCFF916DUZ bam bam unfiltered alignments mm10 ENCSR431KAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF314WCC/ 1324421951 ENCODE Processing Pipeline 5894a428efceadc0e1dd6821fc225f30 https://www.encodeproject.org/files/ENCFF916DUZ/@@download/ENCFF916DUZ.bam released s3://encode-public/2020/11/06/aa8d7e13-7d31-4843-97e4-38cdcde09de2/ENCFF916DUZ.bam ENCODE4 v1.6.1 mm10 released ENCFF298FQU bam bam alignments mm10 ENCSR431KAV Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF314WCC/ 1026932936 ENCODE Processing Pipeline f49e7557105e843cf767dbe3355b1e00 https://www.encodeproject.org/files/ENCFF298FQU/@@download/ENCFF298FQU.bam released s3://encode-public/2020/11/06/93711ce4-0e4b-4bc4-a777-9fb57a1966c9/ENCFF298FQU.bam ENCODE4 v1.6.1 mm10 released ENCFF764CBH fastq fastq reads ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2729770164 Bing Ren, UCSD f6876a28f4deafcefbea2e9334c06c0f SRA:SRR3651649 https://www.encodeproject.org/files/ENCFF764CBH/@@download/ENCFF764CBH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/e5309800-b3f1-424b-b240-989174b6103d/ENCFF764CBH.fastq.gz inconsistent platforms ENCFF272FYH fastq fastq reads ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 317201282 Bing Ren, UCSD a39fae52284a368871e9ce61aa850e16 SRA:SRR3651652 https://www.encodeproject.org/files/ENCFF272FYH/@@download/ENCFF272FYH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/38c45920-2d70-479e-bfce-043fdb567fc9/ENCFF272FYH.fastq.gz inconsistent platforms ENCFF880ZJK fastq fastq reads ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2169338183 Bing Ren, UCSD 0669c1ea755d051bc6c030f22be52e12 SRA:SRR3651653 https://www.encodeproject.org/files/ENCFF880ZJK/@@download/ENCFF880ZJK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/47626cec-a9df-4d65-b85e-08695f29e469/ENCFF880ZJK.fastq.gz inconsistent platforms ENCFF711NEU bam bam alignments mm10-minimal ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF880ZJK/, /files/ENCFF806TVZ/, /files/ENCFF272FYH/ 2095882241 ENCODE Processing Pipeline eae1650c38f477fc45606075ff3b3b4e https://www.encodeproject.org/files/ENCFF711NEU/@@download/ENCFF711NEU.bam archived s3://encode-public/2015/10/31/1ec50c3f-0406-48f5-871f-2feb758228d3/ENCFF711NEU.bam inconsistent platforms ENCFF236JLN bam bam alignments mm10-minimal ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF764CBH/ 2232650507 ENCODE Processing Pipeline 6bff12c79bd4970bce548588a99e8991 https://www.encodeproject.org/files/ENCFF236JLN/@@download/ENCFF236JLN.bam archived s3://encode-public/2015/10/31/00f9746d-ccf9-4612-8098-44c87474ed11/ENCFF236JLN.bam inconsistent platforms ENCFF410JAO fastq fastq reads ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 487045535 Bing Ren, UCSD 612df9967d8d1cc81b2b1aad016e3cd9 SRA:SRR3651654 https://www.encodeproject.org/files/ENCFF410JAO/@@download/ENCFF410JAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/da0831ee-4158-427e-99ee-ce26b4b784b8/ENCFF410JAO.fastq.gz inconsistent platforms ENCFF766DAD fastq fastq reads ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 875226560 Bing Ren, UCSD fdce7c02f82ab66f8c95b3d49f27179f SRA:SRR3651650 https://www.encodeproject.org/files/ENCFF766DAD/@@download/ENCFF766DAD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/49725d61-e44b-4f40-ba3d-8acffeef6fad/ENCFF766DAD.fastq.gz inconsistent platforms ENCFF222ZUV fastq fastq reads ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 261066483 Bing Ren, UCSD c182a5d1ef7208e000439804ac400930 SRA:SRR3651651 https://www.encodeproject.org/files/ENCFF222ZUV/@@download/ENCFF222ZUV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/5ae1cf4c-78bd-4d22-893d-833a7b475417/ENCFF222ZUV.fastq.gz inconsistent platforms ENCFF150TEC bam bam unfiltered alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF880ZJK/, /files/ENCFF018NEO/, /files/ENCFF410JAO/, /files/ENCFF272FYH/ 3785385371 ENCODE Processing Pipeline 1ca9486fd694a712380a966588c0eb9d https://www.encodeproject.org/files/ENCFF150TEC/@@download/ENCFF150TEC.bam released s3://encode-public/2016/07/18/a850f4fd-0e6f-4c83-87c6-f3b89d11946c/ENCFF150TEC.bam ENCODE3 mm10 archived inconsistent platforms ENCFF902WWW bam bam unfiltered alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF766DAD/, /files/ENCFF222ZUV/, /files/ENCFF764CBH/ 4972009667 ENCODE Processing Pipeline e605d68a7035d4acc2f48e87fc58a9a7 https://www.encodeproject.org/files/ENCFF902WWW/@@download/ENCFF902WWW.bam released s3://encode-public/2016/07/18/9bd84116-fcc4-4f0d-9d4d-5edf57b5fbab/ENCFF902WWW.bam ENCODE3 mm10 archived inconsistent platforms ENCFF125FAE bam bam alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF880ZJK/, /files/ENCFF018NEO/, /files/ENCFF410JAO/, /files/ENCFF272FYH/ 2609734979 ENCODE Processing Pipeline 5084e3d7885e8c8128f8b9ca99fe278a https://www.encodeproject.org/files/ENCFF125FAE/@@download/ENCFF125FAE.bam released s3://encode-public/2016/07/18/710f1527-53e9-45a1-9d13-5890a954d2da/ENCFF125FAE.bam ENCODE3 mm10 archived inconsistent platforms ENCFF580YCN bam bam alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF766DAD/, /files/ENCFF222ZUV/, /files/ENCFF764CBH/ 3375406725 ENCODE Processing Pipeline 0e55571e78f30a4e8b7f8d3e0fc679e8 https://www.encodeproject.org/files/ENCFF580YCN/@@download/ENCFF580YCN.bam released s3://encode-public/2016/07/18/cf34207d-4465-4e68-b931-ebbe15e42fa5/ENCFF580YCN.bam ENCODE3 mm10 archived inconsistent platforms ENCFF310URB bam bam unfiltered alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF410JAO/, /files/ENCFF309GLL/, /files/ENCFF272FYH/, /files/ENCFF880ZJK/ 3696587947 ENCODE Processing Pipeline 39d75832819abaaf66f32b5f42933922 https://www.encodeproject.org/files/ENCFF310URB/@@download/ENCFF310URB.bam released s3://encode-public/2020/10/08/6641c314-474f-48cd-8bf6-fbcf44d6328e/ENCFF310URB.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF944XRA bam bam alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF410JAO/, /files/ENCFF309GLL/, /files/ENCFF272FYH/, /files/ENCFF880ZJK/ 2691661308 ENCODE Processing Pipeline 2f72fcf9c5c9586fc23f96abf00f854d https://www.encodeproject.org/files/ENCFF944XRA/@@download/ENCFF944XRA.bam released s3://encode-public/2020/10/08/ac21baf0-ece5-4088-a022-6f7a9db011f9/ENCFF944XRA.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF438JNH bam bam unfiltered alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF222ZUV/, /files/ENCFF309GLL/, /files/ENCFF764CBH/, /files/ENCFF766DAD/ 4833768933 ENCODE Processing Pipeline a93b752b88beb0ee197e8c7d218d99a9 https://www.encodeproject.org/files/ENCFF438JNH/@@download/ENCFF438JNH.bam released s3://encode-public/2020/10/08/194cf2b0-2000-412f-82cd-524dcc1f3b64/ENCFF438JNH.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF061IIK bam bam alignments mm10 ENCSR240XQT Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF222ZUV/, /files/ENCFF309GLL/, /files/ENCFF764CBH/, /files/ENCFF766DAD/ 3458337761 ENCODE Processing Pipeline 5346a741cc79919c44a7e2ec3365a85d https://www.encodeproject.org/files/ENCFF061IIK/@@download/ENCFF061IIK.bam released s3://encode-public/2020/10/08/bdc4ffd0-c7b5-4420-a270-8756794ac675/ENCFF061IIK.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF328GIO fastq fastq reads ENCSR431TEW Control ChIP-seq /fly-donors/ENCDO965EUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41396/'], '@type': ['Target', 'Item'], 'name': 'CG6813-dmelanogaster', 'label': 'CG6813', '@id': '/targets/CG6813-dmelanogaster/', 'title': 'CG6813 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e700783c-5efe-40d6-9164-4ba016289475', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 497340265 Kevin White, UChicago f592e48b410afdd8a4003bc7b2bbbbe3 https://www.encodeproject.org/files/ENCFF328GIO/@@download/ENCFF328GIO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/7d2e6295-1d94-478c-8784-b921b7c062a4/ENCFF328GIO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF350AFG bam bam alignments dm3 ENCSR431TEW Control ChIP-seq /fly-donors/ENCDO965EUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41396/'], '@type': ['Target', 'Item'], 'name': 'CG6813-dmelanogaster', 'label': 'CG6813', '@id': '/targets/CG6813-dmelanogaster/', 'title': 'CG6813 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e700783c-5efe-40d6-9164-4ba016289475', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF328GIO/ 670126279 Kevin White, UChicago 68595a7e79a5fcf2f326c9fc473b51c7 https://www.encodeproject.org/files/ENCFF350AFG/@@download/ENCFF350AFG.bam released s3://encode-public/2017/09/12/baec1bdf-d27a-4096-a3d6-8d8527c133cd/ENCFF350AFG.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF301FCM bam bam alignments dm6 ENCSR431TEW Control ChIP-seq /fly-donors/ENCDO965EUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41396/'], '@type': ['Target', 'Item'], 'name': 'CG6813-dmelanogaster', 'label': 'CG6813', '@id': '/targets/CG6813-dmelanogaster/', 'title': 'CG6813 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e700783c-5efe-40d6-9164-4ba016289475', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF328GIO/ 658167045 Kevin White, UChicago e87d08c5da0f87c129b9448bfeed7c60 https://www.encodeproject.org/files/ENCFF301FCM/@@download/ENCFF301FCM.bam released s3://encode-public/2017/09/13/58d71e02-cdc3-4347-84ee-55d4b7113374/ENCFF301FCM.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF784KMB bigWig bigWig signal of unique reads dm3 ENCSR431TEW Control ChIP-seq /fly-donors/ENCDO965EUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41396/'], '@type': ['Target', 'Item'], 'name': 'CG6813-dmelanogaster', 'label': 'CG6813', '@id': '/targets/CG6813-dmelanogaster/', 'title': 'CG6813 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e700783c-5efe-40d6-9164-4ba016289475', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF350AFG/ 15269305 Kevin White, UChicago 369cd2fd0d46a8be315776f2392f8e1c https://www.encodeproject.org/files/ENCFF784KMB/@@download/ENCFF784KMB.bigWig released s3://encode-public/2017/09/13/f3e4b1e5-a849-4b19-84d6-b4609673429d/ENCFF784KMB.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF399ILD bigWig bigWig read-depth normalized signal dm3 ENCSR431TEW Control ChIP-seq /fly-donors/ENCDO965EUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41396/'], '@type': ['Target', 'Item'], 'name': 'CG6813-dmelanogaster', 'label': 'CG6813', '@id': '/targets/CG6813-dmelanogaster/', 'title': 'CG6813 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e700783c-5efe-40d6-9164-4ba016289475', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF350AFG/ 15274077 Kevin White, UChicago c5566761387eef0224d398276b4d813c https://www.encodeproject.org/files/ENCFF399ILD/@@download/ENCFF399ILD.bigWig released s3://encode-public/2017/09/13/6bceeab5-b036-45e8-bbdd-3909b5c83c8f/ENCFF399ILD.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF470VBF bigWig bigWig signal of unique reads dm6 ENCSR431TEW Control ChIP-seq /fly-donors/ENCDO965EUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41396/'], '@type': ['Target', 'Item'], 'name': 'CG6813-dmelanogaster', 'label': 'CG6813', '@id': '/targets/CG6813-dmelanogaster/', 'title': 'CG6813 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e700783c-5efe-40d6-9164-4ba016289475', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF301FCM/ 17473622 Kevin White, UChicago ae25c45e72cac6c646327c476f8bf4df https://www.encodeproject.org/files/ENCFF470VBF/@@download/ENCFF470VBF.bigWig released s3://encode-public/2017/09/14/cc6f3d4b-8d7d-4d8f-8920-14a03c98bd90/ENCFF470VBF.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF173TTC bigWig bigWig read-depth normalized signal dm6 ENCSR431TEW Control ChIP-seq /fly-donors/ENCDO965EUJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41396/'], '@type': ['Target', 'Item'], 'name': 'CG6813-dmelanogaster', 'label': 'CG6813', '@id': '/targets/CG6813-dmelanogaster/', 'title': 'CG6813 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e700783c-5efe-40d6-9164-4ba016289475', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF301FCM/ 17485800 Kevin White, UChicago cecb0c9cfa8e72a78ed41adebef47c30 https://www.encodeproject.org/files/ENCFF173TTC/@@download/ENCFF173TTC.bigWig released s3://encode-public/2017/09/14/45884b98-3dc1-44f3-a26c-471b764fef00/ENCFF173TTC.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF245TXE fastq fastq reads ENCSR995PJE Control ChIP-seq /worm-donors/ENCDO164EGI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188733/'], '@type': ['Target', 'Item'], 'name': 'sptf-2-celegans', 'label': 'sptf-2', '@id': '/targets/sptf-2-celegans/', 'title': 'sptf-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfcaf9cc-f621-422f-98b9-9eae48358c6d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 877743223 Kevin White, UChicago a50ae990d051195489a1744d8a01f551 https://www.encodeproject.org/files/ENCFF245TXE/@@download/ENCFF245TXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/de8934e1-0baa-4a48-8f74-e382399df6b3/ENCFF245TXE.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF197PED bam bam alignments ce11 ENCSR995PJE Control ChIP-seq /worm-donors/ENCDO164EGI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188733/'], '@type': ['Target', 'Item'], 'name': 'sptf-2-celegans', 'label': 'sptf-2', '@id': '/targets/sptf-2-celegans/', 'title': 'sptf-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfcaf9cc-f621-422f-98b9-9eae48358c6d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF245TXE/, /files/ENCFF586MOL/ 1141135798 Kevin White, UChicago 5fdf6935f5fdd3c359ff0291925c1146 https://www.encodeproject.org/files/ENCFF197PED/@@download/ENCFF197PED.bam released s3://encode-public/2018/09/17/c5bf0a02-8374-4ad7-b132-5295dea55487/ENCFF197PED.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF756LCZ bigWig bigWig read-depth normalized signal ce11 ENCSR995PJE Control ChIP-seq /worm-donors/ENCDO164EGI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188733/'], '@type': ['Target', 'Item'], 'name': 'sptf-2-celegans', 'label': 'sptf-2', '@id': '/targets/sptf-2-celegans/', 'title': 'sptf-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfcaf9cc-f621-422f-98b9-9eae48358c6d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF197PED/ 9975318 Kevin White, UChicago c3d876d37f6309a7a3eb364b14c06788 https://www.encodeproject.org/files/ENCFF756LCZ/@@download/ENCFF756LCZ.bigWig released s3://encode-public/2018/09/18/be7ce4dd-e8cf-4140-80e2-22caa3b71623/ENCFF756LCZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF568HNH bigWig bigWig signal of unique reads ce11 ENCSR995PJE Control ChIP-seq /worm-donors/ENCDO164EGI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188733/'], '@type': ['Target', 'Item'], 'name': 'sptf-2-celegans', 'label': 'sptf-2', '@id': '/targets/sptf-2-celegans/', 'title': 'sptf-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'cfcaf9cc-f621-422f-98b9-9eae48358c6d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF197PED/ 9993137 Kevin White, UChicago 807bec452defbc2ff224f7687781954e https://www.encodeproject.org/files/ENCFF568HNH/@@download/ENCFF568HNH.bigWig released s3://encode-public/2018/09/18/6790f5d7-b722-411f-98ea-b4fdbae60ff0/ENCFF568HNH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF880COG fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 802527208 Bradley Bernstein, Broad 777891261a2c4c932cca8214f0747f6e SRA:SRR13804867 https://www.encodeproject.org/files/ENCFF880COG/@@download/ENCFF880COG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b316715a-6cce-4c13-8aa5-9ef1831db617/ENCFF880COG.fastq.gz ENCFF079ZJV fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 807936045 Bradley Bernstein, Broad 386ca1dc4400ee08982c18c8a5d8881a SRA:SRR13804868 https://www.encodeproject.org/files/ENCFF079ZJV/@@download/ENCFF079ZJV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/34d61f90-788c-4e69-8b7b-e1b7274e37f3/ENCFF079ZJV.fastq.gz ENCFF239ASS fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 801359845 Bradley Bernstein, Broad 3e8be731db7c6b414f285d2e1f8ff51e SRA:SRR13804869 https://www.encodeproject.org/files/ENCFF239ASS/@@download/ENCFF239ASS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/73fe9a26-7cf4-4b68-822e-47b620ac0d5b/ENCFF239ASS.fastq.gz ENCFF420LBB fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 444477461 Bradley Bernstein, Broad 32115c92ed427780b40926ef48316eee SRA:SRR13804863 https://www.encodeproject.org/files/ENCFF420LBB/@@download/ENCFF420LBB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/48d6753c-e7a2-4ec0-9ef3-0e486bda36bf/ENCFF420LBB.fastq.gz ENCFF126LFI fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 447089031 Bradley Bernstein, Broad b6a327cf1a0a25b26c74bdf0b1ea3908 SRA:SRR13804864 https://www.encodeproject.org/files/ENCFF126LFI/@@download/ENCFF126LFI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/76c3a795-9b2f-4992-9afe-f29c125e2de6/ENCFF126LFI.fastq.gz ENCFF427MOO fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 450690471 Bradley Bernstein, Broad 5c6e2ae8c7b48ccca254fb8f7a66b7e9 SRA:SRR13804865 https://www.encodeproject.org/files/ENCFF427MOO/@@download/ENCFF427MOO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e40d8ac1-75fc-4fdf-84bb-b3b38aab812f/ENCFF427MOO.fastq.gz ENCFF730HYT fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 438249482 Bradley Bernstein, Broad be162b83e83c00d728e0c21ef3c15a40 SRA:SRR13804866 https://www.encodeproject.org/files/ENCFF730HYT/@@download/ENCFF730HYT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/df5df166-512f-4e76-aa7d-6b5135938ff5/ENCFF730HYT.fastq.gz ENCFF978MPY fastq fastq reads ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 793104726 Bradley Bernstein, Broad f02442cf11fb76d3c628cc943cb16ad7 SRA:SRR13804870 https://www.encodeproject.org/files/ENCFF978MPY/@@download/ENCFF978MPY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/1acc601e-677d-411e-9650-577b2dbb6443/ENCFF978MPY.fastq.gz ENCFF041GWX bam bam alignments GRCh38 ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF427MOO/, /files/ENCFF880COG/, /files/ENCFF239ASS/, /files/ENCFF420LBB/, /files/ENCFF079ZJV/, /files/ENCFF978MPY/, /files/ENCFF110MCL/, /files/ENCFF126LFI/, /files/ENCFF730HYT/ 3984771596 ENCODE Processing Pipeline 20cd0d7e91b97849f530d7f0cb46e93d https://www.encodeproject.org/files/ENCFF041GWX/@@download/ENCFF041GWX.bam released s3://encode-public/2020/06/14/a288971b-0734-4c1b-a4c3-7cac94d9a8af/ENCFF041GWX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF924IPX bam bam unfiltered alignments GRCh38 ENCSR749YQP Control ChIP-seq /human-donors/ENCDO575WHY/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF427MOO/, /files/ENCFF880COG/, /files/ENCFF239ASS/, /files/ENCFF420LBB/, /files/ENCFF079ZJV/, /files/ENCFF978MPY/, /files/ENCFF110MCL/, /files/ENCFF126LFI/, /files/ENCFF730HYT/ 4738130754 ENCODE Processing Pipeline dacd6e8fe95ab241baabb5c32c94d6d5 https://www.encodeproject.org/files/ENCFF924IPX/@@download/ENCFF924IPX.bam released s3://encode-public/2020/06/14/81d00ad1-74ca-430e-8c1c-27f5ae6399a9/ENCFF924IPX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF588HTX fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 single-ended 1749141573 Bradley Bernstein, Broad 598ddf86c62bd8c53e8b5701bac86a2a https://www.encodeproject.org/files/ENCFF588HTX/@@download/ENCFF588HTX.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2015/05/21/c9fa58de-0c27-4f7f-81a4-53fc087e785e/ENCFF588HTX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF126GOB fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF146JNK/ 1492594238 Bradley Bernstein, Broad 10d9404713908d6248b79d0f44dfe25e SRA:SRR5331608 https://www.encodeproject.org/files/ENCFF126GOB/@@download/ENCFF126GOB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/3ca6c076-f7d8-46be-9c8a-d3d25be21e8b/ENCFF126GOB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF146JNK fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 paired-ended 2 /files/ENCFF126GOB/ 1529048765 Bradley Bernstein, Broad 7b15be6f1667b46dd62fb08998e1da49 SRA:SRR5331608 https://www.encodeproject.org/files/ENCFF146JNK/@@download/ENCFF146JNK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/c5b1acec-8d29-43bf-a9b4-2272a6e7ba5d/ENCFF146JNK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF869EIB fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 paired-ended 1 /files/ENCFF300LJR/ 1467665309 Bradley Bernstein, Broad 74cf2124fbeec44b8955a07a7077d401 SRA:SRR5331609 https://www.encodeproject.org/files/ENCFF869EIB/@@download/ENCFF869EIB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/26cd144e-73ac-4d92-a8b4-0960ee2a7057/ENCFF869EIB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF300LJR fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 paired-ended 2 /files/ENCFF869EIB/ 1506748621 Bradley Bernstein, Broad 22296d8ec79c7343ab6e8dcebf68b064 SRA:SRR5331609 https://www.encodeproject.org/files/ENCFF300LJR/@@download/ENCFF300LJR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/004fd988-4ebc-4935-9d3d-c206b453c34a/ENCFF300LJR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF546EIX fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 paired-ended 2 /files/ENCFF116RUN/ 3769136632 Bradley Bernstein, Broad 1a8b50abb0c68e415f4427d93b5be779 SRA:SRR5331610 https://www.encodeproject.org/files/ENCFF546EIX/@@download/ENCFF546EIX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/18212168-7126-479a-a19e-f0b0e0bfd2ce/ENCFF546EIX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF116RUN fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF546EIX/ 3698587790 Bradley Bernstein, Broad 6d0afdbae602080200ba51977ce732ae SRA:SRR5331610 https://www.encodeproject.org/files/ENCFF116RUN/@@download/ENCFF116RUN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/d19dec46-312b-4a37-9c92-0d28eb1b832c/ENCFF116RUN.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF641CIT fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 paired-ended 1 /files/ENCFF470CVX/ 3758680053 Bradley Bernstein, Broad d3ba2841fb80732cf7f3a98ea5e81b05 SRA:SRR5331611 https://www.encodeproject.org/files/ENCFF641CIT/@@download/ENCFF641CIT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/b38aea26-ef3c-4130-8361-d3c698244b2f/ENCFF641CIT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF045ZAS fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 single-ended 1787291769 Bradley Bernstein, Broad 10300f65a333dacd173afd1a9c3bb4aa https://www.encodeproject.org/files/ENCFF045ZAS/@@download/ENCFF045ZAS.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/b13d7e3a-60c9-446d-a7a8-6d1bb51ccc50/ENCFF045ZAS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF470CVX fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 paired-ended 2 /files/ENCFF641CIT/ 3826329979 Bradley Bernstein, Broad ff93663fbb2cff9339fd20ff639bf605 SRA:SRR5331611 https://www.encodeproject.org/files/ENCFF470CVX/@@download/ENCFF470CVX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/175c4137-2918-48b3-a535-c0cc00fc8a92/ENCFF470CVX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF775IOE fastq fastq reads ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 single-ended 1797303137 Bradley Bernstein, Broad fbf299928b8f9644e83bd31a3a1bda2f https://www.encodeproject.org/files/ENCFF775IOE/@@download/ENCFF775IOE.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/ff1387ba-6fd4-48fc-a73a-703337388831/ENCFF775IOE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF571VVW bam bam alignments hg19 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF869EIB/, /files/ENCFF807MUK/, /files/ENCFF300LJR/ 3431493266 ENCODE Processing Pipeline 28a45e1fa85415bdd760b6135288f64d https://www.encodeproject.org/files/ENCFF571VVW/@@download/ENCFF571VVW.bam released s3://encode-public/2016/10/26/04e9551d-aedf-4826-bde2-69a67272f3bf/ENCFF571VVW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF458IRD bam bam unfiltered alignments hg19 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF869EIB/, /files/ENCFF807MUK/, /files/ENCFF300LJR/ 5407068530 ENCODE Processing Pipeline 6125986fa704925c5094dd8e4531fa14 https://www.encodeproject.org/files/ENCFF458IRD/@@download/ENCFF458IRD.bam released s3://encode-public/2016/10/26/74e2c9cf-3c8d-4006-a620-eaeb9566d680/ENCFF458IRD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF956GLJ bam bam alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF869EIB/, /files/ENCFF300LJR/, /files/ENCFF643CGH/ 3436216404 ENCODE Processing Pipeline b3c464caac74544bfcf3ac4464b8aaaf https://www.encodeproject.org/files/ENCFF956GLJ/@@download/ENCFF956GLJ.bam released s3://encode-public/2016/10/26/3667c66f-6b8a-4e26-b753-b8addcafa3c5/ENCFF956GLJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF333KJQ bam bam unfiltered alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF869EIB/, /files/ENCFF300LJR/, /files/ENCFF643CGH/ 5419350904 ENCODE Processing Pipeline 250c0314733ec668863829668328bf61 https://www.encodeproject.org/files/ENCFF333KJQ/@@download/ENCFF333KJQ.bam released s3://encode-public/2016/10/26/f26a1f0d-5488-4352-abbc-f6096171d028/ENCFF333KJQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF286BOX bam bam unfiltered alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 /files/ENCFF116RUN/, /files/ENCFF643CGH/, /files/ENCFF546EIX/, /files/ENCFF470CVX/, /files/ENCFF641CIT/ 13580397702 ENCODE Processing Pipeline bea09e7908562f3d74c00a4a93887e87 https://www.encodeproject.org/files/ENCFF286BOX/@@download/ENCFF286BOX.bam released s3://encode-public/2016/10/28/be3e3ec8-e831-4a27-b0f2-7c0d354e087e/ENCFF286BOX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF626LZE bam bam unfiltered alignments hg19 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 /files/ENCFF116RUN/, /files/ENCFF807MUK/, /files/ENCFF546EIX/, /files/ENCFF470CVX/, /files/ENCFF641CIT/ 13542121944 ENCODE Processing Pipeline ea4e9fea353038018f421968974b0ae1 https://www.encodeproject.org/files/ENCFF626LZE/@@download/ENCFF626LZE.bam released s3://encode-public/2016/10/28/f4eb917b-1c67-4846-b82a-183815b92dde/ENCFF626LZE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF093OXI bam bam alignments hg19 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 /files/ENCFF116RUN/, /files/ENCFF807MUK/, /files/ENCFF546EIX/, /files/ENCFF470CVX/, /files/ENCFF641CIT/ 11218197414 ENCODE Processing Pipeline 5922149c39db35d96fd5954d26abec8e https://www.encodeproject.org/files/ENCFF093OXI/@@download/ENCFF093OXI.bam released s3://encode-public/2016/10/28/8c350566-744b-4a71-948f-a8fbda609734/ENCFF093OXI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF687LIL bam bam alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 /files/ENCFF116RUN/, /files/ENCFF643CGH/, /files/ENCFF546EIX/, /files/ENCFF470CVX/, /files/ENCFF641CIT/ 11233474909 ENCODE Processing Pipeline 9c47203d4c5dee81389c22f579bc62dc https://www.encodeproject.org/files/ENCFF687LIL/@@download/ENCFF687LIL.bam released s3://encode-public/2016/10/28/1ed134af-72f7-43f5-87a6-15e6319c754f/ENCFF687LIL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF260KUD bam bam unfiltered alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 /files/ENCFF869EIB/, /files/ENCFF300LJR/, /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF110MCL/ 5500672265 ENCODE Processing Pipeline 36b4dac2cfc58bd8cf0e4862ebf28fa2 https://www.encodeproject.org/files/ENCFF260KUD/@@download/ENCFF260KUD.bam released s3://encode-public/2020/10/19/3a97986a-5dc7-42ef-9b8c-15f7db845285/ENCFF260KUD.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF552ZGG bam bam alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 1 1_1 76 /files/ENCFF869EIB/, /files/ENCFF300LJR/, /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF110MCL/ 3492981262 ENCODE Processing Pipeline 98a86c8e21ff652d6d752c9812059a81 https://www.encodeproject.org/files/ENCFF552ZGG/@@download/ENCFF552ZGG.bam released s3://encode-public/2020/10/19/b770074f-c1e4-4534-bcb2-1444e5542c2b/ENCFF552ZGG.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF554GOP bam bam unfiltered alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 /files/ENCFF641CIT/, /files/ENCFF470CVX/, /files/ENCFF110MCL/, /files/ENCFF546EIX/, /files/ENCFF116RUN/ 13759434064 ENCODE Processing Pipeline cd095f9e13204ddf7fa6de0f73b3ef98 https://www.encodeproject.org/files/ENCFF554GOP/@@download/ENCFF554GOP.bam released s3://encode-public/2020/10/19/f39a076b-50b9-4f8b-9b8c-f7c8d5ff7fc0/ENCFF554GOP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF915SOO bam bam alignments GRCh38 ENCSR001KCX Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2015-08-03 ENCODE 200-600 2 2_1 76 /files/ENCFF641CIT/, /files/ENCFF470CVX/, /files/ENCFF110MCL/, /files/ENCFF546EIX/, /files/ENCFF116RUN/ 11434444203 ENCODE Processing Pipeline b38f57039f5fe3f477fee77325a3242f https://www.encodeproject.org/files/ENCFF915SOO/@@download/ENCFF915SOO.bam released s3://encode-public/2020/10/19/d64fccdd-4f83-4c40-8a91-7d9d9e132e6d/ENCFF915SOO.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF471MRR fastq fastq reads ENCSR865FZO Control ChIP-seq /fly-donors/ENCDO669YIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35683/'], '@type': ['Target', 'Item'], 'name': 'CG1603-dmelanogaster', 'label': 'CG1603', '@id': '/targets/CG1603-dmelanogaster/', 'title': 'CG1603 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6cb6697-b0e4-4abd-bbf2-f49144c386e4', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 876649604 Kevin White, UChicago e70fe9e8b85199a6a203a073e407dc65 https://www.encodeproject.org/files/ENCFF471MRR/@@download/ENCFF471MRR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/c031884c-e8af-41f2-be50-ffe67e65dc1c/ENCFF471MRR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF821SNZ bam bam alignments dm6 ENCSR865FZO Control ChIP-seq /fly-donors/ENCDO669YIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35683/'], '@type': ['Target', 'Item'], 'name': 'CG1603-dmelanogaster', 'label': 'CG1603', '@id': '/targets/CG1603-dmelanogaster/', 'title': 'CG1603 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6cb6697-b0e4-4abd-bbf2-f49144c386e4', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF471MRR/, /files/ENCFF479RCH/ 1165663413 Kevin White, UChicago 04f36440111699da1e0a320270b99835 https://www.encodeproject.org/files/ENCFF821SNZ/@@download/ENCFF821SNZ.bam released s3://encode-public/2019/04/13/0c376d77-1369-445a-9df8-6ed9fbc0a1b3/ENCFF821SNZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF092KBM bigWig bigWig read-depth normalized signal dm6 ENCSR865FZO Control ChIP-seq /fly-donors/ENCDO669YIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35683/'], '@type': ['Target', 'Item'], 'name': 'CG1603-dmelanogaster', 'label': 'CG1603', '@id': '/targets/CG1603-dmelanogaster/', 'title': 'CG1603 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6cb6697-b0e4-4abd-bbf2-f49144c386e4', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF821SNZ/ 17776702 Kevin White, UChicago 7c972a8cad90dff53b21861f606f7461 https://www.encodeproject.org/files/ENCFF092KBM/@@download/ENCFF092KBM.bigWig released s3://encode-public/2019/04/16/23c5f3ba-3675-4848-9b01-d6b24c4557ad/ENCFF092KBM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF366ZTK bigWig bigWig signal of unique reads dm6 ENCSR865FZO Control ChIP-seq /fly-donors/ENCDO669YIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35683/'], '@type': ['Target', 'Item'], 'name': 'CG1603-dmelanogaster', 'label': 'CG1603', '@id': '/targets/CG1603-dmelanogaster/', 'title': 'CG1603 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6cb6697-b0e4-4abd-bbf2-f49144c386e4', 'status': 'released'} dm3 2R 3390042 3411731 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF821SNZ/ 17752183 Kevin White, UChicago c0311382fbac84ac43c629e43430a89c https://www.encodeproject.org/files/ENCFF366ZTK/@@download/ENCFF366ZTK.bigWig released s3://encode-public/2019/04/16/397764c1-0887-4488-a966-f2149eb89227/ENCFF366ZTK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF041RFD fastq fastq reads ENCSR200QAA Control ChIP-seq /human-donors/ENCDO221IPH/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 997954683 Bradley Bernstein, Broad 9a73db2f2fecf83c10a355210f22056a SRA:SRR13804385 https://www.encodeproject.org/files/ENCFF041RFD/@@download/ENCFF041RFD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/bcf5b3bd-1b13-41d5-a913-8d9721712139/ENCFF041RFD.fastq.gz ENCFF201BTE fastq fastq reads ENCSR200QAA Control ChIP-seq /human-donors/ENCDO221IPH/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 1006142850 Bradley Bernstein, Broad b639de71e99495837a4f097d6d1a22a3 SRA:SRR13804386 https://www.encodeproject.org/files/ENCFF201BTE/@@download/ENCFF201BTE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/cf43a0dd-019e-475f-b4f4-7125d9b5b11f/ENCFF201BTE.fastq.gz ENCFF504FPW fastq fastq reads ENCSR200QAA Control ChIP-seq /human-donors/ENCDO221IPH/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 991438898 Bradley Bernstein, Broad 2047afee9c3d7fe68c7f8a2c84762d74 SRA:SRR13804387 https://www.encodeproject.org/files/ENCFF504FPW/@@download/ENCFF504FPW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3bfd2a81-0fdf-4168-bf5e-ff51cec5a33c/ENCFF504FPW.fastq.gz ENCFF759AKF fastq fastq reads ENCSR200QAA Control ChIP-seq /human-donors/ENCDO221IPH/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 981949038 Bradley Bernstein, Broad 85d60ff16c71276d02b55d51822fdd0c SRA:SRR13804388 https://www.encodeproject.org/files/ENCFF759AKF/@@download/ENCFF759AKF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/46d5aff9-22c3-481b-9e1d-928a3e480ad6/ENCFF759AKF.fastq.gz ENCFF809AUP bam bam unfiltered alignments GRCh38 ENCSR200QAA Control ChIP-seq /human-donors/ENCDO221IPH/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF041RFD/, /files/ENCFF110MCL/, /files/ENCFF504FPW/, /files/ENCFF759AKF/, /files/ENCFF201BTE/ 3890928249 ENCODE Processing Pipeline 7ed1b0a876a0c48e1759b946eb8b1cd7 https://www.encodeproject.org/files/ENCFF809AUP/@@download/ENCFF809AUP.bam released s3://encode-public/2020/07/08/bb6c7c1d-23ea-4630-95fa-0f49b39b906c/ENCFF809AUP.bam ENCODE4 v1.5.0 GRCh38 released ENCFF254QJF bam bam alignments GRCh38 ENCSR200QAA Control ChIP-seq /human-donors/ENCDO221IPH/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF041RFD/, /files/ENCFF110MCL/, /files/ENCFF504FPW/, /files/ENCFF759AKF/, /files/ENCFF201BTE/ 3271634570 ENCODE Processing Pipeline d9d5260eca25933ccef122e1830743d1 https://www.encodeproject.org/files/ENCFF254QJF/@@download/ENCFF254QJF.bam released s3://encode-public/2020/07/08/7334efa5-3f21-4776-a877-6d44b9b4c8c9/ENCFF254QJF.bam ENCODE4 v1.5.0 GRCh38 released ENCFF819UOF fastq fastq reads ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF036WQP/ 5915335913 Michael Snyder, Stanford 1978bf83e71e6e1c6cd2e49934ec4a27 SRA:SRR6212991 https://www.encodeproject.org/files/ENCFF819UOF/@@download/ENCFF819UOF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/82c3d015-c0a3-488d-9a7b-863c89109a93/ENCFF819UOF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF036WQP fastq fastq reads ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF819UOF/ 7074492973 Michael Snyder, Stanford 5697e5f832695ec29eaa4c296abb0269 SRA:SRR6212991 https://www.encodeproject.org/files/ENCFF036WQP/@@download/ENCFF036WQP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/119d55d9-5cd4-4170-8521-d629b412ceda/ENCFF036WQP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF603UHJ bam bam unfiltered alignments hg19 ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF036WQP/, /files/ENCFF819UOF/ 10319694521 ENCODE Processing Pipeline 8cff3c7da8e6c35683c750d2568e3310 https://www.encodeproject.org/files/ENCFF603UHJ/@@download/ENCFF603UHJ.bam released s3://encode-public/2016/10/27/0fe4665b-a45a-4dcf-aba6-c93368d69093/ENCFF603UHJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF492MLX bam bam alignments hg19 ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF036WQP/, /files/ENCFF819UOF/ 5289083923 ENCODE Processing Pipeline 10baf0a50db0c5b418f64e73baf9e51f https://www.encodeproject.org/files/ENCFF492MLX/@@download/ENCFF492MLX.bam released s3://encode-public/2016/10/27/5f101c7e-f465-4141-9fde-dff9e470a60d/ENCFF492MLX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF736QIO bam bam unfiltered alignments GRCh38 ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF036WQP/, /files/ENCFF819UOF/, /files/ENCFF643CGH/ 10298428718 ENCODE Processing Pipeline b095e87a89f74c358848c9326a2e176e https://www.encodeproject.org/files/ENCFF736QIO/@@download/ENCFF736QIO.bam released s3://encode-public/2016/10/27/99ea348b-660c-4fc0-80aa-180e7e16659d/ENCFF736QIO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF206AIY bam bam alignments GRCh38 ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF036WQP/, /files/ENCFF819UOF/, /files/ENCFF643CGH/ 5301563067 ENCODE Processing Pipeline c7cdd5d6e63c8b0d8abc5fb5408fb19c https://www.encodeproject.org/files/ENCFF206AIY/@@download/ENCFF206AIY.bam released s3://encode-public/2016/10/27/5fed1a4a-52dc-4c45-819d-b5d681bde506/ENCFF206AIY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF506DBB bam bam unfiltered alignments GRCh38 ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF819UOF/, /files/ENCFF036WQP/ 10348769209 ENCODE Processing Pipeline 2c2fcc4c94b142cd44f2fd323106683e https://www.encodeproject.org/files/ENCFF506DBB/@@download/ENCFF506DBB.bam released s3://encode-public/2020/06/02/08858471-c527-49b0-97e5-da1fed306bb9/ENCFF506DBB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF109EAI bam bam alignments GRCh38 ENCSR262CPH Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF819UOF/, /files/ENCFF036WQP/ 5170908402 ENCODE Processing Pipeline f8a5b8cd41ecb9f6db38d60371066765 https://www.encodeproject.org/files/ENCFF109EAI/@@download/ENCFF109EAI.bam released s3://encode-public/2020/06/02/f4841e19-9dd6-40f0-a2b9-f424277ac383/ENCFF109EAI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF489WAD fastq fastq reads ENCSR555SGB Control ChIP-seq /fly-donors/ENCDO531GXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768974/'], '@type': ['Target', 'Item'], 'name': 'ind-dmelanogaster', 'label': 'ind', '@id': '/targets/ind-dmelanogaster/', 'title': 'ind (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '05d51f03-9ca4-47a2-a918-92e192c7c390', 'status': 'released'} dm3 3L 15033708 15055537 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1364974267 Kevin White, UChicago 02856d1a8d912e90dde03ad153ad7ff0 https://www.encodeproject.org/files/ENCFF489WAD/@@download/ENCFF489WAD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/e88351af-3cdf-470b-86c1-83fceee7204a/ENCFF489WAD.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF232JVR bam bam alignments dm3 ENCSR555SGB Control ChIP-seq /fly-donors/ENCDO531GXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768974/'], '@type': ['Target', 'Item'], 'name': 'ind-dmelanogaster', 'label': 'ind', '@id': '/targets/ind-dmelanogaster/', 'title': 'ind (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '05d51f03-9ca4-47a2-a918-92e192c7c390', 'status': 'released'} dm3 3L 15033708 15055537 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF489WAD/, /files/ENCFF059UHX/ 1656832455 Kevin White, UChicago 734d2a92210f63ecdcbedcb0e9ca95c5 https://www.encodeproject.org/files/ENCFF232JVR/@@download/ENCFF232JVR.bam released s3://encode-public/2016/08/03/bd2863c9-405f-4bd2-ab69-738d801060ee/ENCFF232JVR.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF448PUN bam bam alignments dm6 ENCSR555SGB Control ChIP-seq /fly-donors/ENCDO531GXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768974/'], '@type': ['Target', 'Item'], 'name': 'ind-dmelanogaster', 'label': 'ind', '@id': '/targets/ind-dmelanogaster/', 'title': 'ind (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '05d51f03-9ca4-47a2-a918-92e192c7c390', 'status': 'released'} dm3 3L 15033708 15055537 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF489WAD/, /files/ENCFF479RCH/ 1649840430 Kevin White, UChicago 38438eaaa03839814b0916e56e56b8ce https://www.encodeproject.org/files/ENCFF448PUN/@@download/ENCFF448PUN.bam released s3://encode-public/2016/08/04/0f3d3545-8143-4b54-ac2c-768d7496028c/ENCFF448PUN.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF911PDR bigWig bigWig signal of unique reads dm3 ENCSR555SGB Control ChIP-seq /fly-donors/ENCDO531GXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768974/'], '@type': ['Target', 'Item'], 'name': 'ind-dmelanogaster', 'label': 'ind', '@id': '/targets/ind-dmelanogaster/', 'title': 'ind (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '05d51f03-9ca4-47a2-a918-92e192c7c390', 'status': 'released'} dm3 3L 15033708 15055537 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF232JVR/ 15502400 Kevin White, UChicago 51550f7c7b7ef918deacbcefd0f4cf47 https://www.encodeproject.org/files/ENCFF911PDR/@@download/ENCFF911PDR.bigWig released s3://encode-public/2016/08/04/a74c3ae9-e1f4-4640-be3a-bcf7eeebead3/ENCFF911PDR.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF333DVW bigWig bigWig read-depth normalized signal dm3 ENCSR555SGB Control ChIP-seq /fly-donors/ENCDO531GXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768974/'], '@type': ['Target', 'Item'], 'name': 'ind-dmelanogaster', 'label': 'ind', '@id': '/targets/ind-dmelanogaster/', 'title': 'ind (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '05d51f03-9ca4-47a2-a918-92e192c7c390', 'status': 'released'} dm3 3L 15033708 15055537 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF232JVR/ 15484467 Kevin White, UChicago bd0bf31a7ffa7af17fffca5dba8b3863 https://www.encodeproject.org/files/ENCFF333DVW/@@download/ENCFF333DVW.bigWig released s3://encode-public/2016/08/04/f4807c89-a495-4be9-9600-0b3859f02395/ENCFF333DVW.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF305CHL bigWig bigWig read-depth normalized signal dm6 ENCSR555SGB Control ChIP-seq /fly-donors/ENCDO531GXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768974/'], '@type': ['Target', 'Item'], 'name': 'ind-dmelanogaster', 'label': 'ind', '@id': '/targets/ind-dmelanogaster/', 'title': 'ind (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '05d51f03-9ca4-47a2-a918-92e192c7c390', 'status': 'released'} dm3 3L 15033708 15055537 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF448PUN/ 17581881 Kevin White, UChicago a3685914a7b03f4a3180608b5b3c129b https://www.encodeproject.org/files/ENCFF305CHL/@@download/ENCFF305CHL.bigWig released s3://encode-public/2016/08/04/263ea3f1-c5c4-45f8-bf73-b293d84e8300/ENCFF305CHL.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF173XFW bigWig bigWig signal of unique reads dm6 ENCSR555SGB Control ChIP-seq /fly-donors/ENCDO531GXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768974/'], '@type': ['Target', 'Item'], 'name': 'ind-dmelanogaster', 'label': 'ind', '@id': '/targets/ind-dmelanogaster/', 'title': 'ind (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '05d51f03-9ca4-47a2-a918-92e192c7c390', 'status': 'released'} dm3 3L 15033708 15055537 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF448PUN/ 17595907 Kevin White, UChicago 045899d1f92c8822717406ec87d1f6c6 https://www.encodeproject.org/files/ENCFF173XFW/@@download/ENCFF173XFW.bigWig released s3://encode-public/2016/08/04/2dabfa0d-e1c2-438e-b709-32dd7ebc4007/ENCFF173XFW.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF913HBX bam bam unfiltered alignments hg19 ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF769QGP/, /files/ENCFF860YMH/ 4949536829 ENCODE Processing Pipeline 9cdba166b9a3dc0a0e7193df53191808 https://www.encodeproject.org/files/ENCFF913HBX/@@download/ENCFF913HBX.bam released s3://encode-public/2018/02/21/57de0e25-747d-4d5b-87be-e9edd51f7af0/ENCFF913HBX.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF860YMH fastq fastq reads ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF769QGP/ 2260652387 Michael Snyder, Stanford 09c2c8eed5a92f505c56d534e03647ea SRA:SRR5111276 https://www.encodeproject.org/files/ENCFF860YMH/@@download/ENCFF860YMH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/739adf5c-bfe2-4f0b-abc5-7df60197cb93/ENCFF860YMH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF769QGP fastq fastq reads ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF860YMH/ 2268223414 Michael Snyder, Stanford bc7a4e968e43bf6dc963849b8298c5c6 SRA:SRR5111276 https://www.encodeproject.org/files/ENCFF769QGP/@@download/ENCFF769QGP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/afe604cb-2fe4-4033-98ae-550090de02a3/ENCFF769QGP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF936MBZ bam bam alignments hg19 ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF769QGP/, /files/ENCFF860YMH/ 3970479060 ENCODE Processing Pipeline 48be22e5f16cfe17217b2b666767779c https://www.encodeproject.org/files/ENCFF936MBZ/@@download/ENCFF936MBZ.bam released s3://encode-public/2015/12/09/756f1e4c-6e45-43f5-af30-a4b39990b8dd/ENCFF936MBZ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF250MUN bam bam unfiltered alignments GRCh38 ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF769QGP/, /files/ENCFF860YMH/ 4956572355 ENCODE Processing Pipeline ec0027328780e4ec3bea27e9c9f73beb https://www.encodeproject.org/files/ENCFF250MUN/@@download/ENCFF250MUN.bam released s3://encode-public/2016/05/06/8bca2607-d850-434b-a33d-fe943fde930e/ENCFF250MUN.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF700BKM bam bam alignments GRCh38 ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF769QGP/, /files/ENCFF860YMH/ 3974265705 ENCODE Processing Pipeline 2c8c6e66b763b04ebd78403e6892c27e https://www.encodeproject.org/files/ENCFF700BKM/@@download/ENCFF700BKM.bam released s3://encode-public/2016/05/06/4e746661-0ce3-4ac4-8b0a-da0bb982ce4d/ENCFF700BKM.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF393XRA bam bam unfiltered alignments GRCh38 ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF769QGP/, /files/ENCFF110MCL/, /files/ENCFF860YMH/ 4948043663 ENCODE Processing Pipeline ed89ab2c8f9df6dc9b702d58bf05079a https://www.encodeproject.org/files/ENCFF393XRA/@@download/ENCFF393XRA.bam released s3://encode-public/2020/06/13/6f27f601-e59d-4db2-8fd7-ea7d9352015f/ENCFF393XRA.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF624PAN bam bam alignments GRCh38 ENCSR198KYG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:TAF7'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6879/'], '@type': ['Target', 'Item'], 'label': 'TAF7', 'title': 'TAF7 (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '7dfa03aa-e4d9-4ae1-9d87-a45b1670b720', 'schema_version': '14', 'name': 'TAF7-human', '@id': '/targets/TAF7-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF769QGP/, /files/ENCFF110MCL/, /files/ENCFF860YMH/ 3899282868 ENCODE Processing Pipeline de21bf10fc932334297260418d22e0b7 https://www.encodeproject.org/files/ENCFF624PAN/@@download/ENCFF624PAN.bam released s3://encode-public/2020/06/13/8a79eefb-91aa-4c51-a5d9-13ec5874bca0/ENCFF624PAN.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF868MWO fastq fastq reads ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF745ZXO/ 3731121558 Michael Snyder, Stanford 0255b845522edfec82ae5415f4e04e9a SRA:SRR6214090 https://www.encodeproject.org/files/ENCFF868MWO/@@download/ENCFF868MWO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/11/5ee5a822-8987-4885-9f5d-4267ef873ff5/ENCFF868MWO.fastq.gz ENCFF745ZXO fastq fastq reads ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF868MWO/ 3841738027 Michael Snyder, Stanford 19241b544974883227585653f0528fd4 SRA:SRR6214090 https://www.encodeproject.org/files/ENCFF745ZXO/@@download/ENCFF745ZXO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/11/bc4a3c33-b0ec-4ea2-9f05-6bf31e45da97/ENCFF745ZXO.fastq.gz ENCFF926HWQ fastq fastq reads ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF776RZI/ 4575545193 Michael Snyder, Stanford 9f65654e9fe700f8a3ddbb2cb146fd1c SRA:SRR6214089 https://www.encodeproject.org/files/ENCFF926HWQ/@@download/ENCFF926HWQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/11/6f78c99a-0689-47d6-9cb9-25f052470e1f/ENCFF926HWQ.fastq.gz ENCFF776RZI fastq fastq reads ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF926HWQ/ 4652482380 Michael Snyder, Stanford f1a69b2ae89bfde1eaf237217dc668c4 SRA:SRR6214089 https://www.encodeproject.org/files/ENCFF776RZI/@@download/ENCFF776RZI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/11/49a46777-42a8-483f-ab91-a5517a3a67ee/ENCFF776RZI.fastq.gz ENCFF995LYG bam bam unfiltered alignments hg19 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF745ZXO/, /files/ENCFF868MWO/, /files/ENCFF807MUK/ 8337554219 ENCODE Processing Pipeline 39852d74ec8df13f1aba1a12971f0989 https://www.encodeproject.org/files/ENCFF995LYG/@@download/ENCFF995LYG.bam released s3://encode-public/2016/11/25/e6513667-fc78-47de-8afb-6d7553841ac8/ENCFF995LYG.bam ENCODE3 hg19 archived ENCFF358VYQ bam bam unfiltered alignments hg19 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF926HWQ/, /files/ENCFF776RZI/, /files/ENCFF807MUK/ 9990483746 ENCODE Processing Pipeline fc9cec0f8effdcb008f9f3dc1dc92644 https://www.encodeproject.org/files/ENCFF358VYQ/@@download/ENCFF358VYQ.bam released s3://encode-public/2016/11/25/49909200-607f-4595-ab63-457db24f9c2f/ENCFF358VYQ.bam ENCODE3 hg19 archived ENCFF083RXK bam bam unfiltered alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF745ZXO/, /files/ENCFF868MWO/, /files/ENCFF643CGH/ 8359364144 ENCODE Processing Pipeline 974748f3bda42e1d693e0ad923c8ff43 https://www.encodeproject.org/files/ENCFF083RXK/@@download/ENCFF083RXK.bam released s3://encode-public/2016/11/25/a2336199-b47b-4583-9522-cc938c93c1d4/ENCFF083RXK.bam ENCODE3 GRCh38 archived ENCFF856LCB bam bam unfiltered alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF926HWQ/, /files/ENCFF776RZI/, /files/ENCFF643CGH/ 10013948576 ENCODE Processing Pipeline 5e2118ef0997139c07fc080fa53ca517 https://www.encodeproject.org/files/ENCFF856LCB/@@download/ENCFF856LCB.bam released s3://encode-public/2016/11/25/0347727d-647e-4aaa-8695-b1aeef620bb2/ENCFF856LCB.bam ENCODE3 GRCh38 archived ENCFF483ELD bam bam alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF745ZXO/, /files/ENCFF868MWO/, /files/ENCFF643CGH/ 6944109982 ENCODE Processing Pipeline 0af0741acb9abd0f093c0b12ed04c4c9 https://www.encodeproject.org/files/ENCFF483ELD/@@download/ENCFF483ELD.bam released s3://encode-public/2016/11/25/4958f45e-3554-44e4-8d96-b8a81f242a35/ENCFF483ELD.bam ENCODE3 GRCh38 archived ENCFF769UET bam bam alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF926HWQ/, /files/ENCFF776RZI/, /files/ENCFF643CGH/ 8423136744 ENCODE Processing Pipeline 666f0335d73a19a51d2d506817e96057 https://www.encodeproject.org/files/ENCFF769UET/@@download/ENCFF769UET.bam released s3://encode-public/2016/11/25/c17f3fb1-6fd5-47b9-9013-1a987fc4c868/ENCFF769UET.bam ENCODE3 GRCh38 archived ENCFF113PTE bam bam alignments hg19 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF745ZXO/, /files/ENCFF868MWO/, /files/ENCFF807MUK/ 6937658864 ENCODE Processing Pipeline 0ce2487f33f14d175e682904ebe6059d https://www.encodeproject.org/files/ENCFF113PTE/@@download/ENCFF113PTE.bam released s3://encode-public/2016/11/25/24ff7207-d1c7-4173-a0be-45b97ed57e2a/ENCFF113PTE.bam ENCODE3 hg19 archived ENCFF761NWZ bam bam alignments hg19 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF926HWQ/, /files/ENCFF776RZI/, /files/ENCFF807MUK/ 8413948368 ENCODE Processing Pipeline 0ce5fa6628468c12731a2be85e3e944b https://www.encodeproject.org/files/ENCFF761NWZ/@@download/ENCFF761NWZ.bam released s3://encode-public/2016/11/25/5621cbb4-fda6-4ba2-b5ae-c1956645ded0/ENCFF761NWZ.bam ENCODE3 hg19 archived ENCFF476GMM bam bam alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF926HWQ/, /files/ENCFF776RZI/ 8505899256 ENCODE Processing Pipeline b75c8db32f4531a27c176a93a350597d https://www.encodeproject.org/files/ENCFF476GMM/@@download/ENCFF476GMM.bam released s3://encode-public/2020/06/02/439589cf-775e-484d-a522-ad8532b81419/ENCFF476GMM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF096DWM bam bam unfiltered alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF926HWQ/, /files/ENCFF776RZI/ 9963416389 ENCODE Processing Pipeline 6a0748b8a2f69313a763907b90747567 https://www.encodeproject.org/files/ENCFF096DWM/@@download/ENCFF096DWM.bam released s3://encode-public/2020/06/02/1d26c720-6a18-42a3-8b93-59629c40dbe7/ENCFF096DWM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF058ZPW bam bam unfiltered alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF868MWO/, /files/ENCFF745ZXO/ 8321665616 ENCODE Processing Pipeline 59a33db88969cb323d2242373b36f8a3 https://www.encodeproject.org/files/ENCFF058ZPW/@@download/ENCFF058ZPW.bam released s3://encode-public/2020/06/02/abb0d243-1686-4dbc-bbb9-c5b5dc13cde0/ENCFF058ZPW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF615DSM bam bam alignments GRCh38 ENCSR933UGQ Control ChIP-seq /human-donors/ENCDO719HIY/ EFO:0002095 22Rv1 cell line Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF868MWO/, /files/ENCFF745ZXO/ 7084435160 ENCODE Processing Pipeline e8b9aa2f1679dfc5da7b4aa762a46dc6 https://www.encodeproject.org/files/ENCFF615DSM/@@download/ENCFF615DSM.bam released s3://encode-public/2020/06/02/714855aa-5b30-433b-979a-326271f2bc9c/ENCFF615DSM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF888ISZ fastq fastq reads ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF837GYP/ 3104774309 Michael Snyder, Stanford c2ae1a4ddcbec192be4eda657a7ec042 SRA:SRR6212708 https://www.encodeproject.org/files/ENCFF888ISZ/@@download/ENCFF888ISZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/cfc98900-cab2-4ea2-ba1e-bef50a2102d5/ENCFF888ISZ.fastq.gz ENCFF837GYP fastq fastq reads ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF888ISZ/ 3081787385 Michael Snyder, Stanford 33dd7cd3875912ea1ab536ca191ba025 SRA:SRR6212708 https://www.encodeproject.org/files/ENCFF837GYP/@@download/ENCFF837GYP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/361879e1-7856-4cd2-96bc-2656bbd0372a/ENCFF837GYP.fastq.gz ENCFF842AAT fastq fastq reads ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF541WRS/ 3091018672 Michael Snyder, Stanford 520e742d9a77a0f1ada24b1844c23b7d SRA:SRR6212709 https://www.encodeproject.org/files/ENCFF842AAT/@@download/ENCFF842AAT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/59b90c9a-4e34-4454-b01f-e365b6f4f6b6/ENCFF842AAT.fastq.gz ENCFF541WRS fastq fastq reads ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF842AAT/ 3123644474 Michael Snyder, Stanford 6982b422301873c495296f29e3cb26b0 SRA:SRR6212709 https://www.encodeproject.org/files/ENCFF541WRS/@@download/ENCFF541WRS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/227226b9-ec13-4665-b35c-1f15c1088469/ENCFF541WRS.fastq.gz ENCFF942SDK bam bam unfiltered alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF541WRS/, /files/ENCFF643CGH/, /files/ENCFF842AAT/ 6882198779 ENCODE Processing Pipeline 32e0b8c02a58e36769b07f69055629b1 https://www.encodeproject.org/files/ENCFF942SDK/@@download/ENCFF942SDK.bam released s3://encode-public/2016/12/15/2b7e1daf-1ab0-4bb9-b127-8351bad9b8d9/ENCFF942SDK.bam ENCODE3 GRCh38 archived ENCFF017RHY bam bam unfiltered alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF837GYP/, /files/ENCFF888ISZ/ 6839770056 ENCODE Processing Pipeline 3001d20dbb3785939d9201400c230b7d https://www.encodeproject.org/files/ENCFF017RHY/@@download/ENCFF017RHY.bam released s3://encode-public/2016/12/15/3360216f-6858-4055-aaed-e7933e05bf61/ENCFF017RHY.bam ENCODE3 GRCh38 archived ENCFF623TSM bam bam unfiltered alignments hg19 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF541WRS/, /files/ENCFF807MUK/, /files/ENCFF842AAT/ 6867327886 ENCODE Processing Pipeline fb0795899609fb3c0512e1b7dcdd8feb https://www.encodeproject.org/files/ENCFF623TSM/@@download/ENCFF623TSM.bam released s3://encode-public/2016/12/15/e19d61e0-3c22-4aed-95cf-bbdddc13109b/ENCFF623TSM.bam ENCODE3 hg19 archived ENCFF574AVO bam bam alignments hg19 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF837GYP/, /files/ENCFF888ISZ/ 5887805984 ENCODE Processing Pipeline c8b0d4a3200f54143d3c525504d7c223 https://www.encodeproject.org/files/ENCFF574AVO/@@download/ENCFF574AVO.bam released s3://encode-public/2016/12/15/8c90c19f-9b5a-460e-be7d-d2b7eda35789/ENCFF574AVO.bam ENCODE3 hg19 archived ENCFF711IHQ bam bam alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF837GYP/, /files/ENCFF888ISZ/ 5897674019 ENCODE Processing Pipeline 0080c9a157dd58fd97d1b6738a90aeee https://www.encodeproject.org/files/ENCFF711IHQ/@@download/ENCFF711IHQ.bam released s3://encode-public/2016/12/15/c724cc16-138f-46ee-8889-ca112d4b79ed/ENCFF711IHQ.bam ENCODE3 GRCh38 archived ENCFF630WQI bam bam unfiltered alignments hg19 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF837GYP/, /files/ENCFF888ISZ/ 6824737029 ENCODE Processing Pipeline f20744e611c35930df9b94956a1067f7 https://www.encodeproject.org/files/ENCFF630WQI/@@download/ENCFF630WQI.bam released s3://encode-public/2016/12/15/4f718c0b-863f-41fe-b959-f0a31b113abe/ENCFF630WQI.bam ENCODE3 hg19 archived ENCFF618SCO bam bam alignments hg19 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF541WRS/, /files/ENCFF807MUK/, /files/ENCFF842AAT/ 5978864942 ENCODE Processing Pipeline fd034fdc27f4939f52329af6fded56e9 https://www.encodeproject.org/files/ENCFF618SCO/@@download/ENCFF618SCO.bam released s3://encode-public/2016/12/15/30a1d686-0f01-4ccc-9613-99522a585ccf/ENCFF618SCO.bam ENCODE3 hg19 archived ENCFF213AZI bam bam alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF541WRS/, /files/ENCFF643CGH/, /files/ENCFF842AAT/ 5988507202 ENCODE Processing Pipeline 9d725b978cbdcc1e9928ef7eed13a62a https://www.encodeproject.org/files/ENCFF213AZI/@@download/ENCFF213AZI.bam released s3://encode-public/2016/12/15/6abf7596-164b-4b63-8fe8-6f8fd3dcf58c/ENCFF213AZI.bam ENCODE3 GRCh38 archived ENCFF082ONC bam bam unfiltered alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF837GYP/, /files/ENCFF888ISZ/ 6795219704 ENCODE Processing Pipeline c332bd7b92809cc776819d30c90a48cf https://www.encodeproject.org/files/ENCFF082ONC/@@download/ENCFF082ONC.bam released s3://encode-public/2020/06/03/1d967371-3a00-44e7-bc68-8fd90d9f7cd9/ENCFF082ONC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF230YVN bam bam unfiltered alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF842AAT/, /files/ENCFF541WRS/ 6835431002 ENCODE Processing Pipeline e8651ad920521047d1169512d5762828 https://www.encodeproject.org/files/ENCFF230YVN/@@download/ENCFF230YVN.bam released s3://encode-public/2020/06/03/8a17679f-cf50-4cba-8acf-3831f36030f7/ENCFF230YVN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF617UHH bam bam alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF837GYP/, /files/ENCFF888ISZ/ 5817651514 ENCODE Processing Pipeline da954069e7dc2a88d3f7449cf5e22fa8 https://www.encodeproject.org/files/ENCFF617UHH/@@download/ENCFF617UHH.bam released s3://encode-public/2020/06/03/bc5c75e2-18a7-47dd-9c8f-06c1f22ba143/ENCFF617UHH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF527TMS bam bam alignments GRCh38 ENCSR131SEB Control ChIP-seq /human-donors/ENCDO569WSJ/ CL:0002231 epithelial cell of prostate primary cell Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF842AAT/, /files/ENCFF541WRS/ 5910614819 ENCODE Processing Pipeline 60162a0ea8403fcb7941781063227814 https://www.encodeproject.org/files/ENCFF527TMS/@@download/ENCFF527TMS.bam released s3://encode-public/2020/06/03/80f44ce5-98de-475f-985d-7ac96de52a3f/ENCFF527TMS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF406LUH bam bam unfiltered alignments hg19 ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF487HZM/, /files/ENCFF807MUK/, /files/ENCFF510RBZ/ 2606141626 ENCODE Processing Pipeline 3942ae3948958f384841309ff2836bf6 https://www.encodeproject.org/files/ENCFF406LUH/@@download/ENCFF406LUH.bam released s3://encode-public/2018/02/21/f3944424-64a7-48e4-80f9-b84c0e2b6e94/ENCFF406LUH.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF487HZM fastq fastq reads ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF510RBZ/ 1125726976 Michael Snyder, Stanford 190977af1dc1acbc61251d62706c1aff SRA:SRR5111928 https://www.encodeproject.org/files/ENCFF487HZM/@@download/ENCFF487HZM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/bb313330-edb7-4617-9b05-f65a1ae25de6/ENCFF487HZM.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF510RBZ fastq fastq reads ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF487HZM/ 1141211450 Michael Snyder, Stanford 5856886f85c04f4f4fa8d7f01535e571 SRA:SRR5111928 https://www.encodeproject.org/files/ENCFF510RBZ/@@download/ENCFF510RBZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/80034c99-bf79-4b2d-8aa4-1ba4174e4548/ENCFF510RBZ.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF504MHQ bam bam alignments hg19 ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF487HZM/, /files/ENCFF807MUK/, /files/ENCFF510RBZ/ 2275236270 ENCODE Processing Pipeline a40e71fb0bbf7085bfd09b7378be329e https://www.encodeproject.org/files/ENCFF504MHQ/@@download/ENCFF504MHQ.bam released s3://encode-public/2015/12/09/3ad0b123-1e33-4603-92de-ab31fc97d775/ENCFF504MHQ.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF073ZQP bam bam unfiltered alignments GRCh38 ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF487HZM/, /files/ENCFF643CGH/, /files/ENCFF510RBZ/ 2610770573 ENCODE Processing Pipeline a9e409bd25c4e4d193cd1de71e89172f https://www.encodeproject.org/files/ENCFF073ZQP/@@download/ENCFF073ZQP.bam released s3://encode-public/2016/05/06/cd7a8204-3c77-4aa6-a720-fc60f4a9553d/ENCFF073ZQP.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF102ZZG bam bam alignments GRCh38 ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF487HZM/, /files/ENCFF643CGH/, /files/ENCFF510RBZ/ 2275709558 ENCODE Processing Pipeline af79cb6d478aa5ba348655a524cc9801 https://www.encodeproject.org/files/ENCFF102ZZG/@@download/ENCFF102ZZG.bam released s3://encode-public/2016/05/06/bc4153f2-a088-4ec7-abd0-83e4580384c1/ENCFF102ZZG.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF482PGM bam bam unfiltered alignments GRCh38 ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF487HZM/, /files/ENCFF510RBZ/ 2605678911 ENCODE Processing Pipeline 03afebae4a11fc3585399f71ca9cbd93 https://www.encodeproject.org/files/ENCFF482PGM/@@download/ENCFF482PGM.bam released s3://encode-public/2020/06/13/287d93e8-4d37-4de0-b40a-130a4660c0df/ENCFF482PGM.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF031HEF bam bam alignments GRCh38 ENCSR667RDX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2115/'], '@type': ['Target', 'Item'], 'name': 'ETV1-human', 'label': 'ETV1', '@id': '/targets/ETV1-human/', 'title': 'ETV1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f8d691b2-6da7-4308-b093-9da0c4fec147', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF487HZM/, /files/ENCFF510RBZ/ 2220844390 ENCODE Processing Pipeline 74d38075a48d470683db715b643f2c25 https://www.encodeproject.org/files/ENCFF031HEF/@@download/ENCFF031HEF.bam released s3://encode-public/2020/06/13/e9829184-7ac8-403d-8f0e-0ced8a6f0697/ENCFF031HEF.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF860GJN fastq fastq reads ENCSR629JCM Control ChIP-seq /fly-donors/ENCDO805XUC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35549/'], '@type': ['Target', 'Item'], 'name': 'CG30431-dmelanogaster', 'label': 'CG30431', '@id': '/targets/CG30431-dmelanogaster/', 'title': 'CG30431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e2e0bae-18b5-4805-bef6-7e888f25c815', 'status': 'released'} dm3 2R 2075044 2096858 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 907301462 Kevin White, UChicago 06f691e23b80dc9c1d05bb8c84eb9ac5 https://www.encodeproject.org/files/ENCFF860GJN/@@download/ENCFF860GJN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/2b74de8f-9b76-48e0-9ad1-7dfaaefe81ee/ENCFF860GJN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF680ESC bam bam alignments dm3 ENCSR629JCM Control ChIP-seq /fly-donors/ENCDO805XUC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35549/'], '@type': ['Target', 'Item'], 'name': 'CG30431-dmelanogaster', 'label': 'CG30431', '@id': '/targets/CG30431-dmelanogaster/', 'title': 'CG30431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e2e0bae-18b5-4805-bef6-7e888f25c815', 'status': 'released'} dm3 2R 2075044 2096858 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF860GJN/, /files/ENCFF059UHX/ 1230835385 Kevin White, UChicago e426c120942aeba5a5eba027ac9c3f9d https://www.encodeproject.org/files/ENCFF680ESC/@@download/ENCFF680ESC.bam released s3://encode-public/2016/12/23/bc104408-d8af-4016-b948-164b446fcd5d/ENCFF680ESC.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF661VTP bam bam alignments dm6 ENCSR629JCM Control ChIP-seq /fly-donors/ENCDO805XUC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35549/'], '@type': ['Target', 'Item'], 'name': 'CG30431-dmelanogaster', 'label': 'CG30431', '@id': '/targets/CG30431-dmelanogaster/', 'title': 'CG30431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e2e0bae-18b5-4805-bef6-7e888f25c815', 'status': 'released'} dm3 2R 2075044 2096858 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF860GJN/, /files/ENCFF479RCH/ 1222803466 Kevin White, UChicago 533b713c29a91450a2efed84bb7205af https://www.encodeproject.org/files/ENCFF661VTP/@@download/ENCFF661VTP.bam released s3://encode-public/2016/12/23/843c7e89-ca2f-4ea9-8095-7fcdab69ecb1/ENCFF661VTP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF995IDJ bigWig bigWig read-depth normalized signal dm3 ENCSR629JCM Control ChIP-seq /fly-donors/ENCDO805XUC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35549/'], '@type': ['Target', 'Item'], 'name': 'CG30431-dmelanogaster', 'label': 'CG30431', '@id': '/targets/CG30431-dmelanogaster/', 'title': 'CG30431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e2e0bae-18b5-4805-bef6-7e888f25c815', 'status': 'released'} dm3 2R 2075044 2096858 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF680ESC/ 15542163 Kevin White, UChicago 496fea27a530325a98760ebec3993f93 https://www.encodeproject.org/files/ENCFF995IDJ/@@download/ENCFF995IDJ.bigWig released s3://encode-public/2017/01/03/6481496b-7ee3-4dc6-baa3-94d26b3149ca/ENCFF995IDJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF075BQR bigWig bigWig signal of unique reads dm3 ENCSR629JCM Control ChIP-seq /fly-donors/ENCDO805XUC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35549/'], '@type': ['Target', 'Item'], 'name': 'CG30431-dmelanogaster', 'label': 'CG30431', '@id': '/targets/CG30431-dmelanogaster/', 'title': 'CG30431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e2e0bae-18b5-4805-bef6-7e888f25c815', 'status': 'released'} dm3 2R 2075044 2096858 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF680ESC/ 15493949 Kevin White, UChicago 9dc1fb744081136eadfa8bd8443ab15f https://www.encodeproject.org/files/ENCFF075BQR/@@download/ENCFF075BQR.bigWig released s3://encode-public/2017/01/03/6047ebf0-a37d-4e0d-9c8f-1c5f0b2a3048/ENCFF075BQR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF477ZOY bigWig bigWig signal of unique reads dm6 ENCSR629JCM Control ChIP-seq /fly-donors/ENCDO805XUC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35549/'], '@type': ['Target', 'Item'], 'name': 'CG30431-dmelanogaster', 'label': 'CG30431', '@id': '/targets/CG30431-dmelanogaster/', 'title': 'CG30431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e2e0bae-18b5-4805-bef6-7e888f25c815', 'status': 'released'} dm3 2R 2075044 2096858 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF661VTP/ 17513507 Kevin White, UChicago 33ee4643f3c5df9814252ea3fb6db1e0 https://www.encodeproject.org/files/ENCFF477ZOY/@@download/ENCFF477ZOY.bigWig released s3://encode-public/2017/01/04/25fd225f-fac7-44c2-ad60-94a8a2daf1ad/ENCFF477ZOY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF908YHT bigWig bigWig read-depth normalized signal dm6 ENCSR629JCM Control ChIP-seq /fly-donors/ENCDO805XUC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35549/'], '@type': ['Target', 'Item'], 'name': 'CG30431-dmelanogaster', 'label': 'CG30431', '@id': '/targets/CG30431-dmelanogaster/', 'title': 'CG30431 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2e2e0bae-18b5-4805-bef6-7e888f25c815', 'status': 'released'} dm3 2R 2075044 2096858 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF661VTP/ 17593316 Kevin White, UChicago 9bb518dd2f01f2900229707547979b6f https://www.encodeproject.org/files/ENCFF908YHT/@@download/ENCFF908YHT.bigWig released s3://encode-public/2017/01/04/378f8c85-9f66-4a74-86cf-6ee836a702de/ENCFF908YHT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF214VKX fastq fastq reads ENCSR996ZXI Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 187024109 Kevin White, UChicago d7eac46e3667d7f9d414acfa90cae6c6 https://www.encodeproject.org/files/ENCFF214VKX/@@download/ENCFF214VKX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF436QPK/ released s3://encode-public/2015/07/30/bfd38877-f5a8-414f-9cd7-7a612992dbbe/ENCFF214VKX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF157KOJ bam bam alignments ce10 ENCSR996ZXI Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF214VKX/ 245628077 Kevin White, UChicago 76f793e4a78d2d39ba4e2b49bb8ddbef https://www.encodeproject.org/files/ENCFF157KOJ/@@download/ENCFF157KOJ.bam released s3://encode-public/2015/08/07/cbc0cf32-ad62-478f-8e22-136a05d85fd8/ENCFF157KOJ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF812DQA bigWig bigWig signal of unique reads ce10 ENCSR996ZXI Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF157KOJ/ 10082759 Kevin White, UChicago 0744873897bac3e118d5c10fe17f8785 https://www.encodeproject.org/files/ENCFF812DQA/@@download/ENCFF812DQA.bigWig released s3://encode-public/2015/09/20/5fbb855a-c560-4c7c-8284-fa4c993bc3ce/ENCFF812DQA.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF998UOP bigWig bigWig read-depth normalized signal ce10 ENCSR996ZXI Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF157KOJ/ 10091132 Kevin White, UChicago bdfce2125f5b364ad189bddb17e86d16 https://www.encodeproject.org/files/ENCFF998UOP/@@download/ENCFF998UOP.bigWig released s3://encode-public/2015/09/20/663f48b1-d25c-4436-8862-f6a1aa18d3db/ENCFF998UOP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF787CGS bam bam alignments ce11 ENCSR996ZXI Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF214VKX/ 245898055 Kevin White, UChicago 705b31597a1ad1c35f33d5824931f972 https://www.encodeproject.org/files/ENCFF787CGS/@@download/ENCFF787CGS.bam released s3://encode-public/2016/01/19/11b3613a-72a4-4d5a-8861-16dab6bdd4ea/ENCFF787CGS.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF592MYE bigWig bigWig signal of unique reads ce11 ENCSR996ZXI Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF787CGS/ 10075985 Kevin White, UChicago 0d60bef8e564b39d8bd1809808eeee9e https://www.encodeproject.org/files/ENCFF592MYE/@@download/ENCFF592MYE.bigWig released s3://encode-public/2016/02/03/c0f16e33-de90-426f-8878-03b92e43362b/ENCFF592MYE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF367VKS bigWig bigWig read-depth normalized signal ce11 ENCSR996ZXI Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF787CGS/ 10089152 Kevin White, UChicago 6b8bab3bbd823f5e6d2c2ff7f1ce0b3b https://www.encodeproject.org/files/ENCFF367VKS/@@download/ENCFF367VKS.bigWig released s3://encode-public/2016/02/03/577a68a7-6eaf-4cc1-bc35-e0845aa281cd/ENCFF367VKS.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF228MSC fastq fastq reads ENCSR143TBI Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 85784199 Kevin White, UChicago db1a1b29d141c25039a5d8df13f37564 https://www.encodeproject.org/files/ENCFF228MSC/@@download/ENCFF228MSC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF967XMR/ released s3://encode-public/2015/07/30/c5488620-e22b-4829-b42f-97b0fe930560/ENCFF228MSC.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization insufficient read depth ENCFF005SAB bam bam alignments ce10 ENCSR143TBI Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF987UMF/, /files/ENCFF228MSC/ 112611108 Kevin White, UChicago b3457342a3264b294679eaeb0e038feb https://www.encodeproject.org/files/ENCFF005SAB/@@download/ENCFF005SAB.bam released s3://encode-public/2015/08/07/8bb63122-8b25-4d96-9e42-6944e700845c/ENCFF005SAB.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization insufficient read depth ENCFF600XGM bigWig bigWig signal of unique reads ce10 ENCSR143TBI Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF005SAB/ 10057158 Kevin White, UChicago 86de03e4191fd67393552061721bf386 https://www.encodeproject.org/files/ENCFF600XGM/@@download/ENCFF600XGM.bigWig released s3://encode-public/2015/10/02/ae0b8edb-a6db-41ee-9082-233b1b19736e/ENCFF600XGM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization insufficient read depth ENCFF112JEW bigWig bigWig read-depth normalized signal ce10 ENCSR143TBI Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF005SAB/ 10083377 Kevin White, UChicago 4a2c1824cee3e51b6d80ac6268089e5a https://www.encodeproject.org/files/ENCFF112JEW/@@download/ENCFF112JEW.bigWig released s3://encode-public/2015/10/02/40d9508d-7e1a-4d98-a96c-8e32ccd98df6/ENCFF112JEW.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization insufficient read depth ENCFF293CSM bam bam alignments ce11 ENCSR143TBI Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF228MSC/ 112742545 Kevin White, UChicago 142f563a6b6cdb00d649a27291134b50 https://www.encodeproject.org/files/ENCFF293CSM/@@download/ENCFF293CSM.bam released s3://encode-public/2016/01/19/f53a1eb2-54b7-4c17-9fa7-d45e667a7a05/ENCFF293CSM.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization insufficient read depth ENCFF170VMD bigWig bigWig signal of unique reads ce11 ENCSR143TBI Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF293CSM/ 10058009 Kevin White, UChicago c0ebdda0cd05d9f9c4d738994bc99c79 https://www.encodeproject.org/files/ENCFF170VMD/@@download/ENCFF170VMD.bigWig released s3://encode-public/2016/02/03/c6c5c2c9-415f-46b8-afb6-7864e456587d/ENCFF170VMD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization insufficient read depth ENCFF474VQY bigWig bigWig read-depth normalized signal ce11 ENCSR143TBI Control ChIP-seq /worm-donors/ENCDO939KVQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191705/'], '@type': ['Target', 'Item'], 'name': 'med-1-celegans', 'label': 'med-1', '@id': '/targets/med-1-celegans/', 'title': 'med-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '86ebcccf-deec-430c-bf7b-4287f199b877', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF293CSM/ 10082071 Kevin White, UChicago dab9876aa0005ddbfde00560e022df26 https://www.encodeproject.org/files/ENCFF474VQY/@@download/ENCFF474VQY.bigWig released s3://encode-public/2016/02/03/3e7f26c2-2d1f-4653-8535-2c343aa7ce2d/ENCFF474VQY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization insufficient read depth ENCFF384CTU fastq fastq reads ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 2 2_1 36 single-ended 815782474 Kevin White, UChicago 1c6ee29078e36ccf3db64a5b159d4279 https://www.encodeproject.org/files/ENCFF384CTU/@@download/ENCFF384CTU.fastq.gz Illumina Genome Analyzer /files/ENCFF475UOY/, /files/ENCFF422BPG/ released s3://encode-public/2017/06/15/5aa36213-428e-4113-ba74-6ee0b100811b/ENCFF384CTU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF262WPN fastq fastq reads ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 782039054 Kevin White, UChicago b98651e99c6461f3530ccd3030704bc2 https://www.encodeproject.org/files/ENCFF262WPN/@@download/ENCFF262WPN.fastq.gz Illumina Genome Analyzer /files/ENCFF475UOY/, /files/ENCFF422BPG/ released s3://encode-public/2017/06/15/19e7e472-34d0-4536-a45d-a4a4e5b450cd/ENCFF262WPN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF126EXP bam bam alignments dm3 ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 36 /files/ENCFF059UHX/, /files/ENCFF262WPN/, /files/ENCFF384CTU/ 1766568673 Kevin White, UChicago a4a527d4a0c526abdef3529247fe96df https://www.encodeproject.org/files/ENCFF126EXP/@@download/ENCFF126EXP.bam released s3://encode-public/2017/06/19/2763640d-cc84-4544-af41-eb559930e508/ENCFF126EXP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF998ILN bam bam alignments dm6 ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 36 /files/ENCFF479RCH/, /files/ENCFF262WPN/, /files/ENCFF384CTU/ 1731778786 Kevin White, UChicago 78066faa9e7f871e41f308aebf8e9a27 https://www.encodeproject.org/files/ENCFF998ILN/@@download/ENCFF998ILN.bam released s3://encode-public/2017/06/28/90ae2437-a77f-4a7b-8adb-fda08f3fb928/ENCFF998ILN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF444VSA bigWig bigWig signal of unique reads dm3 ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF126EXP/ 15590481 Kevin White, UChicago eb37ca7529914be4865aeb5612d9f87b https://www.encodeproject.org/files/ENCFF444VSA/@@download/ENCFF444VSA.bigWig released s3://encode-public/2017/06/29/1cb131fd-f348-4efe-9de8-10ce0fe5de0f/ENCFF444VSA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF732OYO bigWig bigWig read-depth normalized signal dm3 ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF126EXP/ 15597411 Kevin White, UChicago feb9232c56f5b7e64143e17d0aedf1c0 https://www.encodeproject.org/files/ENCFF732OYO/@@download/ENCFF732OYO.bigWig released s3://encode-public/2017/06/29/452888a3-ba1f-4e5c-9932-3b030f966499/ENCFF732OYO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF229ZGP bigWig bigWig signal of unique reads dm6 ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF998ILN/ 17758101 Kevin White, UChicago 635f5d5d2e6787a7c23a48240cdbb666 https://www.encodeproject.org/files/ENCFF229ZGP/@@download/ENCFF229ZGP.bigWig released s3://encode-public/2017/07/03/460b2ae7-6b6e-4045-81aa-91f48f8be0f5/ENCFF229ZGP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF230BLG bigWig bigWig read-depth normalized signal dm6 ENCSR613IXH Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF998ILN/ 17758935 Kevin White, UChicago 73130169eb26f2feda9bc51b1a625903 https://www.encodeproject.org/files/ENCFF230BLG/@@download/ENCFF230BLG.bigWig released s3://encode-public/2017/07/03/fc18f0ca-e793-4ba3-81b6-2e1e31f7604b/ENCFF230BLG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF605JOL fastq fastq reads ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 single-ended 1223228945 Xiang-Dong Fu, UCSD adb29794fd88159795aedafdf4f47f3c SRA:SRR6213693 https://www.encodeproject.org/files/ENCFF605JOL/@@download/ENCFF605JOL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/5af63508-c3d8-454e-86a6-c6786f87eff4/ENCFF605JOL.fastq.gz low read length ENCFF061XKR fastq fastq reads ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 single-ended 1121008524 Xiang-Dong Fu, UCSD d5109b34f46dcd8af22fad0a0b78f688 SRA:SRR6213692 https://www.encodeproject.org/files/ENCFF061XKR/@@download/ENCFF061XKR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/12/9867fc21-0245-49f4-83c0-20a4791462ca/ENCFF061XKR.fastq.gz low read length ENCFF562USM bam bam unfiltered alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF061XKR/ 1609225071 ENCODE Processing Pipeline c72ae2ed446499924b2f4c8e205251b2 https://www.encodeproject.org/files/ENCFF562USM/@@download/ENCFF562USM.bam released s3://encode-public/2017/02/08/368442e8-852b-4df5-a75b-c60503a77252/ENCFF562USM.bam ENCODE3 GRCh38 archived low read length ENCFF462KWM bam bam alignments hg19 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF605JOL/, /files/ENCFF807MUK/ 1321949030 ENCODE Processing Pipeline 3731218eed1326e2526d428c6839d358 https://www.encodeproject.org/files/ENCFF462KWM/@@download/ENCFF462KWM.bam released s3://encode-public/2017/02/08/00f6432e-4a58-4dec-990b-755671cedda3/ENCFF462KWM.bam ENCODE3 hg19 archived low read length ENCFF874GUL bam bam alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF061XKR/ 1218995846 ENCODE Processing Pipeline f6f431797474934d96b227b160e536a4 https://www.encodeproject.org/files/ENCFF874GUL/@@download/ENCFF874GUL.bam released s3://encode-public/2017/02/08/af8b0b2c-8ed3-42ea-a3ad-cf8e037b0383/ENCFF874GUL.bam ENCODE3 GRCh38 archived low read length ENCFF666CEZ bam bam unfiltered alignments hg19 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF061XKR/ 1601866558 ENCODE Processing Pipeline 2640566b4c58f9586ec8cab81e620887 https://www.encodeproject.org/files/ENCFF666CEZ/@@download/ENCFF666CEZ.bam released s3://encode-public/2017/02/08/110fb8e9-86db-42bd-8a6d-6dc6a24cb825/ENCFF666CEZ.bam ENCODE3 hg19 archived low read length ENCFF215VZE bam bam unfiltered alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF605JOL/, /files/ENCFF643CGH/ 1753946495 ENCODE Processing Pipeline 4e0bd9eba72f9d056df5456b9ee55cb4 https://www.encodeproject.org/files/ENCFF215VZE/@@download/ENCFF215VZE.bam released s3://encode-public/2017/02/08/25adea86-73f1-47bf-bea8-6a7ad27b6c59/ENCFF215VZE.bam ENCODE3 GRCh38 archived low read length ENCFF100SSC bam bam alignments hg19 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF061XKR/ 1219876711 ENCODE Processing Pipeline 6fece6ddf556f70cf52f1baa00d93dcb https://www.encodeproject.org/files/ENCFF100SSC/@@download/ENCFF100SSC.bam released s3://encode-public/2017/02/08/753bb52c-15ae-475b-b6bf-ed06140411db/ENCFF100SSC.bam ENCODE3 hg19 archived low read length ENCFF618DZT bam bam unfiltered alignments hg19 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF605JOL/, /files/ENCFF807MUK/ 1745679663 ENCODE Processing Pipeline b382cd5efeba3a58230fe60850cfa487 https://www.encodeproject.org/files/ENCFF618DZT/@@download/ENCFF618DZT.bam released s3://encode-public/2017/02/08/cba1af74-fb12-49f7-a43a-57ec2a07d14b/ENCFF618DZT.bam ENCODE3 hg19 archived low read length ENCFF719EDQ bam bam alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF605JOL/, /files/ENCFF643CGH/ 1321069415 ENCODE Processing Pipeline 6bf720765001573871794ed78bd4c1b4 https://www.encodeproject.org/files/ENCFF719EDQ/@@download/ENCFF719EDQ.bam released s3://encode-public/2017/02/08/a1d40204-4479-4f9f-8f1d-0e75b12eaa4b/ENCFF719EDQ.bam ENCODE3 GRCh38 archived low read length ENCFF723SMW bam bam unfiltered alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF605JOL/, /files/ENCFF110MCL/ 1725392740 ENCODE Processing Pipeline 200e7f2be3814709652706bd33723871 https://www.encodeproject.org/files/ENCFF723SMW/@@download/ENCFF723SMW.bam released s3://encode-public/2020/10/27/b28e1fad-f8e3-4671-be4d-ec50122e22d7/ENCFF723SMW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF262ILU bam bam alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF061XKR/, /files/ENCFF110MCL/ 1260730822 ENCODE Processing Pipeline 195d5b1fa53456c81ec5a571d48b216e https://www.encodeproject.org/files/ENCFF262ILU/@@download/ENCFF262ILU.bam released s3://encode-public/2020/10/27/be2a3cff-b2d0-4b22-89bb-9b6f6f3d12c6/ENCFF262ILU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF704YLI bam bam unfiltered alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF061XKR/, /files/ENCFF110MCL/ 1582703202 ENCODE Processing Pipeline 5b8a28be1ef580c0a8c96f8d776dc789 https://www.encodeproject.org/files/ENCFF704YLI/@@download/ENCFF704YLI.bam released s3://encode-public/2020/10/27/c550f975-a978-4a41-87a5-8ec06db10b05/ENCFF704YLI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF123DCH bam bam alignments GRCh38 ENCSR545RWZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF605JOL/, /files/ENCFF110MCL/ 1370650669 ENCODE Processing Pipeline aea368d80b6bee4a8c41e2c03fd4eb2e https://www.encodeproject.org/files/ENCFF123DCH/@@download/ENCFF123DCH.bam released s3://encode-public/2020/10/27/9a978d38-25fe-4175-9f8d-9e321ed3d7a3/ENCFF123DCH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF320GMX fastq fastq reads ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF493QSZ/ 3111208855 Michael Snyder, Stanford ff8abd9aea5596ec3a456c3097d6cccb SRA:SRR6213490 https://www.encodeproject.org/files/ENCFF320GMX/@@download/ENCFF320GMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/9273e3b0-d65f-4a46-9b41-0cb9867ed6d1/ENCFF320GMX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF493QSZ fastq fastq reads ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF320GMX/ 3715570042 Michael Snyder, Stanford dea195272820fb4cfd89c7dac275c7aa SRA:SRR6213490 https://www.encodeproject.org/files/ENCFF493QSZ/@@download/ENCFF493QSZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/432214d6-aef7-4fe6-a9ca-2c005db2c3ce/ENCFF493QSZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF419VCC bam bam unfiltered alignments GRCh38 ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF493QSZ/, /files/ENCFF643CGH/, /files/ENCFF320GMX/ 6198042194 ENCODE Processing Pipeline 3404924e1012172de3f520afcb0fa695 https://www.encodeproject.org/files/ENCFF419VCC/@@download/ENCFF419VCC.bam released s3://encode-public/2017/03/23/e7920eee-2716-4003-8671-f028fea862c2/ENCFF419VCC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF519MHP bam bam unfiltered alignments hg19 ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF493QSZ/, /files/ENCFF807MUK/, /files/ENCFF320GMX/ 6196067628 ENCODE Processing Pipeline 58a27745b059e56ada422c614c8986a1 https://www.encodeproject.org/files/ENCFF519MHP/@@download/ENCFF519MHP.bam released s3://encode-public/2017/03/23/3d9d9fef-949e-4743-a215-1228ef0392d2/ENCFF519MHP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF340ZEP bam bam alignments hg19 ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF493QSZ/, /files/ENCFF807MUK/, /files/ENCFF320GMX/ 3989140967 ENCODE Processing Pipeline 3cdd8f9a762578dc636e943a1f322baf https://www.encodeproject.org/files/ENCFF340ZEP/@@download/ENCFF340ZEP.bam released s3://encode-public/2017/03/23/d0e6b87b-3566-4639-bbc5-7229c322fa85/ENCFF340ZEP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF679CSN bam bam alignments GRCh38 ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF493QSZ/, /files/ENCFF643CGH/, /files/ENCFF320GMX/ 3994263184 ENCODE Processing Pipeline 8d9d3d83411b0dcf7731b07217e01eea https://www.encodeproject.org/files/ENCFF679CSN/@@download/ENCFF679CSN.bam released s3://encode-public/2017/03/23/8ce05e79-8679-45ad-b9c7-2941750f6b89/ENCFF679CSN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF173SCX bam bam unfiltered alignments GRCh38 ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF320GMX/, /files/ENCFF493QSZ/ 6208654783 ENCODE Processing Pipeline 64f134eeadccab8bf6382668d16c9abe https://www.encodeproject.org/files/ENCFF173SCX/@@download/ENCFF173SCX.bam released s3://encode-public/2020/06/02/4e9a2b72-b15c-471a-8d1c-fa1361d94e1d/ENCFF173SCX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF093RLC bam bam alignments GRCh38 ENCSR510GIX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF320GMX/, /files/ENCFF493QSZ/ 3901448325 ENCODE Processing Pipeline 00a12bb5059a57cf065afe6da65d212b https://www.encodeproject.org/files/ENCFF093RLC/@@download/ENCFF093RLC.bam released s3://encode-public/2020/06/02/373698d5-d0ae-48e1-8c39-16d960a548ed/ENCFF093RLC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF736ADI fastq fastq reads ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF060AIJ/ 2748133217 Michael Snyder, Stanford 33ada549fbfe8a52d35b8801ca7f6696 SRA:SRR6213603 https://www.encodeproject.org/files/ENCFF736ADI/@@download/ENCFF736ADI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/f87ca1d0-b02e-45b4-9ffe-08e5d1b06962/ENCFF736ADI.fastq.gz ENCFF060AIJ fastq fastq reads ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF736ADI/ 2321275409 Michael Snyder, Stanford 921f4140e2da50c87c6412efee838351 SRA:SRR6213603 https://www.encodeproject.org/files/ENCFF060AIJ/@@download/ENCFF060AIJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/b855cade-7d25-4d01-ba18-ab12ba3edddb/ENCFF060AIJ.fastq.gz ENCFF341OIA bam bam unfiltered alignments hg19 ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF060AIJ/, /files/ENCFF807MUK/, /files/ENCFF736ADI/ 5085021999 ENCODE Processing Pipeline 411e52b58a701b5226bcd2cf505694e5 https://www.encodeproject.org/files/ENCFF341OIA/@@download/ENCFF341OIA.bam released s3://encode-public/2016/12/07/516caa6e-b156-4b29-b92c-cb9895bac2b8/ENCFF341OIA.bam ENCODE3 hg19 archived ENCFF760XJH bam bam unfiltered alignments GRCh38 ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF060AIJ/, /files/ENCFF643CGH/, /files/ENCFF736ADI/ 5096150273 ENCODE Processing Pipeline 23c6554e29b90ff16287506a9483314a https://www.encodeproject.org/files/ENCFF760XJH/@@download/ENCFF760XJH.bam released s3://encode-public/2016/12/07/5a051b1c-eeea-42de-b21c-d69a10308994/ENCFF760XJH.bam ENCODE3 GRCh38 archived ENCFF735LIV bam bam alignments hg19 ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF060AIJ/, /files/ENCFF807MUK/, /files/ENCFF736ADI/ 4089204922 ENCODE Processing Pipeline 1c7feb9bbf051126a523c86eb7f4931c https://www.encodeproject.org/files/ENCFF735LIV/@@download/ENCFF735LIV.bam released s3://encode-public/2016/12/07/879953b2-1e0c-4452-b80d-0cfe9b22aa55/ENCFF735LIV.bam ENCODE3 hg19 archived ENCFF129ZFR bam bam alignments GRCh38 ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF060AIJ/, /files/ENCFF643CGH/, /files/ENCFF736ADI/ 4093802857 ENCODE Processing Pipeline 48e7496c2f10a24653a51a6c5ad6e713 https://www.encodeproject.org/files/ENCFF129ZFR/@@download/ENCFF129ZFR.bam released s3://encode-public/2016/12/07/5d242963-b195-401b-a157-59c28535b011/ENCFF129ZFR.bam ENCODE3 GRCh38 archived ENCFF460UGA bam bam unfiltered alignments GRCh38 ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF060AIJ/, /files/ENCFF736ADI/ 5094537207 ENCODE Processing Pipeline c4ea2d05c4649e305bde8f619638566c https://www.encodeproject.org/files/ENCFF460UGA/@@download/ENCFF460UGA.bam released s3://encode-public/2020/06/02/983ee647-a995-4d22-a51c-da3d96ce35bf/ENCFF460UGA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF765XIM bam bam alignments GRCh38 ENCSR396WMW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF060AIJ/, /files/ENCFF736ADI/ 4072494656 ENCODE Processing Pipeline 595624223ffafda7eff04f7fd591ae88 https://www.encodeproject.org/files/ENCFF765XIM/@@download/ENCFF765XIM.bam released s3://encode-public/2020/06/02/b45ade2e-eb8d-45dd-a285-4b3177fad1a4/ENCFF765XIM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF989XLL fastq fastq reads ENCSR257AYE Control ChIP-seq /fly-donors/ENCDO301HEW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33583/'], '@type': ['Target', 'Item'], 'name': 'odd-dmelanogaster', 'label': 'odd', '@id': '/targets/odd-dmelanogaster/', 'title': 'odd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3d33556-eddf-4e47-aca3-cd2698feaad7', 'status': 'released'} dm3 2L 3556188 3644308 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1366702742 Kevin White, UChicago eaa0ff7e4c92ca0cbb71459102d4b878 https://www.encodeproject.org/files/ENCFF989XLL/@@download/ENCFF989XLL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/511f5110-69dd-4b63-a83a-be54ddbe9c6a/ENCFF989XLL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF303JEX bam bam alignments dm3 ENCSR257AYE Control ChIP-seq /fly-donors/ENCDO301HEW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33583/'], '@type': ['Target', 'Item'], 'name': 'odd-dmelanogaster', 'label': 'odd', '@id': '/targets/odd-dmelanogaster/', 'title': 'odd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3d33556-eddf-4e47-aca3-cd2698feaad7', 'status': 'released'} dm3 2L 3556188 3644308 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF989XLL/, /files/ENCFF059UHX/ 1843684779 Kevin White, UChicago 616f17f783fc0d29a0ae7e796fd02352 https://www.encodeproject.org/files/ENCFF303JEX/@@download/ENCFF303JEX.bam released s3://encode-public/2016/12/22/2a301db5-5177-4946-af0d-df8013359538/ENCFF303JEX.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF643RVQ bam bam alignments dm6 ENCSR257AYE Control ChIP-seq /fly-donors/ENCDO301HEW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33583/'], '@type': ['Target', 'Item'], 'name': 'odd-dmelanogaster', 'label': 'odd', '@id': '/targets/odd-dmelanogaster/', 'title': 'odd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3d33556-eddf-4e47-aca3-cd2698feaad7', 'status': 'released'} dm3 2L 3556188 3644308 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF989XLL/, /files/ENCFF479RCH/ 1817731955 Kevin White, UChicago ac33f776fe8604dd5b24efceaac3c018 https://www.encodeproject.org/files/ENCFF643RVQ/@@download/ENCFF643RVQ.bam released s3://encode-public/2016/12/22/bc1282d3-2baf-48a3-bc38-12f802687b9d/ENCFF643RVQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF329PDC bigWig bigWig signal of unique reads dm3 ENCSR257AYE Control ChIP-seq /fly-donors/ENCDO301HEW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33583/'], '@type': ['Target', 'Item'], 'name': 'odd-dmelanogaster', 'label': 'odd', '@id': '/targets/odd-dmelanogaster/', 'title': 'odd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3d33556-eddf-4e47-aca3-cd2698feaad7', 'status': 'released'} dm3 2L 3556188 3644308 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF303JEX/ 15514437 Kevin White, UChicago b1a6258cea40a95a77ad109440ff536c https://www.encodeproject.org/files/ENCFF329PDC/@@download/ENCFF329PDC.bigWig released s3://encode-public/2017/01/03/b3fc318c-b676-4b81-834c-b9b5eede17fc/ENCFF329PDC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF342ZNQ bigWig bigWig read-depth normalized signal dm3 ENCSR257AYE Control ChIP-seq /fly-donors/ENCDO301HEW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33583/'], '@type': ['Target', 'Item'], 'name': 'odd-dmelanogaster', 'label': 'odd', '@id': '/targets/odd-dmelanogaster/', 'title': 'odd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3d33556-eddf-4e47-aca3-cd2698feaad7', 'status': 'released'} dm3 2L 3556188 3644308 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF303JEX/ 15481155 Kevin White, UChicago 4216f5d980ced65074618a7bf15da58d https://www.encodeproject.org/files/ENCFF342ZNQ/@@download/ENCFF342ZNQ.bigWig released s3://encode-public/2017/01/03/a586ca92-8730-4a7f-945e-89d97a6ef688/ENCFF342ZNQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF086THR bigWig bigWig read-depth normalized signal dm6 ENCSR257AYE Control ChIP-seq /fly-donors/ENCDO301HEW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33583/'], '@type': ['Target', 'Item'], 'name': 'odd-dmelanogaster', 'label': 'odd', '@id': '/targets/odd-dmelanogaster/', 'title': 'odd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3d33556-eddf-4e47-aca3-cd2698feaad7', 'status': 'released'} dm3 2L 3556188 3644308 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF643RVQ/ 17548868 Kevin White, UChicago e1add07813d2acdc2e2c7c45488fc7cc https://www.encodeproject.org/files/ENCFF086THR/@@download/ENCFF086THR.bigWig released s3://encode-public/2017/01/04/387f8115-0df3-4ae0-b21b-cf498e59bb06/ENCFF086THR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF505SSC bigWig bigWig signal of unique reads dm6 ENCSR257AYE Control ChIP-seq /fly-donors/ENCDO301HEW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33583/'], '@type': ['Target', 'Item'], 'name': 'odd-dmelanogaster', 'label': 'odd', '@id': '/targets/odd-dmelanogaster/', 'title': 'odd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3d33556-eddf-4e47-aca3-cd2698feaad7', 'status': 'released'} dm3 2L 3556188 3644308 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF643RVQ/ 17607800 Kevin White, UChicago 9ad1c6185c088ea4d7de1f3aad96763d https://www.encodeproject.org/files/ENCFF505SSC/@@download/ENCFF505SSC.bigWig released s3://encode-public/2017/01/04/79c233b3-58d8-416e-85ee-c8c15690fd69/ENCFF505SSC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF333ZJW fastq fastq reads ENCSR328QIR Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1556625730 Kevin White, UChicago f3d18ebef2b749d81eeb51a0b024d3a0 https://www.encodeproject.org/files/ENCFF333ZJW/@@download/ENCFF333ZJW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/23/1e4e7171-13e4-45b4-87fe-b8812b86e2db/ENCFF333ZJW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF287ASZ bam bam alignments dm3 ENCSR328QIR Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF333ZJW/ 1902648747 Kevin White, UChicago 0435afeec25862f71a5d695ac3d0cf1a https://www.encodeproject.org/files/ENCFF287ASZ/@@download/ENCFF287ASZ.bam released s3://encode-public/2017/06/20/23e16474-7259-4197-8978-46528090e38a/ENCFF287ASZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF714CWP bam bam alignments dm6 ENCSR328QIR Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF333ZJW/ 1897418590 Kevin White, UChicago 3f079bd815e422cf25028a3d4b94ef36 https://www.encodeproject.org/files/ENCFF714CWP/@@download/ENCFF714CWP.bam released s3://encode-public/2017/06/28/abb7ed50-84c7-4f35-a692-4197a6cf797a/ENCFF714CWP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF731JLQ bigWig bigWig signal of unique reads dm3 ENCSR328QIR Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF287ASZ/ 15544871 Kevin White, UChicago 57ce1a93f59f02a9aa8a103008f5f325 https://www.encodeproject.org/files/ENCFF731JLQ/@@download/ENCFF731JLQ.bigWig released s3://encode-public/2017/06/29/716f0145-c472-4bb5-9b1c-e8a05d03a4ff/ENCFF731JLQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF805KOH bigWig bigWig read-depth normalized signal dm3 ENCSR328QIR Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF287ASZ/ 15595028 Kevin White, UChicago 9ae84d25e26adc0b33a45b3c28d412d9 https://www.encodeproject.org/files/ENCFF805KOH/@@download/ENCFF805KOH.bigWig released s3://encode-public/2017/06/29/3dd57b3c-b05a-4cbb-aca4-7bd366ab0a72/ENCFF805KOH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF518KBV bigWig bigWig read-depth normalized signal dm6 ENCSR328QIR Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF714CWP/ 17771126 Kevin White, UChicago 59b7240e2b4ad6071c8a1e9b13fc5726 https://www.encodeproject.org/files/ENCFF518KBV/@@download/ENCFF518KBV.bigWig released s3://encode-public/2017/06/30/156db941-fc8e-46f0-a4b1-95c1084a450b/ENCFF518KBV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF777DMH bigWig bigWig signal of unique reads dm6 ENCSR328QIR Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF714CWP/ 17695228 Kevin White, UChicago e01cb2b552b7834548e3a90f0b1f9b21 https://www.encodeproject.org/files/ENCFF777DMH/@@download/ENCFF777DMH.bigWig released s3://encode-public/2017/06/30/e9f04fb0-e271-4a67-9f9e-7c719fc5ef6f/ENCFF777DMH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF308BNL fastq fastq reads ENCSR288VBD Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 single-ended 315324987 Kevin White, UChicago 54e6009233a533f0bf85b5bff1944119 https://www.encodeproject.org/files/ENCFF308BNL/@@download/ENCFF308BNL.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/12/22/1ea43a2b-6e69-4307-82a1-f63f3cd77e5c/ENCFF308BNL.fastq.gz ENCFF491SKT bam bam alignments dm3 ENCSR288VBD Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF308BNL/, /files/ENCFF059UHX/ 333970652 Kevin White, UChicago 55079d6a425f0dac9bcece8fb4b2e563 https://www.encodeproject.org/files/ENCFF491SKT/@@download/ENCFF491SKT.bam released s3://encode-public/2017/12/22/a017fdb6-bdec-46c7-8ee3-c813e2498cf0/ENCFF491SKT.bam Lab custom dm3 archived ENCFF933AUZ bam bam alignments dm6 ENCSR288VBD Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF308BNL/, /files/ENCFF479RCH/ 329341977 Kevin White, UChicago e891cc325c10137fdc2771bbc2bfcb82 https://www.encodeproject.org/files/ENCFF933AUZ/@@download/ENCFF933AUZ.bam released s3://encode-public/2017/12/24/6c643d11-16d8-4e4d-919b-ec4f2ccd0d23/ENCFF933AUZ.bam Lab custom dm6 released ENCFF504RHI bigWig bigWig signal of unique reads dm3 ENCSR288VBD Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF491SKT/ 15199808 Kevin White, UChicago 8f0504f37389a1ce37cd4d5aac8e1f09 https://www.encodeproject.org/files/ENCFF504RHI/@@download/ENCFF504RHI.bigWig released s3://encode-public/2017/12/24/1b56c58e-4474-43f7-a5b2-c63a2b03e291/ENCFF504RHI.bigWig Lab custom dm3 archived ENCFF708GJI bigWig bigWig read-depth normalized signal dm3 ENCSR288VBD Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF491SKT/ 15179610 Kevin White, UChicago 9fa6ee09b33e794040c36d88b632978a https://www.encodeproject.org/files/ENCFF708GJI/@@download/ENCFF708GJI.bigWig released s3://encode-public/2017/12/24/fcaac2b1-27e3-44a9-8079-eaf92fdf4ce2/ENCFF708GJI.bigWig Lab custom dm3 archived ENCFF469EXJ bigWig bigWig read-depth normalized signal dm6 ENCSR288VBD Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF933AUZ/ 17348642 Kevin White, UChicago 94d642e422bad4764687b507519a32b0 https://www.encodeproject.org/files/ENCFF469EXJ/@@download/ENCFF469EXJ.bigWig released s3://encode-public/2017/12/24/d0e113d6-9416-431f-bb16-55a3809e1b94/ENCFF469EXJ.bigWig Lab custom dm6 released ENCFF558MMJ bigWig bigWig signal of unique reads dm6 ENCSR288VBD Control ChIP-seq /fly-donors/ENCDO995VAO/ EFO:0005836 S2 cell line Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF933AUZ/ 17387911 Kevin White, UChicago b77083ba1472c7d090f91325c34c68b1 https://www.encodeproject.org/files/ENCFF558MMJ/@@download/ENCFF558MMJ.bigWig released s3://encode-public/2017/12/24/808e7883-d443-4225-a924-6a3c99202460/ENCFF558MMJ.bigWig Lab custom dm6 released ENCFF182DKW fastq fastq reads ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 1003536086 Zhiping Weng, UMass 0c6810089802fc29ef10eb71f1e282e4 SRA:SRR1045835 https://www.encodeproject.org/files/ENCFF182DKW/@@download/ENCFF182DKW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/fdbf181c-1eb4-4ab7-84aa-358d70287a40/ENCFF182DKW.fastq.gz mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF073EYI bam bam alignments hg19 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF182DKW/ 325849559 ENCODE Processing Pipeline 4c32e911b1864d5d7e21bb9730e3a585 https://www.encodeproject.org/files/ENCFF073EYI/@@download/ENCFF073EYI.bam released s3://encode-public/2017/03/16/bbc673ee-8b8d-4d5d-9e01-eb4cefdad624/ENCFF073EYI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF800DFI bam bam unfiltered alignments hg19 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF182DKW/ 869670492 ENCODE Processing Pipeline 06432f2bfeba8d148c3ed977e2198e89 https://www.encodeproject.org/files/ENCFF800DFI/@@download/ENCFF800DFI.bam released s3://encode-public/2017/03/16/27ef4739-a78f-41f2-ab13-7e56db8c7462/ENCFF800DFI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF400FPE bam bam unfiltered alignments GRCh38 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF182DKW/ 874641500 ENCODE Processing Pipeline 962c98d444cc3adcc3e295f7923695e7 https://www.encodeproject.org/files/ENCFF400FPE/@@download/ENCFF400FPE.bam released s3://encode-public/2017/03/16/fa248166-8621-4a88-84af-befe9389e5ca/ENCFF400FPE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF259EKT bam bam alignments GRCh38 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF182DKW/ 325701091 ENCODE Processing Pipeline 77e6a5173c5a8cab060b92b3aa3373e4 https://www.encodeproject.org/files/ENCFF259EKT/@@download/ENCFF259EKT.bam released s3://encode-public/2017/03/16/eceb2b8d-2a5a-47bf-a737-a025b57785b9/ENCFF259EKT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF156MAY bam bam unfiltered alignments GRCh38 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF182DKW/ 1050432298 ENCODE Processing Pipeline bd935c474b67369844fd09e5f109c7b7 https://www.encodeproject.org/files/ENCFF156MAY/@@download/ENCFF156MAY.bam released s3://encode-public/2020/08/06/83ecc80d-f1f2-42a7-b416-8ba215ee374c/ENCFF156MAY.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF612PWG bam bam alignments GRCh38 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF182DKW/ 474827381 ENCODE Processing Pipeline 3218cd526f94b219721cfc89bb37157c https://www.encodeproject.org/files/ENCFF612PWG/@@download/ENCFF612PWG.bam released s3://encode-public/2020/08/06/590976a6-49cf-4e82-91f8-e4244b3278c0/ENCFF612PWG.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF281NAM bam bam unfiltered alignments GRCh38 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF182DKW/ 852039256 ENCODE Processing Pipeline 365a91db863bb7898234b1957c19eb22 https://www.encodeproject.org/files/ENCFF281NAM/@@download/ENCFF281NAM.bam released s3://encode-public/2020/08/13/9a78fcf7-34c7-4e9c-be46-21fd0cf7d6fd/ENCFF281NAM.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF676YQB bam bam alignments GRCh38 ENCSR652ZLE Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF182DKW/ 363441435 ENCODE Processing Pipeline e536057b39ec42223b2655a9cffafa09 https://www.encodeproject.org/files/ENCFF676YQB/@@download/ENCFF676YQB.bam released s3://encode-public/2020/08/13/3e20f2bb-fe5b-4162-a936-376bb16a1f68/ENCFF676YQB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF146TGU fastq fastq reads ENCSR279OHT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF180UUB/ 2378466405 Michael Snyder, Stanford 0afcfe1d5264c18a7486222934c7ad34 SRA:SRR14104109 https://www.encodeproject.org/files/ENCFF146TGU/@@download/ENCFF146TGU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/e445f85a-1be7-4d61-a5cc-3feba6756444/ENCFF146TGU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF180UUB fastq fastq reads ENCSR279OHT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF146TGU/ 2613262351 Michael Snyder, Stanford 5cbd0c9e19736ba594e0e76e0ff1d778 SRA:SRR14104109 https://www.encodeproject.org/files/ENCFF180UUB/@@download/ENCFF180UUB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/5dc9f29f-05ac-424f-a23b-d8a474732877/ENCFF180UUB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF490HSR bam bam unfiltered alignments GRCh38 ENCSR279OHT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF146TGU/, /files/ENCFF180UUB/ 4603023430 ENCODE Processing Pipeline f636325a18d49c023144af8fff8ce453 https://www.encodeproject.org/files/ENCFF490HSR/@@download/ENCFF490HSR.bam released s3://encode-public/2020/04/21/01d26477-c097-40b2-9315-c95175c87731/ENCFF490HSR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF958KOF bam bam alignments GRCh38 ENCSR279OHT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF146TGU/, /files/ENCFF180UUB/ 2669220187 ENCODE Processing Pipeline caa31d0201dca6898f3bee2efe35d50b https://www.encodeproject.org/files/ENCFF958KOF/@@download/ENCFF958KOF.bam released s3://encode-public/2020/04/21/59eb7a54-2df3-40c3-bec5-3ac46fccc60d/ENCFF958KOF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF638SON fastq fastq reads ENCSR650UPJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 1007808417 Kevin White, UChicago 8b92f5d6c3f794b8dd83f07741b14bae https://www.encodeproject.org/files/ENCFF638SON/@@download/ENCFF638SON.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/22/236b7ad1-a072-4c0c-ae76-5127a35592db/ENCFF638SON.fastq.gz ENCFF778ODE bam bam alignments dm3 ENCSR650UPJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF638SON/ 1259637805 Kevin White, UChicago 92b6751b2435f8ccf0d96c28cc21bd64 https://www.encodeproject.org/files/ENCFF778ODE/@@download/ENCFF778ODE.bam released s3://encode-public/2017/06/19/5c5ec0ca-618c-410a-a9a6-19ea8629c732/ENCFF778ODE.bam Lab custom dm3 archived ENCFF464UPV bam bam alignments dm6 ENCSR650UPJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF638SON/ 1257368842 Kevin White, UChicago 0232f63e3a1e69f2609ac46e2a27765e https://www.encodeproject.org/files/ENCFF464UPV/@@download/ENCFF464UPV.bam released s3://encode-public/2017/06/29/84152cab-628d-4b12-82b0-0ee379d7dc08/ENCFF464UPV.bam Lab custom dm6 released ENCFF915FDE bigWig bigWig signal of unique reads dm3 ENCSR650UPJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF778ODE/ 15596790 Kevin White, UChicago 1b0abe8eb8103a2bf5a876ad79c417db https://www.encodeproject.org/files/ENCFF915FDE/@@download/ENCFF915FDE.bigWig released s3://encode-public/2017/06/29/ba61ca22-c18c-4973-8fb1-52f25e605bb7/ENCFF915FDE.bigWig Lab custom dm3 archived ENCFF621GNO bigWig bigWig read-depth normalized signal dm3 ENCSR650UPJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF778ODE/ 15615652 Kevin White, UChicago 0a5d2c93fd38eea7d02f638ddaa93fd0 https://www.encodeproject.org/files/ENCFF621GNO/@@download/ENCFF621GNO.bigWig released s3://encode-public/2017/06/29/905181bb-b6a0-46cb-ac8e-490cc35881c4/ENCFF621GNO.bigWig Lab custom dm3 archived ENCFF548SNM bigWig bigWig read-depth normalized signal dm6 ENCSR650UPJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF464UPV/ 17755125 Kevin White, UChicago fd73f08d7634174680ed484841b21bd0 https://www.encodeproject.org/files/ENCFF548SNM/@@download/ENCFF548SNM.bigWig released s3://encode-public/2017/06/30/8f53e1bc-8142-4286-9e10-430a6e223714/ENCFF548SNM.bigWig Lab custom dm6 released ENCFF650IEX bigWig bigWig signal of unique reads dm6 ENCSR650UPJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF464UPV/ 17718679 Kevin White, UChicago 999ecfbc82c3fa4fc2a13c58aa441f95 https://www.encodeproject.org/files/ENCFF650IEX/@@download/ENCFF650IEX.bigWig released s3://encode-public/2017/06/30/19e88e0f-37f8-446b-b9c5-1b3ed6f3bc68/ENCFF650IEX.bigWig Lab custom dm6 released ENCFF411LIU bam bam unfiltered alignments hg19 ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF340RXU/, /files/ENCFF698OMK/ 7026679554 ENCODE Processing Pipeline 008bb14541b006302b6e2dde6be355f6 https://www.encodeproject.org/files/ENCFF411LIU/@@download/ENCFF411LIU.bam released s3://encode-public/2018/02/21/6b02a4de-f939-4e0c-8d88-609c93b2f17f/ENCFF411LIU.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF698OMK fastq fastq reads ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF340RXU/ 3246537153 Michael Snyder, Stanford 4ce96625cffdb4d25f438b08737fe7b3 SRA:SRR5111195 https://www.encodeproject.org/files/ENCFF698OMK/@@download/ENCFF698OMK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/b8082834-ca82-40e2-8ffc-c1bea9f4fc30/ENCFF698OMK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF340RXU fastq fastq reads ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF698OMK/ 3281130905 Michael Snyder, Stanford 1a2356aaea36526a45edb8ede239e591 SRA:SRR5111195 https://www.encodeproject.org/files/ENCFF340RXU/@@download/ENCFF340RXU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/b0a5f381-746b-4c8c-b069-524aacc40696/ENCFF340RXU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF774NMX bam bam alignments hg19 ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF340RXU/, /files/ENCFF698OMK/ 6077131848 ENCODE Processing Pipeline e196dd9b9330bf0ee7b030daf0007c75 https://www.encodeproject.org/files/ENCFF774NMX/@@download/ENCFF774NMX.bam released s3://encode-public/2015/12/09/731f4f54-65f5-4763-a71a-151c9b4c86f1/ENCFF774NMX.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF078QXI bam bam unfiltered alignments GRCh38 ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF340RXU/, /files/ENCFF698OMK/ 7040021446 ENCODE Processing Pipeline cc1ac664bbb0781abf754eca19ce6ddd https://www.encodeproject.org/files/ENCFF078QXI/@@download/ENCFF078QXI.bam released s3://encode-public/2016/05/06/34523224-c128-4aba-a708-2aa4ef785ead/ENCFF078QXI.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF780MVW bam bam alignments GRCh38 ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF340RXU/, /files/ENCFF698OMK/ 6083230218 ENCODE Processing Pipeline 504dd309b37e74ec7d91f28f11721dd4 https://www.encodeproject.org/files/ENCFF780MVW/@@download/ENCFF780MVW.bam released s3://encode-public/2016/05/06/398a9fc7-e5e6-47b8-94bb-c2e3a4999371/ENCFF780MVW.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF797FCG bam bam unfiltered alignments GRCh38 ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF340RXU/, /files/ENCFF698OMK/ 6942498648 ENCODE Processing Pipeline 1edfac682eedf5601e3a1251f5ccf235 https://www.encodeproject.org/files/ENCFF797FCG/@@download/ENCFF797FCG.bam released s3://encode-public/2020/06/13/600131a2-1b6a-49cd-81e1-8997d144393c/ENCFF797FCG.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF425VAT bam bam alignments GRCh38 ENCSR097PLG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/466/'], '@type': ['Target', 'Item'], 'name': 'ATF1-human', 'label': 'ATF1', '@id': '/targets/ATF1-human/', 'title': 'ATF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '57a814e4-7bfb-4832-84c3-ab2d1047c4d1', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF340RXU/, /files/ENCFF698OMK/ 5746292108 ENCODE Processing Pipeline 5b175ed74215c4ac85c305d022aadf0a https://www.encodeproject.org/files/ENCFF425VAT/@@download/ENCFF425VAT.bam released s3://encode-public/2020/06/13/84e4c65c-d64b-4850-bb07-7cbc241a8207/ENCFF425VAT.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF545CWO bam bam unfiltered alignments hg19 ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF928HTI/, /files/ENCFF807MUK/, /files/ENCFF931LWJ/ 7094085221 ENCODE Processing Pipeline c23b4aa2d9f4abf84b9146afa8203983 https://www.encodeproject.org/files/ENCFF545CWO/@@download/ENCFF545CWO.bam released s3://encode-public/2018/02/21/78485dad-c782-4e3d-a25e-c8f0ccc5a6ea/ENCFF545CWO.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF931LWJ fastq fastq reads ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF928HTI/ 3176285175 Michael Snyder, Stanford 7f18e4b89c5d533d2327eb3cf22bd59b SRA:SRR5111501 https://www.encodeproject.org/files/ENCFF931LWJ/@@download/ENCFF931LWJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/e5ed966c-f87b-4853-8df8-e85223cd8b15/ENCFF931LWJ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF928HTI fastq fastq reads ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF931LWJ/ 3376515582 Michael Snyder, Stanford 29a9ee024d4320f9943a3534be9f01de SRA:SRR5111501 https://www.encodeproject.org/files/ENCFF928HTI/@@download/ENCFF928HTI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/c2210271-0321-4e3c-b43a-8e48241be21f/ENCFF928HTI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF304EUO bam bam alignments hg19 ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF928HTI/, /files/ENCFF807MUK/, /files/ENCFF931LWJ/ 5940673364 ENCODE Processing Pipeline 6a1463d5c9e01d8dd68941e0fe27347a https://www.encodeproject.org/files/ENCFF304EUO/@@download/ENCFF304EUO.bam released s3://encode-public/2015/12/09/b26ff086-5109-4407-9643-f7cecbdc7be9/ENCFF304EUO.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF181XUO bam bam unfiltered alignments GRCh38 ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF928HTI/, /files/ENCFF643CGH/, /files/ENCFF931LWJ/ 7105639668 ENCODE Processing Pipeline 1f6127cc124e152efa0240ff08620783 https://www.encodeproject.org/files/ENCFF181XUO/@@download/ENCFF181XUO.bam released s3://encode-public/2016/05/06/a45f225b-1bee-4970-a38c-31e357466231/ENCFF181XUO.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF266FHE bam bam alignments GRCh38 ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF928HTI/, /files/ENCFF643CGH/, /files/ENCFF931LWJ/ 5947843645 ENCODE Processing Pipeline 02569468ec1cab75db38be50bc4aaffc https://www.encodeproject.org/files/ENCFF266FHE/@@download/ENCFF266FHE.bam released s3://encode-public/2016/05/06/a65ca60f-8590-43b8-9d73-69e438ed0b93/ENCFF266FHE.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF846UCH bam bam unfiltered alignments GRCh38 ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF928HTI/, /files/ENCFF110MCL/, /files/ENCFF931LWJ/ 7070628274 ENCODE Processing Pipeline 252c7b98810f154fda4e358f4114d5ee https://www.encodeproject.org/files/ENCFF846UCH/@@download/ENCFF846UCH.bam released s3://encode-public/2020/06/13/a0245c9a-ed69-43ae-8ba7-bd7383005d04/ENCFF846UCH.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF126UYQ bam bam alignments GRCh38 ENCSR369LPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284119/'], '@type': ['Target', 'Item'], 'name': 'PTRF-human', 'label': 'PTRF', '@id': '/targets/PTRF-human/', 'title': 'PTRF (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '543f4547-907c-4628-9946-099314f4d95e', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF928HTI/, /files/ENCFF110MCL/, /files/ENCFF931LWJ/ 5831258404 ENCODE Processing Pipeline 827f78ceef14b7c250932667d7475cf5 https://www.encodeproject.org/files/ENCFF126UYQ/@@download/ENCFF126UYQ.bam released s3://encode-public/2020/06/13/fc1387c7-486a-4d2b-a72a-6b4c7083ae17/ENCFF126UYQ.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF072EKO fastq fastq reads ENCSR815BDB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2062537605 Zhiping Weng, UMass 0471bacc3a56d24c47e23c972dd8fb30 SRA:SRR445381 https://www.encodeproject.org/files/ENCFF072EKO/@@download/ENCFF072EKO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/71be23cd-3de4-4aa5-bd1c-33318d9148e3/ENCFF072EKO.fastq.gz low read length ENCFF917EPK bam bam unfiltered alignments GRCh38 ENCSR815BDB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF072EKO/ 2462097628 ENCODE Processing Pipeline 3d27ddd42c22baf75a7f4ba2ba96ec38 https://www.encodeproject.org/files/ENCFF917EPK/@@download/ENCFF917EPK.bam released s3://encode-public/2020/10/08/d4505338-3126-4690-a63d-f2e58b05c370/ENCFF917EPK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF498CHW bam bam unfiltered alignments GRCh38 ENCSR815BDB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF072EKO/, /files/ENCFF643CGH/ 2534125997 ENCODE Processing Pipeline 387091777ca614d324e6bd75fd844c61 https://www.encodeproject.org/files/ENCFF498CHW/@@download/ENCFF498CHW.bam released s3://encode-public/2016/12/19/743320d2-1d5e-4fb3-8e9a-76d7c3344201/ENCFF498CHW.bam ENCODE3 GRCh38 archived low read length ENCFF511RWY bam bam unfiltered alignments hg19 ENCSR815BDB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF072EKO/, /files/ENCFF807MUK/ 2517942611 ENCODE Processing Pipeline 3ceceaba404a7b663dc11022bf3fcf0d https://www.encodeproject.org/files/ENCFF511RWY/@@download/ENCFF511RWY.bam released s3://encode-public/2016/12/19/b39b9290-c3c9-4ff0-9a47-0877b35fcd11/ENCFF511RWY.bam ENCODE3 hg19 archived low read length ENCFF507TCG bam bam alignments hg19 ENCSR815BDB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF072EKO/, /files/ENCFF807MUK/ 1471202832 ENCODE Processing Pipeline 8729cb140c9e4e27573b1d2b8fa3ca68 https://www.encodeproject.org/files/ENCFF507TCG/@@download/ENCFF507TCG.bam released s3://encode-public/2016/12/19/ec3c27c9-1004-400c-80fe-280069e42984/ENCFF507TCG.bam ENCODE3 hg19 archived low read length ENCFF237BVB bam bam alignments GRCh38 ENCSR815BDB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF072EKO/, /files/ENCFF643CGH/ 1470940055 ENCODE Processing Pipeline a2237aeee64e6a60762356799de64090 https://www.encodeproject.org/files/ENCFF237BVB/@@download/ENCFF237BVB.bam released s3://encode-public/2016/12/19/12a9ce4b-5132-427d-96ea-9a5974bce41d/ENCFF237BVB.bam ENCODE3 GRCh38 archived low read length ENCFF874DMD bam bam alignments GRCh38 ENCSR815BDB Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF072EKO/ 1630184627 ENCODE Processing Pipeline ad1858b9b31603ff95bc12254e55ae81 https://www.encodeproject.org/files/ENCFF874DMD/@@download/ENCFF874DMD.bam released s3://encode-public/2020/10/08/df68312d-a7c6-4113-87ed-e3e5898bca86/ENCFF874DMD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF744ZJK fastq fastq reads ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1425211586 Xiang-Dong Fu, UCSD f6da2a799ef26bace236921a1ba72918 SRA:SRR14107386 https://www.encodeproject.org/files/ENCFF744ZJK/@@download/ENCFF744ZJK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/2f759e86-e5a2-4076-84ca-3945efaf3914/ENCFF744ZJK.fastq.gz low read length ENCFF513NDA fastq fastq reads ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 1295775020 Xiang-Dong Fu, UCSD 5549e5db59ee3c9a9ccddc01e2d5bb14 SRA:SRR14107385 https://www.encodeproject.org/files/ENCFF513NDA/@@download/ENCFF513NDA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/754f510a-de73-4e2f-ba10-a0b5a57a04e6/ENCFF513NDA.fastq.gz low read length ENCFF457CIV bam bam alignments hg19 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF744ZJK/, /files/ENCFF807MUK/ 1537936009 ENCODE Processing Pipeline f09f83fe5bbfae0201e46aadf4a32918 https://www.encodeproject.org/files/ENCFF457CIV/@@download/ENCFF457CIV.bam released s3://encode-public/2016/02/26/fc66282f-566a-4961-9218-26ef3b2594d7/ENCFF457CIV.bam ENCODE3 hg19 archived low read length ENCFF529GUX bam bam alignments hg19 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF513NDA/ 1419996073 ENCODE Processing Pipeline 0d0ef832dc319f6c2a588cdc71acb8c9 https://www.encodeproject.org/files/ENCFF529GUX/@@download/ENCFF529GUX.bam released s3://encode-public/2016/02/26/280969bb-34ce-4b79-9324-c81a6827b801/ENCFF529GUX.bam ENCODE3 hg19 archived low read length ENCFF965IQY bam bam unfiltered alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF513NDA/ 1901701848 ENCODE Processing Pipeline 19191d81d8901cd9ae620e47f7a71825 https://www.encodeproject.org/files/ENCFF965IQY/@@download/ENCFF965IQY.bam released s3://encode-public/2016/05/06/c5eff373-488b-4e57-a0bc-9ea8444e2820/ENCFF965IQY.bam ENCODE3 GRCh38 archived low read length ENCFF732PHN bam bam unfiltered alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF744ZJK/, /files/ENCFF643CGH/ 2081070801 ENCODE Processing Pipeline 4ee87045e15c9623dbbf48b9f30d6310 https://www.encodeproject.org/files/ENCFF732PHN/@@download/ENCFF732PHN.bam released s3://encode-public/2016/05/06/5484e13b-0fbb-4212-a0e8-2d80c36bee55/ENCFF732PHN.bam ENCODE3 GRCh38 archived low read length ENCFF554LOM bam bam alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF513NDA/ 1418796899 ENCODE Processing Pipeline 979473db7b964efcc74920b0679cefc4 https://www.encodeproject.org/files/ENCFF554LOM/@@download/ENCFF554LOM.bam released s3://encode-public/2016/05/06/72aaead0-6fcf-4c45-adda-59c12732224d/ENCFF554LOM.bam ENCODE3 GRCh38 archived low read length ENCFF926NUN bam bam alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF744ZJK/, /files/ENCFF643CGH/ 1536727391 ENCODE Processing Pipeline 5a489f51059ae7a2c65b927789acd615 https://www.encodeproject.org/files/ENCFF926NUN/@@download/ENCFF926NUN.bam released s3://encode-public/2016/05/06/a5332c31-5e7b-416d-8151-8a5d90481a60/ENCFF926NUN.bam ENCODE3 GRCh38 archived low read length ENCFF476OPN bam bam unfiltered alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF513NDA/ 1873108631 ENCODE Processing Pipeline eaef451a7820548bdf91e3a45a693add https://www.encodeproject.org/files/ENCFF476OPN/@@download/ENCFF476OPN.bam released s3://encode-public/2020/10/27/a9d5bb9b-71ff-477d-aa3f-21bea24d7193/ENCFF476OPN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF770YBL bam bam unfiltered alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF744ZJK/ 2049693131 ENCODE Processing Pipeline e917ebd8f0830ec277cd592767d1947a https://www.encodeproject.org/files/ENCFF770YBL/@@download/ENCFF770YBL.bam released s3://encode-public/2020/10/27/df0fbc94-189e-4860-aca5-8e0bb5207c95/ENCFF770YBL.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF505JDM bam bam alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF513NDA/ 1474492267 ENCODE Processing Pipeline ef73edbe7a1f8cffeff3b5d2a91e45d8 https://www.encodeproject.org/files/ENCFF505JDM/@@download/ENCFF505JDM.bam released s3://encode-public/2020/10/27/66590e17-6906-449f-a2a8-41938c089b3c/ENCFF505JDM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF337NDC bam bam alignments GRCh38 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF744ZJK/ 1598390442 ENCODE Processing Pipeline c2d5c64ff37ca287f76c6158aecda9ab https://www.encodeproject.org/files/ENCFF337NDC/@@download/ENCFF337NDC.bam released s3://encode-public/2020/10/27/abc60f97-c1cd-42ad-bb61-617df7958e1e/ENCFF337NDC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF574CMH bam bam unfiltered alignments hg19 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF513NDA/ 1893668029 ENCODE Processing Pipeline 5ef7df7cc8cd1c29e3c35839c04f50f3 https://www.encodeproject.org/files/ENCFF574CMH/@@download/ENCFF574CMH.bam released s3://encode-public/2018/01/12/6c5d566c-e3ff-47fb-a306-c6d0d5731880/ENCFF574CMH.bam ENCODE3 hg19 archived low read length ENCFF648SCX bam bam unfiltered alignments hg19 ENCSR397ZZR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF744ZJK/, /files/ENCFF807MUK/ 2071494017 ENCODE Processing Pipeline fd66ceca42525b0710106af74824cddb https://www.encodeproject.org/files/ENCFF648SCX/@@download/ENCFF648SCX.bam released s3://encode-public/2018/01/12/01061ec0-5c4f-4d9f-b89f-d989eb520bd6/ENCFF648SCX.bam ENCODE3 hg19 archived low read length ENCFF380OJQ bam bam unfiltered alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF182GXC/, /files/ENCFF110MCL/ 677282718 ENCODE Processing Pipeline 07136d27b6cf860bca92e10d090e922a https://www.encodeproject.org/files/ENCFF380OJQ/@@download/ENCFF380OJQ.bam released s3://encode-public/2020/09/29/6e44a779-a700-43e2-8a2e-110f31149bff/ENCFF380OJQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF974WSH bam bam unfiltered alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF886LFW/ 783860049 ENCODE Processing Pipeline 362bdbc6735851127934f8e1d077380f https://www.encodeproject.org/files/ENCFF974WSH/@@download/ENCFF974WSH.bam released s3://encode-public/2020/09/29/b87f6ed4-05b7-41f8-b862-91d679c76c8e/ENCFF974WSH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF665IXV bam bam alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF861ALF/, /files/ENCFF110MCL/ 714255299 ENCODE Processing Pipeline 0dccc53b99d9019cb170dc1905c0d0dc https://www.encodeproject.org/files/ENCFF665IXV/@@download/ENCFF665IXV.bam released s3://encode-public/2020/09/29/0d148c48-1d2a-46f4-80fe-51a9e03955ef/ENCFF665IXV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF861ALF fastq fastq reads ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 618662670 Tim Reddy, Duke 659fdc2c2a3757395186bb724f3c0a74 SRA:SRR5092984 https://www.encodeproject.org/files/ENCFF861ALF/@@download/ENCFF861ALF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/ffdf8d40-3b6f-434b-8a4d-d17992c6b5ca/ENCFF861ALF.fastq.gz ENCFF182GXC fastq fastq reads ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 501462128 Tim Reddy, Duke 9ed018a4030019e9a3a537d133ac2418 SRA:SRR5092982 https://www.encodeproject.org/files/ENCFF182GXC/@@download/ENCFF182GXC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/8920dc93-2b65-464c-b316-7fee1620287d/ENCFF182GXC.fastq.gz ENCFF886LFW fastq fastq reads ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 572091914 Tim Reddy, Duke bda8c226a21eb1e082d91d920d9ed22d SRA:SRR5092983 https://www.encodeproject.org/files/ENCFF886LFW/@@download/ENCFF886LFW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/1b155afd-2bc4-4f15-950b-e49b294143b4/ENCFF886LFW.fastq.gz ENCFF353MMY bam bam alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF886LFW/ 625748059 Tim Reddy, Duke 24b24093450f80db779ca7d375dd7376 https://www.encodeproject.org/files/ENCFF353MMY/@@download/ENCFF353MMY.bam released s3://encode-public/2016/05/31/f600c4c0-ad30-4bf0-8972-e473dfe2aada/ENCFF353MMY.bam Lab custom GRCh38 archived ENCFF429DLV bam bam alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF861ALF/ 681764702 Tim Reddy, Duke 79d3279c4548c1e563e99bea3b06dd8b https://www.encodeproject.org/files/ENCFF429DLV/@@download/ENCFF429DLV.bam released s3://encode-public/2016/05/31/60d7d30b-6cc2-4cb4-88a3-f6f679c8f51b/ENCFF429DLV.bam Lab custom GRCh38 archived ENCFF540VMP bam bam alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF182GXC/ 550354344 Tim Reddy, Duke 825bcf80ef4d59ab301f70e383888261 https://www.encodeproject.org/files/ENCFF540VMP/@@download/ENCFF540VMP.bam released s3://encode-public/2016/05/31/0cd2e741-d876-463f-88c8-e79a070e69be/ENCFF540VMP.bam Lab custom GRCh38 archived ENCFF096JRY bam bam alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF886LFW/ 656490681 ENCODE Processing Pipeline 7272aa19fec6202d30c4caa46c3cb8df https://www.encodeproject.org/files/ENCFF096JRY/@@download/ENCFF096JRY.bam released s3://encode-public/2020/09/29/1f416be0-2d2f-4f98-b619-6432107149a9/ENCFF096JRY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF986PVH bam bam alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF182GXC/, /files/ENCFF110MCL/ 574307264 ENCODE Processing Pipeline 7004db0790d3217d7a647c3e23b092d7 https://www.encodeproject.org/files/ENCFF986PVH/@@download/ENCFF986PVH.bam released s3://encode-public/2020/09/29/be862a8e-03d3-4520-9d37-8a5b8ab16769/ENCFF986PVH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF299OYD bam bam unfiltered alignments GRCh38 ENCSR548SPY Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF861ALF/, /files/ENCFF110MCL/ 841509206 ENCODE Processing Pipeline 58997e6472381e4d33221d1f7fb776c4 https://www.encodeproject.org/files/ENCFF299OYD/@@download/ENCFF299OYD.bam released s3://encode-public/2020/09/29/e8ca11ec-620a-4577-9111-f84b2a6e77f7/ENCFF299OYD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF533WNO bam bam unfiltered alignments hg19 ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF564OXD/, /files/ENCFF807MUK/, /files/ENCFF422MHT/ 1383096692 ENCODE Processing Pipeline f15fcc2dd45431e1932be1f5484e31a4 https://www.encodeproject.org/files/ENCFF533WNO/@@download/ENCFF533WNO.bam released s3://encode-public/2018/02/22/9950e2ef-055c-4d51-b851-05ae032d5bcc/ENCFF533WNO.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF422MHT fastq fastq reads ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 438700455 Kevin White, UChicago 73068f7c68ce75a4a8d28ceb22cbf049 SRA:SRR6213630 https://www.encodeproject.org/files/ENCFF422MHT/@@download/ENCFF422MHT.fastq.gz Illumina HiSeq 2500 /files/ENCFF500SYJ/, /files/ENCFF459OWK/ released s3://encode-public/2016/03/14/88a01351-8d23-45b2-a839-78c83924d768/ENCFF422MHT.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF564OXD fastq fastq reads ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 824787072 Kevin White, UChicago 87d47131775938fc9154de10a133b532 SRA:SRR6213631 https://www.encodeproject.org/files/ENCFF564OXD/@@download/ENCFF564OXD.fastq.gz Illumina HiSeq 2000 /files/ENCFF067NSO/, /files/ENCFF679NOJ/ released s3://encode-public/2016/03/22/b6956526-fbd3-4a32-a2da-fdd0dcc64592/ENCFF564OXD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF891YJS bam bam alignments hg19 ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF564OXD/, /files/ENCFF807MUK/, /files/ENCFF422MHT/ 1067389202 ENCODE Processing Pipeline 63361fb217da372bdbde20ea0f063542 https://www.encodeproject.org/files/ENCFF891YJS/@@download/ENCFF891YJS.bam released s3://encode-public/2016/04/23/9a660da7-59ae-45d9-84eb-bfab98e44c8e/ENCFF891YJS.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF312KEY bam bam unfiltered alignments GRCh38 ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF564OXD/, /files/ENCFF643CGH/, /files/ENCFF422MHT/ 1387653662 ENCODE Processing Pipeline e7e9145abb8d077d58646d8af1d31ab3 https://www.encodeproject.org/files/ENCFF312KEY/@@download/ENCFF312KEY.bam released s3://encode-public/2016/05/06/d5b0a678-27ec-400b-9719-1f1c14925795/ENCFF312KEY.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF383YOE bam bam alignments GRCh38 ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF564OXD/, /files/ENCFF643CGH/, /files/ENCFF422MHT/ 1066873108 ENCODE Processing Pipeline 877c139240482f72de0702a3c1b26a67 https://www.encodeproject.org/files/ENCFF383YOE/@@download/ENCFF383YOE.bam released s3://encode-public/2016/05/06/7c51fba8-6227-44a6-b062-a65ae7a10717/ENCFF383YOE.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF458KGB bam bam alignments GRCh38 ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF422MHT/, /files/ENCFF564OXD/, /files/ENCFF110MCL/ 1113612177 ENCODE Processing Pipeline ca9067725eda02c5dde7a6acca7e0964 https://www.encodeproject.org/files/ENCFF458KGB/@@download/ENCFF458KGB.bam released s3://encode-public/2020/10/27/3630286a-4cc4-4d84-a485-84c30d07e7ab/ENCFF458KGB.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF729GYD bam bam unfiltered alignments GRCh38 ENCSR675JUK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1997/'], '@type': ['Target', 'Item'], 'label': 'ELF1', 'title': 'ELF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '40057629-9f8d-4812-ac11-7bcb4df4374d', 'schema_version': '14', 'name': 'ELF1-human', '@id': '/targets/ELF1-human/', 'status': 'released'} hg19 13 41451804 41654738 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF422MHT/, /files/ENCFF564OXD/, /files/ENCFF110MCL/ 1389118342 ENCODE Processing Pipeline b204829873730c5934a86baa1766275c https://www.encodeproject.org/files/ENCFF729GYD/@@download/ENCFF729GYD.bam released s3://encode-public/2020/10/27/2d3e20b5-9564-4a5c-8d85-8a5a75988539/ENCFF729GYD.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF824HSJ fastq fastq reads ENCSR552ODH Control ChIP-seq /fly-donors/ENCDO503WBC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39539/'], '@type': ['Target', 'Item'], 'name': 'Meics-dmelanogaster', 'label': 'Meics', '@id': '/targets/Meics-dmelanogaster/', 'title': 'Meics (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'daf032a3-a703-4fbf-87a9-a3e07faf9ded', 'status': 'released'} dm3 3L 13946985 13967333 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 675639844 Kevin White, UChicago ea7a69f774ff89fbef317ac855038cd6 https://www.encodeproject.org/files/ENCFF824HSJ/@@download/ENCFF824HSJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/e5aa3d5d-d3c5-49ec-a34e-58c491333f52/ENCFF824HSJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF282AFZ bam bam alignments dm3 ENCSR552ODH Control ChIP-seq /fly-donors/ENCDO503WBC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39539/'], '@type': ['Target', 'Item'], 'name': 'Meics-dmelanogaster', 'label': 'Meics', '@id': '/targets/Meics-dmelanogaster/', 'title': 'Meics (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'daf032a3-a703-4fbf-87a9-a3e07faf9ded', 'status': 'released'} dm3 3L 13946985 13967333 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF824HSJ/, /files/ENCFF059UHX/ 915209281 Kevin White, UChicago 8b1a1d5d1365248cf1fdc9afade6fd9e https://www.encodeproject.org/files/ENCFF282AFZ/@@download/ENCFF282AFZ.bam released s3://encode-public/2016/12/22/67f52112-f312-4060-822e-3220521de3ac/ENCFF282AFZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF073HGK bam bam alignments dm6 ENCSR552ODH Control ChIP-seq /fly-donors/ENCDO503WBC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39539/'], '@type': ['Target', 'Item'], 'name': 'Meics-dmelanogaster', 'label': 'Meics', '@id': '/targets/Meics-dmelanogaster/', 'title': 'Meics (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'daf032a3-a703-4fbf-87a9-a3e07faf9ded', 'status': 'released'} dm3 3L 13946985 13967333 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF824HSJ/, /files/ENCFF479RCH/ 905468282 Kevin White, UChicago bf9537cc1be0d6bb1610beddab434c65 https://www.encodeproject.org/files/ENCFF073HGK/@@download/ENCFF073HGK.bam released s3://encode-public/2016/12/22/417a39b6-6c4c-42c2-9dc8-d8870ac09dee/ENCFF073HGK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF823DKQ bigWig bigWig signal of unique reads dm3 ENCSR552ODH Control ChIP-seq /fly-donors/ENCDO503WBC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39539/'], '@type': ['Target', 'Item'], 'name': 'Meics-dmelanogaster', 'label': 'Meics', '@id': '/targets/Meics-dmelanogaster/', 'title': 'Meics (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'daf032a3-a703-4fbf-87a9-a3e07faf9ded', 'status': 'released'} dm3 3L 13946985 13967333 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF282AFZ/ 15268603 Kevin White, UChicago 18fc6d86b8a815f9fb88e1caf1f88785 https://www.encodeproject.org/files/ENCFF823DKQ/@@download/ENCFF823DKQ.bigWig released s3://encode-public/2017/01/03/2dfc8bee-0bc7-4162-8161-c3b67abe3d91/ENCFF823DKQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF518WFI bigWig bigWig read-depth normalized signal dm3 ENCSR552ODH Control ChIP-seq /fly-donors/ENCDO503WBC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39539/'], '@type': ['Target', 'Item'], 'name': 'Meics-dmelanogaster', 'label': 'Meics', '@id': '/targets/Meics-dmelanogaster/', 'title': 'Meics (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'daf032a3-a703-4fbf-87a9-a3e07faf9ded', 'status': 'released'} dm3 3L 13946985 13967333 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF282AFZ/ 15263677 Kevin White, UChicago a95dd698ac66db171518946a8cd05a4d https://www.encodeproject.org/files/ENCFF518WFI/@@download/ENCFF518WFI.bigWig released s3://encode-public/2017/01/03/5ca9cca3-d890-4686-9332-28baee061cfa/ENCFF518WFI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF806RPU bigWig bigWig signal of unique reads dm6 ENCSR552ODH Control ChIP-seq /fly-donors/ENCDO503WBC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39539/'], '@type': ['Target', 'Item'], 'name': 'Meics-dmelanogaster', 'label': 'Meics', '@id': '/targets/Meics-dmelanogaster/', 'title': 'Meics (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'daf032a3-a703-4fbf-87a9-a3e07faf9ded', 'status': 'released'} dm3 3L 13946985 13967333 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF073HGK/ 17367922 Kevin White, UChicago 191dc15d9938a540e4bfba89ce98586c https://www.encodeproject.org/files/ENCFF806RPU/@@download/ENCFF806RPU.bigWig released s3://encode-public/2017/01/04/ccf5d4fe-159d-48f2-9eeb-3853cf223612/ENCFF806RPU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF275YMK bigWig bigWig read-depth normalized signal dm6 ENCSR552ODH Control ChIP-seq /fly-donors/ENCDO503WBC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39539/'], '@type': ['Target', 'Item'], 'name': 'Meics-dmelanogaster', 'label': 'Meics', '@id': '/targets/Meics-dmelanogaster/', 'title': 'Meics (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'daf032a3-a703-4fbf-87a9-a3e07faf9ded', 'status': 'released'} dm3 3L 13946985 13967333 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF073HGK/ 17374055 Kevin White, UChicago 95ffc060526687382671252ee01ee19d https://www.encodeproject.org/files/ENCFF275YMK/@@download/ENCFF275YMK.bigWig released s3://encode-public/2017/01/04/acf2c45c-8414-47fb-950b-c4218c5beec3/ENCFF275YMK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF279CHC fastq fastq reads ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1079221088 Bradley Bernstein, Broad c665b1266598aa642d67bd734c646d12 SRA:SRR5338767 https://www.encodeproject.org/files/ENCFF279CHC/@@download/ENCFF279CHC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/7310d657-e165-4239-bbe2-93eec40e1ba9/ENCFF279CHC.fastq.gz ENCFF433FBI fastq fastq reads ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1083011294 Bradley Bernstein, Broad 8b70831673412a2bd0891a7430d9f12f SRA:SRR5338768 https://www.encodeproject.org/files/ENCFF433FBI/@@download/ENCFF433FBI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/46478a5a-68cc-4bcb-803a-d450656c70c6/ENCFF433FBI.fastq.gz ENCFF614GOP fastq fastq reads ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1357920450 Bradley Bernstein, Broad 007ac29b362b22eccda71ae48ffefe4e SRA:SRR5338769 https://www.encodeproject.org/files/ENCFF614GOP/@@download/ENCFF614GOP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/eb4d6461-1bd7-4023-8864-cc2d1063c1ad/ENCFF614GOP.fastq.gz ENCFF583LPM fastq fastq reads ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 single-ended 1328764392 Bradley Bernstein, Broad 085cd9a8cbe331017b33dd9c204092ee SRA:SRR5338770 https://www.encodeproject.org/files/ENCFF583LPM/@@download/ENCFF583LPM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/b6150104-3ed0-4f6a-857e-42402b6fa243/ENCFF583LPM.fastq.gz ENCFF890LQX bam bam unfiltered alignments GRCh38 ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF433FBI/, /files/ENCFF614GOP/, /files/ENCFF583LPM/, /files/ENCFF643CGH/, /files/ENCFF279CHC/ 4565900373 ENCODE Processing Pipeline 6b870e769ae4955e25365fce39e3a56c https://www.encodeproject.org/files/ENCFF890LQX/@@download/ENCFF890LQX.bam released s3://encode-public/2016/10/27/13b595c9-b272-4deb-bf72-987a16be10fb/ENCFF890LQX.bam ENCODE3 GRCh38 archived ENCFF405TOH bam bam unfiltered alignments hg19 ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF433FBI/, /files/ENCFF614GOP/, /files/ENCFF807MUK/, /files/ENCFF583LPM/, /files/ENCFF279CHC/ 4552432483 ENCODE Processing Pipeline 54926ddbbbbeef11ea3db20b6182d92a https://www.encodeproject.org/files/ENCFF405TOH/@@download/ENCFF405TOH.bam released s3://encode-public/2016/10/27/2de274f3-a9ca-4540-bce3-2e75ac30b77c/ENCFF405TOH.bam ENCODE3 hg19 archived ENCFF144FKQ bam bam alignments GRCh38 ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF433FBI/, /files/ENCFF614GOP/, /files/ENCFF583LPM/, /files/ENCFF643CGH/, /files/ENCFF279CHC/ 3756197289 ENCODE Processing Pipeline d4bbdbb27bb528ad16c0c474f508cdef https://www.encodeproject.org/files/ENCFF144FKQ/@@download/ENCFF144FKQ.bam released s3://encode-public/2016/10/27/0bd36323-806d-42d7-8168-40136667afb7/ENCFF144FKQ.bam ENCODE3 GRCh38 archived ENCFF823ZQX bam bam alignments hg19 ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF433FBI/, /files/ENCFF614GOP/, /files/ENCFF807MUK/, /files/ENCFF583LPM/, /files/ENCFF279CHC/ 3750819988 ENCODE Processing Pipeline fb0f83bf324623c02287574859928b2b https://www.encodeproject.org/files/ENCFF823ZQX/@@download/ENCFF823ZQX.bam released s3://encode-public/2016/10/27/af22749f-c2e9-4d39-8e57-2d102c9c4223/ENCFF823ZQX.bam ENCODE3 hg19 archived ENCFF680TBH bam bam alignments GRCh38 ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF614GOP/, /files/ENCFF433FBI/, /files/ENCFF583LPM/, /files/ENCFF279CHC/, /files/ENCFF110MCL/ 3839657603 ENCODE Processing Pipeline 57708720b87dd38a4b5265f05ca92866 https://www.encodeproject.org/files/ENCFF680TBH/@@download/ENCFF680TBH.bam released s3://encode-public/2020/08/20/c4ddba50-3fb6-48ae-bfc3-c3944bb02fad/ENCFF680TBH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF871YIU bam bam unfiltered alignments GRCh38 ENCSR474WLZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF614GOP/, /files/ENCFF433FBI/, /files/ENCFF583LPM/, /files/ENCFF279CHC/, /files/ENCFF110MCL/ 4628823176 ENCODE Processing Pipeline ed18fa4c6388b81963f0cda45dedbda9 https://www.encodeproject.org/files/ENCFF871YIU/@@download/ENCFF871YIU.bam released s3://encode-public/2020/08/20/57a21ce9-4732-4b31-b8f4-82ece47f1fc5/ENCFF871YIU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF276QOR fastq fastq reads ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF665FNP/ 4127881539 Michael Snyder, Stanford 4086d1f4c3937df5711c532cc651d0b0 SRA:SRR5111538 https://www.encodeproject.org/files/ENCFF276QOR/@@download/ENCFF276QOR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/02/0f54a5ae-52a3-4a62-af99-af070d74b639/ENCFF276QOR.fastq.gz mild to moderate bottlenecking ENCFF665FNP fastq fastq reads ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF276QOR/ 3905944143 Michael Snyder, Stanford 52261371b28c1c071a686b8f1a813c75 SRA:SRR5111538 https://www.encodeproject.org/files/ENCFF665FNP/@@download/ENCFF665FNP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/02/85423e05-b7d1-4b65-954c-ecb8582e8e45/ENCFF665FNP.fastq.gz mild to moderate bottlenecking ENCFF758XDM fastq fastq reads ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF777BTD/ 5223073076 Michael Snyder, Stanford 7b41d5f3f888e7de3004d65def0459ed SRA:SRR5111537 https://www.encodeproject.org/files/ENCFF758XDM/@@download/ENCFF758XDM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/02/3e48e19f-b33d-4601-a123-1e5c4a9bb1e3/ENCFF758XDM.fastq.gz mild to moderate bottlenecking ENCFF777BTD fastq fastq reads ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF758XDM/ 4955697634 Michael Snyder, Stanford 876c129be096e3d5916643e6efe1cd89 SRA:SRR5111537 https://www.encodeproject.org/files/ENCFF777BTD/@@download/ENCFF777BTD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/02/f12a4833-2ba5-4663-973f-c4274d31a04a/ENCFF777BTD.fastq.gz mild to moderate bottlenecking ENCFF895VLA bam bam unfiltered alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF276QOR/, /files/ENCFF665FNP/, /files/ENCFF643CGH/ 7766391398 ENCODE Processing Pipeline edef8550cddc17ef1e92db9fb0d888b5 https://www.encodeproject.org/files/ENCFF895VLA/@@download/ENCFF895VLA.bam released s3://encode-public/2016/09/16/e8492eb6-0cc8-42e2-8a25-71fcad6a2b31/ENCFF895VLA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF394ADH bam bam unfiltered alignments hg19 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF276QOR/, /files/ENCFF807MUK/, /files/ENCFF665FNP/ 7750277781 ENCODE Processing Pipeline 927543edbcf35778094b9ecde5c5b756 https://www.encodeproject.org/files/ENCFF394ADH/@@download/ENCFF394ADH.bam released s3://encode-public/2016/09/16/c1f1856d-74c6-4876-b424-640dba3b87d0/ENCFF394ADH.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF580CDY bam bam unfiltered alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF758XDM/, /files/ENCFF777BTD/ 9613664579 ENCODE Processing Pipeline 30efdd4264d41a61b6eaecfcff981fd4 https://www.encodeproject.org/files/ENCFF580CDY/@@download/ENCFF580CDY.bam released s3://encode-public/2016/09/16/46bfcf6e-f97e-41ce-889c-7283ebb6bc6a/ENCFF580CDY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF313BTS bam bam unfiltered alignments hg19 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF758XDM/, /files/ENCFF777BTD/ 9600463995 ENCODE Processing Pipeline 967329274558b8abe29c6e0f2846a5ec https://www.encodeproject.org/files/ENCFF313BTS/@@download/ENCFF313BTS.bam released s3://encode-public/2016/09/16/41df09df-20bb-4313-bf20-a566c9c2fc1d/ENCFF313BTS.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF172XZA bam bam alignments hg19 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF276QOR/, /files/ENCFF807MUK/, /files/ENCFF665FNP/ 5733384348 ENCODE Processing Pipeline 8ec8d53b3f844d1bcd818aa9ebd9b563 https://www.encodeproject.org/files/ENCFF172XZA/@@download/ENCFF172XZA.bam released s3://encode-public/2016/09/16/f85aaa83-3c3c-4b93-8c93-5d01554ffed7/ENCFF172XZA.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF475DWJ bam bam alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF276QOR/, /files/ENCFF665FNP/, /files/ENCFF643CGH/ 5751057166 ENCODE Processing Pipeline 1cf8430fcdfc16c1f1614adbc898bf80 https://www.encodeproject.org/files/ENCFF475DWJ/@@download/ENCFF475DWJ.bam released s3://encode-public/2016/09/16/a962c227-4e6d-4a57-a255-1c38a868ed9f/ENCFF475DWJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF621RXC bam bam alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF758XDM/, /files/ENCFF777BTD/ 7057627862 ENCODE Processing Pipeline 5f8ae21bf23414a09ed049f4bbffebb6 https://www.encodeproject.org/files/ENCFF621RXC/@@download/ENCFF621RXC.bam released s3://encode-public/2016/09/16/0ec14714-05a6-47e4-97d6-e455c20556b2/ENCFF621RXC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF843IXX bam bam alignments hg19 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF758XDM/, /files/ENCFF777BTD/ 7036979811 ENCODE Processing Pipeline a366bdb4fa70088ebd9f4fef055f8b4a https://www.encodeproject.org/files/ENCFF843IXX/@@download/ENCFF843IXX.bam released s3://encode-public/2016/09/16/a6259e36-4409-4fb2-a191-055256fb405f/ENCFF843IXX.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF829XTH bam bam unfiltered alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF777BTD/, /files/ENCFF758XDM/ 9632343435 ENCODE Processing Pipeline 8679259716ae92aa042455d7865ef7e3 https://www.encodeproject.org/files/ENCFF829XTH/@@download/ENCFF829XTH.bam released s3://encode-public/2020/06/02/4c6eca40-e1fb-4b5f-8946-7ffecf280a1a/ENCFF829XTH.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF739ODI bam bam unfiltered alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF665FNP/, /files/ENCFF276QOR/ 7783943884 ENCODE Processing Pipeline 37506f925c43ec05e7581314d393cf96 https://www.encodeproject.org/files/ENCFF739ODI/@@download/ENCFF739ODI.bam released s3://encode-public/2020/06/02/2e789666-3b8e-4bc7-be25-b4c0ee121dbb/ENCFF739ODI.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF058VRY bam bam alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF777BTD/, /files/ENCFF758XDM/ 6972243680 ENCODE Processing Pipeline 36b49026b3586b850ef63377b02b6968 https://www.encodeproject.org/files/ENCFF058VRY/@@download/ENCFF058VRY.bam released s3://encode-public/2020/06/02/6b886496-1567-480c-b6a0-c7b3b7a0196f/ENCFF058VRY.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF665KHZ bam bam alignments GRCh38 ENCSR399VVK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF665FNP/, /files/ENCFF276QOR/ 5696444843 ENCODE Processing Pipeline 32781bc4fd2f1aa64a6924b08697e477 https://www.encodeproject.org/files/ENCFF665KHZ/@@download/ENCFF665KHZ.bam released s3://encode-public/2020/06/02/c84cc6d1-5d92-410d-b72c-190f652ccd5c/ENCFF665KHZ.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF873BKD fastq fastq reads ENCSR950GKT Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1512511078 Kevin White, UChicago e363882e0f841397622002cf275f5d4f https://www.encodeproject.org/files/ENCFF873BKD/@@download/ENCFF873BKD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/24/97c475ef-0690-4da8-8a30-b15230752e21/ENCFF873BKD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF779SYJ bam bam alignments dm3 ENCSR950GKT Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF873BKD/ 1880081013 Kevin White, UChicago d7de3eb7a462824d07d48ee850159fea https://www.encodeproject.org/files/ENCFF779SYJ/@@download/ENCFF779SYJ.bam released s3://encode-public/2017/06/20/82119c6f-a24e-4cc4-96ec-c1048bad7658/ENCFF779SYJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF902NNI bam bam alignments dm6 ENCSR950GKT Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF873BKD/ 1877495032 Kevin White, UChicago a4741e1d84ebe291cfb09ec654e5fd1f https://www.encodeproject.org/files/ENCFF902NNI/@@download/ENCFF902NNI.bam released s3://encode-public/2017/06/28/23551b7c-2bed-475e-bcd0-cd5547864c28/ENCFF902NNI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF366HRI bigWig bigWig signal of unique reads dm3 ENCSR950GKT Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF779SYJ/ 15661087 Kevin White, UChicago 90a2abbd97f8e0d6c9ece18fc205713a https://www.encodeproject.org/files/ENCFF366HRI/@@download/ENCFF366HRI.bigWig released s3://encode-public/2017/06/29/f6961c01-5bba-4fe5-88ac-142f649be2fe/ENCFF366HRI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF862RWO bigWig bigWig read-depth normalized signal dm3 ENCSR950GKT Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF779SYJ/ 15671379 Kevin White, UChicago 60f20a8dff9ae8347249ec023f5473a2 https://www.encodeproject.org/files/ENCFF862RWO/@@download/ENCFF862RWO.bigWig released s3://encode-public/2017/06/29/9598e82c-e327-488e-a357-f822d15092d2/ENCFF862RWO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF443XCO bigWig bigWig read-depth normalized signal dm6 ENCSR950GKT Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF902NNI/ 17790644 Kevin White, UChicago af9d5a471ed28730b734fd1854bf1d92 https://www.encodeproject.org/files/ENCFF443XCO/@@download/ENCFF443XCO.bigWig released s3://encode-public/2017/06/30/3bd075d9-c07b-4c7a-9a68-9c111a34eff4/ENCFF443XCO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF430SJA bigWig bigWig signal of unique reads dm6 ENCSR950GKT Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF902NNI/ 17765487 Kevin White, UChicago 4ed97411747547704e5950d33b94aef5 https://www.encodeproject.org/files/ENCFF430SJA/@@download/ENCFF430SJA.bigWig released s3://encode-public/2017/06/30/bd6d46c4-6eda-4ac9-8e55-56ddc5cbc704/ENCFF430SJA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF716ZIP fastq fastq reads ENCSR036PHI Control ChIP-seq /fly-donors/ENCDO176EUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38376/'], '@type': ['Target', 'Item'], 'name': 'BtbVII-dmelanogaster', 'label': 'BtbVII', '@id': '/targets/BtbVII-dmelanogaster/', 'title': 'BtbVII (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9b879d7-eb5f-4d5d-87f8-45ed540a8e4e', 'status': 'released'} dm3 3L 3147317 3167385 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 816357425 Kevin White, UChicago 6dfd755581a9219ca31749b9e5d21737 https://www.encodeproject.org/files/ENCFF716ZIP/@@download/ENCFF716ZIP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/f858457e-ba77-45d4-9d55-aff6644bc2a9/ENCFF716ZIP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF504MXD bam bam alignments dm3 ENCSR036PHI Control ChIP-seq /fly-donors/ENCDO176EUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38376/'], '@type': ['Target', 'Item'], 'name': 'BtbVII-dmelanogaster', 'label': 'BtbVII', '@id': '/targets/BtbVII-dmelanogaster/', 'title': 'BtbVII (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9b879d7-eb5f-4d5d-87f8-45ed540a8e4e', 'status': 'released'} dm3 3L 3147317 3167385 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF716ZIP/, /files/ENCFF059UHX/ 1097490723 Kevin White, UChicago deac17fcf14344078634082fce4931c1 https://www.encodeproject.org/files/ENCFF504MXD/@@download/ENCFF504MXD.bam released s3://encode-public/2016/12/21/602a0e48-15c1-4846-8583-748cdb8fa264/ENCFF504MXD.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF093HPE bam bam alignments dm6 ENCSR036PHI Control ChIP-seq /fly-donors/ENCDO176EUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38376/'], '@type': ['Target', 'Item'], 'name': 'BtbVII-dmelanogaster', 'label': 'BtbVII', '@id': '/targets/BtbVII-dmelanogaster/', 'title': 'BtbVII (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9b879d7-eb5f-4d5d-87f8-45ed540a8e4e', 'status': 'released'} dm3 3L 3147317 3167385 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF716ZIP/, /files/ENCFF479RCH/ 1085551224 Kevin White, UChicago f38cb63f0ab1808ad8ac1826c71ad1e2 https://www.encodeproject.org/files/ENCFF093HPE/@@download/ENCFF093HPE.bam released s3://encode-public/2016/12/21/0a30464e-6b44-4dd7-b39a-d8b74773f4f0/ENCFF093HPE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF289NZA bigWig bigWig read-depth normalized signal dm3 ENCSR036PHI Control ChIP-seq /fly-donors/ENCDO176EUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38376/'], '@type': ['Target', 'Item'], 'name': 'BtbVII-dmelanogaster', 'label': 'BtbVII', '@id': '/targets/BtbVII-dmelanogaster/', 'title': 'BtbVII (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9b879d7-eb5f-4d5d-87f8-45ed540a8e4e', 'status': 'released'} dm3 3L 3147317 3167385 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF504MXD/ 15338005 Kevin White, UChicago 9d175db47d8b7f9e6d28fa481046ee14 https://www.encodeproject.org/files/ENCFF289NZA/@@download/ENCFF289NZA.bigWig released s3://encode-public/2017/01/03/f442d130-b906-4e9b-bad2-d588725eafdc/ENCFF289NZA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF553SSO bigWig bigWig signal of unique reads dm3 ENCSR036PHI Control ChIP-seq /fly-donors/ENCDO176EUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38376/'], '@type': ['Target', 'Item'], 'name': 'BtbVII-dmelanogaster', 'label': 'BtbVII', '@id': '/targets/BtbVII-dmelanogaster/', 'title': 'BtbVII (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9b879d7-eb5f-4d5d-87f8-45ed540a8e4e', 'status': 'released'} dm3 3L 3147317 3167385 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF504MXD/ 15316254 Kevin White, UChicago 30788383b26459b1f675c995388844b9 https://www.encodeproject.org/files/ENCFF553SSO/@@download/ENCFF553SSO.bigWig released s3://encode-public/2017/01/03/96513035-5842-4127-864e-6d4e1efceeb6/ENCFF553SSO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF235VCP bigWig bigWig signal of unique reads dm6 ENCSR036PHI Control ChIP-seq /fly-donors/ENCDO176EUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38376/'], '@type': ['Target', 'Item'], 'name': 'BtbVII-dmelanogaster', 'label': 'BtbVII', '@id': '/targets/BtbVII-dmelanogaster/', 'title': 'BtbVII (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9b879d7-eb5f-4d5d-87f8-45ed540a8e4e', 'status': 'released'} dm3 3L 3147317 3167385 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093HPE/ 17418419 Kevin White, UChicago 7524dda8fbc4e7cf0bde5af6ec9c033d https://www.encodeproject.org/files/ENCFF235VCP/@@download/ENCFF235VCP.bigWig released s3://encode-public/2017/01/03/60e7c54b-a3e9-4a11-a4c9-584d60d42637/ENCFF235VCP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF368JRK bigWig bigWig read-depth normalized signal dm6 ENCSR036PHI Control ChIP-seq /fly-donors/ENCDO176EUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38376/'], '@type': ['Target', 'Item'], 'name': 'BtbVII-dmelanogaster', 'label': 'BtbVII', '@id': '/targets/BtbVII-dmelanogaster/', 'title': 'BtbVII (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a9b879d7-eb5f-4d5d-87f8-45ed540a8e4e', 'status': 'released'} dm3 3L 3147317 3167385 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093HPE/ 17454684 Kevin White, UChicago 33f5415e215f3bdf7d225352a77f0436 https://www.encodeproject.org/files/ENCFF368JRK/@@download/ENCFF368JRK.bigWig released s3://encode-public/2017/01/03/4c92bcb7-1bde-4b95-bd23-3b008bc9438f/ENCFF368JRK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF158YJL fastq fastq reads ENCSR419QKU Control ChIP-seq /fly-donors/ENCDO995XNU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31293/'], '@type': ['Target', 'Item'], 'name': 'N-dmelanogaster', 'label': 'N', '@id': '/targets/N-dmelanogaster/', 'title': 'N (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37e35981-6f10-42a1-968b-c64c65572678', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 50 single-ended 1813390563 Kevin White, UChicago 3a1fe8f1ddd57f0e8ed802dc1daf6eb1 https://www.encodeproject.org/files/ENCFF158YJL/@@download/ENCFF158YJL.fastq.gz Illumina HiSeq 2500 /files/ENCFF878ZRN/ released s3://encode-public/2016/08/24/3f0111e4-f33f-40c1-9857-20bbc77a62b6/ENCFF158YJL.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF855WHN bam bam alignments dm3 ENCSR419QKU Control ChIP-seq /fly-donors/ENCDO995XNU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31293/'], '@type': ['Target', 'Item'], 'name': 'N-dmelanogaster', 'label': 'N', '@id': '/targets/N-dmelanogaster/', 'title': 'N (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37e35981-6f10-42a1-968b-c64c65572678', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 50 /files/ENCFF158YJL/, /files/ENCFF059UHX/ 2242451772 Kevin White, UChicago d993a35ad3ac85bc7c4a3f0c1ad85e44 https://www.encodeproject.org/files/ENCFF855WHN/@@download/ENCFF855WHN.bam released s3://encode-public/2017/12/22/8b16cd0f-71aa-400f-a00d-f152d817794a/ENCFF855WHN.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF042RLD bam bam alignments dm6 ENCSR419QKU Control ChIP-seq /fly-donors/ENCDO995XNU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31293/'], '@type': ['Target', 'Item'], 'name': 'N-dmelanogaster', 'label': 'N', '@id': '/targets/N-dmelanogaster/', 'title': 'N (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37e35981-6f10-42a1-968b-c64c65572678', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 50 /files/ENCFF158YJL/, /files/ENCFF479RCH/ 2237768024 Kevin White, UChicago 3e8475abe673cd76abb3ec400177ef9e https://www.encodeproject.org/files/ENCFF042RLD/@@download/ENCFF042RLD.bam released s3://encode-public/2017/12/24/b8328218-f8c6-427b-af1d-55fb3b41563c/ENCFF042RLD.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF680CGK bigWig bigWig read-depth normalized signal dm3 ENCSR419QKU Control ChIP-seq /fly-donors/ENCDO995XNU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31293/'], '@type': ['Target', 'Item'], 'name': 'N-dmelanogaster', 'label': 'N', '@id': '/targets/N-dmelanogaster/', 'title': 'N (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37e35981-6f10-42a1-968b-c64c65572678', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF855WHN/ 15663451 Kevin White, UChicago 7a3e6624abd1291f6ad93900c56053e5 https://www.encodeproject.org/files/ENCFF680CGK/@@download/ENCFF680CGK.bigWig released s3://encode-public/2017/12/24/0958899b-f443-46de-97b0-9e76ddc825cb/ENCFF680CGK.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF769ETX bigWig bigWig signal of unique reads dm3 ENCSR419QKU Control ChIP-seq /fly-donors/ENCDO995XNU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31293/'], '@type': ['Target', 'Item'], 'name': 'N-dmelanogaster', 'label': 'N', '@id': '/targets/N-dmelanogaster/', 'title': 'N (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37e35981-6f10-42a1-968b-c64c65572678', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF855WHN/ 15641928 Kevin White, UChicago 3cf58cce30d1b011d1d2e31da82d78db https://www.encodeproject.org/files/ENCFF769ETX/@@download/ENCFF769ETX.bigWig released s3://encode-public/2017/12/24/c38df2e9-8eb2-4377-8f50-4fb3c2edaac7/ENCFF769ETX.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF868BRH bigWig bigWig signal of unique reads dm6 ENCSR419QKU Control ChIP-seq /fly-donors/ENCDO995XNU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31293/'], '@type': ['Target', 'Item'], 'name': 'N-dmelanogaster', 'label': 'N', '@id': '/targets/N-dmelanogaster/', 'title': 'N (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37e35981-6f10-42a1-968b-c64c65572678', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF042RLD/ 14038755 Kevin White, UChicago 19ec66505c386e9eff0fdce5f789a47d https://www.encodeproject.org/files/ENCFF868BRH/@@download/ENCFF868BRH.bigWig released s3://encode-public/2017/12/24/0e09298d-723d-4188-b5c9-427ea9e8433b/ENCFF868BRH.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF284GYM bigWig bigWig read-depth normalized signal dm6 ENCSR419QKU Control ChIP-seq /fly-donors/ENCDO995XNU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31293/'], '@type': ['Target', 'Item'], 'name': 'N-dmelanogaster', 'label': 'N', '@id': '/targets/N-dmelanogaster/', 'title': 'N (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '37e35981-6f10-42a1-968b-c64c65572678', 'status': 'released'} DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF042RLD/ 14061592 Kevin White, UChicago 7b89b418078ab52377350271f28a717b https://www.encodeproject.org/files/ENCFF284GYM/@@download/ENCFF284GYM.bigWig released s3://encode-public/2017/12/24/4f164fdd-f178-4b40-a9c1-2c55be3d29e3/ENCFF284GYM.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF357AAO fastq fastq reads ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF540KKH/ 2331722625 Michael Snyder, Stanford 4d4c8eeb75095af60ef1e6a9e83fbf5c SRA:SRR6214097 https://www.encodeproject.org/files/ENCFF357AAO/@@download/ENCFF357AAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/c1aaab46-48f5-42b3-8a59-6f96cef07c80/ENCFF357AAO.fastq.gz ENCFF540KKH fastq fastq reads ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF357AAO/ 2103386040 Michael Snyder, Stanford 73f850ae18104e0d90f9226226deb99b SRA:SRR6214097 https://www.encodeproject.org/files/ENCFF540KKH/@@download/ENCFF540KKH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/9ef719e7-67bf-47c7-97b7-3f121328aeb3/ENCFF540KKH.fastq.gz ENCFF109QKE bam bam unfiltered alignments hg19 ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF357AAO/, /files/ENCFF540KKH/ 4503440161 ENCODE Processing Pipeline 3d3f456999dedceef6cfee6ae684e5a9 https://www.encodeproject.org/files/ENCFF109QKE/@@download/ENCFF109QKE.bam released s3://encode-public/2016/12/07/b2d82116-c7e5-4635-b454-a5dc639fe8de/ENCFF109QKE.bam ENCODE3 hg19 archived ENCFF290OBJ bam bam unfiltered alignments GRCh38 ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF357AAO/, /files/ENCFF540KKH/ 4513654044 ENCODE Processing Pipeline dad84da28cd0f8a4f8e34e80b6fd1348 https://www.encodeproject.org/files/ENCFF290OBJ/@@download/ENCFF290OBJ.bam released s3://encode-public/2016/12/07/a0fdaf3f-6f05-4969-8ff2-b822dff9e0db/ENCFF290OBJ.bam ENCODE3 GRCh38 archived ENCFF894GZN bam bam alignments hg19 ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF357AAO/, /files/ENCFF540KKH/ 3736777614 ENCODE Processing Pipeline 84a741ca9ef828d5f4b5bc89c0784984 https://www.encodeproject.org/files/ENCFF894GZN/@@download/ENCFF894GZN.bam released s3://encode-public/2016/12/07/6d37762b-fc5e-428c-b267-fe40071265f3/ENCFF894GZN.bam ENCODE3 hg19 archived ENCFF219XWI bam bam alignments GRCh38 ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF357AAO/, /files/ENCFF540KKH/ 3743663272 ENCODE Processing Pipeline c87a34a6cb00d7a1d068d899d88c4f42 https://www.encodeproject.org/files/ENCFF219XWI/@@download/ENCFF219XWI.bam released s3://encode-public/2016/12/07/d6be0bac-e10c-4d91-9264-20f085dc2fad/ENCFF219XWI.bam ENCODE3 GRCh38 archived ENCFF392CXT bam bam unfiltered alignments GRCh38 ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF540KKH/, /files/ENCFF357AAO/ 4508284373 ENCODE Processing Pipeline 1f18dd8b5f846b972a6de6941d21ff6f https://www.encodeproject.org/files/ENCFF392CXT/@@download/ENCFF392CXT.bam released s3://encode-public/2020/06/02/5e39d5fe-c94d-4343-ad65-dff35b827cec/ENCFF392CXT.bam ENCODE4 GRCh38 released ENCFF698DQB bam bam alignments GRCh38 ENCSR961NYO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF540KKH/, /files/ENCFF357AAO/ 3683065031 ENCODE Processing Pipeline 8dce8971290240792619418177a22fbb https://www.encodeproject.org/files/ENCFF698DQB/@@download/ENCFF698DQB.bam released s3://encode-public/2020/06/02/7548b9e7-433b-4d1c-bade-0c14e3de48cb/ENCFF698DQB.bam ENCODE4 GRCh38 released ENCFF172HFY fastq fastq reads ENCSR993MMD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1158268419 Richard Myers, HAIB 55d439cad3d275e82eb78ec322ba3a31 SRA:SRR5112368 https://www.encodeproject.org/files/ENCFF172HFY/@@download/ENCFF172HFY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/ce66d951-8b3b-499e-9235-684ba0c6f187/ENCFF172HFY.fastq.gz ENCFF604KPS bam bam alignments mm10 ENCSR993MMD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF172HFY/ 990061171 ENCODE Processing Pipeline 13b44f54e84df47913a281f29376e04f https://www.encodeproject.org/files/ENCFF604KPS/@@download/ENCFF604KPS.bam released s3://encode-public/2016/05/20/9f9793f3-89fa-4ae7-aa68-6f84e8227d6c/ENCFF604KPS.bam ENCODE3 mm10 archived ENCFF457YDD bam bam unfiltered alignments mm10 ENCSR993MMD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF172HFY/ 1287047015 ENCODE Processing Pipeline 8db89efa895ba4848c35372c1d335c9b https://www.encodeproject.org/files/ENCFF457YDD/@@download/ENCFF457YDD.bam released s3://encode-public/2016/05/20/e61ee016-8cbc-4ab5-b1e0-6dae375a637c/ENCFF457YDD.bam ENCODE3 mm10 archived ENCFF711KRP bam bam unfiltered alignments mm10 ENCSR993MMD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF172HFY/ 1271601228 ENCODE Processing Pipeline 27da40e0d2f547407c321409faa48efa https://www.encodeproject.org/files/ENCFF711KRP/@@download/ENCFF711KRP.bam released s3://encode-public/2020/11/06/d5a151b6-3cae-422e-bf4a-e2996c90b145/ENCFF711KRP.bam ENCODE4 v1.6.1 mm10 released ENCFF740HKJ bam bam alignments mm10 ENCSR993MMD Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000945 stomach tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF172HFY/ 1011000158 ENCODE Processing Pipeline 094f972155b570e07e320adec97180f9 https://www.encodeproject.org/files/ENCFF740HKJ/@@download/ENCFF740HKJ.bam released s3://encode-public/2020/11/06/7c8044b2-4ae1-4a25-ae74-49a3d28c7c8b/ENCFF740HKJ.bam ENCODE4 v1.6.1 mm10 released ENCFF894UII fastq fastq reads ENCSR575NOI Control ChIP-seq /fly-donors/ENCDO012LRC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30981/'], '@type': ['Target', 'Item'], 'name': 'ac-dmelanogaster', 'label': 'ac', '@id': '/targets/ac-dmelanogaster/', 'title': 'ac (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9400585f-3755-440a-a8bc-0c1fc352f4ce', 'status': 'released'} dm3 X 223613 303645 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3582637445 Kevin White, UChicago 70bd7520dec6ee0d6e92fad7fa674927 https://www.encodeproject.org/files/ENCFF894UII/@@download/ENCFF894UII.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/5679de01-79ef-49d1-97a5-44a4dfde2452/ENCFF894UII.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF162QLE bam bam alignments dm3 ENCSR575NOI Control ChIP-seq /fly-donors/ENCDO012LRC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30981/'], '@type': ['Target', 'Item'], 'name': 'ac-dmelanogaster', 'label': 'ac', '@id': '/targets/ac-dmelanogaster/', 'title': 'ac (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9400585f-3755-440a-a8bc-0c1fc352f4ce', 'status': 'released'} dm3 X 223613 303645 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF894UII/, /files/ENCFF059UHX/ 4948242807 Kevin White, UChicago 14420ca0cedfa718410385f3a9ad07fc https://www.encodeproject.org/files/ENCFF162QLE/@@download/ENCFF162QLE.bam released s3://encode-public/2016/12/21/7e65075e-86cc-4610-923d-3b3a0b61a732/ENCFF162QLE.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF085MND bam bam alignments dm6 ENCSR575NOI Control ChIP-seq /fly-donors/ENCDO012LRC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30981/'], '@type': ['Target', 'Item'], 'name': 'ac-dmelanogaster', 'label': 'ac', '@id': '/targets/ac-dmelanogaster/', 'title': 'ac (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9400585f-3755-440a-a8bc-0c1fc352f4ce', 'status': 'released'} dm3 X 223613 303645 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF894UII/, /files/ENCFF479RCH/ 4904594478 Kevin White, UChicago 1acf431cc9891ebf03ca444bde5a9c02 https://www.encodeproject.org/files/ENCFF085MND/@@download/ENCFF085MND.bam released s3://encode-public/2016/12/21/e4a79278-75b5-4bd8-a163-b992d9b84dcf/ENCFF085MND.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF059RCP bigWig bigWig signal of unique reads dm3 ENCSR575NOI Control ChIP-seq /fly-donors/ENCDO012LRC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30981/'], '@type': ['Target', 'Item'], 'name': 'ac-dmelanogaster', 'label': 'ac', '@id': '/targets/ac-dmelanogaster/', 'title': 'ac (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9400585f-3755-440a-a8bc-0c1fc352f4ce', 'status': 'released'} dm3 X 223613 303645 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF162QLE/ 15876565 Kevin White, UChicago d775378ec459a7229fef4d3d7236fa3a https://www.encodeproject.org/files/ENCFF059RCP/@@download/ENCFF059RCP.bigWig released s3://encode-public/2017/01/03/db784645-a2a2-4931-ab8f-4dfd8ee1cf0d/ENCFF059RCP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF341UNR bigWig bigWig read-depth normalized signal dm3 ENCSR575NOI Control ChIP-seq /fly-donors/ENCDO012LRC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30981/'], '@type': ['Target', 'Item'], 'name': 'ac-dmelanogaster', 'label': 'ac', '@id': '/targets/ac-dmelanogaster/', 'title': 'ac (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9400585f-3755-440a-a8bc-0c1fc352f4ce', 'status': 'released'} dm3 X 223613 303645 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF162QLE/ 15923368 Kevin White, UChicago 11c6ce86ee4eb9c38aac471738e934d5 https://www.encodeproject.org/files/ENCFF341UNR/@@download/ENCFF341UNR.bigWig released s3://encode-public/2017/01/03/bf71ae0d-7e64-4612-baba-a085a1ae6cfd/ENCFF341UNR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF090QSY bigWig bigWig read-depth normalized signal dm6 ENCSR575NOI Control ChIP-seq /fly-donors/ENCDO012LRC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30981/'], '@type': ['Target', 'Item'], 'name': 'ac-dmelanogaster', 'label': 'ac', '@id': '/targets/ac-dmelanogaster/', 'title': 'ac (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9400585f-3755-440a-a8bc-0c1fc352f4ce', 'status': 'released'} dm3 X 223613 303645 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF085MND/ 17850722 Kevin White, UChicago af341e151813e9d32101b3c64e37f2ec https://www.encodeproject.org/files/ENCFF090QSY/@@download/ENCFF090QSY.bigWig released s3://encode-public/2017/01/03/f6fe5b06-6f10-417c-80df-67ea420eeafe/ENCFF090QSY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF099YLB bigWig bigWig signal of unique reads dm6 ENCSR575NOI Control ChIP-seq /fly-donors/ENCDO012LRC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30981/'], '@type': ['Target', 'Item'], 'name': 'ac-dmelanogaster', 'label': 'ac', '@id': '/targets/ac-dmelanogaster/', 'title': 'ac (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9400585f-3755-440a-a8bc-0c1fc352f4ce', 'status': 'released'} dm3 X 223613 303645 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF085MND/ 17772759 Kevin White, UChicago e2dec3146b089c860dd2d2965ce51a58 https://www.encodeproject.org/files/ENCFF099YLB/@@download/ENCFF099YLB.bigWig released s3://encode-public/2017/01/03/4c386223-2fd2-49f0-8c8d-2ea5a912f97e/ENCFF099YLB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF380UZC fastq fastq reads ENCSR356LLA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 single-ended 2380922682 Richard Myers, HAIB 0fd307c71cbbfc0709a5cf12c4e026fb SRA:SRR14105664 https://www.encodeproject.org/files/ENCFF380UZC/@@download/ENCFF380UZC.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/05/27/80afda8d-c409-4352-ae4e-789ec1f8c6fa/ENCFF380UZC.fastq.gz mild to moderate bottlenecking, low read depth ENCFF592TYT bam bam alignments GRCh38 ENCSR356LLA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF380UZC/ 1079542193 ENCODE Processing Pipeline 9fe5426b1775fcdc8cd21661b021eeee https://www.encodeproject.org/files/ENCFF592TYT/@@download/ENCFF592TYT.bam released s3://encode-public/2020/08/12/dc87e537-f751-4f90-8a27-001584189983/ENCFF592TYT.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF409BPY bam bam unfiltered alignments GRCh38 ENCSR356LLA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF380UZC/ 2417270968 ENCODE Processing Pipeline b0373a7d74cacffecfed1c3cd41f327b https://www.encodeproject.org/files/ENCFF409BPY/@@download/ENCFF409BPY.bam released s3://encode-public/2020/08/12/2b70d95c-8a3e-4f56-9189-aafb90ad491c/ENCFF409BPY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF799QGS fastq fastq reads ENCSR281QHD Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1114969631 Kevin White, UChicago 0990724494f28239f53c874027766102 https://www.encodeproject.org/files/ENCFF799QGS/@@download/ENCFF799QGS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/23/a0855a87-cfff-40bb-832a-f9ccfea2c4a5/ENCFF799QGS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF221KJF bam bam alignments dm3 ENCSR281QHD Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF799QGS/ 1384576953 Kevin White, UChicago 849d16431663e32c9454d6aa370b473b https://www.encodeproject.org/files/ENCFF221KJF/@@download/ENCFF221KJF.bam released s3://encode-public/2017/06/19/bbca09d2-699b-4a16-93a3-4e36c938cec2/ENCFF221KJF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF336CIM bam bam alignments dm6 ENCSR281QHD Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF799QGS/ 1376144156 Kevin White, UChicago 45d6b110f83eae0333bfc8e0a9ba23d7 https://www.encodeproject.org/files/ENCFF336CIM/@@download/ENCFF336CIM.bam released s3://encode-public/2017/06/28/89907293-3070-4d57-9e02-87bf1e0251bd/ENCFF336CIM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF651NFN bigWig bigWig signal of unique reads dm3 ENCSR281QHD Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF221KJF/ 15122560 Kevin White, UChicago 4f13374f1851083ef6a522bbca61e2ac https://www.encodeproject.org/files/ENCFF651NFN/@@download/ENCFF651NFN.bigWig released s3://encode-public/2017/06/29/77f9004d-9ff5-4fd3-861a-b5547c18255f/ENCFF651NFN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF967HXP bigWig bigWig read-depth normalized signal dm3 ENCSR281QHD Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF221KJF/ 15120967 Kevin White, UChicago 95063421d105515110c2a0d62a7de5d4 https://www.encodeproject.org/files/ENCFF967HXP/@@download/ENCFF967HXP.bigWig released s3://encode-public/2017/06/29/6e5f535d-99a7-4bd6-a347-3c98c5b367fa/ENCFF967HXP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF975KNZ bigWig bigWig read-depth normalized signal dm6 ENCSR281QHD Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF336CIM/ 17242672 Kevin White, UChicago fd9790b3306c40f61951e42a6e7e2872 https://www.encodeproject.org/files/ENCFF975KNZ/@@download/ENCFF975KNZ.bigWig released s3://encode-public/2017/06/30/98773f2e-dbfe-4f38-b5e1-4953cfd49a3e/ENCFF975KNZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF102UVG bigWig bigWig signal of unique reads dm6 ENCSR281QHD Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF336CIM/ 17249665 Kevin White, UChicago 09cf1bb89f9745807c20dcf4116d1f59 https://www.encodeproject.org/files/ENCFF102UVG/@@download/ENCFF102UVG.bigWig released s3://encode-public/2017/06/30/c73f8d48-6012-4582-811f-f313538f5787/ENCFF102UVG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF685NZG fastq fastq reads ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF816SJK/ 3466313653 Michael Snyder, Stanford 6c35f581f73446b487493de9c7878bce SRA:SRR8660174 https://www.encodeproject.org/files/ENCFF685NZG/@@download/ENCFF685NZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/02/c5ba3754-39c3-431b-ad21-b2226a91907f/ENCFF685NZG.fastq.gz mild to moderate bottlenecking ENCFF816SJK fastq fastq reads ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF685NZG/ 3326081086 Michael Snyder, Stanford 1d5dd809ef018fbf7981a3d75959f55f SRA:SRR8660174 https://www.encodeproject.org/files/ENCFF816SJK/@@download/ENCFF816SJK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/02/01bfa8f0-09c3-4b28-a5a7-3b16ce9c14f1/ENCFF816SJK.fastq.gz mild to moderate bottlenecking ENCFF106DYM bam bam unfiltered alignments GRCh38 ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF685NZG/, /files/ENCFF816SJK/ 6585739029 ENCODE Processing Pipeline ba7945589ff6fa393558f105053c4d84 https://www.encodeproject.org/files/ENCFF106DYM/@@download/ENCFF106DYM.bam released s3://encode-public/2016/12/07/2292875a-6d91-458b-ae81-5147ae334743/ENCFF106DYM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF334DXZ bam bam unfiltered alignments hg19 ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF685NZG/, /files/ENCFF816SJK/ 6572405276 ENCODE Processing Pipeline fafeeea2e25177a1fc72553be5c34308 https://www.encodeproject.org/files/ENCFF334DXZ/@@download/ENCFF334DXZ.bam released s3://encode-public/2016/12/07/27d0850a-2da4-4905-97ae-d308d554a356/ENCFF334DXZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF468PJR bam bam alignments GRCh38 ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF685NZG/, /files/ENCFF816SJK/ 5200408171 ENCODE Processing Pipeline 964ef009e000d290cac52f74ee82f0fd https://www.encodeproject.org/files/ENCFF468PJR/@@download/ENCFF468PJR.bam released s3://encode-public/2016/12/07/591b8c69-686e-490d-a54b-2681d57510c5/ENCFF468PJR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF796NXO bam bam alignments hg19 ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF685NZG/, /files/ENCFF816SJK/ 5190189364 ENCODE Processing Pipeline 4b25ebdc422e82ae20d7709724904625 https://www.encodeproject.org/files/ENCFF796NXO/@@download/ENCFF796NXO.bam released s3://encode-public/2016/12/07/483862e2-5076-416b-a103-83a39d15a771/ENCFF796NXO.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF935QGD bam bam unfiltered alignments GRCh38 ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF816SJK/, /files/ENCFF685NZG/ 6580189187 ENCODE Processing Pipeline de3d7c992018bb417b2bf6e6e8bba337 https://www.encodeproject.org/files/ENCFF935QGD/@@download/ENCFF935QGD.bam released s3://encode-public/2020/06/03/3507154c-60ee-4f37-abe4-65b81fc7a542/ENCFF935QGD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF497SSR bam bam alignments GRCh38 ENCSR199UFW Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF816SJK/, /files/ENCFF685NZG/ 5107804995 ENCODE Processing Pipeline da87ff1da3e9d7e4801f5cf6751a5c5f https://www.encodeproject.org/files/ENCFF497SSR/@@download/ENCFF497SSR.bam released s3://encode-public/2020/06/03/d544a37f-a5a9-4235-9028-1c9c8fe42c6e/ENCFF497SSR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF876PDP fastq fastq reads ENCSR144AFP Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1332979279 Kevin White, UChicago fca8b1859b7f46b080b1b6fd2282c5ef https://www.encodeproject.org/files/ENCFF876PDP/@@download/ENCFF876PDP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/08/23/c795a98c-1f7e-4fb6-9bd1-97a0a0304662/ENCFF876PDP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF762FRV bam bam alignments dm3 ENCSR144AFP Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF876PDP/ 1649323919 Kevin White, UChicago fc2b1b49c813e6f4fea1599ef12bb51a https://www.encodeproject.org/files/ENCFF762FRV/@@download/ENCFF762FRV.bam released s3://encode-public/2017/06/19/beb40ec1-59f3-4b35-a1f7-bcc0c7d6a529/ENCFF762FRV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF459UGG bam bam alignments dm6 ENCSR144AFP Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF876PDP/ 1643781931 Kevin White, UChicago cf074f7d2b6f56738197c3635ba81844 https://www.encodeproject.org/files/ENCFF459UGG/@@download/ENCFF459UGG.bam released s3://encode-public/2017/06/28/78a6f291-929e-4435-83ac-8c8bd7ef5fb6/ENCFF459UGG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF225QOV bigWig bigWig signal of unique reads dm3 ENCSR144AFP Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF762FRV/ 15606943 Kevin White, UChicago e8f1a36bdbd2ee62787c8ee0993ae0d3 https://www.encodeproject.org/files/ENCFF225QOV/@@download/ENCFF225QOV.bigWig released s3://encode-public/2017/06/29/ee9024ed-da17-4f2d-8081-a69140c09c1d/ENCFF225QOV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF435BSO bigWig bigWig read-depth normalized signal dm3 ENCSR144AFP Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF762FRV/ 15609945 Kevin White, UChicago de16bc0fa44dcce36ea75812ea52f138 https://www.encodeproject.org/files/ENCFF435BSO/@@download/ENCFF435BSO.bigWig released s3://encode-public/2017/06/29/b4c309ae-836d-4816-a3e2-316590d9b6f9/ENCFF435BSO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF141HGD bigWig bigWig read-depth normalized signal dm6 ENCSR144AFP Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF459UGG/ 17655674 Kevin White, UChicago 1f05424b9c0d5b206f0698f7437437b2 https://www.encodeproject.org/files/ENCFF141HGD/@@download/ENCFF141HGD.bigWig released s3://encode-public/2017/06/30/be1239ce-e586-42a5-8866-7e767cc9751e/ENCFF141HGD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF207JZG bigWig bigWig signal of unique reads dm6 ENCSR144AFP Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF459UGG/ 17650958 Kevin White, UChicago 60c0c87cf10ee19d669fd5244c91a87d https://www.encodeproject.org/files/ENCFF207JZG/@@download/ENCFF207JZG.bigWig released s3://encode-public/2017/06/30/8e21ce72-59ef-431f-9c83-0b909ffa6182/ENCFF207JZG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF549NNN fastq fastq reads ENCSR344TQJ Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 1660220885 Kevin White, UChicago 5d5cdeeedcb63a325407d47ec714a5e0 https://www.encodeproject.org/files/ENCFF549NNN/@@download/ENCFF549NNN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/23/ee9214db-fc11-42b5-bb71-ddaa7bc465a2/ENCFF549NNN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF582LEN bam bam alignments dm3 ENCSR344TQJ Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF549NNN/ 2118807313 Kevin White, UChicago d51a54230ddaa65ed60c038fcdc8d524 https://www.encodeproject.org/files/ENCFF582LEN/@@download/ENCFF582LEN.bam released s3://encode-public/2017/06/19/b8c0a82a-693c-4ae5-b3e0-67e8074407a5/ENCFF582LEN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF627IHI bam bam alignments dm6 ENCSR344TQJ Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF549NNN/ 2106746430 Kevin White, UChicago 669bb1119baa92d71b95dbc82b24ecd9 https://www.encodeproject.org/files/ENCFF627IHI/@@download/ENCFF627IHI.bam released s3://encode-public/2017/06/28/6c051e12-47ba-47ee-a41e-9836798ba8fa/ENCFF627IHI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF192HAL bigWig bigWig signal of unique reads dm3 ENCSR344TQJ Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF582LEN/ 15885698 Kevin White, UChicago 54d28f36af5098bf63c255df9dec8c9b https://www.encodeproject.org/files/ENCFF192HAL/@@download/ENCFF192HAL.bigWig released s3://encode-public/2017/06/29/0f26ac9e-01bb-49a8-8090-58b8ac63f977/ENCFF192HAL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF128JZG bigWig bigWig read-depth normalized signal dm3 ENCSR344TQJ Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF582LEN/ 15855101 Kevin White, UChicago 595a86631f2cc63075a3eb99ce4932d5 https://www.encodeproject.org/files/ENCFF128JZG/@@download/ENCFF128JZG.bigWig released s3://encode-public/2017/06/29/f100d540-8bb1-4e81-876f-e9a533854298/ENCFF128JZG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF282DFA bigWig bigWig read-depth normalized signal dm6 ENCSR344TQJ Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF627IHI/ 17832092 Kevin White, UChicago 34e801bd6d0fa6befff19708a7f8f13d https://www.encodeproject.org/files/ENCFF282DFA/@@download/ENCFF282DFA.bigWig released s3://encode-public/2017/06/30/5b27497b-37e1-412c-befd-d3a5d8326ae7/ENCFF282DFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF825BKY bigWig bigWig signal of unique reads dm6 ENCSR344TQJ Control ChIP-seq /fly-donors/ENCDO395MOB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36073/'], '@type': ['Target', 'Item'], 'name': 'Hr3-dmelanogaster', 'label': 'Hr3', '@id': '/targets/Hr3-dmelanogaster/', 'title': 'Hr3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '857cb921-a858-4232-893a-6b9e083fb2d8', 'status': 'released'} dm3 2R 6079816 6166290 DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF627IHI/ 17877923 Kevin White, UChicago d5844681db0f7f5666dffe86dd1b0a8c https://www.encodeproject.org/files/ENCFF825BKY/@@download/ENCFF825BKY.bigWig released s3://encode-public/2017/06/30/5e190c89-6354-4eeb-8ba2-009d190f874c/ENCFF825BKY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF897QYN fastq fastq reads ENCSR442ZHJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2014-03-31 modENCODE 1 1_1 30 single-ended 279485751 David MacAlpine, Duke 863856b25f701a46bebe36f5da53474f https://www.encodeproject.org/files/ENCFF897QYN/@@download/ENCFF897QYN.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2016/01/29/a204c4af-405a-4857-bf7d-f42723d33690/ENCFF897QYN.fastq.gz lacking processed data ENCFF194SYL fastq fastq reads ENCSR442ZHJ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2014-03-31 modENCODE 2 2_1 30 single-ended 240050207 David MacAlpine, Duke 9f55bd21d5874ee3df6341d06edd4b79 https://www.encodeproject.org/files/ENCFF194SYL/@@download/ENCFF194SYL.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2016/01/29/17f4f446-89d9-4d6a-8802-bed9f676727e/ENCFF194SYL.fastq.gz lacking processed data ENCFF134EKJ fastq fastq reads ENCSR175NUT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1894'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2307/'], '@type': 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unfiltered alignments GRCh38 ENCSR175NUT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1894'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2307/'], '@type': ['Target', 'Item'], 'name': 'FOXS1-human', 'label': 'FOXS1', '@id': '/targets/FOXS1-human/', 'title': 'FOXS1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'df28f5be-ca7a-4b73-9f4c-fb77b964fcd9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF134EKJ/, /files/ENCFF934LUS/ 6855638757 ENCODE Processing Pipeline b04863f370d500c3d54571389e7f0876 https://www.encodeproject.org/files/ENCFF843XMT/@@download/ENCFF843XMT.bam released s3://encode-public/2020/04/20/f30f542e-7e08-4326-83af-dbe6fa416a2b/ENCFF843XMT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF883KRW bam bam unfiltered alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF269YAY/, /files/ENCFF110MCL/ 981003691 ENCODE Processing Pipeline 00b3869c31724ac6d8acc6d9be38a57a https://www.encodeproject.org/files/ENCFF883KRW/@@download/ENCFF883KRW.bam released s3://encode-public/2020/09/29/d938bd52-15c1-48e4-99b8-aeae5f810135/ENCFF883KRW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF937UUV bam bam alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF880QTM/, /files/ENCFF110MCL/ 366964517 ENCODE Processing Pipeline 9d988980aeb3f3553e74641d4483b50d https://www.encodeproject.org/files/ENCFF937UUV/@@download/ENCFF937UUV.bam released s3://encode-public/2020/09/29/6f50b409-8208-4ab8-ab70-33962498969b/ENCFF937UUV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF869JIS bam bam unfiltered alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF880QTM/, /files/ENCFF110MCL/ 451993167 ENCODE Processing Pipeline 6752cc844864d47a10d75bc35b1bd56a https://www.encodeproject.org/files/ENCFF869JIS/@@download/ENCFF869JIS.bam released s3://encode-public/2020/09/29/aa200060-ec15-41b5-a535-790f88866d2e/ENCFF869JIS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF525MWW bam bam alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF036IYU/, /files/ENCFF110MCL/ 572370300 ENCODE Processing Pipeline 2b382f5cd989cb745c5f49be453523f7 https://www.encodeproject.org/files/ENCFF525MWW/@@download/ENCFF525MWW.bam released s3://encode-public/2020/09/29/2d992988-da9f-427c-95bd-8bb36ff00712/ENCFF525MWW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF101VJP bam bam alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF269YAY/, /files/ENCFF110MCL/ 820441913 ENCODE Processing Pipeline 885c8c315b1911298ac96177358401cf https://www.encodeproject.org/files/ENCFF101VJP/@@download/ENCFF101VJP.bam released s3://encode-public/2020/09/29/fe3c2d9e-be6a-440c-af40-72c12a4568bb/ENCFF101VJP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF880QTM fastq fastq reads ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 334510682 Tim Reddy, Duke ad8bcd6cf02197249c5edc93bca3d3df SRA:SRR5093166 https://www.encodeproject.org/files/ENCFF880QTM/@@download/ENCFF880QTM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/4ea5201c-77fb-4cfe-963c-175a795fc1b3/ENCFF880QTM.fastq.gz ENCFF269YAY fastq fastq reads ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 715861558 Tim Reddy, Duke 30647043c40548f440d89c2af276d473 SRA:SRR5093164 https://www.encodeproject.org/files/ENCFF269YAY/@@download/ENCFF269YAY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/d11f2163-edec-48a5-a6ee-07213e284459/ENCFF269YAY.fastq.gz ENCFF036IYU fastq fastq reads ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 510498776 Tim Reddy, Duke 0afa85c1e8b2ba0d71f1e47311b93e82 SRA:SRR5093165 https://www.encodeproject.org/files/ENCFF036IYU/@@download/ENCFF036IYU.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/8e03ecfd-232d-440d-81a0-54d465b88800/ENCFF036IYU.fastq.gz ENCFF218BXR bam bam alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF269YAY/ 781047602 Tim Reddy, Duke 1596134af1b3a5db6026f52a357196f5 https://www.encodeproject.org/files/ENCFF218BXR/@@download/ENCFF218BXR.bam released s3://encode-public/2016/05/31/bb7788f2-c8d1-4382-8386-a6d1fc8bb8e4/ENCFF218BXR.bam Lab custom GRCh38 archived ENCFF254UMY bam bam alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF880QTM/ 349216227 Tim Reddy, Duke 25267ac53f8c98fd8cef5f469449926d https://www.encodeproject.org/files/ENCFF254UMY/@@download/ENCFF254UMY.bam released s3://encode-public/2016/05/31/42e75af5-e5c7-445e-a079-7c15ccb5e3e3/ENCFF254UMY.bam Lab custom GRCh38 archived ENCFF560OIB bam bam alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF036IYU/ 547451596 Tim Reddy, Duke 83e8d76151a115f92677cf7cad1f3592 https://www.encodeproject.org/files/ENCFF560OIB/@@download/ENCFF560OIB.bam released s3://encode-public/2016/05/31/43817673-6d47-4872-85e2-4288572ef846/ENCFF560OIB.bam Lab custom GRCh38 archived ENCFF018GGN bam bam unfiltered alignments GRCh38 ENCSR887SZF Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 6 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF036IYU/, /files/ENCFF110MCL/ 693498001 ENCODE Processing Pipeline fea54922e39b11a90368ca73ed609e0f https://www.encodeproject.org/files/ENCFF018GGN/@@download/ENCFF018GGN.bam released s3://encode-public/2020/09/29/431a7e24-ec15-4bf1-9567-f6eed8052882/ENCFF018GGN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF526SKC fastq fastq reads ENCSR116ZCQ Control ChIP-seq /fly-donors/ENCDO932MVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34371/'], '@type': ['Target', 'Item'], 'name': 'CG18619-dmelanogaster', 'label': 'CG18619', '@id': '/targets/CG18619-dmelanogaster/', 'title': 'CG18619 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f455de1d-bc70-494e-bb3a-bef0d0761ff3', 'status': 'released'} dm3 2L 10257792 10276387 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 929001090 Kevin White, UChicago 84b6773a2a2863caa1ba5aa4845e9181 https://www.encodeproject.org/files/ENCFF526SKC/@@download/ENCFF526SKC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/555f931c-a696-478a-930b-7439b433a40c/ENCFF526SKC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF574FLN bam bam alignments dm3 ENCSR116ZCQ Control ChIP-seq /fly-donors/ENCDO932MVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34371/'], '@type': ['Target', 'Item'], 'name': 'CG18619-dmelanogaster', 'label': 'CG18619', '@id': '/targets/CG18619-dmelanogaster/', 'title': 'CG18619 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f455de1d-bc70-494e-bb3a-bef0d0761ff3', 'status': 'released'} dm3 2L 10257792 10276387 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF526SKC/, /files/ENCFF059UHX/ 1265340092 Kevin White, UChicago d1297a3a7bd182bdeaa37f1a83fe7ca1 https://www.encodeproject.org/files/ENCFF574FLN/@@download/ENCFF574FLN.bam released s3://encode-public/2016/12/23/68826cfb-5d83-4965-a382-9b6c845ef2e1/ENCFF574FLN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF424PDX bam bam alignments dm6 ENCSR116ZCQ Control ChIP-seq /fly-donors/ENCDO932MVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34371/'], '@type': ['Target', 'Item'], 'name': 'CG18619-dmelanogaster', 'label': 'CG18619', '@id': '/targets/CG18619-dmelanogaster/', 'title': 'CG18619 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f455de1d-bc70-494e-bb3a-bef0d0761ff3', 'status': 'released'} dm3 2L 10257792 10276387 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF526SKC/, /files/ENCFF479RCH/ 1255521824 Kevin White, UChicago 98559f7c98aca7bfc1063290d85a4f2a https://www.encodeproject.org/files/ENCFF424PDX/@@download/ENCFF424PDX.bam released s3://encode-public/2016/12/24/a5399277-38da-40c8-aaf8-c1a9e63bfc4f/ENCFF424PDX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF150PTS bigWig bigWig read-depth normalized signal dm3 ENCSR116ZCQ Control ChIP-seq /fly-donors/ENCDO932MVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34371/'], '@type': ['Target', 'Item'], 'name': 'CG18619-dmelanogaster', 'label': 'CG18619', '@id': '/targets/CG18619-dmelanogaster/', 'title': 'CG18619 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f455de1d-bc70-494e-bb3a-bef0d0761ff3', 'status': 'released'} dm3 2L 10257792 10276387 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF574FLN/ 15545840 Kevin White, UChicago fe2b6edfaacfb634771b69131795be77 https://www.encodeproject.org/files/ENCFF150PTS/@@download/ENCFF150PTS.bigWig released s3://encode-public/2017/01/06/957d903f-68a3-48a9-bf3f-956b6e61dadb/ENCFF150PTS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF753DNX bigWig bigWig signal of unique reads dm3 ENCSR116ZCQ Control ChIP-seq /fly-donors/ENCDO932MVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34371/'], '@type': ['Target', 'Item'], 'name': 'CG18619-dmelanogaster', 'label': 'CG18619', '@id': '/targets/CG18619-dmelanogaster/', 'title': 'CG18619 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f455de1d-bc70-494e-bb3a-bef0d0761ff3', 'status': 'released'} dm3 2L 10257792 10276387 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF574FLN/ 15529041 Kevin White, UChicago 363531f0967a4cbad817ef9a686d8666 https://www.encodeproject.org/files/ENCFF753DNX/@@download/ENCFF753DNX.bigWig released s3://encode-public/2017/01/06/e6066870-2126-4e4b-89fe-4856ac955f65/ENCFF753DNX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF742OFP bigWig bigWig read-depth normalized signal dm6 ENCSR116ZCQ Control ChIP-seq /fly-donors/ENCDO932MVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34371/'], '@type': ['Target', 'Item'], 'name': 'CG18619-dmelanogaster', 'label': 'CG18619', '@id': '/targets/CG18619-dmelanogaster/', 'title': 'CG18619 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f455de1d-bc70-494e-bb3a-bef0d0761ff3', 'status': 'released'} dm3 2L 10257792 10276387 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF424PDX/ 17640994 Kevin White, UChicago 575c66e24bc36ded6e742d1e8185017c https://www.encodeproject.org/files/ENCFF742OFP/@@download/ENCFF742OFP.bigWig released s3://encode-public/2017/01/06/38f29dfe-1908-4f22-b27b-9c71f8bda438/ENCFF742OFP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF292XME bigWig bigWig signal of unique reads dm6 ENCSR116ZCQ Control ChIP-seq /fly-donors/ENCDO932MVR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34371/'], '@type': ['Target', 'Item'], 'name': 'CG18619-dmelanogaster', 'label': 'CG18619', '@id': '/targets/CG18619-dmelanogaster/', 'title': 'CG18619 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f455de1d-bc70-494e-bb3a-bef0d0761ff3', 'status': 'released'} dm3 2L 10257792 10276387 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF424PDX/ 17587454 Kevin White, UChicago f548cc6720eb7b005dee7ff2894973ca https://www.encodeproject.org/files/ENCFF292XME/@@download/ENCFF292XME.bigWig released s3://encode-public/2017/01/06/484f5108-a00e-4fb1-9f59-9861b42c4a05/ENCFF292XME.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF202OMW fastq fastq reads ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF349FFX/ 3699735987 Michael Snyder, Stanford 949ee3e83e255f015c4c48af3d06edb7 SRA:SRR5112308 https://www.encodeproject.org/files/ENCFF202OMW/@@download/ENCFF202OMW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/9c59d301-7e4d-42fc-9edb-3f67f7a0f0b1/ENCFF202OMW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF349FFX fastq fastq reads ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF202OMW/ 3978869505 Michael Snyder, Stanford eb310c4fee7deeebc9f172c88f8962a9 SRA:SRR5112308 https://www.encodeproject.org/files/ENCFF349FFX/@@download/ENCFF349FFX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/e1058de2-91db-44b4-9042-b9bd109f9d63/ENCFF349FFX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF829GAK fastq fastq reads ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF647DBV/ 4385566989 Michael Snyder, Stanford a201976b5424cc5f45c5235298c16e86 SRA:SRR5112307 https://www.encodeproject.org/files/ENCFF829GAK/@@download/ENCFF829GAK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/3cf8e940-6659-4183-b020-a150a2204abb/ENCFF829GAK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF647DBV fastq fastq reads ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF829GAK/ 4730021034 Michael Snyder, Stanford 589125f85ba0cb00cf95d6d7949cc115 SRA:SRR5112307 https://www.encodeproject.org/files/ENCFF647DBV/@@download/ENCFF647DBV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/61c555d7-f942-48c1-9066-69dd0b3e7d1e/ENCFF647DBV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF518ORR bam bam unfiltered alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF202OMW/, /files/ENCFF349FFX/, /files/ENCFF643CGH/ 6714582580 ENCODE Processing Pipeline dd8a2f2422475af92d3302e6db4d5c14 https://www.encodeproject.org/files/ENCFF518ORR/@@download/ENCFF518ORR.bam released s3://encode-public/2016/09/16/a4ad4fd2-7734-4422-92c7-17e5e65c01ba/ENCFF518ORR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF413OJD bam bam unfiltered alignments hg19 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF647DBV/, /files/ENCFF829GAK/, /files/ENCFF807MUK/ 7499352508 ENCODE Processing Pipeline f1a4e5a9c90dc2d416958f5cef73e2b4 https://www.encodeproject.org/files/ENCFF413OJD/@@download/ENCFF413OJD.bam released s3://encode-public/2016/09/16/82886881-435f-4d2c-be9c-1aba199d73d1/ENCFF413OJD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF819JLQ bam bam unfiltered alignments hg19 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF202OMW/, /files/ENCFF349FFX/, /files/ENCFF807MUK/ 6715818817 ENCODE Processing Pipeline 0f69bd969d49cc4367a8df67cb5f8eb4 https://www.encodeproject.org/files/ENCFF819JLQ/@@download/ENCFF819JLQ.bam released s3://encode-public/2016/09/16/ae71ddb4-2184-4dab-88b3-a41ce82ae189/ENCFF819JLQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF046KKT bam bam unfiltered alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF647DBV/, /files/ENCFF829GAK/, /files/ENCFF643CGH/ 7498208469 ENCODE Processing Pipeline d2c417b6f890a062233ef6e43d4c8aec https://www.encodeproject.org/files/ENCFF046KKT/@@download/ENCFF046KKT.bam released s3://encode-public/2016/09/16/baa3b205-4415-4eba-9b2a-681c784187fc/ENCFF046KKT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF666ATR bam bam alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF202OMW/, /files/ENCFF349FFX/, /files/ENCFF643CGH/ 4142410403 ENCODE Processing Pipeline 8a70a615c323dec7f83bae0a1d45d69f https://www.encodeproject.org/files/ENCFF666ATR/@@download/ENCFF666ATR.bam released s3://encode-public/2016/09/16/b49b9351-a52e-4160-8479-207c59452bb7/ENCFF666ATR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF901CND bam bam alignments hg19 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF202OMW/, /files/ENCFF349FFX/, /files/ENCFF807MUK/ 4131805791 ENCODE Processing Pipeline c0874abe8575b914442c8c0718f8a7cc https://www.encodeproject.org/files/ENCFF901CND/@@download/ENCFF901CND.bam released s3://encode-public/2016/09/16/6b92f34f-49b0-4651-9f86-e89128d34388/ENCFF901CND.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF592WAL bam bam alignments hg19 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF647DBV/, /files/ENCFF829GAK/, /files/ENCFF807MUK/ 4162502470 ENCODE Processing Pipeline 8d2f71be31f24882ebb40f472938b2df https://www.encodeproject.org/files/ENCFF592WAL/@@download/ENCFF592WAL.bam released s3://encode-public/2016/09/16/62ae87ff-91de-4dcd-8a99-59146ae49f4b/ENCFF592WAL.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF322NTO bam bam alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF647DBV/, /files/ENCFF829GAK/, /files/ENCFF643CGH/ 4168932459 ENCODE Processing Pipeline e75362030be66ae70c467cfb7b049337 https://www.encodeproject.org/files/ENCFF322NTO/@@download/ENCFF322NTO.bam released s3://encode-public/2016/09/16/651ccf1b-5966-487e-ad17-99fddbcfcc3f/ENCFF322NTO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF054FPS bam bam unfiltered alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF202OMW/, /files/ENCFF349FFX/ 6734400462 ENCODE Processing Pipeline a5b4e44d5f68bb0872aba00260b0e5e1 https://www.encodeproject.org/files/ENCFF054FPS/@@download/ENCFF054FPS.bam released s3://encode-public/2020/06/02/62991408-cf67-48b0-9597-d909c39c7b4d/ENCFF054FPS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF377KFK bam bam alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF202OMW/, /files/ENCFF349FFX/ 4071505742 ENCODE Processing Pipeline e0e41bd5e51cc92d0a700944fe289393 https://www.encodeproject.org/files/ENCFF377KFK/@@download/ENCFF377KFK.bam released s3://encode-public/2020/06/02/a7d92304-c978-4f6d-acc6-b811dd81685b/ENCFF377KFK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF232AKP bam bam alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF829GAK/, /files/ENCFF647DBV/ 4080847405 ENCODE Processing Pipeline c5461dc1bbb542d74e0c676ac42e2bbb https://www.encodeproject.org/files/ENCFF232AKP/@@download/ENCFF232AKP.bam released s3://encode-public/2020/06/02/0373c0a6-12e8-46cf-9e27-a88635e67000/ENCFF232AKP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF498BOQ bam bam unfiltered alignments GRCh38 ENCSR956WYO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF829GAK/, /files/ENCFF647DBV/ 7532088339 ENCODE Processing Pipeline 488dbc9126e2da1738e8e3aa93745d2f https://www.encodeproject.org/files/ENCFF498BOQ/@@download/ENCFF498BOQ.bam released s3://encode-public/2020/06/02/86240643-52ba-4159-908b-6297f5fe4d2c/ENCFF498BOQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF513OBT fastq fastq reads ENCSR690IYP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 1869646685 Richard Myers, HAIB 8fbee6c0cac6570c01b1bfc6bdd03493 SRA:SRR14107923 https://www.encodeproject.org/files/ENCFF513OBT/@@download/ENCFF513OBT.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/03/30/8ef088d2-5ec3-4000-815c-929bbca3883a/ENCFF513OBT.fastq.gz mild to moderate bottlenecking, low read depth ENCFF078BYS bam bam unfiltered alignments GRCh38 ENCSR690IYP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF513OBT/ 1743425673 ENCODE Processing Pipeline 9be2a6e27c1456292ec9248f119992b8 https://www.encodeproject.org/files/ENCFF078BYS/@@download/ENCFF078BYS.bam released s3://encode-public/2020/04/20/09b2baaf-47e7-4ea6-b2c4-30300719e52e/ENCFF078BYS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF522JVF bam bam alignments GRCh38 ENCSR690IYP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF513OBT/ 1027395521 ENCODE Processing Pipeline 95e668e5ad2d2692b6bf618095721778 https://www.encodeproject.org/files/ENCFF522JVF/@@download/ENCFF522JVF.bam released s3://encode-public/2020/04/20/cc6d41b7-3dc2-49e4-a1d0-e8dfa672af6d/ENCFF522JVF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF928AXT fastq fastq reads ENCSR267NPO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1912'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2295/'], '@type': ['Target', 'Item'], 'name': 'FOXF2-human', 'label': 'FOXF2', '@id': '/targets/FOXF2-human/', 'title': 'FOXF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ab3ac416-c1d9-4882-8eee-3a58e01725d7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF047DCH/ 2386621004 Michael Snyder, Stanford af7669e2d1a6cbd98dd80bd0f037246f SRA:SRR14103806 https://www.encodeproject.org/files/ENCFF928AXT/@@download/ENCFF928AXT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/d0262616-a11c-4e7a-bedc-76b9d039dc2f/ENCFF928AXT.fastq.gz ENCFF047DCH fastq fastq reads ENCSR267NPO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1912'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2295/'], '@type': ['Target', 'Item'], 'name': 'FOXF2-human', 'label': 'FOXF2', '@id': '/targets/FOXF2-human/', 'title': 'FOXF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ab3ac416-c1d9-4882-8eee-3a58e01725d7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF928AXT/ 2617781765 Michael Snyder, Stanford 853e54efa852672f4ff31dbd8614e2bf SRA:SRR14103806 https://www.encodeproject.org/files/ENCFF047DCH/@@download/ENCFF047DCH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/1e4b4194-84f6-4dc8-8806-972386aab5b3/ENCFF047DCH.fastq.gz ENCFF953YPL bam bam unfiltered alignments GRCh38 ENCSR267NPO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1912'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2295/'], '@type': ['Target', 'Item'], 'name': 'FOXF2-human', 'label': 'FOXF2', '@id': '/targets/FOXF2-human/', 'title': 'FOXF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ab3ac416-c1d9-4882-8eee-3a58e01725d7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF928AXT/, /files/ENCFF047DCH/ 4974386943 ENCODE Processing Pipeline ec19e3a75eb9c4cb070d6e88e41b9f2e https://www.encodeproject.org/files/ENCFF953YPL/@@download/ENCFF953YPL.bam released s3://encode-public/2020/04/20/6481a159-e7cd-41af-bf27-94c0880806df/ENCFF953YPL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF572ZKE bam bam alignments GRCh38 ENCSR267NPO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1912'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2295/'], '@type': ['Target', 'Item'], 'name': 'FOXF2-human', 'label': 'FOXF2', '@id': '/targets/FOXF2-human/', 'title': 'FOXF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ab3ac416-c1d9-4882-8eee-3a58e01725d7', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF928AXT/, /files/ENCFF047DCH/ 4092697119 ENCODE Processing Pipeline 11a65104024c5622a648c4b04a022a60 https://www.encodeproject.org/files/ENCFF572ZKE/@@download/ENCFF572ZKE.bam released s3://encode-public/2020/04/20/aca77eea-b764-4a5e-b8e2-d4fc8f4d5b11/ENCFF572ZKE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF649MWJ fastq fastq reads ENCSR553YUJ Control ChIP-seq /fly-donors/ENCDO155QSS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31778/'], '@type': ['Target', 'Item'], 'name': 'org-1-dmelanogaster', 'label': 'org-1', '@id': '/targets/org-1-dmelanogaster/', 'title': 'org-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba84433e-4473-40d3-9fc8-7817056ac359', 'status': 'released'} dm3 X 8333923 8353431 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1016885366 Kevin White, UChicago 2bce271592b611bcfc304ee2677d2812 https://www.encodeproject.org/files/ENCFF649MWJ/@@download/ENCFF649MWJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/efe8c5c2-1518-456f-81e2-474abc7c1eba/ENCFF649MWJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF019QWG bam bam alignments dm3 ENCSR553YUJ Control ChIP-seq /fly-donors/ENCDO155QSS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31778/'], '@type': ['Target', 'Item'], 'name': 'org-1-dmelanogaster', 'label': 'org-1', '@id': '/targets/org-1-dmelanogaster/', 'title': 'org-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba84433e-4473-40d3-9fc8-7817056ac359', 'status': 'released'} dm3 X 8333923 8353431 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF649MWJ/, /files/ENCFF059UHX/ 1362666466 Kevin White, UChicago ef2f84bc8f4da4d9d746ab0134f7979b https://www.encodeproject.org/files/ENCFF019QWG/@@download/ENCFF019QWG.bam released s3://encode-public/2016/12/23/164e91ad-df8a-4dbd-bcf1-8eeaf6300172/ENCFF019QWG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF392LFZ bam bam alignments dm6 ENCSR553YUJ Control ChIP-seq /fly-donors/ENCDO155QSS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31778/'], '@type': ['Target', 'Item'], 'name': 'org-1-dmelanogaster', 'label': 'org-1', '@id': '/targets/org-1-dmelanogaster/', 'title': 'org-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba84433e-4473-40d3-9fc8-7817056ac359', 'status': 'released'} dm3 X 8333923 8353431 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF649MWJ/, /files/ENCFF479RCH/ 1350753092 Kevin White, UChicago 8cd3912a0b72e0e227ff71b4838939f0 https://www.encodeproject.org/files/ENCFF392LFZ/@@download/ENCFF392LFZ.bam released s3://encode-public/2016/12/23/b0b92216-d144-41b1-a065-2883862eb181/ENCFF392LFZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF847LOQ bigWig bigWig read-depth normalized signal dm3 ENCSR553YUJ Control ChIP-seq /fly-donors/ENCDO155QSS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31778/'], '@type': ['Target', 'Item'], 'name': 'org-1-dmelanogaster', 'label': 'org-1', '@id': '/targets/org-1-dmelanogaster/', 'title': 'org-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba84433e-4473-40d3-9fc8-7817056ac359', 'status': 'released'} dm3 X 8333923 8353431 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF019QWG/ 15482296 Kevin White, UChicago 27836d95ac69435747c339c2ebd38786 https://www.encodeproject.org/files/ENCFF847LOQ/@@download/ENCFF847LOQ.bigWig released s3://encode-public/2017/01/03/9e5bf9cd-4758-4d31-834c-dce677813345/ENCFF847LOQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF436SJY bigWig bigWig signal of unique reads dm3 ENCSR553YUJ Control ChIP-seq /fly-donors/ENCDO155QSS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31778/'], '@type': ['Target', 'Item'], 'name': 'org-1-dmelanogaster', 'label': 'org-1', '@id': '/targets/org-1-dmelanogaster/', 'title': 'org-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba84433e-4473-40d3-9fc8-7817056ac359', 'status': 'released'} dm3 X 8333923 8353431 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF019QWG/ 15476148 Kevin White, UChicago 5477d2705c2ffc6ba38a803b4487a4a4 https://www.encodeproject.org/files/ENCFF436SJY/@@download/ENCFF436SJY.bigWig released s3://encode-public/2017/01/03/898e8774-0ce3-4ead-b92f-92945c3feb12/ENCFF436SJY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF315SZT bigWig bigWig read-depth normalized signal dm6 ENCSR553YUJ Control ChIP-seq /fly-donors/ENCDO155QSS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31778/'], '@type': ['Target', 'Item'], 'name': 'org-1-dmelanogaster', 'label': 'org-1', '@id': '/targets/org-1-dmelanogaster/', 'title': 'org-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba84433e-4473-40d3-9fc8-7817056ac359', 'status': 'released'} dm3 X 8333923 8353431 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF392LFZ/ 17580838 Kevin White, UChicago b54cd743b0539b8009864b26d861c5e6 https://www.encodeproject.org/files/ENCFF315SZT/@@download/ENCFF315SZT.bigWig released s3://encode-public/2017/01/04/e7bdc344-c8c0-47a7-9e66-045d2c1d0e5a/ENCFF315SZT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF560ULT bigWig bigWig signal of unique reads dm6 ENCSR553YUJ Control ChIP-seq /fly-donors/ENCDO155QSS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31778/'], '@type': ['Target', 'Item'], 'name': 'org-1-dmelanogaster', 'label': 'org-1', '@id': '/targets/org-1-dmelanogaster/', 'title': 'org-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba84433e-4473-40d3-9fc8-7817056ac359', 'status': 'released'} dm3 X 8333923 8353431 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF392LFZ/ 17565495 Kevin White, UChicago 4ab7475a38ec0473efded4bec8d0e239 https://www.encodeproject.org/files/ENCFF560ULT/@@download/ENCFF560ULT.bigWig released s3://encode-public/2017/01/04/ae1fa664-81c5-4e8b-a6cf-42576fa5bbf4/ENCFF560ULT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF372UGC fastq fastq reads ENCSR778CNK Control ChIP-seq /worm-donors/ENCDO053PHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172079/'], '@type': ['Target', 'Item'], 'name': 'chd-7-celegans', 'label': 'chd-7', '@id': '/targets/chd-7-celegans/', 'title': 'chd-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1eb7c86-7210-4e8c-88a5-dc9eb183e8de', 'status': 'released'} ce11 I 4682146 4715997 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 935163304 Kevin White, UChicago 73d924ba0898efb0b0b3ae9242fe619f https://www.encodeproject.org/files/ENCFF372UGC/@@download/ENCFF372UGC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/3fb69ddd-cb44-4137-ae61-bcb4fc40d735/ENCFF372UGC.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF026ZXH bam bam alignments ce10 ENCSR778CNK Control ChIP-seq /worm-donors/ENCDO053PHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172079/'], '@type': ['Target', 'Item'], 'name': 'chd-7-celegans', 'label': 'chd-7', '@id': '/targets/chd-7-celegans/', 'title': 'chd-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1eb7c86-7210-4e8c-88a5-dc9eb183e8de', 'status': 'released'} ce11 I 4682146 4715997 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF372UGC/, /files/ENCFF987UMF/ 1227257548 Kevin White, UChicago 262a0567c23a16bb4c783d56d5800a92 https://www.encodeproject.org/files/ENCFF026ZXH/@@download/ENCFF026ZXH.bam released s3://encode-public/2016/10/04/3a8a6fe8-92f9-4ec1-941e-e4c4409262d1/ENCFF026ZXH.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF950IYW bam bam alignments ce11 ENCSR778CNK Control ChIP-seq /worm-donors/ENCDO053PHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172079/'], '@type': ['Target', 'Item'], 'name': 'chd-7-celegans', 'label': 'chd-7', '@id': '/targets/chd-7-celegans/', 'title': 'chd-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1eb7c86-7210-4e8c-88a5-dc9eb183e8de', 'status': 'released'} ce11 I 4682146 4715997 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF372UGC/, /files/ENCFF586MOL/ 1228310926 Kevin White, UChicago c727f50eaf8ab7a9dd74835e638fcd63 https://www.encodeproject.org/files/ENCFF950IYW/@@download/ENCFF950IYW.bam released s3://encode-public/2016/10/05/d56ebbec-eaf9-49c1-abd9-0f715d2b25aa/ENCFF950IYW.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF774EXH bigWig bigWig read-depth normalized signal ce10 ENCSR778CNK Control ChIP-seq /worm-donors/ENCDO053PHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172079/'], '@type': ['Target', 'Item'], 'name': 'chd-7-celegans', 'label': 'chd-7', '@id': '/targets/chd-7-celegans/', 'title': 'chd-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1eb7c86-7210-4e8c-88a5-dc9eb183e8de', 'status': 'released'} ce11 I 4682146 4715997 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF026ZXH/ 9932111 Kevin White, UChicago 882f4dc3ea438d835b577903b65da6aa https://www.encodeproject.org/files/ENCFF774EXH/@@download/ENCFF774EXH.bigWig released s3://encode-public/2016/10/06/1967a5d0-27ff-4002-9ac1-08569fc87f95/ENCFF774EXH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF089TQV bigWig bigWig signal of unique reads ce10 ENCSR778CNK Control ChIP-seq /worm-donors/ENCDO053PHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172079/'], '@type': ['Target', 'Item'], 'name': 'chd-7-celegans', 'label': 'chd-7', '@id': '/targets/chd-7-celegans/', 'title': 'chd-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1eb7c86-7210-4e8c-88a5-dc9eb183e8de', 'status': 'released'} ce11 I 4682146 4715997 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF026ZXH/ 10003062 Kevin White, UChicago 6e306a09ec018569e3c8ee373e1b2a8d https://www.encodeproject.org/files/ENCFF089TQV/@@download/ENCFF089TQV.bigWig released s3://encode-public/2016/10/06/8d6ad04f-a220-432c-bf41-bbe5656cfa99/ENCFF089TQV.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF307CXU bigWig bigWig signal of unique reads ce11 ENCSR778CNK Control ChIP-seq /worm-donors/ENCDO053PHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172079/'], '@type': ['Target', 'Item'], 'name': 'chd-7-celegans', 'label': 'chd-7', '@id': '/targets/chd-7-celegans/', 'title': 'chd-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1eb7c86-7210-4e8c-88a5-dc9eb183e8de', 'status': 'released'} ce11 I 4682146 4715997 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF950IYW/ 10003062 Kevin White, UChicago 13c84e4bb4845421464901f62deaf6ac https://www.encodeproject.org/files/ENCFF307CXU/@@download/ENCFF307CXU.bigWig released s3://encode-public/2016/10/06/eb0e22cc-0655-4068-a693-697e8c07c680/ENCFF307CXU.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF783QGD bigWig bigWig read-depth normalized signal ce11 ENCSR778CNK Control ChIP-seq /worm-donors/ENCDO053PHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172079/'], '@type': ['Target', 'Item'], 'name': 'chd-7-celegans', 'label': 'chd-7', '@id': '/targets/chd-7-celegans/', 'title': 'chd-7 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1eb7c86-7210-4e8c-88a5-dc9eb183e8de', 'status': 'released'} ce11 I 4682146 4715997 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF950IYW/ 9932114 Kevin White, UChicago d43eed4bf19427bda21b4b946291c004 https://www.encodeproject.org/files/ENCFF783QGD/@@download/ENCFF783QGD.bigWig released s3://encode-public/2016/10/06/495e67e2-7758-476c-9323-ae7f3aa81ab2/ENCFF783QGD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF633LEO fastq fastq reads ENCSR900MVH Control ChIP-seq /fly-donors/ENCDO103DIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37788/'], '@type': ['Target', 'Item'], 'name': 'PHDP-dmelanogaster', 'label': 'PHDP', '@id': '/targets/PHDP-dmelanogaster/', 'title': 'PHDP (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c467509-b392-48ad-8215-8171a06ae4ea', 'status': 'released'} dm3 2R 23873664 23895295 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1145142794 Kevin White, UChicago 507a60e70feb4f67ad6e55c881b60ddc https://www.encodeproject.org/files/ENCFF633LEO/@@download/ENCFF633LEO.fastq.gz Illumina HiSeq 4000 /files/ENCFF761PKN/ released s3://encode-public/2018/09/18/af8431f8-901e-412e-8b57-220cd34e3454/ENCFF633LEO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF553ILZ bam bam alignments dm6 ENCSR900MVH Control ChIP-seq /fly-donors/ENCDO103DIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37788/'], '@type': ['Target', 'Item'], 'name': 'PHDP-dmelanogaster', 'label': 'PHDP', '@id': '/targets/PHDP-dmelanogaster/', 'title': 'PHDP (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c467509-b392-48ad-8215-8171a06ae4ea', 'status': 'released'} dm3 2R 23873664 23895295 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF633LEO/, /files/ENCFF479RCH/ 1545476045 Kevin White, UChicago 40a2bdaa3c971c568bf33e5fd6bbaf32 https://www.encodeproject.org/files/ENCFF553ILZ/@@download/ENCFF553ILZ.bam released s3://encode-public/2018/09/19/317a802a-f515-4bfc-b72f-08729d34e945/ENCFF553ILZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF251OZL bigWig bigWig signal of unique reads dm6 ENCSR900MVH Control ChIP-seq /fly-donors/ENCDO103DIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37788/'], '@type': ['Target', 'Item'], 'name': 'PHDP-dmelanogaster', 'label': 'PHDP', '@id': '/targets/PHDP-dmelanogaster/', 'title': 'PHDP (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c467509-b392-48ad-8215-8171a06ae4ea', 'status': 'released'} dm3 2R 23873664 23895295 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF553ILZ/ 17874952 Kevin White, UChicago 0d92f92e2bb8d8fbab1e129ad93fdad9 https://www.encodeproject.org/files/ENCFF251OZL/@@download/ENCFF251OZL.bigWig released s3://encode-public/2018/09/19/0767e142-0de4-4699-a58b-1613b9577c72/ENCFF251OZL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF836DQT bigWig bigWig read-depth normalized signal dm6 ENCSR900MVH Control ChIP-seq /fly-donors/ENCDO103DIN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37788/'], '@type': ['Target', 'Item'], 'name': 'PHDP-dmelanogaster', 'label': 'PHDP', '@id': '/targets/PHDP-dmelanogaster/', 'title': 'PHDP (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2c467509-b392-48ad-8215-8171a06ae4ea', 'status': 'released'} dm3 2R 23873664 23895295 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF553ILZ/ 17812367 Kevin White, UChicago f25d9d87b0fac2848efcc47f77c998d1 https://www.encodeproject.org/files/ENCFF836DQT/@@download/ENCFF836DQT.bigWig released s3://encode-public/2018/09/19/e80dd2ab-bda9-4b79-b7ba-7167eece0923/ENCFF836DQT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF723ZIQ bam bam unfiltered alignments hg19 ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF168MST/, /files/ENCFF807MUK/, /files/ENCFF962SMK/ 6099262107 ENCODE Processing Pipeline dbfa3eaa5cc07d58fe84a2dae8d42991 https://www.encodeproject.org/files/ENCFF723ZIQ/@@download/ENCFF723ZIQ.bam released s3://encode-public/2018/02/21/6d50275f-9b56-433c-916c-96e8d0b822ff/ENCFF723ZIQ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF168MST fastq fastq reads ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF962SMK/ 2805970983 Michael Snyder, Stanford 5dec8a2b6f427a579e573efdff39aed8 SRA:SRR5112245 https://www.encodeproject.org/files/ENCFF168MST/@@download/ENCFF168MST.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/bec4c46a-4b87-4b11-8c01-f5babe2d88d6/ENCFF168MST.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF962SMK fastq fastq reads ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF168MST/ 2811699039 Michael Snyder, Stanford 8133f45ebad2b3e48e7139d7b88e5d73 SRA:SRR5112245 https://www.encodeproject.org/files/ENCFF962SMK/@@download/ENCFF962SMK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/03fbd1b4-2a2c-47e6-ba45-9c373db10807/ENCFF962SMK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF242UOG bam bam alignments hg19 ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF168MST/, /files/ENCFF807MUK/, /files/ENCFF962SMK/ 5145977303 ENCODE Processing Pipeline b1e9fa207d7d0dedeffd0fca055dd805 https://www.encodeproject.org/files/ENCFF242UOG/@@download/ENCFF242UOG.bam released s3://encode-public/2015/12/09/7d66b822-acad-450d-929e-564eb69a9315/ENCFF242UOG.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF498EYF bam bam unfiltered alignments GRCh38 ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF168MST/, /files/ENCFF643CGH/, /files/ENCFF962SMK/ 6110585796 ENCODE Processing Pipeline 10a86300359038564f85391ca032fca9 https://www.encodeproject.org/files/ENCFF498EYF/@@download/ENCFF498EYF.bam released s3://encode-public/2016/05/06/0005775d-09b7-4cfe-a583-01b48176ad15/ENCFF498EYF.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF779PRW bam bam alignments GRCh38 ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF168MST/, /files/ENCFF643CGH/, /files/ENCFF962SMK/ 5151105987 ENCODE Processing Pipeline 58ced0bd0596737939b884baca360fad https://www.encodeproject.org/files/ENCFF779PRW/@@download/ENCFF779PRW.bam released s3://encode-public/2016/05/06/6fa187c9-b30b-46f7-a4ca-254389d6bad1/ENCFF779PRW.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF317OAL bam bam unfiltered alignments GRCh38 ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF168MST/, /files/ENCFF962SMK/, /files/ENCFF110MCL/ 6026533995 ENCODE Processing Pipeline 536b8c10d326970f2be5e9b9b013c574 https://www.encodeproject.org/files/ENCFF317OAL/@@download/ENCFF317OAL.bam released s3://encode-public/2020/06/13/accf2024-5c2b-4763-ae9e-4936753caf16/ENCFF317OAL.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF024PQO bam bam alignments GRCh38 ENCSR889QUI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:CEBPB'], 'aliases': ['michael-snyder:TS-223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1051/'], '@type': ['Target', 'Item'], 'label': 'CEBPB', 'title': 'CEBPB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '664dba7f-f66c-4b46-aabb-a84058ad7571', 'schema_version': '14', 'name': 'CEBPB-human', '@id': '/targets/CEBPB-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF168MST/, /files/ENCFF962SMK/, /files/ENCFF110MCL/ 4866381983 ENCODE Processing Pipeline cf59d70c9d803e828e4938659421dcd7 https://www.encodeproject.org/files/ENCFF024PQO/@@download/ENCFF024PQO.bam released s3://encode-public/2020/06/13/7099d7d8-a755-4f2b-9bff-a11e6c0d776e/ENCFF024PQO.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF912CKH fastq fastq reads ENCSR386WUO Control ChIP-seq /fly-donors/ENCDO948RQP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40828/'], '@type': ['Target', 'Item'], 'name': 'zen-dmelanogaster', 'label': 'zen', '@id': '/targets/zen-dmelanogaster/', 'title': 'zen (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '773e4cf9-76cd-4072-8eb5-0d85965ccda1', 'status': 'released'} dm3 3R 2570826 2589601 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 828470572 Kevin White, UChicago 468f092d6b6a177141d721451d03dcb1 https://www.encodeproject.org/files/ENCFF912CKH/@@download/ENCFF912CKH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/221e9dc0-d7d0-46b3-b2c9-d7a85b759a41/ENCFF912CKH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF621CPB bam bam alignments dm6 ENCSR386WUO Control ChIP-seq /fly-donors/ENCDO948RQP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40828/'], '@type': ['Target', 'Item'], 'name': 'zen-dmelanogaster', 'label': 'zen', '@id': '/targets/zen-dmelanogaster/', 'title': 'zen (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '773e4cf9-76cd-4072-8eb5-0d85965ccda1', 'status': 'released'} dm3 3R 2570826 2589601 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF912CKH/, /files/ENCFF479RCH/ 1116253457 Kevin White, UChicago 7b9a3f185a515198e84326a8fe57a369 https://www.encodeproject.org/files/ENCFF621CPB/@@download/ENCFF621CPB.bam released s3://encode-public/2018/12/07/a9a0f1c4-aa98-436e-9861-0491a49d270a/ENCFF621CPB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF671YHS bigWig bigWig read-depth normalized signal dm6 ENCSR386WUO Control ChIP-seq /fly-donors/ENCDO948RQP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40828/'], '@type': ['Target', 'Item'], 'name': 'zen-dmelanogaster', 'label': 'zen', '@id': '/targets/zen-dmelanogaster/', 'title': 'zen (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '773e4cf9-76cd-4072-8eb5-0d85965ccda1', 'status': 'released'} dm3 3R 2570826 2589601 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF621CPB/ 17693859 Kevin White, UChicago 641f078692487f4243e82f4f69e39588 https://www.encodeproject.org/files/ENCFF671YHS/@@download/ENCFF671YHS.bigWig released s3://encode-public/2018/12/10/d1f0db13-2aaa-493a-9caa-8037ed502344/ENCFF671YHS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF929JQS bigWig bigWig signal of unique reads dm6 ENCSR386WUO Control ChIP-seq /fly-donors/ENCDO948RQP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40828/'], '@type': ['Target', 'Item'], 'name': 'zen-dmelanogaster', 'label': 'zen', '@id': '/targets/zen-dmelanogaster/', 'title': 'zen (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '773e4cf9-76cd-4072-8eb5-0d85965ccda1', 'status': 'released'} dm3 3R 2570826 2589601 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF621CPB/ 17697214 Kevin White, UChicago 5204fb6439b51edf777c055f17d21f92 https://www.encodeproject.org/files/ENCFF929JQS/@@download/ENCFF929JQS.bigWig released s3://encode-public/2018/12/10/ed433ab9-1556-41cd-a66b-aeb5b069eb56/ENCFF929JQS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF758BZX fastq fastq reads ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 850403165 Tim Reddy, Duke 9c7b381f207019ec577557cfbd3d828d SRA:SRR5093055 https://www.encodeproject.org/files/ENCFF758BZX/@@download/ENCFF758BZX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/00be9e9f-73d0-42d4-9e7e-8315dd3cce00/ENCFF758BZX.fastq.gz ENCFF477SWN fastq fastq reads ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 622054926 Tim Reddy, Duke b5ccf88601ee9fa55a60b30a272a0277 SRA:SRR5093054 https://www.encodeproject.org/files/ENCFF477SWN/@@download/ENCFF477SWN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/8c2454d4-d350-4f94-adf5-7749bfb0e36d/ENCFF477SWN.fastq.gz ENCFF987WYO fastq fastq reads ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 650475862 Tim Reddy, Duke aaebfc4b34c8f782c95c6df94dd6d4e1 SRA:SRR5093053 https://www.encodeproject.org/files/ENCFF987WYO/@@download/ENCFF987WYO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/fbc2ca23-2caf-4d61-86c8-ddb407f017ab/ENCFF987WYO.fastq.gz ENCFF601STA bam bam alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF477SWN/ 687185489 Tim Reddy, Duke 11f2e4a79812318a900e8bf6c5d765bc https://www.encodeproject.org/files/ENCFF601STA/@@download/ENCFF601STA.bam released s3://encode-public/2016/10/19/5df884ae-fa05-47d2-8230-3a423cc1cb85/ENCFF601STA.bam Lab custom GRCh38 archived ENCFF487OFB bam bam alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF758BZX/ 937600317 Tim Reddy, Duke aeafcb81e2ca1a836021e2c3236555cc https://www.encodeproject.org/files/ENCFF487OFB/@@download/ENCFF487OFB.bam released s3://encode-public/2016/10/19/c58991ed-72fa-4cd6-a647-4f631d66e5e2/ENCFF487OFB.bam Lab custom GRCh38 archived ENCFF416QUO bam bam alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF987WYO/ 741317249 Tim Reddy, Duke 9e14adbea0fb23ee4fedb638c6912236 https://www.encodeproject.org/files/ENCFF416QUO/@@download/ENCFF416QUO.bam released s3://encode-public/2016/10/19/a2ffafc2-ee3c-4884-9724-93d2ce8fbe71/ENCFF416QUO.bam Lab custom GRCh38 archived ENCFF279SFA bam bam alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF477SWN/, /files/ENCFF110MCL/ 720989013 ENCODE Processing Pipeline 557d24147bcd3771c7d981c3f30c1d11 https://www.encodeproject.org/files/ENCFF279SFA/@@download/ENCFF279SFA.bam released s3://encode-public/2020/11/13/d67008af-bd05-4ccb-9f25-5e0fdf3c043c/ENCFF279SFA.bam ENCODE4 v1.6.1 GRCh38 released ENCFF517DPQ bam bam unfiltered alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF758BZX/, /files/ENCFF110MCL/ 1152114136 ENCODE Processing Pipeline b072e217aa0c49b511f271b344a1b0bf https://www.encodeproject.org/files/ENCFF517DPQ/@@download/ENCFF517DPQ.bam released s3://encode-public/2020/11/13/8b541b40-c312-4e65-9a12-225284dd4053/ENCFF517DPQ.bam ENCODE4 v1.6.1 GRCh38 released ENCFF906AKI bam bam unfiltered alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF477SWN/, /files/ENCFF110MCL/ 849216068 ENCODE Processing Pipeline 4ec5d7ad18b474e6a335a0e1f37f7f39 https://www.encodeproject.org/files/ENCFF906AKI/@@download/ENCFF906AKI.bam released s3://encode-public/2020/11/13/5f0eaaa0-686d-414a-b57c-7fe324afba88/ENCFF906AKI.bam ENCODE4 v1.6.1 GRCh38 released ENCFF157SEM bam bam alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF987WYO/, /files/ENCFF110MCL/ 740171797 ENCODE Processing Pipeline 3d7d40c451b73593157923839553e5f4 https://www.encodeproject.org/files/ENCFF157SEM/@@download/ENCFF157SEM.bam released s3://encode-public/2020/11/13/1758990d-63a9-4edc-a514-f590ee7ee8a0/ENCFF157SEM.bam ENCODE4 v1.6.1 GRCh38 released ENCFF215SAH bam bam unfiltered alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF987WYO/, /files/ENCFF110MCL/ 931575912 ENCODE Processing Pipeline a85a4089729c9d3e91177ee2581b3cd7 https://www.encodeproject.org/files/ENCFF215SAH/@@download/ENCFF215SAH.bam released s3://encode-public/2020/11/13/1ce412d6-d153-447b-89f1-fb54c6bc9570/ENCFF215SAH.bam ENCODE4 v1.6.1 GRCh38 released ENCFF776XRO bam bam alignments GRCh38 ENCSR649JOE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 10 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF758BZX/, /files/ENCFF110MCL/ 985458872 ENCODE Processing Pipeline a58c2ece90b4e1e2e3aa3ff0c05399f9 https://www.encodeproject.org/files/ENCFF776XRO/@@download/ENCFF776XRO.bam released s3://encode-public/2020/11/13/6f6d608e-e63e-4a44-8de6-285cba7713b2/ENCFF776XRO.bam ENCODE4 v1.6.1 GRCh38 released ENCFF242CPF fastq fastq reads ENCSR370OIE Control ChIP-seq /fly-donors/ENCDO019NFL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36012/'], '@type': ['Target', 'Item'], 'name': 'CG1663-dmelanogaster', 'label': 'CG1663', '@id': '/targets/CG1663-dmelanogaster/', 'title': 'CG1663 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '94709cfc-f4e5-40ee-838e-53dd2da06e8f', 'status': 'released'} dm3 2R 9828421 9846182 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 962838586 Kevin White, UChicago 16888cea05b2fb9c6b3b750a1ef9658c https://www.encodeproject.org/files/ENCFF242CPF/@@download/ENCFF242CPF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/6fccc5a9-31fd-43c6-b20f-537702755f99/ENCFF242CPF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF260CVF bam bam alignments dm6 ENCSR370OIE Control ChIP-seq /fly-donors/ENCDO019NFL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36012/'], '@type': ['Target', 'Item'], 'name': 'CG1663-dmelanogaster', 'label': 'CG1663', '@id': '/targets/CG1663-dmelanogaster/', 'title': 'CG1663 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '94709cfc-f4e5-40ee-838e-53dd2da06e8f', 'status': 'released'} dm3 2R 9828421 9846182 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF242CPF/, /files/ENCFF479RCH/ 1265199494 Kevin White, UChicago 2c8ce66bfde805ca3e06dde1259708c5 https://www.encodeproject.org/files/ENCFF260CVF/@@download/ENCFF260CVF.bam released s3://encode-public/2018/12/07/bf3748dd-2a37-44ff-b39a-7f54aa7eb9c2/ENCFF260CVF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF963RWN bigWig bigWig signal of unique reads dm6 ENCSR370OIE Control ChIP-seq /fly-donors/ENCDO019NFL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36012/'], '@type': ['Target', 'Item'], 'name': 'CG1663-dmelanogaster', 'label': 'CG1663', '@id': '/targets/CG1663-dmelanogaster/', 'title': 'CG1663 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '94709cfc-f4e5-40ee-838e-53dd2da06e8f', 'status': 'released'} dm3 2R 9828421 9846182 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF260CVF/ 17729084 Kevin White, UChicago 2e8d38479e9af2149b1c14bab2f8d21e https://www.encodeproject.org/files/ENCFF963RWN/@@download/ENCFF963RWN.bigWig released s3://encode-public/2018/12/10/15c88f3c-9fc2-42bc-9290-5c4d949db2de/ENCFF963RWN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF743GMY bigWig bigWig read-depth normalized signal dm6 ENCSR370OIE Control ChIP-seq /fly-donors/ENCDO019NFL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36012/'], '@type': ['Target', 'Item'], 'name': 'CG1663-dmelanogaster', 'label': 'CG1663', '@id': '/targets/CG1663-dmelanogaster/', 'title': 'CG1663 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '94709cfc-f4e5-40ee-838e-53dd2da06e8f', 'status': 'released'} dm3 2R 9828421 9846182 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF260CVF/ 17757319 Kevin White, UChicago 8f803d747e728d5e7797372154bf8b39 https://www.encodeproject.org/files/ENCFF743GMY/@@download/ENCFF743GMY.bigWig released s3://encode-public/2018/12/10/24332b7e-11c1-4f9a-bc52-04bd33d43495/ENCFF743GMY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF104PIL fastq fastq reads ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF862OLB/ 2834600140 Michael Snyder, Stanford 49718ecbcbf4bec2bf00536647054d3e SRA:SRR6212661 https://www.encodeproject.org/files/ENCFF104PIL/@@download/ENCFF104PIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/06/d2849ffa-32e4-45e7-a426-2eb8434e3f85/ENCFF104PIL.fastq.gz ENCFF862OLB fastq fastq reads ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF104PIL/ 3321023854 Michael Snyder, Stanford d265397b7caab3f3beb803e3bc627f86 SRA:SRR6212661 https://www.encodeproject.org/files/ENCFF862OLB/@@download/ENCFF862OLB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/06/e08ff52b-539d-4c98-a38d-0d8fc5e6e4a9/ENCFF862OLB.fastq.gz ENCFF802DYP bam bam unfiltered alignments hg19 ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF862OLB/, /files/ENCFF104PIL/ 5926603547 ENCODE Processing Pipeline 7d1b87c650a731722badde5063c58fc5 https://www.encodeproject.org/files/ENCFF802DYP/@@download/ENCFF802DYP.bam released s3://encode-public/2016/12/10/81847e17-d524-4e75-9e2a-d28e433d7b58/ENCFF802DYP.bam ENCODE3 hg19 archived ENCFF561ZZE bam bam alignments hg19 ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF862OLB/, /files/ENCFF104PIL/ 4731257854 ENCODE Processing Pipeline b91451951f36990e1190b88086d1e75d https://www.encodeproject.org/files/ENCFF561ZZE/@@download/ENCFF561ZZE.bam released s3://encode-public/2016/12/10/eda149f7-d2f0-47ab-88a2-d78da9673d70/ENCFF561ZZE.bam ENCODE3 hg19 archived ENCFF758BPU bam bam unfiltered alignments GRCh38 ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF862OLB/, /files/ENCFF104PIL/ 5936243701 ENCODE Processing Pipeline 24bfbdd7eb2eaad35de7e7ec40b18592 https://www.encodeproject.org/files/ENCFF758BPU/@@download/ENCFF758BPU.bam released s3://encode-public/2016/12/10/ab2a37f8-6487-43aa-abc7-3b124588bd7c/ENCFF758BPU.bam ENCODE3 GRCh38 archived ENCFF951HNT bam bam alignments GRCh38 ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF862OLB/, /files/ENCFF104PIL/ 4738298053 ENCODE Processing Pipeline 2f44c777bfd0b94eef67d40f2f36d3ef https://www.encodeproject.org/files/ENCFF951HNT/@@download/ENCFF951HNT.bam released s3://encode-public/2016/12/10/e06c7949-0a69-41ba-b2f9-9a4f77e0ec5b/ENCFF951HNT.bam ENCODE3 GRCh38 archived ENCFF454WFD bam bam unfiltered alignments GRCh38 ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF104PIL/, /files/ENCFF862OLB/ 5919663411 ENCODE Processing Pipeline 2ce5b48b640da37a4217d2cb6415a140 https://www.encodeproject.org/files/ENCFF454WFD/@@download/ENCFF454WFD.bam released s3://encode-public/2020/06/03/55283f06-7e8e-46a8-bebb-8ff3a856f245/ENCFF454WFD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF781RWW bam bam alignments GRCh38 ENCSR036LUN Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000473 testis tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF104PIL/, /files/ENCFF862OLB/ 4619224248 ENCODE Processing Pipeline 8f88b948eae4c1a240ebbfc3f36e3704 https://www.encodeproject.org/files/ENCFF781RWW/@@download/ENCFF781RWW.bam released s3://encode-public/2020/06/03/1fe1fa61-44f0-4b96-8cb6-f6acf7cbcccd/ENCFF781RWW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF024EUM fastq fastq reads ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF108WLC/ 2513226524 Michael Snyder, Stanford 273c2bf7558129429f4b8233364ada94 SRA:SRR6213096 https://www.encodeproject.org/files/ENCFF024EUM/@@download/ENCFF024EUM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/41350ad5-5292-421e-a72d-b3344ef11a72/ENCFF024EUM.fastq.gz mild to moderate bottlenecking ENCFF108WLC fastq fastq reads ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF024EUM/ 2997081152 Michael Snyder, Stanford de9147d2ecefe3df8c62ee1f4ac3ca8a SRA:SRR6213096 https://www.encodeproject.org/files/ENCFF108WLC/@@download/ENCFF108WLC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/15ebe4f8-b688-4753-8aa2-d545bbec1143/ENCFF108WLC.fastq.gz mild to moderate bottlenecking ENCFF035RBP bam bam unfiltered alignments hg19 ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF108WLC/, /files/ENCFF024EUM/ 5312827121 ENCODE Processing Pipeline d96b6fb021b6ee45b7b8bf3ee3cf409a https://www.encodeproject.org/files/ENCFF035RBP/@@download/ENCFF035RBP.bam released s3://encode-public/2017/03/23/9dfb948c-cd79-49b0-8905-9529bb426d35/ENCFF035RBP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF818UIH bam bam unfiltered alignments GRCh38 ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF108WLC/, /files/ENCFF024EUM/ 5321586672 ENCODE Processing Pipeline ea2751906dafefabcdc6ac6ff2411c7a https://www.encodeproject.org/files/ENCFF818UIH/@@download/ENCFF818UIH.bam released s3://encode-public/2017/03/23/961b35bb-7ed6-4e96-8c28-0e4da76b0206/ENCFF818UIH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF869LQO bam bam alignments hg19 ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF108WLC/, /files/ENCFF024EUM/ 4149319273 ENCODE Processing Pipeline 14f4d6e4c6583e1de7e0d17921c64e24 https://www.encodeproject.org/files/ENCFF869LQO/@@download/ENCFF869LQO.bam released s3://encode-public/2017/03/23/ea430eab-3e0d-4c61-a018-77e181fc9533/ENCFF869LQO.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF527GPC bam bam alignments GRCh38 ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF108WLC/, /files/ENCFF024EUM/ 4155107991 ENCODE Processing Pipeline f5aa15b93a0f917e84642d7f94fc99b1 https://www.encodeproject.org/files/ENCFF527GPC/@@download/ENCFF527GPC.bam released s3://encode-public/2017/03/23/5fd5c4be-b8a5-4712-bcd2-4628f2172c8f/ENCFF527GPC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF366SPV bam bam unfiltered alignments GRCh38 ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF024EUM/, /files/ENCFF108WLC/ 5311735966 ENCODE Processing Pipeline 2994cb07bb3452ec2d6c23471d6deed7 https://www.encodeproject.org/files/ENCFF366SPV/@@download/ENCFF366SPV.bam released s3://encode-public/2020/06/03/cbdafca7-bb41-4e4c-a04f-13aaf3156c0a/ENCFF366SPV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF774VLR bam bam alignments GRCh38 ENCSR015WSU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF024EUM/, /files/ENCFF108WLC/ 4070445004 ENCODE Processing Pipeline 4513db7a122d8266462f2167a518ac8a https://www.encodeproject.org/files/ENCFF774VLR/@@download/ENCFF774VLR.bam released s3://encode-public/2020/06/03/3aacbe8b-dad4-4809-beb9-639fee50cbfb/ENCFF774VLR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF296XTO fastq fastq reads ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 673001613 Tim Reddy, Duke 9531ea34622b88bacf183cf6b28a67f6 SRA:SRR5093095 https://www.encodeproject.org/files/ENCFF296XTO/@@download/ENCFF296XTO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/94ea178e-fd2d-4630-b4f9-0dfa6e65df29/ENCFF296XTO.fastq.gz ENCFF868ECK fastq fastq reads ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 786058958 Tim Reddy, Duke 76a8421ec62c896347c5e8f87b255a71 SRA:SRR5093093 https://www.encodeproject.org/files/ENCFF868ECK/@@download/ENCFF868ECK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/97ebcc3d-302d-4f4f-86bc-4de5cacf276d/ENCFF868ECK.fastq.gz ENCFF748IJX fastq fastq reads ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 691920854 Tim Reddy, Duke b660a8c6ed131b1fd45dc993b32a389d SRA:SRR5093094 https://www.encodeproject.org/files/ENCFF748IJX/@@download/ENCFF748IJX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/675dfae6-2743-4f10-ab21-fdd259c358d9/ENCFF748IJX.fastq.gz ENCFF503AJR bam bam alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF868ECK/ 861779028 Tim Reddy, Duke e5e096eeb40a493f0c508ef17c7297b1 https://www.encodeproject.org/files/ENCFF503AJR/@@download/ENCFF503AJR.bam released s3://encode-public/2016/10/19/f01a31f2-5fc0-4a98-9f58-0b867f6e067a/ENCFF503AJR.bam Lab custom GRCh38 archived ENCFF831MPX bam bam alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF296XTO/ 737221315 Tim Reddy, Duke 48f6afd645c1fdb4f9df51aca0a14722 https://www.encodeproject.org/files/ENCFF831MPX/@@download/ENCFF831MPX.bam released s3://encode-public/2016/10/19/335bdf5a-7636-4cb2-9d5a-6fdc1df8f654/ENCFF831MPX.bam Lab custom GRCh38 archived ENCFF323WQM bam bam alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF748IJX/ 769155157 Tim Reddy, Duke 58c88f4dd7033926f97084389d9cff97 https://www.encodeproject.org/files/ENCFF323WQM/@@download/ENCFF323WQM.bam released s3://encode-public/2016/10/19/e0dac42a-09c6-4f18-930e-9e65d2b87c07/ENCFF323WQM.bam Lab custom GRCh38 archived ENCFF432HFR bam bam alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF296XTO/, /files/ENCFF110MCL/ 774147106 ENCODE Processing Pipeline b9646d2e334a9811788631f4e98b478c https://www.encodeproject.org/files/ENCFF432HFR/@@download/ENCFF432HFR.bam released s3://encode-public/2020/11/13/0441b8e7-50f5-4054-88f8-5074b6b0ddbf/ENCFF432HFR.bam ENCODE4 v1.6.1 GRCh38 released ENCFF807SOG bam bam alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF868ECK/ 906511988 ENCODE Processing Pipeline fc2c125a166cc8be77e1eea744759c7a https://www.encodeproject.org/files/ENCFF807SOG/@@download/ENCFF807SOG.bam released s3://encode-public/2020/11/13/3e7d25b0-5136-45d8-9f52-c1cd2d40a7e9/ENCFF807SOG.bam ENCODE4 v1.6.1 GRCh38 released ENCFF170BDP bam bam alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF748IJX/, /files/ENCFF110MCL/ 804541608 ENCODE Processing Pipeline fe66e1e63e8b0a409c60a273ef73ffca https://www.encodeproject.org/files/ENCFF170BDP/@@download/ENCFF170BDP.bam released s3://encode-public/2020/11/13/93a1d8c2-a548-4376-8087-8e939879046b/ENCFF170BDP.bam ENCODE4 v1.6.1 GRCh38 released ENCFF487WOM bam bam unfiltered alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF296XTO/, /files/ENCFF110MCL/ 910555673 ENCODE Processing Pipeline e09cb24e4dcb50704601ef6163a059e7 https://www.encodeproject.org/files/ENCFF487WOM/@@download/ENCFF487WOM.bam released s3://encode-public/2020/11/13/026d0194-b647-4aa9-a60f-367c9a274af0/ENCFF487WOM.bam ENCODE4 v1.6.1 GRCh38 released ENCFF203CCT bam bam unfiltered alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF868ECK/ 1077987998 ENCODE Processing Pipeline e765b016cc8dad12398b658d7ce11bc9 https://www.encodeproject.org/files/ENCFF203CCT/@@download/ENCFF203CCT.bam released s3://encode-public/2020/11/13/1b40d7fc-34fb-4734-a180-451fd12d1816/ENCFF203CCT.bam ENCODE4 v1.6.1 GRCh38 released ENCFF575KPB bam bam unfiltered alignments GRCh38 ENCSR711MVL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 3 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF748IJX/, /files/ENCFF110MCL/ 945122114 ENCODE Processing Pipeline 36c4715669dfd113993e9f0aa8f226f9 https://www.encodeproject.org/files/ENCFF575KPB/@@download/ENCFF575KPB.bam released s3://encode-public/2020/11/13/6e8c2726-59fa-4ee9-b65f-0d4e0526c5ad/ENCFF575KPB.bam ENCODE4 v1.6.1 GRCh38 released ENCFF420BVQ bam bam unfiltered alignments hg19 ENCSR931XKA Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/687/'], '@type': ['Target', 'Item'], 'name': 'KLF9-human', 'label': 'KLF9', '@id': '/targets/KLF9-human/', 'title': 'KLF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3b273ba-d78f-4ed5-b6d6-6a3c57461337', 'status': 'released'} hg19 9 72977475 73202397 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF608KKT/ 982768008 ENCODE Processing Pipeline 407cab4b4e7372b09667a00d4c49b4ff https://www.encodeproject.org/files/ENCFF420BVQ/@@download/ENCFF420BVQ.bam released s3://encode-public/2018/02/22/9b72a503-acf8-441a-85ac-7bced2b51a17/ENCFF420BVQ.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF608KKT fastq fastq reads ENCSR931XKA Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/687/'], '@type': ['Target', 'Item'], 'name': 'KLF9-human', 'label': 'KLF9', '@id': '/targets/KLF9-human/', 'title': 'KLF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3b273ba-d78f-4ed5-b6d6-6a3c57461337', 'status': 'released'} hg19 9 72977475 73202397 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 879626274 Kevin White, UChicago 54c03101dd57f488f54058cbdec9e6ad SRA:SRR6214037 https://www.encodeproject.org/files/ENCFF608KKT/@@download/ENCFF608KKT.fastq.gz Illumina HiSeq 2500 /files/ENCFF787HQI/ released s3://encode-public/2016/03/14/f7f44da9-a045-4365-b297-11bf6f31ac94/ENCFF608KKT.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF005EDF bam bam alignments hg19 ENCSR931XKA Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/687/'], '@type': ['Target', 'Item'], 'name': 'KLF9-human', 'label': 'KLF9', '@id': '/targets/KLF9-human/', 'title': 'KLF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3b273ba-d78f-4ed5-b6d6-6a3c57461337', 'status': 'released'} hg19 9 72977475 73202397 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF608KKT/ 782155488 ENCODE Processing Pipeline 48a3ac4bbfae9af362915f8caf9e674b https://www.encodeproject.org/files/ENCFF005EDF/@@download/ENCFF005EDF.bam released s3://encode-public/2016/04/23/8c0fc4ab-6ccf-492f-9909-c1d4f38e13f5/ENCFF005EDF.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF091CWD bam bam unfiltered alignments GRCh38 ENCSR931XKA Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/687/'], '@type': ['Target', 'Item'], 'name': 'KLF9-human', 'label': 'KLF9', '@id': '/targets/KLF9-human/', 'title': 'KLF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3b273ba-d78f-4ed5-b6d6-6a3c57461337', 'status': 'released'} hg19 9 72977475 73202397 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF608KKT/ 987368473 ENCODE Processing Pipeline 320dfc7287d5e67f6c9ef9dd50da8bfe https://www.encodeproject.org/files/ENCFF091CWD/@@download/ENCFF091CWD.bam released s3://encode-public/2016/05/06/300130fd-cf4f-46ab-89c1-a1ccc8f66444/ENCFF091CWD.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF938UEI bam bam alignments GRCh38 ENCSR931XKA Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/687/'], '@type': ['Target', 'Item'], 'name': 'KLF9-human', 'label': 'KLF9', '@id': '/targets/KLF9-human/', 'title': 'KLF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3b273ba-d78f-4ed5-b6d6-6a3c57461337', 'status': 'released'} hg19 9 72977475 73202397 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF608KKT/ 781817776 ENCODE Processing Pipeline 448363f6fec5ccc1d992db357b6215e8 https://www.encodeproject.org/files/ENCFF938UEI/@@download/ENCFF938UEI.bam released s3://encode-public/2016/05/06/51466f55-5146-4251-86e4-1acb8571bd99/ENCFF938UEI.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF348UZK bam bam unfiltered alignments GRCh38 ENCSR931XKA Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/687/'], '@type': ['Target', 'Item'], 'name': 'KLF9-human', 'label': 'KLF9', '@id': '/targets/KLF9-human/', 'title': 'KLF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3b273ba-d78f-4ed5-b6d6-6a3c57461337', 'status': 'released'} hg19 9 72977475 73202397 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF608KKT/ 981633914 ENCODE Processing Pipeline 44314c9c26eb5a17f5a2368b1aa29c00 https://www.encodeproject.org/files/ENCFF348UZK/@@download/ENCFF348UZK.bam released s3://encode-public/2020/10/27/e9b8934a-8104-47c3-ad19-6e332fae943d/ENCFF348UZK.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF670LIV bam bam alignments GRCh38 ENCSR931XKA Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/687/'], '@type': ['Target', 'Item'], 'name': 'KLF9-human', 'label': 'KLF9', '@id': '/targets/KLF9-human/', 'title': 'KLF9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3b273ba-d78f-4ed5-b6d6-6a3c57461337', 'status': 'released'} hg19 9 72977475 73202397 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF608KKT/ 830712200 ENCODE Processing Pipeline b6a946a151443dc98e30a74cb435070a https://www.encodeproject.org/files/ENCFF670LIV/@@download/ENCFF670LIV.bam released s3://encode-public/2020/10/27/c77f540a-df3b-424c-a49e-fde168b52eb0/ENCFF670LIV.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF547ERQ fastq fastq reads ENCSR216KNP Control ChIP-seq /fly-donors/ENCDO458WCC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32266/'], '@type': ['Target', 'Item'], 'name': 'CG4318-dmelanogaster', 'label': 'CG4318', '@id': '/targets/CG4318-dmelanogaster/', 'title': 'CG4318 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20c48506-f0ef-4c37-9dfe-b53a3a953ecb', 'status': 'released'} dm3 X 13031574 13052086 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 752200247 Kevin White, UChicago 8d8bb018f7cb42755aa63ca68689e474 https://www.encodeproject.org/files/ENCFF547ERQ/@@download/ENCFF547ERQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/2f9eacdf-da1f-43dc-90b9-df00f4cd4384/ENCFF547ERQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF509ZPA bam bam alignments dm3 ENCSR216KNP Control ChIP-seq /fly-donors/ENCDO458WCC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32266/'], '@type': ['Target', 'Item'], 'name': 'CG4318-dmelanogaster', 'label': 'CG4318', '@id': '/targets/CG4318-dmelanogaster/', 'title': 'CG4318 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20c48506-f0ef-4c37-9dfe-b53a3a953ecb', 'status': 'released'} dm3 X 13031574 13052086 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF547ERQ/, /files/ENCFF059UHX/ 1006297612 Kevin White, UChicago 1bdd5a24e81be556f753b06e8bd51d1a https://www.encodeproject.org/files/ENCFF509ZPA/@@download/ENCFF509ZPA.bam released s3://encode-public/2016/12/22/c49b6e35-7145-4962-bac3-5512ac0169c5/ENCFF509ZPA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF100VBH bam bam alignments dm6 ENCSR216KNP Control ChIP-seq /fly-donors/ENCDO458WCC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32266/'], '@type': ['Target', 'Item'], 'name': 'CG4318-dmelanogaster', 'label': 'CG4318', '@id': '/targets/CG4318-dmelanogaster/', 'title': 'CG4318 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20c48506-f0ef-4c37-9dfe-b53a3a953ecb', 'status': 'released'} dm3 X 13031574 13052086 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF547ERQ/, /files/ENCFF479RCH/ 1003454327 Kevin White, UChicago 29623358fe3bb2da6972a43f8d447487 https://www.encodeproject.org/files/ENCFF100VBH/@@download/ENCFF100VBH.bam released s3://encode-public/2016/12/22/4570bc53-a44e-41d2-b106-5280c8dd148b/ENCFF100VBH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF250TKP bigWig bigWig read-depth normalized signal dm3 ENCSR216KNP Control ChIP-seq /fly-donors/ENCDO458WCC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32266/'], '@type': ['Target', 'Item'], 'name': 'CG4318-dmelanogaster', 'label': 'CG4318', '@id': '/targets/CG4318-dmelanogaster/', 'title': 'CG4318 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20c48506-f0ef-4c37-9dfe-b53a3a953ecb', 'status': 'released'} dm3 X 13031574 13052086 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF509ZPA/ 15414538 Kevin White, UChicago 9bb767370753ad2072442ad17ba3b932 https://www.encodeproject.org/files/ENCFF250TKP/@@download/ENCFF250TKP.bigWig released s3://encode-public/2017/01/04/e609fda7-e1d7-48f3-a61b-0ebc218a3a3f/ENCFF250TKP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF558VLM bigWig bigWig signal of unique reads dm3 ENCSR216KNP Control ChIP-seq /fly-donors/ENCDO458WCC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32266/'], '@type': ['Target', 'Item'], 'name': 'CG4318-dmelanogaster', 'label': 'CG4318', '@id': '/targets/CG4318-dmelanogaster/', 'title': 'CG4318 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20c48506-f0ef-4c37-9dfe-b53a3a953ecb', 'status': 'released'} dm3 X 13031574 13052086 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF509ZPA/ 15407950 Kevin White, UChicago 9621997f13fe316391c66bb26b8a23aa https://www.encodeproject.org/files/ENCFF558VLM/@@download/ENCFF558VLM.bigWig released s3://encode-public/2017/01/04/f56c1cf2-b56e-4705-ac9d-90d425d3986e/ENCFF558VLM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF179KAB bigWig bigWig read-depth normalized signal dm6 ENCSR216KNP Control ChIP-seq /fly-donors/ENCDO458WCC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32266/'], '@type': ['Target', 'Item'], 'name': 'CG4318-dmelanogaster', 'label': 'CG4318', '@id': '/targets/CG4318-dmelanogaster/', 'title': 'CG4318 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20c48506-f0ef-4c37-9dfe-b53a3a953ecb', 'status': 'released'} dm3 X 13031574 13052086 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF100VBH/ 17482794 Kevin White, UChicago 5abb8ab9401c910ae3ebde0490e3ca67 https://www.encodeproject.org/files/ENCFF179KAB/@@download/ENCFF179KAB.bigWig released s3://encode-public/2017/01/04/fc164fd5-1b57-4134-b472-88078e9f4d2f/ENCFF179KAB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF563ULI bigWig bigWig signal of unique reads dm6 ENCSR216KNP Control ChIP-seq /fly-donors/ENCDO458WCC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32266/'], '@type': ['Target', 'Item'], 'name': 'CG4318-dmelanogaster', 'label': 'CG4318', '@id': '/targets/CG4318-dmelanogaster/', 'title': 'CG4318 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '20c48506-f0ef-4c37-9dfe-b53a3a953ecb', 'status': 'released'} dm3 X 13031574 13052086 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF100VBH/ 17469487 Kevin White, UChicago a08f09940288791fc5327f07d2db220f https://www.encodeproject.org/files/ENCFF563ULI/@@download/ENCFF563ULI.bigWig released s3://encode-public/2017/01/04/be810319-1e9f-4711-b2f6-e51d9eebe3fd/ENCFF563ULI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF367YSE fastq fastq reads ENCSR627BZD Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-760'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/163071/'], '@type': ['Target', 'Item'], 'name': 'ZNF114-human', 'label': 'ZNF114', '@id': '/targets/ZNF114-human/', 'title': 'ZNF114 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ea9e2101-bfd5-4a34-8bd4-0907117365af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF142DGD/ 2570177466 Michael Snyder, Stanford 243ab664915ca9e490cf270eefb50149 SRA:SRR14107698 https://www.encodeproject.org/files/ENCFF367YSE/@@download/ENCFF367YSE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/e171d0a2-50b9-446e-8d17-14fa9f69c425/ENCFF367YSE.fastq.gz mild to moderate bottlenecking ENCFF142DGD fastq fastq reads ENCSR627BZD Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-760'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/163071/'], '@type': ['Target', 'Item'], 'name': 'ZNF114-human', 'label': 'ZNF114', '@id': '/targets/ZNF114-human/', 'title': 'ZNF114 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ea9e2101-bfd5-4a34-8bd4-0907117365af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF367YSE/ 2833872422 Michael Snyder, Stanford c93c7be973ca9138d4ffbf7dc3811d9d SRA:SRR14107698 https://www.encodeproject.org/files/ENCFF142DGD/@@download/ENCFF142DGD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/83970d58-d833-4499-83a2-8502e8b50974/ENCFF142DGD.fastq.gz mild to moderate bottlenecking ENCFF903LWZ bam bam alignments GRCh38 ENCSR627BZD Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-760'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/163071/'], '@type': ['Target', 'Item'], 'name': 'ZNF114-human', 'label': 'ZNF114', '@id': '/targets/ZNF114-human/', 'title': 'ZNF114 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ea9e2101-bfd5-4a34-8bd4-0907117365af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF367YSE/, /files/ENCFF142DGD/ 3923669440 ENCODE Processing Pipeline 1f23a30f19a9cbdf3eb60cc19153410e https://www.encodeproject.org/files/ENCFF903LWZ/@@download/ENCFF903LWZ.bam released s3://encode-public/2020/04/21/d4a5f494-f95c-41dc-9595-32e3800eae6d/ENCFF903LWZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF231MIO bam bam unfiltered alignments GRCh38 ENCSR627BZD Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-760'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/163071/'], '@type': ['Target', 'Item'], 'name': 'ZNF114-human', 'label': 'ZNF114', '@id': '/targets/ZNF114-human/', 'title': 'ZNF114 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ea9e2101-bfd5-4a34-8bd4-0907117365af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF367YSE/, /files/ENCFF142DGD/ 5086634135 ENCODE Processing Pipeline 957abade32ac76f3b87d9b374b549e86 https://www.encodeproject.org/files/ENCFF231MIO/@@download/ENCFF231MIO.bam released s3://encode-public/2020/04/21/fd57ad91-47a7-4f1f-bb65-cb3530e592f7/ENCFF231MIO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF301IUQ fastq fastq reads ENCSR012KTG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF854PPV/ 2173107260 Michael Snyder, Stanford 2faf5bdb7095217eeadaf11f2b7fe0e5 SRA:SRR14103078 https://www.encodeproject.org/files/ENCFF301IUQ/@@download/ENCFF301IUQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/df595a0d-2ae1-4e7e-953a-8be4df89a10a/ENCFF301IUQ.fastq.gz ENCFF854PPV fastq fastq reads ENCSR012KTG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF301IUQ/ 2521329513 Michael Snyder, Stanford 7edeee3072e0b9fa03f6e533acb55f26 SRA:SRR14103078 https://www.encodeproject.org/files/ENCFF854PPV/@@download/ENCFF854PPV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/88c38eca-04b6-423d-b3c9-6aee747fb993/ENCFF854PPV.fastq.gz ENCFF704UTO bam bam unfiltered alignments GRCh38 ENCSR012KTG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF301IUQ/, /files/ENCFF854PPV/ 4808801658 ENCODE Processing Pipeline cc99fc4242a2e347dc2aac85448e45e4 https://www.encodeproject.org/files/ENCFF704UTO/@@download/ENCFF704UTO.bam released s3://encode-public/2020/04/21/0a931948-90b2-42eb-9f40-7b16cbc3088b/ENCFF704UTO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF948XBN bam bam alignments GRCh38 ENCSR012KTG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF301IUQ/, /files/ENCFF854PPV/ 3902971607 ENCODE Processing Pipeline 8f0bcaf14dadfa29aa9a06bf15f42040 https://www.encodeproject.org/files/ENCFF948XBN/@@download/ENCFF948XBN.bam released s3://encode-public/2020/04/21/ba99cf36-1627-49fc-8658-2eae0f4c5155/ENCFF948XBN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF258KRY bam bam unfiltered alignments hg19 ENCSR829NNQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90321/'], '@type': ['Target', 'Item'], 'name': 'ZNF766-human', 'label': 'ZNF766', '@id': '/targets/ZNF766-human/', 'title': 'ZNF766 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ce60f5e5-eecb-4d86-a846-5c9c2f368119', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF864QSY/, /files/ENCFF807MUK/, /files/ENCFF647SGY/ 1212787495 ENCODE Processing Pipeline 8b3b2c71261efddcaacc38fa5bc967f2 https://www.encodeproject.org/files/ENCFF258KRY/@@download/ENCFF258KRY.bam released s3://encode-public/2018/02/22/58034902-8826-41ac-833c-f6fadfcb4a38/ENCFF258KRY.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF647SGY fastq fastq reads ENCSR829NNQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90321/'], '@type': ['Target', 'Item'], 'name': 'ZNF766-human', 'label': 'ZNF766', '@id': '/targets/ZNF766-human/', 'title': 'ZNF766 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ce60f5e5-eecb-4d86-a846-5c9c2f368119', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 943490061 Kevin White, UChicago d4c6cfacd58874f8fbfdaa791f996a76 SRA:SRR6214047 https://www.encodeproject.org/files/ENCFF647SGY/@@download/ENCFF647SGY.fastq.gz Illumina HiSeq 2500 /files/ENCFF159WTO/ released s3://encode-public/2016/03/14/ec604e3d-9641-4599-83a9-f34a21ba7a09/ENCFF647SGY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF864QSY fastq fastq reads ENCSR829NNQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90321/'], '@type': ['Target', 'Item'], 'name': 'ZNF766-human', 'label': 'ZNF766', '@id': '/targets/ZNF766-human/', 'title': 'ZNF766 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ce60f5e5-eecb-4d86-a846-5c9c2f368119', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 175734774 Kevin White, UChicago 2b468937cfddadcfbf8aab597a823eba SRA:SRR6214048 https://www.encodeproject.org/files/ENCFF864QSY/@@download/ENCFF864QSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF159WTO/ released s3://encode-public/2016/03/22/af67efa1-6b45-4932-bab6-cb6a070352dd/ENCFF864QSY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF754ZXY bam bam alignments hg19 ENCSR829NNQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90321/'], '@type': ['Target', 'Item'], 'name': 'ZNF766-human', 'label': 'ZNF766', '@id': '/targets/ZNF766-human/', 'title': 'ZNF766 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ce60f5e5-eecb-4d86-a846-5c9c2f368119', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF864QSY/, /files/ENCFF807MUK/, /files/ENCFF647SGY/ 950313463 ENCODE Processing Pipeline c70355520d1d1cd08a25c947e5bc554f https://www.encodeproject.org/files/ENCFF754ZXY/@@download/ENCFF754ZXY.bam released s3://encode-public/2016/04/23/7a52a2d9-48b5-40d0-98b6-5ded575a9ed1/ENCFF754ZXY.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF414ROR bam bam unfiltered alignments GRCh38 ENCSR829NNQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90321/'], '@type': ['Target', 'Item'], 'name': 'ZNF766-human', 'label': 'ZNF766', '@id': '/targets/ZNF766-human/', 'title': 'ZNF766 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ce60f5e5-eecb-4d86-a846-5c9c2f368119', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF864QSY/, /files/ENCFF643CGH/, /files/ENCFF647SGY/ 1216785911 ENCODE Processing Pipeline e0aed188df8fe4f7e35213a7f7371f2e https://www.encodeproject.org/files/ENCFF414ROR/@@download/ENCFF414ROR.bam released s3://encode-public/2016/05/06/d952047b-047d-4516-a813-2d13cd484357/ENCFF414ROR.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF321YGO bam bam alignments GRCh38 ENCSR829NNQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90321/'], '@type': ['Target', 'Item'], 'name': 'ZNF766-human', 'label': 'ZNF766', '@id': '/targets/ZNF766-human/', 'title': 'ZNF766 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ce60f5e5-eecb-4d86-a846-5c9c2f368119', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF864QSY/, /files/ENCFF643CGH/, /files/ENCFF647SGY/ 949770005 ENCODE Processing Pipeline 4677dff199e51493277a8d3b3f62c4be https://www.encodeproject.org/files/ENCFF321YGO/@@download/ENCFF321YGO.bam released s3://encode-public/2016/05/06/e79280f4-9ce5-4396-9e94-55ea54665d0f/ENCFF321YGO.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF538LGB bam bam unfiltered alignments GRCh38 ENCSR829NNQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-949'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90321/'], '@type': ['Target', 'Item'], 'name': 'ZNF766-human', 'label': 'ZNF766', '@id': '/targets/ZNF766-human/', 'title': 'ZNF766 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ce60f5e5-eecb-4d86-a846-5c9c2f368119', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF864QSY/, /files/ENCFF110MCL/, /files/ENCFF647SGY/ 986642615 ENCODE Processing Pipeline dff1236a4cc1e78eeee083f499a85c87 https://www.encodeproject.org/files/ENCFF112WWP/@@download/ENCFF112WWP.bam released s3://encode-public/2020/10/27/3bdb3d77-4ab0-4e1f-8a5b-6885f201851f/ENCFF112WWP.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF518TYQ tagAlign tagAlign alignments hg19 ENCSR694AEQ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF434FMH/ 301751999 Anshul Kundaje, Stanford 9578f71ecb8f19e2c0774e83e290c216 https://www.encodeproject.org/files/ENCFF518TYQ/@@download/ENCFF518TYQ.tagAlign.gz archived s3://encode-public/2016/03/30/d84f2209-6a30-4d6a-b728-19c10df589c6/ENCFF518TYQ.tagAlign.gz Lab custom hg19 archived low read length ENCFF434FMH fastq fastq reads ENCSR694AEQ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2440722884 Zhiping Weng, UMass f008f62a2f36689d827eedcd26f4af42 SRA:SRR453237 https://www.encodeproject.org/files/ENCFF434FMH/@@download/ENCFF434FMH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/03b5757a-d8f0-4ed3-ad6f-3de611d1f5c8/ENCFF434FMH.fastq.gz low read length ENCFF818XRC bam bam unfiltered alignments GRCh38 ENCSR694AEQ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF434FMH/ 2880205240 ENCODE Processing Pipeline cd49a0f6283f9465f4e77f7736755282 https://www.encodeproject.org/files/ENCFF818XRC/@@download/ENCFF818XRC.bam released s3://encode-public/2020/10/09/7c5bec2f-74d5-4805-826e-f7869676e291/ENCFF818XRC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF322OQS bam bam alignments GRCh38 ENCSR694AEQ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF434FMH/ 1940096425 ENCODE Processing Pipeline b4c11d67f6393d69ccfad137f49bbaeb https://www.encodeproject.org/files/ENCFF322OQS/@@download/ENCFF322OQS.bam released s3://encode-public/2020/10/09/50e1468a-0107-4ddc-a314-f4b5cf627caf/ENCFF322OQS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF570QIM bam bam unfiltered alignments GRCh38 ENCSR694AEQ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF434FMH/, /files/ENCFF643CGH/ 2980220188 ENCODE Processing Pipeline 602bf1678214e48a5ce62b5d66f585ce https://www.encodeproject.org/files/ENCFF570QIM/@@download/ENCFF570QIM.bam released s3://encode-public/2016/12/19/6b433756-92cd-4c01-acc6-3a83f7197bf2/ENCFF570QIM.bam ENCODE3 GRCh38 archived low read length ENCFF766GJM bam bam unfiltered alignments hg19 ENCSR694AEQ Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF434FMH/, /files/ENCFF807MUK/ 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1736350911 ENCODE Processing Pipeline e68e7370ec91030afdb8ec01d78fe6b8 https://www.encodeproject.org/files/ENCFF835OKR/@@download/ENCFF835OKR.bam released s3://encode-public/2016/12/19/3981b69d-05a8-42b2-ad72-e78441c6525c/ENCFF835OKR.bam ENCODE3 hg19 archived low read length ENCFF346LFH fastq fastq reads ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2341619239 Bing Ren, UCSD fc240c63049d001505ef126492fbc7b6 SRA:SRR3652652 https://www.encodeproject.org/files/ENCFF346LFH/@@download/ENCFF346LFH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/12/5a9270d1-2cc7-4dba-b57a-636c2b2bba7e/ENCFF346LFH.fastq.gz ENCFF440KRN fastq fastq reads ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2819039941 Bing Ren, UCSD 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Pipeline 770bd0dec66697e61040c51b46d7a097 https://www.encodeproject.org/files/ENCFF720CTQ/@@download/ENCFF720CTQ.bam archived s3://encode-public/2016/04/20/01c55115-c4f1-463c-aadb-7b1708c7cee7/ENCFF720CTQ.bam ENCFF294RLZ bam bam alignments mm10-minimal ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF630SQJ/, /files/ENCFF806TVZ/, /files/ENCFF346LFH/ 2407142605 ENCODE Processing Pipeline 411489d50d47b7ff3fa75f9ddd1d89dc https://www.encodeproject.org/files/ENCFF294RLZ/@@download/ENCFF294RLZ.bam archived s3://encode-public/2016/04/20/ae7b3dd3-5fe3-4dca-a73a-86af0e337615/ENCFF294RLZ.bam ENCFF981IPZ bam bam unfiltered alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF630SQJ/, /files/ENCFF018NEO/, /files/ENCFF346LFH/ 3418488166 ENCODE Processing Pipeline f7728c0b7d286b93fe11cfd45deb760e https://www.encodeproject.org/files/ENCFF981IPZ/@@download/ENCFF981IPZ.bam released s3://encode-public/2016/05/20/6e0aa4ce-e913-41d5-9bd4-9a6d1a574d9d/ENCFF981IPZ.bam ENCODE3 mm10 archived ENCFF961LZY bam bam unfiltered alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF440KRN/, /files/ENCFF018NEO/ 3747471229 ENCODE Processing Pipeline 7f13381e0b5d96d3d54bb9faad9fb506 https://www.encodeproject.org/files/ENCFF961LZY/@@download/ENCFF961LZY.bam released s3://encode-public/2016/05/20/8a155d06-f1f2-4667-be20-ca73de06f129/ENCFF961LZY.bam ENCODE3 mm10 archived ENCFF741HOY bam bam alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF630SQJ/, /files/ENCFF018NEO/, /files/ENCFF346LFH/ 2406496693 ENCODE Processing Pipeline 4df4482284a14d19c3013198484cc078 https://www.encodeproject.org/files/ENCFF741HOY/@@download/ENCFF741HOY.bam released s3://encode-public/2016/05/20/5fe79efc-d2a7-4308-a9ce-c24a9bc06cb0/ENCFF741HOY.bam ENCODE3 mm10 archived ENCFF104UXG bam bam alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF440KRN/, /files/ENCFF018NEO/ 2635876228 ENCODE Processing Pipeline 8a1caf404a2022278af4cf729cc02b3d https://www.encodeproject.org/files/ENCFF104UXG/@@download/ENCFF104UXG.bam released s3://encode-public/2016/05/20/a0de591c-6e58-47b5-9667-369c7277c261/ENCFF104UXG.bam ENCODE3 mm10 archived ENCFF501NEH bam bam alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF630SQJ/, /files/ENCFF346LFH/, /files/ENCFF309GLL/ 2412047629 ENCODE Processing Pipeline fa06458a0fcf3bce45893fae6e2c4321 https://www.encodeproject.org/files/ENCFF501NEH/@@download/ENCFF501NEH.bam released s3://encode-public/2020/10/08/921ada4a-a494-4866-9246-9059453ec8f4/ENCFF501NEH.bam ENCODE4 v1.5.1 mm10 released ENCFF373TMI bam bam unfiltered alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF630SQJ/, /files/ENCFF346LFH/, /files/ENCFF309GLL/ 3260554512 ENCODE Processing Pipeline fd09f212d84b0b1558cef398b02b3807 https://www.encodeproject.org/files/ENCFF373TMI/@@download/ENCFF373TMI.bam released s3://encode-public/2020/10/08/70186085-dcd1-4366-a465-37c9b39e9eed/ENCFF373TMI.bam ENCODE4 v1.5.1 mm10 released ENCFF861QDQ bam bam unfiltered alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF440KRN/, /files/ENCFF309GLL/ 3574227010 ENCODE Processing Pipeline 51b2635655ccb5ddb3c88593e7b764fb https://www.encodeproject.org/files/ENCFF861QDQ/@@download/ENCFF861QDQ.bam released s3://encode-public/2020/10/08/feda5dab-7093-48d9-9772-6d403fecdcb7/ENCFF861QDQ.bam ENCODE4 v1.5.1 mm10 released ENCFF291XJQ bam bam alignments mm10 ENCSR646GHA Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-04-22 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF440KRN/, /files/ENCFF309GLL/ 2639593403 ENCODE Processing Pipeline 6f59a993180c0ae1ea9c8a691604d7f9 https://www.encodeproject.org/files/ENCFF291XJQ/@@download/ENCFF291XJQ.bam released s3://encode-public/2020/10/08/e5707257-6f29-4677-8c58-6e37fdcddec5/ENCFF291XJQ.bam ENCODE4 v1.5.1 mm10 released ENCFF853NEA fastq fastq reads ENCSR655KFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1394838234 Richard Myers, HAIB 68699ac0228204e3be6f147e2a60bdef SRA:SRR5111913 https://www.encodeproject.org/files/ENCFF853NEA/@@download/ENCFF853NEA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/f344e3b5-635c-4854-9932-4f4110ff8180/ENCFF853NEA.fastq.gz ENCFF731TNW bam bam unfiltered alignments mm10 ENCSR655KFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF853NEA/ 1534253247 ENCODE Processing Pipeline e412a48edff1844013cd3d99e38a804e https://www.encodeproject.org/files/ENCFF731TNW/@@download/ENCFF731TNW.bam released s3://encode-public/2016/05/20/c29ee991-cd07-42b0-887a-ce79a3d6fa09/ENCFF731TNW.bam ENCODE3 mm10 archived ENCFF174UCS bam bam alignments mm10 ENCSR655KFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF853NEA/ 1205096189 ENCODE Processing Pipeline 0e6e9324c9b4fce57bec207dc38d6721 https://www.encodeproject.org/files/ENCFF174UCS/@@download/ENCFF174UCS.bam released s3://encode-public/2016/05/20/5e6b2b82-78c7-4aac-a9f0-1aeb9c568a68/ENCFF174UCS.bam ENCODE3 mm10 archived ENCFF111OVO bam bam unfiltered alignments mm10 ENCSR655KFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF853NEA/ 1517293674 ENCODE Processing Pipeline 37bc0199840d959738e0f52e80f24336 https://www.encodeproject.org/files/ENCFF111OVO/@@download/ENCFF111OVO.bam released s3://encode-public/2020/10/08/c7144ebc-3cb8-43a5-b3b5-1eef21f2d810/ENCFF111OVO.bam ENCODE4 v1.5.1 mm10 released ENCFF569BYS bam bam alignments mm10 ENCSR655KFC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002113 kidney tissue Mus musculus DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF853NEA/ 1250115049 ENCODE Processing Pipeline b55e329c48c400ad7b163aa01bedc76a https://www.encodeproject.org/files/ENCFF569BYS/@@download/ENCFF569BYS.bam released s3://encode-public/2020/10/08/27e01d8e-1e5f-4d6a-b744-ca7716c2beae/ENCFF569BYS.bam ENCODE4 v1.5.1 mm10 released ENCFF459PJT bam bam unfiltered alignments hg19 ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF459OWK/, /files/ENCFF500SYJ/, /files/ENCFF807MUK/ 2178871299 ENCODE Processing Pipeline f669c8ee9e8461ad072ce805e47decfa https://www.encodeproject.org/files/ENCFF459PJT/@@download/ENCFF459PJT.bam released s3://encode-public/2018/02/22/077d5168-3263-442f-b0c9-12e1a9858398/ENCFF459PJT.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF500SYJ fastq fastq reads ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 755056483 Kevin White, UChicago 8bdcaf3e3c2dddc3c583fd7259420421 SRA:SRR6213097 https://www.encodeproject.org/files/ENCFF500SYJ/@@download/ENCFF500SYJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF459OWK/ released s3://encode-public/2016/03/14/5abef8e8-9956-4c66-90ee-6654245226b7/ENCFF500SYJ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF459OWK fastq fastq reads ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1298680232 Kevin White, UChicago c59d5cdfb2f5d9627322cafa5aa6edec SRA:SRR6213098 https://www.encodeproject.org/files/ENCFF459OWK/@@download/ENCFF459OWK.fastq.gz Illumina HiSeq 2000 /files/ENCFF067NSO/, /files/ENCFF679NOJ/ released s3://encode-public/2016/03/22/dd51b6dd-ab77-4e34-8891-e059c4cb8301/ENCFF459OWK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF129ZZR bam bam alignments hg19 ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF459OWK/, /files/ENCFF500SYJ/, /files/ENCFF807MUK/ 1631580900 ENCODE Processing Pipeline 60c4353df4ad120d31a6c46d3f6c0cfa https://www.encodeproject.org/files/ENCFF129ZZR/@@download/ENCFF129ZZR.bam released s3://encode-public/2016/04/23/76ce7afa-6d40-4fe6-a8ae-9f749a20115c/ENCFF129ZZR.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF947YCZ bam bam unfiltered alignments GRCh38 ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF459OWK/, /files/ENCFF500SYJ/, /files/ENCFF643CGH/ 2186563393 ENCODE Processing Pipeline 38ca3ff20c60af1b5dd6a3d14e3e62d0 https://www.encodeproject.org/files/ENCFF947YCZ/@@download/ENCFF947YCZ.bam released s3://encode-public/2016/05/06/4086f574-322c-4007-b748-f6de394128ba/ENCFF947YCZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF699KKU bam bam alignments GRCh38 ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF459OWK/, /files/ENCFF500SYJ/, /files/ENCFF643CGH/ 1630929654 ENCODE Processing Pipeline 82c6e3945f58965b37751a5a2e5a2023 https://www.encodeproject.org/files/ENCFF699KKU/@@download/ENCFF699KKU.bam released s3://encode-public/2016/05/06/9f614e4e-16b7-4884-a501-90ee285c1891/ENCFF699KKU.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF995WOF bam bam unfiltered alignments GRCh38 ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF500SYJ/, /files/ENCFF110MCL/, /files/ENCFF459OWK/ 2193384498 ENCODE Processing Pipeline 446bb9d1df80f17d6d6e8cf8ad383b16 https://www.encodeproject.org/files/ENCFF995WOF/@@download/ENCFF995WOF.bam released s3://encode-public/2020/10/27/fb74cb66-6bf4-4382-9343-29f4844a5e4c/ENCFF995WOF.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF683EYE bam bam alignments GRCh38 ENCSR017CYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NR2C2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7182/'], '@type': ['Target', 'Item'], 'label': 'NR2C2', 'title': 'NR2C2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0933f89c-c241-4a19-91a8-a3ecc27f7964', 'schema_version': '14', 'name': 'NR2C2-human', '@id': '/targets/NR2C2-human/', 'status': 'released'} hg19 3 14911275 15112240 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF500SYJ/, /files/ENCFF110MCL/, /files/ENCFF459OWK/ 1698521452 ENCODE Processing Pipeline 670c4e61dbf79a16f37889ef7c0f6e68 https://www.encodeproject.org/files/ENCFF683EYE/@@download/ENCFF683EYE.bam released s3://encode-public/2020/10/27/da6c7dc3-5ad7-44f5-8b96-4cb057d23c7b/ENCFF683EYE.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF196VCR fastq fastq reads ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF173EDE/ 2616588025 Michael Snyder, Stanford 6f510f8487445ad31924b8784f75d791 SRA:SRR5112385 https://www.encodeproject.org/files/ENCFF196VCR/@@download/ENCFF196VCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/0e8c41e1-df2e-489f-9d63-36a55b7a4c88/ENCFF196VCR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF173EDE fastq fastq reads ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF196VCR/ 2815847641 Michael Snyder, Stanford 00447002338dab608fcbd41a1853faef SRA:SRR5112385 https://www.encodeproject.org/files/ENCFF173EDE/@@download/ENCFF173EDE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/9f4d8ee7-b9a3-4e6d-8e0b-fc720730a2b8/ENCFF173EDE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF348IEF bam bam unfiltered alignments GRCh38 ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF173EDE/, /files/ENCFF196VCR/ 5572023466 ENCODE Processing Pipeline 8bb5ad0de2b38050bfb330f5dcc3d6b3 https://www.encodeproject.org/files/ENCFF348IEF/@@download/ENCFF348IEF.bam released s3://encode-public/2016/08/13/b8b26b25-98b1-4981-8a46-e408dd61b224/ENCFF348IEF.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF058AVH bam bam alignments GRCh38 ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF173EDE/, /files/ENCFF196VCR/ 4568667580 ENCODE Processing Pipeline bb7583a58876418ab3418ce5891f63ef https://www.encodeproject.org/files/ENCFF058AVH/@@download/ENCFF058AVH.bam released s3://encode-public/2016/08/13/ddbad0fd-15cb-44ea-b26f-2b84b45bca8a/ENCFF058AVH.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF736ULL bam bam unfiltered alignments hg19 ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF173EDE/, /files/ENCFF196VCR/ 5563155246 ENCODE Processing Pipeline 4929ba2a94603c285ca7bb8134e42c25 https://www.encodeproject.org/files/ENCFF736ULL/@@download/ENCFF736ULL.bam released s3://encode-public/2016/09/11/7df1a9e5-354a-4af1-b3be-3b39697a2f39/ENCFF736ULL.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF848QHI bam bam alignments hg19 ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF173EDE/, /files/ENCFF196VCR/ 4565478865 ENCODE Processing Pipeline 36ea7ea484f5557d29fed2c15ef07859 https://www.encodeproject.org/files/ENCFF848QHI/@@download/ENCFF848QHI.bam released s3://encode-public/2016/09/11/3ed46c95-ef46-493b-a9ee-46a7c2548e90/ENCFF848QHI.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF713QSG bam bam alignments GRCh38 ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF196VCR/, /files/ENCFF173EDE/ 4618490426 ENCODE Processing Pipeline 570e8a5aaae911f786e328808dd1f16f https://www.encodeproject.org/files/ENCFF713QSG/@@download/ENCFF713QSG.bam released s3://encode-public/2020/06/02/ecaa4158-9d60-4940-8c8a-0e61e673912a/ENCFF713QSG.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF105DXD bam bam unfiltered alignments GRCh38 ENCSR274OGE Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF196VCR/, /files/ENCFF173EDE/ 5655405374 ENCODE Processing Pipeline b58b03af375283a65abbc7f664bc7ad7 https://www.encodeproject.org/files/ENCFF105DXD/@@download/ENCFF105DXD.bam released s3://encode-public/2020/06/02/ca992a5f-dacf-4918-963b-3305d45f5ee3/ENCFF105DXD.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF473QSO fastq fastq reads ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF135ANM/ 2898562579 Michael Snyder, Stanford dbce67e363561b1a1f5103fe78dff299 SRA:SRR6214412 https://www.encodeproject.org/files/ENCFF473QSO/@@download/ENCFF473QSO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/0f1d19a9-95ed-4501-a01f-8d6548f72dfe/ENCFF473QSO.fastq.gz ENCFF135ANM fastq fastq reads ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF473QSO/ 2507774623 Michael Snyder, Stanford 55ae062af11b19bbe1ed5d0b54492b56 SRA:SRR6214412 https://www.encodeproject.org/files/ENCFF135ANM/@@download/ENCFF135ANM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/142a8b37-cde8-4109-a540-77082c936e2e/ENCFF135ANM.fastq.gz ENCFF442KWM bam bam unfiltered alignments GRCh38 ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF473QSO/, /files/ENCFF643CGH/, /files/ENCFF135ANM/ 5362014695 ENCODE Processing Pipeline 5ae20811229483982c9ca34639b46e8c https://www.encodeproject.org/files/ENCFF442KWM/@@download/ENCFF442KWM.bam released s3://encode-public/2017/03/17/a0283260-3e34-4cbe-8a2f-914b174ee337/ENCFF442KWM.bam ENCODE3 GRCh38 archived ENCFF209CTL bam bam unfiltered alignments hg19 ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF473QSO/, /files/ENCFF807MUK/, /files/ENCFF135ANM/ 5351871380 ENCODE Processing Pipeline b16fc3daa7229ff65cb5244267591794 https://www.encodeproject.org/files/ENCFF209CTL/@@download/ENCFF209CTL.bam released s3://encode-public/2017/03/17/2f992924-018f-4f28-83c3-8d47a35d0b87/ENCFF209CTL.bam ENCODE3 hg19 archived ENCFF977RET bam bam alignments hg19 ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF473QSO/, /files/ENCFF807MUK/, /files/ENCFF135ANM/ 4486288058 ENCODE Processing Pipeline 03a9b0d95adb3f660790e2c475b43854 https://www.encodeproject.org/files/ENCFF977RET/@@download/ENCFF977RET.bam released s3://encode-public/2017/03/17/1f705b9a-e645-4127-91dc-5ed4f3bbe57f/ENCFF977RET.bam ENCODE3 hg19 archived ENCFF157IHW bam bam alignments GRCh38 ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF473QSO/, /files/ENCFF643CGH/, /files/ENCFF135ANM/ 4495117998 ENCODE Processing Pipeline 691d7c20ccbf306e9c8e08dcc0c81ef3 https://www.encodeproject.org/files/ENCFF157IHW/@@download/ENCFF157IHW.bam released s3://encode-public/2017/03/17/97dfb3fa-4bd4-4c62-81b1-bb4c727f2f8d/ENCFF157IHW.bam ENCODE3 GRCh38 archived ENCFF669TFV bam bam unfiltered alignments GRCh38 ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF135ANM/, /files/ENCFF473QSO/ 5342179357 ENCODE Processing Pipeline bb08ccf6b66e16b7e07c7011c39286f1 https://www.encodeproject.org/files/ENCFF669TFV/@@download/ENCFF669TFV.bam released s3://encode-public/2020/06/02/814bb9a4-d321-401f-aca2-67c8f16f2289/ENCFF669TFV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF140JFH bam bam alignments GRCh38 ENCSR895OZW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF135ANM/, /files/ENCFF473QSO/ 4396374113 ENCODE Processing Pipeline 91ce04fe718bf979706a7bd09e9483d0 https://www.encodeproject.org/files/ENCFF140JFH/@@download/ENCFF140JFH.bam released s3://encode-public/2020/06/02/1472cf7a-fe17-40e1-be1c-2cf24a7d98fa/ENCFF140JFH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF848KRC fastq fastq reads ENCSR153HCG Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA modENCODE >200 1 1_1 44 single-ended 945132300 Kevin White, UChicago f26ddd184d1990c373c586f1172a2922 https://www.encodeproject.org/files/ENCFF848KRC/@@download/ENCFF848KRC.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2016/08/22/976d824e-11fc-4b36-b9b9-9968e6ef2742/ENCFF848KRC.fastq.gz lacking processed data ENCFF313OIF fastq fastq reads ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF646GDJ/ 3570984714 Michael Snyder, Stanford dba198e665a7792f7f1800217c544590 SRA:SRR6214404 https://www.encodeproject.org/files/ENCFF313OIF/@@download/ENCFF313OIF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/24/2beb2f6a-fcf2-411e-8032-6c373518c72c/ENCFF313OIF.fastq.gz mild to moderate bottlenecking ENCFF646GDJ fastq fastq reads ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF313OIF/ 3716518738 Michael Snyder, Stanford 513d3a2abd34446999c42f3bc18e82f9 SRA:SRR6214404 https://www.encodeproject.org/files/ENCFF646GDJ/@@download/ENCFF646GDJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/24/22d1c661-7032-44eb-b4ed-434709d5437d/ENCFF646GDJ.fastq.gz mild to moderate bottlenecking ENCFF017BHJ bam bam unfiltered alignments GRCh38 ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF313OIF/, /files/ENCFF646GDJ/, /files/ENCFF643CGH/ 6688883591 ENCODE Processing Pipeline 7e7e078b03bd3a22a9e312c8d7f10e1c https://www.encodeproject.org/files/ENCFF017BHJ/@@download/ENCFF017BHJ.bam released s3://encode-public/2016/05/06/dade4e86-1d80-42a0-a8bc-152a0a10e7d7/ENCFF017BHJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF512QNP bam bam alignments GRCh38 ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF313OIF/, /files/ENCFF646GDJ/, /files/ENCFF643CGH/ 4860754698 ENCODE Processing Pipeline a16523880a16f7030b76f37c9980face https://www.encodeproject.org/files/ENCFF512QNP/@@download/ENCFF512QNP.bam released s3://encode-public/2016/05/06/7fc36d02-ea28-4a01-bd4a-0522082a1aa2/ENCFF512QNP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF653YTN bam bam unfiltered alignments hg19 ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF313OIF/, /files/ENCFF646GDJ/, /files/ENCFF807MUK/ 6683427228 ENCODE Processing Pipeline c9e7b58d5e44abad4dbed9346e71e843 https://www.encodeproject.org/files/ENCFF653YTN/@@download/ENCFF653YTN.bam released s3://encode-public/2016/12/06/8ccb2c26-61fc-40a2-90ae-39e1e0431925/ENCFF653YTN.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF791LLR bam bam alignments hg19 ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF313OIF/, /files/ENCFF646GDJ/, /files/ENCFF807MUK/ 4849672282 ENCODE Processing Pipeline 5e389e2463c74c88d569ed306be7a158 https://www.encodeproject.org/files/ENCFF791LLR/@@download/ENCFF791LLR.bam released s3://encode-public/2016/12/06/d4828b2b-522a-4fb4-8ca8-cd577fe9eca8/ENCFF791LLR.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF914OWR bam bam alignments GRCh38 ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF313OIF/, /files/ENCFF646GDJ/ 4759882706 ENCODE Processing Pipeline 768dfd9826f963006a8f0fc4ac12b7e6 https://www.encodeproject.org/files/ENCFF914OWR/@@download/ENCFF914OWR.bam released s3://encode-public/2020/06/02/55fe96b6-1008-4abb-b368-e1fa8fa771d2/ENCFF914OWR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF462PIK bam bam unfiltered alignments GRCh38 ENCSR799YAO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF313OIF/, /files/ENCFF646GDJ/ 6700578580 ENCODE Processing Pipeline 8898fe81cd2ffb3917d7074ee7d04e1b https://www.encodeproject.org/files/ENCFF462PIK/@@download/ENCFF462PIK.bam released s3://encode-public/2020/06/02/3d524251-f07b-4d9f-9435-ace92d3bab8a/ENCFF462PIK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF450OED bam bam unfiltered alignments hg19 ENCSR420JAH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZFX'], 'aliases': ['michael-snyder:TS-1635'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7543/'], '@type': ['Target', 'Item'], 'label': 'ZFX', 'title': 'ZFX (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'bf63fa84-009b-4b8e-9885-31d3dce9408a', 'schema_version': '14', 'name': 'ZFX-human', '@id': '/targets/ZFX-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF044EPS/, /files/ENCFF807MUK/ 1629783756 ENCODE Processing Pipeline f3849aa210e4afbcbd4d3bff2e69707d https://www.encodeproject.org/files/ENCFF450OED/@@download/ENCFF450OED.bam released s3://encode-public/2018/02/22/2d3c7bc3-ff77-4f1f-9763-16df4a51e847/ENCFF450OED.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF044EPS fastq fastq reads ENCSR420JAH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZFX'], 'aliases': ['michael-snyder:TS-1635'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7543/'], '@type': ['Target', 'Item'], 'label': 'ZFX', 'title': 'ZFX (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'bf63fa84-009b-4b8e-9885-31d3dce9408a', 'schema_version': '14', 'name': 'ZFX-human', '@id': '/targets/ZFX-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1506716415 Kevin White, UChicago c4062f7eab622800858c5101f49e6302 SRA:SRR6213152 https://www.encodeproject.org/files/ENCFF044EPS/@@download/ENCFF044EPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF532RGH/ released s3://encode-public/2016/04/04/4ae977f3-9ec3-4fb0-b744-f55e2a33a789/ENCFF044EPS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF053ULL bam bam alignments hg19 ENCSR420JAH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZFX'], 'aliases': ['michael-snyder:TS-1635'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7543/'], '@type': ['Target', 'Item'], 'label': 'ZFX', 'title': 'ZFX (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'bf63fa84-009b-4b8e-9885-31d3dce9408a', 'schema_version': '14', 'name': 'ZFX-human', '@id': '/targets/ZFX-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF044EPS/, /files/ENCFF807MUK/ 1259614888 ENCODE Processing Pipeline e992146c3c6c0ffffa4dae6e8208c119 https://www.encodeproject.org/files/ENCFF053ULL/@@download/ENCFF053ULL.bam released s3://encode-public/2016/04/23/0eed8b11-9cd4-44f4-bcdb-736bad8ab4ef/ENCFF053ULL.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF114PMK bam bam unfiltered alignments GRCh38 ENCSR420JAH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZFX'], 'aliases': ['michael-snyder:TS-1635'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7543/'], '@type': ['Target', 'Item'], 'label': 'ZFX', 'title': 'ZFX (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'bf63fa84-009b-4b8e-9885-31d3dce9408a', 'schema_version': '14', 'name': 'ZFX-human', '@id': '/targets/ZFX-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF044EPS/, /files/ENCFF643CGH/ 1638130929 ENCODE Processing Pipeline f9a4dff7709890b7c2cbc43ad4c4f698 https://www.encodeproject.org/files/ENCFF114PMK/@@download/ENCFF114PMK.bam released s3://encode-public/2016/05/06/0d726305-df92-4d9d-960a-93ccb124d96a/ENCFF114PMK.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF756KAA bam bam alignments GRCh38 ENCSR420JAH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZFX'], 'aliases': ['michael-snyder:TS-1635'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7543/'], '@type': ['Target', 'Item'], 'label': 'ZFX', 'title': 'ZFX (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'bf63fa84-009b-4b8e-9885-31d3dce9408a', 'schema_version': '14', 'name': 'ZFX-human', '@id': '/targets/ZFX-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF044EPS/, /files/ENCFF643CGH/ 1259229794 ENCODE Processing Pipeline d7454c46a0e1a70f6a77d7911fed8f5d https://www.encodeproject.org/files/ENCFF756KAA/@@download/ENCFF756KAA.bam released s3://encode-public/2016/05/06/3e9fb636-ae94-4164-9d3e-331c31eb0c56/ENCFF756KAA.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF383RZH bam bam alignments GRCh38 ENCSR420JAH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZFX'], 'aliases': ['michael-snyder:TS-1635'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7543/'], '@type': ['Target', 'Item'], 'label': 'ZFX', 'title': 'ZFX (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'bf63fa84-009b-4b8e-9885-31d3dce9408a', 'schema_version': '14', 'name': 'ZFX-human', '@id': '/targets/ZFX-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF044EPS/, /files/ENCFF110MCL/ 1337654329 ENCODE Processing Pipeline 07848aeef83834096b2d102a558b3cf1 https://www.encodeproject.org/files/ENCFF383RZH/@@download/ENCFF383RZH.bam released s3://encode-public/2020/10/27/b204c139-774c-48c6-8b83-7087e1759cf3/ENCFF383RZH.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF304ZXL bam bam unfiltered alignments GRCh38 ENCSR420JAH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZFX'], 'aliases': ['michael-snyder:TS-1635'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7543/'], '@type': ['Target', 'Item'], 'label': 'ZFX', 'title': 'ZFX (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'bf63fa84-009b-4b8e-9885-31d3dce9408a', 'schema_version': '14', 'name': 'ZFX-human', '@id': '/targets/ZFX-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF044EPS/, /files/ENCFF110MCL/ 1635258025 ENCODE Processing Pipeline 16f832507a5539e11600b7dde6cb24c0 https://www.encodeproject.org/files/ENCFF304ZXL/@@download/ENCFF304ZXL.bam released s3://encode-public/2020/10/27/3be4e8d7-293e-42f8-a171-d415429a93fb/ENCFF304ZXL.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF552RIK fastq fastq reads ENCSR852KZF Control ChIP-seq /worm-donors/ENCDO608PKK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183427/'], '@type': ['Target', 'Item'], 'name': 'hlh-15-celegans', 'label': 'hlh-15', '@id': '/targets/hlh-15-celegans/', 'title': 'hlh-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdd1e274-326c-4133-9a80-24ce932e854f', 'status': 'released'} ce10 X 2401441 2437867 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 826728653 Kevin White, UChicago a5fe5fef3707aa91c4eebf73bdb6bdf9 https://www.encodeproject.org/files/ENCFF552RIK/@@download/ENCFF552RIK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/09/2ae94bce-66e3-4a82-aa20-bcf00216507e/ENCFF552RIK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF489TAZ bam bam alignments ce10 ENCSR852KZF Control ChIP-seq /worm-donors/ENCDO608PKK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183427/'], '@type': ['Target', 'Item'], 'name': 'hlh-15-celegans', 'label': 'hlh-15', '@id': '/targets/hlh-15-celegans/', 'title': 'hlh-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdd1e274-326c-4133-9a80-24ce932e854f', 'status': 'released'} ce10 X 2401441 2437867 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF552RIK/ 982134546 Kevin White, UChicago db46fe7e634e1ec2ceab393d39ce8ad6 https://www.encodeproject.org/files/ENCFF489TAZ/@@download/ENCFF489TAZ.bam released s3://encode-public/2016/05/10/b6163b30-1d35-4890-88aa-b3914598783c/ENCFF489TAZ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF973YCA bam bam alignments ce11 ENCSR852KZF Control ChIP-seq /worm-donors/ENCDO608PKK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183427/'], '@type': ['Target', 'Item'], 'name': 'hlh-15-celegans', 'label': 'hlh-15', '@id': '/targets/hlh-15-celegans/', 'title': 'hlh-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdd1e274-326c-4133-9a80-24ce932e854f', 'status': 'released'} ce10 X 2401441 2437867 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF552RIK/ 982974773 Kevin White, UChicago 3371c0e75024ee55081bb5a28de93f5e https://www.encodeproject.org/files/ENCFF973YCA/@@download/ENCFF973YCA.bam released s3://encode-public/2016/05/10/a93b98af-d727-4376-a278-d3b03fbc6924/ENCFF973YCA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF715HJO bigWig bigWig read-depth normalized signal ce10 ENCSR852KZF Control ChIP-seq /worm-donors/ENCDO608PKK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183427/'], '@type': ['Target', 'Item'], 'name': 'hlh-15-celegans', 'label': 'hlh-15', '@id': '/targets/hlh-15-celegans/', 'title': 'hlh-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdd1e274-326c-4133-9a80-24ce932e854f', 'status': 'released'} ce10 X 2401441 2437867 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF489TAZ/ 10005226 Kevin White, UChicago ec7c8d22a31998760e9b7c45a6cc2dd9 https://www.encodeproject.org/files/ENCFF715HJO/@@download/ENCFF715HJO.bigWig released s3://encode-public/2016/05/11/52fabb9b-6479-46bb-9d13-fbd11d20f891/ENCFF715HJO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF428JNU bigWig bigWig signal of unique reads ce10 ENCSR852KZF Control ChIP-seq /worm-donors/ENCDO608PKK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183427/'], '@type': ['Target', 'Item'], 'name': 'hlh-15-celegans', 'label': 'hlh-15', '@id': '/targets/hlh-15-celegans/', 'title': 'hlh-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdd1e274-326c-4133-9a80-24ce932e854f', 'status': 'released'} ce10 X 2401441 2437867 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF489TAZ/ 9959470 Kevin White, UChicago 49b97631992a1a087d8033d31d9bc6a6 https://www.encodeproject.org/files/ENCFF428JNU/@@download/ENCFF428JNU.bigWig released s3://encode-public/2016/05/11/f80f627b-55f9-4730-bc92-5a5995a6a143/ENCFF428JNU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF876QOI bigWig bigWig read-depth normalized signal ce11 ENCSR852KZF Control ChIP-seq /worm-donors/ENCDO608PKK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183427/'], '@type': ['Target', 'Item'], 'name': 'hlh-15-celegans', 'label': 'hlh-15', '@id': '/targets/hlh-15-celegans/', 'title': 'hlh-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdd1e274-326c-4133-9a80-24ce932e854f', 'status': 'released'} ce10 X 2401441 2437867 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF973YCA/ 9989188 Kevin White, UChicago 356bdca9b74c5320ef358162e5f73aaa https://www.encodeproject.org/files/ENCFF876QOI/@@download/ENCFF876QOI.bigWig released s3://encode-public/2016/05/11/74726bae-581f-45c1-a751-46cc19356f20/ENCFF876QOI.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF252JOG bigWig bigWig signal of unique reads ce11 ENCSR852KZF Control ChIP-seq /worm-donors/ENCDO608PKK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183427/'], '@type': ['Target', 'Item'], 'name': 'hlh-15-celegans', 'label': 'hlh-15', '@id': '/targets/hlh-15-celegans/', 'title': 'hlh-15 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'cdd1e274-326c-4133-9a80-24ce932e854f', 'status': 'released'} ce10 X 2401441 2437867 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF973YCA/ 9955753 Kevin White, UChicago 5844ca8d89b482879e641a8ea3aa3296 https://www.encodeproject.org/files/ENCFF252JOG/@@download/ENCFF252JOG.bigWig released s3://encode-public/2016/05/11/95d57592-640a-4d5a-929b-af57ceac6d2f/ENCFF252JOG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF418JGM fastq fastq reads ENCSR105HNS Control ChIP-seq /fly-donors/ENCDO532RAM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37631/'], '@type': ['Target', 'Item'], 'name': 'fd59A-dmelanogaster', 'label': 'fd59A', '@id': '/targets/fd59A-dmelanogaster/', 'title': 'fd59A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f59f0111-377b-41c5-9c64-9047155413c7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 461994077 Kevin White, UChicago c805c29c8669d72245a731dc5d4b3209 https://www.encodeproject.org/files/ENCFF418JGM/@@download/ENCFF418JGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/808fac68-3737-473d-a660-807166abedc7/ENCFF418JGM.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF649NAR bam bam alignments dm3 ENCSR105HNS Control ChIP-seq /fly-donors/ENCDO532RAM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37631/'], '@type': ['Target', 'Item'], 'name': 'fd59A-dmelanogaster', 'label': 'fd59A', '@id': '/targets/fd59A-dmelanogaster/', 'title': 'fd59A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f59f0111-377b-41c5-9c64-9047155413c7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF418JGM/ 607974911 Kevin White, UChicago e27e4ba4640715842b0c38fcfbc5d0ea https://www.encodeproject.org/files/ENCFF649NAR/@@download/ENCFF649NAR.bam released s3://encode-public/2017/09/12/bebb18fa-2077-4f4c-901c-1dd75958666b/ENCFF649NAR.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF388FJK bam bam alignments dm6 ENCSR105HNS Control ChIP-seq /fly-donors/ENCDO532RAM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37631/'], '@type': ['Target', 'Item'], 'name': 'fd59A-dmelanogaster', 'label': 'fd59A', '@id': '/targets/fd59A-dmelanogaster/', 'title': 'fd59A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f59f0111-377b-41c5-9c64-9047155413c7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF418JGM/ 605461971 Kevin White, UChicago 4b49323d91ef920a67ff2b7547d73d25 https://www.encodeproject.org/files/ENCFF388FJK/@@download/ENCFF388FJK.bam released s3://encode-public/2017/09/13/62aeebb2-d921-4ce2-a82a-31da523953d9/ENCFF388FJK.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF051BVF bigWig bigWig signal of unique reads dm3 ENCSR105HNS Control ChIP-seq /fly-donors/ENCDO532RAM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37631/'], '@type': ['Target', 'Item'], 'name': 'fd59A-dmelanogaster', 'label': 'fd59A', '@id': '/targets/fd59A-dmelanogaster/', 'title': 'fd59A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f59f0111-377b-41c5-9c64-9047155413c7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF649NAR/ 15238280 Kevin White, UChicago 00cd6f608d1f2bcabec6a9371f5bf75e https://www.encodeproject.org/files/ENCFF051BVF/@@download/ENCFF051BVF.bigWig released s3://encode-public/2017/09/13/43de86c2-42d7-4c9b-a755-0572724ef73d/ENCFF051BVF.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF101NGC bigWig bigWig read-depth normalized signal dm3 ENCSR105HNS Control ChIP-seq /fly-donors/ENCDO532RAM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37631/'], '@type': ['Target', 'Item'], 'name': 'fd59A-dmelanogaster', 'label': 'fd59A', '@id': '/targets/fd59A-dmelanogaster/', 'title': 'fd59A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f59f0111-377b-41c5-9c64-9047155413c7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF649NAR/ 15270575 Kevin White, UChicago b791d071aa18d2116bae1a16f48ba458 https://www.encodeproject.org/files/ENCFF101NGC/@@download/ENCFF101NGC.bigWig released s3://encode-public/2017/09/13/c33447a6-650b-4721-905c-24a9c4946a2f/ENCFF101NGC.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF027LLX bigWig bigWig signal of unique reads dm6 ENCSR105HNS Control ChIP-seq /fly-donors/ENCDO532RAM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37631/'], '@type': ['Target', 'Item'], 'name': 'fd59A-dmelanogaster', 'label': 'fd59A', '@id': '/targets/fd59A-dmelanogaster/', 'title': 'fd59A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f59f0111-377b-41c5-9c64-9047155413c7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF388FJK/ 17444760 Kevin White, UChicago bc90736519df40d4da1c96722da79412 https://www.encodeproject.org/files/ENCFF027LLX/@@download/ENCFF027LLX.bigWig released s3://encode-public/2017/09/14/5ba1bc39-7cc4-4786-ac26-0cf1b398ff69/ENCFF027LLX.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF233TLR bigWig bigWig read-depth normalized signal dm6 ENCSR105HNS Control ChIP-seq /fly-donors/ENCDO532RAM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37631/'], '@type': ['Target', 'Item'], 'name': 'fd59A-dmelanogaster', 'label': 'fd59A', '@id': '/targets/fd59A-dmelanogaster/', 'title': 'fd59A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f59f0111-377b-41c5-9c64-9047155413c7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF388FJK/ 17475531 Kevin White, UChicago ad6b67e9e2363be47358eee3fce4fe52 https://www.encodeproject.org/files/ENCFF233TLR/@@download/ENCFF233TLR.bigWig released s3://encode-public/2017/09/14/3954de9d-a034-428b-851e-4ec16dadd3cd/ENCFF233TLR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF331QQL fastq fastq reads ENCSR999LAC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 single-ended 1182214076 Richard Myers, HAIB ac2500fc250d596b86c36fd79e4bad7d SRA:SRR5112378 https://www.encodeproject.org/files/ENCFF331QQL/@@download/ENCFF331QQL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/eef43b89-d2a6-4fef-9c90-6cf8668493b7/ENCFF331QQL.fastq.gz low read depth ENCFF846YEH bam bam unfiltered alignments mm10 ENCSR999LAC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF331QQL/ 1325128080 ENCODE Processing Pipeline fdb55c4db047aeeec386f6b2db0c0e72 https://www.encodeproject.org/files/ENCFF846YEH/@@download/ENCFF846YEH.bam released s3://encode-public/2016/05/20/18c100ca-82a2-4a61-bc9f-43fa6395aa3c/ENCFF846YEH.bam ENCODE3 mm10 archived low read depth ENCFF847EJM bam bam alignments mm10 ENCSR999LAC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF331QQL/ 970731188 ENCODE Processing Pipeline cf27ca4a3a6a2906818293ba1f444012 https://www.encodeproject.org/files/ENCFF847EJM/@@download/ENCFF847EJM.bam released s3://encode-public/2016/05/20/fd81eba3-b5b9-4684-acd5-f82d0e600015/ENCFF847EJM.bam ENCODE3 mm10 archived low read depth ENCFF851VXV bam bam unfiltered alignments mm10 ENCSR999LAC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF331QQL/, /files/ENCFF309GLL/ 1308350303 ENCODE Processing Pipeline 038c2667e6820316ed1ba888ef4f2a47 https://www.encodeproject.org/files/ENCFF851VXV/@@download/ENCFF851VXV.bam released s3://encode-public/2020/10/07/d22e9f8c-dc84-463f-9512-e51b0a0ca1a7/ENCFF851VXV.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF021GMS bam bam alignments mm10 ENCSR999LAC Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-02-05 ENCODE see document 1 1_1 50 /files/ENCFF331QQL/, /files/ENCFF309GLL/ 1003154457 ENCODE Processing Pipeline 49d434369f7e278ab08e03f87a47e3be https://www.encodeproject.org/files/ENCFF021GMS/@@download/ENCFF021GMS.bam released s3://encode-public/2020/10/07/da52e838-a402-4425-9359-ff751b6fd88f/ENCFF021GMS.bam ENCODE4 v1.5.1 mm10 released low read depth ENCFF560CIZ fastq fastq reads ENCSR102QDH Control ChIP-seq /fly-donors/ENCDO893ABW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34379/'], '@type': ['Target', 'Item'], 'name': 'Hand-dmelanogaster', 'label': 'Hand', '@id': '/targets/Hand-dmelanogaster/', 'title': 'Hand (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a55a266-bfff-4624-9fa1-c583027b0f90', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 392558312 Kevin White, UChicago c7ee28a1c1713ca05993982e489b5901 https://www.encodeproject.org/files/ENCFF560CIZ/@@download/ENCFF560CIZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/7e19614b-78d9-4c48-b41e-5590375400f4/ENCFF560CIZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF373RDQ bam bam alignments dm3 ENCSR102QDH Control ChIP-seq /fly-donors/ENCDO893ABW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34379/'], '@type': ['Target', 'Item'], 'name': 'Hand-dmelanogaster', 'label': 'Hand', '@id': '/targets/Hand-dmelanogaster/', 'title': 'Hand (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a55a266-bfff-4624-9fa1-c583027b0f90', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF560CIZ/ 519349290 Kevin White, UChicago c041cb2eb050faac0e8fd20b6b6c5801 https://www.encodeproject.org/files/ENCFF373RDQ/@@download/ENCFF373RDQ.bam released s3://encode-public/2017/09/12/68fcb061-f2d9-4089-b89c-2ee7d5aff778/ENCFF373RDQ.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF865GWD bam bam alignments dm6 ENCSR102QDH Control ChIP-seq /fly-donors/ENCDO893ABW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34379/'], '@type': ['Target', 'Item'], 'name': 'Hand-dmelanogaster', 'label': 'Hand', '@id': '/targets/Hand-dmelanogaster/', 'title': 'Hand (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a55a266-bfff-4624-9fa1-c583027b0f90', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF560CIZ/ 511186775 Kevin White, UChicago 572869ea08d5d9b8bedde88f1d1c77fc https://www.encodeproject.org/files/ENCFF865GWD/@@download/ENCFF865GWD.bam released s3://encode-public/2017/09/13/5b29b4d7-1eab-4c02-8931-6b271055a292/ENCFF865GWD.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF366JYD bigWig bigWig signal of unique reads dm3 ENCSR102QDH Control ChIP-seq /fly-donors/ENCDO893ABW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34379/'], '@type': ['Target', 'Item'], 'name': 'Hand-dmelanogaster', 'label': 'Hand', '@id': '/targets/Hand-dmelanogaster/', 'title': 'Hand (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a55a266-bfff-4624-9fa1-c583027b0f90', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF373RDQ/ 15223102 Kevin White, UChicago 14d986db64957310fee1945e3eee0e07 https://www.encodeproject.org/files/ENCFF366JYD/@@download/ENCFF366JYD.bigWig released s3://encode-public/2017/09/14/c2a73e40-5511-4797-9910-3752d9eab1fb/ENCFF366JYD.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF403SDF bigWig bigWig read-depth normalized signal dm3 ENCSR102QDH Control ChIP-seq /fly-donors/ENCDO893ABW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34379/'], '@type': ['Target', 'Item'], 'name': 'Hand-dmelanogaster', 'label': 'Hand', '@id': '/targets/Hand-dmelanogaster/', 'title': 'Hand (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a55a266-bfff-4624-9fa1-c583027b0f90', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF373RDQ/ 15202629 Kevin White, UChicago 10b6995ae859f1f18568130704efea18 https://www.encodeproject.org/files/ENCFF403SDF/@@download/ENCFF403SDF.bigWig released s3://encode-public/2017/09/14/8057f63e-f05a-4138-9e3b-323db8bb95a3/ENCFF403SDF.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF417SMC bigWig bigWig signal of unique reads dm6 ENCSR102QDH Control ChIP-seq /fly-donors/ENCDO893ABW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34379/'], '@type': ['Target', 'Item'], 'name': 'Hand-dmelanogaster', 'label': 'Hand', '@id': '/targets/Hand-dmelanogaster/', 'title': 'Hand (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a55a266-bfff-4624-9fa1-c583027b0f90', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865GWD/ 17420900 Kevin White, UChicago 40c2cfb5748bb65a16342dfa2adc3bbc https://www.encodeproject.org/files/ENCFF417SMC/@@download/ENCFF417SMC.bigWig released s3://encode-public/2017/09/14/860df860-dfb0-4ce2-a3f6-b16030bf4c48/ENCFF417SMC.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF364HSW bigWig bigWig read-depth normalized signal dm6 ENCSR102QDH Control ChIP-seq /fly-donors/ENCDO893ABW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34379/'], '@type': ['Target', 'Item'], 'name': 'Hand-dmelanogaster', 'label': 'Hand', '@id': '/targets/Hand-dmelanogaster/', 'title': 'Hand (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3a55a266-bfff-4624-9fa1-c583027b0f90', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865GWD/ 17377742 Kevin White, UChicago 3faa960101a7d813c3c31e20d8934d06 https://www.encodeproject.org/files/ENCFF364HSW/@@download/ENCFF364HSW.bigWig released s3://encode-public/2017/09/14/73effbc9-fa33-4564-99be-a9f78b498e6f/ENCFF364HSW.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF380MFX bam bam redacted alignments GRCh38 ENCSR913DKN Control ChIP-seq /human-donors/ENCDO424KSR/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF681JAA/, /files/ENCFF643CGH/ 208970813 ENCODE Processing Pipeline 40c2f3ce6be0f07c0fb55c2fb9d6ebd7 https://www.encodeproject.org/files/ENCFF380MFX/@@download/ENCFF380MFX.bam released s3://encode-public/2017/11/09/19daf4fb-0e4b-40b5-9fb0-d5b71f2693ed/ENCFF380MFX.bam ENCODE3 GRCh38 archived low read depth ENCFF905MSG bam bam redacted unfiltered alignments GRCh38 ENCSR913DKN Control ChIP-seq /human-donors/ENCDO424KSR/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF681JAA/, /files/ENCFF643CGH/ 261434391 ENCODE Processing Pipeline ce3cedc85bf8904d8ef914be5913761a https://www.encodeproject.org/files/ENCFF905MSG/@@download/ENCFF905MSG.bam released s3://encode-public/2017/11/09/a9100def-7efa-4a8f-882d-aad7b251be32/ENCFF905MSG.bam ENCODE3 GRCh38 archived low read depth ENCFF328JCN bam bam redacted alignments hg19 ENCSR913DKN Control ChIP-seq /human-donors/ENCDO424KSR/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF681JAA/, /files/ENCFF807MUK/ 208687843 ENCODE Processing Pipeline 854ca0a3999041d619a371424c461f94 https://www.encodeproject.org/files/ENCFF328JCN/@@download/ENCFF328JCN.bam released s3://encode-public/2018/01/20/eed337e0-425f-41a3-b5db-0ed4e65aa8e7/ENCFF328JCN.bam ENCODE3 hg19 archived low read depth ENCFF052FJS bam bam redacted unfiltered alignments hg19 ENCSR913DKN Control ChIP-seq /human-donors/ENCDO424KSR/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF681JAA/, /files/ENCFF807MUK/ 256615624 ENCODE Processing Pipeline b69562da839bfae07d5bd001c5248512 https://www.encodeproject.org/files/ENCFF052FJS/@@download/ENCFF052FJS.bam released s3://encode-public/2018/01/20/99222578-418c-4d4f-8d38-1bf7f83da50e/ENCFF052FJS.bam ENCODE3 hg19 archived low read depth ENCFF154RJQ bam bam redacted alignments GRCh38 ENCSR913DKN Control ChIP-seq /human-donors/ENCDO424KSR/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF353JMK/, /files/ENCFF110MCL/ 1441064561 ENCODE Processing Pipeline acf8646fea01e3d0fd9a58de3f6fa78f https://www.encodeproject.org/files/ENCFF154RJQ/@@download/ENCFF154RJQ.bam released s3://encode-public/2021/01/28/85c90ee1-4152-4539-b34d-0f5e07ae2e89/ENCFF154RJQ.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF206EQF fastq fastq reads ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF014WAY/ 2051630388 Michael Snyder, Stanford 580bb19161fd8156f20e120aa0410be4 SRA:SRR8659941 https://www.encodeproject.org/files/ENCFF206EQF/@@download/ENCFF206EQF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/03e53403-d66e-4ee6-8a74-a012ca801687/ENCFF206EQF.fastq.gz ENCFF014WAY fastq fastq reads ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF206EQF/ 2058566068 Michael Snyder, Stanford b61fd270d0897eb3944e01c4445878d9 SRA:SRR8659941 https://www.encodeproject.org/files/ENCFF014WAY/@@download/ENCFF014WAY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/93c96497-d6a8-42d6-8921-e3dd6e848c98/ENCFF014WAY.fastq.gz ENCFF511HBN bam bam unfiltered alignments GRCh38 ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF014WAY/, /files/ENCFF206EQF/ 4555010281 ENCODE Processing Pipeline ca429859d768e3044cc4b3a7981f27d6 https://www.encodeproject.org/files/ENCFF511HBN/@@download/ENCFF511HBN.bam released s3://encode-public/2016/05/06/2cbd2ae1-5523-4eed-bfb3-e89194418758/ENCFF511HBN.bam ENCODE3 GRCh38 archived ENCFF303ZCH bam bam alignments GRCh38 ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF014WAY/, /files/ENCFF206EQF/ 3796987465 ENCODE Processing Pipeline 3d6d361f5e2442a740ee65037f7197c4 https://www.encodeproject.org/files/ENCFF303ZCH/@@download/ENCFF303ZCH.bam released s3://encode-public/2016/05/06/d8ae06d8-ae2e-4567-8a0e-7dda084d29da/ENCFF303ZCH.bam ENCODE3 GRCh38 archived ENCFF439DTF bam bam unfiltered alignments hg19 ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF014WAY/, /files/ENCFF206EQF/ 4548105164 ENCODE Processing Pipeline 7eae191996b93da10208ef88930e26a3 https://www.encodeproject.org/files/ENCFF439DTF/@@download/ENCFF439DTF.bam released s3://encode-public/2016/12/06/c7e6f7e5-25c8-4028-adce-5aeb01addc27/ENCFF439DTF.bam ENCODE3 hg19 archived ENCFF447ZJP bam bam alignments hg19 ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF014WAY/, /files/ENCFF206EQF/ 3788222040 ENCODE Processing Pipeline f6d89ddd3229b141bc706ac570567908 https://www.encodeproject.org/files/ENCFF447ZJP/@@download/ENCFF447ZJP.bam released s3://encode-public/2016/12/06/2dec79a0-c2ec-4815-9fe0-0538dfd29529/ENCFF447ZJP.bam ENCODE3 hg19 archived ENCFF919MZB bam bam unfiltered alignments GRCh38 ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF014WAY/, /files/ENCFF206EQF/, /files/ENCFF110MCL/ 4541535305 ENCODE Processing Pipeline b0ecc4dbdddebeb53b2d9c366cfb9c5f https://www.encodeproject.org/files/ENCFF919MZB/@@download/ENCFF919MZB.bam released s3://encode-public/2020/06/13/d824d744-2bc0-4796-930a-ea05c4c70657/ENCFF919MZB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF940SNX bam bam alignments GRCh38 ENCSR517ZYR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF014WAY/, /files/ENCFF206EQF/, /files/ENCFF110MCL/ 3727531158 ENCODE Processing Pipeline 3a5752630584d949c3ead1c1ef4dc188 https://www.encodeproject.org/files/ENCFF940SNX/@@download/ENCFF940SNX.bam released s3://encode-public/2020/06/13/7c2f9736-01e3-41be-ba9c-ed13777ce9a8/ENCFF940SNX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF392GXL fastq fastq reads ENCSR954ZQC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 4669413114 Roderic Guigo, CRG 1d906b26ab2baff0cf18f41eb9c25b64 https://www.encodeproject.org/files/ENCFF392GXL/@@download/ENCFF392GXL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/ced4a16a-e38e-409a-ac9b-d52057daf54f/ENCFF392GXL.fastq.gz ENCFF159DAO fastq fastq reads ENCSR954ZQC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4065827075 Roderic Guigo, CRG 518ff0c80a3fd60344533f0b229aacd6 https://www.encodeproject.org/files/ENCFF159DAO/@@download/ENCFF159DAO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/4359ae4e-e318-470a-853c-f2bdf42de18e/ENCFF159DAO.fastq.gz ENCFF729WLL bam bam alignments GRCh38 ENCSR954ZQC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF159DAO/ 4385477317 Roderic Guigo, CRG 6d297b63bffdd8474727551a5f049431 https://www.encodeproject.org/files/ENCFF729WLL/@@download/ENCFF729WLL.bam released s3://encode-public/2022/01/27/79e9c295-7ae1-4888-97cf-d14e6c7897da/ENCFF729WLL.bam Lab custom GRCh38 released ENCFF477YTC bam bam alignments GRCh38 ENCSR954ZQC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF392GXL/ 4324997277 Roderic Guigo, CRG 6db23caa9cc007f3c8f7c0d0da3bdba5 https://www.encodeproject.org/files/ENCFF477YTC/@@download/ENCFF477YTC.bam released s3://encode-public/2022/01/27/38cce771-c7e8-464c-bd8d-4146cf39f745/ENCFF477YTC.bam Lab custom GRCh38 released ENCFF034BCR bam bam unfiltered alignments hg19 ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF717YHU/, /files/ENCFF807MUK/, /files/ENCFF031XFH/ 3285606789 ENCODE Processing Pipeline ed9b939e570fe4ca58e26a7b25dbe70f https://www.encodeproject.org/files/ENCFF034BCR/@@download/ENCFF034BCR.bam released s3://encode-public/2018/02/21/b1e066c7-35ed-4ee3-97aa-9aa1537b37bb/ENCFF034BCR.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF717YHU fastq fastq reads ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF031XFH/ 1410862794 Michael Snyder, Stanford b856b23dcbe57f1f3a6251e6b71fe9b6 SRA:SRR5111327 https://www.encodeproject.org/files/ENCFF717YHU/@@download/ENCFF717YHU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/69acba96-5856-4744-b1e4-85101956ecde/ENCFF717YHU.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF031XFH fastq fastq reads ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF717YHU/ 1484587786 Michael Snyder, Stanford fc05eb56346872ceb1924edda5375836 SRA:SRR5111327 https://www.encodeproject.org/files/ENCFF031XFH/@@download/ENCFF031XFH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/aafe303c-49d8-497d-9745-8c2ad1f08a73/ENCFF031XFH.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF189PKR bam bam alignments hg19 ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF717YHU/, /files/ENCFF807MUK/, /files/ENCFF031XFH/ 2772355576 ENCODE Processing Pipeline 7438e6413c04d106f8cfc0a74bf684e3 https://www.encodeproject.org/files/ENCFF189PKR/@@download/ENCFF189PKR.bam released s3://encode-public/2015/12/09/d9f3ec07-d52e-4d5a-8ec6-5282346a5f26/ENCFF189PKR.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF819UEP bam bam unfiltered alignments GRCh38 ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF717YHU/, /files/ENCFF031XFH/, /files/ENCFF643CGH/ 3291931781 ENCODE Processing Pipeline 0e19de013e79242629616b9f6bee5f3b https://www.encodeproject.org/files/ENCFF819UEP/@@download/ENCFF819UEP.bam released s3://encode-public/2016/05/06/e25fcc0e-7d78-42c8-89e0-de931659e78c/ENCFF819UEP.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF002WSA bam bam alignments GRCh38 ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF717YHU/, /files/ENCFF031XFH/, /files/ENCFF643CGH/ 2773548594 ENCODE Processing Pipeline 5b16aac88583a5a5996421d57e17d0c7 https://www.encodeproject.org/files/ENCFF002WSA/@@download/ENCFF002WSA.bam released s3://encode-public/2016/05/06/ae39d071-1cd1-49bd-84fe-5eb70a258e29/ENCFF002WSA.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF102AJT bam bam unfiltered alignments GRCh38 ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF717YHU/, /files/ENCFF031XFH/ 3290354786 ENCODE Processing Pipeline 9a6805408320029df1e6b47e6ad72749 https://www.encodeproject.org/files/ENCFF102AJT/@@download/ENCFF102AJT.bam released s3://encode-public/2020/06/13/e3104ff1-c8f0-46b7-8537-1fa03f4f9517/ENCFF102AJT.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF775YSN bam bam alignments GRCh38 ENCSR256DQC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8463/'], '@type': ['Target', 'Item'], 'name': 'TEAD2-human', 'label': 'TEAD2', '@id': '/targets/TEAD2-human/', 'title': 'TEAD2 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'ded40ef5-dfec-4ed1-b8af-263c73bedc57', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF717YHU/, /files/ENCFF031XFH/ 2699424737 ENCODE Processing Pipeline 642657488c5ccb5ed205f91ac58c4e61 https://www.encodeproject.org/files/ENCFF775YSN/@@download/ENCFF775YSN.bam released s3://encode-public/2020/06/13/a53b1e1e-6ad0-42a8-aefd-00ae82febbc9/ENCFF775YSN.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF722FYZ fastq fastq reads ENCSR398FFO Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 643066533 Kevin White, UChicago 67efb258580faa34a6615f42275595d2 https://www.encodeproject.org/files/ENCFF722FYZ/@@download/ENCFF722FYZ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/16/aa1e425c-b75c-4f14-b8d6-f202a3229785/ENCFF722FYZ.fastq.gz ENCFF252MYD bam bam alignments dm3 ENCSR398FFO Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF059UHX/, /files/ENCFF722FYZ/ 831440135 Kevin White, UChicago 08d97dac08a056fd95c26148ff3fc54d https://www.encodeproject.org/files/ENCFF252MYD/@@download/ENCFF252MYD.bam released s3://encode-public/2017/06/19/aecd900b-9be7-4c22-81f6-86fb943637aa/ENCFF252MYD.bam Lab custom dm3 archived ENCFF029XUF bam bam alignments dm6 ENCSR398FFO Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 36 /files/ENCFF479RCH/, /files/ENCFF722FYZ/ 828503432 Kevin White, UChicago 51fd8820db2ce0e4aa45c1c868fcc82d https://www.encodeproject.org/files/ENCFF029XUF/@@download/ENCFF029XUF.bam released s3://encode-public/2017/06/28/2cf23ed8-21be-40bd-925b-ff2d51d84d9f/ENCFF029XUF.bam Lab custom dm6 released ENCFF579HFT bigWig bigWig signal of unique reads dm3 ENCSR398FFO Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF252MYD/ 15545475 Kevin White, UChicago 02e4307c1e8d87afa8a06955127c54f9 https://www.encodeproject.org/files/ENCFF579HFT/@@download/ENCFF579HFT.bigWig released s3://encode-public/2017/06/29/b32a01b3-8909-4b47-a05c-8758a9d68ed1/ENCFF579HFT.bigWig Lab custom dm3 archived ENCFF457ODB bigWig bigWig read-depth normalized signal dm3 ENCSR398FFO Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF252MYD/ 15580591 Kevin White, UChicago 2df26e674ba404989ced619ef38365ed https://www.encodeproject.org/files/ENCFF457ODB/@@download/ENCFF457ODB.bigWig released s3://encode-public/2017/06/29/d5ecab04-7e4d-4b68-bebd-3fbf7aebda90/ENCFF457ODB.bigWig Lab custom dm3 archived ENCFF420JJR bigWig bigWig read-depth normalized signal dm6 ENCSR398FFO Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF029XUF/ 17720558 Kevin White, UChicago 646b914f4f8ef90819aed56451a1ce92 https://www.encodeproject.org/files/ENCFF420JJR/@@download/ENCFF420JJR.bigWig released s3://encode-public/2017/06/30/5bed1843-c4ec-4db2-841f-168504dce24e/ENCFF420JJR.bigWig Lab custom dm6 released ENCFF328INC bigWig bigWig signal of unique reads dm6 ENCSR398FFO Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF029XUF/ 17686426 Kevin White, UChicago 8bedc853c8b4e3d79bd940b1989550bb https://www.encodeproject.org/files/ENCFF328INC/@@download/ENCFF328INC.bigWig released s3://encode-public/2017/06/30/38595ddc-3625-4f2f-a03c-a3b874b0c1fc/ENCFF328INC.bigWig Lab custom dm6 released ENCFF437SAO bam bam unfiltered alignments hg19 ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF673IEY/, /files/ENCFF807MUK/, /files/ENCFF530PGY/ 2252466336 ENCODE Processing Pipeline 73bfff67f5311df583c129247834e304 https://www.encodeproject.org/files/ENCFF437SAO/@@download/ENCFF437SAO.bam released s3://encode-public/2018/02/22/e29174cd-cd82-4fff-9ab2-2fd669bf039d/ENCFF437SAO.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF530PGY fastq fastq reads ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1045616253 Kevin White, UChicago 3016d27c7057d9e5e389a2d721b8f5d7 SRA:SRR14103203 https://www.encodeproject.org/files/ENCFF530PGY/@@download/ENCFF530PGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF268CSZ/, /files/ENCFF043SJU/ released s3://encode-public/2016/03/14/d1465e2c-8228-49a5-9a96-9fe38612cb25/ENCFF530PGY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF673IEY fastq fastq reads ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1054720846 Kevin White, UChicago 29b70b64d4bde27c52dee235caffa4c0 SRA:SRR14103204 https://www.encodeproject.org/files/ENCFF673IEY/@@download/ENCFF673IEY.fastq.gz Illumina HiSeq 2500 /files/ENCFF268CSZ/, /files/ENCFF043SJU/ released s3://encode-public/2016/03/15/3faec10f-9d94-41e7-8ae9-8606b462d60d/ENCFF673IEY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF273YNM bam bam alignments hg19 ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF673IEY/, /files/ENCFF807MUK/, /files/ENCFF530PGY/ 1751211633 ENCODE Processing Pipeline d30bd3fa5f8b44696887ac62fd1ef06e https://www.encodeproject.org/files/ENCFF273YNM/@@download/ENCFF273YNM.bam released s3://encode-public/2016/04/23/ce9ae42e-c7c8-436b-9069-5e471e6abe6d/ENCFF273YNM.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF612TGS bam bam unfiltered alignments GRCh38 ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF673IEY/, /files/ENCFF643CGH/, /files/ENCFF530PGY/ 2261840140 ENCODE Processing Pipeline f679e6c1e2e01d9c34b3c7e663f13c11 https://www.encodeproject.org/files/ENCFF612TGS/@@download/ENCFF612TGS.bam released s3://encode-public/2016/05/06/80d25006-a8c4-4a60-a80e-ecac938f6368/ENCFF612TGS.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF330GSW bam bam alignments GRCh38 ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF673IEY/, /files/ENCFF643CGH/, /files/ENCFF530PGY/ 1750591097 ENCODE Processing Pipeline 7f17ecc768fd316e5f677a44a1e2416a https://www.encodeproject.org/files/ENCFF330GSW/@@download/ENCFF330GSW.bam released s3://encode-public/2016/05/06/be2da43a-c5d9-41db-b9f4-e723a1cb6f5f/ENCFF330GSW.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF525AOC bam bam alignments GRCh38 ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF530PGY/, /files/ENCFF110MCL/, /files/ENCFF673IEY/ 1833424945 ENCODE Processing Pipeline ebbeab30d3f3986de5d273b3eb1c68e2 https://www.encodeproject.org/files/ENCFF525AOC/@@download/ENCFF525AOC.bam released s3://encode-public/2020/10/27/dfb32e10-0de1-4c04-bb30-b582e2a5cf3c/ENCFF525AOC.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF538OHG bam bam unfiltered alignments GRCh38 ENCSR018OYI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ELK1'], 'aliases': ['michael-snyder:TS-133'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2002/'], '@type': ['Target', 'Item'], 'label': 'ELK1', 'title': 'ELK1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a5a67807-0bd9-45fe-89e3-5e4eb5c8dc24', 'schema_version': '14', 'name': 'ELK1-human', '@id': '/targets/ELK1-human/', 'status': 'released'} hg19 X 10280201 10501645 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF530PGY/, /files/ENCFF110MCL/, /files/ENCFF673IEY/ 2238677772 ENCODE Processing Pipeline 0130713e335022cbb86268025845f92b https://www.encodeproject.org/files/ENCFF538OHG/@@download/ENCFF538OHG.bam released s3://encode-public/2020/10/27/c88efd97-1ccb-4310-beca-ea66a29c0912/ENCFF538OHG.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF392LUJ fastq fastq reads ENCSR455AFK Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 4733341850 Roderic Guigo, CRG a5db3939a19f5edb4d64753faadd2a50 https://www.encodeproject.org/files/ENCFF392LUJ/@@download/ENCFF392LUJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/cb0474d9-3519-45ac-967a-3e7a542dc4d3/ENCFF392LUJ.fastq.gz ENCFF641ZFS fastq fastq reads ENCSR455AFK Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4151258329 Roderic Guigo, CRG 46ec53b8df468f6198bbca7d57ef131f https://www.encodeproject.org/files/ENCFF641ZFS/@@download/ENCFF641ZFS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/40e761c1-6c20-4240-8528-bec446027e37/ENCFF641ZFS.fastq.gz ENCFF758CCK bam bam alignments GRCh38 ENCSR455AFK Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF641ZFS/ 4572290033 Roderic Guigo, CRG b5b6ee1a85678d7b6e3f1b343372fecd https://www.encodeproject.org/files/ENCFF758CCK/@@download/ENCFF758CCK.bam released s3://encode-public/2022/01/27/ed693c69-e69c-4ac9-966d-04ea6b3b6ef0/ENCFF758CCK.bam Lab custom GRCh38 released ENCFF836QCS bam bam alignments GRCh38 ENCSR455AFK Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF392LUJ/ 4673717099 Roderic Guigo, CRG 879c85117d9fb5f47bd56f82693ca5e7 https://www.encodeproject.org/files/ENCFF836QCS/@@download/ENCFF836QCS.bam released s3://encode-public/2022/01/27/9604c21d-7fec-4933-a280-204589b1c34f/ENCFF836QCS.bam Lab custom GRCh38 released ENCFF584XFW fastq fastq reads ENCSR023XBU Control ChIP-seq /fly-donors/ENCDO867KTL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41355/'], '@type': ['Target', 'Item'], 'name': 'CG31388-dmelanogaster', 'label': 'CG31388', '@id': '/targets/CG31388-dmelanogaster/', 'title': 'CG31388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6bfb948d-ae63-4421-a2bf-6abf8a0e9ef0', 'status': 'released'} dm3 3R 7049579 7071250 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 654894636 Kevin White, UChicago 2d4b47589801d1404d7649221ffaa5bf https://www.encodeproject.org/files/ENCFF584XFW/@@download/ENCFF584XFW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/0d63f71e-e46b-470f-9331-a7f811162349/ENCFF584XFW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF196YME bam bam alignments dm3 ENCSR023XBU Control ChIP-seq /fly-donors/ENCDO867KTL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41355/'], '@type': ['Target', 'Item'], 'name': 'CG31388-dmelanogaster', 'label': 'CG31388', '@id': '/targets/CG31388-dmelanogaster/', 'title': 'CG31388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6bfb948d-ae63-4421-a2bf-6abf8a0e9ef0', 'status': 'released'} dm3 3R 7049579 7071250 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF584XFW/ 795225564 Kevin White, UChicago 6aa68c478211f1bc11e7a327ebdd2637 https://www.encodeproject.org/files/ENCFF196YME/@@download/ENCFF196YME.bam released s3://encode-public/2016/04/10/716ace9c-a2a4-4df0-8699-09e091124c9c/ENCFF196YME.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF002HKZ bigWig bigWig read-depth normalized signal dm3 ENCSR023XBU Control ChIP-seq /fly-donors/ENCDO867KTL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41355/'], '@type': ['Target', 'Item'], 'name': 'CG31388-dmelanogaster', 'label': 'CG31388', '@id': '/targets/CG31388-dmelanogaster/', 'title': 'CG31388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6bfb948d-ae63-4421-a2bf-6abf8a0e9ef0', 'status': 'released'} dm3 3R 7049579 7071250 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF196YME/ 15368032 Kevin White, UChicago d618cab7d36b5a344ee25849b84601ee https://www.encodeproject.org/files/ENCFF002HKZ/@@download/ENCFF002HKZ.bigWig released s3://encode-public/2016/04/11/3c207671-a155-4acc-827d-e60c6d6032d0/ENCFF002HKZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF949XIY bigWig bigWig signal of unique reads dm3 ENCSR023XBU Control ChIP-seq /fly-donors/ENCDO867KTL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41355/'], '@type': ['Target', 'Item'], 'name': 'CG31388-dmelanogaster', 'label': 'CG31388', '@id': '/targets/CG31388-dmelanogaster/', 'title': 'CG31388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6bfb948d-ae63-4421-a2bf-6abf8a0e9ef0', 'status': 'released'} dm3 3R 7049579 7071250 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF196YME/ 15319159 Kevin White, UChicago ebf23947391756a35c7334408c3de8ab https://www.encodeproject.org/files/ENCFF949XIY/@@download/ENCFF949XIY.bigWig released s3://encode-public/2016/04/11/78e3b9ea-513f-4829-9f1b-da3a1ac54130/ENCFF949XIY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF705ONB bam bam alignments dm6 ENCSR023XBU Control ChIP-seq /fly-donors/ENCDO867KTL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41355/'], '@type': ['Target', 'Item'], 'name': 'CG31388-dmelanogaster', 'label': 'CG31388', '@id': '/targets/CG31388-dmelanogaster/', 'title': 'CG31388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6bfb948d-ae63-4421-a2bf-6abf8a0e9ef0', 'status': 'released'} dm3 3R 7049579 7071250 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF584XFW/ 792016546 Kevin White, UChicago 8f7580b1347bb97799dab6fe9f42314d https://www.encodeproject.org/files/ENCFF705ONB/@@download/ENCFF705ONB.bam released s3://encode-public/2016/04/21/8e433358-8821-477f-8b31-6004ab1dff4a/ENCFF705ONB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF039XRK bigWig bigWig signal of unique reads dm6 ENCSR023XBU Control ChIP-seq /fly-donors/ENCDO867KTL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41355/'], '@type': ['Target', 'Item'], 'name': 'CG31388-dmelanogaster', 'label': 'CG31388', '@id': '/targets/CG31388-dmelanogaster/', 'title': 'CG31388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6bfb948d-ae63-4421-a2bf-6abf8a0e9ef0', 'status': 'released'} dm3 3R 7049579 7071250 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF705ONB/ 17432818 Kevin White, UChicago 6d2b9bad4b713f132334ad84385d0933 https://www.encodeproject.org/files/ENCFF039XRK/@@download/ENCFF039XRK.bigWig released s3://encode-public/2016/06/20/c33653eb-c29d-47e2-a168-9bd2848fb14e/ENCFF039XRK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF680YRO bigWig bigWig read-depth normalized signal dm6 ENCSR023XBU Control ChIP-seq /fly-donors/ENCDO867KTL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41355/'], '@type': ['Target', 'Item'], 'name': 'CG31388-dmelanogaster', 'label': 'CG31388', '@id': '/targets/CG31388-dmelanogaster/', 'title': 'CG31388 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6bfb948d-ae63-4421-a2bf-6abf8a0e9ef0', 'status': 'released'} dm3 3R 7049579 7071250 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF705ONB/ 17506444 Kevin White, UChicago 169ca1e18871db18e4d40e1df04aaef6 https://www.encodeproject.org/files/ENCFF680YRO/@@download/ENCFF680YRO.bigWig released s3://encode-public/2016/06/20/0ec97e22-260c-43a8-b3c2-b1192db0e4b6/ENCFF680YRO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF612KDN fastq fastq reads ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 610073369 Tim Reddy, Duke 4210ed06eb7e6c5636f0cb69ac8cc946 SRA:SRR5092974 https://www.encodeproject.org/files/ENCFF612KDN/@@download/ENCFF612KDN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/30/34cb85e8-26cf-4d97-90a7-dd2e1352e544/ENCFF612KDN.fastq.gz ENCFF524OKJ fastq fastq reads ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 804989873 Tim Reddy, Duke 89d9b26e153824bebb1c5aad61815618 SRA:SRR5092975 https://www.encodeproject.org/files/ENCFF524OKJ/@@download/ENCFF524OKJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/e3880aa9-e9ba-4114-8ba1-f1cf981147f4/ENCFF524OKJ.fastq.gz ENCFF232NPZ fastq fastq reads ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 806205721 Tim Reddy, Duke 948a181d40977cbeeb365f9f2407c2a3 SRA:SRR5092973 https://www.encodeproject.org/files/ENCFF232NPZ/@@download/ENCFF232NPZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/f04ef533-f73f-4d9f-acff-8b32cf5d6e4b/ENCFF232NPZ.fastq.gz ENCFF166FHD bam bam alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF524OKJ/ 815664866 Tim Reddy, Duke 8944421a06716f5919950524aad53846 https://www.encodeproject.org/files/ENCFF166FHD/@@download/ENCFF166FHD.bam released s3://encode-public/2016/05/31/f9f2a801-f539-4ed3-8007-7ec4994d8bc8/ENCFF166FHD.bam Lab custom GRCh38 archived ENCFF686FKZ bam bam alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF612KDN/ 675131993 Tim Reddy, Duke 9d09b755ffd7dcef32d20668b7d75132 https://www.encodeproject.org/files/ENCFF686FKZ/@@download/ENCFF686FKZ.bam released s3://encode-public/2016/05/31/4f988486-0c46-41b0-820e-8232715c78af/ENCFF686FKZ.bam Lab custom GRCh38 archived ENCFF221EVX bam bam alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF232NPZ/ 880765975 Tim Reddy, Duke 753fcfea564b9cdc4e7086cebb2b5c73 https://www.encodeproject.org/files/ENCFF221EVX/@@download/ENCFF221EVX.bam released s3://encode-public/2016/05/31/5229674d-1b69-44cc-9353-dffb72783f85/ENCFF221EVX.bam Lab custom GRCh38 archived ENCFF794HQS bam bam unfiltered alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF524OKJ/ 1068807296 ENCODE Processing Pipeline b817ebcd8afeed734551fc1c424bcdde https://www.encodeproject.org/files/ENCFF794HQS/@@download/ENCFF794HQS.bam released s3://encode-public/2020/09/29/5360b421-0e1a-4bb8-9587-1301f537df1e/ENCFF794HQS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF107GCY bam bam unfiltered alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF232NPZ/ 1100227090 ENCODE Processing Pipeline ce3e932f62c90f0aadbad4695a1b225f https://www.encodeproject.org/files/ENCFF107GCY/@@download/ENCFF107GCY.bam released s3://encode-public/2020/09/29/a1cac329-c0ec-4fda-95b3-ac76f58fca76/ENCFF107GCY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF333BTQ bam bam alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF612KDN/ 704965028 ENCODE Processing Pipeline d912d423773a05859a63309da8776667 https://www.encodeproject.org/files/ENCFF333BTQ/@@download/ENCFF333BTQ.bam released s3://encode-public/2020/09/29/1a0f6d4f-5030-4bcb-8640-43c2a81e6f0e/ENCFF333BTQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF299IDB bam bam unfiltered alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF612KDN/ 831853045 ENCODE Processing Pipeline 5794961cbecf4bf927f665305cbf2f88 https://www.encodeproject.org/files/ENCFF299IDB/@@download/ENCFF299IDB.bam released s3://encode-public/2020/09/29/6be41b09-6d1d-4a0a-b65d-fee12ad267cb/ENCFF299IDB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF374ZTE bam bam alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF524OKJ/ 853869967 ENCODE Processing Pipeline d13bb39e82bf8adc937db1c4c8076612 https://www.encodeproject.org/files/ENCFF374ZTE/@@download/ENCFF374ZTE.bam released s3://encode-public/2020/09/29/3fa772c6-b642-4a5d-b1e7-e403414f4eb9/ENCFF374ZTE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF690OST bam bam alignments GRCh38 ENCSR549SVK Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF232NPZ/ 929149321 ENCODE Processing Pipeline 050c13bc8a3466e4dfacc89fe0e65a93 https://www.encodeproject.org/files/ENCFF690OST/@@download/ENCFF690OST.bam released s3://encode-public/2020/09/29/e9704fbf-6f6b-41ed-9709-09433b87e2e5/ENCFF690OST.bam ENCODE4 v1.5.1 GRCh38 released ENCFF233ZMV fastq fastq reads ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 2656542418 Kevin White, UChicago 25222b9e4282096b5fc3505096ab0ce0 https://www.encodeproject.org/files/ENCFF233ZMV/@@download/ENCFF233ZMV.fastq.gz Illumina HiSeq 2500 /files/ENCFF456IOD/ released s3://encode-public/2016/08/22/364c8f3b-4255-404c-91fd-173f6a873177/ENCFF233ZMV.fastq.gz ENCFF494CUE fastq fastq reads ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 2 2_1 50 single-ended 2448341283 Kevin White, UChicago d9f895509ec3864f8bb96a14b2a6e740 https://www.encodeproject.org/files/ENCFF494CUE/@@download/ENCFF494CUE.fastq.gz Illumina HiSeq 2500 /files/ENCFF291REP/ released s3://encode-public/2017/06/16/f0d7e90c-fd0b-4ae8-9d3e-b7e2a8e90337/ENCFF494CUE.fastq.gz ENCFF620WUR bam bam alignments dm3 ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF059UHX/, /files/ENCFF494CUE/, /files/ENCFF233ZMV/ 479 Kevin White, UChicago 9db72f1bd4de99333558165b71b9d574 https://www.encodeproject.org/files/ENCFF620WUR/@@download/ENCFF620WUR.bam released s3://encode-public/2017/07/05/3e2b1206-7679-4a45-b9a9-08ba39958357/ENCFF620WUR.bam Lab custom dm3 archived ENCFF996ITS bam bam alignments dm6 ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 50 /files/ENCFF479RCH/, /files/ENCFF494CUE/, /files/ENCFF233ZMV/ 6261925813 Kevin White, UChicago 03d746f0acfe4a5da192b39b99bedb6f https://www.encodeproject.org/files/ENCFF996ITS/@@download/ENCFF996ITS.bam released s3://encode-public/2017/07/06/4d93e051-5cf6-4aea-9fa4-cab97d56b724/ENCFF996ITS.bam Lab custom dm6 released ENCFF086DLN bigWig bigWig read-depth normalized signal dm3 ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF620WUR/ 16107512 Kevin White, UChicago 9edf08469673f5bfdbf9736f3388bf03 https://www.encodeproject.org/files/ENCFF086DLN/@@download/ENCFF086DLN.bigWig released s3://encode-public/2017/07/07/ce648041-d8ae-4b9c-ae41-4316ca66682d/ENCFF086DLN.bigWig Lab custom dm3 archived ENCFF709KPN bigWig bigWig signal of unique reads dm3 ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF620WUR/ 16070787 Kevin White, UChicago 6fff45475d23a065acdc31f02e5f0d78 https://www.encodeproject.org/files/ENCFF709KPN/@@download/ENCFF709KPN.bigWig released s3://encode-public/2017/07/07/121dd66e-7a43-4c38-9828-8f104a0bc869/ENCFF709KPN.bigWig Lab custom dm3 archived ENCFF513MWD bigWig bigWig signal of unique reads dm6 ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF996ITS/ 18045218 Kevin White, UChicago ca6a0c8f16a4a0bbf875cc3bd19fc3a5 https://www.encodeproject.org/files/ENCFF513MWD/@@download/ENCFF513MWD.bigWig released s3://encode-public/2017/07/07/89028926-5035-4c74-9caa-a350fb8e8541/ENCFF513MWD.bigWig Lab custom dm6 released ENCFF947BLS bigWig bigWig read-depth normalized signal dm6 ENCSR721ZML Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF996ITS/ 18112798 Kevin White, UChicago 7d8626d12d924c8c0654f9667e88c422 https://www.encodeproject.org/files/ENCFF947BLS/@@download/ENCFF947BLS.bigWig released s3://encode-public/2017/07/07/5fca9754-8d16-44af-b650-61e3af51b24b/ENCFF947BLS.bigWig Lab custom dm6 released ENCFF805UIJ fastq fastq reads ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF333IGR/ 1250561611 Michael Snyder, Stanford 04b5379888a9fb90a815bd047c98526f SRA:SRR6213596 https://www.encodeproject.org/files/ENCFF805UIJ/@@download/ENCFF805UIJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/8342d3d0-a2d4-4b8e-be44-52565c79225d/ENCFF805UIJ.fastq.gz low read depth ENCFF333IGR fastq fastq reads ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF805UIJ/ 1248494578 Michael Snyder, Stanford 99ec44c09458abefe1f23304e408b250 SRA:SRR6213596 https://www.encodeproject.org/files/ENCFF333IGR/@@download/ENCFF333IGR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/a97b018e-47ab-4186-bdf4-3050db522da1/ENCFF333IGR.fastq.gz low read depth ENCFF224CTU bam bam unfiltered alignments GRCh38 ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF805UIJ/, /files/ENCFF333IGR/, /files/ENCFF643CGH/ 2885542069 ENCODE Processing Pipeline 050dbec94e315aaf684c12051d6d1357 https://www.encodeproject.org/files/ENCFF224CTU/@@download/ENCFF224CTU.bam released s3://encode-public/2016/05/06/89407ce6-45d6-4008-8de6-b13563258869/ENCFF224CTU.bam ENCODE3 GRCh38 archived low read depth ENCFF752HGK bam bam alignments GRCh38 ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF805UIJ/, /files/ENCFF333IGR/, /files/ENCFF643CGH/ 2439991126 ENCODE Processing Pipeline b74ac2dd91f122630f2ce4aeb8010867 https://www.encodeproject.org/files/ENCFF752HGK/@@download/ENCFF752HGK.bam released s3://encode-public/2016/05/06/2cc404f8-81d9-4565-858f-44de3f9e1faf/ENCFF752HGK.bam ENCODE3 GRCh38 archived low read depth ENCFF168WLI bam bam unfiltered alignments hg19 ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF805UIJ/, /files/ENCFF333IGR/, /files/ENCFF807MUK/ 2881497362 ENCODE Processing Pipeline 4d4be529e7b26210218b7db880b4b0f4 https://www.encodeproject.org/files/ENCFF168WLI/@@download/ENCFF168WLI.bam released s3://encode-public/2016/12/06/abdd3abf-1af0-4115-bffb-f36300b8c13c/ENCFF168WLI.bam ENCODE3 hg19 archived low read depth ENCFF570YAA bam bam alignments hg19 ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF805UIJ/, /files/ENCFF333IGR/, /files/ENCFF807MUK/ 2436667129 ENCODE Processing Pipeline 28b26f278671ffbfbc84e09184ee4f5b https://www.encodeproject.org/files/ENCFF570YAA/@@download/ENCFF570YAA.bam released s3://encode-public/2016/12/06/0e40dbf7-9b42-4648-965d-a25625403f01/ENCFF570YAA.bam ENCODE3 hg19 archived low read depth ENCFF827SPR bam bam unfiltered alignments GRCh38 ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF805UIJ/, /files/ENCFF333IGR/ 2873569036 ENCODE Processing Pipeline 953e34085a22ff16028c137117e6a8d8 https://www.encodeproject.org/files/ENCFF827SPR/@@download/ENCFF827SPR.bam released s3://encode-public/2020/06/02/4f635bbd-ff71-4330-9656-afcc284fb8c3/ENCFF827SPR.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF850URM bam bam alignments GRCh38 ENCSR457NQR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF805UIJ/, /files/ENCFF333IGR/ 2397172651 ENCODE Processing Pipeline 1823c64c932df7702588257407f24cc4 https://www.encodeproject.org/files/ENCFF850URM/@@download/ENCFF850URM.bam released s3://encode-public/2020/06/02/5e870ad6-0054-48b0-a805-bc7af2d5a04e/ENCFF850URM.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF437OBX fastq fastq reads ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 single-ended 1056505740 Bradley Bernstein, Broad 1549d77af32a8cb71fb7a04a9dac0a32 SRA:SRR5339321 https://www.encodeproject.org/files/ENCFF437OBX/@@download/ENCFF437OBX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/21/3be6dc96-b78f-4d23-9fc8-1792ba792d00/ENCFF437OBX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF885QUM bam bam unfiltered alignments GRCh38 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF437OBX/ 1263216599 ENCODE Processing Pipeline 1505ede4f539e47561dbdbe7259736a9 https://www.encodeproject.org/files/ENCFF885QUM/@@download/ENCFF885QUM.bam archived s3://encode-public/2016/06/01/a3bf3b6b-1b28-4351-b1f4-d2ddc784af0e/ENCFF885QUM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF495XEX bam bam alignments GRCh38 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF437OBX/ 991191748 ENCODE Processing Pipeline 04fbd238f3de3fb222ca3cd7aa19c6a0 https://www.encodeproject.org/files/ENCFF495XEX/@@download/ENCFF495XEX.bam archived s3://encode-public/2016/06/01/8701a1eb-7b3b-4bfb-a9d9-7c304ebbc150/ENCFF495XEX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF727CGN bam bam alignments hg19 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF437OBX/ 990144794 ENCODE Processing Pipeline abbbec7572ea8b3a17534355a97e22e9 https://www.encodeproject.org/files/ENCFF727CGN/@@download/ENCFF727CGN.bam archived s3://encode-public/2016/10/26/ada92d2b-7a0a-45a5-aef7-d67159de7cb9/ENCFF727CGN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF097IYV bam bam unfiltered alignments hg19 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF437OBX/ 1260157723 ENCODE Processing Pipeline 98c0038a9d3ac3f0a8486ec2d0eddc9c https://www.encodeproject.org/files/ENCFF097IYV/@@download/ENCFF097IYV.bam archived s3://encode-public/2016/10/26/68410528-2aad-44fb-880f-54061196828d/ENCFF097IYV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF265JXW fastq fastq reads ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 single-ended 1487654446 Bradley Bernstein, Broad 085a1b199be1a70e897e14b2effc4ead SRA:SRR5339322 https://www.encodeproject.org/files/ENCFF265JXW/@@download/ENCFF265JXW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/9d96730a-ecbe-4113-a2aa-7659ca1c6f64/ENCFF265JXW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF297UFN fastq fastq reads ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 single-ended 1468150125 Bradley Bernstein, Broad 8196f4f5502b52fe7c979c3a831b12a7 SRA:SRR5339323 https://www.encodeproject.org/files/ENCFF297UFN/@@download/ENCFF297UFN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/967248e4-8e05-4d7b-b034-3308966d66ac/ENCFF297UFN.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF634UHG bam bam alignments GRCh38 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF437OBX/, /files/ENCFF643CGH/, /files/ENCFF297UFN/, /files/ENCFF265JXW/ 2457935250 ENCODE Processing Pipeline 5e5fd6f862c89aaa835b50b36cb84e1e https://www.encodeproject.org/files/ENCFF634UHG/@@download/ENCFF634UHG.bam released s3://encode-public/2017/02/03/68f0e76a-7ae5-4860-beb4-46891c652b64/ENCFF634UHG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF599VSB bam bam unfiltered alignments GRCh38 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF437OBX/, /files/ENCFF643CGH/, /files/ENCFF297UFN/, /files/ENCFF265JXW/ 3766845624 ENCODE Processing Pipeline 18374d8ba07a21f10fc88c9ce8c09f31 https://www.encodeproject.org/files/ENCFF599VSB/@@download/ENCFF599VSB.bam released s3://encode-public/2017/02/03/cb21a28e-901e-4071-be97-f08b8258f732/ENCFF599VSB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF787BOO bam bam unfiltered alignments hg19 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF437OBX/, /files/ENCFF807MUK/, /files/ENCFF297UFN/, /files/ENCFF265JXW/ 3755856489 ENCODE Processing Pipeline 5af269fa17cc845974d31ac90eb749c7 https://www.encodeproject.org/files/ENCFF787BOO/@@download/ENCFF787BOO.bam released s3://encode-public/2017/02/03/92a8c246-4c4c-4ddc-9668-5adf30d232ea/ENCFF787BOO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF197XEY bam bam alignments hg19 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF437OBX/, /files/ENCFF807MUK/, /files/ENCFF297UFN/, /files/ENCFF265JXW/ 2454683846 ENCODE Processing Pipeline 86e38cd883d6ccb62a53eef540e1a8ac https://www.encodeproject.org/files/ENCFF197XEY/@@download/ENCFF197XEY.bam released s3://encode-public/2017/02/03/24e56c50-e1c6-4ab0-a04a-c213ddf7f07d/ENCFF197XEY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF026FWE bam bam unfiltered alignments GRCh38 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF437OBX/, /files/ENCFF297UFN/, /files/ENCFF265JXW/, /files/ENCFF110MCL/ 3815017070 ENCODE Processing Pipeline 51d84c4f17c7d70a14afa25c18e6ebf4 https://www.encodeproject.org/files/ENCFF026FWE/@@download/ENCFF026FWE.bam released s3://encode-public/2020/08/20/96ea2021-5531-4115-b00b-ca8da3978178/ENCFF026FWE.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF031GGF bam bam alignments GRCh38 ENCSR775IMI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-10-24 ENCODE 200-600 1 1_1 76 /files/ENCFF437OBX/, /files/ENCFF297UFN/, /files/ENCFF265JXW/, /files/ENCFF110MCL/ 2518228528 ENCODE Processing Pipeline 3d2245f610c73d2d0408ec4119247a96 https://www.encodeproject.org/files/ENCFF031GGF/@@download/ENCFF031GGF.bam released s3://encode-public/2020/08/20/8df27be6-4b16-494f-91c3-439e625155bb/ENCFF031GGF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF697GQO bam bam unfiltered alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF684DXF/, /files/ENCFF110MCL/ 867135604 ENCODE Processing Pipeline 3445e4990b003b4b7a896ca4a79dafab https://www.encodeproject.org/files/ENCFF697GQO/@@download/ENCFF697GQO.bam released s3://encode-public/2020/09/29/61561ae2-109d-4a7d-897e-2f5723d847e4/ENCFF697GQO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF242EMC bam bam alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF936FEO/, /files/ENCFF110MCL/ 762183597 ENCODE Processing Pipeline 0a38841c8e8bce3745cf32e3a21178af https://www.encodeproject.org/files/ENCFF242EMC/@@download/ENCFF242EMC.bam released s3://encode-public/2020/09/29/2596f10a-5d94-40ca-b7ed-a0bd3b23532b/ENCFF242EMC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF825HDQ bam bam unfiltered alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF936FEO/, /files/ENCFF110MCL/ 908376027 ENCODE Processing Pipeline ffda16b940f390ddd2dc671b551f4ffd https://www.encodeproject.org/files/ENCFF825HDQ/@@download/ENCFF825HDQ.bam released s3://encode-public/2020/09/29/7708a2b5-bd69-4c98-8ce2-425ce9906d57/ENCFF825HDQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF660GYF bam bam alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF947TCS/, /files/ENCFF110MCL/ 580177772 ENCODE Processing Pipeline 7dfd5fcf8d5724df2ca536004783c009 https://www.encodeproject.org/files/ENCFF660GYF/@@download/ENCFF660GYF.bam released s3://encode-public/2020/09/29/81d849c8-10e8-49e8-b9b4-f51c1933052d/ENCFF660GYF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF684DXF fastq fastq reads ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 645779893 Tim Reddy, Duke 79533eb9104ffa1d51b4bc95ae268763 SRA:SRR5093417 https://www.encodeproject.org/files/ENCFF684DXF/@@download/ENCFF684DXF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/30/714fac77-b88e-40cc-8d12-e157548a8974/ENCFF684DXF.fastq.gz ENCFF947TCS fastq fastq reads ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 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/human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF947TCS/ 555481787 Tim Reddy, Duke 76ee96db2d57dcd492545845d2301b38 https://www.encodeproject.org/files/ENCFF965XSL/@@download/ENCFF965XSL.bam released s3://encode-public/2016/05/31/5c31a2f8-566e-4d81-9c4d-ae3ec28e5cde/ENCFF965XSL.bam Lab custom GRCh38 archived ENCFF378NYK bam bam alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF936FEO/ 723385288 Tim Reddy, Duke 46444c051aa743b0530542dd83ed9fbc https://www.encodeproject.org/files/ENCFF378NYK/@@download/ENCFF378NYK.bam released s3://encode-public/2016/05/31/90d33ae7-64e6-4357-873c-7f8dc3a4a4b2/ENCFF378NYK.bam Lab custom GRCh38 archived ENCFF198RJG bam bam alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF684DXF/ 698757178 Tim Reddy, Duke 7584c3171efde9c48ca06eb95bfb7745 https://www.encodeproject.org/files/ENCFF198RJG/@@download/ENCFF198RJG.bam released s3://encode-public/2016/05/31/b637aaf3-fd35-4cdd-a8f9-a5e49cc38499/ENCFF198RJG.bam Lab custom GRCh38 archived ENCFF948ROL bam bam alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF684DXF/, /files/ENCFF110MCL/ 731544879 ENCODE Processing Pipeline c47f4f3dc5ea28a074287fa1615022e1 https://www.encodeproject.org/files/ENCFF948ROL/@@download/ENCFF948ROL.bam released s3://encode-public/2020/09/29/860b2752-af17-4cbb-84b2-4c89e3d75cad/ENCFF948ROL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF411DDW bam bam unfiltered alignments GRCh38 ENCSR344ERJ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 2 hour DNA formaldehyde 2016-07-21 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF947TCS/, /files/ENCFF110MCL/ 702524382 ENCODE Processing Pipeline c61da17b4fb19978931386037957ab52 https://www.encodeproject.org/files/ENCFF411DDW/@@download/ENCFF411DDW.bam released s3://encode-public/2020/09/29/fa47607b-e9e0-4b95-9e7d-584f637c47c4/ENCFF411DDW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF990RAJ fastq fastq reads ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF485UXE/ 2236572542 Michael Snyder, Stanford c62f69331809bb98466c5d40293962df SRA:SRR6212940 https://www.encodeproject.org/files/ENCFF990RAJ/@@download/ENCFF990RAJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/22/c205e501-b983-4c23-82ee-80ba157a5aca/ENCFF990RAJ.fastq.gz ENCFF485UXE fastq fastq reads ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF990RAJ/ 2257795231 Michael Snyder, Stanford c81e8fe020daabfb4a37d8acfb8e11e9 SRA:SRR6212940 https://www.encodeproject.org/files/ENCFF485UXE/@@download/ENCFF485UXE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/22/78c96caa-d63c-49b3-8a41-415392f27b37/ENCFF485UXE.fastq.gz ENCFF838OWF fastq fastq reads ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF131MCT/ 2500836760 Michael Snyder, Stanford 20339a75580554784410450932ae272c SRA:SRR6212939 https://www.encodeproject.org/files/ENCFF838OWF/@@download/ENCFF838OWF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/22/e997434b-21b2-4b86-8b8e-fde3b9824034/ENCFF838OWF.fastq.gz ENCFF131MCT fastq fastq reads ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF838OWF/ 2573831105 Michael Snyder, Stanford 367c7dc34a8e3799802da0964c7d967c SRA:SRR6212939 https://www.encodeproject.org/files/ENCFF131MCT/@@download/ENCFF131MCT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/22/c9756d9b-e5e5-4348-babf-bdc01e8ae20f/ENCFF131MCT.fastq.gz ENCFF278ROO bam bam alignments hg19 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 101 /files/ENCFF838OWF/, /files/ENCFF131MCT/, /files/ENCFF807MUK/ 3587899636 ENCODE Processing Pipeline 26728a06e3e4d7bb9068a4092d19dad9 https://www.encodeproject.org/files/ENCFF278ROO/@@download/ENCFF278ROO.bam released s3://encode-public/2017/03/23/049038cc-8765-49bf-8d10-be67a2e97e16/ENCFF278ROO.bam ENCODE3 hg19 archived ENCFF570AXK bam bam unfiltered alignments hg19 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 101 /files/ENCFF838OWF/, /files/ENCFF131MCT/, /files/ENCFF807MUK/ 5658036319 ENCODE Processing Pipeline e839f875f29d5d5a0fbc2151451eaa01 https://www.encodeproject.org/files/ENCFF570AXK/@@download/ENCFF570AXK.bam released s3://encode-public/2017/03/23/add46ad4-603d-4b0a-a8fe-48a04987eb2c/ENCFF570AXK.bam ENCODE3 hg19 archived ENCFF119IUD bam bam unfiltered alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 101 /files/ENCFF838OWF/, /files/ENCFF131MCT/, /files/ENCFF643CGH/ 5677998649 ENCODE Processing Pipeline ef3a6d4ca412cc0d64bd928a3f93d652 https://www.encodeproject.org/files/ENCFF119IUD/@@download/ENCFF119IUD.bam released s3://encode-public/2017/03/23/8ffd2ea5-58eb-4c06-9b0d-2a3c85d3d1e5/ENCFF119IUD.bam ENCODE3 GRCh38 archived ENCFF544WWZ bam bam alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 101 /files/ENCFF838OWF/, /files/ENCFF131MCT/, /files/ENCFF643CGH/ 3590288419 ENCODE Processing Pipeline db82235b1f61851db0c8992594e1c62a https://www.encodeproject.org/files/ENCFF544WWZ/@@download/ENCFF544WWZ.bam released s3://encode-public/2017/03/23/15900bad-4c44-42cd-abc8-e70dfd9d7b26/ENCFF544WWZ.bam ENCODE3 GRCh38 archived ENCFF074ZBL fastq fastq reads ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF313MNH/ 9297573937 Michael Snyder, Stanford 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/files/ENCFF990RAJ/ 22318552527 ENCODE Processing Pipeline 5f236794eff74678265a01c227cee7dd https://www.encodeproject.org/files/ENCFF656PNN/@@download/ENCFF656PNN.bam released s3://encode-public/2017/07/19/ac11ed2d-3ffd-48e4-80c4-7715596bdb6c/ENCFF656PNN.bam ENCODE3 hg19 archived ENCFF068ULX bam bam alignments hg19 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 101 /files/ENCFF074ZBL/, /files/ENCFF313MNH/, /files/ENCFF807MUK/, /files/ENCFF485UXE/, /files/ENCFF990RAJ/ 11383392963 ENCODE Processing Pipeline 7032a29e0310e5ba584d7d9d8c8b3798 https://www.encodeproject.org/files/ENCFF068ULX/@@download/ENCFF068ULX.bam released s3://encode-public/2017/07/19/2d8d9718-b734-4a1b-8709-c9fe12dab8ab/ENCFF068ULX.bam ENCODE3 hg19 archived ENCFF519DMA bam bam unfiltered alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 101 /files/ENCFF074ZBL/, /files/ENCFF313MNH/, /files/ENCFF643CGH/, /files/ENCFF485UXE/, /files/ENCFF990RAJ/ 22388425053 ENCODE Processing Pipeline a517714d0c3909c005cfe1b77ad70281 https://www.encodeproject.org/files/ENCFF519DMA/@@download/ENCFF519DMA.bam released s3://encode-public/2017/07/19/8a757d5e-b855-4c81-9bb4-c8394f3ece62/ENCFF519DMA.bam ENCODE3 GRCh38 archived ENCFF441UFO bam bam alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 101 /files/ENCFF074ZBL/, /files/ENCFF313MNH/, /files/ENCFF643CGH/, /files/ENCFF485UXE/, /files/ENCFF990RAJ/ 11388622534 ENCODE Processing Pipeline 101916ee28a7bc14035b6c1a593e7d27 https://www.encodeproject.org/files/ENCFF441UFO/@@download/ENCFF441UFO.bam released s3://encode-public/2017/07/19/da9c3f73-df82-4d1b-a56f-eaae8ed74af6/ENCFF441UFO.bam ENCODE3 GRCh38 archived ENCFF977HER bam bam unfiltered alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF313MNH/, /files/ENCFF990RAJ/, /files/ENCFF074ZBL/, /files/ENCFF485UXE/ 22607723817 ENCODE Processing Pipeline a99f28e3f8c070b51dd73efe8db08db2 https://www.encodeproject.org/files/ENCFF977HER/@@download/ENCFF977HER.bam released s3://encode-public/2020/06/03/422bf99d-e6b0-440f-9e20-ab754d2b9012/ENCFF977HER.bam ENCODE4 v1.4.0 GRCh38 released ENCFF248PKJ bam bam unfiltered alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF838OWF/, /files/ENCFF131MCT/ 5702360191 ENCODE Processing Pipeline 18961a54d35617f705b3ed40ad41cc52 https://www.encodeproject.org/files/ENCFF248PKJ/@@download/ENCFF248PKJ.bam released s3://encode-public/2020/06/03/d302c5a9-7b5a-4a7e-a8f0-f53ac5cf1d41/ENCFF248PKJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF424JUE bam bam alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF313MNH/, /files/ENCFF990RAJ/, /files/ENCFF074ZBL/, /files/ENCFF485UXE/ 12178066727 ENCODE Processing Pipeline 0a3f63f9b5ba08d3a4c816fd32576f8d https://www.encodeproject.org/files/ENCFF424JUE/@@download/ENCFF424JUE.bam released s3://encode-public/2020/06/03/9a199987-edc2-440c-a124-f7df8306ad78/ENCFF424JUE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF700ANC bam bam alignments GRCh38 ENCSR239POD Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF838OWF/, /files/ENCFF131MCT/ 3686856551 ENCODE Processing Pipeline 11beb2ca2e13f70f98c0420326b1121e https://www.encodeproject.org/files/ENCFF700ANC/@@download/ENCFF700ANC.bam released s3://encode-public/2020/06/03/1098a748-6590-47db-bd05-9d9ed1796a08/ENCFF700ANC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF453CTT fastq fastq reads ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF857OPQ/ 1855599569 Michael Snyder, Stanford e15c1cf11882dbf5bfde37880ca3efd4 SRA:SRR6213851 https://www.encodeproject.org/files/ENCFF453CTT/@@download/ENCFF453CTT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/835d8eed-14f6-4270-83a6-c117c846a183/ENCFF453CTT.fastq.gz mild to moderate bottlenecking, low read depth ENCFF857OPQ fastq fastq reads ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF453CTT/ 1887578847 Michael Snyder, Stanford ddefa77b72392170d354dd2f2d2207c4 SRA:SRR6213851 https://www.encodeproject.org/files/ENCFF857OPQ/@@download/ENCFF857OPQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/d67baafd-694d-4d66-be87-d0c0b8d605f9/ENCFF857OPQ.fastq.gz mild to moderate bottlenecking, low read depth ENCFF886NRA bam bam unfiltered alignments GRCh38 ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF857OPQ/, /files/ENCFF643CGH/, /files/ENCFF453CTT/ 4114962491 ENCODE Processing Pipeline 94cf3b90d5d5e4c89fde40b9349569e8 https://www.encodeproject.org/files/ENCFF886NRA/@@download/ENCFF886NRA.bam released s3://encode-public/2016/05/06/83de13e8-5c71-4608-8875-e41e0a7d1650/ENCFF886NRA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF709NCT bam bam alignments GRCh38 ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF857OPQ/, /files/ENCFF643CGH/, /files/ENCFF453CTT/ 3134959736 ENCODE Processing Pipeline c5d3e5678a9d1bbbd7c9c481710090d3 https://www.encodeproject.org/files/ENCFF709NCT/@@download/ENCFF709NCT.bam released s3://encode-public/2016/05/06/070c666d-6425-4851-9eaa-d0fd518b65b6/ENCFF709NCT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF350KGC bam bam unfiltered alignments hg19 ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF857OPQ/, /files/ENCFF807MUK/, /files/ENCFF453CTT/ 4109988027 ENCODE Processing Pipeline 9a5d5f59e44d286f72dc6c50bdc6fb29 https://www.encodeproject.org/files/ENCFF350KGC/@@download/ENCFF350KGC.bam released s3://encode-public/2016/12/06/e080c623-ce9a-4a14-ae0b-770805465a7d/ENCFF350KGC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF880RWA bam bam alignments hg19 ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF857OPQ/, /files/ENCFF807MUK/, /files/ENCFF453CTT/ 3130559303 ENCODE Processing Pipeline 5091c92eb953ae84a50ea69a5e1a22e6 https://www.encodeproject.org/files/ENCFF880RWA/@@download/ENCFF880RWA.bam released s3://encode-public/2016/12/06/ce50528a-b6bc-4295-98c7-58f187e8b904/ENCFF880RWA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF037AHQ bam bam unfiltered alignments GRCh38 ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF857OPQ/, /files/ENCFF453CTT/ 4099524094 ENCODE Processing Pipeline 12613dbca8f60643d89040aa7ec7c27e https://www.encodeproject.org/files/ENCFF037AHQ/@@download/ENCFF037AHQ.bam released s3://encode-public/2020/06/02/ae363e90-07e8-4138-925f-54ecbb4db104/ENCFF037AHQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF774CGO bam bam alignments GRCh38 ENCSR488BXS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF857OPQ/, /files/ENCFF453CTT/ 3096548503 ENCODE Processing Pipeline 25ea3ef86bd5cd2ae1343a87c8630906 https://www.encodeproject.org/files/ENCFF774CGO/@@download/ENCFF774CGO.bam released s3://encode-public/2020/06/02/c80f7f71-3d62-4112-bcfb-7421f556bf5c/ENCFF774CGO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF774LDI fastq fastq reads ENCSR010TRT Control ChIP-seq /worm-donors/ENCDO797VVG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183847/'], '@type': ['Target', 'Item'], 'name': 'che-1-celegans', 'label': 'che-1', '@id': '/targets/che-1-celegans/', 'title': 'che-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e36b89fe-fc03-4a14-be7e-2b2b686d59ce', 'status': 'released'} ce11 I 6508016 6540361 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1273561937 Kevin White, UChicago cca15b03eb3dd9a2a4e196947f712934 https://www.encodeproject.org/files/ENCFF774LDI/@@download/ENCFF774LDI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/deefd340-ad17-4a91-b6a1-19149014cca7/ENCFF774LDI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF626YER bam bam alignments ce10 ENCSR010TRT Control ChIP-seq /worm-donors/ENCDO797VVG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183847/'], '@type': ['Target', 'Item'], 'name': 'che-1-celegans', 'label': 'che-1', '@id': '/targets/che-1-celegans/', 'title': 'che-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e36b89fe-fc03-4a14-be7e-2b2b686d59ce', 'status': 'released'} ce11 I 6508016 6540361 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF774LDI/, /files/ENCFF987UMF/ 1670589753 Kevin White, UChicago f4d0cf367bcafa9c6f724205e45fc5a7 https://www.encodeproject.org/files/ENCFF626YER/@@download/ENCFF626YER.bam released s3://encode-public/2016/10/07/e9969385-1044-49fc-bcb6-bdf71716c217/ENCFF626YER.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF135YXF bam bam alignments ce11 ENCSR010TRT Control ChIP-seq /worm-donors/ENCDO797VVG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183847/'], '@type': ['Target', 'Item'], 'name': 'che-1-celegans', 'label': 'che-1', '@id': '/targets/che-1-celegans/', 'title': 'che-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e36b89fe-fc03-4a14-be7e-2b2b686d59ce', 'status': 'released'} ce11 I 6508016 6540361 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF774LDI/, /files/ENCFF586MOL/ 1671906802 Kevin White, UChicago f5207ad1c3b42d31f9a1aa94e3206ae9 https://www.encodeproject.org/files/ENCFF135YXF/@@download/ENCFF135YXF.bam released s3://encode-public/2016/10/07/f3839905-eed8-4593-9dda-e5d558f6b57e/ENCFF135YXF.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF890VVY bigWig bigWig signal of unique reads ce10 ENCSR010TRT Control ChIP-seq /worm-donors/ENCDO797VVG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183847/'], '@type': ['Target', 'Item'], 'name': 'che-1-celegans', 'label': 'che-1', '@id': '/targets/che-1-celegans/', 'title': 'che-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e36b89fe-fc03-4a14-be7e-2b2b686d59ce', 'status': 'released'} ce11 I 6508016 6540361 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF626YER/ 9944084 Kevin White, UChicago fe3c7f26295c2b48a317e00e28fc69d1 https://www.encodeproject.org/files/ENCFF890VVY/@@download/ENCFF890VVY.bigWig released s3://encode-public/2016/10/07/2acae91a-0059-4469-b2a0-c2c5916a97bc/ENCFF890VVY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF159SDM bigWig bigWig read-depth normalized signal ce10 ENCSR010TRT Control ChIP-seq /worm-donors/ENCDO797VVG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183847/'], '@type': ['Target', 'Item'], 'name': 'che-1-celegans', 'label': 'che-1', '@id': '/targets/che-1-celegans/', 'title': 'che-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e36b89fe-fc03-4a14-be7e-2b2b686d59ce', 'status': 'released'} ce11 I 6508016 6540361 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF626YER/ 9918351 Kevin White, UChicago 591ce3adf6bb723b6e2ac27182f269ce https://www.encodeproject.org/files/ENCFF159SDM/@@download/ENCFF159SDM.bigWig released s3://encode-public/2016/10/07/678ebfa6-59a8-412a-98ca-82da93f622c0/ENCFF159SDM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF254JCQ bigWig bigWig read-depth normalized signal ce11 ENCSR010TRT Control ChIP-seq /worm-donors/ENCDO797VVG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183847/'], '@type': ['Target', 'Item'], 'name': 'che-1-celegans', 'label': 'che-1', '@id': '/targets/che-1-celegans/', 'title': 'che-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e36b89fe-fc03-4a14-be7e-2b2b686d59ce', 'status': 'released'} ce11 I 6508016 6540361 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF135YXF/ 9918345 Kevin White, UChicago 764fafd247a24d2daa87690272d4e15a https://www.encodeproject.org/files/ENCFF254JCQ/@@download/ENCFF254JCQ.bigWig released s3://encode-public/2016/10/07/7c1c53d8-5498-46c1-ba66-ea18fe04cea8/ENCFF254JCQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF287DLP bigWig bigWig signal of unique reads ce11 ENCSR010TRT Control ChIP-seq /worm-donors/ENCDO797VVG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/183847/'], '@type': ['Target', 'Item'], 'name': 'che-1-celegans', 'label': 'che-1', '@id': '/targets/che-1-celegans/', 'title': 'che-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e36b89fe-fc03-4a14-be7e-2b2b686d59ce', 'status': 'released'} ce11 I 6508016 6540361 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF135YXF/ 9944080 Kevin White, UChicago 506847811b158b8075ceab36d3a5e3f1 https://www.encodeproject.org/files/ENCFF287DLP/@@download/ENCFF287DLP.bigWig released s3://encode-public/2016/10/07/8923f30e-1833-4bc1-8244-d8e5063b5ae3/ENCFF287DLP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF062ZWZ bam bam unfiltered alignments hg19 ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF203GDE/, /files/ENCFF671HJP/ 6029092149 ENCODE Processing Pipeline d0c29f38398a3e41765f5402c61ab9f2 https://www.encodeproject.org/files/ENCFF062ZWZ/@@download/ENCFF062ZWZ.bam released s3://encode-public/2018/02/21/394701c6-0848-4337-a546-a7d54e12f8a6/ENCFF062ZWZ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF203GDE fastq fastq reads ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF671HJP/ 2701123436 Michael Snyder, Stanford 620d789a96cb9b226ae4d7bc6d9d7d56 SRA:SRR8660314 https://www.encodeproject.org/files/ENCFF203GDE/@@download/ENCFF203GDE.fastq.gz Illumina HiSeq 2000 /files/ENCFF598DYO/, /files/ENCFF821AJH/ released s3://encode-public/2016/04/07/7ded2b0b-dc29-4432-b609-d296d9313749/ENCFF203GDE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF671HJP fastq fastq reads ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF203GDE/ 2760092436 Michael Snyder, Stanford d985acaaf7ef494ea3a755d8c6b06a85 SRA:SRR8660314 https://www.encodeproject.org/files/ENCFF671HJP/@@download/ENCFF671HJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF598DYO/, /files/ENCFF821AJH/ released s3://encode-public/2016/04/07/6c1f735f-e16e-4504-b18f-a11a63e8d981/ENCFF671HJP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF316EBF bam bam alignments hg19 ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF203GDE/, /files/ENCFF671HJP/ 4689837274 ENCODE Processing Pipeline e379791cb3ab2bb95d9e5af33aa28301 https://www.encodeproject.org/files/ENCFF316EBF/@@download/ENCFF316EBF.bam released s3://encode-public/2016/05/21/2435bd55-49bc-4745-a855-56d38297c8c1/ENCFF316EBF.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF500BKR bam bam unfiltered alignments GRCh38 ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF203GDE/, /files/ENCFF671HJP/, /files/ENCFF643CGH/ 6044293769 ENCODE Processing Pipeline 5859a54a92bd49df7f5095d6120ebaf1 https://www.encodeproject.org/files/ENCFF500BKR/@@download/ENCFF500BKR.bam released s3://encode-public/2016/10/29/4c0ccad0-d986-4004-a465-e35ede3a14c1/ENCFF500BKR.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF350IRK bam bam alignments GRCh38 ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF203GDE/, /files/ENCFF671HJP/, /files/ENCFF643CGH/ 4687695970 ENCODE Processing Pipeline 2887bc742c83bffa032448f1d8629534 https://www.encodeproject.org/files/ENCFF350IRK/@@download/ENCFF350IRK.bam released s3://encode-public/2016/10/29/287ea8bc-598e-4b42-82d1-ec6c59362a20/ENCFF350IRK.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF220OIK bam bam unfiltered alignments GRCh38 ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF203GDE/, /files/ENCFF671HJP/ 6043762074 ENCODE Processing Pipeline 1e6fa94e20222d3a33193988ca2a6c97 https://www.encodeproject.org/files/ENCFF220OIK/@@download/ENCFF220OIK.bam released s3://encode-public/2020/06/02/e5d4b5ab-49c5-42eb-aff4-2fa388b8c21d/ENCFF220OIK.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF897DZG bam bam alignments GRCh38 ENCSR910NJG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-72'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4779/'], '@type': ['Target', 'Item'], 'name': 'NFE2L1-human', 'label': 'NFE2L1', '@id': '/targets/NFE2L1-human/', 'title': 'NFE2L1 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'd3161c98-6576-4b70-859b-f3a188afe92b', 'status': 'released'} hg19 17 45995801 46223194 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF203GDE/, /files/ENCFF671HJP/ 4773752824 ENCODE Processing Pipeline d3dd3328a2e87f29e55ceca65b3379a5 https://www.encodeproject.org/files/ENCFF897DZG/@@download/ENCFF897DZG.bam released s3://encode-public/2020/06/02/1609d62a-2666-4cd1-afbe-0e88018453e7/ENCFF897DZG.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF159MTI fastq fastq reads ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1063840928 Zhiping Weng, UMass 233444cd9d3bdfb5184e3cddcfb88017 SRA:SRR1045836 https://www.encodeproject.org/files/ENCFF159MTI/@@download/ENCFF159MTI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/bcfe05a4-fb62-409d-b9fd-868e6b0c094d/ENCFF159MTI.fastq.gz low read length, mixed read lengths ENCFF781GHE fastq fastq reads ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 1976953481 Zhiping Weng, UMass 39d3c856a362f1e3f8f56789c989b8f4 SRA:SRR578712 https://www.encodeproject.org/files/ENCFF781GHE/@@download/ENCFF781GHE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/0ebc4b0a-732c-488c-8656-46c0e1d04569/ENCFF781GHE.fastq.gz low read length, mixed read lengths ENCFF590PSB bam bam unfiltered alignments GRCh38 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF781GHE/, /files/ENCFF159MTI/ 3120787480 ENCODE Processing Pipeline 53d51165d185556b6e30ac5d308f5833 https://www.encodeproject.org/files/ENCFF590PSB/@@download/ENCFF590PSB.bam released s3://encode-public/2020/10/08/41cf54fa-5039-4d07-923d-9558073678cd/ENCFF590PSB.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF457NFR bam bam alignments GRCh38 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF781GHE/, /files/ENCFF159MTI/ 2205756933 ENCODE Processing Pipeline e848aca214e12a65bc4216a1edc66f9a https://www.encodeproject.org/files/ENCFF457NFR/@@download/ENCFF457NFR.bam released s3://encode-public/2020/10/08/d199bfb9-a8f9-4b5a-bd7a-94ca0e4d9b3f/ENCFF457NFR.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF515OCE bam bam unfiltered alignments hg19 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF807MUK/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 3620885440 ENCODE Processing Pipeline 50ec1cbdd90291ee5742c5aac1a7af1c https://www.encodeproject.org/files/ENCFF515OCE/@@download/ENCFF515OCE.bam released s3://encode-public/2016/12/19/d25ffd57-d146-48be-b512-4d7fdf4e1dba/ENCFF515OCE.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF942IYS bam bam unfiltered alignments GRCh38 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF643CGH/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 3635158759 ENCODE Processing Pipeline 60213a87faecec8d3713925e8e6b1a51 https://www.encodeproject.org/files/ENCFF942IYS/@@download/ENCFF942IYS.bam released s3://encode-public/2016/12/19/56c67545-069b-44bb-bb25-34e54fb9afec/ENCFF942IYS.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF909MPD bam bam alignments hg19 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF807MUK/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 2390803541 ENCODE Processing Pipeline 4ece3cb39ac97a05f54c25288cf3eb50 https://www.encodeproject.org/files/ENCFF909MPD/@@download/ENCFF909MPD.bam released s3://encode-public/2016/12/19/7001a251-ad8b-42d0-84b1-2009a031f2d3/ENCFF909MPD.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF381OZQ bam bam alignments GRCh38 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF643CGH/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 2390609367 ENCODE Processing Pipeline 51518d27e652c0f5a0a8536f0e058b13 https://www.encodeproject.org/files/ENCFF381OZQ/@@download/ENCFF381OZQ.bam released s3://encode-public/2016/12/19/5b250469-c1e7-4f93-8e62-882c976500b9/ENCFF381OZQ.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF209YSO bam bam unfiltered alignments GRCh38 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 3222201345 ENCODE Processing Pipeline d5771d7ca4a0caddb233c55aca3da06f https://www.encodeproject.org/files/ENCFF209YSO/@@download/ENCFF209YSO.bam released s3://encode-public/2017/05/23/6ed15a23-6e9c-489f-9e66-7756816922e3/ENCFF209YSO.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF278NFU bam bam alignments GRCh38 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF643CGH/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 1978492949 ENCODE Processing Pipeline c36d4986052ae10c40768699c4fa49c2 https://www.encodeproject.org/files/ENCFF278NFU/@@download/ENCFF278NFU.bam released s3://encode-public/2017/05/23/585a9988-49b8-4a9b-af39-42bd49bbc46e/ENCFF278NFU.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF290LGH bam bam unfiltered alignments hg19 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 3207382526 ENCODE Processing Pipeline 348843999b341c8f451b09daa28546ac https://www.encodeproject.org/files/ENCFF290LGH/@@download/ENCFF290LGH.bam released s3://encode-public/2017/05/23/7bf4cb44-e2ef-4c52-a19e-8d66e6d4efb7/ENCFF290LGH.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF722QST bam bam alignments hg19 ENCSR116QUS Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000947 aorta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 36 /files/ENCFF807MUK/, /files/ENCFF159MTI/, /files/ENCFF781GHE/ 1978963259 ENCODE Processing Pipeline eda745cbc5c8fc6a5345594e28dbbfec https://www.encodeproject.org/files/ENCFF722QST/@@download/ENCFF722QST.bam released s3://encode-public/2017/05/23/74283775-633b-46ec-9aa3-aa026cafd3ab/ENCFF722QST.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF022OEJ bam bam unfiltered alignments hg19 ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF322SHV/, /files/ENCFF617CIJ/ 2328698006 ENCODE Processing Pipeline 1a6b5a483e65b480bd8481bbab97afb6 https://www.encodeproject.org/files/ENCFF022OEJ/@@download/ENCFF022OEJ.bam released s3://encode-public/2018/02/21/21ab0507-2326-48c7-9fd1-617d4be9edd4/ENCFF022OEJ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF617CIJ fastq fastq reads ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 830803805 Kevin White, UChicago 021b1bb81409b1f8556edfa956029c70 SRA:SRR6213109 https://www.encodeproject.org/files/ENCFF617CIJ/@@download/ENCFF617CIJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF322SHV/ released s3://encode-public/2016/03/14/9e3dfce3-1fed-4214-abc9-5f2afbd5f56c/ENCFF617CIJ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF322SHV fastq fastq reads ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1410769555 Kevin White, UChicago f555d7e4b78859bc02e5bb6fc45560de SRA:SRR6213110 https://www.encodeproject.org/files/ENCFF322SHV/@@download/ENCFF322SHV.fastq.gz Illumina HiSeq 2500 /files/ENCFF617CIJ/ released s3://encode-public/2016/03/26/4aed9c93-9cc4-41dd-9c27-6d8b79de33cf/ENCFF322SHV.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF629YBN bam bam alignments hg19 ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF322SHV/, /files/ENCFF617CIJ/ 1756606869 ENCODE Processing Pipeline 3647aa7d2836c668796227d8ba3c2dec https://www.encodeproject.org/files/ENCFF629YBN/@@download/ENCFF629YBN.bam released s3://encode-public/2016/04/23/262887b7-28d4-49a5-81c8-bb81c146f66d/ENCFF629YBN.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF218JCZ bam bam unfiltered alignments GRCh38 ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF322SHV/, /files/ENCFF617CIJ/ 2336293284 ENCODE Processing Pipeline f675c5908d5c5e1b0ec97d8899491415 https://www.encodeproject.org/files/ENCFF218JCZ/@@download/ENCFF218JCZ.bam released s3://encode-public/2016/05/06/8a72c0d0-ffee-4f6e-b77d-6beaa99f2acd/ENCFF218JCZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF159FKZ bam bam alignments GRCh38 ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF322SHV/, /files/ENCFF617CIJ/ 1755820334 ENCODE Processing Pipeline a499697804bda261a279acb09c25688c https://www.encodeproject.org/files/ENCFF159FKZ/@@download/ENCFF159FKZ.bam released s3://encode-public/2016/05/06/a7f3bd52-810a-47ca-acfc-f866223a21c5/ENCFF159FKZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF720UWG bam bam alignments GRCh38 ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF322SHV/, /files/ENCFF617CIJ/, /files/ENCFF110MCL/ 1857009007 ENCODE Processing Pipeline fd39c96108351bbe9596cea731bc9c37 https://www.encodeproject.org/files/ENCFF720UWG/@@download/ENCFF720UWG.bam released s3://encode-public/2020/10/27/05bc6632-47cd-4eec-8978-c54389f8be1c/ENCFF720UWG.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF489LXP bam bam unfiltered alignments GRCh38 ENCSR311ULL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} hg19 21 26958607 27169245 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF322SHV/, /files/ENCFF617CIJ/, /files/ENCFF110MCL/ 2338519625 ENCODE Processing Pipeline 7b5c63aa5d9f9a1520f95ec28ae89a9b https://www.encodeproject.org/files/ENCFF489LXP/@@download/ENCFF489LXP.bam released s3://encode-public/2020/10/27/c079a61a-948c-4b5c-adae-774ea9c26290/ENCFF489LXP.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF238ASN fastq fastq reads ENCSR081HNW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA modENCODE >200 1 1_1 44 single-ended 991165400 Kevin White, UChicago 19a3cb89dfe173e66ddd14949ea56c68 https://www.encodeproject.org/files/ENCFF238ASN/@@download/ENCFF238ASN.fastq.gz Illumina HiSeq 2000 /files/ENCFF638SON/ archived s3://encode-public/2016/08/22/0d0c2d56-0034-4e05-8489-22e46756f4c1/ENCFF238ASN.fastq.gz lacking processed data ENCFF564ZEX fastq fastq reads ENCSR272JEI Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 654325807 Kevin White, UChicago d44279d0c96f3381d5a46aa1e82a6411 https://www.encodeproject.org/files/ENCFF564ZEX/@@download/ENCFF564ZEX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/01/13/fd93dc49-24a1-4d24-9b77-cd8dd2494c51/ENCFF564ZEX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF796DUS bam bam alignments dm3 ENCSR272JEI Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF564ZEX/, /files/ENCFF059UHX/ 804904035 Kevin White, UChicago 45920d459469a85e396ef1743342b874 https://www.encodeproject.org/files/ENCFF796DUS/@@download/ENCFF796DUS.bam released s3://encode-public/2017/01/03/bc39479b-c834-4278-8c2e-1727b36157ed/ENCFF796DUS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF785EZC bam bam alignments dm6 ENCSR272JEI Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF564ZEX/ 801644610 Kevin White, UChicago 54d4786df2d7ecbf1a6ee16fe2a5dab3 https://www.encodeproject.org/files/ENCFF785EZC/@@download/ENCFF785EZC.bam released s3://encode-public/2017/01/03/7e870dff-3298-4c9b-ab99-26f9a0711798/ENCFF785EZC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF287XHC bigWig bigWig signal of unique reads dm3 ENCSR272JEI Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF796DUS/ 15322303 Kevin White, UChicago 8a1394df247a6dc75cde4484edd31bf7 https://www.encodeproject.org/files/ENCFF287XHC/@@download/ENCFF287XHC.bigWig released s3://encode-public/2017/09/21/659eb234-3a35-4440-85d4-db9ce4809758/ENCFF287XHC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF511GRN bigWig bigWig read-depth normalized signal dm3 ENCSR272JEI Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF796DUS/ 15369066 Kevin White, UChicago 877af61b0c74bffa918285610d3650cb https://www.encodeproject.org/files/ENCFF511GRN/@@download/ENCFF511GRN.bigWig released s3://encode-public/2017/09/21/f34a69cc-3321-41e9-ab6f-c58fe3356c2f/ENCFF511GRN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF494TBS bigWig bigWig signal of unique reads dm6 ENCSR272JEI Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF785EZC/ 17494945 Kevin White, UChicago 85a422080661c0f017c93453c971b596 https://www.encodeproject.org/files/ENCFF494TBS/@@download/ENCFF494TBS.bigWig released s3://encode-public/2017/09/21/6ee4f128-de48-4c68-8d55-7138f90eb963/ENCFF494TBS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF883BHZ bigWig bigWig read-depth normalized signal dm6 ENCSR272JEI Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF785EZC/ 17552637 Kevin White, UChicago a0e24dae99d7a2c13e80548369fea2fc https://www.encodeproject.org/files/ENCFF883BHZ/@@download/ENCFF883BHZ.bigWig released s3://encode-public/2017/09/21/84068a5d-0fca-4593-bb79-78d5124f76ae/ENCFF883BHZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF479UXM bam bam unfiltered alignments GRCh38 ENCSR773UBR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF708ACP/, /files/ENCFF373SHC/, /files/ENCFF110MCL/, /files/ENCFF791CYY/, /files/ENCFF307NYE/ 4437881169 ENCODE Processing Pipeline 0e3dc8d36378146c1a88ec94fb27219e https://www.encodeproject.org/files/ENCFF479UXM/@@download/ENCFF479UXM.bam released s3://encode-public/2020/09/19/9e746dee-6b14-49e5-8fe6-97f1d0d21219/ENCFF479UXM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF708ACP fastq fastq reads ENCSR773UBR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 827921092 Bradley Bernstein, Broad 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https://www.encodeproject.org/files/ENCFF307NYE/@@download/ENCFF307NYE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/9489ae2c-a681-4a08-ad5c-bf540750041f/ENCFF307NYE.fastq.gz ENCFF373SHC fastq fastq reads ENCSR773UBR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_2 76 single-ended 1450320145 Bradley Bernstein, Broad 64fd51c9b0bb0b3fe24a20415e4ae94e SRA:SRR10838399 https://www.encodeproject.org/files/ENCFF373SHC/@@download/ENCFF373SHC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/2080f055-9d4d-4ef9-9d6a-8376a14dc292/ENCFF373SHC.fastq.gz ENCFF335PIY bam bam alignments GRCh38 ENCSR773UBR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF791CYY/, /files/ENCFF708ACP/, /files/ENCFF373SHC/, /files/ENCFF643CGH/, /files/ENCFF307NYE/ 3672660050 ENCODE Processing Pipeline 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/files/ENCFF791CYY/, /files/ENCFF708ACP/, /files/ENCFF807MUK/, /files/ENCFF373SHC/, /files/ENCFF307NYE/ 4424232929 ENCODE Processing Pipeline e9c60486736a15c2a9c8ad0eb6041a1a https://www.encodeproject.org/files/ENCFF392SIP/@@download/ENCFF392SIP.bam released s3://encode-public/2019/06/12/c7eee80b-eaf6-463b-a3ff-626b436e3dfc/ENCFF392SIP.bam ENCODE3 hg19 archived ENCFF793TQU bam bam alignments hg19 ENCSR773UBR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF791CYY/, /files/ENCFF708ACP/, /files/ENCFF807MUK/, /files/ENCFF373SHC/, /files/ENCFF307NYE/ 3668119547 ENCODE Processing Pipeline 6b82075c0350e39de7772d4cd2927236 https://www.encodeproject.org/files/ENCFF793TQU/@@download/ENCFF793TQU.bam released s3://encode-public/2019/06/12/46e1d790-9211-41d8-b81e-3c8c328c298b/ENCFF793TQU.bam ENCODE3 hg19 archived ENCFF987LTC bam bam alignments GRCh38 ENCSR773UBR Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF708ACP/, /files/ENCFF373SHC/, /files/ENCFF110MCL/, /files/ENCFF791CYY/, /files/ENCFF307NYE/ 3697631075 ENCODE Processing Pipeline f8f2c2131da684368f66720d4734b15c https://www.encodeproject.org/files/ENCFF987LTC/@@download/ENCFF987LTC.bam released s3://encode-public/2020/09/19/7f88364e-a702-45c0-a4c7-0e7e1669ee1a/ENCFF987LTC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF909SHL fastq fastq reads ENCSR053FDL Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA modENCODE >200 1 1_1 44 single-ended 950164577 Kevin White, UChicago 8b683308c7170c5fa4d445361876b525 https://www.encodeproject.org/files/ENCFF909SHL/@@download/ENCFF909SHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF205PZM/ archived s3://encode-public/2016/08/22/2a64b808-fdc5-4059-8165-6c729f891d5a/ENCFF909SHL.fastq.gz lacking processed data 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/mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 51 /files/ENCFF806TVZ/, /files/ENCFF129BRG/, /files/ENCFF088MXW/, /files/ENCFF195VIV/ 2026803988 ENCODE Processing Pipeline 153d24ac8632a495532002f8fcad3127 https://www.encodeproject.org/files/ENCFF071EKX/@@download/ENCFF071EKX.bam archived s3://encode-public/2016/03/29/4e6c8aab-563d-401b-9748-1782ef552860/ENCFF071EKX.bam ENCFF279XLE bam bam unfiltered alignments mm10 ENCSR659EZI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 51 /files/ENCFF018NEO/, /files/ENCFF129BRG/, /files/ENCFF088MXW/, /files/ENCFF195VIV/ 2825932066 ENCODE Processing Pipeline c31888ba82fccd0f7ac52af30a7edd4d https://www.encodeproject.org/files/ENCFF279XLE/@@download/ENCFF279XLE.bam released s3://encode-public/2016/05/20/16cc8357-ace2-434b-8481-37cbfbaddbc9/ENCFF279XLE.bam ENCODE3 mm10 archived ENCFF462RFR bam bam unfiltered alignments mm10 ENCSR659EZI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF562YFW/, /files/ENCFF018NEO/, /files/ENCFF807YNF/ 2784529180 ENCODE Processing Pipeline d7430fdb9edd871b13d46c41aec47532 https://www.encodeproject.org/files/ENCFF462RFR/@@download/ENCFF462RFR.bam released s3://encode-public/2016/05/20/50a84536-93c3-4026-9261-5f8a510c2dc0/ENCFF462RFR.bam ENCODE3 mm10 archived ENCFF270SEO bam bam alignments mm10 ENCSR659EZI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 51 /files/ENCFF018NEO/, /files/ENCFF129BRG/, /files/ENCFF088MXW/, /files/ENCFF195VIV/ 2026281347 ENCODE Processing Pipeline 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/files/ENCFF562YFW/, /files/ENCFF309GLL/ 2651448849 ENCODE Processing Pipeline 26cb66eb605e0e6abae3f5c6161bb27c https://www.encodeproject.org/files/ENCFF440NMM/@@download/ENCFF440NMM.bam released s3://encode-public/2020/10/08/3c8ebcf6-2074-400e-ae47-940a8e1c3928/ENCFF440NMM.bam ENCODE4 v1.5.1 mm10 released ENCFF036KSD bam bam unfiltered alignments mm10 ENCSR659EZI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF129BRG/, /files/ENCFF195VIV/, /files/ENCFF088MXW/, /files/ENCFF309GLL/ 2690997270 ENCODE Processing Pipeline c798e9a9ff5de1eff8f7cb81805fe5ef https://www.encodeproject.org/files/ENCFF036KSD/@@download/ENCFF036KSD.bam released s3://encode-public/2020/10/08/fca909c6-a615-48ff-959b-7ddd39bc1bfa/ENCFF036KSD.bam ENCODE4 v1.5.1 mm10 released ENCFF345XLY bam bam alignments mm10 ENCSR659EZI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF807YNF/, /files/ENCFF562YFW/, /files/ENCFF309GLL/ 2028696269 ENCODE Processing Pipeline c3851fac4adebe0952392dbc77ee5694 https://www.encodeproject.org/files/ENCFF345XLY/@@download/ENCFF345XLY.bam released s3://encode-public/2020/10/08/58ca8176-d6ea-4e07-bb55-86410401a3be/ENCFF345XLY.bam ENCODE4 v1.5.1 mm10 released ENCFF473YMF bam bam alignments mm10 ENCSR659EZI Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF129BRG/, /files/ENCFF195VIV/, /files/ENCFF088MXW/, /files/ENCFF309GLL/ 2050631419 ENCODE Processing Pipeline 9e6546cfbfa1b270c8c6ef503b8ef970 https://www.encodeproject.org/files/ENCFF473YMF/@@download/ENCFF473YMF.bam released s3://encode-public/2020/10/08/091959ad-5980-44bf-8e6d-79a60ebb008e/ENCFF473YMF.bam ENCODE4 v1.5.1 mm10 released ENCFF007ATE fastq fastq reads ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF629EIQ/ 2745165103 Richard Myers, HAIB 578a43511590e922a93480a0cf5b19f6 SRA:SRR8660366 https://www.encodeproject.org/files/ENCFF007ATE/@@download/ENCFF007ATE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/d0f9c7e9-5f73-4393-b9ae-e8b667aa683e/ENCFF007ATE.fastq.gz ENCFF629EIQ fastq fastq reads ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF007ATE/ 2878975026 Richard Myers, HAIB 8c51ddb441a26e12027b2e25a2ab7045 SRA:SRR8660366 https://www.encodeproject.org/files/ENCFF629EIQ/@@download/ENCFF629EIQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/ecb589c9-90f6-4109-8596-bdea6e451954/ENCFF629EIQ.fastq.gz ENCFF437XIH bam bam alignments hg19 ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007ATE/, /files/ENCFF807MUK/, /files/ENCFF629EIQ/ 4618474195 ENCODE Processing Pipeline 6a7fce983cf983330a59ad9eb7fbb5db https://www.encodeproject.org/files/ENCFF437XIH/@@download/ENCFF437XIH.bam released s3://encode-public/2017/02/02/e201d63a-1ae9-4ba4-91ff-e40c3fb66f40/ENCFF437XIH.bam ENCODE3 hg19 archived ENCFF897KYW bam bam unfiltered alignments hg19 ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007ATE/, /files/ENCFF807MUK/, /files/ENCFF629EIQ/ 6672520926 ENCODE Processing Pipeline 66623c525bd13829907304acff3b6a3b https://www.encodeproject.org/files/ENCFF897KYW/@@download/ENCFF897KYW.bam released s3://encode-public/2017/02/02/e10d6b36-bf03-42ee-86e7-f9ef80ed2101/ENCFF897KYW.bam ENCODE3 hg19 archived ENCFF943XRD bam bam alignments GRCh38 ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007ATE/, /files/ENCFF643CGH/, /files/ENCFF629EIQ/ 4626873523 ENCODE Processing Pipeline 17a29973357ca59646797d692a2010d4 https://www.encodeproject.org/files/ENCFF943XRD/@@download/ENCFF943XRD.bam released s3://encode-public/2017/02/02/7bade590-41ef-4ede-824a-38cbb5175d10/ENCFF943XRD.bam ENCODE3 GRCh38 archived ENCFF669RNN bam bam unfiltered alignments GRCh38 ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007ATE/, /files/ENCFF643CGH/, /files/ENCFF629EIQ/ 6702387086 ENCODE Processing Pipeline 2415384be26baca3229caec4f886ad22 https://www.encodeproject.org/files/ENCFF669RNN/@@download/ENCFF669RNN.bam released s3://encode-public/2017/02/02/72fb86b5-a238-490b-8608-0be965860ec3/ENCFF669RNN.bam ENCODE3 GRCh38 archived ENCFF293QJQ bam bam unfiltered alignments GRCh38 ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF007ATE/, /files/ENCFF629EIQ/ 6716917572 ENCODE Processing Pipeline 6d2926633d82bee57c723467af9a0e00 https://www.encodeproject.org/files/ENCFF293QJQ/@@download/ENCFF293QJQ.bam released s3://encode-public/2020/06/06/d8634512-3a78-4163-854f-1f0ab810c0f0/ENCFF293QJQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF531ZAS bam bam alignments GRCh38 ENCSR951JUP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF007ATE/, /files/ENCFF629EIQ/ 4393438563 ENCODE Processing Pipeline 89a2279574fa9247c4a7732f078ec2e2 https://www.encodeproject.org/files/ENCFF531ZAS/@@download/ENCFF531ZAS.bam released s3://encode-public/2020/06/06/6e141065-71ce-4e7a-9c7a-873247476243/ENCFF531ZAS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF631KZD fastq fastq reads ENCSR978LBS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF404TLY/ 2254959959 Michael Snyder, Stanford cf147916e8bdfac56636c20be1954e7c SRA:SRR6214225 https://www.encodeproject.org/files/ENCFF631KZD/@@download/ENCFF631KZD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/24/a2d135e9-609f-40c4-9d9d-97e3765ce429/ENCFF631KZD.fastq.gz ENCFF404TLY fastq fastq reads ENCSR978LBS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004264 lower leg skin tissue Homo 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lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF631KZD/, /files/ENCFF404TLY/ 4383446234 ENCODE Processing Pipeline 71f096f9885faf343ee9afdac29fcd8d https://www.encodeproject.org/files/ENCFF600WTX/@@download/ENCFF600WTX.bam released s3://encode-public/2016/10/27/b866a36d-2825-418a-861d-a94cb24e11a8/ENCFF600WTX.bam ENCODE3 GRCh38 archived ENCFF553WEE bam bam alignments hg19 ENCSR978LBS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF631KZD/, /files/ENCFF404TLY/ 3330079723 ENCODE Processing Pipeline d172efcc47269cdcbbdea4831df5cc6e https://www.encodeproject.org/files/ENCFF553WEE/@@download/ENCFF553WEE.bam released s3://encode-public/2016/10/27/1e20ea27-b1b9-4ad6-840b-2f6964c15b87/ENCFF553WEE.bam ENCODE3 hg19 archived ENCFF037IQW bam bam alignments GRCh38 ENCSR978LBS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF631KZD/, /files/ENCFF404TLY/ 3335785621 ENCODE Processing Pipeline 00dda8dfe3873d0d08a539361459fa3f https://www.encodeproject.org/files/ENCFF037IQW/@@download/ENCFF037IQW.bam released s3://encode-public/2016/10/27/eb26824a-2df6-482f-99af-d057f128f828/ENCFF037IQW.bam ENCODE3 GRCh38 archived ENCFF466TZM bam bam unfiltered alignments GRCh38 ENCSR978LBS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF404TLY/, /files/ENCFF631KZD/ 4459445044 ENCODE Processing Pipeline 4d34f5c191362b7c2180a0d036076d44 https://www.encodeproject.org/files/ENCFF466TZM/@@download/ENCFF466TZM.bam released s3://encode-public/2020/06/02/1044fe3d-0e14-492a-a4b0-11fbc6e2b1d1/ENCFF466TZM.bam ENCODE4 GRCh38 released ENCFF108TLC bam bam alignments GRCh38 ENCSR978LBS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF404TLY/, /files/ENCFF631KZD/ 3275562456 ENCODE Processing Pipeline 3b934eaf6bcb0bb7224f1e3c5e1f4819 https://www.encodeproject.org/files/ENCFF108TLC/@@download/ENCFF108TLC.bam released s3://encode-public/2020/06/02/9e135436-926f-4e9c-97a3-a44a95db5407/ENCFF108TLC.bam ENCODE4 GRCh38 released ENCFF375XFV bam bam unfiltered alignments hg19 ENCSR209YCR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF406XFM/ 3795796165 Michael Snyder, Stanford 66e0e81f2bf7d7fbc3c8f8f7c81b951a SRA:SRR5111322 https://www.encodeproject.org/files/ENCFF055UND/@@download/ENCFF055UND.fastq.gz Illumina HiSeq 2000 /files/ENCFF417ORB/, /files/ENCFF839JCV/ released s3://encode-public/2016/05/09/8656f95f-31b1-45c2-b2c7-526b22400d7e/ENCFF055UND.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF990ZOB bam bam alignments hg19 ENCSR209YCR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF055UND/, /files/ENCFF406XFM/ 6705950845 ENCODE Processing Pipeline fd2b97dbc74ea6d7736165c576052eb3 https://www.encodeproject.org/files/ENCFF990ZOB/@@download/ENCFF990ZOB.bam released s3://encode-public/2016/05/21/90bdbabb-18eb-4b28-97d5-4bbb3ad8de6e/ENCFF990ZOB.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF783ZDX bam bam unfiltered alignments GRCh38 ENCSR209YCR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF055UND/, /files/ENCFF406XFM/ 8168231698 ENCODE Processing Pipeline 193214eed566ee9a8ba701cab11160b9 https://www.encodeproject.org/files/ENCFF783ZDX/@@download/ENCFF783ZDX.bam released s3://encode-public/2016/10/29/0e932499-7c34-4794-81a3-f7e7de1f58e0/ENCFF783ZDX.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF680XQR bam bam alignments GRCh38 ENCSR209YCR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF055UND/, /files/ENCFF406XFM/ 6707586463 ENCODE Processing Pipeline 440e5940922f71666124d56b4511cdd9 https://www.encodeproject.org/files/ENCFF680XQR/@@download/ENCFF680XQR.bam released s3://encode-public/2016/10/29/f5cc126d-f895-4f45-b449-cb6c8ed7992c/ENCFF680XQR.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF696TKI bam bam alignments GRCh38 ENCSR209YCR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF406XFM/, /files/ENCFF055UND/ 6708327392 ENCODE Processing Pipeline 2118f3ef9644ff436aeae55ee72e8747 https://www.encodeproject.org/files/ENCFF696TKI/@@download/ENCFF696TKI.bam released s3://encode-public/2020/06/03/dbdb3249-13c0-4107-851d-2d73d7174ca2/ENCFF696TKI.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF139FXG bam bam unfiltered alignments GRCh38 ENCSR209YCR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/283337/'], '@type': ['Target', 'Item'], 'name': 'ZNF740-human', 'label': 'ZNF740', '@id': '/targets/ZNF740-human/', 'title': 'ZNF740 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0f7e59cc-b671-4e1b-ac7f-a6b39befd11a', 'status': 'released'} hg19 12 53412846 53616881 DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF406XFM/, /files/ENCFF055UND/ 8142037331 ENCODE Processing Pipeline 7152a04b919f7cbeda0345eb3dfc6b43 https://www.encodeproject.org/files/ENCFF139FXG/@@download/ENCFF139FXG.bam released s3://encode-public/2020/06/03/801dcc77-4c4a-4fe1-bfee-9edc144036b3/ENCFF139FXG.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF803CYD fastq fastq reads ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF180WPD/ 2934107284 Richard Myers, HAIB 2e08a031d8ce290ae4b7f3fedb686972 SRA:SRR6212893 https://www.encodeproject.org/files/ENCFF803CYD/@@download/ENCFF803CYD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/46c66d0e-02de-4212-9406-e7d61ec7980e/ENCFF803CYD.fastq.gz ENCFF180WPD fastq fastq reads ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF803CYD/ 3075152597 Richard Myers, HAIB 52945b90b51cf02a082620f2276b2960 SRA:SRR6212893 https://www.encodeproject.org/files/ENCFF180WPD/@@download/ENCFF180WPD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/7df70397-082a-4115-95a5-950dd9f0db5a/ENCFF180WPD.fastq.gz ENCFF447CVN bam bam unfiltered alignments hg19 ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF803CYD/, /files/ENCFF180WPD/ 7088637899 ENCODE Processing Pipeline bef3daec5b31341958efa7a80d498d81 https://www.encodeproject.org/files/ENCFF447CVN/@@download/ENCFF447CVN.bam released s3://encode-public/2017/02/02/768133d3-e2e6-4a04-9461-44e4c5e70132/ENCFF447CVN.bam ENCODE3 hg19 archived ENCFF877MHB bam bam alignments hg19 ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF803CYD/, /files/ENCFF180WPD/ 4935627436 ENCODE Processing Pipeline 295d84d1d8acfaa338f06b31764603b0 https://www.encodeproject.org/files/ENCFF877MHB/@@download/ENCFF877MHB.bam released s3://encode-public/2017/02/02/cfdfadf5-b9d0-43be-ae81-5584387d4ebc/ENCFF877MHB.bam ENCODE3 hg19 archived ENCFF491FCG bam bam alignments GRCh38 ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF803CYD/, /files/ENCFF180WPD/ 4944511070 ENCODE Processing Pipeline 23ad8d5df78a0bebb6a3abc150bc190d https://www.encodeproject.org/files/ENCFF491FCG/@@download/ENCFF491FCG.bam released s3://encode-public/2017/02/02/f7edbfa3-181a-4679-9081-d23a9870f63c/ENCFF491FCG.bam ENCODE3 GRCh38 archived ENCFF096ZLV bam bam unfiltered alignments GRCh38 ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF803CYD/, /files/ENCFF180WPD/ 7119144729 ENCODE Processing Pipeline 0f8ff133cf5aaa683808bbe2558e8665 https://www.encodeproject.org/files/ENCFF096ZLV/@@download/ENCFF096ZLV.bam released s3://encode-public/2017/02/02/e49dc85c-af42-49ae-bf79-fa9f04c477ef/ENCFF096ZLV.bam ENCODE3 GRCh38 archived ENCFF829FWW bam bam unfiltered alignments GRCh38 ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF803CYD/, /files/ENCFF180WPD/, /files/ENCFF110MCL/ 7128817541 ENCODE Processing Pipeline dfef9067999d4e4db4e8118b281d25af https://www.encodeproject.org/files/ENCFF829FWW/@@download/ENCFF829FWW.bam released s3://encode-public/2020/10/28/33077b72-abb5-4695-b6f4-1f33550ac6bf/ENCFF829FWW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF943HFE bam bam alignments GRCh38 ENCSR226SNN Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF803CYD/, /files/ENCFF180WPD/, /files/ENCFF110MCL/ 4689078113 ENCODE Processing Pipeline b2cafd8f3d4f6a78bdb7940c17f2aa7e https://www.encodeproject.org/files/ENCFF943HFE/@@download/ENCFF943HFE.bam released s3://encode-public/2020/10/28/ab2f4725-a3e3-4b0c-9b6e-7dfe82ef2e54/ENCFF943HFE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF876FKO fastq fastq reads ENCSR335XZL Control ChIP-seq /fly-donors/ENCDO977JDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31913/'], '@type': ['Target', 'Item'], 'name': 'Sp1-dmelanogaster', 'label': 'Sp1', '@id': '/targets/Sp1-dmelanogaster/', 'title': 'Sp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8793ad03-e723-4d50-baca-7fcc11390aad', 'status': 'released'} dm3 X 9588709 9674686 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2769322385 Kevin White, UChicago 5e78d58948a675b84944e85a135ca052 https://www.encodeproject.org/files/ENCFF876FKO/@@download/ENCFF876FKO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/79713740-7b07-4e58-9f7b-1bc1ad06f258/ENCFF876FKO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF192COY bam bam alignments dm6 ENCSR335XZL Control ChIP-seq /fly-donors/ENCDO977JDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31913/'], '@type': ['Target', 'Item'], 'name': 'Sp1-dmelanogaster', 'label': 'Sp1', '@id': '/targets/Sp1-dmelanogaster/', 'title': 'Sp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8793ad03-e723-4d50-baca-7fcc11390aad', 'status': 'released'} dm3 X 9588709 9674686 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF876FKO/, /files/ENCFF479RCH/ 3734475268 Kevin White, UChicago b950143e8d6bf79d43492022b0098e8d https://www.encodeproject.org/files/ENCFF192COY/@@download/ENCFF192COY.bam released s3://encode-public/2019/04/13/7add5289-a0bb-4179-a8d9-a6b39ab9a60a/ENCFF192COY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF624CXG bigWig bigWig read-depth normalized signal dm6 ENCSR335XZL Control ChIP-seq /fly-donors/ENCDO977JDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31913/'], '@type': ['Target', 'Item'], 'name': 'Sp1-dmelanogaster', 'label': 'Sp1', '@id': '/targets/Sp1-dmelanogaster/', 'title': 'Sp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8793ad03-e723-4d50-baca-7fcc11390aad', 'status': 'released'} dm3 X 9588709 9674686 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF192COY/ 17882640 Kevin White, UChicago b9d0d83976027696bef11eca1a8c5ff8 https://www.encodeproject.org/files/ENCFF624CXG/@@download/ENCFF624CXG.bigWig released s3://encode-public/2019/04/16/ce0009f2-aff8-4336-af60-2c11caf876cc/ENCFF624CXG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF762BOT bigWig bigWig signal of unique reads dm6 ENCSR335XZL Control ChIP-seq /fly-donors/ENCDO977JDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31913/'], '@type': ['Target', 'Item'], 'name': 'Sp1-dmelanogaster', 'label': 'Sp1', '@id': '/targets/Sp1-dmelanogaster/', 'title': 'Sp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8793ad03-e723-4d50-baca-7fcc11390aad', 'status': 'released'} dm3 X 9588709 9674686 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF192COY/ 17881100 Kevin White, UChicago 90ca537943b7f47439195ae90e6bf145 https://www.encodeproject.org/files/ENCFF762BOT/@@download/ENCFF762BOT.bigWig released s3://encode-public/2019/04/16/672db480-9287-49f2-a17f-2e8d75e674dc/ENCFF762BOT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF187XZY bam bam unfiltered alignments hg19 ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF381XXA/, /files/ENCFF807MUK/, /files/ENCFF180PND/ 3907903413 ENCODE Processing Pipeline badbce1383d0220dea0e656f1a221947 https://www.encodeproject.org/files/ENCFF187XZY/@@download/ENCFF187XZY.bam released s3://encode-public/2018/02/21/25e11074-3a41-469b-a597-5fe108762b25/ENCFF187XZY.bam ENCODE3 hg19 archived poor library complexity, severe bottlenecking ENCFF381XXA fastq fastq reads ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 single-ended 3003222392 Richard Myers, HAIB b1621ba9937e0f4b7c02ee742b8e44d8 SRA:SRR5339480 https://www.encodeproject.org/files/ENCFF381XXA/@@download/ENCFF381XXA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/869d92fb-f8e5-4790-b067-d947ced0a018/ENCFF381XXA.fastq.gz poor library complexity, severe bottlenecking ENCFF180PND fastq fastq reads ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 single-ended 3003222392 Richard Myers, HAIB 946c7636dd82599ea0198510276fda8d SRA:SRR5339481 https://www.encodeproject.org/files/ENCFF180PND/@@download/ENCFF180PND.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/c6c5c626-536f-45d9-9aa9-ae2e22fc070d/ENCFF180PND.fastq.gz poor library complexity, severe bottlenecking ENCFF935ZWS bam bam alignments hg19 ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF381XXA/, /files/ENCFF807MUK/, /files/ENCFF180PND/ 2412812733 ENCODE Processing Pipeline fe622ac7efb0a125b528967f048bea3d https://www.encodeproject.org/files/ENCFF935ZWS/@@download/ENCFF935ZWS.bam released s3://encode-public/2016/03/03/3398dc8c-d5cd-4e60-9d0b-a9869df4fd41/ENCFF935ZWS.bam ENCODE3 hg19 archived poor library complexity, severe bottlenecking ENCFF239NZB bam bam unfiltered alignments GRCh38 ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF381XXA/, /files/ENCFF643CGH/, /files/ENCFF180PND/ 3904304875 ENCODE Processing Pipeline 5dca53ee3d5673395e199b909703e048 https://www.encodeproject.org/files/ENCFF239NZB/@@download/ENCFF239NZB.bam released s3://encode-public/2016/05/06/3fcf1303-b888-40eb-bf89-69f3f1d4e609/ENCFF239NZB.bam ENCODE3 GRCh38 archived poor library complexity, severe bottlenecking ENCFF940GKZ bam bam alignments GRCh38 ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF381XXA/, /files/ENCFF643CGH/, /files/ENCFF180PND/ 2421008386 ENCODE Processing Pipeline b34133de0e5398d8b6e582be010a166b https://www.encodeproject.org/files/ENCFF940GKZ/@@download/ENCFF940GKZ.bam released s3://encode-public/2016/05/06/60e7011b-352c-4f61-bc89-a59fdc742cfa/ENCFF940GKZ.bam ENCODE3 GRCh38 archived poor library complexity, severe bottlenecking ENCFF213HNC bam bam alignments GRCh38 ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF381XXA/, /files/ENCFF180PND/ 2513044594 ENCODE Processing Pipeline 07943394004fdaf65fd9bc0c16bfaf40 https://www.encodeproject.org/files/ENCFF213HNC/@@download/ENCFF213HNC.bam released s3://encode-public/2020/11/05/a0712d5b-f69d-44c7-ae36-e5d167839bc5/ENCFF213HNC.bam ENCODE4 v1.6.1 GRCh38 released poor library complexity, severe bottlenecking ENCFF389CGW bam bam unfiltered alignments GRCh38 ENCSR890ZMI Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF381XXA/, /files/ENCFF180PND/ 3588862395 ENCODE Processing Pipeline def28c7376fc085123087d1b422658e8 https://www.encodeproject.org/files/ENCFF389CGW/@@download/ENCFF389CGW.bam released s3://encode-public/2020/11/05/00646630-8618-4cc9-8c5d-6db2871edc11/ENCFF389CGW.bam ENCODE4 v1.6.1 GRCh38 released poor library complexity, severe bottlenecking ENCFF656VEQ fastq fastq reads ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 single-ended 2366944398 Bradley Bernstein, Broad b56fe69e6d61d71e577865495e920c25 SRA:SRR5339240 https://www.encodeproject.org/files/ENCFF656VEQ/@@download/ENCFF656VEQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/11/f9b6631a-5c88-40e7-9803-1478aa2a8c9d/ENCFF656VEQ.fastq.gz ENCFF841FEP fastq fastq reads ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 single-ended 1920626131 Bradley Bernstein, Broad df1b6ef61bcbaee4f414eef7b356f7fd SRA:SRR5339239 https://www.encodeproject.org/files/ENCFF841FEP/@@download/ENCFF841FEP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/12/4af3d23c-b5db-4f66-a2fe-0722a624a44e/ENCFF841FEP.fastq.gz ENCFF302IIT bam bam alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF841FEP/ 1945910237 ENCODE Processing Pipeline 83cc81bf14f262cc7e2380424ee494ad https://www.encodeproject.org/files/ENCFF302IIT/@@download/ENCFF302IIT.bam released s3://encode-public/2016/04/23/a4a9cd79-9945-45eb-918f-cd4bfa8744bb/ENCFF302IIT.bam ENCODE3 GRCh38 archived ENCFF519CSM bam bam unfiltered alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF841FEP/ 2309908314 ENCODE Processing Pipeline bb3d86a6f720f7d5cee152b89b56878a https://www.encodeproject.org/files/ENCFF519CSM/@@download/ENCFF519CSM.bam released s3://encode-public/2016/05/05/1f4cc88c-32e0-4ae5-915f-a566c8165ce8/ENCFF519CSM.bam ENCODE3 GRCh38 archived ENCFF028KGR fastq fastq reads ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 single-ended 1180331096 Bradley Bernstein, Broad b84cc9cb73aa2308989a3ef00c8e5a7d SRA:SRR5339241 https://www.encodeproject.org/files/ENCFF028KGR/@@download/ENCFF028KGR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/1680693c-403e-4259-b3ce-eb542ef1a5db/ENCFF028KGR.fastq.gz ENCFF920FCI fastq fastq reads ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 single-ended 1131182693 Bradley Bernstein, Broad 3fbb19d784b24266a300434194ae0653 SRA:SRR5339242 https://www.encodeproject.org/files/ENCFF920FCI/@@download/ENCFF920FCI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/134943fb-ec70-42f5-9cc2-58a878b8950f/ENCFF920FCI.fastq.gz ENCFF935EPK bam bam unfiltered alignments hg19 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF841FEP/ 2303832351 ENCODE Processing Pipeline 5d6d82e1e338769c97428f6b9f36632f https://www.encodeproject.org/files/ENCFF935EPK/@@download/ENCFF935EPK.bam released s3://encode-public/2016/10/26/4829b594-ef63-46d6-940e-e2242e7be7bb/ENCFF935EPK.bam ENCODE3 hg19 archived ENCFF816XYV bam bam alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 /files/ENCFF028KGR/, /files/ENCFF643CGH/, /files/ENCFF920FCI/, /files/ENCFF656VEQ/ 4037250950 ENCODE Processing Pipeline f54c7763c2fb5cfb788139ed973eb013 https://www.encodeproject.org/files/ENCFF816XYV/@@download/ENCFF816XYV.bam released s3://encode-public/2016/10/26/eb47321e-2cdf-452d-b8c2-d8048f5a1e5e/ENCFF816XYV.bam ENCODE3 GRCh38 archived ENCFF845VSO bam bam unfiltered alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 /files/ENCFF028KGR/, /files/ENCFF643CGH/, /files/ENCFF920FCI/, /files/ENCFF656VEQ/ 4797910143 ENCODE Processing Pipeline 3ce6ac44209f5ff0f27dabfce4c2174e https://www.encodeproject.org/files/ENCFF845VSO/@@download/ENCFF845VSO.bam released s3://encode-public/2016/10/26/ff34759e-c635-4f59-816c-71826f2d9576/ENCFF845VSO.bam ENCODE3 GRCh38 archived ENCFF346LNS bam bam alignments hg19 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 /files/ENCFF028KGR/, /files/ENCFF807MUK/, /files/ENCFF920FCI/, /files/ENCFF656VEQ/ 4032534282 ENCODE Processing Pipeline 94005850006b5fcdec2ec23ada7c6835 https://www.encodeproject.org/files/ENCFF346LNS/@@download/ENCFF346LNS.bam released s3://encode-public/2016/10/26/35d96ae1-1024-455a-ac6f-df0259112afa/ENCFF346LNS.bam ENCODE3 hg19 archived ENCFF926SWP bam bam unfiltered alignments hg19 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 /files/ENCFF028KGR/, /files/ENCFF807MUK/, /files/ENCFF920FCI/, /files/ENCFF656VEQ/ 4784515733 ENCODE Processing Pipeline e5b529adecda97444498454c0073f649 https://www.encodeproject.org/files/ENCFF926SWP/@@download/ENCFF926SWP.bam released s3://encode-public/2016/10/26/99b09e94-467b-4300-b8df-c9311aa12a87/ENCFF926SWP.bam ENCODE3 hg19 archived ENCFF696UZI bam bam alignments hg19 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF841FEP/ 1944180031 ENCODE Processing Pipeline 83b4691e481ec97265d07b45c9260017 https://www.encodeproject.org/files/ENCFF696UZI/@@download/ENCFF696UZI.bam released s3://encode-public/2016/10/26/0739084b-783e-4506-b2f5-82d07c6e9951/ENCFF696UZI.bam ENCODE3 hg19 archived ENCFF374OLT bam bam alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF841FEP/, /files/ENCFF110MCL/ 1987479797 ENCODE Processing Pipeline 5ce023e7652ec62b594844f84cd63719 https://www.encodeproject.org/files/ENCFF374OLT/@@download/ENCFF374OLT.bam released s3://encode-public/2020/08/20/f8933994-8a40-4c8c-9073-b19f4379e55e/ENCFF374OLT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF970DGH bam bam unfiltered alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 /files/ENCFF656VEQ/, /files/ENCFF028KGR/, /files/ENCFF920FCI/, /files/ENCFF110MCL/ 4860359135 ENCODE Processing Pipeline 0e72992aa68d98271ec4263b6cab4248 https://www.encodeproject.org/files/ENCFF970DGH/@@download/ENCFF970DGH.bam released s3://encode-public/2020/08/20/62f0584c-437a-4677-803e-81df3cab5eac/ENCFF970DGH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF523MYH bam bam alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 1 1_1 76 /files/ENCFF656VEQ/, /files/ENCFF028KGR/, /files/ENCFF920FCI/, /files/ENCFF110MCL/ 4134070937 ENCODE Processing Pipeline f950a0d40fad8694d4d05804f64eb313 https://www.encodeproject.org/files/ENCFF523MYH/@@download/ENCFF523MYH.bam released s3://encode-public/2020/08/20/76da59eb-e252-44d4-ab69-6f8fe1951286/ENCFF523MYH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF800PBM bam bam unfiltered alignments GRCh38 ENCSR729MRJ Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens DNA 2016-04-27 ENCODE 200-600 2 2_1 76 /files/ENCFF841FEP/, /files/ENCFF110MCL/ 2342655038 ENCODE Processing Pipeline 3145629d45e0cdce4122cbc54e3b015f https://www.encodeproject.org/files/ENCFF800PBM/@@download/ENCFF800PBM.bam released s3://encode-public/2020/08/20/a22043ca-3b7a-4845-8306-3d5f74c3ff45/ENCFF800PBM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF300KPX fastq fastq reads ENCSR734WSG Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 996229936 Kevin White, UChicago dff218a8ef1b458ce662799c9fecc659 https://www.encodeproject.org/files/ENCFF300KPX/@@download/ENCFF300KPX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/b3bef109-449c-4512-9bbe-b58f749c8a23/ENCFF300KPX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF847GXN bam bam alignments dm6 ENCSR734WSG Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF300KPX/, /files/ENCFF479RCH/ 1302350658 Kevin White, UChicago ba10dbf14c09495e62bc68d6c43c322e https://www.encodeproject.org/files/ENCFF847GXN/@@download/ENCFF847GXN.bam released s3://encode-public/2019/04/13/f333c46e-706b-435a-9a2e-f48dc884fb12/ENCFF847GXN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF967FUZ bigWig bigWig read-depth normalized signal dm6 ENCSR734WSG Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF847GXN/ 17686894 Kevin White, UChicago c9ade3f017c30fa69c4dafbecf664059 https://www.encodeproject.org/files/ENCFF967FUZ/@@download/ENCFF967FUZ.bigWig released s3://encode-public/2019/04/16/5174421b-2110-4afd-81c2-c4fa0400327a/ENCFF967FUZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF799GEB bigWig bigWig signal of unique reads dm6 ENCSR734WSG Control ChIP-seq /fly-donors/ENCDO440VTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31165/'], '@type': ['Target', 'Item'], 'name': 'usp-dmelanogaster', 'label': 'usp', '@id': '/targets/usp-dmelanogaster/', 'title': 'usp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46b67963-5ffd-45f9-a939-01f6ea78dcc0', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF847GXN/ 17663094 Kevin White, UChicago 7704aafd8d28a4b46e8f17e9e5fbf4bd https://www.encodeproject.org/files/ENCFF799GEB/@@download/ENCFF799GEB.bigWig released s3://encode-public/2019/04/16/ad2597dd-281d-46b8-b21d-2faef047d0fc/ENCFF799GEB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF483YDA fastq fastq reads ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 single-ended 1699711211 Bradley Bernstein, Broad 9901fcbbe319cf6e95f5fd2a67611100 SRA:SRR5331347 https://www.encodeproject.org/files/ENCFF483YDA/@@download/ENCFF483YDA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/ae7bc667-7b28-4ad5-9cdf-ee203533f146/ENCFF483YDA.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF351AFB fastq fastq reads ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 single-ended 1886216899 Bradley Bernstein, Broad a7db3706b0b2c1e5db80210d6497c4ec SRA:SRR5331350 https://www.encodeproject.org/files/ENCFF351AFB/@@download/ENCFF351AFB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/84e83f40-ad9b-4dd6-97e0-1d316692213b/ENCFF351AFB.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF512OCG fastq fastq reads ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 single-ended 1799829250 Bradley Bernstein, Broad e12862be87c216c315bd0e1236b05b0c SRA:SRR5331351 https://www.encodeproject.org/files/ENCFF512OCG/@@download/ENCFF512OCG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/0eb62214-30b5-4b3a-a02c-b2a0269c5945/ENCFF512OCG.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF842VLR fastq fastq reads ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 single-ended 1788118952 Bradley Bernstein, Broad c4fc1ef9b3ca3a2453aacca2ec69757e SRA:SRR5331352 https://www.encodeproject.org/files/ENCFF842VLR/@@download/ENCFF842VLR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/32d24d50-5bf2-405c-836c-baefb2f4bbc7/ENCFF842VLR.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF549OKT fastq fastq reads ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 single-ended 1266380704 Bradley Bernstein, Broad 38f02b9a49287103880e5517010afa47 SRA:SRR5331348 https://www.encodeproject.org/files/ENCFF549OKT/@@download/ENCFF549OKT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/a11e9057-4280-4013-b2fe-8c8b84af25ab/ENCFF549OKT.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF029CBI fastq fastq reads ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 single-ended 1210448747 Bradley Bernstein, Broad 81d5755f13747047646e73eea1187196 SRA:SRR5331349 https://www.encodeproject.org/files/ENCFF029CBI/@@download/ENCFF029CBI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/21/5709b65e-dbbb-490a-847a-0b28d2088924/ENCFF029CBI.fastq.gz mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF443QQZ bam bam unfiltered alignments hg19 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 /files/ENCFF549OKT/, /files/ENCFF807MUK/, /files/ENCFF483YDA/, /files/ENCFF029CBI/ 4201680072 ENCODE Processing Pipeline e586e868e82340800a0e4bc595cdb7e2 https://www.encodeproject.org/files/ENCFF443QQZ/@@download/ENCFF443QQZ.bam released s3://encode-public/2016/10/26/d6d14c5c-2d51-416d-8d07-962fb3358352/ENCFF443QQZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF688ORY bam bam unfiltered alignments hg19 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 /files/ENCFF351AFB/, /files/ENCFF512OCG/, /files/ENCFF807MUK/, /files/ENCFF842VLR/ 4680875984 ENCODE Processing Pipeline 8d9cf24fbf2255b2a9f3e8256d9290ef https://www.encodeproject.org/files/ENCFF688ORY/@@download/ENCFF688ORY.bam released s3://encode-public/2016/10/26/051dbea6-a3c3-4a96-9574-798474a006e2/ENCFF688ORY.bam ENCODE3 hg19 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF892RJZ bam bam unfiltered alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 /files/ENCFF549OKT/, /files/ENCFF643CGH/, /files/ENCFF483YDA/, /files/ENCFF029CBI/ 4212935500 ENCODE Processing Pipeline d38cf89678987f79e732d9b5bbe66c23 https://www.encodeproject.org/files/ENCFF892RJZ/@@download/ENCFF892RJZ.bam released s3://encode-public/2016/10/26/3c59c9ef-bb4c-4cfa-9738-1fcc0cb5238c/ENCFF892RJZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF924RQL bam bam alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 /files/ENCFF549OKT/, /files/ENCFF643CGH/, /files/ENCFF483YDA/, /files/ENCFF029CBI/ 3393847278 ENCODE Processing Pipeline 9e52d8169f9bb7af98775af4459d9bfd https://www.encodeproject.org/files/ENCFF924RQL/@@download/ENCFF924RQL.bam released s3://encode-public/2016/10/26/d929b0d7-2e38-4741-9b94-299c338a324c/ENCFF924RQL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF626FKO bam bam alignments hg19 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 /files/ENCFF549OKT/, /files/ENCFF807MUK/, /files/ENCFF483YDA/, /files/ENCFF029CBI/ 3388702567 ENCODE Processing Pipeline 455c173e9d0efa136cbb60b04b8115ae https://www.encodeproject.org/files/ENCFF626FKO/@@download/ENCFF626FKO.bam released s3://encode-public/2016/10/26/99bcae5d-5437-4f11-bfea-8f50f4bdb880/ENCFF626FKO.bam ENCODE3 hg19 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF209QWM bam bam alignments hg19 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 /files/ENCFF351AFB/, /files/ENCFF512OCG/, /files/ENCFF807MUK/, /files/ENCFF842VLR/ 1696512518 ENCODE Processing Pipeline d356a78023bb9eba35142a86b9410b3f https://www.encodeproject.org/files/ENCFF209QWM/@@download/ENCFF209QWM.bam released s3://encode-public/2016/10/26/f0100dc3-bffb-4352-ba20-f7427519c542/ENCFF209QWM.bam ENCODE3 hg19 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF629XDJ bam bam unfiltered alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 /files/ENCFF351AFB/, /files/ENCFF512OCG/, /files/ENCFF842VLR/, /files/ENCFF643CGH/ 4689854671 ENCODE Processing Pipeline 20a2faec5dc1f31318006f079906eaa5 https://www.encodeproject.org/files/ENCFF629XDJ/@@download/ENCFF629XDJ.bam released s3://encode-public/2016/10/27/118de35d-9299-4595-a17a-6af7b4aa807a/ENCFF629XDJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF301JHG bam bam alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 /files/ENCFF351AFB/, /files/ENCFF512OCG/, /files/ENCFF842VLR/, /files/ENCFF643CGH/ 1698427925 ENCODE Processing Pipeline 3cdc98723f4ce317dd8b3a7f5ce80a50 https://www.encodeproject.org/files/ENCFF301JHG/@@download/ENCFF301JHG.bam released s3://encode-public/2016/10/27/d2eaad53-5314-4470-b043-5044e69e5d4f/ENCFF301JHG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF125JDF bam bam unfiltered alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF842VLR/, /files/ENCFF512OCG/, /files/ENCFF351AFB/ 4765664103 ENCODE Processing Pipeline 3f817dd13e0c909c1c67aa2339d706d3 https://www.encodeproject.org/files/ENCFF125JDF/@@download/ENCFF125JDF.bam released s3://encode-public/2020/08/20/bf496e12-1a51-4bb0-91c6-3eab97db321d/ENCFF125JDF.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF820FGI bam bam unfiltered alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF483YDA/, /files/ENCFF029CBI/, /files/ENCFF549OKT/ 4264009482 ENCODE Processing Pipeline 3e11df94d5b1705ff6e5ebad3e2e96b0 https://www.encodeproject.org/files/ENCFF820FGI/@@download/ENCFF820FGI.bam released s3://encode-public/2020/08/20/314324c4-e245-4cba-a399-77df85b07f37/ENCFF820FGI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF875XVX bam bam alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF842VLR/, /files/ENCFF512OCG/, /files/ENCFF351AFB/ 1741391377 ENCODE Processing Pipeline 2f40878bbe829ab9dfc42e9200274fef https://www.encodeproject.org/files/ENCFF875XVX/@@download/ENCFF875XVX.bam released s3://encode-public/2020/08/20/81b920e4-bdad-446b-a9d4-56618da21606/ENCFF875XVX.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF920KZO bam bam alignments GRCh38 ENCSR158PLZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-08-10 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF483YDA/, /files/ENCFF029CBI/, /files/ENCFF549OKT/ 3477901435 ENCODE Processing Pipeline b5e744d5340d7f779bd380f94d79469b https://www.encodeproject.org/files/ENCFF920KZO/@@download/ENCFF920KZO.bam released s3://encode-public/2020/08/20/af8876ed-0761-4c1b-8887-0d43dcdff183/ENCFF920KZO.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking poor library complexity, severe bottlenecking ENCFF411YAO fastq fastq reads ENCSR238YEP Control ChIP-seq /fly-donors/ENCDO371QQX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32291/'], '@type': ['Target', 'Item'], 'name': 'dmrt11E-dmelanogaster', 'label': 'dmrt11E', '@id': '/targets/dmrt11E-dmelanogaster/', 'title': 'dmrt11E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6975c29e-ba09-4c9b-985f-d8cc077574a1', 'status': 'released'} dm3 X 13356035 13377474 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1063624782 Kevin White, UChicago 59edf912a8b2b0639b1b816789cd06c4 https://www.encodeproject.org/files/ENCFF411YAO/@@download/ENCFF411YAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/92fe3e1b-c390-4818-8ae5-bad805bca175/ENCFF411YAO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF062LTR bam bam alignments dm6 ENCSR238YEP Control ChIP-seq /fly-donors/ENCDO371QQX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32291/'], '@type': ['Target', 'Item'], 'name': 'dmrt11E-dmelanogaster', 'label': 'dmrt11E', '@id': '/targets/dmrt11E-dmelanogaster/', 'title': 'dmrt11E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6975c29e-ba09-4c9b-985f-d8cc077574a1', 'status': 'released'} dm3 X 13356035 13377474 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF411YAO/, /files/ENCFF479RCH/ 1457257814 Kevin White, UChicago cd1e59d626386006590e6421dec0823c https://www.encodeproject.org/files/ENCFF062LTR/@@download/ENCFF062LTR.bam released s3://encode-public/2018/12/07/0c86e1f0-804a-45ee-b4b8-566f5e071403/ENCFF062LTR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF093BWH bigWig bigWig read-depth normalized signal dm6 ENCSR238YEP Control ChIP-seq /fly-donors/ENCDO371QQX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32291/'], '@type': ['Target', 'Item'], 'name': 'dmrt11E-dmelanogaster', 'label': 'dmrt11E', '@id': '/targets/dmrt11E-dmelanogaster/', 'title': 'dmrt11E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6975c29e-ba09-4c9b-985f-d8cc077574a1', 'status': 'released'} dm3 X 13356035 13377474 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF062LTR/ 17883229 Kevin White, UChicago b163c21f51b2892e5e8e3d23a52ac39d https://www.encodeproject.org/files/ENCFF093BWH/@@download/ENCFF093BWH.bigWig released s3://encode-public/2018/12/10/74939512-431b-484f-8edd-61e8fe5625b5/ENCFF093BWH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF137WPR bigWig bigWig signal of unique reads dm6 ENCSR238YEP Control ChIP-seq /fly-donors/ENCDO371QQX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32291/'], '@type': ['Target', 'Item'], 'name': 'dmrt11E-dmelanogaster', 'label': 'dmrt11E', '@id': '/targets/dmrt11E-dmelanogaster/', 'title': 'dmrt11E (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6975c29e-ba09-4c9b-985f-d8cc077574a1', 'status': 'released'} dm3 X 13356035 13377474 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF062LTR/ 17811091 Kevin White, UChicago d2054f7187d42f6384d586da5e639d5a https://www.encodeproject.org/files/ENCFF137WPR/@@download/ENCFF137WPR.bigWig released s3://encode-public/2018/12/10/5c948047-ce59-4fb8-90a0-1ba642acad93/ENCFF137WPR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF144YYR fastq fastq reads ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1 1_1 34 single-ended 167750992 Kevin White, UChicago 59dc664bb6e32715c5c66f3a4be8fde9 https://www.encodeproject.org/files/ENCFF144YYR/@@download/ENCFF144YYR.fastq.gz Illumina Genome Analyzer I /files/ENCFF482NFO/, /files/ENCFF592XDE/, /files/ENCFF494QQI/ released s3://encode-public/2016/10/25/21da5e20-4cd3-4d03-96bc-50868d0cc3bf/ENCFF144YYR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF160TQD fastq fastq reads ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': 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organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1 1_1 34 /files/ENCFF144YYR/, /files/ENCFF987UMF/ 157001238 Kevin White, UChicago e7b3b69020428a9fbb689a0bd37dd8c7 https://www.encodeproject.org/files/ENCFF688XQB/@@download/ENCFF688XQB.bam released s3://encode-public/2016/10/26/05f2154e-6bdb-450b-b4b3-98e220560d35/ENCFF688XQB.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF741MDQ bam bam alignments ce10 ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 2 2_1 34 /files/ENCFF160TQD/, /files/ENCFF987UMF/ 157741641 Kevin White, UChicago b17cfda4a8db333f76b186a38f57e570 https://www.encodeproject.org/files/ENCFF741MDQ/@@download/ENCFF741MDQ.bam released s3://encode-public/2016/10/26/7e1535e3-1e0b-476b-8161-a88f10df9e89/ENCFF741MDQ.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF695EKO bam bam alignments ce11 ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1 1_1 34 /files/ENCFF144YYR/, /files/ENCFF586MOL/ 157173180 Kevin White, UChicago ce8682ca1ae5192d40cc3ca46d38aadd https://www.encodeproject.org/files/ENCFF695EKO/@@download/ENCFF695EKO.bam released s3://encode-public/2016/10/26/09b98215-74c4-4494-90c2-f7c847a51d45/ENCFF695EKO.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF638KLS bam bam alignments ce11 ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 2 2_1 34 /files/ENCFF160TQD/, /files/ENCFF586MOL/ 157879105 Kevin White, UChicago 1803f3523d310ebe50eb6693802fffbc https://www.encodeproject.org/files/ENCFF638KLS/@@download/ENCFF638KLS.bam released s3://encode-public/2016/10/26/72cb6a4e-8162-4c64-b905-935c4a71cb6e/ENCFF638KLS.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF758ARY bigWig bigWig signal of unique reads ce10 ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF688XQB/, /files/ENCFF741MDQ/ 10069447 Kevin White, UChicago f7ebce764f5e7ad95918e171531f0209 https://www.encodeproject.org/files/ENCFF758ARY/@@download/ENCFF758ARY.bigWig released s3://encode-public/2016/10/26/9715b3c6-bb21-44af-a6b1-870e454d3f4e/ENCFF758ARY.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF046GMT bigWig bigWig read-depth normalized signal ce10 ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF688XQB/, /files/ENCFF741MDQ/ 10091051 Kevin White, UChicago aeffc4e729dc4798f9f73e2a4a9c6587 https://www.encodeproject.org/files/ENCFF046GMT/@@download/ENCFF046GMT.bigWig released s3://encode-public/2016/10/26/3a363b9b-f462-4845-b5fe-678a402dc68c/ENCFF046GMT.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF200YIR bigWig bigWig read-depth normalized signal ce11 ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF695EKO/, /files/ENCFF638KLS/ 10090792 Kevin White, UChicago fb960986072054f11d550984212fcf0f https://www.encodeproject.org/files/ENCFF200YIR/@@download/ENCFF200YIR.bigWig released s3://encode-public/2016/10/26/8d4b848c-bec9-42d5-9b5e-34c936b9a17d/ENCFF200YIR.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF150ASW bigWig bigWig signal of unique reads ce11 ENCSR430JDM Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF695EKO/, /files/ENCFF638KLS/ 10071721 Kevin White, UChicago 56c6e284ff402b2b7cbd0d69ac4b9d9c https://www.encodeproject.org/files/ENCFF150ASW/@@download/ENCFF150ASW.bigWig released s3://encode-public/2016/10/26/c9b6f347-bc0b-48f5-99d4-0d757223a576/ENCFF150ASW.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF984CIZ fastq fastq reads ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF187PGU/ 2207897455 Michael Snyder, Stanford bf3933063fb02a3e8c751cd9565a875f SRA:SRR8659947 https://www.encodeproject.org/files/ENCFF984CIZ/@@download/ENCFF984CIZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/881c0ec7-0c3a-4035-a587-f840a046b3d9/ENCFF984CIZ.fastq.gz ENCFF187PGU fastq fastq reads ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF984CIZ/ 2159122474 Michael Snyder, Stanford c24c97ee2f289672a28608e07fadfd72 SRA:SRR8659947 https://www.encodeproject.org/files/ENCFF187PGU/@@download/ENCFF187PGU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/ec18f8a7-b77d-47c2-aa65-c1857520a89e/ENCFF187PGU.fastq.gz ENCFF856KFW bam bam unfiltered alignments GRCh38 ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF187PGU/, /files/ENCFF984CIZ/, /files/ENCFF643CGH/ 4865894589 ENCODE Processing Pipeline d42fcc6916124402a12c0579d72ef5e8 https://www.encodeproject.org/files/ENCFF856KFW/@@download/ENCFF856KFW.bam released s3://encode-public/2016/05/06/6a25bb7c-ed9e-4aa1-bd15-bcc836e89f94/ENCFF856KFW.bam ENCODE3 GRCh38 archived ENCFF474ZRE bam bam alignments GRCh38 ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF187PGU/, /files/ENCFF984CIZ/, /files/ENCFF643CGH/ 3969146558 ENCODE Processing Pipeline e39289311c07d9063709934527c079d8 https://www.encodeproject.org/files/ENCFF474ZRE/@@download/ENCFF474ZRE.bam released s3://encode-public/2016/05/06/1ee4a669-6fbb-4984-bf78-2065c28ff12c/ENCFF474ZRE.bam ENCODE3 GRCh38 archived ENCFF378SHG bam bam unfiltered alignments hg19 ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF187PGU/, /files/ENCFF984CIZ/, /files/ENCFF807MUK/ 4858709271 ENCODE Processing Pipeline 824e692ea5ecf14ddbbb19ea3e6d234f https://www.encodeproject.org/files/ENCFF378SHG/@@download/ENCFF378SHG.bam released s3://encode-public/2016/12/06/eb4ecd3a-729f-4cc3-bd84-ac30d3837264/ENCFF378SHG.bam ENCODE3 hg19 archived ENCFF568NMP bam bam alignments hg19 ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF187PGU/, /files/ENCFF984CIZ/, /files/ENCFF807MUK/ 3957537560 ENCODE Processing Pipeline 1946fce95b80dbe3565bf69a1d6d6295 https://www.encodeproject.org/files/ENCFF568NMP/@@download/ENCFF568NMP.bam released s3://encode-public/2016/12/06/4c6a7c63-6b84-4743-a012-6e67dd4433cf/ENCFF568NMP.bam ENCODE3 hg19 archived ENCFF488CLX bam bam alignments GRCh38 ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF187PGU/, /files/ENCFF110MCL/, /files/ENCFF984CIZ/ 3888524798 ENCODE Processing Pipeline 1d85a85e9bf67d89ccd74278673ca2c6 https://www.encodeproject.org/files/ENCFF488CLX/@@download/ENCFF488CLX.bam released s3://encode-public/2020/06/13/40e42530-e784-4708-a3c8-015026611e70/ENCFF488CLX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF674UGH bam bam unfiltered alignments GRCh38 ENCSR535KIQ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF187PGU/, /files/ENCFF110MCL/, /files/ENCFF984CIZ/ 4849853037 ENCODE Processing Pipeline bf83561cc3340f73813c3ed8c1851652 https://www.encodeproject.org/files/ENCFF674UGH/@@download/ENCFF674UGH.bam released s3://encode-public/2020/06/13/fa92a646-e569-40f8-8f9d-1b17f7549db5/ENCFF674UGH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF157DIE fastq fastq reads ENCSR178NGG Control ChIP-seq /fly-donors/ENCDO745SWU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39301/'], '@type': ['Target', 'Item'], 'name': 'CG7368-dmelanogaster', 'label': 'CG7368', '@id': '/targets/CG7368-dmelanogaster/', 'title': 'CG7368 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '59d9306f-a174-4c4c-9174-6641852b0b40', 'status': 'released'} dm3 3L 11578741 11600904 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 525722197 Kevin White, UChicago 01402a189f9f520cf4f70fb98d2de37e https://www.encodeproject.org/files/ENCFF157DIE/@@download/ENCFF157DIE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/2ce6d355-e427-4849-82d3-f0cd9040c8d3/ENCFF157DIE.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF750ENU bam bam alignments dm3 ENCSR178NGG Control ChIP-seq /fly-donors/ENCDO745SWU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39301/'], '@type': ['Target', 'Item'], 'name': 'CG7368-dmelanogaster', 'label': 'CG7368', '@id': '/targets/CG7368-dmelanogaster/', 'title': 'CG7368 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '59d9306f-a174-4c4c-9174-6641852b0b40', 'status': 'released'} dm3 3L 11578741 11600904 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF157DIE/ 627845271 Kevin White, UChicago db5d6bb225b7ac6e4fddb8e0ff4d6459 https://www.encodeproject.org/files/ENCFF750ENU/@@download/ENCFF750ENU.bam released s3://encode-public/2016/04/10/5b15300f-79ac-4f12-9c06-61b3e151fe6f/ENCFF750ENU.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF330VBH bigWig bigWig signal of unique reads dm3 ENCSR178NGG Control ChIP-seq /fly-donors/ENCDO745SWU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39301/'], '@type': ['Target', 'Item'], 'name': 'CG7368-dmelanogaster', 'label': 'CG7368', '@id': '/targets/CG7368-dmelanogaster/', 'title': 'CG7368 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '59d9306f-a174-4c4c-9174-6641852b0b40', 'status': 'released'} dm3 3L 11578741 11600904 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF750ENU/ 15093192 Kevin White, UChicago 032fc6aefbfe94bca9db6e2292a4c965 https://www.encodeproject.org/files/ENCFF330VBH/@@download/ENCFF330VBH.bigWig released s3://encode-public/2016/04/11/a346781a-f27f-4801-ad2d-a49e287246fb/ENCFF330VBH.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF261HIY bigWig bigWig read-depth normalized signal dm3 ENCSR178NGG Control ChIP-seq /fly-donors/ENCDO745SWU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39301/'], '@type': ['Target', 'Item'], 'name': 'CG7368-dmelanogaster', 'label': 'CG7368', '@id': '/targets/CG7368-dmelanogaster/', 'title': 'CG7368 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '59d9306f-a174-4c4c-9174-6641852b0b40', 'status': 'released'} dm3 3L 11578741 11600904 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF750ENU/ 15107623 Kevin White, UChicago edc812ac69d428e867f956cef55eff5f https://www.encodeproject.org/files/ENCFF261HIY/@@download/ENCFF261HIY.bigWig released s3://encode-public/2016/04/11/5e95ae3d-52e7-4c97-b91d-c150d294fb99/ENCFF261HIY.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF401WTF bam bam alignments dm6 ENCSR178NGG Control ChIP-seq /fly-donors/ENCDO745SWU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39301/'], '@type': ['Target', 'Item'], 'name': 'CG7368-dmelanogaster', 'label': 'CG7368', '@id': '/targets/CG7368-dmelanogaster/', 'title': 'CG7368 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '59d9306f-a174-4c4c-9174-6641852b0b40', 'status': 'released'} dm3 3L 11578741 11600904 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF157DIE/ 625337075 Kevin White, UChicago 0d8405cfa087efe7df15066135def862 https://www.encodeproject.org/files/ENCFF401WTF/@@download/ENCFF401WTF.bam released s3://encode-public/2016/04/21/330d91f8-318a-4eb8-95e8-32169d614b89/ENCFF401WTF.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF893XJM bigWig bigWig signal of unique reads dm6 ENCSR178NGG Control ChIP-seq /fly-donors/ENCDO745SWU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39301/'], '@type': ['Target', 'Item'], 'name': 'CG7368-dmelanogaster', 'label': 'CG7368', '@id': '/targets/CG7368-dmelanogaster/', 'title': 'CG7368 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '59d9306f-a174-4c4c-9174-6641852b0b40', 'status': 'released'} dm3 3L 11578741 11600904 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF401WTF/ 17162820 Kevin White, UChicago b9978ea8390e364cd92e8c2f2f425131 https://www.encodeproject.org/files/ENCFF893XJM/@@download/ENCFF893XJM.bigWig released s3://encode-public/2016/06/21/f9df5d53-4e86-42e8-9de3-ce53b8de3417/ENCFF893XJM.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF945XAK bigWig bigWig read-depth normalized signal dm6 ENCSR178NGG Control ChIP-seq /fly-donors/ENCDO745SWU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39301/'], '@type': ['Target', 'Item'], 'name': 'CG7368-dmelanogaster', 'label': 'CG7368', '@id': '/targets/CG7368-dmelanogaster/', 'title': 'CG7368 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '59d9306f-a174-4c4c-9174-6641852b0b40', 'status': 'released'} dm3 3L 11578741 11600904 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF401WTF/ 17183798 Kevin White, UChicago fa3b6e4bb4d53fe76da0e7da258821d3 https://www.encodeproject.org/files/ENCFF945XAK/@@download/ENCFF945XAK.bigWig released s3://encode-public/2016/06/21/0b3fab24-d362-416b-8771-1faf4d33eefd/ENCFF945XAK.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF590ZMO fastq fastq reads ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 128155585 Michael Snyder, Stanford c1de9332185dfa45ea86b1d618e3eb08 https://www.encodeproject.org/files/ENCFF590ZMO/@@download/ENCFF590ZMO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/cecad419-7002-4a98-81e6-9ea4d1afd81b/ENCFF590ZMO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF144VMB fastq fastq reads ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 110398463 Michael Snyder, Stanford 95b8220001c3d4940f429fa734caabe9 https://www.encodeproject.org/files/ENCFF144VMB/@@download/ENCFF144VMB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/6ec638c9-ef0a-4a69-8b09-8f496d89d019/ENCFF144VMB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF141KEV bam bam alignments ce10 ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF590ZMO/, /files/ENCFF144VMB/, /files/ENCFF987UMF/ 293800529 Kevin White, UChicago 0b93368df24e90195dc36f5295791088 https://www.encodeproject.org/files/ENCFF141KEV/@@download/ENCFF141KEV.bam released s3://encode-public/2016/10/18/b71d8042-a56a-453a-b15e-7707fec32e43/ENCFF141KEV.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF638IMH bam bam alignments ce11 ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF590ZMO/, /files/ENCFF144VMB/, /files/ENCFF586MOL/ 294100863 Kevin White, UChicago bdd7b55dc72a800410d9d78ac467005d https://www.encodeproject.org/files/ENCFF638IMH/@@download/ENCFF638IMH.bam released s3://encode-public/2016/10/19/c9f48cb3-c502-496c-aff1-9764986b86fc/ENCFF638IMH.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF767COP bigWig bigWig signal of unique reads ce10 ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF141KEV/ 10010078 Kevin White, UChicago 070de59ab0d45a08ed10dbc45f41ea57 https://www.encodeproject.org/files/ENCFF767COP/@@download/ENCFF767COP.bigWig released s3://encode-public/2016/10/20/8c5175f2-563f-4895-9f04-9673065995a5/ENCFF767COP.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF774EVW bigWig bigWig read-depth normalized signal ce10 ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF141KEV/ 10036621 Kevin White, UChicago 4a54f4c7025a5c62c54f435c6e91da2a https://www.encodeproject.org/files/ENCFF774EVW/@@download/ENCFF774EVW.bigWig released s3://encode-public/2016/10/20/501b20b4-8efc-4f34-818a-effc3dcd2237/ENCFF774EVW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF552UKC bigWig bigWig read-depth normalized signal ce11 ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF638IMH/ 10032879 Kevin White, UChicago 8a898f12b1b9ef5d439b1c884b6ade04 https://www.encodeproject.org/files/ENCFF552UKC/@@download/ENCFF552UKC.bigWig released s3://encode-public/2016/10/20/268c0075-ec92-480c-9cdc-4d55b4ea0023/ENCFF552UKC.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF460BPB bigWig bigWig signal of unique reads ce11 ENCSR008GMV Control ChIP-seq /worm-donors/ENCDO591YKX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF638IMH/ 10006572 Kevin White, UChicago 90ecf67f3a6a016133c2323ad6f944f5 https://www.encodeproject.org/files/ENCFF460BPB/@@download/ENCFF460BPB.bigWig released s3://encode-public/2016/10/20/034ceb83-5356-4754-95af-cd51cc2539ab/ENCFF460BPB.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF424BPK fastq fastq reads ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 184954031 Michael Snyder, Stanford 8443736aadeca9e1ed8d64d0bdb045af https://www.encodeproject.org/files/ENCFF424BPK/@@download/ENCFF424BPK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2bb71e36-3347-4e00-83c6-6eea52eca0c3/ENCFF424BPK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF760ZUI fastq fastq reads ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 170048239 Michael Snyder, Stanford ac14f61f0709fef453151cc1cd56cb79 https://www.encodeproject.org/files/ENCFF760ZUI/@@download/ENCFF760ZUI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/38acc2fc-dfce-4c03-aee2-c829d49ad0d9/ENCFF760ZUI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF422AYX bam bam alignments ce10 ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF760ZUI/, /files/ENCFF424BPK/, /files/ENCFF987UMF/ 359664949 Kevin White, UChicago 426a63224f64c7f8326c08d8e9eb6399 https://www.encodeproject.org/files/ENCFF422AYX/@@download/ENCFF422AYX.bam released s3://encode-public/2016/10/18/15fa37d0-fe50-407b-a443-ad5f4dad121f/ENCFF422AYX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF624KUW bam bam alignments ce11 ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF760ZUI/, /files/ENCFF424BPK/, /files/ENCFF586MOL/ 359950777 Kevin White, UChicago 690376c439c8c144f95428f9debaac34 https://www.encodeproject.org/files/ENCFF624KUW/@@download/ENCFF624KUW.bam released s3://encode-public/2016/10/19/40147861-339a-4688-b709-fcd773f5fb0a/ENCFF624KUW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF764LOD bigWig bigWig read-depth normalized signal ce10 ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF422AYX/ 10036790 Kevin White, UChicago 5a62a34cf88ec69fd26de5e51ccf196c https://www.encodeproject.org/files/ENCFF764LOD/@@download/ENCFF764LOD.bigWig released s3://encode-public/2016/10/20/ef9fc00e-2f07-4fc9-86ed-c3f37bdef15b/ENCFF764LOD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF943RVG bigWig bigWig signal of unique reads ce10 ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF422AYX/ 10031118 Kevin White, UChicago 227c1d36120082b3e15a33fcf0d640f7 https://www.encodeproject.org/files/ENCFF943RVG/@@download/ENCFF943RVG.bigWig released s3://encode-public/2016/10/20/b33a070d-c39d-4938-be08-bca3a2745cf7/ENCFF943RVG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF478IJS bigWig bigWig read-depth normalized signal ce11 ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF624KUW/ 10032039 Kevin White, UChicago 40fbb9133b3dd2de2f24a63f4ef09ff9 https://www.encodeproject.org/files/ENCFF478IJS/@@download/ENCFF478IJS.bigWig released s3://encode-public/2016/10/21/4138488d-2f3e-4beb-8c2c-bafd26084289/ENCFF478IJS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF456GXF bigWig bigWig signal of unique reads ce11 ENCSR978XQS Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF624KUW/ 10026002 Kevin White, UChicago 06a3495d3048c110751e0342f0596af4 https://www.encodeproject.org/files/ENCFF456GXF/@@download/ENCFF456GXF.bigWig released s3://encode-public/2016/10/21/14ad80e3-2d0c-4d77-9c2b-f01d9e430741/ENCFF456GXF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF239BXG fastq fastq reads ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 150003573 Michael Snyder, Stanford 3f34dbc743718ca5e4df6106ef3b62e1 https://www.encodeproject.org/files/ENCFF239BXG/@@download/ENCFF239BXG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b2755748-719e-47bb-a4c5-e33a407c8dd9/ENCFF239BXG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF287LFK fastq fastq reads ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 176623801 Michael Snyder, Stanford 4711bbdd28fc87361cda6d868d1d3069 https://www.encodeproject.org/files/ENCFF287LFK/@@download/ENCFF287LFK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f25be6d4-af1b-4dec-a659-5412af53a5a7/ENCFF287LFK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF536MDV bam bam alignments ce10 ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF239BXG/, /files/ENCFF287LFK/, /files/ENCFF987UMF/ 192186338 Kevin White, UChicago b9cc1191f6f9a9a2341a5428eaf40e2f https://www.encodeproject.org/files/ENCFF536MDV/@@download/ENCFF536MDV.bam released s3://encode-public/2016/10/18/c7731d64-6aad-4214-8e68-bb1d59d65c22/ENCFF536MDV.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF485MHP bam bam alignments ce11 ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF239BXG/, /files/ENCFF287LFK/, /files/ENCFF586MOL/ 192382115 Kevin White, UChicago df822aafb1114213008e4f0c376767e5 https://www.encodeproject.org/files/ENCFF485MHP/@@download/ENCFF485MHP.bam released s3://encode-public/2016/10/19/856abd40-7b87-4df1-b68c-56b7445a8436/ENCFF485MHP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF394TCD bigWig bigWig read-depth normalized signal ce10 ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF536MDV/ 9992104 Kevin White, UChicago 52c96fbc3063b51455265cbeaf46160d https://www.encodeproject.org/files/ENCFF394TCD/@@download/ENCFF394TCD.bigWig released s3://encode-public/2016/10/20/34e88a84-92fb-4f9c-a84e-5d99d911fd48/ENCFF394TCD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF429AZO bigWig bigWig signal of unique reads ce10 ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF536MDV/ 10031752 Kevin White, UChicago a7024086e2b8dda64f44e6071861a0d2 https://www.encodeproject.org/files/ENCFF429AZO/@@download/ENCFF429AZO.bigWig released s3://encode-public/2016/10/20/62dc96d4-8d34-48a0-8a38-29e418b3346c/ENCFF429AZO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF518XFD bigWig bigWig signal of unique reads ce11 ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF485MHP/ 10029286 Kevin White, UChicago 2ab2fbde624b24bd94cccad6b0b8a271 https://www.encodeproject.org/files/ENCFF518XFD/@@download/ENCFF518XFD.bigWig released s3://encode-public/2016/10/21/f4713153-c191-45ec-a60a-e4d24d19e264/ENCFF518XFD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF922AAP bigWig bigWig read-depth normalized signal ce11 ENCSR482PKO Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF485MHP/ 9986676 Kevin White, UChicago bb3f985c1dfb0d2d8ff6bd845d2a6dde https://www.encodeproject.org/files/ENCFF922AAP/@@download/ENCFF922AAP.bigWig released s3://encode-public/2016/10/21/b7e21aca-85d6-47cc-8a97-19a8cf394000/ENCFF922AAP.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF574ZMH fastq fastq reads ENCSR440KRG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-716'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/203523/'], '@type': ['Target', 'Item'], 'name': 'ZNF449-human', 'label': 'ZNF449', '@id': '/targets/ZNF449-human/', 'title': 'ZNF449 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e4c80a76-4f8f-41af-9dd3-0d0219176681', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF920TTF/ 2228576130 Michael Snyder, Stanford 353276f8210ec2c8a57ea5869bd58894 https://www.encodeproject.org/files/ENCFF574ZMH/@@download/ENCFF574ZMH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/abd7ff90-e84c-419e-b9da-d118e66d74b9/ENCFF574ZMH.fastq.gz mild to moderate bottlenecking missing compliant biosample characterization ENCFF920TTF fastq fastq reads ENCSR440KRG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-716'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/203523/'], '@type': ['Target', 'Item'], 'name': 'ZNF449-human', 'label': 'ZNF449', '@id': '/targets/ZNF449-human/', 'title': 'ZNF449 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e4c80a76-4f8f-41af-9dd3-0d0219176681', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF574ZMH/ 2400027007 Michael Snyder, Stanford 17f841336d64ae484ee72a6cbf3eb4d7 https://www.encodeproject.org/files/ENCFF920TTF/@@download/ENCFF920TTF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/23ac875c-5b47-4ae9-a26d-084e7c7d7f1d/ENCFF920TTF.fastq.gz mild to moderate bottlenecking missing compliant biosample characterization ENCFF523DVD bam bam unfiltered alignments GRCh38 ENCSR440KRG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-716'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/203523/'], '@type': ['Target', 'Item'], 'name': 'ZNF449-human', 'label': 'ZNF449', '@id': '/targets/ZNF449-human/', 'title': 'ZNF449 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e4c80a76-4f8f-41af-9dd3-0d0219176681', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF574ZMH/, /files/ENCFF920TTF/ 4529115246 ENCODE Processing Pipeline 50f18f056f8784e763d805aef37830c7 https://www.encodeproject.org/files/ENCFF523DVD/@@download/ENCFF523DVD.bam released s3://encode-public/2020/05/15/cda348a1-4e0d-479a-984d-f25ff24eb3a0/ENCFF523DVD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking missing compliant biosample characterization ENCFF010FRN bam bam alignments GRCh38 ENCSR440KRG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-716'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/203523/'], '@type': ['Target', 'Item'], 'name': 'ZNF449-human', 'label': 'ZNF449', '@id': '/targets/ZNF449-human/', 'title': 'ZNF449 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e4c80a76-4f8f-41af-9dd3-0d0219176681', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF574ZMH/, /files/ENCFF920TTF/ 3458344635 ENCODE Processing Pipeline e654992354eaf406b38272e450ab41af https://www.encodeproject.org/files/ENCFF010FRN/@@download/ENCFF010FRN.bam released s3://encode-public/2020/05/15/df7d76ea-ed7c-41d2-a61d-dbf69b288c1c/ENCFF010FRN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking missing compliant biosample characterization ENCFF424EYH fastq fastq reads ENCSR385NZN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4088/'], '@type': ['Target', 'Item'], 'name': 'SMAD3-human', 'label': 'SMAD3', '@id': '/targets/SMAD3-human/', 'title': 'SMAD3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b5562651-8cc2-41d7-8e77-ea9511087f28', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF849OFN/ 2452182010 Michael Snyder, Stanford 31e3633093db1b74e6eee48ba3601ed1 SRA:SRR14107136 https://www.encodeproject.org/files/ENCFF424EYH/@@download/ENCFF424EYH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/8c0c2a9d-0ffb-43e7-8f2e-b15ae5a4569c/ENCFF424EYH.fastq.gz mild to moderate bottlenecking ENCFF849OFN fastq fastq reads ENCSR385NZN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4088/'], '@type': ['Target', 'Item'], 'name': 'SMAD3-human', 'label': 'SMAD3', '@id': '/targets/SMAD3-human/', 'title': 'SMAD3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b5562651-8cc2-41d7-8e77-ea9511087f28', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF424EYH/ 2686825878 Michael Snyder, Stanford f3ff34d215ece106403bd4fc42c99d6d SRA:SRR14107136 https://www.encodeproject.org/files/ENCFF849OFN/@@download/ENCFF849OFN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/264b8d2c-7690-4601-b5ee-88c0c8cfd7a9/ENCFF849OFN.fastq.gz mild to moderate bottlenecking ENCFF712PUB bam bam unfiltered alignments GRCh38 ENCSR385NZN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4088/'], '@type': ['Target', 'Item'], 'name': 'SMAD3-human', 'label': 'SMAD3', '@id': '/targets/SMAD3-human/', 'title': 'SMAD3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b5562651-8cc2-41d7-8e77-ea9511087f28', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF424EYH/, /files/ENCFF849OFN/ 4944954771 ENCODE Processing Pipeline 96b8a8e0684d46406af2155b5d17460a https://www.encodeproject.org/files/ENCFF712PUB/@@download/ENCFF712PUB.bam released s3://encode-public/2020/04/21/15410141-d981-45a2-8c55-a6d5d988250f/ENCFF712PUB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF092EBW bam bam alignments GRCh38 ENCSR385NZN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4088/'], '@type': ['Target', 'Item'], 'name': 'SMAD3-human', 'label': 'SMAD3', '@id': '/targets/SMAD3-human/', 'title': 'SMAD3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b5562651-8cc2-41d7-8e77-ea9511087f28', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF424EYH/, /files/ENCFF849OFN/ 3650606949 ENCODE Processing Pipeline c20d9be9a565dde590ea3fb4db4e6de2 https://www.encodeproject.org/files/ENCFF092EBW/@@download/ENCFF092EBW.bam released s3://encode-public/2020/04/21/f3b9d24a-5996-4761-b545-8e786ab5d77a/ENCFF092EBW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF226IKV fastq fastq reads ENCSR737ZKM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54925/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN32-human', 'label': 'ZSCAN32', '@id': '/targets/ZSCAN32-human/', 'title': 'ZSCAN32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b7418fe-36a2-440a-be96-eba3cfa1f612', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF347UNM/ 2346576721 Michael Snyder, Stanford 7b86983a6a23279b96324249b8422568 https://www.encodeproject.org/files/ENCFF226IKV/@@download/ENCFF226IKV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/c5c8cb95-2942-431f-ac0d-203df9e1fa7f/ENCFF226IKV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF347UNM fastq fastq reads ENCSR737ZKM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54925/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN32-human', 'label': 'ZSCAN32', '@id': '/targets/ZSCAN32-human/', 'title': 'ZSCAN32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b7418fe-36a2-440a-be96-eba3cfa1f612', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF226IKV/ 2627736723 Michael Snyder, Stanford aaa2788b534a74f3e9bbfb79e5985c2d https://www.encodeproject.org/files/ENCFF347UNM/@@download/ENCFF347UNM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/44cdabe2-6799-4637-83ca-6cdccc50a023/ENCFF347UNM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF365LVH bam bam alignments GRCh38 ENCSR737ZKM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54925/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN32-human', 'label': 'ZSCAN32', '@id': '/targets/ZSCAN32-human/', 'title': 'ZSCAN32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b7418fe-36a2-440a-be96-eba3cfa1f612', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF226IKV/, /files/ENCFF347UNM/ 3086041091 ENCODE Processing Pipeline 468f3703be71228e9a6e3b79fe66860a https://www.encodeproject.org/files/ENCFF365LVH/@@download/ENCFF365LVH.bam released s3://encode-public/2020/04/21/9d4aaaa4-75dc-4d6a-a0a2-0d8ec9b47ac6/ENCFF365LVH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF460XOL bam bam unfiltered alignments GRCh38 ENCSR737ZKM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54925/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN32-human', 'label': 'ZSCAN32', '@id': '/targets/ZSCAN32-human/', 'title': 'ZSCAN32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b7418fe-36a2-440a-be96-eba3cfa1f612', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF226IKV/, /files/ENCFF347UNM/ 4470760771 ENCODE Processing Pipeline 06b36db48017e700ba5f7a273360de15 https://www.encodeproject.org/files/ENCFF460XOL/@@download/ENCFF460XOL.bam released s3://encode-public/2020/04/21/2d977125-f38e-4f5f-94be-f1ce641c7c21/ENCFF460XOL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF856FYM fastq fastq reads ENCSR172OXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF596TVV/ 3368141602 Michael Snyder, Stanford 572737a5520d62099abbb631c83eb764 SRA:SRR14106130 https://www.encodeproject.org/files/ENCFF856FYM/@@download/ENCFF856FYM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/24/0ace1faf-7ef6-4161-8123-072e3d9a2340/ENCFF856FYM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF596TVV fastq fastq reads ENCSR172OXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF856FYM/ 3584510485 Michael Snyder, Stanford 01ef7fb191156d8aef3b10d1c63f620c SRA:SRR14106130 https://www.encodeproject.org/files/ENCFF596TVV/@@download/ENCFF596TVV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/24/496509c1-9833-4a92-a1d7-2dfe681e7b9a/ENCFF596TVV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF765JCJ bam bam unfiltered alignments GRCh38 ENCSR172OXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF856FYM/, /files/ENCFF596TVV/ 6321560626 ENCODE Processing Pipeline 8e07d0a0abd598cab051ec31e8a4fe27 https://www.encodeproject.org/files/ENCFF765JCJ/@@download/ENCFF765JCJ.bam released s3://encode-public/2020/05/11/0d5ce971-1d15-4b08-8240-a6ce84408e6e/ENCFF765JCJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF130QXG bam bam alignments GRCh38 ENCSR172OXO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF856FYM/, /files/ENCFF596TVV/ 4641964832 ENCODE Processing Pipeline 3d6ef6f9e63303a54e648e0fd2cd5420 https://www.encodeproject.org/files/ENCFF130QXG/@@download/ENCFF130QXG.bam released s3://encode-public/2020/05/12/0a6c9c64-6100-4791-a367-d9e81163cc4b/ENCFF130QXG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF275NDB bam bam unfiltered alignments hg19 ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF212LBE/, /files/ENCFF807MUK/, /files/ENCFF861SAD/ 1431525370 ENCODE Processing Pipeline 2bfec96bfcd0cb1cdbd5879c24ff1e05 https://www.encodeproject.org/files/ENCFF275NDB/@@download/ENCFF275NDB.bam released s3://encode-public/2018/02/22/0664ff2b-b95d-45cf-b9e4-2e90188f510a/ENCFF275NDB.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF212LBE fastq fastq reads ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 575852148 Kevin White, UChicago 5ddd1c5bc5a80ecc1b19254afe075eda SRA:SRR6212723 https://www.encodeproject.org/files/ENCFF212LBE/@@download/ENCFF212LBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF861SAD/ released s3://encode-public/2016/03/14/849b339d-d4c5-4099-b911-6c5b1162903e/ENCFF212LBE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF861SAD fastq fastq reads ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 738915748 Kevin White, UChicago 281d8330dfb57f6f5bacc2bd0c4c5881 SRA:SRR6212724 https://www.encodeproject.org/files/ENCFF861SAD/@@download/ENCFF861SAD.fastq.gz Illumina HiSeq 2500 /files/ENCFF212LBE/ released s3://encode-public/2016/03/26/e82f59c7-28eb-4f02-9a26-6e45dc4ec16e/ENCFF861SAD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF122RZR bam bam alignments hg19 ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF212LBE/, /files/ENCFF807MUK/, /files/ENCFF861SAD/ 1114408942 ENCODE Processing Pipeline b39c791ef0245bbbe004139f50ed86e2 https://www.encodeproject.org/files/ENCFF122RZR/@@download/ENCFF122RZR.bam released s3://encode-public/2016/04/23/04d898bf-1a5e-4381-880c-612030fbe02e/ENCFF122RZR.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF552MZR bam bam unfiltered alignments GRCh38 ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF212LBE/, /files/ENCFF643CGH/, /files/ENCFF861SAD/ 1436526789 ENCODE Processing Pipeline c01a7bd883e30fbb637567799b5a01af https://www.encodeproject.org/files/ENCFF552MZR/@@download/ENCFF552MZR.bam released s3://encode-public/2016/05/06/40886ebc-bfc7-435d-a4b7-1f768c55a70c/ENCFF552MZR.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF299GMC bam bam alignments GRCh38 ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF212LBE/, /files/ENCFF643CGH/, /files/ENCFF861SAD/ 1113843810 ENCODE Processing Pipeline b1decb09289d0f21023159cce3889c62 https://www.encodeproject.org/files/ENCFF299GMC/@@download/ENCFF299GMC.bam released s3://encode-public/2016/05/06/2fd6dc40-9277-4e11-9fd9-50036850bae4/ENCFF299GMC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF455OQQ bam bam alignments GRCh38 ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF212LBE/, /files/ENCFF110MCL/, /files/ENCFF861SAD/ 1176909385 ENCODE Processing Pipeline e5fe34db8c69a397b4a03647afd999dd https://www.encodeproject.org/files/ENCFF455OQQ/@@download/ENCFF455OQQ.bam released s3://encode-public/2020/10/27/7b6f4a4e-1904-412c-917b-a9b5fba87c8e/ENCFF455OQQ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF860VIF bam bam unfiltered alignments GRCh38 ENCSR212RMP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-717'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201514/'], '@type': ['Target', 'Item'], 'name': 'ZNF584-human', 'label': 'ZNF584', '@id': '/targets/ZNF584-human/', 'title': 'ZNF584 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a12e0fe6-a31b-4f66-a07b-0d30d94e50e8', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF212LBE/, /files/ENCFF110MCL/, /files/ENCFF861SAD/ 1439791339 ENCODE Processing Pipeline cc931218e7bc07718a2b5dbd2581f1ca https://www.encodeproject.org/files/ENCFF860VIF/@@download/ENCFF860VIF.bam released s3://encode-public/2020/10/27/469790d0-0de0-4863-8eb5-ab9198890e85/ENCFF860VIF.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF866EMZ fastq fastq reads ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 single-ended 1468022306 Xiang-Dong Fu, UCSD 2246750eb0bd7358008b69e75006b6db SRA:SRR14106100 https://www.encodeproject.org/files/ENCFF866EMZ/@@download/ENCFF866EMZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/d2cd9677-6734-4921-9da7-d1b5613d532a/ENCFF866EMZ.fastq.gz low read length ENCFF306JCM fastq fastq reads ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 single-ended 1493867918 Xiang-Dong Fu, UCSD bfa03db7ff2a16f21afdbd9a1b4326a3 SRA:SRR14106101 https://www.encodeproject.org/files/ENCFF306JCM/@@download/ENCFF306JCM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/bb064e86-a023-4ae1-a408-2eda2b31c294/ENCFF306JCM.fastq.gz low read length ENCFF947PYF bam bam alignments hg19 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF866EMZ/ 1473949827 ENCODE Processing Pipeline 140e0e53b2baa9d043954a31a294951c https://www.encodeproject.org/files/ENCFF947PYF/@@download/ENCFF947PYF.bam released s3://encode-public/2015/11/12/1ab4e9cf-4f93-48c1-9a22-79e44327aa54/ENCFF947PYF.bam ENCODE3 hg19 archived low read length ENCFF021EOQ bam bam alignments hg19 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF306JCM/ 1519292925 ENCODE Processing Pipeline 31d73ff34df050ee1f787601c9429c1f https://www.encodeproject.org/files/ENCFF021EOQ/@@download/ENCFF021EOQ.bam released s3://encode-public/2015/11/12/a9688e6d-6d17-4ded-b063-389a8a4b2481/ENCFF021EOQ.bam ENCODE3 hg19 archived low read length ENCFF603BUP bam bam unfiltered alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF866EMZ/ 1967346007 ENCODE Processing Pipeline 45bc089fc31b4716b216807b38bc087b https://www.encodeproject.org/files/ENCFF603BUP/@@download/ENCFF603BUP.bam released s3://encode-public/2016/05/06/7fb330d7-2340-4375-b79f-cfd1827d62f3/ENCFF603BUP.bam ENCODE3 GRCh38 archived low read length ENCFF586OAQ bam bam unfiltered alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF306JCM/ 2015514641 ENCODE Processing Pipeline 2829a223235f3fbde25294fe5de329fa https://www.encodeproject.org/files/ENCFF586OAQ/@@download/ENCFF586OAQ.bam released s3://encode-public/2016/05/06/88fae230-f645-420a-98e8-d12de31f1da8/ENCFF586OAQ.bam ENCODE3 GRCh38 archived low read length ENCFF875UWF bam bam alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF306JCM/ 1517965024 ENCODE Processing Pipeline e886fdbeba311dc43f75b350dc8bb648 https://www.encodeproject.org/files/ENCFF875UWF/@@download/ENCFF875UWF.bam released s3://encode-public/2016/05/06/c9864883-1999-4587-88dc-8577bd77dc1b/ENCFF875UWF.bam ENCODE3 GRCh38 archived low read length ENCFF808MKF bam bam alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF866EMZ/ 1472688186 ENCODE Processing Pipeline 42cc2fe1d15a606a41d59d7fa06a7abb https://www.encodeproject.org/files/ENCFF808MKF/@@download/ENCFF808MKF.bam released s3://encode-public/2016/05/06/7c8acb50-161a-43f7-a9ec-276d3fcf975a/ENCFF808MKF.bam ENCODE3 GRCh38 archived low read length ENCFF664HJT bam bam unfiltered alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF866EMZ/, /files/ENCFF110MCL/ 1952319563 ENCODE Processing Pipeline 1588ee660f8565496efc2d23f214677b https://www.encodeproject.org/files/ENCFF664HJT/@@download/ENCFF664HJT.bam released s3://encode-public/2020/10/27/d596ddf7-c5dc-4ed2-9381-0508c8765035/ENCFF664HJT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF261WGB bam bam alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF866EMZ/, /files/ENCFF110MCL/ 1527076076 ENCODE Processing Pipeline 190c2f785f30e9ccf44388f395e33b73 https://www.encodeproject.org/files/ENCFF261WGB/@@download/ENCFF261WGB.bam released s3://encode-public/2020/10/27/f5a95503-b19f-4156-8eac-0a03403a7d01/ENCFF261WGB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF944CND bam bam unfiltered alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF306JCM/ 1994075896 ENCODE Processing Pipeline 7f711300965acf7c2b481ba2645d047c https://www.encodeproject.org/files/ENCFF944CND/@@download/ENCFF944CND.bam released s3://encode-public/2020/10/27/93a8dab7-b08e-4cc6-a07b-a44a93cd45cf/ENCFF944CND.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF138GLM bam bam unfiltered alignments hg19 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF306JCM/ 2010619216 ENCODE Processing Pipeline 674c4243f3d21c90a062cff024afdf9e https://www.encodeproject.org/files/ENCFF138GLM/@@download/ENCFF138GLM.bam released s3://encode-public/2018/01/17/a72d4064-d955-404c-9931-b9e72ee26d30/ENCFF138GLM.bam ENCODE3 hg19 archived low read length ENCFF146MZY bam bam unfiltered alignments hg19 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF866EMZ/ 1961839251 ENCODE Processing Pipeline efae3302845f94be4618efb04155df08 https://www.encodeproject.org/files/ENCFF146MZY/@@download/ENCFF146MZY.bam released s3://encode-public/2018/01/17/707477fc-a591-4c12-abf3-decb10a68e9f/ENCFF146MZY.bam ENCODE3 hg19 archived low read length ENCFF207SPC bam bam alignments GRCh38 ENCSR550ZLZ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF306JCM/ 1594156376 ENCODE Processing Pipeline 760a94b5a166a0a790089957f5801d6e https://www.encodeproject.org/files/ENCFF207SPC/@@download/ENCFF207SPC.bam released s3://encode-public/2020/10/27/8e9ae5da-ee5a-43c0-9b3b-9e64d6018b09/ENCFF207SPC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF692GXY bam bam alignments dm3 ENCSR615ZGI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF901RZC/ 2705256918 Kevin White, UChicago 07c4e0106a9603a8e5752e8ee99772c5 https://www.encodeproject.org/files/ENCFF692GXY/@@download/ENCFF692GXY.bam released s3://encode-public/2017/06/20/18b5cb00-7fa8-46df-9186-37b11ce31159/ENCFF692GXY.bam Lab custom dm3 archived ENCFF732VEJ bam bam alignments dm6 ENCSR615ZGI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF901RZC/ 2696737807 Kevin White, UChicago c5292c877cc2373ca0e839455313e0af https://www.encodeproject.org/files/ENCFF732VEJ/@@download/ENCFF732VEJ.bam released s3://encode-public/2017/06/28/e0d2ca0e-855b-4d1f-9e45-30bd6ed581d3/ENCFF732VEJ.bam Lab custom dm6 released ENCFF584HGQ bigWig bigWig signal of unique reads dm3 ENCSR615ZGI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF692GXY/ 15964726 Kevin White, UChicago 222dcb280b5a6ee609a940d8253d7ac2 https://www.encodeproject.org/files/ENCFF584HGQ/@@download/ENCFF584HGQ.bigWig released s3://encode-public/2017/06/29/b193db8c-6d28-4178-b635-6c5f7f54505a/ENCFF584HGQ.bigWig Lab custom dm3 archived ENCFF858SFC bigWig bigWig read-depth normalized signal dm3 ENCSR615ZGI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF692GXY/ 15947125 Kevin White, UChicago 0f2b3501c894d54908f8ed7871e4ec86 https://www.encodeproject.org/files/ENCFF858SFC/@@download/ENCFF858SFC.bigWig released s3://encode-public/2017/06/29/c8c2edac-9393-477d-8a5c-ba3652b960ea/ENCFF858SFC.bigWig Lab custom dm3 archived ENCFF178CZL bigWig bigWig read-depth normalized signal dm6 ENCSR615ZGI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF732VEJ/ 17899120 Kevin White, UChicago 9a17c5046a53515dca8c820c1e1d5b33 https://www.encodeproject.org/files/ENCFF178CZL/@@download/ENCFF178CZL.bigWig released s3://encode-public/2017/06/30/632e3b13-b286-4ad9-9551-2ae0832eca5a/ENCFF178CZL.bigWig Lab custom dm6 released ENCFF959GDV bigWig bigWig signal of unique reads dm6 ENCSR615ZGI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF732VEJ/ 17938996 Kevin White, UChicago 4173fc5b6ed59203416812e3127a1246 https://www.encodeproject.org/files/ENCFF959GDV/@@download/ENCFF959GDV.bigWig released s3://encode-public/2017/06/30/f9735825-4b3b-404d-a24c-0c130762dea3/ENCFF959GDV.bigWig Lab custom dm6 released ENCFF901RZC fastq fastq reads ENCSR615ZGI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 2185476710 Kevin White, UChicago e7ae71061f47cb8187a69e6fee7d7e99 https://www.encodeproject.org/files/ENCFF901RZC/@@download/ENCFF901RZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/9bc84ccc-857c-4ef0-9597-2954235c38fd/ENCFF901RZC.fastq.gz ENCFF611ALK fastq fastq reads ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 168785896 Michael Snyder, Stanford 4895b6806068f0096c7e5fc55c0c8ec0 https://www.encodeproject.org/files/ENCFF611ALK/@@download/ENCFF611ALK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1111e9ed-cf6e-459b-9691-d5ebd31f0275/ENCFF611ALK.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF941RKT fastq fastq reads ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 280529597 Michael Snyder, Stanford 4625663fc1aed7343a17160ff1c956bc https://www.encodeproject.org/files/ENCFF941RKT/@@download/ENCFF941RKT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e6e97b7f-3a12-4416-899d-f5328cb7559e/ENCFF941RKT.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF638YGH bam bam alignments ce10 ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF941RKT/, /files/ENCFF611ALK/, /files/ENCFF987UMF/ 583104045 Kevin White, UChicago d150b7e7c0f424343e067d39a1b01bd1 https://www.encodeproject.org/files/ENCFF638YGH/@@download/ENCFF638YGH.bam released s3://encode-public/2016/10/18/3cd66d2c-e818-4846-8276-bf42ee426103/ENCFF638YGH.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF470JZH bam bam alignments ce11 ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF941RKT/, /files/ENCFF611ALK/, /files/ENCFF586MOL/ 583709585 Kevin White, UChicago a72cb1b5c961389429e0dbd95a4fbccf https://www.encodeproject.org/files/ENCFF470JZH/@@download/ENCFF470JZH.bam released s3://encode-public/2016/10/18/2898e98b-09df-46bc-a157-20aa12eb3583/ENCFF470JZH.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF846OAT bigWig bigWig read-depth normalized signal ce10 ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF638YGH/ 10020992 Kevin White, UChicago 07a2f47fb0aa2477c6d88b9d5e17e892 https://www.encodeproject.org/files/ENCFF846OAT/@@download/ENCFF846OAT.bigWig released s3://encode-public/2016/10/20/c6660355-1023-4f0e-8809-f79290c7ba29/ENCFF846OAT.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF038NAL bigWig bigWig signal of unique reads ce10 ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF638YGH/ 9994372 Kevin White, UChicago c614ce4f090608ba017e3273537cdc4e https://www.encodeproject.org/files/ENCFF038NAL/@@download/ENCFF038NAL.bigWig released s3://encode-public/2016/10/20/41a9d267-3c0c-499b-9792-0b872b957d6a/ENCFF038NAL.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF625IAK bigWig bigWig signal of unique reads ce11 ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF470JZH/ 9993508 Kevin White, UChicago dbd247ff68f3a1450fc6929bcbffa743 https://www.encodeproject.org/files/ENCFF625IAK/@@download/ENCFF625IAK.bigWig released s3://encode-public/2016/10/20/cfa2946e-7d15-4186-af51-7062d4677d1e/ENCFF625IAK.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF569LQK bigWig bigWig read-depth normalized signal ce11 ENCSR860DXK Control ChIP-seq /worm-donors/ENCDO110WTC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF470JZH/ 10026169 Kevin White, UChicago 4e0904e7149f72d93b218a5f98365bf8 https://www.encodeproject.org/files/ENCFF569LQK/@@download/ENCFF569LQK.bigWig released s3://encode-public/2016/10/20/21e3ddfa-282a-455c-b183-9fac90815b45/ENCFF569LQK.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF199BXN fastq fastq reads ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 219753387 Michael Snyder, Stanford 533703c3f62a1d8541d888fe0a459aa5 https://www.encodeproject.org/files/ENCFF199BXN/@@download/ENCFF199BXN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/160593c3-0715-4862-a928-1799b5b78e58/ENCFF199BXN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF693QTM fastq fastq reads ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 193414631 Michael Snyder, Stanford 465585e14eb7cd3f977dacc7743c4f34 https://www.encodeproject.org/files/ENCFF693QTM/@@download/ENCFF693QTM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a779657a-15f0-4812-b5ef-937ed443e170/ENCFF693QTM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF461BFZ bam bam alignments ce10 ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF199BXN/, /files/ENCFF693QTM/, /files/ENCFF987UMF/ 544696030 Kevin White, UChicago 50ccd0b1735db4d59abc4cc7a88434e3 https://www.encodeproject.org/files/ENCFF461BFZ/@@download/ENCFF461BFZ.bam released s3://encode-public/2016/10/18/b9d9fe11-d426-40d0-9c96-eb39a8a550b0/ENCFF461BFZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF055JCH bam bam alignments ce11 ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF199BXN/, /files/ENCFF693QTM/, /files/ENCFF586MOL/ 545283127 Kevin White, UChicago d42c2fb17ea1f633e09b947b6f8a9987 https://www.encodeproject.org/files/ENCFF055JCH/@@download/ENCFF055JCH.bam released s3://encode-public/2016/10/19/14f69e51-dad4-4065-b77b-3de0ada77fe4/ENCFF055JCH.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF715DEP bigWig bigWig read-depth normalized signal ce10 ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF461BFZ/ 10053141 Kevin White, UChicago 12f9e26a6eb3f60e929650995f7aee1e https://www.encodeproject.org/files/ENCFF715DEP/@@download/ENCFF715DEP.bigWig released s3://encode-public/2016/10/20/6ba6958f-7f08-4019-9ec1-4e77279a11ff/ENCFF715DEP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF794MVN bigWig bigWig signal of unique reads ce10 ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF461BFZ/ 9984832 Kevin White, UChicago 96d64415c0266a1ad340528ef7547013 https://www.encodeproject.org/files/ENCFF794MVN/@@download/ENCFF794MVN.bigWig released s3://encode-public/2016/10/20/7469c1f9-2039-4361-95c1-0a06f8517f49/ENCFF794MVN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF888LLW bigWig bigWig read-depth normalized signal ce11 ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF055JCH/ 10051137 Kevin White, UChicago e6802a25c1419a74e219f35d855f02b2 https://www.encodeproject.org/files/ENCFF888LLW/@@download/ENCFF888LLW.bigWig released s3://encode-public/2016/10/21/872d5b52-7a5e-40e9-a7d7-ca4f6df3c04e/ENCFF888LLW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF408NKZ bigWig bigWig signal of unique reads ce11 ENCSR911MDB Control ChIP-seq /worm-donors/ENCDO581QYS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF055JCH/ 9983633 Kevin White, UChicago ebe25bdbd6878c35b7633a5a975f7693 https://www.encodeproject.org/files/ENCFF408NKZ/@@download/ENCFF408NKZ.bigWig released s3://encode-public/2016/10/21/ea11b879-b24e-4b7b-8666-646bfc0e6f25/ENCFF408NKZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF392FAC fastq fastq reads ENCSR533JIB Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'adb8d336-00d7-4fd1-9293-13f93a065fcf', 'schema_version': '14', 'name': 'CREB1-human', '@id': '/targets/CREB1-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF300KII/ 3070940351 Michael Snyder, Stanford 0624c617aa23098ea55d9a6871b18891 SRA:SRR14105556 https://www.encodeproject.org/files/ENCFF392FAC/@@download/ENCFF392FAC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/3959668f-cff4-490f-8c58-d42ef7854fc5/ENCFF392FAC.fastq.gz mild to moderate bottlenecking ENCFF300KII fastq fastq reads ENCSR533JIB Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'adb8d336-00d7-4fd1-9293-13f93a065fcf', 'schema_version': '14', 'name': 'CREB1-human', '@id': '/targets/CREB1-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF392FAC/ 2830413904 Michael Snyder, Stanford 37825a055366e6314d0680f5222a9c0f SRA:SRR14105556 https://www.encodeproject.org/files/ENCFF300KII/@@download/ENCFF300KII.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/8dbf4619-9df3-4852-b733-bf94e1c3b993/ENCFF300KII.fastq.gz mild to moderate bottlenecking ENCFF440BRY bam bam unfiltered alignments GRCh38 ENCSR533JIB Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'adb8d336-00d7-4fd1-9293-13f93a065fcf', 'schema_version': '14', 'name': 'CREB1-human', '@id': '/targets/CREB1-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF300KII/, /files/ENCFF392FAC/ 5686206161 ENCODE Processing Pipeline 662b0bb203a0ade23e959e8611cf099e https://www.encodeproject.org/files/ENCFF440BRY/@@download/ENCFF440BRY.bam released s3://encode-public/2020/04/21/d40f8e37-e271-49be-a74c-a9cab893e013/ENCFF440BRY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF955PBV bam bam alignments GRCh38 ENCSR533JIB Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CREB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1385/'], '@type': ['Target', 'Item'], 'label': 'CREB1', 'title': 'CREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'adb8d336-00d7-4fd1-9293-13f93a065fcf', 'schema_version': '14', 'name': 'CREB1-human', '@id': '/targets/CREB1-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF300KII/, /files/ENCFF392FAC/ 3737993430 ENCODE Processing Pipeline c60a632894b380134b2495cf7b4b70c3 https://www.encodeproject.org/files/ENCFF955PBV/@@download/ENCFF955PBV.bam released s3://encode-public/2020/04/21/8708195b-e955-4659-adba-aa8b1a20ee4e/ENCFF955PBV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF327IAE bam bam redacted unfiltered alignments GRCh38 ENCSR749PIF Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF850AMQ/, /files/ENCFF038DUA/ 543057068 ENCODE Processing Pipeline 363541c247f15d45c89451e1a6ec99fd https://www.encodeproject.org/files/ENCFF327IAE/@@download/ENCFF327IAE.bam released s3://encode-public/2017/11/09/1d7c068d-281a-422a-9a87-6f2f746c9e2f/ENCFF327IAE.bam ENCODE3 GRCh38 archived ENCFF077AZC bam bam redacted alignments GRCh38 ENCSR749PIF Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF850AMQ/, /files/ENCFF038DUA/ 319264276 ENCODE Processing Pipeline 4198cf037a385e33985b7b4160ebca6b https://www.encodeproject.org/files/ENCFF077AZC/@@download/ENCFF077AZC.bam released s3://encode-public/2017/11/09/81cf6b0e-3ad2-4279-b949-0672a8c60a47/ENCFF077AZC.bam ENCODE3 GRCh38 archived ENCFF246EME bam bam redacted alignments hg19 ENCSR749PIF Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF850AMQ/, /files/ENCFF038DUA/ 318844631 ENCODE Processing Pipeline 89f052063e8decd61a4892e7887ae591 https://www.encodeproject.org/files/ENCFF246EME/@@download/ENCFF246EME.bam released s3://encode-public/2018/01/20/cd2ce1d1-1b73-499b-b117-41483d18292e/ENCFF246EME.bam ENCODE3 hg19 archived ENCFF824PNG bam bam redacted unfiltered alignments hg19 ENCSR749PIF Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF850AMQ/, /files/ENCFF038DUA/ 536053825 ENCODE Processing Pipeline 3128f15c7d0dc9879fe92f886576a2c3 https://www.encodeproject.org/files/ENCFF824PNG/@@download/ENCFF824PNG.bam released s3://encode-public/2018/01/20/f96787f9-df9c-47b5-aaaa-81d0b5cf99aa/ENCFF824PNG.bam ENCODE3 hg19 archived ENCFF757QSJ bam bam redacted alignments GRCh38 ENCSR749PIF Control ChIP-seq /human-donors/ENCDO651ROT/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF998MBH/, /files/ENCFF110MCL/, /files/ENCFF986TGP/ 1947073909 ENCODE Processing Pipeline 1a41824ae144af83c8666f53ea3bf920 https://www.encodeproject.org/files/ENCFF757QSJ/@@download/ENCFF757QSJ.bam released s3://encode-public/2021/01/28/4e5b859a-31e9-4231-a5e6-e8259953fb63/ENCFF757QSJ.bam ENCODE4 v1.7.0 GRCh38 released ENCFF271YKO fastq fastq reads ENCSR298RRI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51523/'], '@type': ['Target', 'Item'], 'name': 'CXXC5-human', 'label': 'CXXC5', '@id': '/targets/CXXC5-human/', 'title': 'CXXC5 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '10e4eef4-f62a-4eab-a030-e15b2b7f4f4c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF749XNM/ 2700860718 Michael Snyder, Stanford fbef088fc5dc37526df15be191f55d4f SRA:SRR14104302 https://www.encodeproject.org/files/ENCFF271YKO/@@download/ENCFF271YKO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/1a5904a6-84aa-40a6-87a4-d842bb561540/ENCFF271YKO.fastq.gz ENCFF749XNM fastq fastq reads ENCSR298RRI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51523/'], '@type': ['Target', 'Item'], 'name': 'CXXC5-human', 'label': 'CXXC5', '@id': '/targets/CXXC5-human/', 'title': 'CXXC5 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '10e4eef4-f62a-4eab-a030-e15b2b7f4f4c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF271YKO/ 2373069359 Michael Snyder, Stanford ca62291c431ef55d74f947b61db6c71d SRA:SRR14104302 https://www.encodeproject.org/files/ENCFF749XNM/@@download/ENCFF749XNM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/9195f307-415b-4fd3-9158-a00d83b58d06/ENCFF749XNM.fastq.gz ENCFF269NXE bam bam unfiltered alignments GRCh38 ENCSR298RRI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51523/'], '@type': ['Target', 'Item'], 'name': 'CXXC5-human', 'label': 'CXXC5', '@id': '/targets/CXXC5-human/', 'title': 'CXXC5 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '10e4eef4-f62a-4eab-a030-e15b2b7f4f4c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF749XNM/, /files/ENCFF271YKO/ 5064253313 ENCODE Processing Pipeline d4fc9651b1e73558091f80a342d81e96 https://www.encodeproject.org/files/ENCFF269NXE/@@download/ENCFF269NXE.bam released s3://encode-public/2020/04/21/9766a7c7-2875-441c-840f-0a3f5fdcea97/ENCFF269NXE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF866KSG bam bam alignments GRCh38 ENCSR298RRI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51523/'], '@type': ['Target', 'Item'], 'name': 'CXXC5-human', 'label': 'CXXC5', '@id': '/targets/CXXC5-human/', 'title': 'CXXC5 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '10e4eef4-f62a-4eab-a030-e15b2b7f4f4c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF749XNM/, /files/ENCFF271YKO/ 4136052889 ENCODE Processing Pipeline af9834c3cc8a1e7273189d88963c8706 https://www.encodeproject.org/files/ENCFF866KSG/@@download/ENCFF866KSG.bam released s3://encode-public/2020/04/21/6bdecf05-ef11-4144-8673-931a4a0ce7b4/ENCFF866KSG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF484SAZ bam bam alignments GRCh38 ENCSR759IVF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF800NGP/, /files/ENCFF858CHH/ 3003936494 ENCODE Processing Pipeline 18725ecc8f2f08aa87732dc6b97fc30e https://www.encodeproject.org/files/ENCFF484SAZ/@@download/ENCFF484SAZ.bam released s3://encode-public/2020/10/14/5e7f7ebb-8eed-46ef-996f-fa83c407915c/ENCFF484SAZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF687DRV bam bam unfiltered alignments GRCh38 ENCSR759IVF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF800NGP/, /files/ENCFF858CHH/ 4584530520 ENCODE Processing Pipeline 70b1d976cc93bb26a0eafe7e9ce95fdc https://www.encodeproject.org/files/ENCFF687DRV/@@download/ENCFF687DRV.bam released s3://encode-public/2020/10/14/b7d76f2d-5ab8-4628-bc45-43908b875092/ENCFF687DRV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF858CHH fastq fastq reads ENCSR759IVF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF800NGP/ 2657144562 Michael Snyder, Stanford dd69039fec3baafdfd66b777d40062ef SRA:SRR14638117 https://www.encodeproject.org/files/ENCFF858CHH/@@download/ENCFF858CHH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/10/07/18761dab-91fa-4e58-bb60-87c21af21763/ENCFF858CHH.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF800NGP fastq fastq reads ENCSR759IVF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF858CHH/ 2493698659 Michael Snyder, Stanford 230f9f7fbe50d7a8521e70d46aa4e97f SRA:SRR14638117 https://www.encodeproject.org/files/ENCFF800NGP/@@download/ENCFF800NGP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/10/07/0aac0ef7-7b87-4ffb-be67-c08aed366ded/ENCFF800NGP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF496ZEY fastq fastq reads ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 59563930 Michael Snyder, Stanford 602229c8a7201fce8bae518d24065efc https://www.encodeproject.org/files/ENCFF496ZEY/@@download/ENCFF496ZEY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/18b1e7f1-dc36-4147-a2bc-f0715d61d2d8/ENCFF496ZEY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF878UOP fastq fastq reads ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 32680145 Michael Snyder, Stanford 95b0a35592e3dc7877ea40694c97a0c5 https://www.encodeproject.org/files/ENCFF878UOP/@@download/ENCFF878UOP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8c14dcfc-4b9c-4ff1-ae38-5570b7d2d3e3/ENCFF878UOP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF062LBY fastq fastq reads ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 136656661 Michael Snyder, Stanford bf085b2c941d5028c1c5a0b30bc8c324 https://www.encodeproject.org/files/ENCFF062LBY/@@download/ENCFF062LBY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e2930153-fe5a-4ad2-9ebe-156829db982c/ENCFF062LBY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF412YRE bam bam alignments ce10 ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF496ZEY/, /files/ENCFF878UOP/, /files/ENCFF062LBY/, /files/ENCFF987UMF/ 386084893 Kevin White, UChicago 88c4846c15069a4ae790440dc22723ea https://www.encodeproject.org/files/ENCFF412YRE/@@download/ENCFF412YRE.bam released s3://encode-public/2017/04/27/7d8e21b2-9a5f-4286-8d38-0061c4af83a2/ENCFF412YRE.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF599WMP bam bam alignments ce11 ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF496ZEY/, /files/ENCFF878UOP/, /files/ENCFF062LBY/, /files/ENCFF586MOL/ 386491017 Kevin White, UChicago 6cf26389937d58461b90f87c25972b49 https://www.encodeproject.org/files/ENCFF599WMP/@@download/ENCFF599WMP.bam released s3://encode-public/2017/04/27/88e81184-a4ec-4295-a823-3bfd0c9d91a8/ENCFF599WMP.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF161OPU bigWig bigWig signal of unique reads ce10 ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF412YRE/ 9995582 Kevin White, UChicago a416b2c5804788a639bacfde2741b26e https://www.encodeproject.org/files/ENCFF161OPU/@@download/ENCFF161OPU.bigWig released s3://encode-public/2017/04/29/b03690a2-c82a-4011-8a45-3f9067cc6669/ENCFF161OPU.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF621PSH bigWig bigWig read-depth normalized signal ce10 ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF412YRE/ 9942199 Kevin White, UChicago 3c1b4b5f97daba2cedb9fb8474ceaf64 https://www.encodeproject.org/files/ENCFF621PSH/@@download/ENCFF621PSH.bigWig released s3://encode-public/2017/04/29/0fbb7621-1cf8-4cac-85ff-9b09fe60dfae/ENCFF621PSH.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF833MHQ bigWig bigWig signal of unique reads ce11 ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF599WMP/ 9992711 Kevin White, UChicago 8aed0452b6e59d29ffada8733d7a174a https://www.encodeproject.org/files/ENCFF833MHQ/@@download/ENCFF833MHQ.bigWig released s3://encode-public/2017/04/29/9c23608f-ddd2-417d-9820-60a3e7a6c973/ENCFF833MHQ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF640YKN bigWig bigWig read-depth normalized signal ce11 ENCSR259OSS Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF599WMP/ 9940138 Kevin White, UChicago bbeabc23f1e80056470d006ee0aaca6d https://www.encodeproject.org/files/ENCFF640YKN/@@download/ENCFF640YKN.bigWig released s3://encode-public/2017/04/29/75139a45-ebf1-442e-84c5-8894cab330d7/ENCFF640YKN.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF227ENV fastq fastq reads ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 228638341 Michael Snyder, Stanford 78be5da36d3c8b85f32e5fcfc3b7760e https://www.encodeproject.org/files/ENCFF227ENV/@@download/ENCFF227ENV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/dae101f4-a593-4ae0-ba91-bd0c135dfcf7/ENCFF227ENV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF819HSO fastq fastq reads ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 208740237 Michael Snyder, Stanford 785619a36fc4ef5516a6766460358f1e https://www.encodeproject.org/files/ENCFF819HSO/@@download/ENCFF819HSO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/93c459c9-6e47-4e53-9f23-253f2ec9f707/ENCFF819HSO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF775FCN bam bam alignments ce10 ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF227ENV/, /files/ENCFF819HSO/, /files/ENCFF987UMF/ 562776800 Kevin White, UChicago c7ee75d2211da0b8592dd7fc5cc6e0e6 https://www.encodeproject.org/files/ENCFF775FCN/@@download/ENCFF775FCN.bam released s3://encode-public/2016/10/18/28d01467-e134-4649-aacf-cdd9d465d791/ENCFF775FCN.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF571VXI bam bam alignments ce11 ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF227ENV/, /files/ENCFF819HSO/, /files/ENCFF586MOL/ 563379430 Kevin White, UChicago 2d50e52d4e40e44d5bad84c998b3cfab https://www.encodeproject.org/files/ENCFF571VXI/@@download/ENCFF571VXI.bam released s3://encode-public/2016/10/19/42257711-e64b-4ea5-8450-c42dbeac70cb/ENCFF571VXI.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF549PDO bigWig bigWig signal of unique reads ce10 ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF775FCN/ 10007987 Kevin White, UChicago 9b0a35f78ffe46da3ac2a246ebad12b6 https://www.encodeproject.org/files/ENCFF549PDO/@@download/ENCFF549PDO.bigWig released s3://encode-public/2016/10/20/7ae74ecd-1d92-4f14-9011-ed804e95b319/ENCFF549PDO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF013GMY bigWig bigWig read-depth normalized signal ce10 ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF775FCN/ 10059234 Kevin White, UChicago bfed7b885c77ccecd0d2c2072bc60e0a https://www.encodeproject.org/files/ENCFF013GMY/@@download/ENCFF013GMY.bigWig released s3://encode-public/2016/10/20/bbcd0d5c-4fc4-4734-9455-89aa5ff87a6e/ENCFF013GMY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF588XXA bigWig bigWig signal of unique reads ce11 ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF571VXI/ 10004123 Kevin White, UChicago 0a0ce63cc284fe887a88cade988d3e61 https://www.encodeproject.org/files/ENCFF588XXA/@@download/ENCFF588XXA.bigWig released s3://encode-public/2016/10/20/d388bbc9-9860-424f-8a50-ef609c9cc746/ENCFF588XXA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF776VBO bigWig bigWig read-depth normalized signal ce11 ENCSR622TPD Control ChIP-seq /worm-donors/ENCDO567TOL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181520/'], '@type': ['Target', 'Item'], 'name': 'F16B12.6-celegans', 'label': 'F16B12.6', '@id': '/targets/F16B12.6-celegans/', 'title': 'F16B12.6 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '7c08c9d4-4b71-4cb6-8984-360897295796', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF571VXI/ 10054118 Kevin White, UChicago cd42846edddf73260de79d5685c606c2 https://www.encodeproject.org/files/ENCFF776VBO/@@download/ENCFF776VBO.bigWig released s3://encode-public/2016/10/20/a2a9049e-249d-4c10-a14b-bd1cbd9a9a66/ENCFF776VBO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF562QRH fastq fastq reads ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1 1_1 27 single-ended 185878290 Kevin White, UChicago 3007a517611e34a268653d13d114657b https://www.encodeproject.org/files/ENCFF562QRH/@@download/ENCFF562QRH.fastq.gz Illumina Genome Analyzer I released s3://encode-public/2016/10/25/87f5129b-13a5-4382-ba10-8ad5430c62b3/ENCFF562QRH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF081ROX fastq fastq reads ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 2 2_1 27 single-ended 132943853 Kevin White, UChicago 9c61e89832f7915f22dac2229aa44ed1 https://www.encodeproject.org/files/ENCFF081ROX/@@download/ENCFF081ROX.fastq.gz Illumina Genome Analyzer I released s3://encode-public/2016/10/25/699e1f6a-2e4c-43ae-83b8-bea766402d66/ENCFF081ROX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF120YSW bam bam alignments ce10 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1 1_1 27 /files/ENCFF562QRH/, /files/ENCFF987UMF/ 201138106 Kevin White, UChicago 9a70d832304807b83879a8dff5858659 https://www.encodeproject.org/files/ENCFF120YSW/@@download/ENCFF120YSW.bam released s3://encode-public/2016/10/26/fbcd3bc5-d82f-4a6c-9dbe-adeea0173bef/ENCFF120YSW.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF546YFA bam bam alignments ce11 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1 1_1 27 /files/ENCFF562QRH/, /files/ENCFF586MOL/ 201386449 Kevin White, UChicago 95a979684a05c44afef671ef714a48c9 https://www.encodeproject.org/files/ENCFF546YFA/@@download/ENCFF546YFA.bam released s3://encode-public/2016/10/26/79b194f0-43f3-4bc5-a0f1-70f47cdf1434/ENCFF546YFA.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF202XOF bam bam alignments ce10 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 2 2_1 27 /files/ENCFF081ROX/, /files/ENCFF987UMF/ 146584476 Kevin White, UChicago 92b82f10c05f841b520130fb1f79dcfa https://www.encodeproject.org/files/ENCFF202XOF/@@download/ENCFF202XOF.bam released s3://encode-public/2016/10/26/e1e2c1df-bf54-473f-9e4d-c02ef26a8154/ENCFF202XOF.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF303SLV bam bam alignments ce11 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 2 2_1 27 /files/ENCFF081ROX/, /files/ENCFF586MOL/ 146767811 Kevin White, UChicago 88107846b6da374eaecff05526642191 https://www.encodeproject.org/files/ENCFF303SLV/@@download/ENCFF303SLV.bam released s3://encode-public/2016/10/26/fce22de5-3e11-4480-853e-4da994b89fb3/ENCFF303SLV.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF638FEV bigWig bigWig signal of unique reads ce10 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF120YSW/, /files/ENCFF202XOF/ 10065722 Kevin White, UChicago 8c14ef591cf793fe2726832dd2f0de19 https://www.encodeproject.org/files/ENCFF638FEV/@@download/ENCFF638FEV.bigWig released s3://encode-public/2016/10/26/2d150146-4772-4599-aa0a-e228dad5c0f6/ENCFF638FEV.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF807XQW bigWig bigWig read-depth normalized signal ce10 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF120YSW/, /files/ENCFF202XOF/ 10052429 Kevin White, UChicago 4228e5f0e3c5c8b044e6aa0f741c88f4 https://www.encodeproject.org/files/ENCFF807XQW/@@download/ENCFF807XQW.bigWig released s3://encode-public/2016/10/26/b3b532b1-1f91-45c9-8ab4-92b3fc8eb269/ENCFF807XQW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF474NLQ bigWig bigWig read-depth normalized signal ce11 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF546YFA/, /files/ENCFF303SLV/ 10049509 Kevin White, UChicago a2b1d98e7c7d9a0c83a87505b7102071 https://www.encodeproject.org/files/ENCFF474NLQ/@@download/ENCFF474NLQ.bigWig released s3://encode-public/2016/10/26/64d6ae20-1124-47fb-a13f-6c18c631ddec/ENCFF474NLQ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF467KSX bigWig bigWig signal of unique reads ce11 ENCSR240NKC Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2018-02-14 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF546YFA/, /files/ENCFF303SLV/ 10062719 Kevin White, UChicago 24e6f4530f847e160808b4d753b0f088 https://www.encodeproject.org/files/ENCFF467KSX/@@download/ENCFF467KSX.bigWig released s3://encode-public/2016/10/26/b9828fe6-1545-419d-8ce4-38771b23b374/ENCFF467KSX.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF031UUM fastq fastq reads ENCSR387OYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF945BPW/ 2985483276 Michael Snyder, Stanford 2b40344c875ddacaa647847a63fcd2b9 SRA:SRR14638484 https://www.encodeproject.org/files/ENCFF031UUM/@@download/ENCFF031UUM.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/eb018b07-0fdf-4ffc-a826-a1800006db0c/ENCFF031UUM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF945BPW fastq fastq reads ENCSR387OYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF031UUM/ 3160549256 Michael Snyder, Stanford 065664d79b8317d05f71493f2f833bbc SRA:SRR14638484 https://www.encodeproject.org/files/ENCFF945BPW/@@download/ENCFF945BPW.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/6b600c0c-dbad-40ff-8564-430944e9667f/ENCFF945BPW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF100ROR bam bam alignments GRCh38 ENCSR387OYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF945BPW/, /files/ENCFF110MCL/, /files/ENCFF031UUM/ 3483880812 ENCODE Processing Pipeline 886d2d05477475f09d7d7fa707fb033b https://www.encodeproject.org/files/ENCFF100ROR/@@download/ENCFF100ROR.bam released s3://encode-public/2021/03/18/a4b51e4d-015b-4b3b-bdc1-c72c14dd0da6/ENCFF100ROR.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF125DTK bam bam unfiltered alignments GRCh38 ENCSR387OYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF945BPW/, /files/ENCFF110MCL/, /files/ENCFF031UUM/ 4987499279 ENCODE Processing Pipeline 2dd02674b13a959d56a2b5803ed9a40f https://www.encodeproject.org/files/ENCFF125DTK/@@download/ENCFF125DTK.bam released s3://encode-public/2021/03/18/5f0ffe68-c978-47ad-a56b-0b366ee49580/ENCFF125DTK.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF310HDF fastq fastq reads ENCSR648BQI Control ChIP-seq /worm-donors/ENCDO478BEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 148730253 Michael Snyder, Stanford 3d670203c1e431b3ae6db4a727e06487 https://www.encodeproject.org/files/ENCFF310HDF/@@download/ENCFF310HDF.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/6d516c22-6526-49a8-9a65-88893f3f7c15/ENCFF310HDF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF509ITF fastq fastq reads ENCSR648BQI Control ChIP-seq /worm-donors/ENCDO478BEQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 3 3_1 32 single-ended 172692655 Michael Snyder, Stanford e1a95a3f50920fcc234042baa495079b https://www.encodeproject.org/files/ENCFF509ITF/@@download/ENCFF509ITF.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2016/01/14/2308a734-b4f9-47ec-bd43-19479ae6a6db/ENCFF509ITF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF946SZJ fastq fastq reads ENCSR865FVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1332'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25799/'], '@type': ['Target', 'Item'], 'name': 'ZNF324-human', 'label': 'ZNF324', '@id': '/targets/ZNF324-human/', 'title': 'ZNF324 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ba507c2a-6ed7-4908-b19f-2cea634da0bf', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF497OOT/ 1879000067 Michael Snyder, Stanford 34eae156a1c7a4641030100ca0123d1a https://www.encodeproject.org/files/ENCFF946SZJ/@@download/ENCFF946SZJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/d4d1576e-aa4e-4f04-b3df-ca0458f49050/ENCFF946SZJ.fastq.gz mild to moderate bottlenecking ENCFF497OOT fastq fastq reads ENCSR865FVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1332'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25799/'], '@type': ['Target', 'Item'], 'name': 'ZNF324-human', 'label': 'ZNF324', '@id': '/targets/ZNF324-human/', 'title': 'ZNF324 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ba507c2a-6ed7-4908-b19f-2cea634da0bf', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF946SZJ/ 2085340847 Michael Snyder, Stanford 4858d23614522fb87efbbbe8481eeb74 https://www.encodeproject.org/files/ENCFF497OOT/@@download/ENCFF497OOT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/0c56acd2-a0fa-490b-95be-d0f09f068ea7/ENCFF497OOT.fastq.gz mild to moderate bottlenecking ENCFF553SQM bam bam alignments GRCh38 ENCSR865FVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1332'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25799/'], '@type': ['Target', 'Item'], 'name': 'ZNF324-human', 'label': 'ZNF324', '@id': '/targets/ZNF324-human/', 'title': 'ZNF324 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ba507c2a-6ed7-4908-b19f-2cea634da0bf', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF946SZJ/, /files/ENCFF497OOT/ 3113695248 ENCODE Processing Pipeline c6655584e602b402733e90984de23e90 https://www.encodeproject.org/files/ENCFF553SQM/@@download/ENCFF553SQM.bam released s3://encode-public/2020/05/15/2a3e1dde-2ad0-4a68-90f0-71c46f1a85a9/ENCFF553SQM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF182ZDU bam bam unfiltered alignments GRCh38 ENCSR865FVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1332'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25799/'], '@type': ['Target', 'Item'], 'name': 'ZNF324-human', 'label': 'ZNF324', '@id': '/targets/ZNF324-human/', 'title': 'ZNF324 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ba507c2a-6ed7-4908-b19f-2cea634da0bf', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF946SZJ/, /files/ENCFF497OOT/ 3948528494 ENCODE Processing Pipeline e6ea0d75e68b31fce5a51b18f09be5f2 https://www.encodeproject.org/files/ENCFF182ZDU/@@download/ENCFF182ZDU.bam released s3://encode-public/2020/05/15/416e6795-7235-496e-96fd-757507c095e9/ENCFF182ZDU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF664NKL fastq fastq reads ENCSR015BRP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1179'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57116/'], '@type': ['Target', 'Item'], 'name': 'ZNF695-human', 'label': 'ZNF695', '@id': '/targets/ZNF695-human/', 'title': 'ZNF695 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7c3d714-aba1-481f-b720-a3f592f5cb2b', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF056RVJ/ 2685676395 Michael Snyder, Stanford cbdf17e481101f4dae567e280b387036 https://www.encodeproject.org/files/ENCFF664NKL/@@download/ENCFF664NKL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/73cee9a9-debb-4bf8-85db-3d445e06628f/ENCFF664NKL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF056RVJ fastq fastq reads ENCSR015BRP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1179'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57116/'], '@type': ['Target', 'Item'], 'name': 'ZNF695-human', 'label': 'ZNF695', '@id': '/targets/ZNF695-human/', 'title': 'ZNF695 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7c3d714-aba1-481f-b720-a3f592f5cb2b', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF664NKL/ 2302154015 Michael Snyder, Stanford c73f5e578e921df5a3f951c138567ae4 https://www.encodeproject.org/files/ENCFF056RVJ/@@download/ENCFF056RVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/731ce91c-baf0-4421-bf67-20bf839d4448/ENCFF056RVJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF540BOQ bam bam alignments GRCh38 ENCSR015BRP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1179'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57116/'], '@type': ['Target', 'Item'], 'name': 'ZNF695-human', 'label': 'ZNF695', '@id': '/targets/ZNF695-human/', 'title': 'ZNF695 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7c3d714-aba1-481f-b720-a3f592f5cb2b', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF056RVJ/, /files/ENCFF664NKL/ 3113193736 ENCODE Processing Pipeline 536318c77e1f27d43a64fd947785074d https://www.encodeproject.org/files/ENCFF540BOQ/@@download/ENCFF540BOQ.bam released s3://encode-public/2020/04/21/d776b490-a65d-4209-a949-693c6dec64d5/ENCFF540BOQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF206JPB bam bam unfiltered alignments GRCh38 ENCSR015BRP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1179'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57116/'], '@type': ['Target', 'Item'], 'name': 'ZNF695-human', 'label': 'ZNF695', '@id': '/targets/ZNF695-human/', 'title': 'ZNF695 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7c3d714-aba1-481f-b720-a3f592f5cb2b', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF056RVJ/, /files/ENCFF664NKL/ 4797501641 ENCODE Processing Pipeline a03fbd141cf35d82e66e61d98a9a701d https://www.encodeproject.org/files/ENCFF206JPB/@@download/ENCFF206JPB.bam released s3://encode-public/2020/04/21/a87ad167-57b2-4eed-9ed2-d616f6eced35/ENCFF206JPB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF185EAF fastq fastq reads ENCSR641LIQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-960'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84913/'], '@type': ['Target', 'Item'], 'name': 'ATOH8-human', 'label': 'ATOH8', '@id': '/targets/ATOH8-human/', 'title': 'ATOH8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd2f59a6c-0ad5-4668-83e5-000f5b5bfb5e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF839AJF/ 2157832251 Michael Snyder, Stanford bf33987570222b9e626577a7f22e76f2 SRA:SRR14107745 https://www.encodeproject.org/files/ENCFF185EAF/@@download/ENCFF185EAF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/49dd2701-5193-4069-9f23-7a10c40bed52/ENCFF185EAF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF839AJF fastq fastq reads ENCSR641LIQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-960'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84913/'], '@type': ['Target', 'Item'], 'name': 'ATOH8-human', 'label': 'ATOH8', '@id': '/targets/ATOH8-human/', 'title': 'ATOH8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd2f59a6c-0ad5-4668-83e5-000f5b5bfb5e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF185EAF/ 2427482044 Michael Snyder, Stanford 22491314cfa728687a88ae474082453c SRA:SRR14107745 https://www.encodeproject.org/files/ENCFF839AJF/@@download/ENCFF839AJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/d60ea496-dd79-4522-a016-e445e9af5368/ENCFF839AJF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF589HGB bam bam unfiltered alignments GRCh38 ENCSR641LIQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-960'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84913/'], '@type': ['Target', 'Item'], 'name': 'ATOH8-human', 'label': 'ATOH8', '@id': '/targets/ATOH8-human/', 'title': 'ATOH8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd2f59a6c-0ad5-4668-83e5-000f5b5bfb5e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF185EAF/, /files/ENCFF839AJF/ 4270311824 ENCODE Processing Pipeline 8c7ac2f44465c1f57f5a57888829f0e0 https://www.encodeproject.org/files/ENCFF589HGB/@@download/ENCFF589HGB.bam released s3://encode-public/2020/04/21/fdf98724-6d42-437a-89d7-85b0feea0ec6/ENCFF589HGB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF300QFQ bam bam alignments GRCh38 ENCSR641LIQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-960'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84913/'], '@type': ['Target', 'Item'], 'name': 'ATOH8-human', 'label': 'ATOH8', '@id': '/targets/ATOH8-human/', 'title': 'ATOH8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd2f59a6c-0ad5-4668-83e5-000f5b5bfb5e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF185EAF/, /files/ENCFF839AJF/ 3092603335 ENCODE Processing Pipeline eb1b0ae0ed75baf65ae158580034db7c https://www.encodeproject.org/files/ENCFF300QFQ/@@download/ENCFF300QFQ.bam released s3://encode-public/2020/04/21/9424d818-a25d-4578-9a55-58cc4ae84d96/ENCFF300QFQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF122AVF fastq fastq reads ENCSR146HFQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/282890/'], '@type': ['Target', 'Item'], 'name': 'ZNF311-human', 'label': 'ZNF311', '@id': '/targets/ZNF311-human/', 'title': 'ZNF311 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '151b817d-4c26-4b53-83f3-0a3bb0e653a1', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF913JJH/ 2734863372 Michael Snyder, Stanford 14ace74999c269a165b081eaa9d8e609 https://www.encodeproject.org/files/ENCFF122AVF/@@download/ENCFF122AVF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/6e352622-f6d2-4602-8195-c32acd1ee4eb/ENCFF122AVF.fastq.gz mild to moderate bottlenecking ENCFF913JJH fastq fastq reads ENCSR146HFQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/282890/'], '@type': ['Target', 'Item'], 'name': 'ZNF311-human', 'label': 'ZNF311', '@id': '/targets/ZNF311-human/', 'title': 'ZNF311 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '151b817d-4c26-4b53-83f3-0a3bb0e653a1', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF122AVF/ 3120674188 Michael Snyder, Stanford 5811e98a1a47670e935a85e5a716d0d1 https://www.encodeproject.org/files/ENCFF913JJH/@@download/ENCFF913JJH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/5f3f4bff-caa6-4312-ad95-2d6095bab3e3/ENCFF913JJH.fastq.gz mild to moderate bottlenecking ENCFF660CTM bam bam unfiltered alignments GRCh38 ENCSR146HFQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/282890/'], '@type': ['Target', 'Item'], 'name': 'ZNF311-human', 'label': 'ZNF311', '@id': '/targets/ZNF311-human/', 'title': 'ZNF311 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '151b817d-4c26-4b53-83f3-0a3bb0e653a1', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF122AVF/, /files/ENCFF913JJH/ 5467748301 ENCODE Processing Pipeline 06cb7707b682fa6952f7ec845d810630 https://www.encodeproject.org/files/ENCFF660CTM/@@download/ENCFF660CTM.bam released s3://encode-public/2020/04/21/3917d275-4579-4b55-b4d3-59bb7ed1dacd/ENCFF660CTM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF843BWE bam bam alignments GRCh38 ENCSR146HFQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/282890/'], '@type': ['Target', 'Item'], 'name': 'ZNF311-human', 'label': 'ZNF311', '@id': '/targets/ZNF311-human/', 'title': 'ZNF311 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '151b817d-4c26-4b53-83f3-0a3bb0e653a1', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF122AVF/, /files/ENCFF913JJH/ 4153594530 ENCODE Processing Pipeline 6846c7536ec43a1805dc428f11d793b3 https://www.encodeproject.org/files/ENCFF843BWE/@@download/ENCFF843BWE.bam released s3://encode-public/2020/04/21/f69e6abc-4e42-4d2c-be9b-10f95a11089d/ENCFF843BWE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF142NKQ fastq fastq reads ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1221156929 Bradley Bernstein, Broad 6ddfb1551017a6cf019eecc06e7fe08c SRA:SRR8275155 https://www.encodeproject.org/files/ENCFF142NKQ/@@download/ENCFF142NKQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/34fd5104-1a5f-4be5-be6e-a3a51688e0b7/ENCFF142NKQ.fastq.gz ENCFF649ZVW fastq fastq reads ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 764654484 Bradley Bernstein, Broad 4e743fa2f839e97dcacd5d76a7b8fd5d SRA:SRR8275156 https://www.encodeproject.org/files/ENCFF649ZVW/@@download/ENCFF649ZVW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/a499d56f-ce05-40a0-bf1e-272a0a81dc7c/ENCFF649ZVW.fastq.gz ENCFF075YVC fastq fastq reads ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 847536842 Bradley Bernstein, Broad fa267e7fd43b0f63ce3036831f89b1bf SRA:SRR8275157 https://www.encodeproject.org/files/ENCFF075YVC/@@download/ENCFF075YVC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/80608b57-4961-4f7a-aba9-0169800c73f2/ENCFF075YVC.fastq.gz ENCFF620XGN fastq fastq reads ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1181569713 Bradley Bernstein, Broad 02c5b46abdca38fc859b2e0d007f66a3 SRA:SRR8275158 https://www.encodeproject.org/files/ENCFF620XGN/@@download/ENCFF620XGN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/906ee3be-269c-4619-aae8-db4e55ad145f/ENCFF620XGN.fastq.gz ENCFF105EYC bam bam unfiltered alignments GRCh38 ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF142NKQ/, /files/ENCFF643CGH/, /files/ENCFF075YVC/, /files/ENCFF620XGN/, /files/ENCFF649ZVW/ 3897806213 ENCODE Processing Pipeline 9ed98b1197c7b04fa4d94aa51737bb61 https://www.encodeproject.org/files/ENCFF105EYC/@@download/ENCFF105EYC.bam released s3://encode-public/2016/10/27/2aa517f0-40c6-438d-9d21-0182c05f7e62/ENCFF105EYC.bam ENCODE3 GRCh38 archived ENCFF368XXA bam bam unfiltered alignments hg19 ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF142NKQ/, /files/ENCFF807MUK/, /files/ENCFF075YVC/, /files/ENCFF620XGN/, /files/ENCFF649ZVW/ 3885703730 ENCODE Processing Pipeline 73efc937efc1aae8a3184830c91df0c0 https://www.encodeproject.org/files/ENCFF368XXA/@@download/ENCFF368XXA.bam released s3://encode-public/2016/10/27/24047286-2419-4873-a3cb-2ffc0427f5ba/ENCFF368XXA.bam ENCODE3 hg19 archived ENCFF352KCS bam bam alignments GRCh38 ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF142NKQ/, /files/ENCFF643CGH/, /files/ENCFF075YVC/, /files/ENCFF620XGN/, /files/ENCFF649ZVW/ 3219860539 ENCODE Processing Pipeline d605a51d9e959be9196972a61b621728 https://www.encodeproject.org/files/ENCFF352KCS/@@download/ENCFF352KCS.bam released s3://encode-public/2016/10/27/f80d6634-6485-447b-b04c-89262c36bd74/ENCFF352KCS.bam ENCODE3 GRCh38 archived ENCFF108BMA bam bam alignments hg19 ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF142NKQ/, /files/ENCFF807MUK/, /files/ENCFF075YVC/, /files/ENCFF620XGN/, /files/ENCFF649ZVW/ 3215576212 ENCODE Processing Pipeline 169a1961599840615c1ffcb79857e14f https://www.encodeproject.org/files/ENCFF108BMA/@@download/ENCFF108BMA.bam released s3://encode-public/2016/10/27/f189105f-7728-499f-a878-69c49b1afb3b/ENCFF108BMA.bam ENCODE3 hg19 archived ENCFF102VFD bam bam unfiltered alignments GRCh38 ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF075YVC/, /files/ENCFF649ZVW/, /files/ENCFF110MCL/, /files/ENCFF142NKQ/, /files/ENCFF620XGN/ 3943753354 ENCODE Processing Pipeline ec1c21c917951c229efc078367670d44 https://www.encodeproject.org/files/ENCFF102VFD/@@download/ENCFF102VFD.bam released s3://encode-public/2020/08/20/f90ad723-7129-404f-bf88-d132dc61f9c1/ENCFF102VFD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF256TIO bam bam alignments GRCh38 ENCSR968GYD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF075YVC/, /files/ENCFF649ZVW/, /files/ENCFF110MCL/, /files/ENCFF142NKQ/, /files/ENCFF620XGN/ 3294415774 ENCODE Processing Pipeline 8519abeff255f8ddae0a28ccb6a83c78 https://www.encodeproject.org/files/ENCFF256TIO/@@download/ENCFF256TIO.bam released s3://encode-public/2020/08/20/a5bbe6e0-1c90-4d98-a122-6cbb7f69e207/ENCFF256TIO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF840QIA fastq fastq reads ENCSR839RAE Control ChIP-seq /fly-donors/ENCDO268HSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36158/'], '@type': ['Target', 'Item'], 'name': 'CG12942-dmelanogaster', 'label': 'CG12942', '@id': '/targets/CG12942-dmelanogaster/', 'title': 'CG12942 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '83777ef9-f168-4e01-80a9-be1a99a02e6d', 'status': 'released'} dm3 2R 6770922 6791970 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1137319440 Kevin White, UChicago f31883265bf311c06b44fef5fa498f8f https://www.encodeproject.org/files/ENCFF840QIA/@@download/ENCFF840QIA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/3d90f9cc-3f0b-408b-9267-e91e5df60b58/ENCFF840QIA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF946YDY bam bam alignments dm3 ENCSR839RAE Control ChIP-seq /fly-donors/ENCDO268HSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36158/'], '@type': ['Target', 'Item'], 'name': 'CG12942-dmelanogaster', 'label': 'CG12942', '@id': '/targets/CG12942-dmelanogaster/', 'title': 'CG12942 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '83777ef9-f168-4e01-80a9-be1a99a02e6d', 'status': 'released'} dm3 2R 6770922 6791970 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF840QIA/, /files/ENCFF059UHX/ 1375385893 Kevin White, UChicago ed528536a8851bfea6a39f873bc7433e https://www.encodeproject.org/files/ENCFF946YDY/@@download/ENCFF946YDY.bam released s3://encode-public/2016/08/04/57c365f2-35ae-4c8b-bf40-7bae63631a84/ENCFF946YDY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF714WAD bam bam alignments dm6 ENCSR839RAE Control ChIP-seq /fly-donors/ENCDO268HSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36158/'], '@type': ['Target', 'Item'], 'name': 'CG12942-dmelanogaster', 'label': 'CG12942', '@id': '/targets/CG12942-dmelanogaster/', 'title': 'CG12942 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '83777ef9-f168-4e01-80a9-be1a99a02e6d', 'status': 'released'} dm3 2R 6770922 6791970 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF840QIA/, /files/ENCFF479RCH/ 1370432537 Kevin White, UChicago 330790308abed4d727cf2eaedff37205 https://www.encodeproject.org/files/ENCFF714WAD/@@download/ENCFF714WAD.bam released s3://encode-public/2016/08/04/feb4ae46-601c-49d5-ab79-ac4d74a0fe8c/ENCFF714WAD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF732WOO bigWig bigWig read-depth normalized signal dm3 ENCSR839RAE Control ChIP-seq /fly-donors/ENCDO268HSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36158/'], '@type': ['Target', 'Item'], 'name': 'CG12942-dmelanogaster', 'label': 'CG12942', '@id': '/targets/CG12942-dmelanogaster/', 'title': 'CG12942 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '83777ef9-f168-4e01-80a9-be1a99a02e6d', 'status': 'released'} dm3 2R 6770922 6791970 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF946YDY/ 15469810 Kevin White, UChicago 36963304ebd9d96614bfbccd1baf8ade https://www.encodeproject.org/files/ENCFF732WOO/@@download/ENCFF732WOO.bigWig released s3://encode-public/2016/08/04/817fea20-d69a-4f5f-9c60-49e888e89261/ENCFF732WOO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF475VUI bigWig bigWig signal of unique reads dm3 ENCSR839RAE Control ChIP-seq /fly-donors/ENCDO268HSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36158/'], '@type': ['Target', 'Item'], 'name': 'CG12942-dmelanogaster', 'label': 'CG12942', '@id': '/targets/CG12942-dmelanogaster/', 'title': 'CG12942 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '83777ef9-f168-4e01-80a9-be1a99a02e6d', 'status': 'released'} dm3 2R 6770922 6791970 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF946YDY/ 15422333 Kevin White, UChicago b102787bf750e75d4bd68ac976b24be2 https://www.encodeproject.org/files/ENCFF475VUI/@@download/ENCFF475VUI.bigWig released s3://encode-public/2016/08/04/f1e29572-e589-4823-835b-020a6c92634d/ENCFF475VUI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF637TQP bigWig bigWig read-depth normalized signal dm6 ENCSR839RAE Control ChIP-seq /fly-donors/ENCDO268HSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36158/'], '@type': ['Target', 'Item'], 'name': 'CG12942-dmelanogaster', 'label': 'CG12942', '@id': '/targets/CG12942-dmelanogaster/', 'title': 'CG12942 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '83777ef9-f168-4e01-80a9-be1a99a02e6d', 'status': 'released'} dm3 2R 6770922 6791970 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714WAD/ 17567070 Kevin White, UChicago 29304be906be30f214ab8ca73ade3589 https://www.encodeproject.org/files/ENCFF637TQP/@@download/ENCFF637TQP.bigWig released s3://encode-public/2016/08/04/18dcd7c8-31e7-4f98-ab4b-f5fe8a958ed1/ENCFF637TQP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF499MDE bigWig bigWig signal of unique reads dm6 ENCSR839RAE Control ChIP-seq /fly-donors/ENCDO268HSR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36158/'], '@type': ['Target', 'Item'], 'name': 'CG12942-dmelanogaster', 'label': 'CG12942', '@id': '/targets/CG12942-dmelanogaster/', 'title': 'CG12942 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '83777ef9-f168-4e01-80a9-be1a99a02e6d', 'status': 'released'} dm3 2R 6770922 6791970 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714WAD/ 17487592 Kevin White, UChicago ba076f5893cc1c47330ac8315d5475df https://www.encodeproject.org/files/ENCFF499MDE/@@download/ENCFF499MDE.bigWig released s3://encode-public/2016/08/04/1c986039-2a4f-4c7f-8e1e-2890c130112c/ENCFF499MDE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF812KHV fastq fastq reads ENCSR497AAP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA formaldehyde 2021-07-14 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF486QQJ/ 3024977013 Michael Snyder, Stanford 3c9f9aea8a9524c173c22bae7585c097 https://www.encodeproject.org/files/ENCFF812KHV/@@download/ENCFF812KHV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/0f94e8ee-faf0-4dfc-868a-1e679a3ca78f/ENCFF812KHV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF486QQJ fastq fastq reads ENCSR497AAP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA formaldehyde 2021-07-14 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF812KHV/ 2511393109 Michael Snyder, Stanford d5c50279567898bc7664017ed8e63649 https://www.encodeproject.org/files/ENCFF486QQJ/@@download/ENCFF486QQJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/9abd98a0-1f49-40f4-a9e3-16f7f0c09169/ENCFF486QQJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF824QJC bam bam alignments GRCh38 ENCSR497AAP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA formaldehyde 2021-07-14 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF486QQJ/, /files/ENCFF812KHV/ 3606026765 ENCODE Processing Pipeline af2f179d6e386649b07194a010b0801d https://www.encodeproject.org/files/ENCFF824QJC/@@download/ENCFF824QJC.bam released s3://encode-public/2020/04/21/2561de1a-e9f5-4f5c-a072-3204ede41f46/ENCFF824QJC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF608ZMV bam bam unfiltered alignments GRCh38 ENCSR497AAP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA formaldehyde 2021-07-14 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF486QQJ/, /files/ENCFF812KHV/ 5200343227 ENCODE Processing Pipeline b0a82fc02b4dfa25449a7fbc0b641311 https://www.encodeproject.org/files/ENCFF608ZMV/@@download/ENCFF608ZMV.bam released s3://encode-public/2020/04/21/456c0429-9e82-4d9c-95cd-b07165dea11b/ENCFF608ZMV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF175LBB fastq fastq reads ENCSR236QAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1156'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57541/'], '@type': ['Target', 'Item'], 'name': 'ZNF398-human', 'label': 'ZNF398', '@id': '/targets/ZNF398-human/', 'title': 'ZNF398 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3489bb82-57e5-4bbd-b63a-5158c8d32f03', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF883DBZ/ 1999620008 Michael Snyder, Stanford 3a67d0e3939e0adf1b04b4787b0cdcd2 SRA:SRR14835605 https://www.encodeproject.org/files/ENCFF175LBB/@@download/ENCFF175LBB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/ae0a0844-24d7-422d-9422-df84beb43858/ENCFF175LBB.fastq.gz mild to moderate bottlenecking ENCFF883DBZ fastq fastq reads ENCSR236QAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1156'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57541/'], '@type': ['Target', 'Item'], 'name': 'ZNF398-human', 'label': 'ZNF398', '@id': '/targets/ZNF398-human/', 'title': 'ZNF398 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3489bb82-57e5-4bbd-b63a-5158c8d32f03', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF175LBB/ 2241166818 Michael Snyder, Stanford 581cf48d36991355aa967cb98422148b SRA:SRR14835605 https://www.encodeproject.org/files/ENCFF883DBZ/@@download/ENCFF883DBZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/d50154c4-a51c-40c0-82c7-f8e9c8817801/ENCFF883DBZ.fastq.gz mild to moderate bottlenecking ENCFF594RIJ bam bam alignments GRCh38 ENCSR236QAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1156'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57541/'], '@type': ['Target', 'Item'], 'name': 'ZNF398-human', 'label': 'ZNF398', '@id': '/targets/ZNF398-human/', 'title': 'ZNF398 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3489bb82-57e5-4bbd-b63a-5158c8d32f03', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF175LBB/, /files/ENCFF883DBZ/ 3305084774 ENCODE Processing Pipeline 70d858b1df9c2ebd185c7dfda618f520 https://www.encodeproject.org/files/ENCFF594RIJ/@@download/ENCFF594RIJ.bam released s3://encode-public/2020/05/15/5646ad1b-6aee-4b1e-90d7-326568095383/ENCFF594RIJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF853JAE bam bam unfiltered alignments GRCh38 ENCSR236QAK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1156'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57541/'], '@type': ['Target', 'Item'], 'name': 'ZNF398-human', 'label': 'ZNF398', '@id': '/targets/ZNF398-human/', 'title': 'ZNF398 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3489bb82-57e5-4bbd-b63a-5158c8d32f03', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF175LBB/, /files/ENCFF883DBZ/ 4134059204 ENCODE Processing Pipeline e87f24e7859ca1cf8793d0fb9df2d909 https://www.encodeproject.org/files/ENCFF853JAE/@@download/ENCFF853JAE.bam released s3://encode-public/2020/05/15/cba416f2-eaaa-4d94-a7be-a7c9f70824a2/ENCFF853JAE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF600KVA fastq fastq reads ENCSR373JEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF595AOZ/ 2287620689 Michael Snyder, Stanford 1597e787e0c84de53b51538f237f8ee0 https://www.encodeproject.org/files/ENCFF600KVA/@@download/ENCFF600KVA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/c36b2761-32b5-42d2-94ee-936a0d73474d/ENCFF600KVA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF595AOZ fastq fastq reads ENCSR373JEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF600KVA/ 2009743084 Michael Snyder, Stanford 14dde475d16d39058f8f9fb5a8c0b292 https://www.encodeproject.org/files/ENCFF595AOZ/@@download/ENCFF595AOZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/81d5272d-dcc7-4aea-8842-38172a779388/ENCFF595AOZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF173VZZ bam bam alignments GRCh38 ENCSR373JEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF595AOZ/, /files/ENCFF600KVA/ 2544205155 ENCODE Processing Pipeline 21a89572c6cff9ac6d8e55208ebffa56 https://www.encodeproject.org/files/ENCFF173VZZ/@@download/ENCFF173VZZ.bam released s3://encode-public/2020/04/21/19a209e4-ea5b-4464-85fd-12692592e7c7/ENCFF173VZZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF156WVQ bam bam unfiltered alignments GRCh38 ENCSR373JEF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF595AOZ/, /files/ENCFF600KVA/ 3924478974 ENCODE Processing Pipeline 2f73101e7cb3cd2478d93e25ef520fec https://www.encodeproject.org/files/ENCFF156WVQ/@@download/ENCFF156WVQ.bam released s3://encode-public/2020/04/21/80db59d9-c60f-41be-b783-63756cb787a2/ENCFF156WVQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF875MBM fastq fastq reads ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF267TPL/ 8884053387 Richard Myers, HAIB 27310501cae21e8b988ea8ef6d3ed15e SRA:SRR6213519 https://www.encodeproject.org/files/ENCFF875MBM/@@download/ENCFF875MBM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/b9449019-2918-47c9-96ee-927c281004bb/ENCFF875MBM.fastq.gz ENCFF267TPL fastq fastq reads ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF875MBM/ 9178428890 Richard Myers, HAIB dafcc9ebbc4a65afd79121fdee053be5 SRA:SRR6213519 https://www.encodeproject.org/files/ENCFF267TPL/@@download/ENCFF267TPL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/0ce9d8c4-73a4-4c68-bd1d-0315265ab53f/ENCFF267TPL.fastq.gz ENCFF850DXZ bam bam unfiltered alignments hg19 ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF267TPL/, /files/ENCFF807MUK/, /files/ENCFF875MBM/ 19818568366 ENCODE Processing Pipeline 154b28183a4b220f120f10a948e86c2c https://www.encodeproject.org/files/ENCFF850DXZ/@@download/ENCFF850DXZ.bam released s3://encode-public/2017/02/02/562b6dc1-25d4-48af-abf4-7e2bbacb3f87/ENCFF850DXZ.bam ENCODE3 hg19 archived ENCFF237TWN bam bam alignments hg19 ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF267TPL/, /files/ENCFF807MUK/, /files/ENCFF875MBM/ 11715507528 ENCODE Processing Pipeline 32936656a51bdcb3e8218bb0e5f68134 https://www.encodeproject.org/files/ENCFF237TWN/@@download/ENCFF237TWN.bam released s3://encode-public/2017/02/02/f9c72d70-976a-4cbf-b994-118f7ba54e4f/ENCFF237TWN.bam ENCODE3 hg19 archived ENCFF885PKU bam bam unfiltered alignments GRCh38 ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF267TPL/, /files/ENCFF875MBM/, /files/ENCFF643CGH/ 19887231801 ENCODE Processing Pipeline beb4a9a20fafd9fc151457c25b39eee6 https://www.encodeproject.org/files/ENCFF885PKU/@@download/ENCFF885PKU.bam released s3://encode-public/2017/02/02/248e79f2-474e-49f6-b6b9-dd9476732820/ENCFF885PKU.bam ENCODE3 GRCh38 archived ENCFF159MRR bam bam alignments GRCh38 ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF267TPL/, /files/ENCFF875MBM/, /files/ENCFF643CGH/ 11733439138 ENCODE Processing Pipeline ef8418cea8f859ec540dd455d8381a78 https://www.encodeproject.org/files/ENCFF159MRR/@@download/ENCFF159MRR.bam released s3://encode-public/2017/02/02/5e35f829-6243-4941-b01c-ce9a4a2511d3/ENCFF159MRR.bam ENCODE3 GRCh38 archived ENCFF912WAG bam bam unfiltered alignments GRCh38 ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF875MBM/, /files/ENCFF267TPL/ 20503101375 ENCODE Processing Pipeline 99d9403b7490e19437524f5de454422b https://www.encodeproject.org/files/ENCFF912WAG/@@download/ENCFF912WAG.bam released s3://encode-public/2020/06/06/099d4c81-89aa-4659-aa2e-5b671c6be069/ENCFF912WAG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF175HWI bam bam alignments GRCh38 ENCSR509RYG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-06-15 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF875MBM/, /files/ENCFF267TPL/ 11074560381 ENCODE Processing Pipeline 567733c5835013fe9a5e2dfe73c44d6d https://www.encodeproject.org/files/ENCFF175HWI/@@download/ENCFF175HWI.bam released s3://encode-public/2020/06/06/47361b47-6ea3-49a3-ab47-7b3515715325/ENCFF175HWI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF886FQJ fastq fastq reads ENCSR293CYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF444'], 'aliases': ['michael-snyder:TS-1224'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55311/'], '@type': ['Target', 'Item'], 'label': 'ZNF444', 'title': 'ZNF444 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2186a6a5-4ab7-4f6e-b121-09b7853473e0', 'schema_version': '14', 'name': 'ZNF444-human', '@id': '/targets/ZNF444-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF763JAV/ 2066481506 Michael Snyder, Stanford 57c255d511c45b11e5ee5158c3313037 https://www.encodeproject.org/files/ENCFF886FQJ/@@download/ENCFF886FQJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/c8f88570-7ede-456c-8a19-37e5b2d8f5d3/ENCFF886FQJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF763JAV fastq fastq reads ENCSR293CYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF444'], 'aliases': ['michael-snyder:TS-1224'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55311/'], '@type': ['Target', 'Item'], 'label': 'ZNF444', 'title': 'ZNF444 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2186a6a5-4ab7-4f6e-b121-09b7853473e0', 'schema_version': '14', 'name': 'ZNF444-human', '@id': '/targets/ZNF444-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF886FQJ/ 2313743933 Michael Snyder, Stanford 8b04129f9ef86e7dfc15c2b59b617674 https://www.encodeproject.org/files/ENCFF763JAV/@@download/ENCFF763JAV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/debf5d30-4e8c-41c1-aa91-f5af93b07477/ENCFF763JAV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF760RFF bam bam unfiltered alignments GRCh38 ENCSR293CYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF444'], 'aliases': ['michael-snyder:TS-1224'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55311/'], '@type': ['Target', 'Item'], 'label': 'ZNF444', 'title': 'ZNF444 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2186a6a5-4ab7-4f6e-b121-09b7853473e0', 'schema_version': '14', 'name': 'ZNF444-human', '@id': '/targets/ZNF444-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF886FQJ/, /files/ENCFF763JAV/ 4152115620 ENCODE Processing Pipeline 4895bcdb29a7a0f299c5a398d7f401c0 https://www.encodeproject.org/files/ENCFF760RFF/@@download/ENCFF760RFF.bam released s3://encode-public/2020/05/15/9ff76fd0-a67f-45b8-89c0-1ef75ef240e4/ENCFF760RFF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF753FLI bam bam alignments GRCh38 ENCSR293CYB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF444'], 'aliases': ['michael-snyder:TS-1224'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55311/'], '@type': ['Target', 'Item'], 'label': 'ZNF444', 'title': 'ZNF444 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2186a6a5-4ab7-4f6e-b121-09b7853473e0', 'schema_version': '14', 'name': 'ZNF444-human', '@id': '/targets/ZNF444-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF886FQJ/, /files/ENCFF763JAV/ 2949749138 ENCODE Processing Pipeline 5c4f794838339bb7b3abf829a2685a47 https://www.encodeproject.org/files/ENCFF753FLI/@@download/ENCFF753FLI.bam released s3://encode-public/2020/05/15/b7d94503-1e32-49b0-93b0-62438e2f6ee1/ENCFF753FLI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF564XPO fastq fastq reads ENCSR170WVI Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-11 ENCODE see document 1 1_1 50 single-ended 951451555 Richard Myers, HAIB cc7692a71bcf4fd63506d6c27055973c SRA:SRR5331364 https://www.encodeproject.org/files/ENCFF564XPO/@@download/ENCFF564XPO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/d45ed07b-6bf3-4893-9f1e-8da4c72b7d7f/ENCFF564XPO.fastq.gz ENCFF981TAN bam bam unfiltered alignments GRCh38 ENCSR170WVI Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF564XPO/ 1085825770 ENCODE Processing Pipeline 4d37dcb966142fd71c135e636b6dd12e https://www.encodeproject.org/files/ENCFF981TAN/@@download/ENCFF981TAN.bam released s3://encode-public/2016/09/19/3cd1c5be-0cac-48bb-923d-5600d8916983/ENCFF981TAN.bam ENCODE3 GRCh38 archived ENCFF070FQW bam bam unfiltered alignments hg19 ENCSR170WVI Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF564XPO/ 1083015138 ENCODE Processing Pipeline 433af5582e446824e1ae4cfb46bda382 https://www.encodeproject.org/files/ENCFF070FQW/@@download/ENCFF070FQW.bam released s3://encode-public/2016/09/19/ef747c75-43cb-445f-b358-3acfb1d34a40/ENCFF070FQW.bam ENCODE3 hg19 archived ENCFF389HKQ bam bam alignments GRCh38 ENCSR170WVI Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF564XPO/ 872093386 ENCODE Processing Pipeline d875812174465ecf75fa64996f828ce9 https://www.encodeproject.org/files/ENCFF389HKQ/@@download/ENCFF389HKQ.bam released s3://encode-public/2016/09/19/36da1dfc-f287-4b85-958a-3f537dde4650/ENCFF389HKQ.bam ENCODE3 GRCh38 archived ENCFF829HKP bam bam alignments hg19 ENCSR170WVI Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF564XPO/ 871971541 ENCODE Processing Pipeline 1c0aa5b50dc7024165b8d73ca48b6153 https://www.encodeproject.org/files/ENCFF829HKP/@@download/ENCFF829HKP.bam released s3://encode-public/2016/09/19/67f04d06-54df-4963-988a-166d4dd9cd37/ENCFF829HKP.bam ENCODE3 hg19 archived ENCFF924JUP bam bam unfiltered alignments GRCh38 ENCSR170WVI Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF564XPO/, /files/ENCFF110MCL/ 1074873086 ENCODE Processing Pipeline 19efa8bb57fa0755062b2efc226dec26 https://www.encodeproject.org/files/ENCFF924JUP/@@download/ENCFF924JUP.bam released s3://encode-public/2020/06/25/18813cdf-5d5e-4983-8ac6-174a8ae3e388/ENCFF924JUP.bam ENCODE4 GRCh38 released ENCFF778UPP bam bam alignments GRCh38 ENCSR170WVI Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF564XPO/, /files/ENCFF110MCL/ 894672807 ENCODE Processing Pipeline 352d3c69bc9b14dde4f1f65245bf149b https://www.encodeproject.org/files/ENCFF778UPP/@@download/ENCFF778UPP.bam released s3://encode-public/2020/06/25/76df287a-c6ef-42fb-a920-70fccfa9343b/ENCFF778UPP.bam ENCODE4 GRCh38 released ENCFF080CGR fastq fastq reads ENCSR032BUQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF312FJB/ 1791048564 Michael Snyder, Stanford 81a2a6d7fd9e0587862c7732dd9e33ac https://www.encodeproject.org/files/ENCFF080CGR/@@download/ENCFF080CGR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/06bece94-42b9-4be8-b6b2-8d8274057991/ENCFF080CGR.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF312FJB fastq fastq reads ENCSR032BUQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF080CGR/ 2117650770 Michael Snyder, Stanford eece2b707121bc5609810018962e9f4b https://www.encodeproject.org/files/ENCFF312FJB/@@download/ENCFF312FJB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/4b480167-616a-4fd5-b24d-dcc7bafbe087/ENCFF312FJB.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF936TTT fastq fastq reads ENCSR032BUQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF055BIL/ 1684168958 Michael Snyder, Stanford daf8aac80e7f7842ac1303b16514a83f https://www.encodeproject.org/files/ENCFF936TTT/@@download/ENCFF936TTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/e518629c-902c-4edb-966e-e2830dcb7c46/ENCFF936TTT.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF055BIL fastq fastq reads ENCSR032BUQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF936TTT/ 1492372855 Michael Snyder, Stanford 263d33033fde15344aa89c7ed5b13bf1 https://www.encodeproject.org/files/ENCFF055BIL/@@download/ENCFF055BIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/79b52e73-69f6-4d0f-9e07-b216cb610dde/ENCFF055BIL.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF660ZCZ bam bam unfiltered alignments GRCh38 ENCSR032BUQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF055BIL/, /files/ENCFF080CGR/, /files/ENCFF312FJB/, /files/ENCFF936TTT/ 6585992064 ENCODE Processing Pipeline 6cb2b638e066a08b9843737e42356993 https://www.encodeproject.org/files/ENCFF660ZCZ/@@download/ENCFF660ZCZ.bam released s3://encode-public/2020/05/15/d9eb3ca9-a734-4a44-8ecc-8a9aab271695/ENCFF660ZCZ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF719UKS bam bam alignments GRCh38 ENCSR032BUQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF080CGR/, /files/ENCFF055BIL/, /files/ENCFF936TTT/, /files/ENCFF312FJB/ 3953350167 ENCODE Processing Pipeline 296c30a054581e0a79fbdb80ae807190 https://www.encodeproject.org/files/ENCFF719UKS/@@download/ENCFF719UKS.bam released s3://encode-public/2020/05/15/915f32dd-cae4-4b1c-a242-2f1f7eedadde/ENCFF719UKS.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity ENCFF386DYL fastq fastq reads ENCSR972WGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4303/'], '@type': ['Target', 'Item'], 'name': 'FOXO4-human', 'label': 'FOXO4', '@id': '/targets/FOXO4-human/', 'title': 'FOXO4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcea64e3-021f-4291-9d55-f858f8200c4f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF020MZQ/ 2272542422 Michael Snyder, Stanford c944980e5e7761d3ff923d5dbccb7ae2 https://www.encodeproject.org/files/ENCFF386DYL/@@download/ENCFF386DYL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/f2ee3f97-4787-4b86-bd88-1c58300ac5ff/ENCFF386DYL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF020MZQ fastq fastq reads ENCSR972WGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4303/'], '@type': ['Target', 'Item'], 'name': 'FOXO4-human', 'label': 'FOXO4', '@id': '/targets/FOXO4-human/', 'title': 'FOXO4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcea64e3-021f-4291-9d55-f858f8200c4f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF386DYL/ 2070238473 Michael Snyder, Stanford 7b63f714fe4948520dc9add8cef9c29b https://www.encodeproject.org/files/ENCFF020MZQ/@@download/ENCFF020MZQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/ffa17048-2ae6-42b6-b10b-db86c60b5957/ENCFF020MZQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF802HUK bam bam unfiltered alignments GRCh38 ENCSR972WGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4303/'], '@type': ['Target', 'Item'], 'name': 'FOXO4-human', 'label': 'FOXO4', '@id': '/targets/FOXO4-human/', 'title': 'FOXO4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcea64e3-021f-4291-9d55-f858f8200c4f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF020MZQ/, /files/ENCFF386DYL/ 3899552678 ENCODE Processing Pipeline e71233786227a3a0420c6a122b157fc4 https://www.encodeproject.org/files/ENCFF802HUK/@@download/ENCFF802HUK.bam released s3://encode-public/2020/04/21/80bb3e5c-e449-4738-b0af-71e3f3354f0c/ENCFF802HUK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF729THQ bam bam alignments GRCh38 ENCSR972WGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4303/'], '@type': ['Target', 'Item'], 'name': 'FOXO4-human', 'label': 'FOXO4', '@id': '/targets/FOXO4-human/', 'title': 'FOXO4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcea64e3-021f-4291-9d55-f858f8200c4f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF020MZQ/, /files/ENCFF386DYL/ 2689548447 ENCODE Processing Pipeline 5c320dc87ccdd9e5fbb283cd7a85bd25 https://www.encodeproject.org/files/ENCFF729THQ/@@download/ENCFF729THQ.bam released s3://encode-public/2020/04/21/ff27f077-2114-42df-b9cd-5a0bf8977ed9/ENCFF729THQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF190PCJ bigWig bigWig read-depth normalized signal dm6 ENCSR627RCN Control ChIP-seq /fly-donors/ENCDO685VOP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31267/'], '@type': ['Target', 'Item'], 'name': 'CG2712-dmelanogaster', 'label': 'CG2712', '@id': '/targets/CG2712-dmelanogaster/', 'title': 'CG2712 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '45c571ac-1b71-4040-9ae3-9e7495c0658d', 'status': 'released'} dm3 X 2613526 2635217 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF004SMM/ 17843549 Kevin White, UChicago 5eafe8cc8306c615ee826d7d0f926dbe https://www.encodeproject.org/files/ENCFF190PCJ/@@download/ENCFF190PCJ.bigWig released s3://encode-public/2019/06/18/bd51f4f1-aedc-4c09-9d0b-04d7ec4ff4cc/ENCFF190PCJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF771OFH fastq fastq reads ENCSR627RCN Control ChIP-seq /fly-donors/ENCDO685VOP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31267/'], '@type': ['Target', 'Item'], 'name': 'CG2712-dmelanogaster', 'label': 'CG2712', '@id': '/targets/CG2712-dmelanogaster/', 'title': 'CG2712 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '45c571ac-1b71-4040-9ae3-9e7495c0658d', 'status': 'released'} dm3 X 2613526 2635217 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1093310703 Kevin White, UChicago 7c605e0a4ad81983b26c4ed95519f6a8 https://www.encodeproject.org/files/ENCFF771OFH/@@download/ENCFF771OFH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/c1bbfaff-132d-48cf-832a-aad4f5af879a/ENCFF771OFH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF004SMM bam bam alignments dm6 ENCSR627RCN Control ChIP-seq /fly-donors/ENCDO685VOP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31267/'], '@type': ['Target', 'Item'], 'name': 'CG2712-dmelanogaster', 'label': 'CG2712', '@id': '/targets/CG2712-dmelanogaster/', 'title': 'CG2712 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '45c571ac-1b71-4040-9ae3-9e7495c0658d', 'status': 'released'} dm3 X 2613526 2635217 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF771OFH/, /files/ENCFF479RCH/ 1479171357 Kevin White, UChicago acc2e04cd562ad0ed7c216d20e49af15 https://www.encodeproject.org/files/ENCFF004SMM/@@download/ENCFF004SMM.bam released s3://encode-public/2019/06/18/89a17f00-f793-4d63-99a2-ee4746350db8/ENCFF004SMM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF496THC bigWig bigWig signal of unique reads dm6 ENCSR627RCN Control ChIP-seq /fly-donors/ENCDO685VOP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31267/'], '@type': ['Target', 'Item'], 'name': 'CG2712-dmelanogaster', 'label': 'CG2712', '@id': '/targets/CG2712-dmelanogaster/', 'title': 'CG2712 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '45c571ac-1b71-4040-9ae3-9e7495c0658d', 'status': 'released'} dm3 X 2613526 2635217 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF004SMM/ 17856469 Kevin White, UChicago 7fb4b9faec96d06132ac63c994d9ab7a https://www.encodeproject.org/files/ENCFF496THC/@@download/ENCFF496THC.bigWig released s3://encode-public/2019/06/18/010910bb-cc37-48f3-bb6f-6139d2933e42/ENCFF496THC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF722PTJ fastq fastq reads ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 199088545 Michael Snyder, Stanford 271050d65d092868aae8de27bb4b3a19 https://www.encodeproject.org/files/ENCFF722PTJ/@@download/ENCFF722PTJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/cc1b76eb-8201-4a01-91e4-22cdb0fd6ff8/ENCFF722PTJ.fastq.gz ENCFF661UAY fastq fastq reads ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 3 3_1 32 single-ended 229173167 Michael Snyder, Stanford 2003e93386cb25de3ffd7eb4657c568a https://www.encodeproject.org/files/ENCFF661UAY/@@download/ENCFF661UAY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/01/14/e6da20cd-b26a-417d-900b-31dad8bbfde5/ENCFF661UAY.fastq.gz ENCFF256HYY bam bam alignments ce10 ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 32 /files/ENCFF722PTJ/, /files/ENCFF661UAY/, /files/ENCFF987UMF/ 547475086 Kevin White, UChicago a9c384841f9c7262a20abcf06477d60e https://www.encodeproject.org/files/ENCFF256HYY/@@download/ENCFF256HYY.bam released s3://encode-public/2016/10/18/286d7528-9bbd-4302-ae90-e736aed9a156/ENCFF256HYY.bam Lab custom ce10 archived ENCFF502XPR bam bam alignments ce11 ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 32 /files/ENCFF722PTJ/, /files/ENCFF661UAY/, /files/ENCFF586MOL/ 548061119 Kevin White, UChicago 25be1f7fc20519d2e63feea646f2b27d https://www.encodeproject.org/files/ENCFF502XPR/@@download/ENCFF502XPR.bam released s3://encode-public/2016/10/19/2c931afe-21fa-4638-8117-db9e1b521cfd/ENCFF502XPR.bam Lab custom ce11 released ENCFF130FAC bigWig bigWig signal of unique reads ce10 ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF256HYY/ 10004184 Kevin White, UChicago 33f00ce89bb5d925ae8bee7f17275144 https://www.encodeproject.org/files/ENCFF130FAC/@@download/ENCFF130FAC.bigWig released s3://encode-public/2016/10/20/824ce8e5-0562-443d-97c9-4c20ea81c03f/ENCFF130FAC.bigWig Lab custom ce10 archived ENCFF866TWT bigWig bigWig read-depth normalized signal ce10 ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF256HYY/ 10068155 Kevin White, UChicago 3e17763225b3153d8ca8df0170a373c1 https://www.encodeproject.org/files/ENCFF866TWT/@@download/ENCFF866TWT.bigWig released s3://encode-public/2016/10/20/561633ef-6feb-4879-b6d3-327fdffab2a0/ENCFF866TWT.bigWig Lab custom ce10 archived ENCFF475GNF bigWig bigWig signal of unique reads ce11 ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF502XPR/ 10001067 Kevin White, UChicago 1b4e7b15668fb7b08a739fba48213e46 https://www.encodeproject.org/files/ENCFF475GNF/@@download/ENCFF475GNF.bigWig released s3://encode-public/2016/10/21/a18e09e2-196d-4066-868a-62cb2fb6ac4b/ENCFF475GNF.bigWig Lab custom ce11 released ENCFF172CTE bigWig bigWig read-depth normalized signal ce11 ENCSR239PCG Control ChIP-seq /worm-donors/ENCDO657AJP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF502XPR/ 10062757 Kevin White, UChicago e7bb656f27c47c7c2d1a6c0790a48cff https://www.encodeproject.org/files/ENCFF172CTE/@@download/ENCFF172CTE.bigWig released s3://encode-public/2016/10/21/f835a1d6-4e23-45d0-be50-db9e27ef9baa/ENCFF172CTE.bigWig Lab custom ce11 released ENCFF313GAJ fastq fastq reads ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 86759162 Michael Snyder, Stanford 103c50415fe23c7a87d0ef87b1cce6c3 https://www.encodeproject.org/files/ENCFF313GAJ/@@download/ENCFF313GAJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c02ce58e-2c7a-4680-8b63-a67b53e2fbb6/ENCFF313GAJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF717STM fastq fastq reads ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 88265385 Michael Snyder, Stanford edac7ffbee7dda528fdde14a8f94c37b https://www.encodeproject.org/files/ENCFF717STM/@@download/ENCFF717STM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8a1eceff-6901-4db5-822d-b24add247659/ENCFF717STM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF931FXQ fastq fastq reads ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 74162887 Michael Snyder, Stanford 450e55c978019cdf7dba1b37bc71c0f7 https://www.encodeproject.org/files/ENCFF931FXQ/@@download/ENCFF931FXQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/3d7085c5-0893-49b2-9d84-4c1cc12c2365/ENCFF931FXQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF436ITG fastq fastq reads ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 78205544 Michael Snyder, Stanford 8d8abfa8ce3e5b4f76a10f2f169d25cb https://www.encodeproject.org/files/ENCFF436ITG/@@download/ENCFF436ITG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/077b0e54-2b3f-4751-a86f-9783874c963b/ENCFF436ITG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF212KBM bam bam alignments ce10 ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF717STM/, /files/ENCFF313GAJ/, /files/ENCFF436ITG/, /files/ENCFF931FXQ/, /files/ENCFF987UMF/ 423992755 Kevin White, UChicago ec1c097c29d9f06efc7c6f871aaf4427 https://www.encodeproject.org/files/ENCFF212KBM/@@download/ENCFF212KBM.bam released s3://encode-public/2016/10/18/94f09a53-e2cc-4eb8-a773-5209f69712cd/ENCFF212KBM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF324VYG bam bam alignments ce11 ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF717STM/, /files/ENCFF313GAJ/, /files/ENCFF436ITG/, /files/ENCFF931FXQ/, /files/ENCFF586MOL/ 424462035 Kevin White, UChicago 056c536f6306b9d5df2e5317cc967817 https://www.encodeproject.org/files/ENCFF324VYG/@@download/ENCFF324VYG.bam released s3://encode-public/2016/10/18/ca0b9ace-29af-4a1c-97bd-429702de9a47/ENCFF324VYG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF967WIW bigWig bigWig signal of unique reads ce10 ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF212KBM/ 10100059 Kevin White, UChicago e8ec40776a7c69b92b9793190f6e9489 https://www.encodeproject.org/files/ENCFF967WIW/@@download/ENCFF967WIW.bigWig released s3://encode-public/2016/10/20/279beba3-bdc6-458b-ba76-576da35b9a92/ENCFF967WIW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF877BHD bigWig bigWig read-depth normalized signal ce10 ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF212KBM/ 10079298 Kevin White, UChicago be6e278cf60d9e6069c28d1da38e719c https://www.encodeproject.org/files/ENCFF877BHD/@@download/ENCFF877BHD.bigWig released s3://encode-public/2016/10/20/2eab8dce-4114-4750-885c-59272c214827/ENCFF877BHD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF707RGL bigWig bigWig signal of unique reads ce11 ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF324VYG/ 10099470 Kevin White, UChicago c109977fb723aaccfdfd062da9e84c22 https://www.encodeproject.org/files/ENCFF707RGL/@@download/ENCFF707RGL.bigWig released s3://encode-public/2016/10/20/57fb148c-980a-4f01-9505-1ea66c0db282/ENCFF707RGL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF209IXG bigWig bigWig read-depth normalized signal ce11 ENCSR065RRX Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF324VYG/ 10075450 Kevin White, UChicago de86ec05ad3a2a2b4013253af57666ff https://www.encodeproject.org/files/ENCFF209IXG/@@download/ENCFF209IXG.bigWig released s3://encode-public/2016/10/20/ef20b7f8-7557-4b57-9db3-d662259cc5cf/ENCFF209IXG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF970WCF fastq fastq reads ENCSR615QEB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1311'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26298/'], '@type': ['Target', 'Item'], 'name': 'EHF-human', 'label': 'EHF', '@id': '/targets/EHF-human/', 'title': 'EHF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76612f65-137a-44fa-931a-5934b5212f4e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF369VJX/ 2462679625 Michael Snyder, Stanford 79f6da5efd1d42b79ce861b5b8281207 SRA:SRR14107661 https://www.encodeproject.org/files/ENCFF970WCF/@@download/ENCFF970WCF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/a7470540-3251-485b-bdf0-6edae5b2f236/ENCFF970WCF.fastq.gz ENCFF369VJX fastq fastq reads ENCSR615QEB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1311'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26298/'], '@type': ['Target', 'Item'], 'name': 'EHF-human', 'label': 'EHF', '@id': '/targets/EHF-human/', 'title': 'EHF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76612f65-137a-44fa-931a-5934b5212f4e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF970WCF/ 2669037351 Michael Snyder, Stanford 1fd0549f165aaca204c02e4ce16d84af SRA:SRR14107661 https://www.encodeproject.org/files/ENCFF369VJX/@@download/ENCFF369VJX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/8cc82541-364e-4088-8c00-1cb92d27d4d5/ENCFF369VJX.fastq.gz ENCFF922YVB bam bam unfiltered alignments GRCh38 ENCSR615QEB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1311'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26298/'], '@type': ['Target', 'Item'], 'name': 'EHF-human', 'label': 'EHF', '@id': '/targets/EHF-human/', 'title': 'EHF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76612f65-137a-44fa-931a-5934b5212f4e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF970WCF/, /files/ENCFF369VJX/ 5073699444 ENCODE Processing Pipeline 76783e49acb3fb7b94380ed4b4b2e7a9 https://www.encodeproject.org/files/ENCFF922YVB/@@download/ENCFF922YVB.bam released s3://encode-public/2020/04/21/521e54e8-ee19-444d-92a6-646819f4b8c2/ENCFF922YVB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF255SHS bam bam alignments GRCh38 ENCSR615QEB Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1311'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/26298/'], '@type': ['Target', 'Item'], 'name': 'EHF-human', 'label': 'EHF', '@id': '/targets/EHF-human/', 'title': 'EHF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76612f65-137a-44fa-931a-5934b5212f4e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF970WCF/, /files/ENCFF369VJX/ 4127272438 ENCODE Processing Pipeline 06d0affbcec6116768eb5fc7c91af1e8 https://www.encodeproject.org/files/ENCFF255SHS/@@download/ENCFF255SHS.bam released s3://encode-public/2020/04/21/58c6409a-e105-44bd-850d-72650ed91cc1/ENCFF255SHS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF126ZEQ fastq fastq reads ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF931XXU/ 2321971458 Richard Myers, HAIB 57cd2388f5df1e6b88f5c4768073048a SRA:SRR6214391 https://www.encodeproject.org/files/ENCFF126ZEQ/@@download/ENCFF126ZEQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/6d901d7e-ba3d-459c-b29a-a60495e6bced/ENCFF126ZEQ.fastq.gz ENCFF931XXU fastq fastq reads ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF126ZEQ/ 2437904820 Richard Myers, HAIB 97bab8bb19b195832c9ee064979c5954 SRA:SRR6214391 https://www.encodeproject.org/files/ENCFF931XXU/@@download/ENCFF931XXU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/9886356d-a993-4835-804e-35aef3d3831f/ENCFF931XXU.fastq.gz ENCFF295NCW bam bam alignments hg19 ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF126ZEQ/, /files/ENCFF931XXU/, /files/ENCFF807MUK/ 4025496571 ENCODE Processing Pipeline 92c7a9e5cc928399c9e53f3e37f7916b https://www.encodeproject.org/files/ENCFF295NCW/@@download/ENCFF295NCW.bam released s3://encode-public/2017/02/02/d4c25c19-a322-4d74-98de-c7f5d2a232e6/ENCFF295NCW.bam ENCODE3 hg19 archived ENCFF751KKY bam bam unfiltered alignments hg19 ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF126ZEQ/, /files/ENCFF931XXU/, /files/ENCFF807MUK/ 5710985095 ENCODE Processing Pipeline 95b4b334877a118935f7048379ae8433 https://www.encodeproject.org/files/ENCFF751KKY/@@download/ENCFF751KKY.bam released s3://encode-public/2017/02/02/1d0737f8-f3d6-480d-a356-db71124fa137/ENCFF751KKY.bam ENCODE3 hg19 archived ENCFF461EUQ bam bam unfiltered alignments GRCh38 ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF126ZEQ/, /files/ENCFF931XXU/, /files/ENCFF643CGH/ 5734422877 ENCODE Processing Pipeline 2267717f538b18c1ab87f8fb0ab59a32 https://www.encodeproject.org/files/ENCFF461EUQ/@@download/ENCFF461EUQ.bam released s3://encode-public/2017/02/02/1b01d1f7-43eb-48a1-b94f-6323227e467f/ENCFF461EUQ.bam ENCODE3 GRCh38 archived ENCFF842EMA bam bam alignments GRCh38 ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF126ZEQ/, /files/ENCFF931XXU/, /files/ENCFF643CGH/ 4029431201 ENCODE Processing Pipeline 66cc89758eab5c84e73fbc21d870ec6c https://www.encodeproject.org/files/ENCFF842EMA/@@download/ENCFF842EMA.bam released s3://encode-public/2017/02/02/36a12cf5-b9ef-470b-988b-3a1b79224995/ENCFF842EMA.bam ENCODE3 GRCh38 archived ENCFF515ITT bam bam unfiltered alignments GRCh38 ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF126ZEQ/, /files/ENCFF931XXU/ 5751672300 ENCODE Processing Pipeline 8f46a9c07f5cba66529986e6806f396a https://www.encodeproject.org/files/ENCFF515ITT/@@download/ENCFF515ITT.bam released s3://encode-public/2020/06/06/374b960f-3cd4-468c-a662-82d9a590a4b8/ENCFF515ITT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF929SKU bam bam alignments GRCh38 ENCSR889VXP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF126ZEQ/, /files/ENCFF931XXU/ 3827114877 ENCODE Processing Pipeline 48b7d464a024c49015c51c3c96858c1e https://www.encodeproject.org/files/ENCFF929SKU/@@download/ENCFF929SKU.bam released s3://encode-public/2020/06/06/fe66ad03-2df0-45ff-ac56-5df8219cc0c5/ENCFF929SKU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF680PYF fastq fastq reads ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 153605300 Michael Snyder, Stanford 391ef7509505e20176a4f3df14cb31a1 https://www.encodeproject.org/files/ENCFF680PYF/@@download/ENCFF680PYF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/296608ed-4446-4847-819e-713603892348/ENCFF680PYF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF367WTC fastq fastq reads ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 182175796 Michael Snyder, Stanford 621c9f6c41649e535e45719a4fe56c19 https://www.encodeproject.org/files/ENCFF367WTC/@@download/ENCFF367WTC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b1227998-2a14-4975-932b-8b713db521e5/ENCFF367WTC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF427VPT bam bam alignments ce10 ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF680PYF/, /files/ENCFF367WTC/, /files/ENCFF987UMF/ 426260199 Kevin White, UChicago de74ebcfc39bf6cc1f6f1d0393fc0164 https://www.encodeproject.org/files/ENCFF427VPT/@@download/ENCFF427VPT.bam released s3://encode-public/2016/10/18/9e17e176-d193-4767-89dd-355b196229c7/ENCFF427VPT.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF261NIW bam bam alignments ce11 ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF680PYF/, /files/ENCFF367WTC/, /files/ENCFF586MOL/ 426663017 Kevin White, UChicago f280a8a12d9f7372a6ea89c932388f2c https://www.encodeproject.org/files/ENCFF261NIW/@@download/ENCFF261NIW.bam released s3://encode-public/2016/10/18/f626b3be-1308-4dad-81c0-a13cf3a42eda/ENCFF261NIW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF458JMR bigWig bigWig read-depth normalized signal ce10 ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF427VPT/ 9967654 Kevin White, UChicago f3b180f121b4af4dc6141c6393033db7 https://www.encodeproject.org/files/ENCFF458JMR/@@download/ENCFF458JMR.bigWig released s3://encode-public/2016/10/20/26ab827b-5899-4109-ac16-2cda160db65c/ENCFF458JMR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF111OKQ bigWig bigWig signal of unique reads ce10 ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF427VPT/ 10022766 Kevin White, UChicago 1bb0f318abf1d364199bb09e73c56416 https://www.encodeproject.org/files/ENCFF111OKQ/@@download/ENCFF111OKQ.bigWig released s3://encode-public/2016/10/20/9a056713-ccbd-4ced-bf97-182601e9d646/ENCFF111OKQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF980MLJ bigWig bigWig signal of unique reads ce11 ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF261NIW/ 10022420 Kevin White, UChicago 09b5e72817db5f1128d9a6deba3abaef https://www.encodeproject.org/files/ENCFF980MLJ/@@download/ENCFF980MLJ.bigWig released s3://encode-public/2016/10/20/fb35d273-c268-41fb-a15f-b4d72b47849f/ENCFF980MLJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF648AMY bigWig bigWig read-depth normalized signal ce11 ENCSR034DCF Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF261NIW/ 9967656 Kevin White, UChicago 3f84ae14162527f9300f4912aeef5eed https://www.encodeproject.org/files/ENCFF648AMY/@@download/ENCFF648AMY.bigWig released s3://encode-public/2016/10/20/ed2f8cc1-cb58-4bd2-913a-80bf0e0af18c/ENCFF648AMY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF331BAZ bam bam unfiltered alignments hg19 ENCSR476TKW Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF654JMO/, /files/ENCFF807MUK/ 2581514070 ENCODE Processing Pipeline b094338f0897735920753fa3c2f55c92 https://www.encodeproject.org/files/ENCFF331BAZ/@@download/ENCFF331BAZ.bam released s3://encode-public/2018/02/22/2022fbf0-c25a-468c-97b7-1faff47838fb/ENCFF331BAZ.bam ENCODE3 hg19 archived ENCFF654JMO fastq fastq reads ENCSR476TKW Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_1 50 single-ended 2397985972 Richard Myers, HAIB 23ef48345ad6d67156cb428a4db0644a https://www.encodeproject.org/files/ENCFF654JMO/@@download/ENCFF654JMO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/b5bd33c9-d258-4137-a7e6-b67a25067277/ENCFF654JMO.fastq.gz ENCFF929OSU bam bam alignments hg19 ENCSR476TKW Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF654JMO/, /files/ENCFF807MUK/ 1957947372 ENCODE Processing Pipeline 9cce335a4699d7c20571563052cbc585 https://www.encodeproject.org/files/ENCFF929OSU/@@download/ENCFF929OSU.bam released s3://encode-public/2015/11/17/68ce9c82-c8d8-4c31-b56d-4f04f4af2d9f/ENCFF929OSU.bam ENCODE3 hg19 archived ENCFF824RWI bam bam unfiltered alignments GRCh38 ENCSR476TKW Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF654JMO/, /files/ENCFF643CGH/ 2591838397 ENCODE Processing Pipeline b04cd78c85221f2b2881bd79e0d6b70e https://www.encodeproject.org/files/ENCFF824RWI/@@download/ENCFF824RWI.bam released s3://encode-public/2016/05/06/97124e6e-9864-4729-ba55-c698ffec10db/ENCFF824RWI.bam ENCODE3 GRCh38 archived ENCFF506QEL bam bam alignments GRCh38 ENCSR476TKW Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF654JMO/, /files/ENCFF643CGH/ 1958574656 ENCODE Processing Pipeline a86c1c1a3fbcc4eb0278b2e8125ad87a https://www.encodeproject.org/files/ENCFF506QEL/@@download/ENCFF506QEL.bam released s3://encode-public/2016/05/06/9d8f1a67-a76c-4765-9aed-4bb7c90a2664/ENCFF506QEL.bam ENCODE3 GRCh38 archived ENCFF059LCN bam bam unfiltered alignments GRCh38 ENCSR476TKW Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF654JMO/ 2562834065 ENCODE Processing Pipeline 21cfb3626f2baaf199a050dba8ebce72 https://www.encodeproject.org/files/ENCFF059LCN/@@download/ENCFF059LCN.bam released s3://encode-public/2020/06/06/4c018d3d-0623-4723-b633-5c66b1a7c895/ENCFF059LCN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF327RJS bam bam alignments GRCh38 ENCSR476TKW Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF654JMO/ 2038507016 ENCODE Processing Pipeline 4cc79ea9440fea51310974e41bbd9609 https://www.encodeproject.org/files/ENCFF327RJS/@@download/ENCFF327RJS.bam released s3://encode-public/2020/06/06/414722de-67a0-4f70-a08e-d971d1152f52/ENCFF327RJS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF807UZO fastq fastq reads ENCSR823HRT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF627DSW/ 2635348667 Michael Snyder, Stanford 7581d018d7ea29e690c7d674bf4bc75e SRA:SRR14638523 https://www.encodeproject.org/files/ENCFF807UZO/@@download/ENCFF807UZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/cf97e372-f671-4ea0-bc44-d04d026eb342/ENCFF807UZO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF627DSW fastq fastq reads ENCSR823HRT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF807UZO/ 2762814152 Michael Snyder, Stanford b4e13a12208985bf5c23924a5decc440 SRA:SRR14638523 https://www.encodeproject.org/files/ENCFF627DSW/@@download/ENCFF627DSW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/6ab4e106-808b-4d83-8a9c-7c221e30ad91/ENCFF627DSW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF004INR bam bam unfiltered alignments GRCh38 ENCSR823HRT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF807UZO/, /files/ENCFF627DSW/ 4604257657 ENCODE Processing Pipeline aefdee620d2447a58019dc58598d54e4 https://www.encodeproject.org/files/ENCFF004INR/@@download/ENCFF004INR.bam released s3://encode-public/2020/04/21/3a48792a-2c8f-4afa-bbe8-c1ed1defec6f/ENCFF004INR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF764DNJ bam bam alignments GRCh38 ENCSR823HRT Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF807UZO/, /files/ENCFF627DSW/ 2493750740 ENCODE Processing Pipeline f870449b8b8ba1ee562e45dfa118f4f9 https://www.encodeproject.org/files/ENCFF764DNJ/@@download/ENCFF764DNJ.bam released s3://encode-public/2020/04/21/a3ac1f77-2bfa-409f-bd31-636452b653b6/ENCFF764DNJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF017WFV fastq fastq reads ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 121401790 Michael Snyder, Stanford 03673e02c7ce4d7d4d81ea202f418079 https://www.encodeproject.org/files/ENCFF017WFV/@@download/ENCFF017WFV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/1bd24362-cba8-4e02-9224-648af2213c9c/ENCFF017WFV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF735XZK fastq fastq reads ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 122208025 Michael Snyder, Stanford 355fbd680dfd4739afb1861f75aa3ff5 https://www.encodeproject.org/files/ENCFF735XZK/@@download/ENCFF735XZK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/2915dc2e-4cc8-48cf-ad2f-5756d4532861/ENCFF735XZK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF324VQV bam bam alignments ce10 ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF017WFV/, /files/ENCFF735XZK/, /files/ENCFF987UMF/ 323495161 Kevin White, UChicago 97c0a22129010a189a3a5471a9a0ce3e https://www.encodeproject.org/files/ENCFF324VQV/@@download/ENCFF324VQV.bam released s3://encode-public/2017/04/27/eb32f6aa-df51-4adb-a218-01950701e4a5/ENCFF324VQV.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF928CVW bam bam alignments ce11 ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF017WFV/, /files/ENCFF735XZK/, /files/ENCFF586MOL/ 323858018 Kevin White, UChicago f62df5907e0cced03a5d4512c08e432b https://www.encodeproject.org/files/ENCFF928CVW/@@download/ENCFF928CVW.bam released s3://encode-public/2017/04/27/5a47e6f1-6f21-4de3-9a6a-e6b326e9d45a/ENCFF928CVW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF858KOA bigWig bigWig signal of unique reads ce10 ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF324VQV/ 10085642 Kevin White, UChicago 3c6e9efb7d9233d28a31e2513fa69f0f https://www.encodeproject.org/files/ENCFF858KOA/@@download/ENCFF858KOA.bigWig released s3://encode-public/2017/04/29/f7ace607-44b8-41dd-94d9-6eef0f3c1531/ENCFF858KOA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF843LQV bigWig bigWig read-depth normalized signal ce10 ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF324VQV/ 10053476 Kevin White, UChicago 92a039a42fbeaa0cf8b0e7195c36e496 https://www.encodeproject.org/files/ENCFF843LQV/@@download/ENCFF843LQV.bigWig released s3://encode-public/2017/04/29/1a4b4592-88d3-43ef-a616-0588cc0aeba9/ENCFF843LQV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF463AHH bigWig bigWig signal of unique reads ce11 ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF928CVW/ 10088192 Kevin White, UChicago 6673a1f06147d1fea5304e21d5f6518e https://www.encodeproject.org/files/ENCFF463AHH/@@download/ENCFF463AHH.bigWig released s3://encode-public/2017/04/29/f6adb78b-8c60-4dc0-a9bb-de508f15c074/ENCFF463AHH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF304FYD bigWig bigWig read-depth normalized signal ce11 ENCSR921YEJ Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF928CVW/ 10057692 Kevin White, UChicago 6d6a391cbf0eb8c65cf8bce4f71ea30d https://www.encodeproject.org/files/ENCFF304FYD/@@download/ENCFF304FYD.bigWig released s3://encode-public/2017/04/29/0a98a608-ed03-447d-a058-c28fc0cde6d9/ENCFF304FYD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF873RFJ fastq fastq reads ENCSR524HLR Control ChIP-seq /fly-donors/ENCDO453RFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37767/'], '@type': ['Target', 'Item'], 'name': 'Ssrp-dmelanogaster', 'label': 'Ssrp', '@id': '/targets/Ssrp-dmelanogaster/', 'title': 'Ssrp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0fbd6c91-3f79-4b75-a75a-16ca616b445e', 'status': 'released'} dm3 2R 19693883 19696518 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 953046742 Kevin White, UChicago 5a02284659ed98df5e0399b7f01dd229 https://www.encodeproject.org/files/ENCFF873RFJ/@@download/ENCFF873RFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/baabf90e-63e5-4eb4-ac53-a2dbed8d2ec2/ENCFF873RFJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF926AZX bam bam alignments dm6 ENCSR524HLR Control ChIP-seq /fly-donors/ENCDO453RFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37767/'], '@type': ['Target', 'Item'], 'name': 'Ssrp-dmelanogaster', 'label': 'Ssrp', '@id': '/targets/Ssrp-dmelanogaster/', 'title': 'Ssrp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0fbd6c91-3f79-4b75-a75a-16ca616b445e', 'status': 'released'} dm3 2R 19693883 19696518 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF873RFJ/, /files/ENCFF479RCH/ 1289472120 Kevin White, UChicago 5e5252af847642abe72ce1d0f29fae96 https://www.encodeproject.org/files/ENCFF926AZX/@@download/ENCFF926AZX.bam released s3://encode-public/2018/12/07/732dc15d-4905-46a9-83a9-6905d9965b3e/ENCFF926AZX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF504IIV bigWig bigWig signal of unique reads dm6 ENCSR524HLR Control ChIP-seq /fly-donors/ENCDO453RFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37767/'], '@type': ['Target', 'Item'], 'name': 'Ssrp-dmelanogaster', 'label': 'Ssrp', '@id': '/targets/Ssrp-dmelanogaster/', 'title': 'Ssrp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0fbd6c91-3f79-4b75-a75a-16ca616b445e', 'status': 'released'} dm3 2R 19693883 19696518 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF926AZX/ 17787174 Kevin White, UChicago 9bbaab86ccbd86189d874ec8bf82c86f https://www.encodeproject.org/files/ENCFF504IIV/@@download/ENCFF504IIV.bigWig released s3://encode-public/2018/12/10/8f1ed262-89cb-45d9-9133-243ca6403846/ENCFF504IIV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF880WBV bigWig bigWig read-depth normalized signal dm6 ENCSR524HLR Control ChIP-seq /fly-donors/ENCDO453RFH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37767/'], '@type': ['Target', 'Item'], 'name': 'Ssrp-dmelanogaster', 'label': 'Ssrp', '@id': '/targets/Ssrp-dmelanogaster/', 'title': 'Ssrp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0fbd6c91-3f79-4b75-a75a-16ca616b445e', 'status': 'released'} dm3 2R 19693883 19696518 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF926AZX/ 17849848 Kevin White, UChicago cd00ace3aaf1c375fc453d6330d1cee3 https://www.encodeproject.org/files/ENCFF880WBV/@@download/ENCFF880WBV.bigWig released s3://encode-public/2018/12/10/52778d74-80e3-4cad-a408-25e1d9a25f2d/ENCFF880WBV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF282OJG fastq fastq reads ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF330ZZV/ 2574414825 Michael Snyder, Stanford 4df3d4fa504cd9cee3a9ae6346b4434d SRA:SRR6213253 https://www.encodeproject.org/files/ENCFF282OJG/@@download/ENCFF282OJG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/06/96b651bc-ab19-44d6-94c8-bfffe5137170/ENCFF282OJG.fastq.gz mild to moderate bottlenecking ENCFF330ZZV fastq fastq reads ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF282OJG/ 2182559911 Michael Snyder, Stanford a3c248667dcd06cc43926f0b37aeedb7 SRA:SRR6213253 https://www.encodeproject.org/files/ENCFF330ZZV/@@download/ENCFF330ZZV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/06/171d7b73-c661-49e5-897e-8e08c5a5210e/ENCFF330ZZV.fastq.gz mild to moderate bottlenecking ENCFF355KWN bam bam unfiltered alignments hg19 ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF282OJG/, /files/ENCFF330ZZV/ 4746603726 ENCODE Processing Pipeline d35415bc812e757495a230932fc56720 https://www.encodeproject.org/files/ENCFF355KWN/@@download/ENCFF355KWN.bam released s3://encode-public/2016/12/10/411e3228-8a22-4674-b5b6-ba5f4757839a/ENCFF355KWN.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF792NXA bam bam alignments hg19 ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF282OJG/, /files/ENCFF330ZZV/ 3860610064 ENCODE Processing Pipeline b5fd17213a111ab0650c69cebb612647 https://www.encodeproject.org/files/ENCFF792NXA/@@download/ENCFF792NXA.bam released s3://encode-public/2016/12/10/aa56c857-cabd-483b-be8b-beef275310c4/ENCFF792NXA.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF666SHQ bam bam unfiltered alignments GRCh38 ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF282OJG/, /files/ENCFF330ZZV/ 4757304708 ENCODE Processing Pipeline 1d3a4af969bd5293f69f46b1b567e05a https://www.encodeproject.org/files/ENCFF666SHQ/@@download/ENCFF666SHQ.bam released s3://encode-public/2016/12/10/311a14ca-93bb-4220-9665-a88c3b8059f4/ENCFF666SHQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF563SSP bam bam alignments GRCh38 ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF282OJG/, /files/ENCFF330ZZV/ 3865806740 ENCODE Processing Pipeline c0081d4f4ac80bcab9bae93951d7a1f5 https://www.encodeproject.org/files/ENCFF563SSP/@@download/ENCFF563SSP.bam released s3://encode-public/2016/12/10/6f054c70-db84-4507-9f67-6a6a3a1ca749/ENCFF563SSP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF679EYM bam bam unfiltered alignments GRCh38 ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF330ZZV/, /files/ENCFF282OJG/ 4740411057 ENCODE Processing Pipeline b3be1737575d148c246c59c9442843d5 https://www.encodeproject.org/files/ENCFF679EYM/@@download/ENCFF679EYM.bam released s3://encode-public/2020/06/02/554020cc-9bae-43e2-8cb0-ae0247c9b50a/ENCFF679EYM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF149DIN bam bam alignments GRCh38 ENCSR628RAE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF330ZZV/, /files/ENCFF282OJG/ 3809451295 ENCODE Processing Pipeline 1a4fadfca18682edc0250607c695ee97 https://www.encodeproject.org/files/ENCFF149DIN/@@download/ENCFF149DIN.bam released s3://encode-public/2020/06/02/e38958b4-bccf-4b22-b662-357af7e1488e/ENCFF149DIN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF511ESM fastq fastq reads ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2340580265 Bing Ren, UCSD 26da35680549c6547a13e7f83a35f84a SRA:SRR3651971 https://www.encodeproject.org/files/ENCFF511ESM/@@download/ENCFF511ESM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/db53f1bf-6e37-49e4-9f24-0e10b4d148fc/ENCFF511ESM.fastq.gz inconsistent platforms ENCFF634EPK fastq fastq reads ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2595387175 Bing Ren, UCSD a05827b3e79044ef0c68f7b78811303e SRA:SRR3651974 https://www.encodeproject.org/files/ENCFF634EPK/@@download/ENCFF634EPK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/89c468a5-6603-4f5a-b58f-8850e32ecd75/ENCFF634EPK.fastq.gz inconsistent platforms ENCFF949WTQ bam bam alignments mm10-minimal ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF634EPK/ 2150625488 ENCODE Processing Pipeline 6aab84b0de3896ffd6e0dfe92cf7f4ea https://www.encodeproject.org/files/ENCFF949WTQ/@@download/ENCFF949WTQ.bam archived s3://encode-public/2015/10/31/f08ff125-46fc-4ac0-b54a-03fad8461adf/ENCFF949WTQ.bam inconsistent platforms ENCFF029DGH bam bam alignments mm10-minimal ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF511ESM/ 1959300123 ENCODE Processing Pipeline 3a56458f06ef83f43f3f37e0ecea8214 https://www.encodeproject.org/files/ENCFF029DGH/@@download/ENCFF029DGH.bam archived s3://encode-public/2015/10/31/39c6b1aa-97bd-49a8-9c7e-c78bebce3668/ENCFF029DGH.bam inconsistent platforms ENCFF263OPF fastq fastq reads ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 434309982 Bing Ren, UCSD a2008255c9f09d989a3f497d2d119a31 SRA:SRR3651972 https://www.encodeproject.org/files/ENCFF263OPF/@@download/ENCFF263OPF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/45698f02-4e8f-437d-9dc7-5c1c2e22795e/ENCFF263OPF.fastq.gz inconsistent platforms ENCFF347ALK fastq fastq reads ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 342042940 Bing Ren, UCSD 2fde898cbb0056f299b777e470d496d0 SRA:SRR3651975 https://www.encodeproject.org/files/ENCFF347ALK/@@download/ENCFF347ALK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/6e7cb685-842e-44a2-8cda-fba61bfcee3f/ENCFF347ALK.fastq.gz inconsistent platforms ENCFF146GFU fastq fastq reads ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 206484792 Bing Ren, UCSD 45f7cb1acaa28d801cd79005ee177646 SRA:SRR3651976 https://www.encodeproject.org/files/ENCFF146GFU/@@download/ENCFF146GFU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/2c49c5c1-4a18-4b86-8850-6d1af68553ae/ENCFF146GFU.fastq.gz inconsistent platforms ENCFF145WXV fastq fastq reads ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 509071456 Bing Ren, UCSD 539d6b818167deb623566c7a72fefd9e SRA:SRR3651973 https://www.encodeproject.org/files/ENCFF145WXV/@@download/ENCFF145WXV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/d107a1a2-abf4-445f-93d0-926a0623f55d/ENCFF145WXV.fastq.gz inconsistent platforms ENCFF079JAD bam bam alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF511ESM/, /files/ENCFF145WXV/, /files/ENCFF263OPF/ 2914012161 ENCODE Processing Pipeline 5e112f0822adcdd9b28bd0221fdae1b8 https://www.encodeproject.org/files/ENCFF079JAD/@@download/ENCFF079JAD.bam released s3://encode-public/2016/07/18/c736dabd-7a08-4f21-a0f8-9093713c754f/ENCFF079JAD.bam ENCODE3 mm10 archived inconsistent platforms ENCFF031BIV bam bam unfiltered alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF018NEO/, /files/ENCFF347ALK/, /files/ENCFF634EPK/, /files/ENCFF146GFU/ 4006242959 ENCODE Processing Pipeline b8fce65ee01fe32b414f4066396b1ebb https://www.encodeproject.org/files/ENCFF031BIV/@@download/ENCFF031BIV.bam released s3://encode-public/2016/07/18/de9a048e-7c1e-4722-8c45-fdb7e511a17b/ENCFF031BIV.bam ENCODE3 mm10 archived inconsistent platforms ENCFF697KWR bam bam unfiltered alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF018NEO/, /files/ENCFF511ESM/, /files/ENCFF145WXV/, /files/ENCFF263OPF/ 4244634376 ENCODE Processing Pipeline 26c458114afec773f1a5586eb2fbdc26 https://www.encodeproject.org/files/ENCFF697KWR/@@download/ENCFF697KWR.bam released s3://encode-public/2016/07/18/bef70dd3-35ae-45de-af89-c841208456ef/ENCFF697KWR.bam ENCODE3 mm10 archived inconsistent platforms ENCFF269JKO bam bam alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF018NEO/, /files/ENCFF347ALK/, /files/ENCFF634EPK/, /files/ENCFF146GFU/ 2720002082 ENCODE Processing Pipeline fd19c3b169c10cd3773560bba224b9a8 https://www.encodeproject.org/files/ENCFF269JKO/@@download/ENCFF269JKO.bam released s3://encode-public/2016/07/18/5c48f042-272b-44bf-961e-2d1486a91363/ENCFF269JKO.bam ENCODE3 mm10 archived inconsistent platforms ENCFF274QKX bam bam unfiltered alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF309GLL/, /files/ENCFF634EPK/, /files/ENCFF146GFU/, /files/ENCFF347ALK/ 3910842844 ENCODE Processing Pipeline 568d46c3595976fc9bde1d2f44f90d6b https://www.encodeproject.org/files/ENCFF274QKX/@@download/ENCFF274QKX.bam released s3://encode-public/2020/10/08/d6993be3-a72b-4fd3-8b7d-3ce5bb4aaff5/ENCFF274QKX.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF096XGP bam bam unfiltered alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF309GLL/, /files/ENCFF145WXV/, /files/ENCFF263OPF/, /files/ENCFF511ESM/ 4127650639 ENCODE Processing Pipeline fb57f37317d3f46a4700e5a87d3e8edb https://www.encodeproject.org/files/ENCFF096XGP/@@download/ENCFF096XGP.bam released s3://encode-public/2020/10/08/dc16f7a8-e890-455c-90c1-3e0ea980d9f8/ENCFF096XGP.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF207RAF bam bam alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 50 /files/ENCFF309GLL/, /files/ENCFF145WXV/, /files/ENCFF263OPF/, /files/ENCFF511ESM/ 2993888739 ENCODE Processing Pipeline 40501cd0b26f1b8c4696f6f4da9c6e93 https://www.encodeproject.org/files/ENCFF207RAF/@@download/ENCFF207RAF.bam released s3://encode-public/2020/10/08/9e7f1e47-ec19-439f-84d1-59d9782938a9/ENCFF207RAF.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF578IKJ bam bam alignments mm10 ENCSR371AKO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF309GLL/, /files/ENCFF634EPK/, /files/ENCFF146GFU/, /files/ENCFF347ALK/ 2796588574 ENCODE Processing Pipeline 28f33f25f17312427dd469299707c39a https://www.encodeproject.org/files/ENCFF578IKJ/@@download/ENCFF578IKJ.bam released s3://encode-public/2020/10/08/ad52b859-fb1c-4c01-8e39-25caaa16b3c9/ENCFF578IKJ.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF281XYL fastq fastq reads ENCSR840VLX Control ChIP-seq /fly-donors/ENCDO152XKX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34727/'], '@type': ['Target', 'Item'], 'name': 'CG15479-dmelanogaster', 'label': 'CG15479', '@id': '/targets/CG15479-dmelanogaster/', 'title': 'CG15479 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bb035d68-b6bb-4f60-a99c-f725a8671e30', 'status': 'released'} dm3 2L 13221098 13244537 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 977982665 Kevin White, UChicago 0c17fdfa393945053ce1cec1b80910f2 https://www.encodeproject.org/files/ENCFF281XYL/@@download/ENCFF281XYL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/6597ec80-1678-4dfe-aae7-2894307c026f/ENCFF281XYL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF768ZUH bam bam alignments dm6 ENCSR840VLX Control ChIP-seq /fly-donors/ENCDO152XKX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34727/'], '@type': ['Target', 'Item'], 'name': 'CG15479-dmelanogaster', 'label': 'CG15479', '@id': '/targets/CG15479-dmelanogaster/', 'title': 'CG15479 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bb035d68-b6bb-4f60-a99c-f725a8671e30', 'status': 'released'} dm3 2L 13221098 13244537 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF281XYL/, /files/ENCFF479RCH/ 1299809593 Kevin White, UChicago 6295501dc21c996170d302cddc6ceaa2 https://www.encodeproject.org/files/ENCFF768ZUH/@@download/ENCFF768ZUH.bam released s3://encode-public/2019/04/13/fb2040d3-f2aa-4ff2-ba1a-665d607ae445/ENCFF768ZUH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF145UMO bigWig bigWig read-depth normalized signal dm6 ENCSR840VLX Control ChIP-seq /fly-donors/ENCDO152XKX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34727/'], '@type': ['Target', 'Item'], 'name': 'CG15479-dmelanogaster', 'label': 'CG15479', '@id': '/targets/CG15479-dmelanogaster/', 'title': 'CG15479 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bb035d68-b6bb-4f60-a99c-f725a8671e30', 'status': 'released'} dm3 2L 13221098 13244537 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF768ZUH/ 17802798 Kevin White, UChicago a0df2332d5fc2afc87eb3bb471c2eaf1 https://www.encodeproject.org/files/ENCFF145UMO/@@download/ENCFF145UMO.bigWig released s3://encode-public/2019/04/16/07afad46-532a-4223-b4c3-709a7b561302/ENCFF145UMO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF639LOK bigWig bigWig signal of unique reads dm6 ENCSR840VLX Control ChIP-seq /fly-donors/ENCDO152XKX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34727/'], '@type': ['Target', 'Item'], 'name': 'CG15479-dmelanogaster', 'label': 'CG15479', '@id': '/targets/CG15479-dmelanogaster/', 'title': 'CG15479 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bb035d68-b6bb-4f60-a99c-f725a8671e30', 'status': 'released'} dm3 2L 13221098 13244537 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF768ZUH/ 17725473 Kevin White, UChicago 94930db07063dfe8dab03ea194908ca3 https://www.encodeproject.org/files/ENCFF639LOK/@@download/ENCFF639LOK.bigWig released s3://encode-public/2019/04/16/ef45c71d-efd6-45c9-ad6e-71fadb6f5426/ENCFF639LOK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF129ACU fastq fastq reads ENCSR712UUA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2103/'], '@type': ['Target', 'Item'], 'name': 'ESRRB-human', 'label': 'ESRRB', '@id': '/targets/ESRRB-human/', 'title': 'ESRRB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a4ee9e0c-094e-48fa-adb4-b74655e1e95f', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF204YKL/ 2483747159 Michael Snyder, Stanford 6c6e00d28a387b3c4fcf151950962221 SRA:SRR14103160 https://www.encodeproject.org/files/ENCFF129ACU/@@download/ENCFF129ACU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/b444b77d-bc37-4ed1-aa49-93b46f636dad/ENCFF129ACU.fastq.gz mild to moderate bottlenecking ENCFF204YKL fastq fastq reads ENCSR712UUA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2103/'], '@type': ['Target', 'Item'], 'name': 'ESRRB-human', 'label': 'ESRRB', '@id': '/targets/ESRRB-human/', 'title': 'ESRRB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a4ee9e0c-094e-48fa-adb4-b74655e1e95f', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF129ACU/ 2977135896 Michael Snyder, Stanford db907a26e8274f20e164b5d9523ebbfe SRA:SRR14103160 https://www.encodeproject.org/files/ENCFF204YKL/@@download/ENCFF204YKL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/2963408b-bf1d-4520-a7e7-1b4d7e8a74e9/ENCFF204YKL.fastq.gz mild to moderate bottlenecking ENCFF539NPB bam bam unfiltered alignments GRCh38 ENCSR712UUA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2103/'], '@type': ['Target', 'Item'], 'name': 'ESRRB-human', 'label': 'ESRRB', '@id': '/targets/ESRRB-human/', 'title': 'ESRRB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a4ee9e0c-094e-48fa-adb4-b74655e1e95f', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF129ACU/, /files/ENCFF204YKL/ 5368683175 ENCODE Processing Pipeline 53d51a472b6f5c9b2de799dba3666904 https://www.encodeproject.org/files/ENCFF539NPB/@@download/ENCFF539NPB.bam released s3://encode-public/2020/05/15/e49b4033-1c16-438c-ac99-862a65353ea2/ENCFF539NPB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF859ABO bam bam alignments GRCh38 ENCSR712UUA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2103/'], '@type': ['Target', 'Item'], 'name': 'ESRRB-human', 'label': 'ESRRB', '@id': '/targets/ESRRB-human/', 'title': 'ESRRB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a4ee9e0c-094e-48fa-adb4-b74655e1e95f', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF129ACU/, /files/ENCFF204YKL/ 3867160210 ENCODE Processing Pipeline 44979bb91df457a8a22ab4543cfa9e16 https://www.encodeproject.org/files/ENCFF859ABO/@@download/ENCFF859ABO.bam released s3://encode-public/2020/05/15/97c1e4d9-658d-4f3f-be06-e4c7e1ec539d/ENCFF859ABO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF948PID fastq fastq reads ENCSR402HVI Control ChIP-seq /fly-donors/ENCDO639BZY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36068/'], '@type': ['Target', 'Item'], 'name': 'CG18011-dmelanogaster', 'label': 'CG18011', '@id': '/targets/CG18011-dmelanogaster/', 'title': 'CG18011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2b6381c8-e08c-463e-af2d-a98179eacb99', 'status': 'released'} dm3 2R 6020959 6043020 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3645302844 Kevin White, UChicago 0537d10a77a556acba19ccc59aebdc93 https://www.encodeproject.org/files/ENCFF948PID/@@download/ENCFF948PID.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/c5e36c23-0188-4a20-b51e-6121c80882e5/ENCFF948PID.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF332IKT bam bam alignments dm3 ENCSR402HVI Control ChIP-seq /fly-donors/ENCDO639BZY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36068/'], '@type': ['Target', 'Item'], 'name': 'CG18011-dmelanogaster', 'label': 'CG18011', '@id': '/targets/CG18011-dmelanogaster/', 'title': 'CG18011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2b6381c8-e08c-463e-af2d-a98179eacb99', 'status': 'released'} dm3 2R 6020959 6043020 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF948PID/, /files/ENCFF059UHX/ 5052282152 Kevin White, UChicago 699cfb8c929d3e513af2f7d0017986be https://www.encodeproject.org/files/ENCFF332IKT/@@download/ENCFF332IKT.bam released s3://encode-public/2016/12/21/137b5bcf-e9f7-43e9-81fd-d19e248dcc72/ENCFF332IKT.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF189KDT bam bam alignments dm6 ENCSR402HVI Control ChIP-seq /fly-donors/ENCDO639BZY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36068/'], '@type': ['Target', 'Item'], 'name': 'CG18011-dmelanogaster', 'label': 'CG18011', '@id': '/targets/CG18011-dmelanogaster/', 'title': 'CG18011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2b6381c8-e08c-463e-af2d-a98179eacb99', 'status': 'released'} dm3 2R 6020959 6043020 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF948PID/, /files/ENCFF479RCH/ 5021624806 Kevin White, UChicago 676b64384dd35b79c8711e851deb819b https://www.encodeproject.org/files/ENCFF189KDT/@@download/ENCFF189KDT.bam released s3://encode-public/2016/12/22/ab73a092-bcdd-4030-8eab-aec7df29faac/ENCFF189KDT.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF058HZD bigWig bigWig signal of unique reads dm3 ENCSR402HVI Control ChIP-seq /fly-donors/ENCDO639BZY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36068/'], '@type': ['Target', 'Item'], 'name': 'CG18011-dmelanogaster', 'label': 'CG18011', '@id': '/targets/CG18011-dmelanogaster/', 'title': 'CG18011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2b6381c8-e08c-463e-af2d-a98179eacb99', 'status': 'released'} dm3 2R 6020959 6043020 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF332IKT/ 15949290 Kevin White, UChicago a9169b050399dea88d4d4d3ce6836497 https://www.encodeproject.org/files/ENCFF058HZD/@@download/ENCFF058HZD.bigWig released s3://encode-public/2017/01/03/45fc1309-4a39-4126-8a99-6d07d971dacb/ENCFF058HZD.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF459HWS bigWig bigWig read-depth normalized signal dm3 ENCSR402HVI Control ChIP-seq /fly-donors/ENCDO639BZY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36068/'], '@type': ['Target', 'Item'], 'name': 'CG18011-dmelanogaster', 'label': 'CG18011', '@id': '/targets/CG18011-dmelanogaster/', 'title': 'CG18011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2b6381c8-e08c-463e-af2d-a98179eacb99', 'status': 'released'} dm3 2R 6020959 6043020 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF332IKT/ 16008463 Kevin White, UChicago 0d187a4b8ec9daaa3012f0cfa8bef5f2 https://www.encodeproject.org/files/ENCFF459HWS/@@download/ENCFF459HWS.bigWig released s3://encode-public/2017/01/03/c1605b83-b4d9-43b8-8c9a-0429dcd81726/ENCFF459HWS.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF593KRU bigWig bigWig read-depth normalized signal dm6 ENCSR402HVI Control ChIP-seq /fly-donors/ENCDO639BZY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36068/'], '@type': ['Target', 'Item'], 'name': 'CG18011-dmelanogaster', 'label': 'CG18011', '@id': '/targets/CG18011-dmelanogaster/', 'title': 'CG18011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2b6381c8-e08c-463e-af2d-a98179eacb99', 'status': 'released'} dm3 2R 6020959 6043020 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF189KDT/ 17907787 Kevin White, UChicago d5e458b4c2ee3cb36c92002da9060617 https://www.encodeproject.org/files/ENCFF593KRU/@@download/ENCFF593KRU.bigWig released s3://encode-public/2017/01/03/fb14568c-f959-45b1-986d-7c2a35c9e87a/ENCFF593KRU.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF278VSC bigWig bigWig signal of unique reads dm6 ENCSR402HVI Control ChIP-seq /fly-donors/ENCDO639BZY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36068/'], '@type': ['Target', 'Item'], 'name': 'CG18011-dmelanogaster', 'label': 'CG18011', '@id': '/targets/CG18011-dmelanogaster/', 'title': 'CG18011 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2b6381c8-e08c-463e-af2d-a98179eacb99', 'status': 'released'} dm3 2R 6020959 6043020 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF189KDT/ 17825427 Kevin White, UChicago 447d63f81b24aad8fbf5b74261aabe05 https://www.encodeproject.org/files/ENCFF278VSC/@@download/ENCFF278VSC.bigWig released s3://encode-public/2017/01/03/2556f853-f7d3-4c4d-ae12-852630f957a6/ENCFF278VSC.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF570CXG fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 505710432 Bradley Bernstein, Broad cb6dec7d144f55df6d5d0e933579194c SRA:SRR14103982 https://www.encodeproject.org/files/ENCFF570CXG/@@download/ENCFF570CXG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/d36dfda7-bd56-4eb0-9716-9dfa866533c3/ENCFF570CXG.fastq.gz ENCFF626PTS fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 510221636 Bradley Bernstein, Broad 2d07966c7dec355c640eca19a0289204 SRA:SRR14103983 https://www.encodeproject.org/files/ENCFF626PTS/@@download/ENCFF626PTS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/450f9285-6159-4ebc-89c3-993c0bc99318/ENCFF626PTS.fastq.gz ENCFF283WFL fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 515822105 Bradley Bernstein, Broad fd71ea38fe6d10b27a391fd11a0620b3 SRA:SRR14103984 https://www.encodeproject.org/files/ENCFF283WFL/@@download/ENCFF283WFL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/730d5f20-5e6c-4328-b3e9-d9bbf555599f/ENCFF283WFL.fastq.gz ENCFF217MFG fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 461189272 Bradley Bernstein, Broad 35cca8b68e4aee17ededd790d011d4eb SRA:SRR14103978 https://www.encodeproject.org/files/ENCFF217MFG/@@download/ENCFF217MFG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9233a5ef-daae-49eb-8396-67707f386763/ENCFF217MFG.fastq.gz ENCFF985OWA fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 514707744 Bradley Bernstein, Broad 64c42e1829a5b57db8c13bb514417772 SRA:SRR14103985 https://www.encodeproject.org/files/ENCFF985OWA/@@download/ENCFF985OWA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/198edba6-ab77-4e44-9aa9-2ec21785b232/ENCFF985OWA.fastq.gz ENCFF408XQT fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 467495823 Bradley Bernstein, Broad 80ed3d6eaec1c37c065c2e14376bad13 SRA:SRR14103979 https://www.encodeproject.org/files/ENCFF408XQT/@@download/ENCFF408XQT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/0e488240-b67a-4d67-949b-56bb6dd94929/ENCFF408XQT.fastq.gz ENCFF611YFV fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 440135087 Bradley Bernstein, Broad dd40bf7d19644148b736ad8ee3a201c3 SRA:SRR14103980 https://www.encodeproject.org/files/ENCFF611YFV/@@download/ENCFF611YFV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/42325a1a-f258-4dd7-a86e-8e5ae943ec03/ENCFF611YFV.fastq.gz ENCFF724XXG fastq fastq reads ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 464442436 Bradley Bernstein, Broad 9068fdc5b7446c2386c33e495a7be161 SRA:SRR14103981 https://www.encodeproject.org/files/ENCFF724XXG/@@download/ENCFF724XXG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6a6991fc-52d9-4235-b50b-51ff141af918/ENCFF724XXG.fastq.gz ENCFF518CWM bam bam unfiltered alignments GRCh38 ENCSR076IYM Control ChIP-seq /human-donors/ENCDO336AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF985OWA/, /files/ENCFF217MFG/, /files/ENCFF626PTS/, /files/ENCFF283WFL/, /files/ENCFF724XXG/, /files/ENCFF611YFV/, /files/ENCFF408XQT/, 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ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF291KWD/ 6225258731 Richard Myers, HAIB 43b439492c91572c9fb922b0c5a09746 SRA:SRR8660292 https://www.encodeproject.org/files/ENCFF323QXB/@@download/ENCFF323QXB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/0c2bc3d9-17f0-401c-8279-815986a4186d/ENCFF323QXB.fastq.gz ENCFF291KWD fastq fastq reads ENCSR883DDV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF323QXB/ 6458841769 Richard Myers, HAIB 4ad086caa631a90d1c2ac646b490ff87 SRA:SRR8660292 https://www.encodeproject.org/files/ENCFF291KWD/@@download/ENCFF291KWD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/8dcfb423-2b55-4dad-aeb2-ea87cb8ce074/ENCFF291KWD.fastq.gz ENCFF535HQU bam bam unfiltered alignments hg19 ENCSR883DDV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF323QXB/, /files/ENCFF807MUK/, /files/ENCFF291KWD/ 14614278411 ENCODE Processing Pipeline 10e6a3b62fc11bd26f7504ef3b8b025e https://www.encodeproject.org/files/ENCFF535HQU/@@download/ENCFF535HQU.bam released s3://encode-public/2017/02/02/4c718b30-c82d-4c1a-ab27-1296b2dcd963/ENCFF535HQU.bam ENCODE3 hg19 archived ENCFF559IFX bam bam alignments hg19 ENCSR883DDV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF323QXB/, /files/ENCFF807MUK/, /files/ENCFF291KWD/ 8116971581 ENCODE Processing Pipeline 35a5e7a948dded90c96b29a959d99eb4 https://www.encodeproject.org/files/ENCFF559IFX/@@download/ENCFF559IFX.bam released s3://encode-public/2017/02/02/71c6283a-464a-42ff-85c1-0f3e7fa5143f/ENCFF559IFX.bam ENCODE3 hg19 archived ENCFF542OIG bam bam unfiltered alignments GRCh38 ENCSR883DDV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF323QXB/, /files/ENCFF291KWD/, /files/ENCFF643CGH/ 14693051251 ENCODE Processing Pipeline 903f266352028b1bd3ca89a4e185d307 https://www.encodeproject.org/files/ENCFF542OIG/@@download/ENCFF542OIG.bam released s3://encode-public/2017/02/02/e0e446b4-502c-49ac-89a3-d165b8db227b/ENCFF542OIG.bam ENCODE3 GRCh38 archived ENCFF207QPG bam bam alignments GRCh38 ENCSR883DDV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF323QXB/, /files/ENCFF291KWD/, /files/ENCFF643CGH/ 8135118021 ENCODE Processing Pipeline 9c7e2ee5fa9a14b8eaffb8dc23a9921f https://www.encodeproject.org/files/ENCFF207QPG/@@download/ENCFF207QPG.bam released s3://encode-public/2017/02/02/6173a6a0-61d8-4b3b-9f04-aee85c3c4639/ENCFF207QPG.bam ENCODE3 GRCh38 archived ENCFF440YIR bam bam alignments GRCh38 ENCSR883DDV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF323QXB/, /files/ENCFF291KWD/ 7796795513 ENCODE Processing Pipeline c147588172cc63fa1dcdaa4df0ed92fa https://www.encodeproject.org/files/ENCFF440YIR/@@download/ENCFF440YIR.bam released s3://encode-public/2020/06/06/70300998-fe5f-466a-af09-de3b9ab31c59/ENCFF440YIR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF719FHG bam bam unfiltered alignments GRCh38 ENCSR883DDV Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF323QXB/, 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moderate bottlenecking ENCFF184TJX fastq fastq reads ENCSR185GDB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF035HZW/ 1848214798 Richard Myers, HAIB f3bb2dc12ee34a8dee640bad860f2b94 SRA:SRR6212929 https://www.encodeproject.org/files/ENCFF184TJX/@@download/ENCFF184TJX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/a261de97-7a82-4207-8285-933ce59537ba/ENCFF184TJX.fastq.gz ENCFF035HZW fastq fastq reads ENCSR185GDB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF184TJX/ 1883373984 Richard Myers, HAIB 1504304af6b17ce2f37c18aa8862265c SRA:SRR6212929 https://www.encodeproject.org/files/ENCFF035HZW/@@download/ENCFF035HZW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/f88419ef-22cd-413e-b561-1824bcbd0af5/ENCFF035HZW.fastq.gz ENCFF734JWM bam bam unfiltered alignments hg19 ENCSR185GDB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF035HZW/, /files/ENCFF807MUK/, /files/ENCFF184TJX/ 4476882977 ENCODE Processing Pipeline 9cac9f28a4cbeb78553648c5fcc1ea5a https://www.encodeproject.org/files/ENCFF734JWM/@@download/ENCFF734JWM.bam released s3://encode-public/2017/02/02/769657df-1ef5-4f26-b573-57fd726e6c2b/ENCFF734JWM.bam ENCODE3 hg19 archived ENCFF554IQS bam bam alignments hg19 ENCSR185GDB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF035HZW/, /files/ENCFF807MUK/, /files/ENCFF184TJX/ 2950763054 ENCODE Processing Pipeline de66e6328b9be41a6e066f09632ca2c9 https://www.encodeproject.org/files/ENCFF554IQS/@@download/ENCFF554IQS.bam released s3://encode-public/2017/02/02/8601b2da-46d6-4fcd-97e6-73d649b930f4/ENCFF554IQS.bam ENCODE3 hg19 archived ENCFF048BXG bam bam unfiltered alignments GRCh38 ENCSR185GDB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF035HZW/, /files/ENCFF643CGH/, /files/ENCFF184TJX/ 4495706839 ENCODE Processing Pipeline 2627452e24546ca72561a5a1fc14ea3c https://www.encodeproject.org/files/ENCFF048BXG/@@download/ENCFF048BXG.bam released s3://encode-public/2017/02/02/f9a1f868-29dd-4b53-bfa8-291f742c3571/ENCFF048BXG.bam ENCODE3 GRCh38 archived ENCFF741GUI bam bam alignments GRCh38 ENCSR185GDB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF035HZW/, /files/ENCFF643CGH/, 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2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF184TJX/, /files/ENCFF035HZW/ 2772189211 ENCODE Processing Pipeline fa21f144b2098b4855a659a41dba803b https://www.encodeproject.org/files/ENCFF787KFS/@@download/ENCFF787KFS.bam released s3://encode-public/2020/06/06/068f24ce-a058-4be9-a35d-d101871aa27a/ENCFF787KFS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF610WEU fastq fastq reads ENCSR255HLM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF950EXK/ 2935773341 Richard Myers, HAIB 73972836c473c7d51a53c5eacb073970 SRA:SRR6212979 https://www.encodeproject.org/files/ENCFF610WEU/@@download/ENCFF610WEU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/0a25311c-d9ed-4841-83b8-3fe39b588b49/ENCFF610WEU.fastq.gz ENCFF950EXK fastq fastq reads ENCSR255HLM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo 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/human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF610WEU/, /files/ENCFF807MUK/, /files/ENCFF950EXK/ 5043264530 ENCODE Processing Pipeline 1031828c741267e8d2fd2c21e0f7b0a1 https://www.encodeproject.org/files/ENCFF757ZTK/@@download/ENCFF757ZTK.bam released s3://encode-public/2017/02/02/2b33daa7-fdcc-4857-83d6-cdb4fb525f67/ENCFF757ZTK.bam ENCODE3 hg19 archived ENCFF295VUB bam bam unfiltered alignments GRCh38 ENCSR255HLM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF610WEU/, /files/ENCFF643CGH/, /files/ENCFF950EXK/ 7157340705 ENCODE Processing Pipeline 7096fcf18ffcc16ed0701ccc6dd68899 https://www.encodeproject.org/files/ENCFF295VUB/@@download/ENCFF295VUB.bam released s3://encode-public/2017/02/02/c13275cc-e892-40d1-8b34-5a15881b62cd/ENCFF295VUB.bam ENCODE3 GRCh38 archived ENCFF271JKY bam bam alignments GRCh38 ENCSR255HLM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF610WEU/, /files/ENCFF643CGH/, /files/ENCFF950EXK/ 5049895257 ENCODE Processing Pipeline 90b64af0135e0bce649d6531c1e9b41a https://www.encodeproject.org/files/ENCFF271JKY/@@download/ENCFF271JKY.bam released s3://encode-public/2017/02/02/3558f283-03f5-4dbe-9328-3eca427b84de/ENCFF271JKY.bam ENCODE3 GRCh38 archived ENCFF660FTU bam bam unfiltered alignments GRCh38 ENCSR255HLM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF610WEU/, /files/ENCFF950EXK/ 7194142453 ENCODE Processing Pipeline a1210200909ef9c2d3405d56ecd4ccac https://www.encodeproject.org/files/ENCFF660FTU/@@download/ENCFF660FTU.bam released s3://encode-public/2020/06/06/0e53a953-6027-454b-a464-36ab19b39d31/ENCFF660FTU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF006FFG bam bam alignments GRCh38 ENCSR255HLM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000992 ovary tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF610WEU/, /files/ENCFF950EXK/ 4792230997 ENCODE Processing Pipeline 4d6a3aaccb9a9359772224e69b2cfe1a https://www.encodeproject.org/files/ENCFF006FFG/@@download/ENCFF006FFG.bam released s3://encode-public/2020/06/06/6f649c3b-78f0-44ad-9694-80a252e8e2bb/ENCFF006FFG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF380CDL bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF642ZJC/, /files/ENCFF474ZPM/ 2689049009 ENCODE Processing Pipeline f6cd2725e45dbd6cc161ed091b82d24a https://www.encodeproject.org/files/ENCFF380CDL/@@download/ENCFF380CDL.bam released s3://encode-public/2020/09/16/83a74468-69d5-4dc1-a88f-1a8cbbb66da7/ENCFF380CDL.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF539MTH bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 36 /files/ENCFF574VLI/, /files/ENCFF110MCL/, /files/ENCFF463RRE/ 1341499653 ENCODE Processing Pipeline cf0a1ce7925e4e553fbe393932185977 https://www.encodeproject.org/files/ENCFF539MTH/@@download/ENCFF539MTH.bam released s3://encode-public/2020/09/16/e6b9a193-bd7f-4b12-b133-f8d7a6e06eb2/ENCFF539MTH.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF310DJE bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 /files/ENCFF608CWZ/, /files/ENCFF110MCL/, /files/ENCFF369RYY/, /files/ENCFF881CNC/, /files/ENCFF356QYZ/, /files/ENCFF854ELY/, /files/ENCFF653JWL/ 2934961475 ENCODE Processing Pipeline e045363064b6cff7b8ca62eadccf5ad8 https://www.encodeproject.org/files/ENCFF310DJE/@@download/ENCFF310DJE.bam released s3://encode-public/2020/09/16/beb1fedb-7145-4c9f-88e0-714db3f62f64/ENCFF310DJE.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF263RTA bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 36 /files/ENCFF574VLI/, /files/ENCFF110MCL/, /files/ENCFF463RRE/ 1695621729 ENCODE Processing Pipeline 37911f68ab146df48781fe4377921892 https://www.encodeproject.org/files/ENCFF263RTA/@@download/ENCFF263RTA.bam released s3://encode-public/2020/09/16/c41d5c36-72a5-4c84-9e3c-8b1adeeeae90/ENCFF263RTA.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF463RRE fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 76 single-ended 1416562594 Bradley Bernstein, Broad 3341be2238202bc34c25c056a1cc1823 SRA:SRR5331185 https://www.encodeproject.org/files/ENCFF463RRE/@@download/ENCFF463RRE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/abe1a58a-935d-4643-9952-a86ba79d6787/ENCFF463RRE.fastq.gz low read length, mixed read lengths ENCFF574VLI fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 76 single-ended 1425742067 Bradley Bernstein, Broad d1ee2fc2bcb4db956b6d9dca9b48be64 SRA:SRR5331186 https://www.encodeproject.org/files/ENCFF574VLI/@@download/ENCFF574VLI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/7eb3182e-1c73-4c02-8af2-5c899f7c3159/ENCFF574VLI.fastq.gz low read length, mixed read lengths ENCFF162ADN fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1 76 single-ended 983914289 Bradley Bernstein, Broad 55d41585faf7c7ba270bcf6b6366259a SRA:SRR5331187 https://www.encodeproject.org/files/ENCFF162ADN/@@download/ENCFF162ADN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/0b6c3027-e47b-4991-abee-6fe8bc077eab/ENCFF162ADN.fastq.gz low read length, mixed read lengths ENCFF066LYG fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1 76 single-ended 963141029 Bradley Bernstein, Broad 9dc1e3d6dda2208e14d2a6da3e56ab64 SRA:SRR5331188 https://www.encodeproject.org/files/ENCFF066LYG/@@download/ENCFF066LYG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/121d2c37-a3f7-4834-9b5d-e68683fca15b/ENCFF066LYG.fastq.gz low read length, mixed read lengths ENCFF642ZJC fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_2 76 single-ended 1153676016 Bradley Bernstein, Broad 0593f73ce37ec428b755bead208921af SRA:SRR5331195 https://www.encodeproject.org/files/ENCFF642ZJC/@@download/ENCFF642ZJC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/8aeb4b0d-757c-4fa4-9509-fe7e2b76ce42/ENCFF642ZJC.fastq.gz low read length, mixed read lengths ENCFF474ZPM fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_2 76 single-ended 1149180469 Bradley Bernstein, Broad 23c056e121f1828722809972bbfabd05 SRA:SRR5331196 https://www.encodeproject.org/files/ENCFF474ZPM/@@download/ENCFF474ZPM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/d0896eac-6735-4bab-9f8f-f495cdf33316/ENCFF474ZPM.fastq.gz low read length, mixed read lengths ENCFF854ELY fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 single-ended 699456240 Bradley Bernstein, Broad 304093500236ddfb30390f9b2df207aa SRA:SRR5331189 https://www.encodeproject.org/files/ENCFF854ELY/@@download/ENCFF854ELY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/afe36ae0-81c9-4312-9c25-6927460670fe/ENCFF854ELY.fastq.gz low read length, mixed read lengths ENCFF356QYZ fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 single-ended 694820485 Bradley Bernstein, Broad 3026f3fd6a76d0cbd3283332571d8efe SRA:SRR5331190 https://www.encodeproject.org/files/ENCFF356QYZ/@@download/ENCFF356QYZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/c819156d-862b-40e5-aa70-6a4d5ced1a09/ENCFF356QYZ.fastq.gz low read length, mixed read lengths ENCFF608CWZ fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 single-ended 222050278 Bradley Bernstein, Broad 6a790ed3d53ddc526797082c7685548d SRA:SRR5331191 https://www.encodeproject.org/files/ENCFF608CWZ/@@download/ENCFF608CWZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/576fb764-414f-4c60-9137-76f2e63e37a2/ENCFF608CWZ.fastq.gz low read length, mixed read lengths ENCFF881CNC fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 single-ended 200914427 Bradley Bernstein, Broad 4b37adc67962c033edc59cb80c2a6a71 SRA:SRR5331192 https://www.encodeproject.org/files/ENCFF881CNC/@@download/ENCFF881CNC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/16b923d8-b241-4ac0-9179-beba665d5eb8/ENCFF881CNC.fastq.gz low read length, mixed read lengths ENCFF369RYY fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 single-ended 229108071 Bradley Bernstein, Broad 0d339a6ed61ed28bfb34232be9f030bc SRA:SRR5331193 https://www.encodeproject.org/files/ENCFF369RYY/@@download/ENCFF369RYY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/9ad76066-e8ad-4890-88ad-07498364379d/ENCFF369RYY.fastq.gz low read length, mixed read lengths ENCFF653JWL fastq fastq reads ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 single-ended 274553711 Bradley Bernstein, Broad fc46c0125efcf48598c9f2eaa3774f7b SRA:SRR5331194 https://www.encodeproject.org/files/ENCFF653JWL/@@download/ENCFF653JWL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/24/51396a7c-2388-4198-a1f3-0a8f79249895/ENCFF653JWL.fastq.gz low read length, mixed read lengths ENCFF255TUT bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 36 /files/ENCFF574VLI/, /files/ENCFF643CGH/, /files/ENCFF463RRE/ 1229253845 ENCODE Processing Pipeline d629b246aec6e589e031b008157510d2 https://www.encodeproject.org/files/ENCFF255TUT/@@download/ENCFF255TUT.bam released s3://encode-public/2017/02/03/a955f743-07d0-400a-af99-f1a204bc06e2/ENCFF255TUT.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF274GMA bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 36 /files/ENCFF574VLI/, /files/ENCFF643CGH/, /files/ENCFF463RRE/ 1734897811 ENCODE Processing Pipeline 726d84d13531248a7efe819a0b0614ee https://www.encodeproject.org/files/ENCFF274GMA/@@download/ENCFF274GMA.bam released s3://encode-public/2017/02/03/cf388917-883a-4559-a51b-9782ab4b56a4/ENCFF274GMA.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF122NRW bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF881CNC/, /files/ENCFF653JWL/, /files/ENCFF356QYZ/, /files/ENCFF854ELY/ 3027927534 ENCODE Processing Pipeline 5560215cb7e403de240a7250074fbbe4 https://www.encodeproject.org/files/ENCFF122NRW/@@download/ENCFF122NRW.bam released s3://encode-public/2017/02/03/c172f1e7-c6ca-4dcb-8d7d-bfc9149c6f9c/ENCFF122NRW.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF645CCA bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF881CNC/, /files/ENCFF653JWL/, /files/ENCFF356QYZ/, /files/ENCFF854ELY/ 1991892924 ENCODE Processing Pipeline b2741939d28b1756668fa77bd29ed52f https://www.encodeproject.org/files/ENCFF645CCA/@@download/ENCFF645CCA.bam released s3://encode-public/2017/02/03/01375da7-c553-45b6-abca-5b0453e4bd17/ENCFF645CCA.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF719TUA bam bam unfiltered alignments hg19 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 36 /files/ENCFF574VLI/, /files/ENCFF807MUK/, /files/ENCFF463RRE/ 1724722864 ENCODE Processing Pipeline 190697368378bd5ebb87a900bcdcd728 https://www.encodeproject.org/files/ENCFF719TUA/@@download/ENCFF719TUA.bam released s3://encode-public/2017/02/04/f18b8a59-fa5c-4aa9-9081-6cc7e1b33981/ENCFF719TUA.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF303SPG bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF642ZJC/, /files/ENCFF643CGH/, /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/ 2760904192 ENCODE Processing Pipeline d2f73da2822961d017cfabd5ae502205 https://www.encodeproject.org/files/ENCFF303SPG/@@download/ENCFF303SPG.bam released s3://encode-public/2017/02/04/1ae385ab-f14e-4b0b-b806-393722b7756f/ENCFF303SPG.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF149EKR bam bam alignments hg19 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 36 /files/ENCFF574VLI/, /files/ENCFF807MUK/, /files/ENCFF463RRE/ 1229665283 ENCODE Processing Pipeline 34b176cb93d040013ba3799c2adee10e https://www.encodeproject.org/files/ENCFF149EKR/@@download/ENCFF149EKR.bam released s3://encode-public/2017/02/04/fc766936-9d9c-43e1-b178-3ada5e133d47/ENCFF149EKR.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF943MYJ bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF642ZJC/, /files/ENCFF643CGH/, /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/ 1967549514 ENCODE Processing Pipeline f285254dffa3c5302484da9b16c05d23 https://www.encodeproject.org/files/ENCFF943MYJ/@@download/ENCFF943MYJ.bam released s3://encode-public/2017/02/04/3b8a5aba-5392-4aee-bd00-d15c90c5cebe/ENCFF943MYJ.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF265ZJL bam bam unfiltered alignments hg19 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF807MUK/, /files/ENCFF881CNC/, /files/ENCFF653JWL/, /files/ENCFF356QYZ/, /files/ENCFF854ELY/ 3006753378 ENCODE Processing Pipeline fdb8fd3b5db478379805fa7ea1c1429a https://www.encodeproject.org/files/ENCFF265ZJL/@@download/ENCFF265ZJL.bam released s3://encode-public/2017/02/04/f20abe15-edf7-4f18-96ee-57fecd4e6d93/ENCFF265ZJL.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF705NOL bam bam alignments hg19 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF807MUK/, /files/ENCFF881CNC/, /files/ENCFF653JWL/, /files/ENCFF356QYZ/, /files/ENCFF854ELY/ 1991901430 ENCODE Processing Pipeline 75e3b5de6fb9932bc65ff007e5d40d65 https://www.encodeproject.org/files/ENCFF705NOL/@@download/ENCFF705NOL.bam released s3://encode-public/2017/02/04/5931621f-a0ee-450c-b82d-4a23cc380ca9/ENCFF705NOL.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF569GTH bam bam unfiltered alignments hg19 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF642ZJC/, /files/ENCFF807MUK/, /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/ 2737643933 ENCODE Processing Pipeline d095539b681a8b5cc354a779d450fc3c https://www.encodeproject.org/files/ENCFF569GTH/@@download/ENCFF569GTH.bam released s3://encode-public/2017/02/04/77072e5c-6439-4679-b5df-9ccaabbbca06/ENCFF569GTH.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF165PBN bam bam alignments hg19 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF642ZJC/, /files/ENCFF807MUK/, /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/ 1967989586 ENCODE Processing Pipeline 7e19ffb7420514eb95d38266e7ec6575 https://www.encodeproject.org/files/ENCFF165PBN/@@download/ENCFF165PBN.bam released s3://encode-public/2017/02/04/74c57ac5-0d2d-4300-bfb8-d39bc07bd535/ENCFF165PBN.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF856IEI bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 36 /files/ENCFF608CWZ/, /files/ENCFF110MCL/, /files/ENCFF369RYY/, /files/ENCFF881CNC/, /files/ENCFF356QYZ/, /files/ENCFF854ELY/, /files/ENCFF653JWL/ 2155470734 ENCODE Processing Pipeline 019686a0461c6828208f4a28ca346a7b https://www.encodeproject.org/files/ENCFF856IEI/@@download/ENCFF856IEI.bam released s3://encode-public/2020/09/16/5126e30f-2db1-4f39-88e9-9aab1c35cbec/ENCFF856IEI.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF245IFK bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF642ZJC/, /files/ENCFF474ZPM/ 2158617576 ENCODE Processing Pipeline d573cccb3436603d6a198710898a34f3 https://www.encodeproject.org/files/ENCFF245IFK/@@download/ENCFF245IFK.bam released s3://encode-public/2020/09/16/4be9485f-84aa-46cd-abcf-c80fba9b6c20/ENCFF245IFK.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF100YPY bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 30 /files/ENCFF356QYZ/, /files/ENCFF110MCL/, /files/ENCFF881CNC/, /files/ENCFF608CWZ/, /files/ENCFF854ELY/, /files/ENCFF369RYY/, /files/ENCFF653JWL/ 1881554089 ENCODE Processing Pipeline 4355b33c9282ee99b584101d7c49a36c https://www.encodeproject.org/files/ENCFF100YPY/@@download/ENCFF100YPY.bam released s3://encode-public/2021/02/04/38b214bb-3ff8-47ba-bc9d-e544a4233108/ENCFF100YPY.bam ENCODE4 v1.6.1 GRCh38 released low read length, mixed read lengths ENCFF112CYV bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 2 2_1 30 /files/ENCFF356QYZ/, /files/ENCFF110MCL/, /files/ENCFF881CNC/, /files/ENCFF608CWZ/, /files/ENCFF854ELY/, /files/ENCFF369RYY/, /files/ENCFF653JWL/ 2624493393 ENCODE Processing Pipeline 3cbe505166242382e40f7d2030020e0d https://www.encodeproject.org/files/ENCFF112CYV/@@download/ENCFF112CYV.bam released s3://encode-public/2021/02/04/0ccd3754-d1d4-472d-bd1b-47fe9d7442ad/ENCFF112CYV.bam ENCODE4 v1.6.1 GRCh38 released low read length, mixed read lengths ENCFF525DRE bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 30 /files/ENCFF110MCL/, /files/ENCFF463RRE/, /files/ENCFF574VLI/ 1526357578 ENCODE Processing Pipeline 61b1ccbf3e390f01a90cd1fc0bd3c4f9 https://www.encodeproject.org/files/ENCFF525DRE/@@download/ENCFF525DRE.bam released s3://encode-public/2021/02/04/bca94150-7236-4239-8455-79a1cda7c786/ENCFF525DRE.bam ENCODE4 v1.6.1 GRCh38 released low read length, mixed read lengths ENCFF085CKF bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 30 /files/ENCFF474ZPM/, /files/ENCFF162ADN/, /files/ENCFF110MCL/, /files/ENCFF066LYG/, /files/ENCFF642ZJC/ 1891883881 ENCODE Processing Pipeline fdd1eecf0b8c5649f3860cf7b01d6415 https://www.encodeproject.org/files/ENCFF085CKF/@@download/ENCFF085CKF.bam released s3://encode-public/2021/02/04/daaa9862-4ab5-4d48-a311-a4cd839b16d1/ENCFF085CKF.bam ENCODE4 v1.6.1 GRCh38 released low read length, mixed read lengths ENCFF908MSZ bam bam alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 3 3_1 30 /files/ENCFF110MCL/, /files/ENCFF463RRE/, /files/ENCFF574VLI/ 1158862796 ENCODE Processing Pipeline 7c7df68b05529d5711f8ed00b9eeb2e4 https://www.encodeproject.org/files/ENCFF908MSZ/@@download/ENCFF908MSZ.bam released s3://encode-public/2021/02/04/5debc6ca-362d-490a-b67f-1d465842180a/ENCFF908MSZ.bam ENCODE4 v1.6.1 GRCh38 released low read length, mixed read lengths ENCFF494FIT bam bam unfiltered alignments GRCh38 ENCSR055XHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2017-02-06 ENCODE 200-600 1 1_1, 1_2 30 /files/ENCFF474ZPM/, /files/ENCFF162ADN/, /files/ENCFF110MCL/, /files/ENCFF066LYG/, /files/ENCFF642ZJC/ 2474676063 ENCODE Processing Pipeline 718497cc7e0091515d34bee4cbf2ec9d https://www.encodeproject.org/files/ENCFF494FIT/@@download/ENCFF494FIT.bam released s3://encode-public/2021/02/04/fb319168-2fe5-4c6d-b19a-7058f40507c6/ENCFF494FIT.bam ENCODE4 v1.6.1 GRCh38 released low read length, mixed read lengths ENCFF086MUV fastq fastq reads ENCSR150QOJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF817XOQ/ 2627406969 Michael Snyder, Stanford 630326df2cc7f7fb5ab127c3ad41d717 SRA:SRR14637055 https://www.encodeproject.org/files/ENCFF086MUV/@@download/ENCFF086MUV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7661c3b7-da18-4cbe-b4d0-cfe90e073e4e/ENCFF086MUV.fastq.gz ENCFF817XOQ fastq fastq reads ENCSR150QOJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF086MUV/ 2824674166 Michael Snyder, Stanford 037377727276f4b054e18e82c94d4275 SRA:SRR14637055 https://www.encodeproject.org/files/ENCFF817XOQ/@@download/ENCFF817XOQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/33076ba3-2676-4a8d-879e-d287acea6890/ENCFF817XOQ.fastq.gz ENCFF595DQN bam bam alignments GRCh38 ENCSR150QOJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF086MUV/, /files/ENCFF817XOQ/ 4455174476 ENCODE Processing Pipeline dcb8c7141b62471a17fad20fa7cfcab3 https://www.encodeproject.org/files/ENCFF595DQN/@@download/ENCFF595DQN.bam released s3://encode-public/2020/04/21/3c66b2d0-3ebe-4c7d-a857-290ff7a6b0e7/ENCFF595DQN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF648ANS bam bam unfiltered alignments GRCh38 ENCSR150QOJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF086MUV/, /files/ENCFF817XOQ/ 5330019241 ENCODE Processing Pipeline 79125a9274f24e81dbd59878230ccc07 https://www.encodeproject.org/files/ENCFF648ANS/@@download/ENCFF648ANS.bam released s3://encode-public/2020/04/21/504ffe4e-a78a-407b-b55f-1a8656a4cb6c/ENCFF648ANS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF211PEV fastq fastq reads ENCSR275WKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF698YLK/ 2436561953 Michael Snyder, Stanford ca001d31580a3add76ab14dac2dea08f SRA:SRR14104000 https://www.encodeproject.org/files/ENCFF211PEV/@@download/ENCFF211PEV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/24/c498d8f1-9da9-4a9a-8856-d76febfbac61/ENCFF211PEV.fastq.gz ENCFF698YLK fastq fastq reads ENCSR275WKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF211PEV/ 2063056456 Michael Snyder, Stanford 5f400023abe4c60a4ce8152183cb8050 SRA:SRR14104000 https://www.encodeproject.org/files/ENCFF698YLK/@@download/ENCFF698YLK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/24/7fb476e4-3697-43f3-8284-fd593dbe76a8/ENCFF698YLK.fastq.gz ENCFF342IRD bam bam unfiltered alignments GRCh38 ENCSR275WKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF698YLK/, /files/ENCFF211PEV/ 4668771767 ENCODE Processing Pipeline 769f41055b9a5758c3cebb54fd169f47 https://www.encodeproject.org/files/ENCFF342IRD/@@download/ENCFF342IRD.bam released s3://encode-public/2020/05/11/e1e89eb0-5044-4bcf-b5ad-0bb7d280d5a2/ENCFF342IRD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF492KJP bam bam alignments GRCh38 ENCSR275WKO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF698YLK/, /files/ENCFF211PEV/ 3502407056 ENCODE Processing Pipeline 580b8cc9f0c92f14aa4e1e97c5ececfb https://www.encodeproject.org/files/ENCFF492KJP/@@download/ENCFF492KJP.bam released s3://encode-public/2020/05/11/d2ad6546-32ce-447e-8199-2fa1668b587a/ENCFF492KJP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF534UQT fastq fastq reads ENCSR734XLI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF002QAJ/ 2801515825 Michael Snyder, Stanford 744a8d0231c43716f8b8689b6cb8ef77 SRA:SRR14103336 https://www.encodeproject.org/files/ENCFF534UQT/@@download/ENCFF534UQT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/cd87834c-dadb-4249-8308-8090d8b01503/ENCFF534UQT.fastq.gz ENCFF002QAJ fastq fastq reads ENCSR734XLI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF534UQT/ 3253729749 Michael Snyder, Stanford 6d81deed0a1e69e590c227d6a11c9ee4 SRA:SRR14103336 https://www.encodeproject.org/files/ENCFF002QAJ/@@download/ENCFF002QAJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/2dfc770d-4fdc-4e8f-a263-70795115ea8c/ENCFF002QAJ.fastq.gz ENCFF676OIV bam bam alignments GRCh38 ENCSR734XLI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF534UQT/, /files/ENCFF002QAJ/ 4737817303 ENCODE Processing Pipeline 00fa32b16d23dbc47230033b6d8ea41f https://www.encodeproject.org/files/ENCFF676OIV/@@download/ENCFF676OIV.bam released s3://encode-public/2020/04/20/bc01f268-cfef-46a7-bc94-4310ea4077d0/ENCFF676OIV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF336OQK bam bam unfiltered alignments GRCh38 ENCSR734XLI Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF534UQT/, /files/ENCFF002QAJ/ 5822166048 ENCODE Processing Pipeline 726f4b0c824852c1ec4dc036a73fec77 https://www.encodeproject.org/files/ENCFF336OQK/@@download/ENCFF336OQK.bam released s3://encode-public/2020/04/20/2e0b9de7-ff1d-4119-a24c-c7eed693a956/ENCFF336OQK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF351ZPR fastq fastq reads ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 160707632 Michael Snyder, Stanford 93de274c00ee619c0b861dae7cb7ee67 https://www.encodeproject.org/files/ENCFF351ZPR/@@download/ENCFF351ZPR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/276d1d0b-e7ff-42df-8bab-5bb4dcc51c7e/ENCFF351ZPR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF447YCW fastq fastq reads ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 78341959 Michael Snyder, Stanford 053f56716eb01f2e0329a63b175c04a3 https://www.encodeproject.org/files/ENCFF447YCW/@@download/ENCFF447YCW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e280a883-5299-4519-a930-f8d10c454b8f/ENCFF447YCW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF129FVM bam bam alignments ce10 ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF351ZPR/, /files/ENCFF447YCW/, /files/ENCFF987UMF/ 298289507 Kevin White, UChicago 44e1f9a37027e992fc71b59c5e962a2b https://www.encodeproject.org/files/ENCFF129FVM/@@download/ENCFF129FVM.bam released s3://encode-public/2016/10/18/b89444b6-6613-48d5-a3c9-e0810d1c2be7/ENCFF129FVM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF580QPD bam bam alignments ce11 ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF351ZPR/, /files/ENCFF447YCW/, /files/ENCFF586MOL/ 298579113 Kevin White, UChicago 499d4255d6229ee511204af6d0dbe157 https://www.encodeproject.org/files/ENCFF580QPD/@@download/ENCFF580QPD.bam released s3://encode-public/2016/10/18/9804780d-7ab3-4d4f-a17d-9a045f132ff9/ENCFF580QPD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF599ZZJ bigWig bigWig signal of unique reads ce10 ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF129FVM/ 10016491 Kevin White, UChicago ef4292ced1cdce9b1b7953fb6b2e2a00 https://www.encodeproject.org/files/ENCFF599ZZJ/@@download/ENCFF599ZZJ.bigWig released s3://encode-public/2016/10/20/6a2531fa-cd37-4de5-96ec-f8dd16b4efb9/ENCFF599ZZJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF118WVO bigWig bigWig read-depth normalized signal ce10 ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF129FVM/ 10043499 Kevin White, UChicago 7c2d8591ef024d6db759071fa07f0948 https://www.encodeproject.org/files/ENCFF118WVO/@@download/ENCFF118WVO.bigWig released s3://encode-public/2016/10/20/76e840c6-1edc-4b18-8e14-777d5cd83a64/ENCFF118WVO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF997YNS bigWig bigWig read-depth normalized signal ce11 ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF580QPD/ 10041279 Kevin White, UChicago bd5ebe9ba231150a23c820ce388cf602 https://www.encodeproject.org/files/ENCFF997YNS/@@download/ENCFF997YNS.bigWig released s3://encode-public/2016/10/20/39600979-8b4c-4062-bdab-08147f3bba7e/ENCFF997YNS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF437AMX bigWig bigWig signal of unique reads ce11 ENCSR042ZGM Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF580QPD/ 10013781 Kevin White, UChicago 2a6d1fb181eb843837910c7e51b71d1f https://www.encodeproject.org/files/ENCFF437AMX/@@download/ENCFF437AMX.bigWig released s3://encode-public/2016/10/20/a2474ce9-bfd2-4b9f-be9f-aa3096b809df/ENCFF437AMX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF968ICP fastq fastq reads ENCSR693GOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 2919871515 Richard Myers, HAIB e17b6b4d9fe2124a6e1bd6e1ef7a7e96 SRA:SRR14107928 https://www.encodeproject.org/files/ENCFF968ICP/@@download/ENCFF968ICP.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2018/11/29/e39450da-7015-4866-a53d-eef51020f66b/ENCFF968ICP.fastq.gz mild to moderate bottlenecking ENCFF959XDT bam bam alignments GRCh38 ENCSR693GOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF968ICP/ 1419284673 ENCODE Processing Pipeline b43efae400f50b545177efc2b1c7a72b https://www.encodeproject.org/files/ENCFF959XDT/@@download/ENCFF959XDT.bam released s3://encode-public/2020/04/20/2a209b14-4243-4c53-834c-87b36c90c2db/ENCFF959XDT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF063YKZ bam bam unfiltered alignments GRCh38 ENCSR693GOR Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF968ICP/ 2613415782 ENCODE Processing Pipeline 6cf64b50786be4d5ec1814ec56d32563 https://www.encodeproject.org/files/ENCFF063YKZ/@@download/ENCFF063YKZ.bam released s3://encode-public/2020/04/20/5b1bc2c7-e421-498a-8ef9-230e4dffc00e/ENCFF063YKZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF722JKF fastq fastq reads ENCSR207GLV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4152/'], '@type': ['Target', 'Item'], 'name': 'MBD1-human', 'label': 'MBD1', '@id': '/targets/MBD1-human/', 'title': 'MBD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '75657918-c10b-43d5-b853-7adfe53c8f26', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF062EOV/ 2713375889 Michael Snyder, Stanford b8962e0376aa4d497b8155ec2c50d9c4 SRA:SRR14829321 https://www.encodeproject.org/files/ENCFF722JKF/@@download/ENCFF722JKF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/21/56034bd3-154e-45c6-b660-8843ddc0e5a8/ENCFF722JKF.fastq.gz mild to moderate bottlenecking ENCFF062EOV fastq fastq reads ENCSR207GLV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4152/'], '@type': ['Target', 'Item'], 'name': 'MBD1-human', 'label': 'MBD1', '@id': '/targets/MBD1-human/', 'title': 'MBD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '75657918-c10b-43d5-b853-7adfe53c8f26', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF722JKF/ 3273427571 Michael Snyder, Stanford 79fd50294d135222fb5ed03651837b77 SRA:SRR14829321 https://www.encodeproject.org/files/ENCFF062EOV/@@download/ENCFF062EOV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/21/99edebf5-3839-4c6d-8c63-27e98506da4c/ENCFF062EOV.fastq.gz mild to moderate bottlenecking ENCFF278DOV bam bam unfiltered alignments GRCh38 ENCSR207GLV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4152/'], '@type': ['Target', 'Item'], 'name': 'MBD1-human', 'label': 'MBD1', '@id': '/targets/MBD1-human/', 'title': 'MBD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '75657918-c10b-43d5-b853-7adfe53c8f26', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF722JKF/, /files/ENCFF062EOV/ 5789654236 ENCODE Processing Pipeline 50def347ffc45b0f7fcbc9b71670c1ee https://www.encodeproject.org/files/ENCFF278DOV/@@download/ENCFF278DOV.bam released s3://encode-public/2020/05/15/cc606dc8-f961-4d77-ad44-e1036ad22e54/ENCFF278DOV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF459WRQ bam bam alignments GRCh38 ENCSR207GLV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4152/'], '@type': ['Target', 'Item'], 'name': 'MBD1-human', 'label': 'MBD1', '@id': '/targets/MBD1-human/', 'title': 'MBD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '75657918-c10b-43d5-b853-7adfe53c8f26', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF722JKF/, /files/ENCFF062EOV/ 4311758368 ENCODE Processing Pipeline d376e5d1a5aa269880f5346c49f1bd2a https://www.encodeproject.org/files/ENCFF459WRQ/@@download/ENCFF459WRQ.bam released s3://encode-public/2020/05/15/43d18a90-560f-436e-a1a0-e023c13f4dee/ENCFF459WRQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF567TIM fastq fastq reads ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 185481066 Michael Snyder, Stanford 038bc5b14478e5a7d165611848a22865 https://www.encodeproject.org/files/ENCFF567TIM/@@download/ENCFF567TIM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f0f85600-d1e0-458e-bbc3-e5f7a16db6c3/ENCFF567TIM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF848AHA fastq fastq reads ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 188583639 Michael Snyder, Stanford be1b92297a734f0e1ad8d384b06a3fd7 https://www.encodeproject.org/files/ENCFF848AHA/@@download/ENCFF848AHA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2533c4d5-f83d-46d0-9638-ceec9ea192b1/ENCFF848AHA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF371ZUD bam bam alignments ce10 ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF567TIM/, /files/ENCFF848AHA/, /files/ENCFF987UMF/ 390103796 Kevin White, UChicago 1915e4e82318c8718120a5efa84014e7 https://www.encodeproject.org/files/ENCFF371ZUD/@@download/ENCFF371ZUD.bam released s3://encode-public/2016/10/18/be138761-5d47-4af1-b459-03ccfcfb00e8/ENCFF371ZUD.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF253WME bam bam alignments ce11 ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF567TIM/, /files/ENCFF848AHA/, /files/ENCFF586MOL/ 390415342 Kevin White, UChicago b75d67a8f4398c744132b41b1bd98a30 https://www.encodeproject.org/files/ENCFF253WME/@@download/ENCFF253WME.bam released s3://encode-public/2016/10/19/1ab90213-da93-4411-9d83-0b18e1bb9c96/ENCFF253WME.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF951CJZ bigWig bigWig read-depth normalized signal ce10 ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF371ZUD/ 10031036 Kevin White, UChicago 3f5c0be02b41d1e8b7bad3c7a7f616cd https://www.encodeproject.org/files/ENCFF951CJZ/@@download/ENCFF951CJZ.bigWig released s3://encode-public/2016/10/20/df29c183-e0be-4374-b215-7954d92ec849/ENCFF951CJZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF672EWZ bigWig bigWig signal of unique reads ce10 ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF371ZUD/ 10002791 Kevin White, UChicago c434daa4e17d34f95de76b7c50028a4d https://www.encodeproject.org/files/ENCFF672EWZ/@@download/ENCFF672EWZ.bigWig released s3://encode-public/2016/10/20/164e6a90-9a0b-4301-ad5a-a0298b04e75b/ENCFF672EWZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF302XIG bigWig bigWig read-depth normalized signal ce11 ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF253WME/ 10030060 Kevin White, UChicago 6604abb6fde19fde8482477324d7f788 https://www.encodeproject.org/files/ENCFF302XIG/@@download/ENCFF302XIG.bigWig released s3://encode-public/2016/10/21/71841661-2383-44e9-a8f0-1c0e9d84c6ed/ENCFF302XIG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF166HBD bigWig bigWig signal of unique reads ce11 ENCSR916UPC Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF253WME/ 9994363 Kevin White, UChicago f0d15b2d2e77328882fcf7e9c8adff7d https://www.encodeproject.org/files/ENCFF166HBD/@@download/ENCFF166HBD.bigWig released s3://encode-public/2016/10/21/84493ab0-fc0d-412a-9efc-7e8fb9b98eba/ENCFF166HBD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF750VWE fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 477502108 Bradley Bernstein, Broad e9c7b9f53d1028692b65551f525f77a7 SRA:SRR14107348 https://www.encodeproject.org/files/ENCFF750VWE/@@download/ENCFF750VWE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b91ce0c9-4082-4abc-a4f8-a89c74b9f2cd/ENCFF750VWE.fastq.gz ENCFF064PBI fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic 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in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 395008537 Bradley Bernstein, Broad 035facc9e651c326548b0c09fb10ad04 SRA:SRR14107361 https://www.encodeproject.org/files/ENCFF326FNS/@@download/ENCFF326FNS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2f7a34c5-e8a7-43ea-949c-18e88cba2c73/ENCFF326FNS.fastq.gz ENCFF517IPB fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 392711066 Bradley Bernstein, Broad 7e7e76be2877eff79ae3fcc7566eaef7 SRA:SRR14107356 https://www.encodeproject.org/files/ENCFF517IPB/@@download/ENCFF517IPB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4df4ec13-3f9c-4b29-8093-28f6262b0d40/ENCFF517IPB.fastq.gz ENCFF755VGR fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in 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differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 490044891 Bradley Bernstein, Broad afd5103dcfa9b535492fdca720d350d3 SRA:SRR14107349 https://www.encodeproject.org/files/ENCFF324BGQ/@@download/ENCFF324BGQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/aed9d905-8d71-4946-8075-09f6240fc67f/ENCFF324BGQ.fastq.gz ENCFF753CLH fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 395804280 Bradley Bernstein, Broad 5ed8e986432c8b6795e21b69df12ed66 SRA:SRR14107358 https://www.encodeproject.org/files/ENCFF753CLH/@@download/ENCFF753CLH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8ae2b33e-9618-4678-9df0-c2f8736f2821/ENCFF753CLH.fastq.gz ENCFF231IOI fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro 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differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 484194681 Bradley Bernstein, Broad 9415b51874090bbb0f6d0648127c8325 SRA:SRR14107351 https://www.encodeproject.org/files/ENCFF276MWP/@@download/ENCFF276MWP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/0ba179f4-eb6a-4316-b7de-990735872f7b/ENCFF276MWP.fastq.gz ENCFF395LTZ fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 428025308 Bradley Bernstein, Broad 005bfd115f29586de134d677d69dc508 SRA:SRR14107355 https://www.encodeproject.org/files/ENCFF395LTZ/@@download/ENCFF395LTZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/af20b10e-1d5c-4205-9468-b7366688fab8/ENCFF395LTZ.fastq.gz ENCFF337NAL fastq fastq reads ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro 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s3://encode-public/2020/06/14/c3186842-f048-429f-b84f-facc2911c4f0/ENCFF575YCL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF121JWB bam bam alignments GRCh38 ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF329SZI/, /files/ENCFF434BPW/, /files/ENCFF395LTZ/, /files/ENCFF604UUW/, /files/ENCFF755VGR/, /files/ENCFF337NAL/, /files/ENCFF110MCL/, /files/ENCFF326FNS/, /files/ENCFF064PBI/ 2701877074 ENCODE Processing Pipeline 59e3c9c737107b5bfdacc6af11c84716 https://www.encodeproject.org/files/ENCFF121JWB/@@download/ENCFF121JWB.bam released s3://encode-public/2020/06/14/da6e5fcd-a6a1-4b81-ae4d-f647f642f3bb/ENCFF121JWB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF226HGP bam bam unfiltered alignments GRCh38 ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF329SZI/, /files/ENCFF434BPW/, /files/ENCFF395LTZ/, /files/ENCFF604UUW/, /files/ENCFF755VGR/, /files/ENCFF337NAL/, /files/ENCFF110MCL/, /files/ENCFF326FNS/, /files/ENCFF064PBI/ 3170849304 ENCODE Processing Pipeline 9047fa8e2b275daa05c74d2812bfb5b4 https://www.encodeproject.org/files/ENCFF226HGP/@@download/ENCFF226HGP.bam released s3://encode-public/2020/06/14/a7a94188-6af4-4fee-95f0-05dcc948f566/ENCFF226HGP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF873MUU bam bam unfiltered alignments GRCh38 ENCSR394CIG Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000169 type B pancreatic cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF276MWP/, /files/ENCFF275MDX/, /files/ENCFF517IPB/, /files/ENCFF775JPE/, /files/ENCFF110MCL/, /files/ENCFF753CLH/, /files/ENCFF324BGQ/, /files/ENCFF750VWE/, /files/ENCFF231IOI/ 3408606780 ENCODE Processing Pipeline 38fb99b26821be386e744a38e6ea5800 https://www.encodeproject.org/files/ENCFF873MUU/@@download/ENCFF873MUU.bam released s3://encode-public/2020/06/14/4c98a992-6097-4b96-8323-b9a0f790e137/ENCFF873MUU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF670JGW fastq fastq reads ENCSR481DSF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23598/'], '@type': ['Target', 'Item'], 'name': 'PATZ1-human', 'label': 'PATZ1', '@id': '/targets/PATZ1-human/', 'title': 'PATZ1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d469e27-b00c-4379-ad2d-97e3182466d4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF882IPX/ 2410683161 Michael Snyder, Stanford ea60e43f460fbb846ba1b4eb2c8a4376 SRA:SRR14638835 https://www.encodeproject.org/files/ENCFF670JGW/@@download/ENCFF670JGW.fastq.gz Illumina HiSeq 4000 /files/ENCFF196BCK/ released s3://encode-public/2019/01/07/e394eda3-cb6d-4964-8880-313562d3b5a1/ENCFF670JGW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF882IPX fastq fastq reads ENCSR481DSF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23598/'], '@type': ['Target', 'Item'], 'name': 'PATZ1-human', 'label': 'PATZ1', '@id': '/targets/PATZ1-human/', 'title': 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bottlenecking, moderate library complexity ENCFF197MJX fastq fastq reads ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 single-ended 1447545684 Xiang-Dong Fu, UCSD 0efc7efd74f2020f06d75781571a0392 SRA:SRR14104023 https://www.encodeproject.org/files/ENCFF197MJX/@@download/ENCFF197MJX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/19eb336a-5597-4dcd-a6ab-91602ac46f62/ENCFF197MJX.fastq.gz low read length ENCFF011ZUM fastq fastq reads ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 single-ended 1589862928 Xiang-Dong Fu, UCSD 50a95250870ff3325d6d6d7e04dd0208 SRA:SRR14104022 https://www.encodeproject.org/files/ENCFF011ZUM/@@download/ENCFF011ZUM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/11/122087a6-699b-462f-86a6-c52537bc7a7b/ENCFF011ZUM.fastq.gz low read length ENCFF096KCE bam bam alignments hg19 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF011ZUM/, /files/ENCFF807MUK/ 1704451910 ENCODE Processing Pipeline dbaefb67fa4fd15a9bbcbe25e1b91d9a https://www.encodeproject.org/files/ENCFF096KCE/@@download/ENCFF096KCE.bam released s3://encode-public/2015/11/12/2bac9030-6c9a-4fc1-96f9-3fcb1fa10670/ENCFF096KCE.bam ENCODE3 hg19 archived low read length ENCFF154PCC bam bam alignments hg19 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF197MJX/ 1618488792 ENCODE Processing Pipeline 2cab199cc123f64561e19409667bc188 https://www.encodeproject.org/files/ENCFF154PCC/@@download/ENCFF154PCC.bam released s3://encode-public/2015/11/12/26b7572f-41f6-4815-bca4-3c9b3bf3b653/ENCFF154PCC.bam ENCODE3 hg19 archived low read length ENCFF120QOW bam bam unfiltered alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF197MJX/ 2063585373 ENCODE Processing Pipeline 355f3cd67d305122146a4ad8b410a376 https://www.encodeproject.org/files/ENCFF120QOW/@@download/ENCFF120QOW.bam released s3://encode-public/2016/05/06/8f451cab-35f2-4fa1-8a80-58dc29a21e42/ENCFF120QOW.bam ENCODE3 GRCh38 archived low read length ENCFF952YHB bam bam unfiltered alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF011ZUM/, /files/ENCFF643CGH/ 2264378770 ENCODE Processing Pipeline 3ae295620a9bd9a84cb3b42eb78595df https://www.encodeproject.org/files/ENCFF952YHB/@@download/ENCFF952YHB.bam released s3://encode-public/2016/05/06/a7c6359e-3eb5-4a2d-b18d-8ccadece950e/ENCFF952YHB.bam ENCODE3 GRCh38 archived low read length ENCFF629YZR bam bam alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF197MJX/ 1617049419 ENCODE Processing Pipeline 682feab5e03066182be2acfe70117dbd https://www.encodeproject.org/files/ENCFF629YZR/@@download/ENCFF629YZR.bam released s3://encode-public/2016/05/06/7f609066-d556-43f0-aa80-3f145361568e/ENCFF629YZR.bam ENCODE3 GRCh38 archived low read length ENCFF563YRA bam bam alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF011ZUM/, /files/ENCFF643CGH/ 1703080442 ENCODE Processing Pipeline d143e0b09c854d52e3714248f0b7828c https://www.encodeproject.org/files/ENCFF563YRA/@@download/ENCFF563YRA.bam released s3://encode-public/2016/05/06/ab40db52-046f-46f8-9971-70ea5b7739c2/ENCFF563YRA.bam ENCODE3 GRCh38 archived low read length ENCFF818ZRR bam bam unfiltered alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF197MJX/, /files/ENCFF110MCL/ 2035866876 ENCODE Processing Pipeline c268b34c572a9cb0dece0a9a01b01109 https://www.encodeproject.org/files/ENCFF818ZRR/@@download/ENCFF818ZRR.bam released s3://encode-public/2020/10/27/2a4132c8-6a68-48f6-86d0-779da355ab6d/ENCFF818ZRR.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF290GVR bam bam unfiltered alignments hg19 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF197MJX/ 2058033976 ENCODE Processing Pipeline 846e044b597db53cd877ce0b0d8ff025 https://www.encodeproject.org/files/ENCFF290GVR/@@download/ENCFF290GVR.bam released s3://encode-public/2018/01/12/bfb4e0ae-8b3e-4c22-84cc-f9dd24e51774/ENCFF290GVR.bam ENCODE3 hg19 archived low read length ENCFF007VMU bam bam unfiltered alignments hg19 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF011ZUM/, /files/ENCFF807MUK/ 2256752570 ENCODE Processing Pipeline d9de70ee5ddf737563d3c4b4a474c61e https://www.encodeproject.org/files/ENCFF007VMU/@@download/ENCFF007VMU.bam released s3://encode-public/2018/01/12/871faf5b-9885-449f-a343-672ae2df867c/ENCFF007VMU.bam ENCODE3 hg19 archived low read length ENCFF292YYU bam bam unfiltered alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF011ZUM/, /files/ENCFF110MCL/ 2230362256 ENCODE Processing Pipeline 8a58c8232b58704234c62820a82fe787 https://www.encodeproject.org/files/ENCFF292YYU/@@download/ENCFF292YYU.bam released s3://encode-public/2020/10/27/b19b439a-5784-4174-a231-b3872c548ce1/ENCFF292YYU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF918AQS bam bam alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 1 1_1 40 /files/ENCFF197MJX/, /files/ENCFF110MCL/ 1660079447 ENCODE Processing Pipeline cfc57835f15a6bf8aaa26f0ebfce3688 https://www.encodeproject.org/files/ENCFF918AQS/@@download/ENCFF918AQS.bam released s3://encode-public/2020/10/27/31b33b7c-4a14-45a9-aff8-4b1a090478dd/ENCFF918AQS.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF043KRZ bam bam alignments GRCh38 ENCSR079WWH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-17 ENCODE 200-400 2 2_1 40 /files/ENCFF011ZUM/, /files/ENCFF110MCL/ 1781298182 ENCODE Processing Pipeline bfd4af6be245039efc61ec3d528f8391 https://www.encodeproject.org/files/ENCFF043KRZ/@@download/ENCFF043KRZ.bam released s3://encode-public/2020/10/27/0c5e3af2-8152-4b80-a598-a79c9c6d9f1a/ENCFF043KRZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF454QNS fastq fastq reads ENCSR000SND Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-743'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/169792/'], '@type': ['Target', 'Item'], 'name': 'GLIS3-human', 'label': 'GLIS3', '@id': '/targets/GLIS3-human/', 'title': 'GLIS3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'df085fd7-80ae-4f4d-8238-0ec2d173f510', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF832DTE/ 2270549090 Michael Snyder, Stanford 7604323c8445d2373969a31374a8c9be https://www.encodeproject.org/files/ENCFF454QNS/@@download/ENCFF454QNS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/676c6899-472c-4e21-ab5e-7c677cb1050d/ENCFF454QNS.fastq.gz mild to moderate bottlenecking ENCFF832DTE fastq fastq reads ENCSR000SND Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-743'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/169792/'], '@type': ['Target', 'Item'], 'name': 'GLIS3-human', 'label': 'GLIS3', '@id': '/targets/GLIS3-human/', 'title': 'GLIS3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'df085fd7-80ae-4f4d-8238-0ec2d173f510', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF454QNS/ 2405082628 Michael Snyder, Stanford 84c110334087f33341ab71e12636f7a4 https://www.encodeproject.org/files/ENCFF832DTE/@@download/ENCFF832DTE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/19d93d63-9d42-467a-b642-b8373d80f081/ENCFF832DTE.fastq.gz mild to moderate bottlenecking ENCFF459KVU bam bam alignments GRCh38 ENCSR000SND Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-743'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/169792/'], '@type': ['Target', 'Item'], 'name': 'GLIS3-human', 'label': 'GLIS3', '@id': '/targets/GLIS3-human/', 'title': 'GLIS3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'df085fd7-80ae-4f4d-8238-0ec2d173f510', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF454QNS/, /files/ENCFF832DTE/ 3215209819 ENCODE Processing Pipeline 6888b4235b9fbb2f6483202e0b967528 https://www.encodeproject.org/files/ENCFF459KVU/@@download/ENCFF459KVU.bam released s3://encode-public/2020/04/20/20d87145-868e-4364-9770-bd224aefd210/ENCFF459KVU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF029GEG bam bam unfiltered alignments GRCh38 ENCSR000SND Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-743'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/169792/'], '@type': ['Target', 'Item'], 'name': 'GLIS3-human', 'label': 'GLIS3', '@id': '/targets/GLIS3-human/', 'title': 'GLIS3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'df085fd7-80ae-4f4d-8238-0ec2d173f510', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF454QNS/, /files/ENCFF832DTE/ 4498291571 ENCODE Processing Pipeline f56bcb5d65ef4dc3d64014b89e369a6b https://www.encodeproject.org/files/ENCFF029GEG/@@download/ENCFF029GEG.bam released s3://encode-public/2020/04/20/077a7c72-284e-4be8-b412-df51b66ac20f/ENCFF029GEG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF607QVJ fastq fastq reads ENCSR843PNA Control ChIP-seq /fly-donors/ENCDO107VDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36170/'], '@type': ['Target', 'Item'], 'name': 'CG12391-dmelanogaster', 'label': 'CG12391', '@id': '/targets/CG12391-dmelanogaster/', 'title': 'CG12391 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '490d6f3a-b92b-4606-af1a-25fb2e34fbf8', 'status': 'released'} dm3 2R 7027840 7048400 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1425622800 Kevin White, UChicago e51aa5edee4f3bec4c7ffcbe95a2cac0 https://www.encodeproject.org/files/ENCFF607QVJ/@@download/ENCFF607QVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/d6caa177-5e76-4603-a1ac-57200db7e0c1/ENCFF607QVJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF889HXA bam bam alignments dm6 ENCSR843PNA Control ChIP-seq /fly-donors/ENCDO107VDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36170/'], '@type': ['Target', 'Item'], 'name': 'CG12391-dmelanogaster', 'label': 'CG12391', '@id': '/targets/CG12391-dmelanogaster/', 'title': 'CG12391 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '490d6f3a-b92b-4606-af1a-25fb2e34fbf8', 'status': 'released'} dm3 2R 7027840 7048400 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF607QVJ/, /files/ENCFF479RCH/ 1906388481 Kevin White, UChicago 38320db8f59a06f172fd19858f1a7737 https://www.encodeproject.org/files/ENCFF889HXA/@@download/ENCFF889HXA.bam released s3://encode-public/2018/12/07/cfb6c87b-d3e6-4921-a452-5b6535d2d6eb/ENCFF889HXA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF935EVK bigWig bigWig signal of unique reads dm6 ENCSR843PNA Control ChIP-seq /fly-donors/ENCDO107VDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36170/'], '@type': ['Target', 'Item'], 'name': 'CG12391-dmelanogaster', 'label': 'CG12391', '@id': '/targets/CG12391-dmelanogaster/', 'title': 'CG12391 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '490d6f3a-b92b-4606-af1a-25fb2e34fbf8', 'status': 'released'} dm3 2R 7027840 7048400 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF889HXA/ 17904618 Kevin White, UChicago 100d0ad43ae619a51b17b37c689518ab https://www.encodeproject.org/files/ENCFF935EVK/@@download/ENCFF935EVK.bigWig released s3://encode-public/2018/12/10/613a54c7-58aa-4c9b-a080-a519bbdd2685/ENCFF935EVK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF483LGF bigWig bigWig read-depth normalized signal dm6 ENCSR843PNA Control ChIP-seq /fly-donors/ENCDO107VDC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36170/'], '@type': ['Target', 'Item'], 'name': 'CG12391-dmelanogaster', 'label': 'CG12391', '@id': '/targets/CG12391-dmelanogaster/', 'title': 'CG12391 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '490d6f3a-b92b-4606-af1a-25fb2e34fbf8', 'status': 'released'} dm3 2R 7027840 7048400 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF889HXA/ 17837425 Kevin White, UChicago 41ae76a699db5ad9a5c4a79dafbd5bc4 https://www.encodeproject.org/files/ENCFF483LGF/@@download/ENCFF483LGF.bigWig released s3://encode-public/2018/12/10/e5522463-dfcb-4ef2-971c-8cbbb4c06c3f/ENCFF483LGF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF913JVQ fastq fastq reads ENCSR700IEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_1 50 single-ended 2954808674 Richard Myers, HAIB 629530a2780e206d350574846ab8b1d0 https://www.encodeproject.org/files/ENCFF913JVQ/@@download/ENCFF913JVQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/17/5e50c9ce-a124-4fc8-b8f9-b87aac355bf4/ENCFF913JVQ.fastq.gz ENCFF292LYW bam bam unfiltered alignments GRCh38 ENCSR700IEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF913JVQ/ 3156868516 ENCODE Processing Pipeline a7f4a642e8d72a3a3e730e1929326c59 https://www.encodeproject.org/files/ENCFF292LYW/@@download/ENCFF292LYW.bam released s3://encode-public/2016/05/06/64a6d643-f89b-452e-a461-c62faba8eefa/ENCFF292LYW.bam ENCODE3 GRCh38 archived ENCFF162ZOO bam bam alignments GRCh38 ENCSR700IEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF913JVQ/ 2400011184 ENCODE Processing Pipeline 03f71eb33dabfd5a474b9eea0120ace4 https://www.encodeproject.org/files/ENCFF162ZOO/@@download/ENCFF162ZOO.bam released s3://encode-public/2016/05/06/ff65f000-58b0-47f2-bcdd-f0e478fd61c1/ENCFF162ZOO.bam ENCODE3 GRCh38 archived ENCFF749OCS bam bam unfiltered alignments hg19 ENCSR700IEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF913JVQ/ 3144449613 ENCODE Processing Pipeline 2ff9385fa8fb29f37ec8661ac42cf9ce https://www.encodeproject.org/files/ENCFF749OCS/@@download/ENCFF749OCS.bam released s3://encode-public/2016/08/23/3bff9013-a498-487f-b0ab-ea50f0ff299a/ENCFF749OCS.bam ENCODE3 hg19 archived ENCFF444TNY bam bam alignments hg19 ENCSR700IEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF913JVQ/ 2399950596 ENCODE Processing Pipeline 952a53f4fbe81dd2befd8f8189a1a639 https://www.encodeproject.org/files/ENCFF444TNY/@@download/ENCFF444TNY.bam released s3://encode-public/2016/08/23/63155a0f-3a26-4c90-8fbe-63e051a55e61/ENCFF444TNY.bam ENCODE3 hg19 archived ENCFF157NAG bam bam unfiltered alignments GRCh38 ENCSR700IEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF913JVQ/, /files/ENCFF110MCL/ 3125878403 ENCODE Processing Pipeline 2ebce2f4438f193c5680c37c1902dcdd https://www.encodeproject.org/files/ENCFF157NAG/@@download/ENCFF157NAG.bam released s3://encode-public/2020/11/05/529a475e-5984-4ca4-8950-c912f218c72f/ENCFF157NAG.bam ENCODE4 v1.6.1 GRCh38 released ENCFF142XLB bam bam alignments GRCh38 ENCSR700IEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2015-11-13 ENCODE sonication (generic) 100-500 10 10_1 50 /files/ENCFF913JVQ/, /files/ENCFF110MCL/ 2491220616 ENCODE Processing Pipeline ce83d284d57962dd1217ebcef2e13dde https://www.encodeproject.org/files/ENCFF142XLB/@@download/ENCFF142XLB.bam released s3://encode-public/2020/11/05/e33b4ea4-ec8b-4bec-a22b-4ffad50fb6a1/ENCFF142XLB.bam ENCODE4 v1.6.1 GRCh38 released ENCFF536XZG fastq fastq reads ENCSR414VZP Control ChIP-seq /fly-donors/ENCDO155GHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35227/'], '@type': ['Target', 'Item'], 'name': 'tj-dmelanogaster', 'label': 'tj', '@id': '/targets/tj-dmelanogaster/', 'title': 'tj (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6aa44cd5-fb43-4f19-ac0b-e187fceb4348', 'status': 'released'} dm3 2L 19414878 19515104 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 447481715 Kevin White, UChicago e3651c11eb1530769a32c94fb8a695ca https://www.encodeproject.org/files/ENCFF536XZG/@@download/ENCFF536XZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/efcddcf1-532e-467f-8dba-bc90706373f6/ENCFF536XZG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF349UIJ bam bam alignments dm6 ENCSR414VZP Control ChIP-seq /fly-donors/ENCDO155GHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35227/'], '@type': ['Target', 'Item'], 'name': 'tj-dmelanogaster', 'label': 'tj', '@id': '/targets/tj-dmelanogaster/', 'title': 'tj (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6aa44cd5-fb43-4f19-ac0b-e187fceb4348', 'status': 'released'} dm3 2L 19414878 19515104 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF536XZG/, /files/ENCFF479RCH/ 555948030 Kevin White, UChicago 2040e1dccfbc213167c54fb0a28dc603 https://www.encodeproject.org/files/ENCFF349UIJ/@@download/ENCFF349UIJ.bam released s3://encode-public/2016/12/23/833994d0-3286-40ee-bcd9-4ebec1a71403/ENCFF349UIJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF709ABH bam bam alignments dm3 ENCSR414VZP Control ChIP-seq /fly-donors/ENCDO155GHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35227/'], '@type': ['Target', 'Item'], 'name': 'tj-dmelanogaster', 'label': 'tj', '@id': '/targets/tj-dmelanogaster/', 'title': 'tj (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6aa44cd5-fb43-4f19-ac0b-e187fceb4348', 'status': 'released'} dm3 2L 19414878 19515104 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF536XZG/, /files/ENCFF059UHX/ 562444660 Kevin White, UChicago 69a9115d2244d598bf6acb1b402adba8 https://www.encodeproject.org/files/ENCFF709ABH/@@download/ENCFF709ABH.bam released s3://encode-public/2016/12/23/ada89c81-d068-4c67-be8c-bd948fa3d80b/ENCFF709ABH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF938ACY bigWig bigWig read-depth normalized signal dm3 ENCSR414VZP Control ChIP-seq /fly-donors/ENCDO155GHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35227/'], '@type': ['Target', 'Item'], 'name': 'tj-dmelanogaster', 'label': 'tj', '@id': '/targets/tj-dmelanogaster/', 'title': 'tj (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6aa44cd5-fb43-4f19-ac0b-e187fceb4348', 'status': 'released'} dm3 2L 19414878 19515104 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF709ABH/ 14991966 Kevin White, UChicago 1e3c7b70272366d040f5e1c749a398e2 https://www.encodeproject.org/files/ENCFF938ACY/@@download/ENCFF938ACY.bigWig released s3://encode-public/2017/01/03/dab922eb-c781-4c1d-ac99-9d0aff0f970a/ENCFF938ACY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF708OZR bigWig bigWig signal of unique reads dm3 ENCSR414VZP Control ChIP-seq /fly-donors/ENCDO155GHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35227/'], '@type': ['Target', 'Item'], 'name': 'tj-dmelanogaster', 'label': 'tj', '@id': '/targets/tj-dmelanogaster/', 'title': 'tj (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6aa44cd5-fb43-4f19-ac0b-e187fceb4348', 'status': 'released'} dm3 2L 19414878 19515104 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF709ABH/ 14996797 Kevin White, UChicago 10eecc68574d68e65e1a3287796d9fbc https://www.encodeproject.org/files/ENCFF708OZR/@@download/ENCFF708OZR.bigWig released s3://encode-public/2017/01/03/2195742b-c144-4a98-99e5-9359a43d6210/ENCFF708OZR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF686GFA bigWig bigWig signal of unique reads dm6 ENCSR414VZP Control ChIP-seq /fly-donors/ENCDO155GHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35227/'], '@type': ['Target', 'Item'], 'name': 'tj-dmelanogaster', 'label': 'tj', '@id': '/targets/tj-dmelanogaster/', 'title': 'tj (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6aa44cd5-fb43-4f19-ac0b-e187fceb4348', 'status': 'released'} dm3 2L 19414878 19515104 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF349UIJ/ 16980781 Kevin White, UChicago 57f357e8b8bc6eff0e56d66824bbdc42 https://www.encodeproject.org/files/ENCFF686GFA/@@download/ENCFF686GFA.bigWig released s3://encode-public/2017/01/04/939ee532-dcf7-4fcd-a951-bfc9e14736e2/ENCFF686GFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF728PAK bigWig bigWig read-depth normalized signal dm6 ENCSR414VZP Control ChIP-seq /fly-donors/ENCDO155GHX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35227/'], '@type': ['Target', 'Item'], 'name': 'tj-dmelanogaster', 'label': 'tj', '@id': '/targets/tj-dmelanogaster/', 'title': 'tj (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6aa44cd5-fb43-4f19-ac0b-e187fceb4348', 'status': 'released'} dm3 2L 19414878 19515104 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF349UIJ/ 16971359 Kevin White, UChicago e2e8bfb1e91b2e11459f660525ce649b https://www.encodeproject.org/files/ENCFF728PAK/@@download/ENCFF728PAK.bigWig released s3://encode-public/2017/01/04/eafc9e89-65b6-4def-bddd-4f31a0081a2c/ENCFF728PAK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF837THB fastq fastq reads ENCSR682TOC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/85460/'], '@type': ['Target', 'Item'], 'name': 'ZNF518B-human', 'label': 'ZNF518B', '@id': '/targets/ZNF518B-human/', 'title': 'ZNF518B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c9aab077-b7a3-4886-8089-9531bef04067', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF839RKY/ 2385142997 Michael Snyder, Stanford 2406241de6279bc0e535c848aa2a05cb SRA:SRR14839327 https://www.encodeproject.org/files/ENCFF837THB/@@download/ENCFF837THB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/13/f30df97a-dfdf-4dee-a5f8-8f1c02acb0b2/ENCFF837THB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF839RKY fastq fastq reads ENCSR682TOC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/85460/'], '@type': ['Target', 'Item'], 'name': 'ZNF518B-human', 'label': 'ZNF518B', '@id': '/targets/ZNF518B-human/', 'title': 'ZNF518B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c9aab077-b7a3-4886-8089-9531bef04067', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF837THB/ 2884664789 Michael Snyder, Stanford 88954136ebb4aee474a349fec5e3a213 SRA:SRR14839327 https://www.encodeproject.org/files/ENCFF839RKY/@@download/ENCFF839RKY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/13/41087fba-2eb3-431b-9872-35718bb0a624/ENCFF839RKY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF436HIJ bam bam unfiltered alignments GRCh38 ENCSR682TOC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/85460/'], '@type': ['Target', 'Item'], 'name': 'ZNF518B-human', 'label': 'ZNF518B', '@id': '/targets/ZNF518B-human/', 'title': 'ZNF518B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c9aab077-b7a3-4886-8089-9531bef04067', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF837THB/, /files/ENCFF839RKY/ 4923868411 ENCODE Processing Pipeline 4634d9730fc1c33f830772b98728ad23 https://www.encodeproject.org/files/ENCFF436HIJ/@@download/ENCFF436HIJ.bam released s3://encode-public/2020/04/20/4eba6a60-d54c-4ebc-a5d7-76f225e24186/ENCFF436HIJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF875OBB bam bam alignments GRCh38 ENCSR682TOC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/85460/'], '@type': ['Target', 'Item'], 'name': 'ZNF518B-human', 'label': 'ZNF518B', '@id': '/targets/ZNF518B-human/', 'title': 'ZNF518B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c9aab077-b7a3-4886-8089-9531bef04067', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF837THB/, /files/ENCFF839RKY/ 3236991170 ENCODE Processing Pipeline da2bca92a87d7a7ded28b0827b3626c1 https://www.encodeproject.org/files/ENCFF875OBB/@@download/ENCFF875OBB.bam released s3://encode-public/2020/04/20/839da0c9-0e5c-4ed4-a93a-a77e179a098e/ENCFF875OBB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF239ARF fastq fastq reads ENCSR236JJO Control ChIP-seq /fly-donors/ENCDO457KKZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40794/'], '@type': ['Target', 'Item'], 'name': 'CG9727-dmelanogaster', 'label': 'CG9727', '@id': '/targets/CG9727-dmelanogaster/', 'title': 'CG9727 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '89e2151c-3c20-44f8-9d0f-9c0dfba94ce5', 'status': 'released'} dm3 3R 6443163 6465448 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1002496710 Kevin White, UChicago 0dd14a5f0b966c4a3296fd9077a155c3 https://www.encodeproject.org/files/ENCFF239ARF/@@download/ENCFF239ARF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/a909dac2-dc45-47db-bf96-3d2233f3aa45/ENCFF239ARF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF282RTG bam bam alignments dm3 ENCSR236JJO Control ChIP-seq /fly-donors/ENCDO457KKZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40794/'], '@type': ['Target', 'Item'], 'name': 'CG9727-dmelanogaster', 'label': 'CG9727', '@id': '/targets/CG9727-dmelanogaster/', 'title': 'CG9727 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '89e2151c-3c20-44f8-9d0f-9c0dfba94ce5', 'status': 'released'} dm3 3R 6443163 6465448 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF239ARF/, /files/ENCFF059UHX/ 1366136726 Kevin White, UChicago 874cafb191908c2e1236f3386ce70904 https://www.encodeproject.org/files/ENCFF282RTG/@@download/ENCFF282RTG.bam released s3://encode-public/2016/12/23/2db39537-7f51-4cfd-9e75-284261fa8161/ENCFF282RTG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF306HYQ bam bam alignments dm6 ENCSR236JJO Control ChIP-seq /fly-donors/ENCDO457KKZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40794/'], '@type': ['Target', 'Item'], 'name': 'CG9727-dmelanogaster', 'label': 'CG9727', '@id': '/targets/CG9727-dmelanogaster/', 'title': 'CG9727 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '89e2151c-3c20-44f8-9d0f-9c0dfba94ce5', 'status': 'released'} dm3 3R 6443163 6465448 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF239ARF/, /files/ENCFF479RCH/ 1354166485 Kevin White, UChicago 572a354c19b711740b2317ad0aa16036 https://www.encodeproject.org/files/ENCFF306HYQ/@@download/ENCFF306HYQ.bam released s3://encode-public/2016/12/23/f1740234-4667-4b16-9312-00a8fe29e6df/ENCFF306HYQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF329DGI bigWig bigWig read-depth normalized signal dm3 ENCSR236JJO Control ChIP-seq /fly-donors/ENCDO457KKZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40794/'], '@type': ['Target', 'Item'], 'name': 'CG9727-dmelanogaster', 'label': 'CG9727', '@id': '/targets/CG9727-dmelanogaster/', 'title': 'CG9727 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '89e2151c-3c20-44f8-9d0f-9c0dfba94ce5', 'status': 'released'} dm3 3R 6443163 6465448 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF282RTG/ 15555811 Kevin White, UChicago d4e0dafb5473754c1cf166c7b2eba1ef https://www.encodeproject.org/files/ENCFF329DGI/@@download/ENCFF329DGI.bigWig released s3://encode-public/2017/01/03/b95c5b83-3ee3-45dc-9894-d0a0d2d1e151/ENCFF329DGI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF441YQE bigWig bigWig signal of unique reads dm3 ENCSR236JJO Control ChIP-seq /fly-donors/ENCDO457KKZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40794/'], '@type': ['Target', 'Item'], 'name': 'CG9727-dmelanogaster', 'label': 'CG9727', '@id': '/targets/CG9727-dmelanogaster/', 'title': 'CG9727 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '89e2151c-3c20-44f8-9d0f-9c0dfba94ce5', 'status': 'released'} dm3 3R 6443163 6465448 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF282RTG/ 15541041 Kevin White, UChicago 0212580f524b49f656bedd16e5f3a5a3 https://www.encodeproject.org/files/ENCFF441YQE/@@download/ENCFF441YQE.bigWig released s3://encode-public/2017/01/03/9a3e14a5-e3bf-4bb6-9e2c-e73085403d98/ENCFF441YQE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF866TZD bigWig bigWig signal of unique reads dm6 ENCSR236JJO Control ChIP-seq /fly-donors/ENCDO457KKZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40794/'], '@type': ['Target', 'Item'], 'name': 'CG9727-dmelanogaster', 'label': 'CG9727', '@id': '/targets/CG9727-dmelanogaster/', 'title': 'CG9727 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '89e2151c-3c20-44f8-9d0f-9c0dfba94ce5', 'status': 'released'} dm3 3R 6443163 6465448 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF306HYQ/ 17609877 Kevin White, UChicago c2426ed850360c0cb3cb53a36850228c https://www.encodeproject.org/files/ENCFF866TZD/@@download/ENCFF866TZD.bigWig released s3://encode-public/2017/01/04/23fba3e2-0950-42ef-8a38-bf30f3df1df6/ENCFF866TZD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF397TKD bigWig bigWig read-depth normalized signal dm6 ENCSR236JJO Control ChIP-seq /fly-donors/ENCDO457KKZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40794/'], '@type': ['Target', 'Item'], 'name': 'CG9727-dmelanogaster', 'label': 'CG9727', '@id': '/targets/CG9727-dmelanogaster/', 'title': 'CG9727 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '89e2151c-3c20-44f8-9d0f-9c0dfba94ce5', 'status': 'released'} dm3 3R 6443163 6465448 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF306HYQ/ 17634324 Kevin White, UChicago 3e917b8d00a5196b8be9c77cedbf2bf4 https://www.encodeproject.org/files/ENCFF397TKD/@@download/ENCFF397TKD.bigWig released s3://encode-public/2017/01/04/07ca026b-5d4e-495e-b3be-28fd27aa9965/ENCFF397TKD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF884FER fastq fastq reads ENCSR232JJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2122/'], '@type': ['Target', 'Item'], 'name': 'MECOM-human', 'label': 'MECOM', '@id': '/targets/MECOM-human/', 'title': 'MECOM (Homo sapiens)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4842c737-ab02-4fe3-be00-8c41e3dd2127', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF429XRR/ 2241639548 Michael Snyder, Stanford f7bcce462d689486c0056025f7fd0da5 SRA:SRR14835522 https://www.encodeproject.org/files/ENCFF884FER/@@download/ENCFF884FER.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/20/b656baac-d7f1-4015-ac71-6c564f92e672/ENCFF884FER.fastq.gz mild to moderate bottlenecking ENCFF429XRR fastq fastq reads ENCSR232JJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2122/'], '@type': ['Target', 'Item'], 'name': 'MECOM-human', 'label': 'MECOM', '@id': '/targets/MECOM-human/', 'title': 'MECOM (Homo sapiens)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4842c737-ab02-4fe3-be00-8c41e3dd2127', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF884FER/ 2813572604 Michael Snyder, Stanford 390ac545c4266dbcc02b9bf32afb75d4 SRA:SRR14835522 https://www.encodeproject.org/files/ENCFF429XRR/@@download/ENCFF429XRR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/20/fdc7d060-f994-499c-af51-ed30edeca0d9/ENCFF429XRR.fastq.gz mild to moderate bottlenecking ENCFF143NPC bam bam alignments GRCh38 ENCSR232JJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2122/'], '@type': ['Target', 'Item'], 'name': 'MECOM-human', 'label': 'MECOM', '@id': '/targets/MECOM-human/', 'title': 'MECOM (Homo sapiens)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4842c737-ab02-4fe3-be00-8c41e3dd2127', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF884FER/, /files/ENCFF429XRR/ 3727926304 ENCODE Processing Pipeline 75f6cab858fc758a0b209921ee4faa0f https://www.encodeproject.org/files/ENCFF143NPC/@@download/ENCFF143NPC.bam released s3://encode-public/2020/05/15/26c1960f-2f49-42e3-8679-7277251fd4db/ENCFF143NPC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF265ROI bam bam unfiltered alignments GRCh38 ENCSR232JJY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2122/'], '@type': ['Target', 'Item'], 'name': 'MECOM-human', 'label': 'MECOM', '@id': '/targets/MECOM-human/', 'title': 'MECOM (Homo sapiens)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4842c737-ab02-4fe3-be00-8c41e3dd2127', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF884FER/, /files/ENCFF429XRR/ 5102499869 ENCODE Processing Pipeline a66de028eb93ba1c5fb3c8ed7eed510e https://www.encodeproject.org/files/ENCFF265ROI/@@download/ENCFF265ROI.bam released s3://encode-public/2020/05/15/324d87eb-4a1b-485f-8380-ac97f9485e8c/ENCFF265ROI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF850ASN fastq fastq reads ENCSR757RQP Control ChIP-seq /fly-donors/ENCDO179KXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35927/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-10-dmelanogaster', 'label': 'Su(var)2-10', '@id': '/targets/Su(var)2-10-dmelanogaster/', 'title': 'Su(var)2-10 (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '2ea776a5-7bc9-45cd-8a18-a59fd524fbb8', 'status': 'released'} dm3 2R 4995787 5018216 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 799747220 Kevin White, UChicago a7aaff99175401ffa1ff9d71ef52d6ee https://www.encodeproject.org/files/ENCFF850ASN/@@download/ENCFF850ASN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/37c43ee3-b923-4b57-a5c7-eb6d0f2957e6/ENCFF850ASN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF195FPW bam bam alignments dm3 ENCSR757RQP Control ChIP-seq /fly-donors/ENCDO179KXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35927/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-10-dmelanogaster', 'label': 'Su(var)2-10', '@id': '/targets/Su(var)2-10-dmelanogaster/', 'title': 'Su(var)2-10 (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '2ea776a5-7bc9-45cd-8a18-a59fd524fbb8', 'status': 'released'} dm3 2R 4995787 5018216 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF850ASN/, /files/ENCFF059UHX/ 1057582389 Kevin White, UChicago 55993a795a4b86a152436dc3b5fd7c9a https://www.encodeproject.org/files/ENCFF195FPW/@@download/ENCFF195FPW.bam released s3://encode-public/2016/12/23/9eaf76de-01ea-436b-9d40-5b3609dc75a8/ENCFF195FPW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF529PWR bam bam alignments dm6 ENCSR757RQP Control ChIP-seq /fly-donors/ENCDO179KXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35927/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-10-dmelanogaster', 'label': 'Su(var)2-10', '@id': '/targets/Su(var)2-10-dmelanogaster/', 'title': 'Su(var)2-10 (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '2ea776a5-7bc9-45cd-8a18-a59fd524fbb8', 'status': 'released'} dm3 2R 4995787 5018216 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF850ASN/, /files/ENCFF479RCH/ 1046774303 Kevin White, UChicago 1ee842135de556dc193567a923e2de25 https://www.encodeproject.org/files/ENCFF529PWR/@@download/ENCFF529PWR.bam released s3://encode-public/2016/12/23/7f89b4ce-a553-4104-b65e-9f5cbfa10735/ENCFF529PWR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF117DCN bigWig bigWig read-depth normalized signal dm6 ENCSR757RQP Control ChIP-seq /fly-donors/ENCDO179KXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35927/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-10-dmelanogaster', 'label': 'Su(var)2-10', '@id': '/targets/Su(var)2-10-dmelanogaster/', 'title': 'Su(var)2-10 (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '2ea776a5-7bc9-45cd-8a18-a59fd524fbb8', 'status': 'released'} dm3 2R 4995787 5018216 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF529PWR/ 17533670 Kevin White, UChicago 4911be45f0533074db1093158f25a947 https://www.encodeproject.org/files/ENCFF117DCN/@@download/ENCFF117DCN.bigWig released s3://encode-public/2017/01/04/20c10388-fca3-4beb-b2f0-63be264fbdfc/ENCFF117DCN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF467WJD bigWig bigWig signal of unique reads dm3 ENCSR757RQP Control ChIP-seq /fly-donors/ENCDO179KXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35927/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-10-dmelanogaster', 'label': 'Su(var)2-10', '@id': '/targets/Su(var)2-10-dmelanogaster/', 'title': 'Su(var)2-10 (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '2ea776a5-7bc9-45cd-8a18-a59fd524fbb8', 'status': 'released'} dm3 2R 4995787 5018216 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF195FPW/ 15417525 Kevin White, UChicago 2dfa147f1070384dd45208040e9a8f51 https://www.encodeproject.org/files/ENCFF467WJD/@@download/ENCFF467WJD.bigWig released s3://encode-public/2017/01/04/563cfc38-ad3f-4357-a280-3cf1927f67e1/ENCFF467WJD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF826ZMV bigWig bigWig read-depth normalized signal dm3 ENCSR757RQP Control ChIP-seq /fly-donors/ENCDO179KXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35927/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-10-dmelanogaster', 'label': 'Su(var)2-10', '@id': '/targets/Su(var)2-10-dmelanogaster/', 'title': 'Su(var)2-10 (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '2ea776a5-7bc9-45cd-8a18-a59fd524fbb8', 'status': 'released'} dm3 2R 4995787 5018216 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF195FPW/ 15423479 Kevin White, UChicago 2641be319d8d16f48a8f83f10e9a4c98 https://www.encodeproject.org/files/ENCFF826ZMV/@@download/ENCFF826ZMV.bigWig released s3://encode-public/2017/01/04/7068b9f3-7f72-4b78-bcf5-b95d8e4d3594/ENCFF826ZMV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF770NDI bigWig bigWig signal of unique reads dm6 ENCSR757RQP Control ChIP-seq /fly-donors/ENCDO179KXK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35927/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-10-dmelanogaster', 'label': 'Su(var)2-10', '@id': '/targets/Su(var)2-10-dmelanogaster/', 'title': 'Su(var)2-10 (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': '2ea776a5-7bc9-45cd-8a18-a59fd524fbb8', 'status': 'released'} dm3 2R 4995787 5018216 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF529PWR/ 17532450 Kevin White, UChicago a79df5da93d3e6cecdd975e2dc6408bb https://www.encodeproject.org/files/ENCFF770NDI/@@download/ENCFF770NDI.bigWig released s3://encode-public/2017/01/04/1dc0970c-b981-4d94-a5d7-ea63d2692d8e/ENCFF770NDI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF347CVL fastq fastq reads ENCSR163RIQ Control ChIP-seq /fly-donors/ENCDO036OWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38817/'], '@type': ['Target', 'Item'], 'name': 'CTCF-dmelanogaster', 'label': 'CTCF', '@id': '/targets/CTCF-dmelanogaster/', 'title': 'CTCF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '367ce7b9-768b-4a3a-8424-39f78336d05f', 'status': 'released'} dm3 3L 7345433 7363463 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 889075737 Kevin White, UChicago 2e77469977b6e5ec1a7ca168b49e959a https://www.encodeproject.org/files/ENCFF347CVL/@@download/ENCFF347CVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/1416b7aa-faf6-4d6f-a945-cd16374ca27a/ENCFF347CVL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF631WTG bam bam alignments dm3 ENCSR163RIQ Control ChIP-seq /fly-donors/ENCDO036OWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38817/'], '@type': ['Target', 'Item'], 'name': 'CTCF-dmelanogaster', 'label': 'CTCF', '@id': '/targets/CTCF-dmelanogaster/', 'title': 'CTCF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '367ce7b9-768b-4a3a-8424-39f78336d05f', 'status': 'released'} dm3 3L 7345433 7363463 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF347CVL/, /files/ENCFF059UHX/ 1198126998 Kevin White, UChicago 28f6648b6cfab520e9d5c924f8111930 https://www.encodeproject.org/files/ENCFF631WTG/@@download/ENCFF631WTG.bam released s3://encode-public/2016/12/22/7afd6ac0-1c2c-4eec-953e-68e2bbf5a774/ENCFF631WTG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF527UNH bam bam alignments dm6 ENCSR163RIQ Control ChIP-seq /fly-donors/ENCDO036OWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38817/'], '@type': ['Target', 'Item'], 'name': 'CTCF-dmelanogaster', 'label': 'CTCF', '@id': '/targets/CTCF-dmelanogaster/', 'title': 'CTCF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '367ce7b9-768b-4a3a-8424-39f78336d05f', 'status': 'released'} dm3 3L 7345433 7363463 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF347CVL/, /files/ENCFF479RCH/ 1186621711 Kevin White, UChicago 0dfa64d1a7d8f13aae08a193cb9674f1 https://www.encodeproject.org/files/ENCFF527UNH/@@download/ENCFF527UNH.bam released s3://encode-public/2016/12/22/bd547a2b-775f-4c24-8dd5-073f13f3bb11/ENCFF527UNH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF669JHC bigWig bigWig read-depth normalized signal dm3 ENCSR163RIQ Control ChIP-seq /fly-donors/ENCDO036OWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38817/'], '@type': ['Target', 'Item'], 'name': 'CTCF-dmelanogaster', 'label': 'CTCF', '@id': '/targets/CTCF-dmelanogaster/', 'title': 'CTCF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '367ce7b9-768b-4a3a-8424-39f78336d05f', 'status': 'released'} dm3 3L 7345433 7363463 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF631WTG/ 15394854 Kevin White, UChicago 1e94e9019aed176ca7bf3779e5601a51 https://www.encodeproject.org/files/ENCFF669JHC/@@download/ENCFF669JHC.bigWig released s3://encode-public/2017/01/03/4138a5a1-f611-4fd9-b37e-5a8158c7ea14/ENCFF669JHC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF564KVB bigWig bigWig signal of unique reads dm3 ENCSR163RIQ Control ChIP-seq /fly-donors/ENCDO036OWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38817/'], '@type': ['Target', 'Item'], 'name': 'CTCF-dmelanogaster', 'label': 'CTCF', '@id': '/targets/CTCF-dmelanogaster/', 'title': 'CTCF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '367ce7b9-768b-4a3a-8424-39f78336d05f', 'status': 'released'} dm3 3L 7345433 7363463 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF631WTG/ 15354446 Kevin White, UChicago e08b66e467baac6e609006b945afbbfd https://www.encodeproject.org/files/ENCFF564KVB/@@download/ENCFF564KVB.bigWig released s3://encode-public/2017/01/03/993c644b-59be-4816-9b0a-a0de8ef01031/ENCFF564KVB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF770ARH bigWig bigWig read-depth normalized signal dm6 ENCSR163RIQ Control ChIP-seq /fly-donors/ENCDO036OWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38817/'], '@type': ['Target', 'Item'], 'name': 'CTCF-dmelanogaster', 'label': 'CTCF', '@id': '/targets/CTCF-dmelanogaster/', 'title': 'CTCF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '367ce7b9-768b-4a3a-8424-39f78336d05f', 'status': 'released'} dm3 3L 7345433 7363463 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF527UNH/ 17490324 Kevin White, UChicago ad77f546f35a1e6dd403daf1deae0e3b https://www.encodeproject.org/files/ENCFF770ARH/@@download/ENCFF770ARH.bigWig released s3://encode-public/2017/01/04/d1353322-d0b8-473d-ae4d-c6c361bcfa2d/ENCFF770ARH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF439EPR bigWig bigWig signal of unique reads dm6 ENCSR163RIQ Control ChIP-seq /fly-donors/ENCDO036OWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38817/'], '@type': ['Target', 'Item'], 'name': 'CTCF-dmelanogaster', 'label': 'CTCF', '@id': '/targets/CTCF-dmelanogaster/', 'title': 'CTCF (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '367ce7b9-768b-4a3a-8424-39f78336d05f', 'status': 'released'} dm3 3L 7345433 7363463 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF527UNH/ 17436056 Kevin White, UChicago ab11915cc83d3140b8362cdc1eb28d01 https://www.encodeproject.org/files/ENCFF439EPR/@@download/ENCFF439EPR.bigWig released s3://encode-public/2017/01/04/89b86123-2be5-4c20-bbd3-f9078553db2e/ENCFF439EPR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF955AVW fastq fastq reads ENCSR850KFE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1304'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27254/'], '@type': ['Target', 'Item'], 'name': 'CSDC2-human', 'label': 'CSDC2', '@id': '/targets/CSDC2-human/', 'title': 'CSDC2 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': 'e1e16d03-c1f0-4e9d-9f1a-c8b00f613cb7', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF497FZK/ 2583550110 Michael Snyder, Stanford 228cbed450fde424dae32a593fcf7204 https://www.encodeproject.org/files/ENCFF955AVW/@@download/ENCFF955AVW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/1a03cb22-1895-45cd-b805-5545a008825b/ENCFF955AVW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF497FZK fastq fastq reads ENCSR850KFE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1304'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27254/'], '@type': ['Target', 'Item'], 'name': 'CSDC2-human', 'label': 'CSDC2', '@id': '/targets/CSDC2-human/', 'title': 'CSDC2 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': 'e1e16d03-c1f0-4e9d-9f1a-c8b00f613cb7', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF955AVW/ 2422473027 Michael Snyder, Stanford 5fa27d3bdce1bba3fdad710da9f134e0 https://www.encodeproject.org/files/ENCFF497FZK/@@download/ENCFF497FZK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/8dcece9b-96e1-4538-b430-75075dca6363/ENCFF497FZK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF991HLN bam bam unfiltered alignments GRCh38 ENCSR850KFE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1304'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27254/'], '@type': ['Target', 'Item'], 'name': 'CSDC2-human', 'label': 'CSDC2', '@id': '/targets/CSDC2-human/', 'title': 'CSDC2 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': 'e1e16d03-c1f0-4e9d-9f1a-c8b00f613cb7', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF497FZK/, /files/ENCFF955AVW/ 4535453237 ENCODE Processing Pipeline a035956e56d5ee1e3c54e852585750d6 https://www.encodeproject.org/files/ENCFF991HLN/@@download/ENCFF991HLN.bam released s3://encode-public/2020/04/21/0c056d50-bb1c-4a2d-920c-b4d1a0bce599/ENCFF991HLN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF933HDD bam bam alignments GRCh38 ENCSR850KFE Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1304'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27254/'], '@type': ['Target', 'Item'], 'name': 'CSDC2-human', 'label': 'CSDC2', '@id': '/targets/CSDC2-human/', 'title': 'CSDC2 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': 'e1e16d03-c1f0-4e9d-9f1a-c8b00f613cb7', 'status': 'released'} DNA 2022-01-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF497FZK/, /files/ENCFF955AVW/ 3330711801 ENCODE Processing Pipeline 5e6d8be150efca3a9506c62965115152 https://www.encodeproject.org/files/ENCFF933HDD/@@download/ENCFF933HDD.bam released s3://encode-public/2020/04/21/b5aa606e-2a25-4f0a-9386-1fdfa0ceda3b/ENCFF933HDD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF406LEN fastq fastq reads ENCSR422KZB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1660'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7021/'], '@type': ['Target', 'Item'], 'name': 'TFAP2B-human', 'label': 'TFAP2B', '@id': '/targets/TFAP2B-human/', 'title': 'TFAP2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abdd6ab3-a4f4-4273-a6db-bb7bdc9c2bd6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF945QEI/ 2221378398 Michael Snyder, Stanford 0fc9be1907fe62dc7f9d0654afa1ee88 SRA:SRR14832715 https://www.encodeproject.org/files/ENCFF406LEN/@@download/ENCFF406LEN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/f5459971-309a-48b7-b796-7086d5306ae1/ENCFF406LEN.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF945QEI fastq fastq reads ENCSR422KZB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1660'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7021/'], '@type': ['Target', 'Item'], 'name': 'TFAP2B-human', 'label': 'TFAP2B', '@id': '/targets/TFAP2B-human/', 'title': 'TFAP2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abdd6ab3-a4f4-4273-a6db-bb7bdc9c2bd6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF406LEN/ 2348332635 Michael Snyder, Stanford 603e5a3868058fcde2f8e85f67164b73 SRA:SRR14832715 https://www.encodeproject.org/files/ENCFF945QEI/@@download/ENCFF945QEI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/5533e3cf-2dc8-4835-9511-8701429504cc/ENCFF945QEI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF083BOY bam bam unfiltered alignments GRCh38 ENCSR422KZB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1660'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7021/'], '@type': ['Target', 'Item'], 'name': 'TFAP2B-human', 'label': 'TFAP2B', '@id': '/targets/TFAP2B-human/', 'title': 'TFAP2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abdd6ab3-a4f4-4273-a6db-bb7bdc9c2bd6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF406LEN/, /files/ENCFF945QEI/ 4352178668 ENCODE Processing Pipeline 4ae3115c116f1993e40c53f16913ed82 https://www.encodeproject.org/files/ENCFF083BOY/@@download/ENCFF083BOY.bam released s3://encode-public/2020/04/20/32be7899-8020-41c9-a121-8f64ea128947/ENCFF083BOY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF608TXC bam bam alignments GRCh38 ENCSR422KZB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1660'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7021/'], '@type': ['Target', 'Item'], 'name': 'TFAP2B-human', 'label': 'TFAP2B', '@id': '/targets/TFAP2B-human/', 'title': 'TFAP2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abdd6ab3-a4f4-4273-a6db-bb7bdc9c2bd6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF406LEN/, /files/ENCFF945QEI/ 3216809006 ENCODE Processing Pipeline 00de9e80581464c7d24ae37dc23b4068 https://www.encodeproject.org/files/ENCFF608TXC/@@download/ENCFF608TXC.bam released s3://encode-public/2020/04/20/77f56b5e-713c-4d00-b073-2b61f4328d4d/ENCFF608TXC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF933OGD fastq fastq reads ENCSR957URO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF753RWZ/ 2503406703 Michael Snyder, Stanford cfaedb8c75a1282a994648ee3a4255c8 SRA:SRR14107401 https://www.encodeproject.org/files/ENCFF933OGD/@@download/ENCFF933OGD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/3f17fac5-3860-4a12-b687-49ad983f6171/ENCFF933OGD.fastq.gz mild to moderate bottlenecking ENCFF753RWZ fastq fastq reads ENCSR957URO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF933OGD/ 2736311615 Michael Snyder, Stanford 5dbc362a2fcb87a63aa988bac014256f SRA:SRR14107401 https://www.encodeproject.org/files/ENCFF753RWZ/@@download/ENCFF753RWZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/13c1846b-7573-477d-ac33-e9971cb548a4/ENCFF753RWZ.fastq.gz mild to moderate bottlenecking ENCFF583ONA bam bam unfiltered alignments GRCh38 ENCSR957URO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF933OGD/, /files/ENCFF753RWZ/ 4972240353 ENCODE Processing Pipeline 46937a3c0cacabb8878b58958014a307 https://www.encodeproject.org/files/ENCFF583ONA/@@download/ENCFF583ONA.bam released s3://encode-public/2020/04/20/75c7f5e1-2b51-4df6-a4b1-e1cdf3cdceb4/ENCFF583ONA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF234FTK bam bam alignments GRCh38 ENCSR957URO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1194'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55900/'], '@type': ['Target', 'Item'], 'name': 'ZNF302-human', 'label': 'ZNF302', '@id': '/targets/ZNF302-human/', 'title': 'ZNF302 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '10025501-1498-45ab-829f-397e098b97aa', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF933OGD/, /files/ENCFF753RWZ/ 3859902876 ENCODE Processing Pipeline 11721af957a1134759a2e8a910072d2d https://www.encodeproject.org/files/ENCFF234FTK/@@download/ENCFF234FTK.bam released s3://encode-public/2020/04/20/e21d8cf9-193e-4da5-b8ba-38c734d3bb5d/ENCFF234FTK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF654AVJ fastq fastq reads ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF241WBG/ 2390711639 Richard Myers, HAIB 6ad9d1e70bb10717337d84f12911610e SRA:SRR6213626 https://www.encodeproject.org/files/ENCFF654AVJ/@@download/ENCFF654AVJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/c24c2ca7-e05d-4ce7-aff2-37e7c55f7e08/ENCFF654AVJ.fastq.gz ENCFF241WBG fastq fastq reads ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF654AVJ/ 2479802445 Richard Myers, HAIB 8054034e8544a6049ee529317b4ac2da SRA:SRR6213626 https://www.encodeproject.org/files/ENCFF241WBG/@@download/ENCFF241WBG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/4491ec6f-99f3-4105-bd8d-ff31e40229fd/ENCFF241WBG.fastq.gz ENCFF777BUJ bam bam unfiltered alignments hg19 ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF241WBG/, /files/ENCFF654AVJ/ 5822940196 ENCODE Processing Pipeline 4119be96b8c1ec048423fd9cd0b595a1 https://www.encodeproject.org/files/ENCFF777BUJ/@@download/ENCFF777BUJ.bam released s3://encode-public/2017/02/02/c355013e-7dcf-4562-9e0d-146396b8bb82/ENCFF777BUJ.bam ENCODE3 hg19 archived ENCFF494BMV bam bam alignments hg19 ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF241WBG/, /files/ENCFF654AVJ/ 4357796423 ENCODE Processing Pipeline 3f37784e9d69097eabfd9af3dcab1efe https://www.encodeproject.org/files/ENCFF494BMV/@@download/ENCFF494BMV.bam released s3://encode-public/2017/02/02/505ebf61-003a-48b4-bed9-538357d153a2/ENCFF494BMV.bam ENCODE3 hg19 archived ENCFF311NUX bam bam unfiltered alignments GRCh38 ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF241WBG/, /files/ENCFF654AVJ/ 5846452481 ENCODE Processing Pipeline a90ed13df425ed51efc16029094235e9 https://www.encodeproject.org/files/ENCFF311NUX/@@download/ENCFF311NUX.bam released s3://encode-public/2017/02/02/7cadec01-d6f7-4882-9be4-28247744ed51/ENCFF311NUX.bam ENCODE3 GRCh38 archived ENCFF977FWU bam bam alignments GRCh38 ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF241WBG/, /files/ENCFF654AVJ/ 4362756664 ENCODE Processing Pipeline 9a019b1c4896939efbdc1639f3c6082a https://www.encodeproject.org/files/ENCFF977FWU/@@download/ENCFF977FWU.bam released s3://encode-public/2017/02/02/ef536ac1-ec9c-48ca-92ab-18f99f125de7/ENCFF977FWU.bam ENCODE3 GRCh38 archived ENCFF703MHY bam bam alignments GRCh38 ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF241WBG/, /files/ENCFF654AVJ/, /files/ENCFF110MCL/ 4129359387 ENCODE Processing Pipeline 80fe7b3cd5dbe16f67cce8d75b95ca4d https://www.encodeproject.org/files/ENCFF703MHY/@@download/ENCFF703MHY.bam released s3://encode-public/2020/10/28/59747f9d-6231-4145-b6f8-f3e42c19a82e/ENCFF703MHY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF524NCI bam bam unfiltered alignments GRCh38 ENCSR538IHE Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF241WBG/, /files/ENCFF654AVJ/, /files/ENCFF110MCL/ 5820890699 ENCODE Processing Pipeline 7aba839c698b484b1a5300d6da5f2c9f https://www.encodeproject.org/files/ENCFF524NCI/@@download/ENCFF524NCI.bam released s3://encode-public/2020/10/28/4fc3204f-929f-4439-a408-f9969bf9bdb3/ENCFF524NCI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF361ZCL fastq fastq reads ENCSR743HNM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 single-ended 2708572188 Richard Myers, HAIB bc24bff31e17c45833fb1f04e0f4726a SRA:SRR14103359 https://www.encodeproject.org/files/ENCFF361ZCL/@@download/ENCFF361ZCL.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/05/27/864ef2b7-2180-458a-8634-68e8cc241044/ENCFF361ZCL.fastq.gz ENCFF797JXS bam bam unfiltered alignments GRCh38 ENCSR743HNM Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF361ZCL/ 2449130033 ENCODE Processing Pipeline 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/files/ENCFF032ITD/ 5196394670 ENCODE Processing Pipeline caf94da3f87bd469ec5b59bc31d96ac9 https://www.encodeproject.org/files/ENCFF766ZDT/@@download/ENCFF766ZDT.bam released s3://encode-public/2016/12/10/76fa5b93-e3c6-4143-a05d-03756c8aaa2b/ENCFF766ZDT.bam ENCODE3 GRCh38 archived ENCFF700NXF bam bam alignments GRCh38 ENCSR144QLB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF459DWM/, /files/ENCFF643CGH/, /files/ENCFF032ITD/ 4347283062 ENCODE Processing Pipeline 46ac18cf28ede9cf78d6097c75aa3cf4 https://www.encodeproject.org/files/ENCFF700NXF/@@download/ENCFF700NXF.bam released s3://encode-public/2016/12/10/6ff6b185-014e-4e26-a82b-b50598167398/ENCFF700NXF.bam ENCODE3 GRCh38 archived ENCFF124ZKZ bam bam alignments GRCh38 ENCSR144QLB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF032ITD/, /files/ENCFF459DWM/ 4274731333 ENCODE Processing Pipeline a85349b1d32a2d568e00cd79f56184eb https://www.encodeproject.org/files/ENCFF124ZKZ/@@download/ENCFF124ZKZ.bam released s3://encode-public/2020/06/03/9e8dd2d3-da54-4fee-8fb7-8b04f36fbd7c/ENCFF124ZKZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF151KHR bam bam unfiltered alignments GRCh38 ENCSR144QLB Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF032ITD/, /files/ENCFF459DWM/ 5175187020 ENCODE Processing Pipeline 49f2a06f0697ef0671ff4ede046e249c https://www.encodeproject.org/files/ENCFF151KHR/@@download/ENCFF151KHR.bam released s3://encode-public/2020/06/03/6454ed40-1f3e-489f-8555-bcc5792c009e/ENCFF151KHR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF647UJY fastq fastq reads ENCSR197JBL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6591/'], '@type': ['Target', 'Item'], 'name': 'SNAI2-human', 'label': 'SNAI2', '@id': '/targets/SNAI2-human/', 'title': 'SNAI2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8ee7049e-80d5-4847-a6ea-bfb318f39b76', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF071MGF/ 2616408847 Michael Snyder, Stanford e61fbeb6e36539aba813ba0151fd0648 SRA:SRR14637432 https://www.encodeproject.org/files/ENCFF647UJY/@@download/ENCFF647UJY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/3f0ab1fb-7aad-4bf2-b068-65d2813c154f/ENCFF647UJY.fastq.gz mild to moderate bottlenecking ENCFF071MGF fastq fastq reads ENCSR197JBL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6591/'], '@type': ['Target', 'Item'], 'name': 'SNAI2-human', 'label': 'SNAI2', '@id': '/targets/SNAI2-human/', 'title': 'SNAI2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8ee7049e-80d5-4847-a6ea-bfb318f39b76', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF647UJY/ 2798554739 Michael Snyder, Stanford d3440097f162aca21a50c3312f8f35f7 SRA:SRR14637432 https://www.encodeproject.org/files/ENCFF071MGF/@@download/ENCFF071MGF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/07ce528c-b343-4a30-962c-9ca01c8f9191/ENCFF071MGF.fastq.gz mild to moderate bottlenecking ENCFF199CMK bam bam unfiltered alignments GRCh38 ENCSR197JBL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6591/'], '@type': ['Target', 'Item'], 'name': 'SNAI2-human', 'label': 'SNAI2', '@id': '/targets/SNAI2-human/', 'title': 'SNAI2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8ee7049e-80d5-4847-a6ea-bfb318f39b76', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF647UJY/, /files/ENCFF071MGF/ 5286026362 ENCODE Processing Pipeline 79d671a7ec39a741a35f5ab75b75ce2f https://www.encodeproject.org/files/ENCFF199CMK/@@download/ENCFF199CMK.bam released s3://encode-public/2020/04/21/53c40f08-b8a1-4bb8-8d57-09e325568b5f/ENCFF199CMK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF750HNQ bam bam alignments GRCh38 ENCSR197JBL Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6591/'], '@type': ['Target', 'Item'], 'name': 'SNAI2-human', 'label': 'SNAI2', '@id': '/targets/SNAI2-human/', 'title': 'SNAI2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8ee7049e-80d5-4847-a6ea-bfb318f39b76', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF647UJY/, /files/ENCFF071MGF/ 4222217735 ENCODE Processing Pipeline d57ef1f0883e7cfefa16e031f9727c5e https://www.encodeproject.org/files/ENCFF750HNQ/@@download/ENCFF750HNQ.bam released s3://encode-public/2020/04/21/5034a56b-8115-42ba-b334-694627817ba3/ENCFF750HNQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF512MIH fastq fastq reads ENCSR119OOH Control ChIP-seq /fly-donors/ENCDO004JZJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} dm3 2R 6341550 6449443 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1828163224 Kevin White, UChicago 3bcb1b2bcacdcf079c6fb99e15bb77b0 https://www.encodeproject.org/files/ENCFF512MIH/@@download/ENCFF512MIH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/1f2d8301-06a8-42c5-8f5f-8a87f860d307/ENCFF512MIH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF547BUP bam bam alignments dm6 ENCSR119OOH Control ChIP-seq /fly-donors/ENCDO004JZJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} dm3 2R 6341550 6449443 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF512MIH/, /files/ENCFF479RCH/ 2516026886 Kevin White, UChicago d25bf0f31cec0c6d6ab6ca4298b31df1 https://www.encodeproject.org/files/ENCFF547BUP/@@download/ENCFF547BUP.bam released s3://encode-public/2019/04/13/f970e0fd-1664-46ec-8936-d6865da8ddfe/ENCFF547BUP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF913EJR bigWig bigWig read-depth normalized signal dm6 ENCSR119OOH Control ChIP-seq /fly-donors/ENCDO004JZJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} dm3 2R 6341550 6449443 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547BUP/ 17909549 Kevin White, UChicago 812072f8401c0a2263e53cd5cbc7a796 https://www.encodeproject.org/files/ENCFF913EJR/@@download/ENCFF913EJR.bigWig released s3://encode-public/2019/04/16/35086556-ecb4-4ddb-ad3e-b54dd891b0a4/ENCFF913EJR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF915GZJ bigWig bigWig signal of unique reads dm6 ENCSR119OOH Control ChIP-seq /fly-donors/ENCDO004JZJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} dm3 2R 6341550 6449443 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF547BUP/ 17872529 Kevin White, UChicago fbc1d63081f730abeaff40f4474bb779 https://www.encodeproject.org/files/ENCFF915GZJ/@@download/ENCFF915GZJ.bigWig released s3://encode-public/2019/04/16/23432131-85fa-4b2c-a9d1-39e16ecad492/ENCFF915GZJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF299YUY fastq fastq reads ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF452ZZF/ 3572110186 Richard Myers, HAIB 1c6c16711adceb7859913f53e6bf47d7 SRA:SRR8659983 https://www.encodeproject.org/files/ENCFF299YUY/@@download/ENCFF299YUY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/51c0370a-16b0-4a9d-adaf-a6a03f6c72e4/ENCFF299YUY.fastq.gz ENCFF452ZZF fastq fastq reads ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF299YUY/ 3711521234 Richard Myers, HAIB 91a78ab47c2acdad7a9c7a1af9ff2cf2 SRA:SRR8659983 https://www.encodeproject.org/files/ENCFF452ZZF/@@download/ENCFF452ZZF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/3b4f5a95-0b07-43ec-ab40-1d6786445e70/ENCFF452ZZF.fastq.gz ENCFF496DGC bam bam alignments hg19 ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF299YUY/, /files/ENCFF452ZZF/, /files/ENCFF807MUK/ 6033913514 ENCODE Processing Pipeline 9058f7a00267d11e67db989647697554 https://www.encodeproject.org/files/ENCFF496DGC/@@download/ENCFF496DGC.bam released s3://encode-public/2017/02/02/71a9a87d-837e-4cdd-b722-e7e06edbb511/ENCFF496DGC.bam ENCODE3 hg19 archived ENCFF207NOU bam bam unfiltered alignments hg19 ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF299YUY/, /files/ENCFF452ZZF/, /files/ENCFF807MUK/ 8456892602 ENCODE Processing Pipeline 5081027787b1235060f56b32a4b4d52e https://www.encodeproject.org/files/ENCFF207NOU/@@download/ENCFF207NOU.bam released s3://encode-public/2017/02/02/e88f4ce1-1a12-48c4-8bac-54d43e2a0c54/ENCFF207NOU.bam ENCODE3 hg19 archived ENCFF272RAI bam bam unfiltered alignments GRCh38 ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF299YUY/, /files/ENCFF452ZZF/, /files/ENCFF643CGH/ 8490086035 ENCODE Processing Pipeline d7db327b2145f5978f7046bbf8018cff https://www.encodeproject.org/files/ENCFF272RAI/@@download/ENCFF272RAI.bam released s3://encode-public/2017/02/02/6f59f060-0c14-4072-9d8c-b6b379873d72/ENCFF272RAI.bam ENCODE3 GRCh38 archived ENCFF700NLK bam bam alignments GRCh38 ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF299YUY/, /files/ENCFF452ZZF/, /files/ENCFF643CGH/ 6041399270 ENCODE Processing Pipeline 8e54e48768f0ac2408b60ee3ec7dbaed https://www.encodeproject.org/files/ENCFF700NLK/@@download/ENCFF700NLK.bam released s3://encode-public/2017/02/02/b26588dd-f304-4ee4-85c5-d2a038ae9f5f/ENCFF700NLK.bam ENCODE3 GRCh38 archived ENCFF750HCE bam bam unfiltered alignments GRCh38 ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF299YUY/, /files/ENCFF452ZZF/ 8533440516 ENCODE Processing Pipeline 981601e5f448b0ac42448871d0184c0e https://www.encodeproject.org/files/ENCFF750HCE/@@download/ENCFF750HCE.bam released s3://encode-public/2020/06/06/71e4fa2e-b06c-446d-9aa2-c9e9f59d568e/ENCFF750HCE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF176XHD bam bam alignments GRCh38 ENCSR032SLG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF299YUY/, /files/ENCFF452ZZF/ 5708088485 ENCODE Processing Pipeline 34936e4dde08e0cb63347cfd1859a811 https://www.encodeproject.org/files/ENCFF176XHD/@@download/ENCFF176XHD.bam released s3://encode-public/2020/06/06/9a0d9275-21b5-4f7e-a10d-e7e02d34eee2/ENCFF176XHD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF508LJJ fastq fastq reads ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF040RNV/ 2411885063 Michael Snyder, Stanford d98e6262904fc54943903cf6b4c444b1 SRA:SRR6213902 https://www.encodeproject.org/files/ENCFF508LJJ/@@download/ENCFF508LJJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/9b0a5d15-7dcf-46ef-9a24-295c611516c2/ENCFF508LJJ.fastq.gz ENCFF040RNV fastq fastq reads ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF508LJJ/ 2601248620 Michael Snyder, Stanford f599f0dfaa7325e5d63f69247e0f40a9 SRA:SRR6213902 https://www.encodeproject.org/files/ENCFF040RNV/@@download/ENCFF040RNV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/facb0c20-4a94-45e6-9f1f-43ae31f66aee/ENCFF040RNV.fastq.gz ENCFF725NAK bam bam unfiltered alignments GRCh38 ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF508LJJ/, /files/ENCFF040RNV/ 5045124181 ENCODE Processing Pipeline 26979cd67d83d0e035fb643b3b0005e0 https://www.encodeproject.org/files/ENCFF725NAK/@@download/ENCFF725NAK.bam released s3://encode-public/2017/01/27/5cef1d35-1394-4202-b083-51a44688b044/ENCFF725NAK.bam ENCODE3 GRCh38 archived ENCFF217IBH bam bam alignments GRCh38 ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF508LJJ/, /files/ENCFF040RNV/ 4064087502 ENCODE Processing Pipeline 0fe4212b9e77ab66e80a8611bcf27a5b https://www.encodeproject.org/files/ENCFF217IBH/@@download/ENCFF217IBH.bam released s3://encode-public/2017/01/27/ed74f036-a9dc-41f4-ba6b-8606b049ec97/ENCFF217IBH.bam ENCODE3 GRCh38 archived ENCFF485FAG bam bam unfiltered alignments hg19 ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF508LJJ/, /files/ENCFF040RNV/ 5031516401 ENCODE Processing Pipeline a893e19a5a1643edd34833b0aa43241b https://www.encodeproject.org/files/ENCFF485FAG/@@download/ENCFF485FAG.bam released s3://encode-public/2017/01/28/55f1f38e-5d88-4969-ad7f-0b3ac67986c1/ENCFF485FAG.bam ENCODE3 hg19 archived ENCFF049CMN bam bam alignments hg19 ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF508LJJ/, /files/ENCFF040RNV/ 4057761758 ENCODE Processing Pipeline 4f4fbfc6f5f6cab59f1c44f4f6fcc8be https://www.encodeproject.org/files/ENCFF049CMN/@@download/ENCFF049CMN.bam released s3://encode-public/2017/01/28/526c365b-cb65-4056-b916-98c57a6c35fa/ENCFF049CMN.bam ENCODE3 hg19 archived ENCFF099XWC bam bam unfiltered alignments GRCh38 ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF508LJJ/, /files/ENCFF040RNV/ 5072913908 ENCODE Processing Pipeline a832e33e72b2bbfadef376319607aac9 https://www.encodeproject.org/files/ENCFF099XWC/@@download/ENCFF099XWC.bam released s3://encode-public/2020/06/02/3028641a-c127-43c4-a693-9d7a304a1cd4/ENCFF099XWC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF763OFL bam bam alignments GRCh38 ENCSR584RZY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF508LJJ/, /files/ENCFF040RNV/ 3990301334 ENCODE Processing Pipeline 451bf34a94d883daf2a4efe840fa18b8 https://www.encodeproject.org/files/ENCFF763OFL/@@download/ENCFF763OFL.bam released s3://encode-public/2020/06/02/0c37cca7-14ec-40da-8be7-f630a65fc1c7/ENCFF763OFL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF450GUD bam bam alignments ce11 ENCSR124ARF Control ChIP-seq /worm-donors/ENCDO665WPT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191617/'], '@type': ['Target', 'Item'], 'name': 'ceh-8-celegans', 'label': 'ceh-8', '@id': '/targets/ceh-8-celegans/', 'title': 'ceh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9245cc7d-1d80-4676-afca-56f99bd3c44c', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF024ZYR/, /files/ENCFF586MOL/ 454145167 Kevin White, UChicago e558331574d7c9abd6a0633c8c67b32c https://www.encodeproject.org/files/ENCFF450GUD/@@download/ENCFF450GUD.bam released s3://encode-public/2018/09/17/d91e4a9f-4d3d-4596-8de3-195475dc54b2/ENCFF450GUD.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF024ZYR fastq fastq reads ENCSR124ARF Control ChIP-seq /worm-donors/ENCDO665WPT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191617/'], '@type': ['Target', 'Item'], 'name': 'ceh-8-celegans', 'label': 'ceh-8', '@id': '/targets/ceh-8-celegans/', 'title': 'ceh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9245cc7d-1d80-4676-afca-56f99bd3c44c', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 364343279 Kevin White, UChicago 4f8c45c86f862f0853c96e1e0f8669aa https://www.encodeproject.org/files/ENCFF024ZYR/@@download/ENCFF024ZYR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/747c54bf-e0c8-40db-9a1d-0e30863f5c03/ENCFF024ZYR.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF686VLP bigWig bigWig read-depth normalized signal ce11 ENCSR124ARF Control ChIP-seq /worm-donors/ENCDO665WPT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191617/'], '@type': ['Target', 'Item'], 'name': 'ceh-8-celegans', 'label': 'ceh-8', '@id': '/targets/ceh-8-celegans/', 'title': 'ceh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9245cc7d-1d80-4676-afca-56f99bd3c44c', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF450GUD/ 10039531 Kevin White, UChicago ac36d9391d6b6965d1f9413bbc560dee https://www.encodeproject.org/files/ENCFF686VLP/@@download/ENCFF686VLP.bigWig released s3://encode-public/2018/09/18/10522249-9f2a-45cf-8d37-40b1a674f5fa/ENCFF686VLP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF525LUW bigWig bigWig signal of unique reads ce11 ENCSR124ARF Control ChIP-seq /worm-donors/ENCDO665WPT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191617/'], '@type': ['Target', 'Item'], 'name': 'ceh-8-celegans', 'label': 'ceh-8', '@id': '/targets/ceh-8-celegans/', 'title': 'ceh-8 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '9245cc7d-1d80-4676-afca-56f99bd3c44c', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF450GUD/ 10017687 Kevin White, UChicago 57a90770f0a8ec936788cb13d891616a https://www.encodeproject.org/files/ENCFF525LUW/@@download/ENCFF525LUW.bigWig released s3://encode-public/2018/09/18/c6719dfa-5e6e-4a06-83f0-7870854c7716/ENCFF525LUW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF535DOQ fastq fastq reads ENCSR022ZVU Control ChIP-seq /fly-donors/ENCDO734JIG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768661/'], '@type': ['Target', 'Item'], 'name': 'Fer1-dmelanogaster', 'label': 'Fer1', '@id': '/targets/Fer1-dmelanogaster/', 'title': 'Fer1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7094a6ba-6328-4441-844e-bfa90979fcbf', 'status': 'released'} dm3 3R 2953635 2973725 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2057312592 Kevin White, UChicago 67777c2d8d138bd7a2cd7d05e5f6a1af https://www.encodeproject.org/files/ENCFF535DOQ/@@download/ENCFF535DOQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/6e40ec46-9d1c-4c27-b408-9105a2455996/ENCFF535DOQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF817RTN bam bam alignments dm3 ENCSR022ZVU Control ChIP-seq /fly-donors/ENCDO734JIG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768661/'], '@type': ['Target', 'Item'], 'name': 'Fer1-dmelanogaster', 'label': 'Fer1', '@id': '/targets/Fer1-dmelanogaster/', 'title': 'Fer1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7094a6ba-6328-4441-844e-bfa90979fcbf', 'status': 'released'} dm3 3R 2953635 2973725 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF535DOQ/, /files/ENCFF059UHX/ 2736937968 Kevin White, UChicago 6a03fc1ec91317e987e6be95f4a4e731 https://www.encodeproject.org/files/ENCFF817RTN/@@download/ENCFF817RTN.bam released s3://encode-public/2016/12/22/c8624af2-3016-433c-800f-ad2975ee1c24/ENCFF817RTN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF319LDK bam bam alignments dm6 ENCSR022ZVU Control ChIP-seq /fly-donors/ENCDO734JIG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768661/'], '@type': ['Target', 'Item'], 'name': 'Fer1-dmelanogaster', 'label': 'Fer1', '@id': '/targets/Fer1-dmelanogaster/', 'title': 'Fer1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7094a6ba-6328-4441-844e-bfa90979fcbf', 'status': 'released'} dm3 3R 2953635 2973725 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF535DOQ/, /files/ENCFF479RCH/ 2719366651 Kevin White, UChicago e92a76191b67b945c260d2f76638bd7b https://www.encodeproject.org/files/ENCFF319LDK/@@download/ENCFF319LDK.bam released s3://encode-public/2016/12/22/9e8ae193-7913-4816-b5e1-bbde9f730213/ENCFF319LDK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF730DHI bigWig bigWig read-depth normalized signal dm3 ENCSR022ZVU Control ChIP-seq /fly-donors/ENCDO734JIG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768661/'], '@type': ['Target', 'Item'], 'name': 'Fer1-dmelanogaster', 'label': 'Fer1', '@id': '/targets/Fer1-dmelanogaster/', 'title': 'Fer1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7094a6ba-6328-4441-844e-bfa90979fcbf', 'status': 'released'} dm3 3R 2953635 2973725 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF817RTN/ 15749841 Kevin White, UChicago 6aeed0f7a8941c7f4b4656e7f4e99e90 https://www.encodeproject.org/files/ENCFF730DHI/@@download/ENCFF730DHI.bigWig released s3://encode-public/2017/01/03/70eb5f28-cf30-49de-b114-59519c82838f/ENCFF730DHI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF666PPD bigWig bigWig signal of unique reads dm3 ENCSR022ZVU Control ChIP-seq /fly-donors/ENCDO734JIG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768661/'], '@type': ['Target', 'Item'], 'name': 'Fer1-dmelanogaster', 'label': 'Fer1', '@id': '/targets/Fer1-dmelanogaster/', 'title': 'Fer1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7094a6ba-6328-4441-844e-bfa90979fcbf', 'status': 'released'} dm3 3R 2953635 2973725 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF817RTN/ 15675514 Kevin White, UChicago d6741b7b3aa4b378a98b6d3caa536611 https://www.encodeproject.org/files/ENCFF666PPD/@@download/ENCFF666PPD.bigWig released s3://encode-public/2017/01/03/a4fee63c-f569-4977-acbc-ab5dd081bcf5/ENCFF666PPD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF610IYJ bigWig bigWig read-depth normalized signal dm6 ENCSR022ZVU Control ChIP-seq /fly-donors/ENCDO734JIG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768661/'], '@type': ['Target', 'Item'], 'name': 'Fer1-dmelanogaster', 'label': 'Fer1', '@id': '/targets/Fer1-dmelanogaster/', 'title': 'Fer1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7094a6ba-6328-4441-844e-bfa90979fcbf', 'status': 'released'} dm3 3R 2953635 2973725 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF319LDK/ 17799042 Kevin White, UChicago bc2e051d25d0b9a22579b27dc37efe02 https://www.encodeproject.org/files/ENCFF610IYJ/@@download/ENCFF610IYJ.bigWig released s3://encode-public/2017/01/04/3196587a-6d3f-449c-a8ca-e85d23d9e05b/ENCFF610IYJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF361LEJ bigWig bigWig signal of unique reads dm6 ENCSR022ZVU Control ChIP-seq /fly-donors/ENCDO734JIG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/2768661/'], '@type': ['Target', 'Item'], 'name': 'Fer1-dmelanogaster', 'label': 'Fer1', '@id': '/targets/Fer1-dmelanogaster/', 'title': 'Fer1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '7094a6ba-6328-4441-844e-bfa90979fcbf', 'status': 'released'} dm3 3R 2953635 2973725 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF319LDK/ 17708628 Kevin White, UChicago 27be21f2c0595db260f08c008aa5969f https://www.encodeproject.org/files/ENCFF361LEJ/@@download/ENCFF361LEJ.bigWig released s3://encode-public/2017/01/04/0b9f3073-25a1-4f13-b3ba-9ded616d18b8/ENCFF361LEJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF556RXT fastq fastq reads ENCSR561OFJ Control ChIP-seq /fly-donors/ENCDO364PKQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32902/'], '@type': ['Target', 'Item'], 'name': 'CG7556-dmelanogaster', 'label': 'CG7556', '@id': '/targets/CG7556-dmelanogaster/', 'title': 'CG7556 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '32aaf202-a86c-4291-b31d-09265e861f98', 'status': 'released'} dm3 X 19060130 19079099 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2740436110 Kevin White, UChicago 2b49af8eddbdb8058accd9c26f84d011 https://www.encodeproject.org/files/ENCFF556RXT/@@download/ENCFF556RXT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/e435a612-0893-47d3-9dd2-e033e9f2a32a/ENCFF556RXT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF491ONQ bam bam alignments dm3 ENCSR561OFJ Control ChIP-seq /fly-donors/ENCDO364PKQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32902/'], '@type': ['Target', 'Item'], 'name': 'CG7556-dmelanogaster', 'label': 'CG7556', '@id': '/targets/CG7556-dmelanogaster/', 'title': 'CG7556 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '32aaf202-a86c-4291-b31d-09265e861f98', 'status': 'released'} dm3 X 19060130 19079099 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF556RXT/, /files/ENCFF059UHX/ 3819114462 Kevin White, UChicago f39083f863572cb73875ab3e08aa0e92 https://www.encodeproject.org/files/ENCFF491ONQ/@@download/ENCFF491ONQ.bam released s3://encode-public/2016/12/23/c5bcfb62-4011-4434-ae19-3ae5d8a16314/ENCFF491ONQ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF016SGJ bam bam alignments dm6 ENCSR561OFJ Control ChIP-seq /fly-donors/ENCDO364PKQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32902/'], '@type': ['Target', 'Item'], 'name': 'CG7556-dmelanogaster', 'label': 'CG7556', '@id': '/targets/CG7556-dmelanogaster/', 'title': 'CG7556 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '32aaf202-a86c-4291-b31d-09265e861f98', 'status': 'released'} dm3 X 19060130 19079099 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF556RXT/, /files/ENCFF479RCH/ 3794060345 Kevin White, UChicago b573dfda22213555c299db4362573d9c https://www.encodeproject.org/files/ENCFF016SGJ/@@download/ENCFF016SGJ.bam released s3://encode-public/2016/12/23/a38c8bda-16a1-4d74-a9dc-9d4f313c8843/ENCFF016SGJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF145ZJW bigWig bigWig signal of unique reads dm3 ENCSR561OFJ Control ChIP-seq /fly-donors/ENCDO364PKQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32902/'], '@type': ['Target', 'Item'], 'name': 'CG7556-dmelanogaster', 'label': 'CG7556', '@id': '/targets/CG7556-dmelanogaster/', 'title': 'CG7556 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '32aaf202-a86c-4291-b31d-09265e861f98', 'status': 'released'} dm3 X 19060130 19079099 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF491ONQ/ 15773614 Kevin White, UChicago ad019cb50668f04675fd69710d980136 https://www.encodeproject.org/files/ENCFF145ZJW/@@download/ENCFF145ZJW.bigWig released s3://encode-public/2017/01/03/8e79d87a-6d3d-4b89-bd89-41f8a5a2f3bf/ENCFF145ZJW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF687NQU bigWig bigWig read-depth normalized signal dm3 ENCSR561OFJ Control ChIP-seq /fly-donors/ENCDO364PKQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32902/'], '@type': ['Target', 'Item'], 'name': 'CG7556-dmelanogaster', 'label': 'CG7556', '@id': '/targets/CG7556-dmelanogaster/', 'title': 'CG7556 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '32aaf202-a86c-4291-b31d-09265e861f98', 'status': 'released'} dm3 X 19060130 19079099 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF491ONQ/ 15780061 Kevin White, UChicago e4ef67dd8c20a69ae297f4842f485d17 https://www.encodeproject.org/files/ENCFF687NQU/@@download/ENCFF687NQU.bigWig released s3://encode-public/2017/01/03/89237296-b0f7-4878-ad92-9aa396fcd0c5/ENCFF687NQU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF283DIA bigWig bigWig read-depth normalized signal dm6 ENCSR561OFJ Control ChIP-seq /fly-donors/ENCDO364PKQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32902/'], '@type': ['Target', 'Item'], 'name': 'CG7556-dmelanogaster', 'label': 'CG7556', '@id': '/targets/CG7556-dmelanogaster/', 'title': 'CG7556 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '32aaf202-a86c-4291-b31d-09265e861f98', 'status': 'released'} dm3 X 19060130 19079099 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF016SGJ/ 17753329 Kevin White, UChicago 62ebf1083bfef5d9fdfd66aef9923287 https://www.encodeproject.org/files/ENCFF283DIA/@@download/ENCFF283DIA.bigWig released s3://encode-public/2017/01/04/bde530be-80ba-47e8-86d1-e47cda75ee0c/ENCFF283DIA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF831ZNT bigWig bigWig signal of unique reads dm6 ENCSR561OFJ Control ChIP-seq /fly-donors/ENCDO364PKQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32902/'], '@type': ['Target', 'Item'], 'name': 'CG7556-dmelanogaster', 'label': 'CG7556', '@id': '/targets/CG7556-dmelanogaster/', 'title': 'CG7556 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '32aaf202-a86c-4291-b31d-09265e861f98', 'status': 'released'} dm3 X 19060130 19079099 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF016SGJ/ 17742509 Kevin White, UChicago be7ea57a8b8bb0bf17313d5494efa507 https://www.encodeproject.org/files/ENCFF831ZNT/@@download/ENCFF831ZNT.bigWig released s3://encode-public/2017/01/04/9a13ae3a-f06c-4925-9305-ae0f6b245076/ENCFF831ZNT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF993FKF fastq fastq reads ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF398FSP/ 3067978164 Michael Snyder, Stanford d7201706bda440ad58bf1b84c410111c SRA:SRR6213946 https://www.encodeproject.org/files/ENCFF993FKF/@@download/ENCFF993FKF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/ba4faffa-b942-4dde-89ef-02ab4add22fb/ENCFF993FKF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF398FSP fastq fastq reads ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF993FKF/ 2562966371 Michael Snyder, Stanford 729004a82f5411adecd40e62c479a9a4 SRA:SRR6213946 https://www.encodeproject.org/files/ENCFF398FSP/@@download/ENCFF398FSP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/1d364912-dddd-4279-9ea9-51e092fc149c/ENCFF398FSP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF239CDG bam bam unfiltered alignments hg19 ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF993FKF/, /files/ENCFF807MUK/, /files/ENCFF398FSP/ 5265616370 ENCODE Processing Pipeline 800c1e8bca4488239c651263b4f9d1a2 https://www.encodeproject.org/files/ENCFF239CDG/@@download/ENCFF239CDG.bam released s3://encode-public/2016/12/10/aa6c14fc-a1df-4379-aecd-7d982a35cb1c/ENCFF239CDG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF240WVD bam bam alignments hg19 ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF993FKF/, /files/ENCFF807MUK/, /files/ENCFF398FSP/ 3801511033 ENCODE Processing Pipeline d3680036f9a7c2f824c9a857daf303b2 https://www.encodeproject.org/files/ENCFF240WVD/@@download/ENCFF240WVD.bam released s3://encode-public/2016/12/10/b1f31779-abe4-4140-a6ff-77247a30ab6a/ENCFF240WVD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF072UMU bam bam unfiltered alignments GRCh38 ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF993FKF/, /files/ENCFF643CGH/, /files/ENCFF398FSP/ 5272799835 ENCODE Processing Pipeline b841a2ac3c73c0d4a0fd3df7a90cec86 https://www.encodeproject.org/files/ENCFF072UMU/@@download/ENCFF072UMU.bam released s3://encode-public/2016/12/10/7c627760-086d-4935-81cf-0111b54a82f9/ENCFF072UMU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF572VZL bam bam alignments GRCh38 ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF993FKF/, /files/ENCFF643CGH/, /files/ENCFF398FSP/ 3807774181 ENCODE Processing Pipeline 2727ed8f9a53d2cba0c8c920a9b45360 https://www.encodeproject.org/files/ENCFF572VZL/@@download/ENCFF572VZL.bam released s3://encode-public/2016/12/10/5ca88b39-164f-438c-bc4b-2cbc137e09c1/ENCFF572VZL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF082UYX bam bam unfiltered alignments GRCh38 ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF398FSP/, /files/ENCFF993FKF/ 5270589769 ENCODE Processing Pipeline 3859ef7d87f8e57b38014f812076d11a https://www.encodeproject.org/files/ENCFF082UYX/@@download/ENCFF082UYX.bam released s3://encode-public/2020/06/02/1b7f42cf-8be3-4baa-ab8e-82bfa66d72b7/ENCFF082UYX.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF235TMH bam bam alignments GRCh38 ENCSR710DTC Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF398FSP/, /files/ENCFF993FKF/ 3765030411 ENCODE Processing Pipeline a02349e8872747b6aa8be0038ebe5993 https://www.encodeproject.org/files/ENCFF235TMH/@@download/ENCFF235TMH.bam released s3://encode-public/2020/06/02/5173db1a-b867-4f67-a59f-4f10eb6c6e04/ENCFF235TMH.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF250VLU fastq fastq reads ENCSR485MYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-05-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF677KCJ/ 1899127057 Michael Snyder, Stanford 6e634deefbf7abdd584df5b8f28c85cd https://www.encodeproject.org/files/ENCFF250VLU/@@download/ENCFF250VLU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/13348dea-6c02-495d-9210-39cb4fd69590/ENCFF250VLU.fastq.gz ENCFF677KCJ fastq fastq reads ENCSR485MYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-05-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF250VLU/ 2202187937 Michael Snyder, Stanford bcc636635245d2d0dc4d47fd8fcd4fa4 https://www.encodeproject.org/files/ENCFF677KCJ/@@download/ENCFF677KCJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/b2245da1-7b10-4fce-96ff-71ec079adc57/ENCFF677KCJ.fastq.gz ENCFF421EJR bam bam unfiltered alignments GRCh38 ENCSR485MYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-05-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF250VLU/, /files/ENCFF677KCJ/ 4370366199 ENCODE Processing Pipeline ffc2ccf8447855a0b77c7071a65c3557 https://www.encodeproject.org/files/ENCFF421EJR/@@download/ENCFF421EJR.bam released s3://encode-public/2020/04/20/1f466bcf-9dfb-4f2d-998e-cbdeb67e3868/ENCFF421EJR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF100BVF bam bam alignments GRCh38 ENCSR485MYT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA 2022-05-05 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF250VLU/, /files/ENCFF677KCJ/ 3549215989 ENCODE Processing Pipeline 377146c06b8d7e0cea68509966518656 https://www.encodeproject.org/files/ENCFF100BVF/@@download/ENCFF100BVF.bam released s3://encode-public/2020/04/20/15d43209-b3be-424e-a198-b4db28d62b63/ENCFF100BVF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF035SYS fastq fastq reads ENCSR962PQM Control ChIP-seq /fly-donors/ENCDO752BTJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37730/'], '@type': ['Target', 'Item'], 'name': 'pita-dmelanogaster', 'label': 'pita', '@id': '/targets/pita-dmelanogaster/', 'title': 'pita (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f82424f9-ce30-417c-8cfc-5b5034455eb0', 'status': 'released'} dm3 2R 19428976 19448743 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 560636193 Kevin White, UChicago 9a915cb8a46687cbd88f79006238a23e https://www.encodeproject.org/files/ENCFF035SYS/@@download/ENCFF035SYS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/b7698efb-2c63-4038-a786-862c0394ae11/ENCFF035SYS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF695SDU bam bam alignments dm3 ENCSR962PQM Control ChIP-seq /fly-donors/ENCDO752BTJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37730/'], '@type': ['Target', 'Item'], 'name': 'pita-dmelanogaster', 'label': 'pita', '@id': '/targets/pita-dmelanogaster/', 'title': 'pita (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f82424f9-ce30-417c-8cfc-5b5034455eb0', 'status': 'released'} dm3 2R 19428976 19448743 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF035SYS/, /files/ENCFF059UHX/ 741869319 Kevin White, UChicago 76773c4dde2952c3380480bdf4728c33 https://www.encodeproject.org/files/ENCFF695SDU/@@download/ENCFF695SDU.bam released s3://encode-public/2016/12/23/70a3a072-6f5a-4263-894f-079f5989d158/ENCFF695SDU.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF368GJN bam bam alignments dm6 ENCSR962PQM Control ChIP-seq /fly-donors/ENCDO752BTJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37730/'], '@type': ['Target', 'Item'], 'name': 'pita-dmelanogaster', 'label': 'pita', '@id': '/targets/pita-dmelanogaster/', 'title': 'pita (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f82424f9-ce30-417c-8cfc-5b5034455eb0', 'status': 'released'} dm3 2R 19428976 19448743 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF035SYS/, /files/ENCFF479RCH/ 732804176 Kevin White, UChicago 9a8362724ca1becc70a1f7f7d80cd34f https://www.encodeproject.org/files/ENCFF368GJN/@@download/ENCFF368GJN.bam released s3://encode-public/2016/12/23/c8d53bd8-149d-4be2-be27-dee97108d710/ENCFF368GJN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF914SLW bigWig bigWig read-depth normalized signal dm3 ENCSR962PQM Control ChIP-seq /fly-donors/ENCDO752BTJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37730/'], '@type': ['Target', 'Item'], 'name': 'pita-dmelanogaster', 'label': 'pita', '@id': '/targets/pita-dmelanogaster/', 'title': 'pita (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f82424f9-ce30-417c-8cfc-5b5034455eb0', 'status': 'released'} dm3 2R 19428976 19448743 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF695SDU/ 15323517 Kevin White, UChicago 15125826ccf5daf924f3aeb2f985052b https://www.encodeproject.org/files/ENCFF914SLW/@@download/ENCFF914SLW.bigWig released s3://encode-public/2017/01/03/0ab3014b-286b-4a27-b141-41c74b8f72c1/ENCFF914SLW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF355NRJ bigWig bigWig signal of unique reads dm3 ENCSR962PQM Control ChIP-seq /fly-donors/ENCDO752BTJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37730/'], '@type': ['Target', 'Item'], 'name': 'pita-dmelanogaster', 'label': 'pita', '@id': '/targets/pita-dmelanogaster/', 'title': 'pita (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f82424f9-ce30-417c-8cfc-5b5034455eb0', 'status': 'released'} dm3 2R 19428976 19448743 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF695SDU/ 15314474 Kevin White, UChicago 41f2430b02e10a500b74d1eb463541f3 https://www.encodeproject.org/files/ENCFF355NRJ/@@download/ENCFF355NRJ.bigWig released s3://encode-public/2017/01/03/70887b7b-93ce-4ac1-b0f9-9bd67a56aaca/ENCFF355NRJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF242XMD bigWig bigWig read-depth normalized signal dm6 ENCSR962PQM Control ChIP-seq /fly-donors/ENCDO752BTJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37730/'], '@type': ['Target', 'Item'], 'name': 'pita-dmelanogaster', 'label': 'pita', '@id': '/targets/pita-dmelanogaster/', 'title': 'pita (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f82424f9-ce30-417c-8cfc-5b5034455eb0', 'status': 'released'} dm3 2R 19428976 19448743 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF368GJN/ 17430999 Kevin White, UChicago 4c2166abfb3a6decc0eb8320adaf4f15 https://www.encodeproject.org/files/ENCFF242XMD/@@download/ENCFF242XMD.bigWig released s3://encode-public/2017/01/04/b373049b-3358-41d4-ae97-847d94fefe1c/ENCFF242XMD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF039IAI bigWig bigWig signal of unique reads dm6 ENCSR962PQM Control ChIP-seq /fly-donors/ENCDO752BTJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37730/'], '@type': ['Target', 'Item'], 'name': 'pita-dmelanogaster', 'label': 'pita', '@id': '/targets/pita-dmelanogaster/', 'title': 'pita (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f82424f9-ce30-417c-8cfc-5b5034455eb0', 'status': 'released'} dm3 2R 19428976 19448743 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF368GJN/ 17418586 Kevin White, UChicago 7c007e6c51e5a6ae35c1933cb884f7db https://www.encodeproject.org/files/ENCFF039IAI/@@download/ENCFF039IAI.bigWig released s3://encode-public/2017/01/04/c3660ee6-4e04-4a96-95cb-577e56a9afc5/ENCFF039IAI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF252KZZ fastq fastq reads ENCSR153GHW Control ChIP-seq /fly-donors/ENCDO339SEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43383/'], '@type': ['Target', 'Item'], 'name': 'fkh-dmelanogaster', 'label': 'fkh', '@id': '/targets/fkh-dmelanogaster/', 'title': 'fkh (Drosophila melanogaster)', 'investigated_as': ['DNA replication', 'transcription factor'], 'uuid': '84318b9a-73fa-4a58-b641-8227e9ec3174', 'status': 'released'} dm3 3R 24366153 24484359 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3235526610 Kevin White, UChicago 11f55b4609e43270514fec4a01c516d6 https://www.encodeproject.org/files/ENCFF252KZZ/@@download/ENCFF252KZZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/68a65aed-f8cc-41f1-9174-1506d20a5ba2/ENCFF252KZZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF041XNA bam bam alignments dm3 ENCSR153GHW Control ChIP-seq /fly-donors/ENCDO339SEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43383/'], '@type': ['Target', 'Item'], 'name': 'fkh-dmelanogaster', 'label': 'fkh', '@id': '/targets/fkh-dmelanogaster/', 'title': 'fkh (Drosophila melanogaster)', 'investigated_as': ['DNA replication', 'transcription factor'], 'uuid': '84318b9a-73fa-4a58-b641-8227e9ec3174', 'status': 'released'} dm3 3R 24366153 24484359 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF252KZZ/, /files/ENCFF059UHX/ 4437610684 Kevin White, UChicago 03dba55ac8f0d264c481e73b641f4ee6 https://www.encodeproject.org/files/ENCFF041XNA/@@download/ENCFF041XNA.bam released s3://encode-public/2016/12/22/483d48fe-5eb9-45f9-84dd-6dbb90f5054a/ENCFF041XNA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF669FTQ bam bam alignments dm6 ENCSR153GHW Control ChIP-seq /fly-donors/ENCDO339SEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43383/'], '@type': ['Target', 'Item'], 'name': 'fkh-dmelanogaster', 'label': 'fkh', '@id': '/targets/fkh-dmelanogaster/', 'title': 'fkh (Drosophila melanogaster)', 'investigated_as': ['DNA replication', 'transcription factor'], 'uuid': '84318b9a-73fa-4a58-b641-8227e9ec3174', 'status': 'released'} dm3 3R 24366153 24484359 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF252KZZ/, /files/ENCFF479RCH/ 4401668842 Kevin White, UChicago 2691598f0390ce023e3493b5c82725b4 https://www.encodeproject.org/files/ENCFF669FTQ/@@download/ENCFF669FTQ.bam released s3://encode-public/2016/12/22/eb5882cf-eace-4a1c-bc7b-0e251064ae5e/ENCFF669FTQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF545XBN bigWig bigWig read-depth normalized signal dm3 ENCSR153GHW Control ChIP-seq /fly-donors/ENCDO339SEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43383/'], '@type': ['Target', 'Item'], 'name': 'fkh-dmelanogaster', 'label': 'fkh', '@id': '/targets/fkh-dmelanogaster/', 'title': 'fkh (Drosophila melanogaster)', 'investigated_as': ['DNA replication', 'transcription factor'], 'uuid': '84318b9a-73fa-4a58-b641-8227e9ec3174', 'status': 'released'} dm3 3R 24366153 24484359 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF041XNA/ 15840967 Kevin White, UChicago c9e2dbc03a3db2ddb9106853487d538f https://www.encodeproject.org/files/ENCFF545XBN/@@download/ENCFF545XBN.bigWig released s3://encode-public/2017/01/04/4e2fbe43-3782-4c2c-aa1a-710bd4f57979/ENCFF545XBN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF087NPZ bigWig bigWig signal of unique reads dm3 ENCSR153GHW Control ChIP-seq /fly-donors/ENCDO339SEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43383/'], '@type': ['Target', 'Item'], 'name': 'fkh-dmelanogaster', 'label': 'fkh', '@id': '/targets/fkh-dmelanogaster/', 'title': 'fkh (Drosophila melanogaster)', 'investigated_as': ['DNA replication', 'transcription factor'], 'uuid': '84318b9a-73fa-4a58-b641-8227e9ec3174', 'status': 'released'} dm3 3R 24366153 24484359 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF041XNA/ 15810361 Kevin White, UChicago 99ca7825cbd87f07a1375ec85551fff6 https://www.encodeproject.org/files/ENCFF087NPZ/@@download/ENCFF087NPZ.bigWig released s3://encode-public/2017/01/04/d73fde78-b250-41ac-ae18-fe87ab6246b6/ENCFF087NPZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF411ZJP bigWig bigWig signal of unique reads dm6 ENCSR153GHW Control ChIP-seq /fly-donors/ENCDO339SEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43383/'], '@type': ['Target', 'Item'], 'name': 'fkh-dmelanogaster', 'label': 'fkh', '@id': '/targets/fkh-dmelanogaster/', 'title': 'fkh (Drosophila melanogaster)', 'investigated_as': ['DNA replication', 'transcription factor'], 'uuid': '84318b9a-73fa-4a58-b641-8227e9ec3174', 'status': 'released'} dm3 3R 24366153 24484359 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF669FTQ/ 17773168 Kevin White, UChicago 9dfa181353989957b0285689c7bb91bb https://www.encodeproject.org/files/ENCFF411ZJP/@@download/ENCFF411ZJP.bigWig released s3://encode-public/2017/01/04/d7ab4560-ac0a-44b9-81d5-63de647159b8/ENCFF411ZJP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF800MAN bigWig bigWig read-depth normalized signal dm6 ENCSR153GHW Control ChIP-seq /fly-donors/ENCDO339SEJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43383/'], '@type': ['Target', 'Item'], 'name': 'fkh-dmelanogaster', 'label': 'fkh', '@id': '/targets/fkh-dmelanogaster/', 'title': 'fkh (Drosophila melanogaster)', 'investigated_as': ['DNA replication', 'transcription factor'], 'uuid': '84318b9a-73fa-4a58-b641-8227e9ec3174', 'status': 'released'} dm3 3R 24366153 24484359 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF669FTQ/ 17828018 Kevin White, UChicago f71a8d3c527b2132407a3ca2415d999f https://www.encodeproject.org/files/ENCFF800MAN/@@download/ENCFF800MAN.bigWig released s3://encode-public/2017/01/04/2ad8b3d5-697b-4556-a3cb-3534fce7c5ce/ENCFF800MAN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF652PMB fastq fastq reads ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF887KWI/ 2558548627 Michael Snyder, Stanford 5b52840529e493ab8391a6761499a38b SRA:SRR6213400 https://www.encodeproject.org/files/ENCFF652PMB/@@download/ENCFF652PMB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/26/c57b9bee-d6c8-483e-b838-e96651a927ea/ENCFF652PMB.fastq.gz mild to moderate bottlenecking ENCFF887KWI fastq fastq reads ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF652PMB/ 2414897192 Michael Snyder, Stanford 987b071d2fbc4121b7e5bb3953e61bbc SRA:SRR6213400 https://www.encodeproject.org/files/ENCFF887KWI/@@download/ENCFF887KWI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/26/29ab6857-635b-4d11-a805-ffe381fd529a/ENCFF887KWI.fastq.gz mild to moderate bottlenecking ENCFF464RDY bam bam unfiltered alignments GRCh38 ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF887KWI/, /files/ENCFF643CGH/, /files/ENCFF652PMB/ 4773213428 ENCODE Processing Pipeline c646b6a4e370d1df8cb92e986d6fb26e https://www.encodeproject.org/files/ENCFF464RDY/@@download/ENCFF464RDY.bam released s3://encode-public/2016/09/01/2f01ca75-4c7a-4377-b93b-31ec5e59e273/ENCFF464RDY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF481UTQ bam bam alignments hg19 ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF887KWI/, /files/ENCFF807MUK/, /files/ENCFF652PMB/ 3563280832 ENCODE Processing Pipeline 943d0c630d4eb4e588df4a4af5334dcd https://www.encodeproject.org/files/ENCFF481UTQ/@@download/ENCFF481UTQ.bam released s3://encode-public/2016/09/01/ea975d4a-cdfd-4339-944b-d3e33dbbdd62/ENCFF481UTQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF963LAI bam bam unfiltered alignments hg19 ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF887KWI/, /files/ENCFF807MUK/, /files/ENCFF652PMB/ 4766447298 ENCODE Processing Pipeline 3c5a57ae6ed5a43dd2bc7b169cee95db https://www.encodeproject.org/files/ENCFF963LAI/@@download/ENCFF963LAI.bam released s3://encode-public/2016/09/01/c15ab86d-e1cd-477c-8528-3a12f8319f49/ENCFF963LAI.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF654NZG bam bam alignments GRCh38 ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF887KWI/, /files/ENCFF643CGH/, /files/ENCFF652PMB/ 3569093630 ENCODE Processing Pipeline 2668a328f0655ec542bbbcb4278cd3b7 https://www.encodeproject.org/files/ENCFF654NZG/@@download/ENCFF654NZG.bam released s3://encode-public/2016/09/01/4a3c0b08-4c6a-4ce7-a0ac-1bbef60275db/ENCFF654NZG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF941PBK bam bam unfiltered alignments GRCh38 ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF887KWI/, /files/ENCFF652PMB/ 4783341563 ENCODE Processing Pipeline 4d88ea3d257b82d25df3474bf064205a https://www.encodeproject.org/files/ENCFF941PBK/@@download/ENCFF941PBK.bam released s3://encode-public/2020/06/02/30d9fe65-868e-41bf-b51c-619882414052/ENCFF941PBK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF815HLH bam bam alignments GRCh38 ENCSR439EEV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF887KWI/, /files/ENCFF652PMB/ 3508812738 ENCODE Processing Pipeline a52aa6d097d4603a91cb8adeac2be829 https://www.encodeproject.org/files/ENCFF815HLH/@@download/ENCFF815HLH.bam released s3://encode-public/2020/06/02/4fea9d71-0a76-4520-a6db-f6d28e224b62/ENCFF815HLH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF340ZXG fastq fastq reads ENCSR098GAV Control ChIP-seq /fly-donors/ENCDO335LHK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34847/'], '@type': ['Target', 'Item'], 'name': 'noc-dmelanogaster', 'label': 'noc', '@id': '/targets/noc-dmelanogaster/', 'title': 'noc (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '99621e57-0c40-4721-8913-81c56e866329', 'status': 'released'} dm3 2L 14445942 14543306 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1205894967 Kevin White, UChicago 4ec8cd40c9bb06f650c84f91949b3795 https://www.encodeproject.org/files/ENCFF340ZXG/@@download/ENCFF340ZXG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/786c6895-1058-494c-afc6-c8660e4adb37/ENCFF340ZXG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF248LPU bam bam alignments dm6 ENCSR098GAV Control ChIP-seq /fly-donors/ENCDO335LHK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34847/'], '@type': ['Target', 'Item'], 'name': 'noc-dmelanogaster', 'label': 'noc', '@id': '/targets/noc-dmelanogaster/', 'title': 'noc (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '99621e57-0c40-4721-8913-81c56e866329', 'status': 'released'} dm3 2L 14445942 14543306 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF340ZXG/, /files/ENCFF479RCH/ 1568231087 Kevin White, UChicago 86e6f9cf3c93f50a55d64c2c9425549c https://www.encodeproject.org/files/ENCFF248LPU/@@download/ENCFF248LPU.bam released s3://encode-public/2019/04/13/09f87668-90e7-4397-b2ea-733c0ad63dc7/ENCFF248LPU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF960MNA bigWig bigWig read-depth normalized signal dm6 ENCSR098GAV Control ChIP-seq /fly-donors/ENCDO335LHK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34847/'], '@type': ['Target', 'Item'], 'name': 'noc-dmelanogaster', 'label': 'noc', '@id': '/targets/noc-dmelanogaster/', 'title': 'noc (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '99621e57-0c40-4721-8913-81c56e866329', 'status': 'released'} dm3 2L 14445942 14543306 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF248LPU/ 17498984 Kevin White, UChicago 170abfd835f823e98ff3486baad31b1a https://www.encodeproject.org/files/ENCFF960MNA/@@download/ENCFF960MNA.bigWig released s3://encode-public/2019/04/16/893ca721-560a-4b49-85e5-05221b775e72/ENCFF960MNA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF909BFF bigWig bigWig signal of unique reads dm6 ENCSR098GAV Control ChIP-seq /fly-donors/ENCDO335LHK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34847/'], '@type': ['Target', 'Item'], 'name': 'noc-dmelanogaster', 'label': 'noc', '@id': '/targets/noc-dmelanogaster/', 'title': 'noc (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '99621e57-0c40-4721-8913-81c56e866329', 'status': 'released'} dm3 2L 14445942 14543306 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF248LPU/ 17484325 Kevin White, UChicago 42eecd6e8b86ab98c2cb2341fb6bd1f5 https://www.encodeproject.org/files/ENCFF909BFF/@@download/ENCFF909BFF.bigWig released s3://encode-public/2019/04/16/84af93a3-b5cc-42e8-944a-4e4da5734211/ENCFF909BFF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF812XFE fastq fastq reads ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF233LAO/ 3616492651 Michael Snyder, Stanford 62002e0d6d4aa5de3b8a71b2071ab562 SRA:SRR8660261 https://www.encodeproject.org/files/ENCFF812XFE/@@download/ENCFF812XFE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/27/2fbfe69d-8bda-4365-82a9-e567f6bc8ae8/ENCFF812XFE.fastq.gz mild to moderate bottlenecking ENCFF233LAO fastq fastq reads ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF812XFE/ 3443001899 Michael Snyder, Stanford 2561da83acd0dd489fd21abf3ead0e5f SRA:SRR8660261 https://www.encodeproject.org/files/ENCFF233LAO/@@download/ENCFF233LAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/27/f7b93df5-8255-4fd1-b8bc-7ae652482fcf/ENCFF233LAO.fastq.gz mild to moderate bottlenecking ENCFF941UFO bam bam unfiltered alignments GRCh38 ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF233LAO/, /files/ENCFF812XFE/ 6695377944 ENCODE Processing Pipeline 1f4780a300f514198ce9177f96d7b6f7 https://www.encodeproject.org/files/ENCFF941UFO/@@download/ENCFF941UFO.bam released s3://encode-public/2016/09/01/2666ceca-b0e1-4aa1-9838-c77b27c5210a/ENCFF941UFO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF268TFJ bam bam unfiltered alignments hg19 ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF233LAO/, /files/ENCFF812XFE/ 6685911027 ENCODE Processing Pipeline 97a01b57f25988cf37d8532c6f419c2c https://www.encodeproject.org/files/ENCFF268TFJ/@@download/ENCFF268TFJ.bam released s3://encode-public/2016/09/01/ea6be2ec-db3f-4333-a8f6-1a961f0623b1/ENCFF268TFJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF700KFV bam bam alignments hg19 ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF233LAO/, /files/ENCFF812XFE/ 4987247704 ENCODE Processing Pipeline 3ec984091c5b0390b6eecd00eb680242 https://www.encodeproject.org/files/ENCFF700KFV/@@download/ENCFF700KFV.bam released s3://encode-public/2016/09/01/bdbb99e4-8e14-4e33-b5e4-3ca7d084fe03/ENCFF700KFV.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF656AUU bam bam alignments GRCh38 ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF233LAO/, /files/ENCFF812XFE/ 5001466266 ENCODE Processing Pipeline a9219c8b6f60fdac0480061542d54cea https://www.encodeproject.org/files/ENCFF656AUU/@@download/ENCFF656AUU.bam released s3://encode-public/2016/09/01/eb3cda24-8a29-4ecb-975f-adfb87766492/ENCFF656AUU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF288IFN bam bam alignments GRCh38 ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF233LAO/, /files/ENCFF812XFE/ 4897590369 ENCODE Processing Pipeline 15fcc9bd444a13f98aeb4cbba1581bd4 https://www.encodeproject.org/files/ENCFF288IFN/@@download/ENCFF288IFN.bam released s3://encode-public/2020/06/03/b2fad1f2-d4f9-49c5-afa0-b7fbd31cf1fb/ENCFF288IFN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF003UEV bam bam unfiltered alignments GRCh38 ENCSR335XPG Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF233LAO/, /files/ENCFF812XFE/ 6707790460 ENCODE Processing Pipeline 54086772f552ed5190609bfb87f121ca https://www.encodeproject.org/files/ENCFF003UEV/@@download/ENCFF003UEV.bam released s3://encode-public/2020/06/03/168b0681-2333-49f5-a5c1-81bac18a084c/ENCFF003UEV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF885GMO fastq fastq reads ENCSR293ITU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25803/'], '@type': ['Target', 'Item'], 'name': 'SPDEF-human', 'label': 'SPDEF', '@id': '/targets/SPDEF-human/', 'title': 'SPDEF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aed68da4-48cc-4c15-98f6-6a917bfcbd3e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF342UTM/ 2357923713 Michael Snyder, Stanford 2a29c14fe122fb9e9b4dcc03500f99f8 SRA:SRR14104272 https://www.encodeproject.org/files/ENCFF885GMO/@@download/ENCFF885GMO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/dde46230-c958-492e-97df-226740b40c08/ENCFF885GMO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF342UTM fastq fastq reads ENCSR293ITU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25803/'], '@type': ['Target', 'Item'], 'name': 'SPDEF-human', 'label': 'SPDEF', '@id': '/targets/SPDEF-human/', 'title': 'SPDEF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aed68da4-48cc-4c15-98f6-6a917bfcbd3e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF885GMO/ 2235825170 Michael Snyder, Stanford 5d06153e172fb8129131c1c42bdc231e SRA:SRR14104272 https://www.encodeproject.org/files/ENCFF342UTM/@@download/ENCFF342UTM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/b9e2a385-98df-40bd-9c8f-1c3bb6e8519f/ENCFF342UTM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF106CIY bam bam unfiltered alignments GRCh38 ENCSR293ITU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/25803/'], '@type': ['Target', 'Item'], 'name': 'SPDEF-human', 'label': 'SPDEF', '@id': '/targets/SPDEF-human/', 'title': 'SPDEF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aed68da4-48cc-4c15-98f6-6a917bfcbd3e', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF342UTM/, /files/ENCFF885GMO/ 4310575562 ENCODE Processing Pipeline 68f0963343b8146218c157a13fc1371a https://www.encodeproject.org/files/ENCFF106CIY/@@download/ENCFF106CIY.bam released s3://encode-public/2020/04/20/dd033ff9-4e67-4fbe-a23a-ee3e299348ab/ENCFF106CIY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF197YHE bam bam alignments GRCh38 ENCSR293ITU Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 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'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF085HHB/ 3392276676 Michael Snyder, Stanford 831d7092701ea4b7afee58b274272b9c SRA:SRR5111473 https://www.encodeproject.org/files/ENCFF467VIQ/@@download/ENCFF467VIQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/a4aeffc8-8bfb-4b8b-9da5-33af20583c7d/ENCFF467VIQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF085HHB fastq fastq reads ENCSR354FNX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF467VIQ/ 3194827821 Michael Snyder, Stanford 7f7096e81dd5236c80678a26c8cad31c SRA:SRR5111473 https://www.encodeproject.org/files/ENCFF085HHB/@@download/ENCFF085HHB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/6392e3f4-baf2-43cd-9359-08d5342bdf48/ENCFF085HHB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF771QFT bam bam unfiltered alignments GRCh38 ENCSR354FNX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF085HHB/, /files/ENCFF467VIQ/, /files/ENCFF643CGH/ 6594348473 ENCODE Processing Pipeline 5abeef922dc1011d74b486cda2f547e9 https://www.encodeproject.org/files/ENCFF771QFT/@@download/ENCFF771QFT.bam released s3://encode-public/2016/08/13/d40bb1e6-a5ac-4ce0-8a5b-285bba218e33/ENCFF771QFT.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF470DTH bam bam alignments GRCh38 ENCSR354FNX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF085HHB/, /files/ENCFF467VIQ/, /files/ENCFF643CGH/ 5344998946 ENCODE Processing Pipeline 1420326f7e03d3b91e560f7d94b256e1 https://www.encodeproject.org/files/ENCFF470DTH/@@download/ENCFF470DTH.bam released s3://encode-public/2016/08/13/1b89b2e1-77aa-4fee-b7d5-73dfb5d66cc9/ENCFF470DTH.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF348BKF bam bam unfiltered alignments hg19 ENCSR354FNX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF085HHB/, /files/ENCFF807MUK/, /files/ENCFF467VIQ/ 5342631127 ENCODE Processing Pipeline 68dbd0d2c05dd389fe57cc7f04d7f9ba https://www.encodeproject.org/files/ENCFF876NRR/@@download/ENCFF876NRR.bam released s3://encode-public/2016/09/11/656714f1-4e7b-4060-a5df-3da032d7edc4/ENCFF876NRR.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF933HCT bam bam unfiltered alignments GRCh38 ENCSR354FNX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF085HHB/, /files/ENCFF467VIQ/ 6698403358 ENCODE Processing Pipeline 74aaf42b9872b13189d8aa0f7d35ecef https://www.encodeproject.org/files/ENCFF933HCT/@@download/ENCFF933HCT.bam released s3://encode-public/2020/06/02/9c58b30e-7cbb-46f6-992a-2cb56ec9b5cc/ENCFF933HCT.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF852BFO bam bam alignments GRCh38 ENCSR354FNX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF085HHB/, /files/ENCFF467VIQ/ 5400359717 ENCODE Processing Pipeline 12e843505130e7bd626c553b04f3386f https://www.encodeproject.org/files/ENCFF852BFO/@@download/ENCFF852BFO.bam released s3://encode-public/2020/06/02/a659400a-8948-4459-8787-477f6bb43371/ENCFF852BFO.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF194AYR fastq fastq reads ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF844ZDM/ 2189543700 Richard Myers, HAIB 7601d95a03fb8ef339e5217c00b92d18 SRA:SRR6213869 https://www.encodeproject.org/files/ENCFF194AYR/@@download/ENCFF194AYR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/2c77d5c3-ffbc-4520-ad17-21fdf2b5d24b/ENCFF194AYR.fastq.gz ENCFF844ZDM fastq fastq reads ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF194AYR/ 2287012110 Richard Myers, HAIB addb5edb7ca4b532db2f9c6dcb9ee2ee SRA:SRR6213869 https://www.encodeproject.org/files/ENCFF844ZDM/@@download/ENCFF844ZDM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/8bb1b839-b363-4c03-b7cf-c222b4a9d37d/ENCFF844ZDM.fastq.gz ENCFF742YLF bam bam unfiltered alignments GRCh38 ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF194AYR/, /files/ENCFF643CGH/, /files/ENCFF844ZDM/ 5429594084 ENCODE Processing Pipeline 30948455ba6d64df089437b7a2aab943 https://www.encodeproject.org/files/ENCFF742YLF/@@download/ENCFF742YLF.bam released s3://encode-public/2016/11/08/54f1537f-a0f5-4dc2-80d1-eacbdb8a6514/ENCFF742YLF.bam ENCODE3 GRCh38 archived ENCFF605DIY bam bam unfiltered alignments hg19 ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF194AYR/, /files/ENCFF807MUK/, /files/ENCFF844ZDM/ 5405568438 ENCODE Processing Pipeline 1b73867d58bbaaf8adb0e54ff16eda54 https://www.encodeproject.org/files/ENCFF605DIY/@@download/ENCFF605DIY.bam released s3://encode-public/2016/11/08/ead4eda4-3867-4ea2-9ec5-ed160a1423c7/ENCFF605DIY.bam ENCODE3 hg19 archived ENCFF327LUK bam bam alignments GRCh38 ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF194AYR/, /files/ENCFF643CGH/, /files/ENCFF844ZDM/ 3842015258 ENCODE Processing Pipeline 47d43f2d3e26d4543ffbc1926d3b8112 https://www.encodeproject.org/files/ENCFF327LUK/@@download/ENCFF327LUK.bam released s3://encode-public/2016/11/08/3241b316-6def-4f72-a611-160c5c0677eb/ENCFF327LUK.bam ENCODE3 GRCh38 archived ENCFF669MEQ bam bam alignments hg19 ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF194AYR/, /files/ENCFF807MUK/, /files/ENCFF844ZDM/ 3836939422 ENCODE Processing Pipeline ef0f1b1873e6e6438b83ba65796c7676 https://www.encodeproject.org/files/ENCFF669MEQ/@@download/ENCFF669MEQ.bam released s3://encode-public/2016/11/08/b9ee9a74-ac9d-4872-a347-94ae8f55e009/ENCFF669MEQ.bam ENCODE3 hg19 archived ENCFF107HXI bam bam unfiltered alignments GRCh38 ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF194AYR/, /files/ENCFF844ZDM/ 5447511496 ENCODE Processing Pipeline cfb5746664a6074abb9c0acc8e5b2c30 https://www.encodeproject.org/files/ENCFF107HXI/@@download/ENCFF107HXI.bam released s3://encode-public/2020/06/06/9f911da2-4e5c-44a1-9a6b-643c7786ba60/ENCFF107HXI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF435ZPW bam bam alignments GRCh38 ENCSR493PYN Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF194AYR/, /files/ENCFF844ZDM/ 3643733008 ENCODE Processing Pipeline 6ceecacdc229afe6ab3a849cc8f0a6b0 https://www.encodeproject.org/files/ENCFF435ZPW/@@download/ENCFF435ZPW.bam released s3://encode-public/2020/06/06/e2a05d85-6145-4fd5-b6f0-b259d73aebcf/ENCFF435ZPW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF259GGM fastq fastq reads ENCSR358RZO Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-858'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/128553/'], '@type': ['Target', 'Item'], 'name': 'TSHZ2-human', 'label': 'TSHZ2', '@id': '/targets/TSHZ2-human/', 'title': 'TSHZ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '05634a00-eae0-4b92-a168-4d804ca061f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF077JQK/ 2353809073 Michael Snyder, Stanford 25636e9190466376ee011fc8628084b1 SRA:SRR14638430 https://www.encodeproject.org/files/ENCFF259GGM/@@download/ENCFF259GGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/9971b79d-2dd8-4b3b-817a-9e8e18cc8174/ENCFF259GGM.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF077JQK fastq fastq reads ENCSR358RZO Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-858'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/128553/'], '@type': ['Target', 'Item'], 'name': 'TSHZ2-human', 'label': 'TSHZ2', '@id': '/targets/TSHZ2-human/', 'title': 'TSHZ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '05634a00-eae0-4b92-a168-4d804ca061f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF259GGM/ 2173402031 Michael Snyder, Stanford 7b4654a97a42d7726469f30c2dd27465 SRA:SRR14638430 https://www.encodeproject.org/files/ENCFF077JQK/@@download/ENCFF077JQK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/43258581-ae17-44aa-81aa-bb74cbad24e3/ENCFF077JQK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF481LFZ bam bam alignments GRCh38 ENCSR358RZO Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-858'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/128553/'], '@type': ['Target', 'Item'], 'name': 'TSHZ2-human', 'label': 'TSHZ2', '@id': '/targets/TSHZ2-human/', 'title': 'TSHZ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '05634a00-eae0-4b92-a168-4d804ca061f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF077JQK/, /files/ENCFF259GGM/ 3143898285 ENCODE Processing Pipeline 54278c9bea166f57b1da258efe9eaf83 https://www.encodeproject.org/files/ENCFF481LFZ/@@download/ENCFF481LFZ.bam released s3://encode-public/2020/04/21/7722cc1e-8a7c-4294-85fc-73ffb8b88579/ENCFF481LFZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF798QRI bam bam unfiltered alignments GRCh38 ENCSR358RZO Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-858'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/128553/'], '@type': ['Target', 'Item'], 'name': 'TSHZ2-human', 'label': 'TSHZ2', '@id': 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https://www.encodeproject.org/files/ENCFF908JZQ/@@download/ENCFF908JZQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/eccb0fe2-232c-4153-bfa9-8147c2dd0d87/ENCFF908JZQ.fastq.gz ENCFF668GBR fastq fastq reads ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 720932876 Tim Reddy, Duke 2001eaeae040bb5455e368d27fb37e06 SRA:SRR5093010 https://www.encodeproject.org/files/ENCFF668GBR/@@download/ENCFF668GBR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/9b2faa6b-2e91-4116-a7ff-a150a934c37f/ENCFF668GBR.fastq.gz ENCFF012ZAV fastq fastq reads ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 771089552 Tim Reddy, Duke da724303acc0172e758c57eebe2a697c SRA:SRR5093012 https://www.encodeproject.org/files/ENCFF012ZAV/@@download/ENCFF012ZAV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/2ec37cf9-6f58-41a1-bc24-6e42565aba1c/ENCFF012ZAV.fastq.gz ENCFF271MPT bam bam alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF908JZQ/ 537314748 Tim Reddy, Duke 2adcf230835455ea0dc7e1ecd127e717 https://www.encodeproject.org/files/ENCFF271MPT/@@download/ENCFF271MPT.bam released s3://encode-public/2016/10/19/b3dedef7-b1b1-4c47-9ab0-9646f3fe951d/ENCFF271MPT.bam Lab custom GRCh38 archived ENCFF403EBP bam bam alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF012ZAV/ 843894466 Tim Reddy, Duke 949a987f86cf7982e7dc485dba5508fe https://www.encodeproject.org/files/ENCFF403EBP/@@download/ENCFF403EBP.bam released s3://encode-public/2016/10/19/6a6b971b-1976-493b-97e6-c5733d9f51a3/ENCFF403EBP.bam Lab custom GRCh38 archived ENCFF711JTY bam bam alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF668GBR/ 801165691 Tim Reddy, Duke 8d6f0f36969c6297e3a9446c86b9559e https://www.encodeproject.org/files/ENCFF711JTY/@@download/ENCFF711JTY.bam released s3://encode-public/2016/10/19/a0dada80-89b6-4c46-b7b1-e8b4f903c51b/ENCFF711JTY.bam Lab custom GRCh38 archived ENCFF108HOO bam bam unfiltered alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF668GBR/, /files/ENCFF110MCL/ 984181886 ENCODE Processing Pipeline dd8cca5576b35fdf4915c3e6a6467140 https://www.encodeproject.org/files/ENCFF108HOO/@@download/ENCFF108HOO.bam released s3://encode-public/2020/11/13/f3568995-6714-4f83-9794-ea9e38ca15ba/ENCFF108HOO.bam ENCODE4 v1.6.1 GRCh38 released ENCFF611UXP bam bam alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF908JZQ/ 563626431 ENCODE Processing Pipeline 7807fd4882cd5a3d3d64f6bfa91136d7 https://www.encodeproject.org/files/ENCFF611UXP/@@download/ENCFF611UXP.bam released s3://encode-public/2020/11/13/40b5f899-f11f-46ba-9f6c-c6a8e4229bd6/ENCFF611UXP.bam ENCODE4 v1.6.1 GRCh38 released ENCFF506PEM bam bam unfiltered alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF012ZAV/, /files/ENCFF110MCL/ 1038767458 ENCODE Processing Pipeline 1df66b895624ec5c98bce4cc2535c3c1 https://www.encodeproject.org/files/ENCFF506PEM/@@download/ENCFF506PEM.bam released s3://encode-public/2020/11/13/6ba158d7-ccee-4a1a-afad-c61bcc0856bd/ENCFF506PEM.bam ENCODE4 v1.6.1 GRCh38 released ENCFF258XVX bam bam alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF012ZAV/, /files/ENCFF110MCL/ 885946561 ENCODE Processing Pipeline 90b840b4a13fab35bfa56a83655b5882 https://www.encodeproject.org/files/ENCFF258XVX/@@download/ENCFF258XVX.bam released s3://encode-public/2020/11/13/224ab090-a91b-4b46-9ea5-2060778245a9/ENCFF258XVX.bam ENCODE4 v1.6.1 GRCh38 released ENCFF204HPS bam bam alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF668GBR/, /files/ENCFF110MCL/ 839141283 ENCODE Processing Pipeline c2e579cffb209b0d0c074757e0edb7fd https://www.encodeproject.org/files/ENCFF204HPS/@@download/ENCFF204HPS.bam released s3://encode-public/2020/11/13/179e38c5-8263-48c8-9cee-fd48539d4695/ENCFF204HPS.bam ENCODE4 v1.6.1 GRCh38 released ENCFF938ZEO bam bam unfiltered alignments GRCh38 ENCSR611VYO Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-10-27 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF908JZQ/ 667944853 ENCODE Processing Pipeline c3e99e72f7c118b030804ae528bf7942 https://www.encodeproject.org/files/ENCFF938ZEO/@@download/ENCFF938ZEO.bam released s3://encode-public/2020/11/13/5488902c-f784-4034-9dc6-be5589cf6982/ENCFF938ZEO.bam ENCODE4 v1.6.1 GRCh38 released ENCFF014MYU fastq fastq reads ENCSR032KPU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7071/'], '@type': ['Target', 'Item'], 'name': 'KLF10-human', 'label': 'KLF10', '@id': '/targets/KLF10-human/', 'title': 'KLF10 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ddeb374-009b-4630-bd41-4c7c5fb40f96', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF152MTL/ 2645076797 Michael Snyder, Stanford 296b185f8570c44b7680dc201b86d997 SRA:SRR14103341 https://www.encodeproject.org/files/ENCFF014MYU/@@download/ENCFF014MYU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/c435863f-34c1-4ed4-92e7-f9d2a98a75ae/ENCFF014MYU.fastq.gz mild to moderate bottlenecking ENCFF152MTL fastq fastq reads ENCSR032KPU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7071/'], '@type': ['Target', 'Item'], 'name': 'KLF10-human', 'label': 'KLF10', '@id': '/targets/KLF10-human/', 'title': 'KLF10 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ddeb374-009b-4630-bd41-4c7c5fb40f96', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF014MYU/ 3026770547 Michael Snyder, Stanford 2bcb9077fc017df4b0d7afee47f7a4d1 SRA:SRR14103341 https://www.encodeproject.org/files/ENCFF152MTL/@@download/ENCFF152MTL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/08/84584d2a-0cff-44b0-8478-dfb86d19597e/ENCFF152MTL.fastq.gz mild to moderate bottlenecking ENCFF852UIW bam bam unfiltered alignments GRCh38 ENCSR032KPU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7071/'], '@type': ['Target', 'Item'], 'name': 'KLF10-human', 'label': 'KLF10', '@id': '/targets/KLF10-human/', 'title': 'KLF10 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ddeb374-009b-4630-bd41-4c7c5fb40f96', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF014MYU/, /files/ENCFF152MTL/ 5428132212 ENCODE Processing Pipeline 6b4487eec7d0144ff6c0b5f75154c283 https://www.encodeproject.org/files/ENCFF852UIW/@@download/ENCFF852UIW.bam released s3://encode-public/2020/05/15/1fb4787a-1098-4b3f-8fd9-88f0e772b342/ENCFF852UIW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF683TTV bam bam alignments GRCh38 ENCSR032KPU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7071/'], '@type': ['Target', 'Item'], 'name': 'KLF10-human', 'label': 'KLF10', '@id': '/targets/KLF10-human/', 'title': 'KLF10 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ddeb374-009b-4630-bd41-4c7c5fb40f96', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF014MYU/, /files/ENCFF152MTL/ 4049169543 ENCODE Processing Pipeline a5f82619f2c03d3e007e1f64db7f67ae https://www.encodeproject.org/files/ENCFF683TTV/@@download/ENCFF683TTV.bam released s3://encode-public/2020/05/15/76011909-63cb-48eb-bb99-5e860442614d/ENCFF683TTV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF779RGX fastq fastq reads ENCSR505NGD Control ChIP-seq /fly-donors/ENCDO399QXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42469/'], '@type': ['Target', 'Item'], 'name': 'CG15696-dmelanogaster', 'label': 'CG15696', '@id': '/targets/CG15696-dmelanogaster/', 'title': 'CG15696 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '51d8c3b3-ccfc-413b-b97a-689d3dfc3212', 'status': 'released'} dm3 3R 16663650 16686623 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 984592030 Kevin White, UChicago 84f9f378c8bfb54076f1af113f4a0dab https://www.encodeproject.org/files/ENCFF779RGX/@@download/ENCFF779RGX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/bb7e81a3-d09b-45fb-820f-925311c18c1a/ENCFF779RGX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF621GBE bam bam alignments dm6 ENCSR505NGD Control ChIP-seq /fly-donors/ENCDO399QXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42469/'], '@type': ['Target', 'Item'], 'name': 'CG15696-dmelanogaster', 'label': 'CG15696', '@id': '/targets/CG15696-dmelanogaster/', 'title': 'CG15696 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '51d8c3b3-ccfc-413b-b97a-689d3dfc3212', 'status': 'released'} dm3 3R 16663650 16686623 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF779RGX/, /files/ENCFF479RCH/ 1335970575 Kevin White, UChicago 2fe2fd9a54da2f1c70e189b6633f9768 https://www.encodeproject.org/files/ENCFF621GBE/@@download/ENCFF621GBE.bam released s3://encode-public/2019/04/13/d7b6197f-84cf-49d0-9340-9ef316baa3d5/ENCFF621GBE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF388JOT bigWig bigWig signal of unique reads dm6 ENCSR505NGD Control ChIP-seq /fly-donors/ENCDO399QXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42469/'], '@type': ['Target', 'Item'], 'name': 'CG15696-dmelanogaster', 'label': 'CG15696', '@id': '/targets/CG15696-dmelanogaster/', 'title': 'CG15696 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '51d8c3b3-ccfc-413b-b97a-689d3dfc3212', 'status': 'released'} dm3 3R 16663650 16686623 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF621GBE/ 17803332 Kevin White, UChicago c4ac64d8f0fd0f9184b326506a12fb93 https://www.encodeproject.org/files/ENCFF388JOT/@@download/ENCFF388JOT.bigWig released s3://encode-public/2019/04/16/0f2155de-6d87-4bc7-b255-8d36643dcaae/ENCFF388JOT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF875LBT bigWig bigWig read-depth normalized signal dm6 ENCSR505NGD Control ChIP-seq /fly-donors/ENCDO399QXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42469/'], '@type': ['Target', 'Item'], 'name': 'CG15696-dmelanogaster', 'label': 'CG15696', '@id': '/targets/CG15696-dmelanogaster/', 'title': 'CG15696 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '51d8c3b3-ccfc-413b-b97a-689d3dfc3212', 'status': 'released'} dm3 3R 16663650 16686623 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF621GBE/ 17861104 Kevin White, UChicago 0c833729bff8fa8bb6391de44d662052 https://www.encodeproject.org/files/ENCFF875LBT/@@download/ENCFF875LBT.bigWig released s3://encode-public/2019/04/16/e8d25acf-9e66-42dd-ac63-1f44f95e8369/ENCFF875LBT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF046EUV tagAlign tagAlign alignments hg19 ENCSR339WBT Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF591SDP/ 212162377 Anshul Kundaje, Stanford f7dde1eae451c700f52ef7d568cf2c3b https://www.encodeproject.org/files/ENCFF046EUV/@@download/ENCFF046EUV.tagAlign.gz archived s3://encode-public/2016/05/02/6c2e800e-e983-4b8c-9fef-afd783afcb19/ENCFF046EUV.tagAlign.gz Lab custom hg19 archived low read length ENCFF591SDP fastq fastq reads ENCSR339WBT Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1916931827 Zhiping Weng, UMass 9bf8eb066d064c723ce810752e7ac1b1 SRA:SRR316174 https://www.encodeproject.org/files/ENCFF591SDP/@@download/ENCFF591SDP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/19/8e98bf36-7441-4656-8990-567f5bb392d4/ENCFF591SDP.fastq.gz low read length ENCFF468JNY bam bam unfiltered alignments hg19 ENCSR339WBT Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF591SDP/, /files/ENCFF807MUK/ 2371290305 ENCODE Processing Pipeline 81d8bdd8547b20ddecd45097ccc5f217 https://www.encodeproject.org/files/ENCFF468JNY/@@download/ENCFF468JNY.bam released s3://encode-public/2016/12/19/c3fc61f4-85e0-4f2f-93f4-017a1c36f9bb/ENCFF468JNY.bam ENCODE3 hg19 archived low read length ENCFF149VFJ bam bam alignments hg19 ENCSR339WBT Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF591SDP/, /files/ENCFF807MUK/ 1537058410 ENCODE Processing Pipeline fb80e2d716d9f51229ea43baeafb1b63 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Processing Pipeline d307c9bad4ca1531af5aa6f78ed8ead2 https://www.encodeproject.org/files/ENCFF341BPJ/@@download/ENCFF341BPJ.bam released s3://encode-public/2016/12/19/483d024c-2d6e-4183-be76-f71acfb3c2bb/ENCFF341BPJ.bam ENCODE3 GRCh38 archived low read length ENCFF965XZF bam bam alignments GRCh38 ENCSR339WBT Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF591SDP/ 1670198362 ENCODE Processing Pipeline 791e801d5402d2f6ae05b99bf54d350f https://www.encodeproject.org/files/ENCFF965XZF/@@download/ENCFF965XZF.bam released s3://encode-public/2020/10/08/0cd7f811-a1a8-433b-bfef-abeb11bb7fa9/ENCFF965XZF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF689ZYG bam bam unfiltered alignments GRCh38 ENCSR339WBT Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF591SDP/ 2308343265 ENCODE Processing Pipeline 408382ff6cda77e550e59eea8a7cc543 https://www.encodeproject.org/files/ENCFF689ZYG/@@download/ENCFF689ZYG.bam released s3://encode-public/2020/10/08/d686cc7a-8058-45d1-b34d-80cc8250de0c/ENCFF689ZYG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF301HIK fastq fastq reads ENCSR481GXM Control ChIP-seq /fly-donors/ENCDO471ETN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31384/'], '@type': ['Target', 'Item'], 'name': 'Usf-dmelanogaster', 'label': 'Usf', '@id': '/targets/Usf-dmelanogaster/', 'title': 'Usf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06df9d8e-e3b8-4a35-9fcf-3ba4e8678ae3', 'status': 'released'} dm3 X 4435091 4456207 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2136374952 Kevin White, UChicago 33a10e92a9292a698964648a8a9a9bb3 https://www.encodeproject.org/files/ENCFF301HIK/@@download/ENCFF301HIK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/f25a42f2-a7c8-4fee-b6ba-66cbbe9a61f1/ENCFF301HIK.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF014RNF bam bam alignments dm6 ENCSR481GXM Control ChIP-seq /fly-donors/ENCDO471ETN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 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Control ChIP-seq /fly-donors/ENCDO471ETN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31384/'], '@type': ['Target', 'Item'], 'name': 'Usf-dmelanogaster', 'label': 'Usf', '@id': '/targets/Usf-dmelanogaster/', 'title': 'Usf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06df9d8e-e3b8-4a35-9fcf-3ba4e8678ae3', 'status': 'released'} dm3 X 4435091 4456207 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF301HIK/, /files/ENCFF059UHX/ 3022372298 Kevin White, UChicago ce9621cb41d35f7a68bfa4a331272392 https://www.encodeproject.org/files/ENCFF207LDW/@@download/ENCFF207LDW.bam released s3://encode-public/2016/12/23/9bc10ec7-c1d7-4f11-bc22-74c8fa145b37/ENCFF207LDW.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF774OUR bigWig bigWig signal of unique reads dm3 ENCSR481GXM Control ChIP-seq /fly-donors/ENCDO471ETN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31384/'], '@type': ['Target', 'Item'], 'name': 'Usf-dmelanogaster', 'label': 'Usf', '@id': '/targets/Usf-dmelanogaster/', 'title': 'Usf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06df9d8e-e3b8-4a35-9fcf-3ba4e8678ae3', 'status': 'released'} dm3 X 4435091 4456207 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF207LDW/ 15854104 Kevin White, UChicago 67ed8e2e4da7a1e1d43291f6544b899f https://www.encodeproject.org/files/ENCFF774OUR/@@download/ENCFF774OUR.bigWig released s3://encode-public/2017/01/03/02829ac4-56b3-4ee4-bd32-b0c5631c6fa1/ENCFF774OUR.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF627QLY bigWig bigWig read-depth normalized signal dm3 ENCSR481GXM Control ChIP-seq /fly-donors/ENCDO471ETN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31384/'], '@type': ['Target', 'Item'], 'name': 'Usf-dmelanogaster', 'label': 'Usf', '@id': '/targets/Usf-dmelanogaster/', 'title': 'Usf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06df9d8e-e3b8-4a35-9fcf-3ba4e8678ae3', 'status': 'released'} dm3 X 4435091 4456207 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF207LDW/ 15883317 Kevin White, UChicago 04d17b1b26a9927893e1ccb5885f3cfb https://www.encodeproject.org/files/ENCFF627QLY/@@download/ENCFF627QLY.bigWig released s3://encode-public/2017/01/03/fd1365b7-5d7b-4cb0-a9fd-9b0571188859/ENCFF627QLY.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF322CZN bigWig bigWig read-depth normalized signal dm6 ENCSR481GXM Control ChIP-seq /fly-donors/ENCDO471ETN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31384/'], '@type': ['Target', 'Item'], 'name': 'Usf-dmelanogaster', 'label': 'Usf', '@id': '/targets/Usf-dmelanogaster/', 'title': 'Usf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06df9d8e-e3b8-4a35-9fcf-3ba4e8678ae3', 'status': 'released'} dm3 X 4435091 4456207 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF014RNF/ 17771998 Kevin White, UChicago 4c7f70b287d057894dfc9545ad6a813a https://www.encodeproject.org/files/ENCFF322CZN/@@download/ENCFF322CZN.bigWig released s3://encode-public/2017/01/04/55779328-570f-41c6-9b49-b13e816c2b9d/ENCFF322CZN.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF077RGA bigWig bigWig signal of unique reads dm6 ENCSR481GXM Control ChIP-seq /fly-donors/ENCDO471ETN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31384/'], '@type': ['Target', 'Item'], 'name': 'Usf-dmelanogaster', 'label': 'Usf', '@id': '/targets/Usf-dmelanogaster/', 'title': 'Usf (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06df9d8e-e3b8-4a35-9fcf-3ba4e8678ae3', 'status': 'released'} dm3 X 4435091 4456207 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF014RNF/ 17737008 Kevin White, UChicago 3acda146e55902052ce74a9e5c02e488 https://www.encodeproject.org/files/ENCFF077RGA/@@download/ENCFF077RGA.bigWig released s3://encode-public/2017/01/04/fe2fd861-d5bd-4229-8b46-d43bc8d0eb40/ENCFF077RGA.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF795BNL fastq fastq reads ENCSR707UNX Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2020996194 Kevin White, UChicago c6d2f86e1bd7d55d0e0c2b43a8a49843 https://www.encodeproject.org/files/ENCFF795BNL/@@download/ENCFF795BNL.fastq.gz Illumina HiSeq 4000 /files/ENCFF131JHB/ released s3://encode-public/2018/09/18/9555ee33-aa2b-4d64-8e7c-56d0fc22f5aa/ENCFF795BNL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF178SZQ bam bam alignments dm6 ENCSR707UNX Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF795BNL/, /files/ENCFF479RCH/ 2692591931 Kevin White, UChicago a68951e71c389512de188ebdabb75ad2 https://www.encodeproject.org/files/ENCFF178SZQ/@@download/ENCFF178SZQ.bam released s3://encode-public/2018/09/19/9db6d6ce-5481-4721-92ff-7266547f6057/ENCFF178SZQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF395SKA bigWig bigWig signal of unique reads dm6 ENCSR707UNX Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF178SZQ/ 17867725 Kevin White, UChicago c26c297d1c757666bc2f81ac0eb1fc0a https://www.encodeproject.org/files/ENCFF395SKA/@@download/ENCFF395SKA.bigWig released s3://encode-public/2018/09/19/7dbebe6a-4a96-465f-b401-eeef6539a1f6/ENCFF395SKA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF368LXP bigWig bigWig read-depth normalized signal dm6 ENCSR707UNX Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF155BZF/, /files/ENCFF611OKI/ 220203308 Anshul Kundaje, Stanford f0e743606f341967b666b8017c1f0c7a https://www.encodeproject.org/files/ENCFF060SCO/@@download/ENCFF060SCO.tagAlign.gz archived s3://encode-public/2016/03/30/ca033e22-ae64-4cf4-a9d8-1f629bf3fdd7/ENCFF060SCO.tagAlign.gz Lab custom hg19 archived low read length ENCFF611OKI fastq fastq reads ENCSR541DBO Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 575194130 Zhiping Weng, UMass bc5bcb9adea8ba9e212d2d74a1cb1b0f SRA:SRR642526 https://www.encodeproject.org/files/ENCFF611OKI/@@download/ENCFF611OKI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/2d504afb-4d78-431f-a727-769da7ee2fa9/ENCFF611OKI.fastq.gz low read length ENCFF155BZF fastq fastq reads ENCSR541DBO Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1003695165 Zhiping Weng, UMass 73ab6a8621bf5ff3195f53cd80251878 SRA:SRR642525 https://www.encodeproject.org/files/ENCFF155BZF/@@download/ENCFF155BZF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/f3cfa616-dce0-4018-acdd-c31d907723a9/ENCFF155BZF.fastq.gz low read length ENCFF178UJX bam bam unfiltered alignments GRCh38 ENCSR541DBO Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF110MCL/, /files/ENCFF611OKI/, /files/ENCFF155BZF/ 1893653528 ENCODE Processing Pipeline ecc1a8bc3461174e340b2ce23aec40b9 https://www.encodeproject.org/files/ENCFF178UJX/@@download/ENCFF178UJX.bam released s3://encode-public/2020/10/08/466b5a3d-6dba-404a-9eef-3b093525f592/ENCFF178UJX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF577WJK bam bam unfiltered alignments hg19 ENCSR541DBO Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0002108 small intestine tissue 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/human-donors/ENCDO119ASK/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF611OKI/, /files/ENCFF643CGH/, /files/ENCFF155BZF/ 1291374556 ENCODE Processing Pipeline 7bdc2738d5ee8dfe5c17a6edfa0c46cc https://www.encodeproject.org/files/ENCFF384HEG/@@download/ENCFF384HEG.bam released s3://encode-public/2016/12/19/9c988a20-aba9-4e24-b39b-95ccb0d79481/ENCFF384HEG.bam ENCODE3 GRCh38 archived low read length ENCFF019FWR bam bam alignments hg19 ENCSR541DBO Control ChIP-seq /human-donors/ENCDO119ASK/ UBERON:0002108 small intestine tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF611OKI/, /files/ENCFF807MUK/, /files/ENCFF155BZF/ 1291717839 ENCODE Processing Pipeline bace610acf574da6c4ec647cf63ca84b https://www.encodeproject.org/files/ENCFF019FWR/@@download/ENCFF019FWR.bam released s3://encode-public/2016/12/19/1bda5411-aae3-4f59-abbc-eee238bd7c96/ENCFF019FWR.bam ENCODE3 hg19 archived low read length ENCFF798UTW tagAlign tagAlign 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s3://encode-public/2016/11/02/6579b0bf-4c54-40f7-bf65-2dc257a85b4b/ENCFF392PGR.bam ENCODE3 hg19 archived ENCFF393SBS bam bam alignments GRCh38 ENCSR328FQB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1, 1_2 101 /files/ENCFF060UJV/, /files/ENCFF640ALF/, /files/ENCFF748BIS/, /files/ENCFF626NFD/, /files/ENCFF643CGH/ 9289684239 ENCODE Processing Pipeline 46923c5063de482d10c2643a3efef870 https://www.encodeproject.org/files/ENCFF393SBS/@@download/ENCFF393SBS.bam released s3://encode-public/2016/11/02/5a9ada71-59d3-41ab-b7d1-b8c8abd55a44/ENCFF393SBS.bam ENCODE3 GRCh38 archived ENCFF035IZJ bam bam alignments hg19 ENCSR328FQB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001515 thoracic aorta tissue Homo sapiens DNA 2016-11-07 ENCODE 450-650 1 1_1, 1_2 101 /files/ENCFF060UJV/, /files/ENCFF640ALF/, /files/ENCFF807MUK/, /files/ENCFF748BIS/, /files/ENCFF626NFD/ 9264588878 ENCODE Processing Pipeline 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/files/ENCFF110MCL/, /files/ENCFF640ALF/, /files/ENCFF060UJV/, /files/ENCFF626NFD/, /files/ENCFF748BIS/ 12034520203 ENCODE Processing Pipeline a1a7598d9aa878b108606f40af012adc https://www.encodeproject.org/files/ENCFF149PEY/@@download/ENCFF149PEY.bam released s3://encode-public/2020/06/02/c7fd9ab4-37a3-42c4-bdf5-5907ff6eab30/ENCFF149PEY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF666KHN fastq fastq reads ENCSR033NNL Control ChIP-seq /fly-donors/ENCDO102QUM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39581/'], '@type': ['Target', 'Item'], 'name': 'stwl-dmelanogaster', 'label': 'stwl', '@id': 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'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39581/'], '@type': ['Target', 'Item'], 'name': 'stwl-dmelanogaster', 'label': 'stwl', '@id': '/targets/stwl-dmelanogaster/', 'title': 'stwl (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b07e6421-3f66-40ef-a060-d229266b74a6', 'status': 'released'} dm3 3L 14395071 14414314 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF666KHN/, /files/ENCFF479RCH/ 2761163365 Kevin White, UChicago 73501559bc7044068c69b0f08718074b https://www.encodeproject.org/files/ENCFF987TQZ/@@download/ENCFF987TQZ.bam released s3://encode-public/2018/09/19/3b8cbaf9-a00d-4034-9eb1-32fe7d662ba8/ENCFF987TQZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF526GOV bigWig bigWig signal of unique reads dm6 ENCSR033NNL Control ChIP-seq /fly-donors/ENCDO102QUM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39581/'], '@type': ['Target', 'Item'], 'name': 'stwl-dmelanogaster', 'label': 'stwl', '@id': '/targets/stwl-dmelanogaster/', 'title': 'stwl (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'b07e6421-3f66-40ef-a060-d229266b74a6', 'status': 'released'} dm3 3L 14395071 14414314 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF987TQZ/ 17900619 Kevin White, UChicago 1f69e2e44f5f05ac917c7b3fc8d18c04 https://www.encodeproject.org/files/ENCFF526GOV/@@download/ENCFF526GOV.bigWig released s3://encode-public/2018/09/19/d7fdb9b9-6e6b-4eef-839a-4abaa53d1b81/ENCFF526GOV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF516RRL bigWig bigWig read-depth normalized signal dm6 ENCSR033NNL Control ChIP-seq /fly-donors/ENCDO102QUM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39581/'], '@type': ['Target', 'Item'], 'name': 'stwl-dmelanogaster', 'label': 'stwl', '@id': '/targets/stwl-dmelanogaster/', 'title': 'stwl (Drosophila melanogaster)', 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ENCODE Processing Pipeline 31ecfa73d11b1b863b2254a15deb55e8 https://www.encodeproject.org/files/ENCFF928UPR/@@download/ENCFF928UPR.bam released s3://encode-public/2017/02/11/6a80fec7-82e4-4fd2-a059-c1e697f4c042/ENCFF928UPR.bam ENCODE3 hg19 archived low read length ENCFF373TTH bam bam alignments hg19 ENCSR867VPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF299MMO/, /files/ENCFF807MUK/ 3100703905 ENCODE Processing Pipeline 9eee79ce9c7295eba838284d480d82ef https://www.encodeproject.org/files/ENCFF373TTH/@@download/ENCFF373TTH.bam released s3://encode-public/2017/02/11/b9590397-a566-4ad0-8893-9e0a426a980d/ENCFF373TTH.bam ENCODE3 hg19 archived low read length ENCFF922FTF bam bam unfiltered alignments GRCh38 ENCSR867VPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF592CBA/ 4766066929 ENCODE Processing Pipeline 8c06d4eb78a84e998ded5705d51fbdc4 https://www.encodeproject.org/files/ENCFF922FTF/@@download/ENCFF922FTF.bam released s3://encode-public/2020/10/28/cbe3a46d-7063-4910-8429-b800aa13d11e/ENCFF922FTF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF311ZFA bam bam alignments GRCh38 ENCSR867VPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF592CBA/ 2517489392 ENCODE Processing Pipeline 456f9bd782a88106e8633c2f55ab1bb3 https://www.encodeproject.org/files/ENCFF311ZFA/@@download/ENCFF311ZFA.bam released s3://encode-public/2020/10/28/c2c89eb3-e966-4b21-9728-43da1c361d6a/ENCFF311ZFA.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF615CXW bam bam unfiltered alignments GRCh38 ENCSR867VPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF299MMO/ 5074980086 ENCODE Processing Pipeline 01524a538b9f8895694bb4b0036d2f4a https://www.encodeproject.org/files/ENCFF615CXW/@@download/ENCFF615CXW.bam released s3://encode-public/2020/10/28/8845e8c9-2bae-42c8-8575-c6743e7c0ac1/ENCFF615CXW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF469NRZ bam bam alignments GRCh38 ENCSR867VPL Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF299MMO/ 2692288078 ENCODE Processing Pipeline ccd85f27c93eb7955b535c1a1ab7d927 https://www.encodeproject.org/files/ENCFF469NRZ/@@download/ENCFF469NRZ.bam released s3://encode-public/2020/10/28/3dcc4c25-0761-4abf-bebc-bd2a4d637498/ENCFF469NRZ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF519TSN fastq fastq reads ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 133705764 Michael Snyder, Stanford ae830a6742e56f6067cffc2bf847b4b0 https://www.encodeproject.org/files/ENCFF519TSN/@@download/ENCFF519TSN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/be058cfc-5582-4347-a70e-10c09e41dad3/ENCFF519TSN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF211XXG fastq fastq reads ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 97573805 Michael Snyder, Stanford 6ea55e2dd903db9d76e167b4b6d7e9d5 https://www.encodeproject.org/files/ENCFF211XXG/@@download/ENCFF211XXG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/240736f7-ed9c-4b0e-906c-80fe96cdeca4/ENCFF211XXG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF772AMK bam bam alignments ce10 ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF211XXG/, /files/ENCFF519TSN/, /files/ENCFF987UMF/ 248867518 Kevin White, UChicago ad50baf09028146804a33cd7dd1c0711 https://www.encodeproject.org/files/ENCFF772AMK/@@download/ENCFF772AMK.bam released s3://encode-public/2017/04/27/6d7d115d-ba1c-4cc1-aa4e-8d2c55bf064a/ENCFF772AMK.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF863ODD bam bam alignments ce11 ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF211XXG/, /files/ENCFF519TSN/, /files/ENCFF586MOL/ 249048483 Kevin White, UChicago cb39537893dc0fb42f355c63a1c1e085 https://www.encodeproject.org/files/ENCFF863ODD/@@download/ENCFF863ODD.bam released s3://encode-public/2017/04/27/7f94b79b-c18a-4a6a-b362-9c6cbda7190b/ENCFF863ODD.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF873BJE bigWig bigWig signal of unique reads ce10 ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF772AMK/ 10028893 Kevin White, UChicago e751193697c1fde9f52efcffec5e0550 https://www.encodeproject.org/files/ENCFF873BJE/@@download/ENCFF873BJE.bigWig released s3://encode-public/2017/04/29/742d4ebe-f43b-433d-ba40-2cdd0fbdc773/ENCFF873BJE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF027XZW bigWig bigWig read-depth normalized signal ce10 ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF772AMK/ 10020026 Kevin White, UChicago e078fca8f1cf750918df215f10ef0c0e https://www.encodeproject.org/files/ENCFF027XZW/@@download/ENCFF027XZW.bigWig released s3://encode-public/2017/04/29/9866ed44-8a95-4ea0-8b9c-098d94a61f96/ENCFF027XZW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF729HFM bigWig bigWig read-depth normalized signal ce11 ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF863ODD/ 10009434 Kevin White, UChicago f3b2f214aa8206ea5f2ee3154ee065ac https://www.encodeproject.org/files/ENCFF729HFM/@@download/ENCFF729HFM.bigWig released s3://encode-public/2017/04/29/02d70a39-010c-43da-b900-ca11223de9f0/ENCFF729HFM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF733JXK bigWig bigWig signal of unique reads ce11 ENCSR696TMF Control ChIP-seq /worm-donors/ENCDO563OZA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177343/'], '@type': ['Target', 'Item'], 'name': 'skn-1-celegans', 'label': 'skn-1', '@id': '/targets/skn-1-celegans/', 'title': 'skn-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'ba4a9b8c-18ef-4cc2-8dad-5111f6396352', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF863ODD/ 10022508 Kevin White, UChicago 1534fc7460a3828a39352379a4fdcc2d https://www.encodeproject.org/files/ENCFF733JXK/@@download/ENCFF733JXK.bigWig released s3://encode-public/2017/04/29/f04d0ce7-e16c-4f41-b655-8a7a2c60cef1/ENCFF733JXK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF826QRE fastq fastq reads ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF422CWQ/ 1969634825 Michael Snyder, Stanford 81b21634da0ef475fc3527f0645373df SRA:SRR6212919 https://www.encodeproject.org/files/ENCFF826QRE/@@download/ENCFF826QRE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/23/b461195a-ad7f-4346-8c1d-ae4bb7a9316f/ENCFF826QRE.fastq.gz ENCFF422CWQ fastq fastq reads ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF826QRE/ 1969874847 Michael Snyder, Stanford 7e6473b12a99919cf14f298d80e8cbb7 SRA:SRR6212919 https://www.encodeproject.org/files/ENCFF422CWQ/@@download/ENCFF422CWQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/23/ab93115d-d199-42be-a96c-b3c845a6f47a/ENCFF422CWQ.fastq.gz ENCFF452PGL bam bam unfiltered alignments GRCh38 ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF826QRE/, /files/ENCFF643CGH/, /files/ENCFF422CWQ/ 4335734434 ENCODE Processing Pipeline 0c89fbc2485e343c509fbfe5dfe22964 https://www.encodeproject.org/files/ENCFF452PGL/@@download/ENCFF452PGL.bam released s3://encode-public/2016/05/06/e728415f-0162-4cf5-8858-53b700997289/ENCFF452PGL.bam ENCODE3 GRCh38 archived ENCFF736XBY bam bam alignments GRCh38 ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF826QRE/, /files/ENCFF643CGH/, /files/ENCFF422CWQ/ 3608395801 ENCODE Processing Pipeline 6e5f1f16363dbba3a5a7f3d2f34bc6bd https://www.encodeproject.org/files/ENCFF736XBY/@@download/ENCFF736XBY.bam released s3://encode-public/2016/05/06/5600cfae-58eb-47fd-bbf4-358f17f47aa3/ENCFF736XBY.bam ENCODE3 GRCh38 archived ENCFF732GYU bam bam unfiltered alignments hg19 ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF826QRE/, /files/ENCFF807MUK/, /files/ENCFF422CWQ/ 4329744470 ENCODE Processing Pipeline 7bad0040cf6bc8c66e342935c826b8ae https://www.encodeproject.org/files/ENCFF732GYU/@@download/ENCFF732GYU.bam released s3://encode-public/2016/12/06/1501719a-873d-4993-9cb2-79e73cdabc26/ENCFF732GYU.bam ENCODE3 hg19 archived ENCFF451YVL bam bam alignments hg19 ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF826QRE/, /files/ENCFF807MUK/, /files/ENCFF422CWQ/ 3602405696 ENCODE Processing Pipeline 99894eaa695a872f721dafb51ae839ab https://www.encodeproject.org/files/ENCFF451YVL/@@download/ENCFF451YVL.bam released s3://encode-public/2016/12/06/38423af3-ad39-427f-83a8-b11b09c6c03c/ENCFF451YVL.bam ENCODE3 hg19 archived ENCFF840JEZ bam bam unfiltered alignments GRCh38 ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF826QRE/, /files/ENCFF422CWQ/ 4322082619 ENCODE Processing Pipeline 258f7b3a4835e03024575c2e05ea0e02 https://www.encodeproject.org/files/ENCFF840JEZ/@@download/ENCFF840JEZ.bam released s3://encode-public/2020/06/03/670812da-2878-4960-aefb-b4da773bf4c1/ENCFF840JEZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF837HUY bam bam alignments GRCh38 ENCSR236MWZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF826QRE/, /files/ENCFF422CWQ/ 3532897854 ENCODE Processing Pipeline 50abbe0cfcf13206655da357ec4945ad https://www.encodeproject.org/files/ENCFF837HUY/@@download/ENCFF837HUY.bam released s3://encode-public/2020/06/03/ae17c611-d48e-4492-b822-369fb58a3780/ENCFF837HUY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF949OOJ bam bam alignments hg19 ENCSR356PFJ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 33 /files/ENCFF660RGN/ 451263410 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alignments hg19 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 101 /files/ENCFF938VAO/, /files/ENCFF778ZBR/, /files/ENCFF807MUK/, /files/ENCFF779IXW/, /files/ENCFF465DRO/, /files/ENCFF960OWY/, /files/ENCFF196VWV/ 11229561899 ENCODE Processing Pipeline a593000d045c0b10735d340e84da6bb6 https://www.encodeproject.org/files/ENCFF320FQJ/@@download/ENCFF320FQJ.bam released s3://encode-public/2017/07/14/1481da0d-6468-412d-bf12-d8862f651548/ENCFF320FQJ.bam ENCODE3 hg19 archived ENCFF368HMQ bam bam alignments GRCh38 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 101 /files/ENCFF938VAO/, /files/ENCFF643CGH/, /files/ENCFF778ZBR/, /files/ENCFF779IXW/, /files/ENCFF465DRO/, /files/ENCFF960OWY/, /files/ENCFF196VWV/ 11237362278 ENCODE Processing Pipeline 44f0c7ec9b40e531ee384f6b3358c63d https://www.encodeproject.org/files/ENCFF368HMQ/@@download/ENCFF368HMQ.bam released s3://encode-public/2017/07/14/0e7c946a-57b2-4091-8acd-62d8119ca350/ENCFF368HMQ.bam ENCODE3 GRCh38 archived ENCFF815WGN bam bam unfiltered alignments GRCh38 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 101 /files/ENCFF736EKG/, /files/ENCFF643CGH/, /files/ENCFF938ITQ/, /files/ENCFF613BNV/, /files/ENCFF299OEP/, /files/ENCFF279BJH/, /files/ENCFF879OFM/ 23127989163 ENCODE Processing Pipeline 08b3ba8a45ffd599c7670b1b9855e921 https://www.encodeproject.org/files/ENCFF815WGN/@@download/ENCFF815WGN.bam released s3://encode-public/2017/07/19/9796fbd3-ee0f-4801-b237-46d1d940e071/ENCFF815WGN.bam ENCODE3 GRCh38 archived ENCFF433NFZ bam bam alignments GRCh38 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 101 /files/ENCFF736EKG/, /files/ENCFF643CGH/, /files/ENCFF938ITQ/, /files/ENCFF613BNV/, /files/ENCFF299OEP/, /files/ENCFF279BJH/, /files/ENCFF879OFM/ 9579270503 ENCODE Processing Pipeline 1b00bf62444bc24f0ad48b633996b1af https://www.encodeproject.org/files/ENCFF433NFZ/@@download/ENCFF433NFZ.bam released s3://encode-public/2017/07/19/18bf9b65-92ff-4853-9231-a77900cfdc78/ENCFF433NFZ.bam ENCODE3 GRCh38 archived ENCFF679VSD bam bam unfiltered alignments hg19 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 101 /files/ENCFF736EKG/, /files/ENCFF938ITQ/, /files/ENCFF807MUK/, /files/ENCFF613BNV/, /files/ENCFF299OEP/, /files/ENCFF279BJH/, /files/ENCFF879OFM/ 23047121283 ENCODE Processing Pipeline 520439d25b821099d34c098d9cdef983 https://www.encodeproject.org/files/ENCFF679VSD/@@download/ENCFF679VSD.bam released s3://encode-public/2017/07/19/613571ec-e8f5-4121-bafd-6f84e8146ce2/ENCFF679VSD.bam ENCODE3 hg19 archived ENCFF938FXZ bam bam alignments hg19 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 101 /files/ENCFF736EKG/, /files/ENCFF938ITQ/, /files/ENCFF807MUK/, /files/ENCFF613BNV/, /files/ENCFF299OEP/, /files/ENCFF279BJH/, /files/ENCFF879OFM/ 9573281488 ENCODE Processing Pipeline aefadcb80b6777754aa055e885ccc372 https://www.encodeproject.org/files/ENCFF938FXZ/@@download/ENCFF938FXZ.bam released s3://encode-public/2017/07/19/7286a1b0-9068-4df8-9637-0069ab2d9760/ENCFF938FXZ.bam ENCODE3 hg19 archived ENCFF180XXD bam bam unfiltered alignments GRCh38 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF938ITQ/, /files/ENCFF879OFM/, /files/ENCFF279BJH/, /files/ENCFF299OEP/, /files/ENCFF613BNV/, /files/ENCFF736EKG/ 23477566031 ENCODE Processing Pipeline 448e4bc7fbb94afeef52662a385a6fe4 https://www.encodeproject.org/files/ENCFF180XXD/@@download/ENCFF180XXD.bam released s3://encode-public/2020/06/03/000f323f-8d5e-4eb2-b1fd-843eaaf6a5a2/ENCFF180XXD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF905GRP bam bam unfiltered alignments GRCh38 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF465DRO/, /files/ENCFF960OWY/, /files/ENCFF938VAO/, /files/ENCFF779IXW/, /files/ENCFF196VWV/, /files/ENCFF778ZBR/ 23053944083 ENCODE Processing Pipeline d3784c1d12a59715911aa72152a7be5d https://www.encodeproject.org/files/ENCFF905GRP/@@download/ENCFF905GRP.bam released s3://encode-public/2020/06/03/53b2fe21-f6c9-4ce1-b44b-fa030819543c/ENCFF905GRP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF449YZA bam bam alignments GRCh38 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF465DRO/, /files/ENCFF960OWY/, /files/ENCFF938VAO/, /files/ENCFF779IXW/, /files/ENCFF196VWV/, /files/ENCFF778ZBR/ 12107878701 ENCODE Processing Pipeline 427939c559e328d3b9c635b7c6e11a30 https://www.encodeproject.org/files/ENCFF449YZA/@@download/ENCFF449YZA.bam released s3://encode-public/2020/06/03/a46f615e-af82-4df9-8fd8-3a419662ca4f/ENCFF449YZA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF035LKS bam bam alignments GRCh38 ENCSR141ITZ Control ChIP-seq /human-donors/ENCDO000ABB/ EFO:0002713 Panc1 cell line Homo sapiens DNA 2017-07-21 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF938ITQ/, /files/ENCFF879OFM/, /files/ENCFF279BJH/, /files/ENCFF299OEP/, /files/ENCFF613BNV/, /files/ENCFF736EKG/ 10592461611 ENCODE Processing Pipeline 36449a574d02ced1e0b296eb462d32e0 https://www.encodeproject.org/files/ENCFF035LKS/@@download/ENCFF035LKS.bam released s3://encode-public/2020/06/03/393d864c-2710-494e-bd3b-60c00f2bade0/ENCFF035LKS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF220EHL bam bam unfiltered alignments GRCh38 ENCSR636AAQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7157/'], '@type': ['Target', 'Item'], 'name': 'TP53-human', 'label': 'TP53', '@id': '/targets/TP53-human/', 'title': 'TP53 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7d42a35a-5223-4073-9d28-22faca36f88b', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF693TTM/, /files/ENCFF363PFR/ 6501885502 ENCODE Processing Pipeline ffe22be16a983bd3569a47acf73c006d https://www.encodeproject.org/files/ENCFF220EHL/@@download/ENCFF220EHL.bam released s3://encode-public/2020/04/20/3cb377f8-16ba-4c7c-96be-6af4c44144d0/ENCFF220EHL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF693TTM fastq fastq reads ENCSR636AAQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7157/'], '@type': ['Target', 'Item'], 'name': 'TP53-human', 'label': 'TP53', '@id': '/targets/TP53-human/', 'title': 'TP53 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7d42a35a-5223-4073-9d28-22faca36f88b', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF363PFR/ 3084582059 Michael Snyder, Stanford c025988288862f792f8888ef26a1ef95 https://www.encodeproject.org/files/ENCFF693TTM/@@download/ENCFF693TTM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/14/7f81b690-12b9-45e9-b119-3968004f44bd/ENCFF693TTM.fastq.gz mild to moderate bottlenecking ENCFF363PFR fastq fastq reads ENCSR636AAQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7157/'], '@type': ['Target', 'Item'], 'name': 'TP53-human', 'label': 'TP53', '@id': '/targets/TP53-human/', 'title': 'TP53 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7d42a35a-5223-4073-9d28-22faca36f88b', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF693TTM/ 3279199580 Michael Snyder, Stanford 2f9865443f5c3b60524802f43036d180 https://www.encodeproject.org/files/ENCFF363PFR/@@download/ENCFF363PFR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/14/622f85f5-98ca-4a7b-aaad-06ad033f21b2/ENCFF363PFR.fastq.gz mild to moderate bottlenecking ENCFF307MXR bam bam alignments GRCh38 ENCSR636AAQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7157/'], '@type': ['Target', 'Item'], 'name': 'TP53-human', 'label': 'TP53', '@id': '/targets/TP53-human/', 'title': 'TP53 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7d42a35a-5223-4073-9d28-22faca36f88b', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF693TTM/, /files/ENCFF363PFR/ 4544648580 ENCODE Processing Pipeline 7f0d89d0fcee22e3da8eb9691a3b2906 https://www.encodeproject.org/files/ENCFF307MXR/@@download/ENCFF307MXR.bam released s3://encode-public/2020/04/25/aff1cba2-7792-40b3-8d2d-66e71feb315c/ENCFF307MXR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF643EHE fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_1 76 single-ended 1547399890 Bradley Bernstein, Broad b0271418c624988fffc5d2275b1da2d9 SRA:SRR5331311 https://www.encodeproject.org/files/ENCFF643EHE/@@download/ENCFF643EHE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/28/64098692-6235-44ba-88f0-3972e0560489/ENCFF643EHE.fastq.gz ENCFF451IDT fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_2 76 single-ended 1589124423 Bradley Bernstein, Broad 963fea92ea6f8218194a193288e5d4ef SRA:SRR5331307 https://www.encodeproject.org/files/ENCFF451IDT/@@download/ENCFF451IDT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/28/d3d380cb-c782-4d6a-b909-60c057128f64/ENCFF451IDT.fastq.gz ENCFF015ZEK fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 2 2_1 76 single-ended 1711956611 Bradley Bernstein, Broad dc1148dde83c9f228d00a8da81f83a75 SRA:SRR5331310 https://www.encodeproject.org/files/ENCFF015ZEK/@@download/ENCFF015ZEK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/28/0db01da6-170c-45f2-a387-5e068ba5c75e/ENCFF015ZEK.fastq.gz ENCFF826DOK bam bam unfiltered alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF451IDT/, /files/ENCFF643CGH/, /files/ENCFF643EHE/ 3625003384 ENCODE Processing Pipeline 5748f7d96d21a9c0bc8b221d373707e4 https://www.encodeproject.org/files/ENCFF826DOK/@@download/ENCFF826DOK.bam released s3://encode-public/2016/08/09/0ec89076-725a-41a4-b20f-ca5084b53c0f/ENCFF826DOK.bam ENCODE3 GRCh38 archived ENCFF579QXQ bam bam unfiltered alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF015ZEK/ 2067908188 ENCODE Processing Pipeline f0d11f66e11ffe9272c2f78285e28c84 https://www.encodeproject.org/files/ENCFF579QXQ/@@download/ENCFF579QXQ.bam released s3://encode-public/2016/08/09/e4e6bf51-7ae8-44ec-a066-faf61af55900/ENCFF579QXQ.bam ENCODE3 GRCh38 archived ENCFF401XXH bam bam alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF015ZEK/ 1728999501 ENCODE Processing Pipeline eb1e351ddc344f7c86d5ff4ee0cb8ad3 https://www.encodeproject.org/files/ENCFF401XXH/@@download/ENCFF401XXH.bam released s3://encode-public/2016/08/09/3118c0d7-0341-4251-bffd-8099d434037b/ENCFF401XXH.bam ENCODE3 GRCh38 archived ENCFF142VHH bam bam alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF451IDT/, /files/ENCFF643CGH/, /files/ENCFF643EHE/ 3006890874 ENCODE Processing Pipeline f11b30aefbbe486e09def22988971a47 https://www.encodeproject.org/files/ENCFF142VHH/@@download/ENCFF142VHH.bam released s3://encode-public/2016/08/09/77b0c957-e586-4278-8af1-b6d35d7ba71c/ENCFF142VHH.bam ENCODE3 GRCh38 archived ENCFF372FJD bam bam unfiltered alignments hg19 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF015ZEK/ 2064466461 ENCODE Processing Pipeline 88c6460fafdfe74d1c927d4742ae88ea https://www.encodeproject.org/files/ENCFF372FJD/@@download/ENCFF372FJD.bam released s3://encode-public/2016/11/05/e64fa48e-c665-4ec6-9e60-2ba3ddf92dfc/ENCFF372FJD.bam ENCODE3 hg19 archived ENCFF475NNK bam bam unfiltered alignments hg19 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF451IDT/, /files/ENCFF807MUK/, /files/ENCFF643EHE/ 3620261895 ENCODE Processing Pipeline 79ee079d6728c0042bfb47a6be4ccd07 https://www.encodeproject.org/files/ENCFF475NNK/@@download/ENCFF475NNK.bam released s3://encode-public/2016/11/05/5e99fd26-18ff-40c2-af07-e81492d3e26c/ENCFF475NNK.bam ENCODE3 hg19 archived ENCFF620EZL bam bam alignments hg19 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF015ZEK/ 1723464373 ENCODE Processing Pipeline 96038aa88e2dd3ec90f54b8c8b62cda7 https://www.encodeproject.org/files/ENCFF620EZL/@@download/ENCFF620EZL.bam released s3://encode-public/2016/11/05/0cfd7ae9-cdc0-477b-a306-5c2303da41ba/ENCFF620EZL.bam ENCODE3 hg19 archived ENCFF602SNK bam bam alignments hg19 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF451IDT/, /files/ENCFF807MUK/, /files/ENCFF643EHE/ 2997552405 ENCODE Processing Pipeline f28d224bf29d1de088c0b5f9b034d515 https://www.encodeproject.org/files/ENCFF602SNK/@@download/ENCFF602SNK.bam released s3://encode-public/2016/11/05/0ae5d4fd-9e94-4073-9f0d-7e604fa4aee4/ENCFF602SNK.bam ENCODE3 hg19 archived ENCFF621LOE fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 4 4_1 76 single-ended 751623333 Bradley Bernstein, Broad cb4916a71750f29543c7504a0bc6cd78 SRA:SRR5331308 https://www.encodeproject.org/files/ENCFF621LOE/@@download/ENCFF621LOE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/ae7f3595-59dc-417b-8b95-a5925fcd0224/ENCFF621LOE.fastq.gz ENCFF904LCW fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 4 4_1 76 single-ended 825179714 Bradley Bernstein, Broad 6c65a0cd3a0797e628e20450fa616e4f SRA:SRR5331309 https://www.encodeproject.org/files/ENCFF904LCW/@@download/ENCFF904LCW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/00f5d5e7-b4f1-45f7-ac3b-82ec921d1149/ENCFF904LCW.fastq.gz ENCFF633XLI fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_3 76 single-ended 1106622386 Bradley Bernstein, Broad bab591f8fe7d621f5d4dad70db9cf7ca SRA:SRR5331305 https://www.encodeproject.org/files/ENCFF633XLI/@@download/ENCFF633XLI.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2017/01/24/cf15049a-e32f-4df5-8128-01e284b374d1/ENCFF633XLI.fastq.gz ENCFF989DCH fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_3 76 single-ended 805806842 Bradley Bernstein, Broad 9324d824c0c30d5de9c18413b11d3c16 SRA:SRR5331306 https://www.encodeproject.org/files/ENCFF989DCH/@@download/ENCFF989DCH.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2017/01/24/865a233b-632a-46c7-8211-4486f951315e/ENCFF989DCH.fastq.gz ENCFF206LDI fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 3 3_2 76 single-ended 591867654 Bradley Bernstein, Broad aff92d4faba9894af6c9be50df505785 SRA:SRR5331316 https://www.encodeproject.org/files/ENCFF206LDI/@@download/ENCFF206LDI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/c71228a9-799a-4a26-9942-31defeb5bb53/ENCFF206LDI.fastq.gz ENCFF277ALN fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 3 3_2 76 single-ended 550782532 Bradley Bernstein, Broad ba852068a31bd1e8ce8a1ce4e670571b SRA:SRR5331317 https://www.encodeproject.org/files/ENCFF277ALN/@@download/ENCFF277ALN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/7336d9dd-3a2e-4b35-b561-beabaa1a6c3b/ENCFF277ALN.fastq.gz ENCFF397HVL fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 4 4_2 76 single-ended 931550601 Bradley Bernstein, Broad a44322b30eb337695da6aadf9c8cfd38 SRA:SRR5331314 https://www.encodeproject.org/files/ENCFF397HVL/@@download/ENCFF397HVL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/9bede1ab-b768-4c38-af1a-a53cc306344b/ENCFF397HVL.fastq.gz ENCFF778USH fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 3 3_1 76 single-ended 708320193 Bradley Bernstein, Broad a240599a659e3ff943494f3765d687fe SRA:SRR5331312 https://www.encodeproject.org/files/ENCFF778USH/@@download/ENCFF778USH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/96e79fef-4361-42d3-8a69-8713ade4ebcb/ENCFF778USH.fastq.gz ENCFF424MMP fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 4 4_2 76 single-ended 914735595 Bradley Bernstein, Broad 93f82f0ce1e4293979f18240a00cbd57 SRA:SRR5331315 https://www.encodeproject.org/files/ENCFF424MMP/@@download/ENCFF424MMP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/80e45281-d1b1-4d49-a352-4a8aea0997b8/ENCFF424MMP.fastq.gz ENCFF594FBL fastq fastq reads ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 3 3_1 76 single-ended 797798774 Bradley Bernstein, Broad 5fa3b282f67de8f48df144ab1c23ec46 SRA:SRR5331313 https://www.encodeproject.org/files/ENCFF594FBL/@@download/ENCFF594FBL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/891817a2-a491-4652-9aff-a9cd9b74cb06/ENCFF594FBL.fastq.gz ENCFF602DHU bam bam unfiltered alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643EHE/, /files/ENCFF110MCL/, /files/ENCFF451IDT/ 3671196942 ENCODE Processing Pipeline 06559332c0cf835c00428961d356a02d https://www.encodeproject.org/files/ENCFF602DHU/@@download/ENCFF602DHU.bam released s3://encode-public/2020/08/20/be30f41d-ed9f-456e-888d-3c7209dfa930/ENCFF602DHU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF034XBB bam bam unfiltered alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 4 4_1, 4_2 76 /files/ENCFF904LCW/, /files/ENCFF397HVL/, /files/ENCFF424MMP/, /files/ENCFF110MCL/, /files/ENCFF621LOE/ 3364768484 ENCODE Processing Pipeline 5354cfb967856bcd1f1fba6b75302aec https://www.encodeproject.org/files/ENCFF034XBB/@@download/ENCFF034XBB.bam released s3://encode-public/2020/08/20/c5f69f32-4d59-47d0-8a1d-55d0ed92da96/ENCFF034XBB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF994WVU bam bam alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF206LDI/, /files/ENCFF778USH/, /files/ENCFF594FBL/, /files/ENCFF277ALN/, /files/ENCFF110MCL/ 2065038815 ENCODE Processing Pipeline ff306cef3a1d651a0e93cf7393d1f9e1 https://www.encodeproject.org/files/ENCFF994WVU/@@download/ENCFF994WVU.bam released s3://encode-public/2020/08/20/da52d497-ac65-4363-8962-4c1d0c516f6a/ENCFF994WVU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF099BWO bam bam unfiltered alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 2 2_1 76 /files/ENCFF015ZEK/, /files/ENCFF110MCL/ 2096264426 ENCODE Processing Pipeline 2da5dc476f0042aa0fda88495b5e6895 https://www.encodeproject.org/files/ENCFF099BWO/@@download/ENCFF099BWO.bam released s3://encode-public/2020/08/20/d315ed13-be5b-4a11-94dd-4a6c4d5fc112/ENCFF099BWO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF922IIG bam bam unfiltered alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF206LDI/, /files/ENCFF778USH/, /files/ENCFF594FBL/, /files/ENCFF277ALN/, /files/ENCFF110MCL/ 2526631034 ENCODE Processing Pipeline da9b69709325a06f52d0dcf54a618b3d https://www.encodeproject.org/files/ENCFF922IIG/@@download/ENCFF922IIG.bam released s3://encode-public/2020/08/20/8ee6f5f1-e752-4775-b785-28be7d02a24d/ENCFF922IIG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF748NUK bam bam alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF643EHE/, /files/ENCFF110MCL/, /files/ENCFF451IDT/ 3079323640 ENCODE Processing Pipeline c5af90f7d2ad1dfa6d36a8cfdcede844 https://www.encodeproject.org/files/ENCFF748NUK/@@download/ENCFF748NUK.bam released s3://encode-public/2020/08/20/1a82c86d-115a-4598-a3e6-1cf58f75cd8e/ENCFF748NUK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF834ZDP bam bam alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 2 2_1 76 /files/ENCFF015ZEK/, /files/ENCFF110MCL/ 1772216135 ENCODE Processing Pipeline 48f92155fc2fe47757a83b3e8ca138b1 https://www.encodeproject.org/files/ENCFF834ZDP/@@download/ENCFF834ZDP.bam released s3://encode-public/2020/08/20/17e62816-641b-44ca-82c6-0f07e950b4f2/ENCFF834ZDP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF556URJ bam bam alignments GRCh38 ENCSR142REC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2016-10-27 ENCODE 200-600 4 4_1, 4_2 76 /files/ENCFF904LCW/, /files/ENCFF397HVL/, /files/ENCFF424MMP/, /files/ENCFF110MCL/, /files/ENCFF621LOE/ 2825742045 ENCODE Processing Pipeline 59b658883ab961a6a1f2d9a3eecf1d52 https://www.encodeproject.org/files/ENCFF556URJ/@@download/ENCFF556URJ.bam released s3://encode-public/2020/08/20/88aa8676-113e-4f10-8419-293ce7b077d6/ENCFF556URJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF547QSE fastq fastq reads ENCSR499QIO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201516/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN4-human', 'label': 'ZSCAN4', '@id': '/targets/ZSCAN4-human/', 'title': 'ZSCAN4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '917b3d79-a1ca-4ad2-9a67-9db73d5ddb0f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF804THN/ 3030464785 Michael Snyder, Stanford 573d3f17cedb8972c00e9663ed1a7ff7 SRA:SRR5111681 https://www.encodeproject.org/files/ENCFF547QSE/@@download/ENCFF547QSE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/5a37d503-041f-422e-93ea-bbcee9e16ad4/ENCFF547QSE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF804THN fastq fastq reads ENCSR499QIO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201516/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN4-human', 'label': 'ZSCAN4', '@id': '/targets/ZSCAN4-human/', 'title': 'ZSCAN4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '917b3d79-a1ca-4ad2-9a67-9db73d5ddb0f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF547QSE/ 3087256806 Michael Snyder, Stanford 9105e03e9670f357a057090e8f1b3b7f SRA:SRR5111681 https://www.encodeproject.org/files/ENCFF804THN/@@download/ENCFF804THN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/977fe8fd-c5e6-42ef-8bd0-0b9bc3708574/ENCFF804THN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF739DIC bam bam unfiltered alignments hg19 ENCSR499QIO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201516/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN4-human', 'label': 'ZSCAN4', '@id': '/targets/ZSCAN4-human/', 'title': 'ZSCAN4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '917b3d79-a1ca-4ad2-9a67-9db73d5ddb0f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF804THN/, /files/ENCFF807MUK/, /files/ENCFF547QSE/ 6129149770 ENCODE Processing Pipeline cdc875c72fa167447271a264b1c8c202 https://www.encodeproject.org/files/ENCFF739DIC/@@download/ENCFF739DIC.bam released s3://encode-public/2016/09/11/0b28bc70-01ef-4c91-87ed-cd05477d4264/ENCFF739DIC.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF120BDS bam bam unfiltered alignments GRCh38 ENCSR499QIO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': 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insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201516/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN4-human', 'label': 'ZSCAN4', '@id': '/targets/ZSCAN4-human/', 'title': 'ZSCAN4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '917b3d79-a1ca-4ad2-9a67-9db73d5ddb0f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF804THN/, /files/ENCFF807MUK/, /files/ENCFF547QSE/ 5214996824 ENCODE Processing Pipeline c26e8bcb9392bb697e717ccfba90badf https://www.encodeproject.org/files/ENCFF125RDY/@@download/ENCFF125RDY.bam released s3://encode-public/2016/09/11/88d9ec0c-f85b-4353-9597-879832f95883/ENCFF125RDY.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF004ZOO bam bam alignments GRCh38 ENCSR499QIO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201516/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN4-human', 'label': 'ZSCAN4', '@id': '/targets/ZSCAN4-human/', 'title': 'ZSCAN4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '917b3d79-a1ca-4ad2-9a67-9db73d5ddb0f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF804THN/, /files/ENCFF643CGH/, /files/ENCFF547QSE/ 5216144809 ENCODE Processing Pipeline 64fb0e1a506f4ae177e804d32b9edab1 https://www.encodeproject.org/files/ENCFF004ZOO/@@download/ENCFF004ZOO.bam released s3://encode-public/2016/09/11/86d246f3-a03e-4336-8c3a-aec70cf171f6/ENCFF004ZOO.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF190AZK bam bam alignments GRCh38 ENCSR499QIO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/201516/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN4-human', 'label': 'ZSCAN4', '@id': '/targets/ZSCAN4-human/', 'title': 'ZSCAN4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '917b3d79-a1ca-4ad2-9a67-9db73d5ddb0f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF547QSE/, /files/ENCFF804THN/ 5263410446 ENCODE Processing Pipeline e2a37db360844a3e3fb864abb39b9d63 https://www.encodeproject.org/files/ENCFF190AZK/@@download/ENCFF190AZK.bam released s3://encode-public/2020/06/02/91ffc766-c88a-4bac-9663-baf02023ace5/ENCFF190AZK.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF782QEN bam bam unfiltered alignments GRCh38 ENCSR499QIO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-719'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 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Stanford 6834afe0351b4d58599b0d77ab6cdc6d SRA:SRR6212657 https://www.encodeproject.org/files/ENCFF992BQY/@@download/ENCFF992BQY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/5160e6fa-d67f-442f-abdd-56267cc36545/ENCFF992BQY.fastq.gz mild to moderate bottlenecking ENCFF709DOA fastq fastq reads ENCSR004FGW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF992BQY/ 3829915399 Michael Snyder, Stanford a2790330c878d14af299079e74d57c59 SRA:SRR6212657 https://www.encodeproject.org/files/ENCFF709DOA/@@download/ENCFF709DOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/06f22412-a7a8-4716-8eda-d84ce4d2e86c/ENCFF709DOA.fastq.gz mild to moderate bottlenecking ENCFF470YTM bam bam unfiltered alignments hg19 ENCSR004FGW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 2 2_1 101 /files/ENCFF709DOA/, /files/ENCFF807MUK/, /files/ENCFF992BQY/ 6657055542 ENCODE Processing Pipeline a36a1f692fd887eb8f91f68565e426d4 https://www.encodeproject.org/files/ENCFF470YTM/@@download/ENCFF470YTM.bam released s3://encode-public/2016/12/10/2fc461b5-46bb-41c3-97e3-365263fcd1b8/ENCFF470YTM.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF940ZHR bam bam alignments hg19 ENCSR004FGW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 2 2_1 101 /files/ENCFF709DOA/, /files/ENCFF807MUK/, /files/ENCFF992BQY/ 5010335635 ENCODE Processing Pipeline b44eca9b877da9bf24f34bbce85b3ef8 https://www.encodeproject.org/files/ENCFF940ZHR/@@download/ENCFF940ZHR.bam released s3://encode-public/2016/12/10/874927ec-1886-480c-8b2f-e3d52cd86887/ENCFF940ZHR.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF702ZGG bam bam unfiltered alignments GRCh38 ENCSR004FGW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 2 2_1 101 /files/ENCFF709DOA/, /files/ENCFF643CGH/, /files/ENCFF992BQY/ 6662211779 ENCODE Processing Pipeline 6e609befe82a52d96c98fdd31d607b62 https://www.encodeproject.org/files/ENCFF702ZGG/@@download/ENCFF702ZGG.bam released s3://encode-public/2016/12/10/7d8a54be-b077-43cf-a183-0d1458997f38/ENCFF702ZGG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF987CPP bam bam alignments GRCh38 ENCSR004FGW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 2 2_1 101 /files/ENCFF709DOA/, /files/ENCFF643CGH/, /files/ENCFF992BQY/ 5017882546 ENCODE Processing Pipeline 10161a2367733bacc66626f096e4f71e https://www.encodeproject.org/files/ENCFF987CPP/@@download/ENCFF987CPP.bam released s3://encode-public/2016/12/10/c28d57ab-502f-4cb7-99d7-858f05798328/ENCFF987CPP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF804BXE bam bam unfiltered alignments GRCh38 ENCSR004FGW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF992BQY/, /files/ENCFF709DOA/ 6669916887 ENCODE Processing Pipeline 7a1f8cc6a00d978c3065bc781f94a1e7 https://www.encodeproject.org/files/ENCFF804BXE/@@download/ENCFF804BXE.bam released s3://encode-public/2020/06/03/b2ecf5be-68c4-4833-9a96-81e12e002948/ENCFF804BXE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF899HAD bam bam alignments GRCh38 ENCSR004FGW Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF992BQY/, /files/ENCFF709DOA/ 4909153066 ENCODE Processing Pipeline c79230aea07fd3d3d31060c5af750f72 https://www.encodeproject.org/files/ENCFF899HAD/@@download/ENCFF899HAD.bam released s3://encode-public/2020/06/03/ead30377-a813-422c-bba3-123486651dcd/ENCFF899HAD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF827FQZ fastq fastq reads ENCSR318AGT Control ChIP-seq /fly-donors/ENCDO068HWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43151/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mγ-HLH-dmelanogaster', 'label': 'E(spl)mγ-HLH', '@id': '/targets/E(spl)m%CE%B3-HLH-dmelanogaster/', 'title': 'E(spl)mγ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0f247ce2-b860-4472-b8a5-e0d033a4bc88', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1083849162 Kevin White, UChicago 002d68016b35c06013a1ee4c264568e1 https://www.encodeproject.org/files/ENCFF827FQZ/@@download/ENCFF827FQZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/ea15461a-d67c-4922-831e-4088c41eb985/ENCFF827FQZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF345FVS bam bam alignments dm3 ENCSR318AGT Control ChIP-seq /fly-donors/ENCDO068HWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43151/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mγ-HLH-dmelanogaster', 'label': 'E(spl)mγ-HLH', '@id': '/targets/E(spl)m%CE%B3-HLH-dmelanogaster/', 'title': 'E(spl)mγ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0f247ce2-b860-4472-b8a5-e0d033a4bc88', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF827FQZ/, /files/ENCFF059UHX/ 1319045769 Kevin White, UChicago c3f4ff4d0c7aad31ea6495d1cbe56ff4 https://www.encodeproject.org/files/ENCFF345FVS/@@download/ENCFF345FVS.bam released s3://encode-public/2016/08/03/01b95c42-a808-4766-826f-d90d51b88825/ENCFF345FVS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF677XJI bam bam alignments dm6 ENCSR318AGT Control ChIP-seq /fly-donors/ENCDO068HWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43151/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mγ-HLH-dmelanogaster', 'label': 'E(spl)mγ-HLH', '@id': '/targets/E(spl)m%CE%B3-HLH-dmelanogaster/', 'title': 'E(spl)mγ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0f247ce2-b860-4472-b8a5-e0d033a4bc88', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF827FQZ/, /files/ENCFF479RCH/ 1313718741 Kevin White, UChicago f1b90b977962bf084276eeb5fe5fd27b https://www.encodeproject.org/files/ENCFF677XJI/@@download/ENCFF677XJI.bam released s3://encode-public/2016/08/04/ea68608d-d932-40e5-9ab6-08611dedb418/ENCFF677XJI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF869IIN bigWig bigWig signal of unique reads dm3 ENCSR318AGT Control ChIP-seq /fly-donors/ENCDO068HWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43151/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mγ-HLH-dmelanogaster', 'label': 'E(spl)mγ-HLH', '@id': '/targets/E(spl)m%CE%B3-HLH-dmelanogaster/', 'title': 'E(spl)mγ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0f247ce2-b860-4472-b8a5-e0d033a4bc88', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF345FVS/ 15386644 Kevin White, UChicago 8d8bd72c6b5950c686804a3b6483f778 https://www.encodeproject.org/files/ENCFF869IIN/@@download/ENCFF869IIN.bigWig released s3://encode-public/2016/08/04/472de41b-7cdd-4510-9f20-e9021b8ea5d6/ENCFF869IIN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF527LTG bigWig bigWig read-depth normalized signal dm3 ENCSR318AGT Control ChIP-seq /fly-donors/ENCDO068HWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43151/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mγ-HLH-dmelanogaster', 'label': 'E(spl)mγ-HLH', '@id': '/targets/E(spl)m%CE%B3-HLH-dmelanogaster/', 'title': 'E(spl)mγ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0f247ce2-b860-4472-b8a5-e0d033a4bc88', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF345FVS/ 15429036 Kevin White, UChicago bb629b544d2e6bc0796fab771b6bd607 https://www.encodeproject.org/files/ENCFF527LTG/@@download/ENCFF527LTG.bigWig released s3://encode-public/2016/08/04/a4870213-3691-46cb-b237-9b1ec5a86bd3/ENCFF527LTG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF531KID bigWig bigWig read-depth normalized signal dm6 ENCSR318AGT Control ChIP-seq /fly-donors/ENCDO068HWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43151/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mγ-HLH-dmelanogaster', 'label': 'E(spl)mγ-HLH', '@id': '/targets/E(spl)m%CE%B3-HLH-dmelanogaster/', 'title': 'E(spl)mγ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0f247ce2-b860-4472-b8a5-e0d033a4bc88', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF677XJI/ 17510664 Kevin White, UChicago eeea4992770b767051c1d68c1fbc531f https://www.encodeproject.org/files/ENCFF531KID/@@download/ENCFF531KID.bigWig released s3://encode-public/2016/08/04/72fa8341-a40c-4010-9733-a397c97b1f6f/ENCFF531KID.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF415LOB bigWig bigWig signal of unique reads dm6 ENCSR318AGT Control ChIP-seq /fly-donors/ENCDO068HWO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43151/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mγ-HLH-dmelanogaster', 'label': 'E(spl)mγ-HLH', '@id': '/targets/E(spl)m%CE%B3-HLH-dmelanogaster/', 'title': 'E(spl)mγ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0f247ce2-b860-4472-b8a5-e0d033a4bc88', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF677XJI/ 17443873 Kevin White, UChicago c8ed9e8d95e78b608547dd02377b81d0 https://www.encodeproject.org/files/ENCFF415LOB/@@download/ENCFF415LOB.bigWig released s3://encode-public/2016/08/04/6ab8a9d8-4d74-4f8e-9b30-3dd70441ed89/ENCFF415LOB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF240AEQ fastq fastq reads ENCSR073DRW Control ChIP-seq /fly-donors/ENCDO385CHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32941/'], '@type': ['Target', 'Item'], 'name': 'CoRest-dmelanogaster', 'label': 'CoRest', '@id': '/targets/CoRest-dmelanogaster/', 'title': 'CoRest (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '385d3212-a2e3-42e0-aeb2-13b614f0ac2f', 'status': 'released'} dm3 X 19416059 19424937 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 524418924 Kevin White, UChicago 697bc72a5c03504664aff6e15190ac92 https://www.encodeproject.org/files/ENCFF240AEQ/@@download/ENCFF240AEQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/103036fc-84ec-4524-9423-9143bbd33321/ENCFF240AEQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF339EOZ bam bam alignments dm6 ENCSR073DRW Control ChIP-seq /fly-donors/ENCDO385CHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32941/'], '@type': ['Target', 'Item'], 'name': 'CoRest-dmelanogaster', 'label': 'CoRest', '@id': '/targets/CoRest-dmelanogaster/', 'title': 'CoRest (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '385d3212-a2e3-42e0-aeb2-13b614f0ac2f', 'status': 'released'} dm3 X 19416059 19424937 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF240AEQ/, /files/ENCFF479RCH/ 691291997 Kevin White, UChicago 9aa7d9f9653e34a43b1e4584b3c29c90 https://www.encodeproject.org/files/ENCFF339EOZ/@@download/ENCFF339EOZ.bam released s3://encode-public/2018/12/07/97a8a6f1-0606-474f-834d-b841bc3aa547/ENCFF339EOZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF134IKM bigWig bigWig signal of unique reads dm6 ENCSR073DRW Control ChIP-seq /fly-donors/ENCDO385CHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32941/'], '@type': ['Target', 'Item'], 'name': 'CoRest-dmelanogaster', 'label': 'CoRest', '@id': '/targets/CoRest-dmelanogaster/', 'title': 'CoRest (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '385d3212-a2e3-42e0-aeb2-13b614f0ac2f', 'status': 'released'} dm3 X 19416059 19424937 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF339EOZ/ 17615020 Kevin White, UChicago 8a61e4733f177f126d0dd5be84d3083a https://www.encodeproject.org/files/ENCFF134IKM/@@download/ENCFF134IKM.bigWig released s3://encode-public/2018/12/10/fed351f7-53e0-4be5-8513-6b454dfbce3d/ENCFF134IKM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF944ZGZ bigWig bigWig read-depth normalized signal dm6 ENCSR073DRW Control ChIP-seq /fly-donors/ENCDO385CHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32941/'], '@type': ['Target', 'Item'], 'name': 'CoRest-dmelanogaster', 'label': 'CoRest', '@id': '/targets/CoRest-dmelanogaster/', 'title': 'CoRest (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '385d3212-a2e3-42e0-aeb2-13b614f0ac2f', 'status': 'released'} dm3 X 19416059 19424937 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF339EOZ/ 17672289 Kevin White, UChicago b3af46b0854a244d189c3984dfb3ee82 https://www.encodeproject.org/files/ENCFF944ZGZ/@@download/ENCFF944ZGZ.bigWig released s3://encode-public/2018/12/10/510d7215-c644-4421-b503-79b565ba2265/ENCFF944ZGZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF559JAA fastq fastq reads ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF215CIJ/ 2556618735 Richard Myers, HAIB f8f5b4ec8bd324f8f78cdbc3abd780fe SRA:SRR6214085 https://www.encodeproject.org/files/ENCFF559JAA/@@download/ENCFF559JAA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/ad2009b1-8aa8-4ee0-9f02-cea161f09386/ENCFF559JAA.fastq.gz ENCFF215CIJ fastq fastq reads ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF559JAA/ 2441527590 Richard Myers, HAIB cc28b8c15fd2fc5c158019feb2c617f1 SRA:SRR6214085 https://www.encodeproject.org/files/ENCFF215CIJ/@@download/ENCFF215CIJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/3593c808-c094-48cc-8326-830ed66edbc9/ENCFF215CIJ.fastq.gz ENCFF948WJL bam bam unfiltered alignments hg19 ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF559JAA/, /files/ENCFF807MUK/, /files/ENCFF215CIJ/ 5982680737 ENCODE Processing Pipeline 15b5fae2c032089acd9a8216241117e5 https://www.encodeproject.org/files/ENCFF948WJL/@@download/ENCFF948WJL.bam released s3://encode-public/2016/11/08/33c5efc1-61fa-4492-9060-019fddeb9007/ENCFF948WJL.bam ENCODE3 hg19 archived ENCFF374XNE bam bam alignments hg19 ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF559JAA/, /files/ENCFF807MUK/, /files/ENCFF215CIJ/ 4181322755 ENCODE Processing Pipeline 54cb2a4a921c9aa31ac1c25ad7cc59e3 https://www.encodeproject.org/files/ENCFF374XNE/@@download/ENCFF374XNE.bam released s3://encode-public/2016/11/08/d5022aac-a542-481e-b7ec-b46d4b56d6d2/ENCFF374XNE.bam ENCODE3 hg19 archived ENCFF326QJB bam bam unfiltered alignments GRCh38 ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF559JAA/, /files/ENCFF215CIJ/, /files/ENCFF643CGH/ 6008467281 ENCODE Processing Pipeline 44e9ddd119ac5ca317aad68c421e9c93 https://www.encodeproject.org/files/ENCFF326QJB/@@download/ENCFF326QJB.bam released s3://encode-public/2016/12/06/eceaab56-c6d7-4c8f-aa46-a776d5ef7f5d/ENCFF326QJB.bam ENCODE3 GRCh38 archived ENCFF793QZP bam bam alignments GRCh38 ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF559JAA/, /files/ENCFF215CIJ/, /files/ENCFF643CGH/ 4184125691 ENCODE Processing Pipeline 8a8861507d923f0b3844b959ea293dd9 https://www.encodeproject.org/files/ENCFF793QZP/@@download/ENCFF793QZP.bam released s3://encode-public/2016/12/06/ff697ddb-8bbf-4c6c-940d-39ce447a61f2/ENCFF793QZP.bam ENCODE3 GRCh38 archived ENCFF784MNE bam bam unfiltered alignments GRCh38 ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF559JAA/, /files/ENCFF215CIJ/, /files/ENCFF110MCL/ 5975904201 ENCODE Processing Pipeline d0632daede4a4071a8bfc9a9ac73f811 https://www.encodeproject.org/files/ENCFF784MNE/@@download/ENCFF784MNE.bam released s3://encode-public/2020/10/28/3121c99e-229d-4a98-b1ee-b6cede18416b/ENCFF784MNE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF118RKJ bam bam alignments GRCh38 ENCSR956TLA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF559JAA/, /files/ENCFF215CIJ/, /files/ENCFF110MCL/ 3977775046 ENCODE Processing Pipeline 8a9e38544a59736f6ded6e27b3c57124 https://www.encodeproject.org/files/ENCFF118RKJ/@@download/ENCFF118RKJ.bam released s3://encode-public/2020/10/28/8fea9ddd-74fc-495a-b902-65dc03c27888/ENCFF118RKJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF598GMF fastq fastq reads ENCSR996PHG Control ChIP-seq /fly-donors/ENCDO529KYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45339/'], '@type': ['Target', 'Item'], 'name': 'net-dmelanogaster', 'label': 'net', '@id': '/targets/net-dmelanogaster/', 'title': 'net (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '36daf8d7-362f-4987-820e-a3091fd6b659', 'status': 'released'} dm3 2L 31532 133754 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 729824917 Kevin White, UChicago 854f78a5a40a0ec79e56709c77ae4c5b https://www.encodeproject.org/files/ENCFF598GMF/@@download/ENCFF598GMF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/02/5b3d7d12-34b6-4ffe-9e49-53c0e0baccf9/ENCFF598GMF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF701MAV bam bam alignments dm3 ENCSR996PHG Control ChIP-seq /fly-donors/ENCDO529KYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45339/'], '@type': ['Target', 'Item'], 'name': 'net-dmelanogaster', 'label': 'net', '@id': '/targets/net-dmelanogaster/', 'title': 'net (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '36daf8d7-362f-4987-820e-a3091fd6b659', 'status': 'released'} dm3 2L 31532 133754 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF598GMF/, /files/ENCFF059UHX/ 817336299 Kevin White, UChicago 81d22d58a424fd24197d227743975be1 https://www.encodeproject.org/files/ENCFF701MAV/@@download/ENCFF701MAV.bam released s3://encode-public/2016/08/02/adc1d56b-55bf-4258-a48c-5e7573efb6c2/ENCFF701MAV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF561SDR bam bam alignments dm6 ENCSR996PHG Control ChIP-seq /fly-donors/ENCDO529KYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45339/'], '@type': ['Target', 'Item'], 'name': 'net-dmelanogaster', 'label': 'net', '@id': '/targets/net-dmelanogaster/', 'title': 'net (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '36daf8d7-362f-4987-820e-a3091fd6b659', 'status': 'released'} dm3 2L 31532 133754 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF598GMF/, /files/ENCFF479RCH/ 812690676 Kevin White, UChicago 08e8f11f830619a28c526535959d2811 https://www.encodeproject.org/files/ENCFF561SDR/@@download/ENCFF561SDR.bam released s3://encode-public/2016/08/04/1d1d66c7-d583-46eb-b8c4-02dad7cd3be1/ENCFF561SDR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF850ULZ bigWig bigWig read-depth normalized signal dm3 ENCSR996PHG Control ChIP-seq /fly-donors/ENCDO529KYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45339/'], '@type': ['Target', 'Item'], 'name': 'net-dmelanogaster', 'label': 'net', '@id': '/targets/net-dmelanogaster/', 'title': 'net (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '36daf8d7-362f-4987-820e-a3091fd6b659', 'status': 'released'} dm3 2L 31532 133754 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF701MAV/ 15101002 Kevin White, UChicago bf886970691931a74179611f21bea909 https://www.encodeproject.org/files/ENCFF850ULZ/@@download/ENCFF850ULZ.bigWig released s3://encode-public/2016/08/04/e1fe956a-e146-4d7b-8ed4-fc7912f6b25d/ENCFF850ULZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF774RFT bigWig bigWig signal of unique reads dm3 ENCSR996PHG Control ChIP-seq /fly-donors/ENCDO529KYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45339/'], '@type': ['Target', 'Item'], 'name': 'net-dmelanogaster', 'label': 'net', '@id': '/targets/net-dmelanogaster/', 'title': 'net (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '36daf8d7-362f-4987-820e-a3091fd6b659', 'status': 'released'} dm3 2L 31532 133754 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF701MAV/ 15097373 Kevin White, UChicago a551f17ab269eb81e6243564e66aa789 https://www.encodeproject.org/files/ENCFF774RFT/@@download/ENCFF774RFT.bigWig released s3://encode-public/2016/08/04/0862bc00-f081-45a0-be88-ae042ad6d868/ENCFF774RFT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF751AAR bigWig bigWig read-depth normalized signal dm6 ENCSR996PHG Control ChIP-seq /fly-donors/ENCDO529KYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45339/'], '@type': ['Target', 'Item'], 'name': 'net-dmelanogaster', 'label': 'net', '@id': '/targets/net-dmelanogaster/', 'title': 'net (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '36daf8d7-362f-4987-820e-a3091fd6b659', 'status': 'released'} dm3 2L 31532 133754 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF561SDR/ 17182970 Kevin White, UChicago dd00aa87f5a885386c387a0a8cbe5241 https://www.encodeproject.org/files/ENCFF751AAR/@@download/ENCFF751AAR.bigWig released s3://encode-public/2016/08/04/6aa9e4b7-1dc8-4b72-86ed-a1bd895fe922/ENCFF751AAR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF559LDH bigWig bigWig signal of unique reads dm6 ENCSR996PHG Control ChIP-seq /fly-donors/ENCDO529KYZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/45339/'], '@type': ['Target', 'Item'], 'name': 'net-dmelanogaster', 'label': 'net', '@id': '/targets/net-dmelanogaster/', 'title': 'net (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '36daf8d7-362f-4987-820e-a3091fd6b659', 'status': 'released'} dm3 2L 31532 133754 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF561SDR/ 17161517 Kevin White, UChicago 69005b8205a37fd085a4338d893e1977 https://www.encodeproject.org/files/ENCFF559LDH/@@download/ENCFF559LDH.bigWig released s3://encode-public/2016/08/04/d766711d-6f75-408f-861a-50ab8451d4fe/ENCFF559LDH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF811PYH fastq fastq reads ENCSR209ADM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3516/'], '@type': ['Target', 'Item'], 'name': 'RBPJ-human', 'label': 'RBPJ', '@id': '/targets/RBPJ-human/', 'title': 'RBPJ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '28ea79d1-6c25-4649-bcd9-e3926373c06f', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF360FTF/ 2383144680 Michael Snyder, Stanford 5886ad3c3f407f24fc9cadf0beea04ae SRA:SRR14838016 https://www.encodeproject.org/files/ENCFF811PYH/@@download/ENCFF811PYH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/26/8d1a56cf-4fba-4ca6-956f-c16a1a686d7c/ENCFF811PYH.fastq.gz mild to moderate bottlenecking ENCFF360FTF fastq fastq reads ENCSR209ADM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3516/'], '@type': ['Target', 'Item'], 'name': 'RBPJ-human', 'label': 'RBPJ', '@id': '/targets/RBPJ-human/', 'title': 'RBPJ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '28ea79d1-6c25-4649-bcd9-e3926373c06f', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF811PYH/ 2941862682 Michael Snyder, Stanford eafb05677fc0a5b8541829a00dab40cf SRA:SRR14838016 https://www.encodeproject.org/files/ENCFF360FTF/@@download/ENCFF360FTF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/26/73aab605-e857-4de8-8b32-1c5cdb9f6b12/ENCFF360FTF.fastq.gz mild to moderate bottlenecking ENCFF990PVX fastq fastq reads ENCSR209ADM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3516/'], '@type': ['Target', 'Item'], 'name': 'RBPJ-human', 'label': 'RBPJ', '@id': '/targets/RBPJ-human/', 'title': 'RBPJ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '28ea79d1-6c25-4649-bcd9-e3926373c06f', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF377VDK/ 2654064084 Michael Snyder, Stanford 05fbd9cc7ac07664d3b31a025dd45e9f SRA:SRR14838017 https://www.encodeproject.org/files/ENCFF990PVX/@@download/ENCFF990PVX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/26/2473d41c-3d0c-4131-9f43-a18186a93edb/ENCFF990PVX.fastq.gz mild to moderate bottlenecking ENCFF377VDK fastq fastq reads ENCSR209ADM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3516/'], '@type': ['Target', 'Item'], 'name': 'RBPJ-human', 'label': 'RBPJ', '@id': '/targets/RBPJ-human/', 'title': 'RBPJ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '28ea79d1-6c25-4649-bcd9-e3926373c06f', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF990PVX/ 2230294995 Michael Snyder, Stanford 375f98dc1bc64c5a00adc48feef77027 SRA:SRR14838017 https://www.encodeproject.org/files/ENCFF377VDK/@@download/ENCFF377VDK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/26/bc87e53c-5fb3-4f38-ab2c-ee3c667d212c/ENCFF377VDK.fastq.gz mild to moderate bottlenecking ENCFF716RSK bam bam unfiltered alignments GRCh38 ENCSR209ADM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3516/'], '@type': ['Target', 'Item'], 'name': 'RBPJ-human', 'label': 'RBPJ', '@id': '/targets/RBPJ-human/', 'title': 'RBPJ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '28ea79d1-6c25-4649-bcd9-e3926373c06f', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF811PYH/, /files/ENCFF377VDK/, /files/ENCFF360FTF/, /files/ENCFF990PVX/ 9852395914 ENCODE Processing Pipeline 6f3bc9550758478c3bae9f374bc5631d https://www.encodeproject.org/files/ENCFF716RSK/@@download/ENCFF716RSK.bam released s3://encode-public/2020/05/22/ef450895-4b5a-4117-a537-ba49ae7a48d4/ENCFF716RSK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF348IIN bam bam alignments GRCh38 ENCSR209ADM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3516/'], '@type': ['Target', 'Item'], 'name': 'RBPJ-human', 'label': 'RBPJ', '@id': '/targets/RBPJ-human/', 'title': 'RBPJ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '28ea79d1-6c25-4649-bcd9-e3926373c06f', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF811PYH/, /files/ENCFF377VDK/, /files/ENCFF360FTF/, /files/ENCFF990PVX/ 7180223749 ENCODE Processing Pipeline 76c4913a28d023ef4c35f3aa90819e11 https://www.encodeproject.org/files/ENCFF348IIN/@@download/ENCFF348IIN.bam released s3://encode-public/2020/05/22/d6d74a81-3a78-4e7a-b674-85a914669e6d/ENCFF348IIN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF205LBO fastq fastq reads ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 105520727 Michael Snyder, Stanford e8991b9c7201a53e5f4568fe9e09576e https://www.encodeproject.org/files/ENCFF205LBO/@@download/ENCFF205LBO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/a2893999-731a-419a-8eeb-3280d515a3b5/ENCFF205LBO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF027GNB fastq fastq reads ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 91369530 Michael Snyder, Stanford 0bfd78f040849bbbf9607af3cf2ddbd2 https://www.encodeproject.org/files/ENCFF027GNB/@@download/ENCFF027GNB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/e95b06cd-5310-47a3-93e9-07d8ab7d72d0/ENCFF027GNB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF981GXR bam bam alignments ce10 ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF205LBO/, /files/ENCFF027GNB/, /files/ENCFF987UMF/ 264694857 Kevin White, UChicago 57e68f3f4f932eca92d0396c19c201a2 https://www.encodeproject.org/files/ENCFF981GXR/@@download/ENCFF981GXR.bam released s3://encode-public/2017/04/27/99175b7c-3ed1-4c06-ab00-487d1e1525d0/ENCFF981GXR.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF977FPL bam bam alignments ce11 ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF205LBO/, /files/ENCFF027GNB/, /files/ENCFF586MOL/ 264997966 Kevin White, UChicago d085b9a381cfb42eb0a712458f7a90fa https://www.encodeproject.org/files/ENCFF977FPL/@@download/ENCFF977FPL.bam released s3://encode-public/2017/04/27/c0174f34-465d-4a72-8c7e-40a760aecd39/ENCFF977FPL.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF728IFJ bigWig bigWig read-depth normalized signal ce10 ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF981GXR/ 10068502 Kevin White, UChicago 53d4417c99225a66f8aee31beb38d2cc https://www.encodeproject.org/files/ENCFF728IFJ/@@download/ENCFF728IFJ.bigWig released s3://encode-public/2017/04/29/c2e6e529-4319-4755-bc53-ac476d78e156/ENCFF728IFJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF702CJO bigWig bigWig signal of unique reads ce10 ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF981GXR/ 10090860 Kevin White, UChicago 1dfe025157e03548aee308d1e316d948 https://www.encodeproject.org/files/ENCFF702CJO/@@download/ENCFF702CJO.bigWig released s3://encode-public/2017/04/29/8a6a93bc-72f0-40a5-9609-46abc54b97b8/ENCFF702CJO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF980WFQ bigWig bigWig read-depth normalized signal ce11 ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF977FPL/ 10064774 Kevin White, UChicago a70ce48593c3ecbfbeb7eaeb68dd5bea https://www.encodeproject.org/files/ENCFF980WFQ/@@download/ENCFF980WFQ.bigWig released s3://encode-public/2017/04/29/80934c27-7101-4343-8cde-3224767f1cd7/ENCFF980WFQ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF404JYU bigWig bigWig signal of unique reads ce11 ENCSR698WBS Control ChIP-seq /worm-donors/ENCDO503MZK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179485/'], '@type': ['Target', 'Item'], 'name': 'ceh-22-celegans', 'label': 'ceh-22', '@id': '/targets/ceh-22-celegans/', 'title': 'ceh-22 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1109db44-7711-4e94-a87a-c82bd58848c3', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF977FPL/ 10077638 Kevin White, UChicago 15a8f44031425207e668d150e8d132e2 https://www.encodeproject.org/files/ENCFF404JYU/@@download/ENCFF404JYU.bigWig released s3://encode-public/2017/04/29/b70e7451-47a3-4e1f-ae4c-c6b4fdf6b52d/ENCFF404JYU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF586GNU fastq fastq reads ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF876IGQ/ 2050653329 Michael Snyder, Stanford 10b49db23ff1643aa7a2b24770cbb095 SRA:SRR6213866 https://www.encodeproject.org/files/ENCFF586GNU/@@download/ENCFF586GNU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/390fc77d-d3b6-4107-9d8a-dd52eaa221e7/ENCFF586GNU.fastq.gz ENCFF876IGQ fastq fastq reads ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF586GNU/ 2098189566 Michael Snyder, Stanford 7a0f3420bd6e0570306686bd8b132fcb SRA:SRR6213866 https://www.encodeproject.org/files/ENCFF876IGQ/@@download/ENCFF876IGQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/20bf1730-e2a1-467b-9089-f4e5b2a83e02/ENCFF876IGQ.fastq.gz ENCFF674YAP bam bam unfiltered alignments hg19 ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF876IGQ/, /files/ENCFF586GNU/ 4640191217 ENCODE Processing Pipeline f15c148d7205ff38262b77bf1c13800f https://www.encodeproject.org/files/ENCFF674YAP/@@download/ENCFF674YAP.bam released s3://encode-public/2016/10/27/3c0ff0ec-da6b-441d-8a07-c14b35f5694b/ENCFF674YAP.bam ENCODE3 hg19 archived ENCFF592HGH bam bam alignments hg19 ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF876IGQ/, /files/ENCFF586GNU/ 3927632991 ENCODE Processing Pipeline 961bed942a0dc178c1e3cfd64ae025a0 https://www.encodeproject.org/files/ENCFF592HGH/@@download/ENCFF592HGH.bam released s3://encode-public/2016/10/27/6096653e-2548-45c9-b1b8-881c994731d7/ENCFF592HGH.bam ENCODE3 hg19 archived ENCFF364SOT bam bam unfiltered alignments GRCh38 ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF876IGQ/, /files/ENCFF586GNU/ 4646589194 ENCODE Processing Pipeline eae957a9d20351a5a0a4ae32933981b8 https://www.encodeproject.org/files/ENCFF364SOT/@@download/ENCFF364SOT.bam released s3://encode-public/2016/10/27/0e1677e0-cd7a-4ea2-9b61-d129b538f002/ENCFF364SOT.bam ENCODE3 GRCh38 archived ENCFF868OFG bam bam alignments GRCh38 ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF876IGQ/, /files/ENCFF586GNU/ 3936583141 ENCODE Processing Pipeline 8f0121b9cabe7667c17537b36b2ea8c3 https://www.encodeproject.org/files/ENCFF868OFG/@@download/ENCFF868OFG.bam released s3://encode-public/2016/10/27/2b8f51cc-a206-4a0b-9761-40198a456096/ENCFF868OFG.bam ENCODE3 GRCh38 archived ENCFF060HTY bam bam alignments GRCh38 ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF586GNU/, /files/ENCFF876IGQ/ 3865858944 ENCODE Processing Pipeline 6b9a79b56b386235cc084b71ab5c6223 https://www.encodeproject.org/files/ENCFF060HTY/@@download/ENCFF060HTY.bam released s3://encode-public/2020/06/02/52fceae3-52b6-4b67-8d90-0767deb4be62/ENCFF060HTY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF733VEI bam bam unfiltered alignments GRCh38 ENCSR570HXV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF586GNU/, /files/ENCFF876IGQ/ 4633896450 ENCODE Processing Pipeline 87b0baad67ef956027b5fc4ab82cd7cf https://www.encodeproject.org/files/ENCFF733VEI/@@download/ENCFF733VEI.bam released s3://encode-public/2020/06/02/f835e54f-f7e0-4859-b18c-9672e34d1baf/ENCFF733VEI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF465LHG fastq fastq reads ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF631QEA/ 3397566436 Richard Myers, HAIB 3e1cbad0861aa7f11f7de7d96aa20785 SRA:SRR6213037 https://www.encodeproject.org/files/ENCFF465LHG/@@download/ENCFF465LHG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/b06a55e6-12c5-441e-afde-58eadd8a1ce0/ENCFF465LHG.fastq.gz ENCFF631QEA fastq fastq reads ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF465LHG/ 3548174175 Richard Myers, HAIB 357b89f41079df71d52fbbfd644ffe34 SRA:SRR6213037 https://www.encodeproject.org/files/ENCFF631QEA/@@download/ENCFF631QEA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/7902fb7c-77af-4f44-8d8d-5bd676e76e2e/ENCFF631QEA.fastq.gz ENCFF294PCB bam bam unfiltered alignments GRCh38 ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF465LHG/, /files/ENCFF631QEA/ 8221350703 ENCODE Processing Pipeline ef0804f25f049352672044f1b6466420 https://www.encodeproject.org/files/ENCFF294PCB/@@download/ENCFF294PCB.bam released s3://encode-public/2016/11/08/0666c190-3261-4d71-b9aa-107f0fd470ef/ENCFF294PCB.bam ENCODE3 GRCh38 archived ENCFF859MZS bam bam unfiltered alignments hg19 ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF465LHG/, /files/ENCFF631QEA/ 8178448628 ENCODE Processing Pipeline bb342ad5ee4f0693127bce280b6460fa https://www.encodeproject.org/files/ENCFF859MZS/@@download/ENCFF859MZS.bam released s3://encode-public/2016/11/08/bf7c173d-708d-4d11-9ae7-9945390a8f06/ENCFF859MZS.bam ENCODE3 hg19 archived ENCFF918TAF bam bam alignments GRCh38 ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF465LHG/, /files/ENCFF631QEA/ 5657246792 ENCODE Processing Pipeline cf960a36fafa5964b220fe12f60e6992 https://www.encodeproject.org/files/ENCFF918TAF/@@download/ENCFF918TAF.bam released s3://encode-public/2016/11/08/3c7e26ad-06ac-460e-8987-0b41fb6d325b/ENCFF918TAF.bam ENCODE3 GRCh38 archived ENCFF823JNB bam bam alignments hg19 ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF465LHG/, /files/ENCFF631QEA/ 5646896869 ENCODE Processing Pipeline 6f80b391e15c9dbb56176374feaf3222 https://www.encodeproject.org/files/ENCFF823JNB/@@download/ENCFF823JNB.bam released s3://encode-public/2016/11/08/6b135a43-ec0e-434d-b41d-c4bdc0cea794/ENCFF823JNB.bam ENCODE3 hg19 archived ENCFF022AXQ bam bam unfiltered alignments GRCh38 ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF631QEA/, /files/ENCFF465LHG/ 8285938245 ENCODE Processing Pipeline 4033cde52a27e12a7c7945984caa0943 https://www.encodeproject.org/files/ENCFF022AXQ/@@download/ENCFF022AXQ.bam released s3://encode-public/2020/10/28/cda181f1-fc7c-4cad-81c1-ebe52bc9b3c7/ENCFF022AXQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF394AGJ bam bam alignments GRCh38 ENCSR281NCY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF631QEA/, /files/ENCFF465LHG/ 5373848133 ENCODE Processing Pipeline b9a79a1dbdf3bd27f0ef52f3c784de74 https://www.encodeproject.org/files/ENCFF394AGJ/@@download/ENCFF394AGJ.bam released s3://encode-public/2020/10/28/478bf5bf-94d6-41fa-8b45-76893dc7ba46/ENCFF394AGJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF932MLY fastq fastq reads ENCSR188ZKB Control ChIP-seq /fly-donors/ENCDO585YHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42142/'], '@type': ['Target', 'Item'], 'name': 'CG17806-dmelanogaster', 'label': 'CG17806', '@id': '/targets/CG17806-dmelanogaster/', 'title': 'CG17806 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '244d3db3-41c2-41a0-8e59-3f05a898c771', 'status': 'released'} dm3 3R 13579945 13675724 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1001954182 Kevin White, UChicago de4a410ca209fefd03ef07634c9f2ceb https://www.encodeproject.org/files/ENCFF932MLY/@@download/ENCFF932MLY.fastq.gz Illumina HiSeq 4000 /files/ENCFF249IDH/, /files/ENCFF835AMF/ released s3://encode-public/2018/09/18/0b3d31d0-0a9b-4909-a0c8-ee1d102a8138/ENCFF932MLY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF020WJK bam bam alignments dm6 ENCSR188ZKB Control ChIP-seq /fly-donors/ENCDO585YHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42142/'], '@type': ['Target', 'Item'], 'name': 'CG17806-dmelanogaster', 'label': 'CG17806', '@id': '/targets/CG17806-dmelanogaster/', 'title': 'CG17806 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '244d3db3-41c2-41a0-8e59-3f05a898c771', 'status': 'released'} dm3 3R 13579945 13675724 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF932MLY/, /files/ENCFF479RCH/ 1363716854 Kevin White, UChicago eb2c86bdeca86d7b517c3416bf26fdbb https://www.encodeproject.org/files/ENCFF020WJK/@@download/ENCFF020WJK.bam released s3://encode-public/2018/09/19/6f9160af-99c3-4d91-bba8-edc7569c3b56/ENCFF020WJK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF832XOY bigWig bigWig signal of unique reads dm6 ENCSR188ZKB Control ChIP-seq /fly-donors/ENCDO585YHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42142/'], '@type': ['Target', 'Item'], 'name': 'CG17806-dmelanogaster', 'label': 'CG17806', '@id': '/targets/CG17806-dmelanogaster/', 'title': 'CG17806 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '244d3db3-41c2-41a0-8e59-3f05a898c771', 'status': 'released'} dm3 3R 13579945 13675724 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF020WJK/ 17808373 Kevin White, UChicago 4f040ca08cf7ac3568bf3d2caa42f58b https://www.encodeproject.org/files/ENCFF832XOY/@@download/ENCFF832XOY.bigWig released s3://encode-public/2018/09/19/c39b3b0d-19dd-4eaf-81e1-5be1a60fb315/ENCFF832XOY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF449UXM bigWig bigWig read-depth normalized signal dm6 ENCSR188ZKB Control ChIP-seq /fly-donors/ENCDO585YHF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42142/'], '@type': ['Target', 'Item'], 'name': 'CG17806-dmelanogaster', 'label': 'CG17806', '@id': '/targets/CG17806-dmelanogaster/', 'title': 'CG17806 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '244d3db3-41c2-41a0-8e59-3f05a898c771', 'status': 'released'} dm3 3R 13579945 13675724 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF020WJK/ 17868857 Kevin White, UChicago 3fe92b85d15be9655b66fe385bbc8d9b https://www.encodeproject.org/files/ENCFF449UXM/@@download/ENCFF449UXM.bigWig released s3://encode-public/2018/09/19/473f68cb-5012-4f33-ba06-05e7b27567f4/ENCFF449UXM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF090EFT fastq fastq reads ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF102SYP/ 1963368710 Richard Myers, HAIB 645d6e7b8e7871f247a64fed8320f376 SRA:SRR6212712 https://www.encodeproject.org/files/ENCFF090EFT/@@download/ENCFF090EFT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/80759e67-12d4-436e-accb-341e9fb5e3a9/ENCFF090EFT.fastq.gz ENCFF102SYP fastq fastq reads ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF090EFT/ 2009850216 Richard Myers, HAIB bd37857fe828d7d6c019c743deea527c SRA:SRR6212712 https://www.encodeproject.org/files/ENCFF102SYP/@@download/ENCFF102SYP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/6981689f-daf9-4863-9dca-0c64410d95ac/ENCFF102SYP.fastq.gz ENCFF859WDZ bam bam unfiltered alignments hg19 ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF102SYP/, /files/ENCFF807MUK/, /files/ENCFF090EFT/ 4778432712 ENCODE Processing Pipeline ab6fb9c47a573f34daa29404df97988f https://www.encodeproject.org/files/ENCFF859WDZ/@@download/ENCFF859WDZ.bam released s3://encode-public/2016/11/08/77607dd1-46fb-4f2b-99a2-d9c929026bd2/ENCFF859WDZ.bam ENCODE3 hg19 archived ENCFF722KBE bam bam unfiltered alignments GRCh38 ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF102SYP/, /files/ENCFF090EFT/, /files/ENCFF643CGH/ 4798252567 ENCODE Processing Pipeline 33022f883f6c4f78bb878e056b13fa8b https://www.encodeproject.org/files/ENCFF722KBE/@@download/ENCFF722KBE.bam released s3://encode-public/2016/11/08/8ef43525-1041-4114-82d6-a6e075507a25/ENCFF722KBE.bam ENCODE3 GRCh38 archived ENCFF300OHV bam bam alignments hg19 ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF102SYP/, /files/ENCFF807MUK/, /files/ENCFF090EFT/ 3370838131 ENCODE Processing Pipeline 88fb052f08bbe018c732660b76cdc17e https://www.encodeproject.org/files/ENCFF300OHV/@@download/ENCFF300OHV.bam released s3://encode-public/2016/11/08/5e02229e-d6b5-4f8b-92f5-b24150c85237/ENCFF300OHV.bam ENCODE3 hg19 archived ENCFF240ZFM bam bam alignments GRCh38 ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF102SYP/, /files/ENCFF090EFT/, /files/ENCFF643CGH/ 3375093296 ENCODE Processing Pipeline e6e102704dc4ba92392123c580f50a9a https://www.encodeproject.org/files/ENCFF240ZFM/@@download/ENCFF240ZFM.bam released s3://encode-public/2016/11/08/ad6b85ef-af4a-4024-af2c-396eac1f8324/ENCFF240ZFM.bam ENCODE3 GRCh38 archived ENCFF358LXX bam bam unfiltered alignments GRCh38 ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF090EFT/, /files/ENCFF110MCL/, /files/ENCFF102SYP/ 4837401720 ENCODE Processing Pipeline 3ec15b9a857fcdf4653b3668d6c07dfb https://www.encodeproject.org/files/ENCFF358LXX/@@download/ENCFF358LXX.bam released s3://encode-public/2020/06/25/a2b13483-3f1d-41be-80c5-6577e31a76b1/ENCFF358LXX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF417QBW bam bam alignments GRCh38 ENCSR138QGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF090EFT/, /files/ENCFF110MCL/, /files/ENCFF102SYP/ 3156903783 ENCODE Processing Pipeline e7dccadfdc05f2a52147274b8e30215c https://www.encodeproject.org/files/ENCFF417QBW/@@download/ENCFF417QBW.bam released s3://encode-public/2020/06/25/43bd07e0-1c87-4555-bdb4-4997de65ddad/ENCFF417QBW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF557HNG fastq fastq reads ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF453HUS/ 2817165832 Michael Snyder, Stanford 1b54c7c9b706a4ab4c8a248649957bd2 SRA:SRR5112375 https://www.encodeproject.org/files/ENCFF557HNG/@@download/ENCFF557HNG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/e10b7f45-aa3f-4708-b922-877c8e98f179/ENCFF557HNG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF453HUS fastq fastq reads ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF557HNG/ 3061051825 Michael Snyder, Stanford f79fbd490006a7adff836ce7051144f8 SRA:SRR5112375 https://www.encodeproject.org/files/ENCFF453HUS/@@download/ENCFF453HUS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/b2609b2b-f488-4487-921f-2e0e8b7e366f/ENCFF453HUS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF370HPX bam bam alignments GRCh38 ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF453HUS/, /files/ENCFF557HNG/ 4743749476 ENCODE Processing Pipeline da7d767cdfe4db6f1c17cea11d9f9d63 https://www.encodeproject.org/files/ENCFF370HPX/@@download/ENCFF370HPX.bam released s3://encode-public/2016/08/13/03112587-ba40-4c60-b3e3-e0b51ae65787/ENCFF370HPX.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF045OVA bam bam unfiltered alignments GRCh38 ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF453HUS/, /files/ENCFF557HNG/ 5895498491 ENCODE Processing Pipeline f3c90e51325cd5f110ba39f0272dd8dd https://www.encodeproject.org/files/ENCFF045OVA/@@download/ENCFF045OVA.bam released s3://encode-public/2016/08/13/010ccba6-1f9b-4054-a7e9-48e69235f249/ENCFF045OVA.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF087ZSB bam bam unfiltered alignments hg19 ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF453HUS/, /files/ENCFF557HNG/ 5888146911 ENCODE Processing Pipeline fe29b39aeef7633926bf8eb8624dd385 https://www.encodeproject.org/files/ENCFF087ZSB/@@download/ENCFF087ZSB.bam released s3://encode-public/2016/09/11/ddb44749-112b-41bb-bfaa-7bbe3d67513b/ENCFF087ZSB.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF083WCY bam bam alignments hg19 ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF453HUS/, /files/ENCFF557HNG/ 4741625836 ENCODE Processing Pipeline ea686b489e7787f746b0e37da498f41f https://www.encodeproject.org/files/ENCFF083WCY/@@download/ENCFF083WCY.bam released s3://encode-public/2016/09/11/42b17642-25a9-45cf-a280-aefc8312c8e0/ENCFF083WCY.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF036EBY bam bam alignments GRCh38 ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF557HNG/, /files/ENCFF453HUS/ 4804285555 ENCODE Processing Pipeline d0071ff80fef93c3a55e8c80c889b1da https://www.encodeproject.org/files/ENCFF036EBY/@@download/ENCFF036EBY.bam released s3://encode-public/2020/06/02/f24bbd42-0b4b-4f3e-b271-486c1254d256/ENCFF036EBY.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF982QRP bam bam unfiltered alignments GRCh38 ENCSR157LMX Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZEB2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9839/'], '@type': ['Target', 'Item'], 'label': 'ZEB2', 'title': 'ZEB2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5bbf4271-773c-4f53-9366-1c48fc0f4619', 'schema_version': '14', 'name': 'ZEB2-human', '@id': '/targets/ZEB2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF557HNG/, /files/ENCFF453HUS/ 5987311999 ENCODE Processing Pipeline 8d397535c370b8136c04e2b3917dc7a8 https://www.encodeproject.org/files/ENCFF982QRP/@@download/ENCFF982QRP.bam released s3://encode-public/2020/06/02/181c58ee-8cbf-47a1-aab2-a024ae1cd430/ENCFF982QRP.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF000AMH bigWig bigWig signal hg19 ENCSR805DRF Control ChIP-seq CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 604724546 Bradley Bernstein, Broad c3f33df44e1064744ac21a1ef73b0253 https://www.encodeproject.org/files/ENCFF000AMH/@@download/ENCFF000AMH.bigWig archived s3://encode-public/2010/11/16/4e72e92d-cceb-4256-bbf8-d5beddbaae0c/ENCFF000AMH.bigWig Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF000AMT fastq fastq reads ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 single-ended 3584644784 Bradley Bernstein, Broad 127923dbb8735eacf8cb78d76fa68ba7 SRA:SRR5339367 https://www.encodeproject.org/files/ENCFF000AMT/@@download/ENCFF000AMT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2010/11/16/962b49e4-2ea7-44d4-a7f7-0ad43fab9698/ENCFF000AMT.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF000AMG bam bam alignments hg19 ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 /files/ENCFF000AMT/ 3529635997 Bradley Bernstein, Broad 7bdd90559fd171969fe6f28068f25227 https://www.encodeproject.org/files/ENCFF000AMG/@@download/ENCFF000AMG.bam archived s3://encode-public/2010/11/16/dcacf29b-7482-4d46-9856-2fd6bc08c92a/ENCFF000AMG.bam Lab custom hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF596XVY bam bam alignments GRCh38 ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 /files/ENCFF000AMT/, /files/ENCFF643CGH/ 2061778988 ENCODE Processing Pipeline 75dea5bfa051c287000beaa464d94fb9 https://www.encodeproject.org/files/ENCFF596XVY/@@download/ENCFF596XVY.bam released s3://encode-public/2016/11/29/d0b5e973-e2b9-43af-b220-09017ca2d7aa/ENCFF596XVY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF092PSB bam bam unfiltered alignments hg19 ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 /files/ENCFF000AMT/, /files/ENCFF807MUK/ 4416260819 ENCODE Processing Pipeline 76cdd555f60e41af3e182f899a20834d https://www.encodeproject.org/files/ENCFF092PSB/@@download/ENCFF092PSB.bam released s3://encode-public/2016/11/30/cff44b64-e92b-4ae7-9334-f28937b86d45/ENCFF092PSB.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF344NKR bam bam unfiltered alignments GRCh38 ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 /files/ENCFF000AMT/, /files/ENCFF643CGH/ 4445314244 ENCODE Processing Pipeline c6eb55b899fbdbdc99ea7d6472d6af0b https://www.encodeproject.org/files/ENCFF344NKR/@@download/ENCFF344NKR.bam released s3://encode-public/2016/11/30/5292bd11-56a6-47b7-af5a-dd62c07f1006/ENCFF344NKR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF697LFQ bam bam alignments hg19 ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 /files/ENCFF000AMT/, /files/ENCFF807MUK/ 2062314152 ENCODE Processing Pipeline b8da865d6c8a709408a118111ccc713a https://www.encodeproject.org/files/ENCFF697LFQ/@@download/ENCFF697LFQ.bam released s3://encode-public/2016/11/30/517445f5-c59c-425e-9be7-0fd710355bb7/ENCFF697LFQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF829GKR bam bam unfiltered alignments GRCh38 ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000AMT/ 4323999730 ENCODE Processing Pipeline 9152b073d03c60bc18f7514d73dffe45 https://www.encodeproject.org/files/ENCFF829GKR/@@download/ENCFF829GKR.bam released s3://encode-public/2020/09/03/c052972f-a6db-40e0-a05b-8850bdade14b/ENCFF829GKR.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF204FWI bam bam alignments GRCh38 ENCSR805DRF Control ChIP-seq /human-donors/ENCDO114AAA/ CL:0000236 B cell primary cell Homo sapiens DNA 2016-11-07 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000AMT/ 2239069185 ENCODE Processing Pipeline df1dd99a9904cb3c9be8a41afaa304e6 https://www.encodeproject.org/files/ENCFF204FWI/@@download/ENCFF204FWI.bam released s3://encode-public/2020/09/03/def9e2cd-faac-48bd-864c-1494608afb16/ENCFF204FWI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF804WKS fastq fastq reads ENCSR706RMI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-520'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/727940/'], '@type': ['Target', 'Item'], 'name': 'RHOXF2B-human', 'label': 'RHOXF2B', '@id': '/targets/RHOXF2B-human/', 'title': 'RHOXF2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2a9d4285-6358-4326-b9a5-5f90253750b6', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF348TNJ/ 2205206559 Michael Snyder, Stanford 4a2e32225f9bfc840f1cb2d2b11019f2 SRA:SRR14838472 https://www.encodeproject.org/files/ENCFF804WKS/@@download/ENCFF804WKS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/26/3a6ff1ca-c6f3-4094-be64-377073154256/ENCFF804WKS.fastq.gz mild to moderate bottlenecking ENCFF348TNJ fastq fastq reads ENCSR706RMI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-520'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/727940/'], '@type': ['Target', 'Item'], 'name': 'RHOXF2B-human', 'label': 'RHOXF2B', '@id': '/targets/RHOXF2B-human/', 'title': 'RHOXF2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2a9d4285-6358-4326-b9a5-5f90253750b6', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF804WKS/ 2488369701 Michael Snyder, Stanford 728a18e025cac4a39ebb4902ab27a782 SRA:SRR14838472 https://www.encodeproject.org/files/ENCFF348TNJ/@@download/ENCFF348TNJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/26/b0ba114d-4e4e-4893-bc0a-573fd59f66d2/ENCFF348TNJ.fastq.gz mild to moderate bottlenecking ENCFF916HJZ bam bam alignments GRCh38 ENCSR706RMI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-520'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/727940/'], '@type': ['Target', 'Item'], 'name': 'RHOXF2B-human', 'label': 'RHOXF2B', '@id': '/targets/RHOXF2B-human/', 'title': 'RHOXF2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2a9d4285-6358-4326-b9a5-5f90253750b6', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF804WKS/, /files/ENCFF348TNJ/ 3570508374 ENCODE Processing Pipeline 914f180daeed90ad3884c9c90b175fc6 https://www.encodeproject.org/files/ENCFF916HJZ/@@download/ENCFF916HJZ.bam released s3://encode-public/2020/04/20/8f89dcba-6ece-4f97-9f2b-8aa0a645a83c/ENCFF916HJZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF565COK bam bam unfiltered alignments GRCh38 ENCSR706RMI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-520'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/727940/'], '@type': ['Target', 'Item'], 'name': 'RHOXF2B-human', 'label': 'RHOXF2B', '@id': '/targets/RHOXF2B-human/', 'title': 'RHOXF2B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2a9d4285-6358-4326-b9a5-5f90253750b6', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF804WKS/, /files/ENCFF348TNJ/ 4614339948 ENCODE Processing Pipeline 25399ce59e49ac7aa093cc1fd4ed794b https://www.encodeproject.org/files/ENCFF565COK/@@download/ENCFF565COK.bam released s3://encode-public/2020/04/20/484650db-41b8-4203-974b-d6d5e864e548/ENCFF565COK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF078LNR tagAlign tagAlign alignments hg19 ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF116PQT/, /files/ENCFF245PQL/ 229756856 Anshul Kundaje, Stanford 3c454a5f48dd5867dcc99ecad2040f4f https://www.encodeproject.org/files/ENCFF078LNR/@@download/ENCFF078LNR.tagAlign.gz archived s3://encode-public/2016/03/30/e728eb0d-1d74-45e1-8cbd-c6cb684f2df6/ENCFF078LNR.tagAlign.gz low read length ENCFF245PQL fastq fastq reads ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 741209693 Zhiping Weng, UMass b1f708ad8974d8318e64308facc160c0 SRA:SRR616673 https://www.encodeproject.org/files/ENCFF245PQL/@@download/ENCFF245PQL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/c98b8341-d5d8-4c5a-8f21-6779372db5a5/ENCFF245PQL.fastq.gz low read length ENCFF116PQT fastq fastq reads ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 871986686 Zhiping Weng, UMass e444d28396a8b933795cf3b60af53b61 SRA:SRR616672 https://www.encodeproject.org/files/ENCFF116PQT/@@download/ENCFF116PQT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/19/df41279d-922e-4c99-b9d6-d44cb8df0065/ENCFF116PQT.fastq.gz low read length ENCFF917YUP bam bam unfiltered alignments GRCh38 ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF116PQT/, /files/ENCFF643CGH/, /files/ENCFF245PQL/ 2021282575 ENCODE Processing Pipeline aa5fbceaab8f95f3569a68c24342c348 https://www.encodeproject.org/files/ENCFF917YUP/@@download/ENCFF917YUP.bam released s3://encode-public/2016/12/19/1dbf2b73-17de-4bb4-9e7c-5e10cd62a8ce/ENCFF917YUP.bam ENCODE3 GRCh38 archived low read length ENCFF923SNJ bam bam unfiltered alignments hg19 ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF116PQT/, /files/ENCFF807MUK/, /files/ENCFF245PQL/ 2011990304 ENCODE Processing Pipeline f58c25fdf6ae808ce0087c7552232860 https://www.encodeproject.org/files/ENCFF923SNJ/@@download/ENCFF923SNJ.bam released s3://encode-public/2016/12/19/a25699ed-c21d-4795-8731-ec56961969cd/ENCFF923SNJ.bam ENCODE3 hg19 archived low read length ENCFF625BZY bam bam alignments GRCh38 ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF116PQT/, /files/ENCFF643CGH/, /files/ENCFF245PQL/ 1363173441 ENCODE Processing Pipeline a71900a39179995e39a2d1537fedd153 https://www.encodeproject.org/files/ENCFF625BZY/@@download/ENCFF625BZY.bam released s3://encode-public/2016/12/19/e492ce81-9ed4-46d2-bbfb-d04dbe1e8fc6/ENCFF625BZY.bam ENCODE3 GRCh38 archived low read length ENCFF970NQD bam bam alignments hg19 ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF116PQT/, /files/ENCFF807MUK/, /files/ENCFF245PQL/ 1363461467 ENCODE Processing Pipeline fe919779f80cc56bae301b2cdcce1b0b https://www.encodeproject.org/files/ENCFF970NQD/@@download/ENCFF970NQD.bam released s3://encode-public/2016/12/19/c23eb696-f6eb-47fe-b70a-b8bd4e4be30c/ENCFF970NQD.bam ENCODE3 hg19 archived low read length ENCFF234KPB tagAlign tagAlign alignments hg19 ENCSR064RLF Control ChIP-seq UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 204667234 Anshul Kundaje, Stanford 71391324be10763266103f3d7cf154ce https://www.encodeproject.org/files/ENCFF234KPB/@@download/ENCFF234KPB.tagAlign.gz archived s3://encode-public/2016/02/11/3c208f26-1910-4c82-b9f8-ae8b69f69ab1/ENCFF234KPB.tagAlign.gz low read length ENCFF876YUP bam bam unfiltered alignments GRCh38 ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF116PQT/, /files/ENCFF110MCL/, /files/ENCFF245PQL/ 1945251069 ENCODE Processing Pipeline 66c39d282eec0933a1e5b0169154c063 https://www.encodeproject.org/files/ENCFF876YUP/@@download/ENCFF876YUP.bam released s3://encode-public/2020/08/06/3a6481b5-cf1a-4650-b790-239af0959a5c/ENCFF876YUP.bam ENCODE4 GRCh38 released low read length ENCFF842TYP bam bam alignments GRCh38 ENCSR064RLF Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF116PQT/, /files/ENCFF110MCL/, /files/ENCFF245PQL/ 1476803989 ENCODE Processing Pipeline f83f5ac106397b7375aa7e6f4c046016 https://www.encodeproject.org/files/ENCFF842TYP/@@download/ENCFF842TYP.bam released s3://encode-public/2020/08/06/11117f41-eb64-40bf-ae70-90c50032f066/ENCFF842TYP.bam ENCODE4 GRCh38 released low read length ENCFF023XDP fastq fastq reads ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 94562607 Michael Snyder, Stanford 90ad5a66e1b6f3a1cf0979a267b9f783 https://www.encodeproject.org/files/ENCFF023XDP/@@download/ENCFF023XDP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/b191f361-45c5-4e55-bb8c-24901ce7732a/ENCFF023XDP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF229JKH fastq fastq reads ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 105880501 Michael Snyder, Stanford 8b7791ad415e58e122c2ccd6b7b7a556 https://www.encodeproject.org/files/ENCFF229JKH/@@download/ENCFF229JKH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/8550f905-8620-406f-9273-21a9082d03bf/ENCFF229JKH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF767YKU bam bam alignments ce10 ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF229JKH/, /files/ENCFF023XDP/, /files/ENCFF987UMF/ 267601018 Kevin White, UChicago 263ec2b65558f45b1b0b45e68e9f38df https://www.encodeproject.org/files/ENCFF767YKU/@@download/ENCFF767YKU.bam released s3://encode-public/2017/04/27/7f62eb28-448d-491b-99c7-a408332a58e4/ENCFF767YKU.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF751JUT bam bam alignments ce11 ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF229JKH/, /files/ENCFF023XDP/, /files/ENCFF586MOL/ 267904332 Kevin White, UChicago 66700d2cb41df276b256c3ac475dab74 https://www.encodeproject.org/files/ENCFF751JUT/@@download/ENCFF751JUT.bam released s3://encode-public/2017/04/27/2a233614-ef6b-4896-b157-26f24bc28c52/ENCFF751JUT.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF707SHH bigWig bigWig signal of unique reads ce10 ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF767YKU/ 10049918 Kevin White, UChicago fd43ea782b9b1c09af010c852dde9d2e https://www.encodeproject.org/files/ENCFF707SHH/@@download/ENCFF707SHH.bigWig released s3://encode-public/2017/04/29/02ed5d5d-9e17-4c09-9cee-4ce1d8377d5a/ENCFF707SHH.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF887HWW bigWig bigWig read-depth normalized signal ce10 ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF767YKU/ 10021385 Kevin White, UChicago 4f5e29f6d4a5b10294e98f5d65406fce https://www.encodeproject.org/files/ENCFF887HWW/@@download/ENCFF887HWW.bigWig released s3://encode-public/2017/04/29/e0dd66cd-0315-4421-86ba-95863eda276c/ENCFF887HWW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF876ALV bigWig bigWig signal of unique reads ce11 ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF751JUT/ 10052509 Kevin White, UChicago ebe6fc0fc56c1ab08a350636307feba1 https://www.encodeproject.org/files/ENCFF876ALV/@@download/ENCFF876ALV.bigWig released s3://encode-public/2017/04/29/d6fbb487-2ad6-470c-ab87-8168d28e53f5/ENCFF876ALV.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF897HCX bigWig bigWig read-depth normalized signal ce11 ENCSR243FJF Control ChIP-seq /worm-donors/ENCDO368JHM/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172981/'], '@type': ['Target', 'Item'], 'name': 'daf-16-celegans', 'label': 'daf-16', '@id': '/targets/daf-16-celegans/', 'title': 'daf-16 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1fea75a7-ef01-40bc-a89f-c9421d076016', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF751JUT/ 10023716 Kevin White, UChicago 762ebd7fe47f57b1485becff768aa732 https://www.encodeproject.org/files/ENCFF897HCX/@@download/ENCFF897HCX.bigWig released s3://encode-public/2017/04/29/8b17a552-2daa-4ea5-8144-611bc43a92d1/ENCFF897HCX.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF952FAG fastq fastq reads ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF956RLS/ 2904636117 Michael Snyder, Stanford 511e9efc028fc0e59c081613a3c8da16 SRA:SRR5112386 https://www.encodeproject.org/files/ENCFF952FAG/@@download/ENCFF952FAG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/92ccc7db-e5e2-41c0-9f42-27cd9db2593d/ENCFF952FAG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF956RLS fastq fastq reads ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF952FAG/ 3153883998 Michael Snyder, Stanford e4a6356a86aab2ea0a9ddee4bb15d9ad SRA:SRR5112386 https://www.encodeproject.org/files/ENCFF956RLS/@@download/ENCFF956RLS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/957c5901-44ed-4b80-a05f-39b028bb5533/ENCFF956RLS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF424ATY bam bam unfiltered alignments GRCh38 ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF952FAG/, /files/ENCFF643CGH/, /files/ENCFF956RLS/ 6126569610 ENCODE Processing Pipeline 32bd3fb36c9b9de5ed1fd236af19b9ee https://www.encodeproject.org/files/ENCFF424ATY/@@download/ENCFF424ATY.bam released s3://encode-public/2016/08/13/53e213ed-a093-4612-9898-4e06810907ea/ENCFF424ATY.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF145UQB bam bam alignments GRCh38 ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF952FAG/, /files/ENCFF643CGH/, /files/ENCFF956RLS/ 4956069072 ENCODE Processing Pipeline 97726b65ddb9f4633bbd87566e98aa39 https://www.encodeproject.org/files/ENCFF145UQB/@@download/ENCFF145UQB.bam released s3://encode-public/2016/08/13/a6ea8318-248f-4383-ab7d-f155582300db/ENCFF145UQB.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF650VUY bam bam unfiltered alignments hg19 ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF952FAG/, /files/ENCFF807MUK/, /files/ENCFF956RLS/ 6116866604 ENCODE Processing Pipeline 537d50bccb0d16928144d9a10252d1f5 https://www.encodeproject.org/files/ENCFF650VUY/@@download/ENCFF650VUY.bam released s3://encode-public/2016/09/11/62a2d77d-24a3-4ee4-b047-4e1bbd7e80d0/ENCFF650VUY.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF361NSP bam bam alignments hg19 ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF952FAG/, /files/ENCFF807MUK/, /files/ENCFF956RLS/ 4952430120 ENCODE Processing Pipeline bf86b8aa3c531e42831ce32c11ada791 https://www.encodeproject.org/files/ENCFF361NSP/@@download/ENCFF361NSP.bam released s3://encode-public/2016/09/11/df8517c7-2885-499e-836c-eb84e428a129/ENCFF361NSP.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF300ATN bam bam alignments GRCh38 ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF952FAG/, /files/ENCFF956RLS/ 5021044192 ENCODE Processing Pipeline e7043958ef35cb8e2e42b1ef5d2f2a54 https://www.encodeproject.org/files/ENCFF300ATN/@@download/ENCFF300ATN.bam released s3://encode-public/2020/06/02/5a43caf4-5432-4f9b-afb8-66e1a92d1e43/ENCFF300ATN.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF642LWK bam bam unfiltered alignments GRCh38 ENCSR688NWK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF952FAG/, /files/ENCFF956RLS/ 6218581006 ENCODE Processing Pipeline e0d751d70f22966e0838a2db97010470 https://www.encodeproject.org/files/ENCFF642LWK/@@download/ENCFF642LWK.bam released s3://encode-public/2020/06/02/aa22ba0f-ea51-4a99-98d1-e4c3f70172f7/ENCFF642LWK.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF713JPJ fastq fastq reads ENCSR849IRM Control ChIP-seq /fly-donors/ENCDO856AWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38086/'], '@type': ['Target', 'Item'], 'name': 'CG13894-dmelanogaster', 'label': 'CG13894', '@id': '/targets/CG13894-dmelanogaster/', 'title': 'CG13894 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8b9b40ee-0d17-448b-84e5-32467f57f0c0', 'status': 'released'} dm3 3L 684385 707594 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1165784993 Kevin White, UChicago 4555639f3a96ee9c196c852b0650e23c https://www.encodeproject.org/files/ENCFF713JPJ/@@download/ENCFF713JPJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF632IYG/ released s3://encode-public/2018/09/18/868155fe-46e6-4d82-8e7b-c6a45a950b17/ENCFF713JPJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF191ESW bam bam alignments dm6 ENCSR849IRM Control ChIP-seq /fly-donors/ENCDO856AWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38086/'], '@type': ['Target', 'Item'], 'name': 'CG13894-dmelanogaster', 'label': 'CG13894', '@id': '/targets/CG13894-dmelanogaster/', 'title': 'CG13894 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8b9b40ee-0d17-448b-84e5-32467f57f0c0', 'status': 'released'} dm3 3L 684385 707594 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF713JPJ/, /files/ENCFF479RCH/ 1544846541 Kevin White, UChicago ef06653c3337c3bd2fa09db4686f4ca7 https://www.encodeproject.org/files/ENCFF191ESW/@@download/ENCFF191ESW.bam released s3://encode-public/2018/09/19/5406bde3-6f15-412a-9999-b391ffb6722b/ENCFF191ESW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF635TPQ bigWig bigWig signal of unique reads dm6 ENCSR849IRM Control ChIP-seq /fly-donors/ENCDO856AWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38086/'], '@type': ['Target', 'Item'], 'name': 'CG13894-dmelanogaster', 'label': 'CG13894', '@id': '/targets/CG13894-dmelanogaster/', 'title': 'CG13894 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8b9b40ee-0d17-448b-84e5-32467f57f0c0', 'status': 'released'} dm3 3L 684385 707594 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF191ESW/ 17875582 Kevin White, UChicago 735bbf3a7d6962518e126356eef87463 https://www.encodeproject.org/files/ENCFF635TPQ/@@download/ENCFF635TPQ.bigWig released s3://encode-public/2018/09/19/68366a31-8621-4ab5-a6ab-a92ae0404d21/ENCFF635TPQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF126AVV bigWig bigWig read-depth normalized signal dm6 ENCSR849IRM Control ChIP-seq /fly-donors/ENCDO856AWW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38086/'], '@type': ['Target', 'Item'], 'name': 'CG13894-dmelanogaster', 'label': 'CG13894', '@id': '/targets/CG13894-dmelanogaster/', 'title': 'CG13894 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8b9b40ee-0d17-448b-84e5-32467f57f0c0', 'status': 'released'} dm3 3L 684385 707594 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF191ESW/ 17854393 Kevin White, UChicago cef10eb46e310ce3d0adddf4cf44b057 https://www.encodeproject.org/files/ENCFF126AVV/@@download/ENCFF126AVV.bigWig released s3://encode-public/2018/09/19/a5bc54a8-4fa4-44b0-8423-3c1803fb5aa3/ENCFF126AVV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF502QEU fastq fastq reads ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF495BLX/ 2792929226 Richard Myers, HAIB 1e2558d11942b1b0b55a7aede66b0a6e SRA:SRR6214340 https://www.encodeproject.org/files/ENCFF502QEU/@@download/ENCFF502QEU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/169ae37d-19df-463c-81de-174eb1e2cfae/ENCFF502QEU.fastq.gz ENCFF495BLX fastq fastq reads ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF502QEU/ 2917748298 Richard Myers, HAIB b2290cc45013b8abc4105e0c49371b07 SRA:SRR6214340 https://www.encodeproject.org/files/ENCFF495BLX/@@download/ENCFF495BLX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/e06ec686-e02d-4425-8e91-c53d389c0ddd/ENCFF495BLX.fastq.gz ENCFF880GGZ bam bam unfiltered alignments GRCh38 ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF502QEU/, /files/ENCFF643CGH/, /files/ENCFF495BLX/ 6855160637 ENCODE Processing Pipeline 9e30c31f94527a7f5c8638ce50429707 https://www.encodeproject.org/files/ENCFF880GGZ/@@download/ENCFF880GGZ.bam released s3://encode-public/2016/11/08/a33800d9-cae3-4699-9e73-ea453f31e3b0/ENCFF880GGZ.bam ENCODE3 GRCh38 archived ENCFF652KWB bam bam unfiltered alignments hg19 ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF502QEU/, /files/ENCFF807MUK/, /files/ENCFF495BLX/ 6823564988 ENCODE Processing Pipeline db42dcc735e5d155969bba132f4e3a15 https://www.encodeproject.org/files/ENCFF652KWB/@@download/ENCFF652KWB.bam released s3://encode-public/2016/11/08/9f6b3fad-a127-4a36-b70f-0f7b85e5d9a9/ENCFF652KWB.bam ENCODE3 hg19 archived ENCFF194FBM bam bam alignments GRCh38 ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF502QEU/, /files/ENCFF643CGH/, /files/ENCFF495BLX/ 4796637039 ENCODE Processing Pipeline f92d4c966731c174e374f68fa0b76ada https://www.encodeproject.org/files/ENCFF194FBM/@@download/ENCFF194FBM.bam released s3://encode-public/2016/11/08/784ac723-fa6a-48e1-bb9c-d771c3b77149/ENCFF194FBM.bam ENCODE3 GRCh38 archived ENCFF401GWQ bam bam alignments hg19 ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF502QEU/, /files/ENCFF807MUK/, /files/ENCFF495BLX/ 4790279863 ENCODE Processing Pipeline 608f1b94ec52f79e4379680bc6b82d95 https://www.encodeproject.org/files/ENCFF401GWQ/@@download/ENCFF401GWQ.bam released s3://encode-public/2016/11/08/b3ffcbe4-c5f4-4551-8b1b-5f0350a2b862/ENCFF401GWQ.bam ENCODE3 hg19 archived ENCFF248JWF bam bam unfiltered alignments GRCh38 ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF502QEU/, /files/ENCFF495BLX/ 6891039807 ENCODE Processing Pipeline 5a9d555c641e61de2b143d54aa29789c https://www.encodeproject.org/files/ENCFF248JWF/@@download/ENCFF248JWF.bam released s3://encode-public/2020/06/24/ec0f2bcb-b61b-4c22-9c3a-a3af45273d1e/ENCFF248JWF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF546TUH bam bam alignments GRCh38 ENCSR864PNP Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF502QEU/, /files/ENCFF495BLX/ 4558162187 ENCODE Processing Pipeline 6679d27ab5af13315e175abdae1bd88c https://www.encodeproject.org/files/ENCFF546TUH/@@download/ENCFF546TUH.bam released s3://encode-public/2020/06/24/f3e9c901-e523-4e08-b019-e742c55c1b35/ENCFF546TUH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF131JHB fastq fastq reads ENCSR978EBX Control ChIP-seq /fly-donors/ENCDO047ERF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42882/'], '@type': ['Target', 'Item'], 'name': 'Spps-dmelanogaster', 'label': 'Spps', '@id': '/targets/Spps-dmelanogaster/', 'title': 'Spps (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e06ebcc-34bd-481d-8b18-e2cb02f2d03e', 'status': 'released'} dm3 3R 20037255 20058289 DNA 2022-01-31 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 65045117 Kevin White, UChicago d8214fc7939bed9e3b98ba4b8daa2ed4 https://www.encodeproject.org/files/ENCFF131JHB/@@download/ENCFF131JHB.fastq.gz Illumina HiSeq 4000 /files/ENCFF666KHN/ released s3://encode-public/2018/09/18/1bede042-badd-46e0-b62b-1a1bdf63b117/ENCFF131JHB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF982UQG bam bam alignments dm6 ENCSR978EBX Control ChIP-seq /fly-donors/ENCDO047ERF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42882/'], '@type': ['Target', 'Item'], 'name': 'Spps-dmelanogaster', 'label': 'Spps', '@id': '/targets/Spps-dmelanogaster/', 'title': 'Spps (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e06ebcc-34bd-481d-8b18-e2cb02f2d03e', 'status': 'released'} dm3 3R 20037255 20058289 DNA 2022-01-31 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF131JHB/, /files/ENCFF724VTI/, /files/ENCFF479RCH/ 1496475076 Kevin White, UChicago 7f44af8e3963dc459a17fbd072eb1e4f https://www.encodeproject.org/files/ENCFF982UQG/@@download/ENCFF982UQG.bam released s3://encode-public/2018/09/19/71ac2061-aed7-4bab-bdf2-398c31847c93/ENCFF982UQG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF510XFG bigWig bigWig signal of unique reads dm6 ENCSR978EBX Control ChIP-seq /fly-donors/ENCDO047ERF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42882/'], '@type': ['Target', 'Item'], 'name': 'Spps-dmelanogaster', 'label': 'Spps', '@id': '/targets/Spps-dmelanogaster/', 'title': 'Spps (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e06ebcc-34bd-481d-8b18-e2cb02f2d03e', 'status': 'released'} dm3 3R 20037255 20058289 DNA 2022-01-31 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF982UQG/ 17849495 Kevin White, UChicago 7bcf240dd1242a45b9b9bddb1e8b98d3 https://www.encodeproject.org/files/ENCFF510XFG/@@download/ENCFF510XFG.bigWig released s3://encode-public/2018/09/19/8caa5c05-5fc4-41f7-a6d0-e1da7f488430/ENCFF510XFG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF050WXV bigWig bigWig read-depth normalized signal dm6 ENCSR978EBX Control ChIP-seq /fly-donors/ENCDO047ERF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42882/'], '@type': ['Target', 'Item'], 'name': 'Spps-dmelanogaster', 'label': 'Spps', '@id': '/targets/Spps-dmelanogaster/', 'title': 'Spps (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e06ebcc-34bd-481d-8b18-e2cb02f2d03e', 'status': 'released'} dm3 3R 20037255 20058289 DNA 2022-01-31 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF982UQG/ 17831131 Kevin White, UChicago 2d9366acb44572b62fc1003b3cebefd9 https://www.encodeproject.org/files/ENCFF050WXV/@@download/ENCFF050WXV.bigWig released s3://encode-public/2018/09/19/cf471447-d83a-421e-9d62-070b4f75bc4c/ENCFF050WXV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF724VTI fastq fastq reads ENCSR978EBX Control ChIP-seq /fly-donors/ENCDO047ERF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42882/'], '@type': ['Target', 'Item'], 'name': 'Spps-dmelanogaster', 'label': 'Spps', '@id': '/targets/Spps-dmelanogaster/', 'title': 'Spps (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e06ebcc-34bd-481d-8b18-e2cb02f2d03e', 'status': 'released'} dm3 3R 20037255 20058289 DNA 2022-01-31 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1041033961 Kevin White, UChicago 7f46e30df87431011c0c57edf5c2d307 https://www.encodeproject.org/files/ENCFF724VTI/@@download/ENCFF724VTI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/16/2f5f3afc-6119-4514-b55a-6ed78964e3ae/ENCFF724VTI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF473CDC bam bam unfiltered alignments GRCh38 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 /files/ENCFF000VLG/, /files/ENCFF643CGH/ 1327255849 ENCODE Processing Pipeline 94ed9f844c8e468cef98ab5d72c8bde2 https://www.encodeproject.org/files/ENCFF473CDC/@@download/ENCFF473CDC.bam released s3://encode-public/2016/10/29/2b1c27de-b3fb-4439-9727-84fb6b296ea1/ENCFF473CDC.bam ENCODE3 GRCh38 archived insufficient read length ENCFF629IGF bam bam alignments hg19 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 /files/ENCFF000VLG/, /files/ENCFF807MUK/ 830857940 ENCODE Processing Pipeline 072bf40b3aee7bfbd7c01162acb6aa1a https://www.encodeproject.org/files/ENCFF629IGF/@@download/ENCFF629IGF.bam released s3://encode-public/2016/08/23/a641f668-46e7-422b-8240-987f69bd387c/ENCFF629IGF.bam ENCODE3 hg19 archived insufficient read length ENCFF948ZMS bam bam unfiltered alignments hg19 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 /files/ENCFF000VLG/, /files/ENCFF807MUK/ 1321228575 ENCODE Processing Pipeline 0ff8524fa5cf211647e70ba8a8e9c214 https://www.encodeproject.org/files/ENCFF948ZMS/@@download/ENCFF948ZMS.bam released s3://encode-public/2016/08/23/9ee13fb7-b253-4a76-b966-87247bc2a454/ENCFF948ZMS.bam ENCODE3 hg19 archived insufficient read length ENCFF000VLG fastq fastq reads ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 single-ended 905777766 Peggy Farnham, USC 227a9d1068936d528d371dc6ad3a05b8 SRA:SRR14637956 https://www.encodeproject.org/files/ENCFF000VLG/@@download/ENCFF000VLG.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/968fb6eb-934a-473d-b213-a0f2d0717313/ENCFF000VLG.fastq.gz insufficient read length ENCFF000VLC bam bam alignments hg19 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 /files/ENCFF000VLG/ 626189523 Peggy Farnham, USC aba4f90213b861c611c210c0b1efb1bc https://www.encodeproject.org/files/ENCFF000VLC/@@download/ENCFF000VLC.bam archived s3://encode-public/2011/03/22/59afba33-a493-4e0a-8b2a-455aceaef190/ENCFF000VLC.bam Lab custom hg19 archived insufficient read length ENCFF000VLD bigWig bigWig signal hg19 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 /files/ENCFF000VLC/ 374126814 Peggy Farnham, USC 1703428d05d1308e95d8e8b45aacac3d https://www.encodeproject.org/files/ENCFF000VLD/@@download/ENCFF000VLD.bigWig archived s3://encode-public/2011/03/22/f66b2eff-526c-4bfa-8890-736b0e94b87e/ENCFF000VLD.bigWig Lab custom hg19 archived insufficient read length ENCFF643ELQ bam bam alignments GRCh38 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 /files/ENCFF000VLG/, /files/ENCFF643CGH/ 830326871 ENCODE Processing Pipeline 99e29bafcc27f8d01717881786da282e https://www.encodeproject.org/files/ENCFF643ELQ/@@download/ENCFF643ELQ.bam released s3://encode-public/2016/10/29/50557d27-9c7f-4355-92b6-a3699519982a/ENCFF643ELQ.bam ENCODE3 GRCh38 archived insufficient read length ENCFF038MMW bam bam unfiltered alignments GRCh38 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000VLG/ 1283090019 ENCODE Processing Pipeline fd51619e889758dfac59311ca1df897c https://www.encodeproject.org/files/ENCFF038MMW/@@download/ENCFF038MMW.bam released s3://encode-public/2020/10/27/74c2707a-6473-47a9-a5ce-895b6eb16e79/ENCFF038MMW.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF029VLD bam bam alignments GRCh38 ENCSR938LXW Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens DNA 2017-06-01 ENCODE see document 1 1_1 32 /files/ENCFF110MCL/, /files/ENCFF000VLG/ 880490599 ENCODE Processing Pipeline 31fdf89dbd8622f2c5d616a1d2737b69 https://www.encodeproject.org/files/ENCFF029VLD/@@download/ENCFF029VLD.bam released s3://encode-public/2020/10/27/ca7644e0-8521-4455-a7cf-233714978020/ENCFF029VLD.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF115PHM fastq fastq reads ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1573496538 Bradley Bernstein, Broad c077350126b43eb2849ca1cee97de490 SRA:SRR5339438 https://www.encodeproject.org/files/ENCFF115PHM/@@download/ENCFF115PHM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/f2243bc1-8191-4a3f-9417-8f4ad2566765/ENCFF115PHM.fastq.gz ENCFF342XML fastq fastq reads ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1593815638 Bradley Bernstein, Broad 6d9fea5f207b77ff0bba53e8c83d618a SRA:SRR5339439 https://www.encodeproject.org/files/ENCFF342XML/@@download/ENCFF342XML.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/c9a2131e-3d48-46a9-b19c-8abed0e66984/ENCFF342XML.fastq.gz ENCFF064RAZ fastq fastq reads ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 1633200258 Bradley Bernstein, Broad 77f1f4d1d04ac93bfd8689b82928afdc SRA:SRR5339436 https://www.encodeproject.org/files/ENCFF064RAZ/@@download/ENCFF064RAZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/6f7f9212-10bc-4272-8107-398aade3e86c/ENCFF064RAZ.fastq.gz ENCFF564EJZ fastq fastq reads ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 single-ended 1588766723 Bradley Bernstein, Broad e36302935f2b75ac6a627d307058a695 SRA:SRR5339437 https://www.encodeproject.org/files/ENCFF564EJZ/@@download/ENCFF564EJZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/e4342934-341b-4ec0-af4e-d27e49228e5d/ENCFF564EJZ.fastq.gz ENCFF120GPO bam bam alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF564EJZ/, /files/ENCFF064RAZ/ 2567010671 ENCODE Processing Pipeline 899e113ca8469fc9bbde52787afdaeaf https://www.encodeproject.org/files/ENCFF120GPO/@@download/ENCFF120GPO.bam released s3://encode-public/2016/10/27/b2870bc1-4f99-468e-b723-a5e35ceb6f18/ENCFF120GPO.bam ENCODE3 GRCh38 archived ENCFF759XSW bam bam alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF342XML/, /files/ENCFF115PHM/ 2560204927 ENCODE Processing Pipeline 2f29887e5403e0c477875dda4633e1d6 https://www.encodeproject.org/files/ENCFF759XSW/@@download/ENCFF759XSW.bam released s3://encode-public/2016/10/27/ecd2eaea-084f-4ed4-bc1e-6e08723155a4/ENCFF759XSW.bam ENCODE3 GRCh38 archived ENCFF326MZA bam bam unfiltered alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF564EJZ/, /files/ENCFF064RAZ/ 3099888456 ENCODE Processing Pipeline 6029a352c13f26a4c913ba761cdc731b https://www.encodeproject.org/files/ENCFF326MZA/@@download/ENCFF326MZA.bam released s3://encode-public/2016/10/27/b51c3917-26ce-44b3-a85c-f162a9f230ae/ENCFF326MZA.bam ENCODE3 GRCh38 archived ENCFF528RAC bam bam unfiltered alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF342XML/, /files/ENCFF115PHM/ 3018010719 ENCODE Processing Pipeline 78db0c1dd99c7c69481193a9d1ada110 https://www.encodeproject.org/files/ENCFF528RAC/@@download/ENCFF528RAC.bam released s3://encode-public/2016/10/27/6cfb2457-5b72-4b25-ba79-b2958b2a39ae/ENCFF528RAC.bam ENCODE3 GRCh38 archived ENCFF658KDM bam bam alignments hg19 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF564EJZ/, /files/ENCFF064RAZ/ 2564023305 ENCODE Processing Pipeline 042cc1b0c3888080d392da5e123748ac https://www.encodeproject.org/files/ENCFF658KDM/@@download/ENCFF658KDM.bam released s3://encode-public/2016/10/27/1d94cecf-711b-47b6-9cef-e08a571893db/ENCFF658KDM.bam ENCODE3 hg19 archived ENCFF788MNJ bam bam unfiltered alignments hg19 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF342XML/, /files/ENCFF115PHM/ 3011430626 ENCODE Processing Pipeline 645a9f49726b54590e3bc772c8171785 https://www.encodeproject.org/files/ENCFF788MNJ/@@download/ENCFF788MNJ.bam released s3://encode-public/2016/10/27/623dfd64-78ed-4041-9a99-9876e51f315c/ENCFF788MNJ.bam ENCODE3 hg19 archived ENCFF482EGB bam bam unfiltered alignments hg19 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF564EJZ/, /files/ENCFF064RAZ/ 3092980439 ENCODE Processing Pipeline 55a72e2be0dd77f212715e08cfc22bd5 https://www.encodeproject.org/files/ENCFF482EGB/@@download/ENCFF482EGB.bam released s3://encode-public/2016/10/27/1f96e0f2-6603-47fd-9f83-01fc2baf93a1/ENCFF482EGB.bam ENCODE3 hg19 archived ENCFF491GAC bam bam alignments hg19 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF342XML/, /files/ENCFF115PHM/ 2557638969 ENCODE Processing Pipeline 8a2052613d0c46012280e1d68e0c6198 https://www.encodeproject.org/files/ENCFF491GAC/@@download/ENCFF491GAC.bam released s3://encode-public/2016/10/27/76579852-022a-467c-b70f-f7b797934601/ENCFF491GAC.bam ENCODE3 hg19 archived ENCFF784FYQ bam bam unfiltered alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF115PHM/, /files/ENCFF110MCL/, /files/ENCFF342XML/ 3053891208 ENCODE Processing Pipeline de50051cfe9210c5c72115bc3c20000c https://www.encodeproject.org/files/ENCFF784FYQ/@@download/ENCFF784FYQ.bam released s3://encode-public/2020/08/20/b7ed561d-dc2b-49a7-a84b-d2efb0cc7214/ENCFF784FYQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF803RNC bam bam unfiltered alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF064RAZ/, /files/ENCFF110MCL/, /files/ENCFF564EJZ/ 3151415012 ENCODE Processing Pipeline efcc31e15d9a46b79b733c13c5d02387 https://www.encodeproject.org/files/ENCFF803RNC/@@download/ENCFF803RNC.bam released s3://encode-public/2020/08/20/2f8a2321-3d08-4473-b71d-627598071d71/ENCFF803RNC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF070CND bam bam alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF115PHM/, /files/ENCFF110MCL/, /files/ENCFF342XML/ 2622435958 ENCODE Processing Pipeline 8de5952a16631a508932e27f0a75bd02 https://www.encodeproject.org/files/ENCFF070CND/@@download/ENCFF070CND.bam released s3://encode-public/2020/08/20/d8a34e95-487c-4bf5-a3aa-bc4966c7d115/ENCFF070CND.bam ENCODE4 v1.5.1 GRCh38 released ENCFF439INC bam bam alignments GRCh38 ENCSR867SJE Control ChIP-seq /human-donors/ENCDO924HBJ/ CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens DNA 2016-11-03 ENCODE 200-600 2 2_1 76 /files/ENCFF064RAZ/, /files/ENCFF110MCL/, /files/ENCFF564EJZ/ 2638186999 ENCODE Processing Pipeline 4fff7a0ba3c081f9b3aec93a997cd969 https://www.encodeproject.org/files/ENCFF439INC/@@download/ENCFF439INC.bam released s3://encode-public/2020/08/20/204ebf6e-729b-4251-9a62-22b33b5fdd29/ENCFF439INC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF758OHN fastq fastq reads ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 2319686962 Zhiping Weng, UMass e75b1fcd188f4739597dcaa2f615b16c SRA:SRR643658 https://www.encodeproject.org/files/ENCFF758OHN/@@download/ENCFF758OHN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/3006847e-bc36-4cd7-9143-00febceb1201/ENCFF758OHN.fastq.gz mild to moderate bottlenecking ENCFF139XNV bam bam unfiltered alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF758OHN/, /files/ENCFF110MCL/ 2597257063 ENCODE Processing Pipeline 2cb062ca0497f54ed78d9a3fb367f4e9 https://www.encodeproject.org/files/ENCFF139XNV/@@download/ENCFF139XNV.bam released s3://encode-public/2020/10/08/ae6a7fc5-fbdb-4ad1-bb35-27c1e59f1f57/ENCFF139XNV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF964MSO bam bam alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF758OHN/ 1631156878 ENCODE Processing Pipeline 4c7663ca13b8837fad5f31786ae0d5ac https://www.encodeproject.org/files/ENCFF964MSO/@@download/ENCFF964MSO.bam released s3://encode-public/2017/03/20/ab74e6a0-8111-4f65-b08b-48b8b1d62854/ENCFF964MSO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF971YNR bam bam unfiltered alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF758OHN/ 2629910182 ENCODE Processing Pipeline d4d95496fe59204b4cb1a3ee3e5221a4 https://www.encodeproject.org/files/ENCFF971YNR/@@download/ENCFF971YNR.bam released s3://encode-public/2017/03/20/67c59e23-2807-44ce-9951-c6f041870a8a/ENCFF971YNR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF261UVV bam bam alignments hg19 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF758OHN/ 1630152825 ENCODE Processing Pipeline c70e4bba7f8e5599f038708c8bb08b46 https://www.encodeproject.org/files/ENCFF261UVV/@@download/ENCFF261UVV.bam released s3://encode-public/2017/03/21/b13e2684-7ead-4edb-abae-1c94adb95ac8/ENCFF261UVV.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF622WHV bam bam unfiltered alignments hg19 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF758OHN/ 2615079156 ENCODE Processing Pipeline ebaf390f48f08c960376d6bb806350c6 https://www.encodeproject.org/files/ENCFF622WHV/@@download/ENCFF622WHV.bam released s3://encode-public/2017/03/21/a958bb07-1310-4f56-b17d-1ecca45928e4/ENCFF622WHV.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF479UZY bam bam unfiltered alignments hg19 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF758OHN/ 2165030202 ENCODE Processing Pipeline c5f8051955f8b75497ea7c49ea8f6c96 https://www.encodeproject.org/files/ENCFF479UZY/@@download/ENCFF479UZY.bam released s3://encode-public/2017/03/22/24293ff0-9a60-441a-9b17-6266b8b96e81/ENCFF479UZY.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF984BBU bam bam alignments hg19 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF758OHN/ 1213760168 ENCODE Processing Pipeline bd8916ca4f1aaf62e1d88ef00e7ef343 https://www.encodeproject.org/files/ENCFF984BBU/@@download/ENCFF984BBU.bam released s3://encode-public/2017/03/22/67543ec2-50f9-4dfb-808f-191f5a52acde/ENCFF984BBU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF806WWU bam bam unfiltered alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF758OHN/ 2180774181 ENCODE Processing Pipeline d274fd57fcf22a8e8abc09e257e8585e https://www.encodeproject.org/files/ENCFF806WWU/@@download/ENCFF806WWU.bam released s3://encode-public/2017/03/22/967799df-bdbc-403b-8345-652cebf0e695/ENCFF806WWU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF259WHE bam bam alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF758OHN/ 1213771924 ENCODE Processing Pipeline 9863fa16ef749bc2e33bcf542a1152a5 https://www.encodeproject.org/files/ENCFF259WHE/@@download/ENCFF259WHE.bam released s3://encode-public/2017/03/22/36e836f9-87dd-44f8-900b-1d639517bd23/ENCFF259WHE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF949HIW bam bam alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF758OHN/, /files/ENCFF110MCL/ 1726785857 ENCODE Processing Pipeline 4f33123206d59d63b8344d64f8cabc19 https://www.encodeproject.org/files/ENCFF949HIW/@@download/ENCFF949HIW.bam released s3://encode-public/2020/10/08/8da97e7b-66eb-428c-a55a-191c6f9506f4/ENCFF949HIW.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF097MZH bam bam unfiltered alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF758OHN/, /files/ENCFF110MCL/ 2116817461 ENCODE Processing Pipeline e126629f305c6626b0bda9a5b15ae3b4 https://www.encodeproject.org/files/ENCFF097MZH/@@download/ENCFF097MZH.bam released s3://encode-public/2020/12/10/83a0fffd-f49c-4a59-9957-15664e100bd0/ENCFF097MZH.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking ENCFF105HLY bam bam alignments GRCh38 ENCSR059QYS Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF758OHN/, /files/ENCFF110MCL/ 1352446898 ENCODE Processing Pipeline 1610a5e18dbea0c387e7188d74fc9369 https://www.encodeproject.org/files/ENCFF105HLY/@@download/ENCFF105HLY.bam released s3://encode-public/2020/12/10/63ae6fe4-2f3e-408b-92a5-3378a2ce6a83/ENCFF105HLY.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking ENCFF069TUA fastq fastq reads ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF886JJC/ 2894231208 Michael Snyder, Stanford 7538c68c3e05d92d6f735b4f7370c930 SRA:SRR5111477 https://www.encodeproject.org/files/ENCFF069TUA/@@download/ENCFF069TUA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/b12890d6-396c-456f-a23d-3ec5934038ba/ENCFF069TUA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF886JJC fastq fastq reads ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF069TUA/ 2944384356 Michael Snyder, Stanford 81ea9b1b8a700053201945b96009b235 SRA:SRR5111477 https://www.encodeproject.org/files/ENCFF886JJC/@@download/ENCFF886JJC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/562ed79e-4313-4895-8e60-941500120371/ENCFF886JJC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF329ZGY bam bam alignments GRCh38 ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF069TUA/, /files/ENCFF886JJC/, /files/ENCFF643CGH/ 5035965862 ENCODE Processing Pipeline 938096127066fe0e30454df80abde1be https://www.encodeproject.org/files/ENCFF329ZGY/@@download/ENCFF329ZGY.bam released s3://encode-public/2016/09/11/e7ef5aff-6308-4d14-b5a8-a8cf09c6fd8d/ENCFF329ZGY.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF258CUW bam bam unfiltered alignments hg19 ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF069TUA/, /files/ENCFF886JJC/, /files/ENCFF807MUK/ 5911705766 ENCODE Processing Pipeline 6d903df1d5771c2473fd7b1a8a98c47f https://www.encodeproject.org/files/ENCFF258CUW/@@download/ENCFF258CUW.bam released s3://encode-public/2016/09/11/49a680c6-aa86-4adf-81a0-270e8f6039e8/ENCFF258CUW.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF243IQR bam bam unfiltered alignments GRCh38 ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF069TUA/, /files/ENCFF886JJC/, /files/ENCFF643CGH/ 5919867878 ENCODE Processing Pipeline 00f0f1aa6602a7298dfd346901733f6b https://www.encodeproject.org/files/ENCFF243IQR/@@download/ENCFF243IQR.bam released s3://encode-public/2016/09/11/de97b7f5-d762-44d3-b89b-8133252c4c2e/ENCFF243IQR.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF360YNH bam bam alignments hg19 ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF069TUA/, /files/ENCFF886JJC/, /files/ENCFF807MUK/ 5033438095 ENCODE Processing Pipeline a5374bd55c9debd75f54b2998b6df6b2 https://www.encodeproject.org/files/ENCFF360YNH/@@download/ENCFF360YNH.bam released s3://encode-public/2016/09/11/8ef6aa96-16a2-4189-9774-fa18711b6c2e/ENCFF360YNH.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF736OSY bam bam alignments GRCh38 ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF069TUA/, /files/ENCFF886JJC/ 5093736455 ENCODE Processing Pipeline 6f546e8afd72ced834fbd46cffaf5107 https://www.encodeproject.org/files/ENCFF736OSY/@@download/ENCFF736OSY.bam released s3://encode-public/2020/06/02/b681b0a8-0036-45c3-9f7e-f3275008596d/ENCFF736OSY.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF368MBV bam bam unfiltered alignments GRCh38 ENCSR361UQO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF069TUA/, /files/ENCFF886JJC/ 5993672651 ENCODE Processing Pipeline 75b7fe893283913c5cc8bbbcc9c031d7 https://www.encodeproject.org/files/ENCFF368MBV/@@download/ENCFF368MBV.bam released s3://encode-public/2020/06/02/975511ed-51e5-446d-b41b-b44c3565a56b/ENCFF368MBV.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF271LTA bam bam alignments GRCh38 ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF630OOC/, /files/ENCFF874IPA/, /files/ENCFF110MCL/ 1896255442 ENCODE Processing Pipeline 8717611a49bf61e53586f56060d45e3b https://www.encodeproject.org/files/ENCFF271LTA/@@download/ENCFF271LTA.bam released s3://encode-public/2020/10/08/55b97a4a-05db-47ee-ba75-13254ec3c4fa/ENCFF271LTA.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF874IPA fastq fastq reads ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 894335497 Zhiping Weng, UMass c93bb3dc596ef50ee34087538e83d2ae SRA:SRR787508 https://www.encodeproject.org/files/ENCFF874IPA/@@download/ENCFF874IPA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/124bef89-4bc2-4cfe-9281-cb9610639408/ENCFF874IPA.fastq.gz low read length ENCFF630OOC fastq fastq reads ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 single-ended 1135720626 Zhiping Weng, UMass ec7af921ef7e8fdf5ed5f1b953877d00 SRA:SRR787509 https://www.encodeproject.org/files/ENCFF630OOC/@@download/ENCFF630OOC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/3b1f7a5f-ff12-4896-a3a4-1c08a6797f4b/ENCFF630OOC.fastq.gz low read length ENCFF240VHQ bam bam unfiltered alignments GRCh38 ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF630OOC/, /files/ENCFF874IPA/ 2527553209 ENCODE Processing Pipeline 0b3676f317ad41e097910227fd81b166 https://www.encodeproject.org/files/ENCFF240VHQ/@@download/ENCFF240VHQ.bam released s3://encode-public/2016/12/19/bfe818eb-a5ac-4cf1-be74-37ad057b9005/ENCFF240VHQ.bam ENCODE3 GRCh38 archived low read length ENCFF893RRF bam bam unfiltered alignments hg19 ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF630OOC/, /files/ENCFF874IPA/ 2512398680 ENCODE Processing Pipeline bf4343f8baeab48005eaa331c2e13d2b https://www.encodeproject.org/files/ENCFF893RRF/@@download/ENCFF893RRF.bam released s3://encode-public/2016/12/19/bbac3063-296d-4ff5-ae66-1d5e11dc166c/ENCFF893RRF.bam ENCODE3 hg19 archived low read length ENCFF051OXL bam bam alignments hg19 ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF807MUK/, /files/ENCFF630OOC/, /files/ENCFF874IPA/ 1749642421 ENCODE Processing Pipeline 4d35a65b413072098ec52eded82d4fbf https://www.encodeproject.org/files/ENCFF051OXL/@@download/ENCFF051OXL.bam released s3://encode-public/2016/12/19/4f66c889-d641-4420-ae37-5b5f9ff9ae70/ENCFF051OXL.bam ENCODE3 hg19 archived low read length ENCFF170NIZ bam bam alignments GRCh38 ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF643CGH/, /files/ENCFF630OOC/, /files/ENCFF874IPA/ 1749249168 ENCODE Processing Pipeline 5a090962dba455b0eb4b939fd15e40f4 https://www.encodeproject.org/files/ENCFF170NIZ/@@download/ENCFF170NIZ.bam released s3://encode-public/2016/12/19/1a29d8ff-1eba-4397-9d46-5b7fcc86e8c5/ENCFF170NIZ.bam ENCODE3 GRCh38 archived low read length ENCFF036LTM bam bam unfiltered alignments GRCh38 ENCSR074WNF Control ChIP-seq /human-donors/ENCDO190HXC/ CL:0000624 CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF630OOC/, /files/ENCFF874IPA/, /files/ENCFF110MCL/ 2456926176 ENCODE Processing Pipeline 7a2ce0f47c22536f787262a87d7b7a7a https://www.encodeproject.org/files/ENCFF036LTM/@@download/ENCFF036LTM.bam released s3://encode-public/2020/10/08/264253c3-d06b-4208-a195-47c2339d5842/ENCFF036LTM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF877SGG fastq fastq reads ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF332OUJ/ 2502856370 Richard Myers, HAIB 43fe8445e90baa32fa9c90b27d9bbfd4 SRA:SRR6213935 https://www.encodeproject.org/files/ENCFF877SGG/@@download/ENCFF877SGG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/6f3f2db6-39c3-429d-969f-92a64d8f64ea/ENCFF877SGG.fastq.gz ENCFF332OUJ fastq fastq reads ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF877SGG/ 2613595754 Richard Myers, HAIB e2d3977e44006500cb4475d8ef0e86d8 SRA:SRR6213935 https://www.encodeproject.org/files/ENCFF332OUJ/@@download/ENCFF332OUJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/b13e24f9-8689-45b3-af23-d1e87f1c9e59/ENCFF332OUJ.fastq.gz ENCFF144QHN bam bam unfiltered alignments GRCh38 ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF877SGG/, /files/ENCFF332OUJ/, /files/ENCFF643CGH/ 6181950590 ENCODE Processing Pipeline 4c526ad151954f2722fd71e042be64e6 https://www.encodeproject.org/files/ENCFF144QHN/@@download/ENCFF144QHN.bam released s3://encode-public/2016/11/08/0688e589-c9c7-401b-a2f0-f7c119c0bf97/ENCFF144QHN.bam ENCODE3 GRCh38 archived ENCFF015ZIM bam bam unfiltered alignments hg19 ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF877SGG/, /files/ENCFF332OUJ/, /files/ENCFF807MUK/ 6155099291 ENCODE Processing Pipeline 14e3041e18afae64b602c04fdeaa70b5 https://www.encodeproject.org/files/ENCFF015ZIM/@@download/ENCFF015ZIM.bam released s3://encode-public/2016/11/08/0befd028-6465-4db3-8282-46db6b5f5d0d/ENCFF015ZIM.bam ENCODE3 hg19 archived ENCFF898FGD bam bam alignments hg19 ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF877SGG/, /files/ENCFF332OUJ/, /files/ENCFF807MUK/ 4476499486 ENCODE Processing Pipeline f476792759e57e96e672674da8c84a55 https://www.encodeproject.org/files/ENCFF898FGD/@@download/ENCFF898FGD.bam released s3://encode-public/2016/11/08/7181321c-7b19-45ce-aebb-b52702c66d3d/ENCFF898FGD.bam ENCODE3 hg19 archived ENCFF248TLI bam bam alignments GRCh38 ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF877SGG/, /files/ENCFF332OUJ/, /files/ENCFF643CGH/ 4484198894 ENCODE Processing Pipeline 452404a24e6948bdb304b3b227fd8a03 https://www.encodeproject.org/files/ENCFF248TLI/@@download/ENCFF248TLI.bam released s3://encode-public/2016/11/08/bf71e030-f3fd-4dd5-91b2-f899df2cf75b/ENCFF248TLI.bam ENCODE3 GRCh38 archived ENCFF538VGM bam bam unfiltered alignments GRCh38 ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF332OUJ/, /files/ENCFF877SGG/, /files/ENCFF110MCL/ 6150970632 ENCODE Processing Pipeline be3b29e58fedc8a15ed7658103ba8143 https://www.encodeproject.org/files/ENCFF538VGM/@@download/ENCFF538VGM.bam released s3://encode-public/2020/06/24/4dfa0778-e123-41e7-a263-70c8201e9a2b/ENCFF538VGM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF558WLL bam bam alignments GRCh38 ENCSR804FRO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF332OUJ/, /files/ENCFF877SGG/, /files/ENCFF110MCL/ 4259977987 ENCODE Processing Pipeline c3eb5eda30a029f5841b7c95c88323ca https://www.encodeproject.org/files/ENCFF558WLL/@@download/ENCFF558WLL.bam released s3://encode-public/2020/06/24/a7c767fc-447d-4d28-a54b-4a1615d277e0/ENCFF558WLL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF337NMZ fastq fastq reads ENCSR500VBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} hg19 5 178165941 178337239 DNA 2017-02-13 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF437UBY/ 2712772633 Michael Snyder, Stanford 43297e695a55e7fd25834c3ae01f27c0 SRA:SRR6213053 https://www.encodeproject.org/files/ENCFF337NMZ/@@download/ENCFF337NMZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/08/8993265e-8a12-4c20-ba1d-99610d62718e/ENCFF337NMZ.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF437UBY fastq fastq reads ENCSR500VBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} hg19 5 178165941 178337239 DNA 2017-02-13 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF337NMZ/ 2363995777 Michael Snyder, Stanford 961a38e7098c146439df93df910ce89c SRA:SRR6213053 https://www.encodeproject.org/files/ENCFF437UBY/@@download/ENCFF437UBY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/08/563caa47-78b4-4c40-8c96-8404b4c27c3d/ENCFF437UBY.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF725LRI bam bam unfiltered alignments hg19 ENCSR500VBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} hg19 5 178165941 178337239 DNA 2017-02-13 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF337NMZ/, /files/ENCFF437UBY/ 4802749993 ENCODE Processing Pipeline 81290ebb8fdf8a2c20a2d2b640a0542d https://www.encodeproject.org/files/ENCFF814ZGP/@@download/ENCFF814ZGP.bam released s3://encode-public/2017/02/09/5aa2b02d-c72d-49f5-aa1d-0a93004a63a2/ENCFF814ZGP.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF874TOY bam bam alignments GRCh38 ENCSR500VBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} hg19 5 178165941 178337239 DNA 2017-02-13 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF337NMZ/, /files/ENCFF437UBY/ 3545518025 ENCODE Processing Pipeline 16dd8b26460da197985d229d1301c3a1 https://www.encodeproject.org/files/ENCFF874TOY/@@download/ENCFF874TOY.bam released s3://encode-public/2017/02/09/e31dba66-6bab-42f8-838c-ee69b188042e/ENCFF874TOY.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF127KUO bam bam alignments hg19 ENCSR500VBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} hg19 5 178165941 178337239 DNA 2017-02-13 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF337NMZ/, /files/ENCFF437UBY/ 3540703354 ENCODE Processing Pipeline bdf13bc298c027fc927412b0a74baf63 https://www.encodeproject.org/files/ENCFF127KUO/@@download/ENCFF127KUO.bam released s3://encode-public/2017/02/09/11a25536-1b21-4957-a1d0-3a273ef16f77/ENCFF127KUO.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF606QKA bam bam unfiltered alignments GRCh38 ENCSR500VBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} hg19 5 178165941 178337239 DNA 2017-02-13 ENCODE 1 1_1 100 /files/ENCFF337NMZ/, /files/ENCFF437UBY/, /files/ENCFF110MCL/ 4804096713 ENCODE Processing Pipeline 032745da38b258bee301fd5e5e62efb6 https://www.encodeproject.org/files/ENCFF606QKA/@@download/ENCFF606QKA.bam released s3://encode-public/2020/10/28/5202eb45-56ea-441f-9817-c8a7dc0a406f/ENCFF606QKA.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF094PYH bam bam alignments GRCh38 ENCSR500VBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} hg19 5 178165941 178337239 DNA 2017-02-13 ENCODE 1 1_1 100 /files/ENCFF337NMZ/, /files/ENCFF437UBY/, /files/ENCFF110MCL/ 3454857423 ENCODE Processing Pipeline 5f29a9818140856142a2eedb80cdb5c4 https://www.encodeproject.org/files/ENCFF094PYH/@@download/ENCFF094PYH.bam released s3://encode-public/2020/10/28/b907b685-7a47-4368-b523-6c426bce0a6f/ENCFF094PYH.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF894OSF tagAlign tagAlign alignments hg19 ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF584ZBK/ 133863867 Anshul Kundaje, Stanford 871b7d5555cf13895425ca66a27ac544 https://www.encodeproject.org/files/ENCFF894OSF/@@download/ENCFF894OSF.tagAlign.gz archived s3://encode-public/2016/03/30/5e9dfe28-4b24-4204-a8d3-07297a3f045a/ENCFF894OSF.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF673FUU bam bam alignments GRCh38 ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF584ZBK/, /files/ENCFF110MCL/ 766581057 ENCODE Processing Pipeline 19384a085d054f5eb2509055d3a1a456 https://www.encodeproject.org/files/ENCFF673FUU/@@download/ENCFF673FUU.bam released s3://encode-public/2020/10/08/a3603c7c-d2f2-4b6a-b819-3191aa186f7c/ENCFF673FUU.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF584ZBK fastq fastq reads ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 769209730 Zhiping Weng, UMass 24a9da2bec061a4ed8ff24692f9f377b SRA:SRR179700 https://www.encodeproject.org/files/ENCFF584ZBK/@@download/ENCFF584ZBK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/11/17/60874ad7-3e50-4a7d-8904-d2cdf3d5c4a4/ENCFF584ZBK.fastq.gz low read depth, low read length ENCFF045OWY bam bam unfiltered alignments GRCh38 ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF584ZBK/ 970461193 ENCODE Processing Pipeline d8fc15695647738be57a23ea2f5b9f04 https://www.encodeproject.org/files/ENCFF045OWY/@@download/ENCFF045OWY.bam released s3://encode-public/2016/12/19/32a1f1d7-ccf3-4c6b-abb9-980a61a8deca/ENCFF045OWY.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF698OXG bam bam alignments GRCh38 ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF584ZBK/ 717169550 ENCODE Processing Pipeline 1227a9205e992e3c794d719f216925de https://www.encodeproject.org/files/ENCFF698OXG/@@download/ENCFF698OXG.bam released s3://encode-public/2016/12/19/c8b76a8a-707a-4ac8-99bc-01a54aaee10b/ENCFF698OXG.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF151DCP bam bam unfiltered alignments hg19 ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF584ZBK/ 966979329 ENCODE Processing Pipeline d1af31a5af378e6ea4745ecb1544acb8 https://www.encodeproject.org/files/ENCFF151DCP/@@download/ENCFF151DCP.bam released s3://encode-public/2016/12/19/f1e016e5-2969-41e4-905e-bdcd1d141d09/ENCFF151DCP.bam ENCODE3 hg19 archived low read depth, low read length ENCFF791ERS bam bam alignments hg19 ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF584ZBK/ 717369914 ENCODE Processing Pipeline 072544cc4c797d08006c3d2ea80b5466 https://www.encodeproject.org/files/ENCFF791ERS/@@download/ENCFF791ERS.bam released s3://encode-public/2016/12/19/9af93242-7588-4608-a939-2092d13b4849/ENCFF791ERS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF199XJD bam bam unfiltered alignments GRCh38 ENCSR680APM Control ChIP-seq /human-donors/ENCDO592CQV/ EFO:0007096 iPS DF 19.11 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF584ZBK/, /files/ENCFF110MCL/ 954087519 ENCODE Processing Pipeline 8388413e9713dc6aef1d723f9e26dc9c https://www.encodeproject.org/files/ENCFF199XJD/@@download/ENCFF199XJD.bam released s3://encode-public/2020/10/08/ef79d079-07d8-47dc-a038-d60d1e5ff9fc/ENCFF199XJD.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF963TEZ fastq fastq reads ENCSR138PGW Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-05 ENCODE see document 1 1_1 50 single-ended 951483364 Richard Myers, HAIB 66f1e1da2e89959964b0c278d4f19dc5 SRA:SRR5331300 https://www.encodeproject.org/files/ENCFF963TEZ/@@download/ENCFF963TEZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/09/09/0ee6eb2b-8e1b-4a61-8647-ade00709d956/ENCFF963TEZ.fastq.gz ENCFF723SBW bam bam unfiltered alignments hg19 ENCSR138PGW Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-05 ENCODE see document 1 1_1 50 /files/ENCFF963TEZ/, /files/ENCFF807MUK/ 1083723278 ENCODE Processing Pipeline 0e527ce74c9a047b8d7e2ecc9388ffb5 https://www.encodeproject.org/files/ENCFF723SBW/@@download/ENCFF723SBW.bam released s3://encode-public/2016/09/19/53f4be9c-8678-4b69-ae44-a50f9446987d/ENCFF723SBW.bam ENCODE3 hg19 archived ENCFF254WCJ bam bam unfiltered alignments GRCh38 ENCSR138PGW Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-05 ENCODE see document 1 1_1 50 /files/ENCFF963TEZ/, /files/ENCFF643CGH/ 1086749601 ENCODE Processing Pipeline 366a8e8e16dd75818b373dda9fd11822 https://www.encodeproject.org/files/ENCFF254WCJ/@@download/ENCFF254WCJ.bam released s3://encode-public/2016/09/19/98e6fa23-3a52-491e-bb8a-5ef15ea15beb/ENCFF254WCJ.bam ENCODE3 GRCh38 archived ENCFF802YSD bam bam alignments GRCh38 ENCSR138PGW Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-05 ENCODE see document 1 1_1 50 /files/ENCFF963TEZ/, /files/ENCFF643CGH/ 852211999 ENCODE Processing Pipeline a04c21ca6b63202fae58fb245cb0c334 https://www.encodeproject.org/files/ENCFF802YSD/@@download/ENCFF802YSD.bam released s3://encode-public/2016/09/19/91c179e3-f24a-4e9d-b752-51052381691e/ENCFF802YSD.bam ENCODE3 GRCh38 archived ENCFF876ZSM bam bam alignments hg19 ENCSR138PGW Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-05 ENCODE see document 1 1_1 50 /files/ENCFF963TEZ/, /files/ENCFF807MUK/ 852136048 ENCODE Processing Pipeline 56d3243fb31014bc50f71a543bd5f21b https://www.encodeproject.org/files/ENCFF876ZSM/@@download/ENCFF876ZSM.bam released s3://encode-public/2016/09/19/7aa9bd57-0b66-4de7-bd75-c895a4fdbf33/ENCFF876ZSM.bam ENCODE3 hg19 archived ENCFF310BUT bam bam unfiltered alignments GRCh38 ENCSR138PGW Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-05 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF963TEZ/ 1078394811 ENCODE Processing Pipeline 5cb800cfdbfb9121e81568b11029490b https://www.encodeproject.org/files/ENCFF310BUT/@@download/ENCFF310BUT.bam released s3://encode-public/2020/06/06/4b9a5a2d-fb93-4c08-9457-a9c1f0825033/ENCFF310BUT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF366SUL bam bam alignments GRCh38 ENCSR138PGW Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day DNA 2016-10-05 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF963TEZ/ 873194635 ENCODE Processing Pipeline 53d40d95649b25af99b9db33ad7a1528 https://www.encodeproject.org/files/ENCFF366SUL/@@download/ENCFF366SUL.bam released s3://encode-public/2020/06/06/0cfb8ad1-cd44-4e46-9f69-24ec4b4009a5/ENCFF366SUL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF380HNN fastq fastq reads ENCSR257XAX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2021-02-25 ENCODE sonication (generic) 1 1_1 100 single-ended 2592946564 Richard Myers, HAIB bcd3c42c71456da33135f25fdc11a11e SRA:SRR14103681 https://www.encodeproject.org/files/ENCFF380HNN/@@download/ENCFF380HNN.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/02/10/d4340ce6-f44d-47ae-88f0-e4d82cc53c9a/ENCFF380HNN.fastq.gz ENCFF555RMB bam bam unfiltered alignments GRCh38 ENCSR257XAX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2021-02-25 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF380HNN/ 2656551429 ENCODE Processing Pipeline 9618b0b6ae4bbbbdba4f63b5a4a2b499 https://www.encodeproject.org/files/ENCFF555RMB/@@download/ENCFF555RMB.bam released s3://encode-public/2021/02/11/c0f295a8-40a5-4cfd-9951-967dbbcb4724/ENCFF555RMB.bam ENCODE4 v1.7.0 GRCh38 released ENCFF881WYK bam bam alignments GRCh38 ENCSR257XAX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2021-02-25 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF380HNN/ 1484298742 ENCODE Processing Pipeline 7376655c5361f15937cecd6c52266ca0 https://www.encodeproject.org/files/ENCFF881WYK/@@download/ENCFF881WYK.bam released s3://encode-public/2021/02/11/921f919f-ae63-4f75-87ac-3ac7dcf5c3ab/ENCFF881WYK.bam ENCODE4 v1.7.0 GRCh38 released ENCFF328QHK fastq fastq reads ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1565784937 Bradley Bernstein, Broad 17cc5ee030285e4db0bcb78ebb63777a SRA:SRR5832786 https://www.encodeproject.org/files/ENCFF328QHK/@@download/ENCFF328QHK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/e69eaee8-e504-4d07-8b1f-181a90179c3c/ENCFF328QHK.fastq.gz ENCFF429SOB fastq fastq reads ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1537123278 Bradley Bernstein, Broad f86e37ef52ea35022d3a3741a41adcb6 SRA:SRR5832787 https://www.encodeproject.org/files/ENCFF429SOB/@@download/ENCFF429SOB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/453b5e68-37ee-4b8d-98a9-8be2ef8d843f/ENCFF429SOB.fastq.gz ENCFF080FPV bam bam unfiltered alignments GRCh38 ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF328QHK/, /files/ENCFF429SOB/ 2993510562 ENCODE Processing Pipeline 8473cfcc5145569e7aa9ca6a6ce125ab https://www.encodeproject.org/files/ENCFF080FPV/@@download/ENCFF080FPV.bam released s3://encode-public/2016/10/27/897f639e-11c6-4084-9e45-0c53c5da0eba/ENCFF080FPV.bam ENCODE3 GRCh38 archived ENCFF309AYX bam bam unfiltered alignments hg19 ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF328QHK/, /files/ENCFF429SOB/ 2984827694 ENCODE Processing Pipeline 4626dd9770aed1f1adf6f8070b4cd8bc https://www.encodeproject.org/files/ENCFF309AYX/@@download/ENCFF309AYX.bam released s3://encode-public/2016/10/27/4c05af78-f37f-4530-970d-560ee51a7af7/ENCFF309AYX.bam ENCODE3 hg19 archived ENCFF163YFX bam bam alignments GRCh38 ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF328QHK/, /files/ENCFF429SOB/ 2534434862 ENCODE Processing Pipeline 41694ec21dd67d09a15dafabc2459cb2 https://www.encodeproject.org/files/ENCFF163YFX/@@download/ENCFF163YFX.bam released s3://encode-public/2016/10/27/02f41bf5-455b-49b0-99f3-29211da7991c/ENCFF163YFX.bam ENCODE3 GRCh38 archived ENCFF815LXM bam bam alignments hg19 ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF328QHK/, /files/ENCFF429SOB/ 2530907958 ENCODE Processing Pipeline 9e27ac24b43264a0b0eea05ba26b08bc https://www.encodeproject.org/files/ENCFF815LXM/@@download/ENCFF815LXM.bam released s3://encode-public/2016/10/27/594b2f72-f623-4f6d-ac17-f912a66be7a2/ENCFF815LXM.bam ENCODE3 hg19 archived ENCFF430OFG bam bam alignments GRCh38 ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF328QHK/, /files/ENCFF429SOB/ 2597718715 ENCODE Processing Pipeline 6988df27bfa3b33ba4a8d2b8cd9c33da https://www.encodeproject.org/files/ENCFF430OFG/@@download/ENCFF430OFG.bam released s3://encode-public/2020/08/06/270cd2ec-fc04-4b94-b0f0-dd89510d39d8/ENCFF430OFG.bam ENCODE4 GRCh38 released ENCFF963EHQ bam bam unfiltered alignments GRCh38 ENCSR422TGJ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF328QHK/, /files/ENCFF429SOB/ 3026888605 ENCODE Processing Pipeline a0672134a36b6c63f4d98ea4ece12afa https://www.encodeproject.org/files/ENCFF963EHQ/@@download/ENCFF963EHQ.bam released s3://encode-public/2020/08/06/34390599-b406-487b-bb6b-df0f91c34ba3/ENCFF963EHQ.bam ENCODE4 GRCh38 released ENCFF730IEL fastq fastq reads ENCSR668TPK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 612746351 Kevin White, UChicago 96c76f08f385d30998348538828feeb3 https://www.encodeproject.org/files/ENCFF730IEL/@@download/ENCFF730IEL.fastq.gz Illumina HiSeq 4000 /files/ENCFF023MBN/ released s3://encode-public/2018/09/18/3926b6a0-6c20-4d7c-a22e-545258a35498/ENCFF730IEL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF154MKU bam bam alignments dm6 ENCSR668TPK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF730IEL/, /files/ENCFF479RCH/ 807298642 Kevin White, UChicago 3b34972c0de2d394e606a4f167c55039 https://www.encodeproject.org/files/ENCFF154MKU/@@download/ENCFF154MKU.bam released s3://encode-public/2018/09/19/196c4854-01c3-46d7-b1fe-8ed2d38deaf1/ENCFF154MKU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF416ULY bigWig bigWig signal of unique reads dm6 ENCSR668TPK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF154MKU/ 17669704 Kevin White, UChicago dd17a68601cf441a098ebfc59a938cde https://www.encodeproject.org/files/ENCFF416ULY/@@download/ENCFF416ULY.bigWig released s3://encode-public/2018/09/19/9564699a-a276-4485-b466-2a3cbc267447/ENCFF416ULY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF127MVC bigWig bigWig read-depth normalized signal dm6 ENCSR668TPK Control ChIP-seq /fly-donors/ENCDO269BCO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/47763/'], '@type': ['Target', 'Item'], 'name': 'Abd-B-dmelanogaster', 'label': 'Abd-B', '@id': '/targets/Abd-B-dmelanogaster/', 'title': 'Abd-B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '372371a6-ec1b-4b81-9152-7970965fe330', 'status': 'released'} dm3 3R 12749382 12848402 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF154MKU/ 17696810 Kevin White, UChicago 6b015a0767ba048be06506530f97fb9c https://www.encodeproject.org/files/ENCFF127MVC/@@download/ENCFF127MVC.bigWig released s3://encode-public/2018/09/19/403da1a8-d1d0-436e-84bc-ae357a8d026c/ENCFF127MVC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF502LCH fastq fastq reads ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF055BVM/ 3400495851 Michael Snyder, Stanford 37dfaa63deb656e3971ce62493d875a0 SRA:SRR5112447 https://www.encodeproject.org/files/ENCFF502LCH/@@download/ENCFF502LCH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/fee33f53-eb23-4b79-9c66-7dfbd8e39e6c/ENCFF502LCH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF055BVM fastq fastq reads ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF502LCH/ 3347593963 Michael Snyder, Stanford dd02bfa167e382206f9fc9bc5a4b02a8 SRA:SRR5112447 https://www.encodeproject.org/files/ENCFF055BVM/@@download/ENCFF055BVM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/4217b7f4-79ed-4022-8b99-599cab78532f/ENCFF055BVM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF245WXO bam bam unfiltered alignments hg19 ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF055BVM/, /files/ENCFF502LCH/ 6837940753 ENCODE Processing Pipeline 50c41d000490e6b26156056c6b7ac9bc https://www.encodeproject.org/files/ENCFF245WXO/@@download/ENCFF245WXO.bam released s3://encode-public/2016/09/11/d4b3d46b-b90d-4958-be88-f335f84b3d02/ENCFF245WXO.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF297IVV bam bam unfiltered alignments GRCh38 ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF055BVM/, /files/ENCFF502LCH/ 6847627709 ENCODE Processing Pipeline 68a2ea4c9b6d6c2f5308cbe8b3622802 https://www.encodeproject.org/files/ENCFF297IVV/@@download/ENCFF297IVV.bam released s3://encode-public/2016/09/11/3cf5a6be-a235-4a06-be76-339766534b76/ENCFF297IVV.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF058YRS bam bam alignments hg19 ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF055BVM/, /files/ENCFF502LCH/ 5754816855 ENCODE Processing Pipeline 4ac591c9d8a82fded664c77cbf745d50 https://www.encodeproject.org/files/ENCFF058YRS/@@download/ENCFF058YRS.bam released s3://encode-public/2016/09/11/0f9f9361-b46d-40f3-98a5-6f018da327f2/ENCFF058YRS.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF349AUS bam bam alignments GRCh38 ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF055BVM/, /files/ENCFF502LCH/ 5757978720 ENCODE Processing Pipeline d2c215fad07c3021b1cf799a75cd68cd https://www.encodeproject.org/files/ENCFF349AUS/@@download/ENCFF349AUS.bam released s3://encode-public/2016/09/11/f72579f1-7f6f-4c95-9c67-8ad33ba31b97/ENCFF349AUS.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF717AJQ bam bam unfiltered alignments GRCh38 ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF055BVM/, /files/ENCFF502LCH/ 6941152788 ENCODE Processing Pipeline 0852241b68f20eaeb4cdd1b6dfe23405 https://www.encodeproject.org/files/ENCFF717AJQ/@@download/ENCFF717AJQ.bam released s3://encode-public/2020/06/02/c5033562-7758-4d74-a75e-c24a94787f78/ENCFF717AJQ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF383QIP bam bam alignments GRCh38 ENCSR049NDP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-843'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/137209/'], '@type': ['Target', 'Item'], 'name': 'ZNF572-human', 'label': 'ZNF572', '@id': '/targets/ZNF572-human/', 'title': 'ZNF572 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad740b19-db21-4538-ad29-3ed42e5fe0be', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF055BVM/, /files/ENCFF502LCH/ 5839879104 ENCODE Processing Pipeline 3592cf79d063754eebe8bb19bfe8cab1 https://www.encodeproject.org/files/ENCFF383QIP/@@download/ENCFF383QIP.bam released s3://encode-public/2020/06/02/089349a6-273d-4dfb-b7da-6a07b72fbe3b/ENCFF383QIP.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF165HUG tagAlign tagAlign alignments hg19 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/ENCFF272HWA/, /files/ENCFF956KYS/, /files/ENCFF740CFC/ 65119987 Anshul Kundaje, Stanford f8c145bd24abc9a054e91c30abaa2934 https://www.encodeproject.org/files/ENCFF165HUG/@@download/ENCFF165HUG.tagAlign.gz archived s3://encode-public/2016/05/02/9c094d15-629e-487a-981b-1a7c72864068/ENCFF165HUG.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF675VKE tagAlign tagAlign alignments hg19 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF855STX/ 35169737 Anshul Kundaje, Stanford c3907e4b635bff0214d4bb45f20c17a1 https://www.encodeproject.org/files/ENCFF675VKE/@@download/ENCFF675VKE.tagAlign.gz archived s3://encode-public/2016/05/02/a76103b9-3f13-41dc-9e2a-8c7477af4a1d/ENCFF675VKE.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF956KYS fastq fastq reads ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 343530732 Zhiping Weng, UMass af3f943858eb54ff9fbe322abdad2502 SRA:SRR037634 https://www.encodeproject.org/files/ENCFF956KYS/@@download/ENCFF956KYS.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/11/f2715161-a4d3-4598-ba3c-ed27ee8574d7/ENCFF956KYS.fastq.gz low read depth, low read length ENCFF855STX fastq fastq reads ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 427265601 Zhiping Weng, UMass 15c7f91d4aa77dc39fddd6d8dc9cdeac SRA:SRR037637 https://www.encodeproject.org/files/ENCFF855STX/@@download/ENCFF855STX.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/11/60e494de-4b1a-42df-998d-9753a440b012/ENCFF855STX.fastq.gz low read depth, low read length ENCFF740CFC fastq fastq reads ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 356241137 Zhiping Weng, UMass 5710a0beff8aca580ba859137c15bc1b SRA:SRR037635 https://www.encodeproject.org/files/ENCFF740CFC/@@download/ENCFF740CFC.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/4215028d-c2cb-46cf-81cc-7522137eb073/ENCFF740CFC.fastq.gz low read depth, low read length ENCFF272HWA fastq fastq reads ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 268913846 Zhiping Weng, UMass be48ca4fa3d7d729b97a26ee3a95afd8 SRA:SRR037636 https://www.encodeproject.org/files/ENCFF272HWA/@@download/ENCFF272HWA.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/c84c5f66-7b07-494c-8ae1-8ed31edbf692/ENCFF272HWA.fastq.gz low read depth, low read length ENCFF875MMD bam bam unfiltered alignments hg19 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_3 36 /files/ENCFF956KYS/, /files/ENCFF740CFC/, /files/ENCFF807MUK/, /files/ENCFF272HWA/, /files/ENCFF855STX/ 1531995194 ENCODE Processing Pipeline 725645b36bf16cedec39e8320ba136a4 https://www.encodeproject.org/files/ENCFF875MMD/@@download/ENCFF875MMD.bam released s3://encode-public/2017/02/28/170c181e-9666-40f0-99a0-a156e368a811/ENCFF875MMD.bam ENCODE3 hg19 archived low read depth, low read length ENCFF841PLU bam bam alignments GRCh38 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_3 36 /files/ENCFF956KYS/, /files/ENCFF740CFC/, /files/ENCFF643CGH/, /files/ENCFF272HWA/, /files/ENCFF855STX/ 533208220 ENCODE Processing Pipeline a4b0962902e5c86518d3346d2e171fdc https://www.encodeproject.org/files/ENCFF841PLU/@@download/ENCFF841PLU.bam released s3://encode-public/2017/02/28/f1f29b1f-0aa2-4fda-abbd-6062cc9cf6a0/ENCFF841PLU.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF387MEO bam bam alignments hg19 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_3 36 /files/ENCFF956KYS/, /files/ENCFF740CFC/, /files/ENCFF807MUK/, /files/ENCFF272HWA/, /files/ENCFF855STX/ 533707892 ENCODE Processing Pipeline a71180bd90760201d4dddf40a2c21cf6 https://www.encodeproject.org/files/ENCFF387MEO/@@download/ENCFF387MEO.bam released s3://encode-public/2017/02/28/667e9120-4027-42bc-bb98-4338e632331f/ENCFF387MEO.bam ENCODE3 hg19 archived low read depth, low read length ENCFF029ISX bam bam unfiltered alignments GRCh38 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_3 36 /files/ENCFF956KYS/, /files/ENCFF740CFC/, /files/ENCFF643CGH/, /files/ENCFF272HWA/, /files/ENCFF855STX/ 1534000941 ENCODE Processing Pipeline 78af818f243b3da96d083cae460507b3 https://www.encodeproject.org/files/ENCFF029ISX/@@download/ENCFF029ISX.bam released s3://encode-public/2017/02/28/9f823e29-3377-4637-bc52-50768a459887/ENCFF029ISX.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF840KJV bam bam unfiltered alignments GRCh38 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_3 36 /files/ENCFF110MCL/, /files/ENCFF740CFC/, /files/ENCFF272HWA/, /files/ENCFF956KYS/, /files/ENCFF855STX/ 1524410194 ENCODE Processing Pipeline 6f1c01b4df8dfac7e315ce5a36010370 https://www.encodeproject.org/files/ENCFF840KJV/@@download/ENCFF840KJV.bam released s3://encode-public/2020/10/08/21e654a2-4551-4a38-b9ea-03c03074b0e3/ENCFF840KJV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF686YSU bam bam alignments GRCh38 ENCSR001BSB Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_3 36 /files/ENCFF110MCL/, /files/ENCFF740CFC/, /files/ENCFF272HWA/, /files/ENCFF956KYS/, /files/ENCFF855STX/ 585192024 ENCODE Processing Pipeline 39cb5c7e510e050f5f8bdc4bd5c31a87 https://www.encodeproject.org/files/ENCFF686YSU/@@download/ENCFF686YSU.bam released s3://encode-public/2020/10/08/6adcbd3f-1960-4ae6-aba9-8cc3d33c9639/ENCFF686YSU.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF881MQW fastq fastq reads ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF231MWC/ 2740831234 Michael Snyder, Stanford ed4c6cc1b8d42767954743c73de674b7 SRA:SRR5111362 https://www.encodeproject.org/files/ENCFF881MQW/@@download/ENCFF881MQW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/943a2d05-281c-4357-b0c0-4799c155a47d/ENCFF881MQW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF231MWC fastq fastq reads ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF881MQW/ 2784523572 Michael Snyder, Stanford e2371dff3cee446c0e18f50c69145c52 SRA:SRR5111362 https://www.encodeproject.org/files/ENCFF231MWC/@@download/ENCFF231MWC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/b0e39fce-6cf6-4864-a76c-309c4e7692ed/ENCFF231MWC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF160FXK bam bam unfiltered alignments hg19 ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF881MQW/, /files/ENCFF231MWC/, /files/ENCFF807MUK/ 5561640966 ENCODE Processing Pipeline c82cb4061ae330fa9d2d0b177f1c38f5 https://www.encodeproject.org/files/ENCFF160FXK/@@download/ENCFF160FXK.bam released s3://encode-public/2016/09/11/a0867f41-58c3-45d3-a8cd-a692dc86e022/ENCFF160FXK.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF453LJV bam bam unfiltered alignments GRCh38 ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF881MQW/, /files/ENCFF231MWC/, /files/ENCFF643CGH/ 5568425831 ENCODE Processing Pipeline e09281bf64a0007714f1681300fafb7c https://www.encodeproject.org/files/ENCFF453LJV/@@download/ENCFF453LJV.bam released s3://encode-public/2016/09/11/8f28b04b-a827-4bc6-855f-41581791a473/ENCFF453LJV.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF717AGX bam bam alignments hg19 ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF881MQW/, /files/ENCFF231MWC/, /files/ENCFF807MUK/ 4774807149 ENCODE Processing Pipeline da55a6cfdd9f041068121fc14cf7f35a https://www.encodeproject.org/files/ENCFF717AGX/@@download/ENCFF717AGX.bam released s3://encode-public/2016/09/11/908715a0-4d97-439d-b403-ded893945474/ENCFF717AGX.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF780ZXF bam bam alignments GRCh38 ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF881MQW/, /files/ENCFF231MWC/, /files/ENCFF643CGH/ 4776469486 ENCODE Processing Pipeline 6e119162ff19522d17e241dea607952f https://www.encodeproject.org/files/ENCFF780ZXF/@@download/ENCFF780ZXF.bam released s3://encode-public/2016/09/11/567c960b-4c25-4789-9696-b68f8c948d64/ENCFF780ZXF.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF669VTO bam bam unfiltered alignments GRCh38 ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF881MQW/, /files/ENCFF231MWC/ 5638833381 ENCODE Processing Pipeline 059672d56dc657050c5d857eaea96fbc https://www.encodeproject.org/files/ENCFF669VTO/@@download/ENCFF669VTO.bam released s3://encode-public/2020/06/02/84a34a55-8dca-43de-8e3f-10ad6fcd60cc/ENCFF669VTO.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF489ERC bam bam alignments GRCh38 ENCSR278MZO Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57167/'], '@type': ['Target', 'Item'], 'name': 'SALL4-human', 'label': 'SALL4', '@id': '/targets/SALL4-human/', 'title': 'SALL4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a3083299-a1c6-48eb-abc1-fd6ab6e630c9', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF881MQW/, /files/ENCFF231MWC/ 4792776370 ENCODE Processing Pipeline 55bc2bad3314c979e58f82b1f5ccbbaa https://www.encodeproject.org/files/ENCFF489ERC/@@download/ENCFF489ERC.bam released s3://encode-public/2020/06/02/d2aea1fb-e6d8-46b9-b7f7-04a62867b8f4/ENCFF489ERC.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF632IYG fastq fastq reads ENCSR840JKR Control ChIP-seq /fly-donors/ENCDO904SOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39549/'], '@type': ['Target', 'Item'], 'name': 'CG17359-dmelanogaster', 'label': 'CG17359', '@id': '/targets/CG17359-dmelanogaster/', 'title': 'CG17359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a8f9a56c-981a-4eda-911c-1ca7d2020983', 'status': 'released'} dm3 3L 13981858 14001183 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1068476731 Kevin White, UChicago e3db84e7d979df5da59ea07bb6608d22 https://www.encodeproject.org/files/ENCFF632IYG/@@download/ENCFF632IYG.fastq.gz Illumina HiSeq 4000 /files/ENCFF932MLY/ released s3://encode-public/2018/09/18/caba997e-14ca-4f8a-9795-ebd2906d90c0/ENCFF632IYG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF151QQQ bam bam alignments dm6 ENCSR840JKR Control ChIP-seq /fly-donors/ENCDO904SOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39549/'], '@type': ['Target', 'Item'], 'name': 'CG17359-dmelanogaster', 'label': 'CG17359', '@id': '/targets/CG17359-dmelanogaster/', 'title': 'CG17359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a8f9a56c-981a-4eda-911c-1ca7d2020983', 'status': 'released'} dm3 3L 13981858 14001183 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF632IYG/, /files/ENCFF479RCH/ 1434249851 Kevin White, UChicago ae1f3e80bcf88fd7d278759feff06c65 https://www.encodeproject.org/files/ENCFF151QQQ/@@download/ENCFF151QQQ.bam released s3://encode-public/2018/09/19/2646876b-411a-4735-a0be-4543376b1cd7/ENCFF151QQQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF984GCX bigWig bigWig signal of unique reads dm6 ENCSR840JKR Control ChIP-seq /fly-donors/ENCDO904SOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39549/'], '@type': ['Target', 'Item'], 'name': 'CG17359-dmelanogaster', 'label': 'CG17359', '@id': '/targets/CG17359-dmelanogaster/', 'title': 'CG17359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a8f9a56c-981a-4eda-911c-1ca7d2020983', 'status': 'released'} dm3 3L 13981858 14001183 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF151QQQ/ 17845754 Kevin White, UChicago 713ecaf3b271f4f90434454bbb9697aa https://www.encodeproject.org/files/ENCFF984GCX/@@download/ENCFF984GCX.bigWig released s3://encode-public/2018/09/19/0fb25436-c54e-43b9-83b7-12d638cd3342/ENCFF984GCX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF046YBI bigWig bigWig read-depth normalized signal dm6 ENCSR840JKR Control ChIP-seq /fly-donors/ENCDO904SOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39549/'], '@type': ['Target', 'Item'], 'name': 'CG17359-dmelanogaster', 'label': 'CG17359', '@id': '/targets/CG17359-dmelanogaster/', 'title': 'CG17359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a8f9a56c-981a-4eda-911c-1ca7d2020983', 'status': 'released'} dm3 3L 13981858 14001183 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF151QQQ/ 17824580 Kevin White, UChicago d3adef43bf2e159938cf26ae948bd817 https://www.encodeproject.org/files/ENCFF046YBI/@@download/ENCFF046YBI.bigWig released s3://encode-public/2018/09/19/434b6578-5117-47e6-84d5-be00c6a1df2d/ENCFF046YBI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF160ZBS fastq fastq reads ENCSR976PNA Control ChIP-seq /fly-donors/ENCDO642WQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40513/'], '@type': ['Target', 'Item'], 'name': 'CG12768-dmelanogaster', 'label': 'CG12768', '@id': '/targets/CG12768-dmelanogaster/', 'title': 'CG12768 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72359ff-5427-4862-bd48-c7904a383939', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 672481074 Kevin White, UChicago 3bad021a6762433b81459354f9e839af https://www.encodeproject.org/files/ENCFF160ZBS/@@download/ENCFF160ZBS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/72e939e6-2f7f-467b-a113-fdabd3386fad/ENCFF160ZBS.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF080XVM bam bam alignments dm3 ENCSR976PNA Control ChIP-seq /fly-donors/ENCDO642WQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40513/'], '@type': ['Target', 'Item'], 'name': 'CG12768-dmelanogaster', 'label': 'CG12768', '@id': '/targets/CG12768-dmelanogaster/', 'title': 'CG12768 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72359ff-5427-4862-bd48-c7904a383939', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF160ZBS/ 920808914 Kevin White, UChicago 1bfb3bae63aa21d64b240f98b70edc9d https://www.encodeproject.org/files/ENCFF080XVM/@@download/ENCFF080XVM.bam released s3://encode-public/2017/09/12/da39db22-96b4-44a5-a169-cfc57c2b6257/ENCFF080XVM.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF714GGT bam bam alignments dm6 ENCSR976PNA Control ChIP-seq /fly-donors/ENCDO642WQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40513/'], '@type': ['Target', 'Item'], 'name': 'CG12768-dmelanogaster', 'label': 'CG12768', '@id': '/targets/CG12768-dmelanogaster/', 'title': 'CG12768 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72359ff-5427-4862-bd48-c7904a383939', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF160ZBS/ 902264587 Kevin White, UChicago 911b73dc339d2aecea3d08751cbb2bd8 https://www.encodeproject.org/files/ENCFF714GGT/@@download/ENCFF714GGT.bam released s3://encode-public/2017/09/13/a9972f9d-7bfb-42e9-8cca-f39c7e727359/ENCFF714GGT.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF336TGX bigWig bigWig signal of unique reads dm3 ENCSR976PNA Control ChIP-seq /fly-donors/ENCDO642WQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40513/'], '@type': ['Target', 'Item'], 'name': 'CG12768-dmelanogaster', 'label': 'CG12768', '@id': '/targets/CG12768-dmelanogaster/', 'title': 'CG12768 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72359ff-5427-4862-bd48-c7904a383939', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF080XVM/ 15505621 Kevin White, UChicago ea5a402b726f3c01c2b020d40dc98d06 https://www.encodeproject.org/files/ENCFF336TGX/@@download/ENCFF336TGX.bigWig released s3://encode-public/2017/09/13/0f10c645-903f-4165-8e84-30995a4258e8/ENCFF336TGX.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF425OOW bigWig bigWig read-depth normalized signal dm3 ENCSR976PNA Control ChIP-seq /fly-donors/ENCDO642WQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40513/'], '@type': ['Target', 'Item'], 'name': 'CG12768-dmelanogaster', 'label': 'CG12768', '@id': '/targets/CG12768-dmelanogaster/', 'title': 'CG12768 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72359ff-5427-4862-bd48-c7904a383939', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF080XVM/ 15509613 Kevin White, UChicago 81ebe5ad5ba2458b0ba0c98004f89fa5 https://www.encodeproject.org/files/ENCFF425OOW/@@download/ENCFF425OOW.bigWig released s3://encode-public/2017/09/13/a1bf00a8-8339-476a-b71e-2d3c4be20d81/ENCFF425OOW.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF438QUB bigWig bigWig read-depth normalized signal dm6 ENCSR976PNA Control ChIP-seq /fly-donors/ENCDO642WQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40513/'], '@type': ['Target', 'Item'], 'name': 'CG12768-dmelanogaster', 'label': 'CG12768', '@id': '/targets/CG12768-dmelanogaster/', 'title': 'CG12768 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72359ff-5427-4862-bd48-c7904a383939', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714GGT/ 17683888 Kevin White, UChicago 03006a9551da7732da58d1b7ef975d68 https://www.encodeproject.org/files/ENCFF438QUB/@@download/ENCFF438QUB.bigWig released s3://encode-public/2017/09/14/8b33accb-b4bf-40ee-b88d-3d189470ab1e/ENCFF438QUB.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF880ZVU bigWig bigWig signal of unique reads dm6 ENCSR976PNA Control ChIP-seq /fly-donors/ENCDO642WQM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40513/'], '@type': ['Target', 'Item'], 'name': 'CG12768-dmelanogaster', 'label': 'CG12768', '@id': '/targets/CG12768-dmelanogaster/', 'title': 'CG12768 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'a72359ff-5427-4862-bd48-c7904a383939', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714GGT/ 17678741 Kevin White, UChicago b6126dcd1aef9b5bfbee4b27f01ade53 https://www.encodeproject.org/files/ENCFF880ZVU/@@download/ENCFF880ZVU.bigWig released s3://encode-public/2017/09/14/577c1c2e-8f5a-4b45-8472-e976bbfe01b3/ENCFF880ZVU.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF544XAF fastq fastq reads ENCSR543SCG Control ChIP-seq /worm-donors/ENCDO832XGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181573/'], '@type': ['Target', 'Item'], 'name': 'unc-3-celegans', 'label': 'unc-3', '@id': '/targets/unc-3-celegans/', 'title': 'unc-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5c50c3c-5f9e-4f16-b7ce-584002ba1186', 'status': 'released'} ce10 X 14746734 14788585 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 697284706 Kevin White, UChicago 26880ebd74bbacf9c340ccf543c2a146 https://www.encodeproject.org/files/ENCFF544XAF/@@download/ENCFF544XAF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/09/833ad95c-c22b-45c3-b3ae-462ad8bafa6c/ENCFF544XAF.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF651XRQ bam bam alignments ce10 ENCSR543SCG Control ChIP-seq /worm-donors/ENCDO832XGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181573/'], '@type': ['Target', 'Item'], 'name': 'unc-3-celegans', 'label': 'unc-3', '@id': '/targets/unc-3-celegans/', 'title': 'unc-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5c50c3c-5f9e-4f16-b7ce-584002ba1186', 'status': 'released'} ce10 X 14746734 14788585 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF544XAF/ 828694041 Kevin White, UChicago 7b85760f92b850db6a0d69f041aaf40f https://www.encodeproject.org/files/ENCFF651XRQ/@@download/ENCFF651XRQ.bam released s3://encode-public/2016/05/10/faff0641-8c29-446d-ad8b-013e2a4506c2/ENCFF651XRQ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF963KBS bam bam alignments ce11 ENCSR543SCG Control ChIP-seq /worm-donors/ENCDO832XGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181573/'], '@type': ['Target', 'Item'], 'name': 'unc-3-celegans', 'label': 'unc-3', '@id': '/targets/unc-3-celegans/', 'title': 'unc-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5c50c3c-5f9e-4f16-b7ce-584002ba1186', 'status': 'released'} ce10 X 14746734 14788585 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF544XAF/ 829392868 Kevin White, UChicago 1c0b169470e34f60e617208f8ab13f02 https://www.encodeproject.org/files/ENCFF963KBS/@@download/ENCFF963KBS.bam released s3://encode-public/2016/05/10/c2fea660-544d-4e0a-8d1f-ce00f1118ea4/ENCFF963KBS.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF948LOR bigWig bigWig signal of unique reads ce10 ENCSR543SCG Control ChIP-seq /worm-donors/ENCDO832XGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181573/'], '@type': ['Target', 'Item'], 'name': 'unc-3-celegans', 'label': 'unc-3', '@id': '/targets/unc-3-celegans/', 'title': 'unc-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5c50c3c-5f9e-4f16-b7ce-584002ba1186', 'status': 'released'} ce10 X 14746734 14788585 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF651XRQ/ 9950362 Kevin White, UChicago 9454998863e9b9aa5deef5967d1da034 https://www.encodeproject.org/files/ENCFF948LOR/@@download/ENCFF948LOR.bigWig released s3://encode-public/2016/05/11/5c8504ba-7f7b-4900-a5a1-a4058a6ee22b/ENCFF948LOR.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF715JTP bigWig bigWig read-depth normalized signal ce10 ENCSR543SCG Control ChIP-seq /worm-donors/ENCDO832XGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181573/'], '@type': ['Target', 'Item'], 'name': 'unc-3-celegans', 'label': 'unc-3', '@id': '/targets/unc-3-celegans/', 'title': 'unc-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5c50c3c-5f9e-4f16-b7ce-584002ba1186', 'status': 'released'} ce10 X 14746734 14788585 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF651XRQ/ 9949161 Kevin White, UChicago 4455dc818c3d59c32732f3eab779e4a2 https://www.encodeproject.org/files/ENCFF715JTP/@@download/ENCFF715JTP.bigWig released s3://encode-public/2016/05/11/1ea401dd-856f-46b6-bf49-d3de0cb75d84/ENCFF715JTP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF613GWM bigWig bigWig read-depth normalized signal ce11 ENCSR543SCG Control ChIP-seq /worm-donors/ENCDO832XGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181573/'], '@type': ['Target', 'Item'], 'name': 'unc-3-celegans', 'label': 'unc-3', '@id': '/targets/unc-3-celegans/', 'title': 'unc-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5c50c3c-5f9e-4f16-b7ce-584002ba1186', 'status': 'released'} ce10 X 14746734 14788585 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF963KBS/ 9947041 Kevin White, UChicago 736c39fc1d92fa05eef61cbc9173e793 https://www.encodeproject.org/files/ENCFF613GWM/@@download/ENCFF613GWM.bigWig released s3://encode-public/2016/05/11/d82224f5-7b05-43df-80d1-54132ccdd479/ENCFF613GWM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF132VUL bigWig bigWig signal of unique reads ce11 ENCSR543SCG Control ChIP-seq /worm-donors/ENCDO832XGQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181573/'], '@type': ['Target', 'Item'], 'name': 'unc-3-celegans', 'label': 'unc-3', '@id': '/targets/unc-3-celegans/', 'title': 'unc-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd5c50c3c-5f9e-4f16-b7ce-584002ba1186', 'status': 'released'} ce10 X 14746734 14788585 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF963KBS/ 9946868 Kevin White, UChicago cc0ee28d299576c629e8b6c167bcd14f https://www.encodeproject.org/files/ENCFF132VUL/@@download/ENCFF132VUL.bigWig released s3://encode-public/2016/05/11/00029b95-f573-4f11-aecf-30655bcdd579/ENCFF132VUL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF583YQK fastq fastq reads ENCSR810HCI Control ChIP-seq /fly-donors/ENCDO177HIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39582/'], '@type': ['Target', 'Item'], 'name': 'CG3919-dmelanogaster', 'label': 'CG3919', '@id': '/targets/CG3919-dmelanogaster/', 'title': 'CG3919 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1799a86b-4ad0-4c7c-a7b5-43d118ff80ec', 'status': 'released'} dm3 3L 14394563 14416178 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 876206562 Kevin White, UChicago 409a868b751528fb36f8614c1d633dd6 https://www.encodeproject.org/files/ENCFF583YQK/@@download/ENCFF583YQK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/9460b6ad-3671-4729-b445-64b8d186b4df/ENCFF583YQK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF732NUT bam bam alignments dm3 ENCSR810HCI Control ChIP-seq /fly-donors/ENCDO177HIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39582/'], '@type': ['Target', 'Item'], 'name': 'CG3919-dmelanogaster', 'label': 'CG3919', '@id': '/targets/CG3919-dmelanogaster/', 'title': 'CG3919 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1799a86b-4ad0-4c7c-a7b5-43d118ff80ec', 'status': 'released'} dm3 3L 14394563 14416178 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF583YQK/ 1045081739 Kevin White, UChicago d9a8bd01b577a31b031e301079f15680 https://www.encodeproject.org/files/ENCFF732NUT/@@download/ENCFF732NUT.bam released s3://encode-public/2016/04/10/b402821f-97e5-4fcb-bf2e-56bd43ab1bea/ENCFF732NUT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF133MGD bigWig bigWig signal of unique reads dm3 ENCSR810HCI Control ChIP-seq /fly-donors/ENCDO177HIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39582/'], '@type': ['Target', 'Item'], 'name': 'CG3919-dmelanogaster', 'label': 'CG3919', '@id': '/targets/CG3919-dmelanogaster/', 'title': 'CG3919 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1799a86b-4ad0-4c7c-a7b5-43d118ff80ec', 'status': 'released'} dm3 3L 14394563 14416178 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF732NUT/ 15249840 Kevin White, UChicago 8fb7de9160fb3d66a464e954c2d29301 https://www.encodeproject.org/files/ENCFF133MGD/@@download/ENCFF133MGD.bigWig released s3://encode-public/2016/04/11/d67b69c3-38c4-46a5-b1d1-e23eaeeb801d/ENCFF133MGD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF724CVJ bigWig bigWig read-depth normalized signal dm3 ENCSR810HCI Control ChIP-seq /fly-donors/ENCDO177HIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39582/'], '@type': ['Target', 'Item'], 'name': 'CG3919-dmelanogaster', 'label': 'CG3919', '@id': '/targets/CG3919-dmelanogaster/', 'title': 'CG3919 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1799a86b-4ad0-4c7c-a7b5-43d118ff80ec', 'status': 'released'} dm3 3L 14394563 14416178 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF732NUT/ 15254260 Kevin White, UChicago ef80ea495bdb4705d1c96dc81e27b71f https://www.encodeproject.org/files/ENCFF724CVJ/@@download/ENCFF724CVJ.bigWig released s3://encode-public/2016/04/11/1c1b4fe7-da8a-49aa-b447-68ebc7cc811f/ENCFF724CVJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF140ZKX bam bam alignments dm6 ENCSR810HCI Control ChIP-seq /fly-donors/ENCDO177HIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39582/'], '@type': ['Target', 'Item'], 'name': 'CG3919-dmelanogaster', 'label': 'CG3919', '@id': '/targets/CG3919-dmelanogaster/', 'title': 'CG3919 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1799a86b-4ad0-4c7c-a7b5-43d118ff80ec', 'status': 'released'} dm3 3L 14394563 14416178 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF583YQK/ 1041760133 Kevin White, UChicago 9725d71799c51b6427e3f3fe500cacce https://www.encodeproject.org/files/ENCFF140ZKX/@@download/ENCFF140ZKX.bam released s3://encode-public/2016/04/21/fb2be07a-a804-4bce-bbd0-47f30aa15700/ENCFF140ZKX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF768VYZ bigWig bigWig read-depth normalized signal dm6 ENCSR810HCI Control ChIP-seq /fly-donors/ENCDO177HIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39582/'], '@type': ['Target', 'Item'], 'name': 'CG3919-dmelanogaster', 'label': 'CG3919', '@id': '/targets/CG3919-dmelanogaster/', 'title': 'CG3919 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1799a86b-4ad0-4c7c-a7b5-43d118ff80ec', 'status': 'released'} dm3 3L 14394563 14416178 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF140ZKX/ 17327783 Kevin White, UChicago 11af2c5b8e59e9f6f541f9fe6c15397c https://www.encodeproject.org/files/ENCFF768VYZ/@@download/ENCFF768VYZ.bigWig released s3://encode-public/2016/06/20/9fb57eb6-672b-4a49-b56b-658cce831533/ENCFF768VYZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF585HOW bigWig bigWig signal of unique reads dm6 ENCSR810HCI Control ChIP-seq /fly-donors/ENCDO177HIY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39582/'], '@type': ['Target', 'Item'], 'name': 'CG3919-dmelanogaster', 'label': 'CG3919', '@id': '/targets/CG3919-dmelanogaster/', 'title': 'CG3919 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1799a86b-4ad0-4c7c-a7b5-43d118ff80ec', 'status': 'released'} dm3 3L 14394563 14416178 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF140ZKX/ 17328918 Kevin White, UChicago 9005cd59b4a2d10a0df32e76cbdfa7e1 https://www.encodeproject.org/files/ENCFF585HOW/@@download/ENCFF585HOW.bigWig released s3://encode-public/2016/06/20/7d74816d-70b9-4893-8ba4-95d048820ac1/ENCFF585HOW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF017QNZ fastq fastq reads ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF689DPJ/ 2707857104 Michael Snyder, Stanford 1f80c252f5c70f1e092948a977fe78b7 SRA:SRR6212678 https://www.encodeproject.org/files/ENCFF017QNZ/@@download/ENCFF017QNZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/b61655dd-48ae-45c7-8fe5-5e7d090f06bb/ENCFF017QNZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF689DPJ fastq fastq reads ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF017QNZ/ 3265295307 Michael Snyder, Stanford dd8a91d40d4ebfc6e15e6f2006ed09b3 SRA:SRR6212678 https://www.encodeproject.org/files/ENCFF689DPJ/@@download/ENCFF689DPJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/8416d22e-6ed0-428d-9de9-190895b6228d/ENCFF689DPJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF856ESK bam bam alignments hg19 ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF689DPJ/, /files/ENCFF017QNZ/ 3655274716 ENCODE Processing Pipeline 52ef9fc9d5fa5b4535c277adde8c7897 https://www.encodeproject.org/files/ENCFF856ESK/@@download/ENCFF856ESK.bam released s3://encode-public/2016/12/10/e0d04ea9-1772-482b-98e9-969be2c4e1a7/ENCFF856ESK.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF074YOT bam bam unfiltered alignments hg19 ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF689DPJ/, /files/ENCFF017QNZ/ 5421947346 ENCODE Processing Pipeline dd99e1ae3c0f7dd74abf58e0457814c3 https://www.encodeproject.org/files/ENCFF074YOT/@@download/ENCFF074YOT.bam released s3://encode-public/2016/12/10/6ac1d465-edcc-4875-bc34-d07c9c39b90c/ENCFF074YOT.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF507FYB bam bam unfiltered alignments GRCh38 ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF689DPJ/, /files/ENCFF017QNZ/ 5428369198 ENCODE Processing Pipeline ba1c336b51b42a406cb256c1cd793217 https://www.encodeproject.org/files/ENCFF507FYB/@@download/ENCFF507FYB.bam released s3://encode-public/2016/12/10/4c797b81-1c20-4dbe-8bde-e07ce4e56e8e/ENCFF507FYB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF575CYL bam bam alignments GRCh38 ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF689DPJ/, /files/ENCFF017QNZ/ 3661721574 ENCODE Processing Pipeline ff59fbe58360418ffb25e6a5d42e8c51 https://www.encodeproject.org/files/ENCFF575CYL/@@download/ENCFF575CYL.bam released s3://encode-public/2016/12/10/9cbecf00-ab2f-4368-8be0-b892f68b0dd4/ENCFF575CYL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF285DHA bam bam unfiltered alignments GRCh38 ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF017QNZ/, /files/ENCFF689DPJ/ 5430790978 ENCODE Processing Pipeline 67ac7581dc948d68a5e65d2fbce7647a https://www.encodeproject.org/files/ENCFF285DHA/@@download/ENCFF285DHA.bam released s3://encode-public/2020/06/03/a52d827b-1ea5-4006-92e1-53ee48d4814e/ENCFF285DHA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF737BMU bam bam alignments GRCh38 ENCSR117KTL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF017QNZ/, /files/ENCFF689DPJ/ 3617321532 ENCODE Processing Pipeline a5b359111015572693afa4abcb75dce7 https://www.encodeproject.org/files/ENCFF737BMU/@@download/ENCFF737BMU.bam released s3://encode-public/2020/06/03/03a7dd8f-aa1a-4711-8f40-3d5e27ae089f/ENCFF737BMU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF306TBR fastq fastq reads ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1642509301 Bradley Bernstein, Broad e25a271bcbc7a57804c2409f0f931806 SRA:SRR5833020 https://www.encodeproject.org/files/ENCFF306TBR/@@download/ENCFF306TBR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/d688a091-438b-464f-ba98-21bd13a4fced/ENCFF306TBR.fastq.gz ENCFF056UQL fastq fastq reads ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1615395896 Bradley Bernstein, Broad 67d516c671980a1f5d13a7a2d3db8d69 SRA:SRR5833021 https://www.encodeproject.org/files/ENCFF056UQL/@@download/ENCFF056UQL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/a7848943-ba66-4560-b3d7-20ac8d872229/ENCFF056UQL.fastq.gz ENCFF775HII bam bam unfiltered alignments GRCh38 ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF056UQL/, /files/ENCFF306TBR/, /files/ENCFF643CGH/ 3166264564 ENCODE Processing Pipeline 76df11b58a93001d9a4114e5d77bd671 https://www.encodeproject.org/files/ENCFF775HII/@@download/ENCFF775HII.bam released s3://encode-public/2016/10/27/ecc77655-b9c3-4d38-bae2-472bdcaf211e/ENCFF775HII.bam ENCODE3 GRCh38 archived ENCFF851NWB bam bam unfiltered alignments hg19 ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF056UQL/, /files/ENCFF807MUK/, /files/ENCFF306TBR/ 3155729224 ENCODE Processing Pipeline d87946151f91d9122cf23771da3d285e https://www.encodeproject.org/files/ENCFF851NWB/@@download/ENCFF851NWB.bam released s3://encode-public/2016/10/27/5ec8f9be-ec96-4f0f-ab43-bf3e7410a332/ENCFF851NWB.bam ENCODE3 hg19 archived ENCFF228XSQ bam bam alignments GRCh38 ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF056UQL/, /files/ENCFF306TBR/, /files/ENCFF643CGH/ 2690241944 ENCODE Processing Pipeline 6c2ec99a3290c6360d8c3b0fed61905c https://www.encodeproject.org/files/ENCFF228XSQ/@@download/ENCFF228XSQ.bam released s3://encode-public/2016/10/27/e53d275b-75ed-4d49-8ee3-7323a2f298d8/ENCFF228XSQ.bam ENCODE3 GRCh38 archived ENCFF417KJF bam bam alignments hg19 ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF056UQL/, /files/ENCFF807MUK/, /files/ENCFF306TBR/ 2686755220 ENCODE Processing Pipeline 23a059dd851a84fcb560446c247f6df1 https://www.encodeproject.org/files/ENCFF417KJF/@@download/ENCFF417KJF.bam released s3://encode-public/2016/10/27/220a6afa-da9e-44e7-b5ce-43064e752029/ENCFF417KJF.bam ENCODE3 hg19 archived ENCFF956LVJ bam bam unfiltered alignments GRCh38 ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF306TBR/, /files/ENCFF056UQL/ 3205384116 ENCODE Processing Pipeline e9e0c82940d8af2b8754a26acd2da234 https://www.encodeproject.org/files/ENCFF956LVJ/@@download/ENCFF956LVJ.bam released s3://encode-public/2020/08/20/f1c15435-1ec5-436d-ba91-336a9e43a33a/ENCFF956LVJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF640LEC bam bam alignments GRCh38 ENCSR833HBT Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF306TBR/, /files/ENCFF056UQL/ 2719396815 ENCODE Processing Pipeline 284e44fe0ffd9d03812c6b4c74a042d0 https://www.encodeproject.org/files/ENCFF640LEC/@@download/ENCFF640LEC.bam released s3://encode-public/2020/08/20/5b3d9512-3b22-4d49-94b0-04eaeb5dfc09/ENCFF640LEC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF194EWF fastq fastq reads ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF203FOV/ 2238341215 Michael Snyder, Stanford a1ff1b3b84fb9404f782c177b8361006 SRA:SRR6214347 https://www.encodeproject.org/files/ENCFF194EWF/@@download/ENCFF194EWF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/93ffdf9f-99bd-44da-84fb-3116640b8325/ENCFF194EWF.fastq.gz ENCFF203FOV fastq fastq reads ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF194EWF/ 2601926818 Michael Snyder, Stanford b148774992bf621dc98ff4c0ef7eb5bd SRA:SRR6214347 https://www.encodeproject.org/files/ENCFF203FOV/@@download/ENCFF203FOV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/07/be15328d-da74-4098-ae2a-42f6135a9ebd/ENCFF203FOV.fastq.gz ENCFF403PYK bam bam unfiltered alignments hg19 ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF203FOV/, /files/ENCFF807MUK/, /files/ENCFF194EWF/ 4819031839 ENCODE Processing Pipeline 44b19a86bdf93e36b453a2f9aba27adc https://www.encodeproject.org/files/ENCFF403PYK/@@download/ENCFF403PYK.bam released s3://encode-public/2016/12/10/f6f7ecac-b3ea-4019-883a-ea339bc61031/ENCFF403PYK.bam ENCODE3 hg19 archived ENCFF027GOA bam bam alignments hg19 ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF203FOV/, /files/ENCFF807MUK/, /files/ENCFF194EWF/ 4078604267 ENCODE Processing Pipeline 4c66c6748cd4d77d1408e2af3010b7aa https://www.encodeproject.org/files/ENCFF027GOA/@@download/ENCFF027GOA.bam released s3://encode-public/2016/12/10/9125cbf5-3180-400d-b19b-ed15764489a6/ENCFF027GOA.bam ENCODE3 hg19 archived ENCFF630YHO bam bam unfiltered alignments GRCh38 ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF203FOV/, /files/ENCFF643CGH/, /files/ENCFF194EWF/ 4828465187 ENCODE Processing Pipeline df5f09af689fca1b774ae54c30b9fab3 https://www.encodeproject.org/files/ENCFF630YHO/@@download/ENCFF630YHO.bam released s3://encode-public/2016/12/10/194dbb08-0eb8-42d0-a768-b5f03a928138/ENCFF630YHO.bam ENCODE3 GRCh38 archived ENCFF418QRN bam bam alignments GRCh38 ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF203FOV/, /files/ENCFF643CGH/, /files/ENCFF194EWF/ 4082169592 ENCODE Processing Pipeline 066ff32a8be54361a2149371043aaa94 https://www.encodeproject.org/files/ENCFF418QRN/@@download/ENCFF418QRN.bam released s3://encode-public/2016/12/10/b9e163f4-472d-4603-be3a-259092dcc992/ENCFF418QRN.bam ENCODE3 GRCh38 archived ENCFF140GGU bam bam alignments GRCh38 ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF194EWF/, /files/ENCFF203FOV/ 3983962985 ENCODE Processing Pipeline 3d63f1fbc888826e46fa1a0250f7dbcb https://www.encodeproject.org/files/ENCFF140GGU/@@download/ENCFF140GGU.bam released s3://encode-public/2020/06/02/0f47f7ca-1834-4b30-93fc-6f3c3b054d29/ENCFF140GGU.bam ENCODE4 GRCh38 released ENCFF202HTY bam bam unfiltered alignments GRCh38 ENCSR867NUH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002369 adrenal gland tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF194EWF/, /files/ENCFF203FOV/ 4811709070 ENCODE Processing Pipeline bc91cf29258e14cedd746b50c765c1a3 https://www.encodeproject.org/files/ENCFF202HTY/@@download/ENCFF202HTY.bam released s3://encode-public/2020/06/02/dd43b88a-4d21-4f2c-b889-ac1208841adc/ENCFF202HTY.bam ENCODE4 GRCh38 released ENCFF132LRP fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 473747745 Bradley Bernstein, Broad 8bb1a8869e3417453c23776f5be7d6a3 SRA:SRR14105283 https://www.encodeproject.org/files/ENCFF132LRP/@@download/ENCFF132LRP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e8763678-fa9c-4aec-b6db-c30c210206c0/ENCFF132LRP.fastq.gz ENCFF664GXO fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 467913767 Bradley Bernstein, Broad ba0a2d77bb9e0f809e90dfb0f13453d6 SRA:SRR14105284 https://www.encodeproject.org/files/ENCFF664GXO/@@download/ENCFF664GXO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/fde3039e-77b0-4b90-919a-1ad151e01c6f/ENCFF664GXO.fastq.gz ENCFF159VWY fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 475312366 Bradley Bernstein, Broad 0b0cd2506d35e095aa4d280490847758 SRA:SRR14105285 https://www.encodeproject.org/files/ENCFF159VWY/@@download/ENCFF159VWY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/48e26753-9e15-4407-a116-57c7ce9b9520/ENCFF159VWY.fastq.gz ENCFF887FBY fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 456099062 Bradley Bernstein, Broad c58fae72fddcd585b32bb0394f030b3c SRA:SRR14105286 https://www.encodeproject.org/files/ENCFF887FBY/@@download/ENCFF887FBY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7ba5e84f-8c39-4d37-95ab-3cee1a4b4ea2/ENCFF887FBY.fastq.gz ENCFF308JUX fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 398627079 Bradley Bernstein, Broad 36f14450ce268cda205092e1eb84538c SRA:SRR14105279 https://www.encodeproject.org/files/ENCFF308JUX/@@download/ENCFF308JUX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5aad22e8-5945-4fcb-b056-6fd6b8f83849/ENCFF308JUX.fastq.gz ENCFF735UTN fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 404120646 Bradley Bernstein, Broad e8d0b5ed256634999cb3e4496475b1c5 SRA:SRR14105280 https://www.encodeproject.org/files/ENCFF735UTN/@@download/ENCFF735UTN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6d99b7ed-3147-4506-9b39-1ae2499234f6/ENCFF735UTN.fastq.gz ENCFF696VOG fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 404221801 Bradley Bernstein, Broad 321126de8155e3e73ded5e149ad9495b SRA:SRR14105281 https://www.encodeproject.org/files/ENCFF696VOG/@@download/ENCFF696VOG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8f422994-52b5-4f3c-9959-29e7272bc35a/ENCFF696VOG.fastq.gz ENCFF980EQP fastq fastq reads ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 414286795 Bradley Bernstein, Broad 4fb42688dd74007ca677f872ceeb2e8d SRA:SRR14105282 https://www.encodeproject.org/files/ENCFF980EQP/@@download/ENCFF980EQP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7cc19fef-b83e-4024-89a5-4772713f1eb3/ENCFF980EQP.fastq.gz ENCFF993UMJ bam bam unfiltered alignments GRCh38 ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF696VOG/, /files/ENCFF132LRP/, /files/ENCFF110MCL/, /files/ENCFF980EQP/, /files/ENCFF735UTN/, /files/ENCFF308JUX/, /files/ENCFF664GXO/, /files/ENCFF887FBY/, /files/ENCFF159VWY/ 3447711047 ENCODE Processing Pipeline 8505f283575dc26b5908916d7772ce8e https://www.encodeproject.org/files/ENCFF993UMJ/@@download/ENCFF993UMJ.bam released s3://encode-public/2020/06/14/6139079f-e83c-433c-ac6d-297e2759cd7c/ENCFF993UMJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF538VQF bam bam alignments GRCh38 ENCSR333DCK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011019 mesothelial cell of epicardium in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF696VOG/, /files/ENCFF132LRP/, /files/ENCFF110MCL/, /files/ENCFF980EQP/, /files/ENCFF735UTN/, /files/ENCFF308JUX/, /files/ENCFF664GXO/, /files/ENCFF887FBY/, /files/ENCFF159VWY/ 2878391554 ENCODE Processing Pipeline 6604875238cd40ac67d07efb644599dd https://www.encodeproject.org/files/ENCFF538VQF/@@download/ENCFF538VQF.bam released s3://encode-public/2020/06/14/b930b7d4-508a-44a4-af72-3c7e4b83d4d9/ENCFF538VQF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF869YKQ fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 611130463 Bradley Bernstein, Broad 2015e299d54bbf7d5a1200dc3ddf0aaa SRA:SRR13804770 https://www.encodeproject.org/files/ENCFF869YKQ/@@download/ENCFF869YKQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3e4f89ee-9439-4cec-9899-9607d61283b2/ENCFF869YKQ.fastq.gz ENCFF683WNW fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 565244359 Bradley Bernstein, Broad 900f3d98bd969bbd0ba42e7a98ee5cd8 SRA:SRR13804774 https://www.encodeproject.org/files/ENCFF683WNW/@@download/ENCFF683WNW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b7ad39e9-325b-4f42-9b52-fb904e4e4be4/ENCFF683WNW.fastq.gz ENCFF713DEC fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 556426843 Bradley Bernstein, Broad 56879b23d95eee8be014a218deeb5573 SRA:SRR13804775 https://www.encodeproject.org/files/ENCFF713DEC/@@download/ENCFF713DEC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/801af392-99ef-410b-953c-87a6225bedbd/ENCFF713DEC.fastq.gz ENCFF278EQU fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 619763313 Bradley Bernstein, Broad cd6b1e20cd14e7ea012e7523752b506e SRA:SRR13804771 https://www.encodeproject.org/files/ENCFF278EQU/@@download/ENCFF278EQU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a8906f29-255a-4ea9-8ab7-15d201470bfe/ENCFF278EQU.fastq.gz ENCFF121BEK fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 603908996 Bradley Bernstein, Broad fe6e7ae9c0493c2f9fbf6a2560ae2baf SRA:SRR13804772 https://www.encodeproject.org/files/ENCFF121BEK/@@download/ENCFF121BEK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/c65f28d6-7c01-449f-8fbe-bddef87d318b/ENCFF121BEK.fastq.gz ENCFF849UQN fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 610322451 Bradley Bernstein, Broad 7767f8d27bb64b8ea303043af6a9590f SRA:SRR13804773 https://www.encodeproject.org/files/ENCFF849UQN/@@download/ENCFF849UQN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/495958c3-753a-4a05-b075-138b8b6eb2b3/ENCFF849UQN.fastq.gz ENCFF934YGA fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 556534185 Bradley Bernstein, Broad 54f2ee1b628d3eb904e455706a3e9e3a SRA:SRR13804776 https://www.encodeproject.org/files/ENCFF934YGA/@@download/ENCFF934YGA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7e733a1b-60a1-461e-82ee-02675ed300d8/ENCFF934YGA.fastq.gz ENCFF911BDW fastq fastq reads ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 549676960 Bradley Bernstein, Broad 0bce85504b37982e2400562d7c5ce307 SRA:SRR13804777 https://www.encodeproject.org/files/ENCFF911BDW/@@download/ENCFF911BDW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b490bb54-4be3-4d76-8807-7806af1a3e24/ENCFF911BDW.fastq.gz ENCFF605JPC bam bam alignments GRCh38 ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF849UQN/, /files/ENCFF911BDW/, /files/ENCFF869YKQ/, /files/ENCFF121BEK/, /files/ENCFF934YGA/, /files/ENCFF683WNW/, /files/ENCFF110MCL/, /files/ENCFF713DEC/, /files/ENCFF278EQU/ 3728449612 ENCODE Processing Pipeline c30001e798968309f6f2dcb0afa59b2e https://www.encodeproject.org/files/ENCFF605JPC/@@download/ENCFF605JPC.bam released s3://encode-public/2020/06/14/119b7dc6-54c1-4070-b573-c7f82244834f/ENCFF605JPC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF238NFK bam bam unfiltered alignments GRCh38 ENCSR490NCK Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0001264 pancreas tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF849UQN/, /files/ENCFF911BDW/, /files/ENCFF869YKQ/, /files/ENCFF121BEK/, /files/ENCFF934YGA/, /files/ENCFF683WNW/, /files/ENCFF110MCL/, /files/ENCFF713DEC/, /files/ENCFF278EQU/ 4427567217 ENCODE Processing Pipeline 8aa6bc4221920e865b4776a50b5150ab https://www.encodeproject.org/files/ENCFF238NFK/@@download/ENCFF238NFK.bam released s3://encode-public/2020/06/14/49a580fe-36d5-4e46-9a1a-9bc24d96ce95/ENCFF238NFK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF253GID fastq fastq reads ENCSR474FXV Control ChIP-seq /fly-donors/ENCDO344DUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 655253298 Kevin White, UChicago 36f404b2c69c0d5e9a8756f3f8e4cbb5 https://www.encodeproject.org/files/ENCFF253GID/@@download/ENCFF253GID.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/d0ad976c-b9ac-4b0d-84fb-9763974da058/ENCFF253GID.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF394PGP bam bam alignments dm3 ENCSR474FXV Control ChIP-seq /fly-donors/ENCDO344DUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF253GID/ 883989993 Kevin White, UChicago 0ce91c75db7525bebd32eecf8195fb67 https://www.encodeproject.org/files/ENCFF394PGP/@@download/ENCFF394PGP.bam released s3://encode-public/2017/09/12/1918a35e-2953-42fb-a490-94f23ae47f26/ENCFF394PGP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF086TDU bam bam alignments dm6 ENCSR474FXV Control ChIP-seq /fly-donors/ENCDO344DUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF253GID/ 876873997 Kevin White, UChicago 64f02f5de3bc2888cebfd732606f3ccd https://www.encodeproject.org/files/ENCFF086TDU/@@download/ENCFF086TDU.bam released s3://encode-public/2017/09/13/6c1c51b9-20eb-4c27-973f-f6a0381f6b64/ENCFF086TDU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF451IYG bigWig bigWig signal of unique reads dm3 ENCSR474FXV Control ChIP-seq /fly-donors/ENCDO344DUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF394PGP/ 15301469 Kevin White, UChicago 850d3ce714002f234405749187f51701 https://www.encodeproject.org/files/ENCFF451IYG/@@download/ENCFF451IYG.bigWig released s3://encode-public/2017/09/18/5e95ff96-d71a-4447-a9aa-445d99e68ed2/ENCFF451IYG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF839JGD bigWig bigWig read-depth normalized signal dm3 ENCSR474FXV Control ChIP-seq /fly-donors/ENCDO344DUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF394PGP/ 15304331 Kevin White, UChicago aee35687f2c1cc7699d9a8cd858ab537 https://www.encodeproject.org/files/ENCFF839JGD/@@download/ENCFF839JGD.bigWig released s3://encode-public/2017/09/18/e5150d92-bf9b-412d-acf9-d99ff53e0e40/ENCFF839JGD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF022EOT bigWig bigWig signal of unique reads dm6 ENCSR474FXV Control ChIP-seq /fly-donors/ENCDO344DUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF086TDU/ 17481012 Kevin White, UChicago 02a7273024c9a063d3c2a34dc381b980 https://www.encodeproject.org/files/ENCFF022EOT/@@download/ENCFF022EOT.bigWig released s3://encode-public/2017/09/18/f05b12b9-11a7-41aa-a7de-2b6d947730b9/ENCFF022EOT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF913MBC bigWig bigWig read-depth normalized signal dm6 ENCSR474FXV Control ChIP-seq /fly-donors/ENCDO344DUH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF086TDU/ 17486849 Kevin White, UChicago 5539e448d93855a6a21a7aef111e5c6f https://www.encodeproject.org/files/ENCFF913MBC/@@download/ENCFF913MBC.bigWig released s3://encode-public/2017/09/18/7b50cb8a-6b85-47bc-9f6a-565667f34aef/ENCFF913MBC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF185AAC fastq fastq reads ENCSR054LVI Control ChIP-seq /fly-donors/ENCDO297EGD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 878888229 Kevin White, UChicago aba736ef0e03b1d601ad5cc0e8e4b641 https://www.encodeproject.org/files/ENCFF185AAC/@@download/ENCFF185AAC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/1ce6a892-0c30-4536-970f-6a235ce090dc/ENCFF185AAC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF268BGJ bam bam alignments dm3 ENCSR054LVI Control ChIP-seq /fly-donors/ENCDO297EGD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF185AAC/ 1189691174 Kevin White, UChicago 022786fe5e6c991eb5ef2b79ea786fae https://www.encodeproject.org/files/ENCFF268BGJ/@@download/ENCFF268BGJ.bam released s3://encode-public/2017/09/12/2c838997-ad75-47f5-9016-c81b91548a29/ENCFF268BGJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF505SVE bam bam alignments dm6 ENCSR054LVI Control ChIP-seq /fly-donors/ENCDO297EGD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF185AAC/ 1182360560 Kevin White, UChicago ef7260f2e6d18671d296a2b395c409f6 https://www.encodeproject.org/files/ENCFF505SVE/@@download/ENCFF505SVE.bam released s3://encode-public/2017/09/13/f082e2e6-b198-45e6-a461-03778e49857b/ENCFF505SVE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF170SEM bigWig bigWig signal of unique reads dm3 ENCSR054LVI Control ChIP-seq /fly-donors/ENCDO297EGD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF268BGJ/ 15402337 Kevin White, UChicago efd3b8faca6ee1468be13fb8460d8ede https://www.encodeproject.org/files/ENCFF170SEM/@@download/ENCFF170SEM.bigWig released s3://encode-public/2017/09/18/30d2926b-aae9-456a-a861-36c534c5d7f6/ENCFF170SEM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF652TGA bigWig bigWig read-depth normalized signal dm3 ENCSR054LVI Control ChIP-seq /fly-donors/ENCDO297EGD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF268BGJ/ 15411876 Kevin White, UChicago 8c8c56db0915777fe4fac50d8d5aeaa1 https://www.encodeproject.org/files/ENCFF652TGA/@@download/ENCFF652TGA.bigWig released s3://encode-public/2017/09/18/83f6eec5-0b90-44f2-b910-427218051bac/ENCFF652TGA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF491JOZ bigWig bigWig read-depth normalized signal dm6 ENCSR054LVI Control ChIP-seq /fly-donors/ENCDO297EGD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF505SVE/ 17623254 Kevin White, UChicago b88be7bcbd08a706edecb7475e8a3aee https://www.encodeproject.org/files/ENCFF491JOZ/@@download/ENCFF491JOZ.bigWig released s3://encode-public/2017/09/18/6fccb95e-803a-4084-ab51-67ed79b8adad/ENCFF491JOZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF564TLR bigWig bigWig signal of unique reads dm6 ENCSR054LVI Control ChIP-seq /fly-donors/ENCDO297EGD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41988/'], '@type': ['Target', 'Item'], 'name': 'ss-dmelanogaster', 'label': 'ss', '@id': '/targets/ss-dmelanogaster/', 'title': 'ss (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '08e99614-abc4-4d8d-971d-cc2e8c388bb3', 'status': 'released'} dm3 3R 12149676 12257342 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF505SVE/ 17601416 Kevin White, UChicago b84180fbcbb6f50fcf2c627134b87386 https://www.encodeproject.org/files/ENCFF564TLR/@@download/ENCFF564TLR.bigWig released s3://encode-public/2017/09/18/ec78299a-8784-4f50-9351-e91ce619e8b9/ENCFF564TLR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF582BTC bam bam unfiltered alignments hg19 ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF417ORB/, /files/ENCFF807MUK/, /files/ENCFF839JCV/ 8122317347 ENCODE Processing Pipeline 610033036d4462854328497c5d33a8cc https://www.encodeproject.org/files/ENCFF582BTC/@@download/ENCFF582BTC.bam released s3://encode-public/2018/02/21/acf69b6b-ac00-471e-9d70-32e902666b83/ENCFF582BTC.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF839JCV fastq fastq reads ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF417ORB/ 3851258646 Michael Snyder, Stanford fc74f51c85f68f70a707cc6ec81f1893 SRA:SRR5111893 https://www.encodeproject.org/files/ENCFF839JCV/@@download/ENCFF839JCV.fastq.gz Illumina HiSeq 2000 /files/ENCFF160VFX/, /files/ENCFF439KJM/ released s3://encode-public/2016/04/01/c38950a2-1b35-4261-a667-c33fdc6bde77/ENCFF839JCV.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF417ORB fastq fastq reads ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF839JCV/ 3704198039 Michael Snyder, Stanford e48b4a24012a1e3554fd503ead30ae35 SRA:SRR5111893 https://www.encodeproject.org/files/ENCFF417ORB/@@download/ENCFF417ORB.fastq.gz Illumina HiSeq 2000 /files/ENCFF160VFX/, /files/ENCFF439KJM/ released s3://encode-public/2016/04/01/b4cc82c1-2aed-4a55-a637-46b09c6c0527/ENCFF417ORB.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF419SJQ bam bam alignments hg19 ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF417ORB/, /files/ENCFF807MUK/, /files/ENCFF839JCV/ 6348811911 ENCODE Processing Pipeline b95928f6dd905bccbb3b49bc1b1a19d3 https://www.encodeproject.org/files/ENCFF419SJQ/@@download/ENCFF419SJQ.bam released s3://encode-public/2016/05/21/1afea821-e6af-4c03-81fe-6d53ba7bec3f/ENCFF419SJQ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF471FGD bam bam unfiltered alignments GRCh38 ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF417ORB/, /files/ENCFF643CGH/, /files/ENCFF839JCV/ 8133935432 ENCODE Processing Pipeline 3a054eb2c6f54c0a59b7a26d0d85320c https://www.encodeproject.org/files/ENCFF471FGD/@@download/ENCFF471FGD.bam released s3://encode-public/2016/10/29/2b4ef90c-33a3-422c-a190-94513d123c61/ENCFF471FGD.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF177OCL bam bam alignments GRCh38 ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF417ORB/, /files/ENCFF643CGH/, /files/ENCFF839JCV/ 6356149987 ENCODE Processing Pipeline 28eaaaa18b07dbee624c859d2d68486b https://www.encodeproject.org/files/ENCFF177OCL/@@download/ENCFF177OCL.bam released s3://encode-public/2016/10/29/b88860ca-5434-467b-b9c6-69b2ac4257fb/ENCFF177OCL.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF532EBT bam bam unfiltered alignments GRCh38 ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF417ORB/, /files/ENCFF839JCV/ 8153945731 ENCODE Processing Pipeline 98bc881fc06f936487a7a317a0e8829f https://www.encodeproject.org/files/ENCFF532EBT/@@download/ENCFF532EBT.bam released s3://encode-public/2020/06/02/b684cce4-48f2-43d5-937a-04bd0618b841/ENCFF532EBT.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF734DAT bam bam alignments GRCh38 ENCSR623SDL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-73'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5089/'], '@type': ['Target', 'Item'], 'name': 'PBX2-human', 'label': 'PBX2', '@id': '/targets/PBX2-human/', 'title': 'PBX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1b3477a8-2eb2-4b98-8eff-5c4f97914f2b', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF417ORB/, /files/ENCFF839JCV/ 6299541552 ENCODE Processing Pipeline 97066f2657ca7b016509edc864143f1c https://www.encodeproject.org/files/ENCFF734DAT/@@download/ENCFF734DAT.bam released s3://encode-public/2020/06/02/02003974-53d3-416f-bc27-14925816b20d/ENCFF734DAT.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF153HYB fastq fastq reads ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF374JTH/ 2993816137 Michael Snyder, Stanford 2fedd3198e8eb308dfcbe27f78b3ea70 SRA:SRR5112387 https://www.encodeproject.org/files/ENCFF153HYB/@@download/ENCFF153HYB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/d87ecbff-6440-404b-84e9-92f63b1bb9a4/ENCFF153HYB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF374JTH fastq fastq reads ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF153HYB/ 3051909955 Michael Snyder, Stanford 313337bd5b6f116b4f12f5bd59d6786e SRA:SRR5112387 https://www.encodeproject.org/files/ENCFF374JTH/@@download/ENCFF374JTH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/210ca545-d508-4983-a103-fbcbd4c69350/ENCFF374JTH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF031FZB bam bam alignments GRCh38 ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF374JTH/, /files/ENCFF153HYB/ 5094883310 ENCODE Processing Pipeline 6e6a71216b569ebf4490e4b3983dea04 https://www.encodeproject.org/files/ENCFF031FZB/@@download/ENCFF031FZB.bam released s3://encode-public/2016/08/13/bb18e8d6-5ca1-4caa-9a98-63412e4d646c/ENCFF031FZB.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF350KQI bam bam unfiltered alignments GRCh38 ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF374JTH/, /files/ENCFF153HYB/ 6033023473 ENCODE Processing Pipeline b9f1292a08c1a18dbc7775eb57e9a9e5 https://www.encodeproject.org/files/ENCFF350KQI/@@download/ENCFF350KQI.bam released s3://encode-public/2016/08/13/c0c41301-97fc-426b-9f14-6ac34c0a3b26/ENCFF350KQI.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF571SND bam bam alignments hg19 ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF374JTH/, /files/ENCFF153HYB/ 5093688343 ENCODE Processing Pipeline 3790fa83c75566bd7f178f03a204051d https://www.encodeproject.org/files/ENCFF571SND/@@download/ENCFF571SND.bam released s3://encode-public/2016/09/11/b460e28b-7dc6-4e5f-82db-cf4d150c4b32/ENCFF571SND.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF128CNZ bam bam unfiltered alignments hg19 ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF374JTH/, /files/ENCFF153HYB/ 6026693532 ENCODE Processing Pipeline a63cbbdda629577f0fd7bc6a19bcf03a https://www.encodeproject.org/files/ENCFF128CNZ/@@download/ENCFF128CNZ.bam released s3://encode-public/2016/09/11/080fdc5c-22a5-4aa2-b62d-1ca5b386b4ce/ENCFF128CNZ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF928CJD bam bam alignments GRCh38 ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF153HYB/, /files/ENCFF374JTH/ 5172058169 ENCODE Processing Pipeline 1f31851383205adea315febe6a75bc58 https://www.encodeproject.org/files/ENCFF928CJD/@@download/ENCFF928CJD.bam released s3://encode-public/2020/06/02/d900cdc2-643c-4b09-ac80-abcc2716d8f3/ENCFF928CJD.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF737ERX bam bam unfiltered alignments GRCh38 ENCSR537CWQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF153HYB/, /files/ENCFF374JTH/ 6107133855 ENCODE Processing Pipeline 333f2687a7ece5f251cb78903d7c200a https://www.encodeproject.org/files/ENCFF737ERX/@@download/ENCFF737ERX.bam released s3://encode-public/2020/06/02/06d3c481-be13-4743-8237-bc1fe05bf315/ENCFF737ERX.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF784DBC fastq fastq reads ENCSR557RDB Control ChIP-seq /human-donors/ENCDO082FOL/ CL:0000775 neutrophil primary cell Homo sapiens DNA 2016-11-17 ENCODE 200-600 1 1_1 76 single-ended 1309100221 Bradley Bernstein, Broad 7b3737171ea06f4d2dc6854051e6265a SRA:SRR5338933 https://www.encodeproject.org/files/ENCFF784DBC/@@download/ENCFF784DBC.fastq.gz Illumina HiSeq 2500 /files/ENCFF410DXF/, /files/ENCFF170LRD/, /files/ENCFF485UYV/ released s3://encode-public/2016/11/04/6570dddb-63db-491e-962e-564efedb1946/ENCFF784DBC.fastq.gz ENCFF410DXF fastq fastq reads ENCSR557RDB Control ChIP-seq /human-donors/ENCDO082FOL/ CL:0000775 neutrophil primary cell Homo sapiens DNA 2016-11-17 ENCODE 200-600 1 1_1 76 single-ended 1274148286 Bradley Bernstein, Broad 6074e7e51876174f5923d51b5c2bea9b SRA:SRR5338934 https://www.encodeproject.org/files/ENCFF410DXF/@@download/ENCFF410DXF.fastq.gz Illumina HiSeq 2500 /files/ENCFF784DBC/, /files/ENCFF170LRD/, /files/ENCFF485UYV/ released s3://encode-public/2016/11/04/07abcede-1fc2-4bd1-9c32-33b973ee7576/ENCFF410DXF.fastq.gz ENCFF170LRD fastq fastq reads ENCSR557RDB Control ChIP-seq /human-donors/ENCDO082FOL/ CL:0000775 neutrophil primary cell Homo sapiens DNA 2016-11-17 ENCODE 200-600 1 1_1 76 single-ended 1281379015 Bradley 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https://www.encodeproject.org/files/ENCFF626QWN/@@download/ENCFF626QWN.bam released s3://encode-public/2016/08/02/b0250f4d-b9a8-495d-a630-70d714359498/ENCFF626QWN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF527LEY bigWig bigWig read-depth normalized signal dm3 ENCSR234AVI Control ChIP-seq /fly-donors/ENCDO823WON/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38187/'], '@type': ['Target', 'Item'], 'name': 'CG12104-dmelanogaster', 'label': 'CG12104', '@id': '/targets/CG12104-dmelanogaster/', 'title': 'CG12104 (Drosophila melanogaster)', 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Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38187/'], '@type': ['Target', 'Item'], 'name': 'CG12104-dmelanogaster', 'label': 'CG12104', '@id': '/targets/CG12104-dmelanogaster/', 'title': 'CG12104 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'fca37f53-3144-483c-8992-d52fbb7649db', 'status': 'released'} dm3 3L 1591226 1612666 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF788ISK/, /files/ENCFF479RCH/ 466202431 Kevin White, UChicago 17449ca8f53e01eaef5e48100e49481f https://www.encodeproject.org/files/ENCFF229RXZ/@@download/ENCFF229RXZ.bam released s3://encode-public/2016/08/05/09d2e09d-3ca5-44a7-bee0-8d8a0632f2d4/ENCFF229RXZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF888IPP bigWig bigWig read-depth normalized signal dm6 ENCSR234AVI Control ChIP-seq /fly-donors/ENCDO823WON/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38187/'], '@type': ['Target', 'Item'], 'name': 'CG12104-dmelanogaster', 'label': 'CG12104', '@id': '/targets/CG12104-dmelanogaster/', 'title': 'CG12104 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'fca37f53-3144-483c-8992-d52fbb7649db', 'status': 'released'} dm3 3L 1591226 1612666 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF229RXZ/ 17209592 Kevin White, UChicago eabbecdb51f40495a9697ee65c23f854 https://www.encodeproject.org/files/ENCFF888IPP/@@download/ENCFF888IPP.bigWig released s3://encode-public/2016/08/05/c83ab589-bba8-4f0c-b0c4-899188007096/ENCFF888IPP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF988FRL bigWig bigWig signal of unique reads dm6 ENCSR234AVI Control ChIP-seq /fly-donors/ENCDO823WON/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38187/'], '@type': ['Target', 'Item'], 'name': 'CG12104-dmelanogaster', 'label': 'CG12104', '@id': '/targets/CG12104-dmelanogaster/', 'title': 'CG12104 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'fca37f53-3144-483c-8992-d52fbb7649db', 'status': 'released'} dm3 3L 1591226 1612666 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF229RXZ/ 17278121 Kevin White, UChicago 3bed3cfe7a141c7addec68d7001246b4 https://www.encodeproject.org/files/ENCFF988FRL/@@download/ENCFF988FRL.bigWig released s3://encode-public/2016/08/05/290ab833-83d2-4a08-82a3-669dc0f7f305/ENCFF988FRL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF951XVQ bam bam unfiltered alignments hg19 ENCSR931XLP Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF123QZN/, /files/ENCFF807MUK/ 1488530218 ENCODE Processing Pipeline 72d0dc4a08f284d225960633c4110a62 https://www.encodeproject.org/files/ENCFF951XVQ/@@download/ENCFF951XVQ.bam released s3://encode-public/2018/02/21/e2132cd6-2e4f-4f29-8e9b-0b860ecc4c6f/ENCFF951XVQ.bam ENCODE3 hg19 archived ENCFF123QZN fastq fastq reads ENCSR931XLP Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1332633878 Richard Myers, HAIB 3f5fd554a09afa58560acfbfe9868b3e SRA:SRR5339569 https://www.encodeproject.org/files/ENCFF123QZN/@@download/ENCFF123QZN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/d62f2feb-5caf-4014-a3f7-2e0a1e581d52/ENCFF123QZN.fastq.gz ENCFF200LFK bam bam alignments hg19 ENCSR931XLP Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF123QZN/, /files/ENCFF807MUK/ 1109902890 ENCODE Processing Pipeline 778de943b56b20c64f3be08f39099d81 https://www.encodeproject.org/files/ENCFF200LFK/@@download/ENCFF200LFK.bam released s3://encode-public/2016/01/15/4aa6606d-745e-41b9-a970-3510bb449aa9/ENCFF200LFK.bam ENCODE3 hg19 archived ENCFF856RZO bam bam unfiltered alignments GRCh38 ENCSR931XLP Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF123QZN/, /files/ENCFF643CGH/ 1495474243 ENCODE Processing Pipeline ff23693218e6fbe060bdf039a2cef709 https://www.encodeproject.org/files/ENCFF856RZO/@@download/ENCFF856RZO.bam released s3://encode-public/2016/05/06/765e27e2-727d-4e03-97d0-a418a7e9b417/ENCFF856RZO.bam ENCODE3 GRCh38 archived ENCFF337WHA bam bam alignments GRCh38 ENCSR931XLP Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF123QZN/, /files/ENCFF643CGH/ 1110203114 ENCODE Processing Pipeline dd4178e2d1636a5c421aa153564a4cb0 https://www.encodeproject.org/files/ENCFF337WHA/@@download/ENCFF337WHA.bam released s3://encode-public/2016/05/06/f26fa218-8d0d-403f-9da8-1db6b8fcc966/ENCFF337WHA.bam ENCODE3 GRCh38 archived ENCFF017SOS bam bam unfiltered alignments GRCh38 ENCSR931XLP Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF123QZN/ 1487907386 ENCODE Processing Pipeline 40e7516a1dfe0e85391ae2cb4214bea2 https://www.encodeproject.org/files/ENCFF017SOS/@@download/ENCFF017SOS.bam released s3://encode-public/2020/06/06/1e99ae8c-f888-4a1e-b5ce-fdaf009b8452/ENCFF017SOS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF477SAP bam bam alignments GRCh38 ENCSR931XLP Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF123QZN/ 1173363500 ENCODE Processing Pipeline f33b695686238f884bbd655e145b1cda https://www.encodeproject.org/files/ENCFF477SAP/@@download/ENCFF477SAP.bam released s3://encode-public/2020/06/06/6920f85e-3d12-47a6-9e55-ef176c35648b/ENCFF477SAP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF693HKM bam bam unfiltered alignments GRCh38 ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF260WWT/, /files/ENCFF110MCL/, /files/ENCFF173CNB/, /files/ENCFF385YRR/ 1957719399 ENCODE Processing Pipeline 4e82b95f1923277eab23c5d4a5bebf22 https://www.encodeproject.org/files/ENCFF693HKM/@@download/ENCFF693HKM.bam released s3://encode-public/2020/10/08/7e8f8556-9c3e-43f5-8cfd-5ddf3806ebd5/ENCFF693HKM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF171TAQ bam bam alignments GRCh38 ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF260WWT/, /files/ENCFF110MCL/, /files/ENCFF173CNB/, /files/ENCFF385YRR/ 1158825702 ENCODE Processing Pipeline cb433c12179b7122fb18b00c8cb446c8 https://www.encodeproject.org/files/ENCFF171TAQ/@@download/ENCFF171TAQ.bam released s3://encode-public/2020/10/08/be6a129f-5b7d-4245-81fe-a3f838e92795/ENCFF171TAQ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF173CNB fastq fastq reads ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 191125594 Zhiping Weng, UMass 0c1a9d311b60ccb79d978b5612cb1f4f SRA:SRR787563 https://www.encodeproject.org/files/ENCFF173CNB/@@download/ENCFF173CNB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/25/a8620e03-bd5a-480f-a203-466f74536b06/ENCFF173CNB.fastq.gz low read length ENCFF385YRR fastq fastq reads ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 1034574951 Zhiping Weng, UMass 8b6c522417ee64eba944c1b88b32c455 SRA:SRR787564 https://www.encodeproject.org/files/ENCFF385YRR/@@download/ENCFF385YRR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/c5236502-620d-4f4e-a179-87c929b489d7/ENCFF385YRR.fastq.gz low read length ENCFF260WWT fastq fastq reads ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 single-ended 443313158 Zhiping Weng, UMass 45055e0429f77aea92c3c912d1ab87a6 SRA:SRR899562 https://www.encodeproject.org/files/ENCFF260WWT/@@download/ENCFF260WWT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/7c232928-fbec-4be6-96df-3cc4fe07a30b/ENCFF260WWT.fastq.gz low read length ENCFF305ASC bam bam unfiltered alignments hg19 ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF173CNB/, /files/ENCFF807MUK/, /files/ENCFF385YRR/, /files/ENCFF260WWT/ 1980933069 ENCODE Processing Pipeline ae1f0793f69eff7a8576319700899287 https://www.encodeproject.org/files/ENCFF305ASC/@@download/ENCFF305ASC.bam released s3://encode-public/2016/12/19/47e2f5a7-5eab-4bc5-b0b2-2dd6b55bd46a/ENCFF305ASC.bam ENCODE3 hg19 archived low read length ENCFF756WPZ bam bam unfiltered alignments GRCh38 ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF173CNB/, /files/ENCFF643CGH/, /files/ENCFF385YRR/, /files/ENCFF260WWT/ 1990915170 ENCODE Processing Pipeline b043c378d4228ec40db68fc562d0468c https://www.encodeproject.org/files/ENCFF756WPZ/@@download/ENCFF756WPZ.bam released s3://encode-public/2016/12/19/7067a0df-b7d7-4c59-be29-c0b86207ddae/ENCFF756WPZ.bam ENCODE3 GRCh38 archived low read length ENCFF136PLS bam bam alignments hg19 ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF173CNB/, /files/ENCFF807MUK/, /files/ENCFF385YRR/, /files/ENCFF260WWT/ 994301397 ENCODE Processing Pipeline d9dfba85f99ad76c3816fff85ef7e213 https://www.encodeproject.org/files/ENCFF136PLS/@@download/ENCFF136PLS.bam released s3://encode-public/2016/12/19/4091636f-ded3-406a-b27b-f1240a12cca0/ENCFF136PLS.bam ENCODE3 hg19 archived low read length ENCFF450SEM bam bam alignments GRCh38 ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF173CNB/, /files/ENCFF643CGH/, /files/ENCFF385YRR/, /files/ENCFF260WWT/ 994050019 ENCODE Processing Pipeline 8de610f34365368d4df6a542fd59e56d https://www.encodeproject.org/files/ENCFF450SEM/@@download/ENCFF450SEM.bam released s3://encode-public/2016/12/19/f9b6ddd8-af37-4d31-b78b-4eafd56bb5dd/ENCFF450SEM.bam ENCODE3 GRCh38 archived low read length ENCFF233APW tagAlign tagAlign alignments hg19 ENCSR639HUV Control ChIP-seq /human-donors/ENCDO686GEI/ UBERON:0001774 muscle of trunk tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/ENCFF260WWT/, /files/ENCFF385YRR/, /files/ENCFF173CNB/ 126953744 Anshul Kundaje, Stanford 9720da8504b367ce513c1ef0e2e5acaa https://www.encodeproject.org/files/ENCFF233APW/@@download/ENCFF233APW.tagAlign.gz archived s3://encode-public/2016/02/11/d5a466ea-0198-40b9-90c3-8424e4527f63/ENCFF233APW.tagAlign.gz Lab custom hg19 archived low read length ENCFF487QNB bam bam unfiltered alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF724YLH/, /files/ENCFF280LQL/, /files/ENCFF110MCL/, /files/ENCFF563NMA/, /files/ENCFF588FZR/, /files/ENCFF868GZS/, /files/ENCFF670FUY/, /files/ENCFF305YDT/, /files/ENCFF698YKB/ 2421355146 ENCODE Processing Pipeline 90712a477590b1a69a0bf69ce5cb242b https://www.encodeproject.org/files/ENCFF487QNB/@@download/ENCFF487QNB.bam released s3://encode-public/2020/09/19/5e1ebe3c-4f7c-42a0-9293-c21c1bf30a4c/ENCFF487QNB.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF218WDY fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 353355266 Bradley Bernstein, Broad be7511e473ad61c357ffd7d007dab0c8 SRA:SRR10838202 https://www.encodeproject.org/files/ENCFF218WDY/@@download/ENCFF218WDY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/9f3bca08-1aaf-440b-943a-9fd12215bf35/ENCFF218WDY.fastq.gz inconsistent platforms ENCFF688CVD fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_2 76 single-ended 1077338724 Bradley Bernstein, Broad aca08b407c122ee1fc5335a4aa9a523a SRA:SRR10838210 https://www.encodeproject.org/files/ENCFF688CVD/@@download/ENCFF688CVD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/cd88dec2-5cc1-4e73-8ace-905941d3516e/ENCFF688CVD.fastq.gz inconsistent platforms ENCFF582FZN fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 355819784 Bradley Bernstein, Broad 7dfb99d4de10bba96f4f77f16efbcbce SRA:SRR10838203 https://www.encodeproject.org/files/ENCFF582FZN/@@download/ENCFF582FZN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/118a6143-34fe-4ea9-9190-d225cbe659a2/ENCFF582FZN.fastq.gz inconsistent platforms ENCFF049MGK fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_2 76 single-ended 1112920882 Bradley Bernstein, Broad 87b1e7982e7cfdd397a51b3362c04d12 SRA:SRR10838211 https://www.encodeproject.org/files/ENCFF049MGK/@@download/ENCFF049MGK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/80c87f97-f0eb-46b4-bab4-d40034598e7a/ENCFF049MGK.fastq.gz inconsistent platforms ENCFF588FZR fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1 76 single-ended 312940145 Bradley Bernstein, Broad e2e7f6f3bc193e449e5b2292b2e97641 SRA:SRR10838206 https://www.encodeproject.org/files/ENCFF588FZR/@@download/ENCFF588FZR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/e14db947-dc8f-44eb-ac41-4dc163dee2dd/ENCFF588FZR.fastq.gz inconsistent platforms ENCFF305YDT fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1 76 single-ended 321152163 Bradley Bernstein, Broad 576e9c10a107f6e17bf16ab36c1b5be4 SRA:SRR10838207 https://www.encodeproject.org/files/ENCFF305YDT/@@download/ENCFF305YDT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/2e2e04b3-edb7-4e5a-9cfa-a4cb6863b7b1/ENCFF305YDT.fastq.gz inconsistent platforms ENCFF724YLH fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1 76 single-ended 313357561 Bradley Bernstein, Broad 329582a05e36c330b8f3e040f2592c93 SRA:SRR10838208 https://www.encodeproject.org/files/ENCFF724YLH/@@download/ENCFF724YLH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/a71832c0-7a20-49eb-88ab-c75229bd0f29/ENCFF724YLH.fastq.gz inconsistent platforms ENCFF670FUY fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1 76 single-ended 312812678 Bradley Bernstein, Broad 1146d7dc793fb40e3669b643b777a4c7 SRA:SRR10838209 https://www.encodeproject.org/files/ENCFF670FUY/@@download/ENCFF670FUY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/fd4434a1-1f05-46f9-8455-40fd147c67a6/ENCFF670FUY.fastq.gz inconsistent platforms ENCFF053ELM fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 684899899 Bradley Bernstein, Broad d1f4ce7867771167bb3285c7d7b103d4 SRA:SRR10838218 https://www.encodeproject.org/files/ENCFF053ELM/@@download/ENCFF053ELM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/aea2b62d-2d3a-4371-a3c4-dfdf85814853/ENCFF053ELM.fastq.gz inconsistent platforms ENCFF627WIL fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 715936960 Bradley Bernstein, Broad db86269a69ad53958faec94fe2483d7d SRA:SRR10838219 https://www.encodeproject.org/files/ENCFF627WIL/@@download/ENCFF627WIL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/11b6060a-42b0-49f4-a2a7-3ecc8e31e5d5/ENCFF627WIL.fastq.gz inconsistent platforms ENCFF415CMT bam bam unfiltered alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF724YLH/, /files/ENCFF280LQL/, /files/ENCFF868GZS/, /files/ENCFF807MUK/, /files/ENCFF670FUY/, /files/ENCFF305YDT/, /files/ENCFF588FZR/, /files/ENCFF698YKB/, /files/ENCFF563NMA/ 2429261756 ENCODE Processing Pipeline 655150a0e9e23d4ac88459b69c473e01 https://www.encodeproject.org/files/ENCFF415CMT/@@download/ENCFF415CMT.bam released s3://encode-public/2019/08/30/57e1c042-f093-496f-b654-11d24a0290ee/ENCFF415CMT.bam ENCODE3 hg19 archived inconsistent platforms ENCFF568VAB bam bam unfiltered alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF724YLH/, /files/ENCFF643CGH/, /files/ENCFF280LQL/, /files/ENCFF868GZS/, /files/ENCFF670FUY/, /files/ENCFF305YDT/, /files/ENCFF588FZR/, /files/ENCFF698YKB/, /files/ENCFF563NMA/ 2438652061 ENCODE Processing Pipeline 88da756b76cd079491765514c4c77aac https://www.encodeproject.org/files/ENCFF568VAB/@@download/ENCFF568VAB.bam released s3://encode-public/2019/08/30/777b5a69-4dc0-4ff1-91b5-0022242ab79a/ENCFF568VAB.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF498FXO bam bam alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF724YLH/, /files/ENCFF280LQL/, /files/ENCFF868GZS/, /files/ENCFF807MUK/, /files/ENCFF670FUY/, /files/ENCFF305YDT/, /files/ENCFF588FZR/, /files/ENCFF698YKB/, /files/ENCFF563NMA/ 2041549106 ENCODE Processing Pipeline 9b9cccbf5b1ab6870ec770c949117d66 https://www.encodeproject.org/files/ENCFF498FXO/@@download/ENCFF498FXO.bam released s3://encode-public/2019/08/30/e4b31932-b7a7-4cac-8134-51b39852e62f/ENCFF498FXO.bam ENCODE3 hg19 archived inconsistent platforms ENCFF620FEP bam bam unfiltered alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF763QXK/, /files/ENCFF133OAY/, /files/ENCFF807MUK/, /files/ENCFF627WIL/, /files/ENCFF053ELM/, /files/ENCFF118KSO/, /files/ENCFF733NVE/, /files/ENCFF218WDY/, /files/ENCFF582FZN/ 3936473802 ENCODE Processing Pipeline a25794d44741fad9fec92876a96fd5aa https://www.encodeproject.org/files/ENCFF620FEP/@@download/ENCFF620FEP.bam released s3://encode-public/2019/08/30/8f934ab8-0762-44ad-9ce9-ccc54d03771f/ENCFF620FEP.bam ENCODE3 hg19 archived inconsistent platforms ENCFF652GOG bam bam unfiltered alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF643CGH/, /files/ENCFF763QXK/, /files/ENCFF133OAY/, /files/ENCFF627WIL/, /files/ENCFF053ELM/, /files/ENCFF118KSO/, /files/ENCFF733NVE/, /files/ENCFF218WDY/, /files/ENCFF582FZN/ 3947290344 ENCODE Processing Pipeline 0cffd1432a0933354c5a0dc299458923 https://www.encodeproject.org/files/ENCFF652GOG/@@download/ENCFF652GOG.bam released s3://encode-public/2019/08/30/f588d1ce-1844-43ac-badd-012c0d2c3502/ENCFF652GOG.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF329YPE bam bam alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF724YLH/, /files/ENCFF643CGH/, /files/ENCFF280LQL/, /files/ENCFF868GZS/, /files/ENCFF670FUY/, /files/ENCFF305YDT/, /files/ENCFF588FZR/, /files/ENCFF698YKB/, /files/ENCFF563NMA/ 2044013221 ENCODE Processing Pipeline 9b53adf6cc7505412bc24dd891e47163 https://www.encodeproject.org/files/ENCFF329YPE/@@download/ENCFF329YPE.bam released s3://encode-public/2019/08/30/b42e9c1c-54ce-4cdd-a218-140864db6ddf/ENCFF329YPE.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF354SNK bam bam alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF643CGH/, /files/ENCFF763QXK/, /files/ENCFF133OAY/, /files/ENCFF627WIL/, /files/ENCFF053ELM/, /files/ENCFF118KSO/, /files/ENCFF733NVE/, /files/ENCFF218WDY/, /files/ENCFF582FZN/ 3320267059 ENCODE Processing Pipeline e1ce2f17741e748eb300442811d32c9e https://www.encodeproject.org/files/ENCFF354SNK/@@download/ENCFF354SNK.bam released s3://encode-public/2019/08/30/ed4be071-f595-4cde-a7c8-f55454b71de8/ENCFF354SNK.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF300BGK bam bam unfiltered alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF688CVD/, /files/ENCFF807MUK/, /files/ENCFF116APJ/, /files/ENCFF355WSL/, /files/ENCFF049MGK/ 5307990649 ENCODE Processing Pipeline 95b74230377fdfe77a315abe09a3b8fd https://www.encodeproject.org/files/ENCFF300BGK/@@download/ENCFF300BGK.bam released s3://encode-public/2019/08/30/9e64ef68-ac6c-40b2-8abd-e1e518ac5472/ENCFF300BGK.bam ENCODE3 hg19 archived inconsistent platforms ENCFF775NKQ bam bam alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF763QXK/, /files/ENCFF133OAY/, /files/ENCFF807MUK/, /files/ENCFF627WIL/, /files/ENCFF053ELM/, /files/ENCFF118KSO/, /files/ENCFF733NVE/, /files/ENCFF218WDY/, /files/ENCFF582FZN/ 3315793670 ENCODE Processing Pipeline 32a82ae6ac96b209d94f5301453daf0c https://www.encodeproject.org/files/ENCFF775NKQ/@@download/ENCFF775NKQ.bam released s3://encode-public/2019/08/30/30530a0f-0f7d-402d-a58a-d708b82cac94/ENCFF775NKQ.bam ENCODE3 hg19 archived inconsistent platforms ENCFF120PCM bam bam unfiltered alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF688CVD/, /files/ENCFF643CGH/, /files/ENCFF116APJ/, /files/ENCFF355WSL/, /files/ENCFF049MGK/ 5320350807 ENCODE Processing Pipeline cf82e6bf9f39e423c549ebc174cd8b4c https://www.encodeproject.org/files/ENCFF120PCM/@@download/ENCFF120PCM.bam released s3://encode-public/2019/08/30/33e19fb5-45cb-4415-ad6d-cfe4249282af/ENCFF120PCM.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF263SAO bam bam alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF688CVD/, /files/ENCFF807MUK/, /files/ENCFF116APJ/, /files/ENCFF355WSL/, /files/ENCFF049MGK/ 4328557834 ENCODE Processing Pipeline 86cd44a9799c62d86b06eb97e98f025d https://www.encodeproject.org/files/ENCFF263SAO/@@download/ENCFF263SAO.bam released s3://encode-public/2019/08/30/a6e7380c-fb41-4bfb-98eb-6a04cc114b6e/ENCFF263SAO.bam ENCODE3 hg19 archived inconsistent platforms ENCFF890OCH bam bam alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF688CVD/, /files/ENCFF643CGH/, /files/ENCFF116APJ/, /files/ENCFF355WSL/, /files/ENCFF049MGK/ 4336652548 ENCODE Processing Pipeline 1c888f2e27a1d516253239273665625c https://www.encodeproject.org/files/ENCFF890OCH/@@download/ENCFF890OCH.bam released s3://encode-public/2019/08/30/e0991aa9-597b-4e78-bec4-e5d49b439371/ENCFF890OCH.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF116APJ fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1881956642 Bradley Bernstein, Broad f0b810959f0df709c3f9aa5a88e6cf73 SRA:SRR10838216 https://www.encodeproject.org/files/ENCFF116APJ/@@download/ENCFF116APJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/41edbd4d-450c-42b5-a275-2f73f18bd906/ENCFF116APJ.fastq.gz inconsistent platforms ENCFF355WSL fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1909771965 Bradley Bernstein, Broad 9cc49ca9ece8d8087f0b8f64d4046da1 SRA:SRR10838217 https://www.encodeproject.org/files/ENCFF355WSL/@@download/ENCFF355WSL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/c5d96ace-83fb-4e41-afe8-7a6fc431f307/ENCFF355WSL.fastq.gz inconsistent platforms ENCFF118KSO fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 326108190 Bradley Bernstein, Broad d2f56bc01c61362ab7440179129d1121 SRA:SRR10838220 https://www.encodeproject.org/files/ENCFF118KSO/@@download/ENCFF118KSO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/b3acc239-b547-493f-a161-a45c2562e730/ENCFF118KSO.fastq.gz inconsistent platforms ENCFF733NVE fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 320523879 Bradley Bernstein, Broad c3e61c21c1394f9be47c5968210227f1 SRA:SRR10838221 https://www.encodeproject.org/files/ENCFF733NVE/@@download/ENCFF733NVE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/771adb44-4526-4f9a-be75-b7cfb103297c/ENCFF733NVE.fastq.gz inconsistent platforms ENCFF563NMA fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_2 76 single-ended 183070247 Bradley Bernstein, Broad da556d3c83f5463195341bb4312a3843 SRA:SRR10838212 https://www.encodeproject.org/files/ENCFF563NMA/@@download/ENCFF563NMA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/295ae070-9b71-483a-be39-bdad79fa5521/ENCFF563NMA.fastq.gz inconsistent platforms ENCFF280LQL fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_2 76 single-ended 129580279 Bradley Bernstein, Broad e08b5970a59e1a48f4c151c2f5ff04e0 SRA:SRR10838213 https://www.encodeproject.org/files/ENCFF280LQL/@@download/ENCFF280LQL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/5ba665d0-78c0-45fb-8481-e0e774bb86ba/ENCFF280LQL.fastq.gz inconsistent platforms ENCFF763QXK fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 661831009 Bradley Bernstein, Broad 6fdf0a0f411ee2067803142f51b89444 SRA:SRR10838204 https://www.encodeproject.org/files/ENCFF763QXK/@@download/ENCFF763QXK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/ba89fb53-a56f-4d3f-913e-052f3ea6f5d8/ENCFF763QXK.fastq.gz inconsistent platforms ENCFF133OAY fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 647665112 Bradley Bernstein, Broad d4db072e44e4e90b0e2da4040b16e284 SRA:SRR10838205 https://www.encodeproject.org/files/ENCFF133OAY/@@download/ENCFF133OAY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/35f85ca3-d163-4f6b-bdde-4c2e41037f73/ENCFF133OAY.fastq.gz inconsistent platforms ENCFF698YKB fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_2 76 single-ended 414287990 Bradley Bernstein, Broad 0122614fd010b3ee22a2e33917b1c0ff SRA:SRR10838214 https://www.encodeproject.org/files/ENCFF698YKB/@@download/ENCFF698YKB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/9d5f1aea-3674-40d8-a792-0169f66db598/ENCFF698YKB.fastq.gz inconsistent platforms ENCFF868GZS fastq fastq reads ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_2 76 single-ended 365391428 Bradley Bernstein, Broad 4e963724c823d87850755e94453e6c81 SRA:SRR10838215 https://www.encodeproject.org/files/ENCFF868GZS/@@download/ENCFF868GZS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/08/14/454b993f-7dd0-46fe-abd8-16cedcd12439/ENCFF868GZS.fastq.gz inconsistent platforms ENCFF958DAV bam bam unfiltered alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF116APJ/, /files/ENCFF355WSL/ 3441983941 ENCODE Processing Pipeline 33a1a4ebdfaf0b58c01b2dbda8ad04a7 https://www.encodeproject.org/files/ENCFF958DAV/@@download/ENCFF958DAV.bam archived s3://encode-public/2017/08/04/c0d5a4f3-f159-4f38-a530-92a8b7b75d03/ENCFF958DAV.bam ENCODE3 hg19 archived inconsistent platforms ENCFF579HSF bam bam alignments hg19 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF116APJ/, /files/ENCFF355WSL/ 2801733535 ENCODE Processing Pipeline 6999e2f9ff99ffc2ab77dbbf878794ed https://www.encodeproject.org/files/ENCFF579HSF/@@download/ENCFF579HSF.bam archived s3://encode-public/2017/08/04/959ba15e-e19a-4702-9498-41503478d5e1/ENCFF579HSF.bam ENCODE3 hg19 archived inconsistent platforms ENCFF793ZBA bam bam unfiltered alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF116APJ/, /files/ENCFF355WSL/ 3450804773 ENCODE Processing Pipeline 80e4d2032709a899d64d4046fc3d3ba8 https://www.encodeproject.org/files/ENCFF793ZBA/@@download/ENCFF793ZBA.bam archived s3://encode-public/2017/08/04/93bf1fc8-7907-49e2-8edf-132b6813eda3/ENCFF793ZBA.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF495PLA bam bam alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF116APJ/, /files/ENCFF355WSL/ 2807178982 ENCODE Processing Pipeline 7d05f99ed1881faae0b5c01913712dd6 https://www.encodeproject.org/files/ENCFF495PLA/@@download/ENCFF495PLA.bam archived s3://encode-public/2017/08/04/3eb76868-0776-40af-9767-1b174bf9dc47/ENCFF495PLA.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF028LSG bam bam unfiltered alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF355WSL/, /files/ENCFF688CVD/, /files/ENCFF116APJ/, /files/ENCFF049MGK/ 5367756411 ENCODE Processing Pipeline f97b0c93de0535af50cde33be950d015 https://www.encodeproject.org/files/ENCFF028LSG/@@download/ENCFF028LSG.bam released s3://encode-public/2020/09/19/9e135523-ecd5-4132-aeaa-24981338ce1a/ENCFF028LSG.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF768ZGO bam bam unfiltered alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF763QXK/, /files/ENCFF627WIL/, /files/ENCFF053ELM/, /files/ENCFF133OAY/, /files/ENCFF733NVE/, /files/ENCFF110MCL/, /files/ENCFF582FZN/, /files/ENCFF218WDY/, /files/ENCFF118KSO/ 3928830468 ENCODE Processing Pipeline 118d3aade3ca712a9001b135f078b41d https://www.encodeproject.org/files/ENCFF768ZGO/@@download/ENCFF768ZGO.bam released s3://encode-public/2020/09/19/b2789cda-102e-48ef-8bf0-e538d11c5eeb/ENCFF768ZGO.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF666LWI bam bam alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF763QXK/, /files/ENCFF627WIL/, /files/ENCFF053ELM/, /files/ENCFF133OAY/, /files/ENCFF733NVE/, /files/ENCFF110MCL/, /files/ENCFF582FZN/, /files/ENCFF218WDY/, /files/ENCFF118KSO/ 3343844299 ENCODE Processing Pipeline 6a337cd1fc744e8de5441487ea737426 https://www.encodeproject.org/files/ENCFF666LWI/@@download/ENCFF666LWI.bam released s3://encode-public/2020/09/19/c93c2621-8e2a-4e33-a859-3e1ab1d99b98/ENCFF666LWI.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF843QLT bam bam alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 3 3_1, 3_2 76 /files/ENCFF724YLH/, /files/ENCFF280LQL/, /files/ENCFF110MCL/, /files/ENCFF563NMA/, /files/ENCFF588FZR/, /files/ENCFF868GZS/, /files/ENCFF670FUY/, /files/ENCFF305YDT/, /files/ENCFF698YKB/ 2040056181 ENCODE Processing Pipeline 8ed99760ecdf4d772aca989cec1ef3b8 https://www.encodeproject.org/files/ENCFF843QLT/@@download/ENCFF843QLT.bam released s3://encode-public/2020/09/19/19a12946-ccf7-4aa9-be14-d82c1ca40a39/ENCFF843QLT.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF571YWF bam bam alignments GRCh38 ENCSR651ISB Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF355WSL/, /files/ENCFF688CVD/, /files/ENCFF116APJ/, /files/ENCFF049MGK/ 4441370063 ENCODE Processing Pipeline 7a393a5b321c6c26b0b930034302d75f https://www.encodeproject.org/files/ENCFF571YWF/@@download/ENCFF571YWF.bam released s3://encode-public/2020/09/19/aea70209-f602-4cd3-9968-d94983892139/ENCFF571YWF.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF231GDH bam bam unfiltered alignments hg19 ENCSR776RXA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5437/'], '@type': ['Target', 'Item'], 'name': 'POLR2H-human', 'label': 'POLR2H', '@id': '/targets/POLR2H-human/', 'title': 'POLR2H (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '9b8befd9-1033-41dd-8fd9-eaeb89e1847c', 'status': 'released'} hg19 3 183960243 184172462 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF096LLU/, /files/ENCFF026HSI/ 4249552350 ENCODE Processing Pipeline 8755f861ff53c14feec6b0b43f6db717 https://www.encodeproject.org/files/ENCFF231GDH/@@download/ENCFF231GDH.bam released s3://encode-public/2018/02/22/34f579d3-074d-42f9-8f09-2bd8040a0d27/ENCFF231GDH.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF026HSI fastq fastq reads ENCSR776RXA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5437/'], '@type': ['Target', 'Item'], 'name': 'POLR2H-human', 'label': 'POLR2H', '@id': '/targets/POLR2H-human/', 'title': 'POLR2H (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '9b8befd9-1033-41dd-8fd9-eaeb89e1847c', 'status': 'released'} hg19 3 183960243 184172462 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF096LLU/ 1950575200 Michael Snyder, Stanford 32dba9eb12e4b77028719f43e5210a66 SRA:SRR5112067 https://www.encodeproject.org/files/ENCFF026HSI/@@download/ENCFF026HSI.fastq.gz Illumina HiSeq 2000 /files/ENCFF203GDE/, /files/ENCFF671HJP/ released s3://encode-public/2016/03/31/8446db49-2759-4b7e-a5aa-9e5be36cec2f/ENCFF026HSI.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF096LLU fastq fastq reads ENCSR776RXA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5437/'], '@type': ['Target', 'Item'], 'name': 'POLR2H-human', 'label': 'POLR2H', '@id': '/targets/POLR2H-human/', 'title': 'POLR2H (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '9b8befd9-1033-41dd-8fd9-eaeb89e1847c', 'status': 'released'} hg19 3 183960243 184172462 DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF026HSI/ 1842608019 Michael Snyder, Stanford 0ede51e44678eb09b49faf4cbf6e88fd SRA:SRR5112067 https://www.encodeproject.org/files/ENCFF096LLU/@@download/ENCFF096LLU.fastq.gz Illumina HiSeq 2000 /files/ENCFF203GDE/, /files/ENCFF671HJP/ released s3://encode-public/2016/03/31/886fb797-a3d5-42bb-8bd4-1f106c2ae130/ENCFF096LLU.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF469YUW bam bam alignments hg19 ENCSR776RXA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5437/'], '@type': ['Target', 'Item'], 'name': 'POLR2H-human', 'label': 'POLR2H', '@id': '/targets/POLR2H-human/', 'title': 'POLR2H (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '9b8befd9-1033-41dd-8fd9-eaeb89e1847c', 'status': 'released'} hg19 3 183960243 184172462 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF096LLU/, /files/ENCFF026HSI/ 3199406198 ENCODE Processing Pipeline 9f2f45db04bf7f74ad0ca893ddb10f25 https://www.encodeproject.org/files/ENCFF469YUW/@@download/ENCFF469YUW.bam released s3://encode-public/2016/05/21/617e0399-901b-49c8-b2a3-afdca7ae0e3a/ENCFF469YUW.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF299CFZ bam bam unfiltered alignments GRCh38 ENCSR776RXA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5437/'], '@type': ['Target', 'Item'], 'name': 'POLR2H-human', 'label': 'POLR2H', '@id': '/targets/POLR2H-human/', 'title': 'POLR2H (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '9b8befd9-1033-41dd-8fd9-eaeb89e1847c', 'status': 'released'} hg19 3 183960243 184172462 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF096LLU/, /files/ENCFF026HSI/ 4256921323 ENCODE Processing Pipeline cade54c7f9871db463fa6d8eff5dc9eb https://www.encodeproject.org/files/ENCFF299CFZ/@@download/ENCFF299CFZ.bam released s3://encode-public/2016/10/29/2b54fd57-fd40-4783-8129-a01cdd54e327/ENCFF299CFZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF448DJP bam bam alignments GRCh38 ENCSR776RXA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5437/'], '@type': ['Target', 'Item'], 'name': 'POLR2H-human', 'label': 'POLR2H', '@id': '/targets/POLR2H-human/', 'title': 'POLR2H (Homo sapiens)', 'investigated_as': ['RNA polymerase complex'], 'uuid': '9b8befd9-1033-41dd-8fd9-eaeb89e1847c', 'status': 'released'} hg19 3 183960243 184172462 DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF096LLU/, /files/ENCFF026HSI/ 3199043980 ENCODE Processing Pipeline f6c2d9ba3c2c690564f08ad5ebebeb9b https://www.encodeproject.org/files/ENCFF448DJP/@@download/ENCFF448DJP.bam released s3://encode-public/2016/10/29/79d8203b-c89f-4795-aedb-7e5ae81cf25a/ENCFF448DJP.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF603OFX bam bam unfiltered alignments GRCh38 ENCSR776RXA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5437/'], '@type': ['Target', 'Item'], 'name': 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/human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF841DOK/ 1845772996 Michael Snyder, Stanford b789374c1b40434797346bff24299a34 SRA:SRR6213035 https://www.encodeproject.org/files/ENCFF727RJU/@@download/ENCFF727RJU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/24/51c14d88-90c8-4bb3-941f-e7c15362106b/ENCFF727RJU.fastq.gz ENCFF841DOK fastq fastq reads ENCSR287HAL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF727RJU/ 2076845891 Michael Snyder, Stanford 21c0d9671cff5ea8286177df47073104 SRA:SRR6213035 https://www.encodeproject.org/files/ENCFF841DOK/@@download/ENCFF841DOK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/24/345162de-f65a-4d2c-a8b5-9c0f0e73f987/ENCFF841DOK.fastq.gz ENCFF390DNL bam bam unfiltered alignments hg19 ENCSR287HAL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF727RJU/, /files/ENCFF807MUK/, /files/ENCFF841DOK/ 3983708318 ENCODE Processing Pipeline e348c74d81d3ff0720b21140b670d231 https://www.encodeproject.org/files/ENCFF390DNL/@@download/ENCFF390DNL.bam released s3://encode-public/2016/10/27/fe521162-bc29-4c43-9c13-e35b442822d4/ENCFF390DNL.bam ENCODE3 hg19 archived ENCFF075IXF bam bam alignments hg19 ENCSR287HAL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF727RJU/, /files/ENCFF807MUK/, /files/ENCFF841DOK/ 3255180150 ENCODE Processing Pipeline 9c7cde152f8b2022cd50b1289357271a https://www.encodeproject.org/files/ENCFF075IXF/@@download/ENCFF075IXF.bam released s3://encode-public/2016/10/27/74440b8e-80ba-4ced-b529-82766fa85a98/ENCFF075IXF.bam ENCODE3 hg19 archived ENCFF299THU bam bam unfiltered alignments GRCh38 ENCSR287HAL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF727RJU/, /files/ENCFF643CGH/, /files/ENCFF841DOK/ 3993589663 ENCODE Processing Pipeline 62f4cdbb87c46be959c0a3b893a3a753 https://www.encodeproject.org/files/ENCFF299THU/@@download/ENCFF299THU.bam released s3://encode-public/2016/10/27/85e64f44-7f30-4c00-9a7a-211a9900d721/ENCFF299THU.bam ENCODE3 GRCh38 archived ENCFF416WIS bam bam alignments GRCh38 ENCSR287HAL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF727RJU/, /files/ENCFF643CGH/, /files/ENCFF841DOK/ 3260064593 ENCODE Processing Pipeline e682282fcec56d1075a7a7a94a3257dd https://www.encodeproject.org/files/ENCFF416WIS/@@download/ENCFF416WIS.bam released s3://encode-public/2016/10/27/bca1cc45-eef9-4d27-bf0e-b4a7d2cc41e5/ENCFF416WIS.bam ENCODE3 GRCh38 archived ENCFF335LZI bam bam unfiltered alignments GRCh38 ENCSR287HAL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF727RJU/, /files/ENCFF841DOK/ 4019068809 ENCODE Processing Pipeline 2a66eb862f85d28baae7503169a171e6 https://www.encodeproject.org/files/ENCFF335LZI/@@download/ENCFF335LZI.bam released s3://encode-public/2020/06/03/088076b1-f09f-4928-88e5-0c542ebf0ba0/ENCFF335LZI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF019DFA bam bam alignments GRCh38 ENCSR287HAL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF727RJU/, /files/ENCFF841DOK/ 3180637513 ENCODE Processing Pipeline 8e94504f5d97c82b1d2c1aac03b5e214 https://www.encodeproject.org/files/ENCFF019DFA/@@download/ENCFF019DFA.bam released s3://encode-public/2020/06/03/8612f50f-6ec9-4a2b-abce-c7be53d3693d/ENCFF019DFA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF269PHH fastq fastq reads ENCSR195UPC Control ChIP-seq /fly-donors/ENCDO328LZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 593787879 Kevin White, UChicago af7f97abd6f6227b3bf048356656daeb https://www.encodeproject.org/files/ENCFF269PHH/@@download/ENCFF269PHH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/10/03497e1a-8a4d-47bb-8918-e4cd0a3fc6df/ENCFF269PHH.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF090HKX fastq fastq reads ENCSR195UPC Control ChIP-seq /fly-donors/ENCDO328LZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 475644857 Kevin White, UChicago 392f47bd0075c73d5530272015ab0772 https://www.encodeproject.org/files/ENCFF090HKX/@@download/ENCFF090HKX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/10/3e089cdf-a29a-433b-a696-5a5c11ccb255/ENCFF090HKX.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF740OTL bam bam alignments dm3 ENCSR195UPC Control ChIP-seq /fly-donors/ENCDO328LZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': 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UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF090HKX/, /files/ENCFF269PHH/ 1257469092 Kevin White, UChicago 01acdd4303def61acab849947fc1b4e5 https://www.encodeproject.org/files/ENCFF627ATS/@@download/ENCFF627ATS.bam released s3://encode-public/2016/04/21/20415094-9a4a-47f3-b753-a2817d12efbe/ENCFF627ATS.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF864VUZ bigWig bigWig signal of unique reads dm3 ENCSR195UPC Control ChIP-seq /fly-donors/ENCDO328LZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF740OTL/ 15267075 Kevin White, UChicago 963527fdbe6de8f7b39ebdbd5a67106b https://www.encodeproject.org/files/ENCFF864VUZ/@@download/ENCFF864VUZ.bigWig released s3://encode-public/2016/07/01/6c71c79a-be81-4600-82b1-2bcbef47e26d/ENCFF864VUZ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF105SHW bigWig bigWig read-depth normalized signal dm6 ENCSR195UPC Control ChIP-seq /fly-donors/ENCDO328LZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF627ATS/ 17355752 Kevin White, UChicago b9379f3509f36ad3212fa31aeb59ab46 https://www.encodeproject.org/files/ENCFF105SHW/@@download/ENCFF105SHW.bigWig released s3://encode-public/2016/07/01/22f8fcbe-99e4-46e7-8bdc-c039cc989444/ENCFF105SHW.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF618DTF bigWig bigWig read-depth normalized signal dm3 ENCSR195UPC Control ChIP-seq /fly-donors/ENCDO328LZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF740OTL/ 15278004 Kevin White, UChicago cd1c53bad15a2407af1b9701ebf42749 https://www.encodeproject.org/files/ENCFF618DTF/@@download/ENCFF618DTF.bigWig released s3://encode-public/2016/07/01/cdc04e37-9522-4d18-b9d8-ec59b603e7a4/ENCFF618DTF.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF784PDK bigWig bigWig signal of unique reads dm6 ENCSR195UPC Control ChIP-seq /fly-donors/ENCDO328LZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41709/'], '@type': ['Target', 'Item'], 'name': 'foxo-dmelanogaster', 'label': 'foxo', '@id': '/targets/foxo-dmelanogaster/', 'title': 'foxo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7f0e1d45-3f72-4a86-98e2-8113881fb58c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF627ATS/ 17337180 Kevin White, UChicago 469185433935e1d088cc57dc2014ca4a https://www.encodeproject.org/files/ENCFF784PDK/@@download/ENCFF784PDK.bigWig released s3://encode-public/2016/07/01/2eb6db1c-f576-4965-a23c-001f8743502c/ENCFF784PDK.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF263LOB fastq fastq reads ENCSR349TJN Control ChIP-seq /fly-donors/ENCDO596VXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31988/'], '@type': ['Target', 'Item'], 'name': 'Hmr-dmelanogaster', 'label': 'Hmr', '@id': '/targets/Hmr-dmelanogaster/', 'title': 'Hmr (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93594964-7a6d-4515-b466-a5233eff87f7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1089442878 Kevin White, UChicago d854224a9a45aafdac279407ccae0337 https://www.encodeproject.org/files/ENCFF263LOB/@@download/ENCFF263LOB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/d18cdc53-b8b6-42f0-86e0-ded16d247e48/ENCFF263LOB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF713ZRN bam bam alignments dm3 ENCSR349TJN Control ChIP-seq /fly-donors/ENCDO596VXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31988/'], '@type': ['Target', 'Item'], 'name': 'Hmr-dmelanogaster', 'label': 'Hmr', '@id': '/targets/Hmr-dmelanogaster/', 'title': 'Hmr (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93594964-7a6d-4515-b466-a5233eff87f7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF263LOB/ 1466843772 Kevin White, UChicago 670c22c17ab3626407145f499fce1729 https://www.encodeproject.org/files/ENCFF713ZRN/@@download/ENCFF713ZRN.bam released s3://encode-public/2017/09/12/b6a06a3a-835f-4262-afa2-45d353f791e8/ENCFF713ZRN.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF449UAL bam bam alignments dm6 ENCSR349TJN Control ChIP-seq /fly-donors/ENCDO596VXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31988/'], '@type': ['Target', 'Item'], 'name': 'Hmr-dmelanogaster', 'label': 'Hmr', '@id': '/targets/Hmr-dmelanogaster/', 'title': 'Hmr (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93594964-7a6d-4515-b466-a5233eff87f7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF263LOB/ 1453967787 Kevin White, UChicago a88196ab5dd656d8edd1caadaf5cf902 https://www.encodeproject.org/files/ENCFF449UAL/@@download/ENCFF449UAL.bam released s3://encode-public/2017/09/13/fc470542-fbdb-48e0-be04-f888ebb0d1d6/ENCFF449UAL.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF350DGU bigWig bigWig signal of unique reads dm3 ENCSR349TJN Control ChIP-seq /fly-donors/ENCDO596VXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31988/'], '@type': ['Target', 'Item'], 'name': 'Hmr-dmelanogaster', 'label': 'Hmr', '@id': '/targets/Hmr-dmelanogaster/', 'title': 'Hmr (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93594964-7a6d-4515-b466-a5233eff87f7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF713ZRN/ 15483125 Kevin White, UChicago 0792800873abd3578081910acd2046d3 https://www.encodeproject.org/files/ENCFF350DGU/@@download/ENCFF350DGU.bigWig released s3://encode-public/2017/09/13/9c6191fe-ff9c-4224-9861-e89b308e5032/ENCFF350DGU.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF473ITD bigWig bigWig read-depth normalized signal dm3 ENCSR349TJN Control ChIP-seq /fly-donors/ENCDO596VXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31988/'], '@type': ['Target', 'Item'], 'name': 'Hmr-dmelanogaster', 'label': 'Hmr', '@id': '/targets/Hmr-dmelanogaster/', 'title': 'Hmr (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93594964-7a6d-4515-b466-a5233eff87f7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF713ZRN/ 15481641 Kevin White, UChicago c522dbf1bcdd9f37bcf570abafa36696 https://www.encodeproject.org/files/ENCFF473ITD/@@download/ENCFF473ITD.bigWig released s3://encode-public/2017/09/13/960dce4a-dc08-4da1-b1be-594fe4203335/ENCFF473ITD.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF483TAI bigWig bigWig read-depth normalized signal dm6 ENCSR349TJN Control ChIP-seq /fly-donors/ENCDO596VXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31988/'], '@type': ['Target', 'Item'], 'name': 'Hmr-dmelanogaster', 'label': 'Hmr', '@id': '/targets/Hmr-dmelanogaster/', 'title': 'Hmr (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93594964-7a6d-4515-b466-a5233eff87f7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF449UAL/ 17709835 Kevin White, UChicago 06f62123177b8cbf1d944d458f882c96 https://www.encodeproject.org/files/ENCFF483TAI/@@download/ENCFF483TAI.bigWig released s3://encode-public/2017/09/14/ec984a78-ef10-41fa-83e9-91f5fc730d80/ENCFF483TAI.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF457ZOQ bigWig bigWig signal of unique reads dm6 ENCSR349TJN Control ChIP-seq /fly-donors/ENCDO596VXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31988/'], '@type': ['Target', 'Item'], 'name': 'Hmr-dmelanogaster', 'label': 'Hmr', '@id': '/targets/Hmr-dmelanogaster/', 'title': 'Hmr (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93594964-7a6d-4515-b466-a5233eff87f7', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF449UAL/ 17706489 Kevin White, UChicago 0ce694a59cc90275a8e95cb2cb7545da https://www.encodeproject.org/files/ENCFF457ZOQ/@@download/ENCFF457ZOQ.bigWig released s3://encode-public/2017/09/14/42e9cc84-ad46-4787-9fa3-ba978e8ecda8/ENCFF457ZOQ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF477LDK fastq fastq reads ENCSR213QMS Control ChIP-seq /fly-donors/ENCDO374AQN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40287/'], '@type': ['Target', 'Item'], 'name': 'kni-dmelanogaster', 'label': 'kni', '@id': '/targets/kni-dmelanogaster/', 'title': 'kni (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9501832a-a6e1-4017-80c2-c545d076e0f6', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 662456275 Kevin White, UChicago 26fd9683289155ec4b2f62894808f1ba https://www.encodeproject.org/files/ENCFF477LDK/@@download/ENCFF477LDK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/732737ad-2ff8-4e11-9043-7eccdfe753c5/ENCFF477LDK.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF985ZOO bam bam alignments dm3 ENCSR213QMS Control ChIP-seq /fly-donors/ENCDO374AQN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40287/'], '@type': ['Target', 'Item'], 'name': 'kni-dmelanogaster', 'label': 'kni', '@id': '/targets/kni-dmelanogaster/', 'title': 'kni (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9501832a-a6e1-4017-80c2-c545d076e0f6', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF477LDK/ 886822980 Kevin White, UChicago 84b1ea6107e392216661dd6e879bba4b https://www.encodeproject.org/files/ENCFF985ZOO/@@download/ENCFF985ZOO.bam released s3://encode-public/2017/09/12/14f5ecc0-8a74-4aa5-9d26-096425292416/ENCFF985ZOO.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF303QTV bam bam alignments dm6 ENCSR213QMS Control ChIP-seq /fly-donors/ENCDO374AQN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40287/'], '@type': ['Target', 'Item'], 'name': 'kni-dmelanogaster', 'label': 'kni', '@id': '/targets/kni-dmelanogaster/', 'title': 'kni (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9501832a-a6e1-4017-80c2-c545d076e0f6', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF477LDK/ 878687462 Kevin White, UChicago 3d3115095b2067befe229e9f0f7b681d https://www.encodeproject.org/files/ENCFF303QTV/@@download/ENCFF303QTV.bam released s3://encode-public/2017/09/13/2c5dd93c-164b-48c0-b69f-3668520335ed/ENCFF303QTV.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF576JEB bigWig bigWig signal of unique reads dm3 ENCSR213QMS Control ChIP-seq /fly-donors/ENCDO374AQN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40287/'], '@type': ['Target', 'Item'], 'name': 'kni-dmelanogaster', 'label': 'kni', '@id': '/targets/kni-dmelanogaster/', 'title': 'kni (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9501832a-a6e1-4017-80c2-c545d076e0f6', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF985ZOO/ 15320010 Kevin White, UChicago ddf1aabadc2174a0a0557f290e21dac7 https://www.encodeproject.org/files/ENCFF576JEB/@@download/ENCFF576JEB.bigWig released s3://encode-public/2017/09/13/e4485682-2c4e-47ed-83cf-93ae34cc6777/ENCFF576JEB.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF913NYM bigWig bigWig read-depth normalized signal dm3 ENCSR213QMS Control ChIP-seq /fly-donors/ENCDO374AQN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40287/'], '@type': ['Target', 'Item'], 'name': 'kni-dmelanogaster', 'label': 'kni', '@id': '/targets/kni-dmelanogaster/', 'title': 'kni (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9501832a-a6e1-4017-80c2-c545d076e0f6', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF985ZOO/ 15324117 Kevin White, UChicago f8efc0c1f9335e8b9a7a65f5deb46835 https://www.encodeproject.org/files/ENCFF913NYM/@@download/ENCFF913NYM.bigWig released s3://encode-public/2017/09/13/9ab8576e-07d2-4c73-b3e4-2e6a0ecd8be5/ENCFF913NYM.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF487HMG bigWig bigWig read-depth normalized signal dm6 ENCSR213QMS Control ChIP-seq /fly-donors/ENCDO374AQN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40287/'], '@type': ['Target', 'Item'], 'name': 'kni-dmelanogaster', 'label': 'kni', '@id': '/targets/kni-dmelanogaster/', 'title': 'kni (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9501832a-a6e1-4017-80c2-c545d076e0f6', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF303QTV/ 17534383 Kevin White, UChicago ce926629fff40d7590b5512a9c2ae1e4 https://www.encodeproject.org/files/ENCFF487HMG/@@download/ENCFF487HMG.bigWig released s3://encode-public/2017/09/14/ef9ad6e4-a154-40ea-9b0f-55cdc58e7d46/ENCFF487HMG.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF781FNY bigWig bigWig signal of unique reads dm6 ENCSR213QMS Control ChIP-seq /fly-donors/ENCDO374AQN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40287/'], '@type': ['Target', 'Item'], 'name': 'kni-dmelanogaster', 'label': 'kni', '@id': '/targets/kni-dmelanogaster/', 'title': 'kni (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9501832a-a6e1-4017-80c2-c545d076e0f6', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF303QTV/ 17525856 Kevin White, UChicago b23e6ea4b5ed9a6e50955203e24ba67f https://www.encodeproject.org/files/ENCFF781FNY/@@download/ENCFF781FNY.bigWig released s3://encode-public/2017/09/14/68bd9013-2af8-41d8-85ab-8408e67c15e4/ENCFF781FNY.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF759XCU bam bam unfiltered alignments hg19 ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF726JBF/, /files/ENCFF807MUK/, /files/ENCFF348XCG/ 2552026926 ENCODE Processing Pipeline bea2083d976c0ae895acf25ac2a60815 https://www.encodeproject.org/files/ENCFF759XCU/@@download/ENCFF759XCU.bam released s3://encode-public/2018/02/22/92bfd85e-a0b4-4312-97c5-c0281951c64a/ENCFF759XCU.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF726JBF fastq fastq reads ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 728373788 Kevin White, UChicago 133f27e39bd1e95a1a69122897205eae SRA:SRR6214021 https://www.encodeproject.org/files/ENCFF726JBF/@@download/ENCFF726JBF.fastq.gz Illumina HiSeq 2000 /files/ENCFF348XCG/ released s3://encode-public/2016/03/14/f86c8e25-750d-4f13-865f-5ea1f2a72996/ENCFF726JBF.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF348XCG fastq fastq reads ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1675617799 Kevin White, UChicago d354ded1bfb3167f4078f6e571ce1d90 SRA:SRR6214022 https://www.encodeproject.org/files/ENCFF348XCG/@@download/ENCFF348XCG.fastq.gz Illumina HiSeq 2500 /files/ENCFF726JBF/ released s3://encode-public/2016/03/26/6989536b-103b-440c-a0c6-d509bd7deaf7/ENCFF348XCG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF075EEP bam bam alignments hg19 ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF726JBF/, /files/ENCFF807MUK/, /files/ENCFF348XCG/ 1994992742 ENCODE Processing Pipeline 892b898ef430a6682ebd2292e1b86e40 https://www.encodeproject.org/files/ENCFF075EEP/@@download/ENCFF075EEP.bam released s3://encode-public/2016/04/23/bcf52e47-068e-461a-9722-de4005e31798/ENCFF075EEP.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF271VSQ bam bam unfiltered alignments GRCh38 ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF726JBF/, /files/ENCFF643CGH/, /files/ENCFF348XCG/ 2560107232 ENCODE Processing Pipeline 244611ae14bb387b0cb1c7dbb96f406a https://www.encodeproject.org/files/ENCFF271VSQ/@@download/ENCFF271VSQ.bam released s3://encode-public/2016/05/06/01522164-e994-466f-a411-7ac64f4c0a07/ENCFF271VSQ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF037PYE bam bam alignments GRCh38 ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF726JBF/, /files/ENCFF643CGH/, /files/ENCFF348XCG/ 1994235902 ENCODE Processing Pipeline 7f3fb8ffae397437b83c297641f84da9 https://www.encodeproject.org/files/ENCFF037PYE/@@download/ENCFF037PYE.bam released s3://encode-public/2016/05/06/24637740-0280-47b1-a2dc-ba7d7ab25153/ENCFF037PYE.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF226IEE bam bam unfiltered alignments GRCh38 ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF726JBF/, /files/ENCFF348XCG/, /files/ENCFF110MCL/ 2561088626 ENCODE Processing Pipeline ca31f812a359d7382545dd4fb5ff6629 https://www.encodeproject.org/files/ENCFF226IEE/@@download/ENCFF226IEE.bam released s3://encode-public/2020/10/27/a76a25dd-4e48-427e-af7b-8515b20fdb6c/ENCFF226IEE.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF499KZB bam bam alignments GRCh38 ENCSR825KUF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF726JBF/, /files/ENCFF348XCG/, /files/ENCFF110MCL/ 2106791892 ENCODE Processing Pipeline 124b75fb1141a740c274b90c6e11c940 https://www.encodeproject.org/files/ENCFF499KZB/@@download/ENCFF499KZB.bam released s3://encode-public/2020/10/27/10b98b20-a109-4bf4-a6d7-6d753d08eb42/ENCFF499KZB.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF451LWT bam bam unfiltered alignments GRCh38 ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF160VFX/, /files/ENCFF643CGH/, /files/ENCFF439KJM/ 4793062442 ENCODE Processing Pipeline ec97e3e82270e37a97a13fe00a126b75 https://www.encodeproject.org/files/ENCFF451LWT/@@download/ENCFF451LWT.bam released s3://encode-public/2018/02/22/c7c15618-aeb7-40d7-9fec-9b2f32f5086b/ENCFF451LWT.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF439KJM fastq fastq reads ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF160VFX/ 2204195693 Michael Snyder, Stanford 6f2028a48546000c4d90e9e2f304bd48 SRA:SRR5111500 https://www.encodeproject.org/files/ENCFF439KJM/@@download/ENCFF439KJM.fastq.gz Illumina HiSeq 2000 /files/ENCFF650GDL/, /files/ENCFF132ASO/ released s3://encode-public/2016/04/07/3dd45a25-74f3-47ee-8794-35acc44776d6/ENCFF439KJM.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF160VFX fastq fastq reads ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF439KJM/ 2190566643 Michael Snyder, Stanford d59aef451884d2cb15e4ec3c8b39559b SRA:SRR5111500 https://www.encodeproject.org/files/ENCFF160VFX/@@download/ENCFF160VFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF650GDL/, /files/ENCFF132ASO/ released s3://encode-public/2016/04/07/73961f85-98b8-490f-9620-dc61db8af18b/ENCFF160VFX.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF563IAT bam bam alignments hg19 ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF160VFX/, /files/ENCFF807MUK/, /files/ENCFF439KJM/ 3911611250 ENCODE Processing Pipeline 13c77f33505ef58e3617cd1fd530f3b1 https://www.encodeproject.org/files/ENCFF563IAT/@@download/ENCFF563IAT.bam released s3://encode-public/2016/05/21/83bb0c8f-7918-45a9-a21a-de0fd6cb34f0/ENCFF563IAT.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF625EIY bam bam unfiltered alignments hg19 ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF160VFX/, /files/ENCFF807MUK/, /files/ENCFF439KJM/ 4785777764 ENCODE Processing Pipeline df5e02fe3f498d9c1622700b91380504 https://www.encodeproject.org/files/ENCFF625EIY/@@download/ENCFF625EIY.bam released s3://encode-public/2016/08/23/7c4895b9-e934-43ea-8491-f89e9710bef3/ENCFF625EIY.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF886VAQ bam bam alignments GRCh38 ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF160VFX/, /files/ENCFF643CGH/, /files/ENCFF439KJM/ 3913900508 ENCODE Processing Pipeline de17760f5f2b88fe45b3e743f5dc3c68 https://www.encodeproject.org/files/ENCFF886VAQ/@@download/ENCFF886VAQ.bam released s3://encode-public/2016/10/24/98b40854-c63f-4478-a7b6-964b844c4e0f/ENCFF886VAQ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF253VZM bam bam alignments GRCh38 ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF160VFX/, /files/ENCFF439KJM/ 3809345602 ENCODE Processing Pipeline b90f02a75fe160b4b9a4edce4388d598 https://www.encodeproject.org/files/ENCFF253VZM/@@download/ENCFF253VZM.bam released s3://encode-public/2020/06/03/4b79f077-1970-4444-8080-c6958036d340/ENCFF253VZM.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF219GNJ bam bam unfiltered alignments GRCh38 ENCSR375CYS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:NFE2'], 'aliases': ['michael-snyder:TS-235'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4778/'], '@type': ['Target', 'Item'], 'label': 'NFE2', 'title': 'NFE2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59ac958a-55a3-40f7-9223-a51c11ebe176', 'schema_version': '14', 'name': 'NFE2-human', '@id': '/targets/NFE2-human/', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF160VFX/, /files/ENCFF439KJM/ 4777068629 ENCODE Processing Pipeline 9599245856afd984a598ae9d0e2515a1 https://www.encodeproject.org/files/ENCFF219GNJ/@@download/ENCFF219GNJ.bam released s3://encode-public/2020/06/03/42790c1d-7bce-4b78-b073-7222434fdb64/ENCFF219GNJ.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF502XNL fastq fastq reads ENCSR898AGW Control ChIP-seq /fly-donors/ENCDO958FEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43900/'], '@type': ['Target', 'Item'], 'name': 'Crg-1-dmelanogaster', 'label': 'Crg-1', '@id': '/targets/Crg-1-dmelanogaster/', 'title': 'Crg-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '663d39e0-7022-44be-8875-b53b2d3d09a6', 'status': 'released'} dm3 X 3682036 3702049 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 587091159 Kevin White, UChicago d5fc1165476e978490e52496e59f3c96 https://www.encodeproject.org/files/ENCFF502XNL/@@download/ENCFF502XNL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/302ed520-a079-49c2-b8e5-0c2f6f3565c3/ENCFF502XNL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF438GZY bam bam alignments dm3 ENCSR898AGW Control ChIP-seq /fly-donors/ENCDO958FEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43900/'], '@type': ['Target', 'Item'], 'name': 'Crg-1-dmelanogaster', 'label': 'Crg-1', '@id': '/targets/Crg-1-dmelanogaster/', 'title': 'Crg-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '663d39e0-7022-44be-8875-b53b2d3d09a6', 'status': 'released'} dm3 X 3682036 3702049 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF502XNL/ 666371341 Kevin White, UChicago 1fc9ec1107fb25efdcc351829970df38 https://www.encodeproject.org/files/ENCFF438GZY/@@download/ENCFF438GZY.bam released s3://encode-public/2016/04/10/3fe05cc6-930f-403e-a3a3-656ba5aa3911/ENCFF438GZY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF479GHY bigWig bigWig signal of unique reads dm3 ENCSR898AGW Control ChIP-seq /fly-donors/ENCDO958FEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43900/'], '@type': ['Target', 'Item'], 'name': 'Crg-1-dmelanogaster', 'label': 'Crg-1', '@id': '/targets/Crg-1-dmelanogaster/', 'title': 'Crg-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '663d39e0-7022-44be-8875-b53b2d3d09a6', 'status': 'released'} dm3 X 3682036 3702049 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF438GZY/ 15041353 Kevin White, UChicago c81ec6ca16d4f4a638237172c8db8985 https://www.encodeproject.org/files/ENCFF479GHY/@@download/ENCFF479GHY.bigWig released s3://encode-public/2016/04/11/233c3dd4-4fcb-4f13-b950-187d83fba3c2/ENCFF479GHY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF123BGB bigWig bigWig read-depth normalized signal dm3 ENCSR898AGW Control ChIP-seq /fly-donors/ENCDO958FEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43900/'], '@type': ['Target', 'Item'], 'name': 'Crg-1-dmelanogaster', 'label': 'Crg-1', '@id': '/targets/Crg-1-dmelanogaster/', 'title': 'Crg-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '663d39e0-7022-44be-8875-b53b2d3d09a6', 'status': 'released'} dm3 X 3682036 3702049 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF438GZY/ 15037109 Kevin White, UChicago 8c91d1b40f15101ea03da119f5637e3e https://www.encodeproject.org/files/ENCFF123BGB/@@download/ENCFF123BGB.bigWig released s3://encode-public/2016/04/11/3e9f30ea-13d6-4750-92c9-8b94606bb7d9/ENCFF123BGB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF760SPS bam bam alignments dm6 ENCSR898AGW Control ChIP-seq /fly-donors/ENCDO958FEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43900/'], '@type': ['Target', 'Item'], 'name': 'Crg-1-dmelanogaster', 'label': 'Crg-1', '@id': '/targets/Crg-1-dmelanogaster/', 'title': 'Crg-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '663d39e0-7022-44be-8875-b53b2d3d09a6', 'status': 'released'} dm3 X 3682036 3702049 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF502XNL/ 657218419 Kevin White, UChicago 86f8187b23a46b9fd0ae39bf813d172f https://www.encodeproject.org/files/ENCFF760SPS/@@download/ENCFF760SPS.bam released s3://encode-public/2016/04/21/29fa0ea0-53f3-4b80-a0ce-629b1bc945f2/ENCFF760SPS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF824JUX bigWig bigWig read-depth normalized signal dm6 ENCSR898AGW Control ChIP-seq /fly-donors/ENCDO958FEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43900/'], '@type': ['Target', 'Item'], 'name': 'Crg-1-dmelanogaster', 'label': 'Crg-1', '@id': '/targets/Crg-1-dmelanogaster/', 'title': 'Crg-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '663d39e0-7022-44be-8875-b53b2d3d09a6', 'status': 'released'} dm3 X 3682036 3702049 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF760SPS/ 17071483 Kevin White, UChicago 3e0b7df7101dc6a2d7f81f09d56ed670 https://www.encodeproject.org/files/ENCFF824JUX/@@download/ENCFF824JUX.bigWig released s3://encode-public/2016/06/20/b3ea76f6-eaed-4eb1-a37a-2d49b37b422a/ENCFF824JUX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF002WXD bigWig bigWig signal of unique reads dm6 ENCSR898AGW Control ChIP-seq /fly-donors/ENCDO958FEH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43900/'], '@type': ['Target', 'Item'], 'name': 'Crg-1-dmelanogaster', 'label': 'Crg-1', '@id': '/targets/Crg-1-dmelanogaster/', 'title': 'Crg-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '663d39e0-7022-44be-8875-b53b2d3d09a6', 'status': 'released'} dm3 X 3682036 3702049 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF760SPS/ 17080614 Kevin White, UChicago ad6c8b6344a6747bb4c1cb4d56deeef4 https://www.encodeproject.org/files/ENCFF002WXD/@@download/ENCFF002WXD.bigWig released s3://encode-public/2016/06/20/88c57393-2317-4bb8-a2de-5baa7afba727/ENCFF002WXD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF548BRW fastq fastq reads ENCSR497AYX Control ChIP-seq /fly-donors/ENCDO830TCM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36373/'], '@type': ['Target', 'Item'], 'name': 'achi-dmelanogaster', 'label': 'achi', '@id': '/targets/achi-dmelanogaster/', 'title': 'achi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d36bc3a-0081-4d95-8194-9a351be50b82', 'status': 'released'} dm3 2R 8397902 8417975 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 461913800 Kevin White, UChicago 7e6e0687662d5ddea4a1985506fed52f https://www.encodeproject.org/files/ENCFF548BRW/@@download/ENCFF548BRW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/09/bc114de3-5d72-44b5-a21b-d8ff57abe621/ENCFF548BRW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF068WNU bam bam alignments dm3 ENCSR497AYX Control ChIP-seq /fly-donors/ENCDO830TCM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36373/'], '@type': ['Target', 'Item'], 'name': 'achi-dmelanogaster', 'label': 'achi', '@id': '/targets/achi-dmelanogaster/', 'title': 'achi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d36bc3a-0081-4d95-8194-9a351be50b82', 'status': 'released'} dm3 2R 8397902 8417975 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF548BRW/ 547977163 Kevin White, UChicago 85698be09b18ab746d8359c49af3e3a8 https://www.encodeproject.org/files/ENCFF068WNU/@@download/ENCFF068WNU.bam released s3://encode-public/2016/04/11/5aa949df-5edf-4004-b5f7-b3a60ce73707/ENCFF068WNU.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF638DIZ bigWig bigWig read-depth normalized signal dm3 ENCSR497AYX Control ChIP-seq /fly-donors/ENCDO830TCM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36373/'], '@type': ['Target', 'Item'], 'name': 'achi-dmelanogaster', 'label': 'achi', '@id': '/targets/achi-dmelanogaster/', 'title': 'achi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d36bc3a-0081-4d95-8194-9a351be50b82', 'status': 'released'} dm3 2R 8397902 8417975 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF068WNU/ 15068081 Kevin White, UChicago 2e465678bfcfbc25fa2540ce91466ad6 https://www.encodeproject.org/files/ENCFF638DIZ/@@download/ENCFF638DIZ.bigWig released s3://encode-public/2016/04/11/d6f3417f-4946-4237-8a0d-1e5e61010cbc/ENCFF638DIZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF942WIZ bigWig bigWig signal of unique reads dm3 ENCSR497AYX Control ChIP-seq /fly-donors/ENCDO830TCM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36373/'], '@type': ['Target', 'Item'], 'name': 'achi-dmelanogaster', 'label': 'achi', '@id': '/targets/achi-dmelanogaster/', 'title': 'achi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d36bc3a-0081-4d95-8194-9a351be50b82', 'status': 'released'} dm3 2R 8397902 8417975 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF068WNU/ 15077905 Kevin White, UChicago 186f70af0b60664a87861699ad6cf2c5 https://www.encodeproject.org/files/ENCFF942WIZ/@@download/ENCFF942WIZ.bigWig released s3://encode-public/2016/04/11/4c5aa9e1-3a59-4a75-9245-134e02e69a7e/ENCFF942WIZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF804VRY bam bam alignments dm6 ENCSR497AYX Control ChIP-seq /fly-donors/ENCDO830TCM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36373/'], '@type': ['Target', 'Item'], 'name': 'achi-dmelanogaster', 'label': 'achi', '@id': '/targets/achi-dmelanogaster/', 'title': 'achi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d36bc3a-0081-4d95-8194-9a351be50b82', 'status': 'released'} dm3 2R 8397902 8417975 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF548BRW/ 545136000 Kevin White, UChicago 05d6e434d34f80a6affedcb612c57614 https://www.encodeproject.org/files/ENCFF804VRY/@@download/ENCFF804VRY.bam released s3://encode-public/2016/04/20/6ed74cb2-fde6-4cd3-8777-802f611d37b8/ENCFF804VRY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF013GTI bigWig bigWig signal of unique reads dm6 ENCSR497AYX Control ChIP-seq /fly-donors/ENCDO830TCM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36373/'], '@type': ['Target', 'Item'], 'name': 'achi-dmelanogaster', 'label': 'achi', '@id': '/targets/achi-dmelanogaster/', 'title': 'achi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d36bc3a-0081-4d95-8194-9a351be50b82', 'status': 'released'} dm3 2R 8397902 8417975 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF804VRY/ 17165401 Kevin White, UChicago ec3ef2e18ecda94661f7f644d96dcfa5 https://www.encodeproject.org/files/ENCFF013GTI/@@download/ENCFF013GTI.bigWig released s3://encode-public/2016/06/20/e2b30fbd-8c1f-4f63-a12e-24024ba1cf04/ENCFF013GTI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF136HGB bigWig bigWig read-depth normalized signal dm6 ENCSR497AYX Control ChIP-seq /fly-donors/ENCDO830TCM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36373/'], '@type': ['Target', 'Item'], 'name': 'achi-dmelanogaster', 'label': 'achi', '@id': '/targets/achi-dmelanogaster/', 'title': 'achi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3d36bc3a-0081-4d95-8194-9a351be50b82', 'status': 'released'} dm3 2R 8397902 8417975 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF804VRY/ 17143402 Kevin White, UChicago a90f931199e727a79b11c2713864594b https://www.encodeproject.org/files/ENCFF136HGB/@@download/ENCFF136HGB.bigWig released s3://encode-public/2016/06/20/7a98fa03-6f0d-4208-9c13-cd5e0ed3883d/ENCFF136HGB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF557BAE fastq fastq reads ENCSR991FSR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1764608665 Bing Ren, UCSD ff496a6ffe99195964da92bb2a149336 SRA:SRR3653410 https://www.encodeproject.org/files/ENCFF557BAE/@@download/ENCFF557BAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/35aec7eb-52c5-44f7-bab4-de1fffc7c5de/ENCFF557BAE.fastq.gz ENCFF125ETQ fastq fastq reads ENCSR991FSR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_3 50 single-ended 90139183 Bing Ren, UCSD 445866b63eca7b31b9736e5a3e50f0cd SRA:SRR3653412 https://www.encodeproject.org/files/ENCFF125ETQ/@@download/ENCFF125ETQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/a3311527-cf1e-441d-ae71-33602fad48ee/ENCFF125ETQ.fastq.gz ENCFF066LAE fastq fastq reads ENCSR991FSR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 507014976 Bing Ren, UCSD 72b5ffaa43e176ea2dff21eecf10b83c SRA:SRR3653411 https://www.encodeproject.org/files/ENCFF066LAE/@@download/ENCFF066LAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/017a1e67-665c-4987-964e-3b6c6c3d9d89/ENCFF066LAE.fastq.gz ENCFF078PNM fastq fastq reads ENCSR991FSR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1522292663 Bing Ren, UCSD a71ddb3c5ec5a73da8657493d1a27d6c SRA:SRR3653413 https://www.encodeproject.org/files/ENCFF078PNM/@@download/ENCFF078PNM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/d0c6b9c9-f44b-4d1a-ae4f-6acba0c1c085/ENCFF078PNM.fastq.gz ENCFF202WAI fastq fastq reads ENCSR991FSR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 420806799 Bing Ren, UCSD 3d7330fae0d0d1d8b5eb4b55b04cb236 SRA:SRR3653414 https://www.encodeproject.org/files/ENCFF202WAI/@@download/ENCFF202WAI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/bfe94118-e3c0-45b9-b58e-7ea5842fec0f/ENCFF202WAI.fastq.gz ENCFF405EMM bam bam alignments mm10-minimal ENCSR991FSR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF066LAE/, /files/ENCFF557BAE/, 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/mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF018NEO/, /files/ENCFF066LAE/, /files/ENCFF557BAE/ 2252996974 ENCODE Processing Pipeline c1f910d70f9566b73025d6255ff61306 https://www.encodeproject.org/files/ENCFF614XRG/@@download/ENCFF614XRG.bam released s3://encode-public/2016/05/20/35cf7030-9ec6-4cf7-a7ea-700da38600b7/ENCFF614XRG.bam ENCODE3 mm10 archived ENCFF970FNZ bam bam alignments mm10 ENCSR991FSR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2, 1_3 51 /files/ENCFF018NEO/, /files/ENCFF202WAI/, /files/ENCFF078PNM/, /files/ENCFF125ETQ/ 2038395489 ENCODE Processing Pipeline 9ba0108e151ce1018db6f17e27085988 https://www.encodeproject.org/files/ENCFF970FNZ/@@download/ENCFF970FNZ.bam released s3://encode-public/2016/05/20/8ed6bc25-acf6-4517-b42c-5ff997e55f9f/ENCFF970FNZ.bam 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/files/ENCFF066LAE/, /files/ENCFF557BAE/ 2271827163 ENCODE Processing Pipeline 7340742924466f67fd99c1be1eb0a8ba https://www.encodeproject.org/files/ENCFF253QVH/@@download/ENCFF253QVH.bam released s3://encode-public/2020/10/07/2179cf13-e9b2-4395-99cd-4be708e54871/ENCFF253QVH.bam ENCODE4 v1.5.1 mm10 released ENCFF048TBH fastq fastq reads ENCSR791YKI Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA modENCODE >200 1 1_1 44 single-ended 690551825 Kevin White, UChicago 23921b0cf2dfeb7663c24cb774bf0bf2 https://www.encodeproject.org/files/ENCFF048TBH/@@download/ENCFF048TBH.fastq.gz Illumina HiSeq 2000 /files/ENCFF032GZG/ archived s3://encode-public/2016/09/01/444adfb0-7219-4a07-a2e7-873c1d314c68/ENCFF048TBH.fastq.gz lacking processed data ENCFF307LWZ fastq fastq reads ENCSR526EXI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_2 76 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/files/ENCFF228LJG/, /files/ENCFF980IWS/ 7925088517 ENCODE Processing Pipeline 9ce1abecfca6e1bfff2b77588c5a7395 https://www.encodeproject.org/files/ENCFF520BVL/@@download/ENCFF520BVL.bam released s3://encode-public/2016/10/28/ca70eaf7-ac70-4ab1-acb9-d15e188ef0cd/ENCFF520BVL.bam ENCODE3 GRCh38 archived ENCFF305OFX bam bam alignments hg19 ENCSR526EXI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF307LWZ/, /files/ENCFF807MUK/, /files/ENCFF993UPA/, /files/ENCFF228LJG/, /files/ENCFF980IWS/ 6513216832 ENCODE Processing Pipeline c7870ab17e4606c3f1e3b463bf79dfc6 https://www.encodeproject.org/files/ENCFF305OFX/@@download/ENCFF305OFX.bam released s3://encode-public/2016/10/28/8863230c-efc7-4168-8241-6d389a097e05/ENCFF305OFX.bam ENCODE3 hg19 archived ENCFF137YSL bam bam unfiltered alignments hg19 ENCSR526EXI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle 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bam bam alignments GRCh38 ENCSR526EXI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF307LWZ/, /files/ENCFF993UPA/, /files/ENCFF110MCL/, /files/ENCFF228LJG/, /files/ENCFF980IWS/ 6679370712 ENCODE Processing Pipeline a6e86f5b48e3116e0ed816e92732b6be https://www.encodeproject.org/files/ENCFF730PAF/@@download/ENCFF730PAF.bam released s3://encode-public/2020/08/20/33407c81-ba6d-4cdd-a5d1-99a1d24d133a/ENCFF730PAF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF652SKD bam bam unfiltered alignments GRCh38 ENCSR526EXI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF307LWZ/, /files/ENCFF993UPA/, /files/ENCFF110MCL/, /files/ENCFF228LJG/, /files/ENCFF980IWS/ 8044514314 ENCODE Processing Pipeline b9a084f04813c8f41fa02f4a9fca9184 https://www.encodeproject.org/files/ENCFF652SKD/@@download/ENCFF652SKD.bam released s3://encode-public/2020/08/20/04526e54-8193-45ff-b1ce-efc9c62f4706/ENCFF652SKD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF382CUZ fastq fastq reads ENCSR396VOB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 single-ended 959613755 Kevin White, UChicago 1b7300a02e3767629cf82da0b20b4e7e https://www.encodeproject.org/files/ENCFF382CUZ/@@download/ENCFF382CUZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/16/875998da-85be-4eca-aada-fd0d5350a8a9/ENCFF382CUZ.fastq.gz ENCFF003ABI bam bam alignments dm3 ENCSR396VOB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF382CUZ/ 1196326148 Kevin White, UChicago b34092e86d80beef12f5fe70016b3dc4 https://www.encodeproject.org/files/ENCFF003ABI/@@download/ENCFF003ABI.bam released s3://encode-public/2017/06/20/b91c576a-aa83-4b8a-85a7-5539ee417bda/ENCFF003ABI.bam Lab custom dm3 archived ENCFF041PWK bam bam alignments dm6 ENCSR396VOB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF382CUZ/ 1188540107 Kevin White, UChicago 6859e1aa1f9f93068d88f865af53556d https://www.encodeproject.org/files/ENCFF041PWK/@@download/ENCFF041PWK.bam released s3://encode-public/2017/06/28/dd71cfbc-ef1f-411f-8809-d2e220dd7660/ENCFF041PWK.bam Lab custom dm6 released ENCFF296DRO bigWig bigWig signal of unique reads dm3 ENCSR396VOB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF003ABI/ 15241767 Kevin White, UChicago 4ebdec058be509441228a5670dbe0541 https://www.encodeproject.org/files/ENCFF296DRO/@@download/ENCFF296DRO.bigWig released s3://encode-public/2017/06/29/bb069a0e-cb44-4c66-be0c-fcfaa1933260/ENCFF296DRO.bigWig Lab custom dm3 archived ENCFF035OVV bigWig bigWig read-depth normalized signal dm3 ENCSR396VOB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF003ABI/ 15240420 Kevin White, UChicago d783c5fae764485a4ec38b88f6d5bb5f https://www.encodeproject.org/files/ENCFF035OVV/@@download/ENCFF035OVV.bigWig released s3://encode-public/2017/06/29/c038441a-813b-46c2-bb8e-1454972a2b41/ENCFF035OVV.bigWig Lab custom dm3 archived ENCFF988JAV bigWig bigWig read-depth normalized signal dm6 ENCSR396VOB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF041PWK/ 17402284 Kevin White, UChicago 5637ea482a0fcf9a6fd103bd780212f4 https://www.encodeproject.org/files/ENCFF988JAV/@@download/ENCFF988JAV.bigWig released s3://encode-public/2017/06/30/e959e2e7-c926-4ce3-b1fe-7f391b5946ff/ENCFF988JAV.bigWig Lab custom dm6 released ENCFF769KDN bigWig bigWig signal of unique reads dm6 ENCSR396VOB Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF041PWK/ 17402288 Kevin White, UChicago e924ae2c1fe2e37f499a646c25049779 https://www.encodeproject.org/files/ENCFF769KDN/@@download/ENCFF769KDN.bigWig released s3://encode-public/2017/06/30/3d181378-f14b-4578-979e-29cbdc7a213a/ENCFF769KDN.bigWig Lab custom dm6 released ENCFF518QBI fastq fastq reads ENCSR072FJD Control ChIP-seq /fly-donors/ENCDO265ELK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 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dm3 ENCSR072FJD Control ChIP-seq /fly-donors/ENCDO265ELK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33183/'], '@type': ['Target', 'Item'], 'name': 'CG11617-dmelanogaster', 'label': 'CG11617', '@id': '/targets/CG11617-dmelanogaster/', 'title': 'CG11617 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '193a2cca-bce5-4409-833d-5587f2e5b5d2', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF518QBI/ 1130660125 Kevin White, UChicago 0193df5cb8e7ee897e5aef9f7141e49c https://www.encodeproject.org/files/ENCFF376HRI/@@download/ENCFF376HRI.bam released s3://encode-public/2017/09/13/c9455b28-9338-491a-8356-00e3f27a428a/ENCFF376HRI.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF874PCS bam bam alignments dm6 ENCSR072FJD Control ChIP-seq /fly-donors/ENCDO265ELK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33183/'], '@type': ['Target', 'Item'], 'name': 'CG11617-dmelanogaster', 'label': 'CG11617', '@id': '/targets/CG11617-dmelanogaster/', 'title': 'CG11617 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '193a2cca-bce5-4409-833d-5587f2e5b5d2', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF518QBI/ 1101049259 Kevin White, UChicago f830474eb5dba062faabe7825e875b01 https://www.encodeproject.org/files/ENCFF874PCS/@@download/ENCFF874PCS.bam released s3://encode-public/2017/09/13/6d848829-21ee-4eec-a0c5-d741182b720a/ENCFF874PCS.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF006ZBF bigWig bigWig signal of unique reads dm3 ENCSR072FJD Control ChIP-seq /fly-donors/ENCDO265ELK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33183/'], '@type': ['Target', 'Item'], 'name': 'CG11617-dmelanogaster', 'label': 'CG11617', '@id': '/targets/CG11617-dmelanogaster/', 'title': 'CG11617 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '193a2cca-bce5-4409-833d-5587f2e5b5d2', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF376HRI/ 15286482 Kevin White, UChicago b606733a95df84dd89e3211ea6d76880 https://www.encodeproject.org/files/ENCFF006ZBF/@@download/ENCFF006ZBF.bigWig released s3://encode-public/2017/09/14/d3fe565f-bb10-4a26-87f9-2f5a048e3cad/ENCFF006ZBF.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF110QYV bigWig bigWig read-depth normalized signal dm3 ENCSR072FJD Control ChIP-seq /fly-donors/ENCDO265ELK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33183/'], '@type': ['Target', 'Item'], 'name': 'CG11617-dmelanogaster', 'label': 'CG11617', '@id': '/targets/CG11617-dmelanogaster/', 'title': 'CG11617 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '193a2cca-bce5-4409-833d-5587f2e5b5d2', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF376HRI/ 15287267 Kevin White, UChicago 21d915402b63474ae47c9e2047f37efd https://www.encodeproject.org/files/ENCFF110QYV/@@download/ENCFF110QYV.bigWig released s3://encode-public/2017/09/14/312e93c6-4b8f-4f74-9637-764f0e1ad3cf/ENCFF110QYV.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF351BKD bigWig bigWig read-depth normalized signal dm6 ENCSR072FJD Control ChIP-seq /fly-donors/ENCDO265ELK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33183/'], '@type': ['Target', 'Item'], 'name': 'CG11617-dmelanogaster', 'label': 'CG11617', '@id': '/targets/CG11617-dmelanogaster/', 'title': 'CG11617 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '193a2cca-bce5-4409-833d-5587f2e5b5d2', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF874PCS/ 17501311 Kevin White, UChicago c18ca636d6cf06eda4060b610a23482a https://www.encodeproject.org/files/ENCFF351BKD/@@download/ENCFF351BKD.bigWig released s3://encode-public/2017/09/21/a6444dfd-d88b-4556-9373-c51ebc673461/ENCFF351BKD.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF026TRX bigWig bigWig signal of unique reads dm6 ENCSR072FJD Control ChIP-seq /fly-donors/ENCDO265ELK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33183/'], '@type': ['Target', 'Item'], 'name': 'CG11617-dmelanogaster', 'label': 'CG11617', '@id': '/targets/CG11617-dmelanogaster/', 'title': 'CG11617 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '193a2cca-bce5-4409-833d-5587f2e5b5d2', 'status': 'released'} DNA 2018-02-01 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF874PCS/ 17497660 Kevin White, UChicago 8b86050dfe8d530cbc8b9cd95b8f02a6 https://www.encodeproject.org/files/ENCFF026TRX/@@download/ENCFF026TRX.bigWig released s3://encode-public/2017/09/21/a76b0428-d5fe-430e-a0e1-d1e8b548fcb2/ENCFF026TRX.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF474FJA fastq fastq reads ENCSR248DUF Control ChIP-seq /fly-donors/ENCDO791JUG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40594/'], '@type': ['Target', 'Item'], 'name': 'CG14655-dmelanogaster', 'label': 'CG14655', '@id': '/targets/CG14655-dmelanogaster/', 'title': 'CG14655 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7850007d-85c5-48bd-9d81-0328154ab027', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1304592212 Kevin White, UChicago 6344579c730b5658a4dfeb0692b2a448 https://www.encodeproject.org/files/ENCFF474FJA/@@download/ENCFF474FJA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/b6bc6ae1-e644-4172-b314-637631a1445b/ENCFF474FJA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF678CWT bam bam alignments dm3 ENCSR248DUF Control ChIP-seq /fly-donors/ENCDO791JUG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40594/'], '@type': ['Target', 'Item'], 'name': 'CG14655-dmelanogaster', 'label': 'CG14655', '@id': '/targets/CG14655-dmelanogaster/', 'title': 'CG14655 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7850007d-85c5-48bd-9d81-0328154ab027', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF474FJA/ 1732101020 Kevin White, UChicago f5f84e5237496ec28be2175b756cd279 https://www.encodeproject.org/files/ENCFF678CWT/@@download/ENCFF678CWT.bam released s3://encode-public/2017/09/12/eed4707f-7655-40cd-9398-e35d73ca0168/ENCFF678CWT.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF005LNJ bam bam alignments dm6 ENCSR248DUF Control ChIP-seq /fly-donors/ENCDO791JUG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40594/'], '@type': ['Target', 'Item'], 'name': 'CG14655-dmelanogaster', 'label': 'CG14655', '@id': '/targets/CG14655-dmelanogaster/', 'title': 'CG14655 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7850007d-85c5-48bd-9d81-0328154ab027', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF474FJA/ 1727867729 Kevin White, UChicago bec497d31226f3f652c183b34889cd0a https://www.encodeproject.org/files/ENCFF005LNJ/@@download/ENCFF005LNJ.bam released s3://encode-public/2017/09/13/88c1c238-6945-489b-bcd7-99f3be988dda/ENCFF005LNJ.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF955VKR bigWig bigWig read-depth normalized signal dm6 ENCSR248DUF Control ChIP-seq /fly-donors/ENCDO791JUG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40594/'], '@type': ['Target', 'Item'], 'name': 'CG14655-dmelanogaster', 'label': 'CG14655', '@id': '/targets/CG14655-dmelanogaster/', 'title': 'CG14655 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7850007d-85c5-48bd-9d81-0328154ab027', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF005LNJ/ 17590801 Kevin White, UChicago 165458c76ccff0217a5070fb15d5df7c https://www.encodeproject.org/files/ENCFF955VKR/@@download/ENCFF955VKR.bigWig released s3://encode-public/2017/09/14/37cf09eb-0311-45fa-a6ad-84bf634b54f9/ENCFF955VKR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF655TAI bigWig bigWig signal of unique reads dm3 ENCSR248DUF Control ChIP-seq /fly-donors/ENCDO791JUG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40594/'], '@type': ['Target', 'Item'], 'name': 'CG14655-dmelanogaster', 'label': 'CG14655', '@id': '/targets/CG14655-dmelanogaster/', 'title': 'CG14655 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7850007d-85c5-48bd-9d81-0328154ab027', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF678CWT/ 15384362 Kevin White, UChicago fb8b2303a9b29fb34180e9371e5a686e https://www.encodeproject.org/files/ENCFF655TAI/@@download/ENCFF655TAI.bigWig released s3://encode-public/2017/09/14/9c2456db-9bec-490f-ab70-9013895a51f6/ENCFF655TAI.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF430TTZ bigWig bigWig read-depth normalized signal dm3 ENCSR248DUF Control ChIP-seq /fly-donors/ENCDO791JUG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40594/'], '@type': ['Target', 'Item'], 'name': 'CG14655-dmelanogaster', 'label': 'CG14655', '@id': '/targets/CG14655-dmelanogaster/', 'title': 'CG14655 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7850007d-85c5-48bd-9d81-0328154ab027', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF678CWT/ 15369304 Kevin White, UChicago 0da7c954295d31e713ec1ac54e0215ac https://www.encodeproject.org/files/ENCFF430TTZ/@@download/ENCFF430TTZ.bigWig released s3://encode-public/2017/09/14/551e9349-2f8a-437e-bfd5-ca708da7a70a/ENCFF430TTZ.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF991TVI bigWig bigWig signal of unique reads dm6 ENCSR248DUF Control ChIP-seq /fly-donors/ENCDO791JUG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40594/'], '@type': ['Target', 'Item'], 'name': 'CG14655-dmelanogaster', 'label': 'CG14655', '@id': '/targets/CG14655-dmelanogaster/', 'title': 'CG14655 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '7850007d-85c5-48bd-9d81-0328154ab027', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF005LNJ/ 17615549 Kevin White, UChicago 95d4342a0794ef9561a1efafae0f7802 https://www.encodeproject.org/files/ENCFF991TVI/@@download/ENCFF991TVI.bigWig released s3://encode-public/2017/09/14/212e6121-45ca-4336-9ba3-cab284d0a653/ENCFF991TVI.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF574KWA fastq fastq reads ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1844677136 Bradley Bernstein, Broad fcace6be3a3ff97ffc806052d6beca8f SRA:SRR5833162 https://www.encodeproject.org/files/ENCFF574KWA/@@download/ENCFF574KWA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/21c19162-d787-4c48-a129-bf6215343374/ENCFF574KWA.fastq.gz ENCFF910RDH fastq fastq reads ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1792988087 Bradley Bernstein, Broad b71427e19d813b541360b69c3ca603d5 SRA:SRR5833163 https://www.encodeproject.org/files/ENCFF910RDH/@@download/ENCFF910RDH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/dfe0733b-b7a7-4c51-935b-855cd5e6ad6c/ENCFF910RDH.fastq.gz ENCFF752KNZ bam bam unfiltered alignments hg19 ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF574KWA/, /files/ENCFF807MUK/, /files/ENCFF910RDH/ 3444345767 ENCODE Processing Pipeline 05095b1080908c1b49abe959ad2dd523 https://www.encodeproject.org/files/ENCFF752KNZ/@@download/ENCFF752KNZ.bam released s3://encode-public/2016/10/27/72d3c3d3-e8b4-48b2-b341-cca6c6168138/ENCFF752KNZ.bam ENCODE3 hg19 archived ENCFF577ISA bam bam unfiltered alignments GRCh38 ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF574KWA/, /files/ENCFF643CGH/, /files/ENCFF910RDH/ 3453088205 ENCODE Processing Pipeline 58dee9f95cd0d488af75db94d1be3054 https://www.encodeproject.org/files/ENCFF577ISA/@@download/ENCFF577ISA.bam released s3://encode-public/2016/10/27/848eec3a-363d-45b6-81bc-537d3e588967/ENCFF577ISA.bam ENCODE3 GRCh38 archived ENCFF809DRE bam bam alignments GRCh38 ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF574KWA/, /files/ENCFF643CGH/, /files/ENCFF910RDH/ 2875368960 ENCODE Processing Pipeline 93e2fe81db5f56f9ebc198e21de59607 https://www.encodeproject.org/files/ENCFF809DRE/@@download/ENCFF809DRE.bam released s3://encode-public/2016/10/27/cefb97f1-4e80-42d8-bebe-77869fec420d/ENCFF809DRE.bam ENCODE3 GRCh38 archived ENCFF496XJE bam bam alignments hg19 ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF574KWA/, /files/ENCFF807MUK/, /files/ENCFF910RDH/ 2871722739 ENCODE Processing Pipeline 31b67850483250608514ba1461060cea https://www.encodeproject.org/files/ENCFF496XJE/@@download/ENCFF496XJE.bam released s3://encode-public/2016/10/27/a3598c39-6cec-4d3f-b120-9c15898a5e43/ENCFF496XJE.bam ENCODE3 hg19 archived ENCFF950OBW bam bam unfiltered alignments GRCh38 ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF574KWA/, /files/ENCFF110MCL/, /files/ENCFF910RDH/ 3495227312 ENCODE Processing Pipeline 3901351cd2bfc37a20fcd217ee8e4707 https://www.encodeproject.org/files/ENCFF950OBW/@@download/ENCFF950OBW.bam released s3://encode-public/2020/08/20/dbb8d065-2c71-424c-87fd-c6abc4881cd1/ENCFF950OBW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF709YAL bam bam alignments GRCh38 ENCSR950CDM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0007610 tibial artery tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF574KWA/, /files/ENCFF110MCL/, /files/ENCFF910RDH/ 2937863483 ENCODE Processing Pipeline e7cb2092e11d4d4b976627010b80f68c https://www.encodeproject.org/files/ENCFF709YAL/@@download/ENCFF709YAL.bam released s3://encode-public/2020/08/20/fa9a97b8-b578-4a43-8497-84d103b0993a/ENCFF709YAL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF169UHA fastq fastq reads ENCSR246AVX Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 252735794 Kevin White, UChicago efe7d3a15e154da832d8f355c01f0e51 https://www.encodeproject.org/files/ENCFF169UHA/@@download/ENCFF169UHA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/01/13/673d567f-d475-45e6-b981-aa6c37ae15e4/ENCFF169UHA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF688RCZ bam bam alignments dm3 ENCSR246AVX Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF169UHA/ 309117670 Kevin White, UChicago f6dd3a222762adf94a2428aa9132f8c0 https://www.encodeproject.org/files/ENCFF688RCZ/@@download/ENCFF688RCZ.bam released s3://encode-public/2017/01/03/d57a225f-e2cb-4c6a-8b9e-52516baed934/ENCFF688RCZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF593XAB bam bam alignments dm6 ENCSR246AVX Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF169UHA/, /files/ENCFF479RCH/ 307380801 Kevin White, UChicago 84f385746848b7496faf9f27ce8f4f79 https://www.encodeproject.org/files/ENCFF593XAB/@@download/ENCFF593XAB.bam released s3://encode-public/2017/01/03/2295f329-9124-420a-8b69-0c60ca7bd09d/ENCFF593XAB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF148KIC bigWig bigWig signal of unique reads dm3 ENCSR246AVX Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF688RCZ/ 15041684 Kevin White, UChicago 4d19d9f94080da8380e1dc615a47405f https://www.encodeproject.org/files/ENCFF148KIC/@@download/ENCFF148KIC.bigWig released s3://encode-public/2017/09/20/ca952000-1d68-424c-b865-244cfd905792/ENCFF148KIC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF034ZXI bigWig bigWig read-depth normalized signal dm3 ENCSR246AVX Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF688RCZ/ 15069682 Kevin White, UChicago 58f2da63dae0fb0cf0964641f2dab0ff https://www.encodeproject.org/files/ENCFF034ZXI/@@download/ENCFF034ZXI.bigWig released s3://encode-public/2017/09/20/32efeaee-9ce8-4205-ad1f-77dafa523764/ENCFF034ZXI.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF956REB bigWig bigWig read-depth normalized signal dm6 ENCSR246AVX Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF593XAB/ 17222624 Kevin White, UChicago 849c0c590a9605e952f34ecdb5c8586e https://www.encodeproject.org/files/ENCFF956REB/@@download/ENCFF956REB.bigWig released s3://encode-public/2017/09/21/e4e37493-f737-48b9-a3cf-722ae73efcda/ENCFF956REB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF372INC bigWig bigWig signal of unique reads dm6 ENCSR246AVX Control ChIP-seq /fly-donors/ENCDO545YWE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36118/'], '@type': ['Target', 'Item'], 'name': 'psq-dmelanogaster', 'label': 'psq', '@id': '/targets/psq-dmelanogaster/', 'title': 'psq (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '186d02c7-c3f2-4740-8bd9-b2e36c8e20ff', 'status': 'released'} dm3 2R 6435803 6543594 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF593XAB/ 17163664 Kevin White, UChicago 3e07a9be2f9adbed16d7f7482365709e https://www.encodeproject.org/files/ENCFF372INC/@@download/ENCFF372INC.bigWig released s3://encode-public/2017/09/21/4bb8791d-84f8-4381-ad70-d5676148a0ba/ENCFF372INC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF997XZW fastq fastq reads ENCSR385GOW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 single-ended 841587949 Kevin White, UChicago 5ed8a25a0efa3c6c3f2782cc0707a7e6 https://www.encodeproject.org/files/ENCFF997XZW/@@download/ENCFF997XZW.fastq.gz Illumina Genome Analyzer /files/ENCFF969MGP/ released s3://encode-public/2017/12/22/5d6b3c05-b9fa-482b-8ce6-fa9160299511/ENCFF997XZW.fastq.gz ENCFF874BBH bam bam alignments dm3 ENCSR385GOW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF997XZW/, /files/ENCFF059UHX/ 944611151 Kevin White, UChicago 66b62fbd08abf4fc8a1a629503445e09 https://www.encodeproject.org/files/ENCFF874BBH/@@download/ENCFF874BBH.bam released s3://encode-public/2017/12/22/ee3e49e0-0853-41a0-afe7-999bf6e41cd6/ENCFF874BBH.bam Lab custom dm3 archived ENCFF130XNX bam bam alignments dm6 ENCSR385GOW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF997XZW/, /files/ENCFF479RCH/ 924991974 Kevin White, UChicago deb69091e43f4ffeba951e7c402fe13a https://www.encodeproject.org/files/ENCFF130XNX/@@download/ENCFF130XNX.bam released s3://encode-public/2017/12/24/8757469f-5ee7-4c0c-b1bd-71d965fdb58d/ENCFF130XNX.bam Lab custom dm6 released ENCFF431JXL bigWig bigWig read-depth normalized signal dm3 ENCSR385GOW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF874BBH/ 15578650 Kevin White, UChicago 6ebc86ec9c65ba4b7481d27ae4151796 https://www.encodeproject.org/files/ENCFF431JXL/@@download/ENCFF431JXL.bigWig released s3://encode-public/2017/12/24/df7c0f83-7d7a-45dd-990a-2b34c4ff7b7c/ENCFF431JXL.bigWig Lab custom dm3 archived ENCFF030DFA bigWig bigWig signal of unique reads dm3 ENCSR385GOW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF874BBH/ 15594741 Kevin White, UChicago 47e3e65ed5a871a4792dc61053d5b047 https://www.encodeproject.org/files/ENCFF030DFA/@@download/ENCFF030DFA.bigWig released s3://encode-public/2017/12/24/638de65d-67f6-455b-b356-b3d859a3c28c/ENCFF030DFA.bigWig Lab custom dm3 archived ENCFF472SIC bigWig bigWig signal of unique reads dm6 ENCSR385GOW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF130XNX/ 17768426 Kevin White, UChicago 48b7a63083501b0e6d9f437e36106286 https://www.encodeproject.org/files/ENCFF472SIC/@@download/ENCFF472SIC.bigWig released s3://encode-public/2017/12/24/0c9cceac-2480-4fd8-8e8e-cc9ebc1923b8/ENCFF472SIC.bigWig Lab custom dm6 released ENCFF733BPI bigWig bigWig read-depth normalized signal dm6 ENCSR385GOW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF130XNX/ 17757529 Kevin White, UChicago 483ec3fc12337ce05057cf9fa0ac5aa2 https://www.encodeproject.org/files/ENCFF733BPI/@@download/ENCFF733BPI.bigWig released s3://encode-public/2017/12/24/d19098a3-7604-4fd6-8640-b3546bee177d/ENCFF733BPI.bigWig Lab custom dm6 released ENCFF557MYB fastq fastq reads ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF962LAJ/ 5996914237 Michael Snyder, Stanford aff38d26c4f6829d114fd26a1c29177f SRA:SRR6213711 https://www.encodeproject.org/files/ENCFF557MYB/@@download/ENCFF557MYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/13/7b1c259c-3f52-48fb-9687-dcfeb6f46cf2/ENCFF557MYB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF962LAJ fastq fastq reads ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF557MYB/ 5168620463 Michael Snyder, Stanford 3dc2ded9019976eab95082d268f5e2aa SRA:SRR6213711 https://www.encodeproject.org/files/ENCFF962LAJ/@@download/ENCFF962LAJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/13/d6cc7f83-df60-4689-8833-cf06b7b24789/ENCFF962LAJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF153ZME bam bam unfiltered alignments hg19 ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF557MYB/, /files/ENCFF962LAJ/ 8911321128 ENCODE Processing Pipeline 7474e197340b2ad27f1735bc65740b08 https://www.encodeproject.org/files/ENCFF153ZME/@@download/ENCFF153ZME.bam released s3://encode-public/2016/10/27/6fec4d74-6f1e-4079-bd4e-c91a0feb038d/ENCFF153ZME.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF460DKV bam bam alignments hg19 ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF557MYB/, /files/ENCFF962LAJ/ 4723098549 ENCODE Processing Pipeline ec0c33bcdb6516f65f9f7d5c15e18c71 https://www.encodeproject.org/files/ENCFF460DKV/@@download/ENCFF460DKV.bam released s3://encode-public/2016/10/27/aaed1edb-208b-4e01-818c-032dd5c28dfc/ENCFF460DKV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF764FNP bam bam unfiltered alignments GRCh38 ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF557MYB/, /files/ENCFF962LAJ/ 8897356711 ENCODE Processing Pipeline 7e18fd3be091ea54dc42e206e32d496e https://www.encodeproject.org/files/ENCFF764FNP/@@download/ENCFF764FNP.bam released s3://encode-public/2016/10/27/b9d73311-0842-4028-834f-509a7123e721/ENCFF764FNP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF983YSS bam bam alignments GRCh38 ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF557MYB/, /files/ENCFF962LAJ/ 4734446901 ENCODE Processing Pipeline 8b69261d13708a3c2e0123e6042c6373 https://www.encodeproject.org/files/ENCFF983YSS/@@download/ENCFF983YSS.bam released s3://encode-public/2016/10/27/3becb820-d6ea-4c20-bff1-9496e23b7161/ENCFF983YSS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF441GOM bam bam unfiltered alignments GRCh38 ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF962LAJ/, /files/ENCFF557MYB/ 8938024119 ENCODE Processing Pipeline 35abb86958277f8261841593566a2921 https://www.encodeproject.org/files/ENCFF441GOM/@@download/ENCFF441GOM.bam released s3://encode-public/2020/06/02/8b6d08dc-487d-4eb2-bc71-62bc63f85f04/ENCFF441GOM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF240MME bam bam alignments GRCh38 ENCSR692LIH Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF962LAJ/, /files/ENCFF557MYB/ 4619741187 ENCODE Processing Pipeline 56692fe351bcb17b317f8788aaae5fd8 https://www.encodeproject.org/files/ENCFF240MME/@@download/ENCFF240MME.bam released s3://encode-public/2020/06/02/c66b4796-292d-4f36-8b65-16fb42994bf3/ENCFF240MME.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF590BXZ fastq fastq reads ENCSR967MNR Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA modENCODE >200 1 1_1 44 single-ended 748350591 Kevin White, UChicago 44ce468ec4e7babddbbab917fd5de407 https://www.encodeproject.org/files/ENCFF590BXZ/@@download/ENCFF590BXZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF848KRC/ archived s3://encode-public/2016/08/22/327d5738-9cf7-4bfe-b2ba-fd0b9361cb1b/ENCFF590BXZ.fastq.gz lacking processed data ENCFF429QXT tagAlign tagAlign alignments hg19 ENCSR080WMI Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF295BES/ 170116002 Anshul Kundaje, Stanford c1b5bcba7b0342ab975bcad21e3c9532 https://www.encodeproject.org/files/ENCFF429QXT/@@download/ENCFF429QXT.tagAlign.gz archived s3://encode-public/2016/03/30/a848e7e0-7f08-4adb-ac35-ee3bf22d856c/ENCFF429QXT.tagAlign.gz Lab custom hg19 archived low read length ENCFF630LAT bam bam unfiltered alignments GRCh38 ENCSR080WMI Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF295BES/ 1770082984 ENCODE Processing Pipeline d767a7b5b3a8c21e85d03afc9adb8ea9 https://www.encodeproject.org/files/ENCFF630LAT/@@download/ENCFF630LAT.bam released s3://encode-public/2020/10/08/6c5f2008-4d89-42db-89ba-2b22edc7ba8b/ENCFF630LAT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF295BES fastq fastq reads ENCSR080WMI Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1492367360 Zhiping Weng, UMass 2efc0b869e53019cd69e983ba2163d02 SRA:SRR304978 https://www.encodeproject.org/files/ENCFF295BES/@@download/ENCFF295BES.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/11/17/2dbf85ea-fac4-4d05-9f7a-d335584baa03/ENCFF295BES.fastq.gz low read length ENCFF042VIZ bam bam unfiltered alignments GRCh38 ENCSR080WMI Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF295BES/ 1815972729 ENCODE Processing Pipeline 2645e88b16f2319a0b053c81133953a4 https://www.encodeproject.org/files/ENCFF042VIZ/@@download/ENCFF042VIZ.bam released s3://encode-public/2016/12/19/7fc64990-2cef-4c58-90cb-80ca8cac29dd/ENCFF042VIZ.bam ENCODE3 GRCh38 archived low read length ENCFF100KWF bam bam unfiltered alignments hg19 ENCSR080WMI Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF295BES/ 1807529315 ENCODE Processing Pipeline 916a5ea23e7bf4895c28101b745ecc85 https://www.encodeproject.org/files/ENCFF100KWF/@@download/ENCFF100KWF.bam released s3://encode-public/2016/12/19/e7e77658-b624-4c78-bc67-42e433269a61/ENCFF100KWF.bam ENCODE3 hg19 archived low read length ENCFF033ZAD bam bam alignments GRCh38 ENCSR080WMI Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF295BES/ 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23394/'], '@type': ['Target', 'Item'], 'name': 'ADNP-human', 'label': 'ADNP', '@id': '/targets/ADNP-human/', 'title': 'ADNP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e310f899-8622-4aa7-8c48-8c2199dc8d15', 'status': 'released'} hg19 20 49494154 49700876 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF165PUN/, /files/ENCFF080EHD/ 1598228074 ENCODE Processing Pipeline c0dc2c2e74288c22b799e105cfc0760e https://www.encodeproject.org/files/ENCFF503YHD/@@download/ENCFF503YHD.bam released s3://encode-public/2016/04/23/70b038cd-7ed7-49d7-8944-f00aad0534d5/ENCFF503YHD.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF229TUB bam bam unfiltered alignments GRCh38 ENCSR845MXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23394/'], '@type': ['Target', 'Item'], 'name': 'ADNP-human', 'label': 'ADNP', '@id': '/targets/ADNP-human/', 'title': 'ADNP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e310f899-8622-4aa7-8c48-8c2199dc8d15', 'status': 'released'} hg19 20 49494154 49700876 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF165PUN/, /files/ENCFF080EHD/ 2149718417 ENCODE Processing Pipeline 1b2177b24d62a5c1337c2c8e250abec2 https://www.encodeproject.org/files/ENCFF229TUB/@@download/ENCFF229TUB.bam released s3://encode-public/2016/05/06/e57c6b16-7148-4b51-97de-6aa3d3f8be44/ENCFF229TUB.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF609HLC bam bam alignments GRCh38 ENCSR845MXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23394/'], '@type': ['Target', 'Item'], 'name': 'ADNP-human', 'label': 'ADNP', '@id': '/targets/ADNP-human/', 'title': 'ADNP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e310f899-8622-4aa7-8c48-8c2199dc8d15', 'status': 'released'} hg19 20 49494154 49700876 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF165PUN/, /files/ENCFF080EHD/ 1597512320 ENCODE Processing Pipeline eb693920e8987751778d5d7aaef9481d https://www.encodeproject.org/files/ENCFF609HLC/@@download/ENCFF609HLC.bam released s3://encode-public/2016/05/06/79aa305a-0af8-4d5f-9b56-2fd4e110a630/ENCFF609HLC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF264DIC bam bam unfiltered alignments GRCh38 ENCSR845MXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23394/'], '@type': ['Target', 'Item'], 'name': 'ADNP-human', 'label': 'ADNP', '@id': '/targets/ADNP-human/', 'title': 'ADNP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e310f899-8622-4aa7-8c48-8c2199dc8d15', 'status': 'released'} hg19 20 49494154 49700876 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF080EHD/, /files/ENCFF165PUN/ 2147820575 ENCODE Processing Pipeline 194fdf8ab02361ae453b3729688cf40f https://www.encodeproject.org/files/ENCFF264DIC/@@download/ENCFF264DIC.bam released s3://encode-public/2020/10/27/fb125be8-b180-4421-b95a-0ed06cf67c86/ENCFF264DIC.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF732SRZ bam bam alignments GRCh38 ENCSR845MXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23394/'], '@type': ['Target', 'Item'], 'name': 'ADNP-human', 'label': 'ADNP', '@id': '/targets/ADNP-human/', 'title': 'ADNP (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e310f899-8622-4aa7-8c48-8c2199dc8d15', 'status': 'released'} hg19 20 49494154 49700876 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF080EHD/, /files/ENCFF165PUN/ 1698664973 ENCODE Processing Pipeline beb0694cb323020c2dcdb86d188c2da5 https://www.encodeproject.org/files/ENCFF732SRZ/@@download/ENCFF732SRZ.bam released s3://encode-public/2020/10/27/6fb0ff91-927d-4f47-a7b5-26b6b841a5a9/ENCFF732SRZ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF952JNU bam bam unfiltered alignments hg19 ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF011LJK/, /files/ENCFF649MVC/, /files/ENCFF807MUK/ 2509700887 ENCODE Processing Pipeline 8a7977cffd101a459b91353521d39484 https://www.encodeproject.org/files/ENCFF952JNU/@@download/ENCFF952JNU.bam released s3://encode-public/2018/02/22/acc6bade-760f-4721-8b6f-bff790bb63b7/ENCFF952JNU.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF649MVC fastq fastq reads ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 974012362 Kevin White, UChicago 441679c17ed2207910a5bef76933176b SRA:SRR6214149 https://www.encodeproject.org/files/ENCFF649MVC/@@download/ENCFF649MVC.fastq.gz Illumina HiSeq 2500 /files/ENCFF011LJK/ released s3://encode-public/2016/03/14/7ec2ce53-54e2-4576-b485-8ed10a9eddb7/ENCFF649MVC.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF011LJK fastq fastq reads ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1343482331 Kevin White, UChicago d8bdd8fe0dae9a8d4331de62ad507e63 SRA:SRR6214150 https://www.encodeproject.org/files/ENCFF011LJK/@@download/ENCFF011LJK.fastq.gz Illumina HiSeq 2000 /files/ENCFF067NSO/, /files/ENCFF679NOJ/ released s3://encode-public/2016/03/22/66e02e4c-46ee-4b09-8a88-2df280516de1/ENCFF011LJK.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF736LGI bam bam alignments hg19 ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF011LJK/, /files/ENCFF649MVC/, /files/ENCFF807MUK/ 1784930489 ENCODE Processing Pipeline 9318079674a8603a906334c3628d38e6 https://www.encodeproject.org/files/ENCFF736LGI/@@download/ENCFF736LGI.bam released s3://encode-public/2016/04/23/f303040f-5806-41ff-aad6-18c037025bf1/ENCFF736LGI.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF368AFY bam bam unfiltered alignments GRCh38 ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF011LJK/, /files/ENCFF649MVC/, /files/ENCFF643CGH/ 2519288061 ENCODE Processing Pipeline 5dbe12b5d6c61469b270a7ba5da24c1a https://www.encodeproject.org/files/ENCFF368AFY/@@download/ENCFF368AFY.bam released s3://encode-public/2016/05/06/0bbd76aa-a0ac-493b-96b6-d069c28fc037/ENCFF368AFY.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF274BOZ bam bam alignments GRCh38 ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF011LJK/, /files/ENCFF649MVC/, /files/ENCFF643CGH/ 1784582018 ENCODE Processing Pipeline e78c9e5fe06ba8132f80e6d402375cef https://www.encodeproject.org/files/ENCFF274BOZ/@@download/ENCFF274BOZ.bam released s3://encode-public/2016/05/06/9acc5710-10da-4a8b-a2db-10df8b4d3bfc/ENCFF274BOZ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF453XAA bam bam alignments GRCh38 ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF649MVC/, /files/ENCFF011LJK/, /files/ENCFF110MCL/ 1852228521 ENCODE Processing Pipeline 51d1c7f53b363e48699f4117b7954a1a https://www.encodeproject.org/files/ENCFF453XAA/@@download/ENCFF453XAA.bam released s3://encode-public/2020/10/27/610a6b82-40f6-463e-a894-fa62fa9a9507/ENCFF453XAA.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF495ARG bam bam unfiltered alignments GRCh38 ENCSR969FPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:BACH1'], 'aliases': ['michael-snyder:TS-103'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/571/'], '@type': ['Target', 'Item'], 'label': 'BACH1', 'title': 'BACH1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e92c6c8d-897d-413e-9fb7-bcd0bf32e7a0', 'schema_version': '14', 'name': 'BACH1-human', '@id': '/targets/BACH1-human/', 'status': 'released'} hg19 21 30648581 30798861 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF649MVC/, /files/ENCFF011LJK/, /files/ENCFF110MCL/ 2552417346 ENCODE Processing Pipeline af36986bbaa496e2a77faa4873cad9cf https://www.encodeproject.org/files/ENCFF495ARG/@@download/ENCFF495ARG.bam released s3://encode-public/2020/10/27/8b577dff-a6d7-4728-8eae-0641b77c6958/ENCFF495ARG.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF997BAS fastq fastq reads ENCSR149EOW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1302910577 Bradley Bernstein, Broad e290908c964999efa54a4e250391938e SRA:SRR8275094 https://www.encodeproject.org/files/ENCFF997BAS/@@download/ENCFF997BAS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/63ea381f-e9a2-4017-b29c-64db336e26dd/ENCFF997BAS.fastq.gz ENCFF634JMR fastq fastq reads ENCSR149EOW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1286786060 Bradley Bernstein, Broad 47cae4653d82f8916ca873458347e294 SRA:SRR8275095 https://www.encodeproject.org/files/ENCFF634JMR/@@download/ENCFF634JMR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/f06b7e88-2dbc-4520-9bbf-4b8a5c86a206/ENCFF634JMR.fastq.gz ENCFF496PZE bam bam unfiltered alignments GRCh38 ENCSR149EOW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF997BAS/, /files/ENCFF634JMR/, /files/ENCFF643CGH/ 2508905803 ENCODE Processing Pipeline 745f469496f3b0decfa882156b32083d https://www.encodeproject.org/files/ENCFF496PZE/@@download/ENCFF496PZE.bam released s3://encode-public/2016/10/27/c808839a-948d-418c-bb67-2ae3f0011cb3/ENCFF496PZE.bam ENCODE3 GRCh38 archived ENCFF019QSC bam bam alignments GRCh38 ENCSR149EOW Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF997BAS/, /files/ENCFF634JMR/, /files/ENCFF643CGH/ 2109499846 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s3://encode-public/2020/06/14/c58d0f0e-5ea9-46eb-b608-8e1b7a8b629f/ENCFF948KOG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF475UOY fastq fastq reads ENCSR302PAQ Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 868694307 Kevin White, UChicago 88e0220d5da9f06c1621d676df849c7f 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2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF204PNY/ 15504590 Kevin White, UChicago 9d735f613b8dff6085be8d58b1c5a988 https://www.encodeproject.org/files/ENCFF601JBA/@@download/ENCFF601JBA.bigWig released s3://encode-public/2017/06/29/2812091c-0037-4ecf-b262-0c931cfb06cf/ENCFF601JBA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF956ZMN bigWig bigWig signal of unique reads dm6 ENCSR302PAQ Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF946EEH/ 17760642 Kevin White, UChicago 9786b6cc93e0c1a5241332c523ba7240 https://www.encodeproject.org/files/ENCFF956ZMN/@@download/ENCFF956ZMN.bigWig released s3://encode-public/2017/07/03/abee93ce-7b54-49aa-be0f-b07e3875bd98/ENCFF956ZMN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF120VXG bigWig bigWig read-depth normalized signal dm6 ENCSR302PAQ Control ChIP-seq /fly-donors/ENCDO863YTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40832/'], '@type': ['Target', 'Item'], 'name': 'Dfd-dmelanogaster', 'label': 'Dfd', '@id': '/targets/Dfd-dmelanogaster/', 'title': 'Dfd (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8ac3457f-3c14-40cf-aab3-3e95b35fbe57', 'status': 'released'} DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF946EEH/ 17722594 Kevin White, UChicago 0d207a0c3fa2fa6f0d962ea4c1366f5b https://www.encodeproject.org/files/ENCFF120VXG/@@download/ENCFF120VXG.bigWig released s3://encode-public/2017/07/03/d82ca009-212e-458b-96c6-de7a6039c2f0/ENCFF120VXG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF954LMM bam bam unfiltered alignments hg19 ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF067HZB/, /files/ENCFF807MUK/, /files/ENCFF795KJT/ 6235438772 ENCODE Processing Pipeline 3a61979a7c254fdf498e9447654484b8 https://www.encodeproject.org/files/ENCFF954LMM/@@download/ENCFF954LMM.bam released s3://encode-public/2018/02/21/62db2224-436f-460d-a56e-86076fea3f49/ENCFF954LMM.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF067HZB fastq fastq reads ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF795KJT/ 2917469165 Michael Snyder, Stanford d8d470b5d43ab2db6aa0913da30b39c9 SRA:SRR5111748 https://www.encodeproject.org/files/ENCFF067HZB/@@download/ENCFF067HZB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/366e7eba-bf59-4fa8-85a4-a36ae5455941/ENCFF067HZB.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF795KJT fastq fastq reads ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF067HZB/ 2852911140 Michael Snyder, Stanford 181e5f1b5066490e060060bdd03c3d11 SRA:SRR5111748 https://www.encodeproject.org/files/ENCFF795KJT/@@download/ENCFF795KJT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/6d3e05e4-7360-4293-9663-369ed2338460/ENCFF795KJT.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF387AIX bam bam alignments hg19 ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF067HZB/, /files/ENCFF807MUK/, /files/ENCFF795KJT/ 5144376984 ENCODE Processing Pipeline 4ea5c30b471b5d8783010abf0765fa09 https://www.encodeproject.org/files/ENCFF387AIX/@@download/ENCFF387AIX.bam released s3://encode-public/2015/12/09/b3286e7f-4720-4ab1-b3fc-d906fc0b8da0/ENCFF387AIX.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF994WBV bam bam unfiltered alignments GRCh38 ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF067HZB/, /files/ENCFF643CGH/, /files/ENCFF795KJT/ 6247281930 ENCODE Processing Pipeline 68cb96010155ce9e927658367a5c6884 https://www.encodeproject.org/files/ENCFF994WBV/@@download/ENCFF994WBV.bam released s3://encode-public/2016/05/06/0acb88a2-6937-4476-bb9e-7ab863896551/ENCFF994WBV.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF824YEY bam bam alignments GRCh38 ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF067HZB/, /files/ENCFF643CGH/, /files/ENCFF795KJT/ 5148884795 ENCODE Processing Pipeline 0e81a64e85b6c545213806cf86534abc https://www.encodeproject.org/files/ENCFF824YEY/@@download/ENCFF824YEY.bam released s3://encode-public/2016/05/06/cfda3d5c-99f1-4929-8d79-ee6d187cc94f/ENCFF824YEY.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF064PNY bam bam unfiltered alignments GRCh38 ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF067HZB/, /files/ENCFF795KJT/ 6162117064 ENCODE Processing Pipeline 02e56d5f561217945fa072aac4a1d398 https://www.encodeproject.org/files/ENCFF064PNY/@@download/ENCFF064PNY.bam released s3://encode-public/2020/06/13/40a0ae8a-742c-48b6-9abe-9c1a84c73c4e/ENCFF064PNY.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF789EFG bam bam alignments GRCh38 ENCSR545WDI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-220'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5970/'], '@type': ['Target', 'Item'], 'name': 'RELA-human', 'label': 'RELA', '@id': '/targets/RELA-human/', 'title': 'RELA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3c44d92c-436a-4be6-a5cd-13f522313efa', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF067HZB/, /files/ENCFF795KJT/ 4867071727 ENCODE Processing Pipeline 281741fe030024bcca6e21ea401f1c98 https://www.encodeproject.org/files/ENCFF789EFG/@@download/ENCFF789EFG.bam released s3://encode-public/2020/06/13/15ffb84f-311e-46af-841d-77a32759f1d7/ENCFF789EFG.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF087SCF fastq fastq reads ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 single-ended 1110377463 Xiang-Dong Fu, UCSD 650dc7fdd7112b61c8810c4b58905371 SRA:SRR14104150 https://www.encodeproject.org/files/ENCFF087SCF/@@download/ENCFF087SCF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/a42326d2-ef73-4409-ab71-40d78bd10d35/ENCFF087SCF.fastq.gz low read length ENCFF439OMO fastq fastq reads ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 single-ended 1217961444 Xiang-Dong Fu, UCSD 2edb7ca73268cf1ff603f9052c5b19d3 SRA:SRR14104151 https://www.encodeproject.org/files/ENCFF439OMO/@@download/ENCFF439OMO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/3087d3b4-e404-4e20-a27c-6a2843353483/ENCFF439OMO.fastq.gz low read length ENCFF221JFQ bam bam alignments hg19 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF087SCF/, /files/ENCFF807MUK/ 1208451653 ENCODE Processing Pipeline a83c2054221be17115b54df090458ce2 https://www.encodeproject.org/files/ENCFF221JFQ/@@download/ENCFF221JFQ.bam released s3://encode-public/2016/02/26/eb668012-fe41-446d-8092-b7808f4eda49/ENCFF221JFQ.bam ENCODE3 hg19 archived low read length ENCFF021SBT bam bam alignments hg19 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF439OMO/ 1326603719 ENCODE Processing Pipeline ad24f9fd29849ff395376b6350374257 https://www.encodeproject.org/files/ENCFF021SBT/@@download/ENCFF021SBT.bam released s3://encode-public/2016/02/26/845fe3d6-9072-419d-877e-a382574a327b/ENCFF021SBT.bam ENCODE3 hg19 archived low read length ENCFF274SSL bam bam unfiltered alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF087SCF/, /files/ENCFF643CGH/ 1612603217 ENCODE Processing Pipeline 5cdf1c5bb999aeb4176988d309d08efa https://www.encodeproject.org/files/ENCFF274SSL/@@download/ENCFF274SSL.bam released s3://encode-public/2016/05/06/3a28c6cc-df09-423a-8e52-b0be40aee7ae/ENCFF274SSL.bam ENCODE3 GRCh38 archived low read length ENCFF375ZQH bam bam alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF087SCF/, /files/ENCFF643CGH/ 1207352457 ENCODE Processing Pipeline 7246f3b076dac2aba51fff0474a30079 https://www.encodeproject.org/files/ENCFF375ZQH/@@download/ENCFF375ZQH.bam released s3://encode-public/2016/05/06/09c642d1-ab3f-48e9-929f-0885f35d0c68/ENCFF375ZQH.bam ENCODE3 GRCh38 archived low read length ENCFF282EIV bam bam unfiltered alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF439OMO/ 1776930662 ENCODE Processing Pipeline 954de9163119331e1c0589df5d725fa7 https://www.encodeproject.org/files/ENCFF282EIV/@@download/ENCFF282EIV.bam released s3://encode-public/2016/05/06/222125c8-3717-405d-830d-0f932cced0f2/ENCFF282EIV.bam ENCODE3 GRCh38 archived low read length ENCFF819KWY bam bam alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF439OMO/ 1325414711 ENCODE Processing Pipeline c465d983b0b5a5e05b19eabda2c99378 https://www.encodeproject.org/files/ENCFF819KWY/@@download/ENCFF819KWY.bam released s3://encode-public/2016/05/06/3bd17e8f-d4b5-483b-8ab1-23e6f33e21c5/ENCFF819KWY.bam ENCODE3 GRCh38 archived low read length ENCFF194KGT bam bam unfiltered alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF087SCF/, /files/ENCFF110MCL/ 1589674935 ENCODE Processing Pipeline 90a0e201c55324468ac274859d2e58c6 https://www.encodeproject.org/files/ENCFF194KGT/@@download/ENCFF194KGT.bam released s3://encode-public/2020/10/27/102963ed-e80b-4b5f-9611-2fee88661e6d/ENCFF194KGT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF330GUW bam bam unfiltered alignments hg19 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF087SCF/, /files/ENCFF807MUK/ 1606516291 ENCODE Processing Pipeline d49dd890496ceaff02840a366b05bebf https://www.encodeproject.org/files/ENCFF330GUW/@@download/ENCFF330GUW.bam released s3://encode-public/2018/01/12/5091d106-4313-4d13-bb47-e36bd16845ee/ENCFF330GUW.bam ENCODE3 hg19 archived low read length ENCFF619ADI bam bam unfiltered alignments hg19 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF439OMO/ 1770276691 ENCODE Processing Pipeline 69f211ce92c03a631483c420cd34a171 https://www.encodeproject.org/files/ENCFF619ADI/@@download/ENCFF619ADI.bam released s3://encode-public/2018/01/12/152a3f34-dfd5-4f66-b79c-26493e408913/ENCFF619ADI.bam ENCODE3 hg19 archived low read length ENCFF536WYM bam bam unfiltered alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF439OMO/, /files/ENCFF110MCL/ 1747968817 ENCODE Processing Pipeline b78dd1df3e2e7a112fe7ea690d5d2756 https://www.encodeproject.org/files/ENCFF536WYM/@@download/ENCFF536WYM.bam released s3://encode-public/2020/10/27/267557ce-99e0-4e23-945a-d18b1b8fc40a/ENCFF536WYM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF468FMG bam bam alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF439OMO/, /files/ENCFF110MCL/ 1374681771 ENCODE Processing Pipeline 6736a8bcf26106af6c698b602fe156de https://www.encodeproject.org/files/ENCFF468FMG/@@download/ENCFF468FMG.bam released s3://encode-public/2020/10/27/6db46918-589c-4e14-b895-f6a6f289b0db/ENCFF468FMG.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF101ILI bam bam alignments GRCh38 ENCSR814UCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF087SCF/, /files/ENCFF110MCL/ 1246234552 ENCODE Processing Pipeline 4df96909506501d527c76bc4cabf3ae0 https://www.encodeproject.org/files/ENCFF101ILI/@@download/ENCFF101ILI.bam released s3://encode-public/2020/10/27/03efd647-ca0b-4470-ad2e-5941b375fabf/ENCFF101ILI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF027QDX bam bam redacted alignments GRCh38 ENCSR173FCJ Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002326 luminal epithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF200UCY/, /files/ENCFF643CGH/ 262168791 ENCODE Processing Pipeline c997702c5e4dbc34ab84f5ccd6c6cdfd https://www.encodeproject.org/files/ENCFF027QDX/@@download/ENCFF027QDX.bam released s3://encode-public/2017/11/09/b705dcdc-4d21-4c1f-972c-1dc37aa2dc91/ENCFF027QDX.bam ENCODE3 GRCh38 archived ENCFF783BSQ bam bam redacted unfiltered alignments GRCh38 ENCSR173FCJ Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002326 luminal epithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF200UCY/, /files/ENCFF643CGH/ 339102979 ENCODE Processing Pipeline 97363c92115ba4f9254eabacb6a3eaec https://www.encodeproject.org/files/ENCFF783BSQ/@@download/ENCFF783BSQ.bam released s3://encode-public/2017/11/09/dfda1e8b-2351-445e-96a6-f2b29e6f029a/ENCFF783BSQ.bam ENCODE3 GRCh38 archived ENCFF255ABL bam bam redacted alignments hg19 ENCSR173FCJ Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002326 luminal epithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF200UCY/, /files/ENCFF807MUK/ 261688045 ENCODE Processing Pipeline f091d102003c7df0d94448241569da43 https://www.encodeproject.org/files/ENCFF255ABL/@@download/ENCFF255ABL.bam released s3://encode-public/2018/01/20/20932fc4-7fa5-4780-be3d-b1acf85ffefb/ENCFF255ABL.bam ENCODE3 hg19 archived ENCFF184BZV bam bam redacted unfiltered alignments hg19 ENCSR173FCJ Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002326 luminal epithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF200UCY/, /files/ENCFF807MUK/ 333039108 ENCODE Processing Pipeline d220c1b1c097e4f834779c70fba39817 https://www.encodeproject.org/files/ENCFF184BZV/@@download/ENCFF184BZV.bam released s3://encode-public/2018/01/20/91cfd0d4-74e1-49fd-9e06-4191781a84e9/ENCFF184BZV.bam ENCODE3 hg19 archived ENCFF700MTE bam bam redacted alignments GRCh38 ENCSR173FCJ Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002326 luminal epithelial cell of mammary gland primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF971LHT/ 1531557748 ENCODE Processing Pipeline f0aca2e4c3b0b0308a90a2a71ed15e49 https://www.encodeproject.org/files/ENCFF700MTE/@@download/ENCFF700MTE.bam released s3://encode-public/2021/01/28/97102efe-1e75-4836-82aa-1229a8d1abc0/ENCFF700MTE.bam ENCODE4 v1.7.0 GRCh38 released ENCFF763GIU tagAlign tagAlign alignments hg19 ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF250CGU/ 115879138 Anshul Kundaje, Stanford 13014f37c2bdf87a960903db3e0b4aa1 https://www.encodeproject.org/files/ENCFF763GIU/@@download/ENCFF763GIU.tagAlign.gz archived s3://encode-public/2016/03/30/104fc77a-fb05-4114-8962-bcc3a71422c1/ENCFF763GIU.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF444MQP bam bam unfiltered alignments GRCh38 ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF250CGU/, /files/ENCFF110MCL/ 1090488041 ENCODE Processing Pipeline 562277a629b3e0c256922996f828e6f3 https://www.encodeproject.org/files/ENCFF444MQP/@@download/ENCFF444MQP.bam released s3://encode-public/2020/10/08/57f26071-7f82-495b-8ee8-b2344f113733/ENCFF444MQP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF294VXZ bam bam alignments GRCh38 ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF250CGU/, /files/ENCFF110MCL/ 734345401 ENCODE Processing Pipeline 9ed5ed944ca722a76dd0d07a5995528c https://www.encodeproject.org/files/ENCFF294VXZ/@@download/ENCFF294VXZ.bam released s3://encode-public/2020/10/08/08049ef8-9fa1-432b-a366-d3d6b5d3f6f7/ENCFF294VXZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length ENCFF250CGU fastq fastq reads ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 921123736 Zhiping Weng, UMass 313dda89ab6a9cf115018e2caa8b68ef SRA:SRR401267 https://www.encodeproject.org/files/ENCFF250CGU/@@download/ENCFF250CGU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/527b472f-1557-41d6-ac99-0ca2a8f5e3c3/ENCFF250CGU.fastq.gz mild to moderate bottlenecking, low read depth, low read length ENCFF449PVZ bam bam unfiltered alignments hg19 ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF250CGU/ 1123680721 ENCODE Processing Pipeline 686424df7181f88b34b29fc55e43255a https://www.encodeproject.org/files/ENCFF449PVZ/@@download/ENCFF449PVZ.bam released s3://encode-public/2016/12/19/2e35a212-3ac6-427a-8f3f-d90bcb6aa7d7/ENCFF449PVZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF868KAC bam bam alignments hg19 ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF250CGU/ 660578669 ENCODE Processing Pipeline 3e957b84c2fb220784af29c7ec15f90f https://www.encodeproject.org/files/ENCFF868KAC/@@download/ENCFF868KAC.bam released s3://encode-public/2016/12/19/8a516083-7fa7-4fb2-a7b9-ae25c7030856/ENCFF868KAC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length ENCFF043ZLF bam bam unfiltered alignments GRCh38 ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF250CGU/ 1128516204 ENCODE Processing Pipeline dd6b17f7104d36db0cad0b11a85bac33 https://www.encodeproject.org/files/ENCFF043ZLF/@@download/ENCFF043ZLF.bam released s3://encode-public/2016/12/19/fb845d15-ce5a-4311-8562-726fe6be2e92/ENCFF043ZLF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF621ETP bam bam alignments GRCh38 ENCSR810RRR Control ChIP-seq /human-donors/ENCDO000AAW/ NTR:0000856 mesendoderm in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF250CGU/ 660596358 ENCODE Processing Pipeline a0d6685e1cdf5df8ca98d20bc964a3a3 https://www.encodeproject.org/files/ENCFF621ETP/@@download/ENCFF621ETP.bam released s3://encode-public/2016/12/19/69eb8a17-5c58-4f72-9e94-1a7aa421b6d9/ENCFF621ETP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, low read length ENCFF957AGD bam bam unfiltered alignments hg19 ENCSR672RME Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1573'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7728/'], '@type': ['Target', 'Item'], 'name': 'ZNF175-human', 'label': 'ZNF175', '@id': '/targets/ZNF175-human/', 'title': 'ZNF175 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '91a63da3-3f5f-4589-a592-a2262d02cf11', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF728HNA/ 983988326 ENCODE Processing Pipeline 42e2aaf42c69c0751b8b2905eb3d0318 https://www.encodeproject.org/files/ENCFF957AGD/@@download/ENCFF957AGD.bam released s3://encode-public/2018/02/22/449b8c8c-a50a-4058-9f38-ebfe951a0b8f/ENCFF957AGD.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF728HNA fastq fastq reads ENCSR672RME Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1573'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7728/'], '@type': ['Target', 'Item'], 'name': 'ZNF175-human', 'label': 'ZNF175', '@id': '/targets/ZNF175-human/', 'title': 'ZNF175 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '91a63da3-3f5f-4589-a592-a2262d02cf11', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 900240405 Kevin White, UChicago 3bc3f7c2e807ec388ca44e253d078377 SRA:SRR6213619 https://www.encodeproject.org/files/ENCFF728HNA/@@download/ENCFF728HNA.fastq.gz Illumina HiSeq 2000 /files/ENCFF330MJC/ released s3://encode-public/2016/03/14/bed81585-021b-4da6-bf6a-a31a8e419808/ENCFF728HNA.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF243GPO bam bam alignments hg19 ENCSR672RME Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1573'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7728/'], '@type': ['Target', 'Item'], 'name': 'ZNF175-human', 'label': 'ZNF175', '@id': '/targets/ZNF175-human/', 'title': 'ZNF175 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '91a63da3-3f5f-4589-a592-a2262d02cf11', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF728HNA/ 778286451 ENCODE Processing Pipeline 0f35ff4bc03d4bb48ecfa2ad11e3bb36 https://www.encodeproject.org/files/ENCFF243GPO/@@download/ENCFF243GPO.bam released s3://encode-public/2016/04/23/8d0289ca-67f3-4d46-a24f-637dde83f27d/ENCFF243GPO.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF796GJW bam bam unfiltered alignments GRCh38 ENCSR672RME Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1573'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7728/'], '@type': ['Target', 'Item'], 'name': 'ZNF175-human', 'label': 'ZNF175', '@id': '/targets/ZNF175-human/', 'title': 'ZNF175 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '91a63da3-3f5f-4589-a592-a2262d02cf11', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF728HNA/ 987374544 ENCODE Processing Pipeline 46b4d60dbf847766ae8af983d28e8130 https://www.encodeproject.org/files/ENCFF796GJW/@@download/ENCFF796GJW.bam released s3://encode-public/2016/05/06/f8ff6230-c86e-49a0-ac28-af91e0f29541/ENCFF796GJW.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF156EWJ bam bam alignments GRCh38 ENCSR672RME Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1573'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7728/'], '@type': ['Target', 'Item'], 'name': 'ZNF175-human', 'label': 'ZNF175', '@id': '/targets/ZNF175-human/', 'title': 'ZNF175 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '91a63da3-3f5f-4589-a592-a2262d02cf11', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF728HNA/ 777836739 ENCODE Processing Pipeline 2e1763f53b32c1b9965b921953abaa89 https://www.encodeproject.org/files/ENCFF156EWJ/@@download/ENCFF156EWJ.bam released s3://encode-public/2016/05/06/e7a956a4-67c9-43df-ab8d-3765118b61c2/ENCFF156EWJ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF932VPA bam bam unfiltered alignments GRCh38 ENCSR672RME Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1573'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7728/'], '@type': ['Target', 'Item'], 'name': 'ZNF175-human', 'label': 'ZNF175', '@id': '/targets/ZNF175-human/', 'title': 'ZNF175 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '91a63da3-3f5f-4589-a592-a2262d02cf11', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF728HNA/, /files/ENCFF110MCL/ 985059319 ENCODE Processing Pipeline 6f8f7871f4e5f99ec1f091316627d425 https://www.encodeproject.org/files/ENCFF932VPA/@@download/ENCFF932VPA.bam released s3://encode-public/2020/10/27/ff172d6c-190a-4812-99bf-9cb08929e2d3/ENCFF932VPA.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF569LOQ bam bam alignments GRCh38 ENCSR672RME Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1573'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7728/'], '@type': ['Target', 'Item'], 'name': 'ZNF175-human', 'label': 'ZNF175', '@id': '/targets/ZNF175-human/', 'title': 'ZNF175 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '91a63da3-3f5f-4589-a592-a2262d02cf11', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF728HNA/, /files/ENCFF110MCL/ 825116843 ENCODE Processing Pipeline 4399c5dc95bd0f2893880e8aeb1d3c00 https://www.encodeproject.org/files/ENCFF569LOQ/@@download/ENCFF569LOQ.bam released s3://encode-public/2020/10/27/9d975e6b-68d0-4bcf-9403-7f687d4048d1/ENCFF569LOQ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF437JQF tagAlign tagAlign alignments hg19 ENCSR831HVP Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001873 caudate nucleus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/SRR1270495/, /files/SRR1270463/, /files/SRR1270456/ 181964358 Anshul Kundaje, Stanford eec8c6601cc9418561b2236455a24322 https://www.encodeproject.org/files/ENCFF437JQF/@@download/ENCFF437JQF.tagAlign.gz archived s3://encode-public/2016/03/30/e349b2ed-b843-49a4-af6d-66c0d00f7fb7/ENCFF437JQF.tagAlign.gz Lab custom hg19 archived low read length ENCFF057ZIZ bam bam redacted alignments GRCh38 ENCSR831HVP Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001873 caudate nucleus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF359TKK/, /files/ENCFF856MUA/, /files/ENCFF643CGH/, /files/ENCFF971GQK/ 190752897 ENCODE Processing Pipeline 778c33c56a4d3f17aaa495bf7d4875dc https://www.encodeproject.org/files/ENCFF057ZIZ/@@download/ENCFF057ZIZ.bam released s3://encode-public/2017/10/16/9c9e2ccb-2545-4eaf-a158-711db861aeb1/ENCFF057ZIZ.bam ENCODE3 GRCh38 archived low read length ENCFF202LMT bam bam redacted unfiltered alignments GRCh38 ENCSR831HVP Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001873 caudate nucleus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF359TKK/, /files/ENCFF856MUA/, /files/ENCFF643CGH/, /files/ENCFF971GQK/ 347640852 ENCODE Processing Pipeline 244357cdcc25b7849d3f4df4764911b0 https://www.encodeproject.org/files/ENCFF202LMT/@@download/ENCFF202LMT.bam released s3://encode-public/2017/10/16/aebf268a-ed2f-493c-a75a-8f69fe86bcc9/ENCFF202LMT.bam ENCODE3 GRCh38 archived low read length ENCFF523TPJ bam bam redacted alignments hg19 ENCSR831HVP Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001873 caudate nucleus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF359TKK/, /files/ENCFF856MUA/, /files/ENCFF971GQK/ 162576268 ENCODE Processing Pipeline 6a0aaa3a1b85b609bd81ed504719db3a https://www.encodeproject.org/files/ENCFF523TPJ/@@download/ENCFF523TPJ.bam released s3://encode-public/2018/01/20/48ed1bc4-12c5-4e3e-9e08-447d8648eaf2/ENCFF523TPJ.bam ENCODE3 hg19 archived low read length ENCFF417WYY bam bam redacted unfiltered alignments hg19 ENCSR831HVP Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001873 caudate nucleus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF807MUK/, /files/ENCFF359TKK/, /files/ENCFF856MUA/, /files/ENCFF971GQK/ 240291115 ENCODE Processing Pipeline 11860bff234769a4429f028f61b0a089 https://www.encodeproject.org/files/ENCFF417WYY/@@download/ENCFF417WYY.bam released s3://encode-public/2018/01/20/916206a1-7b4c-4ccb-99f6-5814c5cf7697/ENCFF417WYY.bam ENCODE3 hg19 archived low read length ENCFF222ZBO bam bam redacted alignments GRCh38 ENCSR831HVP Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0001873 caudate nucleus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF110MCL/, /files/ENCFF132HFE/, /files/ENCFF883XJH/, /files/ENCFF376QTS/ 1039109984 ENCODE Processing Pipeline 33ba9b296de92ce6db851624039d0a6d https://www.encodeproject.org/files/ENCFF222ZBO/@@download/ENCFF222ZBO.bam released s3://encode-public/2021/01/28/f17a59f0-d182-4eac-b2ff-593d7bc73f11/ENCFF222ZBO.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF043CYN fastq fastq reads ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1042489038 Zhiping Weng, UMass 5d2bebb49ddf60508cc9ba1c8c9f57e8 SRA:SRR518306 https://www.encodeproject.org/files/ENCFF043CYN/@@download/ENCFF043CYN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/e327a513-935c-40a1-b4f8-7405084db1ef/ENCFF043CYN.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF442OHT bam bam unfiltered alignments hg19 ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF043CYN/, /files/ENCFF807MUK/ 1166315879 ENCODE Processing Pipeline e7639dbc803204fe49809d9e9d3bd057 https://www.encodeproject.org/files/ENCFF442OHT/@@download/ENCFF442OHT.bam released s3://encode-public/2016/12/19/e452d17c-9cb2-4212-bc43-05b581f8e8a9/ENCFF442OHT.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF278OEO bam bam alignments hg19 ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF043CYN/, /files/ENCFF807MUK/ 556055531 ENCODE Processing Pipeline 627fd091de5dd6fc8af099dc149adedc https://www.encodeproject.org/files/ENCFF278OEO/@@download/ENCFF278OEO.bam released s3://encode-public/2016/12/19/07743881-7198-4e90-bc74-2ee749308f0f/ENCFF278OEO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF309RDH bam bam unfiltered alignments GRCh38 ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF043CYN/, /files/ENCFF643CGH/ 1171562855 ENCODE Processing Pipeline 809258012c7d21625527ab978deaec40 https://www.encodeproject.org/files/ENCFF309RDH/@@download/ENCFF309RDH.bam released s3://encode-public/2016/12/19/ab731e2c-5483-43d3-b779-360d8c38241b/ENCFF309RDH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF870RGK bam bam alignments GRCh38 ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF043CYN/, /files/ENCFF643CGH/ 555800402 ENCODE Processing Pipeline f82294039b6bae0cc586f01619506085 https://www.encodeproject.org/files/ENCFF870RGK/@@download/ENCFF870RGK.bam released s3://encode-public/2016/12/19/83c187d9-4d0c-4669-b4c6-58545cc48f3b/ENCFF870RGK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF960PXL tagAlign tagAlign alignments hg19 ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF043CYN/ 96026713 Anshul Kundaje, Stanford 3c9b5eb05ef6df6129ecf6b683041eb2 https://www.encodeproject.org/files/ENCFF960PXL/@@download/ENCFF960PXL.tagAlign.gz archived s3://encode-public/2016/02/11/9e601bea-5f1e-4659-8e94-29a674127b17/ENCFF960PXL.tagAlign.gz mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF313YDW bam bam alignments GRCh38 ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF043CYN/ 603298753 ENCODE Processing Pipeline 5e39697a629bef63e66db7be2dc9636f https://www.encodeproject.org/files/ENCFF313YDW/@@download/ENCFF313YDW.bam released s3://encode-public/2020/08/06/fd0e7a0e-5611-4fcd-ba91-d3fb9468f41d/ENCFF313YDW.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF378JBZ bam bam unfiltered alignments GRCh38 ENCSR687ZYY Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002370 thymus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF043CYN/ 1142180358 ENCODE Processing Pipeline f911a551149615b594c53f3c14239cdc https://www.encodeproject.org/files/ENCFF378JBZ/@@download/ENCFF378JBZ.bam released s3://encode-public/2020/08/06/02bf1a91-acb4-4156-9979-18782a624b42/ENCFF378JBZ.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, low read length ENCFF580KUB bam bam unfiltered alignments hg19 ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF182AZA/, /files/ENCFF623AGS/, /files/ENCFF807MUK/ 1283766549 ENCODE Processing Pipeline 6b78f7223dcdc3da9564766aeebc60d4 https://www.encodeproject.org/files/ENCFF580KUB/@@download/ENCFF580KUB.bam released s3://encode-public/2018/02/21/b4d333d5-e1f6-495d-bc61-3fc544e911d6/ENCFF580KUB.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF623AGS fastq fastq reads ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 403025618 Kevin White, UChicago 931646e70d11c6380cc89ffdbb3470a7 SRA:SRR14103215 https://www.encodeproject.org/files/ENCFF623AGS/@@download/ENCFF623AGS.fastq.gz Illumina HiSeq 2500 /files/ENCFF256EJW/ released s3://encode-public/2016/03/14/c39e920f-0e42-41ae-b42b-c05c71dcaae8/ENCFF623AGS.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF182AZA fastq fastq reads ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 746344129 Kevin White, UChicago a6b0b0c0c3a2775923c040b75d1962c5 SRA:SRR14103216 https://www.encodeproject.org/files/ENCFF182AZA/@@download/ENCFF182AZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF067NSO/, /files/ENCFF679NOJ/ released s3://encode-public/2016/03/22/aebdb427-b464-491f-b4aa-8da70e032329/ENCFF182AZA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF376MGE bam bam alignments hg19 ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF182AZA/, /files/ENCFF623AGS/, /files/ENCFF807MUK/ 1019124321 ENCODE Processing Pipeline ca02b1315af3bae0d34cf9d8f9119aaf https://www.encodeproject.org/files/ENCFF376MGE/@@download/ENCFF376MGE.bam released s3://encode-public/2016/04/23/4639b5ab-cfc8-49ad-b2f0-7b8b950e983e/ENCFF376MGE.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF777XVN bam bam unfiltered alignments GRCh38 ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF182AZA/, /files/ENCFF623AGS/, /files/ENCFF643CGH/ 1287603076 ENCODE Processing Pipeline c170f03000df4586892bcf69663d4c3c https://www.encodeproject.org/files/ENCFF777XVN/@@download/ENCFF777XVN.bam released s3://encode-public/2016/05/06/7fc169d9-6d18-48a5-87d0-0dd73b698d1d/ENCFF777XVN.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF067XXK bam bam alignments GRCh38 ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF182AZA/, /files/ENCFF623AGS/, /files/ENCFF643CGH/ 1018576092 ENCODE Processing Pipeline 1587bbfd7c95d11a96e78e42a0e89f37 https://www.encodeproject.org/files/ENCFF067XXK/@@download/ENCFF067XXK.bam released s3://encode-public/2016/05/06/6fa27f23-4c54-4c1f-ab9c-d4f120a167b8/ENCFF067XXK.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF220MFF bam bam alignments GRCh38 ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF623AGS/, /files/ENCFF182AZA/ 1065643546 ENCODE Processing Pipeline 5e41bfb94d03424aa2b1147d2960b6d1 https://www.encodeproject.org/files/ENCFF220MFF/@@download/ENCFF220MFF.bam released s3://encode-public/2020/10/27/b5a0e2d5-a55e-4b37-8b4c-28234312ca62/ENCFF220MFF.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF828QTY bam bam unfiltered alignments GRCh38 ENCSR418YQO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:E2F4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1874/'], '@type': ['Target', 'Item'], 'label': 'E2F4', 'title': 'E2F4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9ce9bc82-0a83-4234-adcc-d582f01c23bf', 'schema_version': '14', 'name': 'E2F4-human', '@id': '/targets/E2F4-human/', 'status': 'released'} hg19 16 67065276 67301565 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF623AGS/, /files/ENCFF182AZA/ 1289359566 ENCODE Processing Pipeline 03384478a094dc2b123c855a57615226 https://www.encodeproject.org/files/ENCFF828QTY/@@download/ENCFF828QTY.bam released s3://encode-public/2020/10/27/0f87cf99-37a4-49bb-8197-f5a5583a7b1f/ENCFF828QTY.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF395GOL tagAlign tagAlign alignments hg19 ENCSR236NLU Control ChIP-seq /human-donors/ENCDO776UMN/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF882MTE/ 196452685 Anshul Kundaje, Stanford cd4eaccaf95468745f11a2f46b4ea8cd https://www.encodeproject.org/files/ENCFF395GOL/@@download/ENCFF395GOL.tagAlign.gz archived s3://encode-public/2016/03/30/fd7c3b13-81ce-4204-a7c8-97c630d32d0e/ENCFF395GOL.tagAlign.gz Lab custom hg19 archived low read length ENCFF573APN bam bam redacted unfiltered alignments GRCh38 ENCSR236NLU Control ChIP-seq /human-donors/ENCDO776UMN/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF882MTE/ 584783524 ENCODE Processing Pipeline a4156a85e5e42049f11a4b9771e8f6e6 https://www.encodeproject.org/files/ENCFF573APN/@@download/ENCFF573APN.bam released s3://encode-public/2018/01/18/fabd6935-d9eb-49a8-96d8-7c047aaf0884/ENCFF573APN.bam ENCODE3 GRCh38 archived low read length ENCFF955NVU bam bam redacted alignments GRCh38 ENCSR236NLU Control ChIP-seq /human-donors/ENCDO776UMN/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF882MTE/ 376001380 ENCODE Processing Pipeline c0ac00581bab5258a42b0caeb44a1636 https://www.encodeproject.org/files/ENCFF955NVU/@@download/ENCFF955NVU.bam released s3://encode-public/2018/01/18/89b80b3e-4088-45c0-8a90-3913c610c1fd/ENCFF955NVU.bam ENCODE3 GRCh38 archived low read length ENCFF094CTI bam bam redacted unfiltered alignments hg19 ENCSR236NLU Control ChIP-seq /human-donors/ENCDO776UMN/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF882MTE/ 579492762 ENCODE Processing Pipeline b4b1b01e58ed5779ece6bbb3ab40a897 https://www.encodeproject.org/files/ENCFF094CTI/@@download/ENCFF094CTI.bam released s3://encode-public/2018/01/19/17f088fa-c592-4f0d-af19-86fe13413555/ENCFF094CTI.bam ENCODE3 hg19 archived low read length ENCFF353GXA bam bam redacted alignments hg19 ENCSR236NLU Control ChIP-seq /human-donors/ENCDO776UMN/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF882MTE/ 376083804 ENCODE Processing Pipeline 2362099af19a735f6842132462b9feb1 https://www.encodeproject.org/files/ENCFF353GXA/@@download/ENCFF353GXA.bam released s3://encode-public/2018/01/19/42a1d0e1-00f2-408a-899f-88c757999218/ENCFF353GXA.bam ENCODE3 hg19 archived low read length ENCFF904MUE bam bam redacted alignments GRCh38 ENCSR236NLU Control ChIP-seq /human-donors/ENCDO776UMN/ UBERON:0002107 liver tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF882MTE/, /files/ENCFF110MCL/ 1178781648 ENCODE Processing Pipeline c0eb7413037f42fb90773bfe3be3e060 https://www.encodeproject.org/files/ENCFF904MUE/@@download/ENCFF904MUE.bam released s3://encode-public/2021/01/27/3ff1e4b3-1f6a-4a6c-8bc0-88db6fddc1bb/ENCFF904MUE.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF332ADP bam bam unfiltered alignments hg19 ENCSR911VTL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84146/'], '@type': ['Target', 'Item'], 'name': 'ZNF644-human', 'label': 'ZNF644', '@id': '/targets/ZNF644-human/', 'title': 'ZNF644 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dcfc4a4f-ad65-4341-84c0-dd25400f4ba7', 'status': 'released'} hg19 1 91368634 91583092 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF656LJN/ 2412667753 ENCODE Processing Pipeline a911b072f2e9847f18dd53c7fa1c2cf1 https://www.encodeproject.org/files/ENCFF332ADP/@@download/ENCFF332ADP.bam released s3://encode-public/2018/02/22/2bac4868-6219-48ad-9d79-35e490864323/ENCFF332ADP.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF656LJN fastq fastq reads ENCSR911VTL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84146/'], '@type': ['Target', 'Item'], 'name': 'ZNF644-human', 'label': 'ZNF644', '@id': '/targets/ZNF644-human/', 'title': 'ZNF644 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dcfc4a4f-ad65-4341-84c0-dd25400f4ba7', 'status': 'released'} hg19 1 91368634 91583092 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2321902917 Kevin White, UChicago 50c267fd4225af4c0c8db730bec8db46 SRA:SRR6213956 https://www.encodeproject.org/files/ENCFF656LJN/@@download/ENCFF656LJN.fastq.gz Illumina HiSeq 2500 /files/ENCFF278ATS/ released s3://encode-public/2016/03/14/9ae398c3-cab7-4e9b-ae4f-845887be6ff0/ENCFF656LJN.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF479IHH bam bam alignments hg19 ENCSR911VTL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84146/'], '@type': ['Target', 'Item'], 'name': 'ZNF644-human', 'label': 'ZNF644', '@id': '/targets/ZNF644-human/', 'title': 'ZNF644 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dcfc4a4f-ad65-4341-84c0-dd25400f4ba7', 'status': 'released'} hg19 1 91368634 91583092 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF807MUK/, /files/ENCFF656LJN/ 1884641931 ENCODE Processing Pipeline d73061b13410bc8b1daefebf925aff1c https://www.encodeproject.org/files/ENCFF479IHH/@@download/ENCFF479IHH.bam released s3://encode-public/2016/04/23/9ec1782b-62be-4690-86c7-73087d1835d8/ENCFF479IHH.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF836DZG bam bam unfiltered alignments GRCh38 ENCSR911VTL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84146/'], '@type': ['Target', 'Item'], 'name': 'ZNF644-human', 'label': 'ZNF644', '@id': '/targets/ZNF644-human/', 'title': 'ZNF644 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dcfc4a4f-ad65-4341-84c0-dd25400f4ba7', 'status': 'released'} hg19 1 91368634 91583092 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF656LJN/ 2422265114 ENCODE Processing Pipeline c3fcb85eb8d18c71de12fd7fa8060e46 https://www.encodeproject.org/files/ENCFF836DZG/@@download/ENCFF836DZG.bam released s3://encode-public/2016/05/06/e179db69-7bf3-400e-8f2c-0ecc1d7f0dd4/ENCFF836DZG.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF493VPN bam bam alignments GRCh38 ENCSR911VTL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84146/'], '@type': ['Target', 'Item'], 'name': 'ZNF644-human', 'label': 'ZNF644', '@id': '/targets/ZNF644-human/', 'title': 'ZNF644 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dcfc4a4f-ad65-4341-84c0-dd25400f4ba7', 'status': 'released'} hg19 1 91368634 91583092 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF643CGH/, /files/ENCFF656LJN/ 1884152050 ENCODE Processing Pipeline 98354cc217dd742c6af10dc2abf4c1f6 https://www.encodeproject.org/files/ENCFF493VPN/@@download/ENCFF493VPN.bam released s3://encode-public/2016/05/06/eafc6a07-036a-4a53-9c76-fa3a84d8f080/ENCFF493VPN.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF183YOH bam bam unfiltered alignments GRCh38 ENCSR911VTL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84146/'], '@type': ['Target', 'Item'], 'name': 'ZNF644-human', 'label': 'ZNF644', '@id': '/targets/ZNF644-human/', 'title': 'ZNF644 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dcfc4a4f-ad65-4341-84c0-dd25400f4ba7', 'status': 'released'} hg19 1 91368634 91583092 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF656LJN/, /files/ENCFF110MCL/ 2362932922 ENCODE Processing Pipeline 5bfc361f580427b66cf5f74df54528bc https://www.encodeproject.org/files/ENCFF183YOH/@@download/ENCFF183YOH.bam released s3://encode-public/2020/10/27/707a9331-cab1-4a8e-a68e-2ab243db29d3/ENCFF183YOH.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF726WVH bam bam alignments GRCh38 ENCSR911VTL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84146/'], '@type': ['Target', 'Item'], 'name': 'ZNF644-human', 'label': 'ZNF644', '@id': '/targets/ZNF644-human/', 'title': 'ZNF644 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'dcfc4a4f-ad65-4341-84c0-dd25400f4ba7', 'status': 'released'} hg19 1 91368634 91583092 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF656LJN/, /files/ENCFF110MCL/ 1932387007 ENCODE Processing Pipeline 71ec772a495da800fe1fc6466498aa2c https://www.encodeproject.org/files/ENCFF726WVH/@@download/ENCFF726WVH.bam released s3://encode-public/2020/10/27/5072f19b-4b4f-4b74-a76f-196fd582616c/ENCFF726WVH.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF858WTP fastq fastq reads ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 1348649447 Zhiping Weng, UMass 0e6841ce88008299494225eeb8688919 SRA:SRR578717 https://www.encodeproject.org/files/ENCFF858WTP/@@download/ENCFF858WTP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/02b2fcb6-f65b-4ccc-9291-5cd6740b62d9/ENCFF858WTP.fastq.gz mild to moderate bottlenecking, low read depth ENCFF829ZIC bam bam unfiltered alignments GRCh38 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF858WTP/, /files/ENCFF643CGH/ 1276803752 ENCODE Processing Pipeline e513cc6fe21c54997e77f967af5247e9 https://www.encodeproject.org/files/ENCFF829ZIC/@@download/ENCFF829ZIC.bam released s3://encode-public/2017/05/10/ea262c57-5f2a-4d53-b519-28c75c27affc/ENCFF829ZIC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF941BBF bam bam alignments GRCh38 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF858WTP/, /files/ENCFF643CGH/ 766787465 ENCODE Processing Pipeline b6320ed3e12b7f5326f92c01c244030c https://www.encodeproject.org/files/ENCFF941BBF/@@download/ENCFF941BBF.bam released s3://encode-public/2017/05/10/d4655050-33b8-4b3b-8c96-b27094c71a1c/ENCFF941BBF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF020KEE bam bam unfiltered alignments hg19 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF858WTP/, /files/ENCFF807MUK/ 1270483006 ENCODE Processing Pipeline a906ff6a2d77c509f265c07873e20adb https://www.encodeproject.org/files/ENCFF020KEE/@@download/ENCFF020KEE.bam released s3://encode-public/2017/05/10/a4135ad2-e39f-400b-8102-09eb6cf56633/ENCFF020KEE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF540CLI bam bam alignments hg19 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF858WTP/, /files/ENCFF807MUK/ 767089713 ENCODE Processing Pipeline 3fed2e8f1c654ea250ddab596744f7d1 https://www.encodeproject.org/files/ENCFF540CLI/@@download/ENCFF540CLI.bam released s3://encode-public/2017/05/10/ab62c102-00f7-4be3-aca5-4c249f6bd732/ENCFF540CLI.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF180SIM bam bam unfiltered alignments GRCh38 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF858WTP/, /files/ENCFF110MCL/ 1527901662 ENCODE Processing Pipeline 904a09b3ee834aaf372b7f13aa706a3f https://www.encodeproject.org/files/ENCFF180SIM/@@download/ENCFF180SIM.bam released s3://encode-public/2020/08/06/82c45b90-a618-48d7-9bed-aede0f087a7e/ENCFF180SIM.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF693RMB bam bam alignments GRCh38 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF858WTP/, /files/ENCFF110MCL/ 1067874008 ENCODE Processing Pipeline 8a7bc0add296b633479147f7bf0c6f02 https://www.encodeproject.org/files/ENCFF693RMB/@@download/ENCFF693RMB.bam released s3://encode-public/2020/08/06/fc7839d0-93ab-49f8-837c-efdc1ce2097d/ENCFF693RMB.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF031YUZ bam bam unfiltered alignments GRCh38 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF858WTP/ 1245431871 ENCODE Processing Pipeline 44a6dc574e006b5d181f97e7b13bcf54 https://www.encodeproject.org/files/ENCFF031YUZ/@@download/ENCFF031YUZ.bam released s3://encode-public/2020/08/13/e17e7638-c4c6-4c5a-89e1-bf54dda5a31a/ENCFF031YUZ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF171TVC bam bam alignments GRCh38 ENCSR563OLJ Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF858WTP/ 839154930 ENCODE Processing Pipeline 6b7e295226dde47a30d3b455748a1109 https://www.encodeproject.org/files/ENCFF171TVC/@@download/ENCFF171TVC.bam released s3://encode-public/2020/08/13/d3844d8f-c24a-4b4e-9076-91771766eb1e/ENCFF171TVC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF762YYJ fastq fastq reads ENCSR841CWN Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 4892628960 Roderic Guigo, CRG df57af5105aa0a033cabb76740cf0704 https://www.encodeproject.org/files/ENCFF762YYJ/@@download/ENCFF762YYJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/dccade2b-a7fb-483e-848c-a05a18cda244/ENCFF762YYJ.fastq.gz ENCFF170GMW fastq fastq reads ENCSR841CWN Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 3817345680 Roderic Guigo, CRG d3f162b6d26bf085bd3c8059099f4f55 https://www.encodeproject.org/files/ENCFF170GMW/@@download/ENCFF170GMW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/b81e40c2-cf41-4c2e-bb21-7ab0fe657ee9/ENCFF170GMW.fastq.gz ENCFF231XNQ bam bam alignments GRCh38 ENCSR841CWN Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF170GMW/ 4175390154 Roderic Guigo, CRG 96e0677d302918dd758075ad79223d5b https://www.encodeproject.org/files/ENCFF231XNQ/@@download/ENCFF231XNQ.bam released s3://encode-public/2022/01/27/ec1163da-328c-438a-a994-58b622eb96fd/ENCFF231XNQ.bam Lab custom GRCh38 released ENCFF547KQF bam bam alignments GRCh38 ENCSR841CWN Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF762YYJ/ 4812037369 Roderic Guigo, CRG cd353cfaa393616f0ec663df93443e63 https://www.encodeproject.org/files/ENCFF547KQF/@@download/ENCFF547KQF.bam released s3://encode-public/2022/01/27/de1c5b0b-f83d-464f-87a7-e94c1f81e96e/ENCFF547KQF.bam Lab custom GRCh38 released ENCFF491WAR tagAlign tagAlign alignments hg19 ENCSR995BPJ Control ChIP-seq /human-donors/ENCDO896AXO/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF088KPY/ 257660555 Anshul Kundaje, Stanford 8f6d92e5ffbacaafbd0c6712c02bdfa4 https://www.encodeproject.org/files/ENCFF491WAR/@@download/ENCFF491WAR.tagAlign.gz archived s3://encode-public/2016/03/30/c0f3b9b1-41a4-4b18-8221-6f978ddd84b9/ENCFF491WAR.tagAlign.gz Lab custom hg19 archived low read length ENCFF967WMX tagAlign tagAlign alignments hg19 ENCSR995BPJ Control ChIP-seq UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 204493930 Anshul Kundaje, Stanford bcce3d07ae2d52b46e2b59f3046cd464 https://www.encodeproject.org/files/ENCFF967WMX/@@download/ENCFF967WMX.tagAlign.gz archived s3://encode-public/2016/02/11/58ed97ae-1c8b-4fe8-a90c-f41dddb14943/ENCFF967WMX.tagAlign.gz Lab custom hg19 archived low read length ENCFF483KAN bam bam redacted unfiltered alignments GRCh38 ENCSR995BPJ Control ChIP-seq /human-donors/ENCDO896AXO/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF088KPY/ 743599363 ENCODE Processing Pipeline f37992907f82053587fb581cd482311d https://www.encodeproject.org/files/ENCFF483KAN/@@download/ENCFF483KAN.bam released s3://encode-public/2018/01/19/2793d20b-3328-4a79-8ed4-a523860964bf/ENCFF483KAN.bam ENCODE3 GRCh38 archived low read length ENCFF401AUV bam bam redacted alignments GRCh38 ENCSR995BPJ Control ChIP-seq /human-donors/ENCDO896AXO/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF088KPY/ 506880830 ENCODE Processing Pipeline 533496a09a86964cf7f2c2e08d9f1a6d https://www.encodeproject.org/files/ENCFF401AUV/@@download/ENCFF401AUV.bam released s3://encode-public/2018/01/19/b0527969-5439-4fd4-ba7a-22c7d8dd85d4/ENCFF401AUV.bam ENCODE3 GRCh38 archived low read length ENCFF457HXH bam bam redacted unfiltered alignments hg19 ENCSR995BPJ Control ChIP-seq /human-donors/ENCDO896AXO/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF088KPY/ 737086725 ENCODE Processing Pipeline cac7a88bd1ed14cf132357d9131c0174 https://www.encodeproject.org/files/ENCFF457HXH/@@download/ENCFF457HXH.bam released s3://encode-public/2018/01/19/6875402b-76dc-47d1-978b-c1e6999c3b3f/ENCFF457HXH.bam ENCODE3 hg19 archived low read length ENCFF165QXZ bam bam redacted alignments hg19 ENCSR995BPJ Control ChIP-seq /human-donors/ENCDO896AXO/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF088KPY/ 506909626 ENCODE Processing Pipeline 0027cc4b058797fc1687976e16dcb79a https://www.encodeproject.org/files/ENCFF165QXZ/@@download/ENCFF165QXZ.bam released s3://encode-public/2018/01/19/5f3adbef-f5cd-4513-a233-7ace66f6f792/ENCFF165QXZ.bam ENCODE3 hg19 archived low read length ENCFF141HNE bam bam redacted alignments GRCh38 ENCSR995BPJ Control ChIP-seq /human-donors/ENCDO896AXO/ UBERON:0003346 mucosa of rectum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF088KPY/, /files/ENCFF110MCL/ 1689506654 ENCODE Processing Pipeline e13fb842f47931c67c8e52dd71c9f146 https://www.encodeproject.org/files/ENCFF141HNE/@@download/ENCFF141HNE.bam released s3://encode-public/2021/01/27/a5aab6ae-e235-490d-a8f9-a20cf6d3a54f/ENCFF141HNE.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF005UFN fastq fastq reads ENCSR255SDP Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 5894109336 Roderic Guigo, CRG 048e1fbe610afd1cda1b3bcddb52e348 https://www.encodeproject.org/files/ENCFF005UFN/@@download/ENCFF005UFN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/74bcdb34-4fc9-4279-9589-23ea7acdd02f/ENCFF005UFN.fastq.gz ENCFF577HSJ fastq fastq reads ENCSR255SDP Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4762472249 Roderic Guigo, CRG 9c1fc134f6d7907309f04ed2bcf395fa https://www.encodeproject.org/files/ENCFF577HSJ/@@download/ENCFF577HSJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/92e150d3-0b61-4fe3-a079-29341914ee2f/ENCFF577HSJ.fastq.gz ENCFF919XCV bam bam alignments GRCh38 ENCSR255SDP Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF577HSJ/ 5118276813 Roderic Guigo, CRG a24f4bc995050f64006be138766125fc https://www.encodeproject.org/files/ENCFF919XCV/@@download/ENCFF919XCV.bam released s3://encode-public/2022/01/27/41962664-aea2-4e44-9292-7c00c70c8eee/ENCFF919XCV.bam Lab custom GRCh38 released ENCFF110SOB bam bam alignments GRCh38 ENCSR255SDP Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF005UFN/ 5619161026 Roderic Guigo, CRG 7c1c6ce99a57ddc9d982b05aad0cef9a https://www.encodeproject.org/files/ENCFF110SOB/@@download/ENCFF110SOB.bam released s3://encode-public/2022/01/27/7fccce26-1fba-448f-8932-7fb64cce11b5/ENCFF110SOB.bam Lab custom GRCh38 released ENCFF625BWA bam bam unfiltered alignments hg19 ENCSR633UAP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF147CMT/ 1028797155 ENCODE Processing Pipeline 5ea084a8633143f5afcd26be927bcf0d https://www.encodeproject.org/files/ENCFF625BWA/@@download/ENCFF625BWA.bam released s3://encode-public/2018/02/22/6c366bb1-3e9d-4270-b793-c7d033152983/ENCFF625BWA.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF147CMT fastq fastq reads ENCSR633UAP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 921448012 Richard Myers, HAIB bb2981c69bc6251f46c12bc58fdf965c SRA:SRR5339062 https://www.encodeproject.org/files/ENCFF147CMT/@@download/ENCFF147CMT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/d8642bd8-545b-41f9-9bc5-036e0a18ceed/ENCFF147CMT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF404AVI bam bam unfiltered alignments GRCh38 ENCSR633UAP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF147CMT/ 1032154851 ENCODE Processing Pipeline 6c310cfd174072a2bd71c6dfc230e55a https://www.encodeproject.org/files/ENCFF404AVI/@@download/ENCFF404AVI.bam released s3://encode-public/2016/05/06/3c57c855-5463-4907-8079-5f1b50b7d283/ENCFF404AVI.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF619EAZ bam bam alignments GRCh38 ENCSR633UAP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF147CMT/ 789623143 ENCODE Processing Pipeline 4724c5c8f9693c817e7d4780189f68a5 https://www.encodeproject.org/files/ENCFF619EAZ/@@download/ENCFF619EAZ.bam released s3://encode-public/2016/05/06/ec3c2d28-ac89-438c-93d7-3f1163b06c4c/ENCFF619EAZ.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF708TFQ bam bam alignments hg19 ENCSR633UAP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF147CMT/ 789667395 ENCODE Processing Pipeline d80b5dc6e57ca6058cb8ffb11e50c102 https://www.encodeproject.org/files/ENCFF708TFQ/@@download/ENCFF708TFQ.bam released s3://encode-public/2016/05/07/3b05bec3-3a23-4fc0-b284-ed7a5b0d72b6/ENCFF708TFQ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF032VOB bam bam unfiltered alignments GRCh38 ENCSR633UAP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF147CMT/, /files/ENCFF110MCL/ 1024662408 ENCODE Processing Pipeline a52cdcd725c478be11be53577f5f53c1 https://www.encodeproject.org/files/ENCFF032VOB/@@download/ENCFF032VOB.bam released s3://encode-public/2020/10/27/a8d695ff-8afc-4594-b314-e8b21524c7e3/ENCFF032VOB.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF681CJW bam bam alignments GRCh38 ENCSR633UAP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF147CMT/, /files/ENCFF110MCL/ 820116153 ENCODE Processing Pipeline 359e18e7b6faa278d2a46c585e6a78e0 https://www.encodeproject.org/files/ENCFF681CJW/@@download/ENCFF681CJW.bam released s3://encode-public/2020/10/27/80849c96-ce61-4342-9a3d-b12beaaf05e7/ENCFF681CJW.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF753PMD fastq fastq reads ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 83013143 Michael Snyder, Stanford f1edf677e108dc32e7401329e21eb01c https://www.encodeproject.org/files/ENCFF753PMD/@@download/ENCFF753PMD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4a1b10fd-abf5-4e1c-9b81-0441a623898b/ENCFF753PMD.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF845FXH fastq fastq reads ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 47245393 Michael Snyder, Stanford 807b8d8ee92046054549e38e364a5c12 https://www.encodeproject.org/files/ENCFF845FXH/@@download/ENCFF845FXH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/93aa96e4-272b-484d-b71a-f8da0221b67d/ENCFF845FXH.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF029YQL fastq fastq reads ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 24961035 Michael Snyder, Stanford 2aede405f2f8782bf9ae0be508f76fbe https://www.encodeproject.org/files/ENCFF029YQL/@@download/ENCFF029YQL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c29b937f-c6c4-4fad-b783-18d4248db13b/ENCFF029YQL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF215SPC bam bam alignments ce10 ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF753PMD/, /files/ENCFF029YQL/, /files/ENCFF845FXH/, /files/ENCFF987UMF/ 208678900 Kevin White, UChicago 43863534ffdbcb4c9571e064b3432ec3 https://www.encodeproject.org/files/ENCFF215SPC/@@download/ENCFF215SPC.bam released s3://encode-public/2016/10/18/6a757f1d-3368-4a93-9d23-cecbc4eb1b0f/ENCFF215SPC.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF629ZYE bam bam alignments ce11 ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF753PMD/, /files/ENCFF029YQL/, /files/ENCFF845FXH/, /files/ENCFF586MOL/ 208916203 Kevin White, UChicago 38826cee7a019227e0800ccb89df6da6 https://www.encodeproject.org/files/ENCFF629ZYE/@@download/ENCFF629ZYE.bam released s3://encode-public/2016/10/18/1028d6e3-49ef-487f-adb1-0b1ef3a15024/ENCFF629ZYE.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF723NUL bigWig bigWig read-depth normalized signal ce10 ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF215SPC/ 10000710 Kevin White, UChicago 836eaee5fab2a1491d02924c97b3f245 https://www.encodeproject.org/files/ENCFF723NUL/@@download/ENCFF723NUL.bigWig released s3://encode-public/2016/10/20/89ea70f2-f1d6-4fa8-959f-8e236a1041f9/ENCFF723NUL.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF284XYE bigWig bigWig signal of unique reads ce10 ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF215SPC/ 9977518 Kevin White, UChicago f31a19d551c76ca5ac1734b79086172f https://www.encodeproject.org/files/ENCFF284XYE/@@download/ENCFF284XYE.bigWig released s3://encode-public/2016/10/20/0f4821f0-5cf2-4031-8012-33bf34cf0fae/ENCFF284XYE.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF158TTG bigWig bigWig read-depth normalized signal ce11 ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF629ZYE/ 9995294 Kevin White, UChicago f04e8856f81445d3651094f2fe8a2616 https://www.encodeproject.org/files/ENCFF158TTG/@@download/ENCFF158TTG.bigWig released s3://encode-public/2016/10/21/479af388-104a-44e0-85c3-98687a450abf/ENCFF158TTG.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF885LQO bigWig bigWig signal of unique reads ce11 ENCSR831TIJ Control ChIP-seq /worm-donors/ENCDO229TVC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185718/'], '@type': ['Target', 'Item'], 'name': 'ces-1-celegans', 'label': 'ces-1', '@id': '/targets/ces-1-celegans/', 'title': 'ces-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'bbc284b0-c169-4cf7-a97f-5d53fb70f970', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF629ZYE/ 9975747 Kevin White, UChicago e8bd0710433375c4a881f5a79b4d128d https://www.encodeproject.org/files/ENCFF885LQO/@@download/ENCFF885LQO.bigWig released s3://encode-public/2016/10/21/99d19bb8-a12f-4fa4-8185-b23559678c44/ENCFF885LQO.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF523RNC bam bam alignments GRCh38 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 2 2_1 72 /files/ENCFF110MCL/, /files/ENCFF498FZT/ 2414630470 ENCODE Processing Pipeline 8f5cdc2cecf432ab060eb1f0862182d5 https://www.encodeproject.org/files/ENCFF523RNC/@@download/ENCFF523RNC.bam released s3://encode-public/2020/09/16/c015459e-0ba2-4aed-b631-a7dce47e8f6e/ENCFF523RNC.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF498FZT fastq fastq reads ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 2 2_1 76 single-ended 2607890139 Bradley Bernstein, Broad 629a029882fa449224209e2fdfbfc38b SRA:SRR5339518 https://www.encodeproject.org/files/ENCFF498FZT/@@download/ENCFF498FZT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/21/3d5c8188-d250-43fe-a15e-73bdb5960e9b/ENCFF498FZT.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF566VUE fastq fastq reads ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 72 single-ended 1345588496 Bradley Bernstein, Broad 79143523a456ed258907d6b93a24785f SRA:SRR5339515 https://www.encodeproject.org/files/ENCFF566VUE/@@download/ENCFF566VUE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/b3a2eec1-043d-4c04-8449-761b3c9c43b0/ENCFF566VUE.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF360DUF fastq fastq reads ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 76 single-ended 1044028615 Bradley Bernstein, Broad 2afbda095b044a244cb4dbb2b3820f70 SRA:SRR5339516 https://www.encodeproject.org/files/ENCFF360DUF/@@download/ENCFF360DUF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/0d73462b-72f4-40f9-ba3c-4be7b74ed9d0/ENCFF360DUF.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF321CPH fastq fastq reads ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 76 single-ended 1055597357 Bradley Bernstein, Broad 6244c726474aef74ca0a52fc6e173ece SRA:SRR5339517 https://www.encodeproject.org/files/ENCFF321CPH/@@download/ENCFF321CPH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/4ee6ad76-5169-456e-a199-265a8e524f1c/ENCFF321CPH.fastq.gz mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF071BHV bam bam unfiltered alignments hg19 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 2 2_1 76 /files/ENCFF498FZT/, /files/ENCFF807MUK/ 3017651781 ENCODE Processing Pipeline 20387dd1e6d1306ce5bb81cc231a7cbe https://www.encodeproject.org/files/ENCFF071BHV/@@download/ENCFF071BHV.bam released s3://encode-public/2016/10/26/d72972f4-899a-4b2d-9d79-6d7d3ec5b4a8/ENCFF071BHV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF679TYB bam bam alignments hg19 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 2 2_1 76 /files/ENCFF498FZT/, /files/ENCFF807MUK/ 2444756998 ENCODE Processing Pipeline 68c0cb61dc6b3a10d779b2c1bd99cfbd https://www.encodeproject.org/files/ENCFF679TYB/@@download/ENCFF679TYB.bam released s3://encode-public/2016/10/26/e0b1257d-449a-4038-9e68-eb8754e0ce8d/ENCFF679TYB.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF176OMP bam bam unfiltered alignments hg19 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF566VUE/, /files/ENCFF807MUK/, /files/ENCFF321CPH/, /files/ENCFF360DUF/ 3339027631 ENCODE Processing Pipeline b0626dda14dfd1b060d8028456709d27 https://www.encodeproject.org/files/ENCFF176OMP/@@download/ENCFF176OMP.bam released s3://encode-public/2016/10/26/d7fd0319-f9be-4ee3-9a86-22375d496b83/ENCFF176OMP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF494MEJ bam bam unfiltered alignments GRCh38 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ 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s3://encode-public/2016/10/26/edf4f397-ba1d-4bc5-b9b2-a372903470c0/ENCFF693DSK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF287TUT bam bam alignments GRCh38 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 2 2_1 76 /files/ENCFF498FZT/, /files/ENCFF643CGH/ 2448088589 ENCODE Processing Pipeline ada2c98aa5e861a30f2df824eeeaf2e0 https://www.encodeproject.org/files/ENCFF287TUT/@@download/ENCFF287TUT.bam released s3://encode-public/2016/10/26/51b1f450-4414-48aa-a8cf-7d47bedd8ff3/ENCFF287TUT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF302HIW bam bam alignments GRCh38 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF566VUE/, /files/ENCFF643CGH/, /files/ENCFF321CPH/, /files/ENCFF360DUF/ 2186406922 ENCODE Processing Pipeline d74e8686ac3bb55c19b90a95f50f2a95 https://www.encodeproject.org/files/ENCFF302HIW/@@download/ENCFF302HIW.bam released s3://encode-public/2016/10/26/2677708f-011c-4979-b5f6-86bb00c3ddbd/ENCFF302HIW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF838ULP bam bam alignments hg19 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 76 /files/ENCFF566VUE/, /files/ENCFF807MUK/, /files/ENCFF321CPH/, /files/ENCFF360DUF/ 2183783158 ENCODE Processing Pipeline f02f6358c48cbe1a01771987636fe327 https://www.encodeproject.org/files/ENCFF838ULP/@@download/ENCFF838ULP.bam released s3://encode-public/2016/10/26/f54bb573-b308-4658-a23f-d86db2eb8b01/ENCFF838ULP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF803SFA bam bam unfiltered alignments GRCh38 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 72 /files/ENCFF360DUF/, /files/ENCFF110MCL/, /files/ENCFF321CPH/, /files/ENCFF566VUE/ 3238303960 ENCODE Processing Pipeline 8cb4eb7e41862c74d83b24ef85059c7d https://www.encodeproject.org/files/ENCFF803SFA/@@download/ENCFF803SFA.bam released s3://encode-public/2020/09/16/c7909d96-4827-4d3e-aae7-2ac7b169df20/ENCFF803SFA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF622ZXP bam bam alignments GRCh38 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 1 1_1 72 /files/ENCFF360DUF/, /files/ENCFF110MCL/, /files/ENCFF321CPH/, /files/ENCFF566VUE/ 2147396956 ENCODE Processing Pipeline cbe5cd7ca7cc606039c07d32619a116c https://www.encodeproject.org/files/ENCFF622ZXP/@@download/ENCFF622ZXP.bam released s3://encode-public/2020/09/16/b82c5871-2a21-4b73-bfae-d2a04bfd708d/ENCFF622ZXP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF264WGL bam bam unfiltered alignments GRCh38 ENCSR897RRA Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-06-02 ENCODE 200-600 2 2_1 72 /files/ENCFF110MCL/, /files/ENCFF498FZT/ 2964049595 ENCODE Processing Pipeline 0644b477b2d328c5e05bd7490b8ea7cd https://www.encodeproject.org/files/ENCFF264WGL/@@download/ENCFF264WGL.bam released s3://encode-public/2020/09/16/f43e8838-010f-4817-8f39-c4dcf7052dfe/ENCFF264WGL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, mixed read lengths ENCFF006KML fastq fastq reads ENCSR871SEB Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 5400217104 Roderic Guigo, CRG f1e73ec5bc5d2bb1214fc3bcea87b107 https://www.encodeproject.org/files/ENCFF006KML/@@download/ENCFF006KML.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/c4de14b9-43c3-4e79-bede-3dce0a9854d8/ENCFF006KML.fastq.gz ENCFF923GDP fastq fastq reads ENCSR871SEB Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4137705839 Roderic Guigo, CRG 6f35f8df386f3fd45b27c0c789a11ea7 https://www.encodeproject.org/files/ENCFF923GDP/@@download/ENCFF923GDP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/ab2b43d8-d30c-44af-980c-081fc1846696/ENCFF923GDP.fastq.gz ENCFF507DSR bam bam alignments GRCh38 ENCSR871SEB Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF923GDP/ 4576044398 Roderic Guigo, CRG 4e78bb16d27b14f4449a19a873114e38 https://www.encodeproject.org/files/ENCFF507DSR/@@download/ENCFF507DSR.bam released s3://encode-public/2022/01/27/a16991e9-94ce-42af-83af-386cc6e79368/ENCFF507DSR.bam Lab custom GRCh38 released ENCFF144DPU bam bam alignments GRCh38 ENCSR871SEB Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF006KML/ 5201609321 Roderic Guigo, CRG f7897974d5d425a43595f5ca425336a9 https://www.encodeproject.org/files/ENCFF144DPU/@@download/ENCFF144DPU.bam released s3://encode-public/2022/01/27/c609c608-d971-4df6-9f03-01cca909c577/ENCFF144DPU.bam Lab custom GRCh38 released ENCFF044DBR fastq fastq reads ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 163245862 Michael Snyder, Stanford 858db1f2a25428959a821562e554d06d https://www.encodeproject.org/files/ENCFF044DBR/@@download/ENCFF044DBR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b688f24f-c19a-46a1-8c71-7cb6a7830cc9/ENCFF044DBR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF660ROS fastq fastq reads ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 134637145 Michael Snyder, Stanford a47ce371a82468cee312385a4ed40fab https://www.encodeproject.org/files/ENCFF660ROS/@@download/ENCFF660ROS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d1f7e900-df0c-479f-810d-bc47d255cd3d/ENCFF660ROS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF790NHW bam bam alignments ce10 ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF044DBR/, /files/ENCFF660ROS/, /files/ENCFF987UMF/ 373549358 Kevin White, UChicago 72d162b184ff1952eaf9264df18bdebe https://www.encodeproject.org/files/ENCFF790NHW/@@download/ENCFF790NHW.bam released s3://encode-public/2016/10/18/5a612855-0388-4f54-bc0a-1346a80c28be/ENCFF790NHW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF608TPF bam bam alignments ce11 ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF044DBR/, /files/ENCFF660ROS/, /files/ENCFF586MOL/ 373912912 Kevin White, UChicago 0ff7c17e9005dc541ed8f8add8708314 https://www.encodeproject.org/files/ENCFF608TPF/@@download/ENCFF608TPF.bam released s3://encode-public/2016/10/18/abcaca37-9c74-4cab-85ba-5ad95fe0ec22/ENCFF608TPF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF609KWT bigWig bigWig read-depth normalized signal ce10 ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF790NHW/ 9966260 Kevin White, UChicago a99e38841d8d5c8632aaa386f90865d4 https://www.encodeproject.org/files/ENCFF609KWT/@@download/ENCFF609KWT.bigWig released s3://encode-public/2016/10/20/44f65dd5-0979-434d-a9fe-9def235a8974/ENCFF609KWT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF376AHB bigWig bigWig signal of unique reads ce10 ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF790NHW/ 10029199 Kevin White, UChicago ce38994241dfc88e3cb6fbc2d235c638 https://www.encodeproject.org/files/ENCFF376AHB/@@download/ENCFF376AHB.bigWig released s3://encode-public/2016/10/20/d227ee11-4975-4b72-9279-65e9643b1cdb/ENCFF376AHB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF821ZDZ bigWig bigWig read-depth normalized signal ce11 ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF608TPF/ 9965332 Kevin White, UChicago 566cd0ec5c07963f3aff37d858d0ffab https://www.encodeproject.org/files/ENCFF821ZDZ/@@download/ENCFF821ZDZ.bigWig released s3://encode-public/2016/10/20/c6656332-da03-4def-b7df-da2c9f8da992/ENCFF821ZDZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF322WRN bigWig bigWig signal of unique reads ce11 ENCSR056ZSZ Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF608TPF/ 10027682 Kevin White, UChicago 94ade6985b409dfea3de4476980b233b https://www.encodeproject.org/files/ENCFF322WRN/@@download/ENCFF322WRN.bigWig released s3://encode-public/2016/10/20/b973d56b-dcc3-4795-836a-632d9e91584e/ENCFF322WRN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF484RXR fastq fastq reads ENCSR447FVP Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1227221916 Richard Myers, HAIB 27f3fbcfa778dc76a0094101adcf8b85 SRA:SRR5338731 https://www.encodeproject.org/files/ENCFF484RXR/@@download/ENCFF484RXR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/8747759a-49a5-4d7d-8e1c-563564c3467a/ENCFF484RXR.fastq.gz ENCFF017YFK bam bam alignments hg19 ENCSR447FVP Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF484RXR/ 1132243061 ENCODE Processing Pipeline 18022c9ddcf3cfb680112a869e4c506b https://www.encodeproject.org/files/ENCFF017YFK/@@download/ENCFF017YFK.bam released s3://encode-public/2016/01/14/a098e086-8c58-4bd5-827d-2f800b2ae6e3/ENCFF017YFK.bam ENCODE3 hg19 archived ENCFF150GGB bam bam unfiltered alignments GRCh38 ENCSR447FVP Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF484RXR/ 1408998247 ENCODE Processing Pipeline bfcbbfdb2f0fca12c4b9548c96795388 https://www.encodeproject.org/files/ENCFF150GGB/@@download/ENCFF150GGB.bam released s3://encode-public/2016/05/06/58d60606-5e57-4ecc-a7f2-83980936d79a/ENCFF150GGB.bam ENCODE3 GRCh38 archived ENCFF982GQU bam bam alignments GRCh38 ENCSR447FVP Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF484RXR/ 1132210727 ENCODE Processing Pipeline 02c5512717ceb175296f6e16a89ae3fe https://www.encodeproject.org/files/ENCFF982GQU/@@download/ENCFF982GQU.bam released s3://encode-public/2016/05/06/5fcf17b6-d2d3-42c0-b196-117eda945f52/ENCFF982GQU.bam ENCODE3 GRCh38 archived ENCFF773BHH bam bam unfiltered alignments hg19 ENCSR447FVP Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF484RXR/ 1406813692 ENCODE Processing Pipeline 490405b3f763f83a5f6be11a9e60d124 https://www.encodeproject.org/files/ENCFF773BHH/@@download/ENCFF773BHH.bam released s3://encode-public/2017/03/10/95470c00-b175-4763-8de8-c17a71ac7a92/ENCFF773BHH.bam ENCODE3 hg19 archived ENCFF302FKA bam bam unfiltered alignments GRCh38 ENCSR447FVP Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF484RXR/ 1407880114 ENCODE Processing Pipeline f6a9ace3e51e3043303985238725c8cf https://www.encodeproject.org/files/ENCFF302FKA/@@download/ENCFF302FKA.bam released s3://encode-public/2020/06/06/28c578fa-77b4-4f66-b97c-ac7901356f03/ENCFF302FKA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF421MTO bam bam alignments GRCh38 ENCSR447FVP Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF484RXR/ 1169657549 ENCODE Processing Pipeline c7febeeff1cac3ab8a517f88d31638e6 https://www.encodeproject.org/files/ENCFF421MTO/@@download/ENCFF421MTO.bam released s3://encode-public/2020/06/06/010a21de-0069-4c12-9166-233e6e84cfc7/ENCFF421MTO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF671DGI fastq fastq reads ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 91508782 Michael Snyder, Stanford 2f18201e28fcfc5b9d7432bb99172c35 https://www.encodeproject.org/files/ENCFF671DGI/@@download/ENCFF671DGI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/bceeb6ce-500e-46d7-b847-c4d4d4e63e55/ENCFF671DGI.fastq.gz ENCFF202MNA fastq fastq reads ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 92588080 Michael Snyder, Stanford 2ca2868214e4da65cdf2cf51994f6cca https://www.encodeproject.org/files/ENCFF202MNA/@@download/ENCFF202MNA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/4d88efef-4e04-4910-9035-cc89099a1c0a/ENCFF202MNA.fastq.gz ENCFF194FKY bam bam alignments ce10 ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF202MNA/, /files/ENCFF671DGI/, /files/ENCFF987UMF/ 240369675 Kevin White, UChicago ade3957e2efcbb1b64d77bdb8da76409 https://www.encodeproject.org/files/ENCFF194FKY/@@download/ENCFF194FKY.bam released s3://encode-public/2018/01/09/7661ba96-411f-4e2c-ba2e-01ce7bff8333/ENCFF194FKY.bam Lab custom ce10 archived ENCFF275CFQ bam bam alignments ce11 ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF202MNA/, /files/ENCFF671DGI/, /files/ENCFF586MOL/ 240644091 Kevin White, UChicago 0edd19761303691336b80e447a319b62 https://www.encodeproject.org/files/ENCFF275CFQ/@@download/ENCFF275CFQ.bam released s3://encode-public/2018/01/09/a84c0ef7-2cd0-4777-9fd2-cf734ba1379b/ENCFF275CFQ.bam Lab custom ce11 released ENCFF144BIQ bigWig bigWig read-depth normalized signal ce10 ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF194FKY/ 10061006 Kevin White, UChicago 16230edc294fa606778dbab3842fb407 https://www.encodeproject.org/files/ENCFF144BIQ/@@download/ENCFF144BIQ.bigWig released s3://encode-public/2018/01/09/40c6e8b7-4f2c-43d3-a745-7c9792051e9b/ENCFF144BIQ.bigWig Lab custom ce10 archived ENCFF933GFS bigWig bigWig signal of unique reads ce10 ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF194FKY/ 10020640 Kevin White, UChicago dc3c23c30f06674d501fbb8d75c4ce72 https://www.encodeproject.org/files/ENCFF933GFS/@@download/ENCFF933GFS.bigWig released s3://encode-public/2018/01/09/f3a49279-6304-4981-84ef-6c4f8198a78b/ENCFF933GFS.bigWig Lab custom ce10 archived ENCFF845GOW bigWig bigWig signal of unique reads ce11 ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF275CFQ/ 10019886 Kevin White, UChicago 835c82922d9613530caa3d6677bfc741 https://www.encodeproject.org/files/ENCFF845GOW/@@download/ENCFF845GOW.bigWig released s3://encode-public/2018/01/09/d31153de-87c3-454c-868d-788dbb102e8e/ENCFF845GOW.bigWig Lab custom ce11 released ENCFF123GKQ bigWig bigWig read-depth normalized signal ce11 ENCSR917EGR Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF275CFQ/ 10060430 Kevin White, UChicago e62adc70c31ad9d9088cc7df1d980c0d https://www.encodeproject.org/files/ENCFF123GKQ/@@download/ENCFF123GKQ.bigWig released s3://encode-public/2018/01/09/bdb0d8b8-4022-4234-b21a-95cf72aad4fd/ENCFF123GKQ.bigWig Lab custom ce11 released ENCFF756GQQ fastq fastq reads ENCSR275BEG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 single-ended 1389654289 Richard Myers, HAIB f60602935e639f0a5b75de9b21665bae SRA:SRR5111361 https://www.encodeproject.org/files/ENCFF756GQQ/@@download/ENCFF756GQQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/05/a279a7ce-9d47-4de6-86ae-08408455edaf/ENCFF756GQQ.fastq.gz ENCFF017GWO bam bam unfiltered alignments mm10 ENCSR275BEG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF756GQQ/ 1503022597 ENCODE Processing Pipeline 54a19141ff9ea026e26ae6a3b092395b https://www.encodeproject.org/files/ENCFF017GWO/@@download/ENCFF017GWO.bam released s3://encode-public/2016/05/20/184f46c3-1d2c-4439-94b4-eba3d8122a75/ENCFF017GWO.bam ENCODE3 mm10 archived ENCFF715CTH bam bam alignments mm10 ENCSR275BEG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF756GQQ/ 1158383561 ENCODE Processing Pipeline 07ac0b6e49ce6998f344ba6a9859c6f4 https://www.encodeproject.org/files/ENCFF715CTH/@@download/ENCFF715CTH.bam released s3://encode-public/2016/05/20/02ec5547-36d5-457c-b101-14e03d1e80cd/ENCFF715CTH.bam ENCODE3 mm10 archived ENCFF374SXG bam bam unfiltered alignments mm10 ENCSR275BEG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF756GQQ/, /files/ENCFF309GLL/ 1490619176 ENCODE Processing Pipeline aa78f1862c0ca569352264368be84366 https://www.encodeproject.org/files/ENCFF374SXG/@@download/ENCFF374SXG.bam released s3://encode-public/2020/10/08/15bb5e38-0adf-4083-8e94-c888db056f9c/ENCFF374SXG.bam ENCODE4 v1.5.1 mm10 released ENCFF679VRS bam bam alignments mm10 ENCSR275BEG Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA 2016-01-14 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF756GQQ/, /files/ENCFF309GLL/ 1199542557 ENCODE Processing Pipeline fa8204662a647eb73671a97c344a9de1 https://www.encodeproject.org/files/ENCFF679VRS/@@download/ENCFF679VRS.bam released s3://encode-public/2020/10/08/04125031-fb75-459f-a08e-f7009d23030e/ENCFF679VRS.bam ENCODE4 v1.5.1 mm10 released ENCFF529UTM bam bam unfiltered alignments hg19 ENCSR384OZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF160YIT/ 1451281521 ENCODE Processing Pipeline cc63dad8272e0a54fe9dac61dd70b10b https://www.encodeproject.org/files/ENCFF529UTM/@@download/ENCFF529UTM.bam released s3://encode-public/2018/02/22/9b1a0834-b1cb-49b5-873a-da7cde20e24c/ENCFF529UTM.bam ENCODE3 hg19 archived ENCFF160YIT fastq fastq reads ENCSR384OZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 1290884538 Richard Myers, HAIB 61d6b979f5b077c9b963a57622d6d9ef SRA:SRR8660308 https://www.encodeproject.org/files/ENCFF160YIT/@@download/ENCFF160YIT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/feeb9a60-c16f-4cbc-8879-ebc9565a2f1d/ENCFF160YIT.fastq.gz ENCFF809ITR bam bam unfiltered alignments GRCh38 ENCSR384OZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF160YIT/ 1456394189 ENCODE Processing Pipeline f9798ffefd22713ae8f42df558f2f589 https://www.encodeproject.org/files/ENCFF809ITR/@@download/ENCFF809ITR.bam released s3://encode-public/2016/05/06/018ff1ee-ec2a-4684-aee9-610604772df2/ENCFF809ITR.bam ENCODE3 GRCh38 archived ENCFF733OPN bam bam alignments GRCh38 ENCSR384OZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF160YIT/ 1126684116 ENCODE Processing Pipeline 37c3791d62395b2841475cf08cb7d5ea https://www.encodeproject.org/files/ENCFF733OPN/@@download/ENCFF733OPN.bam released s3://encode-public/2016/05/06/20f36cb7-6576-43aa-8131-100314b29ce6/ENCFF733OPN.bam ENCODE3 GRCh38 archived ENCFF561EHZ bam bam alignments hg19 ENCSR384OZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF160YIT/ 1126652445 ENCODE Processing Pipeline e4b4e9fcd9f39a59635968046009f80b https://www.encodeproject.org/files/ENCFF561EHZ/@@download/ENCFF561EHZ.bam released s3://encode-public/2016/05/07/b5eea724-3d86-46c0-8a26-ab472b599335/ENCFF561EHZ.bam ENCODE3 hg19 archived ENCFF858BUD bam bam alignments GRCh38 ENCSR384OZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF160YIT/, /files/ENCFF110MCL/ 1156335556 ENCODE Processing Pipeline 190b060df8b8c10965bce97fc58c2ef6 https://www.encodeproject.org/files/ENCFF858BUD/@@download/ENCFF858BUD.bam released s3://encode-public/2020/10/27/7dc475da-70a8-4472-a6a7-686662cbab59/ENCFF858BUD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF172JUT bam bam unfiltered alignments GRCh38 ENCSR384OZQ Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1640'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7551/'], '@type': ['Target', 'Item'], 'name': 'ZNF3-human', 'label': 'ZNF3', '@id': '/targets/ZNF3-human/', 'title': 'ZNF3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5c5c79e6-e863-436f-b20b-4b513f5d5a66', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF160YIT/, /files/ENCFF110MCL/ 1445609780 ENCODE Processing Pipeline 0e36d397a0f8fe7e238888077c74e1dc https://www.encodeproject.org/files/ENCFF172JUT/@@download/ENCFF172JUT.bam released s3://encode-public/2020/10/27/e15fefc8-066a-49f8-baf8-9cabf8729d00/ENCFF172JUT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF137PHP bam bam unfiltered alignments hg19 ENCSR257TKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CUX1'], 'aliases': ['michael-snyder:TS-1956'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1523/'], '@type': ['Target', 'Item'], 'label': 'CUX1', 'title': 'CUX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3282cf7-2cce-47f2-aa2a-af4787ce06b7', 'schema_version': '14', 'name': 'CUX1-human', '@id': '/targets/CUX1-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF838XWS/ 989828063 ENCODE Processing Pipeline be5d43eb9905886a1cb3d9e95370aa77 https://www.encodeproject.org/files/ENCFF137PHP/@@download/ENCFF137PHP.bam released s3://encode-public/2018/02/22/d31b4947-5946-4342-9dc6-8757df02ff8c/ENCFF137PHP.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF838XWS fastq fastq reads ENCSR257TKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CUX1'], 'aliases': ['michael-snyder:TS-1956'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1523/'], '@type': ['Target', 'Item'], 'label': 'CUX1', 'title': 'CUX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3282cf7-2cce-47f2-aa2a-af4787ce06b7', 'schema_version': '14', 'name': 'CUX1-human', '@id': '/targets/CUX1-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 892002544 Kevin White, UChicago e9f7b4b6c59cd53bcb13b73ea89fe104 SRA:SRR6213021 https://www.encodeproject.org/files/ENCFF838XWS/@@download/ENCFF838XWS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/17/67fa96e8-0c4f-4721-a168-c4359b6d67da/ENCFF838XWS.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF951BLJ bam bam alignments hg19 ENCSR257TKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CUX1'], 'aliases': ['michael-snyder:TS-1956'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1523/'], '@type': ['Target', 'Item'], 'label': 'CUX1', 'title': 'CUX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3282cf7-2cce-47f2-aa2a-af4787ce06b7', 'schema_version': '14', 'name': 'CUX1-human', '@id': '/targets/CUX1-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF838XWS/ 781671503 ENCODE Processing Pipeline ffe39497e96d6309fe5e48ed63f17052 https://www.encodeproject.org/files/ENCFF951BLJ/@@download/ENCFF951BLJ.bam released s3://encode-public/2016/04/23/c4cc7882-33d2-40d4-a816-97f0b04da895/ENCFF951BLJ.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF818PFV bam bam unfiltered alignments GRCh38 ENCSR257TKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CUX1'], 'aliases': ['michael-snyder:TS-1956'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1523/'], '@type': ['Target', 'Item'], 'label': 'CUX1', 'title': 'CUX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3282cf7-2cce-47f2-aa2a-af4787ce06b7', 'schema_version': '14', 'name': 'CUX1-human', '@id': '/targets/CUX1-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF838XWS/ 993837351 ENCODE Processing Pipeline bb30631f5656a48db904a9bf9dbf7a11 https://www.encodeproject.org/files/ENCFF818PFV/@@download/ENCFF818PFV.bam released s3://encode-public/2016/05/06/a3d36ad2-b1dd-4743-b501-30a5fa981f3e/ENCFF818PFV.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF322EZT bam bam alignments GRCh38 ENCSR257TKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CUX1'], 'aliases': ['michael-snyder:TS-1956'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1523/'], '@type': ['Target', 'Item'], 'label': 'CUX1', 'title': 'CUX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3282cf7-2cce-47f2-aa2a-af4787ce06b7', 'schema_version': '14', 'name': 'CUX1-human', '@id': '/targets/CUX1-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF838XWS/ 781303493 ENCODE Processing Pipeline 0e606b1d226b75e74bc147062d838a6b https://www.encodeproject.org/files/ENCFF322EZT/@@download/ENCFF322EZT.bam released s3://encode-public/2016/05/06/6bc091e8-1e1f-4706-9d60-667d0e2f5c7e/ENCFF322EZT.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF135UTC bam bam alignments GRCh38 ENCSR257TKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CUX1'], 'aliases': ['michael-snyder:TS-1956'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1523/'], '@type': ['Target', 'Item'], 'label': 'CUX1', 'title': 'CUX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3282cf7-2cce-47f2-aa2a-af4787ce06b7', 'schema_version': '14', 'name': 'CUX1-human', '@id': '/targets/CUX1-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF838XWS/, /files/ENCFF110MCL/ 829415469 ENCODE Processing Pipeline dd3458ea2fd599c71dc491b7a842b08c https://www.encodeproject.org/files/ENCFF135UTC/@@download/ENCFF135UTC.bam released s3://encode-public/2020/10/27/d4886e04-e564-4023-afae-c4e3a57dd042/ENCFF135UTC.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF826HUA bam bam unfiltered alignments GRCh38 ENCSR257TKE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CUX1'], 'aliases': ['michael-snyder:TS-1956'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1523/'], '@type': ['Target', 'Item'], 'label': 'CUX1', 'title': 'CUX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f3282cf7-2cce-47f2-aa2a-af4787ce06b7', 'schema_version': '14', 'name': 'CUX1-human', '@id': '/targets/CUX1-human/', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF838XWS/, /files/ENCFF110MCL/ 989497431 ENCODE Processing Pipeline 57bb515edbe4bc2534a9e5a74d7d9cbf https://www.encodeproject.org/files/ENCFF826HUA/@@download/ENCFF826HUA.bam released s3://encode-public/2020/10/27/6481c469-b511-4c26-9749-b56c9476e8a3/ENCFF826HUA.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF330MJC fastq fastq reads ENCSR745QMZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3103104700 Kevin White, UChicago 15479d03b5dc99a9c56fad4b6c9a44f4 SRA:SRR10049631 https://www.encodeproject.org/files/ENCFF330MJC/@@download/ENCFF330MJC.fastq.gz Illumina HiSeq 2500 /files/ENCFF455LJL/, /files/ENCFF446PVB/ released s3://encode-public/2016/03/14/592a1ca9-1ba5-4c9a-a6f6-cb949affdaaa/ENCFF330MJC.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF535KOQ bam bam unfiltered alignments GRCh38 ENCSR745QMZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF330MJC/, /files/ENCFF643CGH/ 3224319953 ENCODE Processing Pipeline d230b018c2a35b4dc8c4ed7d2efdbc46 https://www.encodeproject.org/files/ENCFF535KOQ/@@download/ENCFF535KOQ.bam released s3://encode-public/2016/08/30/e6fc39a6-c3a4-4a29-b06c-d8d4c11bebf9/ENCFF535KOQ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF711KPW bam bam alignments GRCh38 ENCSR745QMZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF330MJC/, /files/ENCFF643CGH/ 2508249481 ENCODE Processing Pipeline 02266de03e81e6966936ec310756b682 https://www.encodeproject.org/files/ENCFF711KPW/@@download/ENCFF711KPW.bam released s3://encode-public/2016/08/30/42caee7d-9c84-4053-9592-698f08ab9f33/ENCFF711KPW.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF944SZT bam bam unfiltered alignments hg19 ENCSR745QMZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF330MJC/, /files/ENCFF807MUK/ 3212593562 ENCODE Processing Pipeline 165bf1938d2a91c9fb67dc0cb1057665 https://www.encodeproject.org/files/ENCFF944SZT/@@download/ENCFF944SZT.bam released s3://encode-public/2016/08/30/63ff834a-1cb0-450f-a8f5-7de2920895cb/ENCFF944SZT.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF873OEB bam bam alignments hg19 ENCSR745QMZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF330MJC/, /files/ENCFF807MUK/ 2509021160 ENCODE Processing Pipeline ea4163ce23c57144ae2f6d8a47a81a6f https://www.encodeproject.org/files/ENCFF873OEB/@@download/ENCFF873OEB.bam released s3://encode-public/2016/08/30/612519e2-55d2-47fe-bcda-a625b1eefb1e/ENCFF873OEB.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF137JSM bam bam unfiltered alignments GRCh38 ENCSR745QMZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF330MJC/ 3217371375 ENCODE Processing Pipeline cb3a75fa6dbbd03b36d3dbea80a9ec8d https://www.encodeproject.org/files/ENCFF137JSM/@@download/ENCFF137JSM.bam released s3://encode-public/2020/10/27/53041427-121d-4127-8e85-e61c5551777f/ENCFF137JSM.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF535ULD bam bam alignments GRCh38 ENCSR745QMZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1586'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7707/'], '@type': ['Target', 'Item'], 'name': 'ZNF148-human', 'label': 'ZNF148', '@id': '/targets/ZNF148-human/', 'title': 'ZNF148 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ad01b516-ac92-413a-9d36-6218d88d57c3', 'status': 'released'} hg19 3 124908121 125120221 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF330MJC/ 2652531697 ENCODE Processing Pipeline ea4d82c8064a3250ccf576823c18e72d https://www.encodeproject.org/files/ENCFF535ULD/@@download/ENCFF535ULD.bam released s3://encode-public/2020/10/27/d6955586-4d37-4375-acab-0e3a96db0ca2/ENCFF535ULD.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF311DOE bam bam unfiltered alignments hg19 ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF754LQQ/, /files/ENCFF390HYY/ 1575551556 ENCODE Processing Pipeline be7d4a5ccb7eabf23f9e3eddaf8f23b9 https://www.encodeproject.org/files/ENCFF311DOE/@@download/ENCFF311DOE.bam released s3://encode-public/2018/02/22/cfb0cfb0-5b79-45bf-819a-dfc633f66b18/ENCFF311DOE.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF390HYY fastq fastq reads ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 757783516 Kevin White, UChicago 4d16e1977135095a8657c28c2b0e7a20 SRA:SRR14104123 https://www.encodeproject.org/files/ENCFF390HYY/@@download/ENCFF390HYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF212LBE/, /files/ENCFF861SAD/ released s3://encode-public/2016/03/14/bcea3a88-eae2-4ae5-9abd-68e297135a98/ENCFF390HYY.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF754LQQ fastq fastq reads ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 708329097 Kevin White, UChicago c2d70a36c0becc282fc4e1e03f82d9b0 SRA:SRR14104124 https://www.encodeproject.org/files/ENCFF754LQQ/@@download/ENCFF754LQQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF212LBE/, /files/ENCFF861SAD/ released s3://encode-public/2016/03/26/3d1ff272-cd89-49cf-b704-fdaae7dab054/ENCFF754LQQ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF023JUD bam bam alignments hg19 ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF754LQQ/, /files/ENCFF390HYY/ 1237864227 ENCODE Processing Pipeline 857e072b3585ef0afa9913331e80b5f7 https://www.encodeproject.org/files/ENCFF023JUD/@@download/ENCFF023JUD.bam released s3://encode-public/2016/04/23/c9af53c0-9687-4c4c-997a-0f4c21cf228c/ENCFF023JUD.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF161WBJ bam bam unfiltered alignments GRCh38 ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF754LQQ/, /files/ENCFF390HYY/ 1580232619 ENCODE Processing Pipeline 2edef377552fd312003ece5a24105acf https://www.encodeproject.org/files/ENCFF161WBJ/@@download/ENCFF161WBJ.bam released s3://encode-public/2016/05/06/4a0d5a54-5010-474c-86a2-bcc502133d7e/ENCFF161WBJ.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF993ZUS bam bam alignments GRCh38 ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF643CGH/, /files/ENCFF754LQQ/, /files/ENCFF390HYY/ 1237263553 ENCODE Processing Pipeline bc57713cc531321136c977e48150f906 https://www.encodeproject.org/files/ENCFF993ZUS/@@download/ENCFF993ZUS.bam released s3://encode-public/2016/05/06/77711434-382c-40b3-be30-c7cc8008bfad/ENCFF993ZUS.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF022OTV bam bam unfiltered alignments GRCh38 ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF754LQQ/, /files/ENCFF390HYY/ 1580241744 ENCODE Processing Pipeline 0383d8e50f83c4e3fdae57b2fe99f74c https://www.encodeproject.org/files/ENCFF022OTV/@@download/ENCFF022OTV.bam released s3://encode-public/2020/10/27/77df37e0-a35d-4e3a-a826-f333826f1ac7/ENCFF022OTV.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF590SSU bam bam alignments GRCh38 ENCSR281WXF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7746/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN9-human', 'label': 'ZSCAN9', '@id': '/targets/ZSCAN9-human/', 'title': 'ZSCAN9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b6cacfef-c9bb-486f-971a-eaa3afb9b23d', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF754LQQ/, /files/ENCFF390HYY/ 1304284719 ENCODE Processing Pipeline 8a62d21e92436b95bc4b439b34cdec03 https://www.encodeproject.org/files/ENCFF590SSU/@@download/ENCFF590SSU.bam released s3://encode-public/2020/10/27/b2f7d061-090c-4f5d-9aa9-f69e68a1f253/ENCFF590SSU.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF813IRX fastq fastq reads ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 34 single-ended 111892836 Michael Snyder, Stanford a7abf4425f3d0d4ce07964486d916976 https://www.encodeproject.org/files/ENCFF813IRX/@@download/ENCFF813IRX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/e82b552e-9c72-4ba1-b293-f32ca4bfdaf3/ENCFF813IRX.fastq.gz missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF330PHS fastq fastq reads ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_2 31 single-ended 123308302 Michael Snyder, Stanford 5283f0d7b4c43ce6e481e5031c890acd https://www.encodeproject.org/files/ENCFF330PHS/@@download/ENCFF330PHS.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/04/26/d1cf712a-8042-4147-ab6a-019e2534250f/ENCFF330PHS.fastq.gz missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF792LWT fastq fastq reads ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_3 31 single-ended 90128351 Michael Snyder, Stanford c393d61d4a8af1c8e6a975f0dab9f2b6 https://www.encodeproject.org/files/ENCFF792LWT/@@download/ENCFF792LWT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/04/26/0aa5bafb-f256-465b-b330-40b0c6602958/ENCFF792LWT.fastq.gz missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF443LSM fastq fastq reads ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 31 single-ended 144374913 Michael Snyder, Stanford dd1a729494176c5b27394fddd665cb97 https://www.encodeproject.org/files/ENCFF443LSM/@@download/ENCFF443LSM.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/04/26/aa58258b-463b-4f92-9b17-af1fbae41384/ENCFF443LSM.fastq.gz missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF077WXD bam bam alignments ce10 ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2 1_1, 1_2, 1_3, 2_1 30 /files/ENCFF792LWT/, /files/ENCFF443LSM/, /files/ENCFF330PHS/, /files/ENCFF813IRX/, /files/ENCFF987UMF/ 554332740 Kevin White, UChicago 9ccb95509813750922c895969505ddba https://www.encodeproject.org/files/ENCFF077WXD/@@download/ENCFF077WXD.bam released s3://encode-public/2017/04/27/1d3477bc-f357-425d-ac2a-4abdf966442a/ENCFF077WXD.bam Lab custom ce10 archived missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF083IMZ bam bam alignments ce11 ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2 1_1, 1_2, 1_3, 2_1 30 /files/ENCFF792LWT/, /files/ENCFF443LSM/, /files/ENCFF330PHS/, /files/ENCFF813IRX/, /files/ENCFF586MOL/ 554819911 Kevin White, UChicago a80f59017f1c501d9757fef35595d5ab https://www.encodeproject.org/files/ENCFF083IMZ/@@download/ENCFF083IMZ.bam released s3://encode-public/2017/04/27/7ce88cc1-3d92-4b38-9258-bf608dfc55c8/ENCFF083IMZ.bam Lab custom ce11 released missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF325DJW bigWig bigWig read-depth normalized signal ce10 ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2 1_1, 1_2, 1_3, 2_1 /files/ENCFF077WXD/ 10065310 Kevin White, UChicago e88972727ddced1e8543e11897d7fb2a https://www.encodeproject.org/files/ENCFF325DJW/@@download/ENCFF325DJW.bigWig released s3://encode-public/2017/04/29/29a5199e-2e5a-4985-8a57-d473ed875c63/ENCFF325DJW.bigWig Lab custom ce10 archived missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF283EDB bigWig bigWig signal of unique reads ce10 ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2 1_1, 1_2, 1_3, 2_1 /files/ENCFF077WXD/ 10059082 Kevin White, UChicago 2a15bf693df445cbcb6321bb5c287213 https://www.encodeproject.org/files/ENCFF283EDB/@@download/ENCFF283EDB.bigWig released s3://encode-public/2017/04/29/95aa7b71-493f-4d21-9a05-050070884dd1/ENCFF283EDB.bigWig Lab custom ce10 archived missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF719KRJ bigWig bigWig read-depth normalized signal ce11 ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2 1_1, 1_2, 1_3, 2_1 /files/ENCFF083IMZ/ 10061306 Kevin White, UChicago f1462f00a8cd79c6ccd64f9a06984275 https://www.encodeproject.org/files/ENCFF719KRJ/@@download/ENCFF719KRJ.bigWig released s3://encode-public/2017/04/29/149ff191-06c8-4506-b6f1-058621d31f55/ENCFF719KRJ.bigWig Lab custom ce11 released missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF096XFH bigWig bigWig signal of unique reads ce11 ENCSR372VPK Control ChIP-seq /worm-donors/ENCDO995RYP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172893/'], '@type': ['Target', 'Item'], 'name': 'lin-11-celegans', 'label': 'lin-11', '@id': '/targets/lin-11-celegans/', 'title': 'lin-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'afd08d12-2fc8-4927-a359-622397fb4e97', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2 1_1, 1_2, 1_3, 2_1 /files/ENCFF083IMZ/ 10061065 Kevin White, UChicago 01518b21d400cc8c8e46a0905a6b088f https://www.encodeproject.org/files/ENCFF096XFH/@@download/ENCFF096XFH.bigWig released s3://encode-public/2017/04/29/c811fa9b-95b4-4f64-9cec-7ed4ab82eadc/ENCFF096XFH.bigWig Lab custom ce11 released missing biosample characterization, missing genetic modification characterization, mixed read lengths, inconsistent platforms ENCFF450VSH fastq fastq reads ENCSR441OGV Control ChIP-seq /fly-donors/ENCDO094WXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41094/'], '@type': ['Target', 'Item'], 'name': 'pum-dmelanogaster', 'label': 'pum', '@id': '/targets/pum-dmelanogaster/', 'title': 'pum (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': 'facbd149-8aee-4796-9dfc-c330276a01a7', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 651390116 Kevin White, UChicago 3923f94a4d77395bc42b9a3deb8d8e21 https://www.encodeproject.org/files/ENCFF450VSH/@@download/ENCFF450VSH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/618d12ce-7abf-4829-ac37-b35901aa9085/ENCFF450VSH.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF193FPZ bam bam alignments dm3 ENCSR441OGV Control ChIP-seq /fly-donors/ENCDO094WXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41094/'], '@type': ['Target', 'Item'], 'name': 'pum-dmelanogaster', 'label': 'pum', '@id': '/targets/pum-dmelanogaster/', 'title': 'pum (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': 'facbd149-8aee-4796-9dfc-c330276a01a7', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF450VSH/ 943253173 Kevin White, UChicago de08215c94e31c274a8529ea0260fd27 https://www.encodeproject.org/files/ENCFF193FPZ/@@download/ENCFF193FPZ.bam released s3://encode-public/2015/08/03/2640a474-2339-40a1-9d19-ef246f1439bc/ENCFF193FPZ.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF398GJL bigWig bigWig signal of unique reads dm3 ENCSR441OGV Control ChIP-seq /fly-donors/ENCDO094WXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41094/'], '@type': ['Target', 'Item'], 'name': 'pum-dmelanogaster', 'label': 'pum', '@id': '/targets/pum-dmelanogaster/', 'title': 'pum (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': 'facbd149-8aee-4796-9dfc-c330276a01a7', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF193FPZ/ 15365696 Kevin White, UChicago c112466b36225964125e2ae73d3816d8 https://www.encodeproject.org/files/ENCFF398GJL/@@download/ENCFF398GJL.bigWig released s3://encode-public/2015/10/05/bd26a36a-5136-4fb0-b265-685a8231c083/ENCFF398GJL.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF074KJD bigWig bigWig read-depth normalized signal dm3 ENCSR441OGV Control ChIP-seq /fly-donors/ENCDO094WXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41094/'], '@type': ['Target', 'Item'], 'name': 'pum-dmelanogaster', 'label': 'pum', '@id': '/targets/pum-dmelanogaster/', 'title': 'pum (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': 'facbd149-8aee-4796-9dfc-c330276a01a7', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF193FPZ/ 15401601 Kevin White, UChicago 4cdade8cfc54a9c4b2f3cc838b964366 https://www.encodeproject.org/files/ENCFF074KJD/@@download/ENCFF074KJD.bigWig released s3://encode-public/2015/10/05/4299c729-c9c8-4fbd-8a38-8d2101e734df/ENCFF074KJD.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF623SBP bam bam alignments dm6 ENCSR441OGV Control ChIP-seq /fly-donors/ENCDO094WXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41094/'], '@type': ['Target', 'Item'], 'name': 'pum-dmelanogaster', 'label': 'pum', '@id': '/targets/pum-dmelanogaster/', 'title': 'pum (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': 'facbd149-8aee-4796-9dfc-c330276a01a7', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF450VSH/ 939821565 Kevin White, UChicago 61e61cc3b1e7fc8d7151d6124c8dcba1 https://www.encodeproject.org/files/ENCFF623SBP/@@download/ENCFF623SBP.bam released s3://encode-public/2016/04/22/1776d325-0bce-4e18-b891-1557d73ca1f9/ENCFF623SBP.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF467ACN bigWig bigWig read-depth normalized signal dm6 ENCSR441OGV Control ChIP-seq /fly-donors/ENCDO094WXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41094/'], '@type': ['Target', 'Item'], 'name': 'pum-dmelanogaster', 'label': 'pum', '@id': '/targets/pum-dmelanogaster/', 'title': 'pum (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': 'facbd149-8aee-4796-9dfc-c330276a01a7', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623SBP/ 17495180 Kevin White, UChicago 208e6772e97fa11bd6ef70dd720b9bac https://www.encodeproject.org/files/ENCFF467ACN/@@download/ENCFF467ACN.bigWig released s3://encode-public/2016/06/20/83da7327-be26-47b2-874b-34565ab306f1/ENCFF467ACN.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF793LPF bigWig bigWig signal of unique reads dm6 ENCSR441OGV Control ChIP-seq /fly-donors/ENCDO094WXO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41094/'], '@type': ['Target', 'Item'], 'name': 'pum-dmelanogaster', 'label': 'pum', '@id': '/targets/pum-dmelanogaster/', 'title': 'pum (Drosophila melanogaster)', 'investigated_as': ['RNA binding protein'], 'uuid': 'facbd149-8aee-4796-9dfc-c330276a01a7', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF623SBP/ 17443299 Kevin White, UChicago cdae5171d9f5581c10a05e0f67b6b48c https://www.encodeproject.org/files/ENCFF793LPF/@@download/ENCFF793LPF.bigWig released s3://encode-public/2016/06/20/bfa6684c-4c5b-4d70-987e-bdbf85ae5a66/ENCFF793LPF.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF343RBU tagAlign tagAlign alignments hg19 ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF421HCG/ 73583609 Anshul Kundaje, Stanford 7a4ff7e26e9927f8a599fd331e5c9279 https://www.encodeproject.org/files/ENCFF343RBU/@@download/ENCFF343RBU.tagAlign.gz archived s3://encode-public/2016/05/02/be1d3b01-0e71-4d73-b5a7-683a62f633d1/ENCFF343RBU.tagAlign.gz Lab custom hg19 archived low read length insufficient read depth ENCFF421HCG fastq fastq reads ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 541767125 Zhiping Weng, UMass 49d6256b7e5f949843b6fd643a1b0e9f SRA:SRR037638 https://www.encodeproject.org/files/ENCFF421HCG/@@download/ENCFF421HCG.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/12/5a2ec9ea-3883-435a-ba0b-eb483f89b99f/ENCFF421HCG.fastq.gz low read length insufficient read depth ENCFF199RAU bam bam unfiltered alignments GRCh38 ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF421HCG/, /files/ENCFF643CGH/ 674206948 ENCODE Processing Pipeline e21eb8377ccbd162b2cf4c496346cc6a https://www.encodeproject.org/files/ENCFF199RAU/@@download/ENCFF199RAU.bam released s3://encode-public/2016/12/19/9cd53adc-20ea-438c-86fc-0c10074d3b43/ENCFF199RAU.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF984JRC bam bam alignments GRCh38 ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF421HCG/, /files/ENCFF643CGH/ 430016464 ENCODE Processing Pipeline d071d08bf00f70d3d628ea7dd215d125 https://www.encodeproject.org/files/ENCFF984JRC/@@download/ENCFF984JRC.bam released s3://encode-public/2016/12/19/3ce28224-5633-419f-98eb-e2ac8b2ae009/ENCFF984JRC.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF747KID bam bam unfiltered alignments hg19 ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF421HCG/, /files/ENCFF807MUK/ 672670897 ENCODE Processing Pipeline f951a37a263ccde2d2de7c917ab2b5da https://www.encodeproject.org/files/ENCFF747KID/@@download/ENCFF747KID.bam released s3://encode-public/2016/12/19/23db9dc1-ee18-450b-b0d8-0843bd4144d6/ENCFF747KID.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF612JQV bam bam alignments hg19 ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF421HCG/, /files/ENCFF807MUK/ 430244353 ENCODE Processing Pipeline 19541a5aac23429139e3799dfda0fab6 https://www.encodeproject.org/files/ENCFF612JQV/@@download/ENCFF612JQV.bam released s3://encode-public/2016/12/19/18f1d3cf-9c82-416f-bd85-a2daf371b9f5/ENCFF612JQV.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF913NTZ bam bam unfiltered alignments GRCh38 ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF421HCG/, /files/ENCFF110MCL/ 658193999 ENCODE Processing Pipeline 2e68313d93bf7b0fd9c2dadfd09171b9 https://www.encodeproject.org/files/ENCFF913NTZ/@@download/ENCFF913NTZ.bam released s3://encode-public/2020/11/13/148f9289-3d69-4504-9cd0-fb2c006d6f57/ENCFF913NTZ.bam ENCODE4 v1.6.1 GRCh38 released low read length insufficient read depth ENCFF713WMW bam bam alignments GRCh38 ENCSR572KLD Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF421HCG/, /files/ENCFF110MCL/ 464045277 ENCODE Processing Pipeline 5eb930556db59001f6ade1f137be7e33 https://www.encodeproject.org/files/ENCFF713WMW/@@download/ENCFF713WMW.bam released s3://encode-public/2020/11/13/413b58cd-bdff-47cd-bf35-cd6b4223a473/ENCFF713WMW.bam ENCODE4 v1.6.1 GRCh38 released low read length insufficient read depth ENCFF602CKG fastq fastq reads ENCSR116IHZ Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 177780925 Michael Snyder, Stanford 62334f8027ed9a2982379d27e3a27905 https://www.encodeproject.org/files/ENCFF602CKG/@@download/ENCFF602CKG.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/c516974a-9254-4205-a973-5c29f845dfa6/ENCFF602CKG.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF060CXV fastq fastq reads ENCSR116IHZ Control ChIP-seq /worm-donors/ENCDO676VUY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180398/'], '@type': ['Target', 'Item'], 'name': 'dve-1-celegans', 'label': 'dve-1', '@id': '/targets/dve-1-celegans/', 'title': 'dve-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '566cfe0d-d79a-481b-9097-951b842eaf46', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 175363028 Kevin White, UChicago 1548c50df625f37cc9eff018c7136fe0 https://www.encodeproject.org/files/ENCFF060CXV/@@download/ENCFF060CXV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF122MFW/, /files/ENCFF492URA/, /files/ENCFF141EXT/, /files/ENCFF576YTS/, /files/ENCFF881DKH/ archived s3://encode-public/2016/10/25/b95bf24f-364b-4e89-9339-b1ae9d64cbee/ENCFF060CXV.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF747GMM fastq fastq reads ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF868HAY/ 3125956404 Michael Snyder, Stanford a03825c5405c852f3efd3ee78ae5eaf5 SRA:SRR6214049 https://www.encodeproject.org/files/ENCFF747GMM/@@download/ENCFF747GMM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/4359b8db-e5aa-4151-a506-962ba3c520a4/ENCFF747GMM.fastq.gz mild to moderate bottlenecking ENCFF868HAY fastq fastq reads ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF747GMM/ 3459341201 Michael Snyder, Stanford ff5552908b62d701bb51664738c21439 SRA:SRR6214049 https://www.encodeproject.org/files/ENCFF868HAY/@@download/ENCFF868HAY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/eed285f3-da44-4edd-bae8-5c0199d618d1/ENCFF868HAY.fastq.gz mild to moderate bottlenecking ENCFF021PPH bam bam unfiltered alignments hg19 ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF747GMM/, /files/ENCFF868HAY/ 5957191505 ENCODE Processing Pipeline f46d65d87dca91b73aaa1c0a6ca18acb https://www.encodeproject.org/files/ENCFF021PPH/@@download/ENCFF021PPH.bam released s3://encode-public/2016/10/27/457507e1-85c6-4213-8927-33cac75fca39/ENCFF021PPH.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF933QGF bam bam unfiltered alignments GRCh38 ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF747GMM/, /files/ENCFF868HAY/ 5963441554 ENCODE Processing Pipeline 992cdaa93749bbccf07eb6a4826034f6 https://www.encodeproject.org/files/ENCFF933QGF/@@download/ENCFF933QGF.bam released s3://encode-public/2016/10/27/171e48ad-ac5c-465d-9722-342529ad2682/ENCFF933QGF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF242TYP bam bam alignments GRCh38 ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF747GMM/, /files/ENCFF868HAY/ 4612742733 ENCODE Processing Pipeline 0b97ecec807d68204e9c5c95327eb00c https://www.encodeproject.org/files/ENCFF242TYP/@@download/ENCFF242TYP.bam released s3://encode-public/2016/10/27/5667f2c4-76c0-4f47-b529-6d774d10ed9b/ENCFF242TYP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF976VAT bam bam alignments hg19 ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF747GMM/, /files/ENCFF868HAY/ 4604934387 ENCODE Processing Pipeline d5e98df5309f47498160810c7afe8b98 https://www.encodeproject.org/files/ENCFF976VAT/@@download/ENCFF976VAT.bam released s3://encode-public/2016/10/27/24194bc6-2cd4-4f37-8b99-95af251a14ef/ENCFF976VAT.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF648TKU bam bam alignments GRCh38 ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF747GMM/, /files/ENCFF868HAY/ 4447396035 ENCODE Processing Pipeline 886128bc0b4a2951be25df4ad297dfd2 https://www.encodeproject.org/files/ENCFF648TKU/@@download/ENCFF648TKU.bam released s3://encode-public/2020/06/02/d34f4a90-dc61-4897-89cb-280b40ca4665/ENCFF648TKU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF179NBB bam bam unfiltered alignments GRCh38 ENCSR948PSS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF747GMM/, /files/ENCFF868HAY/ 6017204328 ENCODE Processing Pipeline f7bd7a323e9e23d1ed158c01ebe1964e https://www.encodeproject.org/files/ENCFF179NBB/@@download/ENCFF179NBB.bam released s3://encode-public/2020/06/02/597020f8-16ce-46ba-b36c-678f3fd82501/ENCFF179NBB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF818JPN bam bam unfiltered alignments hg19 ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF420KFM/, /files/ENCFF285JYI/, /files/ENCFF807MUK/ 6750493550 ENCODE Processing Pipeline cd2a501c72c998d85bb50085ec3d27e6 https://www.encodeproject.org/files/ENCFF818JPN/@@download/ENCFF818JPN.bam released s3://encode-public/2018/02/21/f13ca7ab-27a1-4374-b649-59d3c9eb82f9/ENCFF818JPN.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF285JYI fastq fastq reads ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF420KFM/ 3101390017 Michael Snyder, Stanford cff5cc5203cb96f43f3b804b82e51a42 SRA:SRR5111522 https://www.encodeproject.org/files/ENCFF285JYI/@@download/ENCFF285JYI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/7247ffe8-102d-440b-b92b-f36d4411ab7f/ENCFF285JYI.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF420KFM fastq fastq reads ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF285JYI/ 3157656300 Michael Snyder, Stanford 28a4be225e8dfc0f5a98c1b05369f354 SRA:SRR5111522 https://www.encodeproject.org/files/ENCFF420KFM/@@download/ENCFF420KFM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/f9be6c5c-825b-4d6d-a551-5fafec90745c/ENCFF420KFM.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF181PST bam bam alignments hg19 ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF420KFM/, /files/ENCFF285JYI/, /files/ENCFF807MUK/ 5813346620 ENCODE Processing Pipeline 9bf7e8520ea2e944e3d3cad22796e70f https://www.encodeproject.org/files/ENCFF181PST/@@download/ENCFF181PST.bam released s3://encode-public/2015/12/09/017bb618-1da0-407e-85c1-3d9281ac4bf6/ENCFF181PST.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF664TWH bam bam unfiltered alignments GRCh38 ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF420KFM/, /files/ENCFF285JYI/, /files/ENCFF643CGH/ 6763574687 ENCODE Processing Pipeline b22c1dbeb1af6d9f5a9ca27a764b298b https://www.encodeproject.org/files/ENCFF664TWH/@@download/ENCFF664TWH.bam released s3://encode-public/2016/05/06/e8a78209-edb3-46e3-95a1-e0159b388fd5/ENCFF664TWH.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF243UPF bam bam alignments GRCh38 ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF420KFM/, /files/ENCFF285JYI/, /files/ENCFF643CGH/ 5818845076 ENCODE Processing Pipeline c1b18c524b7b69f9b79a4d29ba93f667 https://www.encodeproject.org/files/ENCFF243UPF/@@download/ENCFF243UPF.bam released s3://encode-public/2016/05/06/be1245ee-5881-42ae-a5ce-caa3b784965d/ENCFF243UPF.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF037KTI bam bam unfiltered alignments GRCh38 ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF420KFM/, /files/ENCFF285JYI/ 6671634298 ENCODE Processing Pipeline 327c0f770375371df0ab945cfbb37545 https://www.encodeproject.org/files/ENCFF037KTI/@@download/ENCFF037KTI.bam released s3://encode-public/2020/06/13/c5922d92-bc3d-4cd2-a3ce-856cbcd62921/ENCFF037KTI.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF054JDX bam bam alignments GRCh38 ENCSR387MCX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:IRF1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3659/'], '@type': ['Target', 'Item'], 'label': 'IRF1', 'title': 'IRF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8adb5c12-09b7-44da-83b4-beffd775226f', 'schema_version': '14', 'name': 'IRF1-human', '@id': '/targets/IRF1-human/', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF420KFM/, /files/ENCFF285JYI/ 5487214579 ENCODE Processing Pipeline 53fee0516253dfcc3ab3d4fae20389ab https://www.encodeproject.org/files/ENCFF054JDX/@@download/ENCFF054JDX.bam released s3://encode-public/2020/06/13/c0ae5a1a-06a5-4e7e-a7f9-0df27c7e0ded/ENCFF054JDX.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF235TIT bigWig bigWig signal of unique reads ce11 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF036JTL/ 10046957 Kevin White, UChicago 1c77676d037fdfd532ef7ed62ebe21f5 https://www.encodeproject.org/files/ENCFF235TIT/@@download/ENCFF235TIT.bigWig released s3://encode-public/2018/03/20/6e5345ca-dc1d-4387-92d9-2d1a8db1dbd4/ENCFF235TIT.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF036JTL bam bam alignments ce11 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 32 /files/ENCFF255IAJ/, /files/ENCFF555KXU/, /files/ENCFF586MOL/ 456615216 Kevin White, UChicago babe889f2b89a112fe9fb9f1e1d0ae70 https://www.encodeproject.org/files/ENCFF036JTL/@@download/ENCFF036JTL.bam released s3://encode-public/2018/03/20/c6e88d29-56fc-4de6-a2e4-c2b164929fa1/ENCFF036JTL.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF471IOA bigWig bigWig read-depth normalized signal ce11 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF036JTL/ 10054636 Kevin White, UChicago 2778e87a76581698cdead0accfe86a42 https://www.encodeproject.org/files/ENCFF471IOA/@@download/ENCFF471IOA.bigWig released s3://encode-public/2018/03/20/f1d5c38b-531c-4b93-9886-92f31cf46c2d/ENCFF471IOA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF255IAJ fastq fastq reads ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 199881324 Michael Snyder, Stanford 2d38ba14f8af6324aa1e347a6a9d2925 https://www.encodeproject.org/files/ENCFF255IAJ/@@download/ENCFF255IAJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/113bae89-172e-4a39-bb15-74459bcd2b5f/ENCFF255IAJ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF555KXU fastq fastq reads ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 3 3_1 32 single-ended 252235025 Michael Snyder, Stanford 3a10afef1367558c904347559eed4530 https://www.encodeproject.org/files/ENCFF555KXU/@@download/ENCFF555KXU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/01/14/8ddb672e-9f71-4371-998e-4789fd212b81/ENCFF555KXU.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF908QEB bigWig bigWig control normalized signal ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF973MAP/, /files/ENCFF726OWJ/, /files/ENCFF092WJY/ 10344492 Kevin White, UChicago 486e2c2cc4cdafd0449a15b1e1901b57 https://www.encodeproject.org/files/ENCFF908QEB/@@download/ENCFF908QEB.bigWig archived s3://encode-public/2016/01/15/065f2e1f-c536-4f7c-960a-90d5c2930cb8/ENCFF908QEB.bigWig missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF782DIK bigWig bigWig control normalized signal ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF973MAP/, /files/ENCFF726OWJ/, /files/ENCFF092WJY/ 10342922 Kevin White, UChicago dd760ca39a58a7bf03a842ba8279225d https://www.encodeproject.org/files/ENCFF782DIK/@@download/ENCFF782DIK.bigWig archived s3://encode-public/2016/01/15/a7077fb6-6f20-4a58-bebe-373893162c25/ENCFF782DIK.bigWig missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF005QJU bigWig bigWig read-depth normalized signal ce10 ENCSR294SZY Control ChIP-seq UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF973MAP/, /files/ENCFF726OWJ/, /files/ENCFF123ZBJ/, /files/ENCFF092WJY/ 10332778 Kevin White, UChicago 4525be3e3680e08690a78bec6164da8d https://www.encodeproject.org/files/ENCFF535GNF/@@download/ENCFF535GNF.bigWig archived s3://encode-public/2016/01/15/f4495cf0-dc59-42a0-ab5c-b6eaaa4e7e28/ENCFF535GNF.bigWig missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF973MAP bam bam alignments ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 /files/ENCFF987UMF/, /files/ENCFF255IAJ/ 204263285 Kevin White, UChicago e2b62126a3c803a90865abd6e6f18fe5 https://www.encodeproject.org/files/ENCFF973MAP/@@download/ENCFF973MAP.bam archived s3://encode-public/2016/05/06/4ec9bfbd-90b5-4710-aa33-aa8b03580023/ENCFF973MAP.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF092WJY bam bam alignments ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 3 3_1 32 /files/ENCFF987UMF/, /files/ENCFF555KXU/ 252006181 Kevin White, UChicago 3b25c3c7263077f8683e6f2ad4642d3f https://www.encodeproject.org/files/ENCFF092WJY/@@download/ENCFF092WJY.bam archived s3://encode-public/2016/05/06/bddd3570-eb0a-4af8-8220-69d33e19ecda/ENCFF092WJY.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF868MUM bigWig bigWig read-depth normalized signal ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': 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insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 /files/ENCFF505BPZ/ 10027915 Kevin White, UChicago 70328037facd1cefcbb2f4dca14e278d https://www.encodeproject.org/files/ENCFF945XHB/@@download/ENCFF945XHB.bigWig released s3://encode-public/2016/05/06/8b7bf686-d869-4de5-bd36-1b4b10861d11/ENCFF945XHB.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF296EEC bam bam alignments ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 3 3_1 32 /files/ENCFF555KXU/, /files/ENCFF987UMF/ 252010550 Kevin White, UChicago 581e78f86d0740716ccf6520e52ffbed https://www.encodeproject.org/files/ENCFF296EEC/@@download/ENCFF296EEC.bam archived s3://encode-public/2016/10/18/f1c0d11f-9c48-4b4d-9d09-cfc9c9ddf4b5/ENCFF296EEC.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF210IXZ bam bam alignments ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 /files/ENCFF255IAJ/, /files/ENCFF987UMF/ 204263373 Kevin White, UChicago bae0d75896ce3799f428136147b40fcc https://www.encodeproject.org/files/ENCFF210IXZ/@@download/ENCFF210IXZ.bam archived s3://encode-public/2016/10/18/05620eff-c70d-4743-be50-6cf2c0225480/ENCFF210IXZ.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF490SKX bam bam alignments ce11 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 3 3_1 32 /files/ENCFF555KXU/, /files/ENCFF586MOL/ 252208866 Kevin White, UChicago 46dc58e7958a17dc984c088e96238c9c https://www.encodeproject.org/files/ENCFF490SKX/@@download/ENCFF490SKX.bam archived s3://encode-public/2016/10/18/5ea2f373-c881-43ca-9d9a-e972ae04190e/ENCFF490SKX.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF532TKE bam bam alignments ce11 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 /files/ENCFF255IAJ/, /files/ENCFF586MOL/ 204408430 Kevin White, UChicago bb39eea3d9513cb04fd9446fe774d507 https://www.encodeproject.org/files/ENCFF532TKE/@@download/ENCFF532TKE.bam archived s3://encode-public/2016/10/18/61df0c0e-6812-4273-baa6-a3cedea855c7/ENCFF532TKE.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF505BPZ bam bam alignments ce10 ENCSR294SZY Control ChIP-seq /worm-donors/ENCDO837ZNJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2, 3 2_1, 3_1 32 /files/ENCFF987UMF/, /files/ENCFF255IAJ/, /files/ENCFF555KXU/ 456273862 Kevin White, UChicago f4b99c63155308885352b3551d90eff8 https://www.encodeproject.org/files/ENCFF505BPZ/@@download/ENCFF505BPZ.bam released s3://encode-public/2017/06/30/39b5cb98-11ce-445d-8cc6-4566b4dac204/ENCFF505BPZ.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF258SYJ fastq fastq reads ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1 1_1 36 single-ended 910220355 Kevin White, UChicago aabe085b471b9dec9e8e4428e4fae4dc https://www.encodeproject.org/files/ENCFF258SYJ/@@download/ENCFF258SYJ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/14/48308c3b-d6a3-466d-a809-d64c75d9749a/ENCFF258SYJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF992HNQ fastq fastq reads ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 2 2_1 36 single-ended 636747022 Kevin White, UChicago 19832f39a44c38d361d5ed182a64ba84 https://www.encodeproject.org/files/ENCFF992HNQ/@@download/ENCFF992HNQ.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/06/15/e1c1fbaf-575e-4508-806e-a24a987c9f0b/ENCFF992HNQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF488LSG bam bam alignments dm3 ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 36 /files/ENCFF059UHX/, /files/ENCFF258SYJ/, /files/ENCFF992HNQ/ 2128497087 Kevin White, UChicago 9289bc064111f2fc9fd155d50dbbc0a1 https://www.encodeproject.org/files/ENCFF488LSG/@@download/ENCFF488LSG.bam released s3://encode-public/2017/06/18/a582d8d5-40a2-43a4-8136-ca23b1f4e095/ENCFF488LSG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF102ZXO bam bam alignments dm6 ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 36 /files/ENCFF479RCH/, /files/ENCFF258SYJ/, /files/ENCFF992HNQ/ 2109893329 Kevin White, UChicago 50f97ec6f493e76bdcdd172790e6af0f https://www.encodeproject.org/files/ENCFF102ZXO/@@download/ENCFF102ZXO.bam released s3://encode-public/2017/06/28/34bebe9d-0676-4041-9ca0-c0cc1fccbd2d/ENCFF102ZXO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF030CVV bigWig bigWig signal of unique reads dm3 ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF488LSG/ 15655879 Kevin White, UChicago 0584a95ef53f90783cab0f8f76686d51 https://www.encodeproject.org/files/ENCFF030CVV/@@download/ENCFF030CVV.bigWig released s3://encode-public/2017/06/29/7d6a5c7d-e127-421f-aa67-8116bda08889/ENCFF030CVV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF397EZJ bigWig bigWig read-depth normalized signal dm3 ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF488LSG/ 15587158 Kevin White, UChicago 9d03b759a73f7680ac139ffabdaafbed https://www.encodeproject.org/files/ENCFF397EZJ/@@download/ENCFF397EZJ.bigWig released s3://encode-public/2017/06/29/d2a4c84a-2b9f-4b7d-bb43-8b14c9c15ae7/ENCFF397EZJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF117MSO bigWig bigWig read-depth normalized signal dm6 ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF102ZXO/ 17772871 Kevin White, UChicago 435461b7fbb86bcac306906f5e1faac1 https://www.encodeproject.org/files/ENCFF117MSO/@@download/ENCFF117MSO.bigWig released s3://encode-public/2017/07/03/4d05647e-5a2c-43b3-aa45-68074fd708c9/ENCFF117MSO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF941KJZ bigWig bigWig signal of unique reads dm6 ENCSR992YDB Control ChIP-seq /fly-donors/ENCDO369ZVQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36039/'], '@type': ['Target', 'Item'], 'name': 'eve-dmelanogaster', 'label': 'eve', '@id': '/targets/eve-dmelanogaster/', 'title': 'eve (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '25a4d51a-8e2a-4610-8225-3ed3508c2ef6', 'status': 'released'} dm3 2R 5857941 5879114 DNA 2017-09-28 modENCODE >200 1, 2 1_1, 2_1 /files/ENCFF102ZXO/ 17873414 Kevin White, UChicago 6221e85c3f890bc8284e8e9ecfa7d7d7 https://www.encodeproject.org/files/ENCFF941KJZ/@@download/ENCFF941KJZ.bigWig released s3://encode-public/2017/07/03/1713c92b-aef5-461d-9b1d-fefc58256f1a/ENCFF941KJZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF116GQL bam bam unfiltered alignments hg19 ENCSR298QDM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/81628/'], '@type': ['Target', 'Item'], 'name': 'TSC22D4-human', 'label': 'TSC22D4', '@id': '/targets/TSC22D4-human/', 'title': 'TSC22D4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e5e8ae83-2618-4af8-86d6-f85a2aa233d8', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF898SRJ/, /files/ENCFF807MUK/, /files/ENCFF703OVM/ 3671363337 ENCODE Processing Pipeline cd8afc7ab58850fdeef4b1fbd550671f https://www.encodeproject.org/files/ENCFF116GQL/@@download/ENCFF116GQL.bam released s3://encode-public/2018/02/21/db425a6d-d40b-4829-8590-5ec0c97c2321/ENCFF116GQL.bam ENCODE3 hg19 archived low read depth, missing genetic modification characterization, missing biosample characterization ENCFF703OVM fastq fastq reads ENCSR298QDM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/81628/'], '@type': ['Target', 'Item'], 'name': 'TSC22D4-human', 'label': 'TSC22D4', '@id': '/targets/TSC22D4-human/', 'title': 'TSC22D4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e5e8ae83-2618-4af8-86d6-f85a2aa233d8', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF898SRJ/ 1638604279 Michael Snyder, Stanford 0e5762460f7a03d1f9d7d1e2957a6aa1 SRA:SRR5111386 https://www.encodeproject.org/files/ENCFF703OVM/@@download/ENCFF703OVM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/b48ba0f4-b44a-451a-b177-8d649a940879/ENCFF703OVM.fastq.gz low read depth, missing genetic modification characterization, missing biosample characterization ENCFF898SRJ fastq fastq reads ENCSR298QDM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': 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'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/81628/'], '@type': ['Target', 'Item'], 'name': 'TSC22D4-human', 'label': 'TSC22D4', '@id': '/targets/TSC22D4-human/', 'title': 'TSC22D4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e5e8ae83-2618-4af8-86d6-f85a2aa233d8', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF898SRJ/, /files/ENCFF807MUK/, /files/ENCFF703OVM/ 3064134028 ENCODE Processing Pipeline 6a7584bb1006602a4316d5d8cd1f4c0d https://www.encodeproject.org/files/ENCFF930DZH/@@download/ENCFF930DZH.bam released s3://encode-public/2015/12/09/f01b9e86-a04e-44ed-b9d4-e1ce7e974848/ENCFF930DZH.bam ENCODE3 hg19 archived low read depth, missing genetic modification characterization, missing biosample characterization ENCFF331RMR bam bam unfiltered alignments GRCh38 ENCSR298QDM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/81628/'], '@type': ['Target', 'Item'], 'name': 'TSC22D4-human', 'label': 'TSC22D4', '@id': '/targets/TSC22D4-human/', 'title': 'TSC22D4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e5e8ae83-2618-4af8-86d6-f85a2aa233d8', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF898SRJ/, /files/ENCFF643CGH/, /files/ENCFF703OVM/ 3676139525 ENCODE Processing Pipeline 473c79951dba5380a793e14a99ae38b7 https://www.encodeproject.org/files/ENCFF331RMR/@@download/ENCFF331RMR.bam released s3://encode-public/2016/05/06/2327cb54-7748-405a-bd8c-be501e86a5b0/ENCFF331RMR.bam ENCODE3 GRCh38 archived low read depth, missing genetic modification characterization, missing biosample characterization ENCFF390ATQ bam bam alignments GRCh38 ENCSR298QDM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/81628/'], '@type': ['Target', 'Item'], 'name': 'TSC22D4-human', 'label': 'TSC22D4', '@id': '/targets/TSC22D4-human/', 'title': 'TSC22D4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e5e8ae83-2618-4af8-86d6-f85a2aa233d8', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 101 /files/ENCFF898SRJ/, /files/ENCFF643CGH/, /files/ENCFF703OVM/ 3066463558 ENCODE Processing Pipeline 94d4466652194eaf3be39d1cbd711412 https://www.encodeproject.org/files/ENCFF390ATQ/@@download/ENCFF390ATQ.bam released s3://encode-public/2016/05/06/bb24816b-ec85-48d8-9266-1ca5c8664481/ENCFF390ATQ.bam ENCODE3 GRCh38 archived low read depth, missing genetic modification characterization, missing biosample characterization ENCFF693EUJ bam bam unfiltered alignments GRCh38 ENCSR298QDM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/81628/'], '@type': ['Target', 'Item'], 'name': 'TSC22D4-human', 'label': 'TSC22D4', '@id': '/targets/TSC22D4-human/', 'title': 'TSC22D4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e5e8ae83-2618-4af8-86d6-f85a2aa233d8', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF703OVM/, /files/ENCFF110MCL/, /files/ENCFF898SRJ/ 3662566286 ENCODE Processing Pipeline 80c23aab7aea90b19fd2aa2cb2be3c81 https://www.encodeproject.org/files/ENCFF693EUJ/@@download/ENCFF693EUJ.bam released s3://encode-public/2020/06/13/f2271729-9e2b-45b0-bcf6-3216c4f05e1c/ENCFF693EUJ.bam ENCODE4 v1.4.0 GRCh38 released low read depth, missing genetic modification characterization, missing biosample characterization ENCFF416EOS bam bam alignments GRCh38 ENCSR298QDM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/81628/'], '@type': ['Target', 'Item'], 'name': 'TSC22D4-human', 'label': 'TSC22D4', '@id': '/targets/TSC22D4-human/', 'title': 'TSC22D4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e5e8ae83-2618-4af8-86d6-f85a2aa233d8', 'status': 'released'} DNA 2016-02-18 ENCODE 450-650 1 1_1 100 /files/ENCFF703OVM/, /files/ENCFF110MCL/, /files/ENCFF898SRJ/ 2994256819 ENCODE Processing Pipeline 75074c599b197101cfa5735c37933e7d https://www.encodeproject.org/files/ENCFF416EOS/@@download/ENCFF416EOS.bam released s3://encode-public/2020/06/13/7e6a5592-361e-4920-a768-d4aff53d49c1/ENCFF416EOS.bam ENCODE4 v1.4.0 GRCh38 released low read depth, missing genetic modification characterization, missing biosample characterization ENCFF570XJZ fastq fastq reads ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 273721039 Michael Snyder, Stanford 5b5cfec0479b52503b08d2e5da329126 https://www.encodeproject.org/files/ENCFF570XJZ/@@download/ENCFF570XJZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f07c1fcd-60d2-4294-9b79-d4165582e3a8/ENCFF570XJZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF511DZO fastq fastq reads ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 169218028 Michael Snyder, Stanford c327bd2182819298fdd81c73cf4a9c4b https://www.encodeproject.org/files/ENCFF511DZO/@@download/ENCFF511DZO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f94a8223-7ad8-4e4d-8251-9b3bbeb28809/ENCFF511DZO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF746RDX bam bam alignments ce10 ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF570XJZ/, /files/ENCFF511DZO/, /files/ENCFF987UMF/ 578774454 Kevin White, UChicago f249b6d560471e76ad0ca6b8b4ecf291 https://www.encodeproject.org/files/ENCFF746RDX/@@download/ENCFF746RDX.bam released s3://encode-public/2016/10/18/99d66886-3dfe-409d-a3a6-3b0f4767e7e8/ENCFF746RDX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF550FOF bam bam alignments ce11 ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF570XJZ/, /files/ENCFF511DZO/, /files/ENCFF586MOL/ 579407151 Kevin White, UChicago d73db937fc1c95520fdc6074534ef16f https://www.encodeproject.org/files/ENCFF550FOF/@@download/ENCFF550FOF.bam released s3://encode-public/2016/10/19/5dbf2270-e946-40bb-b485-46fb7dd72dc7/ENCFF550FOF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF407NGB bigWig bigWig read-depth normalized signal ce10 ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF746RDX/ 10049254 Kevin White, UChicago 2484e3288e518a30a4020a471c98013e https://www.encodeproject.org/files/ENCFF407NGB/@@download/ENCFF407NGB.bigWig released s3://encode-public/2016/10/20/da77b22e-bd35-4889-a2a4-a4224fabe23b/ENCFF407NGB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF501FAW bigWig bigWig signal of unique reads ce10 ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF746RDX/ 10010207 Kevin White, UChicago 331487e46f8aa0f1e9b6a23e7978984c https://www.encodeproject.org/files/ENCFF501FAW/@@download/ENCFF501FAW.bigWig released s3://encode-public/2016/10/20/ca283a50-a5cb-4215-85b9-720fd3c569f6/ENCFF501FAW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF545OVM bigWig bigWig read-depth normalized signal ce11 ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF550FOF/ 10047237 Kevin White, UChicago 21aa58366218834b0379b066dede13b6 https://www.encodeproject.org/files/ENCFF545OVM/@@download/ENCFF545OVM.bigWig released s3://encode-public/2016/10/21/bb5eae91-09e4-48a7-bca2-12efa9d2fc3e/ENCFF545OVM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF448OCO bigWig bigWig signal of unique reads ce11 ENCSR698DCH Control ChIP-seq /worm-donors/ENCDO685NWX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181705/'], '@type': ['Target', 'Item'], 'name': 'nhr-28-celegans', 'label': 'nhr-28', '@id': '/targets/nhr-28-celegans/', 'title': 'nhr-28 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4d980c86-b4e2-42ae-9de1-184491c5e82c', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF550FOF/ 10006458 Kevin White, UChicago 738960dafd06e33a9943b45198c8fd24 https://www.encodeproject.org/files/ENCFF448OCO/@@download/ENCFF448OCO.bigWig released s3://encode-public/2016/10/21/667182cb-36ce-4e64-bea1-99f7bbd76630/ENCFF448OCO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF482RON fastq fastq reads ENCSR975PED Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 1417892681 Zhiping Weng, UMass 4b08faba7e6b5b9936001bda8f47950c SRA:SRR578713 https://www.encodeproject.org/files/ENCFF482RON/@@download/ENCFF482RON.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/dddffb70-1f0b-4fe5-a1fd-f13b33b28c45/ENCFF482RON.fastq.gz ENCFF083QFX bam bam unfiltered alignments hg19 ENCSR975PED Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF482RON/ 1636013001 ENCODE Processing Pipeline d9dad1b5b457a93dd098f6039e72c0d2 https://www.encodeproject.org/files/ENCFF083QFX/@@download/ENCFF083QFX.bam released s3://encode-public/2017/05/10/32645752-ed57-4fa5-bf68-6e09f6afb323/ENCFF083QFX.bam ENCODE3 hg19 archived ENCFF590ERI bam bam alignments hg19 ENCSR975PED Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF482RON/ 1121069863 ENCODE Processing Pipeline 95ecb2325c325ea2639e5dc713339ddc https://www.encodeproject.org/files/ENCFF590ERI/@@download/ENCFF590ERI.bam released s3://encode-public/2017/05/10/fac342f3-5ce0-41df-aa9d-1a304a2ca708/ENCFF590ERI.bam ENCODE3 hg19 archived ENCFF434DAM bam bam alignments GRCh38 ENCSR975PED Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF482RON/ 1121053845 ENCODE Processing Pipeline 8a4b9ad4fbd4bdbed8bc3cce60f993a5 https://www.encodeproject.org/files/ENCFF434DAM/@@download/ENCFF434DAM.bam released s3://encode-public/2017/05/10/77454420-8cb3-4f6b-bf31-2d25bbc0219c/ENCFF434DAM.bam ENCODE3 GRCh38 archived ENCFF710ZUH bam bam unfiltered alignments GRCh38 ENCSR975PED Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF482RON/ 1641330101 ENCODE Processing Pipeline ceea17a5b2a88a0c55e6bf17b4256512 https://www.encodeproject.org/files/ENCFF710ZUH/@@download/ENCFF710ZUH.bam released s3://encode-public/2017/05/10/134f7744-1ba7-41fd-9172-a0c5269b4d39/ENCFF710ZUH.bam ENCODE3 GRCh38 archived ENCFF073NZP bam bam unfiltered alignments GRCh38 ENCSR975PED Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF482RON/, /files/ENCFF110MCL/ 1620410408 ENCODE Processing Pipeline f98d4ab35aa9027118378558dbef9ccd https://www.encodeproject.org/files/ENCFF073NZP/@@download/ENCFF073NZP.bam released s3://encode-public/2020/10/09/8c5d358c-f9e3-4eb4-9083-4ad09006874e/ENCFF073NZP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF365IOI bam bam alignments GRCh38 ENCSR975PED Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF482RON/, /files/ENCFF110MCL/ 1201998645 ENCODE Processing Pipeline 00962252c698a57308c42ed67a542e39 https://www.encodeproject.org/files/ENCFF365IOI/@@download/ENCFF365IOI.bam released s3://encode-public/2020/10/09/627bfd37-cf40-407e-b631-deaac2d3d6a9/ENCFF365IOI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF378ENH fastq fastq reads ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 273269244 Michael Snyder, Stanford 5bb2279d79dbc3b4841e0888eba0299e https://www.encodeproject.org/files/ENCFF378ENH/@@download/ENCFF378ENH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/7ac40c6a-f753-4aaa-8800-062e6305530d/ENCFF378ENH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF260JDM fastq fastq reads ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 247810865 Michael Snyder, Stanford 792fc341ffe8096604a3f1a7c215d7f3 https://www.encodeproject.org/files/ENCFF260JDM/@@download/ENCFF260JDM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4ebf6dde-b400-449c-b1d3-90f1ce4bf6d8/ENCFF260JDM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF718OPX bam bam alignments ce10 ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF378ENH/, /files/ENCFF260JDM/, /files/ENCFF987UMF/ 578756273 Kevin White, UChicago 393ffde31a2d6d6bf7e44029e7f02d6d https://www.encodeproject.org/files/ENCFF718OPX/@@download/ENCFF718OPX.bam released s3://encode-public/2016/10/18/a2cfddc1-0d3e-460c-b3cf-50a323949ebf/ENCFF718OPX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF802ISG bam bam alignments ce11 ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF378ENH/, /files/ENCFF260JDM/, /files/ENCFF586MOL/ 579160543 Kevin White, UChicago 91946f6fce5832d6fb3e375894dd33f8 https://www.encodeproject.org/files/ENCFF802ISG/@@download/ENCFF802ISG.bam released s3://encode-public/2016/10/18/b273fe8e-04e8-4514-8931-882850a790e8/ENCFF802ISG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF028QGZ bigWig bigWig read-depth normalized signal ce10 ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF718OPX/ 10021913 Kevin White, UChicago 324e8e19277bf3696cae95666e462c0b https://www.encodeproject.org/files/ENCFF028QGZ/@@download/ENCFF028QGZ.bigWig released s3://encode-public/2016/10/20/8b1ec089-0b09-49f8-8543-6879eb4e3bab/ENCFF028QGZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF992WJL bigWig bigWig signal of unique reads ce10 ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF718OPX/ 10051497 Kevin White, UChicago dba40e2f32e8d56c1ad893d8d2750c75 https://www.encodeproject.org/files/ENCFF992WJL/@@download/ENCFF992WJL.bigWig released s3://encode-public/2016/10/20/65c83868-6c14-4fe7-ab28-20938f9e2a8a/ENCFF992WJL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF038PIZ bigWig bigWig signal of unique reads ce11 ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF802ISG/ 10048974 Kevin White, UChicago 9807ae719dcd5a529e1eedef2464a125 https://www.encodeproject.org/files/ENCFF038PIZ/@@download/ENCFF038PIZ.bigWig released s3://encode-public/2016/10/21/1c121b2f-194b-4897-b045-94bfc2c96c78/ENCFF038PIZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF111ERM bigWig bigWig read-depth normalized signal ce11 ENCSR364VEB Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF802ISG/ 10024474 Kevin White, UChicago 6f911a83004fd29b5868f3bf24d8b9cf https://www.encodeproject.org/files/ENCFF111ERM/@@download/ENCFF111ERM.bigWig released s3://encode-public/2016/10/21/5ffd6b5e-9fd2-439b-9d56-d3b2fdbab2b7/ENCFF111ERM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF497KCU bam bam unfiltered alignments hg19 ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF795ITH/, /files/ENCFF807MUK/, /files/ENCFF729LDU/ 6960181088 ENCODE Processing Pipeline 11b747a0560344142ece2c6ca2b2711c https://www.encodeproject.org/files/ENCFF497KCU/@@download/ENCFF497KCU.bam released s3://encode-public/2018/02/21/aa79b782-b47a-4e08-80ba-629a045c7858/ENCFF497KCU.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF795ITH fastq fastq reads ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF729LDU/ 3191391852 Michael Snyder, Stanford ed52332f14d82c9a3c0260204e2f6a00 SRA:SRR5112017 https://www.encodeproject.org/files/ENCFF795ITH/@@download/ENCFF795ITH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/e1d2377d-cf67-4ee1-8f0f-57153f04f421/ENCFF795ITH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF729LDU fastq fastq reads ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF795ITH/ 3171158512 Michael Snyder, Stanford c62e37ef89af002aaf42bbea7680bdfb SRA:SRR5112017 https://www.encodeproject.org/files/ENCFF729LDU/@@download/ENCFF729LDU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/30/bcaf0fab-3098-4ab7-899a-f37ee90dc9e7/ENCFF729LDU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF496ANK bam bam alignments hg19 ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF795ITH/, /files/ENCFF807MUK/, /files/ENCFF729LDU/ 5648567169 ENCODE Processing Pipeline b3cf1718fc4d28bc1ea7053ef6d6cd38 https://www.encodeproject.org/files/ENCFF496ANK/@@download/ENCFF496ANK.bam released s3://encode-public/2015/12/09/280dbf52-fec2-4c46-b3d8-9651bf073bf3/ENCFF496ANK.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF846RGV bam bam unfiltered alignments GRCh38 ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF795ITH/, /files/ENCFF643CGH/, /files/ENCFF729LDU/ 6971815261 ENCODE Processing Pipeline f59c7bd561e7c4a22587a4d82e7ef866 https://www.encodeproject.org/files/ENCFF846RGV/@@download/ENCFF846RGV.bam released s3://encode-public/2016/05/06/9c0134f8-ea13-4840-938f-9f48c8d7c244/ENCFF846RGV.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF647OZY bam bam alignments GRCh38 ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 101 /files/ENCFF795ITH/, /files/ENCFF643CGH/, /files/ENCFF729LDU/ 5655056640 ENCODE Processing Pipeline 31fcd2d723af8da5c8e7d9994c597aff https://www.encodeproject.org/files/ENCFF647OZY/@@download/ENCFF647OZY.bam released s3://encode-public/2016/05/06/87f20db9-887e-4b96-90b4-989946af8387/ENCFF647OZY.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF348YRY bam bam unfiltered alignments GRCh38 ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF795ITH/, /files/ENCFF729LDU/ 6972402501 ENCODE Processing Pipeline 73beaa1c0f4ae9ecf128f0795cb4c5ff https://www.encodeproject.org/files/ENCFF348YRY/@@download/ENCFF348YRY.bam released s3://encode-public/2020/06/02/f130b7b8-f949-467a-8c70-b9081adb6bff/ENCFF348YRY.bam ENCODE4 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF055JNE bam bam alignments GRCh38 ENCSR724HDV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/11083/'], '@type': ['Target', 'Item'], 'name': 'DIDO1-human', 'label': 'DIDO1', '@id': '/targets/DIDO1-human/', 'title': 'DIDO1 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '7ac52729-ccfa-4cf0-a9b7-803f663168b6', 'status': 'released'} DNA 2015-12-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF795ITH/, /files/ENCFF729LDU/ 5597116120 ENCODE Processing Pipeline b7bb957bf5f0f63fee97f9ca3bf4dbc7 https://www.encodeproject.org/files/ENCFF055JNE/@@download/ENCFF055JNE.bam released s3://encode-public/2020/06/02/8d2950e9-b960-4b03-b885-2e19ae6acfbc/ENCFF055JNE.bam ENCODE4 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF521UDO fastq fastq reads ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 single-ended 1092182561 Xiang-Dong Fu, UCSD e30994cce5fcb06d12d730b5f781451a SRA:SRR10049565 https://www.encodeproject.org/files/ENCFF521UDO/@@download/ENCFF521UDO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/d381fe0d-6cb6-41d5-b6df-322c8aea8b16/ENCFF521UDO.fastq.gz low read length ENCFF343MYT fastq fastq reads ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 single-ended 1173550390 Xiang-Dong Fu, UCSD 75d6db839f6adb861edb835f2d079663 SRA:SRR10049564 https://www.encodeproject.org/files/ENCFF343MYT/@@download/ENCFF343MYT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/643a5afe-fb37-4e94-ae8f-ef920088051e/ENCFF343MYT.fastq.gz low read length ENCFF993VCM bam bam alignments hg19 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF343MYT/ 1281682015 ENCODE Processing Pipeline 1918c06596271a52f23837659046fedf https://www.encodeproject.org/files/ENCFF993VCM/@@download/ENCFF993VCM.bam released s3://encode-public/2016/02/26/9358bfa2-1d43-402f-b86c-f099d15f8acd/ENCFF993VCM.bam ENCODE3 hg19 archived low read length ENCFF177GKX bam bam alignments hg19 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF521UDO/ 1208196643 ENCODE Processing Pipeline 11cd539b6b39accec764366f9e661a81 https://www.encodeproject.org/files/ENCFF177GKX/@@download/ENCFF177GKX.bam released s3://encode-public/2016/02/26/def7641a-1967-41a0-b690-b5510717975f/ENCFF177GKX.bam ENCODE3 hg19 archived low read length ENCFF473DJD bam bam unfiltered alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF343MYT/ 1717635728 ENCODE Processing Pipeline cd5f9726fc6674f2c2a7dd27e2078151 https://www.encodeproject.org/files/ENCFF473DJD/@@download/ENCFF473DJD.bam released s3://encode-public/2016/05/06/90277faf-8c41-48a2-b661-2e5ce537b8eb/ENCFF473DJD.bam ENCODE3 GRCh38 archived low read length ENCFF599SJC bam bam unfiltered alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF521UDO/ 1600626050 ENCODE Processing Pipeline 3608f316bada70312c18101ae59cb656 https://www.encodeproject.org/files/ENCFF599SJC/@@download/ENCFF599SJC.bam released s3://encode-public/2016/05/06/11e779c7-11b3-438d-8b0f-6ad382ace340/ENCFF599SJC.bam ENCODE3 GRCh38 archived low read length ENCFF584ERB bam bam alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF343MYT/ 1280578022 ENCODE Processing Pipeline 55136aeaf638c7f626a227a6c5c05a32 https://www.encodeproject.org/files/ENCFF584ERB/@@download/ENCFF584ERB.bam released s3://encode-public/2016/05/06/47e2ed88-6288-4114-a71a-bd204a82cf0e/ENCFF584ERB.bam ENCODE3 GRCh38 archived low read length ENCFF092OLM bam bam alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF521UDO/ 1207171684 ENCODE Processing Pipeline 7b4c66988bf1011d764678c4a84f6a28 https://www.encodeproject.org/files/ENCFF092OLM/@@download/ENCFF092OLM.bam released s3://encode-public/2016/05/06/4f196697-31b9-4c19-a70f-f35e539db2ad/ENCFF092OLM.bam ENCODE3 GRCh38 archived low read length ENCFF938RKY bam bam unfiltered alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF521UDO/, /files/ENCFF110MCL/ 1580282777 ENCODE Processing Pipeline 2855b0bf09ded2c921a86c9b3d8e1d75 https://www.encodeproject.org/files/ENCFF938RKY/@@download/ENCFF938RKY.bam released s3://encode-public/2020/10/27/cf06352b-e81b-4d8f-bad6-b3009805b100/ENCFF938RKY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF974LVO bam bam alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF343MYT/, /files/ENCFF110MCL/ 1330479847 ENCODE Processing Pipeline 25055411c28b1fb59a0ef3805f33c6b7 https://www.encodeproject.org/files/ENCFF974LVO/@@download/ENCFF974LVO.bam released s3://encode-public/2020/10/27/c2dcd12e-238d-4d3e-b435-a20ad207b03a/ENCFF974LVO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF174MPG bam bam unfiltered alignments hg19 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF521UDO/ 1593870503 ENCODE Processing Pipeline 93dd0b5714a0eb5e7e5dd02c609f6f19 https://www.encodeproject.org/files/ENCFF174MPG/@@download/ENCFF174MPG.bam released s3://encode-public/2018/01/12/9fec6c5f-1dd5-4eba-a5ed-f3d4c49edb07/ENCFF174MPG.bam ENCODE3 hg19 archived low read length ENCFF844LWD bam bam unfiltered alignments hg19 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF343MYT/ 1710290508 ENCODE Processing Pipeline b825231d106bd21007049f4177336be6 https://www.encodeproject.org/files/ENCFF844LWD/@@download/ENCFF844LWD.bam released s3://encode-public/2018/01/12/c528348e-a373-44ab-87b0-e97727898ceb/ENCFF844LWD.bam ENCODE3 hg19 archived low read length ENCFF981RQY bam bam unfiltered alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 2 2_1 40 /files/ENCFF343MYT/, /files/ENCFF110MCL/ 1694484758 ENCODE Processing Pipeline 9acb74f60f1b44a51c646915730b466e https://www.encodeproject.org/files/ENCFF981RQY/@@download/ENCFF981RQY.bam released s3://encode-public/2020/10/27/938ea423-c173-46fa-b22a-675e21d2b922/ENCFF981RQY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF126URC bam bam alignments GRCh38 ENCSR483GYO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2016-10-31 ENCODE 200-400 1 1_1 40 /files/ENCFF521UDO/, /files/ENCFF110MCL/ 1254878011 ENCODE Processing Pipeline 26dd6c524c847987e2bc7f0081da257f https://www.encodeproject.org/files/ENCFF126URC/@@download/ENCFF126URC.bam released s3://encode-public/2020/10/27/ea4d8982-f69f-4ac9-83c9-ee503f05b3de/ENCFF126URC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF843WCR fastq fastq reads ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF079TRL/ 3120488224 Michael Snyder, Stanford 5ac4f6bd401eadf4ef1ebf8c8e7dcb00 SRA:SRR6212874 https://www.encodeproject.org/files/ENCFF843WCR/@@download/ENCFF843WCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/63fbdbef-d815-4315-a83e-ae2c1ae62d96/ENCFF843WCR.fastq.gz mild to moderate bottlenecking ENCFF079TRL fastq fastq reads ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF843WCR/ 3464681444 Michael Snyder, Stanford b2ace79f363e3d37730e45cb5ea96431 SRA:SRR6212874 https://www.encodeproject.org/files/ENCFF079TRL/@@download/ENCFF079TRL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/c7ea7486-d50a-42b8-8d9c-54e6e0120ed3/ENCFF079TRL.fastq.gz mild to moderate bottlenecking ENCFF411SRW bam bam unfiltered alignments hg19 ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF843WCR/, /files/ENCFF807MUK/, /files/ENCFF079TRL/ 6090037164 ENCODE Processing Pipeline d9cd4c991f79da8208ad1e87b6a0ad55 https://www.encodeproject.org/files/ENCFF411SRW/@@download/ENCFF411SRW.bam released s3://encode-public/2016/10/27/bbbc2824-8c5f-498e-a660-f34f8bd91701/ENCFF411SRW.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF584NWF bam bam alignments hg19 ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF843WCR/, /files/ENCFF807MUK/, /files/ENCFF079TRL/ 4100465782 ENCODE Processing Pipeline 5f4f7ac3200bcfdac04c67d619693b5a https://www.encodeproject.org/files/ENCFF584NWF/@@download/ENCFF584NWF.bam released s3://encode-public/2016/10/27/a2780df4-117e-4cc2-9935-8bba8553fa55/ENCFF584NWF.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF250FEG bam bam unfiltered alignments GRCh38 ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF843WCR/, /files/ENCFF079TRL/, /files/ENCFF643CGH/ 6099009201 ENCODE Processing Pipeline 6604ecd59103478749648170725333b1 https://www.encodeproject.org/files/ENCFF250FEG/@@download/ENCFF250FEG.bam released s3://encode-public/2016/10/27/72fdaeac-af11-4195-a3bb-5b67d1af285f/ENCFF250FEG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF990MMF bam bam alignments GRCh38 ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF843WCR/, /files/ENCFF079TRL/, /files/ENCFF643CGH/ 4106400701 ENCODE Processing Pipeline f92cfe4a8283445bb1daa75b7dd0ebd3 https://www.encodeproject.org/files/ENCFF990MMF/@@download/ENCFF990MMF.bam released s3://encode-public/2016/10/27/e43dd142-79da-421d-8032-198876055068/ENCFF990MMF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF423OAN bam bam alignments GRCh38 ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF843WCR/, /files/ENCFF079TRL/ 3996748809 ENCODE Processing Pipeline 43b13e1ddad03c418ca48df9ed6d4b4b https://www.encodeproject.org/files/ENCFF423OAN/@@download/ENCFF423OAN.bam released s3://encode-public/2020/06/03/9651c0bc-1d71-4b8d-87e1-cadaba7fdb42/ENCFF423OAN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF990XMO bam bam unfiltered alignments GRCh38 ENCSR224COZ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000995 uterus tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF843WCR/, /files/ENCFF079TRL/ 6236263064 ENCODE Processing Pipeline c33a5bccd25fe29e0845173a8b606627 https://www.encodeproject.org/files/ENCFF990XMO/@@download/ENCFF990XMO.bam released s3://encode-public/2020/06/03/c12226ea-d366-4153-99e9-ec17b22ca40f/ENCFF990XMO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF317LUD fastq fastq reads ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 single-ended 1160993361 Xiang-Dong Fu, UCSD 622d07d079ae1995f41aa4de036c78aa SRA:SRR14103624 https://www.encodeproject.org/files/ENCFF317LUD/@@download/ENCFF317LUD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/205f302e-a487-459f-ab86-02b64c1df2a9/ENCFF317LUD.fastq.gz low read length ENCFF338QTL fastq fastq reads ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 single-ended 1165984156 Xiang-Dong Fu, UCSD b05c9d170d9eb006788e5efd3704e2f4 SRA:SRR14103623 https://www.encodeproject.org/files/ENCFF338QTL/@@download/ENCFF338QTL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/02/11/de13afec-da2a-4947-9c86-3be300c740d1/ENCFF338QTL.fastq.gz low read length ENCFF502LLI bam bam alignments hg19 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF317LUD/, /files/ENCFF807MUK/ 1271111791 ENCODE Processing Pipeline b4b0fb63fb9444e2265e5fcf20b90369 https://www.encodeproject.org/files/ENCFF502LLI/@@download/ENCFF502LLI.bam released s3://encode-public/2016/02/26/b7219d9f-c323-4425-bfa2-af7a861d4b27/ENCFF502LLI.bam ENCODE3 hg19 archived low read length ENCFF325CNX bam bam alignments hg19 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF338QTL/ 1272140555 ENCODE Processing Pipeline 208ee28db19249bf7a02286877a2c310 https://www.encodeproject.org/files/ENCFF325CNX/@@download/ENCFF325CNX.bam released s3://encode-public/2016/02/26/69b6a632-c816-4c3d-9e7d-8e4d46ffc12e/ENCFF325CNX.bam ENCODE3 hg19 archived low read length ENCFF375EPE bam bam unfiltered alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF338QTL/ 1698550205 ENCODE Processing Pipeline 9061c72f0754a66bfd911058ea2438fd https://www.encodeproject.org/files/ENCFF375EPE/@@download/ENCFF375EPE.bam released s3://encode-public/2016/05/06/13089fd8-5b19-4f4e-b115-52126ab835f0/ENCFF375EPE.bam ENCODE3 GRCh38 archived low read length ENCFF663BEB bam bam unfiltered alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF317LUD/, /files/ENCFF643CGH/ 1690445816 ENCODE Processing Pipeline fa6a509406d40341c45521d27b67c522 https://www.encodeproject.org/files/ENCFF663BEB/@@download/ENCFF663BEB.bam released s3://encode-public/2016/05/06/ea2b422f-1e83-4c85-8cc1-6119606ce860/ENCFF663BEB.bam ENCODE3 GRCh38 archived low read length ENCFF345ODV bam bam alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF338QTL/ 1271019448 ENCODE Processing Pipeline bc95621c3d7fb13572c04dc97b4a7125 https://www.encodeproject.org/files/ENCFF345ODV/@@download/ENCFF345ODV.bam released s3://encode-public/2016/05/06/dbddf492-28f2-437d-96e2-53fa56c5fafe/ENCFF345ODV.bam ENCODE3 GRCh38 archived low read length ENCFF836GUS bam bam alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF317LUD/, /files/ENCFF643CGH/ 1269991067 ENCODE Processing Pipeline f8ba5d8387d7aeeafb0ae4e41d1ae6ff https://www.encodeproject.org/files/ENCFF836GUS/@@download/ENCFF836GUS.bam released s3://encode-public/2016/05/06/b53c2aba-0cd2-4470-8b07-82608bc19eee/ENCFF836GUS.bam ENCODE3 GRCh38 archived low read length ENCFF066PHM bam bam unfiltered alignments hg19 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF317LUD/, /files/ENCFF807MUK/ 1683948820 ENCODE Processing Pipeline 1c2fc801aee11d9fd645104bd63658ac https://www.encodeproject.org/files/ENCFF066PHM/@@download/ENCFF066PHM.bam released s3://encode-public/2018/01/12/3e5cb822-0870-4bc8-ac78-bce02473c7ea/ENCFF066PHM.bam ENCODE3 hg19 archived low read length ENCFF716PYI bam bam unfiltered alignments hg19 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF338QTL/ 1691832683 ENCODE Processing Pipeline a011627d7a715cd2cc7bcd545bea93f8 https://www.encodeproject.org/files/ENCFF716PYI/@@download/ENCFF716PYI.bam released s3://encode-public/2018/01/12/d56c6d40-1bcb-4d94-b581-d00b8cabfc40/ENCFF716PYI.bam ENCODE3 hg19 archived low read length ENCFF541ALB bam bam alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF317LUD/, /files/ENCFF110MCL/ 1312233124 ENCODE Processing Pipeline 6c0b1b1b7e56942bcaeaa1c67ba503a4 https://www.encodeproject.org/files/ENCFF541ALB/@@download/ENCFF541ALB.bam released s3://encode-public/2020/10/27/eb09ad0b-17ca-4beb-836e-3953e8341a22/ENCFF541ALB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF117YMH bam bam unfiltered alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 1 1_1 40 /files/ENCFF317LUD/, /files/ENCFF110MCL/ 1670026472 ENCODE Processing Pipeline e4f280758deb7f9587d9f53be8640d0a https://www.encodeproject.org/files/ENCFF117YMH/@@download/ENCFF117YMH.bam released s3://encode-public/2020/10/27/01edced8-5c1c-4e8b-8fc9-508f8c7be4d6/ENCFF117YMH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF784BXX bam bam unfiltered alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF338QTL/, /files/ENCFF110MCL/ 1678842038 ENCODE Processing Pipeline 5b297e6174bedc0a2cde44eeff328cec https://www.encodeproject.org/files/ENCFF784BXX/@@download/ENCFF784BXX.bam released s3://encode-public/2020/10/27/3d65b587-4ac1-467c-ade6-41f988306833/ENCFF784BXX.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF589CMT bam bam alignments GRCh38 ENCSR440JAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-02 ENCODE 200-400 2 2_1 40 /files/ENCFF338QTL/, /files/ENCFF110MCL/ 1312702097 ENCODE Processing Pipeline 7278598a0b7e74ca02a0655c1dee2e8e https://www.encodeproject.org/files/ENCFF589CMT/@@download/ENCFF589CMT.bam released s3://encode-public/2020/10/27/dc26c732-5ca7-409d-b48b-5af16c164beb/ENCFF589CMT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF291REP fastq fastq reads ENCSR414SRZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 single-ended 782321598 Kevin White, UChicago 0d780077eadb35bc1bbabc8ebef82eb4 https://www.encodeproject.org/files/ENCFF291REP/@@download/ENCFF291REP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/16/25a32746-8be4-4dd0-a6bd-2d9f9f0eb7c0/ENCFF291REP.fastq.gz ENCFF852KMF bam bam alignments dm3 ENCSR414SRZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF059UHX/, /files/ENCFF291REP/ 938823296 Kevin White, UChicago 9b1a936a1a2fecdd6509508a04ebb6d9 https://www.encodeproject.org/files/ENCFF852KMF/@@download/ENCFF852KMF.bam released s3://encode-public/2017/07/05/0dfa3108-898f-4478-be3f-6be670eeb76b/ENCFF852KMF.bam Lab custom dm3 archived ENCFF157YDS bam bam alignments dm6 ENCSR414SRZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 44 /files/ENCFF479RCH/, /files/ENCFF291REP/ 933034863 Kevin White, UChicago 6b3d6747c13ee6d4af6ebbd9791b3bb3 https://www.encodeproject.org/files/ENCFF157YDS/@@download/ENCFF157YDS.bam released s3://encode-public/2017/07/06/9c88f297-7efe-4003-8b75-8eddc9d013f7/ENCFF157YDS.bam Lab custom dm6 released ENCFF019JZC bigWig bigWig signal of unique reads dm3 ENCSR414SRZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF852KMF/ 15554909 Kevin White, UChicago fc8d694536952d2fa5f0445ca96639b1 https://www.encodeproject.org/files/ENCFF019JZC/@@download/ENCFF019JZC.bigWig released s3://encode-public/2017/07/06/10b79f66-fec5-49a4-a7fb-95a35f709edc/ENCFF019JZC.bigWig Lab custom dm3 archived ENCFF504CSU bigWig bigWig read-depth normalized signal dm3 ENCSR414SRZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF852KMF/ 15614112 Kevin White, UChicago 59cc69a6ec2633523e3e4ec9acd2a670 https://www.encodeproject.org/files/ENCFF504CSU/@@download/ENCFF504CSU.bigWig released s3://encode-public/2017/07/06/774bdc8c-5102-4e5d-a6c1-97515ca4883e/ENCFF504CSU.bigWig Lab custom dm3 archived ENCFF781XOB bigWig bigWig signal of unique reads dm6 ENCSR414SRZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF157YDS/ 17704445 Kevin White, UChicago 1f05549580a3d63090df42364b30165d https://www.encodeproject.org/files/ENCFF781XOB/@@download/ENCFF781XOB.bigWig released s3://encode-public/2017/07/07/d1562d02-8bd2-4154-b49c-a3ab6fd30829/ENCFF781XOB.bigWig Lab custom dm6 released ENCFF804BEJ bigWig bigWig read-depth normalized signal dm6 ENCSR414SRZ Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2017-09-28 modENCODE >200 1 1_1 /files/ENCFF157YDS/ 17771577 Kevin White, UChicago 6f49acba442ce082bc02576136531d5c https://www.encodeproject.org/files/ENCFF804BEJ/@@download/ENCFF804BEJ.bigWig released s3://encode-public/2017/07/07/1ef6141f-baf5-40bd-aab9-eba5e23b674d/ENCFF804BEJ.bigWig Lab custom dm6 released ENCFF586PGE fastq fastq reads ENCSR855EJR Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 44 single-ended 841056269 Kevin White, UChicago b8c9a269dc41406661d4b169a933c8f9 https://www.encodeproject.org/files/ENCFF586PGE/@@download/ENCFF586PGE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/12/15/f4117d4a-c6cd-4c51-a724-6e8867dc3462/ENCFF586PGE.fastq.gz missing external identifiers ENCFF326SGK bam bam alignments dm3 ENCSR855EJR Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 44 /files/ENCFF586PGE/, /files/ENCFF059UHX/ 1069855408 Kevin White, UChicago a7be20b1834f781fb8d08b51cc019f6b https://www.encodeproject.org/files/ENCFF326SGK/@@download/ENCFF326SGK.bam released s3://encode-public/2017/12/15/558f5941-9136-4eb6-a12e-3c2a5f38eefd/ENCFF326SGK.bam Lab custom dm3 archived missing external identifiers ENCFF663DTV bam bam alignments dm6 ENCSR855EJR Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 44 /files/ENCFF586PGE/, /files/ENCFF479RCH/ 1067184534 Kevin White, UChicago f49d912465dbe7fff08b05df58c1488c https://www.encodeproject.org/files/ENCFF663DTV/@@download/ENCFF663DTV.bam released s3://encode-public/2017/12/15/5b08ac82-a880-435d-acda-59028c4f7765/ENCFF663DTV.bam Lab custom dm6 released missing external identifiers ENCFF257YPO bigWig bigWig read-depth normalized signal dm3 ENCSR855EJR Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF326SGK/ 15268917 Kevin White, UChicago 32fef3e688a987b98010bac2d9a29fa3 https://www.encodeproject.org/files/ENCFF257YPO/@@download/ENCFF257YPO.bigWig released s3://encode-public/2017/12/18/e2d883c0-889b-4665-812d-27ba875fac24/ENCFF257YPO.bigWig Lab custom dm3 archived missing external identifiers ENCFF089NNV bigWig bigWig signal of unique reads dm6 ENCSR855EJR Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF663DTV/ 17205083 Kevin White, UChicago 44ec3d8b43eb9436a72fe5ca3daaeadb https://www.encodeproject.org/files/ENCFF089NNV/@@download/ENCFF089NNV.bigWig released s3://encode-public/2017/12/18/03edf37a-60d6-4654-99c4-60ee00464a55/ENCFF089NNV.bigWig Lab custom dm6 released missing external identifiers ENCFF945OPP bigWig bigWig signal of unique reads dm3 ENCSR855EJR Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF326SGK/ 15236019 Kevin White, UChicago bc17bfd43c8f8595ebbe4552682a203a https://www.encodeproject.org/files/ENCFF945OPP/@@download/ENCFF945OPP.bigWig released s3://encode-public/2017/12/18/8c3f09ac-0bbe-48dd-9c3f-44e74dc4df17/ENCFF945OPP.bigWig Lab custom dm3 archived missing external identifiers ENCFF889UTO bigWig bigWig read-depth normalized signal dm6 ENCSR855EJR Control ChIP-seq /fly-donors/ENCDO051PXX/ EFO:0005819 Kc167 cell line Drosophila melanogaster DNA 2017-12-21 modENCODE >200 1 1_1 /files/ENCFF663DTV/ 17243912 Kevin White, UChicago 343d27dc4fedafcb5ad6333053b2d1bd https://www.encodeproject.org/files/ENCFF889UTO/@@download/ENCFF889UTO.bigWig released s3://encode-public/2017/12/18/55867d15-2b37-46ac-81ec-eb0b5c6794b7/ENCFF889UTO.bigWig Lab custom dm6 released missing external identifiers ENCFF452YHP fastq fastq reads ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 103428225 Michael Snyder, Stanford f670534f4d56d4065d047d1a5656f305 https://www.encodeproject.org/files/ENCFF452YHP/@@download/ENCFF452YHP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fdfff605-c1d6-4e83-bac6-4a396d27191e/ENCFF452YHP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF653ITT fastq fastq reads ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 172068846 Michael Snyder, Stanford 6b52b0b0bf6f82c1e38bb62baceb11c2 https://www.encodeproject.org/files/ENCFF653ITT/@@download/ENCFF653ITT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e703f9a5-6b94-430b-9337-7bb61f320231/ENCFF653ITT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF949ZZD bam bam alignments ce10 ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF653ITT/, /files/ENCFF452YHP/, /files/ENCFF987UMF/ 361175691 Kevin White, UChicago 0f05487d423dd4f5f419f15f2d8900de https://www.encodeproject.org/files/ENCFF949ZZD/@@download/ENCFF949ZZD.bam released s3://encode-public/2016/10/18/a7be6b67-56bc-491f-8d05-06e7b871cdc5/ENCFF949ZZD.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF081YHM bam bam alignments ce11 ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF653ITT/, /files/ENCFF452YHP/, /files/ENCFF586MOL/ 361625056 Kevin White, UChicago b7194a493bc19adaaafebd62f5ab15cb https://www.encodeproject.org/files/ENCFF081YHM/@@download/ENCFF081YHM.bam released s3://encode-public/2016/10/19/09ced04c-92dd-4b10-83ba-ea8e0e0d6acb/ENCFF081YHM.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF231FWG bigWig bigWig read-depth normalized signal ce10 ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF949ZZD/ 10028016 Kevin White, UChicago 26a21e6dff3d05f9b0c3ba322aea3ee9 https://www.encodeproject.org/files/ENCFF231FWG/@@download/ENCFF231FWG.bigWig released s3://encode-public/2016/10/20/75534831-3752-4f2e-b3a1-88221df23887/ENCFF231FWG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF626TCQ bigWig bigWig signal of unique reads ce10 ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF949ZZD/ 10078684 Kevin White, UChicago 6a886d48bffb03fcf4d5f660c63aad19 https://www.encodeproject.org/files/ENCFF626TCQ/@@download/ENCFF626TCQ.bigWig released s3://encode-public/2016/10/20/009a3ddb-11d6-460b-b36f-31fc8637d761/ENCFF626TCQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF301QHW bigWig bigWig signal of unique reads ce11 ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF081YHM/ 10069685 Kevin White, UChicago c5e6f093da2c1d22b33beabb49a4a27f https://www.encodeproject.org/files/ENCFF301QHW/@@download/ENCFF301QHW.bigWig released s3://encode-public/2016/10/20/47c47fdc-faec-4a36-850c-61728e7e0f29/ENCFF301QHW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF738KRN bigWig bigWig read-depth normalized signal ce11 ENCSR694MIX Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF081YHM/ 10020878 Kevin White, UChicago 96fd6d6f8cad4776dd8e2cf4322c7996 https://www.encodeproject.org/files/ENCFF738KRN/@@download/ENCFF738KRN.bigWig released s3://encode-public/2016/10/20/7654e486-6d25-41ae-bbae-7de4146a1eb6/ENCFF738KRN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF286ECX fastq fastq reads ENCSR321TTR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1049505365 Richard Myers, HAIB 404d03299056f0228f7eb37fc76b5136 SRA:SRR5111436 https://www.encodeproject.org/files/ENCFF286ECX/@@download/ENCFF286ECX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/2fb803d2-4b0c-42a3-b9e5-1df1173515e7/ENCFF286ECX.fastq.gz ENCFF312MBC bam bam unfiltered alignments mm10 ENCSR321TTR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF286ECX/ 1158920133 ENCODE Processing Pipeline fed4d0a18a4eba3b5dd68c13f154dadb https://www.encodeproject.org/files/ENCFF312MBC/@@download/ENCFF312MBC.bam released s3://encode-public/2016/05/20/e17d5b73-d011-4373-bb6f-9e739037f2e9/ENCFF312MBC.bam ENCODE3 mm10 archived ENCFF363JGX bam bam alignments mm10 ENCSR321TTR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF286ECX/ 835706563 ENCODE Processing Pipeline b67da9b8b3316b492750e5e7372d1e80 https://www.encodeproject.org/files/ENCFF363JGX/@@download/ENCFF363JGX.bam released s3://encode-public/2016/05/20/bfd875bb-2293-464c-b30a-377977592059/ENCFF363JGX.bam ENCODE3 mm10 archived ENCFF865GET bam bam unfiltered alignments mm10 ENCSR321TTR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF286ECX/ 1160867105 ENCODE Processing Pipeline bdcc93dd298c1fc424db69657d17709f https://www.encodeproject.org/files/ENCFF865GET/@@download/ENCFF865GET.bam released s3://encode-public/2020/11/06/6cb98861-8dc5-470e-ad30-3d834006ae0e/ENCFF865GET.bam ENCODE4 v1.6.1 mm10 released ENCFF920ZML bam bam alignments mm10 ENCSR321TTR Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF286ECX/ 854697165 ENCODE Processing Pipeline 7de1e68eed8deae34946ea6499577eb5 https://www.encodeproject.org/files/ENCFF920ZML/@@download/ENCFF920ZML.bam released s3://encode-public/2020/11/06/c3fd9fed-90f7-44a2-b82b-745f129a375a/ENCFF920ZML.bam ENCODE4 v1.6.1 mm10 released ENCFF924EEL tagAlign tagAlign alignments hg19 ENCSR919WHB Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF760HHZ/ 156557358 Anshul Kundaje, Stanford 43b36603883c0a76800a5df89c7a3d32 https://www.encodeproject.org/files/ENCFF924EEL/@@download/ENCFF924EEL.tagAlign.gz archived s3://encode-public/2016/03/30/48872100-e6ff-4045-a9ae-323b4ba5b865/ENCFF924EEL.tagAlign.gz Lab custom hg19 archived low read length ENCFF694TXM bam bam redacted unfiltered alignments hg19 ENCSR919WHB Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF760HHZ/ 486615246 ENCODE Processing Pipeline efe914881a5c4873c417c89f8a882f65 https://www.encodeproject.org/files/ENCFF694TXM/@@download/ENCFF694TXM.bam released s3://encode-public/2018/01/24/c36b3d76-4a43-4352-abc9-8aefc98fc86d/ENCFF694TXM.bam ENCODE3 hg19 archived low read length ENCFF852THR bam bam redacted alignments hg19 ENCSR919WHB Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF760HHZ/ 301114535 ENCODE Processing Pipeline c42b324296153530bfe6c0c54e18dd41 https://www.encodeproject.org/files/ENCFF852THR/@@download/ENCFF852THR.bam released s3://encode-public/2018/01/24/7fd9a581-0638-45b2-ac89-d4216e601c38/ENCFF852THR.bam ENCODE3 hg19 archived low read length ENCFF335WGQ bam bam redacted unfiltered alignments GRCh38 ENCSR919WHB Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF760HHZ/ 491534218 ENCODE Processing Pipeline 5460b16d68eacc0691590f2d84184ce6 https://www.encodeproject.org/files/ENCFF335WGQ/@@download/ENCFF335WGQ.bam released s3://encode-public/2018/01/24/795b775b-0764-4053-82c7-51f95e5e64cc/ENCFF335WGQ.bam ENCODE3 GRCh38 archived low read length ENCFF950IVM bam bam redacted alignments GRCh38 ENCSR919WHB Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF760HHZ/ 301163573 ENCODE Processing Pipeline 6388f09a72e31e2e22d81b1fc9e13bb6 https://www.encodeproject.org/files/ENCFF950IVM/@@download/ENCFF950IVM.bam released s3://encode-public/2018/01/24/fe974506-305d-4ad1-bfd1-edcf3e6bff98/ENCFF950IVM.bam ENCODE3 GRCh38 archived low read length ENCFF893ADO bam bam redacted alignments GRCh38 ENCSR919WHB Control ChIP-seq /human-donors/ENCDO966YSM/ CL:0000897 CD4-positive, alpha-beta memory T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF760HHZ/, /files/ENCFF110MCL/ 1002215780 ENCODE Processing Pipeline 559edcc19adb0817de12c41414e88a0f https://www.encodeproject.org/files/ENCFF893ADO/@@download/ENCFF893ADO.bam released s3://encode-public/2021/01/27/16411d25-e133-44fa-a4c2-edcce03ee658/ENCFF893ADO.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF162MWS tagAlign tagAlign alignments hg19 ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 /files/ENCFF109VZH/, /files/ENCFF264VTF/, 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ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 single-ended 419398328 Zhiping Weng, UMass de5bd3577d2b22799d96be97ab7e0c59 SRA:SRR1067219 https://www.encodeproject.org/files/ENCFF883QVT/@@download/ENCFF883QVT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/801f560a-eb6a-4f29-b145-2d2f63b96405/ENCFF883QVT.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF735YED fastq fastq reads ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 single-ended 415927870 Zhiping Weng, UMass ed681d0da5cebc00807784c1fa2d5071 SRA:SRR1067393 https://www.encodeproject.org/files/ENCFF735YED/@@download/ENCFF735YED.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/e6d6246d-ec74-48c6-a75e-e6661101db59/ENCFF735YED.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF264VTF fastq fastq reads ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 single-ended 416295223 Zhiping Weng, UMass fd0e590a51915a868800371a4c6456d5 SRA:SRR1067115 https://www.encodeproject.org/files/ENCFF264VTF/@@download/ENCFF264VTF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/ea3af097-55ba-4b13-bd4a-f6d60511db3b/ENCFF264VTF.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF109VZH fastq fastq reads ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 single-ended 413182926 Zhiping Weng, UMass aaf0267460b48eef294b449154731699 SRA:SRR1067195 https://www.encodeproject.org/files/ENCFF109VZH/@@download/ENCFF109VZH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/e1cf1746-e9bd-45c5-a98b-ac5c15308153/ENCFF109VZH.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length ENCFF044ENO bam bam unfiltered alignments GRCh38 ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 /files/ENCFF735YED/, /files/ENCFF887JHP/, /files/ENCFF110MCL/, /files/ENCFF264VTF/, /files/ENCFF883QVT/, /files/ENCFF109VZH/ 2266480506 ENCODE Processing Pipeline d66e63046686786c14c1f7f5dfc93ecb https://www.encodeproject.org/files/ENCFF044ENO/@@download/ENCFF044ENO.bam released s3://encode-public/2020/10/08/b5bcf7a2-3040-4dd4-abf5-c521766f9b51/ENCFF044ENO.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF050CFH bam bam alignments GRCh38 ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 /files/ENCFF735YED/, /files/ENCFF887JHP/, /files/ENCFF110MCL/, /files/ENCFF264VTF/, /files/ENCFF883QVT/, /files/ENCFF109VZH/ 1470720804 ENCODE Processing Pipeline 461d7b350fd3f143e33667c18a074792 https://www.encodeproject.org/files/ENCFF050CFH/@@download/ENCFF050CFH.bam released s3://encode-public/2020/10/08/bc5a125f-cbea-40e3-846d-f92b5945b1a5/ENCFF050CFH.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length ENCFF995PCQ bam bam alignments hg19 ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 /files/ENCFF887JHP/, /files/ENCFF807MUK/, /files/ENCFF264VTF/, /files/ENCFF735YED/, /files/ENCFF109VZH/, /files/ENCFF883QVT/ 1366351128 ENCODE Processing Pipeline 6089538ebdb29456c2f574bf6e33c804 https://www.encodeproject.org/files/ENCFF995PCQ/@@download/ENCFF995PCQ.bam released s3://encode-public/2017/02/18/ee25e625-561c-45d3-ada4-c75c3e6fe364/ENCFF995PCQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF110WRU bam bam unfiltered alignments hg19 ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 /files/ENCFF887JHP/, /files/ENCFF807MUK/, /files/ENCFF264VTF/, /files/ENCFF735YED/, /files/ENCFF109VZH/, /files/ENCFF883QVT/ 2308508301 ENCODE Processing Pipeline 834745f0ec3cbd8579a240d4b3bae976 https://www.encodeproject.org/files/ENCFF110WRU/@@download/ENCFF110WRU.bam released s3://encode-public/2017/02/18/6cfc994c-5fe8-4cde-96c5-78b1aa56c861/ENCFF110WRU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF542OVE bam bam alignments GRCh38 ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 /files/ENCFF887JHP/, /files/ENCFF643CGH/, /files/ENCFF264VTF/, /files/ENCFF735YED/, /files/ENCFF109VZH/, /files/ENCFF883QVT/ 1366007039 ENCODE Processing Pipeline fd9379ac5fdea08a06736c5270ba65f9 https://www.encodeproject.org/files/ENCFF542OVE/@@download/ENCFF542OVE.bam released s3://encode-public/2017/02/18/b6232b6e-b11e-48d6-b13c-9cfef03d330f/ENCFF542OVE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF967YIL bam bam unfiltered alignments GRCh38 ENCSR290OKG Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_5 36 /files/ENCFF887JHP/, /files/ENCFF643CGH/, /files/ENCFF264VTF/, /files/ENCFF735YED/, /files/ENCFF109VZH/, /files/ENCFF883QVT/ 2326882603 ENCODE Processing Pipeline fa23953929a995cf550e58e61f4c7468 https://www.encodeproject.org/files/ENCFF967YIL/@@download/ENCFF967YIL.bam released s3://encode-public/2017/02/18/a599801a-6421-47ff-aa13-3b2925e8f1cd/ENCFF967YIL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length ENCFF082TNL fastq fastq reads ENCSR329VYL Control ChIP-seq /worm-donors/ENCDO972MYN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565939/'], '@type': ['Target', 'Item'], 'name': 'F52B5.7-celegans', 'label': 'F52B5.7', '@id': '/targets/F52B5.7-celegans/', 'title': 'F52B5.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4a3036d6-fa84-40b8-954c-118da927c1e2', 'status': 'released'} ce11 I 8308777 8340816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1416288719 Kevin White, UChicago cafc34eb728f93b3e900f87c4c039ea9 https://www.encodeproject.org/files/ENCFF082TNL/@@download/ENCFF082TNL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/367ab4e2-512c-4a26-aadb-a9463511dcda/ENCFF082TNL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF331PFR bam bam alignments ce10 ENCSR329VYL Control ChIP-seq /worm-donors/ENCDO972MYN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565939/'], '@type': ['Target', 'Item'], 'name': 'F52B5.7-celegans', 'label': 'F52B5.7', '@id': '/targets/F52B5.7-celegans/', 'title': 'F52B5.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4a3036d6-fa84-40b8-954c-118da927c1e2', 'status': 'released'} ce11 I 8308777 8340816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF082TNL/, /files/ENCFF987UMF/ 1870587990 Kevin White, UChicago 801bcb29542ced377cffe12cf05a836c https://www.encodeproject.org/files/ENCFF331PFR/@@download/ENCFF331PFR.bam released s3://encode-public/2016/10/04/bf17b5a5-c320-4d87-90d7-32ef26e3ec5f/ENCFF331PFR.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF640LXU bam bam alignments ce11 ENCSR329VYL Control ChIP-seq /worm-donors/ENCDO972MYN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565939/'], '@type': ['Target', 'Item'], 'name': 'F52B5.7-celegans', 'label': 'F52B5.7', '@id': '/targets/F52B5.7-celegans/', 'title': 'F52B5.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4a3036d6-fa84-40b8-954c-118da927c1e2', 'status': 'released'} ce11 I 8308777 8340816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF082TNL/, /files/ENCFF586MOL/ 1872174420 Kevin White, UChicago 4ad36646178523916317a653f5158bdf https://www.encodeproject.org/files/ENCFF640LXU/@@download/ENCFF640LXU.bam released s3://encode-public/2016/10/05/452e15f4-78a1-483a-9ef0-7a9f09d7d115/ENCFF640LXU.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF235BMQ bigWig bigWig signal of unique reads ce10 ENCSR329VYL Control ChIP-seq /worm-donors/ENCDO972MYN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565939/'], '@type': ['Target', 'Item'], 'name': 'F52B5.7-celegans', 'label': 'F52B5.7', '@id': '/targets/F52B5.7-celegans/', 'title': 'F52B5.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4a3036d6-fa84-40b8-954c-118da927c1e2', 'status': 'released'} ce11 I 8308777 8340816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF331PFR/ 9950045 Kevin White, UChicago 3eff4630b0fbe766306254023bbcea52 https://www.encodeproject.org/files/ENCFF235BMQ/@@download/ENCFF235BMQ.bigWig released s3://encode-public/2016/10/06/9686a39b-616d-4717-b5b9-ba686776c397/ENCFF235BMQ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF238WHE bigWig bigWig read-depth normalized signal ce10 ENCSR329VYL Control ChIP-seq /worm-donors/ENCDO972MYN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565939/'], '@type': ['Target', 'Item'], 'name': 'F52B5.7-celegans', 'label': 'F52B5.7', '@id': '/targets/F52B5.7-celegans/', 'title': 'F52B5.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4a3036d6-fa84-40b8-954c-118da927c1e2', 'status': 'released'} ce11 I 8308777 8340816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF331PFR/ 9988105 Kevin White, UChicago b6c5387efc45f2267ebfe68d2d40a146 https://www.encodeproject.org/files/ENCFF238WHE/@@download/ENCFF238WHE.bigWig released s3://encode-public/2016/10/06/6b32f5b7-26cc-4c65-b8b5-98513acdf5a6/ENCFF238WHE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF942JWP bigWig bigWig read-depth normalized signal ce11 ENCSR329VYL Control ChIP-seq /worm-donors/ENCDO972MYN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565939/'], '@type': ['Target', 'Item'], 'name': 'F52B5.7-celegans', 'label': 'F52B5.7', '@id': '/targets/F52B5.7-celegans/', 'title': 'F52B5.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4a3036d6-fa84-40b8-954c-118da927c1e2', 'status': 'released'} ce11 I 8308777 8340816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF640LXU/ 9988106 Kevin White, UChicago 55dc92f25902bc54f23e1fafbaf0876b https://www.encodeproject.org/files/ENCFF942JWP/@@download/ENCFF942JWP.bigWig released s3://encode-public/2016/10/06/4f31b94c-266d-40e6-8c91-bc8d82205fb6/ENCFF942JWP.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF872UGZ bigWig bigWig signal of unique reads ce11 ENCSR329VYL Control ChIP-seq /worm-donors/ENCDO972MYN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/3565939/'], '@type': ['Target', 'Item'], 'name': 'F52B5.7-celegans', 'label': 'F52B5.7', '@id': '/targets/F52B5.7-celegans/', 'title': 'F52B5.7 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '4a3036d6-fa84-40b8-954c-118da927c1e2', 'status': 'released'} ce11 I 8308777 8340816 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF640LXU/ 9950042 Kevin White, UChicago 4bee9d2dcbd35ee88a548df79d92a900 https://www.encodeproject.org/files/ENCFF872UGZ/@@download/ENCFF872UGZ.bigWig released s3://encode-public/2016/10/06/0d52b0b3-fd2a-41a9-874f-dc6fb248e336/ENCFF872UGZ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF896ZZC bam bam redacted unfiltered alignments hg19 ENCSR675ZDM Control ChIP-seq /human-donors/ENCDO646IOH/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF380YND/, /files/ENCFF807MUK/, /files/ENCFF298EHF/, /files/ENCFF202FHP/, /files/ENCFF564EUO/ 814894453 ENCODE Processing Pipeline 694e523538981b92895ea380d3ad5691 https://www.encodeproject.org/files/ENCFF896ZZC/@@download/ENCFF896ZZC.bam released s3://encode-public/2018/01/19/44391f75-caac-4d86-890f-43f58df7d20f/ENCFF896ZZC.bam ENCODE3 hg19 archived low read length ENCFF391MCZ bam bam redacted alignments hg19 ENCSR675ZDM Control ChIP-seq /human-donors/ENCDO646IOH/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF380YND/, /files/ENCFF807MUK/, /files/ENCFF298EHF/, /files/ENCFF202FHP/, /files/ENCFF564EUO/ 577460090 ENCODE Processing Pipeline f03bade34589cfdad62f5a40c8b421a9 https://www.encodeproject.org/files/ENCFF391MCZ/@@download/ENCFF391MCZ.bam released s3://encode-public/2018/01/19/9dda93c6-188c-4a47-970d-6b2afa0088ae/ENCFF391MCZ.bam ENCODE3 hg19 archived low read length ENCFF723VRP bam bam redacted unfiltered alignments GRCh38 ENCSR675ZDM Control ChIP-seq /human-donors/ENCDO646IOH/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF380YND/, /files/ENCFF643CGH/, /files/ENCFF298EHF/, /files/ENCFF202FHP/, /files/ENCFF564EUO/ 823310016 ENCODE Processing Pipeline 1eef94072186ca26b6c419bf1683e8c2 https://www.encodeproject.org/files/ENCFF723VRP/@@download/ENCFF723VRP.bam released s3://encode-public/2018/01/19/100207a7-5382-4f60-b85c-9020817d0c09/ENCFF723VRP.bam ENCODE3 GRCh38 archived low read length ENCFF307BLT bam bam redacted alignments GRCh38 ENCSR675ZDM Control ChIP-seq /human-donors/ENCDO646IOH/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF380YND/, /files/ENCFF643CGH/, /files/ENCFF298EHF/, /files/ENCFF202FHP/, /files/ENCFF564EUO/ 577487734 ENCODE Processing Pipeline 0a41d2126aceec2a6f8790f4d4fa4045 https://www.encodeproject.org/files/ENCFF307BLT/@@download/ENCFF307BLT.bam released s3://encode-public/2018/01/19/8bcd2e89-353c-486b-a878-97bad1255043/ENCFF307BLT.bam ENCODE3 GRCh38 archived low read length ENCFF967FJV bam bam redacted alignments GRCh38 ENCSR675ZDM Control ChIP-seq /human-donors/ENCDO646IOH/ UBERON:0002113 kidney tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF564EUO/, /files/ENCFF202FHP/, /files/ENCFF298EHF/, /files/ENCFF110MCL/, /files/ENCFF380YND/ 1760752286 ENCODE Processing Pipeline dd3e9e7b7c0fe20eeb5977be38f0e1ea https://www.encodeproject.org/files/ENCFF967FJV/@@download/ENCFF967FJV.bam released s3://encode-public/2021/01/27/12e88994-f16d-4162-a613-5c2c678cee94/ENCFF967FJV.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF481EPU fastq fastq reads ENCSR307FPW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 single-ended 383804260 Kevin White, UChicago f16b6116555dd71a6c3d67b62968211b https://www.encodeproject.org/files/ENCFF481EPU/@@download/ENCFF481EPU.fastq.gz Illumina Genome Analyzer /files/ENCFF481EPU/ released s3://encode-public/2017/12/27/2468bd1e-dbd3-452a-936f-47138aff34d1/ENCFF481EPU.fastq.gz ENCFF645WOW bam bam alignments dm3 ENCSR307FPW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF481EPU/, /files/ENCFF059UHX/ 421385159 Kevin White, UChicago 10f906f407d24a84b7ce950192a73da8 https://www.encodeproject.org/files/ENCFF645WOW/@@download/ENCFF645WOW.bam released s3://encode-public/2017/12/27/10f4eb87-f52f-4724-8222-156b8b2e25b0/ENCFF645WOW.bam Lab custom dm3 archived ENCFF924QKK bam bam alignments dm6 ENCSR307FPW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 36 /files/ENCFF481EPU/, /files/ENCFF479RCH/ 419807324 Kevin White, UChicago 30f58a52c9e3900c0a1c30e0c35542c2 https://www.encodeproject.org/files/ENCFF924QKK/@@download/ENCFF924QKK.bam released s3://encode-public/2017/12/27/b80880d0-fd78-4288-b911-8aa845fe24e8/ENCFF924QKK.bam Lab custom dm6 released ENCFF602JXI bigWig bigWig read-depth normalized signal dm3 ENCSR307FPW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF645WOW/ 15186049 Kevin White, UChicago 219c2c6225b24685aa4554be56a1fc70 https://www.encodeproject.org/files/ENCFF602JXI/@@download/ENCFF602JXI.bigWig released s3://encode-public/2017/12/28/e2bf352c-5122-402c-ae0c-9fdff52e7b12/ENCFF602JXI.bigWig Lab custom dm3 archived ENCFF949KFW bigWig bigWig signal of unique reads dm3 ENCSR307FPW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF645WOW/ 15224644 Kevin White, UChicago b5e4d2bc6855696fe4528e6f2baecfbc https://www.encodeproject.org/files/ENCFF949KFW/@@download/ENCFF949KFW.bigWig released s3://encode-public/2017/12/28/c57cdbf6-418e-461d-a838-3c83ee59db4c/ENCFF949KFW.bigWig Lab custom dm3 archived ENCFF131UPI bigWig bigWig read-depth normalized signal dm6 ENCSR307FPW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF924QKK/ 17390867 Kevin White, UChicago d730c47a2bb993680630088affb94589 https://www.encodeproject.org/files/ENCFF131UPI/@@download/ENCFF131UPI.bigWig released s3://encode-public/2017/12/28/3a8554ab-d1be-445b-9b3c-9df5f9277c7a/ENCFF131UPI.bigWig Lab custom dm6 released ENCFF380JNQ bigWig bigWig signal of unique reads dm6 ENCSR307FPW Control ChIP-seq /fly-donors/ENCDO655GHE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster DNA 2018-02-05 modENCODE >200 1 1_1 /files/ENCFF924QKK/ 17428335 Kevin White, UChicago db6e91599da2ec66dca185c2826d289f https://www.encodeproject.org/files/ENCFF380JNQ/@@download/ENCFF380JNQ.bigWig released s3://encode-public/2017/12/28/9fa6c777-1bb8-4ff2-adac-8f2013c9fe22/ENCFF380JNQ.bigWig Lab custom dm6 released ENCFF604UHT bam bam redacted unfiltered alignments GRCh38 ENCSR770VVH Control ChIP-seq /human-donors/ENCDO267ZBN/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 83 /files/ENCFF643CGH/, /files/ENCFF386PJA/ 236684312 ENCODE Processing Pipeline 24586192ea14d7812dc0c8751e6834db https://www.encodeproject.org/files/ENCFF604UHT/@@download/ENCFF604UHT.bam released s3://encode-public/2017/11/09/7accc44c-9ad1-4345-88f2-f88e0a743bf0/ENCFF604UHT.bam ENCODE3 GRCh38 archived ENCFF490IZD bam bam redacted alignments GRCh38 ENCSR770VVH Control ChIP-seq /human-donors/ENCDO267ZBN/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 83 /files/ENCFF643CGH/, /files/ENCFF386PJA/ 91391280 ENCODE Processing Pipeline 3eeac2bbc96619df34078a913bf8f849 https://www.encodeproject.org/files/ENCFF490IZD/@@download/ENCFF490IZD.bam released s3://encode-public/2017/11/09/83c5b54b-09db-4177-9edd-7bc8e3d3c1ba/ENCFF490IZD.bam ENCODE3 GRCh38 archived ENCFF047QGK bam bam redacted alignments hg19 ENCSR770VVH Control ChIP-seq /human-donors/ENCDO267ZBN/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 83 /files/ENCFF807MUK/, /files/ENCFF386PJA/ 90946584 ENCODE Processing Pipeline 8ea09a74ed38d6e1ebc718157e375047 https://www.encodeproject.org/files/ENCFF047QGK/@@download/ENCFF047QGK.bam released s3://encode-public/2018/01/20/2b290bef-2f40-4e2f-9535-eefde6c54bf8/ENCFF047QGK.bam ENCODE3 hg19 archived ENCFF141INB bam bam redacted unfiltered alignments hg19 ENCSR770VVH Control ChIP-seq /human-donors/ENCDO267ZBN/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 83 /files/ENCFF807MUK/, /files/ENCFF386PJA/ 231679836 ENCODE Processing Pipeline f2e8bd865d9f2f216b914640490a0181 https://www.encodeproject.org/files/ENCFF141INB/@@download/ENCFF141INB.bam released s3://encode-public/2018/01/20/261a0682-be1c-42cb-8ee9-5c745a536e00/ENCFF141INB.bam ENCODE3 hg19 archived ENCFF441USE bam bam redacted alignments GRCh38 ENCSR770VVH Control ChIP-seq /human-donors/ENCDO267ZBN/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 83 /files/ENCFF299PCT/, /files/ENCFF110MCL/ 140361501 ENCODE Processing Pipeline bd69776a142df6600896f7639bc2efa3 https://www.encodeproject.org/files/ENCFF441USE/@@download/ENCFF441USE.bam released s3://encode-public/2021/01/28/22ba36c2-ee11-47c6-bc34-2a59333ac22b/ENCFF441USE.bam ENCODE4 v1.7.0 GRCh38 released ENCFF976AMI bam bam redacted alignments GRCh38 ENCSR770VVH Control ChIP-seq /human-donors/ENCDO267ZBN/ UBERON:0000016 endocrine pancreas tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF299PCT/, /files/ENCFF110MCL/ 1810779708 ENCODE Processing Pipeline de6c58420a39ceee8b9408b9c2047aa4 https://www.encodeproject.org/files/ENCFF976AMI/@@download/ENCFF976AMI.bam released s3://encode-public/2021/02/12/672deb09-d7b5-4fd1-a86f-082be6476ccb/ENCFF976AMI.bam ENCODE4 v1.7.0 GRCh38 released ENCFF938ZRA bam bam unfiltered alignments hg19 ENCSR628ONI Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF247MLF/ 2012387597 ENCODE Processing Pipeline 3ebc09f6a762fc4a87d385fa93a7ff50 https://www.encodeproject.org/files/ENCFF938ZRA/@@download/ENCFF938ZRA.bam released s3://encode-public/2018/02/21/d18a6206-0b5d-43be-b1b8-d650ef9fd7bc/ENCFF938ZRA.bam ENCODE3 hg19 archived ENCFF247MLF fastq fastq reads ENCSR628ONI Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1809963192 Richard Myers, HAIB 1ed138c9c62993153697b5a2ccf92f15 SRA:SRR5339127 https://www.encodeproject.org/files/ENCFF247MLF/@@download/ENCFF247MLF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/1b18083d-0194-4052-9420-6c9a9c82911c/ENCFF247MLF.fastq.gz ENCFF871NUZ bam bam alignments hg19 ENCSR628ONI Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF247MLF/ 1463192942 ENCODE Processing Pipeline d72559435c25e5f464aa07b1f161217c https://www.encodeproject.org/files/ENCFF871NUZ/@@download/ENCFF871NUZ.bam released s3://encode-public/2016/01/15/20c18ecb-5a98-40b1-90af-6977566143e2/ENCFF871NUZ.bam ENCODE3 hg19 archived ENCFF580MZG bam bam unfiltered alignments GRCh38 ENCSR628ONI Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF247MLF/ 2021483935 ENCODE Processing Pipeline 89d225d131c91db3535420be8fc8bb4d https://www.encodeproject.org/files/ENCFF580MZG/@@download/ENCFF580MZG.bam released s3://encode-public/2016/05/06/da91005a-5082-4687-8997-e454cd3eec55/ENCFF580MZG.bam ENCODE3 GRCh38 archived ENCFF259AXY bam bam alignments GRCh38 ENCSR628ONI Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF247MLF/ 1463690184 ENCODE Processing Pipeline 01b23058b44b284cfec6b4f8d4f48d28 https://www.encodeproject.org/files/ENCFF259AXY/@@download/ENCFF259AXY.bam released s3://encode-public/2016/05/06/aaf120d1-06e7-4a1d-82b2-3c9d492bee03/ENCFF259AXY.bam ENCODE3 GRCh38 archived ENCFF781ITD bam bam unfiltered alignments GRCh38 ENCSR628ONI Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF247MLF/ 1980244729 ENCODE Processing Pipeline bae402a60458fec8549f9a479c416a0f https://www.encodeproject.org/files/ENCFF781ITD/@@download/ENCFF781ITD.bam released s3://encode-public/2020/06/25/cdaa41e6-72ac-43b2-84c3-ff65038853ae/ENCFF781ITD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF594IQP bam bam alignments GRCh38 ENCSR628ONI Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF247MLF/ 1573043996 ENCODE Processing Pipeline fff64dedf4550a2c4394426c5a610bca https://www.encodeproject.org/files/ENCFF594IQP/@@download/ENCFF594IQP.bam released s3://encode-public/2020/06/25/5bbce45c-90e9-40f7-9ea4-1c53a6946764/ENCFF594IQP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF310OFQ bigWig bigWig read-depth normalized signal dm6 ENCSR251JRS Control ChIP-seq /fly-donors/ENCDO472SGA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40164/'], '@type': ['Target', 'Item'], 'name': 'Deaf1-dmelanogaster', 'label': 'Deaf1', '@id': '/targets/Deaf1-dmelanogaster/', 'title': 'Deaf1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1528b2e-8c26-41bd-8cf2-542eea7db968', 'status': 'released'} dm3 3L 19812802 19833143 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF292HGE/ 17767327 Kevin White, UChicago 63a9f4b54646f3337f18a8dd2e98ee0e https://www.encodeproject.org/files/ENCFF310OFQ/@@download/ENCFF310OFQ.bigWig released s3://encode-public/2019/06/18/137e3d6f-05a7-4ac7-b4b3-6ac509ac85e6/ENCFF310OFQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF165EWR fastq fastq reads ENCSR251JRS Control ChIP-seq /fly-donors/ENCDO472SGA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40164/'], '@type': ['Target', 'Item'], 'name': 'Deaf1-dmelanogaster', 'label': 'Deaf1', '@id': '/targets/Deaf1-dmelanogaster/', 'title': 'Deaf1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1528b2e-8c26-41bd-8cf2-542eea7db968', 'status': 'released'} dm3 3L 19812802 19833143 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1009009908 Kevin White, UChicago 0844493d173733f8b17247a451862c2a https://www.encodeproject.org/files/ENCFF165EWR/@@download/ENCFF165EWR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/94f79dfb-060e-43f9-a34f-3ab5836d7baa/ENCFF165EWR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF292HGE bam bam alignments dm6 ENCSR251JRS Control ChIP-seq /fly-donors/ENCDO472SGA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40164/'], '@type': ['Target', 'Item'], 'name': 'Deaf1-dmelanogaster', 'label': 'Deaf1', '@id': '/targets/Deaf1-dmelanogaster/', 'title': 'Deaf1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1528b2e-8c26-41bd-8cf2-542eea7db968', 'status': 'released'} dm3 3L 19812802 19833143 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF165EWR/, /files/ENCFF479RCH/ 1348605098 Kevin White, UChicago c662d78bcdb1df54e16063d972ca28ac https://www.encodeproject.org/files/ENCFF292HGE/@@download/ENCFF292HGE.bam released s3://encode-public/2019/06/18/d6d43142-0c8c-456d-a415-80d53a7b2e26/ENCFF292HGE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF195LGS bigWig bigWig signal of unique reads dm6 ENCSR251JRS Control ChIP-seq /fly-donors/ENCDO472SGA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40164/'], '@type': ['Target', 'Item'], 'name': 'Deaf1-dmelanogaster', 'label': 'Deaf1', '@id': '/targets/Deaf1-dmelanogaster/', 'title': 'Deaf1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b1528b2e-8c26-41bd-8cf2-542eea7db968', 'status': 'released'} dm3 3L 19812802 19833143 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF292HGE/ 17728900 Kevin White, UChicago aea95487b76d319244ec633a8a56c874 https://www.encodeproject.org/files/ENCFF195LGS/@@download/ENCFF195LGS.bigWig released s3://encode-public/2019/06/18/ed76bf86-ef2c-4f9e-a0e3-9abf4b607acd/ENCFF195LGS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF580YTH bigWig bigWig read-depth normalized signal dm6 ENCSR072SDA Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF916JOF/ 17787433 Kevin White, UChicago ec7e0cf65ba78a839f55f5ef3f39b0ae https://www.encodeproject.org/files/ENCFF580YTH/@@download/ENCFF580YTH.bigWig released s3://encode-public/2019/06/18/b8fc4df5-a0fd-4d29-8658-94490e7b0410/ENCFF580YTH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF084ICQ fastq fastq reads ENCSR072SDA Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1067337669 Kevin White, UChicago 20ad25ed1c86ca4c5bdec47348c52c28 https://www.encodeproject.org/files/ENCFF084ICQ/@@download/ENCFF084ICQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/3f970f2e-3d0f-4645-9897-a938c589aaa7/ENCFF084ICQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF916JOF bam bam alignments dm6 ENCSR072SDA Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF084ICQ/, /files/ENCFF479RCH/ 1428187936 Kevin White, UChicago 4d3db4e2937f30a6ff7647061b60905f https://www.encodeproject.org/files/ENCFF916JOF/@@download/ENCFF916JOF.bam released s3://encode-public/2019/06/18/02ebfbc2-e5a9-4996-b7bf-d6d4a01cef11/ENCFF916JOF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF178SRS bigWig bigWig signal of unique reads dm6 ENCSR072SDA Control ChIP-seq /fly-donors/ENCDO682NWN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43152/'], '@type': ['Target', 'Item'], 'name': 'E(spl)mβ-HLH-dmelanogaster', 'label': 'E(spl)mβ-HLH', '@id': '/targets/E(spl)m%CE%B2-HLH-dmelanogaster/', 'title': 'E(spl)mβ-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '77379394-6229-4056-90bc-34d02802ef44', 'status': 'released'} dm3 3R 25995803 26016331 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF916JOF/ 17772703 Kevin White, UChicago 5d0a54b06ff6b32b825ceea302970847 https://www.encodeproject.org/files/ENCFF178SRS/@@download/ENCFF178SRS.bigWig released s3://encode-public/2019/06/18/f2bc70c1-6d3a-47aa-b615-3c53bc750183/ENCFF178SRS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF404JKZ tagAlign tagAlign alignments hg19 ENCSR604KTL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF161BJB/ 23158193 Anshul Kundaje, Stanford 682c5c10159ab775d92f341718815320 https://www.encodeproject.org/files/ENCFF404JKZ/@@download/ENCFF404JKZ.tagAlign.gz archived s3://encode-public/2016/03/30/8620e356-ab7e-4564-b48f-3851eff0676a/ENCFF404JKZ.tagAlign.gz Lab custom hg19 archived low read length extremely low read depth ENCFF161BJB fastq fastq reads ENCSR604KTL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 249976928 Zhiping Weng, UMass 616a0a3e9beead27dba984341ce53966 SRA:SRR1068415 https://www.encodeproject.org/files/ENCFF161BJB/@@download/ENCFF161BJB.fastq.gz Illumina Genome Analyzer II archived s3://encode-public/2016/10/19/4006e06f-3d87-4d10-ba61-aeb856848165/ENCFF161BJB.fastq.gz low read length extremely low read depth ENCFF016GSF bam bam alignments hg19 ENCSR604KTL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF161BJB/ 114212785 ENCODE Processing Pipeline ca3223267dd62050c0bb36fd6a935a7f https://www.encodeproject.org/files/ENCFF016GSF/@@download/ENCFF016GSF.bam archived s3://encode-public/2016/12/19/205d3a28-9f33-462d-a23c-824870c056b9/ENCFF016GSF.bam ENCODE3 hg19 released low read length extremely low read depth ENCFF746FLW bam bam unfiltered alignments hg19 ENCSR604KTL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF161BJB/ 282288869 ENCODE Processing Pipeline 4aa0f2fa4bddda67ffc1f399f2221cf6 https://www.encodeproject.org/files/ENCFF746FLW/@@download/ENCFF746FLW.bam archived s3://encode-public/2016/12/19/4dbc87e9-4c0c-4b19-85dd-b5805cf60cda/ENCFF746FLW.bam ENCODE3 hg19 released low read length extremely low read depth ENCFF403SHX bam bam unfiltered alignments GRCh38 ENCSR604KTL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF161BJB/ 283586412 ENCODE Processing Pipeline d1e2a28a269383c0502b280bee232d33 https://www.encodeproject.org/files/ENCFF403SHX/@@download/ENCFF403SHX.bam archived s3://encode-public/2016/12/19/0fa62bcb-6f66-4423-a80e-4ee5ece11990/ENCFF403SHX.bam ENCODE3 GRCh38 archived low read length extremely low read depth ENCFF228XLS bam bam alignments GRCh38 ENCSR604KTL Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF161BJB/ 114222374 ENCODE Processing Pipeline e029f5f1287da957867fa79865c29d4c https://www.encodeproject.org/files/ENCFF228XLS/@@download/ENCFF228XLS.bam archived s3://encode-public/2016/12/19/417987b6-8863-4550-ac63-e6c7266703e7/ENCFF228XLS.bam ENCODE3 GRCh38 archived low read length extremely low read depth ENCFF379LDB fastq fastq reads ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 204033196 Michael Snyder, Stanford 69e7fd63a2344951ab807c5b0dbffdbf https://www.encodeproject.org/files/ENCFF379LDB/@@download/ENCFF379LDB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/d6b863b6-bbb3-4d49-98bd-fd246fc199df/ENCFF379LDB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF934XZS fastq fastq reads ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 3 3_1 32 single-ended 237058210 Michael Snyder, Stanford 152238813f68a81e96f4a6d9be7e9038 https://www.encodeproject.org/files/ENCFF934XZS/@@download/ENCFF934XZS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/01/14/3a4da027-8c41-4742-abb0-a7bc881e6e2f/ENCFF934XZS.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF412DUP bam bam alignments ce10 ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 3 1_1, 3_1 32 /files/ENCFF379LDB/, /files/ENCFF934XZS/, /files/ENCFF987UMF/ 569115199 Kevin White, UChicago a389977229b0c6fd4f1a03464cf32daa https://www.encodeproject.org/files/ENCFF412DUP/@@download/ENCFF412DUP.bam released s3://encode-public/2016/10/18/214e0c2e-c178-469b-98f5-e61ecb1e4774/ENCFF412DUP.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF293EQT bam bam alignments ce11 ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 3 1_1, 3_1 32 /files/ENCFF379LDB/, /files/ENCFF934XZS/, /files/ENCFF586MOL/ 569713632 Kevin White, UChicago 986fbf8818cd184c693e8fab97a9fc62 https://www.encodeproject.org/files/ENCFF293EQT/@@download/ENCFF293EQT.bam released s3://encode-public/2016/10/19/75917e03-da2c-4d98-b8f0-46952df48c11/ENCFF293EQT.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF136QZE bigWig bigWig signal of unique reads ce10 ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 3 1_1, 3_1 /files/ENCFF412DUP/ 9996296 Kevin White, UChicago e301c8129694fa18c97823b8203cb6e3 https://www.encodeproject.org/files/ENCFF136QZE/@@download/ENCFF136QZE.bigWig released s3://encode-public/2016/10/20/e4b0e38f-8f5f-490b-9fa3-564580d8c955/ENCFF136QZE.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF310DJQ bigWig bigWig read-depth normalized signal ce10 ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 3 1_1, 3_1 /files/ENCFF412DUP/ 10060534 Kevin White, UChicago 744beee7a3e854416ad48be2cc4e38d4 https://www.encodeproject.org/files/ENCFF310DJQ/@@download/ENCFF310DJQ.bigWig released s3://encode-public/2016/10/20/3419bf65-a609-49ce-bb38-8ce62e0a3d00/ENCFF310DJQ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF467EIV bigWig bigWig signal of unique reads ce11 ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 3 1_1, 3_1 /files/ENCFF293EQT/ 9988274 Kevin White, UChicago af9bdb250440454761b3cca18d870290 https://www.encodeproject.org/files/ENCFF467EIV/@@download/ENCFF467EIV.bigWig released s3://encode-public/2016/10/21/2f6e9724-5216-47b7-b217-2a944578b10b/ENCFF467EIV.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF402RQU bigWig bigWig read-depth normalized signal ce11 ENCSR111HDC Control ChIP-seq /worm-donors/ENCDO864IHL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176506/'], '@type': ['Target', 'Item'], 'name': 'hpl-2-celegans', 'label': 'hpl-2', '@id': '/targets/hpl-2-celegans/', 'title': 'hpl-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd257c84d-0366-44b5-9f8e-f7b3569c7718', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 3 1_1, 3_1 /files/ENCFF293EQT/ 10049275 Kevin White, UChicago 9d5b6721fa07e3344ef05329b0fbd197 https://www.encodeproject.org/files/ENCFF402RQU/@@download/ENCFF402RQU.bigWig released s3://encode-public/2016/10/21/8e6d063e-ea36-4398-a49d-368e4604815d/ENCFF402RQU.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF046RIH fastq fastq reads ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1198641019 Bradley Bernstein, Broad 18498904f77213a967f67bf12d67a39b SRA:SRR5339020 https://www.encodeproject.org/files/ENCFF046RIH/@@download/ENCFF046RIH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/f322081b-0038-433b-9dce-7c8e71804f7f/ENCFF046RIH.fastq.gz ENCFF113LEI fastq fastq reads ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1184214237 Bradley Bernstein, Broad 04be445048f1e4b5d89fe76cbf98fd47 SRA:SRR5339021 https://www.encodeproject.org/files/ENCFF113LEI/@@download/ENCFF113LEI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/dfaed9ba-5b38-46a7-9a40-2b5624dde1a3/ENCFF113LEI.fastq.gz ENCFF390OFW bam bam alignments GRCh38 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF643CGH/ 1967585461 ENCODE Processing Pipeline 50fa2bd1910dd53d5ad9752bb8d48809 https://www.encodeproject.org/files/ENCFF390OFW/@@download/ENCFF390OFW.bam archived s3://encode-public/2016/10/27/dbc104c1-f9d8-4854-8d2e-796ddd6c1dee/ENCFF390OFW.bam ENCODE3 GRCh38 archived ENCFF333FDS bam bam unfiltered alignments GRCh38 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF643CGH/ 2331643769 ENCODE Processing Pipeline 612a18b0da904cc6e2f36680f395c905 https://www.encodeproject.org/files/ENCFF333FDS/@@download/ENCFF333FDS.bam archived s3://encode-public/2016/10/27/d23056f8-6a75-4abf-8a90-f62b951c2d5d/ENCFF333FDS.bam ENCODE3 GRCh38 archived ENCFF894AGG bam bam unfiltered alignments hg19 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF807MUK/ 2325133532 ENCODE Processing Pipeline afe4cc5af20f71857c5765c227e02410 https://www.encodeproject.org/files/ENCFF894AGG/@@download/ENCFF894AGG.bam archived s3://encode-public/2016/10/27/0fe7ea24-cc5a-4128-9ec8-3da15c251a77/ENCFF894AGG.bam ENCODE3 hg19 archived ENCFF775FWR bam bam alignments hg19 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF807MUK/ 1965189924 ENCODE Processing Pipeline d627b739b62cec9f8b55d59d00377ebc https://www.encodeproject.org/files/ENCFF775FWR/@@download/ENCFF775FWR.bam archived s3://encode-public/2016/10/27/e829886b-4664-46e7-80dc-c906b71be05a/ENCFF775FWR.bam ENCODE3 hg19 archived ENCFF855SLP fastq fastq reads ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 491218793 Bradley Bernstein, Broad 19bfbc40d616418a92a66700b57dd845 SRA:SRR5339022 https://www.encodeproject.org/files/ENCFF855SLP/@@download/ENCFF855SLP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/4d0f1b70-294c-4778-ae97-455f3772d0a9/ENCFF855SLP.fastq.gz ENCFF191LDB fastq fastq reads ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 488126564 Bradley Bernstein, Broad 2cbe611201df468a8d75f5676f7a942f SRA:SRR5339023 https://www.encodeproject.org/files/ENCFF191LDB/@@download/ENCFF191LDB.fastq.gz Illumina HiSeq 2500 /files/ENCFF113LEI/, /files/ENCFF046RIH/, /files/ENCFF855SLP/ released s3://encode-public/2017/01/24/7ef59120-bd4e-4d22-8fa6-cea855ec50f9/ENCFF191LDB.fastq.gz ENCFF485OXX bam bam unfiltered alignments hg19 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF191LDB/, /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF807MUK/, /files/ENCFF855SLP/ 3212621268 ENCODE Processing Pipeline 598b9d7c11b5fa9104555c7fc4e35bfb https://www.encodeproject.org/files/ENCFF485OXX/@@download/ENCFF485OXX.bam released s3://encode-public/2017/01/31/74fe82ec-c2dc-4783-b1ce-3c2943e6c292/ENCFF485OXX.bam ENCODE3 hg19 archived ENCFF190GAC bam bam alignments hg19 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF191LDB/, /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF807MUK/, /files/ENCFF855SLP/ 2693741498 ENCODE Processing Pipeline a004fd0bc48a835f4515cc788f726080 https://www.encodeproject.org/files/ENCFF190GAC/@@download/ENCFF190GAC.bam released s3://encode-public/2017/01/31/736a77af-e6b5-449a-9275-e6a5b178ed98/ENCFF190GAC.bam ENCODE3 hg19 archived ENCFF384MFA bam bam unfiltered alignments GRCh38 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF191LDB/, /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF643CGH/, /files/ENCFF855SLP/ 3221686137 ENCODE Processing Pipeline 9ed9388c8b291bd6eeac47dbad7f1be1 https://www.encodeproject.org/files/ENCFF384MFA/@@download/ENCFF384MFA.bam released s3://encode-public/2017/01/31/0b8dbaa4-e182-4be8-a94f-d7418017bc10/ENCFF384MFA.bam ENCODE3 GRCh38 archived ENCFF413FRL bam bam alignments GRCh38 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF191LDB/, /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF643CGH/, /files/ENCFF855SLP/ 2697204692 ENCODE Processing Pipeline 40ab9de1eff1a47a122c6a71ac3d509e https://www.encodeproject.org/files/ENCFF413FRL/@@download/ENCFF413FRL.bam released s3://encode-public/2017/01/31/c17191d3-058a-4967-bf00-445c70ec6a5a/ENCFF413FRL.bam ENCODE3 GRCh38 archived ENCFF983NGM bam bam unfiltered alignments GRCh38 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF110MCL/, /files/ENCFF191LDB/, /files/ENCFF855SLP/ 3261282123 ENCODE Processing Pipeline 716dd726199d9a4ca279c615a872a8e2 https://www.encodeproject.org/files/ENCFF983NGM/@@download/ENCFF983NGM.bam released s3://encode-public/2020/08/20/2e576512-7c86-41f3-a1c7-1a317b747829/ENCFF983NGM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF162MQL bam bam alignments GRCh38 ENCSR620XWM Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF046RIH/, /files/ENCFF113LEI/, /files/ENCFF110MCL/, /files/ENCFF191LDB/, /files/ENCFF855SLP/ 2762764674 ENCODE Processing Pipeline 2922b1953427ab5d9b22ddcffb2ccc6b https://www.encodeproject.org/files/ENCFF162MQL/@@download/ENCFF162MQL.bam released s3://encode-public/2020/08/20/bee6e524-9f02-4367-b8ff-f84ba0bd0770/ENCFF162MQL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF804IFB bigWig bigWig read-depth normalized signal dm6 ENCSR749JEF Control ChIP-seq /fly-donors/ENCDO631NGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41087/'], '@type': ['Target', 'Item'], 'name': 'Rel-dmelanogaster', 'label': 'Rel', '@id': '/targets/Rel-dmelanogaster/', 'title': 'Rel (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c6ff3d8c-f816-4450-88bc-c5e371c74002', 'status': 'released'} dm3 3R 4864625 4885109 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF671WWX/ 17819793 Kevin White, UChicago 511839c69bb47d80f1120e16fd927166 https://www.encodeproject.org/files/ENCFF804IFB/@@download/ENCFF804IFB.bigWig released s3://encode-public/2019/06/18/a1050600-0564-4b68-b39b-775caf0f4b82/ENCFF804IFB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF396RUJ fastq fastq reads ENCSR749JEF Control ChIP-seq /fly-donors/ENCDO631NGF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51385/'], '@type': ['Target', 'Item'], 'name': 'ZNF589-human', 'label': 'ZNF589', '@id': '/targets/ZNF589-human/', 'title': 'ZNF589 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0982e573-fea7-48a4-b2c8-d231ca958faf', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF373VKP/ 1109840197 ENCODE Processing Pipeline 3f9f93b1fa3fca23aee2778f98484484 https://www.encodeproject.org/files/ENCFF065IKL/@@download/ENCFF065IKL.bam released s3://encode-public/2018/02/22/e20a75e4-a6bd-4cc8-9c54-318931cec41f/ENCFF065IKL.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF373VKP fastq fastq reads ENCSR606XES Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51385/'], '@type': ['Target', 'Item'], 'name': 'ZNF589-human', 'label': 'ZNF589', '@id': '/targets/ZNF589-human/', 'title': 'ZNF589 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0982e573-fea7-48a4-b2c8-d231ca958faf', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1021970774 Kevin White, UChicago a96f532650bdddaa3624e8a34a798a6d SRA:SRR6213086 https://www.encodeproject.org/files/ENCFF373VKP/@@download/ENCFF373VKP.fastq.gz Illumina HiSeq 2000 /files/ENCFF728HNA/ released s3://encode-public/2016/03/14/7f2c6eba-d420-4efa-82c2-6aad5f379a62/ENCFF373VKP.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF743HYF bam bam alignments hg19 ENCSR606XES Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51385/'], '@type': ['Target', 'Item'], 'name': 'ZNF589-human', 'label': 'ZNF589', '@id': '/targets/ZNF589-human/', 'title': 'ZNF589 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0982e573-fea7-48a4-b2c8-d231ca958faf', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF807MUK/, /files/ENCFF373VKP/ 878834345 ENCODE Processing Pipeline 21715a408a199f10f5c7caed191265bf https://www.encodeproject.org/files/ENCFF743HYF/@@download/ENCFF743HYF.bam released s3://encode-public/2016/04/23/aeb040f1-eee2-4edd-86a5-440c009af189/ENCFF743HYF.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF646GDE bam bam unfiltered alignments GRCh38 ENCSR606XES Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51385/'], '@type': ['Target', 'Item'], 'name': 'ZNF589-human', 'label': 'ZNF589', '@id': '/targets/ZNF589-human/', 'title': 'ZNF589 (Homo sapiens)', 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ENCSR606XES Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51385/'], '@type': ['Target', 'Item'], 'name': 'ZNF589-human', 'label': 'ZNF589', '@id': '/targets/ZNF589-human/', 'title': 'ZNF589 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0982e573-fea7-48a4-b2c8-d231ca958faf', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF373VKP/ 927339396 ENCODE Processing Pipeline 959216b3d9cf5ae2fa4dbbcd72c3677c https://www.encodeproject.org/files/ENCFF217XIJ/@@download/ENCFF217XIJ.bam released s3://encode-public/2020/10/27/f649fcc7-1432-48ba-900d-4cdf6ee425d1/ENCFF217XIJ.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF683SVG bam bam unfiltered alignments hg19 ENCSR226ULX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF105CNG/, /files/ENCFF807MUK/ 1213383083 ENCODE Processing Pipeline 81b38eb949afda8e4bcff2aabb0f9e35 https://www.encodeproject.org/files/ENCFF683SVG/@@download/ENCFF683SVG.bam released s3://encode-public/2018/02/22/9521d243-37bf-4a74-9925-e527eb239475/ENCFF683SVG.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF105CNG fastq fastq reads ENCSR226ULX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 1118952020 Richard Myers, HAIB a81a5b275455be7fa5ba0502a5d6fe8c SRA:SRR5331453 https://www.encodeproject.org/files/ENCFF105CNG/@@download/ENCFF105CNG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/01353fbf-144f-4e93-b0bf-3d0909770736/ENCFF105CNG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF508NJF bam bam unfiltered alignments GRCh38 ENCSR226ULX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF105CNG/, /files/ENCFF643CGH/ 1216483726 ENCODE Processing Pipeline 832f92b738998970f661e4ce4de58b8e https://www.encodeproject.org/files/ENCFF508NJF/@@download/ENCFF508NJF.bam released s3://encode-public/2016/05/06/5d187960-db85-47f9-b9d8-ad988b182267/ENCFF508NJF.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF750GYK bam bam alignments GRCh38 ENCSR226ULX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF105CNG/, /files/ENCFF643CGH/ 933198908 ENCODE Processing Pipeline a471d77c22bb50dd5907a9b804322b70 https://www.encodeproject.org/files/ENCFF750GYK/@@download/ENCFF750GYK.bam released s3://encode-public/2016/05/06/46c33ba9-076a-4fb4-9c88-9804b7c387c2/ENCFF750GYK.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF231YLU bam bam alignments hg19 ENCSR226ULX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF105CNG/, /files/ENCFF807MUK/ 933230212 ENCODE Processing Pipeline d7a41931253b12cb6da69f5a625c11e9 https://www.encodeproject.org/files/ENCFF231YLU/@@download/ENCFF231YLU.bam released s3://encode-public/2016/05/07/c299ab94-c992-4100-b9b6-79f01d8dece6/ENCFF231YLU.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF799KFX bam bam unfiltered alignments GRCh38 ENCSR226ULX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF105CNG/ 1214359485 ENCODE Processing Pipeline 7bba83f0a2ee3f209e8f2cf785295a51 https://www.encodeproject.org/files/ENCFF799KFX/@@download/ENCFF799KFX.bam released s3://encode-public/2020/06/06/3dcefec1-a54a-4251-8f3c-717c64af9ebb/ENCFF799KFX.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF558MON bam bam alignments GRCh38 ENCSR226ULX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF105CNG/ 975895143 ENCODE Processing Pipeline 24099a865a0ee728a0bd4d3529577964 https://www.encodeproject.org/files/ENCFF558MON/@@download/ENCFF558MON.bam released s3://encode-public/2020/06/06/25300277-7201-4f7b-8ce6-eae80ec8d3c4/ENCFF558MON.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF136JCQ fastq fastq reads ENCSR313HFF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 3580474157 Richard Myers, HAIB a9647090cacb7d1351f3c6e123bc3b0d SRA:SRR14104453 https://www.encodeproject.org/files/ENCFF136JCQ/@@download/ENCFF136JCQ.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/07/31/480077c3-afa4-42f2-aa53-948d672a0102/ENCFF136JCQ.fastq.gz ENCFF163VDO bam bam alignments GRCh38 ENCSR313HFF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF136JCQ/ 1836054433 ENCODE Processing Pipeline 55f35f49124401fe858a11150a12b9ad https://www.encodeproject.org/files/ENCFF163VDO/@@download/ENCFF163VDO.bam released s3://encode-public/2020/04/20/43aad7b0-5ebb-4497-b000-069779c5cad0/ENCFF163VDO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF569LLZ bam bam unfiltered alignments GRCh38 ENCSR313HFF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF136JCQ/ 3155839464 ENCODE Processing Pipeline f9a7c883dd765042a5ef00604636b0cc https://www.encodeproject.org/files/ENCFF569LLZ/@@download/ENCFF569LLZ.bam released s3://encode-public/2020/04/20/b0c0750f-e496-457a-b4bc-1a387498a587/ENCFF569LLZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF405FPD tagAlign tagAlign alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF602MTV/ 169411696 Anshul Kundaje, Stanford 8a603cbe1ed3c061ea1aec4ebb2eac25 https://www.encodeproject.org/files/ENCFF405FPD/@@download/ENCFF405FPD.tagAlign.gz archived s3://encode-public/2016/03/30/e3d7835f-3738-48d4-93ca-458d0d6aa7eb/ENCFF405FPD.tagAlign.gz Lab custom hg19 archived low read length ENCFF053BYJ tagAlign tagAlign alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 /files/ENCFF612SKD/ 151177485 Anshul Kundaje, Stanford 9befb7007f8a50c2f36e2979cc7feef2 https://www.encodeproject.org/files/ENCFF053BYJ/@@download/ENCFF053BYJ.tagAlign.gz archived s3://encode-public/2016/03/30/2915455e-9d09-4f7f-be50-3032617900e1/ENCFF053BYJ.tagAlign.gz Lab custom hg19 archived low read length ENCFF458UJT tagAlign tagAlign alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF482QHJ/ 188292872 Anshul Kundaje, Stanford 7b3db1803ee1d73fb72c4a3457782aa1 https://www.encodeproject.org/files/ENCFF458UJT/@@download/ENCFF458UJT.tagAlign.gz archived s3://encode-public/2016/03/30/16e513f9-ced3-4d8a-aefb-c21ba49852dc/ENCFF458UJT.tagAlign.gz Lab custom hg19 archived low read length ENCFF951OKM bam bam redacted alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF612SKD/ 296048045 ENCODE Processing Pipeline af1bb154fb186a72e40ed7a2d2d41a9d https://www.encodeproject.org/files/ENCFF951OKM/@@download/ENCFF951OKM.bam released s3://encode-public/2018/01/25/386842fc-221b-4457-a4af-ff8f2251d53d/ENCFF951OKM.bam ENCODE3 hg19 archived low read length ENCFF336LLT bam bam redacted unfiltered alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF612SKD/ 430064773 ENCODE Processing Pipeline f40123a4fc50305cdd5d41af7b1af37f https://www.encodeproject.org/files/ENCFF336LLT/@@download/ENCFF336LLT.bam released s3://encode-public/2018/01/25/bf17b86d-7a64-45d2-8906-6ef0b77cf06f/ENCFF336LLT.bam ENCODE3 hg19 archived low read length ENCFF850LRC bam bam redacted unfiltered alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF602MTV/ 478323159 ENCODE Processing Pipeline 230b8c62ec62d62c5d7aab79f8d3a5f3 https://www.encodeproject.org/files/ENCFF850LRC/@@download/ENCFF850LRC.bam released s3://encode-public/2018/01/25/a9374861-a8ad-46d3-988a-a27bc68aa4ee/ENCFF850LRC.bam ENCODE3 hg19 archived low read length ENCFF337JNW bam bam redacted alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF602MTV/ 329629525 ENCODE Processing Pipeline d0669fe2de30d4a53ea80971ed9546f0 https://www.encodeproject.org/files/ENCFF337JNW/@@download/ENCFF337JNW.bam released s3://encode-public/2018/01/25/f5927369-3e9f-4498-a904-6e750779aff7/ENCFF337JNW.bam ENCODE3 hg19 archived low read length ENCFF215SEW bam bam redacted alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF482QHJ/ 353978758 ENCODE Processing Pipeline 6a144a785f9b49821a932b5113e846ae https://www.encodeproject.org/files/ENCFF215SEW/@@download/ENCFF215SEW.bam released s3://encode-public/2018/01/25/dcf06954-3a03-4793-8f3a-4b3888a51c8b/ENCFF215SEW.bam ENCODE3 hg19 archived low read length ENCFF986TJH bam bam redacted unfiltered alignments hg19 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF482QHJ/ 484380479 ENCODE Processing Pipeline d2ac72f483f734fe7ab22f25bd660b43 https://www.encodeproject.org/files/ENCFF986TJH/@@download/ENCFF986TJH.bam released s3://encode-public/2018/01/25/70aea1fe-e0d9-4d88-a0bc-f8b8aa3d3614/ENCFF986TJH.bam ENCODE3 hg19 archived low read length ENCFF007BRF bam bam redacted unfiltered alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF612SKD/ 433310836 ENCODE Processing Pipeline bbab3a7d42e7f9564c4c3ceb38097dbb https://www.encodeproject.org/files/ENCFF007BRF/@@download/ENCFF007BRF.bam released s3://encode-public/2018/01/25/8495de5d-7425-4252-a686-4771bc181ff5/ENCFF007BRF.bam ENCODE3 GRCh38 archived low read length ENCFF616NTX bam bam redacted unfiltered alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF602MTV/ 482168430 ENCODE Processing Pipeline 99195128e5ea969b386b7e43cf6ce635 https://www.encodeproject.org/files/ENCFF616NTX/@@download/ENCFF616NTX.bam released s3://encode-public/2018/01/25/da5a8997-9be6-418b-b895-f77453554c24/ENCFF616NTX.bam ENCODE3 GRCh38 archived low read length ENCFF052QKS bam bam redacted alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF612SKD/ 295965776 ENCODE Processing Pipeline f4cbfae6718bb7de8862a89c6e2c2c98 https://www.encodeproject.org/files/ENCFF052QKS/@@download/ENCFF052QKS.bam released s3://encode-public/2018/01/25/d14e533e-c562-41dd-9d4b-daba1f87ab67/ENCFF052QKS.bam ENCODE3 GRCh38 archived low read length ENCFF300CMR bam bam redacted alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF482QHJ/ 353636645 ENCODE Processing Pipeline 601e51e562ee952c667c5efce6166f5b https://www.encodeproject.org/files/ENCFF300CMR/@@download/ENCFF300CMR.bam released s3://encode-public/2018/01/25/1d4e747c-73fd-4a08-b0b7-194e7ff58d92/ENCFF300CMR.bam ENCODE3 GRCh38 archived low read length ENCFF295ZIS bam bam redacted alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF602MTV/ 329550347 ENCODE Processing Pipeline 613512e0f51ae281a0ee0e66a4ebe194 https://www.encodeproject.org/files/ENCFF295ZIS/@@download/ENCFF295ZIS.bam released s3://encode-public/2018/01/25/53ca28eb-2b33-4ace-9532-4ea2177475e7/ENCFF295ZIS.bam ENCODE3 GRCh38 archived low read length ENCFF459XWI bam bam redacted unfiltered alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF482QHJ/ 487562671 ENCODE Processing Pipeline f31bfeff7b7860d509a8a2e5e3f2b6f0 https://www.encodeproject.org/files/ENCFF459XWI/@@download/ENCFF459XWI.bam released s3://encode-public/2018/01/25/b71d615d-738b-43ba-b0e0-4b1083b05d59/ENCFF459XWI.bam ENCODE3 GRCh38 archived low read length ENCFF023BCI bam bam redacted alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF612SKD/, /files/ENCFF110MCL/ 935714511 ENCODE Processing Pipeline c051b0dcc37c22832dcbc62e3fed915a https://www.encodeproject.org/files/ENCFF023BCI/@@download/ENCFF023BCI.bam released s3://encode-public/2021/01/27/a47e2306-b46e-42f0-9e92-94f5fbf83708/ENCFF023BCI.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF929QPD bam bam redacted alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF482QHJ/, /files/ENCFF110MCL/ 1122578566 ENCODE Processing Pipeline 3d44bf425c3bcf10720d5ed4a232a0b0 https://www.encodeproject.org/files/ENCFF929QPD/@@download/ENCFF929QPD.bam released s3://encode-public/2021/01/27/7ddbccc3-172a-45ff-9b28-eb7873a54a99/ENCFF929QPD.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF236GZV bam bam redacted alignments GRCh38 ENCSR838JUD Control ChIP-seq /human-donors/ENCDO243GQK/ CL:0000594 skeletal muscle satellite cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF602MTV/ 1084552225 ENCODE Processing Pipeline 7c65df7d0345a483cb9099e86ff3188a https://www.encodeproject.org/files/ENCFF236GZV/@@download/ENCFF236GZV.bam released s3://encode-public/2021/01/27/3c8e73eb-f393-407e-8f03-f04d3656be7b/ENCFF236GZV.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF795YVZ bam bam redacted unfiltered alignments GRCh38 ENCSR768ZZH Control ChIP-seq /human-donors/ENCDO438LRD/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF779FUF/ 738637462 ENCODE Processing Pipeline ba2960b13ec74e517c4cf6887b2fbc35 https://www.encodeproject.org/files/ENCFF795YVZ/@@download/ENCFF795YVZ.bam released s3://encode-public/2018/01/19/6555f44b-09ff-4943-9f30-a9fb6b4a0e4f/ENCFF795YVZ.bam ENCODE3 GRCh38 archived low read length ENCFF376FQJ bam bam redacted unfiltered alignments hg19 ENCSR768ZZH Control ChIP-seq /human-donors/ENCDO438LRD/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF779FUF/ 731169705 ENCODE Processing Pipeline 9ba4dced3a87ee1eecce645cbc0263ee https://www.encodeproject.org/files/ENCFF376FQJ/@@download/ENCFF376FQJ.bam released s3://encode-public/2018/01/19/e6d7eddd-6ae7-411e-ad97-60c6c9291dae/ENCFF376FQJ.bam ENCODE3 hg19 archived low read length ENCFF677YDK bam bam redacted alignments GRCh38 ENCSR768ZZH Control ChIP-seq /human-donors/ENCDO438LRD/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF779FUF/ 510156874 ENCODE Processing Pipeline 4bd5836fb0ad744de27ad65531fea0b9 https://www.encodeproject.org/files/ENCFF677YDK/@@download/ENCFF677YDK.bam released s3://encode-public/2018/01/19/11acae8f-3e71-441d-931c-67894dfa98ba/ENCFF677YDK.bam ENCODE3 GRCh38 archived low read length ENCFF531LJQ bam bam redacted alignments hg19 ENCSR768ZZH Control ChIP-seq /human-donors/ENCDO438LRD/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF779FUF/ 510192495 ENCODE Processing Pipeline fb16d40921618e3da311a3be75c41a9f https://www.encodeproject.org/files/ENCFF531LJQ/@@download/ENCFF531LJQ.bam released s3://encode-public/2018/01/19/cc1a6d18-4b50-4c3e-9639-19bb9ffb4c54/ENCFF531LJQ.bam ENCODE3 hg19 archived low read length ENCFF375RUE bam bam redacted alignments GRCh38 ENCSR768ZZH Control ChIP-seq /human-donors/ENCDO438LRD/ CL:0000236 B cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF779FUF/, /files/ENCFF110MCL/ 1638747713 ENCODE Processing Pipeline c118a9d6367dd89e4247d46802e41610 https://www.encodeproject.org/files/ENCFF375RUE/@@download/ENCFF375RUE.bam released s3://encode-public/2021/01/27/5800b86f-cd8c-4f5f-bc17-9f12983b8a46/ENCFF375RUE.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF657PTT fastq fastq reads ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF946FRP/ 3698130566 Richard Myers, HAIB dae77d182ff658dfd91d89e683a59f93 SRA:SRR6212944 https://www.encodeproject.org/files/ENCFF657PTT/@@download/ENCFF657PTT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/b097e45d-671a-44c7-8ecd-4c19009b94a9/ENCFF657PTT.fastq.gz ENCFF946FRP fastq fastq reads ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF657PTT/ 3808336027 Richard Myers, HAIB 16c3243e4ddbc69a3f6a82752ac8cf77 SRA:SRR6212944 https://www.encodeproject.org/files/ENCFF946FRP/@@download/ENCFF946FRP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/4b7ac6ed-54a5-4199-b834-6ee3aa7fc31c/ENCFF946FRP.fastq.gz ENCFF419MZT bam bam unfiltered alignments hg19 ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF657PTT/, /files/ENCFF946FRP/, /files/ENCFF807MUK/ 8604141882 ENCODE Processing Pipeline dd425fc606c086c8af90baecead8f2aa https://www.encodeproject.org/files/ENCFF419MZT/@@download/ENCFF419MZT.bam released s3://encode-public/2017/02/02/91bd0902-b389-4900-ad1d-07f0cb5f36fc/ENCFF419MZT.bam ENCODE3 hg19 archived ENCFF651XBB bam bam alignments hg19 ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF657PTT/, /files/ENCFF946FRP/, /files/ENCFF807MUK/ 5317333875 ENCODE Processing Pipeline 4776476136cdefd57eb99dd8e6090b9e https://www.encodeproject.org/files/ENCFF651XBB/@@download/ENCFF651XBB.bam released s3://encode-public/2017/02/02/d4b0e0af-fb18-42ee-8d04-356fedb7efc8/ENCFF651XBB.bam ENCODE3 hg19 archived ENCFF732BTH bam bam alignments GRCh38 ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF657PTT/, /files/ENCFF946FRP/, /files/ENCFF643CGH/ 5327767451 ENCODE Processing Pipeline d8ed11bf6f788091b0872288ad283c45 https://www.encodeproject.org/files/ENCFF732BTH/@@download/ENCFF732BTH.bam released s3://encode-public/2017/02/02/080fc49e-012a-4329-ab46-6652457fc3fd/ENCFF732BTH.bam ENCODE3 GRCh38 archived ENCFF424ZJU bam bam unfiltered alignments GRCh38 ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF657PTT/, /files/ENCFF946FRP/, /files/ENCFF643CGH/ 8637709208 ENCODE Processing Pipeline c8a2324ec0094e551fcd984bb230cbbb https://www.encodeproject.org/files/ENCFF424ZJU/@@download/ENCFF424ZJU.bam released s3://encode-public/2017/02/02/9c9f1e55-749f-4e1f-b674-32eb57377935/ENCFF424ZJU.bam ENCODE3 GRCh38 archived ENCFF947GHW bam bam unfiltered alignments GRCh38 ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF657PTT/, /files/ENCFF946FRP/ 8853253025 ENCODE Processing Pipeline e375817d3b1f083704b41d37b6efd39f https://www.encodeproject.org/files/ENCFF947GHW/@@download/ENCFF947GHW.bam released s3://encode-public/2020/06/25/c19269cb-8ac6-4e5d-8636-73daf23a5c98/ENCFF947GHW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF298NTY bam bam alignments GRCh38 ENCSR190PGI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF657PTT/, /files/ENCFF946FRP/ 4988154453 ENCODE Processing Pipeline 80031924a45c51d6d98c3d372342fb52 https://www.encodeproject.org/files/ENCFF298NTY/@@download/ENCFF298NTY.bam released s3://encode-public/2020/06/25/fe61c353-a3de-42ac-a133-bed23ade1dbe/ENCFF298NTY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF626FRU fastq fastq reads ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF213WYB/ 2739538535 Michael Snyder, Stanford f77d01c2beb9e2fc3ed71697df11bb02 SRA:SRR6212720 https://www.encodeproject.org/files/ENCFF626FRU/@@download/ENCFF626FRU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/3e884482-9ea5-408b-8b0b-264fe807faea/ENCFF626FRU.fastq.gz ENCFF213WYB fastq fastq reads ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF626FRU/ 3333372933 Michael Snyder, Stanford 13094f974409cf2aca2b0eb15ac15d11 SRA:SRR6212720 https://www.encodeproject.org/files/ENCFF213WYB/@@download/ENCFF213WYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/802f7e4a-10b9-4704-99f4-2829288c6c5d/ENCFF213WYB.fastq.gz ENCFF598NRN bam bam unfiltered alignments hg19 ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF626FRU/, /files/ENCFF807MUK/, /files/ENCFF213WYB/ 5900482998 ENCODE Processing Pipeline 614af7c693c185e34a6891ab32714bf9 https://www.encodeproject.org/files/ENCFF598NRN/@@download/ENCFF598NRN.bam released s3://encode-public/2017/03/17/8fe0344a-1966-486f-9254-b38558896fdb/ENCFF598NRN.bam ENCODE3 hg19 archived ENCFF180TTA bam bam unfiltered alignments GRCh38 ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF626FRU/, /files/ENCFF643CGH/, /files/ENCFF213WYB/ 5912004885 ENCODE Processing Pipeline 42a26e1ca9bafcaa7cff68da6f41f493 https://www.encodeproject.org/files/ENCFF180TTA/@@download/ENCFF180TTA.bam released s3://encode-public/2017/03/17/e2cb6b9e-e61a-4bf7-9ec7-930fb8f9792c/ENCFF180TTA.bam ENCODE3 GRCh38 archived ENCFF801GEF bam bam alignments GRCh38 ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF626FRU/, /files/ENCFF643CGH/, /files/ENCFF213WYB/ 4682009947 ENCODE Processing Pipeline 586ab31508a56391f0ff606bfa9fcae2 https://www.encodeproject.org/files/ENCFF801GEF/@@download/ENCFF801GEF.bam released s3://encode-public/2017/03/17/d7227447-7c36-48b4-b799-ef82a431d2e4/ENCFF801GEF.bam ENCODE3 GRCh38 archived ENCFF735RKK bam bam alignments hg19 ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF626FRU/, /files/ENCFF807MUK/, /files/ENCFF213WYB/ 4677368692 ENCODE Processing Pipeline a0dda0d7171e44b9563278aef0053940 https://www.encodeproject.org/files/ENCFF735RKK/@@download/ENCFF735RKK.bam released s3://encode-public/2017/03/17/c5ce10f4-42cc-4cbe-81eb-5e174aa8082c/ENCFF735RKK.bam ENCODE3 hg19 archived ENCFF527MWU bam bam alignments GRCh38 ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF626FRU/, /files/ENCFF213WYB/ 4612849766 ENCODE Processing Pipeline f29d0777eb7476187a121a8526fb6efe https://www.encodeproject.org/files/ENCFF527MWU/@@download/ENCFF527MWU.bam released s3://encode-public/2020/06/03/a3e94602-7e1f-4e8f-b3fe-be11b2e3f0f0/ENCFF527MWU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF572HXW bam bam unfiltered alignments GRCh38 ENCSR139VAY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF626FRU/, /files/ENCFF213WYB/ 5913012941 ENCODE Processing Pipeline 5e320c2b3d7f3f521ad5c6189895755d https://www.encodeproject.org/files/ENCFF572HXW/@@download/ENCFF572HXW.bam released s3://encode-public/2020/06/03/82e6fff6-fcb9-41ec-9c10-fa76624bf80e/ENCFF572HXW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF804NZY fastq fastq reads ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF843ANS/ 2070117115 Richard Myers, HAIB 65b2315fcdbc449285b58624dfc05129 SRA:SRR8660376 https://www.encodeproject.org/files/ENCFF804NZY/@@download/ENCFF804NZY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/f6aaea2f-583e-4d78-b4cd-d3f0a0a917b3/ENCFF804NZY.fastq.gz ENCFF843ANS fastq fastq reads ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF804NZY/ 2030160981 Richard Myers, HAIB 740ae04c5e002c16de0094cd15139dfe SRA:SRR8660376 https://www.encodeproject.org/files/ENCFF843ANS/@@download/ENCFF843ANS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/fa9d087e-0d18-44fd-9771-21b162fa79af/ENCFF843ANS.fastq.gz ENCFF329DOO bam bam unfiltered alignments hg19 ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF843ANS/, /files/ENCFF807MUK/, /files/ENCFF804NZY/ 5008542735 ENCODE Processing Pipeline 8e409df3812d8dc719ab657588171994 https://www.encodeproject.org/files/ENCFF329DOO/@@download/ENCFF329DOO.bam released s3://encode-public/2017/02/02/c2189a84-0d3c-46e5-995d-f82635c2f2fc/ENCFF329DOO.bam ENCODE3 hg19 archived ENCFF501SMY bam bam alignments hg19 ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF843ANS/, /files/ENCFF807MUK/, /files/ENCFF804NZY/ 3568566872 ENCODE Processing Pipeline 5a5aaa31461422a81310f9ead28fd22e https://www.encodeproject.org/files/ENCFF501SMY/@@download/ENCFF501SMY.bam released s3://encode-public/2017/02/02/7520033b-88cf-4943-bc4d-1ae6fb32a4d6/ENCFF501SMY.bam ENCODE3 hg19 archived ENCFF595RCT bam bam unfiltered alignments GRCh38 ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF843ANS/, /files/ENCFF804NZY/, /files/ENCFF643CGH/ 5032719710 ENCODE Processing Pipeline 8a1f106d325cf6da3313c29e422eb85d https://www.encodeproject.org/files/ENCFF595RCT/@@download/ENCFF595RCT.bam released s3://encode-public/2017/02/02/a48fd822-de4b-4e4a-be51-81113f82ac97/ENCFF595RCT.bam ENCODE3 GRCh38 archived ENCFF711ZWZ bam bam alignments GRCh38 ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF843ANS/, /files/ENCFF804NZY/, /files/ENCFF643CGH/ 3572624972 ENCODE Processing Pipeline e4cdf7996a427bcf6d62368fbaf653ad https://www.encodeproject.org/files/ENCFF711ZWZ/@@download/ENCFF711ZWZ.bam released s3://encode-public/2017/02/02/109e9a5b-3100-4751-be3e-ebdee45e3f78/ENCFF711ZWZ.bam ENCODE3 GRCh38 archived ENCFF483VMN bam bam alignments GRCh38 ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF843ANS/, /files/ENCFF804NZY/ 3365198114 ENCODE Processing Pipeline 417e78563c5125c02bc637ec7dcd18b4 https://www.encodeproject.org/files/ENCFF483VMN/@@download/ENCFF483VMN.bam released s3://encode-public/2020/06/06/3e159fb3-e273-46d8-8f65-badac4a915b3/ENCFF483VMN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF165EPF bam bam unfiltered alignments GRCh38 ENCSR972HZL Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF843ANS/, /files/ENCFF804NZY/ 5052924358 ENCODE Processing Pipeline 48c4ebef70443a8da7a2440f3f3a09e7 https://www.encodeproject.org/files/ENCFF165EPF/@@download/ENCFF165EPF.bam released s3://encode-public/2020/06/06/5577d5e1-a784-4917-9d6c-50974aa72122/ENCFF165EPF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF615SLS bam bam unfiltered alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF417UPA/ 940633357 ENCODE Processing Pipeline cfa83af3b8a44b1251d6938d39c57d6c https://www.encodeproject.org/files/ENCFF615SLS/@@download/ENCFF615SLS.bam released s3://encode-public/2020/09/29/7db54064-029e-4a27-bfdb-7ba03375d09c/ENCFF615SLS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF846NUD fastq fastq reads ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 641976232 Tim Reddy, Duke e8a43d855ec90f54a4663388e17aa1ef SRA:SRR5129651 https://www.encodeproject.org/files/ENCFF846NUD/@@download/ENCFF846NUD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/7758bd3d-8f90-437f-811e-171f4c7b4271/ENCFF846NUD.fastq.gz ENCFF417UPA fastq fastq reads ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 689842205 Tim Reddy, Duke 6e3c8711e1490361fcf869c3ba8b33c9 SRA:SRR5129650 https://www.encodeproject.org/files/ENCFF417UPA/@@download/ENCFF417UPA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/43c928c2-ceb1-4391-aea2-e4f4900d9b6c/ENCFF417UPA.fastq.gz ENCFF113LFE fastq fastq reads ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 824259120 Tim Reddy, Duke a97ce0a5c24692538ab7c4409cb56203 SRA:SRR5129649 https://www.encodeproject.org/files/ENCFF113LFE/@@download/ENCFF113LFE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/11b7bb84-7e43-4d55-bfcb-7baaa51e9b87/ENCFF113LFE.fastq.gz ENCFF220JWH bam bam alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF113LFE/ 894041625 Tim Reddy, Duke 2b6a7cd78cc456c0ddd252799f9671a6 https://www.encodeproject.org/files/ENCFF220JWH/@@download/ENCFF220JWH.bam released s3://encode-public/2016/12/15/f2324242-a1b8-48aa-b3c9-63df6d55cf73/ENCFF220JWH.bam Lab custom GRCh38 archived ENCFF923SPD bam bam alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF846NUD/ 705093920 Tim Reddy, Duke 9435123ff998567c43209c433a478c83 https://www.encodeproject.org/files/ENCFF923SPD/@@download/ENCFF923SPD.bam released s3://encode-public/2016/12/15/a5ebea46-a05d-403b-9471-87ff3394d3c1/ENCFF923SPD.bam Lab custom GRCh38 archived ENCFF298BPR bam bam alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF417UPA/ 755860923 Tim Reddy, Duke b7198c0dc60683987c3979a23dd4497a https://www.encodeproject.org/files/ENCFF298BPR/@@download/ENCFF298BPR.bam released s3://encode-public/2016/12/15/20a28f73-fd07-46a0-b543-75eba20fe5c7/ENCFF298BPR.bam Lab custom GRCh38 archived ENCFF823GBZ bam bam alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF113LFE/ 941269800 ENCODE Processing Pipeline 677462f0906fb81c05afde03a760b635 https://www.encodeproject.org/files/ENCFF823GBZ/@@download/ENCFF823GBZ.bam released s3://encode-public/2020/09/29/84413dca-af14-45d2-bc63-2c1f3de2fa27/ENCFF823GBZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF516LKS bam bam unfiltered alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF846NUD/, /files/ENCFF110MCL/ 875701892 ENCODE Processing Pipeline b28f42bc35820b7e02f5598ffec4a9f4 https://www.encodeproject.org/files/ENCFF516LKS/@@download/ENCFF516LKS.bam released s3://encode-public/2020/09/29/f868a0d2-4ab1-474c-97a5-7ea9332d1d7a/ENCFF516LKS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF967NFV bam bam unfiltered alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF113LFE/ 1108565521 ENCODE Processing Pipeline db8bd6deefec57fa2a534fc6b746eeac https://www.encodeproject.org/files/ENCFF967NFV/@@download/ENCFF967NFV.bam released s3://encode-public/2020/09/29/156c03e0-a233-4293-bb66-63c50abf6dd4/ENCFF967NFV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF203MWF bam bam alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF846NUD/, /files/ENCFF110MCL/ 736394852 ENCODE Processing Pipeline 332088ca9a7df9aaaf2eb83627d896a8 https://www.encodeproject.org/files/ENCFF203MWF/@@download/ENCFF203MWF.bam released s3://encode-public/2020/09/29/b824592a-7d10-44c0-8467-d88e4faac49d/ENCFF203MWF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF188GQD bam bam alignments GRCh38 ENCSR748SVE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF417UPA/ 798507250 ENCODE Processing Pipeline f45e6070cf2d8a8977a2bdf73b5874f1 https://www.encodeproject.org/files/ENCFF188GQD/@@download/ENCFF188GQD.bam released s3://encode-public/2020/09/29/9299287f-e268-469f-9168-a16459de01ce/ENCFF188GQD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF549JAY fastq fastq reads ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF598GVT/ 3616020052 Richard Myers, HAIB a8cba8b0bb15f9a8993cccb3a993b015 SRA:SRR6212969 https://www.encodeproject.org/files/ENCFF549JAY/@@download/ENCFF549JAY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/288ee3fa-9c82-41ff-ba08-1577a96bb271/ENCFF549JAY.fastq.gz ENCFF598GVT fastq fastq reads ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF549JAY/ 3445244821 Richard Myers, HAIB 3ef9e3fe69e2f217471353e765cea64e SRA:SRR6212969 https://www.encodeproject.org/files/ENCFF598GVT/@@download/ENCFF598GVT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/e04507a9-6c65-4511-9a4c-6c8d7cdc190b/ENCFF598GVT.fastq.gz ENCFF091IAT bam bam unfiltered alignments hg19 ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF549JAY/, /files/ENCFF598GVT/ 8207661052 ENCODE Processing Pipeline 0bab0b6e3ad35737db87277b512b7345 https://www.encodeproject.org/files/ENCFF091IAT/@@download/ENCFF091IAT.bam released s3://encode-public/2017/02/02/13328a7f-5582-4ac1-96b4-ab3ed4f166ad/ENCFF091IAT.bam ENCODE3 hg19 archived ENCFF878QHJ bam bam alignments hg19 ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF549JAY/, /files/ENCFF598GVT/ 5804165976 ENCODE Processing Pipeline dbed9dfec3252aab6bd6d433aa8415ce https://www.encodeproject.org/files/ENCFF878QHJ/@@download/ENCFF878QHJ.bam released s3://encode-public/2017/02/02/a9338b49-6f39-46c9-8ee1-89d18677a966/ENCFF878QHJ.bam ENCODE3 hg19 archived ENCFF290PIB bam bam alignments GRCh38 ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF549JAY/, /files/ENCFF598GVT/ 5810856521 ENCODE Processing Pipeline 4f7966fb7f222a2ad4e8bca7532ce2ae https://www.encodeproject.org/files/ENCFF290PIB/@@download/ENCFF290PIB.bam released s3://encode-public/2017/02/02/6b66d5ae-d5b4-4ed1-ab50-6c123827885f/ENCFF290PIB.bam ENCODE3 GRCh38 archived ENCFF283HXT bam bam unfiltered alignments GRCh38 ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF549JAY/, /files/ENCFF598GVT/ 8239382803 ENCODE Processing Pipeline 82381b82b7d15238efa2e8b4da083a0f https://www.encodeproject.org/files/ENCFF283HXT/@@download/ENCFF283HXT.bam released s3://encode-public/2017/02/02/cb7d3971-b46a-41ac-8312-165ea09716e5/ENCFF283HXT.bam ENCODE3 GRCh38 archived ENCFF133OFB bam bam unfiltered alignments GRCh38 ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF549JAY/, /files/ENCFF598GVT/ 8264667439 ENCODE Processing Pipeline 9b6226a72dded3e33649deccde8ef039 https://www.encodeproject.org/files/ENCFF133OFB/@@download/ENCFF133OFB.bam released s3://encode-public/2020/10/28/a6b78f2a-7a5c-4fb9-995b-960228e16b8b/ENCFF133OFB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF429KAL bam bam alignments GRCh38 ENCSR249UPE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF549JAY/, /files/ENCFF598GVT/ 5504650856 ENCODE Processing Pipeline 47acda49a156692020cd525e4ea810b9 https://www.encodeproject.org/files/ENCFF429KAL/@@download/ENCFF429KAL.bam released s3://encode-public/2020/10/28/da7769f7-3c21-4d7b-b083-11d23d09ffdd/ENCFF429KAL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF315PYU fastq fastq reads ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF528TFO/ 3204790033 Michael Snyder, Stanford 8e8b4d9af04a6ead2648e3822adfab44 SRA:SRR6212660 https://www.encodeproject.org/files/ENCFF315PYU/@@download/ENCFF315PYU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/0fd74261-588c-4dd4-9656-09b06e01399b/ENCFF315PYU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF528TFO fastq fastq reads ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF315PYU/ 3762756128 Michael Snyder, Stanford a28b1a44b379dc885d94dd2fdf3c05c7 SRA:SRR6212660 https://www.encodeproject.org/files/ENCFF528TFO/@@download/ENCFF528TFO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/e59aaad9-8901-4ae6-949a-b9979b55ed0d/ENCFF528TFO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF925AMH bam bam alignments GRCh38 ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF315PYU/, /files/ENCFF528TFO/ 4191177061 ENCODE Processing Pipeline b2abaa6114d0bf5f220d3fddf4df01c4 https://www.encodeproject.org/files/ENCFF925AMH/@@download/ENCFF925AMH.bam released s3://encode-public/2017/01/27/69b71724-de38-452a-9f9a-35f0456c9519/ENCFF925AMH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF791BFN bam bam unfiltered alignments GRCh38 ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF315PYU/, /files/ENCFF528TFO/ 6174471256 ENCODE Processing Pipeline fff9430bfdd0685b5add645aeda989aa https://www.encodeproject.org/files/ENCFF791BFN/@@download/ENCFF791BFN.bam released s3://encode-public/2017/01/27/37e18d44-d85b-4b31-af9b-d33fe9df60d3/ENCFF791BFN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF377WIS bam bam unfiltered alignments hg19 ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF315PYU/, /files/ENCFF528TFO/ 6167299928 ENCODE Processing Pipeline b49ce60092846a276c4d1200d46894fa https://www.encodeproject.org/files/ENCFF377WIS/@@download/ENCFF377WIS.bam released s3://encode-public/2017/01/28/982d0252-6845-4c72-bd3c-2fccfc4a8d31/ENCFF377WIS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF320PZV bam bam alignments hg19 ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF315PYU/, /files/ENCFF528TFO/ 4184234465 ENCODE Processing Pipeline 901134be73d2a79cfd83dbb1664e8ad4 https://www.encodeproject.org/files/ENCFF320PZV/@@download/ENCFF320PZV.bam released s3://encode-public/2017/01/28/f71293b8-d8ce-4d42-a19f-705122a58ad8/ENCFF320PZV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF659PRD bam bam unfiltered alignments GRCh38 ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF315PYU/, /files/ENCFF528TFO/ 6191189923 ENCODE Processing Pipeline f85489ec0d3ba1e6321d076f45166cfe https://www.encodeproject.org/files/ENCFF659PRD/@@download/ENCFF659PRD.bam released s3://encode-public/2020/06/03/a47e1072-50d8-4337-9277-9509bb72858b/ENCFF659PRD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF197TPN bam bam alignments GRCh38 ENCSR035ELI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF315PYU/, /files/ENCFF528TFO/ 4053885282 ENCODE Processing Pipeline 16dbc29e5aec8d9a2c7164d30079cf3e https://www.encodeproject.org/files/ENCFF197TPN/@@download/ENCFF197TPN.bam released s3://encode-public/2020/06/03/65074c13-dccf-40fc-860d-b85e97bab12a/ENCFF197TPN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF823GXV fastq fastq reads ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF247YLS/ 3053115876 Michael Snyder, Stanford f3a85eadda378b010227538798798a47 SRA:SRR6213602 https://www.encodeproject.org/files/ENCFF823GXV/@@download/ENCFF823GXV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/655205b9-17fe-40cd-bdc0-88d19fbe4541/ENCFF823GXV.fastq.gz ENCFF247YLS fastq fastq reads ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF823GXV/ 3694969646 Michael Snyder, Stanford c83b1471b714631f3db9f78af17c3644 SRA:SRR6213602 https://www.encodeproject.org/files/ENCFF247YLS/@@download/ENCFF247YLS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/f105465f-2b82-40cd-bdd0-2ce92a40bd07/ENCFF247YLS.fastq.gz ENCFF406AEB bam bam unfiltered alignments GRCh38 ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF823GXV/, /files/ENCFF247YLS/, /files/ENCFF643CGH/ 6498759253 ENCODE Processing Pipeline f0c94f9f9a38d0c38064f67d84c99d9d https://www.encodeproject.org/files/ENCFF406AEB/@@download/ENCFF406AEB.bam released s3://encode-public/2017/03/17/7425b423-372f-4086-831b-93c6b953ce38/ENCFF406AEB.bam ENCODE3 GRCh38 archived ENCFF233RYV bam bam unfiltered alignments hg19 ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF823GXV/, /files/ENCFF247YLS/, /files/ENCFF807MUK/ 6486846450 ENCODE Processing Pipeline 72bbfd93e46636fc41571460f03d7015 https://www.encodeproject.org/files/ENCFF233RYV/@@download/ENCFF233RYV.bam released s3://encode-public/2017/03/17/97c8d0bc-7b4c-403d-9c7f-a8d1e7770f4b/ENCFF233RYV.bam ENCODE3 hg19 archived ENCFF482GCR bam bam alignments hg19 ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF823GXV/, /files/ENCFF247YLS/, /files/ENCFF807MUK/ 5207233560 ENCODE Processing Pipeline 704564258c6c1d6d19d5510cdf7097af https://www.encodeproject.org/files/ENCFF482GCR/@@download/ENCFF482GCR.bam released s3://encode-public/2017/03/17/7d884907-319f-4c3c-bf65-fc2aaa643848/ENCFF482GCR.bam ENCODE3 hg19 archived ENCFF298QEY bam bam alignments GRCh38 ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF823GXV/, /files/ENCFF247YLS/, /files/ENCFF643CGH/ 5215162759 ENCODE Processing Pipeline fc4130a6dead8c1bfc933aa4448f0c51 https://www.encodeproject.org/files/ENCFF298QEY/@@download/ENCFF298QEY.bam released s3://encode-public/2017/03/17/fb283a46-0a92-46f9-966e-08571a3ad79c/ENCFF298QEY.bam ENCODE3 GRCh38 archived ENCFF496XOJ bam bam unfiltered alignments GRCh38 ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF823GXV/, /files/ENCFF247YLS/ 6492182281 ENCODE Processing Pipeline 4e5d449a691097eab67c7b0d9e4afd14 https://www.encodeproject.org/files/ENCFF496XOJ/@@download/ENCFF496XOJ.bam released s3://encode-public/2020/06/02/834c7194-9e52-44a3-9c17-f68a444f5a91/ENCFF496XOJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF066GVT bam bam alignments GRCh38 ENCSR394RPZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF823GXV/, /files/ENCFF247YLS/ 5131433540 ENCODE Processing Pipeline ff1225edd8dd72b38c10443a2b79c0e7 https://www.encodeproject.org/files/ENCFF066GVT/@@download/ENCFF066GVT.bam released s3://encode-public/2020/06/02/afe2456c-92e5-44b3-bc24-82fa453c396d/ENCFF066GVT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF337PZA fastq fastq reads ENCSR953NJZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 2738741252 Richard Myers, HAIB fa32fe957a4deaff8a73111159627efb SRA:SRR14107381 https://www.encodeproject.org/files/ENCFF337PZA/@@download/ENCFF337PZA.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/07/31/db725da4-18be-410a-905d-84813539deb6/ENCFF337PZA.fastq.gz ENCFF349HLG bam bam unfiltered alignments GRCh38 ENCSR953NJZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF337PZA/ 2468881953 ENCODE Processing Pipeline 8bb252e4dfba28075e4c0de9128bcbf6 https://www.encodeproject.org/files/ENCFF349HLG/@@download/ENCFF349HLG.bam released s3://encode-public/2020/04/20/71a4a1d9-0978-4776-bb9d-eb1cb8e4fd9e/ENCFF349HLG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF213VOZ bam bam alignments GRCh38 ENCSR953NJZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF337PZA/ 1624509744 ENCODE Processing Pipeline ab17f2f26315a17dd0a867ae3785bb78 https://www.encodeproject.org/files/ENCFF213VOZ/@@download/ENCFF213VOZ.bam released s3://encode-public/2020/04/20/132d90be-f611-4782-9a23-e9c2373b275f/ENCFF213VOZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF944LNC fastq fastq reads ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF676OSC/ 1999278136 Richard Myers, HAIB 3ed55eb222e33eb76ab2c13bcf838978 SRA:SRR8659944 https://www.encodeproject.org/files/ENCFF944LNC/@@download/ENCFF944LNC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/2ad3f57f-8e59-4dc1-8bf1-e35cebfe8d81/ENCFF944LNC.fastq.gz ENCFF676OSC fastq fastq reads ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF944LNC/ 2079354341 Richard Myers, HAIB d9d75c24cd575caebcf989606fdc999e SRA:SRR8659944 https://www.encodeproject.org/files/ENCFF676OSC/@@download/ENCFF676OSC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/1f2ee506-f3fb-4bc4-b8ac-313826d84881/ENCFF676OSC.fastq.gz ENCFF765UBM bam bam unfiltered alignments hg19 ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF676OSC/, /files/ENCFF807MUK/, /files/ENCFF944LNC/ 4930888600 ENCODE Processing Pipeline beff434a3318f8e1e64c154fcb9560b1 https://www.encodeproject.org/files/ENCFF765UBM/@@download/ENCFF765UBM.bam released s3://encode-public/2017/02/02/043644d7-2882-464e-9331-ca28e24421d1/ENCFF765UBM.bam ENCODE3 hg19 archived ENCFF179GVV bam bam alignments hg19 ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF676OSC/, /files/ENCFF807MUK/, /files/ENCFF944LNC/ 3818630215 ENCODE Processing Pipeline c3caa6edb9d42d8d8f6187cd58a28b1e https://www.encodeproject.org/files/ENCFF179GVV/@@download/ENCFF179GVV.bam released s3://encode-public/2017/02/02/a38762ce-9f7d-4ceb-8925-1a9863143282/ENCFF179GVV.bam ENCODE3 hg19 archived ENCFF428YBW bam bam unfiltered alignments GRCh38 ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF676OSC/, /files/ENCFF643CGH/, /files/ENCFF944LNC/ 4949626356 ENCODE Processing Pipeline d7f7223a3db41c34ed71446e436fa110 https://www.encodeproject.org/files/ENCFF428YBW/@@download/ENCFF428YBW.bam released s3://encode-public/2017/02/02/aa6fff55-4ce6-461b-a676-2c259eb18b63/ENCFF428YBW.bam ENCODE3 GRCh38 archived ENCFF544LSH bam bam alignments GRCh38 ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF676OSC/, /files/ENCFF643CGH/, /files/ENCFF944LNC/ 3824014357 ENCODE Processing Pipeline 41e727bef42a36b7eef0be18b568efcd https://www.encodeproject.org/files/ENCFF544LSH/@@download/ENCFF544LSH.bam released s3://encode-public/2017/02/02/ce958bbf-c0a6-40d6-8ff8-a96c83b8afaa/ENCFF544LSH.bam ENCODE3 GRCh38 archived ENCFF638XAW bam bam unfiltered alignments GRCh38 ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF944LNC/, /files/ENCFF676OSC/ 4877550330 ENCODE Processing Pipeline b507abd06aebbb22bd1c71e7722234c4 https://www.encodeproject.org/files/ENCFF638XAW/@@download/ENCFF638XAW.bam released s3://encode-public/2020/06/06/cca39aa4-68e5-4a5b-82f8-2755f26de035/ENCFF638XAW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF276TKT bam bam alignments GRCh38 ENCSR007GGB Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF944LNC/, /files/ENCFF676OSC/ 3618062338 ENCODE Processing Pipeline 60a2f31684f4f07fdb37f43e508125aa https://www.encodeproject.org/files/ENCFF276TKT/@@download/ENCFF276TKT.bam released s3://encode-public/2020/06/06/3b5d891e-a056-462d-8e4e-568e058d55d6/ENCFF276TKT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF303GJS bam bam unfiltered alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF742PUR/, /files/ENCFF110MCL/, /files/ENCFF460NPB/ 3020375119 ENCODE Processing Pipeline f5682b1f7e934d6947bc64e629702e41 https://www.encodeproject.org/files/ENCFF303GJS/@@download/ENCFF303GJS.bam released s3://encode-public/2020/09/20/7fab77b4-cd81-42ae-a0b1-60e593cf97f0/ENCFF303GJS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF940QHK bam bam alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF742PUR/, /files/ENCFF110MCL/, /files/ENCFF460NPB/ 2576890301 ENCODE Processing Pipeline d98ad55ce25564bb0fd7dbc67a76fd91 https://www.encodeproject.org/files/ENCFF940QHK/@@download/ENCFF940QHK.bam released s3://encode-public/2020/09/20/847160d1-6db8-4e02-85e3-57c424684d02/ENCFF940QHK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF033QKJ bam bam alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF735HAI/, /files/ENCFF402MBE/ 3215090461 ENCODE Processing Pipeline 1373dc5323d3021e25f014182f71487d https://www.encodeproject.org/files/ENCFF033QKJ/@@download/ENCFF033QKJ.bam released s3://encode-public/2020/09/20/a5b1b68a-c9f9-4c77-a351-f10e749a6646/ENCFF033QKJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF402MBE fastq fastq reads ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 2040943854 Bradley Bernstein, Broad 1642228bf843a465f21a006e650b026e SRA:SRR10837495 https://www.encodeproject.org/files/ENCFF402MBE/@@download/ENCFF402MBE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/5399ac39-0db5-4b07-9f7b-15f1363b4d8f/ENCFF402MBE.fastq.gz ENCFF735HAI fastq fastq reads ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 2083355477 Bradley Bernstein, Broad 105135d52fbe097e798dacb84d755c23 SRA:SRR10837496 https://www.encodeproject.org/files/ENCFF735HAI/@@download/ENCFF735HAI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/51fe2bf7-6edb-47ca-b39b-f8af7b9fee4f/ENCFF735HAI.fastq.gz ENCFF373LQP bam bam unfiltered alignments hg19 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF735HAI/, /files/ENCFF402MBE/ 3843568166 ENCODE Processing Pipeline e8772eacf4a90f276cde7899091460eb https://www.encodeproject.org/files/ENCFF373LQP/@@download/ENCFF373LQP.bam released s3://encode-public/2019/06/12/c6b6ea5b-8817-4282-8870-20817d834aff/ENCFF373LQP.bam ENCODE3 hg19 archived ENCFF623JEZ bam bam alignments hg19 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 /files/ENCFF807MUK/, /files/ENCFF735HAI/, /files/ENCFF402MBE/ 3149579135 ENCODE Processing Pipeline a0534d832fec94aa1c6166b67f47067a https://www.encodeproject.org/files/ENCFF623JEZ/@@download/ENCFF623JEZ.bam released s3://encode-public/2019/06/12/816e83a7-5102-496f-a905-6f1d587efdb0/ENCFF623JEZ.bam ENCODE3 hg19 archived ENCFF799KHH bam bam unfiltered alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF735HAI/, /files/ENCFF402MBE/ 3852550556 ENCODE Processing Pipeline 74b1818f8e4e57e891913b114ac38f07 https://www.encodeproject.org/files/ENCFF799KHH/@@download/ENCFF799KHH.bam released s3://encode-public/2019/06/12/5f84afbf-5026-4dbf-b82e-74ade9bff1a9/ENCFF799KHH.bam ENCODE3 GRCh38 archived ENCFF118YAN bam bam alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 /files/ENCFF643CGH/, /files/ENCFF735HAI/, /files/ENCFF402MBE/ 3154059084 ENCODE Processing Pipeline b64284bda227f0ded2064000ed488b4b https://www.encodeproject.org/files/ENCFF118YAN/@@download/ENCFF118YAN.bam released s3://encode-public/2019/06/12/4cae7d08-2a66-42ea-8a4f-f281ba76b59e/ENCFF118YAN.bam ENCODE3 GRCh38 archived ENCFF742PUR fastq fastq reads ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1556217705 Bradley Bernstein, Broad 0e698cb9de68a8acc184aabfb58bf273 SRA:SRR10837497 https://www.encodeproject.org/files/ENCFF742PUR/@@download/ENCFF742PUR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/c42d4a1e-7b3a-474a-ba7f-bff7ef4e84e2/ENCFF742PUR.fastq.gz ENCFF460NPB fastq fastq reads ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1563769812 Bradley Bernstein, Broad 08ca5fe14ed4d8c06c5cde128132f84e SRA:SRR10837498 https://www.encodeproject.org/files/ENCFF460NPB/@@download/ENCFF460NPB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/edbe35d7-d1ec-4752-9d55-e0769897e8fe/ENCFF460NPB.fastq.gz ENCFF765IQY bam bam alignments hg19 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF460NPB/, /files/ENCFF807MUK/, /files/ENCFF742PUR/ 2523546375 ENCODE Processing Pipeline 2e9c6b4d04cb3af076b60720844e6afa https://www.encodeproject.org/files/ENCFF765IQY/@@download/ENCFF765IQY.bam released s3://encode-public/2017/08/04/3d497289-0fc2-4c19-b80f-4a34e35f4b82/ENCFF765IQY.bam ENCODE3 hg19 archived ENCFF659YPA bam bam unfiltered alignments hg19 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF460NPB/, /files/ENCFF807MUK/, /files/ENCFF742PUR/ 2984961310 ENCODE Processing Pipeline 541d46cb052c1dc1ead1fe1f9650b840 https://www.encodeproject.org/files/ENCFF659YPA/@@download/ENCFF659YPA.bam released s3://encode-public/2017/08/04/fb531849-d3c2-45aa-b601-f967c693e5d5/ENCFF659YPA.bam ENCODE3 hg19 archived ENCFF459PIH bam bam unfiltered alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF460NPB/, /files/ENCFF643CGH/, /files/ENCFF742PUR/ 2992674289 ENCODE Processing Pipeline 3fbb0bf173cc4fdbe33756b44efcb869 https://www.encodeproject.org/files/ENCFF459PIH/@@download/ENCFF459PIH.bam released s3://encode-public/2017/08/04/3c144bd3-800d-471c-8739-eecaa7cad2ed/ENCFF459PIH.bam ENCODE3 GRCh38 archived ENCFF462UDU bam bam alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF460NPB/, /files/ENCFF643CGH/, /files/ENCFF742PUR/ 2526838093 ENCODE Processing Pipeline adf0777f39c2ed92427af0027ce292e2 https://www.encodeproject.org/files/ENCFF462UDU/@@download/ENCFF462UDU.bam released s3://encode-public/2017/08/04/37debcfe-4242-4a2c-a22d-8358bb13bba1/ENCFF462UDU.bam ENCODE3 GRCh38 archived ENCFF026GUY bam bam unfiltered alignments GRCh38 ENCSR113QDZ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 /files/ENCFF110MCL/, /files/ENCFF735HAI/, /files/ENCFF402MBE/ 3895121046 ENCODE Processing Pipeline ac32329e2dea9409b667b69b015072b2 https://www.encodeproject.org/files/ENCFF026GUY/@@download/ENCFF026GUY.bam released s3://encode-public/2020/09/20/64db5bc2-fa34-403c-931a-140dbd62ecfe/ENCFF026GUY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF381TPL bigWig bigWig read-depth normalized signal dm6 ENCSR981YAA Control ChIP-seq /fly-donors/ENCDO858AKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37655/'], '@type': ['Target', 'Item'], 'name': 'twi-dmelanogaster', 'label': 'twi', '@id': '/targets/twi-dmelanogaster/', 'title': 'twi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62a3567e-5314-44ef-bda2-02590630f076', 'status': 'released'} dm3 2R 18924408 18947902 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF618CBS/ 17898149 Kevin White, UChicago fcb180abcacd837f9b99e6ecee45ab6b https://www.encodeproject.org/files/ENCFF381TPL/@@download/ENCFF381TPL.bigWig released s3://encode-public/2019/06/18/37ad1997-5ec2-4b2d-a639-498918ad01c0/ENCFF381TPL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF082BHL fastq fastq reads ENCSR981YAA Control ChIP-seq /fly-donors/ENCDO858AKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37655/'], '@type': ['Target', 'Item'], 'name': 'twi-dmelanogaster', 'label': 'twi', '@id': '/targets/twi-dmelanogaster/', 'title': 'twi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62a3567e-5314-44ef-bda2-02590630f076', 'status': 'released'} dm3 2R 18924408 18947902 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1848874072 Kevin White, UChicago 9a51f02046b2d5de74d554d823f04094 https://www.encodeproject.org/files/ENCFF082BHL/@@download/ENCFF082BHL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/53e3a08a-5bc1-4f25-9987-8415265a6042/ENCFF082BHL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF618CBS bam bam alignments dm6 ENCSR981YAA Control ChIP-seq /fly-donors/ENCDO858AKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37655/'], '@type': ['Target', 'Item'], 'name': 'twi-dmelanogaster', 'label': 'twi', '@id': '/targets/twi-dmelanogaster/', 'title': 'twi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62a3567e-5314-44ef-bda2-02590630f076', 'status': 'released'} dm3 2R 18924408 18947902 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF082BHL/, /files/ENCFF479RCH/ 2512698536 Kevin White, UChicago 53c32ea3edc37c534a2b5f1ebd2fa1a2 https://www.encodeproject.org/files/ENCFF618CBS/@@download/ENCFF618CBS.bam released s3://encode-public/2019/06/18/d03e6987-3460-44ee-a302-cd179bc86cc0/ENCFF618CBS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF451KVH bigWig bigWig signal of unique reads dm6 ENCSR981YAA Control ChIP-seq /fly-donors/ENCDO858AKY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37655/'], '@type': ['Target', 'Item'], 'name': 'twi-dmelanogaster', 'label': 'twi', '@id': '/targets/twi-dmelanogaster/', 'title': 'twi (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '62a3567e-5314-44ef-bda2-02590630f076', 'status': 'released'} dm3 2R 18924408 18947902 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF618CBS/ 17848741 Kevin White, UChicago 59efe4e5a89e22dffba4bc9a208c6d49 https://www.encodeproject.org/files/ENCFF451KVH/@@download/ENCFF451KVH.bigWig released s3://encode-public/2019/06/18/d5afe4f7-61de-4a1a-9602-ba26b5143283/ENCFF451KVH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF465JZQ tagAlign tagAlign alignments hg19 ENCSR491DRJ Control ChIP-seq /human-donors/ENCDO895TFL/ UBERON:0001199 mucosa of stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF171LLJ/, /files/ENCFF705DCE/, /files/ENCFF768RZF/, /files/ENCFF807KSV/ 241948426 Anshul Kundaje, Stanford 1f3b16908648795db2b741b02325d458 https://www.encodeproject.org/files/ENCFF465JZQ/@@download/ENCFF465JZQ.tagAlign.gz archived s3://encode-public/2016/03/30/7f6a999d-29af-4827-ae71-abf56ba32672/ENCFF465JZQ.tagAlign.gz Lab custom hg19 archived low read length ENCFF640SKK tagAlign tagAlign alignments hg19 ENCSR491DRJ Control ChIP-seq UBERON:0001199 mucosa of stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 204351787 Anshul Kundaje, Stanford ac845b3c79fd6416dbba2a491152c0fa https://www.encodeproject.org/files/ENCFF640SKK/@@download/ENCFF640SKK.tagAlign.gz archived s3://encode-public/2016/02/11/e32f9f55-d4d6-4811-8515-0331825e4b38/ENCFF640SKK.tagAlign.gz Lab custom hg19 archived low read length ENCFF185KNP bam bam redacted unfiltered alignments GRCh38 ENCSR491DRJ Control ChIP-seq /human-donors/ENCDO895TFL/ UBERON:0001199 mucosa of stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF171LLJ/, /files/ENCFF768RZF/, /files/ENCFF807KSV/, /files/ENCFF705DCE/, /files/ENCFF643CGH/ 721008031 ENCODE Processing Pipeline 0607f49cc64d395b019cab1a0bd7a063 https://www.encodeproject.org/files/ENCFF185KNP/@@download/ENCFF185KNP.bam released s3://encode-public/2018/01/18/b17bfbd5-3803-46de-9dc7-283b5716bf06/ENCFF185KNP.bam ENCODE3 GRCh38 archived low read length ENCFF966XSC bam bam redacted alignments GRCh38 ENCSR491DRJ Control ChIP-seq /human-donors/ENCDO895TFL/ UBERON:0001199 mucosa of stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF171LLJ/, /files/ENCFF768RZF/, /files/ENCFF807KSV/, /files/ENCFF705DCE/, /files/ENCFF643CGH/ 520696650 ENCODE Processing Pipeline 8172881eb401b890d9f15f7965fdab60 https://www.encodeproject.org/files/ENCFF966XSC/@@download/ENCFF966XSC.bam released s3://encode-public/2018/01/18/f69e6954-5d96-46ac-a6f9-9c4f76f4e459/ENCFF966XSC.bam ENCODE3 GRCh38 archived low read length ENCFF091BWL bam bam redacted alignments hg19 ENCSR491DRJ Control ChIP-seq /human-donors/ENCDO895TFL/ UBERON:0001199 mucosa of stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF171LLJ/, /files/ENCFF768RZF/, /files/ENCFF807KSV/, /files/ENCFF705DCE/ 520668627 ENCODE Processing Pipeline f8c7444bf609d3dae0ce31726e5dcb23 https://www.encodeproject.org/files/ENCFF091BWL/@@download/ENCFF091BWL.bam released s3://encode-public/2018/01/19/ca3595d4-23ae-4c4b-8ca7-236acb3f84eb/ENCFF091BWL.bam ENCODE3 hg19 archived low read length ENCFF464VPL bam bam redacted unfiltered alignments hg19 ENCSR491DRJ Control ChIP-seq /human-donors/ENCDO895TFL/ UBERON:0001199 mucosa of stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF171LLJ/, /files/ENCFF768RZF/, /files/ENCFF807KSV/, /files/ENCFF705DCE/ 713839479 ENCODE Processing Pipeline 6350e06c0dbf29f4d0d40114768e0bd0 https://www.encodeproject.org/files/ENCFF464VPL/@@download/ENCFF464VPL.bam released s3://encode-public/2018/01/19/433818c3-a23a-4cb5-a9c7-003ad8604a99/ENCFF464VPL.bam ENCODE3 hg19 archived low read length ENCFF559ALP bam bam redacted alignments GRCh38 ENCSR491DRJ Control ChIP-seq /human-donors/ENCDO895TFL/ UBERON:0001199 mucosa of stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF110MCL/, /files/ENCFF171LLJ/, /files/ENCFF705DCE/, /files/ENCFF807KSV/, /files/ENCFF768RZF/ 1545439785 ENCODE Processing Pipeline e0e41bebb61e8dda88ced9ab4c41a02d https://www.encodeproject.org/files/ENCFF559ALP/@@download/ENCFF559ALP.bam released s3://encode-public/2021/01/27/334073d4-0258-4e8c-853c-69521f62e6a4/ENCFF559ALP.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF863OCN fastq fastq reads ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1194875834 Bradley Bernstein, Broad 23af0c8f37541c106f8e54a01e13dca6 SRA:SRR10838097 https://www.encodeproject.org/files/ENCFF863OCN/@@download/ENCFF863OCN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/4692a4a7-9a69-4804-bca5-989db17c95c5/ENCFF863OCN.fastq.gz ENCFF765RZR fastq fastq reads ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1 76 single-ended 1166074140 Bradley Bernstein, Broad 0518f87d51a4d5390f98aa043d00ce2c SRA:SRR10838098 https://www.encodeproject.org/files/ENCFF765RZR/@@download/ENCFF765RZR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/3e55a691-6a48-4904-af3a-0ea3dbe93c76/ENCFF765RZR.fastq.gz ENCFF487WCY fastq fastq reads ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 938672838 Bradley Bernstein, Broad d0266b177199c429c990cc56c35c8133 SRA:SRR10838095 https://www.encodeproject.org/files/ENCFF487WCY/@@download/ENCFF487WCY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/48f04fca-e13b-4cd3-b878-08b7d43febfd/ENCFF487WCY.fastq.gz ENCFF483CGD fastq fastq reads ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_2 76 single-ended 933625571 Bradley Bernstein, Broad 7b5e280335f1f7745457bfd41990780b SRA:SRR10838096 https://www.encodeproject.org/files/ENCFF483CGD/@@download/ENCFF483CGD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/b31a2865-7599-48b5-a48c-5c9363637763/ENCFF483CGD.fastq.gz ENCFF511LTZ bam bam unfiltered alignments hg19 ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF863OCN/, /files/ENCFF807MUK/, /files/ENCFF483CGD/, /files/ENCFF487WCY/, /files/ENCFF765RZR/ 4383352109 ENCODE Processing Pipeline fc4f092c8a5eaebac0f7cf892da76f13 https://www.encodeproject.org/files/ENCFF511LTZ/@@download/ENCFF511LTZ.bam released s3://encode-public/2019/02/07/c3c2e56a-b508-4abb-8e13-bd11ddd0f9ae/ENCFF511LTZ.bam ENCODE3 hg19 archived ENCFF033YNZ bam bam alignments hg19 ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF863OCN/, /files/ENCFF807MUK/, /files/ENCFF483CGD/, /files/ENCFF487WCY/, /files/ENCFF765RZR/ 3592072647 ENCODE Processing Pipeline 97fbfd920a926ac52d163ce4cbce6230 https://www.encodeproject.org/files/ENCFF033YNZ/@@download/ENCFF033YNZ.bam released s3://encode-public/2019/02/07/9bb0fe39-e739-497f-b99f-5af4df1708a3/ENCFF033YNZ.bam ENCODE3 hg19 archived ENCFF555EUM bam bam unfiltered alignments GRCh38 ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF863OCN/, /files/ENCFF643CGH/, /files/ENCFF483CGD/, /files/ENCFF487WCY/, /files/ENCFF765RZR/ 4395557801 ENCODE Processing Pipeline fb6d8b02d6e8079c4a1d6416694e51eb https://www.encodeproject.org/files/ENCFF555EUM/@@download/ENCFF555EUM.bam released s3://encode-public/2019/02/07/141f5bcc-63ce-41d3-b18b-97bda7b2c58b/ENCFF555EUM.bam ENCODE3 GRCh38 archived ENCFF877WCX bam bam alignments GRCh38 ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF863OCN/, /files/ENCFF643CGH/, /files/ENCFF483CGD/, /files/ENCFF487WCY/, /files/ENCFF765RZR/ 3596204795 ENCODE Processing Pipeline 445612a88084a2db1c73074b8b887be8 https://www.encodeproject.org/files/ENCFF877WCX/@@download/ENCFF877WCX.bam released s3://encode-public/2019/02/07/5e0cff4b-0656-45ed-9bf9-95fc68201115/ENCFF877WCX.bam ENCODE3 GRCh38 archived ENCFF583BXT bam bam unfiltered alignments GRCh38 ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF487WCY/, /files/ENCFF110MCL/, /files/ENCFF483CGD/, /files/ENCFF863OCN/, /files/ENCFF765RZR/ 4391313599 ENCODE Processing Pipeline 47a903c1944c6b293e05dbd70ca5ac4a https://www.encodeproject.org/files/ENCFF583BXT/@@download/ENCFF583BXT.bam released s3://encode-public/2020/09/19/a9460bee-e467-4261-92ad-5744374a9f2f/ENCFF583BXT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF059MKS bam bam alignments GRCh38 ENCSR607UWA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000996 vagina tissue Homo sapiens DNA 2019-02-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF487WCY/, /files/ENCFF110MCL/, /files/ENCFF483CGD/, /files/ENCFF863OCN/, /files/ENCFF765RZR/ 3621923614 ENCODE Processing Pipeline 35f9fbc7ceb7404765b09cb35ee99565 https://www.encodeproject.org/files/ENCFF059MKS/@@download/ENCFF059MKS.bam released s3://encode-public/2020/09/19/1edbdb2b-be15-48af-96bf-86e1a3dfc8df/ENCFF059MKS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF422VWS fastq fastq reads ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF770ANY/ 4355259035 Richard Myers, HAIB 7c39347b749977be4bee8ff7c5879bc1 SRA:SRR8660302 https://www.encodeproject.org/files/ENCFF422VWS/@@download/ENCFF422VWS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/e5480c4e-eafd-493d-b09f-fecc90be796d/ENCFF422VWS.fastq.gz ENCFF770ANY fastq fastq reads ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF422VWS/ 4560238551 Richard Myers, HAIB 80fa1bfb094e75e10d3bdc7cf168d8d7 SRA:SRR8660302 https://www.encodeproject.org/files/ENCFF770ANY/@@download/ENCFF770ANY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/946f0de7-a747-4e98-a400-ae625d77bb25/ENCFF770ANY.fastq.gz ENCFF323NIR bam bam unfiltered alignments hg19 ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF770ANY/, /files/ENCFF807MUK/, /files/ENCFF422VWS/ 10155248961 ENCODE Processing Pipeline fab0c804c47f6b5d7ddcf3d93f217c3d https://www.encodeproject.org/files/ENCFF323NIR/@@download/ENCFF323NIR.bam released s3://encode-public/2017/02/02/8fe77218-2f82-42e9-885c-7c4b77ca8fbd/ENCFF323NIR.bam ENCODE3 hg19 archived ENCFF272ODU bam bam alignments hg19 ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF770ANY/, /files/ENCFF807MUK/, /files/ENCFF422VWS/ 7131845943 ENCODE Processing Pipeline 359521dc50cc21d97672a2262543c16c https://www.encodeproject.org/files/ENCFF272ODU/@@download/ENCFF272ODU.bam released s3://encode-public/2017/02/02/4913cc1b-62db-4672-bfe8-f5a94cbf7a76/ENCFF272ODU.bam ENCODE3 hg19 archived ENCFF099ASY bam bam unfiltered alignments GRCh38 ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF770ANY/, /files/ENCFF643CGH/, /files/ENCFF422VWS/ 10194048859 ENCODE Processing Pipeline 1dde9518e135eb26771a1596af1901f3 https://www.encodeproject.org/files/ENCFF099ASY/@@download/ENCFF099ASY.bam released s3://encode-public/2017/02/02/75a8be06-ac85-4487-8002-040a1e90e1eb/ENCFF099ASY.bam ENCODE3 GRCh38 archived ENCFF262GCW bam bam alignments GRCh38 ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF770ANY/, /files/ENCFF643CGH/, /files/ENCFF422VWS/ 7142464496 ENCODE Processing Pipeline 15d9575469c9599fc1ff04a16f099d67 https://www.encodeproject.org/files/ENCFF262GCW/@@download/ENCFF262GCW.bam released s3://encode-public/2017/02/02/d91ec5e5-993b-445b-a1cc-ea9e140fbaf1/ENCFF262GCW.bam ENCODE3 GRCh38 archived ENCFF696YEK bam bam unfiltered alignments GRCh38 ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF422VWS/, /files/ENCFF770ANY/ 10229191536 ENCODE Processing Pipeline aec2ef6c83e21ef7b601f0468596a1a6 https://www.encodeproject.org/files/ENCFF696YEK/@@download/ENCFF696YEK.bam released s3://encode-public/2020/06/06/f8fae54b-29f6-41c6-914d-ecd3d3ffd71b/ENCFF696YEK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF394VSU bam bam alignments GRCh38 ENCSR373YFT Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF422VWS/, /files/ENCFF770ANY/ 6742790521 ENCODE Processing Pipeline 0740304dc82a5554458c7d4afd58e054 https://www.encodeproject.org/files/ENCFF394VSU/@@download/ENCFF394VSU.bam released s3://encode-public/2020/06/06/fadae716-b2bd-4268-8e6e-2591e9560d6f/ENCFF394VSU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF530GXM fastq fastq reads ENCSR640NJO Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 800737021 Kevin White, UChicago 9e0ae4ceb1f1b8e6ba8871a7927e181a https://www.encodeproject.org/files/ENCFF530GXM/@@download/ENCFF530GXM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/35140d25-1585-44ce-8c3d-36fa2258be24/ENCFF530GXM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF565KCK bam bam alignments dm6 ENCSR640NJO Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF530GXM/, /files/ENCFF479RCH/ 1033952580 Kevin White, UChicago f0e70b6c6fe048850fab10ed9a733545 https://www.encodeproject.org/files/ENCFF565KCK/@@download/ENCFF565KCK.bam released s3://encode-public/2019/04/13/fb66d2ca-c435-4911-a673-8b4483923a17/ENCFF565KCK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF486ZDO bigWig bigWig read-depth normalized signal dm6 ENCSR640NJO Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF565KCK/ 17620197 Kevin White, UChicago 1f69139b44293d1289e08654a51ea08f https://www.encodeproject.org/files/ENCFF486ZDO/@@download/ENCFF486ZDO.bigWig released s3://encode-public/2019/04/16/cf5d4dab-1d4c-4ade-99dc-df1a9b67cfe5/ENCFF486ZDO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF713YGU bigWig bigWig signal of unique reads dm6 ENCSR640NJO Control ChIP-seq /fly-donors/ENCDO277ZOM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44548/'], '@type': ['Target', 'Item'], 'name': 'lola-dmelanogaster', 'label': 'lola', '@id': '/targets/lola-dmelanogaster/', 'title': 'lola (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '23c29381-751a-4938-95bc-003f8a059694', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF565KCK/ 17619555 Kevin White, UChicago f443cf428e60549dea32361819d3f94b https://www.encodeproject.org/files/ENCFF713YGU/@@download/ENCFF713YGU.bigWig released s3://encode-public/2019/04/16/29c9979a-0d79-4d7d-a21f-f14c846f0bb8/ENCFF713YGU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF893JHQ fastq fastq reads ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF957EOY/ 3147714153 Michael Snyder, Stanford fa20a2b2a24bd37c1e63ee5858056198 SRA:SRR8660321 https://www.encodeproject.org/files/ENCFF893JHQ/@@download/ENCFF893JHQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/ad094c13-1b6a-442a-814f-7add5016464e/ENCFF893JHQ.fastq.gz mild to moderate bottlenecking ENCFF957EOY fastq fastq reads ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF893JHQ/ 2690970526 Michael Snyder, Stanford 64216644d4c32e1d56e0cc1194244920 SRA:SRR8660321 https://www.encodeproject.org/files/ENCFF957EOY/@@download/ENCFF957EOY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/a1c8dd6b-f746-4a02-b600-97288683650c/ENCFF957EOY.fastq.gz mild to moderate bottlenecking ENCFF628SZJ bam bam alignments GRCh38 ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF893JHQ/, /files/ENCFF957EOY/ 4302968136 ENCODE Processing Pipeline d7c5042c8a0988158f72267760398d70 https://www.encodeproject.org/files/ENCFF628SZJ/@@download/ENCFF628SZJ.bam released s3://encode-public/2017/01/27/a923a4d3-ac55-48a5-8e53-b677c543d34c/ENCFF628SZJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF825VWI bam bam unfiltered alignments GRCh38 ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF893JHQ/, /files/ENCFF957EOY/ 5534199628 ENCODE Processing Pipeline a4bcb20c978e4d9c059384c06bbd93da https://www.encodeproject.org/files/ENCFF825VWI/@@download/ENCFF825VWI.bam released s3://encode-public/2017/01/27/65ee3adc-e27d-4d49-ac38-105e9611f74a/ENCFF825VWI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF247DOK bam bam unfiltered alignments hg19 ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF893JHQ/, /files/ENCFF957EOY/ 5525107461 ENCODE Processing Pipeline 430fbc62797dcc05400ade39bfd03b74 https://www.encodeproject.org/files/ENCFF247DOK/@@download/ENCFF247DOK.bam released s3://encode-public/2017/01/28/95efee93-0830-4c33-bbac-26c9e294b98c/ENCFF247DOK.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF683KMT bam bam alignments hg19 ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF893JHQ/, /files/ENCFF957EOY/ 4296437618 ENCODE Processing Pipeline 06f03d59b859beed1e3c70af5e5d7c18 https://www.encodeproject.org/files/ENCFF683KMT/@@download/ENCFF683KMT.bam released s3://encode-public/2017/01/28/6e1aaf44-3ae3-4c34-9069-5ec4229642e3/ENCFF683KMT.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF810CCC bam bam alignments GRCh38 ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF957EOY/, /files/ENCFF893JHQ/ 4185474881 ENCODE Processing Pipeline 625a5f820fcac6e3a92e62143a4ae175 https://www.encodeproject.org/files/ENCFF810CCC/@@download/ENCFF810CCC.bam released s3://encode-public/2020/06/02/fc45be41-5a1d-4874-a235-25b27a6285fe/ENCFF810CCC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF652RFK bam bam unfiltered alignments GRCh38 ENCSR915YUA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001621 coronary artery tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF957EOY/, /files/ENCFF893JHQ/ 5532531610 ENCODE Processing Pipeline ba1009ed731e6f50077414943b1369c5 https://www.encodeproject.org/files/ENCFF652RFK/@@download/ENCFF652RFK.bam released s3://encode-public/2020/06/02/1643d5ab-7082-46b9-a4a3-47f0386bb2a3/ENCFF652RFK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF031FKB fastq fastq reads ENCSR394EAL Control ChIP-seq /fly-donors/ENCDO495EVA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36832/'], '@type': ['Target', 'Item'], 'name': 'CG15710-dmelanogaster', 'label': 'CG15710', '@id': '/targets/CG15710-dmelanogaster/', 'title': 'CG15710 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93e336b7-a29f-4bad-8525-7ee39f1def44', 'status': 'released'} dm3 2R 16336179 16358878 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 588815573 Kevin White, UChicago 18faa958d536a0917f1700789b3072ab https://www.encodeproject.org/files/ENCFF031FKB/@@download/ENCFF031FKB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/8615f0da-9235-42e3-8ea8-acdc38a7627e/ENCFF031FKB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF830UOA bam bam alignments dm6 ENCSR394EAL Control ChIP-seq /fly-donors/ENCDO495EVA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36832/'], '@type': ['Target', 'Item'], 'name': 'CG15710-dmelanogaster', 'label': 'CG15710', '@id': '/targets/CG15710-dmelanogaster/', 'title': 'CG15710 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93e336b7-a29f-4bad-8525-7ee39f1def44', 'status': 'released'} dm3 2R 16336179 16358878 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF031FKB/, /files/ENCFF479RCH/ 778954193 Kevin White, UChicago a3113197e438b5a1f1cca218444264e2 https://www.encodeproject.org/files/ENCFF830UOA/@@download/ENCFF830UOA.bam released s3://encode-public/2018/12/07/2c0ec8a2-bf79-4a05-abc6-05a1723ce671/ENCFF830UOA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF552GRB bigWig bigWig read-depth normalized signal dm6 ENCSR394EAL Control ChIP-seq /fly-donors/ENCDO495EVA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36832/'], '@type': ['Target', 'Item'], 'name': 'CG15710-dmelanogaster', 'label': 'CG15710', '@id': '/targets/CG15710-dmelanogaster/', 'title': 'CG15710 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93e336b7-a29f-4bad-8525-7ee39f1def44', 'status': 'released'} dm3 2R 16336179 16358878 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF830UOA/ 17644537 Kevin White, UChicago 2a5c8594fa9fbbd0d33523fab1643f9d https://www.encodeproject.org/files/ENCFF552GRB/@@download/ENCFF552GRB.bigWig released s3://encode-public/2018/12/10/8bbd57e6-f7b8-4734-b6cb-1628b5be5e72/ENCFF552GRB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF172ZKJ bigWig bigWig signal of unique reads dm6 ENCSR394EAL Control ChIP-seq /fly-donors/ENCDO495EVA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36832/'], '@type': ['Target', 'Item'], 'name': 'CG15710-dmelanogaster', 'label': 'CG15710', '@id': '/targets/CG15710-dmelanogaster/', 'title': 'CG15710 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '93e336b7-a29f-4bad-8525-7ee39f1def44', 'status': 'released'} dm3 2R 16336179 16358878 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF830UOA/ 17599434 Kevin White, UChicago 12ca047f813b7f465352577e04d53780 https://www.encodeproject.org/files/ENCFF172ZKJ/@@download/ENCFF172ZKJ.bigWig released s3://encode-public/2018/12/10/1f490077-c5fb-4801-92f2-374d2e4bc4a1/ENCFF172ZKJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF061DLZ fastq fastq reads ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 725294913 Kevin White, UChicago d0081ce74c1e9d6c3ec13db509b08735 https://www.encodeproject.org/files/ENCFF061DLZ/@@download/ENCFF061DLZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/20/4c2d3b34-52e6-40de-8ee6-2818edeab684/ENCFF061DLZ.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF844LUI bam bam alignments ce10 ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF061DLZ/, /files/ENCFF331HFW/, /files/ENCFF987UMF/ 1170826132 Kevin White, UChicago e3d6454bfe57495ca310e1a7cec393db https://www.encodeproject.org/files/ENCFF844LUI/@@download/ENCFF844LUI.bam released s3://encode-public/2018/03/20/5683d739-3f7b-4ef8-94df-669b68a4603a/ENCFF844LUI.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF110NGT bigWig bigWig signal of unique reads ce10 ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF844LUI/ 9992218 Kevin White, UChicago 52f5ff6587eb4486aee294cdd25e49d4 https://www.encodeproject.org/files/ENCFF110NGT/@@download/ENCFF110NGT.bigWig released s3://encode-public/2018/03/20/6f97da57-a7ce-4c6b-9191-154347df38a7/ENCFF110NGT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF291EVK bam bam alignments ce11 ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF061DLZ/, /files/ENCFF331HFW/, /files/ENCFF586MOL/ 1171818614 Kevin White, UChicago ad3cebf325bfcedd0638705a40a961a8 https://www.encodeproject.org/files/ENCFF291EVK/@@download/ENCFF291EVK.bam released s3://encode-public/2018/03/20/5c1b1def-f0fe-4a20-8fc0-3c031820176d/ENCFF291EVK.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF767JEC bigWig bigWig signal of unique reads ce11 ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF291EVK/ 9987730 Kevin White, UChicago 3d86e138e930529343d67eae0ad4162c https://www.encodeproject.org/files/ENCFF767JEC/@@download/ENCFF767JEC.bigWig released s3://encode-public/2018/03/20/ebfe910a-865e-4264-b5be-aafbb4ed1d91/ENCFF767JEC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF331HFW fastq fastq reads ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 410533769 Kevin White, UChicago 2ce05257ac155482c9cdb26007854503 https://www.encodeproject.org/files/ENCFF331HFW/@@download/ENCFF331HFW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/05/09/f0ed70a3-cb2d-4065-82f0-3c74be5f89ca/ENCFF331HFW.fastq.gz missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF217MDZ bam bam alignments ce10 ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF331HFW/ 401182850 Kevin White, UChicago 1445ee545f7bab1412163d9a9bea3946 https://www.encodeproject.org/files/ENCFF217MDZ/@@download/ENCFF217MDZ.bam archived s3://encode-public/2016/05/10/45ad7634-a449-4af7-b803-1b81c0599540/ENCFF217MDZ.bam missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF467YYY bam bam alignments ce11 ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF331HFW/ 401511448 Kevin White, UChicago b592323d80000b19af2fd3e08290b8b7 https://www.encodeproject.org/files/ENCFF467YYY/@@download/ENCFF467YYY.bam archived s3://encode-public/2016/05/10/2055361a-99d2-4e93-ab72-0dee9f4068ca/ENCFF467YYY.bam missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF951JWH bigWig bigWig read-depth normalized signal ce10 ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF844LUI/ 10030743 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ENCSR805GAD Control ChIP-seq /worm-donors/ENCDO193GNL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181250/'], '@type': ['Target', 'Item'], 'name': 'elt-2-celegans', 'label': 'elt-2', '@id': '/targets/elt-2-celegans/', 'title': 'elt-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '4b29671c-06ec-4192-8ecc-2f19a22a9563', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF467YYY/ 9965946 Kevin White, UChicago 50fffc45cd177e15a8a909fa2cf7c79a https://www.encodeproject.org/files/ENCFF191WIS/@@download/ENCFF191WIS.bigWig archived s3://encode-public/2016/05/11/8358f0e3-c2ed-4cef-bb3c-50de21bac5ca/ENCFF191WIS.bigWig missing compliant biosample characterization, missing genetic modification reagents, missing genetic modification characterization, inconsistent platforms ENCFF847CPG fastq fastq reads ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 418277629 Bing Ren, UCSD 7b32d7cbd298caf72bb1617fe5771f6e SRA:SRR3652762 https://www.encodeproject.org/files/ENCFF847CPG/@@download/ENCFF847CPG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/8bbdf736-f3fc-4e85-b4b5-ad852463bd10/ENCFF847CPG.fastq.gz ENCFF167BYV fastq fastq reads ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1896128330 Bing Ren, UCSD 4efa66bd4d20442ad4532a498a13711c SRA:SRR3652763 https://www.encodeproject.org/files/ENCFF167BYV/@@download/ENCFF167BYV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/c0ca1d99-f1bc-4e29-a8d8-9dca5bf6b3f2/ENCFF167BYV.fastq.gz ENCFF803RGE fastq fastq reads ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 437247180 Bing Ren, UCSD 9bea39537a4b41f46ea4dd158c79d796 SRA:SRR3652764 https://www.encodeproject.org/files/ENCFF803RGE/@@download/ENCFF803RGE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/d1dd0a9f-9641-4575-9d01-abc4e9ee3242/ENCFF803RGE.fastq.gz ENCFF832IQF fastq fastq reads ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 1984860170 Bing Ren, UCSD 2961faae0255529c8ca4a13445d1cb05 SRA:SRR3652765 https://www.encodeproject.org/files/ENCFF832IQF/@@download/ENCFF832IQF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/03/17/b50cbfdc-ecd3-4264-9019-e6fc6ec13b60/ENCFF832IQF.fastq.gz ENCFF120NRT bam bam alignments mm10-minimal ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF806TVZ/, /files/ENCFF847CPG/, /files/ENCFF167BYV/ 2305305694 ENCODE Processing Pipeline 8225d3393b6b755a3cdd64d724df6f8d https://www.encodeproject.org/files/ENCFF120NRT/@@download/ENCFF120NRT.bam archived s3://encode-public/2016/03/29/e7e59c9e-a90d-4e2c-91cd-481f757021f6/ENCFF120NRT.bam ENCFF171GAD bam bam alignments mm10-minimal ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF803RGE/, /files/ENCFF806TVZ/, /files/ENCFF832IQF/ 2421775058 ENCODE Processing Pipeline c3803991e227acc46a39df675e1a7119 https://www.encodeproject.org/files/ENCFF171GAD/@@download/ENCFF171GAD.bam archived s3://encode-public/2016/03/29/5d02bbcc-5ad5-4cc4-9539-6e4f447e74b7/ENCFF171GAD.bam ENCFF076ZTM bam bam unfiltered alignments mm10 ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 1 1_1, 1_2 51 /files/ENCFF018NEO/, /files/ENCFF847CPG/, /files/ENCFF167BYV/ 3194323802 ENCODE Processing Pipeline 6edc5938409c0ff3008956e1ee849671 https://www.encodeproject.org/files/ENCFF076ZTM/@@download/ENCFF076ZTM.bam released s3://encode-public/2016/05/20/b63435d2-f89e-47a0-9d25-a60aae35fe21/ENCFF076ZTM.bam ENCODE3 mm10 archived ENCFF488BDM bam bam unfiltered alignments mm10 ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 51 /files/ENCFF803RGE/, 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alignments mm10 ENCSR680ZSE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002107 liver tissue Mus musculus DNA SDS 2016-03-30 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF832IQF/, /files/ENCFF803RGE/, /files/ENCFF309GLL/ 2434909770 ENCODE Processing Pipeline 75b5ab5aec2d00fd1831e9f7664ae985 https://www.encodeproject.org/files/ENCFF561UHK/@@download/ENCFF561UHK.bam released s3://encode-public/2020/10/08/da53a7a8-8859-4192-8fdc-d0662256bd88/ENCFF561UHK.bam ENCODE4 v1.5.1 mm10 released ENCFF302HDW fastq fastq reads ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 single-ended 8120404215 Richard Myers, HAIB f93fd2339d1cbb7e6a494fc8967f2dcb SRA:SRR5331462 https://www.encodeproject.org/files/ENCFF302HDW/@@download/ENCFF302HDW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2016/08/03/c36ee46a-69c1-42be-87e0-271d9f0b2e4b/ENCFF302HDW.fastq.gz ENCFF367RCL bam bam unfiltered alignments hg19 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF302HDW/ 8698744244 ENCODE Processing Pipeline 9b035cf720ed03a9e02cf2e23d822b98 https://www.encodeproject.org/files/ENCFF367RCL/@@download/ENCFF367RCL.bam released s3://encode-public/2016/09/20/0f8a3cf4-e7b0-469f-bb36-aec9aa513168/ENCFF367RCL.bam ENCODE3 hg19 archived ENCFF203ABR bam bam alignments hg19 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF302HDW/ 5248223369 ENCODE Processing Pipeline 125054617b3d016fc07ce1b8d0e426a0 https://www.encodeproject.org/files/ENCFF203ABR/@@download/ENCFF203ABR.bam released s3://encode-public/2016/09/20/d0c088c1-24d3-4174-9543-f91619ebe13f/ENCFF203ABR.bam ENCODE3 hg19 archived ENCFF987PBD bam bam unfiltered alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF302HDW/ 8720543015 ENCODE Processing Pipeline 0dab274db4402049badb4eeec94c3072 https://www.encodeproject.org/files/ENCFF987PBD/@@download/ENCFF987PBD.bam released s3://encode-public/2016/09/20/67a211cd-00ad-42f8-9904-f879ec8abb87/ENCFF987PBD.bam ENCODE3 GRCh38 archived ENCFF892OVV bam bam alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF302HDW/ 5256139713 ENCODE Processing Pipeline 74d1a22e677e565827b968050ed80c51 https://www.encodeproject.org/files/ENCFF892OVV/@@download/ENCFF892OVV.bam released s3://encode-public/2016/09/20/73b87869-7992-4b51-a0be-1d1955af2c49/ENCFF892OVV.bam ENCODE3 GRCh38 archived ENCFF567ZWW bam bam alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF892OVV/ 1623692976 ENCODE Processing Pipeline 6f3f92fcbca516e6981931cda33c477e https://www.encodeproject.org/files/ENCFF567ZWW/@@download/ENCFF567ZWW.bam released s3://encode-public/2016/11/03/1cbf5902-c3a9-4637-a9b1-2b7ce207209c/ENCFF567ZWW.bam ENCODE3 GRCh38 archived ENCFF874XNZ bam bam unfiltered alignments hg19 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF302HDW/ 7192397831 ENCODE Processing Pipeline 69693d05e60ab22efb635f5ce87b5c6b https://www.encodeproject.org/files/ENCFF874XNZ/@@download/ENCFF874XNZ.bam released s3://encode-public/2017/03/15/1329bb01-73e2-40d9-a8c6-a606521dbbdc/ENCFF874XNZ.bam ENCODE3 hg19 archived ENCFF309UBV bam bam alignments hg19 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF302HDW/ 5333930958 ENCODE Processing Pipeline 81e29f8f107662e118a790bf6025c8d7 https://www.encodeproject.org/files/ENCFF309UBV/@@download/ENCFF309UBV.bam released s3://encode-public/2017/03/15/61fe8fe8-837e-40b6-8cbc-894a5fcec29a/ENCFF309UBV.bam ENCODE3 hg19 archived ENCFF229FMX bam bam alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF302HDW/ 5336864774 ENCODE Processing Pipeline fe8d2e32ca3ff509b2c532b6f0f3b341 https://www.encodeproject.org/files/ENCFF229FMX/@@download/ENCFF229FMX.bam released s3://encode-public/2017/03/15/670f405e-f259-44b0-b5b6-1f03b68e939a/ENCFF229FMX.bam ENCODE3 GRCh38 archived ENCFF205IMY bam bam unfiltered alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF302HDW/ 7232258779 ENCODE Processing Pipeline 5e85367c64ed437ef8b566a34e90eee0 https://www.encodeproject.org/files/ENCFF205IMY/@@download/ENCFF205IMY.bam released s3://encode-public/2017/03/15/7694a470-557c-42d2-8116-e679ea1c1d38/ENCFF205IMY.bam ENCODE3 GRCh38 archived ENCFF510TFI bam bam alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF229FMX/ 1253460394 ENCODE Processing Pipeline a588f035889a939a67fa1b15165d7094 https://www.encodeproject.org/files/ENCFF510TFI/@@download/ENCFF510TFI.bam released s3://encode-public/2017/03/15/c7d4fb57-c579-43ba-9273-21f58c8377ae/ENCFF510TFI.bam ENCODE3 GRCh38 archived ENCFF529OSX bam bam alignments hg19 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF203ABR/ 1623649556 ENCODE Processing Pipeline 00457edade5b086db1c0062d030c821e https://www.encodeproject.org/files/ENCFF529OSX/@@download/ENCFF529OSX.bam released s3://encode-public/2017/03/16/f3cc6945-8bbe-4e0f-9b4a-b170a745c16f/ENCFF529OSX.bam ENCODE3 hg19 archived ENCFF196CDN bam bam alignments hg19 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF309UBV/ 1253536000 ENCODE Processing Pipeline d697356d48fb8efa44d758d482d0aa10 https://www.encodeproject.org/files/ENCFF196CDN/@@download/ENCFF196CDN.bam released s3://encode-public/2017/03/16/38a7188d-9aa8-493b-b348-9829f9b2c5aa/ENCFF196CDN.bam ENCODE3 hg19 archived ENCFF893ZYK bam bam unfiltered alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF302HDW/ 9384423793 ENCODE Processing Pipeline 8eb94b72c4e4abd26f3ad30c13ee078c https://www.encodeproject.org/files/ENCFF893ZYK/@@download/ENCFF893ZYK.bam released s3://encode-public/2020/05/21/12187df8-7f63-4987-bb24-976067d5128d/ENCFF893ZYK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF723HPB bam bam alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF302HDW/ 5110327659 ENCODE Processing Pipeline 29e763f3ecdee5130cf35fcd2423be6a https://www.encodeproject.org/files/ENCFF723HPB/@@download/ENCFF723HPB.bam released s3://encode-public/2020/05/21/7689ddf1-9201-4c54-a362-9b042e1f379c/ENCFF723HPB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF458BIX bam bam alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF302HDW/, /files/ENCFF110MCL/ 5539870575 ENCODE Processing Pipeline 677f4afe055b286a26a7c92113612f43 https://www.encodeproject.org/files/ENCFF458BIX/@@download/ENCFF458BIX.bam released s3://encode-public/2021/02/04/1b7c20b5-c01f-481d-9a1e-168dc3b09514/ENCFF458BIX.bam ENCODE4 v1.6.1 GRCh38 released ENCFF070IUY bam bam unfiltered alignments GRCh38 ENCSR239QGH Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF302HDW/, /files/ENCFF110MCL/ 7328210410 ENCODE Processing Pipeline c62816196333759c3631a9ad7eb81f2b https://www.encodeproject.org/files/ENCFF070IUY/@@download/ENCFF070IUY.bam released s3://encode-public/2021/02/04/67e3c44b-3267-4b6b-84e0-0936cbe85b20/ENCFF070IUY.bam ENCODE4 v1.6.1 GRCh38 released ENCFF847SHO fastq fastq reads ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF386SNG/ 2013398881 Richard Myers, HAIB 5d891ce7d45e7cc41aed2acaba615d25 SRA:SRR8660307 https://www.encodeproject.org/files/ENCFF847SHO/@@download/ENCFF847SHO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/2fa0008b-71e5-4e88-8e5b-c948803a3423/ENCFF847SHO.fastq.gz ENCFF386SNG fastq fastq reads ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF847SHO/ 2109147208 Richard Myers, HAIB ddac711e346e78d5ef6d5b824271c0e8 SRA:SRR8660307 https://www.encodeproject.org/files/ENCFF386SNG/@@download/ENCFF386SNG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/aac197cd-901a-41b1-9bc0-fcddcae47dcf/ENCFF386SNG.fastq.gz ENCFF189AXE bam bam unfiltered alignments hg19 ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF847SHO/, /files/ENCFF807MUK/, /files/ENCFF386SNG/ 4985058874 ENCODE Processing Pipeline 21430073a0d9f4c2fff47fe17487977a https://www.encodeproject.org/files/ENCFF189AXE/@@download/ENCFF189AXE.bam released s3://encode-public/2017/02/02/ad49b2fc-2fae-4642-bf74-d94cc3ec967b/ENCFF189AXE.bam ENCODE3 hg19 archived ENCFF831XEP bam bam alignments hg19 ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF847SHO/, /files/ENCFF807MUK/, /files/ENCFF386SNG/ 3659238191 ENCODE Processing Pipeline 21fea14f8726a2d7223ef8bbb359bd26 https://www.encodeproject.org/files/ENCFF831XEP/@@download/ENCFF831XEP.bam released s3://encode-public/2017/02/02/3af758f8-9d7a-4882-8534-608c674ef2a0/ENCFF831XEP.bam ENCODE3 hg19 archived ENCFF603BPO bam bam alignments GRCh38 ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF847SHO/, /files/ENCFF643CGH/, /files/ENCFF386SNG/ 3664022876 ENCODE Processing Pipeline 28b5771ea6de563dc149a9a175ead08f https://www.encodeproject.org/files/ENCFF603BPO/@@download/ENCFF603BPO.bam released s3://encode-public/2017/02/02/07624817-d39e-4844-a609-9df321a6c7d7/ENCFF603BPO.bam ENCODE3 GRCh38 archived ENCFF928MXV bam bam unfiltered alignments GRCh38 ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF847SHO/, /files/ENCFF643CGH/, /files/ENCFF386SNG/ 5003644698 ENCODE Processing Pipeline f8ec2348c6d72e1268cf4bb0ef0587c2 https://www.encodeproject.org/files/ENCFF928MXV/@@download/ENCFF928MXV.bam released s3://encode-public/2017/02/02/053b559c-a755-49e6-9a3d-465aca6ebf70/ENCFF928MXV.bam ENCODE3 GRCh38 archived ENCFF282GJN bam bam unfiltered alignments GRCh38 ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF847SHO/, /files/ENCFF386SNG/ 4968882296 ENCODE Processing Pipeline 20c8cf3f5eb3278d353de46a87355439 https://www.encodeproject.org/files/ENCFF282GJN/@@download/ENCFF282GJN.bam released s3://encode-public/2020/06/06/a3e059a3-1d5b-4246-b951-e215446ed877/ENCFF282GJN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF689DTF bam bam alignments GRCh38 ENCSR384HXX Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF847SHO/, /files/ENCFF386SNG/ 3483688837 ENCODE Processing Pipeline 743f71621a73c6f7efafde02e145798c https://www.encodeproject.org/files/ENCFF689DTF/@@download/ENCFF689DTF.bam released s3://encode-public/2020/06/06/6647fbbd-1fe0-4d45-9428-95563e27ed59/ENCFF689DTF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF000BVZ bam bam alignments hg19 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF000BWK/ 796317121 Bradley Bernstein, Broad f03cbc4333e2bbc46172c86bc97bb4b8 https://www.encodeproject.org/files/ENCFF000BVZ/@@download/ENCFF000BVZ.bam archived s3://encode-public/2010/11/16/6a12caa5-a4ba-4047-915e-b665cc167433/ENCFF000BVZ.bam Lab custom hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF000BWA bigWig bigWig signal hg19 ENCSR000AKY Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 413310279 Bradley Bernstein, Broad 0adb04af2206070e70a5cfd1448271b2 https://www.encodeproject.org/files/ENCFF000BWA/@@download/ENCFF000BWA.bigWig archived s3://encode-public/2010/11/16/d3784a13-f362-4b46-afdc-00b8085bd448/ENCFF000BWA.bigWig Lab custom hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF000BWK fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 single-ended 840020086 Bradley Bernstein, Broad d5471e71ef5c3b2029311fc0274aa011 SRA:SRR5331213 https://www.encodeproject.org/files/ENCFF000BWK/@@download/ENCFF000BWK.fastq.gz Illumina Genome Analyzer IIe released s3://encode-public/2010/11/16/804c0801-07f2-4ae9-92e0-5f3c93e693bb/ENCFF000BWK.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF666YXZ bam bam alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 /files/ENCFF994FIB/, /files/ENCFF283HQV/, /files/ENCFF110MCL/ 568218947 ENCODE Processing Pipeline 0250c5c22ffb08934d3ab49644c0a577 https://www.encodeproject.org/files/ENCFF666YXZ/@@download/ENCFF666YXZ.bam released s3://encode-public/2020/09/16/978e24d0-bd92-4de8-aaba-6d817dd3c76a/ENCFF666YXZ.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed run types, inconsistent platforms ENCFF226FKB bam bam alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000BWK/ 673312621 ENCODE Processing Pipeline 88b3b0d5259a43b442d81e529f5641e8 https://www.encodeproject.org/files/ENCFF226FKB/@@download/ENCFF226FKB.bam released s3://encode-public/2020/09/16/9864b703-ccc5-4a4d-bf3b-dc13b582a833/ENCFF226FKB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed run types, inconsistent platforms ENCFF117OYK bam bam unfiltered alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BWK/ 1129922257 ENCODE Processing Pipeline 50aa9a56c3cd4dd1361d7d73360ccc2a https://www.encodeproject.org/files/ENCFF117OYK/@@download/ENCFF117OYK.bam released s3://encode-public/2016/07/13/fd8a53fb-08f3-4e63-92b7-2bbb5bba3c68/ENCFF117OYK.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF392XRJ bam bam alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BWK/ 606048914 ENCODE Processing Pipeline 9a7cc9d99fa7ae5868364d0124db8862 https://www.encodeproject.org/files/ENCFF392XRJ/@@download/ENCFF392XRJ.bam released s3://encode-public/2016/07/13/248369b3-71b7-495d-a74d-57ecd925a032/ENCFF392XRJ.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF977WHL fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 25 paired-ended 1 /files/ENCFF402EPP/ 502347678 Bradley Bernstein, Broad dbdd593db3629e142d2af25484ba7f20 https://www.encodeproject.org/files/ENCFF977WHL/@@download/ENCFF977WHL.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/382c46b0-d56e-42dc-ae4d-3660752e2290/ENCFF977WHL.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF885VML fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 25 paired-ended 1 /files/ENCFF222TAO/ 494381640 Bradley Bernstein, Broad a4b67c62d173556fc72084f2d09e3b2b https://www.encodeproject.org/files/ENCFF885VML/@@download/ENCFF885VML.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/501cf5ac-71a6-4b02-83c2-2e4369eb2a68/ENCFF885VML.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms inconsistent read count ENCFF994FIB fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 308166280 Bradley Bernstein, Broad f90ed903d51532e9d10dbf2989bb3255 SRA:SRR5331211 https://www.encodeproject.org/files/ENCFF994FIB/@@download/ENCFF994FIB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/c1be51ff-9ea0-442c-9773-c9a452d02ca0/ENCFF994FIB.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF402EPP fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 25 paired-ended 2 /files/ENCFF977WHL/ 507005691 Bradley Bernstein, Broad b680506001319dee56d2e2699de96cb4 https://www.encodeproject.org/files/ENCFF402EPP/@@download/ENCFF402EPP.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/e640fc2f-164a-45d1-9bf0-ae87b0cfa287/ENCFF402EPP.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF222TAO fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_1 25 paired-ended 2 /files/ENCFF885VML/ 497688713 Bradley Bernstein, Broad 987610ddbd42cc37e6d7ae49e1f6671a https://www.encodeproject.org/files/ENCFF222TAO/@@download/ENCFF222TAO.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/71c37dfe-7ca8-40a0-a345-399d17fdeb7c/ENCFF222TAO.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms inconsistent read count ENCFF156ECZ fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 paired-ended 1 /files/ENCFF199NQH/ 530270984 Bradley Bernstein, Broad 583b33ffc6a66ba25db7c1b28cc39c87 https://www.encodeproject.org/files/ENCFF156ECZ/@@download/ENCFF156ECZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/4f327079-e5bd-4190-8d32-d26871c0428e/ENCFF156ECZ.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF199NQH fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 25 paired-ended 2 /files/ENCFF156ECZ/ 413441732 Bradley Bernstein, Broad 4299366053572b77b3c6cfcd1c485d83 https://www.encodeproject.org/files/ENCFF199NQH/@@download/ENCFF199NQH.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/8faa7eaf-32a2-4a66-8950-eeba91ebab58/ENCFF199NQH.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF561WFK fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 paired-ended 1 /files/ENCFF185XBW/ 539928840 Bradley Bernstein, Broad 2cb72995b9b6cd6f89c7b65cbe6d356c https://www.encodeproject.org/files/ENCFF561WFK/@@download/ENCFF561WFK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/39158708-b04d-4b59-bbf0-0c0a93163a31/ENCFF561WFK.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF185XBW fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 25 paired-ended 2 /files/ENCFF561WFK/ 424415299 Bradley Bernstein, Broad 11834d766e50436637e79a2152c877f5 https://www.encodeproject.org/files/ENCFF185XBW/@@download/ENCFF185XBW.fastq.gz Illumina HiSeq 2500 archived s3://encode-public/2016/10/12/4fd7d362-b2fd-4a17-8279-29c71744b2d1/ENCFF185XBW.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF283HQV fastq fastq reads ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 single-ended 308416435 Bradley Bernstein, Broad 49f1eda4b0f38ffc25c416afe139a216 SRA:SRR5331212 https://www.encodeproject.org/files/ENCFF283HQV/@@download/ENCFF283HQV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/c1534e32-4036-4815-8519-657d80031599/ENCFF283HQV.fastq.gz low read depth, low read length, mixed run types, inconsistent platforms ENCFF574XYY bam bam alignments hg19 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BWK/ 606416246 ENCODE Processing Pipeline fde38dd65bddd06b4e8d1a6478aa1d2a https://www.encodeproject.org/files/ENCFF574XYY/@@download/ENCFF574XYY.bam released s3://encode-public/2016/10/29/7dcfe25b-ee03-4725-b90d-085463c2f2b1/ENCFF574XYY.bam ENCODE3 hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF505AGU bam bam unfiltered alignments hg19 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BWK/ 1125586481 ENCODE Processing Pipeline 9263b76d2903a38e35142e040cb5dcaa https://www.encodeproject.org/files/ENCFF505AGU/@@download/ENCFF505AGU.bam released s3://encode-public/2016/10/29/20d8f559-8a1c-46bc-9485-4b6453fa9c40/ENCFF505AGU.bam ENCODE3 hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF237KKO bam bam unfiltered alignments hg19 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 /files/ENCFF283HQV/, /files/ENCFF807MUK/, /files/ENCFF994FIB/ 732366581 ENCODE Processing Pipeline d5ecb60d5f7f330da3c75ba7e4c5e83e https://www.encodeproject.org/files/ENCFF237KKO/@@download/ENCFF237KKO.bam released s3://encode-public/2016/11/01/bfcfb665-1881-4804-a27f-e8351ebfa670/ENCFF237KKO.bam ENCODE3 hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF296OHW bam bam unfiltered alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 /files/ENCFF283HQV/, /files/ENCFF643CGH/, /files/ENCFF994FIB/ 737056106 ENCODE Processing Pipeline f740753d68eb402baa3f550789ac65c3 https://www.encodeproject.org/files/ENCFF296OHW/@@download/ENCFF296OHW.bam released s3://encode-public/2016/11/01/cef3fb48-8af6-4d41-b369-a9bb07956d88/ENCFF296OHW.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF829HZY bam bam alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 /files/ENCFF283HQV/, /files/ENCFF643CGH/, /files/ENCFF994FIB/ 517571359 ENCODE Processing Pipeline ce193342cb10d0b89d0855183fa92077 https://www.encodeproject.org/files/ENCFF829HZY/@@download/ENCFF829HZY.bam released s3://encode-public/2016/11/01/7eeabeea-33f5-40a7-bf98-6f1cbb9853fb/ENCFF829HZY.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF245PJA bam bam alignments hg19 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 /files/ENCFF283HQV/, /files/ENCFF807MUK/, /files/ENCFF994FIB/ 517906447 ENCODE Processing Pipeline 4fdf3d5d9f5ab5e1d7fe42e436a993e1 https://www.encodeproject.org/files/ENCFF245PJA/@@download/ENCFF245PJA.bam released s3://encode-public/2016/11/01/175570e0-1c30-4972-bfbc-cfd1bbdc1187/ENCFF245PJA.bam ENCODE3 hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF192XTF tagAlign tagAlign alignments hg19 ENCSR000AKY Control ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 123354708 Anshul Kundaje, Stanford 60c7ce80d437686d9b26a884ada158ad https://www.encodeproject.org/files/ENCFF192XTF/@@download/ENCFF192XTF.tagAlign.gz archived s3://encode-public/2016/07/19/b5bb6013-8296-4d5e-979e-736cd9bdf302/ENCFF192XTF.tagAlign.gz Lab custom hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF893MMO bam bam alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF561WFK/, /files/ENCFF156ECZ/ 845954711 ENCODE Processing Pipeline fb522364b6112679845e09da2cebe334 https://www.encodeproject.org/files/ENCFF893MMO/@@download/ENCFF893MMO.bam released s3://encode-public/2017/03/13/23537e71-1aff-4548-900e-0c6b0c673235/ENCFF893MMO.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF019ENS bam bam unfiltered alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF561WFK/, /files/ENCFF156ECZ/ 1255561933 ENCODE Processing Pipeline 6519658e9cf2bbb0517afa8bda017f57 https://www.encodeproject.org/files/ENCFF019ENS/@@download/ENCFF019ENS.bam released s3://encode-public/2017/03/13/56bf24f0-cedb-42b0-b8e0-b15760d689c9/ENCFF019ENS.bam ENCODE3 GRCh38 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF150ZCH bam bam unfiltered alignments hg19 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF561WFK/, /files/ENCFF156ECZ/ 1248008363 ENCODE Processing Pipeline d476d33e41ed85c7bf9588d81bc63e73 https://www.encodeproject.org/files/ENCFF150ZCH/@@download/ENCFF150ZCH.bam released s3://encode-public/2017/03/13/294ecca5-b2b4-4041-86fc-331d61c019fc/ENCFF150ZCH.bam ENCODE3 hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF319GFP bam bam alignments hg19 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF561WFK/, /files/ENCFF156ECZ/ 846394729 ENCODE Processing Pipeline e1c7a338af5fd6fe8dc9cbe4562309bb https://www.encodeproject.org/files/ENCFF319GFP/@@download/ENCFF319GFP.bam released s3://encode-public/2017/03/13/e0721e8a-e56d-45cc-a252-c6451ad4d20a/ENCFF319GFP.bam ENCODE3 hg19 archived low read depth, low read length, mixed run types, inconsistent platforms ENCFF734LIB bam bam unfiltered alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 2 2_2 36 /files/ENCFF994FIB/, /files/ENCFF283HQV/, /files/ENCFF110MCL/ 717883997 ENCODE Processing Pipeline 0af1844b705fe67234f59a0bd36df5e6 https://www.encodeproject.org/files/ENCFF734LIB/@@download/ENCFF734LIB.bam released s3://encode-public/2020/09/16/6dfeb73e-0693-4c70-9da8-75d535da6b82/ENCFF734LIB.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed run types, inconsistent platforms ENCFF087PCR bam bam unfiltered alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000BWK/ 1110561990 ENCODE Processing Pipeline 1a47b8dbe921bc94111a417fbcd2e33e https://www.encodeproject.org/files/ENCFF087PCR/@@download/ENCFF087PCR.bam released s3://encode-public/2020/09/16/4c1e02b2-5ce1-42bb-b6bd-8ce4b148f1e0/ENCFF087PCR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed run types, inconsistent platforms ENCFF149XUR bam bam unfiltered alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF561WFK/, /files/ENCFF156ECZ/ 1221589283 ENCODE Processing Pipeline dc5b7c5956a11a0ec3557c2e20a1efcd https://www.encodeproject.org/files/ENCFF149XUR/@@download/ENCFF149XUR.bam released s3://encode-public/2020/09/16/f104ced2-e605-4c58-96fd-b836989addee/ENCFF149XUR.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed run types, inconsistent platforms ENCFF420ARY bam bam alignments GRCh38 ENCSR000AKY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 200-600 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF561WFK/, /files/ENCFF156ECZ/ 929550732 ENCODE Processing Pipeline a06c7eea4bfcc896b51a75b0d9d54ea3 https://www.encodeproject.org/files/ENCFF420ARY/@@download/ENCFF420ARY.bam released s3://encode-public/2020/09/16/0cb712ce-443a-4334-a33f-31056a2b30f5/ENCFF420ARY.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length, mixed run types, inconsistent platforms ENCFF326ENE fastq fastq reads ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF851KCU/ 2115986947 Michael Snyder, Stanford 489f93703f7890983911380728e3fae7 SRA:SRR6212596 https://www.encodeproject.org/files/ENCFF326ENE/@@download/ENCFF326ENE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/83bdf94b-1d4f-406d-9251-7aa163f38758/ENCFF326ENE.fastq.gz mild to moderate bottlenecking ENCFF851KCU fastq fastq reads ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF326ENE/ 2178410834 Michael Snyder, Stanford 33150f8ba7ecb6a32b3003ed3735fcd4 SRA:SRR6212596 https://www.encodeproject.org/files/ENCFF851KCU/@@download/ENCFF851KCU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/27/ab554864-f8fa-43b3-a289-be3727ac84d9/ENCFF851KCU.fastq.gz mild to moderate bottlenecking ENCFF587KOP bam bam unfiltered alignments GRCh38 ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF326ENE/, /files/ENCFF851KCU/, /files/ENCFF643CGH/ 4753191924 ENCODE Processing Pipeline 6e990c4adda20e32e6f2e2362c73f88d https://www.encodeproject.org/files/ENCFF587KOP/@@download/ENCFF587KOP.bam released s3://encode-public/2016/05/06/ec6a863c-57f2-45fd-9665-5d55c1874ef4/ENCFF587KOP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF987UNO bam bam alignments GRCh38 ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF326ENE/, /files/ENCFF851KCU/, /files/ENCFF643CGH/ 3774487939 ENCODE Processing Pipeline 0c832ff662f0c186d62fc00f676392e1 https://www.encodeproject.org/files/ENCFF987UNO/@@download/ENCFF987UNO.bam released s3://encode-public/2016/05/06/5229d12b-d428-430e-adb6-192cf1fac019/ENCFF987UNO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF468IIX bam bam unfiltered alignments hg19 ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF326ENE/, /files/ENCFF851KCU/, /files/ENCFF807MUK/ 4746711892 ENCODE Processing Pipeline 6c02d820702ddc3a295f6a0146acea97 https://www.encodeproject.org/files/ENCFF468IIX/@@download/ENCFF468IIX.bam released s3://encode-public/2016/12/06/1b794424-157e-48b4-a7bb-262837af59fe/ENCFF468IIX.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF753TRQ bam bam alignments hg19 ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF326ENE/, /files/ENCFF851KCU/, /files/ENCFF807MUK/ 3767378493 ENCODE Processing Pipeline e965e32775195b280b7dfd7e7b47666a https://www.encodeproject.org/files/ENCFF753TRQ/@@download/ENCFF753TRQ.bam released s3://encode-public/2016/12/06/7a3b3a2c-a583-41dc-add7-db2b52ac2efe/ENCFF753TRQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF858XIL bam bam unfiltered alignments GRCh38 ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF326ENE/, /files/ENCFF851KCU/ 4730520452 ENCODE Processing Pipeline 06b8e59161838db182e93b6dd2ab8ee5 https://www.encodeproject.org/files/ENCFF858XIL/@@download/ENCFF858XIL.bam released s3://encode-public/2020/06/03/eeb063ac-c611-4dea-93ab-3f8b640d7fbb/ENCFF858XIL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF586WHQ bam bam alignments GRCh38 ENCSR081KET Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF326ENE/, /files/ENCFF851KCU/ 3728007295 ENCODE Processing Pipeline 05295bb294949bbfba45ecfeb34e4331 https://www.encodeproject.org/files/ENCFF586WHQ/@@download/ENCFF586WHQ.bam released s3://encode-public/2020/06/03/4c1fbff8-6ad5-4e8f-a37b-6801e03356d6/ENCFF586WHQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF190WRH bam bam unfiltered alignments hg19 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFH/, /files/ENCFF807MUK/, /files/ENCFF002EFF/ 8461150833 ENCODE Processing Pipeline 8546b62ae0a594847efa44214fe4b728 https://www.encodeproject.org/files/ENCFF190WRH/@@download/ENCFF190WRH.bam released s3://encode-public/2018/02/21/73f5af32-c126-4b53-b654-58ce5c17af81/ENCFF190WRH.bam ENCODE3 hg19 archived ENCFF172APG bam bam unfiltered alignments hg19 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFA/, /files/ENCFF002EFD/ 8028116254 ENCODE Processing Pipeline c962af5a9b9269155d72354608fc69c6 https://www.encodeproject.org/files/ENCFF172APG/@@download/ENCFF172APG.bam released s3://encode-public/2018/02/22/863b4c01-3a99-47c8-a0c1-eab92013bc04/ENCFF172APG.bam ENCODE3 hg19 archived ENCFF002EFA fastq fastq reads ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EFD/ 3755138713 Michael Snyder, Stanford 0ba87f432a924771a5be042a18ae8bec SRA:SRR5111210 https://www.encodeproject.org/files/ENCFF002EFA/@@download/ENCFF002EFA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/a4e3331e-83ac-46f5-9ffa-d82f50165429/ENCFF002EFA.fastq.gz ENCFF002EFD fastq fastq reads ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EFA/ 3857189318 Michael Snyder, Stanford 0fba60a80a6093fd99b4152414c34d18 SRA:SRR5111210 https://www.encodeproject.org/files/ENCFF002EFD/@@download/ENCFF002EFD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/372ccb73-5976-4327-85b6-6873615cafe3/ENCFF002EFD.fastq.gz ENCFF002EFF fastq fastq reads ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EFH/ 4054752715 Michael Snyder, Stanford f134e3f8efc0145cfefe40cdea67af9c SRA:SRR5111209 https://www.encodeproject.org/files/ENCFF002EFF/@@download/ENCFF002EFF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/7345af40-6dd1-4251-9861-e0c176e09a84/ENCFF002EFF.fastq.gz ENCFF002EFH fastq fastq reads ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EFF/ 3945053323 Michael Snyder, Stanford dcc9561f57883de8991e0c1915cdc2fb SRA:SRR5111209 https://www.encodeproject.org/files/ENCFF002EFH/@@download/ENCFF002EFH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/bd0d6238-3637-476c-a04c-b82c3b112c0b/ENCFF002EFH.fastq.gz ENCFF051LWI bam bam alignments hg19 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFA/, /files/ENCFF002EFD/ 6788699542 ENCODE Processing Pipeline be0146495c9e025cb6adb38e0737f423 https://www.encodeproject.org/files/ENCFF051LWI/@@download/ENCFF051LWI.bam released s3://encode-public/2015/10/28/1ddaccbf-8972-4692-be8f-3e9f77940ae3/ENCFF051LWI.bam ENCODE3 hg19 archived ENCFF581ZJL bam bam alignments hg19 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFH/, /files/ENCFF807MUK/, /files/ENCFF002EFF/ 7326508021 ENCODE Processing Pipeline c236e7ea68ee65c745622c836bed1ca1 https://www.encodeproject.org/files/ENCFF581ZJL/@@download/ENCFF581ZJL.bam released s3://encode-public/2015/10/28/645005bd-ce07-431f-b1f8-b73cfb411fed/ENCFF581ZJL.bam ENCODE3 hg19 archived ENCFF122LEY bam bam unfiltered alignments GRCh38 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFA/, /files/ENCFF002EFD/ 8038212967 ENCODE Processing Pipeline e99ad522e6e489dbbb0568b2e425c7d2 https://www.encodeproject.org/files/ENCFF122LEY/@@download/ENCFF122LEY.bam released s3://encode-public/2016/05/06/6e2d8fa1-83e4-4958-b750-f1035216951e/ENCFF122LEY.bam ENCODE3 GRCh38 archived ENCFF739EFS bam bam unfiltered alignments GRCh38 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFH/, /files/ENCFF002EFF/, /files/ENCFF643CGH/ 8472399304 ENCODE Processing Pipeline cdb6882a3aee696430183aba258cc756 https://www.encodeproject.org/files/ENCFF739EFS/@@download/ENCFF739EFS.bam released s3://encode-public/2016/05/06/b16db696-0705-4396-9b65-ef61b91dc123/ENCFF739EFS.bam ENCODE3 GRCh38 archived ENCFF227IZS bam bam alignments GRCh38 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFA/, /files/ENCFF002EFD/ 6792660900 ENCODE Processing Pipeline d65c74b56c13e54415863f5f47dcd62e https://www.encodeproject.org/files/ENCFF227IZS/@@download/ENCFF227IZS.bam released s3://encode-public/2016/05/06/9f260dab-14a7-498e-be88-08ba4c94338b/ENCFF227IZS.bam ENCODE3 GRCh38 archived ENCFF910IKB bam bam alignments GRCh38 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFH/, /files/ENCFF002EFF/, /files/ENCFF643CGH/ 7331378107 ENCODE Processing Pipeline d9516b6163329c8887ab0dab037716cd https://www.encodeproject.org/files/ENCFF910IKB/@@download/ENCFF910IKB.bam released s3://encode-public/2016/05/06/8996e648-0f6f-4741-9dfc-9cea23acd139/ENCFF910IKB.bam ENCODE3 GRCh38 archived ENCFF003KNB bam bam unfiltered alignments GRCh38 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002EFF/, /files/ENCFF002EFH/ 8320315930 ENCODE Processing Pipeline 935e5a4e43b8f40a489149605382e6b8 https://www.encodeproject.org/files/ENCFF003KNB/@@download/ENCFF003KNB.bam released s3://encode-public/2020/06/03/09abce6b-6651-41aa-a8e4-31edb6740a30/ENCFF003KNB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF822ODT bam bam alignments GRCh38 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EFD/, /files/ENCFF002EFA/ 6334520471 ENCODE Processing Pipeline 5c26774679a847675e59dfa5514ca026 https://www.encodeproject.org/files/ENCFF822ODT/@@download/ENCFF822ODT.bam released s3://encode-public/2020/06/03/4a029b43-96a9-4d81-a22b-2a985864d136/ENCFF822ODT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF107AAC bam bam unfiltered alignments GRCh38 ENCSR173USI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EFD/, /files/ENCFF002EFA/ 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2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF633HXG/, /files/ENCFF643CGH/, /files/ENCFF886BMC/ 3549686755 ENCODE Processing Pipeline 8006f5d978975ed52f1f34573d5917ac https://www.encodeproject.org/files/ENCFF405SDZ/@@download/ENCFF405SDZ.bam released s3://encode-public/2017/01/27/c6abae49-33cf-44fc-9c80-18356272d665/ENCFF405SDZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF101KNE bam bam unfiltered alignments GRCh38 ENCSR689CZH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF633HXG/, /files/ENCFF643CGH/, /files/ENCFF886BMC/ 4618986356 ENCODE Processing Pipeline 39716942b132245fd9ac9f71498445da https://www.encodeproject.org/files/ENCFF101KNE/@@download/ENCFF101KNE.bam released s3://encode-public/2017/01/27/287f2c96-ede3-4b05-ac5e-0c94c3473391/ENCFF101KNE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF311JZB bam bam unfiltered alignments hg19 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hg19 archived mild to moderate bottlenecking ENCFF041SYE bam bam unfiltered alignments GRCh38 ENCSR689CZH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF633HXG/, /files/ENCFF886BMC/ 4620113309 ENCODE Processing Pipeline c3a10491a11e78bae2f0f7041de063a2 https://www.encodeproject.org/files/ENCFF041SYE/@@download/ENCFF041SYE.bam released s3://encode-public/2020/06/02/686e6f91-ec32-4326-8346-5c669197af8e/ENCFF041SYE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF454JUD bam bam alignments GRCh38 ENCSR689CZH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF633HXG/, /files/ENCFF886BMC/ 3463555665 ENCODE Processing Pipeline c91ea70e76b3a5c7d7bd84697456e391 https://www.encodeproject.org/files/ENCFF454JUD/@@download/ENCFF454JUD.bam released s3://encode-public/2020/06/02/954ba4b9-d64e-4d72-a906-dd419226fa00/ENCFF454JUD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF953GZP fastq fastq reads ENCSR213GWR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF067POA/ 3604719952 Richard Myers, HAIB ddd5083dd709b08c5ef58ad3c6d8feb3 SRA:SRR6212828 https://www.encodeproject.org/files/ENCFF953GZP/@@download/ENCFF953GZP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/c3d18f1a-9dd5-4f24-8ce0-891a5b50a88e/ENCFF953GZP.fastq.gz ENCFF067POA fastq fastq reads ENCSR213GWR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF953GZP/ 3789994365 Richard 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(generic) 1 1_1 76 /files/ENCFF067POA/, /files/ENCFF643CGH/, /files/ENCFF953GZP/ 8600349000 ENCODE Processing Pipeline c945c7f9575731ad42479a82d979faac https://www.encodeproject.org/files/ENCFF326WEF/@@download/ENCFF326WEF.bam released s3://encode-public/2017/02/02/5ecff262-f687-4345-a213-2b1e92d3f4d1/ENCFF326WEF.bam ENCODE3 GRCh38 archived ENCFF549SBD bam bam alignments GRCh38 ENCSR213GWR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF067POA/, /files/ENCFF643CGH/, /files/ENCFF953GZP/ 5404901186 ENCODE Processing Pipeline 0d4bcc72a2056a66d0873d418e7b9745 https://www.encodeproject.org/files/ENCFF549SBD/@@download/ENCFF549SBD.bam released s3://encode-public/2017/02/02/634f2b1d-5347-4321-9644-4219453f8959/ENCFF549SBD.bam ENCODE3 GRCh38 archived ENCFF989MBL bam bam alignments hg19 ENCSR213GWR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF067POA/, /files/ENCFF807MUK/, /files/ENCFF953GZP/ 5396513282 ENCODE Processing Pipeline 391130883dd932ea2443d8204b4a703b https://www.encodeproject.org/files/ENCFF989MBL/@@download/ENCFF989MBL.bam released s3://encode-public/2017/02/02/55b5338e-1412-4a25-b30c-4c42e1a43485/ENCFF989MBL.bam ENCODE3 hg19 archived ENCFF486VMO bam bam unfiltered alignments GRCh38 ENCSR213GWR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF067POA/, /files/ENCFF953GZP/, /files/ENCFF110MCL/ 8781166874 ENCODE Processing Pipeline 7ea5c62727f08e057b7038403d342270 https://www.encodeproject.org/files/ENCFF486VMO/@@download/ENCFF486VMO.bam released s3://encode-public/2020/10/28/642fc8d9-4bfd-4e7c-b984-b91ec0815132/ENCFF486VMO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF502YOY bam bam alignments GRCh38 ENCSR213GWR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF067POA/, /files/ENCFF953GZP/, /files/ENCFF110MCL/ 5094446357 ENCODE Processing Pipeline f8432ebf6b636e8416db8f8196f7a338 https://www.encodeproject.org/files/ENCFF502YOY/@@download/ENCFF502YOY.bam released s3://encode-public/2020/10/28/844ca57e-64e9-4b1d-8949-75c08e6ddecf/ENCFF502YOY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF965FKX fastq fastq reads ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 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'14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF965FKX/, /files/ENCFF830NMV/ 3845985639 ENCODE Processing Pipeline e840225203c321b5ba22328892ab7e92 https://www.encodeproject.org/files/ENCFF008RUQ/@@download/ENCFF008RUQ.bam archived s3://encode-public/2016/08/23/cb0c107e-ee87-445a-9b0c-12fe55cadc58/ENCFF008RUQ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF575BIM bam bam unfiltered alignments hg19 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF965FKX/, /files/ENCFF830NMV/ 5540941951 ENCODE Processing Pipeline 7b6e886cb5a33834bc132ad4ddaebb65 https://www.encodeproject.org/files/ENCFF575BIM/@@download/ENCFF575BIM.bam archived s3://encode-public/2016/08/23/044c0c8a-b54f-4743-ae0c-4cd8d70a5c6e/ENCFF575BIM.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF620NNA bam bam unfiltered alignments GRCh38 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF965FKX/, /files/ENCFF830NMV/ 5561386730 ENCODE Processing Pipeline 00024c95071b79380334c1debb5033e0 https://www.encodeproject.org/files/ENCFF620NNA/@@download/ENCFF620NNA.bam archived s3://encode-public/2016/12/10/52482503-52a9-4259-bd65-5d00aed08c68/ENCFF620NNA.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF875SXG bam bam alignments GRCh38 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF965FKX/, /files/ENCFF830NMV/ 3847629323 ENCODE Processing Pipeline 6a1ecfe31849edbf7baaee4a5ebc7cb8 https://www.encodeproject.org/files/ENCFF875SXG/@@download/ENCFF875SXG.bam archived s3://encode-public/2016/12/10/f7028a78-d898-4ff8-bfe7-b2f55eb82bc5/ENCFF875SXG.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF953WVU fastq fastq reads ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF911YKD/ 7034259098 Michael Snyder, Stanford 845eaa254ead9b2c5cf5c5082f205f06 SRA:SRR6212853 https://www.encodeproject.org/files/ENCFF953WVU/@@download/ENCFF953WVU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/31/ec861590-9c26-4ea5-aaae-89b21efcdfd1/ENCFF953WVU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF911YKD fastq fastq reads ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF953WVU/ 7136822779 Michael Snyder, Stanford 6a92088cc53b07a972e800a82ab00d27 SRA:SRR6212853 https://www.encodeproject.org/files/ENCFF911YKD/@@download/ENCFF911YKD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/03/31/9235772e-40b0-4473-9e1f-1328fea23c7a/ENCFF911YKD.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF666KPK bam bam alignments hg19 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF953WVU/, /files/ENCFF911YKD/ 10530999055 ENCODE Processing Pipeline c99c1c7034d22640453b14feeefdbe83 https://www.encodeproject.org/files/ENCFF666KPK/@@download/ENCFF666KPK.bam released s3://encode-public/2017/04/09/bc53154f-36a7-4fcd-a583-1b45c602e30d/ENCFF666KPK.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF713PVH bam bam alignments GRCh38 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF953WVU/, /files/ENCFF911YKD/ 10535365694 ENCODE Processing Pipeline 27df3a66b928c9f881904500879557e3 https://www.encodeproject.org/files/ENCFF713PVH/@@download/ENCFF713PVH.bam released s3://encode-public/2017/04/09/2840e2f5-2017-4781-a1d8-fac6a4b72f82/ENCFF713PVH.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF065XTC bam bam unfiltered alignments GRCh38 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF953WVU/, /files/ENCFF911YKD/ 13864145779 ENCODE Processing Pipeline 787c2daf966eb682e0aa0ac1f9f0cde1 https://www.encodeproject.org/files/ENCFF065XTC/@@download/ENCFF065XTC.bam released s3://encode-public/2017/04/09/72ee77a8-bd35-4000-b583-34355db6d200/ENCFF065XTC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF586MZT bam bam unfiltered alignments hg19 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF953WVU/, /files/ENCFF911YKD/ 13834507664 ENCODE Processing Pipeline bb029e185a20d28448d38c5092de81cf https://www.encodeproject.org/files/ENCFF586MZT/@@download/ENCFF586MZT.bam released s3://encode-public/2017/04/09/86082308-7f0d-49a9-8b55-4b047a01a85b/ENCFF586MZT.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF450OMX bam bam alignments GRCh38 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF953WVU/, /files/ENCFF911YKD/ 10759127411 ENCODE Processing Pipeline c24492663d5e468df217530683cb782f https://www.encodeproject.org/files/ENCFF450OMX/@@download/ENCFF450OMX.bam released s3://encode-public/2020/06/02/73bfb235-25cf-4afc-b772-2f4dcf254a73/ENCFF450OMX.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF944YQY bam bam unfiltered alignments GRCh38 ENCSR159MTA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-64'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1054/'], '@type': ['Target', 'Item'], 'name': 'CEBPG-human', 'label': 'CEBPG', '@id': '/targets/CEBPG-human/', 'title': 'CEBPG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '3091c41a-da23-4bca-8e63-b3046b71caa6', 'status': 'released'} hg19 19 33642389 33900257 DNA 2016-08-24 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF953WVU/, /files/ENCFF911YKD/ 13875285168 ENCODE Processing Pipeline 8a13dd2b6c819107fe55e194886fddb5 https://www.encodeproject.org/files/ENCFF944YQY/@@download/ENCFF944YQY.bam released s3://encode-public/2020/06/02/cc51376a-3683-4a56-8f69-947d51ef01d2/ENCFF944YQY.bam ENCODE4 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF226QBF fastq fastq reads ENCSR578HPA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:REST'], 'aliases': ['michael-snyder:TS-29'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5978/'], '@type': ['Target', 'Item'], 'label': 'REST', 'title': 'REST (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '059dda06-b6ba-41d7-bac9-970a237ce857', 'schema_version': '14', 'name': 'REST-human', '@id': '/targets/REST-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF114AFG/ 4986695554 Michael Snyder, Stanford c2baac3bdf1e3f5500f3fb6ca0d6f1ef https://www.encodeproject.org/files/ENCFF226QBF/@@download/ENCFF226QBF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/77bc950c-60f1-4a12-900c-06e6a881fc06/ENCFF226QBF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF114AFG fastq fastq reads ENCSR578HPA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:REST'], 'aliases': ['michael-snyder:TS-29'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5978/'], '@type': ['Target', 'Item'], 'label': 'REST', 'title': 'REST (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '059dda06-b6ba-41d7-bac9-970a237ce857', 'schema_version': '14', 'name': 'REST-human', '@id': '/targets/REST-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF226QBF/ 4585761414 Michael Snyder, Stanford 0abe808ef0d0921ca7cdd6ed6c0ab7ac https://www.encodeproject.org/files/ENCFF114AFG/@@download/ENCFF114AFG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/928f8ee8-33a4-4db5-a017-54b2361c977d/ENCFF114AFG.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF980OYM bam bam alignments GRCh38 ENCSR578HPA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:REST'], 'aliases': ['michael-snyder:TS-29'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5978/'], '@type': ['Target', 'Item'], 'label': 'REST', 'title': 'REST (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '059dda06-b6ba-41d7-bac9-970a237ce857', 'schema_version': '14', 'name': 'REST-human', '@id': '/targets/REST-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF114AFG/, /files/ENCFF226QBF/ 4724760190 ENCODE Processing Pipeline 4be63c00bc08f5e5c956b57b1e2dbada https://www.encodeproject.org/files/ENCFF980OYM/@@download/ENCFF980OYM.bam released s3://encode-public/2020/04/20/db1c64f0-7031-4c80-8a78-e9b009b94c42/ENCFF980OYM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF962RGH bam bam unfiltered alignments GRCh38 ENCSR578HPA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:REST'], 'aliases': ['michael-snyder:TS-29'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5978/'], '@type': ['Target', 'Item'], 'label': 'REST', 'title': 'REST (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '059dda06-b6ba-41d7-bac9-970a237ce857', 'schema_version': '14', 'name': 'REST-human', '@id': '/targets/REST-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF114AFG/, /files/ENCFF226QBF/ 8425446338 ENCODE Processing Pipeline f203515bef66491b656269f7bffd900d https://www.encodeproject.org/files/ENCFF962RGH/@@download/ENCFF962RGH.bam released s3://encode-public/2020/04/20/313314a4-1815-44ad-ab12-a030280c0e4e/ENCFF962RGH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF015QBJ fastq fastq reads ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF062WKC/ 1842947041 Richard Myers, HAIB 4f147a0f5d359eaaf39f55cba07445de SRA:SRR6214320 https://www.encodeproject.org/files/ENCFF015QBJ/@@download/ENCFF015QBJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/9abcdf4b-16ef-4b75-b478-b48653f4fa5a/ENCFF015QBJ.fastq.gz ENCFF062WKC fastq fastq reads ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF015QBJ/ 1930223419 Richard Myers, HAIB fc549f232f26f0cfdefa908924e46394 SRA:SRR6214320 https://www.encodeproject.org/files/ENCFF062WKC/@@download/ENCFF062WKC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/7facf92e-2ba1-44ab-998e-e696e97cf4f3/ENCFF062WKC.fastq.gz ENCFF971YQA bam bam unfiltered alignments hg19 ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF015QBJ/, /files/ENCFF062WKC/ 4618283885 ENCODE Processing Pipeline 4aebddab08bc751f4c547d1473f3ae98 https://www.encodeproject.org/files/ENCFF971YQA/@@download/ENCFF971YQA.bam released s3://encode-public/2017/02/02/eef1b9dd-ee44-4c1f-b4e1-09f7a0b0deb2/ENCFF971YQA.bam ENCODE3 hg19 archived ENCFF540ZXV bam bam alignments hg19 ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF015QBJ/, /files/ENCFF062WKC/ 3422229320 ENCODE Processing Pipeline 730bfc0ac5ba62b1c6fbe735c4dc9438 https://www.encodeproject.org/files/ENCFF540ZXV/@@download/ENCFF540ZXV.bam released s3://encode-public/2017/02/02/84a686ef-87f9-41fd-996a-4f0ac48f15e9/ENCFF540ZXV.bam ENCODE3 hg19 archived ENCFF524YZU bam bam unfiltered alignments GRCh38 ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF015QBJ/, /files/ENCFF062WKC/ 4641183274 ENCODE Processing Pipeline 5a847999a95e2920a7bc5f6262ea94b5 https://www.encodeproject.org/files/ENCFF524YZU/@@download/ENCFF524YZU.bam released s3://encode-public/2017/02/02/7f6abf53-802b-41d0-94e3-e2922ce7099c/ENCFF524YZU.bam ENCODE3 GRCh38 archived ENCFF727MPI bam bam alignments GRCh38 ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF015QBJ/, /files/ENCFF062WKC/ 3427315994 ENCODE Processing Pipeline 710defe0d4f57a5435d0fa78d26fd74c https://www.encodeproject.org/files/ENCFF727MPI/@@download/ENCFF727MPI.bam released s3://encode-public/2017/02/02/797db9e0-d4a2-414e-bf39-430cd43b113e/ENCFF727MPI.bam ENCODE3 GRCh38 archived ENCFF081VUA bam bam unfiltered alignments GRCh38 ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF062WKC/, /files/ENCFF015QBJ/ 4534217435 ENCODE Processing Pipeline 49466af3666c19dd0176034a87e1d3ca https://www.encodeproject.org/files/ENCFF081VUA/@@download/ENCFF081VUA.bam released s3://encode-public/2020/10/28/6509cf1a-01eb-46c9-8321-f65ca18c96f6/ENCFF081VUA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF929QTO bam bam alignments GRCh38 ENCSR774ONS Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF062WKC/, /files/ENCFF015QBJ/ 3242688186 ENCODE Processing Pipeline bc7c6c2e1f6c32429193a7efc03911af https://www.encodeproject.org/files/ENCFF929QTO/@@download/ENCFF929QTO.bam released s3://encode-public/2020/10/28/d6b03e87-c072-45db-987f-48b20e3b446d/ENCFF929QTO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF964KEZ fastq fastq reads ENCSR099ETQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF295HQI/ 2237048449 Michael Snyder, Stanford b430814594626df930e3bf7538a66734 https://www.encodeproject.org/files/ENCFF964KEZ/@@download/ENCFF964KEZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/06/22a71f20-38b0-4bab-a3c2-186ffcfef1f0/ENCFF964KEZ.fastq.gz ENCFF295HQI fastq fastq reads ENCSR099ETQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF964KEZ/ 2040242151 Michael Snyder, Stanford 029f631bdca0810950662196f2879a61 https://www.encodeproject.org/files/ENCFF295HQI/@@download/ENCFF295HQI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/06/480dffee-b872-4166-9286-48dc81673a26/ENCFF295HQI.fastq.gz ENCFF191DES bam bam unfiltered alignments GRCh38 ENCSR099ETQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF295HQI/, /files/ENCFF964KEZ/ 4298285558 ENCODE Processing Pipeline 75ca473d572721b4d3b972f8f56022c3 https://www.encodeproject.org/files/ENCFF191DES/@@download/ENCFF191DES.bam released s3://encode-public/2020/05/11/5d0c1a2e-12be-47a6-a832-5c54820b1b5d/ENCFF191DES.bam ENCODE4 v1.4.0 GRCh38 released ENCFF081HTK bam bam alignments GRCh38 ENCSR099ETQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZBTB11'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/27107/'], '@type': ['Target', 'Item'], 'label': 'ZBTB11', 'title': 'ZBTB11 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6b7c1f8-62d9-48fb-a633-b01a6c77ac69', 'schema_version': '14', 'name': 'ZBTB11-human', '@id': '/targets/ZBTB11-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF295HQI/, /files/ENCFF964KEZ/ 3589072101 ENCODE Processing Pipeline d30b96f729f12b83d00da2d3bcbd8964 https://www.encodeproject.org/files/ENCFF081HTK/@@download/ENCFF081HTK.bam released s3://encode-public/2020/05/11/f77456bf-439c-41f5-b428-439cee9d9530/ENCFF081HTK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF746FEB fastq fastq reads ENCSR025GHD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:JUNB'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3726/'], '@type': ['Target', 'Item'], 'label': 'JUNB', 'title': 'JUNB (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '3a9f7c17-42bb-4c12-a001-d18a327ea78d', 'schema_version': '14', 'name': 'JUNB-human', '@id': '/targets/JUNB-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF896XER/ 2495958638 Michael Snyder, Stanford ad2092d160e27cd752ff4d51cffd3e4a SRA:SRR14103287 https://www.encodeproject.org/files/ENCFF746FEB/@@download/ENCFF746FEB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/208328f3-dcf2-4a0a-b9ae-d76943f468ec/ENCFF746FEB.fastq.gz mild to moderate bottlenecking ENCFF896XER fastq fastq reads ENCSR025GHD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:JUNB'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3726/'], '@type': ['Target', 'Item'], 'label': 'JUNB', 'title': 'JUNB (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '3a9f7c17-42bb-4c12-a001-d18a327ea78d', 'schema_version': '14', 'name': 'JUNB-human', '@id': '/targets/JUNB-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF746FEB/ 2752541441 Michael Snyder, Stanford 39996293a84fa11b2416b827f2fd33aa SRA:SRR14103287 https://www.encodeproject.org/files/ENCFF896XER/@@download/ENCFF896XER.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/18/9453e6f7-aa66-47a8-a100-44a0c86e0c81/ENCFF896XER.fastq.gz mild to moderate bottlenecking ENCFF903PSK bam bam alignments GRCh38 ENCSR025GHD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:JUNB'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3726/'], '@type': ['Target', 'Item'], 'label': 'JUNB', 'title': 'JUNB (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '3a9f7c17-42bb-4c12-a001-d18a327ea78d', 'schema_version': '14', 'name': 'JUNB-human', '@id': '/targets/JUNB-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF746FEB/, /files/ENCFF896XER/ 3879579132 ENCODE Processing Pipeline 426f4034660c676b3d01f5b1ac736cee https://www.encodeproject.org/files/ENCFF903PSK/@@download/ENCFF903PSK.bam released s3://encode-public/2020/04/20/9016ce85-185e-4779-ad8e-83e376322f08/ENCFF903PSK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF997GOC bam bam unfiltered alignments GRCh38 ENCSR025GHD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:JUNB'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3726/'], '@type': ['Target', 'Item'], 'label': 'JUNB', 'title': 'JUNB (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '3a9f7c17-42bb-4c12-a001-d18a327ea78d', 'schema_version': '14', 'name': 'JUNB-human', '@id': '/targets/JUNB-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF746FEB/, /files/ENCFF896XER/ 5174367288 ENCODE Processing Pipeline 57f1ed82996d2a91798bae8ae403c988 https://www.encodeproject.org/files/ENCFF997GOC/@@download/ENCFF997GOC.bam released s3://encode-public/2020/04/20/4aeb3e03-ed9f-4716-a519-b89ce4a9d39f/ENCFF997GOC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF302WUB fastq fastq reads ENCSR257URH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF713KDI/ 1950944953 Michael Snyder, Stanford 428353bdada5af971d18a0340dac5bfb SRA:SRR14103680 https://www.encodeproject.org/files/ENCFF302WUB/@@download/ENCFF302WUB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7997bfcd-e859-4c4e-9526-b7b10b532a2c/ENCFF302WUB.fastq.gz ENCFF713KDI fastq fastq reads ENCSR257URH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF302WUB/ 2131820745 Michael Snyder, Stanford fff40d995ce33355b19bc6d3513ce59b SRA:SRR14103680 https://www.encodeproject.org/files/ENCFF713KDI/@@download/ENCFF713KDI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/bb5f08b3-aeed-4aa7-9c49-17cd65b9335a/ENCFF713KDI.fastq.gz ENCFF355WXV bam bam unfiltered alignments GRCh38 ENCSR257URH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF302WUB/, /files/ENCFF713KDI/ 4113666822 ENCODE Processing Pipeline da90b8861f9f9a5972878b0dfcf1c85b https://www.encodeproject.org/files/ENCFF355WXV/@@download/ENCFF355WXV.bam released s3://encode-public/2020/05/15/93e4dd04-e026-40f6-8ce7-5adb1c060a08/ENCFF355WXV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF116OIJ bam bam alignments GRCh38 ENCSR257URH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-889'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/117608/'], '@type': ['Target', 'Item'], 'name': 'ZNF354B-human', 'label': 'ZNF354B', '@id': '/targets/ZNF354B-human/', 'title': 'ZNF354B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '884a77b4-f554-49c3-9f34-d4fa90bdefd2', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF302WUB/, /files/ENCFF713KDI/ 3263682965 ENCODE Processing Pipeline d5824de5456ac6e52a9b6e55b1804da3 https://www.encodeproject.org/files/ENCFF116OIJ/@@download/ENCFF116OIJ.bam released s3://encode-public/2020/05/15/46a62a55-8c80-4dfd-9844-0d48c0695bde/ENCFF116OIJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF120UZS fastq fastq reads ENCSR331RGH Control ChIP-seq /fly-donors/ENCDO292TYE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42037/'], '@type': ['Target', 'Item'], 'name': 'abd-A-dmelanogaster', 'label': 'abd-A', '@id': '/targets/abd-A-dmelanogaster/', 'title': 'abd-A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f6cba925-5ebf-4a43-9dd6-06a0efed63c8', 'status': 'released'} dm3 3R 12567669 12670478 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 765180211 Kevin White, UChicago 21fe3e33eb92673429c4646a900e8c6c https://www.encodeproject.org/files/ENCFF120UZS/@@download/ENCFF120UZS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/16abda6f-f7b0-4254-87c2-33e143b61b8f/ENCFF120UZS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF846LJT bam bam alignments dm6 ENCSR331RGH Control ChIP-seq /fly-donors/ENCDO292TYE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42037/'], '@type': ['Target', 'Item'], 'name': 'abd-A-dmelanogaster', 'label': 'abd-A', '@id': '/targets/abd-A-dmelanogaster/', 'title': 'abd-A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f6cba925-5ebf-4a43-9dd6-06a0efed63c8', 'status': 'released'} dm3 3R 12567669 12670478 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF120UZS/, /files/ENCFF479RCH/ 1012659722 Kevin White, UChicago 3ab763eea0249fa8dda47c89d5292692 https://www.encodeproject.org/files/ENCFF846LJT/@@download/ENCFF846LJT.bam released s3://encode-public/2019/04/13/88a65196-d1a6-43c2-8829-72d0c2ed1bba/ENCFF846LJT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF456ICJ bigWig bigWig signal of unique reads dm6 ENCSR331RGH Control ChIP-seq /fly-donors/ENCDO292TYE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42037/'], '@type': ['Target', 'Item'], 'name': 'abd-A-dmelanogaster', 'label': 'abd-A', '@id': '/targets/abd-A-dmelanogaster/', 'title': 'abd-A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f6cba925-5ebf-4a43-9dd6-06a0efed63c8', 'status': 'released'} dm3 3R 12567669 12670478 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF846LJT/ 17559271 Kevin White, UChicago f42a27b2d8166511ec8d3525650803f8 https://www.encodeproject.org/files/ENCFF456ICJ/@@download/ENCFF456ICJ.bigWig released s3://encode-public/2019/04/16/74b681ad-12bd-49cd-8290-0f20392a8de6/ENCFF456ICJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF792UHX bigWig bigWig read-depth normalized signal dm6 ENCSR331RGH Control ChIP-seq /fly-donors/ENCDO292TYE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42037/'], '@type': ['Target', 'Item'], 'name': 'abd-A-dmelanogaster', 'label': 'abd-A', '@id': '/targets/abd-A-dmelanogaster/', 'title': 'abd-A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f6cba925-5ebf-4a43-9dd6-06a0efed63c8', 'status': 'released'} dm3 3R 12567669 12670478 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF846LJT/ 17571748 Kevin White, UChicago 8d5ce96d0fe985867b66923e48314689 https://www.encodeproject.org/files/ENCFF792UHX/@@download/ENCFF792UHX.bigWig released s3://encode-public/2019/04/16/bd3ab4f8-9f63-49fa-bd69-00960ef831ea/ENCFF792UHX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF432PXT fastq fastq reads ENCSR695PSG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1024'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80818/'], '@type': ['Target', 'Item'], 'name': 'ZNF436-human', 'label': 'ZNF436', '@id': '/targets/ZNF436-human/', 'title': 'ZNF436 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cbd2df94-2f19-4d4b-a2bb-edfeff5f46dc', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF217OPK/ 2156368962 Michael Snyder, Stanford 921839f2ba4dd3da2f07ca8eb38f03f6 https://www.encodeproject.org/files/ENCFF432PXT/@@download/ENCFF432PXT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/2afd0314-42e2-440b-99b1-dc84c5ad9333/ENCFF432PXT.fastq.gz ENCFF217OPK fastq fastq reads ENCSR695PSG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1024'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80818/'], '@type': ['Target', 'Item'], 'name': 'ZNF436-human', 'label': 'ZNF436', '@id': '/targets/ZNF436-human/', 'title': 'ZNF436 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cbd2df94-2f19-4d4b-a2bb-edfeff5f46dc', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF432PXT/ 2319136017 Michael Snyder, Stanford 5eac024ea39321d6b4adf35190f76a44 https://www.encodeproject.org/files/ENCFF217OPK/@@download/ENCFF217OPK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/f9b68762-92d9-4261-a020-e2e3da3c0bd1/ENCFF217OPK.fastq.gz ENCFF641AEZ bam bam unfiltered alignments GRCh38 ENCSR695PSG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1024'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80818/'], '@type': ['Target', 'Item'], 'name': 'ZNF436-human', 'label': 'ZNF436', '@id': '/targets/ZNF436-human/', 'title': 'ZNF436 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cbd2df94-2f19-4d4b-a2bb-edfeff5f46dc', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF432PXT/, /files/ENCFF217OPK/ 4596530766 ENCODE Processing Pipeline 150ddb7b4ec854512c2838ec9f365ac6 https://www.encodeproject.org/files/ENCFF641AEZ/@@download/ENCFF641AEZ.bam released s3://encode-public/2020/04/20/7ac0ad6d-8924-4bf9-8130-b9e0626cf615/ENCFF641AEZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF923WXH bam bam alignments GRCh38 ENCSR695PSG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1024'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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/files/ENCFF488PAK/ 888748615 ENCODE Processing Pipeline a02be92bdcf794fbc0016eb05b2cb822 https://www.encodeproject.org/files/ENCFF968PBK/@@download/ENCFF968PBK.bam released s3://encode-public/2020/09/29/3b59c244-28d5-449e-982d-918b4c4156a2/ENCFF968PBK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF488PAK fastq fastq reads ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 774941938 Tim Reddy, Duke 2a127ce803d7604a23e01e59eedf5c83 SRA:SRR5129656 https://www.encodeproject.org/files/ENCFF488PAK/@@download/ENCFF488PAK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/9eb7e81c-6b0c-4d16-9006-2e980847324f/ENCFF488PAK.fastq.gz ENCFF943LBG fastq fastq reads ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 843650431 Tim Reddy, Duke 3348e034deab08bec531c053422131e3 SRA:SRR5129654 https://www.encodeproject.org/files/ENCFF943LBG/@@download/ENCFF943LBG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/082d27b0-92d6-40d9-8e8f-0df553859b92/ENCFF943LBG.fastq.gz ENCFF299KOY fastq fastq reads ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 704312037 Tim Reddy, Duke 87302fb9ce6b305d810ab8dea59c2331 SRA:SRR5129655 https://www.encodeproject.org/files/ENCFF299KOY/@@download/ENCFF299KOY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/fe29b753-72d3-4848-8b10-160ed8ea18bd/ENCFF299KOY.fastq.gz ENCFF018IPS bam bam alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF488PAK/ 849985408 Tim Reddy, Duke 1213c7a9df524ed02fd1212dcc166616 https://www.encodeproject.org/files/ENCFF018IPS/@@download/ENCFF018IPS.bam released s3://encode-public/2016/12/15/746a1f6f-895a-43ae-90e2-e929b1c35b20/ENCFF018IPS.bam Lab custom GRCh38 archived ENCFF782EQG bam bam alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF299KOY/ 712334251 Tim Reddy, Duke 8c2c5fe62a75022aa70f15a4ac1008f3 https://www.encodeproject.org/files/ENCFF782EQG/@@download/ENCFF782EQG.bam released s3://encode-public/2016/12/15/c1dc7191-f37c-4de9-8e27-b837a84d0544/ENCFF782EQG.bam Lab custom GRCh38 archived ENCFF279HUL bam bam alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF943LBG/ 926770057 Tim Reddy, Duke ae3b9e6f52c694e90bbfed7f40cc3d95 https://www.encodeproject.org/files/ENCFF279HUL/@@download/ENCFF279HUL.bam released s3://encode-public/2016/12/15/2cb5bc5b-2450-4517-8d64-d9ec999da69d/ENCFF279HUL.bam Lab custom GRCh38 archived ENCFF468MTM bam bam unfiltered alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF488PAK/ 1051365913 ENCODE Processing Pipeline 17a8b31a7023fd45231808ee360c4783 https://www.encodeproject.org/files/ENCFF468MTM/@@download/ENCFF468MTM.bam released s3://encode-public/2020/09/29/2482d4d7-0774-49ea-ad93-14b5c05dcde6/ENCFF468MTM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF628PKO bam bam unfiltered alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF943LBG/ 1146450755 ENCODE Processing Pipeline 2c60ad4ff5ba5fcd2f6fc578056eb94c https://www.encodeproject.org/files/ENCFF628PKO/@@download/ENCFF628PKO.bam released s3://encode-public/2020/09/29/1a6a2bd9-cbdb-4259-afbc-6594ba78caef/ENCFF628PKO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF383VPP bam bam alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF299KOY/ 751442268 ENCODE Processing Pipeline 12bf447651c2f7a0cbb04211240fe8fe https://www.encodeproject.org/files/ENCFF383VPP/@@download/ENCFF383VPP.bam released s3://encode-public/2020/09/29/e7baa592-9ca0-4ab7-9029-f92cdd1b4889/ENCFF383VPP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF102PID bam bam alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF110MCL/, /files/ENCFF943LBG/ 976670662 ENCODE Processing Pipeline 2af111457480fae39321dd7356d7ca98 https://www.encodeproject.org/files/ENCFF102PID/@@download/ENCFF102PID.bam released s3://encode-public/2020/09/29/892b0f0d-5a57-4f5e-a550-aef82a41b413/ENCFF102PID.bam ENCODE4 v1.5.1 GRCh38 released ENCFF507IVQ bam bam unfiltered alignments GRCh38 ENCSR701MJQ Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 7 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF299KOY/ 910449537 ENCODE Processing Pipeline 84fa1dc9934e5de3a7836a032c8cdd3d https://www.encodeproject.org/files/ENCFF507IVQ/@@download/ENCFF507IVQ.bam released s3://encode-public/2020/09/29/36b518ff-49d0-4c6c-ab3a-69fcfc18755d/ENCFF507IVQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF020JHI fastq fastq reads ENCSR125OAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1662'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7024/'], '@type': ['Target', 'Item'], 'name': 'TFCP2-human', 'label': 'TFCP2', '@id': '/targets/TFCP2-human/', 'title': 'TFCP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a621a3d0-f42c-4d5a-abd9-5245d8c670a7', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF719CCQ/ 1900552868 Michael Snyder, Stanford d6de35c5dc0174c36bb048b0cd9b35c1 https://www.encodeproject.org/files/ENCFF020JHI/@@download/ENCFF020JHI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/5e12e700-fb1b-4da4-856c-fa8029dcd445/ENCFF020JHI.fastq.gz ENCFF719CCQ fastq fastq reads ENCSR125OAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1662'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7024/'], '@type': ['Target', 'Item'], 'name': 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'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7024/'], '@type': ['Target', 'Item'], 'name': 'TFCP2-human', 'label': 'TFCP2', '@id': '/targets/TFCP2-human/', 'title': 'TFCP2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a621a3d0-f42c-4d5a-abd9-5245d8c670a7', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF020JHI/, /files/ENCFF719CCQ/ 4109844558 ENCODE Processing Pipeline 74f0bf4980825b60a3a7cd80431e5d90 https://www.encodeproject.org/files/ENCFF469TAA/@@download/ENCFF469TAA.bam released s3://encode-public/2020/04/20/96c4baff-14c4-44a4-a559-18618b51fc16/ENCFF469TAA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF383VKC fastq fastq reads ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF793LZO/ 7172107092 Richard Myers, HAIB 0b3f1393effd01293ea20520438eedb4 SRA:SRR6213600 https://www.encodeproject.org/files/ENCFF383VKC/@@download/ENCFF383VKC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/a739335b-f2f1-4344-86fc-67efc52d6e5a/ENCFF383VKC.fastq.gz ENCFF793LZO fastq fastq reads ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF383VKC/ 7388079225 Richard Myers, HAIB bbbe261113068d776af97ce222419fb9 SRA:SRR6213600 https://www.encodeproject.org/files/ENCFF793LZO/@@download/ENCFF793LZO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/1a06d7bb-fc9f-434f-8938-5d8091d473b8/ENCFF793LZO.fastq.gz ENCFF284RKQ bam bam unfiltered alignments hg19 ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF793LZO/, /files/ENCFF383VKC/ 16183227644 ENCODE Processing Pipeline 959d0e116ba42298c95d4580da4de36e https://www.encodeproject.org/files/ENCFF284RKQ/@@download/ENCFF284RKQ.bam released s3://encode-public/2017/02/02/cc515dfe-1232-417d-9020-ade6ea7f1bdd/ENCFF284RKQ.bam ENCODE3 hg19 archived ENCFF325HHC bam bam alignments hg19 ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF793LZO/, /files/ENCFF383VKC/ 9601257583 ENCODE Processing Pipeline 8272b53f2a63bb150e36e12353356a2c https://www.encodeproject.org/files/ENCFF325HHC/@@download/ENCFF325HHC.bam released s3://encode-public/2017/02/02/a77285cf-7260-44a6-90ad-aff832cf6223/ENCFF325HHC.bam ENCODE3 hg19 archived ENCFF727FYV bam bam unfiltered alignments GRCh38 ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF793LZO/, /files/ENCFF383VKC/ 16243265888 ENCODE Processing Pipeline b419d5281d8f74f6a3b4d396da5a2582 https://www.encodeproject.org/files/ENCFF727FYV/@@download/ENCFF727FYV.bam released s3://encode-public/2017/02/02/7420d2b5-1a32-4692-922a-1fd72897a8c2/ENCFF727FYV.bam ENCODE3 GRCh38 archived ENCFF973AOU bam bam alignments GRCh38 ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF793LZO/, /files/ENCFF383VKC/ 9618271024 ENCODE Processing Pipeline 395699f937b43e28dc19f328421b631d https://www.encodeproject.org/files/ENCFF973AOU/@@download/ENCFF973AOU.bam released s3://encode-public/2017/02/02/34ba766a-de9e-4513-81b7-ee28275e9362/ENCFF973AOU.bam ENCODE3 GRCh38 archived ENCFF752TSP bam bam unfiltered alignments GRCh38 ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF383VKC/, /files/ENCFF793LZO/ 16687038066 ENCODE Processing Pipeline 310ddfaa547050bc60f1390a958f8f63 https://www.encodeproject.org/files/ENCFF752TSP/@@download/ENCFF752TSP.bam released s3://encode-public/2020/06/06/fabb82f2-c443-4ce5-898d-e4c0ea89fc05/ENCFF752TSP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF624FKS bam bam alignments GRCh38 ENCSR393DQE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF383VKC/, /files/ENCFF793LZO/ 9041719890 ENCODE Processing Pipeline 2b17b27bb0774067c6d88c612b2e9680 https://www.encodeproject.org/files/ENCFF624FKS/@@download/ENCFF624FKS.bam released s3://encode-public/2020/06/06/efb5f1c3-f8fc-43dd-a465-19023892318a/ENCFF624FKS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF662IBJ fastq fastq reads ENCSR899URK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-896'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/113835/'], '@type': ['Target', 'Item'], 'name': 'ZNF257-human', 'label': 'ZNF257', '@id': '/targets/ZNF257-human/', 'title': 'ZNF257 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '825376ef-b2b4-4a04-8669-9f1c2f2bd99c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF498EPN/ 2428823597 Michael Snyder, Stanford 9aae219d551bc3bca3bc379df258a0b9 SRA:SRR14105644 https://www.encodeproject.org/files/ENCFF662IBJ/@@download/ENCFF662IBJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/22d170e2-7f1a-4ed4-beac-00a550579c08/ENCFF662IBJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF498EPN fastq fastq reads ENCSR899URK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-896'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/113835/'], '@type': ['Target', 'Item'], 'name': 'ZNF257-human', 'label': 'ZNF257', '@id': '/targets/ZNF257-human/', 'title': 'ZNF257 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '825376ef-b2b4-4a04-8669-9f1c2f2bd99c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF662IBJ/ 2685285470 Michael Snyder, Stanford d489e132fee15d56d3547301dfbf9a2a SRA:SRR14105644 https://www.encodeproject.org/files/ENCFF498EPN/@@download/ENCFF498EPN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7c4770ff-5943-42d2-9b43-32229b0046e5/ENCFF498EPN.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF600FCQ bam bam alignments GRCh38 ENCSR899URK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-896'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/113835/'], '@type': ['Target', 'Item'], 'name': 'ZNF257-human', 'label': 'ZNF257', '@id': '/targets/ZNF257-human/', 'title': 'ZNF257 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '825376ef-b2b4-4a04-8669-9f1c2f2bd99c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF662IBJ/, /files/ENCFF498EPN/ 2757900836 ENCODE Processing Pipeline 83a45fd96b7b35852352197cf43ff73e https://www.encodeproject.org/files/ENCFF600FCQ/@@download/ENCFF600FCQ.bam released s3://encode-public/2020/05/15/6264ccf5-48c9-4050-b431-4484155a2696/ENCFF600FCQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF892SXQ bam bam unfiltered alignments GRCh38 ENCSR899URK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-896'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/113835/'], '@type': ['Target', 'Item'], 'name': 'ZNF257-human', 'label': 'ZNF257', '@id': '/targets/ZNF257-human/', 'title': 'ZNF257 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '825376ef-b2b4-4a04-8669-9f1c2f2bd99c', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF662IBJ/, /files/ENCFF498EPN/ 4410208473 ENCODE Processing Pipeline 84c0e0b16b6d0491cc335f20d44f2e89 https://www.encodeproject.org/files/ENCFF892SXQ/@@download/ENCFF892SXQ.bam released s3://encode-public/2020/05/15/a345e03e-1114-43ff-b6ad-d27129090d2c/ENCFF892SXQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF036FBG fastq fastq reads ENCSR248LOQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51742/'], '@type': ['Target', 'Item'], 'name': 'ARID4B-human', 'label': 'ARID4B', '@id': '/targets/ARID4B-human/', 'title': 'ARID4B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afe64f25-e1eb-4294-a935-d8cc434e6584', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF863MPE/ 2344036737 Michael Snyder, Stanford 186b8ceb1831b06a7239b45cc238249f SRA:SRR14103540 https://www.encodeproject.org/files/ENCFF036FBG/@@download/ENCFF036FBG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/79e07ec0-dfae-4338-8e5f-a7eaea7df965/ENCFF036FBG.fastq.gz ENCFF863MPE fastq fastq reads ENCSR248LOQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51742/'], '@type': ['Target', 'Item'], 'name': 'ARID4B-human', 'label': 'ARID4B', '@id': '/targets/ARID4B-human/', 'title': 'ARID4B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afe64f25-e1eb-4294-a935-d8cc434e6584', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF036FBG/ 2648692054 Michael Snyder, Stanford 7c8de90b9d01976fca93503f97dafffa SRA:SRR14103540 https://www.encodeproject.org/files/ENCFF863MPE/@@download/ENCFF863MPE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/3e64f61e-96cd-4756-a189-829b91e31646/ENCFF863MPE.fastq.gz ENCFF493NWW bam bam unfiltered alignments GRCh38 ENCSR248LOQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51742/'], '@type': ['Target', 'Item'], 'name': 'ARID4B-human', 'label': 'ARID4B', '@id': '/targets/ARID4B-human/', 'title': 'ARID4B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afe64f25-e1eb-4294-a935-d8cc434e6584', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF036FBG/, /files/ENCFF863MPE/ 4860969431 ENCODE Processing Pipeline faa5ff6c6598a980bd9c7c291033c5e6 https://www.encodeproject.org/files/ENCFF493NWW/@@download/ENCFF493NWW.bam released s3://encode-public/2020/04/20/78665b6b-6251-49fa-b09f-ded9945e6f2c/ENCFF493NWW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF076HSI bam bam alignments GRCh38 ENCSR248LOQ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/51742/'], '@type': ['Target', 'Item'], 'name': 'ARID4B-human', 'label': 'ARID4B', '@id': '/targets/ARID4B-human/', 'title': 'ARID4B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'afe64f25-e1eb-4294-a935-d8cc434e6584', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF036FBG/, /files/ENCFF863MPE/ 3968047154 ENCODE Processing Pipeline 1b57f4d09a8a130ff2b8a8de27ab4194 https://www.encodeproject.org/files/ENCFF076HSI/@@download/ENCFF076HSI.bam released s3://encode-public/2020/04/20/74c3e4ec-759c-4161-aee3-3da045cc5004/ENCFF076HSI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF323HKT fastq fastq reads ENCSR493HMV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CLOCK'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9575/'], '@type': ['Target', 'Item'], 'label': 'CLOCK', 'title': 'CLOCK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '028252ae-8969-49a0-a5d1-d06c4ea899f9', 'schema_version': '14', 'name': 'CLOCK-human', '@id': '/targets/CLOCK-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF851UYB/ 2353898837 Michael Snyder, Stanford c835c89b057184f7cb9f62a6cc2919d8 https://www.encodeproject.org/files/ENCFF323HKT/@@download/ENCFF323HKT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/97c7ffb0-1d78-4956-bdcc-a3a55d4c6d01/ENCFF323HKT.fastq.gz mild to moderate bottlenecking ENCFF851UYB fastq fastq reads ENCSR493HMV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CLOCK'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9575/'], '@type': ['Target', 'Item'], 'label': 'CLOCK', 'title': 'CLOCK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '028252ae-8969-49a0-a5d1-d06c4ea899f9', 'schema_version': '14', 'name': 'CLOCK-human', '@id': '/targets/CLOCK-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF323HKT/ 2778093277 Michael Snyder, Stanford 9dbece6f12ba35bfd3189fa620b252a2 https://www.encodeproject.org/files/ENCFF851UYB/@@download/ENCFF851UYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/cfba52f7-aad1-4463-8a42-38f6597fffb5/ENCFF851UYB.fastq.gz mild to moderate bottlenecking ENCFF741UXZ bam bam unfiltered alignments GRCh38 ENCSR493HMV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CLOCK'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9575/'], '@type': ['Target', 'Item'], 'label': 'CLOCK', 'title': 'CLOCK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '028252ae-8969-49a0-a5d1-d06c4ea899f9', 'schema_version': '14', 'name': 'CLOCK-human', '@id': '/targets/CLOCK-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF323HKT/, /files/ENCFF851UYB/ 4904264124 ENCODE Processing Pipeline d9f8290dd170c6c645985b789613e884 https://www.encodeproject.org/files/ENCFF741UXZ/@@download/ENCFF741UXZ.bam released s3://encode-public/2020/04/20/4fd98bf9-4074-41f8-8bf5-dee0182a8a06/ENCFF741UXZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF403EDN bam bam alignments GRCh38 ENCSR493HMV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:CLOCK'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9575/'], '@type': ['Target', 'Item'], 'label': 'CLOCK', 'title': 'CLOCK (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '028252ae-8969-49a0-a5d1-d06c4ea899f9', 'schema_version': '14', 'name': 'CLOCK-human', '@id': '/targets/CLOCK-human/', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF323HKT/, /files/ENCFF851UYB/ 3649883915 ENCODE Processing Pipeline d1a4ffd4162fb2aaa666aa7fb613fc93 https://www.encodeproject.org/files/ENCFF403EDN/@@download/ENCFF403EDN.bam released s3://encode-public/2020/04/20/a0a04c4a-b4a3-4f53-817c-34dbcf624278/ENCFF403EDN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF142TXG fastq fastq reads ENCSR675PWC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/162239/'], '@type': ['Target', 'Item'], 'name': 'ZFP1-human', 'label': 'ZFP1', '@id': '/targets/ZFP1-human/', 'title': 'ZFP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d03a9a5-0ee2-4c22-b409-37d6af823854', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 paired-ended 1 /files/ENCFF394NIH/ 3061533806 Michael Snyder, Stanford fe133a45635a425d4b27d419220b2f0c https://www.encodeproject.org/files/ENCFF142TXG/@@download/ENCFF142TXG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/ba51ee6f-4610-4b23-a43d-090a31022266/ENCFF142TXG.fastq.gz mild to moderate bottlenecking, low read depth ENCFF394NIH fastq fastq reads ENCSR675PWC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/162239/'], '@type': ['Target', 'Item'], 'name': 'ZFP1-human', 'label': 'ZFP1', '@id': '/targets/ZFP1-human/', 'title': 'ZFP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d03a9a5-0ee2-4c22-b409-37d6af823854', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 paired-ended 2 /files/ENCFF142TXG/ 3573108837 Michael Snyder, Stanford 4d0cb420c2f7a3c62dad96dd1b0ef1e3 https://www.encodeproject.org/files/ENCFF394NIH/@@download/ENCFF394NIH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/e2d0a82b-8411-4fef-8c46-906b4fd7713b/ENCFF394NIH.fastq.gz mild to moderate bottlenecking, low read depth ENCFF468WHW bam bam alignments GRCh38 ENCSR675PWC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/162239/'], '@type': ['Target', 'Item'], 'name': 'ZFP1-human', 'label': 'ZFP1', '@id': '/targets/ZFP1-human/', 'title': 'ZFP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d03a9a5-0ee2-4c22-b409-37d6af823854', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 /files/ENCFF110MCL/, /files/ENCFF142TXG/, /files/ENCFF394NIH/ 3348148934 ENCODE Processing Pipeline cab28348f90a25a1fd3e2237c5d061ba https://www.encodeproject.org/files/ENCFF468WHW/@@download/ENCFF468WHW.bam released s3://encode-public/2020/04/20/313a36c4-cb44-46d2-83d2-1649e39649a9/ENCFF468WHW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF197YVV bam bam unfiltered alignments GRCh38 ENCSR675PWC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/162239/'], '@type': ['Target', 'Item'], 'name': 'ZFP1-human', 'label': 'ZFP1', '@id': '/targets/ZFP1-human/', 'title': 'ZFP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '5d03a9a5-0ee2-4c22-b409-37d6af823854', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 /files/ENCFF110MCL/, /files/ENCFF142TXG/, /files/ENCFF394NIH/ 6154765575 ENCODE Processing Pipeline 42160ea0a1a1aa4342efe5c1c0a43e78 https://www.encodeproject.org/files/ENCFF197YVV/@@download/ENCFF197YVV.bam released s3://encode-public/2020/04/20/41d04228-a31e-4675-a95e-1ee649439d64/ENCFF197YVV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF315QZF fastq fastq reads ENCSR251EHJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6239/'], '@type': ['Target', 'Item'], 'name': 'RREB1-human', 'label': 'RREB1', '@id': '/targets/RREB1-human/', 'title': 'RREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1c43d0ef-d0dd-4d82-9dab-1dd4465745a3', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF561EJF/ 2721965209 Michael Snyder, Stanford 2f33128ac445068962fc932a324439f8 SRA:SRR14103617 https://www.encodeproject.org/files/ENCFF315QZF/@@download/ENCFF315QZF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/000ccadf-f968-48b7-9e4a-bfe33aa149bf/ENCFF315QZF.fastq.gz ENCFF561EJF fastq fastq reads ENCSR251EHJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6239/'], '@type': ['Target', 'Item'], 'name': 'RREB1-human', 'label': 'RREB1', '@id': '/targets/RREB1-human/', 'title': 'RREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1c43d0ef-d0dd-4d82-9dab-1dd4465745a3', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF315QZF/ 2460983054 Michael Snyder, Stanford c36119949dc1fda4f158d3b07a68fc6f SRA:SRR14103617 https://www.encodeproject.org/files/ENCFF561EJF/@@download/ENCFF561EJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/d32b66cf-afeb-4049-b02e-dc192a88f04d/ENCFF561EJF.fastq.gz ENCFF358TNU bam bam unfiltered alignments GRCh38 ENCSR251EHJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6239/'], '@type': ['Target', 'Item'], 'name': 'RREB1-human', 'label': 'RREB1', '@id': '/targets/RREB1-human/', 'title': 'RREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1c43d0ef-d0dd-4d82-9dab-1dd4465745a3', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF561EJF/, /files/ENCFF315QZF/ 5015533435 ENCODE Processing Pipeline 4ccd6890f373e9548b19bb100ae6af49 https://www.encodeproject.org/files/ENCFF358TNU/@@download/ENCFF358TNU.bam released s3://encode-public/2020/05/15/82272ae8-e2c1-473c-9a7d-55e961fe6844/ENCFF358TNU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF713EKU bam bam alignments GRCh38 ENCSR251EHJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6239/'], '@type': ['Target', 'Item'], 'name': 'RREB1-human', 'label': 'RREB1', '@id': '/targets/RREB1-human/', 'title': 'RREB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1c43d0ef-d0dd-4d82-9dab-1dd4465745a3', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF561EJF/, /files/ENCFF315QZF/ 4100707440 ENCODE Processing Pipeline 669c8d3ae4ced614a2ba14d8a6098d0e https://www.encodeproject.org/files/ENCFF713EKU/@@download/ENCFF713EKU.bam released s3://encode-public/2020/05/15/5d463014-3a07-4c80-9882-5d50731d5887/ENCFF713EKU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF098PIC bam bam unfiltered alignments hg19 ENCSR765SXU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1197'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55810/'], '@type': ['Target', 'Item'], 'name': 'FOXJ2-human', 'label': 'FOXJ2', '@id': '/targets/FOXJ2-human/', 'title': 'FOXJ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d3fa298-c217-4380-98d7-34cfd3b4b3ce', 'status': 'released'} hg19 12 7996213 8229486 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF890NEW/, /files/ENCFF807MUK/ 613079864 ENCODE Processing Pipeline ee41e6f1fd8ce1b2943a5b8337f1d7c8 https://www.encodeproject.org/files/ENCFF098PIC/@@download/ENCFF098PIC.bam released s3://encode-public/2018/02/22/61a3eba7-08d4-44fc-a17d-84978769378d/ENCFF098PIC.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF890NEW fastq fastq reads ENCSR765SXU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1197'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55810/'], '@type': ['Target', 'Item'], 'name': 'FOXJ2-human', 'label': 'FOXJ2', '@id': '/targets/FOXJ2-human/', 'title': 'FOXJ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d3fa298-c217-4380-98d7-34cfd3b4b3ce', 'status': 'released'} hg19 12 7996213 8229486 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 554047503 Kevin White, UChicago 8a1d17e516bf4cc11fd855ca2972158f SRA:SRR6214310 https://www.encodeproject.org/files/ENCFF890NEW/@@download/ENCFF890NEW.fastq.gz Illumina HiSeq 2000 /files/ENCFF656LJN/ released s3://encode-public/2016/04/01/35ef3758-18f5-453a-b3ec-c7ce1dc2d3fe/ENCFF890NEW.fastq.gz missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF064YUE bam bam alignments hg19 ENCSR765SXU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1197'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55810/'], '@type': ['Target', 'Item'], 'name': 'FOXJ2-human', 'label': 'FOXJ2', '@id': '/targets/FOXJ2-human/', 'title': 'FOXJ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d3fa298-c217-4380-98d7-34cfd3b4b3ce', 'status': 'released'} hg19 12 7996213 8229486 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF890NEW/, /files/ENCFF807MUK/ 476581711 ENCODE Processing Pipeline dd7b19e777206c8c1482b4b4ad454507 https://www.encodeproject.org/files/ENCFF064YUE/@@download/ENCFF064YUE.bam released s3://encode-public/2016/04/23/fe6a5ceb-a12c-4fa2-a57f-52eede4683ad/ENCFF064YUE.bam ENCODE3 hg19 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF178URB bam bam unfiltered alignments GRCh38 ENCSR765SXU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1197'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55810/'], '@type': ['Target', 'Item'], 'name': 'FOXJ2-human', 'label': 'FOXJ2', '@id': '/targets/FOXJ2-human/', 'title': 'FOXJ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d3fa298-c217-4380-98d7-34cfd3b4b3ce', 'status': 'released'} hg19 12 7996213 8229486 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF890NEW/, /files/ENCFF643CGH/ 615437565 ENCODE Processing Pipeline 1637e4163128ceae1d036923fea483fb https://www.encodeproject.org/files/ENCFF178URB/@@download/ENCFF178URB.bam released s3://encode-public/2016/05/06/c7adf716-9e35-4e0d-bc78-a267129d3d20/ENCFF178URB.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF358ZBU bam bam alignments GRCh38 ENCSR765SXU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1197'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55810/'], '@type': ['Target', 'Item'], 'name': 'FOXJ2-human', 'label': 'FOXJ2', '@id': '/targets/FOXJ2-human/', 'title': 'FOXJ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d3fa298-c217-4380-98d7-34cfd3b4b3ce', 'status': 'released'} hg19 12 7996213 8229486 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF890NEW/, /files/ENCFF643CGH/ 476271034 ENCODE Processing Pipeline 53270a937a01c7d3a8dabefec8a1824a https://www.encodeproject.org/files/ENCFF358ZBU/@@download/ENCFF358ZBU.bam released s3://encode-public/2016/05/06/00219ced-19f5-49c1-93d7-9382cdb7df61/ENCFF358ZBU.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF607LRB bam bam unfiltered alignments GRCh38 ENCSR765SXU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1197'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55810/'], '@type': ['Target', 'Item'], 'name': 'FOXJ2-human', 'label': 'FOXJ2', '@id': '/targets/FOXJ2-human/', 'title': 'FOXJ2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d3fa298-c217-4380-98d7-34cfd3b4b3ce', 'status': 'released'} hg19 12 7996213 8229486 DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF890NEW/, /files/ENCFF110MCL/ 614205732 ENCODE Processing Pipeline 07634690ef9fbb249ba0028a661ddb4e https://www.encodeproject.org/files/ENCFF607LRB/@@download/ENCFF607LRB.bam released s3://encode-public/2020/10/27/3e4a741f-4178-4db6-93a6-7350c09ab1d5/ENCFF607LRB.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, low read depth, missing genetic modification characterization ENCFF055NFM bam bam alignments GRCh38 ENCSR765SXU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1197'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF751BIN/ 2820606498 Michael Snyder, Stanford 6005fdedaf55eee9315d67d00a472cea SRA:SRR6213511 https://www.encodeproject.org/files/ENCFF463LCW/@@download/ENCFF463LCW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/e79cef70-deb5-4f80-9235-31c36caf19e2/ENCFF463LCW.fastq.gz mild to moderate bottlenecking ENCFF751BIN fastq fastq reads ENCSR372QOY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF463LCW/ 3221131919 Michael Snyder, Stanford 7f57627b0968298c4ca4b45d503f5730 SRA:SRR6213511 https://www.encodeproject.org/files/ENCFF751BIN/@@download/ENCFF751BIN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/0a1c5073-6969-4278-827c-248647e1769e/ENCFF751BIN.fastq.gz mild to moderate bottlenecking ENCFF698EWN bam bam unfiltered alignments GRCh38 ENCSR372QOY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF463LCW/, /files/ENCFF751BIN/ 5846326512 ENCODE Processing Pipeline 3e7e1d5421f48af59ca21a52b5a7f9f1 https://www.encodeproject.org/files/ENCFF698EWN/@@download/ENCFF698EWN.bam released s3://encode-public/2017/03/17/c315c244-1b3e-4882-b809-54d2964edd5b/ENCFF698EWN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF852SQW bam bam unfiltered alignments hg19 ENCSR372QOY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF463LCW/, /files/ENCFF751BIN/ 5840179782 ENCODE Processing Pipeline af90de487f2a1d9413893d9d97ce02b9 https://www.encodeproject.org/files/ENCFF852SQW/@@download/ENCFF852SQW.bam released s3://encode-public/2017/03/17/f5d39324-02da-4fdc-b71e-f82ab35fd25e/ENCFF852SQW.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF136UBM bam bam alignments hg19 ENCSR372QOY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF463LCW/, /files/ENCFF751BIN/ 4509585492 ENCODE Processing Pipeline 4855e8966c5d77a7216f739093fa1b69 https://www.encodeproject.org/files/ENCFF136UBM/@@download/ENCFF136UBM.bam released s3://encode-public/2017/03/17/6d1f073e-b94f-4d21-99de-1744c8610049/ENCFF136UBM.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF492TNL bam bam alignments GRCh38 ENCSR372QOY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF463LCW/, /files/ENCFF751BIN/ 4517392757 ENCODE Processing Pipeline 060c32015766481c22a4e885d156b591 https://www.encodeproject.org/files/ENCFF492TNL/@@download/ENCFF492TNL.bam released s3://encode-public/2017/03/17/2a88f80d-698d-44c8-9c43-2f032d709a23/ENCFF492TNL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF789XAT bam bam unfiltered alignments GRCh38 ENCSR372QOY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF463LCW/, /files/ENCFF751BIN/ 5841141394 ENCODE Processing Pipeline d8404dfd6c6ae06e153e1693a6bb1f30 https://www.encodeproject.org/files/ENCFF789XAT/@@download/ENCFF789XAT.bam released s3://encode-public/2020/06/03/62db0b60-13b6-472e-8bab-2457c16de116/ENCFF789XAT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF916XQX bam bam alignments GRCh38 ENCSR372QOY Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF463LCW/, /files/ENCFF751BIN/ 4414268786 ENCODE Processing Pipeline 065801db3366c6f7418c868837c0f809 https://www.encodeproject.org/files/ENCFF916XQX/@@download/ENCFF916XQX.bam released s3://encode-public/2020/06/03/eeaf312d-afff-4150-a4db-b5ddcaebb757/ENCFF916XQX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF433ZZU bam bam unfiltered alignments GRCh38 ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF229XSI/, /files/ENCFF110MCL/, /files/ENCFF805XXX/, /files/ENCFF431WSO/, /files/ENCFF620GLC/ 3802836427 ENCODE Processing Pipeline 00d24a7b67f0f7c05dda0209c771b562 https://www.encodeproject.org/files/ENCFF433ZZU/@@download/ENCFF433ZZU.bam released s3://encode-public/2020/09/20/dc39bf2b-d32c-4238-920b-625722d66acf/ENCFF433ZZU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF620GLC fastq fastq reads ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 1007528992 Bradley Bernstein, Broad ef6fb461ef6345b780f76a79a2dd7555 SRA:SRR10837421 https://www.encodeproject.org/files/ENCFF620GLC/@@download/ENCFF620GLC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/7f907c6d-a801-442e-84b8-f5cec813ed65/ENCFF620GLC.fastq.gz ENCFF431WSO fastq fastq reads ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_2 76 single-ended 984797433 Bradley Bernstein, Broad 66da3a177d7709da9a5fb9563dad35d9 SRA:SRR10837422 https://www.encodeproject.org/files/ENCFF431WSO/@@download/ENCFF431WSO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/8f11d559-0baf-492b-a5f0-e98d73c8b8c4/ENCFF431WSO.fastq.gz ENCFF805XXX fastq fastq reads ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1019876452 Bradley Bernstein, Broad f9a474109d3c471fe6170644bd1be734 SRA:SRR10837419 https://www.encodeproject.org/files/ENCFF805XXX/@@download/ENCFF805XXX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/35c3aa3e-7ec8-4787-a17f-6ad644b05e3d/ENCFF805XXX.fastq.gz ENCFF229XSI fastq fastq reads ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1 76 single-ended 1001426088 Bradley Bernstein, Broad 099c225f52ea4ddfbee1e7d07ff57d11 SRA:SRR10837420 https://www.encodeproject.org/files/ENCFF229XSI/@@download/ENCFF229XSI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/85300ba9-0623-4804-981f-cadc949f4847/ENCFF229XSI.fastq.gz ENCFF205GWT bam bam unfiltered alignments GRCh38 ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF805XXX/, /files/ENCFF643CGH/, /files/ENCFF229XSI/, /files/ENCFF431WSO/, /files/ENCFF620GLC/ 3761534447 ENCODE Processing Pipeline 48498a8cbc56d20151bce30d48b991d9 https://www.encodeproject.org/files/ENCFF205GWT/@@download/ENCFF205GWT.bam released s3://encode-public/2018/11/27/1b7cad31-8773-4f22-9c4b-30f838ad2847/ENCFF205GWT.bam ENCODE3 GRCh38 archived ENCFF782HSW bam bam alignments GRCh38 ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF805XXX/, /files/ENCFF643CGH/, /files/ENCFF229XSI/, /files/ENCFF431WSO/, /files/ENCFF620GLC/ 3089550797 ENCODE Processing Pipeline b5af1a5404b6092fd78e20696f463bb6 https://www.encodeproject.org/files/ENCFF782HSW/@@download/ENCFF782HSW.bam released s3://encode-public/2018/11/27/b94e10f9-4aaf-4e3a-9985-1be02b283398/ENCFF782HSW.bam ENCODE3 GRCh38 archived ENCFF876ABL bam bam unfiltered alignments hg19 ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF805XXX/, /files/ENCFF807MUK/, /files/ENCFF229XSI/, /files/ENCFF431WSO/, /files/ENCFF620GLC/ 3751999282 ENCODE Processing Pipeline a321aed88918db6a6416d8255bc6a151 https://www.encodeproject.org/files/ENCFF876ABL/@@download/ENCFF876ABL.bam released s3://encode-public/2018/11/27/b55bab3a-c4b6-4c2e-94dd-6a3ac7bd4afc/ENCFF876ABL.bam ENCODE3 hg19 archived ENCFF565ADZ bam bam alignments hg19 ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF805XXX/, /files/ENCFF807MUK/, /files/ENCFF229XSI/, /files/ENCFF431WSO/, /files/ENCFF620GLC/ 3085899500 ENCODE Processing Pipeline 5a0cdc1025a11c86a904c723137e8fba https://www.encodeproject.org/files/ENCFF565ADZ/@@download/ENCFF565ADZ.bam released s3://encode-public/2018/11/27/8080303b-f295-44dc-8550-01b548fcdee9/ENCFF565ADZ.bam ENCODE3 hg19 archived ENCFF966GJD bam bam alignments GRCh38 ENCSR059VTG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2018-12-11 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF229XSI/, /files/ENCFF110MCL/, /files/ENCFF805XXX/, /files/ENCFF431WSO/, /files/ENCFF620GLC/ 3146918904 ENCODE Processing Pipeline 796737a4cb5592d3408fc50e6e9475a2 https://www.encodeproject.org/files/ENCFF966GJD/@@download/ENCFF966GJD.bam released s3://encode-public/2020/09/20/26067fad-9f88-4094-8e38-0b660e781971/ENCFF966GJD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF494VVY bam bam unfiltered alignments hg19 ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF258YTR/, /files/ENCFF910GLH/ 7009851357 ENCODE Processing Pipeline 4e1853b2f7abca6df70326117c06611f https://www.encodeproject.org/files/ENCFF494VVY/@@download/ENCFF494VVY.bam released s3://encode-public/2018/02/22/67749ec9-163d-4faa-af77-0f41a59e1548/ENCFF494VVY.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF258YTR fastq fastq reads ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF910GLH/ 3213532905 Michael Snyder, Stanford f8a353dd83997aa5507244db81768771 SRA:SRR8660039 https://www.encodeproject.org/files/ENCFF258YTR/@@download/ENCFF258YTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF514OKS/, /files/ENCFF144ZOK/ released s3://encode-public/2016/04/01/b77add91-3f7c-44a7-b1ee-72643e6518dd/ENCFF258YTR.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF910GLH fastq fastq reads ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF258YTR/ 3291524948 Michael Snyder, Stanford 09b7a59b1b60d2ec4025fceb4da34ab1 SRA:SRR8660039 https://www.encodeproject.org/files/ENCFF910GLH/@@download/ENCFF910GLH.fastq.gz Illumina HiSeq 2000 /files/ENCFF514OKS/, /files/ENCFF144ZOK/ released s3://encode-public/2016/04/01/bfd2f512-d6df-4b48-aa03-60fe6f7caaca/ENCFF910GLH.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF139VKC bam bam alignments hg19 ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF258YTR/, /files/ENCFF910GLH/ 5965153904 ENCODE Processing Pipeline fa118dc43d54564faf3658eeb487660f https://www.encodeproject.org/files/ENCFF139VKC/@@download/ENCFF139VKC.bam released s3://encode-public/2016/05/21/93276450-98d5-4096-b110-be241afca390/ENCFF139VKC.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF819OTY bam bam unfiltered alignments GRCh38 ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF258YTR/, /files/ENCFF910GLH/ 7022217333 ENCODE Processing Pipeline 341466d3a10305ae6b1bec1e8274b723 https://www.encodeproject.org/files/ENCFF819OTY/@@download/ENCFF819OTY.bam released s3://encode-public/2016/10/29/c2ccb029-8b16-4783-b9ad-79191b89e784/ENCFF819OTY.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF816BIC bam bam alignments GRCh38 ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF258YTR/, /files/ENCFF910GLH/ 5970967580 ENCODE Processing Pipeline 43ba709df042eb3d59317f132af8aa32 https://www.encodeproject.org/files/ENCFF816BIC/@@download/ENCFF816BIC.bam released s3://encode-public/2016/10/29/fff3c8e8-9c18-4b16-9f41-b16ec2badb8e/ENCFF816BIC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF465BLI bam bam unfiltered alignments GRCh38 ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF258YTR/, /files/ENCFF910GLH/ 6948868970 ENCODE Processing Pipeline fda25723b43f8e9c6b52aca7b3c2315e https://www.encodeproject.org/files/ENCFF465BLI/@@download/ENCFF465BLI.bam released s3://encode-public/2020/06/02/0ac7377a-7775-4edf-b7f0-40aad8639713/ENCFF465BLI.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF864WRW bam bam alignments GRCh38 ENCSR614FBE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-104'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2114/'], '@type': ['Target', 'Item'], 'name': 'ETS2-human', 'label': 'ETS2', '@id': '/targets/ETS2-human/', 'title': 'ETS2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0367a2c-5473-4660-853c-6b1302fad8eb', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF258YTR/, /files/ENCFF910GLH/ 5654112435 ENCODE Processing Pipeline a0a900375073cb77bdbaf8f62afd6a25 https://www.encodeproject.org/files/ENCFF864WRW/@@download/ENCFF864WRW.bam released s3://encode-public/2020/06/02/d32a75f9-5c0c-4338-96b6-e42b7bb36b37/ENCFF864WRW.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF790YCI bigWig bigWig read-depth normalized signal dm6 ENCSR111RAO Control ChIP-seq /fly-donors/ENCDO172KXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42392/'], '@type': ['Target', 'Item'], 'name': 'trem-dmelanogaster', 'label': 'trem', '@id': '/targets/trem-dmelanogaster/', 'title': 'trem (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': 'be3d2cba-7743-49fb-85d6-e7e01feee8ef', 'status': 'released'} dm3 3R 15850154 15870167 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF437MUF/ 17715565 Kevin White, UChicago cef55d86174af3d3b5dbf5ee0357aba9 https://www.encodeproject.org/files/ENCFF790YCI/@@download/ENCFF790YCI.bigWig released s3://encode-public/2019/06/18/7534b1ab-fe19-4864-ad03-e9192d9903c3/ENCFF790YCI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF953HEE fastq fastq reads ENCSR111RAO Control ChIP-seq /fly-donors/ENCDO172KXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42392/'], '@type': ['Target', 'Item'], 'name': 'trem-dmelanogaster', 'label': 'trem', '@id': '/targets/trem-dmelanogaster/', 'title': 'trem (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': 'be3d2cba-7743-49fb-85d6-e7e01feee8ef', 'status': 'released'} dm3 3R 15850154 15870167 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 803286238 Kevin White, UChicago 34c0ed7b142eced6b003da8d10983643 https://www.encodeproject.org/files/ENCFF953HEE/@@download/ENCFF953HEE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/7f3d4f6e-01b9-4cdf-b928-e1f8b073eb36/ENCFF953HEE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF437MUF bam bam alignments dm6 ENCSR111RAO Control ChIP-seq /fly-donors/ENCDO172KXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42392/'], '@type': ['Target', 'Item'], 'name': 'trem-dmelanogaster', 'label': 'trem', '@id': '/targets/trem-dmelanogaster/', 'title': 'trem (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': 'be3d2cba-7743-49fb-85d6-e7e01feee8ef', 'status': 'released'} dm3 3R 15850154 15870167 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF953HEE/, /files/ENCFF479RCH/ 1064777501 Kevin White, UChicago 8a7115f52733a75c25b0e0d8334d5ab9 https://www.encodeproject.org/files/ENCFF437MUF/@@download/ENCFF437MUF.bam released s3://encode-public/2019/06/18/aa78a97f-edc5-4c96-ac8d-2cd1324d45d4/ENCFF437MUF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF213OOY bigWig bigWig signal of unique reads dm6 ENCSR111RAO Control ChIP-seq /fly-donors/ENCDO172KXN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42392/'], '@type': ['Target', 'Item'], 'name': 'trem-dmelanogaster', 'label': 'trem', '@id': '/targets/trem-dmelanogaster/', 'title': 'trem (Drosophila melanogaster)', 'investigated_as': ['DNA repair'], 'uuid': 'be3d2cba-7743-49fb-85d6-e7e01feee8ef', 'status': 'released'} dm3 3R 15850154 15870167 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF437MUF/ 17688908 Kevin White, UChicago 5dcf154efb4560f79a0cd7b1ca688e15 https://www.encodeproject.org/files/ENCFF213OOY/@@download/ENCFF213OOY.bigWig released s3://encode-public/2019/06/18/71a4e472-7fae-4a86-af90-7ea5fa6e9cfa/ENCFF213OOY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF796DMQ fastq fastq reads ENCSR884AHC Control ChIP-seq /fly-donors/ENCDO379LBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43161/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m8-HLH-dmelanogaster', 'label': 'E(spl)m8-HLH', '@id': '/targets/E(spl)m8-HLH-dmelanogaster/', 'title': 'E(spl)m8-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cad4ae2d-01c5-4163-9bd2-b3711fddf5d4', 'status': 'released'} dm3 3R 21854677 21878208 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 665615393 Kevin White, UChicago c07414f9ccae9d71e038ed3a7caeb51a https://www.encodeproject.org/files/ENCFF796DMQ/@@download/ENCFF796DMQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/464e8e97-3bf0-4d73-ac68-266aea82e4b9/ENCFF796DMQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF046YVO bam bam alignments dm6 ENCSR884AHC Control ChIP-seq /fly-donors/ENCDO379LBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43161/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m8-HLH-dmelanogaster', 'label': 'E(spl)m8-HLH', '@id': '/targets/E(spl)m8-HLH-dmelanogaster/', 'title': 'E(spl)m8-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cad4ae2d-01c5-4163-9bd2-b3711fddf5d4', 'status': 'released'} dm3 3R 21854677 21878208 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF796DMQ/, /files/ENCFF479RCH/ 894877986 Kevin White, UChicago 8ca70c48629364f008be79ff573f13ab https://www.encodeproject.org/files/ENCFF046YVO/@@download/ENCFF046YVO.bam released s3://encode-public/2019/04/13/f10a6c3b-5c0c-4fad-a009-ea1bf0b049fd/ENCFF046YVO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF869IQF bigWig bigWig signal of unique reads dm6 ENCSR884AHC Control ChIP-seq /fly-donors/ENCDO379LBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43161/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m8-HLH-dmelanogaster', 'label': 'E(spl)m8-HLH', '@id': '/targets/E(spl)m8-HLH-dmelanogaster/', 'title': 'E(spl)m8-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cad4ae2d-01c5-4163-9bd2-b3711fddf5d4', 'status': 'released'} dm3 3R 21854677 21878208 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF046YVO/ 17567316 Kevin White, UChicago 549ab6584954861256c379938a8ae1d4 https://www.encodeproject.org/files/ENCFF869IQF/@@download/ENCFF869IQF.bigWig released s3://encode-public/2019/04/16/184db8a2-d557-4866-bf2b-f9a6e33750ea/ENCFF869IQF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF630ZRP bigWig bigWig read-depth normalized signal dm6 ENCSR884AHC Control ChIP-seq /fly-donors/ENCDO379LBL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43161/'], '@type': ['Target', 'Item'], 'name': 'E(spl)m8-HLH-dmelanogaster', 'label': 'E(spl)m8-HLH', '@id': '/targets/E(spl)m8-HLH-dmelanogaster/', 'title': 'E(spl)m8-HLH (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'cad4ae2d-01c5-4163-9bd2-b3711fddf5d4', 'status': 'released'} dm3 3R 21854677 21878208 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF046YVO/ 17562791 Kevin White, UChicago 658d4504c68c7eccbd986250564329d7 https://www.encodeproject.org/files/ENCFF630ZRP/@@download/ENCFF630ZRP.bigWig released s3://encode-public/2019/04/16/2a795277-e583-485a-80d5-a765557cb89a/ENCFF630ZRP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF371ASL fastq fastq reads ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF631HIV/ 3363548005 Richard Myers, HAIB 6063ee6c4b7e4947e0916c47f39ecba3 SRA:SRR8659938 https://www.encodeproject.org/files/ENCFF371ASL/@@download/ENCFF371ASL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/97ebc1cb-0a15-4d9b-a04d-52f377a6ac2e/ENCFF371ASL.fastq.gz ENCFF631HIV fastq fastq reads ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF371ASL/ 3519404687 Richard Myers, HAIB ce369d07255213383043575c05f6ca0f SRA:SRR8659938 https://www.encodeproject.org/files/ENCFF631HIV/@@download/ENCFF631HIV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/03e57c8c-fac5-42e1-b471-a77f98036678/ENCFF631HIV.fastq.gz ENCFF544KDH bam bam unfiltered alignments hg19 ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF631HIV/, /files/ENCFF371ASL/, /files/ENCFF807MUK/ 8042203735 ENCODE Processing Pipeline 830299dca1ac997a4b05e3b6b0292bbc https://www.encodeproject.org/files/ENCFF544KDH/@@download/ENCFF544KDH.bam released s3://encode-public/2017/02/02/92be5e08-e797-4c8d-8dfe-647d661f09cb/ENCFF544KDH.bam ENCODE3 hg19 archived ENCFF267HPF bam bam alignments hg19 ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF631HIV/, /files/ENCFF371ASL/, /files/ENCFF807MUK/ 5756740789 ENCODE Processing Pipeline 3e16767655657b4d68fa12f978039f57 https://www.encodeproject.org/files/ENCFF267HPF/@@download/ENCFF267HPF.bam released s3://encode-public/2017/02/02/a17bd242-6abd-4861-9241-08943f1357f1/ENCFF267HPF.bam ENCODE3 hg19 archived ENCFF803PDD bam bam alignments GRCh38 ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF631HIV/, /files/ENCFF371ASL/, /files/ENCFF643CGH/ 5762491321 ENCODE Processing Pipeline e213b19d136a5013bcc2e7d0ad9a3da1 https://www.encodeproject.org/files/ENCFF803PDD/@@download/ENCFF803PDD.bam released s3://encode-public/2017/02/02/4e45b3c0-c573-4b21-826a-412d2310ec0d/ENCFF803PDD.bam ENCODE3 GRCh38 archived ENCFF088MWO bam bam unfiltered alignments GRCh38 ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF631HIV/, /files/ENCFF371ASL/, /files/ENCFF643CGH/ 8070512692 ENCODE Processing Pipeline 2ffe3826928377c84d866ffc4a145a20 https://www.encodeproject.org/files/ENCFF088MWO/@@download/ENCFF088MWO.bam released s3://encode-public/2017/02/02/128d92e2-fd3a-459f-9f4b-d09378322c7c/ENCFF088MWO.bam ENCODE3 GRCh38 archived ENCFF340REE bam bam alignments GRCh38 ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF371ASL/, /files/ENCFF631HIV/ 5482047074 ENCODE Processing Pipeline c5db12672613c6b46e2da7000d58aed1 https://www.encodeproject.org/files/ENCFF340REE/@@download/ENCFF340REE.bam released s3://encode-public/2020/06/06/787bc8a5-d250-4d35-98a0-4f194e1cb5aa/ENCFF340REE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF175MNO bam bam unfiltered alignments GRCh38 ENCSR512MNA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002106 spleen tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF371ASL/, /files/ENCFF631HIV/ 8060634625 ENCODE Processing Pipeline d8de849d6a1cf3194fedcf760a523e38 https://www.encodeproject.org/files/ENCFF175MNO/@@download/ENCFF175MNO.bam released s3://encode-public/2020/06/06/b01fc022-f63a-4098-ab5e-c8cf8ec2f69a/ENCFF175MNO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF752JEL fastq fastq reads ENCSR754WSC Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 621676112 Kevin White, UChicago 789a7f3f643aea87b896a8668efe196b https://www.encodeproject.org/files/ENCFF752JEL/@@download/ENCFF752JEL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/a8793132-3d75-4f85-9f09-32572c4594d6/ENCFF752JEL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF433YFS bam bam alignments dm6 ENCSR754WSC Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF752JEL/, /files/ENCFF479RCH/ 817577548 Kevin White, UChicago bac858a1a89e994efce1d82883911c01 https://www.encodeproject.org/files/ENCFF433YFS/@@download/ENCFF433YFS.bam released s3://encode-public/2019/04/13/3018d898-9fc6-4ab9-b7a0-89b2f3dd6494/ENCFF433YFS.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF840OIT bigWig bigWig read-depth normalized signal dm6 ENCSR754WSC Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF433YFS/ 17566805 Kevin White, UChicago 51d194d284a713b228b2f54ff800fb21 https://www.encodeproject.org/files/ENCFF840OIT/@@download/ENCFF840OIT.bigWig released s3://encode-public/2019/04/16/f43140a3-f73b-4358-8bc3-a8692977b423/ENCFF840OIT.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF338NHC bigWig bigWig signal of unique reads dm6 ENCSR754WSC Control ChIP-seq /fly-donors/ENCDO916AQW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35540/'], '@type': ['Target', 'Item'], 'name': 'EcR-dmelanogaster', 'label': 'EcR', '@id': '/targets/EcR-dmelanogaster/', 'title': 'EcR (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0e0e9f7b-3043-4a25-aceb-3abe6b2cc13b', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF433YFS/ 17549633 Kevin White, UChicago 7204b3fde39dd1e58268f59db886a8bb https://www.encodeproject.org/files/ENCFF338NHC/@@download/ENCFF338NHC.bigWig released s3://encode-public/2019/04/16/163a37b0-4d76-497e-9817-ceb7ff041429/ENCFF338NHC.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF374DXK fastq fastq reads ENCSR213ZCM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1943'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1649/'], '@type': ['Target', 'Item'], 'name': 'DDIT3-human', 'label': 'DDIT3', '@id': '/targets/DDIT3-human/', 'title': 'DDIT3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e22cb03a-8732-4d58-92ba-b7df243db17f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF781VAA/ 3022001916 Michael Snyder, Stanford 4a7d48df488da4a1aa4f2465d05b3545 https://www.encodeproject.org/files/ENCFF374DXK/@@download/ENCFF374DXK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/0116d1fd-ee76-461f-a51f-81ffbce2f722/ENCFF374DXK.fastq.gz mild to moderate bottlenecking ENCFF781VAA fastq fastq reads ENCSR213ZCM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1943'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1649/'], '@type': ['Target', 'Item'], 'name': 'DDIT3-human', 'label': 'DDIT3', '@id': '/targets/DDIT3-human/', 'title': 'DDIT3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e22cb03a-8732-4d58-92ba-b7df243db17f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF374DXK/ 3340540612 Michael Snyder, Stanford ad90e2ddb6e8c30a63a3a55d57164d9e https://www.encodeproject.org/files/ENCFF781VAA/@@download/ENCFF781VAA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/b57c7926-4ebc-4f3e-87d3-2083855c0b46/ENCFF781VAA.fastq.gz mild to moderate bottlenecking ENCFF041VVY bam bam unfiltered alignments GRCh38 ENCSR213ZCM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1943'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1649/'], '@type': ['Target', 'Item'], 'name': 'DDIT3-human', 'label': 'DDIT3', '@id': '/targets/DDIT3-human/', 'title': 'DDIT3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e22cb03a-8732-4d58-92ba-b7df243db17f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF374DXK/, /files/ENCFF781VAA/ 5989358436 ENCODE Processing Pipeline 8e2297d4381f30ae6cbabd0451bcea59 https://www.encodeproject.org/files/ENCFF041VVY/@@download/ENCFF041VVY.bam released s3://encode-public/2020/04/20/fe2b98a4-c4e3-42f4-b83e-2ef33489b498/ENCFF041VVY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF464JIQ bam bam alignments GRCh38 ENCSR213ZCM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1943'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1649/'], '@type': ['Target', 'Item'], 'name': 'DDIT3-human', 'label': 'DDIT3', '@id': '/targets/DDIT3-human/', 'title': 'DDIT3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e22cb03a-8732-4d58-92ba-b7df243db17f', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF374DXK/, /files/ENCFF781VAA/ 4669662305 ENCODE Processing Pipeline 571162ecbdad6f30586af36badd7cee5 https://www.encodeproject.org/files/ENCFF464JIQ/@@download/ENCFF464JIQ.bam released s3://encode-public/2020/04/20/29c3a7a6-926a-43cb-bd6f-a5a9e790713c/ENCFF464JIQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF354FAR fastq fastq reads ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF869CER/ 1434616511 Richard Myers, HAIB 62bb7a9d7a38b2245044e5c095bb9926 SRA:SRR6213665 https://www.encodeproject.org/files/ENCFF354FAR/@@download/ENCFF354FAR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/71a39749-c4ed-4b2b-9e3e-a6682df4f4cc/ENCFF354FAR.fastq.gz ENCFF869CER fastq fastq reads ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF354FAR/ 1466714746 Richard Myers, HAIB e1e5364035759d21aadee24a6de08e7d SRA:SRR6213665 https://www.encodeproject.org/files/ENCFF869CER/@@download/ENCFF869CER.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/93c42b54-cebc-49c3-80b6-947b3faa11d1/ENCFF869CER.fastq.gz ENCFF321SWT bam bam unfiltered alignments GRCh38 ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF869CER/, /files/ENCFF643CGH/, /files/ENCFF354FAR/ 3481478754 ENCODE Processing Pipeline 10ff72fa7f0caa9e031c98afe64d08c0 https://www.encodeproject.org/files/ENCFF321SWT/@@download/ENCFF321SWT.bam released s3://encode-public/2017/02/02/152f1107-a4aa-4eba-af3c-51539781f130/ENCFF321SWT.bam ENCODE3 GRCh38 archived ENCFF514TFB bam bam unfiltered alignments hg19 ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF869CER/, /files/ENCFF807MUK/, /files/ENCFF354FAR/ 3468499093 ENCODE Processing Pipeline e8c484f79082fd50012fd2cae35b58b9 https://www.encodeproject.org/files/ENCFF514TFB/@@download/ENCFF514TFB.bam released s3://encode-public/2017/02/02/ee611652-c90a-45b8-a67b-deb369df0d14/ENCFF514TFB.bam ENCODE3 hg19 archived ENCFF963ZTK bam bam alignments hg19 ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF869CER/, /files/ENCFF807MUK/, /files/ENCFF354FAR/ 2567555386 ENCODE Processing Pipeline 1da6872cf2bc10006a5927c786221e23 https://www.encodeproject.org/files/ENCFF963ZTK/@@download/ENCFF963ZTK.bam released s3://encode-public/2017/02/02/83615a84-fb03-4186-8af5-33f160591a7b/ENCFF963ZTK.bam ENCODE3 hg19 archived ENCFF568QOC bam bam alignments GRCh38 ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF869CER/, /files/ENCFF643CGH/, /files/ENCFF354FAR/ 2569518206 ENCODE Processing Pipeline f202e028c33c7afb0f93902d95a91765 https://www.encodeproject.org/files/ENCFF568QOC/@@download/ENCFF568QOC.bam released s3://encode-public/2017/02/02/b1e85c68-4114-44d3-9cac-47c8682caa1a/ENCFF568QOC.bam ENCODE3 GRCh38 archived ENCFF227ICQ bam bam unfiltered alignments GRCh38 ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF354FAR/, /files/ENCFF869CER/ 3640011424 ENCODE Processing Pipeline 5bc51531a25fef3a5bc2c4f693433a3a https://www.encodeproject.org/files/ENCFF227ICQ/@@download/ENCFF227ICQ.bam released s3://encode-public/2020/06/06/44025139-33e3-49ec-9ebb-cb52734f9474/ENCFF227ICQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF862JZP bam bam alignments GRCh38 ENCSR398EZJ Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF354FAR/, /files/ENCFF869CER/ 2548836359 ENCODE Processing Pipeline a51b322091f1bc7897cfa863cfcef346 https://www.encodeproject.org/files/ENCFF862JZP/@@download/ENCFF862JZP.bam released s3://encode-public/2020/06/06/33da764a-405b-44be-b933-dd64edfa953e/ENCFF862JZP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF392NML fastq fastq reads ENCSR796QVL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1602'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7637/'], '@type': ['Target', 'Item'], 'name': 'ZNF84-human', 'label': 'ZNF84', '@id': '/targets/ZNF84-human/', 'title': 'ZNF84 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b314dfa1-062b-4977-bf68-19f60dad9a92', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF041SXX/ 2199382098 Michael Snyder, Stanford 32544fe6312b7f589e035628dcd6fe53 https://www.encodeproject.org/files/ENCFF392NML/@@download/ENCFF392NML.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/f6894e41-1287-4981-b1ac-382b5112f333/ENCFF392NML.fastq.gz ENCFF041SXX fastq fastq reads ENCSR796QVL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1602'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7637/'], '@type': ['Target', 'Item'], 'name': 'ZNF84-human', 'label': 'ZNF84', '@id': '/targets/ZNF84-human/', 'title': 'ZNF84 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b314dfa1-062b-4977-bf68-19f60dad9a92', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF392NML/ 2606745556 Michael Snyder, Stanford 625b0f17b517e98c595de563287ccdca https://www.encodeproject.org/files/ENCFF041SXX/@@download/ENCFF041SXX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/bbd1748d-eddd-42f5-94a0-ac5b5e6172b3/ENCFF041SXX.fastq.gz ENCFF079EGV bam bam unfiltered alignments GRCh38 ENCSR796QVL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1602'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7637/'], '@type': ['Target', 'Item'], 'name': 'ZNF84-human', 'label': 'ZNF84', '@id': '/targets/ZNF84-human/', 'title': 'ZNF84 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b314dfa1-062b-4977-bf68-19f60dad9a92', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF392NML/, /files/ENCFF041SXX/ 4919425395 ENCODE Processing Pipeline d300724cd6f369fb12f3090d46e4a223 https://www.encodeproject.org/files/ENCFF079EGV/@@download/ENCFF079EGV.bam released s3://encode-public/2020/04/20/f450a48f-3a34-46b0-aec8-0f28976a1e63/ENCFF079EGV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF811SJJ bam bam alignments GRCh38 ENCSR796QVL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1602'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7637/'], '@type': ['Target', 'Item'], 'name': 'ZNF84-human', 'label': 'ZNF84', '@id': '/targets/ZNF84-human/', 'title': 'ZNF84 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'b314dfa1-062b-4977-bf68-19f60dad9a92', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF392NML/, /files/ENCFF041SXX/ 4006617475 ENCODE Processing Pipeline 910d75d098b45cacd9f7bbb664c5ea37 https://www.encodeproject.org/files/ENCFF811SJJ/@@download/ENCFF811SJJ.bam released s3://encode-public/2020/04/20/1583285d-0a82-4264-92c2-f7877de30de7/ENCFF811SJJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF732JFN fastq fastq reads ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF589EEX/ 2572465382 Richard Myers, HAIB 03986cf2a7f90524319d0432e963d65e SRA:SRR6214031 https://www.encodeproject.org/files/ENCFF732JFN/@@download/ENCFF732JFN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/0928474f-4227-430d-b4aa-bedfd1c1ddcc/ENCFF732JFN.fastq.gz ENCFF589EEX fastq fastq reads ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF732JFN/ 2701054368 Richard Myers, HAIB 552774a4bdc978afb2cd0eda43c12e52 SRA:SRR6214031 https://www.encodeproject.org/files/ENCFF589EEX/@@download/ENCFF589EEX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/a9f2dac7-a2b8-4384-9532-84faf0868965/ENCFF589EEX.fastq.gz ENCFF507VFC bam bam unfiltered alignments hg19 ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF732JFN/, /files/ENCFF807MUK/, /files/ENCFF589EEX/ 6311459442 ENCODE Processing Pipeline 9c660caf1113c9f3884b02697a965cee https://www.encodeproject.org/files/ENCFF507VFC/@@download/ENCFF507VFC.bam released s3://encode-public/2017/02/02/975a8e26-97ef-4ebc-b0b3-9eba85c4b683/ENCFF507VFC.bam ENCODE3 hg19 archived ENCFF125ZKE bam bam alignments hg19 ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF732JFN/, /files/ENCFF807MUK/, /files/ENCFF589EEX/ 4469001902 ENCODE Processing Pipeline 8c21ba1aab82a1fb1defa6c62618608c https://www.encodeproject.org/files/ENCFF125ZKE/@@download/ENCFF125ZKE.bam released s3://encode-public/2017/02/02/b9472f67-0337-4de1-8986-b7ea5e95f945/ENCFF125ZKE.bam ENCODE3 hg19 archived ENCFF382RBD bam bam unfiltered alignments GRCh38 ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF732JFN/, /files/ENCFF643CGH/, /files/ENCFF589EEX/ 6341153742 ENCODE Processing Pipeline e6f40da249f8e8d50914853dc0ed87c8 https://www.encodeproject.org/files/ENCFF382RBD/@@download/ENCFF382RBD.bam released s3://encode-public/2017/02/02/050d9faa-1754-4453-9fcb-c0cf4270844e/ENCFF382RBD.bam ENCODE3 GRCh38 archived ENCFF999KUP bam bam alignments GRCh38 ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF732JFN/, /files/ENCFF643CGH/, /files/ENCFF589EEX/ 4476004895 ENCODE Processing Pipeline 226bb4250fffb544cd52ab37a2202bb5 https://www.encodeproject.org/files/ENCFF999KUP/@@download/ENCFF999KUP.bam released s3://encode-public/2017/02/02/86020afb-8bbe-4f73-9099-2063dd131059/ENCFF999KUP.bam ENCODE3 GRCh38 archived ENCFF489HLT bam bam alignments GRCh38 ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF732JFN/, /files/ENCFF589EEX/ 4250119662 ENCODE Processing Pipeline eb54ee9096486b1756e2e3665fe31ec7 https://www.encodeproject.org/files/ENCFF489HLT/@@download/ENCFF489HLT.bam released s3://encode-public/2020/10/28/31f1c97e-10f6-48ec-b308-3bf61dfc2639/ENCFF489HLT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF216YAS bam bam unfiltered alignments GRCh38 ENCSR728WVG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF732JFN/, /files/ENCFF589EEX/ 6365550610 ENCODE Processing Pipeline 753f105a075c163f71f3a0e8d2da677e https://www.encodeproject.org/files/ENCFF216YAS/@@download/ENCFF216YAS.bam released s3://encode-public/2020/10/28/38746c93-5487-42a0-9152-985ce39cd8c7/ENCFF216YAS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF849QBH fastq fastq reads ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 single-ended 519841243 Vishwanath Iyer, UTA 2ee665140701cddd57fefaccf7afca37 https://www.encodeproject.org/files/ENCFF849QBH/@@download/ENCFF849QBH.fastq.gz Illumina Genome Analyzer released s3://encode-public/2016/06/23/b4e276e3-7dc0-4ecd-a0f4-7b44dfb4392e/ENCFF849QBH.fastq.gz low read length insufficient read depth ENCFF631TYY fastq fastq reads ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 single-ended 455932548 Vishwanath Iyer, UTA d8a89b671b08c5e93df77f9965f7d2a6 https://www.encodeproject.org/files/ENCFF631TYY/@@download/ENCFF631TYY.fastq.gz Illumina Genome Analyzer released s3://encode-public/2016/06/23/6ba8d2bd-8927-45bb-a044-6f84cfa8e2e5/ENCFF631TYY.fastq.gz low read length insufficient read depth ENCFF982TBF bam bam alignments hg19 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF631TYY/ 692355237 Vishwanath Iyer, UTA a0f3513ec4f0a902b82eef8b7fa716ac https://www.encodeproject.org/files/ENCFF982TBF/@@download/ENCFF982TBF.bam archived s3://encode-public/2016/06/23/033ebb2a-6c3f-4856-8314-fa4a8ab02683/ENCFF982TBF.bam Lab custom hg19 archived low read length insufficient read depth ENCFF227EPC bam bam alignments hg19 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF849QBH/ 799183108 Vishwanath Iyer, UTA f67fc98b62f1b834c07b03ec0de13e26 https://www.encodeproject.org/files/ENCFF227EPC/@@download/ENCFF227EPC.bam archived s3://encode-public/2016/06/23/e2944239-be96-4fbb-9d74-e07a15d93cf5/ENCFF227EPC.bam Lab custom hg19 archived low read length insufficient read depth ENCFF326QAX bam bam unfiltered alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF849QBH/ 728385131 ENCODE Processing Pipeline 1e54042739800cc1da8364fba2f8548a https://www.encodeproject.org/files/ENCFF326QAX/@@download/ENCFF326QAX.bam released s3://encode-public/2016/10/26/f1baf84e-aa08-4b68-9f1c-d17b7230d6da/ENCFF326QAX.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF451NZB bam bam unfiltered alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF631TYY/ 642159480 ENCODE Processing Pipeline 1df8aaaa25d7887eb35c94d21729f70c https://www.encodeproject.org/files/ENCFF451NZB/@@download/ENCFF451NZB.bam released s3://encode-public/2016/10/26/036ebefb-e7d4-4b7d-b0cc-273a72bcd038/ENCFF451NZB.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF595DFF bam bam alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF849QBH/ 428399792 ENCODE Processing Pipeline 6801db2b8131cfb33a166a76edf98c98 https://www.encodeproject.org/files/ENCFF595DFF/@@download/ENCFF595DFF.bam released s3://encode-public/2016/10/26/e53377e9-0f33-4c1e-b4eb-a9726096a4ff/ENCFF595DFF.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF286XEY bam bam alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF631TYY/ 375264713 ENCODE Processing Pipeline c40056314c8c8b190ad70b412d8f3004 https://www.encodeproject.org/files/ENCFF286XEY/@@download/ENCFF286XEY.bam released s3://encode-public/2016/10/26/16cef083-52c7-4220-9320-ecc8eeb7924a/ENCFF286XEY.bam ENCODE3 GRCh38 archived low read length insufficient read depth ENCFF235OMO bam bam alignments hg19 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF631TYY/ 375676628 ENCODE Processing Pipeline 7ce16db1549e737ec725cae4e70084f6 https://www.encodeproject.org/files/ENCFF235OMO/@@download/ENCFF235OMO.bam released s3://encode-public/2017/04/11/1d2d0783-1060-45da-a3b0-1935bc1340f1/ENCFF235OMO.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF899QNC bam bam unfiltered alignments hg19 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF631TYY/ 641286028 ENCODE Processing Pipeline e3c24d42bc15d694ca25444e6f84fdc8 https://www.encodeproject.org/files/ENCFF899QNC/@@download/ENCFF899QNC.bam released s3://encode-public/2017/04/11/da39eee0-3376-4356-b887-a7086225fa42/ENCFF899QNC.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF127HBU bam bam unfiltered alignments hg19 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF849QBH/ 727533335 ENCODE Processing Pipeline 25aa46774a5f695c9cf613b32a5b9b39 https://www.encodeproject.org/files/ENCFF127HBU/@@download/ENCFF127HBU.bam released s3://encode-public/2017/04/11/c6c1a6e6-a9aa-41b8-81b8-f6b0063fc4dc/ENCFF127HBU.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF568IYC bam bam alignments hg19 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF849QBH/ 428834781 ENCODE Processing Pipeline c041c3421bd40b5dcb292be390701e88 https://www.encodeproject.org/files/ENCFF568IYC/@@download/ENCFF568IYC.bam released s3://encode-public/2017/04/11/5b837a65-671e-496b-91a6-0e213c5c1503/ENCFF568IYC.bam ENCODE3 hg19 archived low read length insufficient read depth ENCFF454DXT bam bam unfiltered alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF849QBH/ 699998468 ENCODE Processing Pipeline 3cca7bce26be7fc6c87c35a23445f24b https://www.encodeproject.org/files/ENCFF454DXT/@@download/ENCFF454DXT.bam released s3://encode-public/2020/09/03/005c0415-471c-49f0-969f-638ba0aa61c6/ENCFF454DXT.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF203EYR bam bam alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF849QBH/ 488620017 ENCODE Processing Pipeline 441ab9449f9a64558da2f011bb7a27d8 https://www.encodeproject.org/files/ENCFF203EYR/@@download/ENCFF203EYR.bam released s3://encode-public/2020/09/03/ee75b2e1-80d9-4d2f-bace-bf5eebdc1498/ENCFF203EYR.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF863URM bam bam unfiltered alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF631TYY/ 614171792 ENCODE Processing Pipeline 569adc3fc694da0886b44457e9ed1bc2 https://www.encodeproject.org/files/ENCFF863URM/@@download/ENCFF863URM.bam released s3://encode-public/2020/09/03/87952f8d-b498-4b97-844c-242bd65792ce/ENCFF863URM.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF756RCY bam bam alignments GRCh38 ENCSR678FZH Control ChIP-seq /human-donors/ENCDO268AAA/ CL:0000312 keratinocyte primary cell Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF631TYY/ 422207835 ENCODE Processing Pipeline bf60bcea49e1feee189e9dbbe6b7ffd4 https://www.encodeproject.org/files/ENCFF756RCY/@@download/ENCFF756RCY.bam released s3://encode-public/2020/09/03/0ae9768f-5a87-4e60-82f1-cdb5584d61b0/ENCFF756RCY.bam ENCODE4 v1.5.1 GRCh38 released low read length insufficient read depth ENCFF849CDI fastq fastq reads ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF842SLH/ 1661177258 Richard Myers, HAIB db88c243a495a934c28b36b3efa13fda SRA:SRR8660048 https://www.encodeproject.org/files/ENCFF849CDI/@@download/ENCFF849CDI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/c72121e0-4da4-4d62-87d9-b919e588bf8a/ENCFF849CDI.fastq.gz low read depth ENCFF842SLH fastq fastq reads ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF849CDI/ 1702170675 Richard Myers, HAIB ca09cf8df80e398d208688a7c7b3517e SRA:SRR8660048 https://www.encodeproject.org/files/ENCFF842SLH/@@download/ENCFF842SLH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/c8c867be-0969-4339-834d-efb22327062e/ENCFF842SLH.fastq.gz low read depth ENCFF476YAR bam bam unfiltered alignments GRCh38 ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF842SLH/, /files/ENCFF643CGH/, /files/ENCFF849CDI/ 4046069738 ENCODE Processing Pipeline 0c07cf09421890b6e8f460dd7eddccaa https://www.encodeproject.org/files/ENCFF476YAR/@@download/ENCFF476YAR.bam released s3://encode-public/2017/02/02/8bb3d867-e2c6-4d33-80f7-5fcf3d6b121e/ENCFF476YAR.bam ENCODE3 GRCh38 archived low read depth ENCFF121GWS bam bam unfiltered alignments hg19 ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF842SLH/, /files/ENCFF807MUK/, /files/ENCFF849CDI/ 4029099688 ENCODE Processing Pipeline 731d3a7503c464dc7d66956c39ec1ea7 https://www.encodeproject.org/files/ENCFF121GWS/@@download/ENCFF121GWS.bam released s3://encode-public/2017/02/02/b53beb73-3302-4684-bb28-d11dbd62a62a/ENCFF121GWS.bam ENCODE3 hg19 archived low read depth ENCFF661OHD bam bam alignments hg19 ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF842SLH/, /files/ENCFF807MUK/, /files/ENCFF849CDI/ 2536566258 ENCODE Processing Pipeline dd9033a56bcaffc8b287b9a03c5adeb2 https://www.encodeproject.org/files/ENCFF661OHD/@@download/ENCFF661OHD.bam released s3://encode-public/2017/02/02/bbb5d66f-824d-40da-a719-154bf46fb1bd/ENCFF661OHD.bam ENCODE3 hg19 archived low read depth ENCFF736RDZ bam bam alignments GRCh38 ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF842SLH/, /files/ENCFF643CGH/, /files/ENCFF849CDI/ 2540508415 ENCODE Processing Pipeline 0dd338a7e25d3ed13bb1c9e9c0b21a76 https://www.encodeproject.org/files/ENCFF736RDZ/@@download/ENCFF736RDZ.bam released s3://encode-public/2017/02/02/1307baf7-4bb0-4d02-8c49-150428825b7e/ENCFF736RDZ.bam ENCODE3 GRCh38 archived low read depth ENCFF487HNJ bam bam unfiltered alignments GRCh38 ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF849CDI/, /files/ENCFF842SLH/ 4151417501 ENCODE Processing Pipeline 5df70163515ef19a1637fdda1f52c245 https://www.encodeproject.org/files/ENCFF487HNJ/@@download/ENCFF487HNJ.bam released s3://encode-public/2020/06/06/c2f0863d-3eff-43ad-8438-244795ddf853/ENCFF487HNJ.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF907GLI bam bam alignments GRCh38 ENCSR100FGR Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF849CDI/, /files/ENCFF842SLH/ 2385627214 ENCODE Processing Pipeline b7c6cb17e0300f9f7718da884ba00517 https://www.encodeproject.org/files/ENCFF907GLI/@@download/ENCFF907GLI.bam released s3://encode-public/2020/06/06/9a5dfb59-8b9e-455e-81b1-c75b8b36ea80/ENCFF907GLI.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF001HTM bam bam alignments hg19 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HTT/ 688367491 John Stamatoyannopoulos, UW 87bf94aee05213d3abd24e4256b14d29 https://www.encodeproject.org/files/ENCFF001HTM/@@download/ENCFF001HTM.bam archived s3://encode-public/2011/06/25/4a489613-d05d-4d94-b6f0-e96e9023055a/ENCFF001HTM.bam Lab custom hg19 archived low read depth, low read length ENCFF001HTN bigWig bigWig raw signal hg19 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 /files/ENCFF001HTM/ 160040490 John Stamatoyannopoulos, UW 171d60dcfd75ec4e646532c6688a1ef3 https://www.encodeproject.org/files/ENCFF001HTN/@@download/ENCFF001HTN.bigWig archived s3://encode-public/2011/06/25/4788b0c2-2aae-4394-a9af-196cdff4597d/ENCFF001HTN.bigWig Lab custom hg19 archived low read depth, low read length ENCFF001HTT fastq fastq reads ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 single-ended 723835415 John Stamatoyannopoulos, UW 5e2673f266277918b7a10498ef9303b7 https://www.encodeproject.org/files/ENCFF001HTT/@@download/ENCFF001HTT.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/06/25/9d1f1b47-ad54-49e3-89e4-5e3157395584/ENCFF001HTT.fastq.gz low read depth, low read length ENCFF873PSH bam bam alignments GRCh38 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HTT/ 631129527 ENCODE Processing Pipeline dc67c8e1a014090f272cd9a300e58a40 https://www.encodeproject.org/files/ENCFF873PSH/@@download/ENCFF873PSH.bam released s3://encode-public/2016/07/28/430b9092-28ae-4c68-a2eb-aa026f8b6450/ENCFF873PSH.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF518TNE bam bam unfiltered alignments GRCh38 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF001HTT/ 897997825 ENCODE Processing Pipeline 03bd8f55a1130d7388dda80ec1a3078f https://www.encodeproject.org/files/ENCFF518TNE/@@download/ENCFF518TNE.bam released s3://encode-public/2016/07/28/3160e6f4-66ac-4efa-8683-14298b84ddd8/ENCFF518TNE.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF789FCV bam bam unfiltered alignments hg19 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HTT/ 893582960 ENCODE Processing Pipeline 0966967e266c5fb102b763c497160cf6 https://www.encodeproject.org/files/ENCFF789FCV/@@download/ENCFF789FCV.bam released s3://encode-public/2016/11/13/f8774c2d-1bfa-4ebb-95d2-7d95e967faff/ENCFF789FCV.bam ENCODE3 hg19 archived low read depth, low read length ENCFF465CVS bam bam alignments hg19 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF001HTT/ 631488494 ENCODE Processing Pipeline 9b5d1986472fed65c1c4cac9379d07f9 https://www.encodeproject.org/files/ENCFF465CVS/@@download/ENCFF465CVS.bam released s3://encode-public/2016/11/13/df381e61-b5fc-45b3-8c31-bc7db9fbcd65/ENCFF465CVS.bam ENCODE3 hg19 archived low read depth, low read length ENCFF368VWG bam bam unfiltered alignments GRCh38 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HTT/, /files/ENCFF110MCL/ 876155358 ENCODE Processing Pipeline 199dd9389cb2d55ea9c174aebf0f4c6c https://www.encodeproject.org/files/ENCFF368VWG/@@download/ENCFF368VWG.bam released s3://encode-public/2020/09/03/ba470b9a-0943-4d89-be0e-37d95fbb6660/ENCFF368VWG.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF897QAS bam bam alignments GRCh38 ENCSR000DWA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-03-17 ENCODE see document 1 1_1 36 /files/ENCFF001HTT/, /files/ENCFF110MCL/ 694049366 ENCODE Processing Pipeline 62149d30052a04c33da026f8fbde6707 https://www.encodeproject.org/files/ENCFF897QAS/@@download/ENCFF897QAS.bam released s3://encode-public/2020/09/03/915759cb-0526-4e03-8301-310b5ea138bb/ENCFF897QAS.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF797TKU fastq fastq reads ENCSR724LHB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-937'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90592/'], '@type': ['Target', 'Item'], 'name': 'ZNF700-human', 'label': 'ZNF700', '@id': '/targets/ZNF700-human/', 'title': 'ZNF700 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74b1c66-3fc5-4ef6-abbf-577bf73cca2d', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF329YQD/ 2040369387 Michael Snyder, Stanford 0917644dab94ce2245e74da4ff7f6fb6 https://www.encodeproject.org/files/ENCFF797TKU/@@download/ENCFF797TKU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/72d34190-8f7c-424c-8edd-f6cb069ec774/ENCFF797TKU.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF329YQD fastq fastq reads ENCSR724LHB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-937'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90592/'], '@type': ['Target', 'Item'], 'name': 'ZNF700-human', 'label': 'ZNF700', '@id': '/targets/ZNF700-human/', 'title': 'ZNF700 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74b1c66-3fc5-4ef6-abbf-577bf73cca2d', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF797TKU/ 1794068982 Michael Snyder, Stanford f4e18b3e3bcc2ff58e217baf95fb7ae7 https://www.encodeproject.org/files/ENCFF329YQD/@@download/ENCFF329YQD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/a445a20f-ea86-442f-a746-e2b447323cdf/ENCFF329YQD.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF653YYH bam bam unfiltered alignments GRCh38 ENCSR724LHB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-937'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90592/'], '@type': ['Target', 'Item'], 'name': 'ZNF700-human', 'label': 'ZNF700', '@id': '/targets/ZNF700-human/', 'title': 'ZNF700 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74b1c66-3fc5-4ef6-abbf-577bf73cca2d', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF329YQD/, /files/ENCFF797TKU/ 3419609164 ENCODE Processing Pipeline 66d93c248164baa4d962d33842eb6b9e https://www.encodeproject.org/files/ENCFF653YYH/@@download/ENCFF653YYH.bam released s3://encode-public/2020/04/20/a52582a0-ce78-4668-b2d8-5a2cac6fc75f/ENCFF653YYH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF688OEJ bam bam alignments GRCh38 ENCSR724LHB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-937'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/90592/'], '@type': ['Target', 'Item'], 'name': 'ZNF700-human', 'label': 'ZNF700', '@id': '/targets/ZNF700-human/', 'title': 'ZNF700 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74b1c66-3fc5-4ef6-abbf-577bf73cca2d', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF329YQD/, /files/ENCFF797TKU/ 2229915710 ENCODE Processing Pipeline 4a0e0a62c9601d1a68804ffcb7ae3120 https://www.encodeproject.org/files/ENCFF688OEJ/@@download/ENCFF688OEJ.bam released s3://encode-public/2020/04/20/c182f3bb-7372-48ee-97d2-9d40e46d1107/ENCFF688OEJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF088HMZ fastq fastq reads ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF722QTP/ 3112012420 Richard Myers, HAIB b313656ae181dfae6dafeb0c0be7f5f6 SRA:SRR6214360 https://www.encodeproject.org/files/ENCFF088HMZ/@@download/ENCFF088HMZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/90d27ea7-5e3c-43e6-bf17-d3acee18adfe/ENCFF088HMZ.fastq.gz ENCFF722QTP fastq fastq reads ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF088HMZ/ 3266076214 Richard Myers, HAIB 57810fac94c6d79727906d671c9f97f3 SRA:SRR6214360 https://www.encodeproject.org/files/ENCFF722QTP/@@download/ENCFF722QTP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/ff10cb9d-5b87-4808-8e90-1a2a63509787/ENCFF722QTP.fastq.gz ENCFF060RDQ bam bam unfiltered alignments hg19 ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF088HMZ/, /files/ENCFF807MUK/, /files/ENCFF722QTP/ 7485397887 ENCODE Processing Pipeline 4317923f5aa40f7c0f8c10c1dfb2a190 https://www.encodeproject.org/files/ENCFF060RDQ/@@download/ENCFF060RDQ.bam released s3://encode-public/2017/02/02/f88f76d5-aa8e-4910-a683-f3557024d32b/ENCFF060RDQ.bam ENCODE3 hg19 archived ENCFF852TGW bam bam alignments hg19 ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF088HMZ/, /files/ENCFF807MUK/, /files/ENCFF722QTP/ 5047018723 ENCODE Processing Pipeline af78b9f4537eec2f667dc836dbee7560 https://www.encodeproject.org/files/ENCFF852TGW/@@download/ENCFF852TGW.bam released s3://encode-public/2017/02/02/b740b572-4697-4bbb-842f-e36e51e0c605/ENCFF852TGW.bam ENCODE3 hg19 archived ENCFF461QPO bam bam unfiltered alignments GRCh38 ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF088HMZ/, /files/ENCFF643CGH/, /files/ENCFF722QTP/ 7516811723 ENCODE Processing Pipeline 9f48a5ef175afae2264af21712f659ce https://www.encodeproject.org/files/ENCFF461QPO/@@download/ENCFF461QPO.bam released s3://encode-public/2017/02/02/a3e05b32-5c97-424b-a1f3-b8f47b283b0c/ENCFF461QPO.bam ENCODE3 GRCh38 archived ENCFF434APV bam bam alignments GRCh38 ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF088HMZ/, /files/ENCFF643CGH/, /files/ENCFF722QTP/ 5052728298 ENCODE Processing Pipeline d72e482c313517524b924f930008a116 https://www.encodeproject.org/files/ENCFF434APV/@@download/ENCFF434APV.bam released s3://encode-public/2017/02/02/39d50551-6a80-4531-9744-6b34d05455d0/ENCFF434APV.bam ENCODE3 GRCh38 archived ENCFF076TMU bam bam unfiltered alignments GRCh38 ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF722QTP/, /files/ENCFF088HMZ/, /files/ENCFF110MCL/ 7624276248 ENCODE Processing Pipeline c2a1daddf50f989d6a932bb7ad71c56d https://www.encodeproject.org/files/ENCFF076TMU/@@download/ENCFF076TMU.bam released s3://encode-public/2020/10/28/69aff74f-131e-4bca-993f-7b0327cd064e/ENCFF076TMU.bam ENCODE4 v1.5.1 GRCh38 released ENCFF483SKZ bam bam alignments GRCh38 ENCSR869JUM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF722QTP/, /files/ENCFF088HMZ/, /files/ENCFF110MCL/ 4804894378 ENCODE Processing Pipeline 42d129d972b47f278de27b44dfaf5eab https://www.encodeproject.org/files/ENCFF483SKZ/@@download/ENCFF483SKZ.bam released s3://encode-public/2020/10/28/10f7766f-a385-4701-9737-a12a8b340e0c/ENCFF483SKZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF615EFD fastq fastq reads ENCSR822AWY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-985'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84671/'], '@type': ['Target', 'Item'], 'name': 'ZNF347-human', 'label': 'ZNF347', '@id': '/targets/ZNF347-human/', 'title': 'ZNF347 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7edf642a-7dbc-4d18-b8a7-a36fee801dda', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF392IRA/ 2431225540 Michael Snyder, Stanford 509345b502ddb7dc8eecb880caa05e16 https://www.encodeproject.org/files/ENCFF615EFD/@@download/ENCFF615EFD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/b18021b5-e47e-4d2b-9f3b-531a969404a5/ENCFF615EFD.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF392IRA fastq fastq reads ENCSR822AWY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-985'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84671/'], '@type': ['Target', 'Item'], 'name': 'ZNF347-human', 'label': 'ZNF347', '@id': '/targets/ZNF347-human/', 'title': 'ZNF347 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7edf642a-7dbc-4d18-b8a7-a36fee801dda', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF615EFD/ 2843762007 Michael Snyder, Stanford 9ed3f4924d280e619b55df58d1c2e5f7 https://www.encodeproject.org/files/ENCFF392IRA/@@download/ENCFF392IRA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/191f89db-78e2-4514-8632-9411c5863af8/ENCFF392IRA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF126VFS bam bam unfiltered alignments GRCh38 ENCSR822AWY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-985'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84671/'], '@type': ['Target', 'Item'], 'name': 'ZNF347-human', 'label': 'ZNF347', '@id': '/targets/ZNF347-human/', 'title': 'ZNF347 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7edf642a-7dbc-4d18-b8a7-a36fee801dda', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF615EFD/, /files/ENCFF392IRA/ 4648698904 ENCODE Processing Pipeline 93bbedfdd11961c8ab2f20d566c0fad4 https://www.encodeproject.org/files/ENCFF126VFS/@@download/ENCFF126VFS.bam released s3://encode-public/2020/04/20/9d95a27d-fcd7-4130-9349-6ac4b0eedca4/ENCFF126VFS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF689PQW bam bam alignments GRCh38 ENCSR822AWY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-985'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84671/'], '@type': ['Target', 'Item'], 'name': 'ZNF347-human', 'label': 'ZNF347', '@id': '/targets/ZNF347-human/', 'title': 'ZNF347 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7edf642a-7dbc-4d18-b8a7-a36fee801dda', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF615EFD/, /files/ENCFF392IRA/ 2700579290 ENCODE Processing Pipeline 87692afa376c3b81dd2db5c45093d75e https://www.encodeproject.org/files/ENCFF689PQW/@@download/ENCFF689PQW.bam released s3://encode-public/2020/04/20/aa58c909-5b15-4c99-bdfa-a586c1983704/ENCFF689PQW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF790SZA fastq fastq reads ENCSR710DAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-293'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7030/'], '@type': ['Target', 'Item'], 'name': 'TFE3-human', 'label': 'TFE3', '@id': '/targets/TFE3-human/', 'title': 'TFE3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1090fdea-0fec-40ef-9897-ebfd2d04cbdb', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 paired-ended 1 /files/ENCFF441XRL/ 3010919717 Michael Snyder, Stanford 3ebfdd3068fee4b4012e7f1398c3db99 https://www.encodeproject.org/files/ENCFF790SZA/@@download/ENCFF790SZA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/91754716-f7f6-4909-8b89-15df15a31231/ENCFF790SZA.fastq.gz mild to moderate bottlenecking ENCFF441XRL fastq fastq reads ENCSR710DAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-293'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7030/'], '@type': ['Target', 'Item'], 'name': 'TFE3-human', 'label': 'TFE3', '@id': '/targets/TFE3-human/', 'title': 'TFE3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1090fdea-0fec-40ef-9897-ebfd2d04cbdb', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 paired-ended 2 /files/ENCFF790SZA/ 3612881755 Michael Snyder, Stanford b5f8a18a1a4e548f572ae63ca873a73f https://www.encodeproject.org/files/ENCFF441XRL/@@download/ENCFF441XRL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/81071a51-147b-4f8e-9ece-7e11604993a9/ENCFF441XRL.fastq.gz mild to moderate bottlenecking ENCFF070GDP bam bam alignments GRCh38 ENCSR710DAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-293'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7030/'], '@type': ['Target', 'Item'], 'name': 'TFE3-human', 'label': 'TFE3', '@id': '/targets/TFE3-human/', 'title': 'TFE3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1090fdea-0fec-40ef-9897-ebfd2d04cbdb', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 /files/ENCFF110MCL/, /files/ENCFF790SZA/, /files/ENCFF441XRL/ 3684210190 ENCODE Processing Pipeline 188c27d5628f8fa44812881238ce567a https://www.encodeproject.org/files/ENCFF070GDP/@@download/ENCFF070GDP.bam released s3://encode-public/2020/04/20/1ad612cf-371d-4da7-8b53-96deb249ac01/ENCFF070GDP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF812BFU bam bam unfiltered alignments GRCh38 ENCSR710DAJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-293'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7030/'], '@type': ['Target', 'Item'], 'name': 'TFE3-human', 'label': 'TFE3', '@id': '/targets/TFE3-human/', 'title': 'TFE3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1090fdea-0fec-40ef-9897-ebfd2d04cbdb', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 151 /files/ENCFF110MCL/, /files/ENCFF790SZA/, /files/ENCFF441XRL/ 6106115609 ENCODE Processing Pipeline 60f474c44db67c3ece081b3ccb331f8b https://www.encodeproject.org/files/ENCFF812BFU/@@download/ENCFF812BFU.bam released s3://encode-public/2020/04/20/9e846bd5-6e20-442c-b31d-752319187d4a/ENCFF812BFU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF172SXB fastq fastq reads ENCSR019ZGX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 single-ended 2833476958 Richard Myers, HAIB b66e89d83e36fb19d2c0e87d5748c870 SRA:SRR14103205 https://www.encodeproject.org/files/ENCFF172SXB/@@download/ENCFF172SXB.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/05/27/10352e85-0d1a-4f4f-be88-c0f22996c349/ENCFF172SXB.fastq.gz ENCFF217XDO bam bam unfiltered alignments GRCh38 ENCSR019ZGX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF172SXB/ 2623172941 ENCODE Processing Pipeline 709d210255a153cb0a3dad261c0f13d3 https://www.encodeproject.org/files/ENCFF217XDO/@@download/ENCFF217XDO.bam released s3://encode-public/2020/08/12/58498780-fda3-4174-bf3b-1e3252d9dccd/ENCFF217XDO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF016WME bam bam alignments GRCh38 ENCSR019ZGX Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF172SXB/ 1203502461 ENCODE Processing Pipeline d3ccce3f066eb6f8e4262ee68764895e https://www.encodeproject.org/files/ENCFF016WME/@@download/ENCFF016WME.bam released s3://encode-public/2020/08/12/d219b6b9-05b5-4e2a-befe-ace254dfeae3/ENCFF016WME.bam ENCODE4 v1.5.1 GRCh38 released ENCFF587UAW fastq fastq reads ENCSR328FYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF766LCF/ 2261104275 Michael Snyder, Stanford e2699a4bbcb8b537f024a36adafcf52b SRA:SRR14105224 https://www.encodeproject.org/files/ENCFF587UAW/@@download/ENCFF587UAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/4f6d5850-7fa0-4088-aaf3-bdaff2cb436f/ENCFF587UAW.fastq.gz ENCFF766LCF fastq fastq reads ENCSR328FYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF587UAW/ 1985771398 Michael Snyder, Stanford 1d4aa31a32b3e30413c8d137d6b9e5d2 SRA:SRR14105224 https://www.encodeproject.org/files/ENCFF766LCF/@@download/ENCFF766LCF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/79926b69-2e52-4a9c-8c4e-eebe3d59556a/ENCFF766LCF.fastq.gz ENCFF174OKT bam bam alignments GRCh38 ENCSR328FYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF766LCF/, /files/ENCFF587UAW/ 3680498563 ENCODE Processing Pipeline 216f57b37fc735537a0edbf4b30ddcdb https://www.encodeproject.org/files/ENCFF174OKT/@@download/ENCFF174OKT.bam released s3://encode-public/2020/04/20/eff3b221-ecff-4e27-9360-5022bbcb1c94/ENCFF174OKT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF563LJM bam bam unfiltered alignments GRCh38 ENCSR328FYU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF766LCF/, /files/ENCFF587UAW/ 4482517259 ENCODE Processing Pipeline f9b12458a801daf80e6a5ed662484509 https://www.encodeproject.org/files/ENCFF563LJM/@@download/ENCFF563LJM.bam released s3://encode-public/2020/04/20/7f17c4cc-60f2-4c1b-baea-5091913eaed6/ENCFF563LJM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF534FKH fastq fastq reads ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF573BIK/ 1741790422 Richard Myers, HAIB 1216176f15ef1f38aa4848c14f9f313d SRA:SRR6213983 https://www.encodeproject.org/files/ENCFF534FKH/@@download/ENCFF534FKH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/a9345176-250b-4262-894c-8dcf517df7b3/ENCFF534FKH.fastq.gz ENCFF573BIK fastq fastq reads ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF534FKH/ 1779286594 Richard Myers, HAIB a3323607c9503104db1f058b4c221ea2 SRA:SRR6213983 https://www.encodeproject.org/files/ENCFF573BIK/@@download/ENCFF573BIK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/54043038-95b0-4af6-94ed-cd05f6b0d164/ENCFF573BIK.fastq.gz ENCFF424BTN bam bam unfiltered alignments GRCh38 ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF573BIK/, /files/ENCFF643CGH/, /files/ENCFF534FKH/ 4343224710 ENCODE Processing Pipeline cca4ced76058251de76b66569bf2a528 https://www.encodeproject.org/files/ENCFF424BTN/@@download/ENCFF424BTN.bam released s3://encode-public/2017/02/02/eedead3e-e75f-4c58-97d9-d5d7bef1a39f/ENCFF424BTN.bam ENCODE3 GRCh38 archived ENCFF608GWQ bam bam unfiltered alignments hg19 ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF573BIK/, /files/ENCFF807MUK/, /files/ENCFF534FKH/ 4322621951 ENCODE Processing Pipeline 81595d686a9613b370e94ffece11ec2a https://www.encodeproject.org/files/ENCFF608GWQ/@@download/ENCFF608GWQ.bam released s3://encode-public/2017/02/02/d3fee15a-93bb-49c1-9443-f24f23e72b1d/ENCFF608GWQ.bam ENCODE3 hg19 archived ENCFF046CQF bam bam alignments GRCh38 ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF573BIK/, /files/ENCFF643CGH/, /files/ENCFF534FKH/ 2974259450 ENCODE Processing Pipeline 07a5cf65eee570d544746ad585d07a69 https://www.encodeproject.org/files/ENCFF046CQF/@@download/ENCFF046CQF.bam released s3://encode-public/2017/02/02/51cfbe66-915f-49d2-b4a1-0ba57c437d43/ENCFF046CQF.bam ENCODE3 GRCh38 archived ENCFF013XJQ bam bam alignments hg19 ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF573BIK/, /files/ENCFF807MUK/, /files/ENCFF534FKH/ 2971606985 ENCODE Processing Pipeline 2c8a8c33e615a7024ecde4fb4af2991e https://www.encodeproject.org/files/ENCFF013XJQ/@@download/ENCFF013XJQ.bam released s3://encode-public/2017/02/02/44bb7df3-d90e-4da3-9d79-5306442f41bc/ENCFF013XJQ.bam ENCODE3 hg19 archived ENCFF584IVZ bam bam unfiltered alignments GRCh38 ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF534FKH/, /files/ENCFF573BIK/ 4387889523 ENCODE Processing Pipeline c30dd4e7051a3b9e74fce8213d64ac68 https://www.encodeproject.org/files/ENCFF584IVZ/@@download/ENCFF584IVZ.bam released s3://encode-public/2020/10/28/55f71e69-4d85-4bed-b982-cc01d1946b3d/ENCFF584IVZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF016LNG bam bam alignments GRCh38 ENCSR915TAF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF534FKH/, /files/ENCFF573BIK/ 2798692881 ENCODE Processing Pipeline 716eec4e93d0b81a0230192c31bd6a22 https://www.encodeproject.org/files/ENCFF016LNG/@@download/ENCFF016LNG.bam released s3://encode-public/2020/10/28/bfd8b143-aac9-4152-8b8b-834ca21c3edd/ENCFF016LNG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF480VTB fastq fastq reads ENCSR532KDW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7003/'], '@type': ['Target', 'Item'], 'name': 'TEAD1-human', 'label': 'TEAD1', '@id': '/targets/TEAD1-human/', 'title': 'TEAD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8a929742-012b-441c-a1b0-3dfaa7d78ef7', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF658OOQ/ 2397992969 Michael Snyder, Stanford c576e31e1010d67fdfbd63fb93ed2794 SRA:SRR14105532 https://www.encodeproject.org/files/ENCFF480VTB/@@download/ENCFF480VTB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/5adc72d1-7838-4697-8233-d34e89e0acbd/ENCFF480VTB.fastq.gz mild to moderate bottlenecking ENCFF658OOQ fastq fastq reads ENCSR532KDW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7003/'], '@type': ['Target', 'Item'], 'name': 'TEAD1-human', 'label': 'TEAD1', '@id': '/targets/TEAD1-human/', 'title': 'TEAD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8a929742-012b-441c-a1b0-3dfaa7d78ef7', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF480VTB/ 2636113082 Michael Snyder, Stanford a10d295dae347b33182413f85e1d4262 SRA:SRR14105532 https://www.encodeproject.org/files/ENCFF658OOQ/@@download/ENCFF658OOQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/da594486-f95c-4c79-8a0f-c89ac8a430be/ENCFF658OOQ.fastq.gz mild to moderate bottlenecking ENCFF215EWX bam bam alignments GRCh38 ENCSR532KDW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7003/'], '@type': ['Target', 'Item'], 'name': 'TEAD1-human', 'label': 'TEAD1', '@id': '/targets/TEAD1-human/', 'title': 'TEAD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8a929742-012b-441c-a1b0-3dfaa7d78ef7', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF480VTB/, /files/ENCFF658OOQ/ 3597327078 ENCODE Processing Pipeline 2d360ec991259dd29d2858c3365cea03 https://www.encodeproject.org/files/ENCFF215EWX/@@download/ENCFF215EWX.bam released s3://encode-public/2020/04/20/220f08c7-a688-4500-b89f-fcc9d1c8efe0/ENCFF215EWX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF279EDA bam bam unfiltered alignments GRCh38 ENCSR532KDW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7003/'], '@type': ['Target', 'Item'], 'name': 'TEAD1-human', 'label': 'TEAD1', '@id': '/targets/TEAD1-human/', 'title': 'TEAD1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8a929742-012b-441c-a1b0-3dfaa7d78ef7', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF480VTB/, /files/ENCFF658OOQ/ 4884148002 ENCODE Processing Pipeline 116406b60d662df3e233fe7d7e6abbeb https://www.encodeproject.org/files/ENCFF279EDA/@@download/ENCFF279EDA.bam released s3://encode-public/2020/04/20/f0b221ce-ce9f-4b93-ba59-41ca351b48ba/ENCFF279EDA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF972VPI fastq fastq reads ENCSR343BAV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-918'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/92595/'], '@type': ['Target', 'Item'], 'name': 'ZNF764-human', 'label': 'ZNF764', '@id': '/targets/ZNF764-human/', 'title': 'ZNF764 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c13955ab-57e7-4de9-be53-c4d41a884be4', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF154TUA/ 2392475851 Michael Snyder, Stanford 38bb469fb1782559d51e86b160bc9df9 https://www.encodeproject.org/files/ENCFF972VPI/@@download/ENCFF972VPI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/9ce1c5b9-6bb6-4fd8-acd9-9b5c833b2ee8/ENCFF972VPI.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF154TUA fastq fastq reads ENCSR343BAV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-918'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/92595/'], '@type': ['Target', 'Item'], 'name': 'ZNF764-human', 'label': 'ZNF764', '@id': '/targets/ZNF764-human/', 'title': 'ZNF764 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c13955ab-57e7-4de9-be53-c4d41a884be4', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF972VPI/ 2198716995 Michael Snyder, Stanford 2c8cb50427745fa7e6512e4565cf2390 https://www.encodeproject.org/files/ENCFF154TUA/@@download/ENCFF154TUA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/d49c6a00-f04e-42ba-a8cd-c6814af23e7a/ENCFF154TUA.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF245RVK bam bam unfiltered alignments GRCh38 ENCSR343BAV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-918'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/92595/'], '@type': ['Target', 'Item'], 'name': 'ZNF764-human', 'label': 'ZNF764', '@id': '/targets/ZNF764-human/', 'title': 'ZNF764 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c13955ab-57e7-4de9-be53-c4d41a884be4', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF154TUA/, /files/ENCFF972VPI/ 3795070701 ENCODE Processing Pipeline 33b5a4e728e19c17a3a6df989a142c4a https://www.encodeproject.org/files/ENCFF245RVK/@@download/ENCFF245RVK.bam released s3://encode-public/2020/05/15/03093672-03b0-4827-a120-3e362faec831/ENCFF245RVK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF658BLS bam bam alignments GRCh38 ENCSR343BAV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-918'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/92595/'], '@type': ['Target', 'Item'], 'name': 'ZNF764-human', 'label': 'ZNF764', '@id': '/targets/ZNF764-human/', 'title': 'ZNF764 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c13955ab-57e7-4de9-be53-c4d41a884be4', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF154TUA/, /files/ENCFF972VPI/ 2204546641 ENCODE Processing Pipeline b3054dce32cc2978961f7e4ed104c109 https://www.encodeproject.org/files/ENCFF658BLS/@@download/ENCFF658BLS.bam released s3://encode-public/2020/05/15/0d5e8f7d-c6d5-4973-b872-fe9a2cce1833/ENCFF658BLS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF527OHP fastq fastq reads ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF502WHI/ 2115416194 Richard Myers, HAIB 2bee3824d56b174c0ea798cea5b4e82a SRA:SRR8660401 https://www.encodeproject.org/files/ENCFF527OHP/@@download/ENCFF527OHP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/20faaa5f-579f-4e63-bc38-b620d4285f75/ENCFF527OHP.fastq.gz ENCFF502WHI fastq fastq reads ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF527OHP/ 2081805418 Richard Myers, HAIB 87c2168f4b28b907ccbf7da1a1fdf04a SRA:SRR8660401 https://www.encodeproject.org/files/ENCFF502WHI/@@download/ENCFF502WHI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/35c8caa8-6aa7-412c-bf8d-4d38a843c74b/ENCFF502WHI.fastq.gz ENCFF502UZJ bam bam unfiltered alignments hg19 ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF527OHP/, /files/ENCFF807MUK/, /files/ENCFF502WHI/ 5115513727 ENCODE Processing Pipeline 1ef676220569e3d4c116610c78a1412a https://www.encodeproject.org/files/ENCFF502UZJ/@@download/ENCFF502UZJ.bam released s3://encode-public/2017/02/02/472683da-66db-49c9-b9b9-17c484d397f8/ENCFF502UZJ.bam ENCODE3 hg19 archived ENCFF768NBN bam bam alignments hg19 ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF527OHP/, /files/ENCFF807MUK/, /files/ENCFF502WHI/ 3633021876 ENCODE Processing Pipeline b1e45f88bedce5cb34741c3c41c80051 https://www.encodeproject.org/files/ENCFF768NBN/@@download/ENCFF768NBN.bam released s3://encode-public/2017/02/02/a018275f-c116-49d8-a45b-a9b1c3b5351a/ENCFF768NBN.bam ENCODE3 hg19 archived ENCFF669LRK bam bam unfiltered alignments GRCh38 ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF527OHP/, /files/ENCFF643CGH/, /files/ENCFF502WHI/ 5140899086 ENCODE Processing Pipeline c056f8b80c78b6adf31edbccd5830c29 https://www.encodeproject.org/files/ENCFF669LRK/@@download/ENCFF669LRK.bam released s3://encode-public/2017/02/02/58ec25ef-7f28-4e15-a6dc-b44911f1eac5/ENCFF669LRK.bam ENCODE3 GRCh38 archived ENCFF511XEA bam bam alignments GRCh38 ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF527OHP/, /files/ENCFF643CGH/, /files/ENCFF502WHI/ 3639345537 ENCODE Processing Pipeline 3a1a60bd7f0ead95cdc5f55adce475f8 https://www.encodeproject.org/files/ENCFF511XEA/@@download/ENCFF511XEA.bam released s3://encode-public/2017/02/02/f97efef8-067d-471b-96a1-414f4dbf5d50/ENCFF511XEA.bam ENCODE3 GRCh38 archived ENCFF459SHD bam bam unfiltered alignments GRCh38 ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF502WHI/, /files/ENCFF527OHP/ 5150964998 ENCODE Processing Pipeline b6d52e988b9dc281c1393c57c29d1809 https://www.encodeproject.org/files/ENCFF459SHD/@@download/ENCFF459SHD.bam released s3://encode-public/2020/06/06/c3011ce0-45ff-4cc8-bf26-b30cdf31ffcc/ENCFF459SHD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF487RYB bam bam alignments GRCh38 ENCSR467CRM Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF502WHI/, /files/ENCFF527OHP/ 3428291796 ENCODE Processing Pipeline 8ea2694f4fd45e9ef0265b73586cac5e https://www.encodeproject.org/files/ENCFF487RYB/@@download/ENCFF487RYB.bam released s3://encode-public/2020/06/06/89ccba4e-6b10-4385-a7e1-5bf72f7d02e9/ENCFF487RYB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF078QNG bam bam alignments hg19 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF795IME/ 426275445 Vishwanath Iyer, UTA 0b94ffba0b6a6744f8adbc9fd95c8755 https://www.encodeproject.org/files/ENCFF078QNG/@@download/ENCFF078QNG.bam archived s3://encode-public/2016/06/23/7db577a1-0725-4c0e-b61a-8ab03935e69a/ENCFF078QNG.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF963LOW fastq fastq reads ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 single-ended 530652387 Vishwanath Iyer, UTA 0caafa43a528fd5ea0dc666150c9e556 https://www.encodeproject.org/files/ENCFF963LOW/@@download/ENCFF963LOW.fastq.gz Illumina Genome Analyzer released s3://encode-public/2016/06/23/32a92092-95fa-4904-a63c-97e66c849d95/ENCFF963LOW.fastq.gz mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF133JNO bam bam alignments hg19 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF963LOW/ 807317196 Vishwanath Iyer, UTA ea717a74b479f7a2f69fb2718f66a73a https://www.encodeproject.org/files/ENCFF133JNO/@@download/ENCFF133JNO.bam archived s3://encode-public/2016/06/23/2582ab96-d75c-4dd7-a253-01416ba8fcb9/ENCFF133JNO.bam Lab custom hg19 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF795IME fastq fastq reads ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 single-ended 278681751 Vishwanath Iyer, UTA 9bf9703b8baf9f2d9930cdbb388ad7bb https://www.encodeproject.org/files/ENCFF795IME/@@download/ENCFF795IME.fastq.gz Illumina Genome Analyzer released s3://encode-public/2016/06/23/f0a0a183-0e73-4ef5-8578-02b3986c3b0a/ENCFF795IME.fastq.gz mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF828BJB bam bam unfiltered alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF795IME/ 392021906 ENCODE Processing Pipeline 62de9ad149b38031210797ac12dab9e3 https://www.encodeproject.org/files/ENCFF828BJB/@@download/ENCFF828BJB.bam released s3://encode-public/2016/10/26/fd0bc119-3c5e-4ce0-9750-6891d808f3f9/ENCFF828BJB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF367KJP bam bam unfiltered alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF963LOW/ 720953398 ENCODE Processing Pipeline 0dd64a4f9d45be35e75d90f291a4c3d3 https://www.encodeproject.org/files/ENCFF367KJP/@@download/ENCFF367KJP.bam released s3://encode-public/2016/10/26/f045edb3-4143-4cf7-9f68-c2b0e9e67ae6/ENCFF367KJP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF381ASB bam bam alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF795IME/ 211012712 ENCODE Processing Pipeline 98eebb5882e83444b111d273093db516 https://www.encodeproject.org/files/ENCFF381ASB/@@download/ENCFF381ASB.bam released s3://encode-public/2016/10/26/5939b33b-be5b-4465-85ed-e9b4d6485e38/ENCFF381ASB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF047RYQ bam bam alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF963LOW/ 371568981 ENCODE Processing Pipeline fdc2f5ca14f22fbfd8af4e76ae013385 https://www.encodeproject.org/files/ENCFF047RYQ/@@download/ENCFF047RYQ.bam released s3://encode-public/2016/10/26/7c4d363f-7757-43d3-b1de-0716eae001c4/ENCFF047RYQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF913ADE bam bam unfiltered alignments hg19 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF795IME/ 391426152 ENCODE Processing Pipeline 6097ee671020155d7046b0c2e9f5c946 https://www.encodeproject.org/files/ENCFF913ADE/@@download/ENCFF913ADE.bam released s3://encode-public/2017/07/04/20bf4298-1c9a-4f38-93f0-5d1560ef39d8/ENCFF913ADE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF199MPO bam bam alignments hg19 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF795IME/ 211256596 ENCODE Processing Pipeline f7fcc3f294030847bd9aaed0812e1b4d https://www.encodeproject.org/files/ENCFF199MPO/@@download/ENCFF199MPO.bam released s3://encode-public/2017/07/04/09140fea-6d60-409a-9edb-2ed706366161/ENCFF199MPO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF823OET bam bam alignments hg19 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF963LOW/ 371869650 ENCODE Processing Pipeline 1c6e572e106c0ec0046a0e5b3aa0444b https://www.encodeproject.org/files/ENCFF823OET/@@download/ENCFF823OET.bam released s3://encode-public/2017/07/04/0cf14be7-ec18-4b32-960f-5b146ebdc19c/ENCFF823OET.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF310OBC bam bam unfiltered alignments hg19 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF963LOW/ 720105061 ENCODE Processing Pipeline ed80ca5e8cfa5983162d5e9d798518f6 https://www.encodeproject.org/files/ENCFF310OBC/@@download/ENCFF310OBC.bam released s3://encode-public/2017/07/04/b8754dce-7648-4508-8c02-b603663556d3/ENCFF310OBC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF285SAL bam bam unfiltered alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF795IME/ 374848206 ENCODE Processing Pipeline 1fa073dfcab61f8da0a0c51abd041dbc https://www.encodeproject.org/files/ENCFF285SAL/@@download/ENCFF285SAL.bam released s3://encode-public/2020/09/03/39344b91-2008-404d-890f-bfe4a5c3b792/ENCFF285SAL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF926VXK bam bam unfiltered alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF963LOW/ 690245592 ENCODE Processing Pipeline 9fd36e8eb5dc7590ca865b058709c929 https://www.encodeproject.org/files/ENCFF926VXK/@@download/ENCFF926VXK.bam released s3://encode-public/2020/09/03/bca5326d-bc1e-4a7c-b085-0f92913b3a79/ENCFF926VXK.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF376MST bam bam alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF795IME/ 239384954 ENCODE Processing Pipeline 2af8b514afbbcac48e9e8ac09bcc75cb https://www.encodeproject.org/files/ENCFF376MST/@@download/ENCFF376MST.bam released s3://encode-public/2020/09/03/da4e60c7-19fd-41ac-b4d1-8e3402d28197/ENCFF376MST.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF856UFA bam bam alignments GRCh38 ENCSR704AQC Control ChIP-seq /human-donors/ENCDO000AAW/ EFO:0003042 H1 cell line Homo sapiens DNA 2016-06-28 ENCODE 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF963LOW/ 425176477 ENCODE Processing Pipeline 096225853870ac61cece70cc76d20aa3 https://www.encodeproject.org/files/ENCFF856UFA/@@download/ENCFF856UFA.bam released s3://encode-public/2020/09/03/dfb13aac-33f3-4218-9911-f4652c5a4cd7/ENCFF856UFA.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth extremely low read depth ENCFF993NNW fastq fastq reads ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 1367629536 Bradley Bernstein, Broad 52accddff9bfc67b71ede5b868551010 SRA:SRR10388973 https://www.encodeproject.org/files/ENCFF993NNW/@@download/ENCFF993NNW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/836b5255-967f-4945-b907-5cbdfefe31aa/ENCFF993NNW.fastq.gz ENCFF842XBI fastq fastq reads ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1 76 single-ended 1433627000 Bradley Bernstein, Broad ae62d1f24be91ac7f32f52d488e38511 SRA:SRR10388974 https://www.encodeproject.org/files/ENCFF842XBI/@@download/ENCFF842XBI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/cfd40301-f132-4602-8089-fa7763e97f8f/ENCFF842XBI.fastq.gz ENCFF697IXE fastq fastq reads ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1247990013 Bradley Bernstein, Broad 2020e9d477367f45b656102a445af601 SRA:SRR10388971 https://www.encodeproject.org/files/ENCFF697IXE/@@download/ENCFF697IXE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/dd55d021-4383-4673-b938-0899f3d5ba27/ENCFF697IXE.fastq.gz ENCFF817JIA fastq fastq reads ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_2 76 single-ended 1177689235 Bradley Bernstein, Broad a4df0a71b4f691c28e5807ec9df37c29 SRA:SRR10388972 https://www.encodeproject.org/files/ENCFF817JIA/@@download/ENCFF817JIA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/12c2dac2-618b-47b5-9d89-abf6bed40ac8/ENCFF817JIA.fastq.gz ENCFF635IGD bam bam unfiltered alignments GRCh38 ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF697IXE/, /files/ENCFF842XBI/, /files/ENCFF993NNW/, /files/ENCFF643CGH/, /files/ENCFF817JIA/ 5019698927 ENCODE Processing Pipeline 70ce50c04f66017183364acd3d7c1bfb https://www.encodeproject.org/files/ENCFF635IGD/@@download/ENCFF635IGD.bam released s3://encode-public/2019/08/11/7442afd0-5b12-4556-ad28-e4a8e14bd818/ENCFF635IGD.bam ENCODE3 GRCh38 archived ENCFF066VCK bam bam unfiltered alignments hg19 ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF697IXE/, /files/ENCFF842XBI/, /files/ENCFF993NNW/, /files/ENCFF817JIA/ 5005117831 ENCODE Processing Pipeline cfdb78da1ca66dcc83ade774ea0fe46f https://www.encodeproject.org/files/ENCFF066VCK/@@download/ENCFF066VCK.bam released s3://encode-public/2019/08/11/42c08e07-d623-49ce-87df-117763a9bd3b/ENCFF066VCK.bam ENCODE3 hg19 archived ENCFF480TEY bam bam alignments GRCh38 ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF697IXE/, /files/ENCFF842XBI/, /files/ENCFF993NNW/, /files/ENCFF643CGH/, /files/ENCFF817JIA/ 4211141147 ENCODE Processing Pipeline c56fa0a3cd692c27042926c89426fc95 https://www.encodeproject.org/files/ENCFF480TEY/@@download/ENCFF480TEY.bam released s3://encode-public/2019/08/11/bb7262d1-e5ac-47e8-bb4d-5a9b9240198a/ENCFF480TEY.bam ENCODE3 GRCh38 archived ENCFF568XAM bam bam alignments hg19 ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF697IXE/, /files/ENCFF842XBI/, /files/ENCFF993NNW/, /files/ENCFF817JIA/ 4205740708 ENCODE Processing Pipeline b700538f17b411acda985926776ba178 https://www.encodeproject.org/files/ENCFF568XAM/@@download/ENCFF568XAM.bam released s3://encode-public/2019/08/11/a0f1a25a-b4bc-460c-9778-ccaf918e52b8/ENCFF568XAM.bam ENCODE3 hg19 archived ENCFF237WGV bam bam unfiltered alignments GRCh38 ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF842XBI/, /files/ENCFF817JIA/, /files/ENCFF993NNW/, /files/ENCFF697IXE/, /files/ENCFF110MCL/ 4999405294 ENCODE Processing Pipeline 320224a21c808e8675bfeccd95643d40 https://www.encodeproject.org/files/ENCFF237WGV/@@download/ENCFF237WGV.bam released s3://encode-public/2020/09/19/8573f7f8-40a4-4456-8829-fea76ef263ac/ENCFF237WGV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF998HJS bam bam alignments GRCh38 ENCSR980TBV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2019-09-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF842XBI/, /files/ENCFF817JIA/, /files/ENCFF993NNW/, /files/ENCFF697IXE/, /files/ENCFF110MCL/ 4181693819 ENCODE Processing Pipeline 49be3e0660ecda3a0d812a999be2b662 https://www.encodeproject.org/files/ENCFF998HJS/@@download/ENCFF998HJS.bam released s3://encode-public/2020/09/19/81c01db6-e618-448a-aae5-b96f24ecfd25/ENCFF998HJS.bam ENCODE4 v1.5.1 GRCh38 released ENCFF297YQY fastq fastq reads ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 single-ended 2021933038 Bradley Bernstein, Broad a4a9e4a2ed0875ea8d49e4b76e299275 SRA:SRR5339308 https://www.encodeproject.org/files/ENCFF297YQY/@@download/ENCFF297YQY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/03/22/baec88d6-77e3-4b63-be0d-678cbb415089/ENCFF297YQY.fastq.gz ENCFF464KVS bam bam alignments GRCh38 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF643CGH/ 2028531290 ENCODE Processing Pipeline 115478aaca3450e8923a74a6db7cc8d3 https://www.encodeproject.org/files/ENCFF464KVS/@@download/ENCFF464KVS.bam archived s3://encode-public/2016/04/23/b95d991e-10a8-4f24-9c92-6144b3896da2/ENCFF464KVS.bam ENCODE3 GRCh38 archived ENCFF073TSZ bam bam unfiltered alignments GRCh38 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF643CGH/ 2430182710 ENCODE Processing Pipeline 2eac12578b1e81bfcd40be0f9423ccb6 https://www.encodeproject.org/files/ENCFF073TSZ/@@download/ENCFF073TSZ.bam archived s3://encode-public/2016/05/05/7253ba3c-305f-4aa2-9723-d709349e0b44/ENCFF073TSZ.bam ENCODE3 GRCh38 archived ENCFF025JZF bam bam unfiltered alignments hg19 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF807MUK/ 2423602483 ENCODE Processing Pipeline b74c964f295bf979715920f63b55aa7a https://www.encodeproject.org/files/ENCFF025JZF/@@download/ENCFF025JZF.bam released s3://encode-public/2016/10/26/e27fd829-1ad6-467e-820d-466ed5340241/ENCFF025JZF.bam ENCODE3 hg19 archived ENCFF442YKA bam bam alignments hg19 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF807MUK/ 2025506045 ENCODE Processing Pipeline 6b0f0265d6f88e6adfd67a832d6af672 https://www.encodeproject.org/files/ENCFF442YKA/@@download/ENCFF442YKA.bam released s3://encode-public/2016/10/26/593a4fa9-7599-4963-bf13-5c2dfae0550c/ENCFF442YKA.bam ENCODE3 hg19 archived ENCFF566OIS bam bam unfiltered alignments GRCh38 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF643CGH/ 2430182746 ENCODE Processing Pipeline 351236f9140a3d1a7ae20d6b8e181a30 https://www.encodeproject.org/files/ENCFF566OIS/@@download/ENCFF566OIS.bam released s3://encode-public/2019/08/30/d2572aa3-030e-465d-b5f5-5d7169e64efe/ENCFF566OIS.bam ENCODE3 GRCh38 archived ENCFF281TXN bam bam alignments GRCh38 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF643CGH/ 2028531326 ENCODE Processing Pipeline 0aaffed087d66b5b4636f62500f57746 https://www.encodeproject.org/files/ENCFF281TXN/@@download/ENCFF281TXN.bam released s3://encode-public/2019/08/30/7048ab39-5477-4aea-970e-7375ca19f2dd/ENCFF281TXN.bam ENCODE3 GRCh38 archived ENCFF319WVX bam bam alignments GRCh38 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF110MCL/ 2074087002 ENCODE Processing Pipeline d5cf818680848b1b3f5abde356a1cbce https://www.encodeproject.org/files/ENCFF319WVX/@@download/ENCFF319WVX.bam released s3://encode-public/2020/08/20/81541da1-a6db-4b03-ab96-6e06efab347d/ENCFF319WVX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF336VVV bam bam unfiltered alignments GRCh38 ENCSR777VQP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-05-23 ENCODE 200-600 1 1_1 76 /files/ENCFF297YQY/, /files/ENCFF110MCL/ 2459473978 ENCODE Processing Pipeline 38313b3e1b26e46887f41c9d3ed1114a https://www.encodeproject.org/files/ENCFF336VVV/@@download/ENCFF336VVV.bam released s3://encode-public/2020/08/20/893a1b24-516d-46e5-91ab-0d6d4ce2d4ea/ENCFF336VVV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF269BZN fastq fastq reads ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF154FXE/ 2362564136 Michael Snyder, Stanford 983a731653934971f71c8d6ca68fac31 SRA:SRR6213612 https://www.encodeproject.org/files/ENCFF269BZN/@@download/ENCFF269BZN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/9d09799d-0dfa-4ae7-b9b4-623e2fdde826/ENCFF269BZN.fastq.gz mild to moderate bottlenecking ENCFF154FXE fastq fastq reads ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF269BZN/ 2870818159 Michael Snyder, Stanford 515be0f64f3a15ffbe920df1fdd64f69 SRA:SRR6213612 https://www.encodeproject.org/files/ENCFF154FXE/@@download/ENCFF154FXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/975ff015-f308-44d4-991b-4ba73ea9ef21/ENCFF154FXE.fastq.gz mild to moderate bottlenecking ENCFF497MDA bam bam unfiltered alignments hg19 ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF269BZN/, /files/ENCFF807MUK/, /files/ENCFF154FXE/ 5116909922 ENCODE Processing Pipeline 150400cb03c8b25bdae58e657245f9ae https://www.encodeproject.org/files/ENCFF497MDA/@@download/ENCFF497MDA.bam released s3://encode-public/2017/03/23/37b288ec-1c3e-4a28-a3f2-764f873e3a10/ENCFF497MDA.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF787VGS bam bam alignments GRCh38 ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF269BZN/, /files/ENCFF643CGH/, /files/ENCFF154FXE/ 3862222436 ENCODE Processing Pipeline d81f414e8cdd62d63b642d42e1664b51 https://www.encodeproject.org/files/ENCFF787VGS/@@download/ENCFF787VGS.bam released s3://encode-public/2017/03/23/8ee362be-c8db-4162-be8b-79ca0a938fe9/ENCFF787VGS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF304OGW bam bam alignments hg19 ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF269BZN/, /files/ENCFF807MUK/, /files/ENCFF154FXE/ 3856992813 ENCODE Processing Pipeline 2150553b785a65dd093b1fc0ae1c8626 https://www.encodeproject.org/files/ENCFF304OGW/@@download/ENCFF304OGW.bam released s3://encode-public/2017/03/23/8fae1df8-f1d2-4699-afb4-8ba7b0b24583/ENCFF304OGW.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF613SFY bam bam unfiltered alignments GRCh38 ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF269BZN/, /files/ENCFF643CGH/, /files/ENCFF154FXE/ 5125625020 ENCODE Processing Pipeline 2a2eb94215c1bf6e63e308ec64f8b6c5 https://www.encodeproject.org/files/ENCFF613SFY/@@download/ENCFF613SFY.bam released s3://encode-public/2017/03/23/ee5b5c9e-9128-4f72-8bad-856f6f90c2e8/ENCFF613SFY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF880HAP bam bam unfiltered alignments GRCh38 ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF269BZN/, /files/ENCFF154FXE/ 5113566457 ENCODE Processing Pipeline 2b33beedca85b23cc3c21a6459ae9422 https://www.encodeproject.org/files/ENCFF880HAP/@@download/ENCFF880HAP.bam released s3://encode-public/2020/06/02/d4c2ba16-2b53-45df-a926-09be5f1ed700/ENCFF880HAP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF712EEO bam bam alignments GRCh38 ENCSR522PLW Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF269BZN/, /files/ENCFF154FXE/ 3812437349 ENCODE Processing Pipeline 481b7eaa22bc7b4bfc26c3f136765c60 https://www.encodeproject.org/files/ENCFF712EEO/@@download/ENCFF712EEO.bam released s3://encode-public/2020/06/02/b97cfe87-0bd9-4dbd-a3cb-5a757f0f7ce7/ENCFF712EEO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF622QAG fastq fastq reads ENCSR422KXZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF981NOD/ 2312314834 Michael Snyder, Stanford 74411a8511c64dbb2a899c9265fae1f6 SRA:SRR14103331 https://www.encodeproject.org/files/ENCFF622QAG/@@download/ENCFF622QAG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/8427ffac-cc42-419c-a994-db1f4360a64f/ENCFF622QAG.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF981NOD fastq fastq reads ENCSR422KXZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF622QAG/ 2562926911 Michael Snyder, Stanford 05d64adccff52af9646c13e3744d6f99 SRA:SRR14103331 https://www.encodeproject.org/files/ENCFF981NOD/@@download/ENCFF981NOD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/6e618289-c2eb-4d2f-972e-8f9cb069af09/ENCFF981NOD.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF931HKR bam bam unfiltered alignments GRCh38 ENCSR422KXZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF622QAG/, /files/ENCFF981NOD/ 4395947340 ENCODE Processing Pipeline 635df6221e91284a40c67b58f3890976 https://www.encodeproject.org/files/ENCFF931HKR/@@download/ENCFF931HKR.bam released s3://encode-public/2020/04/20/a57eca39-ec11-42ea-aa5f-f5c2f36b4be2/ENCFF931HKR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF222VAQ bam bam alignments GRCh38 ENCSR422KXZ Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF622QAG/, /files/ENCFF981NOD/ 3106599368 ENCODE Processing Pipeline 1c2ba9379a23bc3d535a5119ed7e2f88 https://www.encodeproject.org/files/ENCFF222VAQ/@@download/ENCFF222VAQ.bam released s3://encode-public/2020/04/20/a69bc44c-73bd-4fcd-92ad-0d15cbbc19f8/ENCFF222VAQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF214RDT fastq fastq reads ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF353DLW/ 4078589312 Richard Myers, HAIB 1c9ef84462000334cb31d37f7b68754f SRA:SRR6212650 https://www.encodeproject.org/files/ENCFF214RDT/@@download/ENCFF214RDT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/89189eb9-597b-41e3-af40-402a1a28e51e/ENCFF214RDT.fastq.gz ENCFF353DLW fastq fastq reads ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF214RDT/ 3878662087 Richard Myers, HAIB 89d43a6475b5a4664e85b13ab2a4ed3f SRA:SRR6212650 https://www.encodeproject.org/files/ENCFF353DLW/@@download/ENCFF353DLW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/dc02b35f-66f8-4c5e-bd42-f63dffe5e44c/ENCFF353DLW.fastq.gz ENCFF983ICI bam bam alignments hg19 ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF353DLW/, /files/ENCFF214RDT/ 6366243439 ENCODE Processing Pipeline d16a87ac7d9ffa3519d183db42fc4e79 https://www.encodeproject.org/files/ENCFF983ICI/@@download/ENCFF983ICI.bam released s3://encode-public/2017/02/02/873dbdd1-1bf9-4d5d-a507-72862b202ac8/ENCFF983ICI.bam ENCODE3 hg19 archived ENCFF158DHA bam bam unfiltered alignments hg19 ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF353DLW/, /files/ENCFF214RDT/ 9234786857 ENCODE Processing Pipeline 7fcd57d61ee77207a2b20ff03db1ba82 https://www.encodeproject.org/files/ENCFF158DHA/@@download/ENCFF158DHA.bam released s3://encode-public/2017/02/02/c477d862-531f-4eb8-8bdf-1a9fe3b704e9/ENCFF158DHA.bam ENCODE3 hg19 archived ENCFF675DII bam bam unfiltered alignments GRCh38 ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF353DLW/, /files/ENCFF214RDT/ 9275184225 ENCODE Processing Pipeline d7dcb42565065a49273f72036f1d9c6e https://www.encodeproject.org/files/ENCFF675DII/@@download/ENCFF675DII.bam released s3://encode-public/2017/02/02/3ead232a-6a84-4116-8c6d-466d4574d42b/ENCFF675DII.bam ENCODE3 GRCh38 archived ENCFF284VSB bam bam alignments GRCh38 ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF353DLW/, /files/ENCFF214RDT/ 6375881019 ENCODE Processing Pipeline b09e445f14d88fea2d7bc4f625e155f3 https://www.encodeproject.org/files/ENCFF284VSB/@@download/ENCFF284VSB.bam released s3://encode-public/2017/02/02/b695e169-ec85-45fa-90dc-92e76c60fbcb/ENCFF284VSB.bam ENCODE3 GRCh38 archived ENCFF877ZPR bam bam alignments GRCh38 ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF353DLW/, /files/ENCFF214RDT/, /files/ENCFF110MCL/ 6024971843 ENCODE Processing Pipeline 0a66396fc27b1c273b68e676e10d576b https://www.encodeproject.org/files/ENCFF877ZPR/@@download/ENCFF877ZPR.bam released s3://encode-public/2020/10/28/f00d46cb-84ba-483b-895d-a006cc5c2229/ENCFF877ZPR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF462JOO bam bam unfiltered alignments GRCh38 ENCSR106JXD Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF353DLW/, /files/ENCFF214RDT/, /files/ENCFF110MCL/ 9348660890 ENCODE Processing Pipeline e40ebf0e1e6ef0b3922e6f671c622296 https://www.encodeproject.org/files/ENCFF462JOO/@@download/ENCFF462JOO.bam released s3://encode-public/2020/10/28/f2952a15-d4e9-48fc-ae37-b2918b0b3ec4/ENCFF462JOO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF604WAP fastq fastq reads ENCSR957RYA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NFXL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/152518/'], '@type': ['Target', 'Item'], 'label': 'NFXL1', 'title': 'NFXL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9d9c924f-b915-49bd-b15d-3ec19967cf1d', 'schema_version': '14', 'name': 'NFXL1-human', '@id': '/targets/NFXL1-human/', 'status': 'released'} DNA formaldehyde 2021-08-26 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF365JQF/ 2939208260 Michael Snyder, Stanford ddcb0ab9b4dd34c14358358876b11187 SRA:SRR16813186 https://www.encodeproject.org/files/ENCFF604WAP/@@download/ENCFF604WAP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/1b07085c-6e8a-40b8-b699-3faee2b447e5/ENCFF604WAP.fastq.gz mild to moderate bottlenecking ENCFF365JQF fastq fastq reads ENCSR957RYA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NFXL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/152518/'], '@type': ['Target', 'Item'], 'label': 'NFXL1', 'title': 'NFXL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9d9c924f-b915-49bd-b15d-3ec19967cf1d', 'schema_version': '14', 'name': 'NFXL1-human', '@id': '/targets/NFXL1-human/', 'status': 'released'} DNA formaldehyde 2021-08-26 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF604WAP/ 2577677879 Michael Snyder, Stanford 07e8d827ffda30f340ca3c9fdd52ff89 SRA:SRR16813186 https://www.encodeproject.org/files/ENCFF365JQF/@@download/ENCFF365JQF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/dfd74547-bb31-4c51-8a4d-432d4371855c/ENCFF365JQF.fastq.gz mild to moderate bottlenecking ENCFF643VMQ bam bam alignments GRCh38 ENCSR957RYA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NFXL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/152518/'], '@type': ['Target', 'Item'], 'label': 'NFXL1', 'title': 'NFXL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9d9c924f-b915-49bd-b15d-3ec19967cf1d', 'schema_version': '14', 'name': 'NFXL1-human', '@id': '/targets/NFXL1-human/', 'status': 'released'} DNA formaldehyde 2021-08-26 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF365JQF/, /files/ENCFF604WAP/ 4027681782 ENCODE Processing Pipeline 81f4f29bad8ae978d2ad818902b2b5c1 https://www.encodeproject.org/files/ENCFF643VMQ/@@download/ENCFF643VMQ.bam released s3://encode-public/2020/04/20/e50676f6-bb29-45f6-b63f-7fef6b1d0854/ENCFF643VMQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF668PFC bam bam unfiltered alignments GRCh38 ENCSR957RYA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NFXL1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/152518/'], '@type': ['Target', 'Item'], 'label': 'NFXL1', 'title': 'NFXL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9d9c924f-b915-49bd-b15d-3ec19967cf1d', 'schema_version': '14', 'name': 'NFXL1-human', '@id': '/targets/NFXL1-human/', 'status': 'released'} DNA formaldehyde 2021-08-26 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF365JQF/, /files/ENCFF604WAP/ 5341206619 ENCODE Processing Pipeline 3dfa34f839b59984fcfe6475090f2384 https://www.encodeproject.org/files/ENCFF668PFC/@@download/ENCFF668PFC.bam released s3://encode-public/2020/04/20/eed52b3d-47cc-4275-a15e-b99277dcf604/ENCFF668PFC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF721JZU bam bam unfiltered alignments hg19 ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF552UHO/, /files/ENCFF807MUK/, /files/ENCFF406IWG/ 2601940758 ENCODE Processing Pipeline 0a573d854a95d7e0bc8aee4163b1e570 https://www.encodeproject.org/files/ENCFF721JZU/@@download/ENCFF721JZU.bam released s3://encode-public/2018/02/22/c0e6f870-9aa7-498c-b15f-6f68215eef59/ENCFF721JZU.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF552UHO fastq fastq reads ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 709325868 Kevin White, UChicago 317fd7aa11df5212bed76cace7e4b137 SRA:SRR6214177 https://www.encodeproject.org/files/ENCFF552UHO/@@download/ENCFF552UHO.fastq.gz Illumina HiSeq 2500 /files/ENCFF406IWG/ released s3://encode-public/2016/03/17/2a67fde5-1b2c-41f6-ac3a-0661d451a55b/ENCFF552UHO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF406IWG fastq fastq reads ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1683232057 Kevin White, UChicago dc98c91b03b5166edf4f692c33886210 SRA:SRR6214178 https://www.encodeproject.org/files/ENCFF406IWG/@@download/ENCFF406IWG.fastq.gz Illumina HiSeq 2500 /files/ENCFF552UHO/ released s3://encode-public/2016/03/26/263aef03-0c70-4a1e-9ec2-da12d8799f0f/ENCFF406IWG.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF266VDG bam bam alignments hg19 ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF552UHO/, /files/ENCFF807MUK/, /files/ENCFF406IWG/ 2043551452 ENCODE Processing Pipeline 631f626b95a4f6bd95ba56d3f7767288 https://www.encodeproject.org/files/ENCFF266VDG/@@download/ENCFF266VDG.bam released s3://encode-public/2016/04/23/e7d85ac3-940d-44dd-ac1e-0ca0f4e3cf84/ENCFF266VDG.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF326TAE bam bam unfiltered alignments GRCh38 ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF552UHO/, /files/ENCFF643CGH/, /files/ENCFF406IWG/ 2611465289 ENCODE Processing Pipeline 3fa522fff1445d877e5e21c65eacafdb https://www.encodeproject.org/files/ENCFF326TAE/@@download/ENCFF326TAE.bam released s3://encode-public/2016/05/06/bcb7101f-3e8d-43b2-aa9a-49244ca78559/ENCFF326TAE.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF228COG bam bam alignments GRCh38 ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF552UHO/, /files/ENCFF643CGH/, /files/ENCFF406IWG/ 2042935669 ENCODE Processing Pipeline 4313bd1d9b29ada14c4e770ba1720a5c https://www.encodeproject.org/files/ENCFF228COG/@@download/ENCFF228COG.bam released s3://encode-public/2016/05/06/4da78ddb-6e46-43fb-8f94-6d3eebabae29/ENCFF228COG.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF778AGW bam bam unfiltered alignments GRCh38 ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF552UHO/, /files/ENCFF406IWG/ 2617011418 ENCODE Processing Pipeline ea990649f3d087808fa021c79dc5773a https://www.encodeproject.org/files/ENCFF778AGW/@@download/ENCFF778AGW.bam released s3://encode-public/2020/10/27/3d08f4f7-74f0-48f7-8677-55d3fef9a3a8/ENCFF778AGW.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF034BRU bam bam alignments GRCh38 ENCSR849DZW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7745/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN8-human', 'label': 'ZKSCAN8', '@id': '/targets/ZKSCAN8-human/', 'title': 'ZKSCAN8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aff0558c-2b9c-4594-bf23-082d9e9af5d2', 'status': 'released'} DNA 2016-05-18 ENCODE sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF110MCL/, /files/ENCFF552UHO/, /files/ENCFF406IWG/ 2158461723 ENCODE Processing Pipeline c5943a1cca5e2827b61fa00c0fa524ef https://www.encodeproject.org/files/ENCFF034BRU/@@download/ENCFF034BRU.bam released s3://encode-public/2020/10/27/10af5102-8d22-4993-abb7-6cf8f97c8f62/ENCFF034BRU.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF930VYA fastq fastq reads ENCSR177ADZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57594/'], '@type': ['Target', 'Item'], 'name': 'HOMEZ-human', 'label': 'HOMEZ', '@id': '/targets/HOMEZ-human/', 'title': 'HOMEZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be4a5848-f126-4606-8ce8-5840c8f8f8f9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF352DIV/ 2135259463 Michael Snyder, Stanford 027ece54f46c4fbc466f1f1205e57fd2 SRA:SRR14106171 https://www.encodeproject.org/files/ENCFF930VYA/@@download/ENCFF930VYA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/4d4928ff-480c-43a5-84f3-eef9849a7c42/ENCFF930VYA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF352DIV fastq fastq reads ENCSR177ADZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57594/'], '@type': ['Target', 'Item'], 'name': 'HOMEZ-human', 'label': 'HOMEZ', '@id': '/targets/HOMEZ-human/', 'title': 'HOMEZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be4a5848-f126-4606-8ce8-5840c8f8f8f9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF930VYA/ 2506428328 Michael Snyder, Stanford 67ce9aed3d611a2b584ad664e562ae7b SRA:SRR14106171 https://www.encodeproject.org/files/ENCFF352DIV/@@download/ENCFF352DIV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/11428a72-1fe2-44ef-a124-d601c0413e3a/ENCFF352DIV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF606MWV bam bam unfiltered alignments GRCh38 ENCSR177ADZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57594/'], '@type': ['Target', 'Item'], 'name': 'HOMEZ-human', 'label': 'HOMEZ', '@id': '/targets/HOMEZ-human/', 'title': 'HOMEZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be4a5848-f126-4606-8ce8-5840c8f8f8f9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF930VYA/, /files/ENCFF352DIV/ 4396198210 ENCODE Processing Pipeline 592d3619b123ae9b8421ce5329b0ab7d https://www.encodeproject.org/files/ENCFF606MWV/@@download/ENCFF606MWV.bam released s3://encode-public/2020/04/20/577c233b-e3b0-49dd-ba87-f23e6025f809/ENCFF606MWV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF133LIO bam bam alignments GRCh38 ENCSR177ADZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57594/'], '@type': ['Target', 'Item'], 'name': 'HOMEZ-human', 'label': 'HOMEZ', '@id': '/targets/HOMEZ-human/', 'title': 'HOMEZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be4a5848-f126-4606-8ce8-5840c8f8f8f9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF930VYA/, /files/ENCFF352DIV/ 3272066076 ENCODE Processing Pipeline a51e010c8f4350d022a23ea01fdd471e https://www.encodeproject.org/files/ENCFF133LIO/@@download/ENCFF133LIO.bam released s3://encode-public/2020/04/20/d913252e-5c31-472b-a6d7-90252c4bebd5/ENCFF133LIO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF597ZFQ fastq fastq reads ENCSR200QDR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1591'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7692/'], '@type': ['Target', 'Item'], 'name': 'ZNF133-human', 'label': 'ZNF133', '@id': '/targets/ZNF133-human/', 'title': 'ZNF133 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '86786c3f-d51f-4dd5-a2a5-8671f2785369', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF830ROL/ 2500186110 Michael Snyder, Stanford 381e2ddd5e93331049a3b67fc6930428 SRA:SRR14102877 https://www.encodeproject.org/files/ENCFF597ZFQ/@@download/ENCFF597ZFQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/5968d2dd-a1eb-4280-aa9b-0ab1aa80881e/ENCFF597ZFQ.fastq.gz mild to moderate bottlenecking ENCFF830ROL fastq fastq reads ENCSR200QDR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1591'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7692/'], '@type': ['Target', 'Item'], 'name': 'ZNF133-human', 'label': 'ZNF133', '@id': '/targets/ZNF133-human/', 'title': 'ZNF133 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '86786c3f-d51f-4dd5-a2a5-8671f2785369', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF597ZFQ/ 2715145785 Michael Snyder, Stanford fac813e61fabf8e99025bc67c8f4d1d8 SRA:SRR14102877 https://www.encodeproject.org/files/ENCFF830ROL/@@download/ENCFF830ROL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7755280d-a651-407d-9560-bf1dcc3e507e/ENCFF830ROL.fastq.gz mild to moderate bottlenecking ENCFF348BYE bam bam unfiltered alignments GRCh38 ENCSR200QDR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1591'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7692/'], '@type': ['Target', 'Item'], 'name': 'ZNF133-human', 'label': 'ZNF133', '@id': '/targets/ZNF133-human/', 'title': 'ZNF133 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '86786c3f-d51f-4dd5-a2a5-8671f2785369', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF597ZFQ/, /files/ENCFF830ROL/ 4942369512 ENCODE Processing Pipeline 82f8e56508210e7200167e42413e975d https://www.encodeproject.org/files/ENCFF348BYE/@@download/ENCFF348BYE.bam released s3://encode-public/2020/04/20/f89d2a58-23e4-424f-a399-6967a47a4b79/ENCFF348BYE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF299EXE bam bam alignments GRCh38 ENCSR200QDR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1591'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7692/'], '@type': ['Target', 'Item'], 'name': 'ZNF133-human', 'label': 'ZNF133', '@id': '/targets/ZNF133-human/', 'title': 'ZNF133 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '86786c3f-d51f-4dd5-a2a5-8671f2785369', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF597ZFQ/, /files/ENCFF830ROL/ 3736867497 ENCODE Processing Pipeline ac6b6ffaac00ebd71a9a70e6438ea5f6 https://www.encodeproject.org/files/ENCFF299EXE/@@download/ENCFF299EXE.bam released s3://encode-public/2020/04/20/52b985a1-8ed0-45cf-80ff-1ff50b9f85a8/ENCFF299EXE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF053GTT fastq fastq reads ENCSR963WAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1549'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7762/'], '@type': ['Target', 'Item'], 'name': 'ZNF215-human', 'label': 'ZNF215', '@id': '/targets/ZNF215-human/', 'title': 'ZNF215 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8bcd12fd-7e13-4ba6-a0a1-a0979f2b0e2e', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF022MXL/ 2386690363 Michael Snyder, Stanford 6b2ea67e663d40b7cac3a52fee5b76bb https://www.encodeproject.org/files/ENCFF053GTT/@@download/ENCFF053GTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/65a65875-f4ba-4a62-8218-978dbd57c313/ENCFF053GTT.fastq.gz mild to moderate bottlenecking ENCFF022MXL fastq fastq reads ENCSR963WAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1549'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7762/'], '@type': ['Target', 'Item'], 'name': 'ZNF215-human', 'label': 'ZNF215', '@id': '/targets/ZNF215-human/', 'title': 'ZNF215 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8bcd12fd-7e13-4ba6-a0a1-a0979f2b0e2e', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF053GTT/ 2811132826 Michael Snyder, Stanford 820a0de61ed61438d5f27c42e94e5f1a https://www.encodeproject.org/files/ENCFF022MXL/@@download/ENCFF022MXL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/21f2f9c1-eeb4-450a-9a37-4c286e50e88c/ENCFF022MXL.fastq.gz mild to moderate bottlenecking ENCFF971SEX bam bam unfiltered alignments GRCh38 ENCSR963WAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1549'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7762/'], '@type': ['Target', 'Item'], 'name': 'ZNF215-human', 'label': 'ZNF215', '@id': '/targets/ZNF215-human/', 'title': 'ZNF215 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8bcd12fd-7e13-4ba6-a0a1-a0979f2b0e2e', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF053GTT/, /files/ENCFF022MXL/ 4998005936 ENCODE Processing Pipeline e82ad9b8a40fc10a583adb1b3fe3974b https://www.encodeproject.org/files/ENCFF971SEX/@@download/ENCFF971SEX.bam released s3://encode-public/2020/04/20/383cbb2f-91cd-40b0-9bcd-d756bd5a66ee/ENCFF971SEX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF763XGT bam bam alignments GRCh38 ENCSR963WAA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1549'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7762/'], '@type': ['Target', 'Item'], 'name': 'ZNF215-human', 'label': 'ZNF215', '@id': '/targets/ZNF215-human/', 'title': 'ZNF215 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8bcd12fd-7e13-4ba6-a0a1-a0979f2b0e2e', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF053GTT/, /files/ENCFF022MXL/ 3858722361 ENCODE Processing Pipeline 684f5f94e4c0239234b5fed7a92ba46c https://www.encodeproject.org/files/ENCFF763XGT/@@download/ENCFF763XGT.bam released s3://encode-public/2020/04/20/bb162653-a7a2-4280-a832-0bcf0e02eaa7/ENCFF763XGT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF750TLU fastq fastq reads ENCSR647WJL Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1393020754 Kevin White, UChicago fd2b7954aaa3b4abcd4ba844f0da33d8 https://www.encodeproject.org/files/ENCFF750TLU/@@download/ENCFF750TLU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/cee0ff2d-406e-4f82-9549-10e6e8881668/ENCFF750TLU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF794XCC bam bam alignments dm6 ENCSR647WJL Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF750TLU/, /files/ENCFF479RCH/ 1866283063 Kevin White, UChicago e11c39f72125138018dc0fc3535c7daa https://www.encodeproject.org/files/ENCFF794XCC/@@download/ENCFF794XCC.bam released s3://encode-public/2019/04/13/33d01b63-053a-49dd-a463-d8901bfaf4fe/ENCFF794XCC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF257EFA bigWig bigWig read-depth normalized signal dm6 ENCSR647WJL Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF794XCC/ 17766210 Kevin White, UChicago 6168179d366e789b80b4d2c934292934 https://www.encodeproject.org/files/ENCFF257EFA/@@download/ENCFF257EFA.bigWig released s3://encode-public/2019/04/16/84e42937-730d-4834-ac52-d157067f75d0/ENCFF257EFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF038JQN bigWig bigWig signal of unique reads dm6 ENCSR647WJL Control ChIP-seq /fly-donors/ENCDO876WVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40378/'], '@type': ['Target', 'Item'], 'name': 'Hr78-dmelanogaster', 'label': 'Hr78', '@id': '/targets/Hr78-dmelanogaster/', 'title': 'Hr78 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e16cb885-7638-49a5-bd0a-8cbde441c564', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF794XCC/ 17814470 Kevin White, UChicago 3ed7008be42ccf9dea90d725523cb06f https://www.encodeproject.org/files/ENCFF038JQN/@@download/ENCFF038JQN.bigWig released s3://encode-public/2019/04/16/b662588b-f467-4994-9792-7826f5eaf64d/ENCFF038JQN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF040RTO fastq fastq reads ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF196GKM/ 1652503669 Richard Myers, HAIB fd6cfc916215f838000a3862cd52dcfc SRA:SRR8660408 https://www.encodeproject.org/files/ENCFF040RTO/@@download/ENCFF040RTO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/4898137c-fba8-4f26-a7ec-f34a19f9ec16/ENCFF040RTO.fastq.gz ENCFF196GKM fastq fastq reads ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF040RTO/ 1688576266 Richard Myers, HAIB ab2c1882170bca4a873b2979880e66a2 SRA:SRR8660408 https://www.encodeproject.org/files/ENCFF196GKM/@@download/ENCFF196GKM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/b43eecf9-7ee1-4638-9eba-b0ea247119bc/ENCFF196GKM.fastq.gz ENCFF201DDV bam bam unfiltered alignments GRCh38 ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF196GKM/, /files/ENCFF040RTO/, /files/ENCFF643CGH/ 4048894416 ENCODE Processing Pipeline ae8f0f5be82922573e03c20873afdade https://www.encodeproject.org/files/ENCFF201DDV/@@download/ENCFF201DDV.bam released s3://encode-public/2017/02/02/254ece04-7702-45da-b513-63c4d4267bb4/ENCFF201DDV.bam ENCODE3 GRCh38 archived ENCFF429TES bam bam unfiltered alignments hg19 ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF196GKM/, /files/ENCFF040RTO/, /files/ENCFF807MUK/ 4032151782 ENCODE Processing Pipeline c3086dbeaa14e1306e5edbe192456f44 https://www.encodeproject.org/files/ENCFF429TES/@@download/ENCFF429TES.bam released s3://encode-public/2017/02/02/d815fd35-37cf-4c99-a725-7b96666f6661/ENCFF429TES.bam ENCODE3 hg19 archived ENCFF762OSU bam bam alignments GRCh38 ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF196GKM/, /files/ENCFF040RTO/, /files/ENCFF643CGH/ 2696030649 ENCODE Processing Pipeline b5439a74d85f1ffd3accc9f68db9641d https://www.encodeproject.org/files/ENCFF762OSU/@@download/ENCFF762OSU.bam released s3://encode-public/2017/02/02/96df1726-b629-42a9-90d2-526e9d83622f/ENCFF762OSU.bam ENCODE3 GRCh38 archived ENCFF650TKO bam bam alignments hg19 ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF196GKM/, /files/ENCFF040RTO/, /files/ENCFF807MUK/ 2692340988 ENCODE Processing Pipeline a0c63a903aa3529f0024617042122e9c https://www.encodeproject.org/files/ENCFF650TKO/@@download/ENCFF650TKO.bam released s3://encode-public/2017/02/02/a43c968e-228f-4eed-a2b7-ca8cce0f61ea/ENCFF650TKO.bam ENCODE3 hg19 archived ENCFF213RII bam bam unfiltered alignments GRCh38 ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF040RTO/, /files/ENCFF196GKM/ 4127382886 ENCODE Processing Pipeline 81a683c66562a90781d82235e12d1177 https://www.encodeproject.org/files/ENCFF213RII/@@download/ENCFF213RII.bam released s3://encode-public/2020/06/06/ffcbc75e-e476-49fb-a718-7fca1a059991/ENCFF213RII.bam ENCODE4 v1.4.0 GRCh38 released ENCFF218QGI bam bam alignments GRCh38 ENCSR481ZPB Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF040RTO/, /files/ENCFF196GKM/ 2527448887 ENCODE Processing Pipeline 4aec9098deb14391d6bfaabcd6f09508 https://www.encodeproject.org/files/ENCFF218QGI/@@download/ENCFF218QGI.bam released s3://encode-public/2020/06/06/3ade56b9-5bb1-469d-a86b-30f782f253d0/ENCFF218QGI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF694MCW fastq fastq reads ENCSR456LEZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1115'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/60468/'], '@type': ['Target', 'Item'], 'name': 'BACH2-human', 'label': 'BACH2', '@id': '/targets/BACH2-human/', 'title': 'BACH2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfa5bf0f-8637-405c-b619-89c905dadb41', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF503VGX/ 2892058739 Michael Snyder, Stanford 2b8b3a06f1b63e2aec7d2c8eecbc0ffa SRA:SRR14849800 https://www.encodeproject.org/files/ENCFF694MCW/@@download/ENCFF694MCW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/08/70e839a7-9d35-495b-ba31-fd00e8078dca/ENCFF694MCW.fastq.gz mild to moderate bottlenecking ENCFF503VGX fastq fastq reads ENCSR456LEZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1115'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/60468/'], '@type': ['Target', 'Item'], 'name': 'BACH2-human', 'label': 'BACH2', '@id': '/targets/BACH2-human/', 'title': 'BACH2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfa5bf0f-8637-405c-b619-89c905dadb41', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF694MCW/ 3089334666 Michael Snyder, Stanford 6307df26a11c35dc7a49fe04ae33625f SRA:SRR14849800 https://www.encodeproject.org/files/ENCFF503VGX/@@download/ENCFF503VGX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/08/68520601-2dd6-4311-bc17-0194cf88b173/ENCFF503VGX.fastq.gz mild to moderate bottlenecking ENCFF167RGY bam bam unfiltered alignments GRCh38 ENCSR456LEZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1115'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/60468/'], '@type': ['Target', 'Item'], 'name': 'BACH2-human', 'label': 'BACH2', '@id': '/targets/BACH2-human/', 'title': 'BACH2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfa5bf0f-8637-405c-b619-89c905dadb41', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF694MCW/, /files/ENCFF110MCL/, /files/ENCFF503VGX/ 6301753491 ENCODE Processing Pipeline 6ba1369e1c77bb771f02b3a65a5cd8e5 https://www.encodeproject.org/files/ENCFF167RGY/@@download/ENCFF167RGY.bam released s3://encode-public/2020/10/14/32cb0fcb-4691-4c2b-9360-dd9c4297e61a/ENCFF167RGY.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF845QFR bam bam alignments GRCh38 ENCSR456LEZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1115'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/60468/'], '@type': ['Target', 'Item'], 'name': 'BACH2-human', 'label': 'BACH2', '@id': '/targets/BACH2-human/', 'title': 'BACH2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfa5bf0f-8637-405c-b619-89c905dadb41', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF694MCW/, /files/ENCFF110MCL/, /files/ENCFF503VGX/ 4832501978 ENCODE Processing Pipeline e88567e4bdbd56bbc7505ec93821edef https://www.encodeproject.org/files/ENCFF845QFR/@@download/ENCFF845QFR.bam released s3://encode-public/2020/10/14/b2ec8604-c274-4369-95b7-57d8d0ee4d47/ENCFF845QFR.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF485SFR fastq fastq reads ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF005FTS/ 2295003095 Richard Myers, HAIB 8db4c0ee8d0c565886e6ddca6226f915 SRA:SRR6212602 https://www.encodeproject.org/files/ENCFF485SFR/@@download/ENCFF485SFR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/dad6ff22-8a5f-469a-80dd-5b5f43a5245c/ENCFF485SFR.fastq.gz ENCFF005FTS fastq fastq reads ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF485SFR/ 2354236001 Richard Myers, HAIB 947a47a1c057df4a1a8f0f264ab092c9 SRA:SRR6212602 https://www.encodeproject.org/files/ENCFF005FTS/@@download/ENCFF005FTS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/e62256e5-1f87-4842-a73c-a31703845aed/ENCFF005FTS.fastq.gz ENCFF574BWZ bam bam unfiltered alignments hg19 ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005FTS/, /files/ENCFF807MUK/, /files/ENCFF485SFR/ 5510179592 ENCODE Processing Pipeline e712a4f3213ff73cf23fbc97a6692a07 https://www.encodeproject.org/files/ENCFF574BWZ/@@download/ENCFF574BWZ.bam released s3://encode-public/2017/02/02/5e098ef2-4605-4da1-885a-f33e43dfdc5f/ENCFF574BWZ.bam ENCODE3 hg19 archived ENCFF358BJP bam bam alignments hg19 ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005FTS/, /files/ENCFF807MUK/, /files/ENCFF485SFR/ 3794866709 ENCODE Processing Pipeline efe2704377ea7e0446a8f3c39b53fbfc https://www.encodeproject.org/files/ENCFF358BJP/@@download/ENCFF358BJP.bam released s3://encode-public/2017/02/02/c1cc3941-3d72-42a8-97f0-66bb92872017/ENCFF358BJP.bam ENCODE3 hg19 archived ENCFF098SSJ bam bam unfiltered alignments GRCh38 ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005FTS/, /files/ENCFF643CGH/, /files/ENCFF485SFR/ 5531146293 ENCODE Processing Pipeline fbe4193a0506a263f8034e0f9d3fdad8 https://www.encodeproject.org/files/ENCFF098SSJ/@@download/ENCFF098SSJ.bam released s3://encode-public/2017/02/02/03003551-f193-48dd-9748-a7e34c385947/ENCFF098SSJ.bam ENCODE3 GRCh38 archived ENCFF446MXQ bam bam alignments GRCh38 ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005FTS/, /files/ENCFF643CGH/, /files/ENCFF485SFR/ 3799585838 ENCODE Processing Pipeline 40b963d62a66918ac6538c455e88a2e1 https://www.encodeproject.org/files/ENCFF446MXQ/@@download/ENCFF446MXQ.bam released s3://encode-public/2017/02/02/42441e05-2b1a-4a25-9266-cf4fb2c91b66/ENCFF446MXQ.bam ENCODE3 GRCh38 archived ENCFF258KIC bam bam unfiltered alignments GRCh38 ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005FTS/, /files/ENCFF110MCL/, /files/ENCFF485SFR/ 5607174427 ENCODE Processing Pipeline e39fe6f6266ccbf58a4551770a2b6ce7 https://www.encodeproject.org/files/ENCFF258KIC/@@download/ENCFF258KIC.bam released s3://encode-public/2020/10/28/28860fc4-27cc-49eb-9dd3-51dcbcf94069/ENCFF258KIC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF885ZQW bam bam alignments GRCh38 ENCSR023BPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005FTS/, /files/ENCFF110MCL/, /files/ENCFF485SFR/ 3564612527 ENCODE Processing Pipeline 300e04c246036e2905e817aad5c43499 https://www.encodeproject.org/files/ENCFF885ZQW/@@download/ENCFF885ZQW.bam released s3://encode-public/2020/10/28/1e7c20c7-7e3d-4e02-b91e-e37ffe660e21/ENCFF885ZQW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF485UTC fastq fastq reads ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF660NKL/ 2868479264 Michael Snyder, Stanford 4079f8006c6ebde71842131513aade28 SRA:SRR5111413 https://www.encodeproject.org/files/ENCFF485UTC/@@download/ENCFF485UTC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/d8ce4c9f-8743-42a3-9080-9e06dd5f6435/ENCFF485UTC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF660NKL fastq fastq reads ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF485UTC/ 2820324280 Michael Snyder, Stanford 814b43503547ae6ef27557419224ab7a SRA:SRR5111413 https://www.encodeproject.org/files/ENCFF660NKL/@@download/ENCFF660NKL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/20807b01-5725-4e9b-a0bf-71eb41060626/ENCFF660NKL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF239RCY bam bam unfiltered alignments hg19 ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF660NKL/, /files/ENCFF485UTC/ 5674193173 ENCODE Processing Pipeline e8ad84fb779ee05c68e864fea1fe60cd https://www.encodeproject.org/files/ENCFF239RCY/@@download/ENCFF239RCY.bam released s3://encode-public/2016/09/11/f55f11db-45ce-495f-9c85-6ef46b38fe8a/ENCFF239RCY.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF461NWN bam bam unfiltered alignments GRCh38 ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF660NKL/, /files/ENCFF485UTC/ 5679961827 ENCODE Processing Pipeline d5a140eac73fdb3a8a78a4a94202d5cc https://www.encodeproject.org/files/ENCFF461NWN/@@download/ENCFF461NWN.bam released s3://encode-public/2016/09/11/782816b2-ed7a-4281-810b-7f7fbf718fad/ENCFF461NWN.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF335LND bam bam alignments GRCh38 ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF660NKL/, /files/ENCFF485UTC/ 4860815347 ENCODE Processing Pipeline dcb21dccec9bbb61f0a267ddb49df76f https://www.encodeproject.org/files/ENCFF335LND/@@download/ENCFF335LND.bam released s3://encode-public/2016/09/11/d5491389-c7c8-44ce-a8de-f528bb600063/ENCFF335LND.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF678MRZ bam bam alignments hg19 ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF660NKL/, /files/ENCFF485UTC/ 4860134044 ENCODE Processing Pipeline f9735264c3b88e4cdbd85fbbbc4f7565 https://www.encodeproject.org/files/ENCFF678MRZ/@@download/ENCFF678MRZ.bam released s3://encode-public/2016/09/11/2fc027e2-7762-403f-a3b6-ea2dbc40c2d6/ENCFF678MRZ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF757VFM bam bam unfiltered alignments GRCh38 ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF660NKL/, /files/ENCFF485UTC/ 5750404746 ENCODE Processing Pipeline 51eec4e58d81780690be74c80d1cd513 https://www.encodeproject.org/files/ENCFF757VFM/@@download/ENCFF757VFM.bam released s3://encode-public/2020/06/02/c70bfcd1-cfef-4b13-9aae-dfbfd71e549d/ENCFF757VFM.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF585IQN bam bam alignments GRCh38 ENCSR316OQD Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1078'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79027/'], '@type': ['Target', 'Item'], 'name': 'ZNF655-human', 'label': 'ZNF655', '@id': '/targets/ZNF655-human/', 'title': 'ZNF655 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'abff7545-8534-4c9f-a717-bacfe5bdfc51', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF660NKL/, /files/ENCFF485UTC/ 4855277336 ENCODE Processing Pipeline a9f5139590ccc29a56dda18a57b77992 https://www.encodeproject.org/files/ENCFF585IQN/@@download/ENCFF585IQN.bam released s3://encode-public/2020/06/02/5a572e28-903b-4d6f-9fc1-f8c739781437/ENCFF585IQN.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF878ZVK fastq fastq reads ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF256KTI/ 3380646713 Michael Snyder, Stanford 2374f20ba12664605cf3b782bdefb695 SRA:SRR5111745 https://www.encodeproject.org/files/ENCFF878ZVK/@@download/ENCFF878ZVK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/62f7e9ec-02f9-4420-a535-8af548e17cc5/ENCFF878ZVK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF256KTI fastq fastq reads ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF878ZVK/ 3430120959 Michael Snyder, Stanford 43696ca7d8a0cf1501ce97a0d439d8b9 SRA:SRR5111745 https://www.encodeproject.org/files/ENCFF256KTI/@@download/ENCFF256KTI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/06fbeedd-8f05-4386-a55e-fb2e3529e7fa/ENCFF256KTI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF400UHD bam bam unfiltered alignments hg19 ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF256KTI/, /files/ENCFF878ZVK/ 6771516041 ENCODE Processing Pipeline 9f130a19093b05d8e6c02cfa5d106a48 https://www.encodeproject.org/files/ENCFF400UHD/@@download/ENCFF400UHD.bam released s3://encode-public/2016/09/11/3109468f-eba5-432c-b351-5ddea35d46bf/ENCFF400UHD.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF226ZGM bam bam alignments hg19 ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF256KTI/, /files/ENCFF878ZVK/ 5838021399 ENCODE Processing Pipeline 424390d9d1116052a355bc1acfba44f2 https://www.encodeproject.org/files/ENCFF226ZGM/@@download/ENCFF226ZGM.bam released s3://encode-public/2016/09/11/c1670a52-cd44-4d74-ac3c-187fc690b382/ENCFF226ZGM.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF977WFN bam bam unfiltered alignments GRCh38 ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF256KTI/, /files/ENCFF878ZVK/ 6780257680 ENCODE Processing Pipeline e6647b6713e978dc6f44ba636900e491 https://www.encodeproject.org/files/ENCFF977WFN/@@download/ENCFF977WFN.bam released s3://encode-public/2016/09/11/e1b87a29-200a-4cdd-8edd-87c9b8ae02a5/ENCFF977WFN.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF937VTB bam bam alignments GRCh38 ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF256KTI/, /files/ENCFF878ZVK/ 5840598118 ENCODE Processing Pipeline 2ead6f7ec3c74c7436541b10ece5cd93 https://www.encodeproject.org/files/ENCFF937VTB/@@download/ENCFF937VTB.bam released s3://encode-public/2016/09/11/4b9809e0-901b-4f0b-95d3-034cc5333277/ENCFF937VTB.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF705BZZ bam bam alignments GRCh38 ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF878ZVK/, /files/ENCFF256KTI/ 5850155481 ENCODE Processing Pipeline 41a38ca9b255063d36a82fd16aab07dc https://www.encodeproject.org/files/ENCFF705BZZ/@@download/ENCFF705BZZ.bam released s3://encode-public/2020/06/02/f73c5466-26ca-4135-9dd1-0f8f1175f59a/ENCFF705BZZ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF688VCZ bam bam unfiltered alignments GRCh38 ENCSR523KUQ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ATF2'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1386/'], '@type': ['Target', 'Item'], 'label': 'ATF2', 'title': 'ATF2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e604684f-88d4-4a80-945d-e836ddfb8220', 'schema_version': '14', 'name': 'ATF2-human', '@id': '/targets/ATF2-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF878ZVK/, /files/ENCFF256KTI/ 6863908753 ENCODE Processing Pipeline d5dbb7470305f10800938b6a3dc4aded https://www.encodeproject.org/files/ENCFF688VCZ/@@download/ENCFF688VCZ.bam released s3://encode-public/2020/06/02/4155021e-91e9-4b47-bd06-880e14066af4/ENCFF688VCZ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF279NGQ fastq fastq reads ENCSR381FHL Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2943309462 Kevin White, UChicago 499c14445e869642b34721023c992a9f https://www.encodeproject.org/files/ENCFF279NGQ/@@download/ENCFF279NGQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF957PUB/ released s3://encode-public/2018/09/18/1f6dcc3d-4ee2-46f7-b178-9d874dece8a4/ENCFF279NGQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF195VZG bam bam alignments dm6 ENCSR381FHL Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF279NGQ/, /files/ENCFF479RCH/ 4040036361 Kevin White, UChicago 80a13fab7704605d8432c658ec29430f https://www.encodeproject.org/files/ENCFF195VZG/@@download/ENCFF195VZG.bam released s3://encode-public/2018/09/19/7a2ff0c8-0289-47bf-a230-df4d7b0f770b/ENCFF195VZG.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF886CDT bigWig bigWig signal of unique reads dm6 ENCSR381FHL Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF195VZG/ 17921068 Kevin White, UChicago 6f789134b2368fee8f34f20cd6617386 https://www.encodeproject.org/files/ENCFF886CDT/@@download/ENCFF886CDT.bigWig released s3://encode-public/2018/09/19/e6be1296-5c68-4afe-9dcc-690da0d1ca89/ENCFF886CDT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF983ITO bigWig bigWig read-depth normalized signal dm6 ENCSR381FHL Control ChIP-seq /fly-donors/ENCDO477PAI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35266/'], '@type': ['Target', 'Item'], 'name': 'bsh-dmelanogaster', 'label': 'bsh', '@id': '/targets/bsh-dmelanogaster/', 'title': 'bsh (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3cfc53b8-59bd-4cb8-93f0-e3fe0b3d01da', 'status': 'released'} dm3 2L 19757932 19776758 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF195VZG/ 17942251 Kevin White, UChicago e12058f2f70de93bd61a3dd0e4e2a943 https://www.encodeproject.org/files/ENCFF983ITO/@@download/ENCFF983ITO.bigWig released s3://encode-public/2018/09/19/c249c68f-509d-4184-a653-8f7bcb2cac21/ENCFF983ITO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF841NYD fastq fastq reads ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF005BUI/ 2472738070 Richard Myers, HAIB a23171729699c90702a2354e8be3ce20 SRA:SRR6214365 https://www.encodeproject.org/files/ENCFF841NYD/@@download/ENCFF841NYD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/7c67fe84-9b38-427b-9c9b-dbcb2feba675/ENCFF841NYD.fastq.gz ENCFF005BUI fastq fastq reads ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF841NYD/ 2529314684 Richard Myers, HAIB ab32b5cedb32dc349b6d600e29f4fe39 SRA:SRR6214365 https://www.encodeproject.org/files/ENCFF005BUI/@@download/ENCFF005BUI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/2979c58b-5319-45c2-b763-35d846fa354e/ENCFF005BUI.fastq.gz ENCFF042CPC bam bam unfiltered alignments GRCh38 ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005BUI/, /files/ENCFF643CGH/, /files/ENCFF841NYD/ 6015048974 ENCODE Processing Pipeline 7e70fbcde39591f238635a0a25a6f819 https://www.encodeproject.org/files/ENCFF042CPC/@@download/ENCFF042CPC.bam released s3://encode-public/2016/11/08/b732c7a5-6254-409c-93d1-6bbfc011413f/ENCFF042CPC.bam ENCODE3 GRCh38 archived ENCFF478NZY bam bam unfiltered alignments hg19 ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005BUI/, /files/ENCFF807MUK/, /files/ENCFF841NYD/ 5984137197 ENCODE Processing Pipeline 25819a164e75bd56242eb41049b1a16a https://www.encodeproject.org/files/ENCFF478NZY/@@download/ENCFF478NZY.bam released s3://encode-public/2016/11/08/83c68b6b-793b-4053-93fd-c2fa587dfca8/ENCFF478NZY.bam ENCODE3 hg19 archived ENCFF831UCZ bam bam alignments hg19 ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005BUI/, /files/ENCFF807MUK/, /files/ENCFF841NYD/ 4279798888 ENCODE Processing Pipeline 7c9380bd8d81ea2ee8731a45fdb1f1d9 https://www.encodeproject.org/files/ENCFF831UCZ/@@download/ENCFF831UCZ.bam released s3://encode-public/2016/11/08/6c2ab103-966c-4d13-ae81-c770f959330d/ENCFF831UCZ.bam ENCODE3 hg19 archived ENCFF163JLU bam bam alignments GRCh38 ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF005BUI/, /files/ENCFF643CGH/, /files/ENCFF841NYD/ 4286754550 ENCODE Processing Pipeline a380aace780f974fd179def52db2fc3b https://www.encodeproject.org/files/ENCFF163JLU/@@download/ENCFF163JLU.bam released s3://encode-public/2016/11/08/508eced5-77d0-4702-8581-0910696d40cc/ENCFF163JLU.bam ENCODE3 GRCh38 archived ENCFF163WPM bam bam unfiltered alignments GRCh38 ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF841NYD/, /files/ENCFF110MCL/, /files/ENCFF005BUI/ 5957914389 ENCODE Processing Pipeline 091cc90d045e3089359ccd6b29a624cd https://www.encodeproject.org/files/ENCFF163WPM/@@download/ENCFF163WPM.bam released s3://encode-public/2020/10/28/736d5803-bab5-495d-8138-5f8bc1714e19/ENCFF163WPM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF478UVF bam bam alignments GRCh38 ENCSR875UDE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF841NYD/, /files/ENCFF110MCL/, /files/ENCFF005BUI/ 4024440232 ENCODE Processing Pipeline 8ff33dd5335f3e057bdafed9a2ce3404 https://www.encodeproject.org/files/ENCFF478UVF/@@download/ENCFF478UVF.bam released s3://encode-public/2020/10/28/840eba86-34fa-4f0d-9780-c1183c241114/ENCFF478UVF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF751LBK fastq fastq reads ENCSR472BOK Control ChIP-seq /fly-donors/ENCDO344SUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32875/'], '@type': ['Target', 'Item'], 'name': 'CG7101-dmelanogaster', 'label': 'CG7101', '@id': '/targets/CG7101-dmelanogaster/', 'title': 'CG7101 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aedc28e-8163-44c2-a82c-9516e7f519ae', 'status': 'released'} dm3 X 18724598 18726156 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 866114955 Kevin White, UChicago cca33eff52a6e08a25788129c5113f00 https://www.encodeproject.org/files/ENCFF751LBK/@@download/ENCFF751LBK.fastq.gz Illumina HiSeq 4000 /files/ENCFF327VAC/ released s3://encode-public/2018/09/18/765c3d14-4a0e-4543-8f5a-198682cbdb55/ENCFF751LBK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF865QXN bam bam alignments dm6 ENCSR472BOK Control ChIP-seq /fly-donors/ENCDO344SUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32875/'], '@type': ['Target', 'Item'], 'name': 'CG7101-dmelanogaster', 'label': 'CG7101', '@id': '/targets/CG7101-dmelanogaster/', 'title': 'CG7101 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aedc28e-8163-44c2-a82c-9516e7f519ae', 'status': 'released'} dm3 X 18724598 18726156 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF751LBK/, /files/ENCFF479RCH/ 1069986419 Kevin White, UChicago 18a842b6567c79f4b0070bed85b7acce https://www.encodeproject.org/files/ENCFF865QXN/@@download/ENCFF865QXN.bam released s3://encode-public/2018/09/19/51f9b678-873b-4938-b2d3-dccfd082822a/ENCFF865QXN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF842EIR bigWig bigWig signal of unique reads dm6 ENCSR472BOK Control ChIP-seq /fly-donors/ENCDO344SUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32875/'], '@type': ['Target', 'Item'], 'name': 'CG7101-dmelanogaster', 'label': 'CG7101', '@id': '/targets/CG7101-dmelanogaster/', 'title': 'CG7101 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aedc28e-8163-44c2-a82c-9516e7f519ae', 'status': 'released'} dm3 X 18724598 18726156 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865QXN/ 17336684 Kevin White, UChicago 997cd9cb7a224fc22155af1ed25a8571 https://www.encodeproject.org/files/ENCFF842EIR/@@download/ENCFF842EIR.bigWig released s3://encode-public/2018/09/19/750bb255-1e19-42d4-aa8a-edd7963efedd/ENCFF842EIR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF916VGI bigWig bigWig read-depth normalized signal dm6 ENCSR472BOK Control ChIP-seq /fly-donors/ENCDO344SUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32875/'], '@type': ['Target', 'Item'], 'name': 'CG7101-dmelanogaster', 'label': 'CG7101', '@id': '/targets/CG7101-dmelanogaster/', 'title': 'CG7101 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9aedc28e-8163-44c2-a82c-9516e7f519ae', 'status': 'released'} dm3 X 18724598 18726156 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF865QXN/ 17343603 Kevin White, UChicago 126abdd443d49f84e51100c9779bfe98 https://www.encodeproject.org/files/ENCFF916VGI/@@download/ENCFF916VGI.bigWig released s3://encode-public/2018/09/19/2c5694bc-404a-4138-b307-8faea218cf59/ENCFF916VGI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF929WDB fastq fastq reads ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2651193989 Bing Ren, UCSD 55f3eb33605ae9a921d15cab3526d73d SRA:SRR4235703 https://www.encodeproject.org/files/ENCFF929WDB/@@download/ENCFF929WDB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/1d1ac363-210f-4801-9d0a-acb65cdd6cb9/ENCFF929WDB.fastq.gz ENCFF183PVA fastq fastq reads ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2701900624 Bing Ren, UCSD 9f6fd765cbe699d0d6900000e7a16ec9 SRA:SRR4235704 https://www.encodeproject.org/files/ENCFF183PVA/@@download/ENCFF183PVA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/796d08b3-b4b9-45e3-bb47-c99e55d75f01/ENCFF183PVA.fastq.gz ENCFF725DVQ bam bam unfiltered alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF929WDB/, /files/ENCFF018NEO/ 3619549728 ENCODE Processing Pipeline d13bb6176e87603574a59e2b5a3ef130 https://www.encodeproject.org/files/ENCFF725DVQ/@@download/ENCFF725DVQ.bam released s3://encode-public/2016/07/14/f6f718cc-008a-473d-9ec7-c8ed02fc4ab3/ENCFF725DVQ.bam ENCODE3 mm10 archived ENCFF961OGK bam bam unfiltered alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF183PVA/ 3687566982 ENCODE Processing Pipeline ec97cc2e8186bba9f8d2d39ad4834fc4 https://www.encodeproject.org/files/ENCFF961OGK/@@download/ENCFF961OGK.bam released s3://encode-public/2016/07/14/80072ec2-307c-4e1a-9d17-36f04ed2e5a3/ENCFF961OGK.bam ENCODE3 mm10 archived ENCFF128QRQ bam bam alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF183PVA/ 2707333828 ENCODE Processing Pipeline 65c8004a9aeb140d023ead687337a620 https://www.encodeproject.org/files/ENCFF128QRQ/@@download/ENCFF128QRQ.bam released s3://encode-public/2016/07/14/3379e6be-32bd-4dbf-b124-04528a695a92/ENCFF128QRQ.bam ENCODE3 mm10 archived ENCFF887RXR bam bam alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF929WDB/, /files/ENCFF018NEO/ 2663902464 ENCODE Processing Pipeline 63277868f26b80e010599f5af191e16d https://www.encodeproject.org/files/ENCFF887RXR/@@download/ENCFF887RXR.bam released s3://encode-public/2016/07/14/8087c321-b0b7-42be-9b9d-6c29bcbaa090/ENCFF887RXR.bam ENCODE3 mm10 archived ENCFF501GJL bam bam unfiltered alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF183PVA/ 3500538244 ENCODE Processing Pipeline 3c76af043e724cec58ab470c10d701dc https://www.encodeproject.org/files/ENCFF501GJL/@@download/ENCFF501GJL.bam released s3://encode-public/2020/10/08/e599a19d-751f-4981-bf60-36a6a0c5bf76/ENCFF501GJL.bam ENCODE4 v1.5.1 mm10 released ENCFF211OSF bam bam unfiltered alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF929WDB/ 3436785945 ENCODE Processing Pipeline afedc9ed56282249285c1715bec5b898 https://www.encodeproject.org/files/ENCFF211OSF/@@download/ENCFF211OSF.bam released s3://encode-public/2020/10/08/c42962f7-5d00-4af6-97c2-771255dbc4d7/ENCFF211OSF.bam ENCODE4 v1.5.1 mm10 released ENCFF170AIZ bam bam alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF183PVA/ 2712618379 ENCODE Processing Pipeline 7f724dbc6b062948d094c9c0ddf63b32 https://www.encodeproject.org/files/ENCFF170AIZ/@@download/ENCFF170AIZ.bam released s3://encode-public/2020/10/08/d0aa75f9-c81c-4294-ac9f-f0a56dc3ede5/ENCFF170AIZ.bam ENCODE4 v1.5.1 mm10 released ENCFF345KNS bam bam alignments mm10 ENCSR681NQF Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF929WDB/ 2669265528 ENCODE Processing Pipeline 651dc8c662a51bdd1882dff0e79c1d3f https://www.encodeproject.org/files/ENCFF345KNS/@@download/ENCFF345KNS.bam released s3://encode-public/2020/10/08/67fabe1c-91a5-4cba-be72-e0fcb2aa041c/ENCFF345KNS.bam ENCODE4 v1.5.1 mm10 released ENCFF117DXV fastq fastq reads ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF707FFD/ 2444974807 Michael Snyder, Stanford 7abbfba2fd63aefe4f83396865f0f2b0 SRA:SRR6212922 https://www.encodeproject.org/files/ENCFF117DXV/@@download/ENCFF117DXV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/fabe35a2-5826-4a08-b6e4-20154e36171b/ENCFF117DXV.fastq.gz mild to moderate bottlenecking ENCFF707FFD fastq fastq reads ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF117DXV/ 2966224418 Michael Snyder, Stanford 7508f82ca3b8510aca102629fae3ca6e SRA:SRR6212922 https://www.encodeproject.org/files/ENCFF707FFD/@@download/ENCFF707FFD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/e1fe39b3-521a-437f-ad40-e2a9cd32a765/ENCFF707FFD.fastq.gz mild to moderate bottlenecking ENCFF290ZXH bam bam unfiltered alignments GRCh38 ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF117DXV/, /files/ENCFF707FFD/ 5389681869 ENCODE Processing Pipeline 1aa9b59db30a96a7bdcc9ad4679053a5 https://www.encodeproject.org/files/ENCFF290ZXH/@@download/ENCFF290ZXH.bam released s3://encode-public/2017/03/23/9bd2e4d1-62ca-41c5-8b44-dbc95af2b3a9/ENCFF290ZXH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF593XMN bam bam unfiltered alignments hg19 ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF117DXV/, /files/ENCFF707FFD/ 5380067964 ENCODE Processing Pipeline 30a7665154cb861e768a375d02084bef https://www.encodeproject.org/files/ENCFF593XMN/@@download/ENCFF593XMN.bam released s3://encode-public/2017/03/23/00ef7a9e-877e-4e90-be03-81541939feae/ENCFF593XMN.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF856RNU bam bam alignments hg19 ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF117DXV/, /files/ENCFF707FFD/ 4306771074 ENCODE Processing Pipeline 74bea5d3af7afffc304e5e139ee9ebf9 https://www.encodeproject.org/files/ENCFF856RNU/@@download/ENCFF856RNU.bam released s3://encode-public/2017/03/23/c55dba9e-aa27-4119-b39b-e3df90eebf6f/ENCFF856RNU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF908QTW bam bam alignments GRCh38 ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF117DXV/, /files/ENCFF707FFD/ 4313552986 ENCODE Processing Pipeline 733f7a545c37152c93f64fda0477a98a https://www.encodeproject.org/files/ENCFF908QTW/@@download/ENCFF908QTW.bam released s3://encode-public/2017/03/23/3f022f9c-0eae-47b3-bdc8-739cf385762d/ENCFF908QTW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF542CNS bam bam alignments GRCh38 ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF117DXV/, /files/ENCFF707FFD/ 4238142953 ENCODE Processing Pipeline f930001b240c5eb4500402577562cf6c https://www.encodeproject.org/files/ENCFF542CNS/@@download/ENCFF542CNS.bam released s3://encode-public/2020/06/03/0f3d1ffe-c8b2-4b8b-ac77-901ce9cd4da7/ENCFF542CNS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF719JEL bam bam unfiltered alignments GRCh38 ENCSR236WEQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF117DXV/, /files/ENCFF707FFD/ 5382255467 ENCODE Processing Pipeline 36f89f89bef250570e8980f17053ebd0 https://www.encodeproject.org/files/ENCFF719JEL/@@download/ENCFF719JEL.bam released s3://encode-public/2020/06/03/59ea82f3-2209-42cd-9152-89f675d06345/ENCFF719JEL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF960ZTN fastq fastq reads ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF985KLY/ 2456006577 Richard Myers, HAIB 2ffdaee7f30c061f31aa01e363740011 SRA:SRR6213549 https://www.encodeproject.org/files/ENCFF960ZTN/@@download/ENCFF960ZTN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/7c8c150e-23b7-4c41-9997-3a7eb7a2f0c1/ENCFF960ZTN.fastq.gz ENCFF985KLY fastq fastq reads ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF960ZTN/ 2517610587 Richard Myers, HAIB 36953b460329c4ee341b14985c7ebf72 SRA:SRR6213549 https://www.encodeproject.org/files/ENCFF985KLY/@@download/ENCFF985KLY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/84f00710-084c-4a28-b560-dd7ab68d12ae/ENCFF985KLY.fastq.gz ENCFF424SGH bam bam unfiltered alignments hg19 ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960ZTN/, /files/ENCFF807MUK/, /files/ENCFF985KLY/ 5909711811 ENCODE Processing Pipeline da01ad3aacffac45a5989f1a94b45a6e https://www.encodeproject.org/files/ENCFF424SGH/@@download/ENCFF424SGH.bam released s3://encode-public/2016/11/08/b16f69e7-1a29-490b-b045-31df075a25fb/ENCFF424SGH.bam ENCODE3 hg19 archived ENCFF458XZK bam bam unfiltered alignments GRCh38 ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960ZTN/, /files/ENCFF985KLY/, /files/ENCFF643CGH/ 5935723734 ENCODE Processing Pipeline 2edb72ee18ee2b0f6126d310beed6eca https://www.encodeproject.org/files/ENCFF458XZK/@@download/ENCFF458XZK.bam released s3://encode-public/2016/11/08/84c90b63-6cd6-466b-91cf-5ff74b9db9fe/ENCFF458XZK.bam ENCODE3 GRCh38 archived ENCFF901FGH bam bam alignments hg19 ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960ZTN/, /files/ENCFF807MUK/, /files/ENCFF985KLY/ 4053232440 ENCODE Processing Pipeline 6f158d91dbe56f4454826e1e69c026fb https://www.encodeproject.org/files/ENCFF901FGH/@@download/ENCFF901FGH.bam released s3://encode-public/2016/11/08/e3528b36-f157-43ce-8f0e-b4397af0c21e/ENCFF901FGH.bam ENCODE3 hg19 archived ENCFF282REU bam bam alignments GRCh38 ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF960ZTN/, /files/ENCFF985KLY/, /files/ENCFF643CGH/ 4060175335 ENCODE Processing Pipeline 13812b7c4af4b52e5f87066cecd71e4a https://www.encodeproject.org/files/ENCFF282REU/@@download/ENCFF282REU.bam released s3://encode-public/2016/11/08/94ef2a48-2c01-48d1-b7aa-873bc9486e80/ENCFF282REU.bam ENCODE3 GRCh38 archived ENCFF107DUQ bam bam unfiltered alignments GRCh38 ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF985KLY/, /files/ENCFF960ZTN/ 6019379164 ENCODE Processing Pipeline 784b6618a730cef5f7ab84d507ca803a https://www.encodeproject.org/files/ENCFF107DUQ/@@download/ENCFF107DUQ.bam released s3://encode-public/2020/10/28/7847bbf4-ae0d-4c36-8e71-b51236a0fec0/ENCFF107DUQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF965PMY bam bam alignments GRCh38 ENCSR377VHO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF985KLY/, /files/ENCFF960ZTN/ 3803964281 ENCODE Processing Pipeline c1fc4da1bb22796c15c2ab25085bbc6f https://www.encodeproject.org/files/ENCFF965PMY/@@download/ENCFF965PMY.bam released s3://encode-public/2020/10/28/a426c358-23cf-4e40-b78d-2e7ab8563450/ENCFF965PMY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF642NHF fastq fastq reads ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF446ZHN/ 3305284402 Michael Snyder, Stanford 5327f2cd6acada855b238f6f48bfdee1 SRA:SRR5112192 https://www.encodeproject.org/files/ENCFF642NHF/@@download/ENCFF642NHF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/7e71dd1e-43fd-478f-a180-4ce616e8b914/ENCFF642NHF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF446ZHN fastq fastq reads ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF642NHF/ 3358354689 Michael Snyder, Stanford c587893f2ff5acd452040fb0a3467282 SRA:SRR5112192 https://www.encodeproject.org/files/ENCFF446ZHN/@@download/ENCFF446ZHN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/fb09d262-4937-4d6e-9991-ee8d6b336b3a/ENCFF446ZHN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF245VNC bam bam unfiltered alignments GRCh38 ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF446ZHN/, /files/ENCFF643CGH/, /files/ENCFF642NHF/ 6687183268 ENCODE Processing Pipeline a44bc8e50fe3dff01a22af3093b87143 https://www.encodeproject.org/files/ENCFF245VNC/@@download/ENCFF245VNC.bam released s3://encode-public/2016/09/11/23e7d30d-7105-48ca-a840-979f869fc038/ENCFF245VNC.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF866BNF bam bam unfiltered alignments hg19 ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF446ZHN/, /files/ENCFF807MUK/, /files/ENCFF642NHF/ 6677738708 ENCODE Processing Pipeline 7657b2f64bf565fa4d8181a7922be2d1 https://www.encodeproject.org/files/ENCFF866BNF/@@download/ENCFF866BNF.bam released s3://encode-public/2016/09/11/caab2f45-ab67-49b5-bc25-7b75b2a2709c/ENCFF866BNF.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF668OCS bam bam alignments hg19 ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF446ZHN/, /files/ENCFF807MUK/, /files/ENCFF642NHF/ 5679015494 ENCODE Processing Pipeline 1978c341137b5d828b81b08dc9c87f5c https://www.encodeproject.org/files/ENCFF668OCS/@@download/ENCFF668OCS.bam released s3://encode-public/2016/09/11/24eedd90-17b6-41c6-936d-195b22a569d9/ENCFF668OCS.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF129QRT bam bam alignments GRCh38 ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF446ZHN/, /files/ENCFF643CGH/, /files/ENCFF642NHF/ 5683410328 ENCODE Processing Pipeline ba9b51a1fce924695bdde2a0c9b925ba https://www.encodeproject.org/files/ENCFF129QRT/@@download/ENCFF129QRT.bam released s3://encode-public/2016/09/11/a8877aa3-23e8-4e5e-8d79-a0ab00adf727/ENCFF129QRT.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF108EAT bam bam unfiltered alignments GRCh38 ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF642NHF/, /files/ENCFF446ZHN/ 6769171100 ENCODE Processing Pipeline e96cce9e30815922981c58f708b332f7 https://www.encodeproject.org/files/ENCFF108EAT/@@download/ENCFF108EAT.bam released s3://encode-public/2020/06/02/6232d520-0d17-43a9-a93b-a4eca15f5445/ENCFF108EAT.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF490JCT bam bam alignments GRCh38 ENCSR860UAT Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1118'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/59335/'], '@type': ['Target', 'Item'], 'name': 'PRDM12-human', 'label': 'PRDM12', '@id': '/targets/PRDM12-human/', 'title': 'PRDM12 (Homo sapiens)', 'investigated_as': ['chromatin remodeler'], 'uuid': '29bb9677-02da-42df-ab48-23261a9e1077', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF642NHF/, /files/ENCFF446ZHN/ 5731116650 ENCODE Processing Pipeline 813d503842c93605fa1e781ead05e241 https://www.encodeproject.org/files/ENCFF490JCT/@@download/ENCFF490JCT.bam released s3://encode-public/2020/06/02/d7ac5ef2-a8fe-4c4e-a0c7-a635faf5f423/ENCFF490JCT.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF875RIZ fastq fastq reads ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF293SGU/ 3195300073 Michael Snyder, Stanford 6b113a7e5b124468a53ccc0e83450a4a SRA:SRR6212658 https://www.encodeproject.org/files/ENCFF875RIZ/@@download/ENCFF875RIZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/4580beea-6d51-4f64-beb4-ab1366648239/ENCFF875RIZ.fastq.gz mild to moderate bottlenecking ENCFF293SGU fastq fastq reads ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF875RIZ/ 2654728478 Michael Snyder, Stanford 26fe008dfe13022dfc73bb5cbb57632a SRA:SRR6212658 https://www.encodeproject.org/files/ENCFF293SGU/@@download/ENCFF293SGU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/165ae57f-de74-46b0-9b3f-cd5e16ddc25a/ENCFF293SGU.fastq.gz mild to moderate bottlenecking ENCFF541PDU bam bam alignments hg19 ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF875RIZ/, /files/ENCFF807MUK/, /files/ENCFF293SGU/ 4300874214 ENCODE Processing Pipeline d26181c46c79f4804d8ec20cfd928548 https://www.encodeproject.org/files/ENCFF541PDU/@@download/ENCFF541PDU.bam released s3://encode-public/2017/03/23/d708429f-cf1f-455c-9176-4dc97ff36282/ENCFF541PDU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF135NHH bam bam unfiltered alignments hg19 ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF875RIZ/, /files/ENCFF807MUK/, /files/ENCFF293SGU/ 5610341348 ENCODE Processing Pipeline e6cd0a9a89051241a5cc0b94071c5741 https://www.encodeproject.org/files/ENCFF135NHH/@@download/ENCFF135NHH.bam released s3://encode-public/2017/03/23/0e6435a4-6e72-4738-9585-2122533ba494/ENCFF135NHH.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF883LGP bam bam alignments GRCh38 ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF875RIZ/, /files/ENCFF643CGH/, /files/ENCFF293SGU/ 4304690062 ENCODE Processing Pipeline 1723752b4cd2d4ef7844ca697ae14128 https://www.encodeproject.org/files/ENCFF883LGP/@@download/ENCFF883LGP.bam released s3://encode-public/2017/08/18/7a5259e3-353f-48f6-809f-c7cf8d6e8406/ENCFF883LGP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF084HDB bam bam unfiltered alignments GRCh38 ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF875RIZ/, /files/ENCFF643CGH/, /files/ENCFF293SGU/ 5618311358 ENCODE Processing Pipeline 2d98e8f4a471332eae9ea776fdc0f296 https://www.encodeproject.org/files/ENCFF084HDB/@@download/ENCFF084HDB.bam released s3://encode-public/2017/08/18/81df92d7-0d8f-4f8f-b520-ef31dc7d8986/ENCFF084HDB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF407WCG bam bam unfiltered alignments GRCh38 ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF293SGU/, /files/ENCFF875RIZ/ 5613455106 ENCODE Processing Pipeline 987dbb4a88ade14b144c1683191cf8fd https://www.encodeproject.org/files/ENCFF407WCG/@@download/ENCFF407WCG.bam released s3://encode-public/2020/06/03/24a7cb9b-2775-4670-8d07-2adf74f7d590/ENCFF407WCG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF959OZB bam bam alignments GRCh38 ENCSR088BOY Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF293SGU/, /files/ENCFF875RIZ/ 4228572100 ENCODE Processing Pipeline 86caa391fc074fa5c505e29b8e161579 https://www.encodeproject.org/files/ENCFF959OZB/@@download/ENCFF959OZB.bam released s3://encode-public/2020/06/03/a629719a-f21c-4816-ac54-ff475cd7ba4a/ENCFF959OZB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF458QHC fastq fastq reads ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF696JSC/ 2960903700 Michael Snyder, Stanford 91e902087efeee26707e56aec6823a84 SRA:SRR5111951 https://www.encodeproject.org/files/ENCFF458QHC/@@download/ENCFF458QHC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/9f0bd9d9-242e-45ad-ba77-60a7fc04bd7d/ENCFF458QHC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF696JSC fastq fastq reads ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF458QHC/ 3007831952 Michael Snyder, Stanford 324e1a551cf2b63375e3fa11f2e1f0f3 SRA:SRR5111951 https://www.encodeproject.org/files/ENCFF696JSC/@@download/ENCFF696JSC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/9a66950d-29a6-4f8a-9c19-7c0d4e3bbc06/ENCFF696JSC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF566GFE bam bam unfiltered alignments hg19 ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF458QHC/, /files/ENCFF696JSC/ 6103184371 ENCODE Processing Pipeline dc6ae29e25f6182c94060cd5f6ad666f https://www.encodeproject.org/files/ENCFF566GFE/@@download/ENCFF566GFE.bam released s3://encode-public/2016/09/11/9dff83d7-9b43-4c43-a20c-02b3c7ab1c9d/ENCFF566GFE.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF805INZ bam bam alignments hg19 ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF458QHC/, /files/ENCFF696JSC/ 5130868354 ENCODE Processing Pipeline dc3d788031ef02686e051a9a06ff2484 https://www.encodeproject.org/files/ENCFF805INZ/@@download/ENCFF805INZ.bam released s3://encode-public/2016/09/11/ee838171-0cc9-4cdf-b3c8-31274ae9282a/ENCFF805INZ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF705FKI bam bam unfiltered alignments GRCh38 ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF458QHC/, /files/ENCFF696JSC/ 6111942319 ENCODE Processing Pipeline 8d1ff620508259a8a308bf609a441058 https://www.encodeproject.org/files/ENCFF705FKI/@@download/ENCFF705FKI.bam released s3://encode-public/2016/09/11/90041f1f-c5c3-4028-ac55-dc266f031327/ENCFF705FKI.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF323SCL bam bam alignments GRCh38 ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF458QHC/, /files/ENCFF696JSC/ 5133539506 ENCODE Processing Pipeline 6e958f60686f71007205afd57b1e2d9d https://www.encodeproject.org/files/ENCFF323SCL/@@download/ENCFF323SCL.bam released s3://encode-public/2016/09/11/5ea80d6b-56cb-4012-adf5-11723ebb8232/ENCFF323SCL.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF228HOP bam bam unfiltered alignments GRCh38 ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF458QHC/, /files/ENCFF696JSC/ 6194834480 ENCODE Processing Pipeline a8abeb4a338c6b9c93f85752ed3fe950 https://www.encodeproject.org/files/ENCFF228HOP/@@download/ENCFF228HOP.bam released s3://encode-public/2020/06/02/af52a0b7-5b21-43b4-bc76-0b6eec49a64e/ENCFF228HOP.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF949NGG bam bam alignments GRCh38 ENCSR679WSJ Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1620'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7580/'], '@type': ['Target', 'Item'], 'name': 'ZNF32-human', 'label': 'ZNF32', '@id': '/targets/ZNF32-human/', 'title': 'ZNF32 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4812904d-9fb1-4ae4-a1e1-f6ed2b24bb95', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF458QHC/, /files/ENCFF696JSC/ 5204910415 ENCODE Processing Pipeline 8c55d00098cf7d01fddacfc528baeb0e https://www.encodeproject.org/files/ENCFF949NGG/@@download/ENCFF949NGG.bam released s3://encode-public/2020/06/02/f4bea8cd-ee61-4c32-93f1-7be57ba62b17/ENCFF949NGG.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF590HZD fastq fastq reads ENCSR920WVV Control ChIP-seq /fly-donors/ENCDO534HAW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740879/'], '@type': ['Target', 'Item'], 'name': 'CG34367-dmelanogaster', 'label': 'CG34367', '@id': '/targets/CG34367-dmelanogaster/', 'title': 'CG34367 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd4d21309-7f4e-4d73-8a91-b7e9b5f6ddee', 'status': 'released'} dm3 2L 10340921 10360228 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 628101706 Kevin White, UChicago 8e0f2353f43aa2871793188d5b377ac6 https://www.encodeproject.org/files/ENCFF590HZD/@@download/ENCFF590HZD.fastq.gz Illumina HiSeq 4000 /files/ENCFF751LBK/ released s3://encode-public/2018/09/18/55df5bb0-1c5a-4acc-afe8-2f6b87022497/ENCFF590HZD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF232HQT bam bam alignments dm6 ENCSR920WVV Control ChIP-seq /fly-donors/ENCDO534HAW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740879/'], '@type': ['Target', 'Item'], 'name': 'CG34367-dmelanogaster', 'label': 'CG34367', '@id': '/targets/CG34367-dmelanogaster/', 'title': 'CG34367 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd4d21309-7f4e-4d73-8a91-b7e9b5f6ddee', 'status': 'released'} dm3 2L 10340921 10360228 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF590HZD/, /files/ENCFF479RCH/ 813477211 Kevin White, UChicago 5a44f4d503dbe8e7bd4a998a992b7197 https://www.encodeproject.org/files/ENCFF232HQT/@@download/ENCFF232HQT.bam released s3://encode-public/2018/09/19/69644cc1-7c57-407f-82f4-625c2be5a488/ENCFF232HQT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF626CYH bigWig bigWig signal of unique reads dm6 ENCSR920WVV Control ChIP-seq /fly-donors/ENCDO534HAW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740879/'], '@type': ['Target', 'Item'], 'name': 'CG34367-dmelanogaster', 'label': 'CG34367', '@id': '/targets/CG34367-dmelanogaster/', 'title': 'CG34367 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd4d21309-7f4e-4d73-8a91-b7e9b5f6ddee', 'status': 'released'} dm3 2L 10340921 10360228 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF232HQT/ 17481960 Kevin White, UChicago 91e51da3b53d4c3971885e14d2bdaada https://www.encodeproject.org/files/ENCFF626CYH/@@download/ENCFF626CYH.bigWig released s3://encode-public/2018/09/19/2f7ae2b0-d10e-47c5-a13f-deeec0edcf47/ENCFF626CYH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF732HDY bigWig bigWig read-depth normalized signal dm6 ENCSR920WVV Control ChIP-seq /fly-donors/ENCDO534HAW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740879/'], '@type': ['Target', 'Item'], 'name': 'CG34367-dmelanogaster', 'label': 'CG34367', '@id': '/targets/CG34367-dmelanogaster/', 'title': 'CG34367 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd4d21309-7f4e-4d73-8a91-b7e9b5f6ddee', 'status': 'released'} dm3 2L 10340921 10360228 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF232HQT/ 17526082 Kevin White, UChicago baeda60267a51f533ef3f9f4a75c1ab5 https://www.encodeproject.org/files/ENCFF732HDY/@@download/ENCFF732HDY.bigWig released s3://encode-public/2018/09/19/f9832d48-9f1a-406e-bd69-e20ebdd71ffa/ENCFF732HDY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF345SUH fastq fastq reads ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF758XTS/ 3565900657 Michael Snyder, Stanford 7a1b24d66159f1cc5b3f49c494506352 SRA:SRR6214335 https://www.encodeproject.org/files/ENCFF345SUH/@@download/ENCFF345SUH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/de8d29f4-e919-46f6-9391-3826a6f93b87/ENCFF345SUH.fastq.gz mild to moderate bottlenecking ENCFF758XTS fastq fastq reads ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF345SUH/ 3172177177 Michael Snyder, Stanford 3546142b97d41c1834aa39af896a7c32 SRA:SRR6214335 https://www.encodeproject.org/files/ENCFF758XTS/@@download/ENCFF758XTS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/d965088d-6802-430f-bb3a-dccb12578c1e/ENCFF758XTS.fastq.gz mild to moderate bottlenecking ENCFF769PYH bam bam unfiltered alignments hg19 ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 101 /files/ENCFF758XTS/, /files/ENCFF345SUH/, /files/ENCFF807MUK/ 6344158377 ENCODE Processing Pipeline 49a4e20f38c143ecd30f566f7ae55091 https://www.encodeproject.org/files/ENCFF769PYH/@@download/ENCFF769PYH.bam released s3://encode-public/2017/05/10/c997103a-0bf8-471e-a05a-136fda029d87/ENCFF769PYH.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF484QUN bam bam alignments GRCh38 ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 101 /files/ENCFF758XTS/, /files/ENCFF345SUH/, /files/ENCFF643CGH/ 5115097007 ENCODE Processing Pipeline cd76390f40291cc474a0100c6799e833 https://www.encodeproject.org/files/ENCFF484QUN/@@download/ENCFF484QUN.bam released s3://encode-public/2017/05/10/39827f66-8844-4445-8546-c96df01796ea/ENCFF484QUN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF486FYK bam bam alignments hg19 ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 101 /files/ENCFF758XTS/, /files/ENCFF345SUH/, /files/ENCFF807MUK/ 5103672355 ENCODE Processing Pipeline 20331a41002cbc57857434aecccfc553 https://www.encodeproject.org/files/ENCFF486FYK/@@download/ENCFF486FYK.bam released s3://encode-public/2017/05/10/c043c35b-2ee5-4f74-9f18-8910363524ac/ENCFF486FYK.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF744CPV bam bam unfiltered alignments GRCh38 ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 101 /files/ENCFF758XTS/, /files/ENCFF345SUH/, /files/ENCFF643CGH/ 6353273679 ENCODE Processing Pipeline cd0a825759e7ba5fd38a5152454cf039 https://www.encodeproject.org/files/ENCFF744CPV/@@download/ENCFF744CPV.bam released s3://encode-public/2017/05/10/e7deceed-088b-45de-a011-1e0c2c641367/ENCFF744CPV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF252VCZ bam bam unfiltered alignments GRCh38 ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF758XTS/, /files/ENCFF345SUH/ 6345045022 ENCODE Processing Pipeline feea60e29948c6a85e129297c77a035b https://www.encodeproject.org/files/ENCFF252VCZ/@@download/ENCFF252VCZ.bam released s3://encode-public/2020/06/02/0a275f7c-18e8-48b4-b363-5e58647e73eb/ENCFF252VCZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF109QBH bam bam alignments GRCh38 ENCSR999EPI Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002106 spleen tissue Homo sapiens DNA 2017-05-11 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF758XTS/, /files/ENCFF345SUH/ 4955458706 ENCODE Processing Pipeline fce906ac19b2d6d9c86ffc751e931f86 https://www.encodeproject.org/files/ENCFF109QBH/@@download/ENCFF109QBH.bam released s3://encode-public/2020/06/02/f767c02c-6bd7-43ec-b16c-2c829dc29df7/ENCFF109QBH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF512TNG fastq fastq reads ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 1 1_1 76 single-ended 2624975481 Bradley Bernstein, Broad 1e0e70eda427b30d1fede4a0e22a9c61 SRA:SRR5832820 https://www.encodeproject.org/files/ENCFF512TNG/@@download/ENCFF512TNG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/04/29/949b27d4-459f-4c4d-b741-bb2fb2a78732/ENCFF512TNG.fastq.gz ENCFF122IYJ bam bam unfiltered alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF512TNG/ 3100057782 ENCODE Processing Pipeline de664270fca41aa13d6a4c91ddbb983a https://www.encodeproject.org/files/ENCFF122IYJ/@@download/ENCFF122IYJ.bam released s3://encode-public/2016/08/09/b03ab96a-cd6f-49bb-970c-2753386188bb/ENCFF122IYJ.bam ENCODE3 GRCh38 archived ENCFF111TOF bam bam alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF512TNG/ 2611683266 ENCODE Processing Pipeline 354fe699193d58bacf734913768caed3 https://www.encodeproject.org/files/ENCFF111TOF/@@download/ENCFF111TOF.bam released s3://encode-public/2016/08/09/a6cb6498-fc3a-4930-aa3f-a2b8342856ea/ENCFF111TOF.bam ENCODE3 GRCh38 archived ENCFF759ROI fastq fastq reads ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 single-ended 1361811844 Bradley Bernstein, Broad fb542988181bfd42a4527c03937b7751 SRA:SRR5832821 https://www.encodeproject.org/files/ENCFF759ROI/@@download/ENCFF759ROI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/f8bd8a26-a038-4697-8306-3648fe08eb70/ENCFF759ROI.fastq.gz ENCFF562XOM fastq fastq reads ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 single-ended 1321001444 Bradley Bernstein, Broad a6a1574202655232d39d4e955df570be SRA:SRR5832822 https://www.encodeproject.org/files/ENCFF562XOM/@@download/ENCFF562XOM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/5235cfe6-4f82-4906-a71c-04aa4a8c8abf/ENCFF562XOM.fastq.gz ENCFF676ITE fastq fastq reads ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 single-ended 405285263 Bradley Bernstein, Broad aac369ae631cf8e32942a1944d243e6e SRA:SRR5832823 https://www.encodeproject.org/files/ENCFF676ITE/@@download/ENCFF676ITE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/580ae158-1d08-4f82-bfc7-6a8b36179296/ENCFF676ITE.fastq.gz ENCFF757ZBR fastq fastq reads ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 single-ended 448201464 Bradley Bernstein, Broad 453d9807ccd694c587dbd8af0a71f6ff SRA:SRR5832824 https://www.encodeproject.org/files/ENCFF757ZBR/@@download/ENCFF757ZBR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/d7e4b571-bc24-4a0f-99c5-6c018ae40b9d/ENCFF757ZBR.fastq.gz ENCFF155RHX bam bam unfiltered alignments hg19 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 /files/ENCFF757ZBR/, /files/ENCFF562XOM/, /files/ENCFF759ROI/, /files/ENCFF807MUK/, /files/ENCFF676ITE/ 3441054831 ENCODE Processing Pipeline f60fcc0c8f62aa5752690933c3c751f7 https://www.encodeproject.org/files/ENCFF155RHX/@@download/ENCFF155RHX.bam released s3://encode-public/2016/10/26/9cb218f4-a94d-4269-bc20-94fffd7ffeb6/ENCFF155RHX.bam ENCODE3 hg19 archived ENCFF054RMF bam bam alignments hg19 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 /files/ENCFF757ZBR/, /files/ENCFF562XOM/, /files/ENCFF759ROI/, /files/ENCFF807MUK/, /files/ENCFF676ITE/ 2909275773 ENCODE Processing Pipeline 9ecc925caa15f5d4fc3a7a2a75b9bbf2 https://www.encodeproject.org/files/ENCFF054RMF/@@download/ENCFF054RMF.bam released s3://encode-public/2016/10/26/11849d5d-7939-4ad3-b26a-0b61892c1dba/ENCFF054RMF.bam ENCODE3 hg19 archived ENCFF258VRL bam bam unfiltered alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 /files/ENCFF757ZBR/, /files/ENCFF562XOM/, /files/ENCFF759ROI/, /files/ENCFF676ITE/, /files/ENCFF643CGH/ 3451607722 ENCODE Processing Pipeline fcc22e8e9f44c73ff469fb1de266d0eb https://www.encodeproject.org/files/ENCFF258VRL/@@download/ENCFF258VRL.bam released s3://encode-public/2016/10/26/32cdba26-131a-4508-9533-8a6fffd7f10b/ENCFF258VRL.bam ENCODE3 GRCh38 archived ENCFF517QKI bam bam alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 /files/ENCFF757ZBR/, /files/ENCFF562XOM/, /files/ENCFF759ROI/, /files/ENCFF676ITE/, /files/ENCFF643CGH/ 2913100088 ENCODE Processing Pipeline 5e83ed95108d4f6ca669fe26fd4a382b https://www.encodeproject.org/files/ENCFF517QKI/@@download/ENCFF517QKI.bam released s3://encode-public/2016/10/26/01aaf03a-87a9-4ced-ae79-27f7f517535f/ENCFF517QKI.bam ENCODE3 GRCh38 archived ENCFF277KPM bam bam unfiltered alignments hg19 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF512TNG/ 3092475545 ENCODE Processing Pipeline 75876eacf057c6fb0e78c49fe00f32e5 https://www.encodeproject.org/files/ENCFF277KPM/@@download/ENCFF277KPM.bam released s3://encode-public/2016/10/27/aeee5f57-e0b3-47cb-ab09-435e67669147/ENCFF277KPM.bam ENCODE3 hg19 archived ENCFF108SOQ bam bam alignments hg19 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF512TNG/ 2608300851 ENCODE Processing Pipeline 04d6657890fcda77708b783f290e2286 https://www.encodeproject.org/files/ENCFF108SOQ/@@download/ENCFF108SOQ.bam released s3://encode-public/2016/10/27/5a360c5d-20b5-46cc-aff8-a5febabe8aa9/ENCFF108SOQ.bam ENCODE3 hg19 archived ENCFF112LAG bam bam alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 /files/ENCFF676ITE/, /files/ENCFF562XOM/, /files/ENCFF759ROI/, /files/ENCFF110MCL/, /files/ENCFF757ZBR/ 2975790316 ENCODE Processing Pipeline f381173a9b5e1592a8ea8b19647c403f https://www.encodeproject.org/files/ENCFF112LAG/@@download/ENCFF112LAG.bam released s3://encode-public/2020/08/20/3efcc3b9-a3a2-4d70-8706-ea7d11e25458/ENCFF112LAG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF986JEV bam bam unfiltered alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF512TNG/ 3142781321 ENCODE Processing Pipeline 2e3c51373553c9853ac63b0e85833fe3 https://www.encodeproject.org/files/ENCFF986JEV/@@download/ENCFF986JEV.bam released s3://encode-public/2020/08/20/73b92d9c-99f7-446e-86ab-3d9283fa01e1/ENCFF986JEV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF314GIG bam bam unfiltered alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 2 2_1 76 /files/ENCFF676ITE/, /files/ENCFF562XOM/, /files/ENCFF759ROI/, /files/ENCFF110MCL/, /files/ENCFF757ZBR/ 3493472796 ENCODE Processing Pipeline a85e57c7a26b7210944e270e77905c77 https://www.encodeproject.org/files/ENCFF314GIG/@@download/ENCFF314GIG.bam released s3://encode-public/2020/08/20/e3fe2563-576e-4848-a21e-14bc3c065d1e/ENCFF314GIG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF571NYD bam bam alignments GRCh38 ENCSR475NOQ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2016-08-09 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF512TNG/ 2669206666 ENCODE Processing Pipeline c7540b6d46a08a9c7754dbefc1cb23bb https://www.encodeproject.org/files/ENCFF571NYD/@@download/ENCFF571NYD.bam released s3://encode-public/2020/08/20/06d9e3b7-23f1-444d-a849-2ac61fe0095a/ENCFF571NYD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF056ZKF fastq fastq reads ENCSR471YLT Control ChIP-seq /fly-donors/ENCDO938WLL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36621/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-HP2-dmelanogaster', 'label': 'Su(var)2-HP2', '@id': '/targets/Su(var)2-HP2-dmelanogaster/', 'title': 'Su(var)2-HP2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '75d683aa-a5b9-49d7-9d16-7069fd3c6327', 'status': 'released'} dm3 2R 14604710 14623440 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1615848081 Kevin White, UChicago b271a80dbba553f32fa65bbed2694884 https://www.encodeproject.org/files/ENCFF056ZKF/@@download/ENCFF056ZKF.fastq.gz Illumina HiSeq 4000 /files/ENCFF179CKA/, /files/ENCFF060CZG/ released s3://encode-public/2018/09/18/44f23d3e-bb51-4c54-92af-240cf3a262b3/ENCFF056ZKF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF850JBY bam bam alignments dm6 ENCSR471YLT Control ChIP-seq /fly-donors/ENCDO938WLL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36621/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-HP2-dmelanogaster', 'label': 'Su(var)2-HP2', '@id': '/targets/Su(var)2-HP2-dmelanogaster/', 'title': 'Su(var)2-HP2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '75d683aa-a5b9-49d7-9d16-7069fd3c6327', 'status': 'released'} dm3 2R 14604710 14623440 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF056ZKF/, /files/ENCFF479RCH/ 2229146019 Kevin White, UChicago e552e5a29e5b7175fd4185b0cb2dfdd1 https://www.encodeproject.org/files/ENCFF850JBY/@@download/ENCFF850JBY.bam released s3://encode-public/2018/09/19/9dbfe1d6-a6b4-4f01-a7f2-2b4758454553/ENCFF850JBY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF452NTD bigWig bigWig signal of unique reads dm6 ENCSR471YLT Control ChIP-seq /fly-donors/ENCDO938WLL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36621/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-HP2-dmelanogaster', 'label': 'Su(var)2-HP2', '@id': '/targets/Su(var)2-HP2-dmelanogaster/', 'title': 'Su(var)2-HP2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '75d683aa-a5b9-49d7-9d16-7069fd3c6327', 'status': 'released'} dm3 2R 14604710 14623440 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF850JBY/ 14201795 Kevin White, UChicago f8c407e882e665bc06aa3245b4f0f7f0 https://www.encodeproject.org/files/ENCFF452NTD/@@download/ENCFF452NTD.bigWig released s3://encode-public/2018/09/19/bffa7247-20c2-4e66-96ab-965cd24d0cb1/ENCFF452NTD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF863UZX bigWig bigWig read-depth normalized signal dm6 ENCSR471YLT Control ChIP-seq /fly-donors/ENCDO938WLL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36621/'], '@type': ['Target', 'Item'], 'name': 'Su(var)2-HP2-dmelanogaster', 'label': 'Su(var)2-HP2', '@id': '/targets/Su(var)2-HP2-dmelanogaster/', 'title': 'Su(var)2-HP2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '75d683aa-a5b9-49d7-9d16-7069fd3c6327', 'status': 'released'} dm3 2R 14604710 14623440 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF850JBY/ 14130963 Kevin White, UChicago 961dc1cf330610c7359121b5e49ed738 https://www.encodeproject.org/files/ENCFF863UZX/@@download/ENCFF863UZX.bigWig released s3://encode-public/2018/09/19/600c6681-dc00-4e28-bf14-e2d28dd6034b/ENCFF863UZX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF285LRT fastq fastq reads ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF568XFG/ 3220482768 Richard Myers, HAIB bfd428e668201419676d4225e9ed8c3e SRA:SRR6213252 https://www.encodeproject.org/files/ENCFF285LRT/@@download/ENCFF285LRT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/ff344572-fb50-4378-ac81-3b84d7283458/ENCFF285LRT.fastq.gz ENCFF568XFG fastq fastq reads ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF285LRT/ 3366737915 Richard Myers, HAIB 22a4be5b3ac5a3db24157dca843fc008 SRA:SRR6213252 https://www.encodeproject.org/files/ENCFF568XFG/@@download/ENCFF568XFG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/49f86bb2-5e7c-4855-81bf-8dd61379125a/ENCFF568XFG.fastq.gz ENCFF332NTZ bam bam unfiltered alignments hg19 ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF285LRT/, /files/ENCFF807MUK/, /files/ENCFF568XFG/ 7791942172 ENCODE Processing Pipeline 35f33a25058a6f580a08830a73c8b284 https://www.encodeproject.org/files/ENCFF332NTZ/@@download/ENCFF332NTZ.bam released s3://encode-public/2016/11/08/27720906-2952-48ce-b023-b700b00bc21b/ENCFF332NTZ.bam ENCODE3 hg19 archived ENCFF871XUD bam bam unfiltered alignments GRCh38 ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF285LRT/, /files/ENCFF643CGH/, /files/ENCFF568XFG/ 7827864078 ENCODE Processing Pipeline 7a2ea91e8d327dfd032a08c90e7040b4 https://www.encodeproject.org/files/ENCFF871XUD/@@download/ENCFF871XUD.bam released s3://encode-public/2016/11/08/625a4ea7-096c-4606-8fcb-5bb6b97c2fff/ENCFF871XUD.bam ENCODE3 GRCh38 archived ENCFF433SCH bam bam alignments hg19 ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF285LRT/, /files/ENCFF807MUK/, /files/ENCFF568XFG/ 5459360660 ENCODE Processing Pipeline faf172f7196fb2dbb9ec254d3a69f4e7 https://www.encodeproject.org/files/ENCFF433SCH/@@download/ENCFF433SCH.bam released s3://encode-public/2016/11/08/9ee2a8bd-e9af-4fca-aa93-550abb1f5d6e/ENCFF433SCH.bam ENCODE3 hg19 archived ENCFF911MRC bam bam alignments GRCh38 ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF285LRT/, /files/ENCFF643CGH/, /files/ENCFF568XFG/ 5467745363 ENCODE Processing Pipeline a8579f7d556f50b4bd1a7bc781f5425d https://www.encodeproject.org/files/ENCFF911MRC/@@download/ENCFF911MRC.bam released s3://encode-public/2016/11/08/ee50f919-fb53-41fb-a604-a2e930bc5f94/ENCFF911MRC.bam ENCODE3 GRCh38 archived ENCFF205JTA bam bam unfiltered alignments GRCh38 ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF568XFG/, /files/ENCFF285LRT/, /files/ENCFF110MCL/ 7836531985 ENCODE Processing Pipeline a3f0225de2cab853b6cbc995f905c7de https://www.encodeproject.org/files/ENCFF205JTA/@@download/ENCFF205JTA.bam released s3://encode-public/2020/10/28/3054ea5d-d1cd-495d-aa55-7a1362215876/ENCFF205JTA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF527PHV bam bam alignments GRCh38 ENCSR622ZDY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF568XFG/, /files/ENCFF285LRT/, /files/ENCFF110MCL/ 5187449413 ENCODE Processing Pipeline 5d87735c3efbb4db1b61e523e0f8f426 https://www.encodeproject.org/files/ENCFF527PHV/@@download/ENCFF527PHV.bam released s3://encode-public/2020/10/28/90eafd97-fd30-4460-9c7a-f64337d7ebd0/ENCFF527PHV.bam ENCODE4 v1.5.1 GRCh38 released ENCFF688VIR fastq fastq reads ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF500RYP/ 2661406325 Richard Myers, HAIB f4c5f4b851f7aa6d99ba258b505c3cf8 SRA:SRR6212879 https://www.encodeproject.org/files/ENCFF688VIR/@@download/ENCFF688VIR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/e71ea2f1-1978-4e8a-a59b-0e8c759b9d45/ENCFF688VIR.fastq.gz ENCFF500RYP fastq fastq reads ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF688VIR/ 2768198492 Richard Myers, HAIB 22e0af43dc7128b2ca51d46cdd7f982c SRA:SRR6212879 https://www.encodeproject.org/files/ENCFF500RYP/@@download/ENCFF500RYP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/5bf806a9-f6bf-410c-9aa6-88900d1b3f38/ENCFF500RYP.fastq.gz ENCFF264PMM bam bam unfiltered alignments hg19 ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF688VIR/, /files/ENCFF807MUK/, /files/ENCFF500RYP/ 6401492340 ENCODE Processing Pipeline 65269a0e1ac3502b07540a3506004db9 https://www.encodeproject.org/files/ENCFF264PMM/@@download/ENCFF264PMM.bam released s3://encode-public/2016/11/08/8cb0fef5-0fce-4e52-b94d-930997190757/ENCFF264PMM.bam ENCODE3 hg19 archived ENCFF484ZUJ bam bam unfiltered alignments GRCh38 ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF688VIR/, /files/ENCFF500RYP/, /files/ENCFF643CGH/ 6426030731 ENCODE Processing Pipeline c5b701716d562548ceb90d38dde2c21f https://www.encodeproject.org/files/ENCFF484ZUJ/@@download/ENCFF484ZUJ.bam released s3://encode-public/2016/11/08/0b666098-44dc-4f61-91dd-0322125e4404/ENCFF484ZUJ.bam ENCODE3 GRCh38 archived ENCFF680OHW bam bam alignments GRCh38 ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF688VIR/, /files/ENCFF500RYP/, /files/ENCFF643CGH/ 4616123675 ENCODE Processing Pipeline 398a3378864be273619e6afb80183a76 https://www.encodeproject.org/files/ENCFF680OHW/@@download/ENCFF680OHW.bam released s3://encode-public/2016/11/08/af5fb380-09af-4b51-bd5e-c36516d32f15/ENCFF680OHW.bam ENCODE3 GRCh38 archived ENCFF444SZG bam bam alignments hg19 ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF688VIR/, /files/ENCFF807MUK/, /files/ENCFF500RYP/ 4610445901 ENCODE Processing Pipeline 81b0188f7ecf512ac8208f6e90d05c8c https://www.encodeproject.org/files/ENCFF444SZG/@@download/ENCFF444SZG.bam released s3://encode-public/2016/11/08/42ee6eb2-b151-48a3-a310-469497b7a333/ENCFF444SZG.bam ENCODE3 hg19 archived ENCFF115RBZ bam bam unfiltered alignments GRCh38 ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF688VIR/, /files/ENCFF500RYP/ 6454129594 ENCODE Processing Pipeline f0587fb3e14e4beabba41bc5038378bd https://www.encodeproject.org/files/ENCFF115RBZ/@@download/ENCFF115RBZ.bam released s3://encode-public/2020/06/06/c998d36d-0ef1-481f-a969-3b283c84ca5a/ENCFF115RBZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF125SDF bam bam alignments GRCh38 ENCSR170BPY Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF688VIR/, /files/ENCFF500RYP/ 4316183246 ENCODE Processing Pipeline c77fce2ff7ed1ddadcf0a22385edf038 https://www.encodeproject.org/files/ENCFF125SDF/@@download/ENCFF125SDF.bam released s3://encode-public/2020/06/06/31acbeb5-3c9d-408d-9321-0a80626ad03b/ENCFF125SDF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF071SPE fastq fastq reads ENCSR971AQO Control ChIP-seq /fly-donors/ENCDO050ROU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38884/'], '@type': ['Target', 'Item'], 'name': 'exex-dmelanogaster', 'label': 'exex', '@id': '/targets/exex-dmelanogaster/', 'title': 'exex (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd61d500c-d6eb-416a-9157-08c6682c7f4b', 'status': 'released'} dm3 3L 7897266 7987635 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 329131458 Kevin White, UChicago cd33aa8966cd404303cbfa1c6ee8255a https://www.encodeproject.org/files/ENCFF071SPE/@@download/ENCFF071SPE.fastq.gz Illumina HiSeq 4000 /files/ENCFF267RPM/ released s3://encode-public/2018/09/18/83516354-b7c5-4a74-8fc4-707e77b10310/ENCFF071SPE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF981QSI fastq fastq reads ENCSR971AQO Control ChIP-seq /fly-donors/ENCDO050ROU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38884/'], '@type': ['Target', 'Item'], 'name': 'exex-dmelanogaster', 'label': 'exex', '@id': '/targets/exex-dmelanogaster/', 'title': 'exex (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd61d500c-d6eb-416a-9157-08c6682c7f4b', 'status': 'released'} dm3 3L 7897266 7987635 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 819194107 Kevin White, UChicago dc789d29a2887e3b687af452e3989c10 https://www.encodeproject.org/files/ENCFF981QSI/@@download/ENCFF981QSI.fastq.gz Illumina HiSeq 4000 /files/ENCFF267RPM/ released s3://encode-public/2018/09/18/0ce7a89a-bf54-4237-943b-b95666032f8f/ENCFF981QSI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF384JOB bam bam alignments dm6 ENCSR971AQO Control ChIP-seq /fly-donors/ENCDO050ROU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38884/'], '@type': ['Target', 'Item'], 'name': 'exex-dmelanogaster', 'label': 'exex', '@id': '/targets/exex-dmelanogaster/', 'title': 'exex (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd61d500c-d6eb-416a-9157-08c6682c7f4b', 'status': 'released'} dm3 3L 7897266 7987635 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF981QSI/, /files/ENCFF071SPE/, /files/ENCFF479RCH/ 1521859359 Kevin White, UChicago 7f35625f8d19bc5d54a1beda75cf9f91 https://www.encodeproject.org/files/ENCFF384JOB/@@download/ENCFF384JOB.bam released s3://encode-public/2018/09/19/322bb86f-88d3-4ed9-a9e6-f77d1688b227/ENCFF384JOB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF880AQT bigWig bigWig signal of unique reads dm6 ENCSR971AQO Control ChIP-seq /fly-donors/ENCDO050ROU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38884/'], '@type': ['Target', 'Item'], 'name': 'exex-dmelanogaster', 'label': 'exex', '@id': '/targets/exex-dmelanogaster/', 'title': 'exex (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd61d500c-d6eb-416a-9157-08c6682c7f4b', 'status': 'released'} dm3 3L 7897266 7987635 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF384JOB/ 17706489 Kevin White, UChicago c47111cddd9005c57ca1e41a6525c911 https://www.encodeproject.org/files/ENCFF880AQT/@@download/ENCFF880AQT.bigWig released s3://encode-public/2018/09/19/ed1a492b-6533-45d6-85c1-48811ae78aa1/ENCFF880AQT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF129DEO bigWig bigWig read-depth normalized signal dm6 ENCSR971AQO Control ChIP-seq /fly-donors/ENCDO050ROU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38884/'], '@type': ['Target', 'Item'], 'name': 'exex-dmelanogaster', 'label': 'exex', '@id': '/targets/exex-dmelanogaster/', 'title': 'exex (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd61d500c-d6eb-416a-9157-08c6682c7f4b', 'status': 'released'} dm3 3L 7897266 7987635 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF384JOB/ 17710452 Kevin White, UChicago 14193e60b21b63d90bab828f7f7a1685 https://www.encodeproject.org/files/ENCFF129DEO/@@download/ENCFF129DEO.bigWig released s3://encode-public/2018/09/19/1475d0ae-9843-498d-9da7-1834af8a54b0/ENCFF129DEO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF885QLQ fastq fastq reads ENCSR333QIL Control ChIP-seq /fly-donors/ENCDO090TOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31991/'], '@type': ['Target', 'Item'], 'name': 'CG9817-dmelanogaster', 'label': 'CG9817', '@id': '/targets/CG9817-dmelanogaster/', 'title': 'CG9817 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '547a6eb7-eb14-40dc-a9f8-f6e8374846a2', 'status': 'released'} dm3 X 10595395 10616885 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 761841569 Kevin White, UChicago 506538dd7b3467ab209948275c8fde9a https://www.encodeproject.org/files/ENCFF885QLQ/@@download/ENCFF885QLQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF047UOM/ released s3://encode-public/2018/09/18/e2d21a51-edfa-426f-86d7-61fab3b1f355/ENCFF885QLQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF154JYN bam bam alignments dm6 ENCSR333QIL Control ChIP-seq /fly-donors/ENCDO090TOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31991/'], '@type': ['Target', 'Item'], 'name': 'CG9817-dmelanogaster', 'label': 'CG9817', '@id': '/targets/CG9817-dmelanogaster/', 'title': 'CG9817 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '547a6eb7-eb14-40dc-a9f8-f6e8374846a2', 'status': 'released'} dm3 X 10595395 10616885 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF885QLQ/, /files/ENCFF479RCH/ 1002968303 Kevin White, UChicago ee2b9e4acb4c3ed5c044de8efead43b0 https://www.encodeproject.org/files/ENCFF154JYN/@@download/ENCFF154JYN.bam released s3://encode-public/2018/09/19/4b65b180-162e-474e-ae26-ad8c75e292b0/ENCFF154JYN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF571ICF bigWig bigWig signal of unique reads dm6 ENCSR333QIL Control ChIP-seq /fly-donors/ENCDO090TOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31991/'], '@type': ['Target', 'Item'], 'name': 'CG9817-dmelanogaster', 'label': 'CG9817', '@id': '/targets/CG9817-dmelanogaster/', 'title': 'CG9817 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '547a6eb7-eb14-40dc-a9f8-f6e8374846a2', 'status': 'released'} dm3 X 10595395 10616885 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF154JYN/ 17654739 Kevin White, UChicago ede62af897cbe9766491f187fe2fe3a8 https://www.encodeproject.org/files/ENCFF571ICF/@@download/ENCFF571ICF.bigWig released s3://encode-public/2018/09/19/f9abf545-8bcf-4e27-af49-02a633280d25/ENCFF571ICF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF330WBY bigWig bigWig read-depth normalized signal dm6 ENCSR333QIL Control ChIP-seq /fly-donors/ENCDO090TOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31991/'], '@type': ['Target', 'Item'], 'name': 'CG9817-dmelanogaster', 'label': 'CG9817', '@id': '/targets/CG9817-dmelanogaster/', 'title': 'CG9817 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '547a6eb7-eb14-40dc-a9f8-f6e8374846a2', 'status': 'released'} dm3 X 10595395 10616885 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF154JYN/ 17660291 Kevin White, UChicago f138f24b5e518ef5bbfa52d7bb135644 https://www.encodeproject.org/files/ENCFF330WBY/@@download/ENCFF330WBY.bigWig released s3://encode-public/2018/09/19/55b4c63f-8e82-4216-b187-186c059e03e3/ENCFF330WBY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF613PQJ fastq fastq reads ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF917RIA/ 2703334770 Richard Myers, HAIB 38c1e33d8704e39bb11505616056bf91 SRA:SRR6213056 https://www.encodeproject.org/files/ENCFF613PQJ/@@download/ENCFF613PQJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/596592d0-1753-4237-be21-9b6c44331004/ENCFF613PQJ.fastq.gz ENCFF917RIA fastq fastq reads ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF613PQJ/ 2632632616 Richard Myers, HAIB 3f3374ad18f874576db40f203392255b SRA:SRR6213056 https://www.encodeproject.org/files/ENCFF917RIA/@@download/ENCFF917RIA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/260a5650-d7c0-4bd3-9265-732553bf2636/ENCFF917RIA.fastq.gz ENCFF223UIA bam bam unfiltered alignments GRCh38 ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF917RIA/, /files/ENCFF643CGH/, /files/ENCFF613PQJ/ 6375619243 ENCODE Processing Pipeline 43b7e7cba35e47a66d0d911e993a0baf https://www.encodeproject.org/files/ENCFF223UIA/@@download/ENCFF223UIA.bam released s3://encode-public/2016/11/08/34dc7825-7ed6-470d-a2e1-79a1fb3314e3/ENCFF223UIA.bam ENCODE3 GRCh38 archived ENCFF189DMP bam bam unfiltered alignments hg19 ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF917RIA/, /files/ENCFF807MUK/, /files/ENCFF613PQJ/ 6347275787 ENCODE Processing Pipeline cce6061f404949d00f4884f1270da99d https://www.encodeproject.org/files/ENCFF189DMP/@@download/ENCFF189DMP.bam released s3://encode-public/2016/11/08/a7048adc-27a0-4312-9144-f0751353b9f4/ENCFF189DMP.bam ENCODE3 hg19 archived ENCFF993NZP bam bam alignments GRCh38 ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF917RIA/, /files/ENCFF643CGH/, /files/ENCFF613PQJ/ 4493983294 ENCODE Processing Pipeline 9084f47b29ede927e49086f8a3f30ea0 https://www.encodeproject.org/files/ENCFF993NZP/@@download/ENCFF993NZP.bam released s3://encode-public/2016/11/08/9b82d390-1bf2-4357-b918-d00a603e9c17/ENCFF993NZP.bam ENCODE3 GRCh38 archived ENCFF201UJX bam bam alignments hg19 ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF917RIA/, /files/ENCFF807MUK/, /files/ENCFF613PQJ/ 4488501132 ENCODE Processing Pipeline fb5c22e79374b2d0ff5f286bfdbe27da https://www.encodeproject.org/files/ENCFF201UJX/@@download/ENCFF201UJX.bam released s3://encode-public/2016/11/08/ffb81a8d-e1c3-4f04-844c-4d7c55117949/ENCFF201UJX.bam ENCODE3 hg19 archived ENCFF855RBG bam bam alignments GRCh38 ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF917RIA/, /files/ENCFF613PQJ/ 4206253315 ENCODE Processing Pipeline 39bc4a04228bea877a741979bc73b58f https://www.encodeproject.org/files/ENCFF855RBG/@@download/ENCFF855RBG.bam released s3://encode-public/2020/06/06/2218533c-d61d-4416-98c4-e8c5de2c26e5/ENCFF855RBG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF054KBY bam bam unfiltered alignments GRCh38 ENCSR602GPF Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF917RIA/, /files/ENCFF613PQJ/ 6427136991 ENCODE Processing Pipeline ed31f6600433a54dd792fdfe75241626 https://www.encodeproject.org/files/ENCFF054KBY/@@download/ENCFF054KBY.bam released s3://encode-public/2020/06/06/4133bfe2-0912-408d-be99-977084f687c3/ENCFF054KBY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF342YBR fastq fastq reads ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF247VVB/ 3119375931 Michael Snyder, Stanford 86313c4c2c7570d356366936458d9968 SRA:SRR5112393 https://www.encodeproject.org/files/ENCFF342YBR/@@download/ENCFF342YBR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/a4bc5c96-ea6f-4417-8536-eabd027d620a/ENCFF342YBR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF247VVB fastq fastq reads ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF342YBR/ 3175834125 Michael Snyder, Stanford 36fbfd9f1bbaa5962f05f3af8cb9b411 SRA:SRR5112393 https://www.encodeproject.org/files/ENCFF247VVB/@@download/ENCFF247VVB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/fdc7171f-829d-4e95-a308-73fe0206f447/ENCFF247VVB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF086LLR bam bam unfiltered alignments GRCh38 ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF342YBR/, /files/ENCFF247VVB/ 6308990899 ENCODE Processing Pipeline 4332983e91b623a3833a73c386ad9548 https://www.encodeproject.org/files/ENCFF086LLR/@@download/ENCFF086LLR.bam released s3://encode-public/2016/08/13/5e012c9b-ead1-4db1-863e-97cd34df8702/ENCFF086LLR.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF699FIT bam bam alignments GRCh38 ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF342YBR/, /files/ENCFF247VVB/ 5313026071 ENCODE Processing Pipeline 9ad11173c29d41ddea549c1eeb4806a4 https://www.encodeproject.org/files/ENCFF699FIT/@@download/ENCFF699FIT.bam released s3://encode-public/2016/08/13/81a6b195-7e49-4a2d-a041-bff20f2f3fb1/ENCFF699FIT.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF690PDK bam bam alignments hg19 ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF342YBR/, /files/ENCFF247VVB/ 5311723349 ENCODE Processing Pipeline 983d8b73a34e6aa74bd0cb6b9399270e https://www.encodeproject.org/files/ENCFF690PDK/@@download/ENCFF690PDK.bam released s3://encode-public/2016/09/11/51c45a2b-95e2-40f2-85c8-0e2b2969138f/ENCFF690PDK.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF011JJJ bam bam unfiltered alignments hg19 ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF342YBR/, /files/ENCFF247VVB/ 6302533554 ENCODE Processing Pipeline 42c3d9f100c5ee12f4dfe6cc25ac2e0d https://www.encodeproject.org/files/ENCFF011JJJ/@@download/ENCFF011JJJ.bam released s3://encode-public/2016/09/11/5bf8c79d-8047-4b87-9d04-b3f94660b7b7/ENCFF011JJJ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF973ALD bam bam unfiltered alignments GRCh38 ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF342YBR/, /files/ENCFF247VVB/ 6386049106 ENCODE Processing Pipeline bb3b65914484704c8ac63c88324b8a9d https://www.encodeproject.org/files/ENCFF973ALD/@@download/ENCFF973ALD.bam released s3://encode-public/2020/06/02/fcabc50b-22d7-4e00-85bc-aa8fcc0bc558/ENCFF973ALD.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF709TVD bam bam alignments GRCh38 ENCSR499OOH Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7566/'], '@type': ['Target', 'Item'], 'name': 'ZNF18-human', 'label': 'ZNF18', '@id': '/targets/ZNF18-human/', 'title': 'ZNF18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8dfbe1bb-6bff-46db-968d-34711e51f45b', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF342YBR/, /files/ENCFF247VVB/ 5408343830 ENCODE Processing Pipeline 7a265bd60db492d56feadf765068e7b9 https://www.encodeproject.org/files/ENCFF709TVD/@@download/ENCFF709TVD.bam released s3://encode-public/2020/06/02/5a3416cf-0f38-4a20-919a-526345f6badc/ENCFF709TVD.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF736BPA fastq fastq reads ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF595HTZ/ 3080790437 Michael Snyder, Stanford ed9cbe1b61a2952b00059c446a43dd81 SRA:SRR5111582 https://www.encodeproject.org/files/ENCFF736BPA/@@download/ENCFF736BPA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/969fcf48-b201-40a3-91fd-3eb6ee00a26d/ENCFF736BPA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF595HTZ fastq fastq reads ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF736BPA/ 3336785529 Michael Snyder, Stanford 7ac4ee5d56fe341d0c1a09fa3dca0763 SRA:SRR5111582 https://www.encodeproject.org/files/ENCFF595HTZ/@@download/ENCFF595HTZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/b5c5ad25-f932-47ae-8906-f213905e356e/ENCFF595HTZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF084JUL bam bam unfiltered alignments GRCh38 ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF736BPA/, /files/ENCFF643CGH/, /files/ENCFF595HTZ/ 6386618576 ENCODE Processing Pipeline 32550cf5acfe04084f48265b6e4a57c3 https://www.encodeproject.org/files/ENCFF084JUL/@@download/ENCFF084JUL.bam released s3://encode-public/2016/08/13/5c529fd6-9960-440a-9621-81f8985f8ba3/ENCFF084JUL.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF945YPE bam bam alignments GRCh38 ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF736BPA/, /files/ENCFF643CGH/, /files/ENCFF595HTZ/ 5179581470 ENCODE Processing Pipeline 66215e837c03a55931e3bab148a212aa https://www.encodeproject.org/files/ENCFF945YPE/@@download/ENCFF945YPE.bam released s3://encode-public/2016/08/13/0b89691f-1334-40e5-87bf-741fa91da3ec/ENCFF945YPE.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF854QOQ bam bam unfiltered alignments hg19 ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF736BPA/, /files/ENCFF807MUK/, /files/ENCFF595HTZ/ 6378701096 ENCODE Processing Pipeline 9de8488233084f0b564bc75e2d5501dc https://www.encodeproject.org/files/ENCFF854QOQ/@@download/ENCFF854QOQ.bam released s3://encode-public/2016/09/11/c9296133-634c-4c42-a549-a9b50d435081/ENCFF854QOQ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF909YLP bam bam alignments hg19 ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF736BPA/, /files/ENCFF807MUK/, /files/ENCFF595HTZ/ 5177342756 ENCODE Processing Pipeline 4b29708b3c7e90b90644ea0acbb0d3f7 https://www.encodeproject.org/files/ENCFF909YLP/@@download/ENCFF909YLP.bam released s3://encode-public/2016/09/11/477908a6-6e22-46ec-9549-03074cc054e3/ENCFF909YLP.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF274EQA bam bam unfiltered alignments GRCh38 ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF736BPA/, /files/ENCFF595HTZ/ 6485790507 ENCODE Processing Pipeline 3fead9a68c835ade6651df6fa0b7e5ef https://www.encodeproject.org/files/ENCFF274EQA/@@download/ENCFF274EQA.bam released s3://encode-public/2020/06/02/fbd35137-1618-4801-b089-a28125484182/ENCFF274EQA.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF350INM bam bam alignments GRCh38 ENCSR429LAP Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-879'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/121340/'], '@type': ['Target', 'Item'], 'name': 'SP7-human', 'label': 'SP7', '@id': '/targets/SP7-human/', 'title': 'SP7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c46a0829-f2ee-4687-9a26-da76853494a4', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF736BPA/, /files/ENCFF595HTZ/ 5247030004 ENCODE Processing Pipeline 96c799d940e75a576481a1fd1be2352c https://www.encodeproject.org/files/ENCFF350INM/@@download/ENCFF350INM.bam released s3://encode-public/2020/06/02/6b956235-01b2-4422-bf85-24ef09915cad/ENCFF350INM.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF159FMI fastq fastq reads ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF409EYE/ 3660152824 Michael Snyder, Stanford 02821225f72094e7f4ac18bc442e0060 SRA:SRR8660274 https://www.encodeproject.org/files/ENCFF159FMI/@@download/ENCFF159FMI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/12ece07f-6005-4e4c-9328-ca9cc5be3c9d/ENCFF159FMI.fastq.gz mild to moderate bottlenecking ENCFF409EYE fastq fastq reads ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF159FMI/ 4176326892 Michael Snyder, Stanford afa24e60c92e80f6880481dfed3c8426 SRA:SRR8660274 https://www.encodeproject.org/files/ENCFF409EYE/@@download/ENCFF409EYE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/28/7030476c-9a67-4b64-b454-f5601a951474/ENCFF409EYE.fastq.gz mild to moderate bottlenecking ENCFF927QPR bam bam unfiltered alignments hg19 ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF159FMI/, /files/ENCFF409EYE/ 7372232922 ENCODE Processing Pipeline 291375fb42742bdc445feb739c4f66d2 https://www.encodeproject.org/files/ENCFF927QPR/@@download/ENCFF927QPR.bam released s3://encode-public/2016/11/25/ff8dcdef-d747-4455-9878-3c71f9e07c0e/ENCFF927QPR.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF420UJS bam bam unfiltered alignments GRCh38 ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF159FMI/, /files/ENCFF409EYE/ 7383147990 ENCODE Processing Pipeline 14f29e29ecac302797fd43890b3f2415 https://www.encodeproject.org/files/ENCFF420UJS/@@download/ENCFF420UJS.bam released s3://encode-public/2016/11/25/a97308cc-a08d-4556-b7e6-ce7d3de8bd07/ENCFF420UJS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF861DJN bam bam alignments hg19 ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF159FMI/, /files/ENCFF409EYE/ 5557664620 ENCODE Processing Pipeline a257451fd483c25c57c4bb8ef1b9d2ec https://www.encodeproject.org/files/ENCFF861DJN/@@download/ENCFF861DJN.bam released s3://encode-public/2016/11/25/4fb08386-0ca3-4675-92aa-147810402e54/ENCFF861DJN.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF966UPW bam bam alignments GRCh38 ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF159FMI/, /files/ENCFF409EYE/ 5570089638 ENCODE Processing Pipeline cc6add7752ba1b28f7f660d268a24485 https://www.encodeproject.org/files/ENCFF966UPW/@@download/ENCFF966UPW.bam released s3://encode-public/2016/11/25/e294e832-8cfa-4c0c-8f67-995fec24cb3a/ENCFF966UPW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF059FMF bam bam unfiltered alignments GRCh38 ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF159FMI/, /files/ENCFF409EYE/ 7393298201 ENCODE Processing Pipeline 803f284144c4dd74f9800e4da4449b5e https://www.encodeproject.org/files/ENCFF059FMF/@@download/ENCFF059FMF.bam released s3://encode-public/2020/06/02/e8b44ce5-4214-4e6a-b281-1f3030e1cf0c/ENCFF059FMF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF427ZDQ bam bam alignments GRCh38 ENCSR856OVE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF159FMI/, /files/ENCFF409EYE/ 5473348190 ENCODE Processing Pipeline 1bf14efc5af90424361b6170046f8028 https://www.encodeproject.org/files/ENCFF427ZDQ/@@download/ENCFF427ZDQ.bam released s3://encode-public/2020/06/02/45b36582-0c4d-48a2-b545-cd47b7a95c74/ENCFF427ZDQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF557TCC fastq fastq reads ENCSR196IIL Control ChIP-seq /fly-donors/ENCDO207ILD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41095/'], '@type': ['Target', 'Item'], 'name': 'D1-dmelanogaster', 'label': 'D1', '@id': '/targets/D1-dmelanogaster/', 'title': 'D1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8c634e7-1c50-44b8-a938-fc0980aa20c6', 'status': 'released'} dm3 3R 5063204 5085040 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 436334748 Kevin White, UChicago 6f9d8de46645e3174206a62e5939a99f https://www.encodeproject.org/files/ENCFF557TCC/@@download/ENCFF557TCC.fastq.gz Illumina HiSeq 4000 /files/ENCFF981QSI/, /files/ENCFF071SPE/ released s3://encode-public/2018/09/18/61171391-00b8-4138-8267-68500330e50b/ENCFF557TCC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF605TJC bam bam alignments dm6 ENCSR196IIL Control ChIP-seq /fly-donors/ENCDO207ILD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41095/'], '@type': ['Target', 'Item'], 'name': 'D1-dmelanogaster', 'label': 'D1', '@id': '/targets/D1-dmelanogaster/', 'title': 'D1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8c634e7-1c50-44b8-a938-fc0980aa20c6', 'status': 'released'} dm3 3R 5063204 5085040 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF557TCC/, /files/ENCFF479RCH/ 571039627 Kevin White, UChicago a7e9b4036291c072321f2159e5582286 https://www.encodeproject.org/files/ENCFF605TJC/@@download/ENCFF605TJC.bam released s3://encode-public/2018/09/19/6586cd68-19f6-47b3-8b42-c14cc56ee256/ENCFF605TJC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF199SUT bigWig bigWig signal of unique reads dm6 ENCSR196IIL Control ChIP-seq /fly-donors/ENCDO207ILD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41095/'], '@type': ['Target', 'Item'], 'name': 'D1-dmelanogaster', 'label': 'D1', '@id': '/targets/D1-dmelanogaster/', 'title': 'D1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8c634e7-1c50-44b8-a938-fc0980aa20c6', 'status': 'released'} dm3 3R 5063204 5085040 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF605TJC/ 17537624 Kevin White, UChicago 2ee2d1efe015c34ffe5d9b9b4f539dc3 https://www.encodeproject.org/files/ENCFF199SUT/@@download/ENCFF199SUT.bigWig released s3://encode-public/2018/09/19/5928341c-2287-4a93-9b73-5ca3dde31098/ENCFF199SUT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF765BUR bigWig bigWig read-depth normalized signal dm6 ENCSR196IIL Control ChIP-seq /fly-donors/ENCDO207ILD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41095/'], '@type': ['Target', 'Item'], 'name': 'D1-dmelanogaster', 'label': 'D1', '@id': '/targets/D1-dmelanogaster/', 'title': 'D1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c8c634e7-1c50-44b8-a938-fc0980aa20c6', 'status': 'released'} dm3 3R 5063204 5085040 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF605TJC/ 17550320 Kevin White, UChicago b2b36445f1dd5ddabb81977514a272c1 https://www.encodeproject.org/files/ENCFF765BUR/@@download/ENCFF765BUR.bigWig released s3://encode-public/2018/09/19/a815e962-055e-42bd-b515-ac6a1cfed072/ENCFF765BUR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF645EXP fastq fastq reads ENCSR488SGR Control ChIP-seq /fly-donors/ENCDO994RJT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41411/'], '@type': ['Target', 'Item'], 'name': 'Fer3-dmelanogaster', 'label': 'Fer3', '@id': '/targets/Fer3-dmelanogaster/', 'title': 'Fer3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e237e32f-1cf1-416f-b30f-daabb0db0004', 'status': 'released'} dm3 3R 7515118 7537896 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1104274540 Kevin White, UChicago cff7a0efcbfb703b1651ebae4bbc9a24 https://www.encodeproject.org/files/ENCFF645EXP/@@download/ENCFF645EXP.fastq.gz Illumina HiSeq 4000 /files/ENCFF426DJQ/ released s3://encode-public/2018/09/18/de091bca-438c-4478-94e6-9fa434b3f7cb/ENCFF645EXP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF528AMV bam bam alignments dm6 ENCSR488SGR Control ChIP-seq /fly-donors/ENCDO994RJT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41411/'], '@type': ['Target', 'Item'], 'name': 'Fer3-dmelanogaster', 'label': 'Fer3', '@id': '/targets/Fer3-dmelanogaster/', 'title': 'Fer3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e237e32f-1cf1-416f-b30f-daabb0db0004', 'status': 'released'} dm3 3R 7515118 7537896 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF645EXP/, /files/ENCFF479RCH/ 1479929498 Kevin White, UChicago 1229ccc0efeee63a2fc5c7e16828654b https://www.encodeproject.org/files/ENCFF528AMV/@@download/ENCFF528AMV.bam released s3://encode-public/2018/09/19/760d61a5-3c50-4b56-99f7-74bef9e2fb87/ENCFF528AMV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF955CRN bigWig bigWig signal of unique reads dm6 ENCSR488SGR Control ChIP-seq /fly-donors/ENCDO994RJT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41411/'], '@type': ['Target', 'Item'], 'name': 'Fer3-dmelanogaster', 'label': 'Fer3', '@id': '/targets/Fer3-dmelanogaster/', 'title': 'Fer3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e237e32f-1cf1-416f-b30f-daabb0db0004', 'status': 'released'} dm3 3R 7515118 7537896 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF528AMV/ 17814738 Kevin White, UChicago bea8c76c14a4775d6213d108b963851e https://www.encodeproject.org/files/ENCFF955CRN/@@download/ENCFF955CRN.bigWig released s3://encode-public/2018/09/19/9fc0be72-bb7a-4cfe-b722-06506cc33527/ENCFF955CRN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF335LOC bigWig bigWig read-depth normalized signal dm6 ENCSR488SGR Control ChIP-seq /fly-donors/ENCDO994RJT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41411/'], '@type': ['Target', 'Item'], 'name': 'Fer3-dmelanogaster', 'label': 'Fer3', '@id': '/targets/Fer3-dmelanogaster/', 'title': 'Fer3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e237e32f-1cf1-416f-b30f-daabb0db0004', 'status': 'released'} dm3 3R 7515118 7537896 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF528AMV/ 17775502 Kevin White, UChicago 857c01041a611022a8d2e2dce13384da https://www.encodeproject.org/files/ENCFF335LOC/@@download/ENCFF335LOC.bigWig released s3://encode-public/2018/09/19/5742d87e-cedc-4a9b-aa6f-f056074f99cb/ENCFF335LOC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF952ZXY fastq fastq reads ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF346UUT/ 1941800584 Michael Snyder, Stanford 444218ce7c73914bb9e6317ecc08617d SRA:SRR8660423 https://www.encodeproject.org/files/ENCFF952ZXY/@@download/ENCFF952ZXY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/28/46d7a702-9712-4c58-a548-0247b9cfd0df/ENCFF952ZXY.fastq.gz ENCFF346UUT fastq fastq reads ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF952ZXY/ 1895118252 Michael Snyder, Stanford fd3bda7d46864040c22efca8438659a3 SRA:SRR8660423 https://www.encodeproject.org/files/ENCFF346UUT/@@download/ENCFF346UUT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/28/eb2f0761-6817-4bf4-b7e8-b3275682a2e1/ENCFF346UUT.fastq.gz ENCFF234YTX bam bam unfiltered alignments hg19 ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF952ZXY/, /files/ENCFF346UUT/ 4184091668 ENCODE Processing Pipeline ed141d2d706156cf84c9214765d421cd https://www.encodeproject.org/files/ENCFF234YTX/@@download/ENCFF234YTX.bam released s3://encode-public/2016/11/25/b65918b1-b776-448d-8a6f-04ab09e9b087/ENCFF234YTX.bam ENCODE3 hg19 archived ENCFF378LVR bam bam unfiltered alignments GRCh38 ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF952ZXY/, /files/ENCFF346UUT/ 4190145803 ENCODE Processing Pipeline 4fec6b4911b96247d7a2f2cf942ca517 https://www.encodeproject.org/files/ENCFF378LVR/@@download/ENCFF378LVR.bam released s3://encode-public/2016/11/25/2b4e64d5-51f6-409b-8a78-341d9c96e22f/ENCFF378LVR.bam ENCODE3 GRCh38 archived ENCFF624QBC bam bam alignments hg19 ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF952ZXY/, /files/ENCFF346UUT/ 3482353619 ENCODE Processing Pipeline 8b4083754773d972b6498493f6f772db https://www.encodeproject.org/files/ENCFF624QBC/@@download/ENCFF624QBC.bam released s3://encode-public/2016/11/25/55fd7049-4fe9-4cb6-a324-8d07e02e124e/ENCFF624QBC.bam ENCODE3 hg19 archived ENCFF925ULD bam bam alignments GRCh38 ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF952ZXY/, /files/ENCFF346UUT/ 3489864577 ENCODE Processing Pipeline a4e1d39a543f4ab8a76b9d213e35b992 https://www.encodeproject.org/files/ENCFF925ULD/@@download/ENCFF925ULD.bam released s3://encode-public/2016/11/25/01e853df-4d2d-47b2-8289-67d552f0ffd3/ENCFF925ULD.bam ENCODE3 GRCh38 archived ENCFF974ALT bam bam unfiltered alignments GRCh38 ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF346UUT/, /files/ENCFF952ZXY/ 4182903549 ENCODE Processing Pipeline eaa10c5b6c494bf057ee1072a1277158 https://www.encodeproject.org/files/ENCFF974ALT/@@download/ENCFF974ALT.bam released s3://encode-public/2020/06/02/00ea4851-aa56-4b2d-802a-d2969f1f68d8/ENCFF974ALT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF572VCF bam bam alignments GRCh38 ENCSR903SJC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF346UUT/, /files/ENCFF952ZXY/ 3403742563 ENCODE Processing Pipeline f7e1899ae1c656842228be4af84da221 https://www.encodeproject.org/files/ENCFF572VCF/@@download/ENCFF572VCF.bam released s3://encode-public/2020/06/02/f823bab1-f544-4fc5-b1b2-922f6cbd7110/ENCFF572VCF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF298JGM fastq fastq reads ENCSR572WAD Control ChIP-seq /fly-donors/ENCDO794FKC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36813/'], '@type': ['Target', 'Item'], 'name': 'cato-dmelanogaster', 'label': 'cato', '@id': '/targets/cato-dmelanogaster/', 'title': 'cato (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '71857be4-ce8f-4632-bf51-f30f5846b92f', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 408848943 Kevin White, UChicago db6349b4532e17c1d992408638b7c227 https://www.encodeproject.org/files/ENCFF298JGM/@@download/ENCFF298JGM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/7f1ad6ec-64e4-44fa-bced-b52b61d93ece/ENCFF298JGM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF489OUP bam bam alignments dm3 ENCSR572WAD Control ChIP-seq /fly-donors/ENCDO794FKC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36813/'], '@type': ['Target', 'Item'], 'name': 'cato-dmelanogaster', 'label': 'cato', '@id': '/targets/cato-dmelanogaster/', 'title': 'cato (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '71857be4-ce8f-4632-bf51-f30f5846b92f', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 47 /files/ENCFF059UHX/, /files/ENCFF298JGM/ 494534082 Kevin White, UChicago ff58f1d130658ca33d365a86ba938cad https://www.encodeproject.org/files/ENCFF489OUP/@@download/ENCFF489OUP.bam released s3://encode-public/2016/04/11/ed599496-159f-4c4a-bd45-6e4c8ca19676/ENCFF489OUP.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF363KHW bam bam alignments dm6 ENCSR572WAD Control ChIP-seq /fly-donors/ENCDO794FKC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36813/'], '@type': ['Target', 'Item'], 'name': 'cato-dmelanogaster', 'label': 'cato', '@id': '/targets/cato-dmelanogaster/', 'title': 'cato (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '71857be4-ce8f-4632-bf51-f30f5846b92f', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF298JGM/ 501068976 Kevin White, UChicago 4b7b428c0afc01fb133cb56a9535aec4 https://www.encodeproject.org/files/ENCFF363KHW/@@download/ENCFF363KHW.bam released s3://encode-public/2016/04/20/188f320d-51db-414e-a849-949b03e5e469/ENCFF363KHW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF685BZG bigWig bigWig read-depth normalized signal dm3 ENCSR572WAD Control ChIP-seq /fly-donors/ENCDO794FKC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36813/'], '@type': ['Target', 'Item'], 'name': 'cato-dmelanogaster', 'label': 'cato', '@id': '/targets/cato-dmelanogaster/', 'title': 'cato (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '71857be4-ce8f-4632-bf51-f30f5846b92f', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF489OUP/ 15189962 Kevin White, UChicago 60683e068577ae840c8751d2a510d7d7 https://www.encodeproject.org/files/ENCFF685BZG/@@download/ENCFF685BZG.bigWig released s3://encode-public/2016/06/21/14dbdd06-3f9f-4056-908d-7b7920cffee6/ENCFF685BZG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF644UMU bigWig bigWig signal of unique reads dm6 ENCSR572WAD Control ChIP-seq /fly-donors/ENCDO794FKC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36813/'], '@type': ['Target', 'Item'], 'name': 'cato-dmelanogaster', 'label': 'cato', '@id': '/targets/cato-dmelanogaster/', 'title': 'cato (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '71857be4-ce8f-4632-bf51-f30f5846b92f', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF363KHW/ 17409472 Kevin White, UChicago 140045eb532fe9a4284a185e7e079dc3 https://www.encodeproject.org/files/ENCFF644UMU/@@download/ENCFF644UMU.bigWig released s3://encode-public/2016/06/21/9493b938-04e7-4b79-82db-657937b0f0aa/ENCFF644UMU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF997BNL bigWig bigWig read-depth normalized signal dm6 ENCSR572WAD Control ChIP-seq /fly-donors/ENCDO794FKC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36813/'], '@type': ['Target', 'Item'], 'name': 'cato-dmelanogaster', 'label': 'cato', '@id': '/targets/cato-dmelanogaster/', 'title': 'cato (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '71857be4-ce8f-4632-bf51-f30f5846b92f', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF363KHW/ 17276234 Kevin White, UChicago eb368bb64136bd15c7ebde0b659829d0 https://www.encodeproject.org/files/ENCFF997BNL/@@download/ENCFF997BNL.bigWig released s3://encode-public/2016/06/21/3620d09c-e092-4f54-912f-c59b73ee445c/ENCFF997BNL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF461REX bigWig bigWig signal of unique reads dm3 ENCSR572WAD Control ChIP-seq /fly-donors/ENCDO794FKC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36813/'], '@type': ['Target', 'Item'], 'name': 'cato-dmelanogaster', 'label': 'cato', '@id': '/targets/cato-dmelanogaster/', 'title': 'cato (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '71857be4-ce8f-4632-bf51-f30f5846b92f', 'status': 'released'} dm3 2R 12150687 12172348 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF489OUP/ 15285344 Kevin White, UChicago 5334fb1cdef5ab0c2b56196b6a02ca5b https://www.encodeproject.org/files/ENCFF461REX/@@download/ENCFF461REX.bigWig released s3://encode-public/2016/06/21/513578a6-90b9-403a-9c95-ce64247a6a36/ENCFF461REX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF144XQJ fastq fastq reads ENCSR325OBK Control ChIP-seq /fly-donors/ENCDO154GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31735/'], '@type': ['Target', 'Item'], 'name': 'CG2116-dmelanogaster', 'label': 'CG2116', '@id': '/targets/CG2116-dmelanogaster/', 'title': 'CG2116 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a00c1c42-4121-4f4a-8d25-c638b44d1cda', 'status': 'released'} dm3 X 8006549 8030705 DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 396429570 Kevin White, UChicago d33605ebf51c2e3833a3971a40dff875 https://www.encodeproject.org/files/ENCFF144XQJ/@@download/ENCFF144XQJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/97841a6c-c421-454e-a8d3-debd2244189e/ENCFF144XQJ.fastq.gz missing genetic modification characterization, missing biosample characterization missing documents ENCFF063TGW bam bam alignments dm6 ENCSR325OBK Control ChIP-seq /fly-donors/ENCDO154GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31735/'], '@type': ['Target', 'Item'], 'name': 'CG2116-dmelanogaster', 'label': 'CG2116', '@id': '/targets/CG2116-dmelanogaster/', 'title': 'CG2116 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a00c1c42-4121-4f4a-8d25-c638b44d1cda', 'status': 'released'} dm3 X 8006549 8030705 DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF144XQJ/, /files/ENCFF479RCH/ 473044518 Kevin White, UChicago f640b587795c51cb41bbef37fce960a5 https://www.encodeproject.org/files/ENCFF063TGW/@@download/ENCFF063TGW.bam released s3://encode-public/2017/01/03/c50590dd-9075-4c76-b613-70f0076d119c/ENCFF063TGW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization missing documents ENCFF611QSF bam bam alignments dm3 ENCSR325OBK Control ChIP-seq /fly-donors/ENCDO154GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31735/'], '@type': ['Target', 'Item'], 'name': 'CG2116-dmelanogaster', 'label': 'CG2116', '@id': '/targets/CG2116-dmelanogaster/', 'title': 'CG2116 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a00c1c42-4121-4f4a-8d25-c638b44d1cda', 'status': 'released'} dm3 X 8006549 8030705 DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF144XQJ/, /files/ENCFF059UHX/ 478859647 Kevin White, UChicago 038b25636ed080a9d765b28bb9b4d008 https://www.encodeproject.org/files/ENCFF611QSF/@@download/ENCFF611QSF.bam released s3://encode-public/2017/01/03/612c9f45-441f-4b15-8645-172df899e59c/ENCFF611QSF.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization missing documents ENCFF593TGV bigWig bigWig signal of unique reads dm3 ENCSR325OBK Control ChIP-seq /fly-donors/ENCDO154GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31735/'], '@type': ['Target', 'Item'], 'name': 'CG2116-dmelanogaster', 'label': 'CG2116', '@id': '/targets/CG2116-dmelanogaster/', 'title': 'CG2116 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a00c1c42-4121-4f4a-8d25-c638b44d1cda', 'status': 'released'} dm3 X 8006549 8030705 DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF611QSF/ 15167601 Kevin White, UChicago 1fd2258a4131cfb4563885c8ae7a7f49 https://www.encodeproject.org/files/ENCFF593TGV/@@download/ENCFF593TGV.bigWig released s3://encode-public/2017/01/03/4ad42fce-c462-4134-93ba-fb03c6a091f4/ENCFF593TGV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization missing documents ENCFF042WQD bigWig bigWig read-depth normalized signal dm3 ENCSR325OBK Control ChIP-seq /fly-donors/ENCDO154GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31735/'], '@type': ['Target', 'Item'], 'name': 'CG2116-dmelanogaster', 'label': 'CG2116', '@id': '/targets/CG2116-dmelanogaster/', 'title': 'CG2116 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a00c1c42-4121-4f4a-8d25-c638b44d1cda', 'status': 'released'} dm3 X 8006549 8030705 DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF611QSF/ 15146043 Kevin White, UChicago d1e06d499ecd23d9a80fd52073ab4d13 https://www.encodeproject.org/files/ENCFF042WQD/@@download/ENCFF042WQD.bigWig released s3://encode-public/2017/01/03/2cb54620-0c50-4cb2-befc-3fc86affee33/ENCFF042WQD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization missing documents ENCFF310BWO bigWig bigWig signal of unique reads dm6 ENCSR325OBK Control ChIP-seq /fly-donors/ENCDO154GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31735/'], '@type': ['Target', 'Item'], 'name': 'CG2116-dmelanogaster', 'label': 'CG2116', '@id': '/targets/CG2116-dmelanogaster/', 'title': 'CG2116 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a00c1c42-4121-4f4a-8d25-c638b44d1cda', 'status': 'released'} dm3 X 8006549 8030705 DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF063TGW/ 17257753 Kevin White, UChicago 2beccfbab8d9aaa62e944f7a19a0a0be https://www.encodeproject.org/files/ENCFF310BWO/@@download/ENCFF310BWO.bigWig released s3://encode-public/2017/01/04/90d58253-5020-4f41-afe1-773baaa57f73/ENCFF310BWO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization missing documents ENCFF699BBU bigWig bigWig read-depth normalized signal dm6 ENCSR325OBK Control ChIP-seq /fly-donors/ENCDO154GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31735/'], '@type': ['Target', 'Item'], 'name': 'CG2116-dmelanogaster', 'label': 'CG2116', '@id': '/targets/CG2116-dmelanogaster/', 'title': 'CG2116 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'a00c1c42-4121-4f4a-8d25-c638b44d1cda', 'status': 'released'} dm3 X 8006549 8030705 DNA 2017-12-13 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF063TGW/ 17221316 Kevin White, UChicago c61a9b097af405cf16fbe173f6fa124c https://www.encodeproject.org/files/ENCFF699BBU/@@download/ENCFF699BBU.bigWig released s3://encode-public/2017/01/04/735b81d5-a355-4185-8b86-0795ecdd5161/ENCFF699BBU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization missing documents ENCFF729FCZ fastq fastq reads ENCSR334ADQ Control ChIP-seq /worm-donors/ENCDO569IUL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176069/'], '@type': ['Target', 'Item'], 'name': 'ceh-13-celegans', 'label': 'ceh-13', '@id': '/targets/ceh-13-celegans/', 'title': 'ceh-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7112a604-6df2-4b90-b475-12861d0b6a26', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1201565813 Kevin White, UChicago e0cadb697ce699c8ace8d5ea792b7f1e https://www.encodeproject.org/files/ENCFF729FCZ/@@download/ENCFF729FCZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/395bb480-6e79-4430-919e-cc40c0c1c967/ENCFF729FCZ.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF531RAA bam bam alignments ce11 ENCSR334ADQ Control ChIP-seq /worm-donors/ENCDO569IUL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176069/'], '@type': ['Target', 'Item'], 'name': 'ceh-13-celegans', 'label': 'ceh-13', '@id': '/targets/ceh-13-celegans/', 'title': 'ceh-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7112a604-6df2-4b90-b475-12861d0b6a26', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF729FCZ/, /files/ENCFF586MOL/ 1560240560 Kevin White, UChicago c80faf36a848fc2f255028a2c02f2453 https://www.encodeproject.org/files/ENCFF531RAA/@@download/ENCFF531RAA.bam released s3://encode-public/2018/09/17/c8231bf9-a958-4623-8bbd-e5ecebf79c62/ENCFF531RAA.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF699YDR bigWig bigWig read-depth normalized signal ce11 ENCSR334ADQ Control ChIP-seq /worm-donors/ENCDO569IUL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176069/'], '@type': ['Target', 'Item'], 'name': 'ceh-13-celegans', 'label': 'ceh-13', '@id': '/targets/ceh-13-celegans/', 'title': 'ceh-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7112a604-6df2-4b90-b475-12861d0b6a26', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF531RAA/ 9914237 Kevin White, UChicago e150f88758035d370120618d24765c88 https://www.encodeproject.org/files/ENCFF699YDR/@@download/ENCFF699YDR.bigWig released s3://encode-public/2018/09/18/171717e2-3441-4863-ab1b-0f26ad52e669/ENCFF699YDR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF658AOQ bigWig bigWig signal of unique reads ce11 ENCSR334ADQ Control ChIP-seq /worm-donors/ENCDO569IUL/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176069/'], '@type': ['Target', 'Item'], 'name': 'ceh-13-celegans', 'label': 'ceh-13', '@id': '/targets/ceh-13-celegans/', 'title': 'ceh-13 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7112a604-6df2-4b90-b475-12861d0b6a26', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF531RAA/ 9951366 Kevin White, UChicago fed9b952463169129d70dd9a0d39800a https://www.encodeproject.org/files/ENCFF658AOQ/@@download/ENCFF658AOQ.bigWig released s3://encode-public/2018/09/18/a32acf69-9e8c-46ff-b111-76e555ad09ac/ENCFF658AOQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF360WDU fastq fastq reads ENCSR900PXV Control ChIP-seq /worm-donors/ENCDO383LNQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179819/'], '@type': ['Target', 'Item'], 'name': 'somi-1-celegans', 'label': 'somi-1', '@id': '/targets/somi-1-celegans/', 'title': 'somi-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a8f2f58b-7e1d-41ca-8987-e370595f69b8', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 875221839 Kevin White, UChicago e195f39df2e3aa2baaec3c2e0984fb5b https://www.encodeproject.org/files/ENCFF360WDU/@@download/ENCFF360WDU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/ccbcc730-20cc-40f3-9183-df6550ad890d/ENCFF360WDU.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF150ZUE bam bam alignments ce11 ENCSR900PXV Control ChIP-seq /worm-donors/ENCDO383LNQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179819/'], '@type': ['Target', 'Item'], 'name': 'somi-1-celegans', 'label': 'somi-1', '@id': '/targets/somi-1-celegans/', 'title': 'somi-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a8f2f58b-7e1d-41ca-8987-e370595f69b8', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF360WDU/, /files/ENCFF586MOL/ 1136499559 Kevin White, UChicago 074d154568444f06cb6a92ed7c895a83 https://www.encodeproject.org/files/ENCFF150ZUE/@@download/ENCFF150ZUE.bam released s3://encode-public/2018/09/17/46e65f68-4564-426f-810a-c4ec0bcc30f8/ENCFF150ZUE.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF624PXE bigWig bigWig signal of unique reads ce11 ENCSR900PXV Control ChIP-seq /worm-donors/ENCDO383LNQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179819/'], '@type': ['Target', 'Item'], 'name': 'somi-1-celegans', 'label': 'somi-1', '@id': '/targets/somi-1-celegans/', 'title': 'somi-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a8f2f58b-7e1d-41ca-8987-e370595f69b8', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF150ZUE/ 9973225 Kevin White, UChicago 7e34f413a900052929aeaf01adcabd30 https://www.encodeproject.org/files/ENCFF624PXE/@@download/ENCFF624PXE.bigWig released s3://encode-public/2018/09/18/785a4f51-a0b7-499d-b4de-00d8bb1944f6/ENCFF624PXE.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF331SJA bigWig bigWig read-depth normalized signal ce11 ENCSR900PXV Control ChIP-seq /worm-donors/ENCDO383LNQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179819/'], '@type': ['Target', 'Item'], 'name': 'somi-1-celegans', 'label': 'somi-1', '@id': '/targets/somi-1-celegans/', 'title': 'somi-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'a8f2f58b-7e1d-41ca-8987-e370595f69b8', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF150ZUE/ 10002548 Kevin White, UChicago 33bad9ba9582ca7ee46bf9d4b8351f78 https://www.encodeproject.org/files/ENCFF331SJA/@@download/ENCFF331SJA.bigWig released s3://encode-public/2018/09/18/b3240d93-7d04-48a6-8a94-729869b4d970/ENCFF331SJA.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF275XWP bam bam alignments dm3 ENCSR609JSK Control ChIP-seq /fly-donors/ENCDO555HOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44226/'], '@type': ['Target', 'Item'], 'name': 'Xbp1-dmelanogaster', 'label': 'Xbp1', '@id': '/targets/Xbp1-dmelanogaster/', 'title': 'Xbp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f77d58b2-1c5a-4427-8c10-8537419c5a0a', 'status': 'released'} dm3 2R 21132554 21155692 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF994ZHP/, /files/ENCFF059UHX/ 1307575702 Kevin White, UChicago 24d3893da8ed5562ce280cbbb00cb990 https://www.encodeproject.org/files/ENCFF275XWP/@@download/ENCFF275XWP.bam released s3://encode-public/2016/08/02/b1ceaabd-f197-4aaa-8af8-f43a87e55ed8/ENCFF275XWP.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF994ZHP fastq fastq reads ENCSR609JSK Control ChIP-seq /fly-donors/ENCDO555HOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44226/'], '@type': ['Target', 'Item'], 'name': 'Xbp1-dmelanogaster', 'label': 'Xbp1', '@id': '/targets/Xbp1-dmelanogaster/', 'title': 'Xbp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f77d58b2-1c5a-4427-8c10-8537419c5a0a', 'status': 'released'} dm3 2R 21132554 21155692 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1075189742 Kevin White, UChicago 13888f586c2baf140f30b7e71a27abce https://www.encodeproject.org/files/ENCFF994ZHP/@@download/ENCFF994ZHP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/02/323d5cd5-be5a-48bf-895d-a532732c84ca/ENCFF994ZHP.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF794OLY bam bam alignments dm6 ENCSR609JSK Control ChIP-seq /fly-donors/ENCDO555HOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44226/'], '@type': ['Target', 'Item'], 'name': 'Xbp1-dmelanogaster', 'label': 'Xbp1', '@id': '/targets/Xbp1-dmelanogaster/', 'title': 'Xbp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f77d58b2-1c5a-4427-8c10-8537419c5a0a', 'status': 'released'} dm3 2R 21132554 21155692 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF994ZHP/, /files/ENCFF479RCH/ 1299057734 Kevin White, UChicago 9c1110750408106c7ad355fd825481f5 https://www.encodeproject.org/files/ENCFF794OLY/@@download/ENCFF794OLY.bam released s3://encode-public/2016/08/04/75e02e92-6442-40eb-8bbf-c3055bb82583/ENCFF794OLY.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF346KIL bigWig bigWig read-depth normalized signal dm3 ENCSR609JSK Control ChIP-seq /fly-donors/ENCDO555HOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44226/'], '@type': ['Target', 'Item'], 'name': 'Xbp1-dmelanogaster', 'label': 'Xbp1', '@id': '/targets/Xbp1-dmelanogaster/', 'title': 'Xbp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f77d58b2-1c5a-4427-8c10-8537419c5a0a', 'status': 'released'} dm3 2R 21132554 21155692 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF275XWP/ 15422418 Kevin White, UChicago 22f7407cb2b867f1483a88f50c1205a6 https://www.encodeproject.org/files/ENCFF346KIL/@@download/ENCFF346KIL.bigWig released s3://encode-public/2016/08/04/560b5a7c-965b-4aa3-b4b1-9b0a79988387/ENCFF346KIL.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF118MWJ bigWig bigWig signal of unique reads dm3 ENCSR609JSK Control ChIP-seq /fly-donors/ENCDO555HOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44226/'], '@type': ['Target', 'Item'], 'name': 'Xbp1-dmelanogaster', 'label': 'Xbp1', '@id': '/targets/Xbp1-dmelanogaster/', 'title': 'Xbp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f77d58b2-1c5a-4427-8c10-8537419c5a0a', 'status': 'released'} dm3 2R 21132554 21155692 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF275XWP/ 15394270 Kevin White, UChicago 8c22b2cba9e6a0cd67db341d9c8e1793 https://www.encodeproject.org/files/ENCFF118MWJ/@@download/ENCFF118MWJ.bigWig released s3://encode-public/2016/08/04/5d5bbd8b-12fe-43d1-9e7b-5bcee4d64656/ENCFF118MWJ.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF386UPP bigWig bigWig read-depth normalized signal dm6 ENCSR609JSK Control ChIP-seq /fly-donors/ENCDO555HOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44226/'], '@type': ['Target', 'Item'], 'name': 'Xbp1-dmelanogaster', 'label': 'Xbp1', '@id': '/targets/Xbp1-dmelanogaster/', 'title': 'Xbp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f77d58b2-1c5a-4427-8c10-8537419c5a0a', 'status': 'released'} dm3 2R 21132554 21155692 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF794OLY/ 17474297 Kevin White, UChicago a9a4440c3bf8f63428e289106afa72f0 https://www.encodeproject.org/files/ENCFF386UPP/@@download/ENCFF386UPP.bigWig released s3://encode-public/2016/08/04/1e148a48-6402-4a0f-a15d-57b15c3d8b63/ENCFF386UPP.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF939RIX bigWig bigWig signal of unique reads dm6 ENCSR609JSK Control ChIP-seq /fly-donors/ENCDO555HOX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44226/'], '@type': ['Target', 'Item'], 'name': 'Xbp1-dmelanogaster', 'label': 'Xbp1', '@id': '/targets/Xbp1-dmelanogaster/', 'title': 'Xbp1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f77d58b2-1c5a-4427-8c10-8537419c5a0a', 'status': 'released'} dm3 2R 21132554 21155692 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF794OLY/ 17422767 Kevin White, UChicago 2890a021065d1da52b3c8e520f89f483 https://www.encodeproject.org/files/ENCFF939RIX/@@download/ENCFF939RIX.bigWig released s3://encode-public/2016/08/04/6585a3e6-495c-4c07-973d-5de721eac443/ENCFF939RIX.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF550VPF fastq fastq reads ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF424UYB/ 2915997490 Richard Myers, HAIB e0ff92cd42174f844838395fe6bd4c92 SRA:SRR6214392 https://www.encodeproject.org/files/ENCFF550VPF/@@download/ENCFF550VPF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/a8a09605-7d84-421b-ab94-4b9078cbbb1e/ENCFF550VPF.fastq.gz ENCFF424UYB fastq fastq reads ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF550VPF/ 2790082045 Richard Myers, HAIB 36c487ff4b7cd2aaf8cf51c975bb8682 SRA:SRR6214392 https://www.encodeproject.org/files/ENCFF424UYB/@@download/ENCFF424UYB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/5731d66b-7ba1-4191-a187-2a9ae56c916e/ENCFF424UYB.fastq.gz ENCFF908NWF bam bam unfiltered alignments GRCh38 ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF424UYB/, /files/ENCFF643CGH/, /files/ENCFF550VPF/ 6824980229 ENCODE Processing Pipeline 57763d3f9426810a9d3f48295750e896 https://www.encodeproject.org/files/ENCFF908NWF/@@download/ENCFF908NWF.bam released s3://encode-public/2016/11/08/1a72f4e0-479b-4ece-ad16-8d5606513e3b/ENCFF908NWF.bam ENCODE3 GRCh38 archived ENCFF627BUF bam bam unfiltered alignments hg19 ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF424UYB/, /files/ENCFF807MUK/, /files/ENCFF550VPF/ 6796860456 ENCODE Processing Pipeline 7776358ac6cde284fd6da8356ffa5e7e https://www.encodeproject.org/files/ENCFF627BUF/@@download/ENCFF627BUF.bam released s3://encode-public/2016/11/08/baa0fdcf-c4e8-4a0c-b3a8-9d06b500b969/ENCFF627BUF.bam ENCODE3 hg19 archived ENCFF724YUP bam bam alignments hg19 ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF424UYB/, /files/ENCFF807MUK/, /files/ENCFF550VPF/ 4891938224 ENCODE Processing Pipeline 3f4ad09422cd1b1be52812f7d85aa5fc https://www.encodeproject.org/files/ENCFF724YUP/@@download/ENCFF724YUP.bam released s3://encode-public/2016/11/08/bc48d189-eba0-4f87-929f-bcb61b03ea61/ENCFF724YUP.bam ENCODE3 hg19 archived ENCFF238HZC bam bam alignments GRCh38 ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF424UYB/, /files/ENCFF643CGH/, /files/ENCFF550VPF/ 4898806671 ENCODE Processing Pipeline 5d9485bbf24b77cd6623cacc0505d770 https://www.encodeproject.org/files/ENCFF238HZC/@@download/ENCFF238HZC.bam released s3://encode-public/2016/11/08/8d808269-a762-4cf9-be6b-59dee6b3a4ef/ENCFF238HZC.bam ENCODE3 GRCh38 archived ENCFF215DES bam bam unfiltered alignments GRCh38 ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF424UYB/, /files/ENCFF550VPF/ 6820208770 ENCODE Processing Pipeline 78082719050072c71cb3ee0af2cf86db https://www.encodeproject.org/files/ENCFF215DES/@@download/ENCFF215DES.bam released s3://encode-public/2020/06/06/698ca721-a6ab-4124-a23f-41ac15cb25fa/ENCFF215DES.bam ENCODE4 v1.4.0 GRCh38 released ENCFF466OUB bam bam alignments GRCh38 ENCSR890ONE Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF424UYB/, /files/ENCFF550VPF/ 4650690336 ENCODE Processing Pipeline feed533390b9e86f578da63c625a7bd1 https://www.encodeproject.org/files/ENCFF466OUB/@@download/ENCFF466OUB.bam released s3://encode-public/2020/06/06/ed59c68a-446d-453a-b551-b9dc06fae3c1/ENCFF466OUB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF648JGD fastq fastq reads ENCSR662CJH Control ChIP-seq /worm-donors/ENCDO595BYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179399/'], '@type': ['Target', 'Item'], 'name': 'F57A8.1-celegans', 'label': 'F57A8.1', '@id': '/targets/F57A8.1-celegans/', 'title': 'F57A8.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '885b74ff-2c1f-4394-80d2-ce99a5695e9d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1177710669 Kevin White, UChicago 694f7c16f024d31378a17559d131805f https://www.encodeproject.org/files/ENCFF648JGD/@@download/ENCFF648JGD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/09/17/86572f6c-2bae-4618-b9bb-8da7cedc6d69/ENCFF648JGD.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF937GLI bam bam alignments ce11 ENCSR662CJH Control ChIP-seq /worm-donors/ENCDO595BYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179399/'], '@type': ['Target', 'Item'], 'name': 'F57A8.1-celegans', 'label': 'F57A8.1', '@id': '/targets/F57A8.1-celegans/', 'title': 'F57A8.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '885b74ff-2c1f-4394-80d2-ce99a5695e9d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF648JGD/, /files/ENCFF586MOL/ 1539207412 Kevin White, UChicago c60be7efc5c48b333ce495d1b7dd8c4b https://www.encodeproject.org/files/ENCFF937GLI/@@download/ENCFF937GLI.bam released s3://encode-public/2018/09/17/6c9e4c09-6eb4-47f5-86c2-4995534dd536/ENCFF937GLI.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF191DHB bigWig bigWig read-depth normalized signal ce11 ENCSR662CJH Control ChIP-seq /worm-donors/ENCDO595BYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179399/'], '@type': ['Target', 'Item'], 'name': 'F57A8.1-celegans', 'label': 'F57A8.1', '@id': '/targets/F57A8.1-celegans/', 'title': 'F57A8.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '885b74ff-2c1f-4394-80d2-ce99a5695e9d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF937GLI/ 9915188 Kevin White, UChicago e3a15648794709acaae25bc1781a40d2 https://www.encodeproject.org/files/ENCFF191DHB/@@download/ENCFF191DHB.bigWig released s3://encode-public/2018/09/18/0ef42deb-54da-47db-8986-20c28e080fae/ENCFF191DHB.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF552INR bigWig bigWig signal of unique reads ce11 ENCSR662CJH Control ChIP-seq /worm-donors/ENCDO595BYQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179399/'], '@type': ['Target', 'Item'], 'name': 'F57A8.1-celegans', 'label': 'F57A8.1', '@id': '/targets/F57A8.1-celegans/', 'title': 'F57A8.1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '885b74ff-2c1f-4394-80d2-ce99a5695e9d', 'status': 'released'} DNA 2018-09-19 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF937GLI/ 9957537 Kevin White, UChicago d582178b64b9e713b4e89f38fbbca40b https://www.encodeproject.org/files/ENCFF552INR/@@download/ENCFF552INR.bigWig released s3://encode-public/2018/09/18/9496907b-18b5-4b60-86ed-e15a7aede949/ENCFF552INR.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF579GVQ fastq fastq reads ENCSR641VHQ Control ChIP-seq /fly-donors/ENCDO536TIT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35682/'], '@type': ['Target', 'Item'], 'name': 'az2-dmelanogaster', 'label': 'az2', '@id': '/targets/az2-dmelanogaster/', 'title': 'az2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f57d50da-f073-4976-bb36-319a526bda62', 'status': 'released'} dm3 2R 7500211 7521772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 927765237 Kevin White, UChicago e6c831c68ad628280faa721ea6868ffe https://www.encodeproject.org/files/ENCFF579GVQ/@@download/ENCFF579GVQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/02/ad61d084-1e78-469e-a2b9-2807ad5a1675/ENCFF579GVQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF462LNZ bam bam alignments dm3 ENCSR641VHQ Control ChIP-seq /fly-donors/ENCDO536TIT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35682/'], '@type': ['Target', 'Item'], 'name': 'az2-dmelanogaster', 'label': 'az2', '@id': '/targets/az2-dmelanogaster/', 'title': 'az2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f57d50da-f073-4976-bb36-319a526bda62', 'status': 'released'} dm3 2R 7500211 7521772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF579GVQ/, /files/ENCFF059UHX/ 1123717853 Kevin White, UChicago b601b6b3312f96324bbb42e857ad2338 https://www.encodeproject.org/files/ENCFF462LNZ/@@download/ENCFF462LNZ.bam released s3://encode-public/2016/08/02/628546f4-db01-403e-8313-b1947dd85c1a/ENCFF462LNZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF934OIX bam bam alignments dm6 ENCSR641VHQ Control ChIP-seq /fly-donors/ENCDO536TIT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35682/'], '@type': ['Target', 'Item'], 'name': 'az2-dmelanogaster', 'label': 'az2', '@id': '/targets/az2-dmelanogaster/', 'title': 'az2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f57d50da-f073-4976-bb36-319a526bda62', 'status': 'released'} dm3 2R 7500211 7521772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF579GVQ/, /files/ENCFF479RCH/ 1117364995 Kevin White, UChicago 33efd5df053913b841e7a374146cd55c https://www.encodeproject.org/files/ENCFF934OIX/@@download/ENCFF934OIX.bam released s3://encode-public/2016/08/04/bb3bb73d-ffc2-4cec-922b-95abe4785c53/ENCFF934OIX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF021IGA bigWig bigWig read-depth normalized signal dm3 ENCSR641VHQ Control ChIP-seq /fly-donors/ENCDO536TIT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35682/'], '@type': ['Target', 'Item'], 'name': 'az2-dmelanogaster', 'label': 'az2', '@id': '/targets/az2-dmelanogaster/', 'title': 'az2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f57d50da-f073-4976-bb36-319a526bda62', 'status': 'released'} dm3 2R 7500211 7521772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF462LNZ/ 15346794 Kevin White, UChicago fa51de2001415496067eb8106d8b66f8 https://www.encodeproject.org/files/ENCFF021IGA/@@download/ENCFF021IGA.bigWig released s3://encode-public/2016/08/04/e9f716bc-4b70-4f53-9ffa-c715a54f9941/ENCFF021IGA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF055URZ bigWig bigWig read-depth normalized signal dm6 ENCSR641VHQ Control ChIP-seq /fly-donors/ENCDO536TIT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35682/'], '@type': ['Target', 'Item'], 'name': 'az2-dmelanogaster', 'label': 'az2', '@id': '/targets/az2-dmelanogaster/', 'title': 'az2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f57d50da-f073-4976-bb36-319a526bda62', 'status': 'released'} dm3 2R 7500211 7521772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF934OIX/ 17394147 Kevin White, UChicago 4df7c402593fb3b561a773be3acbdba7 https://www.encodeproject.org/files/ENCFF055URZ/@@download/ENCFF055URZ.bigWig released s3://encode-public/2016/08/04/eb0ca274-1413-46d7-86b1-900e3ed5a5e6/ENCFF055URZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF766HHW bigWig bigWig signal of unique reads dm6 ENCSR641VHQ Control ChIP-seq /fly-donors/ENCDO536TIT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35682/'], '@type': ['Target', 'Item'], 'name': 'az2-dmelanogaster', 'label': 'az2', '@id': '/targets/az2-dmelanogaster/', 'title': 'az2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f57d50da-f073-4976-bb36-319a526bda62', 'status': 'released'} dm3 2R 7500211 7521772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF934OIX/ 17400958 Kevin White, UChicago c656b80a4ac4227cf780b5b6b2aeb0f2 https://www.encodeproject.org/files/ENCFF766HHW/@@download/ENCFF766HHW.bigWig released s3://encode-public/2016/08/04/35eddab3-a906-48c0-a528-d49ab9d1a5b5/ENCFF766HHW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF871FEK bigWig bigWig signal of unique reads dm3 ENCSR641VHQ Control ChIP-seq /fly-donors/ENCDO536TIT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35682/'], '@type': ['Target', 'Item'], 'name': 'az2-dmelanogaster', 'label': 'az2', '@id': '/targets/az2-dmelanogaster/', 'title': 'az2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f57d50da-f073-4976-bb36-319a526bda62', 'status': 'released'} dm3 2R 7500211 7521772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF462LNZ/ 15352472 Kevin White, UChicago fef41afdcd55d3e2123ca5122e34a3c7 https://www.encodeproject.org/files/ENCFF871FEK/@@download/ENCFF871FEK.bigWig released s3://encode-public/2016/08/04/26007024-98c7-4f94-81a9-741eea6ccd20/ENCFF871FEK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF023MBN fastq fastq reads ENCSR803QSF Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1117509819 Kevin White, UChicago ea3673c0bb317bcc1e6daa8213667a90 https://www.encodeproject.org/files/ENCFF023MBN/@@download/ENCFF023MBN.fastq.gz Illumina HiSeq 4000 /files/ENCFF279NGQ/ released s3://encode-public/2018/09/18/a70afca9-ea4b-44a6-aac2-7372ee065453/ENCFF023MBN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF827NUF bam bam alignments dm6 ENCSR803QSF Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF023MBN/, /files/ENCFF479RCH/ 1494934681 Kevin White, UChicago c7b887edb9854ba08eeb1c7d7dac2de0 https://www.encodeproject.org/files/ENCFF827NUF/@@download/ENCFF827NUF.bam released s3://encode-public/2018/09/19/d29d9745-8aac-4349-b117-661d11cd24e8/ENCFF827NUF.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF279VBQ bigWig bigWig signal of unique reads dm6 ENCSR803QSF Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF827NUF/ 17793580 Kevin White, UChicago 1baa0b928a9eade16ab0358f67767dd7 https://www.encodeproject.org/files/ENCFF279VBQ/@@download/ENCFF279VBQ.bigWig released s3://encode-public/2018/09/19/30d7717f-dda3-4d2b-842a-6daeda1a9188/ENCFF279VBQ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF642VAK bigWig bigWig read-depth normalized signal dm6 ENCSR803QSF Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF827NUF/ 17748909 Kevin White, UChicago 6b6b1ddfb16c5054cd5799f7c86df222 https://www.encodeproject.org/files/ENCFF642VAK/@@download/ENCFF642VAK.bigWig released s3://encode-public/2018/09/19/1d80e248-52f0-4bbe-ac2e-0e442d7b9af0/ENCFF642VAK.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF676RQG fastq fastq reads ENCSR635FXZ Control ChIP-seq /fly-donors/ENCDO530IVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/246595/'], '@type': ['Target', 'Item'], 'name': 'CG30403-dmelanogaster', 'label': 'CG30403', '@id': '/targets/CG30403-dmelanogaster/', 'title': 'CG30403 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e52986c3-ede3-4819-bfe8-20c73d2796f4', 'status': 'released'} dm3 2R 17585333 17603772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 689017570 Kevin White, UChicago 59170efcd1754211d245bcf85b9ecf42 https://www.encodeproject.org/files/ENCFF676RQG/@@download/ENCFF676RQG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/b74034ab-ecf8-45b6-972c-7c2a0d87bc7d/ENCFF676RQG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF785ESV bam bam alignments dm3 ENCSR635FXZ Control ChIP-seq /fly-donors/ENCDO530IVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/246595/'], '@type': ['Target', 'Item'], 'name': 'CG30403-dmelanogaster', 'label': 'CG30403', '@id': '/targets/CG30403-dmelanogaster/', 'title': 'CG30403 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e52986c3-ede3-4819-bfe8-20c73d2796f4', 'status': 'released'} dm3 2R 17585333 17603772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF676RQG/, /files/ENCFF059UHX/ 838094521 Kevin White, UChicago 0d4a7e723d3442606e10716562b9e527 https://www.encodeproject.org/files/ENCFF785ESV/@@download/ENCFF785ESV.bam released s3://encode-public/2016/08/03/102c0335-dfe5-47f2-b387-a9d0d5132e1c/ENCFF785ESV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF100TYJ bigWig bigWig signal of unique reads dm3 ENCSR635FXZ Control ChIP-seq /fly-donors/ENCDO530IVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/246595/'], '@type': ['Target', 'Item'], 'name': 'CG30403-dmelanogaster', 'label': 'CG30403', '@id': '/targets/CG30403-dmelanogaster/', 'title': 'CG30403 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e52986c3-ede3-4819-bfe8-20c73d2796f4', 'status': 'released'} dm3 2R 17585333 17603772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF785ESV/ 15335062 Kevin White, UChicago c473e8b9966d09f49413e7d0beb04a86 https://www.encodeproject.org/files/ENCFF100TYJ/@@download/ENCFF100TYJ.bigWig released s3://encode-public/2016/08/04/ed83be3f-1413-4075-ad23-f918cb9f192b/ENCFF100TYJ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF997AMQ bigWig bigWig read-depth normalized signal dm3 ENCSR635FXZ Control ChIP-seq /fly-donors/ENCDO530IVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/246595/'], '@type': ['Target', 'Item'], 'name': 'CG30403-dmelanogaster', 'label': 'CG30403', '@id': '/targets/CG30403-dmelanogaster/', 'title': 'CG30403 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e52986c3-ede3-4819-bfe8-20c73d2796f4', 'status': 'released'} dm3 2R 17585333 17603772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF785ESV/ 15393123 Kevin White, UChicago a58e75f4e91b0fcd4e83a080fde0b308 https://www.encodeproject.org/files/ENCFF997AMQ/@@download/ENCFF997AMQ.bigWig released s3://encode-public/2016/08/04/987c6840-8d72-405a-8c11-92e7b9fe2245/ENCFF997AMQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF795SZU bigWig bigWig signal of unique reads dm6 ENCSR635FXZ Control ChIP-seq /fly-donors/ENCDO530IVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/246595/'], '@type': ['Target', 'Item'], 'name': 'CG30403-dmelanogaster', 'label': 'CG30403', '@id': '/targets/CG30403-dmelanogaster/', 'title': 'CG30403 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e52986c3-ede3-4819-bfe8-20c73d2796f4', 'status': 'released'} dm3 2R 17585333 17603772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF257LCL/ 17400477 Kevin White, UChicago 2f03e5050edbf5da14ef3451664cbd34 https://www.encodeproject.org/files/ENCFF795SZU/@@download/ENCFF795SZU.bigWig released s3://encode-public/2016/08/05/0fbd9c75-7ab0-4d7c-8e4d-e23875c57e7a/ENCFF795SZU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF257LCL bam bam alignments dm6 ENCSR635FXZ Control ChIP-seq /fly-donors/ENCDO530IVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/246595/'], '@type': ['Target', 'Item'], 'name': 'CG30403-dmelanogaster', 'label': 'CG30403', '@id': '/targets/CG30403-dmelanogaster/', 'title': 'CG30403 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e52986c3-ede3-4819-bfe8-20c73d2796f4', 'status': 'released'} dm3 2R 17585333 17603772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF676RQG/, /files/ENCFF479RCH/ 833593598 Kevin White, UChicago 5c58741b97136adc6c18f8ff460f7423 https://www.encodeproject.org/files/ENCFF257LCL/@@download/ENCFF257LCL.bam released s3://encode-public/2016/08/05/41f6b778-dcfc-411c-86b9-5510af2c8096/ENCFF257LCL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF692CTO bigWig bigWig read-depth normalized signal dm6 ENCSR635FXZ Control ChIP-seq /fly-donors/ENCDO530IVC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/246595/'], '@type': ['Target', 'Item'], 'name': 'CG30403-dmelanogaster', 'label': 'CG30403', '@id': '/targets/CG30403-dmelanogaster/', 'title': 'CG30403 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e52986c3-ede3-4819-bfe8-20c73d2796f4', 'status': 'released'} dm3 2R 17585333 17603772 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF257LCL/ 17469120 Kevin White, UChicago 4d244382ef1bf44aea7d2d3f508e0d35 https://www.encodeproject.org/files/ENCFF692CTO/@@download/ENCFF692CTO.bigWig released s3://encode-public/2016/08/05/716a4163-2153-4027-be24-b543ab26efc3/ENCFF692CTO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF493CZE fastq fastq reads ENCSR013WUH Control ChIP-seq /fly-donors/ENCDO206BTN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34569/'], '@type': ['Target', 'Item'], 'name': 'salm-dmelanogaster', 'label': 'salm', '@id': '/targets/salm-dmelanogaster/', 'title': 'salm (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2925d2f2-acea-4883-bf46-76a3647a946b', 'status': 'released'} dm3 2L 11413368 11497641 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 821103729 Kevin White, UChicago d9ae18a6bd9672d742b76328b27e9f64 https://www.encodeproject.org/files/ENCFF493CZE/@@download/ENCFF493CZE.fastq.gz Illumina HiSeq 4000 /files/ENCFF795BNL/ released s3://encode-public/2018/09/18/322541f1-d9b8-45ef-8d4d-7bb2c4696c35/ENCFF493CZE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF904DJE bam bam alignments dm6 ENCSR013WUH Control ChIP-seq /fly-donors/ENCDO206BTN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34569/'], '@type': ['Target', 'Item'], 'name': 'salm-dmelanogaster', 'label': 'salm', '@id': '/targets/salm-dmelanogaster/', 'title': 'salm (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2925d2f2-acea-4883-bf46-76a3647a946b', 'status': 'released'} dm3 2L 11413368 11497641 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF493CZE/, /files/ENCFF479RCH/ 1079240790 Kevin White, UChicago 9d3d051d0551f403b27add3eaaf00624 https://www.encodeproject.org/files/ENCFF904DJE/@@download/ENCFF904DJE.bam released s3://encode-public/2018/09/19/530f3890-7109-4d45-a7f1-d813117cba5c/ENCFF904DJE.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF379NOG bigWig bigWig signal of unique reads dm6 ENCSR013WUH Control ChIP-seq /fly-donors/ENCDO206BTN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34569/'], '@type': ['Target', 'Item'], 'name': 'salm-dmelanogaster', 'label': 'salm', '@id': '/targets/salm-dmelanogaster/', 'title': 'salm (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2925d2f2-acea-4883-bf46-76a3647a946b', 'status': 'released'} dm3 2L 11413368 11497641 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF904DJE/ 17579524 Kevin White, UChicago af59857a386d0d8378b2c4b99a343c2b https://www.encodeproject.org/files/ENCFF379NOG/@@download/ENCFF379NOG.bigWig released s3://encode-public/2018/09/19/3491bf4b-6ff9-452e-a406-2503d982d4a6/ENCFF379NOG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF006RLY bigWig bigWig read-depth normalized signal dm6 ENCSR013WUH Control ChIP-seq /fly-donors/ENCDO206BTN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34569/'], '@type': ['Target', 'Item'], 'name': 'salm-dmelanogaster', 'label': 'salm', '@id': '/targets/salm-dmelanogaster/', 'title': 'salm (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '2925d2f2-acea-4883-bf46-76a3647a946b', 'status': 'released'} dm3 2L 11413368 11497641 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF904DJE/ 17598541 Kevin White, UChicago f65cf125840b4bfced231eaf62bb6028 https://www.encodeproject.org/files/ENCFF006RLY/@@download/ENCFF006RLY.bigWig released s3://encode-public/2018/09/19/b31eae04-2e83-452e-8419-0e1c99b0dd12/ENCFF006RLY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF030YGI fastq fastq reads ENCSR278WHS Control ChIP-seq /fly-donors/ENCDO016HTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} dm3 2R 8219815 8240986 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 937814404 Kevin White, UChicago 326f63d96ff968bfca699d4d2be3b6b9 https://www.encodeproject.org/files/ENCFF030YGI/@@download/ENCFF030YGI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/12/7c4f0c0c-034c-424f-bd39-8edc10941223/ENCFF030YGI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF703KVY bigWig bigWig signal of unique reads dm3 ENCSR278WHS Control ChIP-seq /fly-donors/ENCDO016HTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} dm3 2R 8219815 8240986 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714HKJ/ 15351479 Kevin White, UChicago f2665177ef78fc7c4b421fc66546f181 https://www.encodeproject.org/files/ENCFF703KVY/@@download/ENCFF703KVY.bigWig released s3://encode-public/2016/08/12/e7f5caf2-e9e4-4693-8b88-8bf90d18d1d2/ENCFF703KVY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF714HKJ bam bam alignments dm3 ENCSR278WHS Control ChIP-seq /fly-donors/ENCDO016HTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} dm3 2R 8219815 8240986 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF030YGI/, /files/ENCFF059UHX/ 1136177812 Kevin White, UChicago e008b3d7aaeb2afc224cd911b3049b93 https://www.encodeproject.org/files/ENCFF714HKJ/@@download/ENCFF714HKJ.bam released s3://encode-public/2016/08/12/a723caf0-25cd-470b-829a-03abe39eedf8/ENCFF714HKJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF736PTC bam bam alignments dm6 ENCSR278WHS Control ChIP-seq /fly-donors/ENCDO016HTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} dm3 2R 8219815 8240986 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF030YGI/, /files/ENCFF479RCH/ 1131537612 Kevin White, UChicago 5a014e93e5f28af70c1a803a85125ac1 https://www.encodeproject.org/files/ENCFF736PTC/@@download/ENCFF736PTC.bam released s3://encode-public/2016/08/12/ef42d0bb-c0d5-464b-8878-0adedaa6b0f1/ENCFF736PTC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF893GWW bigWig bigWig read-depth normalized signal dm3 ENCSR278WHS Control ChIP-seq /fly-donors/ENCDO016HTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} dm3 2R 8219815 8240986 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF714HKJ/ 15355834 Kevin White, UChicago 4cbeb8cd1184781c7f1514a19f596120 https://www.encodeproject.org/files/ENCFF893GWW/@@download/ENCFF893GWW.bigWig released s3://encode-public/2016/08/12/e17a8a0f-0d95-4753-8028-de19f8a8ff40/ENCFF893GWW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF490CGP bigWig bigWig signal of unique reads dm6 ENCSR278WHS Control ChIP-seq /fly-donors/ENCDO016HTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} dm3 2R 8219815 8240986 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF736PTC/ 17414664 Kevin White, UChicago 76375ab03daf3696646d101d04d92077 https://www.encodeproject.org/files/ENCFF490CGP/@@download/ENCFF490CGP.bigWig released s3://encode-public/2016/08/12/f5e9a7ec-3af2-416a-b02b-af8c1dfc9c6a/ENCFF490CGP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF388YPK bigWig bigWig read-depth normalized signal dm6 ENCSR278WHS Control ChIP-seq /fly-donors/ENCDO016HTK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35800/'], '@type': ['Target', 'Item'], 'name': 'dpn-dmelanogaster', 'label': 'dpn', '@id': '/targets/dpn-dmelanogaster/', 'title': 'dpn (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c0dfc099-8706-4c34-a8b9-90d0b354df1f', 'status': 'released'} dm3 2R 8219815 8240986 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF736PTC/ 17418100 Kevin White, UChicago ff8f2fa65bdeb3776e0848fb27f07386 https://www.encodeproject.org/files/ENCFF388YPK/@@download/ENCFF388YPK.bigWig released s3://encode-public/2016/08/12/354b08a9-39dc-4ae5-ae3e-0c14f29d5aa8/ENCFF388YPK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF534SCD fastq fastq reads ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF184SBV/ 2372956386 Michael Snyder, Stanford c6758dbee8b201303de757be0437d824 SRA:SRR5111658 https://www.encodeproject.org/files/ENCFF534SCD/@@download/ENCFF534SCD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/faf920f0-7672-4c39-8e09-279e4b80fdde/ENCFF534SCD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF184SBV fastq fastq reads ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF534SCD/ 2410037497 Michael Snyder, Stanford 00a261a25eec9f44139ff17835343016 SRA:SRR5111658 https://www.encodeproject.org/files/ENCFF184SBV/@@download/ENCFF184SBV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/0ae2ebeb-0332-4d71-bdf8-3bb0108e54d3/ENCFF184SBV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF862XLE bam bam unfiltered alignments GRCh38 ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF184SBV/, /files/ENCFF534SCD/ 4895183388 ENCODE Processing Pipeline 012801346c4301a49b25c4e2e0dbca4c https://www.encodeproject.org/files/ENCFF862XLE/@@download/ENCFF862XLE.bam released s3://encode-public/2016/09/11/26f59133-694b-4fd8-bf6d-7b7b5ba00066/ENCFF862XLE.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF075QQT bam bam unfiltered alignments hg19 ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF184SBV/, /files/ENCFF534SCD/ 4889525294 ENCODE Processing Pipeline ba57dbaaf7eeb4fe4f62e73d95db2ba7 https://www.encodeproject.org/files/ENCFF075QQT/@@download/ENCFF075QQT.bam released s3://encode-public/2016/09/11/773869c4-5b44-41c6-9916-dd532c5ed1f0/ENCFF075QQT.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF326ODM bam bam alignments hg19 ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF184SBV/, /files/ENCFF534SCD/ 4168148090 ENCODE Processing Pipeline e6c34230a68fce0ab0ceb9e51b0c2453 https://www.encodeproject.org/files/ENCFF326ODM/@@download/ENCFF326ODM.bam released s3://encode-public/2016/09/11/d13a0ede-2a52-4802-86c2-aed60b6265dc/ENCFF326ODM.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF624LCZ bam bam alignments GRCh38 ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF184SBV/, /files/ENCFF534SCD/ 4169064788 ENCODE Processing Pipeline 531ff4eec44f8135e27e5023a9de6e86 https://www.encodeproject.org/files/ENCFF624LCZ/@@download/ENCFF624LCZ.bam released s3://encode-public/2016/09/11/2d499eec-6b11-4587-bc6b-831e62df8b82/ENCFF624LCZ.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF228FCA bam bam unfiltered alignments GRCh38 ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF534SCD/, /files/ENCFF184SBV/ 4956447894 ENCODE Processing Pipeline d0619a33dea78f954d320e5c3f2f5885 https://www.encodeproject.org/files/ENCFF228FCA/@@download/ENCFF228FCA.bam released s3://encode-public/2020/06/02/716a8ec6-262d-4e30-b2ae-dfc8d88c2c6a/ENCFF228FCA.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF500XPF bam bam alignments GRCh38 ENCSR468NLK Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1571'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7718/'], '@type': ['Target', 'Item'], 'name': 'ZNF165-human', 'label': 'ZNF165', '@id': '/targets/ZNF165-human/', 'title': 'ZNF165 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9fd0a7a7-d522-4821-a4a4-b8f90be19c3d', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF534SCD/, /files/ENCFF184SBV/ 4206923422 ENCODE Processing Pipeline 6aeea1fea9c4ec063c9397da86f5ac71 https://www.encodeproject.org/files/ENCFF500XPF/@@download/ENCFF500XPF.bam released s3://encode-public/2020/06/02/ba4b2b08-b2ef-4411-a924-a02590759f86/ENCFF500XPF.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF592WLT fastq fastq reads ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF914YKE/ 3280893809 Michael Snyder, Stanford 9d9fc79a3c402a52eaf84eae93f054c9 SRA:SRR6213656 https://www.encodeproject.org/files/ENCFF592WLT/@@download/ENCFF592WLT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/9687558d-f641-4fc7-b91f-828f926871ec/ENCFF592WLT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF914YKE fastq fastq reads ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF592WLT/ 2753967793 Michael Snyder, Stanford 90109d1d6f4a899fbae9908cf55a24e0 SRA:SRR6213656 https://www.encodeproject.org/files/ENCFF914YKE/@@download/ENCFF914YKE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/df511a38-02f5-46b3-b257-6388d4514536/ENCFF914YKE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF958TZZ bam bam unfiltered alignments hg19 ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF914YKE/, /files/ENCFF592WLT/, /files/ENCFF807MUK/ 5753027117 ENCODE Processing Pipeline 50f5e6017b6973c2ebcfc0dcc38e0064 https://www.encodeproject.org/files/ENCFF958TZZ/@@download/ENCFF958TZZ.bam released s3://encode-public/2017/03/23/f13d0546-0760-417b-8020-ad293ce5fa9d/ENCFF958TZZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF629CBG bam bam alignments hg19 ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF914YKE/, /files/ENCFF592WLT/, /files/ENCFF807MUK/ 4105512644 ENCODE Processing Pipeline 6e327caeb5221345be55c002facb113c https://www.encodeproject.org/files/ENCFF629CBG/@@download/ENCFF629CBG.bam released s3://encode-public/2017/03/23/e9360156-ca79-498b-b5e0-5b9981c1a763/ENCFF629CBG.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF288VXA bam bam alignments GRCh38 ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF914YKE/, /files/ENCFF592WLT/, /files/ENCFF643CGH/ 4111014126 ENCODE Processing Pipeline ca125c855686dd9e29a3a2c822d819c9 https://www.encodeproject.org/files/ENCFF288VXA/@@download/ENCFF288VXA.bam released s3://encode-public/2017/08/18/1af3eccc-9171-4409-8234-e7b2a14fc041/ENCFF288VXA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF799GXP bam bam unfiltered alignments GRCh38 ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF914YKE/, /files/ENCFF592WLT/, /files/ENCFF643CGH/ 5760234488 ENCODE Processing Pipeline 17b10629eff677c80ce5a38bb3faa9b5 https://www.encodeproject.org/files/ENCFF799GXP/@@download/ENCFF799GXP.bam released s3://encode-public/2017/08/18/17c1a10c-b8df-4792-a750-ae9c1d7100f6/ENCFF799GXP.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF797YRE bam bam unfiltered alignments GRCh38 ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF914YKE/, /files/ENCFF592WLT/ 5762602959 ENCODE Processing Pipeline 4e6ca5b7675c0509dd0800255b8cccd6 https://www.encodeproject.org/files/ENCFF797YRE/@@download/ENCFF797YRE.bam released s3://encode-public/2020/06/02/8ef7cedb-35c4-4052-b870-45daa72e6341/ENCFF797YRE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF319GMS bam bam alignments GRCh38 ENCSR533GIT Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF914YKE/, /files/ENCFF592WLT/ 4053953705 ENCODE Processing Pipeline a889fe57530c5ed94d9f7e85692d9473 https://www.encodeproject.org/files/ENCFF319GMS/@@download/ENCFF319GMS.bam released s3://encode-public/2020/06/02/ccbcc2c3-431e-4618-a293-46c473b2c5d9/ENCFF319GMS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF613XAG fastq fastq reads ENCSR866WVF Control ChIP-seq /fly-donors/ENCDO839RRX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35445/'], '@type': ['Target', 'Item'], 'name': 'CG1832-dmelanogaster', 'label': 'CG1832', '@id': '/targets/CG1832-dmelanogaster/', 'title': 'CG1832 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f15b4f80-e7dc-4802-8ab5-f82763796a3e', 'status': 'released'} dm3 2L 22158935 22182515 DNA 2017-12-15 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 433001607 Kevin White, UChicago 05fbcfc70a82f39b11547e1d23b74756 https://www.encodeproject.org/files/ENCFF613XAG/@@download/ENCFF613XAG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/07b0ad2f-80e5-4eb8-a9ae-910f4ce92649/ENCFF613XAG.fastq.gz missing genetic modification characterization, missing biosample characterization missing documents ENCFF524VYT bam bam alignments dm3 ENCSR866WVF Control ChIP-seq /fly-donors/ENCDO839RRX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35445/'], '@type': ['Target', 'Item'], 'name': 'CG1832-dmelanogaster', 'label': 'CG1832', '@id': '/targets/CG1832-dmelanogaster/', 'title': 'CG1832 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f15b4f80-e7dc-4802-8ab5-f82763796a3e', 'status': 'released'} dm3 2L 22158935 22182515 DNA 2017-12-15 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF613XAG/, /files/ENCFF059UHX/ 524362452 Kevin White, UChicago a82e8419c0ec3b02d6a9b6d76f5c897f https://www.encodeproject.org/files/ENCFF524VYT/@@download/ENCFF524VYT.bam released s3://encode-public/2016/12/21/00ac442d-d894-456f-8989-780ca262599b/ENCFF524VYT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization missing documents ENCFF466UXY bam bam alignments dm6 ENCSR866WVF Control ChIP-seq /fly-donors/ENCDO839RRX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35445/'], '@type': ['Target', 'Item'], 'name': 'CG1832-dmelanogaster', 'label': 'CG1832', '@id': '/targets/CG1832-dmelanogaster/', 'title': 'CG1832 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f15b4f80-e7dc-4802-8ab5-f82763796a3e', 'status': 'released'} dm3 2L 22158935 22182515 DNA 2017-12-15 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF613XAG/, /files/ENCFF479RCH/ 521711487 Kevin White, UChicago 663ca85bfc8e7d3bba4bec153b16aa34 https://www.encodeproject.org/files/ENCFF466UXY/@@download/ENCFF466UXY.bam released s3://encode-public/2016/12/22/f37bf8d9-aaab-4fe1-a655-738d5fb06afe/ENCFF466UXY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization missing documents ENCFF292WRV bigWig bigWig read-depth normalized signal dm3 ENCSR866WVF Control ChIP-seq /fly-donors/ENCDO839RRX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35445/'], '@type': ['Target', 'Item'], 'name': 'CG1832-dmelanogaster', 'label': 'CG1832', '@id': '/targets/CG1832-dmelanogaster/', 'title': 'CG1832 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f15b4f80-e7dc-4802-8ab5-f82763796a3e', 'status': 'released'} dm3 2L 22158935 22182515 DNA 2017-12-15 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF524VYT/ 15219545 Kevin White, UChicago 4dcdd62b5c7902ac97501def68799e4f https://www.encodeproject.org/files/ENCFF292WRV/@@download/ENCFF292WRV.bigWig released s3://encode-public/2017/01/03/86666a02-34f8-4757-914a-a17e22bbfee5/ENCFF292WRV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization missing documents ENCFF563AKH bigWig bigWig signal of unique reads dm3 ENCSR866WVF Control ChIP-seq /fly-donors/ENCDO839RRX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35445/'], '@type': ['Target', 'Item'], 'name': 'CG1832-dmelanogaster', 'label': 'CG1832', '@id': '/targets/CG1832-dmelanogaster/', 'title': 'CG1832 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f15b4f80-e7dc-4802-8ab5-f82763796a3e', 'status': 'released'} dm3 2L 22158935 22182515 DNA 2017-12-15 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF524VYT/ 15249661 Kevin White, UChicago 58130c90114da4a6e0c5cec34f5508b2 https://www.encodeproject.org/files/ENCFF563AKH/@@download/ENCFF563AKH.bigWig released s3://encode-public/2017/01/03/c04c863e-7b8e-4dcb-9efa-2d166275bf40/ENCFF563AKH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization missing documents ENCFF270AXZ bigWig bigWig read-depth normalized signal dm6 ENCSR866WVF Control ChIP-seq /fly-donors/ENCDO839RRX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35445/'], '@type': ['Target', 'Item'], 'name': 'CG1832-dmelanogaster', 'label': 'CG1832', '@id': '/targets/CG1832-dmelanogaster/', 'title': 'CG1832 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f15b4f80-e7dc-4802-8ab5-f82763796a3e', 'status': 'released'} dm3 2L 22158935 22182515 DNA 2017-12-15 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF466UXY/ 17319909 Kevin White, UChicago 42689e007606ed5e900093f44e2cb0e7 https://www.encodeproject.org/files/ENCFF270AXZ/@@download/ENCFF270AXZ.bigWig released s3://encode-public/2017/01/04/90245f0b-35b2-4c6f-8da3-a39e9582b921/ENCFF270AXZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization missing documents ENCFF138TUH bigWig bigWig signal of unique reads dm6 ENCSR866WVF Control ChIP-seq /fly-donors/ENCDO839RRX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35445/'], '@type': ['Target', 'Item'], 'name': 'CG1832-dmelanogaster', 'label': 'CG1832', '@id': '/targets/CG1832-dmelanogaster/', 'title': 'CG1832 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f15b4f80-e7dc-4802-8ab5-f82763796a3e', 'status': 'released'} dm3 2L 22158935 22182515 DNA 2017-12-15 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF466UXY/ 17362092 Kevin White, UChicago 2859b9632303c8d310f658cc84e4c508 https://www.encodeproject.org/files/ENCFF138TUH/@@download/ENCFF138TUH.bigWig released s3://encode-public/2017/01/04/73bb9bab-98b3-4df0-a3e5-701c5f8cc754/ENCFF138TUH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization missing documents ENCFF971VIW fastq fastq reads ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF999NFH/ 2040449674 Richard Myers, HAIB 60a8bbbeaa9b03d59fc60191eea7df93 SRA:SRR6213720 https://www.encodeproject.org/files/ENCFF971VIW/@@download/ENCFF971VIW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/73d28424-b3ef-42b6-951b-0b2e607840f7/ENCFF971VIW.fastq.gz ENCFF999NFH fastq fastq reads ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF971VIW/ 2095872026 Richard Myers, HAIB cc03771935f7de27858b6324465c0777 SRA:SRR6213720 https://www.encodeproject.org/files/ENCFF999NFH/@@download/ENCFF999NFH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/c2e1ad9b-c944-4504-8561-e031730b1adf/ENCFF999NFH.fastq.gz ENCFF522TXM bam bam unfiltered alignments GRCh38 ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF999NFH/, /files/ENCFF643CGH/, /files/ENCFF971VIW/ 4975988008 ENCODE Processing Pipeline dc7c3d6f032a7cb8ffd0c702ea49bcc6 https://www.encodeproject.org/files/ENCFF522TXM/@@download/ENCFF522TXM.bam released s3://encode-public/2016/11/08/62f92916-5f4d-4083-887c-37d71f69fe71/ENCFF522TXM.bam ENCODE3 GRCh38 archived ENCFF945FOG bam bam unfiltered alignments hg19 ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF999NFH/, /files/ENCFF807MUK/, /files/ENCFF971VIW/ 4954034630 ENCODE Processing Pipeline ec7a3950d2f747501747f3fbf95064bc https://www.encodeproject.org/files/ENCFF945FOG/@@download/ENCFF945FOG.bam released s3://encode-public/2016/11/08/df21635e-5441-44f6-9a20-600e1e77c0be/ENCFF945FOG.bam ENCODE3 hg19 archived ENCFF195IWD bam bam alignments GRCh38 ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF999NFH/, /files/ENCFF643CGH/, /files/ENCFF971VIW/ 3483313979 ENCODE Processing Pipeline cfdafb992e39ee38a1f91f22572984be https://www.encodeproject.org/files/ENCFF195IWD/@@download/ENCFF195IWD.bam released s3://encode-public/2016/11/08/bbd71c27-b96c-4d46-9cc5-e4364cab6016/ENCFF195IWD.bam ENCODE3 GRCh38 archived ENCFF488ZZI bam bam alignments hg19 ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF999NFH/, /files/ENCFF807MUK/, /files/ENCFF971VIW/ 3479352910 ENCODE Processing Pipeline fadb3dc809d2ed02b6866dba7776afcb https://www.encodeproject.org/files/ENCFF488ZZI/@@download/ENCFF488ZZI.bam released s3://encode-public/2016/11/08/c24cb353-b728-4e8a-9d26-5f7a42eef4d1/ENCFF488ZZI.bam ENCODE3 hg19 archived ENCFF278JXF bam bam unfiltered alignments GRCh38 ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF999NFH/, /files/ENCFF110MCL/, /files/ENCFF971VIW/ 4961087934 ENCODE Processing Pipeline c8c5f1e4e7755182363e2a0e6a852ffc https://www.encodeproject.org/files/ENCFF278JXF/@@download/ENCFF278JXF.bam released s3://encode-public/2020/10/28/6e601b24-fe82-47e8-936b-30c34b8e852d/ENCFF278JXF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF593VWY bam bam alignments GRCh38 ENCSR483JPG Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF999NFH/, /files/ENCFF110MCL/, /files/ENCFF971VIW/ 3269737844 ENCODE Processing Pipeline f1aa6931fb72013fbf28bda6d82c742e https://www.encodeproject.org/files/ENCFF593VWY/@@download/ENCFF593VWY.bam released s3://encode-public/2020/10/28/50fdd3f9-a0e0-4d52-98aa-990d300552f9/ENCFF593VWY.bam ENCODE4 v1.5.1 GRCh38 released ENCFF913JQM fastq fastq reads ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF024VTZ/ 5134051206 Michael Snyder, Stanford 866a71058812629072c758774769175c SRA:SRR6214212 https://www.encodeproject.org/files/ENCFF913JQM/@@download/ENCFF913JQM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/26/cc0b9ba4-c0a0-4d38-9387-16f1106085f1/ENCFF913JQM.fastq.gz mild to moderate bottlenecking ENCFF024VTZ fastq fastq reads ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF913JQM/ 5388341171 Michael Snyder, Stanford be7e3b687f92681e3f693d7dfacd0cee SRA:SRR6214212 https://www.encodeproject.org/files/ENCFF024VTZ/@@download/ENCFF024VTZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/26/745abae2-8450-4b63-8bac-bd0521883341/ENCFF024VTZ.fastq.gz mild to moderate bottlenecking ENCFF524AJL bam bam unfiltered alignments GRCh38 ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF913JQM/, /files/ENCFF024VTZ/, /files/ENCFF643CGH/ 9578711712 ENCODE Processing Pipeline 6b5554bf4cc627677fb945ce70545419 https://www.encodeproject.org/files/ENCFF524AJL/@@download/ENCFF524AJL.bam released s3://encode-public/2016/09/01/73e782ce-46f8-42e0-910a-7042da70d0bc/ENCFF524AJL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF460MTF bam bam alignments hg19 ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF913JQM/, /files/ENCFF024VTZ/, /files/ENCFF807MUK/ 7400943986 ENCODE Processing Pipeline 7c8827414a62766b0a97846f20d4b646 https://www.encodeproject.org/files/ENCFF460MTF/@@download/ENCFF460MTF.bam released s3://encode-public/2016/09/01/96165027-7788-40a0-a4e4-b3b6d4f5741c/ENCFF460MTF.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF748LGK bam bam unfiltered alignments hg19 ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF913JQM/, /files/ENCFF024VTZ/, /files/ENCFF807MUK/ 9571105972 ENCODE Processing Pipeline ce8003c15376a83eb29f851206617466 https://www.encodeproject.org/files/ENCFF748LGK/@@download/ENCFF748LGK.bam released s3://encode-public/2016/09/01/c0cb11d7-25fb-486e-8484-cdee56e9c69d/ENCFF748LGK.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF978YES bam bam alignments GRCh38 ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF913JQM/, /files/ENCFF024VTZ/, /files/ENCFF643CGH/ 7420115599 ENCODE Processing Pipeline 7125dea53af36e7c9c6665a827b00527 https://www.encodeproject.org/files/ENCFF978YES/@@download/ENCFF978YES.bam released s3://encode-public/2016/09/01/e0637130-8cd8-41c6-92bd-8a21e2e2851f/ENCFF978YES.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF688OVQ bam bam unfiltered alignments GRCh38 ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF913JQM/, /files/ENCFF024VTZ/ 9594771774 ENCODE Processing Pipeline b6700022e906e05d3f71d25c427c7df9 https://www.encodeproject.org/files/ENCFF688OVQ/@@download/ENCFF688OVQ.bam released s3://encode-public/2020/06/02/8eb0f0a7-81b5-48e8-8bde-69d6e0b3a9a5/ENCFF688OVQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF032DRN bam bam alignments GRCh38 ENCSR983XKG Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF913JQM/, /files/ENCFF024VTZ/ 7248893772 ENCODE Processing Pipeline b2ff035b8ea86e92be53697214f68651 https://www.encodeproject.org/files/ENCFF032DRN/@@download/ENCFF032DRN.bam released s3://encode-public/2020/06/02/fa155123-bf03-423f-86a8-ffc0a2a11817/ENCFF032DRN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF303HGU fastq fastq reads ENCSR571GMX Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1050256065 Kevin White, UChicago 96c191f1dffde47e615fc9c9bf5d1ea8 https://www.encodeproject.org/files/ENCFF303HGU/@@download/ENCFF303HGU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/46f6ca3d-05db-4a2c-a012-e5f253709fb6/ENCFF303HGU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF240DZK bam bam alignments dm6 ENCSR571GMX Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF303HGU/, /files/ENCFF479RCH/ 1400334045 Kevin White, UChicago b51e48a57025936b06af3e229d86cbe1 https://www.encodeproject.org/files/ENCFF240DZK/@@download/ENCFF240DZK.bam released s3://encode-public/2018/12/07/e1905bf8-d039-4ee6-bfd1-9f8230e39947/ENCFF240DZK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF183AOR bigWig bigWig read-depth normalized signal dm6 ENCSR571GMX Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF240DZK/ 17773505 Kevin White, UChicago 97b9eb7f042dcbda3c2d60d11bf1383d https://www.encodeproject.org/files/ENCFF183AOR/@@download/ENCFF183AOR.bigWig released s3://encode-public/2018/12/10/cd55b262-e5ba-4b03-8682-f099023df526/ENCFF183AOR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF541FHZ bigWig bigWig signal of unique reads dm6 ENCSR571GMX Control ChIP-seq /fly-donors/ENCDO544QMR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36702/'], '@type': ['Target', 'Item'], 'name': 'Hr51-dmelanogaster', 'label': 'Hr51', '@id': '/targets/Hr51-dmelanogaster/', 'title': 'Hr51 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3b55b779-1d4f-40f1-93fe-fccb01cbee96', 'status': 'released'} dm3 2R 11195713 11254504 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF240DZK/ 17777978 Kevin White, UChicago 7c40c40e16a92cd38a3ab5664227c458 https://www.encodeproject.org/files/ENCFF541FHZ/@@download/ENCFF541FHZ.bigWig released s3://encode-public/2018/12/10/f6959844-9777-42cd-a111-1d8955c4d6ee/ENCFF541FHZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF555QUG fastq fastq reads ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF853XWN/ 1433041414 Richard Myers, HAIB 4c6b315a6e76ac5c64ff66a4f69064f4 SRA:SRR6212832 https://www.encodeproject.org/files/ENCFF555QUG/@@download/ENCFF555QUG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/22eea607-8226-456d-a238-5aceebbd52f3/ENCFF555QUG.fastq.gz low read depth ENCFF853XWN fastq fastq reads ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF555QUG/ 1364090429 Richard Myers, HAIB 025811871bc86d8ab54ebf41c402a527 SRA:SRR6212832 https://www.encodeproject.org/files/ENCFF853XWN/@@download/ENCFF853XWN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/96c3aa8d-7a40-40a0-9928-eb2da5bab8fe/ENCFF853XWN.fastq.gz low read depth ENCFF355ACP bam bam alignments hg19 ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF853XWN/, /files/ENCFF807MUK/, /files/ENCFF555QUG/ 1555866305 ENCODE Processing Pipeline 2e6d3b4ede8feb99961d7855fd1e8fbe https://www.encodeproject.org/files/ENCFF355ACP/@@download/ENCFF355ACP.bam released s3://encode-public/2016/11/08/09dd70ec-2a48-4081-aa6f-1b2dd2049aec/ENCFF355ACP.bam ENCODE3 hg19 archived low read depth ENCFF550MHM bam bam unfiltered alignments hg19 ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF853XWN/, /files/ENCFF807MUK/, /files/ENCFF555QUG/ 3585400228 ENCODE Processing Pipeline 82e4ffcbe5de33bf4398375fbce32d18 https://www.encodeproject.org/files/ENCFF550MHM/@@download/ENCFF550MHM.bam released s3://encode-public/2016/11/08/699786a2-df8a-48fd-aa63-b7c9baf50129/ENCFF550MHM.bam ENCODE3 hg19 archived low read depth ENCFF383ZXS bam bam unfiltered alignments GRCh38 ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF853XWN/, /files/ENCFF643CGH/, /files/ENCFF555QUG/ 3612533434 ENCODE Processing Pipeline be025177d383d09bdc1ec6674b2406b7 https://www.encodeproject.org/files/ENCFF383ZXS/@@download/ENCFF383ZXS.bam released s3://encode-public/2016/11/08/4071aa85-6d32-47f8-b9f2-2f29eedcc1c5/ENCFF383ZXS.bam ENCODE3 GRCh38 archived low read depth ENCFF660MMX bam bam alignments GRCh38 ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF853XWN/, /files/ENCFF643CGH/, /files/ENCFF555QUG/ 1556667051 ENCODE Processing Pipeline 2525fd1cdc3179b74d2d5c7284bb6096 https://www.encodeproject.org/files/ENCFF660MMX/@@download/ENCFF660MMX.bam released s3://encode-public/2016/11/08/68ebef5b-2958-4fee-889e-6d190fbd3a4a/ENCFF660MMX.bam ENCODE3 GRCh38 archived low read depth ENCFF718WIJ bam bam unfiltered alignments GRCh38 ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF853XWN/, /files/ENCFF555QUG/, /files/ENCFF110MCL/ 3639150406 ENCODE Processing Pipeline f4ced0f6afeb53f38ea8ee8a4016e17a https://www.encodeproject.org/files/ENCFF718WIJ/@@download/ENCFF718WIJ.bam released s3://encode-public/2020/10/28/a3466484-b404-4a96-89ee-8a60470a0c6a/ENCFF718WIJ.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF226HOZ bam bam alignments GRCh38 ENCSR147NJH Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001157 transverse colon tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF853XWN/, /files/ENCFF555QUG/, /files/ENCFF110MCL/ 1664881381 ENCODE Processing Pipeline 5af2cf076811ca1fb946dcc2995ed1c7 https://www.encodeproject.org/files/ENCFF226HOZ/@@download/ENCFF226HOZ.bam released s3://encode-public/2020/10/28/1f51d961-8c02-48c6-9ead-d3c93303f659/ENCFF226HOZ.bam ENCODE4 v1.5.1 GRCh38 released low read depth ENCFF426DJQ fastq fastq reads ENCSR067XAN Control ChIP-seq /fly-donors/ENCDO603ZEZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38004/'], '@type': ['Target', 'Item'], 'name': 'gsb-n-dmelanogaster', 'label': 'gsb-n', '@id': '/targets/gsb-n-dmelanogaster/', 'title': 'gsb-n (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '005f095e-8eeb-4fe3-a5d7-075b0abd51d4', 'status': 'released'} dm3 2R 20926709 20950681 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 738724746 Kevin White, UChicago 876868bb3c4c7762667f94bc3b408a36 https://www.encodeproject.org/files/ENCFF426DJQ/@@download/ENCFF426DJQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF991MUX/ released s3://encode-public/2018/09/18/3ae914c6-985f-4b31-a15f-6f30693a261b/ENCFF426DJQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF514PID bam bam alignments dm6 ENCSR067XAN Control ChIP-seq /fly-donors/ENCDO603ZEZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38004/'], '@type': ['Target', 'Item'], 'name': 'gsb-n-dmelanogaster', 'label': 'gsb-n', '@id': '/targets/gsb-n-dmelanogaster/', 'title': 'gsb-n (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '005f095e-8eeb-4fe3-a5d7-075b0abd51d4', 'status': 'released'} dm3 2R 20926709 20950681 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF426DJQ/, /files/ENCFF479RCH/ 969234770 Kevin White, UChicago 6b918c8b00264926d4cab5175221907d https://www.encodeproject.org/files/ENCFF514PID/@@download/ENCFF514PID.bam released s3://encode-public/2018/09/19/d4ef9870-d2fb-45bb-8338-02d891fb8b24/ENCFF514PID.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF266XXZ bigWig bigWig signal of unique reads dm6 ENCSR067XAN Control ChIP-seq /fly-donors/ENCDO603ZEZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38004/'], '@type': ['Target', 'Item'], 'name': 'gsb-n-dmelanogaster', 'label': 'gsb-n', '@id': '/targets/gsb-n-dmelanogaster/', 'title': 'gsb-n (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '005f095e-8eeb-4fe3-a5d7-075b0abd51d4', 'status': 'released'} dm3 2R 20926709 20950681 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF514PID/ 17558114 Kevin White, UChicago af21673862d29cb036a5408a592b5723 https://www.encodeproject.org/files/ENCFF266XXZ/@@download/ENCFF266XXZ.bigWig released s3://encode-public/2018/09/19/98894054-440b-4306-b4b9-4474e4ad7799/ENCFF266XXZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF473ZCS bigWig bigWig read-depth normalized signal dm6 ENCSR067XAN Control ChIP-seq /fly-donors/ENCDO603ZEZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38004/'], '@type': ['Target', 'Item'], 'name': 'gsb-n-dmelanogaster', 'label': 'gsb-n', '@id': '/targets/gsb-n-dmelanogaster/', 'title': 'gsb-n (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '005f095e-8eeb-4fe3-a5d7-075b0abd51d4', 'status': 'released'} dm3 2R 20926709 20950681 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF514PID/ 17563303 Kevin White, UChicago cfeead73d3405cbd2e1e7c4c0d9377ff https://www.encodeproject.org/files/ENCFF473ZCS/@@download/ENCFF473ZCS.bigWig released s3://encode-public/2018/09/19/f1836139-8899-43cd-b4d3-df7d5e7cb07a/ENCFF473ZCS.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF938ZNR fastq fastq reads ENCSR214WCZ Control ChIP-seq /fly-donors/ENCDO967PFK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43495/'], '@type': ['Target', 'Item'], 'name': 'dmrt99B-dmelanogaster', 'label': 'dmrt99B', '@id': '/targets/dmrt99B-dmelanogaster/', 'title': 'dmrt99B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50cbdb42-74d1-4fca-a5a5-3ee76a8cac80', 'status': 'released'} dm3 3R 25463625 25549986 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 783949549 Kevin White, UChicago 5b4a7e75e0c4bd9003c46b2fb538778f https://www.encodeproject.org/files/ENCFF938ZNR/@@download/ENCFF938ZNR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/aa75870d-b724-4f39-8405-9401cf01b7f4/ENCFF938ZNR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF584HNO bam bam alignments dm6 ENCSR214WCZ Control ChIP-seq /fly-donors/ENCDO967PFK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43495/'], '@type': ['Target', 'Item'], 'name': 'dmrt99B-dmelanogaster', 'label': 'dmrt99B', '@id': '/targets/dmrt99B-dmelanogaster/', 'title': 'dmrt99B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50cbdb42-74d1-4fca-a5a5-3ee76a8cac80', 'status': 'released'} dm3 3R 25463625 25549986 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF938ZNR/, /files/ENCFF479RCH/ 1038258681 Kevin White, UChicago 73611ffce346b16c8ef017d4b317af9a https://www.encodeproject.org/files/ENCFF584HNO/@@download/ENCFF584HNO.bam released s3://encode-public/2018/12/07/459a96c0-5a00-4ff7-ae49-f7a70706e0ad/ENCFF584HNO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF652BUR bigWig bigWig read-depth normalized signal dm6 ENCSR214WCZ Control ChIP-seq /fly-donors/ENCDO967PFK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43495/'], '@type': ['Target', 'Item'], 'name': 'dmrt99B-dmelanogaster', 'label': 'dmrt99B', '@id': '/targets/dmrt99B-dmelanogaster/', 'title': 'dmrt99B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50cbdb42-74d1-4fca-a5a5-3ee76a8cac80', 'status': 'released'} dm3 3R 25463625 25549986 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF584HNO/ 17690752 Kevin White, UChicago df9e78c535650081b0cedc4248a25af2 https://www.encodeproject.org/files/ENCFF652BUR/@@download/ENCFF652BUR.bigWig released s3://encode-public/2018/12/10/7448bac0-766d-424e-88b1-e4999170ac76/ENCFF652BUR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF039GGN bigWig bigWig signal of unique reads dm6 ENCSR214WCZ Control ChIP-seq /fly-donors/ENCDO967PFK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43495/'], '@type': ['Target', 'Item'], 'name': 'dmrt99B-dmelanogaster', 'label': 'dmrt99B', '@id': '/targets/dmrt99B-dmelanogaster/', 'title': 'dmrt99B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '50cbdb42-74d1-4fca-a5a5-3ee76a8cac80', 'status': 'released'} dm3 3R 25463625 25549986 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF584HNO/ 17667000 Kevin White, UChicago ad3de5a62bf7d5d80e4216f5a27241d7 https://www.encodeproject.org/files/ENCFF039GGN/@@download/ENCFF039GGN.bigWig released s3://encode-public/2018/12/10/c7035353-4550-4584-ab27-b41991feea3a/ENCFF039GGN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF427XVX fastq fastq reads ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 paired-ended 1 /files/ENCFF327UHP/ 2943892710 Michael Snyder, Stanford f6723096ed45db367b85253e748ec999 SRA:SRR5111832 https://www.encodeproject.org/files/ENCFF427XVX/@@download/ENCFF427XVX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/e7fc078f-3237-475f-b10e-9072d45ea459/ENCFF427XVX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF327UHP fastq fastq reads ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 paired-ended 2 /files/ENCFF427XVX/ 2982714231 Michael Snyder, Stanford 09016a90265e44b5028b206d9e91cca8 SRA:SRR5111832 https://www.encodeproject.org/files/ENCFF327UHP/@@download/ENCFF327UHP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/ba6561af-53e8-4702-af46-b9439af38f30/ENCFF327UHP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF670LLY bam bam alignments hg19 ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 /files/ENCFF327UHP/, /files/ENCFF807MUK/, /files/ENCFF427XVX/ 5101750657 ENCODE Processing Pipeline a141393b14172cf6d8f223f69f20df0c https://www.encodeproject.org/files/ENCFF670LLY/@@download/ENCFF670LLY.bam released s3://encode-public/2016/09/11/2f7310fd-e3f3-4de5-8dc8-30ddd51b533a/ENCFF670LLY.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF456LJT bam bam unfiltered alignments hg19 ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 /files/ENCFF327UHP/, /files/ENCFF807MUK/, /files/ENCFF427XVX/ 6056037159 ENCODE Processing Pipeline 53d0c5357667867d96c4dd8a4ef5af06 https://www.encodeproject.org/files/ENCFF456LJT/@@download/ENCFF456LJT.bam released s3://encode-public/2016/09/11/9662f8e3-320f-420d-a87d-796b47f18264/ENCFF456LJT.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF841LDY bam bam unfiltered alignments GRCh38 ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 /files/ENCFF327UHP/, /files/ENCFF643CGH/, /files/ENCFF427XVX/ 6063215350 ENCODE Processing Pipeline 6e9d07b01a38cf64803d073f897b3723 https://www.encodeproject.org/files/ENCFF841LDY/@@download/ENCFF841LDY.bam released s3://encode-public/2016/09/11/de711b26-bb59-4920-945d-317bada26fc4/ENCFF841LDY.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF743WAA bam bam alignments GRCh38 ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 /files/ENCFF327UHP/, /files/ENCFF643CGH/, /files/ENCFF427XVX/ 5104017116 ENCODE Processing Pipeline b5a3436dab02f14231cdd313f6283e2f https://www.encodeproject.org/files/ENCFF743WAA/@@download/ENCFF743WAA.bam released s3://encode-public/2016/09/11/7e00cb73-34bf-458b-92b1-08f96ea8b44c/ENCFF743WAA.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF218RCF bam bam unfiltered alignments GRCh38 ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 /files/ENCFF110MCL/, /files/ENCFF427XVX/, /files/ENCFF327UHP/ 6148577837 ENCODE Processing Pipeline 523b34cdd1af2abd73c26384d3fe1d50 https://www.encodeproject.org/files/ENCFF218RCF/@@download/ENCFF218RCF.bam released s3://encode-public/2020/06/02/40a2b4af-96ac-4e86-9b79-7f209c365f52/ENCFF218RCF.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF800IMV bam bam alignments GRCh38 ENCSR603CJM Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1374'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23090/'], '@type': ['Target', 'Item'], 'name': 'ZNF423-human', 'label': 'ZNF423', '@id': '/targets/ZNF423-human/', 'title': 'ZNF423 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '412bebd5-8317-4481-b021-f3a71baed44e', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_2 101 /files/ENCFF110MCL/, /files/ENCFF427XVX/, /files/ENCFF327UHP/ 5179219709 ENCODE Processing Pipeline 97bcc8f7dea403ac8e44580e135563bd https://www.encodeproject.org/files/ENCFF800IMV/@@download/ENCFF800IMV.bam released s3://encode-public/2020/06/02/65d36c39-0b7a-4b84-b74f-dcf4eb556bce/ENCFF800IMV.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF392SIQ fastq fastq reads ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 65581632 Michael Snyder, Stanford 9c38bc95de93291fe2358a403fb3761c https://www.encodeproject.org/files/ENCFF392SIQ/@@download/ENCFF392SIQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/18eda856-78d3-4d59-b61b-f5731f2c1551/ENCFF392SIQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF026CZQ fastq fastq reads ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 25674186 Michael Snyder, Stanford 9a5191ff09f9aecb27da5df1d185bc11 https://www.encodeproject.org/files/ENCFF026CZQ/@@download/ENCFF026CZQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/bd520c08-7d78-4006-9ef0-23c3a7e57220/ENCFF026CZQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF312HRV bigWig bigWig signal of unique reads ce10 ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF612HRQ/ 10016151 Kevin White, UChicago 907558bad7aef0d8cd26fe0207e21ca9 https://www.encodeproject.org/files/ENCFF312HRV/@@download/ENCFF312HRV.bigWig released s3://encode-public/2017/04/29/0cbbd672-62d7-4165-a536-b3c414fd592c/ENCFF312HRV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF331HGH bigWig bigWig read-depth normalized signal ce10 ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF612HRQ/ 10038860 Kevin White, UChicago d1b83d648fbb6c798479a3da02a7bd20 https://www.encodeproject.org/files/ENCFF331HGH/@@download/ENCFF331HGH.bigWig released s3://encode-public/2017/04/29/35478a1e-5c98-4442-88ab-d1312cb57937/ENCFF331HGH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF812LAB bam bam alignments ce11 ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF392SIQ/, /files/ENCFF026CZQ/, /files/ENCFF586MOL/ 94998187 Kevin White, UChicago dfb4bf3c76a7a421bdf6ea8e08747386 https://www.encodeproject.org/files/ENCFF812LAB/@@download/ENCFF812LAB.bam released s3://encode-public/2018/01/05/f72e71bb-8ac0-4559-b379-6edc8cb8c118/ENCFF812LAB.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF612HRQ bam bam alignments ce10 ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF392SIQ/, /files/ENCFF026CZQ/, /files/ENCFF987UMF/ 94914683 Kevin White, UChicago 31ceae6f22311af628b539cfbf6aab4a https://www.encodeproject.org/files/ENCFF612HRQ/@@download/ENCFF612HRQ.bam released s3://encode-public/2018/01/05/93b3b117-96f7-4c9c-b6bb-9dc75cf6ba27/ENCFF612HRQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF335HNA bigWig bigWig signal of unique reads ce11 ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF812LAB/ 10014831 Kevin White, UChicago c219b82de551fc7e523036608209b81f https://www.encodeproject.org/files/ENCFF335HNA/@@download/ENCFF335HNA.bigWig released s3://encode-public/2018/01/22/ff4b64d8-ea0a-4cde-8afe-9108b775bb54/ENCFF335HNA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF972EQJ bigWig bigWig read-depth normalized signal ce11 ENCSR196QUU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF812LAB/ 10038357 Kevin White, UChicago eac547c10063d0cc82eb8f75f2870e14 https://www.encodeproject.org/files/ENCFF972EQJ/@@download/ENCFF972EQJ.bigWig released s3://encode-public/2018/01/22/455a3d76-2c1d-4aac-92ee-5bfe658410c5/ENCFF972EQJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF971RVE fastq fastq reads ENCSR163EWH Control ChIP-seq /fly-donors/ENCDO259BGG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38716/'], '@type': ['Target', 'Item'], 'name': 'CG10274-dmelanogaster', 'label': 'CG10274', '@id': '/targets/CG10274-dmelanogaster/', 'title': 'CG10274 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8cfe6300-dbaf-4e13-8728-e2d8948c3607', 'status': 'released'} dm3 3L 6164169 6187473 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1497418130 Kevin White, UChicago 8f7f01391ca1251905838d70034844ae https://www.encodeproject.org/files/ENCFF971RVE/@@download/ENCFF971RVE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/f21398d1-e796-4e9e-a974-7a5c8f7f9dba/ENCFF971RVE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF300PMR bam bam alignments dm3 ENCSR163EWH Control ChIP-seq /fly-donors/ENCDO259BGG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38716/'], '@type': ['Target', 'Item'], 'name': 'CG10274-dmelanogaster', 'label': 'CG10274', '@id': '/targets/CG10274-dmelanogaster/', 'title': 'CG10274 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8cfe6300-dbaf-4e13-8728-e2d8948c3607', 'status': 'released'} dm3 3L 6164169 6187473 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF971RVE/, /files/ENCFF059UHX/ 2082547804 Kevin White, UChicago 93a4d304babf4c648093377134bfcc08 https://www.encodeproject.org/files/ENCFF300PMR/@@download/ENCFF300PMR.bam released s3://encode-public/2016/12/21/a4d0f596-45a5-4f3a-aa20-206fec25d88b/ENCFF300PMR.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF935OPR bam bam alignments dm6 ENCSR163EWH Control ChIP-seq /fly-donors/ENCDO259BGG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38716/'], '@type': ['Target', 'Item'], 'name': 'CG10274-dmelanogaster', 'label': 'CG10274', '@id': '/targets/CG10274-dmelanogaster/', 'title': 'CG10274 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8cfe6300-dbaf-4e13-8728-e2d8948c3607', 'status': 'released'} dm3 3L 6164169 6187473 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF971RVE/, /files/ENCFF479RCH/ 2068870942 Kevin White, UChicago be21675ed378749478cf32d1e97bce63 https://www.encodeproject.org/files/ENCFF935OPR/@@download/ENCFF935OPR.bam released s3://encode-public/2016/12/21/5e37bfa6-2641-4248-859f-aa305c34cbc0/ENCFF935OPR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF159NMR bigWig bigWig signal of unique reads dm6 ENCSR163EWH Control ChIP-seq /fly-donors/ENCDO259BGG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38716/'], '@type': ['Target', 'Item'], 'name': 'CG10274-dmelanogaster', 'label': 'CG10274', '@id': '/targets/CG10274-dmelanogaster/', 'title': 'CG10274 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8cfe6300-dbaf-4e13-8728-e2d8948c3607', 'status': 'released'} dm3 3L 6164169 6187473 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF935OPR/ 17675783 Kevin White, UChicago 2f3ab4762d8d19560fac8e849926300c https://www.encodeproject.org/files/ENCFF159NMR/@@download/ENCFF159NMR.bigWig released s3://encode-public/2017/01/04/54209fcc-d4b5-486b-bca0-36d679bcf0ad/ENCFF159NMR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF071MMZ bigWig bigWig read-depth normalized signal dm3 ENCSR163EWH Control ChIP-seq /fly-donors/ENCDO259BGG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38716/'], '@type': ['Target', 'Item'], 'name': 'CG10274-dmelanogaster', 'label': 'CG10274', '@id': '/targets/CG10274-dmelanogaster/', 'title': 'CG10274 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8cfe6300-dbaf-4e13-8728-e2d8948c3607', 'status': 'released'} dm3 3L 6164169 6187473 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF300PMR/ 15646132 Kevin White, UChicago ef4685b887b46b0405e4d61db58e41d9 https://www.encodeproject.org/files/ENCFF071MMZ/@@download/ENCFF071MMZ.bigWig released s3://encode-public/2017/01/04/92b90a97-14d5-4c0e-9c01-0f120c8ef123/ENCFF071MMZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF879CLS bigWig bigWig signal of unique reads dm3 ENCSR163EWH Control ChIP-seq /fly-donors/ENCDO259BGG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38716/'], '@type': ['Target', 'Item'], 'name': 'CG10274-dmelanogaster', 'label': 'CG10274', '@id': '/targets/CG10274-dmelanogaster/', 'title': 'CG10274 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8cfe6300-dbaf-4e13-8728-e2d8948c3607', 'status': 'released'} dm3 3L 6164169 6187473 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF300PMR/ 15646970 Kevin White, UChicago c7365585ee14f7141d2fa32ed26f4191 https://www.encodeproject.org/files/ENCFF879CLS/@@download/ENCFF879CLS.bigWig released s3://encode-public/2017/01/04/aea66bf3-6870-4099-b04a-e35330baa52b/ENCFF879CLS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF735AGJ bigWig bigWig read-depth normalized signal dm6 ENCSR163EWH Control ChIP-seq /fly-donors/ENCDO259BGG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38716/'], '@type': ['Target', 'Item'], 'name': 'CG10274-dmelanogaster', 'label': 'CG10274', '@id': '/targets/CG10274-dmelanogaster/', 'title': 'CG10274 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8cfe6300-dbaf-4e13-8728-e2d8948c3607', 'status': 'released'} dm3 3L 6164169 6187473 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF935OPR/ 17653087 Kevin White, UChicago 48d5b3a3de27a9e700fe6317a6ca5da3 https://www.encodeproject.org/files/ENCFF735AGJ/@@download/ENCFF735AGJ.bigWig released s3://encode-public/2017/01/04/01a0626d-da56-4ded-b7a0-9be48d31d60e/ENCFF735AGJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF049HLF fastq fastq reads ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF636HND/ 2028257446 Richard Myers, HAIB acbce877a58bbe6bcc17b31529c4d1b4 SRA:SRR6213518 https://www.encodeproject.org/files/ENCFF049HLF/@@download/ENCFF049HLF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/b2234d71-5ae7-4f63-ae1a-e1f755f8e1de/ENCFF049HLF.fastq.gz ENCFF636HND fastq fastq reads ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF049HLF/ 1950350910 Richard Myers, HAIB 269466e3da7ae27cd2b206acce111e42 SRA:SRR6213518 https://www.encodeproject.org/files/ENCFF636HND/@@download/ENCFF636HND.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/b70b3770-28a9-437c-ab4a-12555bc64aa6/ENCFF636HND.fastq.gz ENCFF904QGZ bam bam unfiltered alignments GRCh38 ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF636HND/, /files/ENCFF049HLF/, /files/ENCFF643CGH/ 4855133144 ENCODE Processing Pipeline fbc50ed95609ee360bd6ff31e7f96087 https://www.encodeproject.org/files/ENCFF904QGZ/@@download/ENCFF904QGZ.bam released s3://encode-public/2016/11/08/373f6f68-bed4-4bcc-8da2-ad59d437f33b/ENCFF904QGZ.bam ENCODE3 GRCh38 archived ENCFF322XSA bam bam unfiltered alignments hg19 ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF636HND/, /files/ENCFF807MUK/, /files/ENCFF049HLF/ 4836048457 ENCODE Processing Pipeline aaf4230e4d1c01ccdc457b856a62647c https://www.encodeproject.org/files/ENCFF322XSA/@@download/ENCFF322XSA.bam released s3://encode-public/2016/11/08/d093b7ca-b550-4eac-979e-adf7c3ae94e1/ENCFF322XSA.bam ENCODE3 hg19 archived ENCFF574AFD bam bam alignments GRCh38 ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF636HND/, /files/ENCFF049HLF/, /files/ENCFF643CGH/ 3556444096 ENCODE Processing Pipeline 730c747f53c144c95d1d0c367bb96eed https://www.encodeproject.org/files/ENCFF574AFD/@@download/ENCFF574AFD.bam released s3://encode-public/2016/11/08/05e9a9a1-5c3c-4272-be3c-b7f2863a481f/ENCFF574AFD.bam ENCODE3 GRCh38 archived ENCFF997QNY bam bam alignments hg19 ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF636HND/, /files/ENCFF807MUK/, /files/ENCFF049HLF/ 3552542625 ENCODE Processing Pipeline c57e2d59134847da350bb9498e3c74d1 https://www.encodeproject.org/files/ENCFF997QNY/@@download/ENCFF997QNY.bam released s3://encode-public/2016/11/08/15ec69ec-7aa6-418b-adba-26a75aa95d1f/ENCFF997QNY.bam ENCODE3 hg19 archived ENCFF553OHI bam bam unfiltered alignments GRCh38 ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF049HLF/, /files/ENCFF636HND/, /files/ENCFF110MCL/ 4829042555 ENCODE Processing Pipeline 24fbc96b612dd63cd2e04ae186fc8ab9 https://www.encodeproject.org/files/ENCFF553OHI/@@download/ENCFF553OHI.bam released s3://encode-public/2020/10/28/657eff65-233c-4abc-bc01-7f600cb02162/ENCFF553OHI.bam ENCODE4 v1.5.1 GRCh38 released ENCFF195DWT bam bam alignments GRCh38 ENCSR516EKI Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF049HLF/, /files/ENCFF636HND/, /files/ENCFF110MCL/ 3373312043 ENCODE Processing Pipeline a3da38aea56f32b038e28f8622d3e055 https://www.encodeproject.org/files/ENCFF195DWT/@@download/ENCFF195DWT.bam released s3://encode-public/2020/10/28/7bf30dca-db46-4e47-aa6d-75aa83e204b3/ENCFF195DWT.bam ENCODE4 v1.5.1 GRCh38 released ENCFF098IHC fastq fastq reads ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF005SGJ/ 3415911940 Michael Snyder, Stanford 6da936b4b2de45ef91b349b7a6bdae63 SRA:SRR6213584 https://www.encodeproject.org/files/ENCFF098IHC/@@download/ENCFF098IHC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/4f45e308-f452-496c-b8a3-06db447c0b10/ENCFF098IHC.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF005SGJ fastq fastq reads ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF098IHC/ 4002805974 Michael Snyder, Stanford 92df25dbed5a6dc31a0c15696b7bc371 SRA:SRR6213584 https://www.encodeproject.org/files/ENCFF005SGJ/@@download/ENCFF005SGJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/478c5a5e-5bce-4be2-b790-823fc7e3aa2c/ENCFF005SGJ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF499VCH bam bam unfiltered alignments hg19 ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF005SGJ/, /files/ENCFF807MUK/, /files/ENCFF098IHC/ 6819218291 ENCODE Processing Pipeline 10fa46f2d29eb5c42fa7572c36005a33 https://www.encodeproject.org/files/ENCFF499VCH/@@download/ENCFF499VCH.bam released s3://encode-public/2016/12/10/8fb49ceb-8e98-4176-9ab0-8948ab7ed169/ENCFF499VCH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF992PUN bam bam alignments hg19 ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF005SGJ/, /files/ENCFF807MUK/, /files/ENCFF098IHC/ 5021776586 ENCODE Processing Pipeline da4e4b86f1e136a4a6fe2e8c848307b4 https://www.encodeproject.org/files/ENCFF992PUN/@@download/ENCFF992PUN.bam released s3://encode-public/2016/12/10/23bc473c-159d-4c4f-916f-6180c7deee8e/ENCFF992PUN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF654JJY bam bam unfiltered alignments GRCh38 ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF005SGJ/, /files/ENCFF643CGH/, /files/ENCFF098IHC/ 6827251131 ENCODE Processing Pipeline 78c633e724945131b4ecd335b186b09f https://www.encodeproject.org/files/ENCFF654JJY/@@download/ENCFF654JJY.bam released s3://encode-public/2016/12/10/1a86df7f-d347-4253-a862-8267aadee7fd/ENCFF654JJY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF596ZPN bam bam alignments GRCh38 ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF005SGJ/, /files/ENCFF643CGH/, /files/ENCFF098IHC/ 5031856671 ENCODE Processing Pipeline 78f261047df1d2d94c898d5a730c148c https://www.encodeproject.org/files/ENCFF596ZPN/@@download/ENCFF596ZPN.bam released s3://encode-public/2016/12/10/6932fe5d-2a95-4825-969e-89ea7500d094/ENCFF596ZPN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF605IVX bam bam alignments GRCh38 ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF098IHC/, /files/ENCFF005SGJ/ 4923359361 ENCODE Processing Pipeline 364ddea2c3a35e9b6f8e1afb708c902a https://www.encodeproject.org/files/ENCFF605IVX/@@download/ENCFF605IVX.bam released s3://encode-public/2020/06/02/7db3edf4-4a55-4015-926c-4399fc20a129/ENCFF605IVX.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF808NAI bam bam unfiltered alignments GRCh38 ENCSR522KYV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF098IHC/, /files/ENCFF005SGJ/ 6829083425 ENCODE Processing Pipeline 26763660854bdec5dcdfdd6695008640 https://www.encodeproject.org/files/ENCFF808NAI/@@download/ENCFF808NAI.bam released s3://encode-public/2020/06/02/da8d4a5a-94ec-4046-ae8f-6b52dd3fa206/ENCFF808NAI.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF010ENO fastq fastq reads ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF474NYU/ 5662401308 Richard Myers, HAIB 7723d52e0060bce9fd163383ff852dc4 SRA:SRR8660313 https://www.encodeproject.org/files/ENCFF010ENO/@@download/ENCFF010ENO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/60627ae3-c36e-4c7b-b46d-48a60188d3b0/ENCFF010ENO.fastq.gz ENCFF474NYU fastq fastq reads ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF010ENO/ 5426597737 Richard Myers, HAIB 432d74727d4a2eff7fa82adffb4de875 SRA:SRR8660313 https://www.encodeproject.org/files/ENCFF474NYU/@@download/ENCFF474NYU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/31/e86392fe-bc2b-49bb-88ae-2a40f779dfaa/ENCFF474NYU.fastq.gz ENCFF950UMA bam bam unfiltered alignments GRCh38 ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF474NYU/, /files/ENCFF010ENO/ 12671471480 ENCODE Processing Pipeline 7217364affc7cb7240fdae8037dd0e56 https://www.encodeproject.org/files/ENCFF950UMA/@@download/ENCFF950UMA.bam released s3://encode-public/2016/11/08/d2c533a9-0ad6-43c8-b9e3-6857658e6464/ENCFF950UMA.bam ENCODE3 GRCh38 archived ENCFF517TXB bam bam unfiltered alignments hg19 ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF474NYU/, /files/ENCFF010ENO/ 12618440780 ENCODE Processing Pipeline 7a49e0d2cfb2b87c027e05f87583ae9a https://www.encodeproject.org/files/ENCFF517TXB/@@download/ENCFF517TXB.bam released s3://encode-public/2016/11/08/01913765-0928-4386-8f06-f6d72d51d548/ENCFF517TXB.bam ENCODE3 hg19 archived ENCFF720YZF bam bam alignments hg19 ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF474NYU/, /files/ENCFF010ENO/ 9066145416 ENCODE Processing Pipeline 78d532ea087e2622dd6346e7d1ab08ba https://www.encodeproject.org/files/ENCFF720YZF/@@download/ENCFF720YZF.bam released s3://encode-public/2016/11/08/fb2c70f2-50c8-4c1c-8af7-2bd7b9de3589/ENCFF720YZF.bam ENCODE3 hg19 archived ENCFF389BHC bam bam alignments GRCh38 ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF474NYU/, /files/ENCFF010ENO/ 9080290811 ENCODE Processing Pipeline fd63c61ea3112f5c951b2a820c79f9e2 https://www.encodeproject.org/files/ENCFF389BHC/@@download/ENCFF389BHC.bam released s3://encode-public/2016/11/08/8f0de5ee-3adb-4517-8a70-f3b33a94e1bf/ENCFF389BHC.bam ENCODE3 GRCh38 archived ENCFF742XVF bam bam unfiltered alignments GRCh38 ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF474NYU/, /files/ENCFF010ENO/ 12676905886 ENCODE Processing Pipeline 9ec8033921b7b60d2c0361b001250d26 https://www.encodeproject.org/files/ENCFF742XVF/@@download/ENCFF742XVF.bam released s3://encode-public/2020/06/06/e1001689-d654-4e9e-8bfd-6ec5ce7121fb/ENCFF742XVF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF709DOJ bam bam alignments GRCh38 ENCSR905UJI Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000945 stomach tissue Homo sapiens DNA formaldehyde 2016-11-09 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF474NYU/, /files/ENCFF010ENO/ 8626624391 ENCODE Processing Pipeline 673a803e3d249353cfff82a12474ce5e https://www.encodeproject.org/files/ENCFF709DOJ/@@download/ENCFF709DOJ.bam released s3://encode-public/2020/06/06/de1b92bf-caea-4083-aa46-6157ca380fca/ENCFF709DOJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF197YBF fastq fastq reads ENCSR292YZL Control ChIP-seq /fly-donors/ENCDO245FPA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42799/'], '@type': ['Target', 'Item'], 'name': 'nau-dmelanogaster', 'label': 'nau', '@id': '/targets/nau-dmelanogaster/', 'title': 'nau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c049510e-9f12-41a9-a52f-cf5f8c84f379', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1072729077 Kevin White, UChicago bc984d84a1a921fc20ac5907fbefbb94 https://www.encodeproject.org/files/ENCFF197YBF/@@download/ENCFF197YBF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/8e4dcde8-c092-4730-b584-7a0b7e0da01f/ENCFF197YBF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF177FXT bam bam alignments dm3 ENCSR292YZL Control ChIP-seq /fly-donors/ENCDO245FPA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42799/'], '@type': ['Target', 'Item'], 'name': 'nau-dmelanogaster', 'label': 'nau', '@id': '/targets/nau-dmelanogaster/', 'title': 'nau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c049510e-9f12-41a9-a52f-cf5f8c84f379', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF197YBF/ 1442853042 Kevin White, UChicago e6e1557f6bb7cfefedf384a7310f8fa7 https://www.encodeproject.org/files/ENCFF177FXT/@@download/ENCFF177FXT.bam released s3://encode-public/2017/09/12/2395989c-6241-43b4-9420-f2e5f131ede9/ENCFF177FXT.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF665NAW bam bam alignments dm6 ENCSR292YZL Control ChIP-seq /fly-donors/ENCDO245FPA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42799/'], '@type': ['Target', 'Item'], 'name': 'nau-dmelanogaster', 'label': 'nau', '@id': '/targets/nau-dmelanogaster/', 'title': 'nau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c049510e-9f12-41a9-a52f-cf5f8c84f379', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF197YBF/ 1433421363 Kevin White, UChicago c3810843389943b697a2b682bb71bf0a https://www.encodeproject.org/files/ENCFF665NAW/@@download/ENCFF665NAW.bam released s3://encode-public/2017/09/13/15652656-c467-4cd8-9b3c-ef59a13e7457/ENCFF665NAW.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF278WBG bigWig bigWig read-depth normalized signal dm3 ENCSR292YZL Control ChIP-seq /fly-donors/ENCDO245FPA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42799/'], '@type': ['Target', 'Item'], 'name': 'nau-dmelanogaster', 'label': 'nau', '@id': '/targets/nau-dmelanogaster/', 'title': 'nau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c049510e-9f12-41a9-a52f-cf5f8c84f379', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF177FXT/ 15392354 Kevin White, UChicago ba0bcf14c716f62a50893165c2fc2bac https://www.encodeproject.org/files/ENCFF278WBG/@@download/ENCFF278WBG.bigWig released s3://encode-public/2017/09/13/22801d85-d731-4d31-8251-445e87188163/ENCFF278WBG.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF735TPP bigWig bigWig signal of unique reads dm3 ENCSR292YZL Control ChIP-seq /fly-donors/ENCDO245FPA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42799/'], '@type': ['Target', 'Item'], 'name': 'nau-dmelanogaster', 'label': 'nau', '@id': '/targets/nau-dmelanogaster/', 'title': 'nau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c049510e-9f12-41a9-a52f-cf5f8c84f379', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF177FXT/ 15430986 Kevin White, UChicago f4532d3090efb399d78a3e0b944f41c6 https://www.encodeproject.org/files/ENCFF735TPP/@@download/ENCFF735TPP.bigWig released s3://encode-public/2017/09/13/2d621de6-53db-4ecc-b8c9-a4fbea172aea/ENCFF735TPP.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF189XOS bigWig bigWig read-depth normalized signal dm6 ENCSR292YZL Control ChIP-seq /fly-donors/ENCDO245FPA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42799/'], '@type': ['Target', 'Item'], 'name': 'nau-dmelanogaster', 'label': 'nau', '@id': '/targets/nau-dmelanogaster/', 'title': 'nau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c049510e-9f12-41a9-a52f-cf5f8c84f379', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF665NAW/ 17586115 Kevin White, UChicago a5c6faf5aef9519b361b361765582d1f https://www.encodeproject.org/files/ENCFF189XOS/@@download/ENCFF189XOS.bigWig released s3://encode-public/2017/09/14/c5d4ff6d-b1a9-4ad1-abd8-c93cb2f656ac/ENCFF189XOS.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF278VQJ bigWig bigWig signal of unique reads dm6 ENCSR292YZL Control ChIP-seq /fly-donors/ENCDO245FPA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42799/'], '@type': ['Target', 'Item'], 'name': 'nau-dmelanogaster', 'label': 'nau', '@id': '/targets/nau-dmelanogaster/', 'title': 'nau (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c049510e-9f12-41a9-a52f-cf5f8c84f379', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF665NAW/ 17632406 Kevin White, UChicago caa1f55f7fbf8ae48a335bb9a436654a https://www.encodeproject.org/files/ENCFF278VQJ/@@download/ENCFF278VQJ.bigWig released s3://encode-public/2017/09/14/adaf1c00-77d4-4943-9f78-6746595fb776/ENCFF278VQJ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF274DMF fastq fastq reads ENCSR125WOY Control ChIP-seq /fly-donors/ENCDO154AZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39570/'], '@type': ['Target', 'Item'], 'name': 'D-dmelanogaster', 'label': 'D', '@id': '/targets/D-dmelanogaster/', 'title': 'D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2961b7e-8b1b-40c8-bd69-79e37d92bec0', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1400061406 Kevin White, UChicago 5a52e63af0a66e9531883f36c3f18eb6 https://www.encodeproject.org/files/ENCFF274DMF/@@download/ENCFF274DMF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/cd3afc64-105d-46e2-89d6-f76541a34a3b/ENCFF274DMF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF965JUZ bam bam alignments dm3 ENCSR125WOY Control ChIP-seq /fly-donors/ENCDO154AZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39570/'], '@type': ['Target', 'Item'], 'name': 'D-dmelanogaster', 'label': 'D', '@id': '/targets/D-dmelanogaster/', 'title': 'D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2961b7e-8b1b-40c8-bd69-79e37d92bec0', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF274DMF/ 1932787173 Kevin White, UChicago 58c95aa06589648814bc9ef915287c37 https://www.encodeproject.org/files/ENCFF965JUZ/@@download/ENCFF965JUZ.bam released s3://encode-public/2017/09/12/769799ba-4076-42a4-9664-8ade28769197/ENCFF965JUZ.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF507UHO bam bam alignments dm6 ENCSR125WOY Control ChIP-seq /fly-donors/ENCDO154AZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39570/'], '@type': ['Target', 'Item'], 'name': 'D-dmelanogaster', 'label': 'D', '@id': '/targets/D-dmelanogaster/', 'title': 'D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2961b7e-8b1b-40c8-bd69-79e37d92bec0', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF274DMF/ 1920138901 Kevin White, UChicago be5a2d95da8795ebc83bf350079d0da0 https://www.encodeproject.org/files/ENCFF507UHO/@@download/ENCFF507UHO.bam released s3://encode-public/2017/09/13/e2b87d60-c5de-44d1-b310-064267439706/ENCFF507UHO.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF733IKK bigWig bigWig read-depth normalized signal dm3 ENCSR125WOY Control ChIP-seq /fly-donors/ENCDO154AZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39570/'], '@type': ['Target', 'Item'], 'name': 'D-dmelanogaster', 'label': 'D', '@id': '/targets/D-dmelanogaster/', 'title': 'D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2961b7e-8b1b-40c8-bd69-79e37d92bec0', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF965JUZ/ 15653909 Kevin White, UChicago f84cd346d1f34f7ecc4df5c2594b3cfe https://www.encodeproject.org/files/ENCFF733IKK/@@download/ENCFF733IKK.bigWig released s3://encode-public/2017/09/13/5846e331-1ae4-4b91-8dd0-37b98c2bf9e5/ENCFF733IKK.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF074MWN bigWig bigWig signal of unique reads dm3 ENCSR125WOY Control ChIP-seq /fly-donors/ENCDO154AZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39570/'], '@type': ['Target', 'Item'], 'name': 'D-dmelanogaster', 'label': 'D', '@id': '/targets/D-dmelanogaster/', 'title': 'D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2961b7e-8b1b-40c8-bd69-79e37d92bec0', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF965JUZ/ 15704407 Kevin White, UChicago 095a7ecc784e67457b21c75565a63f51 https://www.encodeproject.org/files/ENCFF074MWN/@@download/ENCFF074MWN.bigWig released s3://encode-public/2017/09/13/fa2c0b49-9555-40c5-9b04-8285707c00c1/ENCFF074MWN.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF477PWJ bigWig bigWig signal of unique reads dm6 ENCSR125WOY Control ChIP-seq /fly-donors/ENCDO154AZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39570/'], '@type': ['Target', 'Item'], 'name': 'D-dmelanogaster', 'label': 'D', '@id': '/targets/D-dmelanogaster/', 'title': 'D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2961b7e-8b1b-40c8-bd69-79e37d92bec0', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF507UHO/ 14134711 Kevin White, UChicago 7fb45d3295a174f8b5ba1151c88fd43d https://www.encodeproject.org/files/ENCFF477PWJ/@@download/ENCFF477PWJ.bigWig released s3://encode-public/2017/09/14/060b1e19-1f59-492a-a4b1-46d854c664e1/ENCFF477PWJ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF177GII bigWig bigWig read-depth normalized signal dm6 ENCSR125WOY Control ChIP-seq /fly-donors/ENCDO154AZI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39570/'], '@type': ['Target', 'Item'], 'name': 'D-dmelanogaster', 'label': 'D', '@id': '/targets/D-dmelanogaster/', 'title': 'D (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f2961b7e-8b1b-40c8-bd69-79e37d92bec0', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF507UHO/ 14090453 Kevin White, UChicago 9b1b3e569b56048179aa5f41ab1df895 https://www.encodeproject.org/files/ENCFF177GII/@@download/ENCFF177GII.bigWig released s3://encode-public/2017/09/14/c62a90ce-712b-4553-96a5-a727b0d0098a/ENCFF177GII.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF878DLI fastq fastq reads ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF568ZUY/ 2144657351 Michael Snyder, Stanford 17d867ce963a20e79f7edd36aacd5f5c SRA:SRR6214179 https://www.encodeproject.org/files/ENCFF878DLI/@@download/ENCFF878DLI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/24/0d35e5e4-93c3-421a-8861-d45f53612f6d/ENCFF878DLI.fastq.gz mild to moderate bottlenecking ENCFF568ZUY fastq fastq reads ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF878DLI/ 2427801588 Michael Snyder, Stanford d6eb2494e6cda8ce12a4b5ed2d8143ed SRA:SRR6214179 https://www.encodeproject.org/files/ENCFF568ZUY/@@download/ENCFF568ZUY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/24/f3486a76-65da-46f9-89c8-70e3eb25c7cd/ENCFF568ZUY.fastq.gz mild to moderate bottlenecking ENCFF538WBD bam bam unfiltered alignments GRCh38 ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF878DLI/, /files/ENCFF568ZUY/, /files/ENCFF643CGH/ 4469834267 ENCODE Processing Pipeline 83ede8a53da013aea5531e7cc6184153 https://www.encodeproject.org/files/ENCFF538WBD/@@download/ENCFF538WBD.bam released s3://encode-public/2016/10/27/14ebcfb8-a5cc-49d4-950b-2a85779477d9/ENCFF538WBD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF250TPW bam bam unfiltered alignments hg19 ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF878DLI/, /files/ENCFF568ZUY/, /files/ENCFF807MUK/ 4461968278 ENCODE Processing Pipeline c1f4f09a1aa2689a0a7db7bb2f5767bf https://www.encodeproject.org/files/ENCFF250TPW/@@download/ENCFF250TPW.bam released s3://encode-public/2016/10/27/0d5ac12b-9240-486a-8a21-aad7ce4e9869/ENCFF250TPW.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF607WQU bam bam alignments GRCh38 ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF878DLI/, /files/ENCFF568ZUY/, /files/ENCFF643CGH/ 3506155945 ENCODE Processing Pipeline 1148374cb500dd5a8fed2fbd2959e4a9 https://www.encodeproject.org/files/ENCFF607WQU/@@download/ENCFF607WQU.bam released s3://encode-public/2016/10/27/84af13b9-8f11-40e9-abf5-9129963b4cbd/ENCFF607WQU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF639BGL bam bam alignments hg19 ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF878DLI/, /files/ENCFF568ZUY/, /files/ENCFF807MUK/ 3502540638 ENCODE Processing Pipeline fffbbfd8c600ff15c283609bd1f6859d https://www.encodeproject.org/files/ENCFF639BGL/@@download/ENCFF639BGL.bam released s3://encode-public/2016/10/27/478db255-94cd-4404-84c3-d77682b3c077/ENCFF639BGL.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF856XOE bam bam alignments GRCh38 ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF878DLI/, /files/ENCFF568ZUY/ 3419967562 ENCODE Processing Pipeline b65909f05e9166b4cb38db23c0876d81 https://www.encodeproject.org/files/ENCFF856XOE/@@download/ENCFF856XOE.bam released s3://encode-public/2020/06/02/f94867c3-44b2-45d3-aefb-ad98237ea280/ENCFF856XOE.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF036HWX bam bam unfiltered alignments GRCh38 ENCSR853XCA Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF878DLI/, /files/ENCFF568ZUY/ 4506045502 ENCODE Processing Pipeline cedadd3ee0f09846f48b235abb9b9a07 https://www.encodeproject.org/files/ENCFF036HWX/@@download/ENCFF036HWX.bam released s3://encode-public/2020/06/02/e8fc47c4-ff1a-4f7a-a756-9348baa86607/ENCFF036HWX.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF883ITO fastq fastq reads ENCSR846JYS Control ChIP-seq /fly-donors/ENCDO240XBI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41981/'], '@type': ['Target', 'Item'], 'name': 'pad-dmelanogaster', 'label': 'pad', '@id': '/targets/pad-dmelanogaster/', 'title': 'pad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc21d933-4757-4254-ab5f-a7c047274712', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 601049113 Kevin White, UChicago bce38ac29a9d703206852baa35bf31bf https://www.encodeproject.org/files/ENCFF883ITO/@@download/ENCFF883ITO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/cbdbf3c3-3223-4c64-89a1-944eaf6231ea/ENCFF883ITO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF102EHK bam bam alignments dm3 ENCSR846JYS Control ChIP-seq /fly-donors/ENCDO240XBI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41981/'], '@type': ['Target', 'Item'], 'name': 'pad-dmelanogaster', 'label': 'pad', '@id': '/targets/pad-dmelanogaster/', 'title': 'pad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc21d933-4757-4254-ab5f-a7c047274712', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF883ITO/ 815686235 Kevin White, UChicago ef9103b66e9134af03672e499efdb8ff https://www.encodeproject.org/files/ENCFF102EHK/@@download/ENCFF102EHK.bam released s3://encode-public/2017/09/12/6e9c2303-4bc5-4512-be28-aeabb218a4ed/ENCFF102EHK.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF915YMZ bam bam alignments dm6 ENCSR846JYS Control ChIP-seq /fly-donors/ENCDO240XBI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41981/'], '@type': ['Target', 'Item'], 'name': 'pad-dmelanogaster', 'label': 'pad', '@id': '/targets/pad-dmelanogaster/', 'title': 'pad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc21d933-4757-4254-ab5f-a7c047274712', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF883ITO/ 801156509 Kevin White, UChicago 0a1856131cd97eeeb2eace6b0d520670 https://www.encodeproject.org/files/ENCFF915YMZ/@@download/ENCFF915YMZ.bam released s3://encode-public/2017/09/13/b297fa99-0d32-49f5-be98-2bc246339ab4/ENCFF915YMZ.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF597GMC bigWig bigWig read-depth normalized signal dm3 ENCSR846JYS Control ChIP-seq /fly-donors/ENCDO240XBI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41981/'], '@type': ['Target', 'Item'], 'name': 'pad-dmelanogaster', 'label': 'pad', '@id': '/targets/pad-dmelanogaster/', 'title': 'pad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc21d933-4757-4254-ab5f-a7c047274712', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF102EHK/ 15213536 Kevin White, UChicago 9fc1ab5103d66471c4a9f7532a411e0e https://www.encodeproject.org/files/ENCFF597GMC/@@download/ENCFF597GMC.bigWig released s3://encode-public/2017/09/13/c9938647-6ae3-462a-8a5b-9c34ad4d9b9f/ENCFF597GMC.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF547OAP bigWig bigWig signal of unique reads dm3 ENCSR846JYS Control ChIP-seq /fly-donors/ENCDO240XBI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41981/'], '@type': ['Target', 'Item'], 'name': 'pad-dmelanogaster', 'label': 'pad', '@id': '/targets/pad-dmelanogaster/', 'title': 'pad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc21d933-4757-4254-ab5f-a7c047274712', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF102EHK/ 15198443 Kevin White, UChicago 0045edaba42e1d7308b94a76a8028634 https://www.encodeproject.org/files/ENCFF547OAP/@@download/ENCFF547OAP.bigWig released s3://encode-public/2017/09/13/15b9adcb-db49-4b15-b38d-6096364ccc7d/ENCFF547OAP.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF653ECY bigWig bigWig signal of unique reads dm6 ENCSR846JYS Control ChIP-seq /fly-donors/ENCDO240XBI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41981/'], '@type': ['Target', 'Item'], 'name': 'pad-dmelanogaster', 'label': 'pad', '@id': '/targets/pad-dmelanogaster/', 'title': 'pad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc21d933-4757-4254-ab5f-a7c047274712', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF915YMZ/ 17288606 Kevin White, UChicago 6da69ce600da4dc02ef1be100b582296 https://www.encodeproject.org/files/ENCFF653ECY/@@download/ENCFF653ECY.bigWig released s3://encode-public/2017/09/14/c48f3a25-e7dc-4b7b-8b1c-47bcfa7fd7e0/ENCFF653ECY.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF574PKU bigWig bigWig read-depth normalized signal dm6 ENCSR846JYS Control ChIP-seq /fly-donors/ENCDO240XBI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41981/'], '@type': ['Target', 'Item'], 'name': 'pad-dmelanogaster', 'label': 'pad', '@id': '/targets/pad-dmelanogaster/', 'title': 'pad (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc21d933-4757-4254-ab5f-a7c047274712', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF915YMZ/ 17303097 Kevin White, UChicago 180cec5cc66f6100f28e42d6b9929761 https://www.encodeproject.org/files/ENCFF574PKU/@@download/ENCFF574PKU.bigWig released s3://encode-public/2017/09/14/b3aa1025-ed1a-401a-8746-2a6c88c4d9dc/ENCFF574PKU.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF052LMM fastq fastq reads ENCSR366FCQ Control ChIP-seq /fly-donors/ENCDO354MIH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 659514068 Kevin White, UChicago 494d56bd4783b5a08ac3a88b9ece0c2b https://www.encodeproject.org/files/ENCFF052LMM/@@download/ENCFF052LMM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/2a8e6994-8a2b-4296-8b00-0999c47d94b0/ENCFF052LMM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF225RYJ bam bam alignments dm3 ENCSR366FCQ Control ChIP-seq /fly-donors/ENCDO354MIH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF052LMM/, /files/ENCFF059UHX/ 799727548 Kevin White, UChicago 584e37ad703272837f736824f32b5bfc https://www.encodeproject.org/files/ENCFF225RYJ/@@download/ENCFF225RYJ.bam released s3://encode-public/2016/08/04/ca9830f2-0feb-42a8-a589-ad023ab67252/ENCFF225RYJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF010IVW bam bam alignments dm6 ENCSR366FCQ Control ChIP-seq /fly-donors/ENCDO354MIH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF052LMM/, /files/ENCFF479RCH/ 795616928 Kevin White, UChicago 13e8c000fe715977f84e3c649d80784e https://www.encodeproject.org/files/ENCFF010IVW/@@download/ENCFF010IVW.bam released s3://encode-public/2016/08/04/2f3f99e5-2d66-4996-80a1-19f75ebc7bc7/ENCFF010IVW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF551KCM bigWig bigWig signal of unique reads dm3 ENCSR366FCQ Control ChIP-seq /fly-donors/ENCDO354MIH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF225RYJ/ 15312854 Kevin White, UChicago 470cdfc6b39b33fdc64e4290f61a6b66 https://www.encodeproject.org/files/ENCFF551KCM/@@download/ENCFF551KCM.bigWig released s3://encode-public/2016/08/04/87f23237-3f0f-49e2-a396-4bac80610e4d/ENCFF551KCM.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF954OAR bigWig bigWig read-depth normalized signal dm3 ENCSR366FCQ Control ChIP-seq /fly-donors/ENCDO354MIH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF225RYJ/ 15363800 Kevin White, UChicago 32dc45ca989fd23261a5cac89d9c00d9 https://www.encodeproject.org/files/ENCFF954OAR/@@download/ENCFF954OAR.bigWig released s3://encode-public/2016/08/04/18062aeb-4627-44fe-b2c6-43425bf83d50/ENCFF954OAR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF751OLE bigWig bigWig signal of unique reads dm6 ENCSR366FCQ Control ChIP-seq /fly-donors/ENCDO354MIH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF010IVW/ 17434647 Kevin White, UChicago a55001420af4e032f70e73021736d42f https://www.encodeproject.org/files/ENCFF751OLE/@@download/ENCFF751OLE.bigWig released s3://encode-public/2016/08/04/458cd6e6-6e5c-48b5-8f5f-3b04997b16d3/ENCFF751OLE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF367KPR bigWig bigWig read-depth normalized signal dm6 ENCSR366FCQ Control ChIP-seq /fly-donors/ENCDO354MIH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF010IVW/ 17499186 Kevin White, UChicago 144d9b576f9e1bb80b4391229beacc5d https://www.encodeproject.org/files/ENCFF367KPR/@@download/ENCFF367KPR.bigWig released s3://encode-public/2016/08/04/5eebd3c1-16ed-4e56-a195-4af8b8c7d307/ENCFF367KPR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF454NSM fastq fastq reads ENCSR778ELF Control ChIP-seq /fly-donors/ENCDO376QNO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35260/'], '@type': ['Target', 'Item'], 'name': 'CG10462-dmelanogaster', 'label': 'CG10462', '@id': '/targets/CG10462-dmelanogaster/', 'title': 'CG10462 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '269595f7-1ab3-4e36-92fd-c964f6dc5544', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 730833102 Kevin White, UChicago c95ab2dd2e54cf05e2ad0f845505ab26 https://www.encodeproject.org/files/ENCFF454NSM/@@download/ENCFF454NSM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/09/735bcfb5-9226-4544-8fd3-12d1234785af/ENCFF454NSM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF510RZK bam bam alignments dm3 ENCSR778ELF Control ChIP-seq /fly-donors/ENCDO376QNO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35260/'], '@type': ['Target', 'Item'], 'name': 'CG10462-dmelanogaster', 'label': 'CG10462', '@id': '/targets/CG10462-dmelanogaster/', 'title': 'CG10462 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '269595f7-1ab3-4e36-92fd-c964f6dc5544', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF454NSM/ 886123584 Kevin White, UChicago f4d3c4d54dad98392d5cff31ff9803db https://www.encodeproject.org/files/ENCFF510RZK/@@download/ENCFF510RZK.bam released s3://encode-public/2016/04/11/64355721-53c9-40c0-9adb-b4a6afc736cf/ENCFF510RZK.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF553YJO bigWig bigWig read-depth normalized signal dm3 ENCSR778ELF Control ChIP-seq /fly-donors/ENCDO376QNO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35260/'], '@type': ['Target', 'Item'], 'name': 'CG10462-dmelanogaster', 'label': 'CG10462', '@id': '/targets/CG10462-dmelanogaster/', 'title': 'CG10462 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '269595f7-1ab3-4e36-92fd-c964f6dc5544', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF510RZK/ 15342412 Kevin White, UChicago 6f712f8ac9636aec38ff59cf31ea648e https://www.encodeproject.org/files/ENCFF553YJO/@@download/ENCFF553YJO.bigWig released s3://encode-public/2016/04/11/1406fd73-490b-4bd5-a986-55701310f1d9/ENCFF553YJO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF567JAF bigWig bigWig signal of unique reads dm3 ENCSR778ELF Control ChIP-seq /fly-donors/ENCDO376QNO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35260/'], '@type': ['Target', 'Item'], 'name': 'CG10462-dmelanogaster', 'label': 'CG10462', '@id': '/targets/CG10462-dmelanogaster/', 'title': 'CG10462 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '269595f7-1ab3-4e36-92fd-c964f6dc5544', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF510RZK/ 15310926 Kevin White, UChicago c62ddc95e24945b0819e5a37e8aa8e50 https://www.encodeproject.org/files/ENCFF567JAF/@@download/ENCFF567JAF.bigWig released s3://encode-public/2016/04/11/bd2146f5-10b7-4061-9db7-a798ce6d374b/ENCFF567JAF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF601NDS bam bam alignments dm6 ENCSR778ELF Control ChIP-seq /fly-donors/ENCDO376QNO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35260/'], '@type': ['Target', 'Item'], 'name': 'CG10462-dmelanogaster', 'label': 'CG10462', '@id': '/targets/CG10462-dmelanogaster/', 'title': 'CG10462 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '269595f7-1ab3-4e36-92fd-c964f6dc5544', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF454NSM/ 881831588 Kevin White, UChicago 1ae415f6c0e7153bcabcf41deb052a09 https://www.encodeproject.org/files/ENCFF601NDS/@@download/ENCFF601NDS.bam released s3://encode-public/2016/04/20/6e641d32-30f3-4070-afd3-19d669d88d6b/ENCFF601NDS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF042ALP bigWig bigWig signal of unique reads dm6 ENCSR778ELF Control ChIP-seq /fly-donors/ENCDO376QNO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35260/'], '@type': ['Target', 'Item'], 'name': 'CG10462-dmelanogaster', 'label': 'CG10462', '@id': '/targets/CG10462-dmelanogaster/', 'title': 'CG10462 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '269595f7-1ab3-4e36-92fd-c964f6dc5544', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF601NDS/ 17405285 Kevin White, UChicago 70545928e5051ee869dcda390a16d8b4 https://www.encodeproject.org/files/ENCFF042ALP/@@download/ENCFF042ALP.bigWig released s3://encode-public/2016/06/20/2440eba5-4031-4aa8-b86d-f7f408093816/ENCFF042ALP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF896AGL bigWig bigWig read-depth normalized signal dm6 ENCSR778ELF Control ChIP-seq /fly-donors/ENCDO376QNO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35260/'], '@type': ['Target', 'Item'], 'name': 'CG10462-dmelanogaster', 'label': 'CG10462', '@id': '/targets/CG10462-dmelanogaster/', 'title': 'CG10462 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '269595f7-1ab3-4e36-92fd-c964f6dc5544', 'status': 'released'} dm3 2L 19730094 19749498 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF601NDS/ 17439752 Kevin White, UChicago d4f8112dfb61109a070020b4c7f7ee28 https://www.encodeproject.org/files/ENCFF896AGL/@@download/ENCFF896AGL.bigWig released s3://encode-public/2016/06/20/edd18150-6705-497c-ade8-0245dcc1382f/ENCFF896AGL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF838ADK fastq fastq reads ENCSR245JGC Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF479OCF/ 2565964665 Michael Snyder, Stanford 08b44b262b9cf742de8f7773cdf2e310 SRA:SRR14637726 https://www.encodeproject.org/files/ENCFF838ADK/@@download/ENCFF838ADK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/a3e8d379-2235-4041-afdb-6071ddd225cb/ENCFF838ADK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF479OCF fastq fastq reads ENCSR245JGC Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF838ADK/ 2723908952 Michael Snyder, Stanford 49cce32bc4ad84b8aecdf0661f6f58fe SRA:SRR14637726 https://www.encodeproject.org/files/ENCFF479OCF/@@download/ENCFF479OCF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/18/165db041-981a-4fa5-b343-434a4071bd0c/ENCFF479OCF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF777SHJ bam bam unfiltered alignments GRCh38 ENCSR245JGC Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF838ADK/, /files/ENCFF479OCF/ 4652060451 ENCODE Processing Pipeline 3f878e0350bbc28734c89b4bfb31e8a0 https://www.encodeproject.org/files/ENCFF777SHJ/@@download/ENCFF777SHJ.bam released s3://encode-public/2020/04/20/bffab013-6182-4b19-bbc7-7934a0470655/ENCFF777SHJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF119EPT bam bam alignments GRCh38 ENCSR245JGC Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF838ADK/, /files/ENCFF479OCF/ 2757622519 ENCODE Processing Pipeline 39f16edc65a08253078e2a0bb2dfafc3 https://www.encodeproject.org/files/ENCFF119EPT/@@download/ENCFF119EPT.bam released s3://encode-public/2020/04/20/88e7db06-1924-49bc-ac2f-4d249e4a73cc/ENCFF119EPT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF426HWD fastq fastq reads ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF617WTK/ 2856843312 Michael Snyder, Stanford b2187db0222d3aaa54fc544ed28034a0 SRA:SRR6213054 https://www.encodeproject.org/files/ENCFF426HWD/@@download/ENCFF426HWD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/f3e0672c-f07d-43b5-bf00-c30ab18764da/ENCFF426HWD.fastq.gz ENCFF617WTK fastq fastq reads ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF426HWD/ 2958316470 Michael Snyder, Stanford 7ddfc24cfb5b84ebd5798e76a7fa3feb SRA:SRR6213054 https://www.encodeproject.org/files/ENCFF617WTK/@@download/ENCFF617WTK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/07a9163e-dcc4-4dbf-96fc-0dae69db69b7/ENCFF617WTK.fastq.gz ENCFF118YOS fastq fastq reads ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF257ZET/ 2110941755 Michael Snyder, Stanford cdedfef48df3cd78491d602fc1d20e60 SRA:SRR6213055 https://www.encodeproject.org/files/ENCFF118YOS/@@download/ENCFF118YOS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/9a0794eb-0ff1-4087-9fcd-46d7b785af46/ENCFF118YOS.fastq.gz ENCFF257ZET fastq fastq reads ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF118YOS/ 2195027983 Michael Snyder, Stanford 331d6fb9d75126fdfaa0ea402fb09841 SRA:SRR6213055 https://www.encodeproject.org/files/ENCFF257ZET/@@download/ENCFF257ZET.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/10/d28e3839-70e5-4407-83ef-10b75f68bd65/ENCFF257ZET.fastq.gz ENCFF755KSX bam bam unfiltered alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF257ZET/, /files/ENCFF118YOS/ 4937670466 ENCODE Processing Pipeline c8a10efd43cd5eaf40e9fbbaa439b594 https://www.encodeproject.org/files/ENCFF755KSX/@@download/ENCFF755KSX.bam released s3://encode-public/2016/12/15/bc5ec64d-493a-4342-9ff4-24a79bafc00a/ENCFF755KSX.bam ENCODE3 GRCh38 archived ENCFF033KKL bam bam unfiltered alignments hg19 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF257ZET/, /files/ENCFF118YOS/ 4925807199 ENCODE Processing Pipeline de0b7d9a9469a118f65dfb6944739703 https://www.encodeproject.org/files/ENCFF033KKL/@@download/ENCFF033KKL.bam released s3://encode-public/2016/12/15/6092d254-4979-4084-a3bd-ee91e2a28a65/ENCFF033KKL.bam ENCODE3 hg19 archived ENCFF731XOB bam bam alignments hg19 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF257ZET/, /files/ENCFF118YOS/ 3846093453 ENCODE Processing Pipeline e5d4f8ce9bf8703c2529efd50c8d7314 https://www.encodeproject.org/files/ENCFF731XOB/@@download/ENCFF731XOB.bam released s3://encode-public/2016/12/15/bda96662-76e7-41ac-ad6f-d80cd039e72f/ENCFF731XOB.bam ENCODE3 hg19 archived ENCFF290UZX bam bam alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF257ZET/, /files/ENCFF118YOS/ 3852047327 ENCODE Processing Pipeline 18d5919660da2eb136dde81ee426c337 https://www.encodeproject.org/files/ENCFF290UZX/@@download/ENCFF290UZX.bam released s3://encode-public/2016/12/15/e04102fd-1aba-4bf1-b9a3-72a9eee7f82a/ENCFF290UZX.bam ENCODE3 GRCh38 archived ENCFF474GXI bam bam unfiltered alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF426HWD/, /files/ENCFF617WTK/, /files/ENCFF643CGH/ 6499478068 ENCODE Processing Pipeline 616dd7b875bcf5d7bd14fb761170afeb https://www.encodeproject.org/files/ENCFF474GXI/@@download/ENCFF474GXI.bam released s3://encode-public/2016/12/15/64af848c-bc51-40c6-80d7-a1adeaf64e63/ENCFF474GXI.bam ENCODE3 GRCh38 archived ENCFF749SPL bam bam unfiltered alignments hg19 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF426HWD/, /files/ENCFF807MUK/, /files/ENCFF617WTK/ 6480627643 ENCODE Processing Pipeline 9d6cf8e7ee5927743675bb302ab06655 https://www.encodeproject.org/files/ENCFF749SPL/@@download/ENCFF749SPL.bam released s3://encode-public/2016/12/15/87a165bc-0ef7-4c98-9034-a16bf0b3265c/ENCFF749SPL.bam ENCODE3 hg19 archived ENCFF007DGT bam bam alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF426HWD/, /files/ENCFF617WTK/, /files/ENCFF643CGH/ 5113742941 ENCODE Processing Pipeline 1b1ffb09cb50c6fb882206f9a80edfb3 https://www.encodeproject.org/files/ENCFF007DGT/@@download/ENCFF007DGT.bam released s3://encode-public/2016/12/15/f80b92d8-8a6e-4d81-8a4a-95c064c1c610/ENCFF007DGT.bam ENCODE3 GRCh38 archived ENCFF834FWS bam bam alignments hg19 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF426HWD/, /files/ENCFF807MUK/, /files/ENCFF617WTK/ 5106287428 ENCODE Processing Pipeline 099fafadc69079140f802db452f1d37f https://www.encodeproject.org/files/ENCFF834FWS/@@download/ENCFF834FWS.bam released s3://encode-public/2016/12/15/8dad28b2-858e-411a-9553-5269f13ba57a/ENCFF834FWS.bam ENCODE3 hg19 archived ENCFF232WKB bam bam unfiltered alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF426HWD/, /files/ENCFF617WTK/ 6488728141 ENCODE Processing Pipeline ecae24b694878bdfa9f00e4aef53845b https://www.encodeproject.org/files/ENCFF232WKB/@@download/ENCFF232WKB.bam released s3://encode-public/2020/06/03/59f130a1-9b27-4d61-bb04-b03a7f3262d7/ENCFF232WKB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF881MZQ bam bam unfiltered alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF118YOS/, /files/ENCFF257ZET/ 4928585969 ENCODE Processing Pipeline 3051eabb10810217306603d132b3e3d1 https://www.encodeproject.org/files/ENCFF881MZQ/@@download/ENCFF881MZQ.bam released s3://encode-public/2020/06/03/3bee22c7-c28e-44f5-b6fd-300ddf9c7e80/ENCFF881MZQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF059UUX bam bam alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF118YOS/, /files/ENCFF257ZET/ 3811814839 ENCODE Processing Pipeline 7f89e5e683ebc3139f257a98d94b566c https://www.encodeproject.org/files/ENCFF059UUX/@@download/ENCFF059UUX.bam released s3://encode-public/2020/06/03/a8228ed8-3127-4a63-aec9-91e11e4b81e3/ENCFF059UUX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF492YED bam bam alignments GRCh38 ENCSR061MKW Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF426HWD/, /files/ENCFF617WTK/ 5076822202 ENCODE Processing Pipeline 29e3a910bd29ca64ed9f49d20adfe6c4 https://www.encodeproject.org/files/ENCFF492YED/@@download/ENCFF492YED.bam released s3://encode-public/2020/06/03/26aa28bb-9ec7-4638-a80f-89672e200817/ENCFF492YED.bam ENCODE4 v1.4.0 GRCh38 released ENCFF410PHD fastq fastq reads ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF368UOC/ 2310761683 Michael Snyder, Stanford f32d04eccb847d2e32525552e44e0724 SRA:SRR5111919 https://www.encodeproject.org/files/ENCFF410PHD/@@download/ENCFF410PHD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/24/53e87297-e482-41d0-9a01-870ad0226400/ENCFF410PHD.fastq.gz mild to moderate bottlenecking ENCFF368UOC fastq fastq reads ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF410PHD/ 2334122166 Michael Snyder, Stanford 7b9d57d9b558fbe2ba72ae8a434bbf25 SRA:SRR5111919 https://www.encodeproject.org/files/ENCFF368UOC/@@download/ENCFF368UOC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/24/5c7fdce4-7efd-4394-ab52-05ebda26e612/ENCFF368UOC.fastq.gz mild to moderate bottlenecking ENCFF608MDV fastq fastq reads ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF240DTE/ 3163559733 Michael Snyder, Stanford 68263c99784485eabff2837752575b44 SRA:SRR5111920 https://www.encodeproject.org/files/ENCFF608MDV/@@download/ENCFF608MDV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/24/bc8891ae-7597-46ff-beec-821cb94f98b9/ENCFF608MDV.fastq.gz mild to moderate bottlenecking ENCFF240DTE fastq fastq reads ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF608MDV/ 3139629587 Michael Snyder, Stanford bc397b8cb479f86ce832ff83571f9a20 SRA:SRR5111920 https://www.encodeproject.org/files/ENCFF240DTE/@@download/ENCFF240DTE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/24/7b805644-0ecc-4315-8a28-eea46fa43e92/ENCFF240DTE.fastq.gz mild to moderate bottlenecking ENCFF330DXJ bam bam unfiltered alignments hg19 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF410PHD/, /files/ENCFF368UOC/ 4960351755 ENCODE Processing Pipeline 8bef548a71629b9f0dbb53ecb0580e00 https://www.encodeproject.org/files/ENCFF330DXJ/@@download/ENCFF330DXJ.bam released s3://encode-public/2016/10/27/ae956501-7d1b-4b87-be9d-81ac8c76b24b/ENCFF330DXJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF069LEG bam bam unfiltered alignments hg19 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF240DTE/, /files/ENCFF608MDV/, /files/ENCFF807MUK/ 6726260371 ENCODE Processing Pipeline 5400c588309be64827ac185dad7c2a20 https://www.encodeproject.org/files/ENCFF069LEG/@@download/ENCFF069LEG.bam released s3://encode-public/2016/10/27/d2e11102-4468-4450-b2d9-ecbe96b636ec/ENCFF069LEG.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF506DFV bam bam alignments hg19 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF410PHD/, /files/ENCFF368UOC/ 3952970114 ENCODE Processing Pipeline 8c862ed8c8ab58054cc280ce26cf6423 https://www.encodeproject.org/files/ENCFF506DFV/@@download/ENCFF506DFV.bam released s3://encode-public/2016/10/27/1015f499-e5ec-4a10-bede-99884414c50f/ENCFF506DFV.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF262CJE bam bam alignments hg19 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF240DTE/, /files/ENCFF608MDV/, /files/ENCFF807MUK/ 5666725150 ENCODE Processing Pipeline 5cf2f7558e262228ad827303545f1919 https://www.encodeproject.org/files/ENCFF262CJE/@@download/ENCFF262CJE.bam released s3://encode-public/2016/10/27/d91f19c1-de0c-4e7e-9ab0-46ed142b8458/ENCFF262CJE.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF584IGM bam bam unfiltered alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF410PHD/, /files/ENCFF368UOC/ 4964047308 ENCODE Processing Pipeline f145fd9f91b1b1e313b01d3406d323f7 https://www.encodeproject.org/files/ENCFF584IGM/@@download/ENCFF584IGM.bam released s3://encode-public/2016/10/27/c671f11f-95db-477f-973c-a3fc9b0628d1/ENCFF584IGM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF997PGK bam bam unfiltered alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF240DTE/, /files/ENCFF608MDV/, /files/ENCFF643CGH/ 6732792354 ENCODE Processing Pipeline 2453ad8725a375e3b4844542a75afe97 https://www.encodeproject.org/files/ENCFF997PGK/@@download/ENCFF997PGK.bam released s3://encode-public/2016/10/27/1efde59d-ac35-4476-8624-81f579386242/ENCFF997PGK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF796JTX bam bam alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF410PHD/, /files/ENCFF368UOC/ 3955590080 ENCODE Processing Pipeline cbb4d9c222cabcdd442d634a51bdd31b https://www.encodeproject.org/files/ENCFF796JTX/@@download/ENCFF796JTX.bam released s3://encode-public/2016/10/27/4fe02d75-4dbe-469d-915b-724033169bca/ENCFF796JTX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF720AUK bam bam alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 101 /files/ENCFF240DTE/, /files/ENCFF608MDV/, /files/ENCFF643CGH/ 5670864736 ENCODE Processing Pipeline a060c4bd42f6171710e157903a4d7c23 https://www.encodeproject.org/files/ENCFF720AUK/@@download/ENCFF720AUK.bam released s3://encode-public/2016/10/27/d741d78a-bd33-4774-b96c-081b575b5e0e/ENCFF720AUK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF284FPS bam bam unfiltered alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF410PHD/, /files/ENCFF368UOC/ 4948227793 ENCODE Processing Pipeline 3dfae00a16984a7990f944a6a3b2bad1 https://www.encodeproject.org/files/ENCFF284FPS/@@download/ENCFF284FPS.bam released s3://encode-public/2020/06/02/76341f2b-0d1b-4e0f-9186-65d25fc75438/ENCFF284FPS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF628INW bam bam alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF410PHD/, /files/ENCFF368UOC/ 3860788250 ENCODE Processing Pipeline 89d0100eab52f46e14670ea338c5a911 https://www.encodeproject.org/files/ENCFF628INW/@@download/ENCFF628INW.bam released s3://encode-public/2020/06/02/552c63b5-a08a-4025-9db0-6f864b06f196/ENCFF628INW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF072BKN bam bam alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF240DTE/, /files/ENCFF608MDV/ 5549323960 ENCODE Processing Pipeline 7feba1c2a8a325610a59d3f557cad040 https://www.encodeproject.org/files/ENCFF072BKN/@@download/ENCFF072BKN.bam released s3://encode-public/2020/06/02/744e7d31-9f73-43c8-b89d-18de6b047caf/ENCFF072BKN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF751UGE bam bam unfiltered alignments GRCh38 ENCSR658AGP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-11-01 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF240DTE/, /files/ENCFF608MDV/ 6706907961 ENCODE Processing Pipeline 6bc271cca972c4852680913a7ca6b6cb https://www.encodeproject.org/files/ENCFF751UGE/@@download/ENCFF751UGE.bam released s3://encode-public/2020/06/02/dbf7deea-8862-4c2c-b78a-9bbc174600b5/ENCFF751UGE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF306WME fastq fastq reads ENCSR471NZA Control ChIP-seq /worm-donors/ENCDO368BJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172788/'], '@type': ['Target', 'Item'], 'name': 'ahr-1-celegans', 'label': 'ahr-1', '@id': '/targets/ahr-1-celegans/', 'title': 'ahr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41031c12-f6f2-4352-9c88-0dfbe31c07d6', 'status': 'released'} ce10 I 9507045 9543284 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 605491871 Kevin White, UChicago 22108fb11dc1effccc3dba4dda68de6f https://www.encodeproject.org/files/ENCFF306WME/@@download/ENCFF306WME.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/05/09/30f2d743-f1f7-4799-9099-dab422f6e836/ENCFF306WME.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF597YVM bam bam alignments ce10 ENCSR471NZA Control ChIP-seq /worm-donors/ENCDO368BJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172788/'], '@type': ['Target', 'Item'], 'name': 'ahr-1-celegans', 'label': 'ahr-1', '@id': '/targets/ahr-1-celegans/', 'title': 'ahr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41031c12-f6f2-4352-9c88-0dfbe31c07d6', 'status': 'released'} ce10 I 9507045 9543284 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF306WME/ 720023201 Kevin White, UChicago 133917e895d68928bd3654015bf7d4b7 https://www.encodeproject.org/files/ENCFF597YVM/@@download/ENCFF597YVM.bam released s3://encode-public/2016/05/10/7a7cd703-94cc-47d9-95eb-b3b977b34f9c/ENCFF597YVM.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF871LNO bam bam alignments ce11 ENCSR471NZA Control ChIP-seq /worm-donors/ENCDO368BJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172788/'], '@type': ['Target', 'Item'], 'name': 'ahr-1-celegans', 'label': 'ahr-1', '@id': '/targets/ahr-1-celegans/', 'title': 'ahr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41031c12-f6f2-4352-9c88-0dfbe31c07d6', 'status': 'released'} ce10 I 9507045 9543284 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF306WME/ 720623432 Kevin White, UChicago 60c4e45998780038fcee86d696459ba5 https://www.encodeproject.org/files/ENCFF871LNO/@@download/ENCFF871LNO.bam released s3://encode-public/2016/05/10/ece6332d-b7f4-4555-8bfb-f56c25da14f4/ENCFF871LNO.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF150YPU bigWig bigWig signal of unique reads ce10 ENCSR471NZA Control ChIP-seq /worm-donors/ENCDO368BJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 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/worm-donors/ENCDO368BJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172788/'], '@type': ['Target', 'Item'], 'name': 'ahr-1-celegans', 'label': 'ahr-1', '@id': '/targets/ahr-1-celegans/', 'title': 'ahr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41031c12-f6f2-4352-9c88-0dfbe31c07d6', 'status': 'released'} ce10 I 9507045 9543284 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF597YVM/ 9945992 Kevin White, UChicago c6b1e13f21be3956ae3e273b7e4b22fb https://www.encodeproject.org/files/ENCFF005XXC/@@download/ENCFF005XXC.bigWig released s3://encode-public/2016/05/11/d463254f-f542-4dd7-8002-5b93f15e8344/ENCFF005XXC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF815KIV bigWig bigWig read-depth normalized signal ce11 ENCSR471NZA Control ChIP-seq /worm-donors/ENCDO368BJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172788/'], '@type': ['Target', 'Item'], 'name': 'ahr-1-celegans', 'label': 'ahr-1', '@id': '/targets/ahr-1-celegans/', 'title': 'ahr-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '41031c12-f6f2-4352-9c88-0dfbe31c07d6', 'status': 'released'} ce10 I 9507045 9543284 DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF871LNO/ 9940660 Kevin White, UChicago e2cf0a874b0fed8b59df718459dd8587 https://www.encodeproject.org/files/ENCFF815KIV/@@download/ENCFF815KIV.bigWig released s3://encode-public/2016/05/11/f6c786ab-83a8-4981-8389-337715c74853/ENCFF815KIV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF764RPG bigWig bigWig signal of unique reads ce11 ENCSR471NZA Control ChIP-seq /worm-donors/ENCDO368BJQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172788/'], '@type': ['Target', 'Item'], 'name': 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https://www.encodeproject.org/files/ENCFF183XHS/@@download/ENCFF183XHS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/ff767559-0de2-41ae-9b16-49a5a1fd12a8/ENCFF183XHS.fastq.gz ENCFF610QSY fastq fastq reads ENCSR062MVC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF183XHS/ 2085802590 Michael Snyder, Stanford a63a58147236e876b62d960c54a9cb68 SRA:SRR6213069 https://www.encodeproject.org/files/ENCFF610QSY/@@download/ENCFF610QSY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/05/18fd2aac-bd22-4658-b36d-038d964c4d49/ENCFF610QSY.fastq.gz ENCFF225JCI bam bam unfiltered alignments GRCh38 ENCSR062MVC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF610QSY/, /files/ENCFF183XHS/, /files/ENCFF643CGH/ 4547715803 ENCODE Processing 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/files/ENCFF807MUK/ 4538503620 ENCODE Processing Pipeline 7d762d14da905d9622110ea1f4464b00 https://www.encodeproject.org/files/ENCFF028FXY/@@download/ENCFF028FXY.bam released s3://encode-public/2016/12/07/e4a95e4c-3a33-4416-b1af-ca8eb1b8a547/ENCFF028FXY.bam ENCODE3 hg19 archived ENCFF080TZU bam bam alignments hg19 ENCSR062MVC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF610QSY/, /files/ENCFF183XHS/, /files/ENCFF807MUK/ 3730910239 ENCODE Processing Pipeline d27b93da0f756a61c0afd9f6a5073136 https://www.encodeproject.org/files/ENCFF080TZU/@@download/ENCFF080TZU.bam released s3://encode-public/2016/12/07/2c229dac-0804-459c-a915-f97999ffb710/ENCFF080TZU.bam ENCODE3 hg19 archived ENCFF673QRJ bam bam unfiltered alignments GRCh38 ENCSR062MVC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF610QSY/, /files/ENCFF183XHS/ 4541950926 ENCODE Processing Pipeline 1ae548f5c34405e32fe9848107965842 https://www.encodeproject.org/files/ENCFF673QRJ/@@download/ENCFF673QRJ.bam released s3://encode-public/2020/06/03/69d05e2f-793f-452b-999f-9e27d6d4615e/ENCFF673QRJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF469AXC bam bam alignments GRCh38 ENCSR062MVC Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF610QSY/, /files/ENCFF183XHS/ 3687989459 ENCODE Processing Pipeline c64200d40cd47e25205446e45f8cadc9 https://www.encodeproject.org/files/ENCFF469AXC/@@download/ENCFF469AXC.bam released s3://encode-public/2020/06/03/1dc818ad-c61c-406a-a859-725328e5701e/ENCFF469AXC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF050IAV fastq fastq reads ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF570XLQ/ 2875303982 Michael Snyder, Stanford 6d6291faee1abde84a9bdfdac0aa211d SRA:SRR5111422 https://www.encodeproject.org/files/ENCFF050IAV/@@download/ENCFF050IAV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/fb54d4b7-e53e-43e6-a504-3bd6976194fb/ENCFF050IAV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF570XLQ fastq fastq reads ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF050IAV/ 2918147596 Michael Snyder, Stanford 4d7a773c79476b9cdc1ca642ec48e9a9 SRA:SRR5111422 https://www.encodeproject.org/files/ENCFF570XLQ/@@download/ENCFF570XLQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/0a1ffb00-dbbf-4725-96b7-514018742566/ENCFF570XLQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF946RZC bam bam unfiltered alignments hg19 ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF570XLQ/, /files/ENCFF807MUK/, /files/ENCFF050IAV/ 5919990706 ENCODE Processing Pipeline c9bc5defc3806c4107e9a0a144e39f6e https://www.encodeproject.org/files/ENCFF946RZC/@@download/ENCFF946RZC.bam released s3://encode-public/2016/09/11/8713b6f5-7727-415b-a62f-b86672c3f6c4/ENCFF946RZC.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF648FLA bam bam unfiltered alignments GRCh38 ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF570XLQ/, /files/ENCFF643CGH/, /files/ENCFF050IAV/ 5929162531 ENCODE Processing Pipeline 8d41fda6a23f6a502b0c88cf315d8d51 https://www.encodeproject.org/files/ENCFF648FLA/@@download/ENCFF648FLA.bam released s3://encode-public/2016/09/11/e9349f21-5204-4085-9e63-89747354623f/ENCFF648FLA.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF581EMT bam bam alignments GRCh38 ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF570XLQ/, /files/ENCFF643CGH/, /files/ENCFF050IAV/ 4943937455 ENCODE Processing Pipeline dde1ded2ceabe1a2052d91fb1052cc6e https://www.encodeproject.org/files/ENCFF581EMT/@@download/ENCFF581EMT.bam released s3://encode-public/2016/09/11/9f160640-4f0f-4253-be64-304689ec9b8c/ENCFF581EMT.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF311OFN bam bam alignments hg19 ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF570XLQ/, /files/ENCFF807MUK/, /files/ENCFF050IAV/ 4940829702 ENCODE Processing Pipeline 4dced645600b01b18d0297dccc83158a https://www.encodeproject.org/files/ENCFF311OFN/@@download/ENCFF311OFN.bam released s3://encode-public/2016/09/11/5a334bff-05a7-411c-a93b-4637d9d0aa2d/ENCFF311OFN.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF351XXS bam bam unfiltered alignments GRCh38 ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF050IAV/, /files/ENCFF570XLQ/ 6010103665 ENCODE Processing Pipeline 2dfa809bf2864409de08029e2d04b1a3 https://www.encodeproject.org/files/ENCFF351XXS/@@download/ENCFF351XXS.bam released s3://encode-public/2020/06/02/3b0caac0-79ca-4774-9cf0-d2c13c9f33f3/ENCFF351XXS.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF451CVJ bam bam alignments GRCh38 ENCSR311DYU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/168850/'], '@type': ['Target', 'Item'], 'name': 'ZNF800-human', 'label': 'ZNF800', '@id': '/targets/ZNF800-human/', 'title': 'ZNF800 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '767aef11-bd84-44f5-98d5-7cec182bafce', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF050IAV/, /files/ENCFF570XLQ/ 5013821514 ENCODE Processing Pipeline 64e5a84c1ae2ed2fd34a85fb128d5aeb https://www.encodeproject.org/files/ENCFF451CVJ/@@download/ENCFF451CVJ.bam released s3://encode-public/2020/06/02/842d9d1c-dfb2-440e-a991-05e7d2b344a7/ENCFF451CVJ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF284UST fastq fastq reads ENCSR506LYS Control ChIP-seq /fly-donors/ENCDO755VDV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42363/'], '@type': ['Target', 'Item'], 'name': 'CG17186-dmelanogaster', 'label': 'CG17186', '@id': '/targets/CG17186-dmelanogaster/', 'title': 'CG17186 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '55451336-0cb1-4593-bb0b-6f463bedce95', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 437051964 Kevin White, UChicago 877391aa2f31e0dfac05c8c0b7303055 https://www.encodeproject.org/files/ENCFF284UST/@@download/ENCFF284UST.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/ad3150c9-253c-436f-a730-2874cd58fba0/ENCFF284UST.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF364EGY bam bam alignments dm3 ENCSR506LYS Control ChIP-seq /fly-donors/ENCDO755VDV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42363/'], '@type': ['Target', 'Item'], 'name': 'CG17186-dmelanogaster', 'label': 'CG17186', '@id': '/targets/CG17186-dmelanogaster/', 'title': 'CG17186 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '55451336-0cb1-4593-bb0b-6f463bedce95', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF284UST/ 584342933 Kevin White, UChicago 88b8816bdcd641632835cef64f60379a https://www.encodeproject.org/files/ENCFF364EGY/@@download/ENCFF364EGY.bam released s3://encode-public/2017/09/12/97b55538-79cd-4a0c-a399-ec87c96d3ccf/ENCFF364EGY.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF130YFM bam bam alignments dm6 ENCSR506LYS Control ChIP-seq /fly-donors/ENCDO755VDV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42363/'], '@type': ['Target', 'Item'], 'name': 'CG17186-dmelanogaster', 'label': 'CG17186', '@id': '/targets/CG17186-dmelanogaster/', 'title': 'CG17186 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '55451336-0cb1-4593-bb0b-6f463bedce95', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF284UST/ 580656409 Kevin White, UChicago 29ad0414ab7f6ea6277b3dfd6fa1b183 https://www.encodeproject.org/files/ENCFF130YFM/@@download/ENCFF130YFM.bam released s3://encode-public/2017/09/13/71ddb725-5e7e-4280-83c0-f4554eb19363/ENCFF130YFM.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF408GGN bigWig bigWig read-depth normalized signal dm3 ENCSR506LYS Control ChIP-seq /fly-donors/ENCDO755VDV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42363/'], '@type': ['Target', 'Item'], 'name': 'CG17186-dmelanogaster', 'label': 'CG17186', '@id': '/targets/CG17186-dmelanogaster/', 'title': 'CG17186 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '55451336-0cb1-4593-bb0b-6f463bedce95', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF364EGY/ 15312160 Kevin White, UChicago 5ebdf05bd762f22b5552c2581a54d4ae https://www.encodeproject.org/files/ENCFF408GGN/@@download/ENCFF408GGN.bigWig released s3://encode-public/2017/09/13/cf4453e5-f411-4924-8236-211e4b69072c/ENCFF408GGN.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF412VUS bigWig bigWig signal of unique reads dm3 ENCSR506LYS Control ChIP-seq /fly-donors/ENCDO755VDV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42363/'], '@type': ['Target', 'Item'], 'name': 'CG17186-dmelanogaster', 'label': 'CG17186', '@id': '/targets/CG17186-dmelanogaster/', 'title': 'CG17186 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '55451336-0cb1-4593-bb0b-6f463bedce95', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF364EGY/ 15289568 Kevin White, UChicago 94ce66b2b9301d9ecf8900b5b8f7f352 https://www.encodeproject.org/files/ENCFF412VUS/@@download/ENCFF412VUS.bigWig released s3://encode-public/2017/09/13/e7932375-f62a-4467-81d5-7339db297e69/ENCFF412VUS.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF267DUC bigWig bigWig read-depth normalized signal dm6 ENCSR506LYS Control ChIP-seq /fly-donors/ENCDO755VDV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42363/'], '@type': ['Target', 'Item'], 'name': 'CG17186-dmelanogaster', 'label': 'CG17186', '@id': '/targets/CG17186-dmelanogaster/', 'title': 'CG17186 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '55451336-0cb1-4593-bb0b-6f463bedce95', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF130YFM/ 17530447 Kevin White, UChicago c88aaf0aca863d60254ebb9d1d0417d4 https://www.encodeproject.org/files/ENCFF267DUC/@@download/ENCFF267DUC.bigWig released s3://encode-public/2017/09/14/1698bbb9-02c5-4f5b-b367-0ecfae535659/ENCFF267DUC.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF367VXM bigWig bigWig signal of unique reads dm6 ENCSR506LYS Control ChIP-seq /fly-donors/ENCDO755VDV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42363/'], '@type': ['Target', 'Item'], 'name': 'CG17186-dmelanogaster', 'label': 'CG17186', '@id': '/targets/CG17186-dmelanogaster/', 'title': 'CG17186 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '55451336-0cb1-4593-bb0b-6f463bedce95', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF130YFM/ 17507565 Kevin White, UChicago 98bd114315cd2b9fbffc148db10cabae https://www.encodeproject.org/files/ENCFF367VXM/@@download/ENCFF367VXM.bigWig released s3://encode-public/2017/09/14/817e3d30-768c-45b9-bf61-66dea2a7ef6d/ENCFF367VXM.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF449AND fastq fastq reads ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF133DKP/ 2204129248 Michael Snyder, Stanford c5c8851c69ffe9233d2e737ff03bba43 SRA:SRR6213682 https://www.encodeproject.org/files/ENCFF449AND/@@download/ENCFF449AND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/2a31df0b-3cdc-49a4-8660-f1155cf4c0dd/ENCFF449AND.fastq.gz mild to moderate bottlenecking ENCFF134YMP bam bam unfiltered alignments hg19 ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 101 /files/ENCFF133DKP/, /files/ENCFF807MUK/, /files/ENCFF449AND/ 4217707071 ENCODE Processing Pipeline 50918518c590366bb2040cfe3bb80822 https://www.encodeproject.org/files/ENCFF134YMP/@@download/ENCFF134YMP.bam released s3://encode-public/2016/10/27/ebe84dcd-039b-4e12-961d-044811ad1582/ENCFF134YMP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF133DKP fastq fastq reads ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF449AND/ 2424850493 Michael Snyder, Stanford e6d13fd368076060580dfdf614786557 SRA:SRR6213682 https://www.encodeproject.org/files/ENCFF133DKP/@@download/ENCFF133DKP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/14/6a2b5d28-0b3a-4782-89b0-c0f9af1da1ad/ENCFF133DKP.fastq.gz mild to moderate bottlenecking ENCFF695MWS bam bam unfiltered alignments GRCh38 ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 101 /files/ENCFF133DKP/, /files/ENCFF643CGH/, /files/ENCFF449AND/ 4220261065 ENCODE Processing Pipeline a3d43788d37c938f63392847395e5c08 https://www.encodeproject.org/files/ENCFF695MWS/@@download/ENCFF695MWS.bam released s3://encode-public/2016/10/27/fb0f7968-7e7b-49a8-a8b5-3a26e65550a0/ENCFF695MWS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF576CMR bam bam alignments GRCh38 ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 101 /files/ENCFF133DKP/, /files/ENCFF643CGH/, /files/ENCFF449AND/ 2937005809 ENCODE Processing Pipeline 27944a509f58f2a1eb68febb8696e07f https://www.encodeproject.org/files/ENCFF576CMR/@@download/ENCFF576CMR.bam released s3://encode-public/2016/10/27/0799d5d0-2d60-447a-a377-cffc662ec180/ENCFF576CMR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF385SNU bam bam alignments hg19 ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 101 /files/ENCFF133DKP/, /files/ENCFF807MUK/, /files/ENCFF449AND/ 2930269780 ENCODE Processing Pipeline 1eae4c837c9b18f79244a9ea76be9066 https://www.encodeproject.org/files/ENCFF385SNU/@@download/ENCFF385SNU.bam released s3://encode-public/2016/10/27/7607f5ef-efc7-4e5b-97c9-8527ced91eea/ENCFF385SNU.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF859GDQ bam bam unfiltered alignments GRCh38 ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF449AND/, /files/ENCFF133DKP/ 4293727855 ENCODE Processing Pipeline c04245f1f85ec4ecb4ae4f2cedf5f473 https://www.encodeproject.org/files/ENCFF859GDQ/@@download/ENCFF859GDQ.bam released s3://encode-public/2020/06/02/3476e570-1435-40fd-8c1a-9c45ede4e963/ENCFF859GDQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF339FBM bam bam alignments GRCh38 ENCSR480WKY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-06-23 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF449AND/, /files/ENCFF133DKP/ 2841382629 ENCODE Processing Pipeline 83282512c6f62c206e9b9b8b44da6bdc https://www.encodeproject.org/files/ENCFF339FBM/@@download/ENCFF339FBM.bam released s3://encode-public/2020/06/02/f84da3b4-3a54-4f78-b158-cc841f2e6a1a/ENCFF339FBM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF794JUL fastq fastq reads ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF674OUR/ 3198006297 Michael Snyder, Stanford 366453487f46f68f64fabe647a25cc7d SRA:SRR5111329 https://www.encodeproject.org/files/ENCFF794JUL/@@download/ENCFF794JUL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/5a7f7b07-bb13-4d08-bbb6-4484d14090e3/ENCFF794JUL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF674OUR fastq fastq reads ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF794JUL/ 3258020102 Michael Snyder, Stanford 11a5b2cbe57f454758f7d622e5cc4858 SRA:SRR5111329 https://www.encodeproject.org/files/ENCFF674OUR/@@download/ENCFF674OUR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/24/0418363f-313e-47ff-93a0-db2f6bd07086/ENCFF674OUR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF485ECD bam bam unfiltered alignments hg19 ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF674OUR/, /files/ENCFF794JUL/, /files/ENCFF807MUK/ 6466032704 ENCODE Processing Pipeline c2d2fac437088cf29798e0959960b047 https://www.encodeproject.org/files/ENCFF485ECD/@@download/ENCFF485ECD.bam released s3://encode-public/2016/09/11/8bae8f73-b6ca-4a75-8d3e-dd3ae058792c/ENCFF485ECD.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF995GXI bam bam unfiltered alignments GRCh38 ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF674OUR/, /files/ENCFF794JUL/, /files/ENCFF643CGH/ 6474924687 ENCODE Processing Pipeline 180bd5c86af81237bd7c6dbfe9b8886a https://www.encodeproject.org/files/ENCFF995GXI/@@download/ENCFF995GXI.bam released s3://encode-public/2016/09/11/ce5cd332-23b9-4588-879e-2d1d51ee58d1/ENCFF995GXI.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF724IJF bam bam alignments hg19 ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF674OUR/, /files/ENCFF794JUL/, /files/ENCFF807MUK/ 5468035736 ENCODE Processing Pipeline c6a39206c00bc8622ede3baadede35ab https://www.encodeproject.org/files/ENCFF724IJF/@@download/ENCFF724IJF.bam released s3://encode-public/2016/09/11/acf62a66-15bf-4470-adf0-c1a631ceb4cb/ENCFF724IJF.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF015LOP bam bam alignments GRCh38 ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF674OUR/, /files/ENCFF794JUL/, /files/ENCFF643CGH/ 5471714224 ENCODE Processing Pipeline 5f1d08ecc2cd536c3140d8d525c5df30 https://www.encodeproject.org/files/ENCFF015LOP/@@download/ENCFF015LOP.bam released s3://encode-public/2016/09/11/60516235-d4f8-43b9-937c-a4eb018b1748/ENCFF015LOP.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF482RWP bam bam alignments GRCh38 ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF794JUL/, /files/ENCFF674OUR/ 5527590240 ENCODE Processing Pipeline d1309931ef27788d244db518abea423e https://www.encodeproject.org/files/ENCFF482RWP/@@download/ENCFF482RWP.bam released s3://encode-public/2020/06/02/e9eda925-909c-40b2-b0a7-63db5591b141/ENCFF482RWP.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF652MZE bam bam unfiltered alignments GRCh38 ENCSR260MAS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:ZBTB1'], 'aliases': ['michael-snyder:TS-1379'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22890/'], '@type': ['Target', 'Item'], 'label': 'ZBTB1', 'title': 'ZBTB1 (Homo sapiens)', 'investigated_as': ['DNA repair'], 'uuid': '647206fd-b78f-4e09-9585-b3fc4dd7ecb5', 'schema_version': '14', 'name': 'ZBTB1-human', '@id': '/targets/ZBTB1-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF794JUL/, /files/ENCFF674OUR/ 6557276739 ENCODE Processing Pipeline 2ba6ceff760a38ac792bebf675739585 https://www.encodeproject.org/files/ENCFF652MZE/@@download/ENCFF652MZE.bam released s3://encode-public/2020/06/02/bf234413-c375-4c89-853e-9e70ecce16cf/ENCFF652MZE.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF091IYB fastq fastq reads ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF445KUN/ 2152805710 Michael Snyder, Stanford 669b0307c5118c56c8cfd52f4224f9e2 SRA:SRR6213156 https://www.encodeproject.org/files/ENCFF091IYB/@@download/ENCFF091IYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/08/c03a6a80-3c45-44c2-991c-0327c4a60b7d/ENCFF091IYB.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF445KUN fastq fastq reads ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF091IYB/ 1839886938 Michael Snyder, Stanford 00e3e6ff730fca684fd4e9a0a0b5e1f1 SRA:SRR6213156 https://www.encodeproject.org/files/ENCFF445KUN/@@download/ENCFF445KUN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/08/b407bb58-3cd4-4bc6-af30-2d7496ff42e4/ENCFF445KUN.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF882UWP bam bam unfiltered alignments hg19 ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 101 /files/ENCFF091IYB/, /files/ENCFF445KUN/, /files/ENCFF807MUK/ 3826361977 ENCODE Processing Pipeline ba4dbc13d5787b8666807c5178eaecb4 https://www.encodeproject.org/files/ENCFF882UWP/@@download/ENCFF882UWP.bam released s3://encode-public/2017/02/09/81ddd41e-6c1f-41e9-ad2e-90d4d917561f/ENCFF882UWP.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF189AOD bam bam unfiltered alignments GRCh38 ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 101 /files/ENCFF091IYB/, /files/ENCFF445KUN/, /files/ENCFF643CGH/ 3831698715 ENCODE Processing Pipeline d3f160899ed2e69e27bdb045206df025 https://www.encodeproject.org/files/ENCFF189AOD/@@download/ENCFF189AOD.bam released s3://encode-public/2017/02/09/1260a1db-dcaa-4269-a904-e07085db9e0e/ENCFF189AOD.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF129IXY bam bam alignments hg19 ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 101 /files/ENCFF091IYB/, /files/ENCFF445KUN/, /files/ENCFF807MUK/ 2775438042 ENCODE Processing Pipeline 0657ba55e7403854d62fab26223a8760 https://www.encodeproject.org/files/ENCFF129IXY/@@download/ENCFF129IXY.bam released s3://encode-public/2017/02/09/60efb249-c593-4c6d-a7f0-b875284b31d0/ENCFF129IXY.bam ENCODE3 hg19 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF230BZG bam bam alignments GRCh38 ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 101 /files/ENCFF091IYB/, /files/ENCFF445KUN/, /files/ENCFF643CGH/ 2777838431 ENCODE Processing Pipeline 0a131c205303f7572aad7bd2a2c2aacd https://www.encodeproject.org/files/ENCFF230BZG/@@download/ENCFF230BZG.bam released s3://encode-public/2017/02/09/dc088fc5-d1a1-4a94-bbf9-51a0b4cfe025/ENCFF230BZG.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF301KKE bam bam unfiltered alignments GRCh38 ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF445KUN/, /files/ENCFF091IYB/ 3831025010 ENCODE Processing Pipeline 5ebab211ffc3bbc252d9981e44304a8c https://www.encodeproject.org/files/ENCFF301KKE/@@download/ENCFF301KKE.bam released s3://encode-public/2020/10/28/e1c752de-ec1c-494d-809b-a861d0775633/ENCFF301KKE.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF612SFC bam bam alignments GRCh38 ENCSR068GPE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} hg19 19 32691021 32891354 DNA 2017-02-13 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF445KUN/, /files/ENCFF091IYB/ 2723251828 ENCODE Processing Pipeline 1461ed409bb5d8605323d32565af0cf4 https://www.encodeproject.org/files/ENCFF612SFC/@@download/ENCFF612SFC.bam released s3://encode-public/2020/10/28/eee767a3-5f40-4329-93fb-27d87c791760/ENCFF612SFC.bam ENCODE4 v1.5.1 GRCh38 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF349HKB fastq fastq reads ENCSR610FIQ Control ChIP-seq /fly-donors/ENCDO561RTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41961/'], '@type': ['Target', 'Item'], 'name': 'Fer2-dmelanogaster', 'label': 'Fer2', '@id': '/targets/Fer2-dmelanogaster/', 'title': 'Fer2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f23a0d76-0460-4979-9ea3-07b9ba0f4ddf', 'status': 'released'} dm3 3R 11961853 11981187 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1893756710 Kevin White, UChicago 7d31a79207bd1e409e8914c7c3e7f06b https://www.encodeproject.org/files/ENCFF349HKB/@@download/ENCFF349HKB.fastq.gz Illumina HiSeq 4000 /files/ENCFF645EXP/ released s3://encode-public/2018/09/18/258e2261-edbb-4c7c-9ffa-82b93a3cbcd5/ENCFF349HKB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF163SXV bam bam alignments dm6 ENCSR610FIQ Control ChIP-seq /fly-donors/ENCDO561RTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41961/'], '@type': ['Target', 'Item'], 'name': 'Fer2-dmelanogaster', 'label': 'Fer2', '@id': '/targets/Fer2-dmelanogaster/', 'title': 'Fer2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f23a0d76-0460-4979-9ea3-07b9ba0f4ddf', 'status': 'released'} dm3 3R 11961853 11981187 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF349HKB/, /files/ENCFF479RCH/ 2581553315 Kevin White, UChicago b8b9b5208498bdb48a2695a67fe0e2bb https://www.encodeproject.org/files/ENCFF163SXV/@@download/ENCFF163SXV.bam released s3://encode-public/2018/09/19/c97f9ece-9d03-4fe1-b480-a3d911ac90d2/ENCFF163SXV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF069BKK bigWig bigWig signal of unique reads dm6 ENCSR610FIQ Control ChIP-seq /fly-donors/ENCDO561RTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41961/'], '@type': ['Target', 'Item'], 'name': 'Fer2-dmelanogaster', 'label': 'Fer2', '@id': '/targets/Fer2-dmelanogaster/', 'title': 'Fer2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f23a0d76-0460-4979-9ea3-07b9ba0f4ddf', 'status': 'released'} dm3 3R 11961853 11981187 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF163SXV/ 17850694 Kevin White, UChicago 3999353926212f0255840f82dbf72df7 https://www.encodeproject.org/files/ENCFF069BKK/@@download/ENCFF069BKK.bigWig released s3://encode-public/2018/09/19/a1bce2f4-2e66-4fd0-96a6-61aec2f2623c/ENCFF069BKK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF288TWU bigWig bigWig read-depth normalized signal dm6 ENCSR610FIQ Control ChIP-seq /fly-donors/ENCDO561RTQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41961/'], '@type': ['Target', 'Item'], 'name': 'Fer2-dmelanogaster', 'label': 'Fer2', '@id': '/targets/Fer2-dmelanogaster/', 'title': 'Fer2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f23a0d76-0460-4979-9ea3-07b9ba0f4ddf', 'status': 'released'} dm3 3R 11961853 11981187 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF163SXV/ 17932538 Kevin White, UChicago c1f377dc847d30329c21f57773d72af2 https://www.encodeproject.org/files/ENCFF288TWU/@@download/ENCFF288TWU.bigWig released s3://encode-public/2018/09/19/d29cbfbb-df31-466a-9c5d-7f32e63fcfa2/ENCFF288TWU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF643OCI fastq fastq reads ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF010LOC/ 2733819139 Michael Snyder, Stanford f5622161ee6771d68dcace4e935b0fb7 SRA:SRR5111153 https://www.encodeproject.org/files/ENCFF643OCI/@@download/ENCFF643OCI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/bcc4dfea-36e6-4afc-8c86-d1f07972fb44/ENCFF643OCI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF010LOC fastq fastq reads ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF643OCI/ 2786896908 Michael Snyder, Stanford 4eb4f608591eea7a20e5d86f48177077 SRA:SRR5111153 https://www.encodeproject.org/files/ENCFF010LOC/@@download/ENCFF010LOC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/999be462-3f55-4edb-8329-a2b5b90f5017/ENCFF010LOC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF528VJN bam bam unfiltered alignments GRCh38 ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF643OCI/, /files/ENCFF010LOC/ 5593898463 ENCODE Processing Pipeline cbc842ebb86d1bb5bdca2a05aaddec1f https://www.encodeproject.org/files/ENCFF528VJN/@@download/ENCFF528VJN.bam released s3://encode-public/2016/08/13/db08a3bf-6378-42a2-aba5-bb0189c14cbf/ENCFF528VJN.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF541HQC bam bam alignments GRCh38 ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF643OCI/, /files/ENCFF010LOC/ 4717908942 ENCODE Processing Pipeline a28b5a58b22da1bb5bac96c24cef5761 https://www.encodeproject.org/files/ENCFF541HQC/@@download/ENCFF541HQC.bam released s3://encode-public/2016/08/13/58f0c152-0359-4a2c-badc-c4c8752f27d9/ENCFF541HQC.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF088LDV bam bam unfiltered alignments hg19 ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF643OCI/, /files/ENCFF010LOC/ 5586285515 ENCODE Processing Pipeline 5b610584dae066a041e8ec72d56190f8 https://www.encodeproject.org/files/ENCFF088LDV/@@download/ENCFF088LDV.bam released s3://encode-public/2016/09/11/9574e4d3-5dff-4dda-803d-cb4aff2cbf8c/ENCFF088LDV.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF226DUR bam bam alignments hg19 ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF643OCI/, /files/ENCFF010LOC/ 4715146086 ENCODE Processing Pipeline 06c2b474ca21b3bd52742f1e9f00c13b https://www.encodeproject.org/files/ENCFF226DUR/@@download/ENCFF226DUR.bam released s3://encode-public/2016/09/11/8a279ee0-3bde-4654-aff7-08b2667893ae/ENCFF226DUR.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF142NDQ bam bam unfiltered alignments GRCh38 ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF643OCI/, /files/ENCFF010LOC/ 5660796301 ENCODE Processing Pipeline 7e2aa7e9d1ff71d7f7e90c9f8968ede4 https://www.encodeproject.org/files/ENCFF142NDQ/@@download/ENCFF142NDQ.bam released s3://encode-public/2020/06/02/cf4faae2-547f-46a7-89cc-c11205929d66/ENCFF142NDQ.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF905YEA bam bam alignments GRCh38 ENCSR123TVS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/643836/'], '@type': ['Target', 'Item'], 'name': 'ZFP62-human', 'label': 'ZFP62', '@id': '/targets/ZFP62-human/', 'title': 'ZFP62 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '94e34eb0-953c-4d69-9c69-e1d304c835bd', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF643OCI/, /files/ENCFF010LOC/ 4793268235 ENCODE Processing Pipeline 44ca3c675441f65d7de5b1772e3d34da https://www.encodeproject.org/files/ENCFF905YEA/@@download/ENCFF905YEA.bam released s3://encode-public/2020/06/02/f3d1eb1c-711a-43a6-aa35-ea8c6de2878d/ENCFF905YEA.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF231JUU fastq fastq reads ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF432BFB/ 2286622741 Michael Snyder, Stanford b7f83d251a7ed0dcd07be97de3661881 SRA:SRR6212699 https://www.encodeproject.org/files/ENCFF231JUU/@@download/ENCFF231JUU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/14de8d55-be3a-470d-8795-cbd497870e02/ENCFF231JUU.fastq.gz ENCFF432BFB fastq fastq reads ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF231JUU/ 2270186703 Michael Snyder, Stanford ed9be8be51448b4bf6858f990d034116 SRA:SRR6212699 https://www.encodeproject.org/files/ENCFF432BFB/@@download/ENCFF432BFB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/0c76275e-4c5c-45ea-b9aa-b2a35e0d2115/ENCFF432BFB.fastq.gz ENCFF280ABH bam bam unfiltered alignments GRCh38 ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF432BFB/, /files/ENCFF231JUU/ 4975432466 ENCODE Processing Pipeline 1ad1208513e41433f348dfc1d59f8d50 https://www.encodeproject.org/files/ENCFF280ABH/@@download/ENCFF280ABH.bam released s3://encode-public/2016/05/06/31ac97e5-27af-4bdb-972d-e75f7041e24c/ENCFF280ABH.bam ENCODE3 GRCh38 archived ENCFF502XEU bam bam alignments GRCh38 ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF432BFB/, /files/ENCFF231JUU/ 4028202591 ENCODE Processing Pipeline d729edc8049623f91fd45de377f0017d https://www.encodeproject.org/files/ENCFF502XEU/@@download/ENCFF502XEU.bam released s3://encode-public/2016/05/06/eff8489a-6b27-46b7-b72e-f9580e0e64ed/ENCFF502XEU.bam ENCODE3 GRCh38 archived ENCFF861QOR bam bam unfiltered alignments hg19 ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF432BFB/, /files/ENCFF231JUU/ 4970518853 ENCODE Processing Pipeline 22e4b62ff46fa7a6da80cffcbe88919b https://www.encodeproject.org/files/ENCFF861QOR/@@download/ENCFF861QOR.bam released s3://encode-public/2016/12/06/328a8613-1cd3-4bc9-bc58-9a3ce0fd6c1f/ENCFF861QOR.bam ENCODE3 hg19 archived ENCFF238ZIF bam bam alignments hg19 ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF432BFB/, /files/ENCFF231JUU/ 4021993809 ENCODE Processing Pipeline e269d61141793f4c193f4b905180b108 https://www.encodeproject.org/files/ENCFF238ZIF/@@download/ENCFF238ZIF.bam released s3://encode-public/2016/12/06/1ce6f3e4-7169-4946-962f-a0725a55e2de/ENCFF238ZIF.bam ENCODE3 hg19 archived ENCFF006RGU bam bam unfiltered alignments GRCh38 ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF432BFB/, /files/ENCFF231JUU/ 4957494374 ENCODE Processing Pipeline f49434e08ab15ecddb878d5f42b318bf https://www.encodeproject.org/files/ENCFF006RGU/@@download/ENCFF006RGU.bam released s3://encode-public/2020/06/03/83c47344-42db-4a4a-9faa-07651533fd06/ENCFF006RGU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF613STK bam bam alignments GRCh38 ENCSR211EXK Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF432BFB/, /files/ENCFF231JUU/ 3940746648 ENCODE Processing Pipeline 9ad73c71341e669feb607c9d7c21fd3c https://www.encodeproject.org/files/ENCFF613STK/@@download/ENCFF613STK.bam released s3://encode-public/2020/06/03/286f0186-429d-4e99-a68a-a3790da7ae24/ENCFF613STK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF228AVN fastq fastq reads ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1149955061 Bradley Bernstein, Broad 6d1c2239bba5ea6850b65bbb41ce219f SRA:SRR5339056 https://www.encodeproject.org/files/ENCFF228AVN/@@download/ENCFF228AVN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/cb4dc0b6-0fdd-4a15-be31-8e2f48c7828b/ENCFF228AVN.fastq.gz ENCFF145VOM fastq fastq reads ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1117247781 Bradley Bernstein, Broad 9ea1d2740914ee95acdd43edc7c98c00 SRA:SRR5339057 https://www.encodeproject.org/files/ENCFF145VOM/@@download/ENCFF145VOM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/20/af907675-db06-431f-a385-082c74a3d7ce/ENCFF145VOM.fastq.gz ENCFF142HVK fastq fastq reads ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1017780669 Bradley Bernstein, Broad 68efa2e73e2ff2179da700dec8d1fcb4 SRA:SRR5339058 https://www.encodeproject.org/files/ENCFF142HVK/@@download/ENCFF142HVK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/0304c4b1-0274-4610-bc36-bc9866d57f4c/ENCFF142HVK.fastq.gz ENCFF067KOA fastq fastq reads ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 single-ended 1125759195 Bradley Bernstein, Broad 8b4173e90810991dcd826cfdc51601ec SRA:SRR5339059 https://www.encodeproject.org/files/ENCFF067KOA/@@download/ENCFF067KOA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/22/2d3e070f-7319-46e5-bd21-f4d391bf4e8c/ENCFF067KOA.fastq.gz ENCFF370DUA bam bam unfiltered alignments hg19 ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF228AVN/, /files/ENCFF142HVK/, /files/ENCFF145VOM/, /files/ENCFF067KOA/ 4246278426 ENCODE Processing Pipeline 0f090f20e58d55b70cacaf04cc256a97 https://www.encodeproject.org/files/ENCFF370DUA/@@download/ENCFF370DUA.bam released s3://encode-public/2016/10/27/7e6eec08-2c14-4e7f-92cd-f75bf61e5f31/ENCFF370DUA.bam ENCODE3 hg19 archived ENCFF011DCG bam bam unfiltered alignments GRCh38 ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF228AVN/, /files/ENCFF142HVK/, /files/ENCFF145VOM/, /files/ENCFF643CGH/, /files/ENCFF067KOA/ 4259386420 ENCODE Processing Pipeline 698ec5defb2a808851a4e78dce04ef3b https://www.encodeproject.org/files/ENCFF011DCG/@@download/ENCFF011DCG.bam released s3://encode-public/2016/10/27/c3385c15-1540-4ee0-a489-a7c0e455dfd7/ENCFF011DCG.bam ENCODE3 GRCh38 archived ENCFF305KDB bam bam alignments GRCh38 ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF228AVN/, /files/ENCFF142HVK/, /files/ENCFF145VOM/, /files/ENCFF643CGH/, /files/ENCFF067KOA/ 3559370266 ENCODE Processing Pipeline 9d2331e32dd5de0fcd65add8dd51862e 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/files/ENCFF142HVK/, /files/ENCFF228AVN/, /files/ENCFF145VOM/, /files/ENCFF110MCL/ 4317744697 ENCODE Processing Pipeline 356fe2e39d6efad47671cfc98fb4b42e https://www.encodeproject.org/files/ENCFF435YWL/@@download/ENCFF435YWL.bam released s3://encode-public/2020/08/20/b0b78527-0817-4bba-9322-e7e10d26384a/ENCFF435YWL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF776PWW bam bam alignments GRCh38 ENCSR652EPR Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2016-11-03 ENCODE 200-600 1 1_1 76 /files/ENCFF067KOA/, /files/ENCFF142HVK/, /files/ENCFF228AVN/, /files/ENCFF145VOM/, /files/ENCFF110MCL/ 3637804102 ENCODE Processing Pipeline 56c045e07441abc36135a42c5e7c8f59 https://www.encodeproject.org/files/ENCFF776PWW/@@download/ENCFF776PWW.bam released s3://encode-public/2020/08/20/ff707627-5a65-40a5-9886-2cefaf708732/ENCFF776PWW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF584LXI fastq fastq reads ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 1 1_1 36 single-ended 1354535056 Michael Snyder, Stanford 135f04b527b7e7375049e98a2a7a6e5e SRA:SRR5112323 https://www.encodeproject.org/files/ENCFF584LXI/@@download/ENCFF584LXI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/07/28/d5ddad1c-272d-478f-89ab-a786c8eacbcd/ENCFF584LXI.fastq.gz low read length ENCFF492DKQ fastq fastq reads ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 2 2_1 36 single-ended 1409117138 Michael Snyder, Stanford fa28e96905e5495e42a07b224cbbaf55 SRA:SRR5112324 https://www.encodeproject.org/files/ENCFF492DKQ/@@download/ENCFF492DKQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/07/28/76e34926-8df7-4bbd-aa98-fb282cf6c826/ENCFF492DKQ.fastq.gz low read length ENCFF433SPB bam bam unfiltered alignments GRCh38 ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 2 2_1 36 /files/ENCFF492DKQ/, /files/ENCFF643CGH/ 1936194477 ENCODE Processing Pipeline 47957cedf33edf8c51f11c7e593238c0 https://www.encodeproject.org/files/ENCFF433SPB/@@download/ENCFF433SPB.bam released s3://encode-public/2016/08/30/294f7fde-5e28-47ec-ae0d-2f6a75a94552/ENCFF433SPB.bam ENCODE3 GRCh38 archived low read length ENCFF352RKQ bam bam unfiltered alignments GRCh38 ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 1 1_1 36 /files/ENCFF584LXI/, /files/ENCFF643CGH/ 1876121928 ENCODE Processing Pipeline ef16fbfda5f14b5e4deea0fbf4a1d4a0 https://www.encodeproject.org/files/ENCFF352RKQ/@@download/ENCFF352RKQ.bam released s3://encode-public/2016/08/30/13419ec6-5240-4778-8403-7fd949039583/ENCFF352RKQ.bam ENCODE3 GRCh38 archived low read length ENCFF061KEN bam bam unfiltered alignments hg19 ENCSR970FKL Control 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/human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 1 1_1 36 /files/ENCFF584LXI/, /files/ENCFF807MUK/ 1374509055 ENCODE Processing Pipeline e05642f7d0cacc1d4c4c57b4c2520dbc https://www.encodeproject.org/files/ENCFF880YHS/@@download/ENCFF880YHS.bam released s3://encode-public/2016/08/30/747f8c1f-599f-4a12-b3d3-0e13399bc547/ENCFF880YHS.bam ENCODE3 hg19 archived low read length ENCFF485QJI bam bam alignments hg19 ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 2 2_1 36 /files/ENCFF492DKQ/, /files/ENCFF807MUK/ 1434103305 ENCODE Processing Pipeline f113d362a4404e16f03ebdef95560ce0 https://www.encodeproject.org/files/ENCFF485QJI/@@download/ENCFF485QJI.bam released s3://encode-public/2016/08/30/d383dfea-9f68-49c0-94e3-e0bdb6041ddd/ENCFF485QJI.bam ENCODE3 hg19 archived low read length ENCFF561VUD bam bam alignments GRCh38 ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF492DKQ/ 1532168608 ENCODE Processing Pipeline 50f6ae21514f7d80b6780d17a40f93c9 https://www.encodeproject.org/files/ENCFF561VUD/@@download/ENCFF561VUD.bam released s3://encode-public/2020/06/03/c6373e40-817f-436f-9c7c-8211e5a2aaec/ENCFF561VUD.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF560ZAM bam bam unfiltered alignments GRCh38 ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF584LXI/ 1826903720 ENCODE Processing Pipeline dc571662efd6c4bfccf575226d061198 https://www.encodeproject.org/files/ENCFF560ZAM/@@download/ENCFF560ZAM.bam released s3://encode-public/2020/06/03/60f16a9a-9724-47bd-b9e7-687cbfe4f394/ENCFF560ZAM.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF793CDU bam bam alignments GRCh38 ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF584LXI/ 1475528093 ENCODE Processing Pipeline a8b72bc21b560f7d4489291019e29390 https://www.encodeproject.org/files/ENCFF793CDU/@@download/ENCFF793CDU.bam released s3://encode-public/2020/06/03/a0e9b03c-985a-447e-91e3-6733acf86d2e/ENCFF793CDU.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF435DMG bam bam unfiltered alignments GRCh38 ENCSR970FKL Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2016-08-31 ENCODE 150-350 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF492DKQ/ 1887191570 ENCODE Processing Pipeline 357a866d6a911c8633555d4e33457c98 https://www.encodeproject.org/files/ENCFF435DMG/@@download/ENCFF435DMG.bam released s3://encode-public/2020/06/03/021f6093-0ea6-47a5-b131-38b248ad35f3/ENCFF435DMG.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF737COF bam bam unfiltered alignments hg19 ENCSR237LVA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF272WBE/, /files/ENCFF807MUK/ 2370174372 ENCODE Processing Pipeline 369e7e0954dba02bfd727a4d2222e414 https://www.encodeproject.org/files/ENCFF737COF/@@download/ENCFF737COF.bam released s3://encode-public/2018/02/22/cca0356b-7dde-4174-938f-20d35672974e/ENCFF737COF.bam ENCODE3 hg19 archived ENCFF272WBE fastq fastq reads ENCSR237LVA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 1 1_1 50 single-ended 2205997678 Richard Myers, HAIB 07eecd7b51d4222dd6d9692720070dc4 SRA:SRR5331458 https://www.encodeproject.org/files/ENCFF272WBE/@@download/ENCFF272WBE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/03/31/a0b18758-58dd-44d6-a7e4-8cf21ac4dc24/ENCFF272WBE.fastq.gz ENCFF953KXC bam bam unfiltered alignments GRCh38 ENCSR237LVA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF272WBE/, /files/ENCFF643CGH/ 2379214775 ENCODE Processing Pipeline 9eb36e3e4e6b95cb9012f28b28c8d677 https://www.encodeproject.org/files/ENCFF953KXC/@@download/ENCFF953KXC.bam released s3://encode-public/2016/05/06/f49a6928-22f4-424b-9a20-2508c2323f37/ENCFF953KXC.bam ENCODE3 GRCh38 archived ENCFF626VZO bam bam alignments GRCh38 ENCSR237LVA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF272WBE/, /files/ENCFF643CGH/ 1811515067 ENCODE Processing Pipeline 744c3f6ba92217c80cc9e88e2d40554a https://www.encodeproject.org/files/ENCFF626VZO/@@download/ENCFF626VZO.bam released s3://encode-public/2016/05/06/31b47cfc-3bca-45ad-88b4-ece3773a6ab0/ENCFF626VZO.bam ENCODE3 GRCh38 archived ENCFF108FPL bam bam alignments hg19 ENCSR237LVA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF272WBE/, /files/ENCFF807MUK/ 1811261168 ENCODE Processing Pipeline 61b7135fac9064b4eff6c23e810f7cb4 https://www.encodeproject.org/files/ENCFF108FPL/@@download/ENCFF108FPL.bam released s3://encode-public/2016/05/07/03a84d0f-52dc-4f1d-8b21-e95a8be6660b/ENCFF108FPL.bam ENCODE3 hg19 archived ENCFF582FHZ bam bam unfiltered alignments GRCh38 ENCSR237LVA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF272WBE/ 2358364904 ENCODE Processing Pipeline ffd9e896fda927ae3fc6d3819b60467a https://www.encodeproject.org/files/ENCFF582FHZ/@@download/ENCFF582FHZ.bam released s3://encode-public/2020/06/25/ff44d173-049e-4267-9fc2-8b2515ebfee5/ENCFF582FHZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF648KAE bam bam alignments GRCh38 ENCSR237LVA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-06-13 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF272WBE/ 1895779738 ENCODE Processing Pipeline 33c45b4ceef0de5facfd082b1dd49aef https://www.encodeproject.org/files/ENCFF648KAE/@@download/ENCFF648KAE.bam released s3://encode-public/2020/06/25/ea755439-0e80-48d0-b2fc-291e8a14a24c/ENCFF648KAE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF559NVC fastq fastq reads ENCSR129EXW Control ChIP-seq /fly-donors/ENCDO579APG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42433/'], '@type': ['Target', 'Item'], 'name': 'TFAM-dmelanogaster', 'label': 'TFAM', '@id': '/targets/TFAM-dmelanogaster/', 'title': 'TFAM (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '52f4e04b-4789-4b92-8fb5-1656c66d8087', 'status': 'released'} dm3 3R 16388972 16410962 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 350820064 Kevin White, UChicago 48d9b08ed99dc9a8baa6981bf00b9666 https://www.encodeproject.org/files/ENCFF559NVC/@@download/ENCFF559NVC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/12/20/86988364-d412-4a35-879e-718d1268cd1c/ENCFF559NVC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF199XGH bam bam alignments dm3 ENCSR129EXW Control ChIP-seq /fly-donors/ENCDO579APG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42433/'], '@type': ['Target', 'Item'], 'name': 'TFAM-dmelanogaster', 'label': 'TFAM', '@id': '/targets/TFAM-dmelanogaster/', 'title': 'TFAM (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '52f4e04b-4789-4b92-8fb5-1656c66d8087', 'status': 'released'} dm3 3R 16388972 16410962 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF559NVC/, /files/ENCFF059UHX/ 426467911 Kevin White, UChicago 36e058bdb526a8234fa12e136905db9f https://www.encodeproject.org/files/ENCFF199XGH/@@download/ENCFF199XGH.bam released s3://encode-public/2016/12/23/bb9b810d-53b0-44d0-ab55-2381ca27bca0/ENCFF199XGH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF679KWR bam bam alignments dm6 ENCSR129EXW Control ChIP-seq /fly-donors/ENCDO579APG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42433/'], '@type': ['Target', 'Item'], 'name': 'TFAM-dmelanogaster', 'label': 'TFAM', '@id': '/targets/TFAM-dmelanogaster/', 'title': 'TFAM (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '52f4e04b-4789-4b92-8fb5-1656c66d8087', 'status': 'released'} dm3 3R 16388972 16410962 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF559NVC/, /files/ENCFF479RCH/ 423155775 Kevin White, UChicago c8ce2698a72e62cfdb51b13865224752 https://www.encodeproject.org/files/ENCFF679KWR/@@download/ENCFF679KWR.bam released s3://encode-public/2016/12/23/2d90ea20-c818-4863-907e-56daa3e3f6e2/ENCFF679KWR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF327RPO bigWig bigWig signal of unique reads dm3 ENCSR129EXW Control ChIP-seq /fly-donors/ENCDO579APG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42433/'], '@type': ['Target', 'Item'], 'name': 'TFAM-dmelanogaster', 'label': 'TFAM', '@id': '/targets/TFAM-dmelanogaster/', 'title': 'TFAM (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '52f4e04b-4789-4b92-8fb5-1656c66d8087', 'status': 'released'} dm3 3R 16388972 16410962 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF199XGH/ 15142055 Kevin White, UChicago 8545dbd7f8b829cbfd3347570020f6ac https://www.encodeproject.org/files/ENCFF327RPO/@@download/ENCFF327RPO.bigWig released s3://encode-public/2017/01/03/f52bb878-c2cf-4c4e-a58c-a1793d510498/ENCFF327RPO.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF100TKS bigWig bigWig read-depth normalized signal dm3 ENCSR129EXW Control ChIP-seq /fly-donors/ENCDO579APG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42433/'], '@type': ['Target', 'Item'], 'name': 'TFAM-dmelanogaster', 'label': 'TFAM', '@id': '/targets/TFAM-dmelanogaster/', 'title': 'TFAM (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '52f4e04b-4789-4b92-8fb5-1656c66d8087', 'status': 'released'} dm3 3R 16388972 16410962 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF199XGH/ 15117233 Kevin White, UChicago 5349579eb05986a2aba39fa6bb1c7ec0 https://www.encodeproject.org/files/ENCFF100TKS/@@download/ENCFF100TKS.bigWig released s3://encode-public/2017/01/03/cec2cad8-9075-4657-ad35-4a1e98418a70/ENCFF100TKS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF737PQZ bigWig bigWig read-depth normalized signal dm6 ENCSR129EXW Control ChIP-seq /fly-donors/ENCDO579APG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42433/'], '@type': ['Target', 'Item'], 'name': 'TFAM-dmelanogaster', 'label': 'TFAM', '@id': '/targets/TFAM-dmelanogaster/', 'title': 'TFAM (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '52f4e04b-4789-4b92-8fb5-1656c66d8087', 'status': 'released'} dm3 3R 16388972 16410962 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679KWR/ 17197035 Kevin White, UChicago e7767427e326dd972cc0a2880d415baf https://www.encodeproject.org/files/ENCFF737PQZ/@@download/ENCFF737PQZ.bigWig released s3://encode-public/2017/01/04/fcdaeca6-32a9-4a51-9078-752bbc135047/ENCFF737PQZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF313RCF bigWig bigWig signal of unique reads dm6 ENCSR129EXW Control ChIP-seq /fly-donors/ENCDO579APG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42433/'], '@type': ['Target', 'Item'], 'name': 'TFAM-dmelanogaster', 'label': 'TFAM', '@id': '/targets/TFAM-dmelanogaster/', 'title': 'TFAM (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '52f4e04b-4789-4b92-8fb5-1656c66d8087', 'status': 'released'} dm3 3R 16388972 16410962 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679KWR/ 17234442 Kevin White, UChicago 1549fbb72fcf865331a57073cbe933ed https://www.encodeproject.org/files/ENCFF313RCF/@@download/ENCFF313RCF.bigWig released s3://encode-public/2017/01/04/68de2abb-62fb-4c06-8ecd-11e698926f87/ENCFF313RCF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF871RZY fastq fastq reads ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF892NGP/ 2438595816 Michael Snyder, Stanford 84ca5dd3b687519c33ff09d1922261a7 SRA:SRR6213601 https://www.encodeproject.org/files/ENCFF871RZY/@@download/ENCFF871RZY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/a814eb7d-7a68-462b-ba86-584d957362a9/ENCFF871RZY.fastq.gz ENCFF892NGP fastq fastq reads ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF871RZY/ 2503166528 Michael Snyder, Stanford 2c2871a1270142df772d7e9ff1af400d SRA:SRR6213601 https://www.encodeproject.org/files/ENCFF892NGP/@@download/ENCFF892NGP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/24/fca71333-a839-442d-8dba-15c748ee9dba/ENCFF892NGP.fastq.gz ENCFF137TDM bam bam unfiltered alignments GRCh38 ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF871RZY/, /files/ENCFF892NGP/ 5458635893 ENCODE Processing Pipeline fc2dd61ebe3d87ff6266dddf5d519844 https://www.encodeproject.org/files/ENCFF137TDM/@@download/ENCFF137TDM.bam released s3://encode-public/2016/05/06/1b1a5551-3f8b-4989-9424-5a17a317490c/ENCFF137TDM.bam ENCODE3 GRCh38 archived ENCFF607RXM bam bam alignments GRCh38 ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF871RZY/, /files/ENCFF892NGP/ 4354106715 ENCODE Processing Pipeline 61630c74aee55cc51ab939cf5d95f2d2 https://www.encodeproject.org/files/ENCFF607RXM/@@download/ENCFF607RXM.bam released s3://encode-public/2016/05/06/d8577440-80bc-4691-af70-a14b9b3e0ed1/ENCFF607RXM.bam ENCODE3 GRCh38 archived ENCFF621UAE bam bam unfiltered alignments hg19 ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF871RZY/, /files/ENCFF892NGP/ 5452488796 ENCODE Processing Pipeline d2cc0a870eb6412a5e18a9fcd76142fe https://www.encodeproject.org/files/ENCFF621UAE/@@download/ENCFF621UAE.bam released s3://encode-public/2016/12/06/d88fdcf0-741d-469d-b395-0a225f8eee36/ENCFF621UAE.bam ENCODE3 hg19 archived ENCFF872MDZ bam bam alignments hg19 ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF871RZY/, /files/ENCFF892NGP/ 4344138591 ENCODE Processing Pipeline 4b65d7f21e13c06dfb9a8092c95e0a87 https://www.encodeproject.org/files/ENCFF872MDZ/@@download/ENCFF872MDZ.bam released s3://encode-public/2016/12/06/67aa54f6-f206-45a3-89e9-bb503918c752/ENCFF872MDZ.bam ENCODE3 hg19 archived ENCFF052PRA bam bam unfiltered alignments GRCh38 ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF871RZY/, /files/ENCFF892NGP/ 5435349430 ENCODE Processing Pipeline 17868b6a401d5cedb6843fa40ec45ba6 https://www.encodeproject.org/files/ENCFF052PRA/@@download/ENCFF052PRA.bam released s3://encode-public/2020/06/02/e19d9f0f-0b8b-42fd-9ee9-d6c3fe9528d3/ENCFF052PRA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF978SPZ bam bam alignments GRCh38 ENCSR394BOP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0000945 stomach tissue Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF871RZY/, /files/ENCFF892NGP/ 4303972371 ENCODE Processing Pipeline c2262d3c634394cf1c5aa66d2ee15e1b https://www.encodeproject.org/files/ENCFF978SPZ/@@download/ENCFF978SPZ.bam released s3://encode-public/2020/06/02/5624a758-ee0b-4f8f-9e8c-da98c8b7ea71/ENCFF978SPZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF049LZO fastq fastq reads ENCSR336MGM Control ChIP-seq /fly-donors/ENCDO182CYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36645/'], '@type': ['Target', 'Item'], 'name': 'BEAF-32-dmelanogaster', 'label': 'BEAF-32', '@id': '/targets/BEAF-32-dmelanogaster/', 'title': 'BEAF-32 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'a3defb0c-11f2-4f53-bafb-781775cde14c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 2179946474 Kevin White, UChicago e92c8e60617b1a58a2aa8cd0c7989c48 https://www.encodeproject.org/files/ENCFF049LZO/@@download/ENCFF049LZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/59e7fbca-6dc9-471d-83fb-b564ede01447/ENCFF049LZO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF989UGU bam bam alignments dm3 ENCSR336MGM Control ChIP-seq /fly-donors/ENCDO182CYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36645/'], '@type': ['Target', 'Item'], 'name': 'BEAF-32-dmelanogaster', 'label': 'BEAF-32', '@id': '/targets/BEAF-32-dmelanogaster/', 'title': 'BEAF-32 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'a3defb0c-11f2-4f53-bafb-781775cde14c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF049LZO/ 2981693799 Kevin White, UChicago e4df6da3df5137606e24b6771786fbee https://www.encodeproject.org/files/ENCFF989UGU/@@download/ENCFF989UGU.bam released s3://encode-public/2017/09/13/fe0a3197-aacf-4d05-abeb-b3328d08457e/ENCFF989UGU.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF333TXY bam bam alignments dm6 ENCSR336MGM Control ChIP-seq /fly-donors/ENCDO182CYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36645/'], '@type': ['Target', 'Item'], 'name': 'BEAF-32-dmelanogaster', 'label': 'BEAF-32', '@id': '/targets/BEAF-32-dmelanogaster/', 'title': 'BEAF-32 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'a3defb0c-11f2-4f53-bafb-781775cde14c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF049LZO/ 2958052788 Kevin White, UChicago 3498e045d8abf1c09146b15115414312 https://www.encodeproject.org/files/ENCFF333TXY/@@download/ENCFF333TXY.bam released s3://encode-public/2017/09/13/2450d8f4-90a5-4fee-a7d5-cd1804334180/ENCFF333TXY.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF236TPH bigWig bigWig signal of unique reads dm3 ENCSR336MGM Control ChIP-seq /fly-donors/ENCDO182CYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36645/'], '@type': ['Target', 'Item'], 'name': 'BEAF-32-dmelanogaster', 'label': 'BEAF-32', '@id': '/targets/BEAF-32-dmelanogaster/', 'title': 'BEAF-32 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'a3defb0c-11f2-4f53-bafb-781775cde14c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF989UGU/ 15670038 Kevin White, UChicago 2ad0a23024ed5bcddaae638024185e49 https://www.encodeproject.org/files/ENCFF236TPH/@@download/ENCFF236TPH.bigWig released s3://encode-public/2017/09/14/09beca76-a5ae-4877-9ec2-606095eb9a7e/ENCFF236TPH.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF948ISM bigWig bigWig read-depth normalized signal dm3 ENCSR336MGM Control ChIP-seq /fly-donors/ENCDO182CYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36645/'], '@type': ['Target', 'Item'], 'name': 'BEAF-32-dmelanogaster', 'label': 'BEAF-32', '@id': '/targets/BEAF-32-dmelanogaster/', 'title': 'BEAF-32 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'a3defb0c-11f2-4f53-bafb-781775cde14c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF989UGU/ 15705365 Kevin White, UChicago 7932b090bbb49639ac74916f26acc0d9 https://www.encodeproject.org/files/ENCFF948ISM/@@download/ENCFF948ISM.bigWig released s3://encode-public/2017/09/14/fe7b9530-8372-42d0-9a4d-adf1775303df/ENCFF948ISM.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF276JET bigWig bigWig signal of unique reads dm6 ENCSR336MGM Control ChIP-seq /fly-donors/ENCDO182CYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36645/'], '@type': ['Target', 'Item'], 'name': 'BEAF-32-dmelanogaster', 'label': 'BEAF-32', '@id': '/targets/BEAF-32-dmelanogaster/', 'title': 'BEAF-32 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'a3defb0c-11f2-4f53-bafb-781775cde14c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF333TXY/ 17810480 Kevin White, UChicago 82daaa60cfd0056fb1943881148a5626 https://www.encodeproject.org/files/ENCFF276JET/@@download/ENCFF276JET.bigWig released s3://encode-public/2017/09/14/53f67add-0b63-4403-b554-d7c25f020160/ENCFF276JET.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF820BOS bigWig bigWig read-depth normalized signal dm6 ENCSR336MGM Control ChIP-seq /fly-donors/ENCDO182CYY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36645/'], '@type': ['Target', 'Item'], 'name': 'BEAF-32-dmelanogaster', 'label': 'BEAF-32', '@id': '/targets/BEAF-32-dmelanogaster/', 'title': 'BEAF-32 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'a3defb0c-11f2-4f53-bafb-781775cde14c', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF333TXY/ 17856776 Kevin White, UChicago d096dbebf8a5383bec0d02852b09fcc8 https://www.encodeproject.org/files/ENCFF820BOS/@@download/ENCFF820BOS.bigWig released s3://encode-public/2017/09/14/e0d1a26d-e02c-4473-89f8-ec872a6cf128/ENCFF820BOS.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF769AUI bam bam unfiltered alignments hg19 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF326WHX/, /files/ENCFF430NCQ/ 5188101323 ENCODE Processing Pipeline ab854d321ab13d0ae0a110b956cf9019 https://www.encodeproject.org/files/ENCFF769AUI/@@download/ENCFF769AUI.bam released s3://encode-public/2018/02/21/1113600c-3c05-41ef-ad8e-80c9be980f5d/ENCFF769AUI.bam ENCODE3 hg19 archived ENCFF385XJV bam bam unfiltered alignments hg19 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF075DIL/, /files/ENCFF048XWA/ 5442942656 ENCODE Processing Pipeline 3306296eb1c29da680085a3e6e481ef6 https://www.encodeproject.org/files/ENCFF385XJV/@@download/ENCFF385XJV.bam released s3://encode-public/2018/02/22/d502fd79-5d9e-46e4-a818-d40d32d724a8/ENCFF385XJV.bam ENCODE3 hg19 archived ENCFF075DIL fastq fastq reads ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF048XWA/ 2453382294 Michael Snyder, Stanford fb6962f0ffcf071a4a29c94242c10f9d SRA:SRR8660173 https://www.encodeproject.org/files/ENCFF075DIL/@@download/ENCFF075DIL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/28/aad6c5aa-5c5a-4166-a87c-e41e611ddc8c/ENCFF075DIL.fastq.gz ENCFF430NCQ fastq fastq reads ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF326WHX/ 2333608736 Michael Snyder, Stanford 5891100504460c486deaa9fbff4ac7f1 SRA:SRR8660172 https://www.encodeproject.org/files/ENCFF430NCQ/@@download/ENCFF430NCQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/28/7051780a-feab-4c65-97e7-9c4e85ad02eb/ENCFF430NCQ.fastq.gz ENCFF326WHX fastq fastq reads ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF430NCQ/ 2332206699 Michael Snyder, Stanford 6e53c0116ef74c3b2eab3a4c05a7c12c SRA:SRR8660172 https://www.encodeproject.org/files/ENCFF326WHX/@@download/ENCFF326WHX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/28/6ad198b4-e72b-4cf8-8381-f74bca1c6e62/ENCFF326WHX.fastq.gz ENCFF048XWA fastq fastq reads ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF075DIL/ 2448749255 Michael Snyder, Stanford dba7b00e59fb6c0d70af214be2407a59 SRA:SRR8660173 https://www.encodeproject.org/files/ENCFF048XWA/@@download/ENCFF048XWA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/04/28/0e3fe38c-39b8-4c56-8937-fec097e8ffe5/ENCFF048XWA.fastq.gz ENCFF292OHG bam bam unfiltered alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF075DIL/, /files/ENCFF048XWA/ 5453906371 ENCODE Processing Pipeline 112b2ba8015b983629b2bfcdd579d8bd https://www.encodeproject.org/files/ENCFF292OHG/@@download/ENCFF292OHG.bam released s3://encode-public/2016/05/06/b7380456-1efd-4293-91ef-fb09107deadd/ENCFF292OHG.bam ENCODE3 GRCh38 archived ENCFF307ZRF bam bam unfiltered alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF326WHX/, /files/ENCFF430NCQ/ 5197781190 ENCODE Processing Pipeline 054c6e6c99f6028591db9c6ac27fc74e https://www.encodeproject.org/files/ENCFF307ZRF/@@download/ENCFF307ZRF.bam released s3://encode-public/2016/05/06/982be271-2d1f-4c94-abda-30045b178a62/ENCFF307ZRF.bam ENCODE3 GRCh38 archived ENCFF642XIO bam bam alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF326WHX/, /files/ENCFF430NCQ/ 4365355428 ENCODE Processing Pipeline a3ea8f699cf64bbb76692bb34b14130c https://www.encodeproject.org/files/ENCFF642XIO/@@download/ENCFF642XIO.bam released s3://encode-public/2016/05/06/099e96bd-2c34-4274-adbd-088520198ca6/ENCFF642XIO.bam ENCODE3 GRCh38 archived ENCFF320OXT bam bam alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF075DIL/, /files/ENCFF048XWA/ 4589832500 ENCODE Processing Pipeline 117cb4e32d596cdacfbdb8b46f633208 https://www.encodeproject.org/files/ENCFF320OXT/@@download/ENCFF320OXT.bam released s3://encode-public/2016/05/06/ad358917-1d80-473d-9309-38348ed71699/ENCFF320OXT.bam ENCODE3 GRCh38 archived ENCFF688UTL bam bam alignments hg19 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF326WHX/, /files/ENCFF430NCQ/ 4351417426 ENCODE Processing Pipeline 679019cd9c74d49bdee1453aeea798ac https://www.encodeproject.org/files/ENCFF688UTL/@@download/ENCFF688UTL.bam released s3://encode-public/2016/05/17/f4d3de38-8fd3-4d28-a584-aead77395680/ENCFF688UTL.bam ENCODE3 hg19 archived ENCFF193RMX bam bam alignments hg19 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF075DIL/, /files/ENCFF048XWA/ 4574520218 ENCODE Processing Pipeline 0443b86322efd2c384f53e5cef11b123 https://www.encodeproject.org/files/ENCFF193RMX/@@download/ENCFF193RMX.bam released s3://encode-public/2016/05/17/0de2fa37-d8fd-4d68-82fa-1c4d9c220808/ENCFF193RMX.bam ENCODE3 hg19 archived ENCFF138YIF bam bam alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF326WHX/, /files/ENCFF430NCQ/ 4275149696 ENCODE Processing Pipeline 1e1054214930a7d8acfa6abb92443f91 https://www.encodeproject.org/files/ENCFF138YIF/@@download/ENCFF138YIF.bam released s3://encode-public/2020/06/13/ceafa8d8-50a5-485b-8bd7-d305724ff614/ENCFF138YIF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF037KSL bam bam unfiltered alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF048XWA/, /files/ENCFF075DIL/ 5424708889 ENCODE Processing Pipeline 15c9f0ab8a7cf117f4155dc9ca6a337d https://www.encodeproject.org/files/ENCFF037KSL/@@download/ENCFF037KSL.bam released s3://encode-public/2020/06/13/f1a9d15a-37f6-4b88-9488-6e6bdc3808e6/ENCFF037KSL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF426UUZ bam bam unfiltered alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF326WHX/, /files/ENCFF430NCQ/ 5170526132 ENCODE Processing Pipeline 38e7f1be88428f841c9da7454b2dbb90 https://www.encodeproject.org/files/ENCFF426UUZ/@@download/ENCFF426UUZ.bam released s3://encode-public/2020/06/13/b01ba0e9-9003-47ba-b34c-06d49d5130b0/ENCFF426UUZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF370IWU bam bam alignments GRCh38 ENCSR195ZCD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-05-18 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF048XWA/, /files/ENCFF075DIL/ 4499814843 ENCODE Processing Pipeline ae55aeed87d6a9972de7356d397562cf https://www.encodeproject.org/files/ENCFF370IWU/@@download/ENCFF370IWU.bam released s3://encode-public/2020/06/13/fe5d96c8-107a-4ddc-b677-b0663318bfab/ENCFF370IWU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF143GSR bam bam unfiltered alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF314CVE/, /files/ENCFF110MCL/, /files/ENCFF066XSO/ 6839131683 ENCODE Processing Pipeline 583ce831a6167df0c525559258179306 https://www.encodeproject.org/files/ENCFF143GSR/@@download/ENCFF143GSR.bam released s3://encode-public/2020/09/29/f76c530a-451e-4b45-84cb-0941c1b8410b/ENCFF143GSR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF144AGB fastq fastq reads ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 paired-ended 1 /files/ENCFF699DOM/ 3311452237 Michael Snyder, Stanford 12205cf8fe66fc7df336a89f014cba33 SRA:SRR14637000 https://www.encodeproject.org/files/ENCFF144AGB/@@download/ENCFF144AGB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/4e673442-4537-442e-a1d5-4408ecbbe8eb/ENCFF144AGB.fastq.gz ENCFF699DOM fastq fastq reads ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 paired-ended 2 /files/ENCFF144AGB/ 3513970554 Michael Snyder, Stanford 522b0254a97c18e2878d4f253359919c SRA:SRR14637000 https://www.encodeproject.org/files/ENCFF699DOM/@@download/ENCFF699DOM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/cf2c0b7e-9b80-46f5-8bf6-ba09fa53aa14/ENCFF699DOM.fastq.gz ENCFF314CVE fastq fastq reads ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 paired-ended 1 /files/ENCFF066XSO/ 3405416625 Michael Snyder, Stanford 946aa908c62e8c131f5ae7160c134001 SRA:SRR14637001 https://www.encodeproject.org/files/ENCFF314CVE/@@download/ENCFF314CVE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/b4eb6a2b-0f67-4923-9f68-c6f72ce2f478/ENCFF314CVE.fastq.gz ENCFF066XSO fastq fastq reads ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 paired-ended 2 /files/ENCFF314CVE/ 3630565142 Michael Snyder, Stanford 8cb502cc87651a69a3bca9459dd512e3 SRA:SRR14637001 https://www.encodeproject.org/files/ENCFF066XSO/@@download/ENCFF066XSO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/08594986-72c0-43fb-a334-b379190e30e2/ENCFF066XSO.fastq.gz ENCFF758CRV bam bam alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF699DOM/, /files/ENCFF144AGB/ 5126431861 ENCODE Processing Pipeline 3d27b3879ce756ed69ef813082402ff0 https://www.encodeproject.org/files/ENCFF758CRV/@@download/ENCFF758CRV.bam released s3://encode-public/2017/01/08/f3646c75-01d7-4329-b2e2-c52eaf3476d3/ENCFF758CRV.bam ENCODE3 GRCh38 archived ENCFF575WLE bam bam alignments hg19 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF314CVE/, /files/ENCFF066XSO/ 5395277887 ENCODE Processing Pipeline c66e13907acb94cbb68c4b167fda606a https://www.encodeproject.org/files/ENCFF575WLE/@@download/ENCFF575WLE.bam released s3://encode-public/2017/01/08/8858487c-d840-49f7-a876-cbc6efe18b2d/ENCFF575WLE.bam ENCODE3 hg19 archived ENCFF038GLI bam bam unfiltered alignments hg19 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF314CVE/, /files/ENCFF066XSO/ 6737373625 ENCODE Processing Pipeline 492b65430a808907e16650b7a2cc2a7f https://www.encodeproject.org/files/ENCFF038GLI/@@download/ENCFF038GLI.bam released s3://encode-public/2017/01/08/b3075704-e9f1-4421-b797-3056c5a33039/ENCFF038GLI.bam ENCODE3 hg19 archived ENCFF691DUO bam bam unfiltered alignments hg19 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF699DOM/, /files/ENCFF144AGB/ 6515098505 ENCODE Processing Pipeline 721fdce0a284f78243dff0e1a820a73a https://www.encodeproject.org/files/ENCFF691DUO/@@download/ENCFF691DUO.bam released s3://encode-public/2017/01/08/7ac8fef3-85bc-4620-ae8c-d609af94b341/ENCFF691DUO.bam ENCODE3 hg19 archived ENCFF006FDF bam bam alignments hg19 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF699DOM/, /files/ENCFF144AGB/ 5116842081 ENCODE Processing Pipeline 0f52f1f0d89b2291f8272e0185e805c1 https://www.encodeproject.org/files/ENCFF006FDF/@@download/ENCFF006FDF.bam released s3://encode-public/2017/01/08/bfe4edf4-dd9f-47da-a386-dd450f7e982d/ENCFF006FDF.bam ENCODE3 hg19 archived ENCFF219HJZ bam bam unfiltered alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF314CVE/, /files/ENCFF066XSO/ 6751104185 ENCODE Processing Pipeline 67ea1ab061578065182d03ba83c8ce11 https://www.encodeproject.org/files/ENCFF219HJZ/@@download/ENCFF219HJZ.bam released s3://encode-public/2017/01/08/de32d3ed-d6a0-448c-a4a5-17b249d5e4db/ENCFF219HJZ.bam ENCODE3 GRCh38 archived ENCFF958JRH bam bam unfiltered alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF699DOM/, /files/ENCFF144AGB/ 6527611564 ENCODE Processing Pipeline d070e940fa406433a798ccd2118e4c10 https://www.encodeproject.org/files/ENCFF958JRH/@@download/ENCFF958JRH.bam released s3://encode-public/2017/01/08/30613a0b-bfb9-4a2a-91ca-59a235b2211a/ENCFF958JRH.bam ENCODE3 GRCh38 archived ENCFF708QBA bam bam alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF314CVE/, /files/ENCFF066XSO/ 5403748016 ENCODE Processing Pipeline ec837c6e3c44e7a9649ea43d878272ba https://www.encodeproject.org/files/ENCFF708QBA/@@download/ENCFF708QBA.bam released s3://encode-public/2017/01/08/b5dcbdb3-ee87-4710-b332-1c9c1c69098d/ENCFF708QBA.bam ENCODE3 GRCh38 archived ENCFF710IHJ bam bam unfiltered alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF144AGB/, /files/ENCFF110MCL/, /files/ENCFF699DOM/ 6611951643 ENCODE Processing Pipeline dc8a4a8cdedfda2d0ee167165f40cbe7 https://www.encodeproject.org/files/ENCFF710IHJ/@@download/ENCFF710IHJ.bam released s3://encode-public/2020/09/29/af386bb8-25e1-4811-acda-57ceb8081313/ENCFF710IHJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF768PEK bam bam alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF144AGB/, /files/ENCFF110MCL/, /files/ENCFF699DOM/ 5138353861 ENCODE Processing Pipeline eeebd8a7072c685703afd209beda2929 https://www.encodeproject.org/files/ENCFF768PEK/@@download/ENCFF768PEK.bam released s3://encode-public/2020/09/29/e40621a0-8843-482f-b46c-29de35dda9e3/ENCFF768PEK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF893ENR bam bam alignments GRCh38 ENCSR631ESZ Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF314CVE/, /files/ENCFF110MCL/, /files/ENCFF066XSO/ 5415054847 ENCODE Processing Pipeline cca5bc66e6ebe9853aaeeb671890901b https://www.encodeproject.org/files/ENCFF893ENR/@@download/ENCFF893ENR.bam released s3://encode-public/2020/09/29/53e10273-d246-44aa-adc7-f9d6278a05f4/ENCFF893ENR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF343UBC bam bam unfiltered alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF171QVC/, /files/ENCFF610OQN/ 6474754796 ENCODE Processing Pipeline a3c117c245f08f5580ca1f3ebb3e7069 https://www.encodeproject.org/files/ENCFF343UBC/@@download/ENCFF343UBC.bam released s3://encode-public/2020/09/29/9e8096d0-47e4-473c-9e7d-e7e123e44035/ENCFF343UBC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF287HCO bam bam alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF869MDG/, /files/ENCFF449TVW/ 5321899359 ENCODE Processing Pipeline a6cb76ebb5a625d077b3e10221d28b49 https://www.encodeproject.org/files/ENCFF287HCO/@@download/ENCFF287HCO.bam released s3://encode-public/2020/09/29/a19793ca-e0e3-4288-a6dd-8feca514ba30/ENCFF287HCO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF610OQN fastq fastq reads ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 2 /files/ENCFF171QVC/ 3393974595 Michael Snyder, Stanford 736a3c63a4cb00a42a5f410eab9045ae SRA:SRR14638258 https://www.encodeproject.org/files/ENCFF610OQN/@@download/ENCFF610OQN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/d78713e3-3051-4831-9c25-3af2a6cfbcd4/ENCFF610OQN.fastq.gz ENCFF449TVW fastq fastq reads ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 1 /files/ENCFF869MDG/ 3205241071 Michael Snyder, Stanford c15b91b3a817cd1fe1646752029da43e SRA:SRR14638257 https://www.encodeproject.org/files/ENCFF449TVW/@@download/ENCFF449TVW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/f9063444-b298-484f-8fcf-c43876841402/ENCFF449TVW.fastq.gz ENCFF869MDG fastq fastq reads ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 paired-ended 2 /files/ENCFF449TVW/ 3413457923 Michael Snyder, Stanford 98bd831c5309c306a036887c5e1a0ce3 SRA:SRR14638257 https://www.encodeproject.org/files/ENCFF869MDG/@@download/ENCFF869MDG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/e05f3fcd-0859-4c6d-a8d5-6c7f3b3887d3/ENCFF869MDG.fastq.gz ENCFF171QVC fastq fastq reads ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 paired-ended 1 /files/ENCFF610OQN/ 3148017707 Michael Snyder, Stanford ead1de1cca19819682da7764bb9e467a SRA:SRR14638258 https://www.encodeproject.org/files/ENCFF171QVC/@@download/ENCFF171QVC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/8bec3c39-3e4e-4e9c-904c-958d58cec0d2/ENCFF171QVC.fastq.gz ENCFF753CNN bam bam unfiltered alignments hg19 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF171QVC/, /files/ENCFF807MUK/, /files/ENCFF610OQN/ 6380551582 ENCODE Processing Pipeline d192b3adba6d3159c0f1fe0baad2d67b https://www.encodeproject.org/files/ENCFF753CNN/@@download/ENCFF753CNN.bam released s3://encode-public/2017/01/08/1b5d9f15-69d3-4fc2-a487-bb7797e7f2ef/ENCFF753CNN.bam ENCODE3 hg19 archived ENCFF305MID bam bam unfiltered alignments hg19 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF869MDG/, /files/ENCFF449TVW/, /files/ENCFF807MUK/ 6438702162 ENCODE Processing Pipeline 798cc3cab9f10d5fd6f8b5ca5edfdf5a https://www.encodeproject.org/files/ENCFF305MID/@@download/ENCFF305MID.bam released s3://encode-public/2017/01/08/e5377c39-a8b6-427d-a6fa-5b25b4fd5405/ENCFF305MID.bam ENCODE3 hg19 archived ENCFF033ZGP bam bam alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF869MDG/, /files/ENCFF449TVW/, /files/ENCFF643CGH/ 5317530184 ENCODE Processing Pipeline c32e58f05162c8a3dda0b5755e405f3f https://www.encodeproject.org/files/ENCFF033ZGP/@@download/ENCFF033ZGP.bam released s3://encode-public/2017/01/08/f2873810-2c34-48cc-8d8e-973c61ed5f21/ENCFF033ZGP.bam ENCODE3 GRCh38 archived ENCFF239POZ bam bam alignments hg19 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF171QVC/, /files/ENCFF807MUK/, /files/ENCFF610OQN/ 5183582371 ENCODE Processing Pipeline 98e2c45d227781f1aa37a2e2359f49a1 https://www.encodeproject.org/files/ENCFF239POZ/@@download/ENCFF239POZ.bam released s3://encode-public/2017/01/08/76518b16-de88-42d3-8f8e-636883b29a4c/ENCFF239POZ.bam ENCODE3 hg19 archived ENCFF877SGM bam bam alignments hg19 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF869MDG/, /files/ENCFF449TVW/, /files/ENCFF807MUK/ 5307871340 ENCODE Processing Pipeline 15a21bcb8f5d9d3730826abae8b89b74 https://www.encodeproject.org/files/ENCFF877SGM/@@download/ENCFF877SGM.bam released s3://encode-public/2017/01/08/fecc5896-03a2-4799-a7ec-95d0976b2735/ENCFF877SGM.bam ENCODE3 hg19 archived ENCFF742FYO bam bam unfiltered alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF869MDG/, /files/ENCFF449TVW/, /files/ENCFF643CGH/ 6450953897 ENCODE Processing Pipeline 11a3223db5e27d7302177c73bcddbe42 https://www.encodeproject.org/files/ENCFF742FYO/@@download/ENCFF742FYO.bam released s3://encode-public/2017/01/08/6cb73059-9fdd-4f46-8c48-96c192d6d389/ENCFF742FYO.bam ENCODE3 GRCh38 archived ENCFF251KUS bam bam unfiltered alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF171QVC/, /files/ENCFF643CGH/, /files/ENCFF610OQN/ 6392745703 ENCODE Processing Pipeline d5412e14bca11ebdd1b2d1cf892e85da https://www.encodeproject.org/files/ENCFF251KUS/@@download/ENCFF251KUS.bam released s3://encode-public/2017/01/08/3197c30f-5957-4ef5-add9-bfded13d4f73/ENCFF251KUS.bam ENCODE3 GRCh38 archived ENCFF280UBH bam bam alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF171QVC/, /files/ENCFF643CGH/, /files/ENCFF610OQN/ 5191393184 ENCODE Processing Pipeline 25aa0ce01ab4a1468ef9354f63297c66 https://www.encodeproject.org/files/ENCFF280UBH/@@download/ENCFF280UBH.bam released s3://encode-public/2017/01/08/78738364-ed93-47e5-9031-856e654e1a60/ENCFF280UBH.bam ENCODE3 GRCh38 archived ENCFF568KEG bam bam alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF171QVC/, /files/ENCFF610OQN/ 5200639050 ENCODE Processing Pipeline cc40ae900e22caa5447b0519fbec6e39 https://www.encodeproject.org/files/ENCFF568KEG/@@download/ENCFF568KEG.bam released s3://encode-public/2020/09/29/91ba1919-fb76-435c-ab0b-cb13c4952ddb/ENCFF568KEG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF226NHL bam bam unfiltered alignments GRCh38 ENCSR335GGM Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF869MDG/, /files/ENCFF449TVW/ 6530947844 ENCODE Processing Pipeline 7a5016f25126fec9638a52cfc442feb3 https://www.encodeproject.org/files/ENCFF226NHL/@@download/ENCFF226NHL.bam released s3://encode-public/2020/09/29/a2a2217e-af7b-4549-8974-67fbd82e444b/ENCFF226NHL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF383MBA fastq fastq reads ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 paired-ended 1 /files/ENCFF082MEA/ 3249510737 Michael Snyder, Stanford a36df5f20a4e19043a7de4d38cd559f3 SRA:SRR14638107 https://www.encodeproject.org/files/ENCFF383MBA/@@download/ENCFF383MBA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/884716bd-3e3c-4cd9-9f78-52f1107840db/ENCFF383MBA.fastq.gz ENCFF082MEA fastq fastq reads ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 paired-ended 2 /files/ENCFF383MBA/ 3457237735 Michael Snyder, Stanford 9bb1d97178055f35748f60931eb51436 SRA:SRR14638107 https://www.encodeproject.org/files/ENCFF082MEA/@@download/ENCFF082MEA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/32e890b6-8d19-4a73-8205-f2a34fdf38c1/ENCFF082MEA.fastq.gz ENCFF123SWE fastq fastq reads ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 paired-ended 1 /files/ENCFF241GYG/ 3397631812 Michael Snyder, Stanford 2151f1efa1ad19f76dc1c1f35f8e7c69 SRA:SRR14638106 https://www.encodeproject.org/files/ENCFF123SWE/@@download/ENCFF123SWE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/349832b5-ddc8-46d5-9f9a-696741f50689/ENCFF123SWE.fastq.gz ENCFF241GYG fastq fastq reads ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 paired-ended 2 /files/ENCFF123SWE/ 3629929153 Michael Snyder, Stanford 00cc0420ea4bad0919d7985382829e7d SRA:SRR14638106 https://www.encodeproject.org/files/ENCFF241GYG/@@download/ENCFF241GYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/894f80b3-d9cd-48f3-b36c-924c053bc199/ENCFF241GYG.fastq.gz ENCFF845SQR bam bam alignments hg19 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF123SWE/, /files/ENCFF807MUK/, /files/ENCFF241GYG/ 5404121091 ENCODE Processing Pipeline a75f022f2e2377bd8aea41d9af782092 https://www.encodeproject.org/files/ENCFF845SQR/@@download/ENCFF845SQR.bam released s3://encode-public/2017/01/08/ef8f6329-aaa5-4bdf-af89-6fb4055dd7a3/ENCFF845SQR.bam ENCODE3 hg19 archived ENCFF241CYG bam bam unfiltered alignments hg19 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF123SWE/, /files/ENCFF807MUK/, /files/ENCFF241GYG/ 6713624783 ENCODE Processing Pipeline d4f08401c7c0fb854ab0e1a129b21981 https://www.encodeproject.org/files/ENCFF241CYG/@@download/ENCFF241CYG.bam released s3://encode-public/2017/01/08/e44b35ac-e01f-4e2c-8650-8eb67c0a1d33/ENCFF241CYG.bam ENCODE3 hg19 archived ENCFF747YJV bam bam unfiltered alignments hg19 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF383MBA/, /files/ENCFF082MEA/, /files/ENCFF807MUK/ 6399765407 ENCODE Processing Pipeline ccb61b0f05970064beb3a1cca22f85a0 https://www.encodeproject.org/files/ENCFF747YJV/@@download/ENCFF747YJV.bam released s3://encode-public/2017/01/08/ff3f342d-44e2-4717-9839-2c271e68ff05/ENCFF747YJV.bam ENCODE3 hg19 archived ENCFF469IIP bam bam alignments hg19 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF383MBA/, /files/ENCFF082MEA/, /files/ENCFF807MUK/ 5062555448 ENCODE Processing Pipeline f90350f8e176eaac2d343c2ccbe60274 https://www.encodeproject.org/files/ENCFF469IIP/@@download/ENCFF469IIP.bam released s3://encode-public/2017/01/08/537b6dc1-3612-48a0-a284-67c0994e17e3/ENCFF469IIP.bam ENCODE3 hg19 archived ENCFF580IMZ bam bam alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF123SWE/, /files/ENCFF643CGH/, /files/ENCFF241GYG/ 5412672220 ENCODE Processing Pipeline c00c5b50ff5868320b093bbe08dc0732 https://www.encodeproject.org/files/ENCFF580IMZ/@@download/ENCFF580IMZ.bam released s3://encode-public/2017/01/08/548d1443-30d2-447f-9417-e2ff9c1b3cff/ENCFF580IMZ.bam ENCODE3 GRCh38 archived ENCFF986RCQ bam bam unfiltered alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF123SWE/, /files/ENCFF643CGH/, /files/ENCFF241GYG/ 6727098943 ENCODE Processing Pipeline 36d582a8efb6a8c8ccd0aa9097f92f1e https://www.encodeproject.org/files/ENCFF986RCQ/@@download/ENCFF986RCQ.bam released s3://encode-public/2017/01/08/d7ae44e8-3051-4ce1-947e-e18dc1313a35/ENCFF986RCQ.bam ENCODE3 GRCh38 archived ENCFF619KWB bam bam unfiltered alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF383MBA/, /files/ENCFF082MEA/, /files/ENCFF643CGH/ 6412045921 ENCODE Processing Pipeline aa816bc1682b49c38877e19737528f3c https://www.encodeproject.org/files/ENCFF619KWB/@@download/ENCFF619KWB.bam released s3://encode-public/2017/01/10/ebf8fde8-5153-4361-95c2-d8828e3bdb82/ENCFF619KWB.bam ENCODE3 GRCh38 archived ENCFF444OBR bam bam alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF383MBA/, /files/ENCFF082MEA/, /files/ENCFF643CGH/ 5072051464 ENCODE Processing Pipeline 088526292e7e0ba435320bc0dedcea9a https://www.encodeproject.org/files/ENCFF444OBR/@@download/ENCFF444OBR.bam released s3://encode-public/2017/01/10/df5b1c53-51de-4011-95b2-bdc6dc6a346a/ENCFF444OBR.bam ENCODE3 GRCh38 archived ENCFF216JKP bam bam unfiltered alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF082MEA/, /files/ENCFF110MCL/, /files/ENCFF383MBA/ 6493688480 ENCODE Processing Pipeline 405c119de92456ca278ed16b05fcde5a https://www.encodeproject.org/files/ENCFF216JKP/@@download/ENCFF216JKP.bam released s3://encode-public/2020/09/29/d820cab8-5832-4380-8cf3-28bc67d3fa86/ENCFF216JKP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF845ZAN bam bam unfiltered alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF241GYG/, /files/ENCFF123SWE/ 6813991009 ENCODE Processing Pipeline 54b8f4701eee86bf6afd4243f1f875f6 https://www.encodeproject.org/files/ENCFF845ZAN/@@download/ENCFF845ZAN.bam released s3://encode-public/2020/09/29/c713cd11-8264-4959-9a42-d5a36f8630fe/ENCFF845ZAN.bam ENCODE4 v1.5.1 GRCh38 released ENCFF161SFQ bam bam alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO005EGE/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF241GYG/, /files/ENCFF123SWE/ 5410084319 ENCODE Processing Pipeline 28fa90eabb6676b95a2d98e69b1f5f5f https://www.encodeproject.org/files/ENCFF161SFQ/@@download/ENCFF161SFQ.bam released s3://encode-public/2020/09/29/f9da9590-1796-49f1-a2cd-6c9bb1edfe10/ENCFF161SFQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF587KVF bam bam alignments GRCh38 ENCSR982AYN Control ChIP-seq /human-donors/ENCDO615NVN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2017-10-10 GGR 1 1_1 101 /files/ENCFF082MEA/, /files/ENCFF110MCL/, /files/ENCFF383MBA/ 5070933427 ENCODE Processing Pipeline 4924cedf2e6f543dcbd8d0aeda23984b https://www.encodeproject.org/files/ENCFF587KVF/@@download/ENCFF587KVF.bam released s3://encode-public/2020/09/29/0a703bb2-3e54-4f02-825c-55f80773a674/ENCFF587KVF.bam ENCODE4 v1.5.1 GRCh38 released ENCFF548WSP fastq fastq reads ENCSR606GBZ Control ChIP-seq /fly-donors/ENCDO744SDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37379/'], '@type': ['Target', 'Item'], 'name': 'CG10543-dmelanogaster', 'label': 'CG10543', '@id': '/targets/CG10543-dmelanogaster/', 'title': 'CG10543 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9367e780-b488-47de-91ab-558eff2cc18d', 'status': 'released'} dm3 2R 16882634 16900616 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 869019837 Kevin White, UChicago 94a04a3915ff95a9aaa9d429b55d6955 https://www.encodeproject.org/files/ENCFF548WSP/@@download/ENCFF548WSP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/06b0cd58-79a6-459e-b8c0-03f0221e1e83/ENCFF548WSP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF153ZPB bam bam alignments dm3 ENCSR606GBZ Control ChIP-seq /fly-donors/ENCDO744SDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37379/'], '@type': ['Target', 'Item'], 'name': 'CG10543-dmelanogaster', 'label': 'CG10543', '@id': '/targets/CG10543-dmelanogaster/', 'title': 'CG10543 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9367e780-b488-47de-91ab-558eff2cc18d', 'status': 'released'} dm3 2R 16882634 16900616 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF548WSP/ 1172342631 Kevin White, UChicago 148a0f3bace0ac3970944bf869bd158c https://www.encodeproject.org/files/ENCFF153ZPB/@@download/ENCFF153ZPB.bam released s3://encode-public/2017/09/12/7a077fe5-4bfa-438d-8076-1ee3acc5be78/ENCFF153ZPB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF421IFT bam bam alignments dm6 ENCSR606GBZ Control ChIP-seq /fly-donors/ENCDO744SDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37379/'], '@type': ['Target', 'Item'], 'name': 'CG10543-dmelanogaster', 'label': 'CG10543', '@id': '/targets/CG10543-dmelanogaster/', 'title': 'CG10543 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9367e780-b488-47de-91ab-558eff2cc18d', 'status': 'released'} dm3 2R 16882634 16900616 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF548WSP/ 1161521323 Kevin White, UChicago 4916c8ee40ae57e2aa38fc01ea4a1aa9 https://www.encodeproject.org/files/ENCFF421IFT/@@download/ENCFF421IFT.bam released s3://encode-public/2017/09/13/77230f6b-63d8-483f-9f43-350cdef03cc0/ENCFF421IFT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF457XIB bigWig bigWig read-depth normalized signal dm3 ENCSR606GBZ Control ChIP-seq /fly-donors/ENCDO744SDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37379/'], '@type': ['Target', 'Item'], 'name': 'CG10543-dmelanogaster', 'label': 'CG10543', '@id': '/targets/CG10543-dmelanogaster/', 'title': 'CG10543 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9367e780-b488-47de-91ab-558eff2cc18d', 'status': 'released'} dm3 2R 16882634 16900616 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF153ZPB/ 15477137 Kevin White, UChicago d2c19e106b252d9d9d7eeafaa9edcaa0 https://www.encodeproject.org/files/ENCFF457XIB/@@download/ENCFF457XIB.bigWig released s3://encode-public/2017/09/14/25dcd782-648a-49ee-bb57-c47c2c1b4165/ENCFF457XIB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF838ODQ bigWig bigWig signal of unique reads dm3 ENCSR606GBZ Control ChIP-seq /fly-donors/ENCDO744SDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37379/'], '@type': ['Target', 'Item'], 'name': 'CG10543-dmelanogaster', 'label': 'CG10543', '@id': '/targets/CG10543-dmelanogaster/', 'title': 'CG10543 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9367e780-b488-47de-91ab-558eff2cc18d', 'status': 'released'} dm3 2R 16882634 16900616 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF153ZPB/ 15461806 Kevin White, UChicago 0b4f0d11c22eb37bde1257b1235de7fa https://www.encodeproject.org/files/ENCFF838ODQ/@@download/ENCFF838ODQ.bigWig released s3://encode-public/2017/09/14/0dc1ec05-518f-49f3-8379-e8f7f55132c0/ENCFF838ODQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF215RSQ bigWig bigWig read-depth normalized signal dm6 ENCSR606GBZ Control ChIP-seq /fly-donors/ENCDO744SDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37379/'], '@type': ['Target', 'Item'], 'name': 'CG10543-dmelanogaster', 'label': 'CG10543', '@id': '/targets/CG10543-dmelanogaster/', 'title': 'CG10543 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9367e780-b488-47de-91ab-558eff2cc18d', 'status': 'released'} dm3 2R 16882634 16900616 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF421IFT/ 17704609 Kevin White, UChicago a835f35472b54de89d0caf347aa650ec https://www.encodeproject.org/files/ENCFF215RSQ/@@download/ENCFF215RSQ.bigWig released s3://encode-public/2017/09/14/6c90d804-2aa6-4578-8eeb-523a6e1035b0/ENCFF215RSQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF269YUC bigWig bigWig signal of unique reads dm6 ENCSR606GBZ Control ChIP-seq /fly-donors/ENCDO744SDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37379/'], '@type': ['Target', 'Item'], 'name': 'CG10543-dmelanogaster', 'label': 'CG10543', '@id': '/targets/CG10543-dmelanogaster/', 'title': 'CG10543 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '9367e780-b488-47de-91ab-558eff2cc18d', 'status': 'released'} dm3 2R 16882634 16900616 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF421IFT/ 17664049 Kevin White, UChicago d436dac9b1d3a783c58e445cc6763e6b https://www.encodeproject.org/files/ENCFF269YUC/@@download/ENCFF269YUC.bigWig released s3://encode-public/2017/09/14/fd2245c5-c62b-451b-828b-90554d501d99/ENCFF269YUC.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF929JZL fastq fastq reads ENCSR290UXF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} DNA 2016-10-11 ENCODE see document 1 1_1 50 single-ended 1833438310 Richard Myers, HAIB 3bc7a077105ee4e676967e9c55a4687c SRA:SRR5331579 https://www.encodeproject.org/files/ENCFF929JZL/@@download/ENCFF929JZL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/7a45cc4a-d85b-4dd4-bd0c-4877cf9b1194/ENCFF929JZL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF617DCM bam bam unfiltered alignments GRCh38 ENCSR290UXF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF929JZL/, /files/ENCFF643CGH/ 2038088117 ENCODE Processing Pipeline 9b4f4c072c5501cd661f3afb8093ee31 https://www.encodeproject.org/files/ENCFF617DCM/@@download/ENCFF617DCM.bam released s3://encode-public/2016/09/19/7ea28f0b-b031-4a1f-bac8-5a5f01fdbcef/ENCFF617DCM.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF568ONX bam bam unfiltered alignments hg19 ENCSR290UXF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF929JZL/, /files/ENCFF807MUK/ 2033222395 ENCODE Processing Pipeline e641eeb2fe462a68fc3c4c5bd5428727 https://www.encodeproject.org/files/ENCFF568ONX/@@download/ENCFF568ONX.bam released s3://encode-public/2016/09/19/19b70721-f6a4-406f-85ac-98c09dd49ab6/ENCFF568ONX.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF167KVB bam bam alignments GRCh38 ENCSR290UXF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF929JZL/, /files/ENCFF643CGH/ 1495678217 ENCODE Processing Pipeline 04fa622c2c63188b8a5c02eb6b353ce0 https://www.encodeproject.org/files/ENCFF167KVB/@@download/ENCFF167KVB.bam released s3://encode-public/2016/09/19/4a3ac718-4a6a-4acd-95d0-3a1148e4d8c6/ENCFF167KVB.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF943PEE bam bam alignments hg19 ENCSR290UXF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF929JZL/, /files/ENCFF807MUK/ 1495750346 ENCODE Processing Pipeline f0554ad4b08d964b913ed5532bf5c1c4 https://www.encodeproject.org/files/ENCFF943PEE/@@download/ENCFF943PEE.bam released s3://encode-public/2016/09/19/0878be7f-921f-45f3-a9b9-5682a8de2f8e/ENCFF943PEE.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF894YDY bam bam unfiltered alignments GRCh38 ENCSR290UXF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF929JZL/ 2028558230 ENCODE Processing Pipeline 61697d980007d0bdb7a3344ef5f64969 https://www.encodeproject.org/files/ENCFF894YDY/@@download/ENCFF894YDY.bam released s3://encode-public/2020/06/06/2b91da7a-bf0a-461a-a890-bedd2edadb9d/ENCFF894YDY.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF208MDL bam bam alignments GRCh38 ENCSR290UXF Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GABPA'], 'aliases': ['michael-snyder:TS-34'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2551/'], '@type': ['Target', 'Item'], 'label': 'GABPA', 'title': 'GABPA (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd8cab139-6045-4c2d-a721-0d42cfd82333', 'schema_version': '14', 'name': 'GABPA-human', '@id': '/targets/GABPA-human/', 'status': 'released'} DNA 2016-10-11 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF929JZL/ 1539963042 ENCODE Processing Pipeline 6babaa46216a631adda178c75dd6e885 https://www.encodeproject.org/files/ENCFF208MDL/@@download/ENCFF208MDL.bam released s3://encode-public/2020/06/06/b4c6f9d7-fed3-415f-a6e4-e5e0a71b8b4b/ENCFF208MDL.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF056ZBZ fastq fastq reads ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 175099553 Michael Snyder, Stanford 8e2402d56fdefe2de42a637d55a8f49a https://www.encodeproject.org/files/ENCFF056ZBZ/@@download/ENCFF056ZBZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/892f7b08-96cc-4bd1-97c2-752991d58520/ENCFF056ZBZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF776QPO fastq fastq reads ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 175098914 Michael Snyder, Stanford fd0bae9a15f911c181a7ec6b46efcc37 https://www.encodeproject.org/files/ENCFF776QPO/@@download/ENCFF776QPO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/d716aaf7-24ee-48d2-a5fb-6b5e5c764762/ENCFF776QPO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF881CGX bam bam alignments ce10 ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF056ZBZ/, /files/ENCFF776QPO/, /files/ENCFF987UMF/ 463188132 Kevin White, UChicago 4e0cccd265e45012b4dbb6b530e7982a https://www.encodeproject.org/files/ENCFF881CGX/@@download/ENCFF881CGX.bam released s3://encode-public/2017/04/27/cc465a5e-52b3-451f-8e8f-0790ba9fee37/ENCFF881CGX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF880CYH bam bam alignments ce11 ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF056ZBZ/, /files/ENCFF776QPO/, /files/ENCFF586MOL/ 463695686 Kevin White, UChicago bdcd7580e407b3163d553ee53515866e https://www.encodeproject.org/files/ENCFF880CYH/@@download/ENCFF880CYH.bam released s3://encode-public/2017/04/27/ae51b6f1-0984-4860-bd09-30276df014d9/ENCFF880CYH.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF810MRG bigWig bigWig read-depth normalized signal ce10 ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF881CGX/ 10059066 Kevin White, UChicago 773019f75ca3aedc1e906f7cc7cbfd04 https://www.encodeproject.org/files/ENCFF810MRG/@@download/ENCFF810MRG.bigWig released s3://encode-public/2017/04/29/a734d0e9-8ca4-4b0e-ae62-048d0a2674f8/ENCFF810MRG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF553SNZ bigWig bigWig signal of unique reads ce10 ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF881CGX/ 10001276 Kevin White, UChicago 1aaed0cfb58947e964c499af3a86e245 https://www.encodeproject.org/files/ENCFF553SNZ/@@download/ENCFF553SNZ.bigWig released s3://encode-public/2017/04/29/3012cf3b-e751-4730-9bbf-2338f3c11ec6/ENCFF553SNZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF708PHL bigWig bigWig read-depth normalized signal ce11 ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF880CYH/ 10046563 Kevin White, UChicago 7e8a8f77a2b2d34312a4251bacabc2a9 https://www.encodeproject.org/files/ENCFF708PHL/@@download/ENCFF708PHL.bigWig released s3://encode-public/2017/04/29/dcd8cc1e-4d09-411b-b92d-56c7a9d4fd72/ENCFF708PHL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF695AZT bigWig bigWig signal of unique reads ce11 ENCSR038TET Control ChIP-seq /worm-donors/ENCDO456QAC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/187642/'], '@type': ['Target', 'Item'], 'name': 'ceh-62-celegans', 'label': 'ceh-62', '@id': '/targets/ceh-62-celegans/', 'title': 'ceh-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b8598fc-4bcd-4425-8d09-a5c9278e50e7', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF880CYH/ 9996272 Kevin White, UChicago 92ffc5c7e36a94a19eb0348f129ea614 https://www.encodeproject.org/files/ENCFF695AZT/@@download/ENCFF695AZT.bigWig released s3://encode-public/2017/04/29/70f28e36-9428-4a10-93f3-778d28e59dcd/ENCFF695AZT.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF270HOB fastq fastq reads ENCSR076KHT Control ChIP-seq /fly-donors/ENCDO263PPB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34887/'], '@type': ['Target', 'Item'], 'name': 'CG15269-dmelanogaster', 'label': 'CG15269', '@id': '/targets/CG15269-dmelanogaster/', 'title': 'CG15269 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2be98a28-d392-4389-9109-006bd3e07f94', 'status': 'released'} dm3 2L 15096574 15117658 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 791402815 Kevin White, UChicago 7ad4b99c554b654fdd0f3e7b5f0d1eeb https://www.encodeproject.org/files/ENCFF270HOB/@@download/ENCFF270HOB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/296c4ab7-084f-417d-baf1-7b63e76e61eb/ENCFF270HOB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF651PCX bam bam alignments dm6 ENCSR076KHT Control ChIP-seq /fly-donors/ENCDO263PPB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34887/'], '@type': ['Target', 'Item'], 'name': 'CG15269-dmelanogaster', 'label': 'CG15269', '@id': '/targets/CG15269-dmelanogaster/', 'title': 'CG15269 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2be98a28-d392-4389-9109-006bd3e07f94', 'status': 'released'} dm3 2L 15096574 15117658 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF270HOB/, /files/ENCFF479RCH/ 1049534471 Kevin White, UChicago 88ba2015509071ce1ba10be9eeddbae1 https://www.encodeproject.org/files/ENCFF651PCX/@@download/ENCFF651PCX.bam released s3://encode-public/2018/12/07/97c82d64-65d2-4d98-9cb5-1d671ddee0d3/ENCFF651PCX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF906TTU bigWig bigWig read-depth normalized signal dm6 ENCSR076KHT Control ChIP-seq /fly-donors/ENCDO263PPB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34887/'], '@type': ['Target', 'Item'], 'name': 'CG15269-dmelanogaster', 'label': 'CG15269', '@id': '/targets/CG15269-dmelanogaster/', 'title': 'CG15269 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2be98a28-d392-4389-9109-006bd3e07f94', 'status': 'released'} dm3 2L 15096574 15117658 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF651PCX/ 17735744 Kevin White, UChicago 4612af79d369eeca8fe89cd0fc41d306 https://www.encodeproject.org/files/ENCFF906TTU/@@download/ENCFF906TTU.bigWig released s3://encode-public/2018/12/10/387a8e8c-2349-4c18-808b-259d5e3ab802/ENCFF906TTU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF336ZMF bigWig bigWig signal of unique reads dm6 ENCSR076KHT Control ChIP-seq /fly-donors/ENCDO263PPB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34887/'], '@type': ['Target', 'Item'], 'name': 'CG15269-dmelanogaster', 'label': 'CG15269', '@id': '/targets/CG15269-dmelanogaster/', 'title': 'CG15269 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '2be98a28-d392-4389-9109-006bd3e07f94', 'status': 'released'} dm3 2L 15096574 15117658 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF651PCX/ 17701060 Kevin White, UChicago 42986e6048318cc6f788d0a51190f06b https://www.encodeproject.org/files/ENCFF336ZMF/@@download/ENCFF336ZMF.bigWig released s3://encode-public/2018/12/10/058cbcf3-fedf-4304-a681-5d0c7610b606/ENCFF336ZMF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF511UFZ bam bam unfiltered alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF645DND/, /files/ENCFF110MCL/ 1273048031 ENCODE Processing Pipeline 9e5d1acf1510bec47d0bd36dbdb77ef5 https://www.encodeproject.org/files/ENCFF511UFZ/@@download/ENCFF511UFZ.bam released s3://encode-public/2020/09/29/295e25a3-8610-4d91-bb28-b7da256f3c6c/ENCFF511UFZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF424YPE bam bam unfiltered alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF027TUH/, /files/ENCFF110MCL/ 1262513943 ENCODE Processing Pipeline 951b8f09818dc5f126454a08408a7657 https://www.encodeproject.org/files/ENCFF424YPE/@@download/ENCFF424YPE.bam released s3://encode-public/2020/09/29/18d5edc4-5177-4bdb-a46b-e695560d6d85/ENCFF424YPE.bam ENCODE4 v1.5.1 GRCh38 released ENCFF480QMP fastq fastq reads ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 759640081 Tim Reddy, Duke e17bfcaffbdc0282dcb461d7324e3f4f SRA:SRR5129589 https://www.encodeproject.org/files/ENCFF480QMP/@@download/ENCFF480QMP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/e6204895-97c0-4160-b760-15e6d4a99196/ENCFF480QMP.fastq.gz ENCFF027TUH fastq fastq reads ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 935887857 Tim Reddy, Duke d2503e8f6f799bff456ba3a75b1be722 SRA:SRR5129590 https://www.encodeproject.org/files/ENCFF027TUH/@@download/ENCFF027TUH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/bfa1238c-ecc4-43dc-8735-aab965749d82/ENCFF027TUH.fastq.gz ENCFF645DND fastq fastq reads ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 941123865 Tim Reddy, Duke c27079f846e3ff7ee3d93d846e718834 SRA:SRR5129588 https://www.encodeproject.org/files/ENCFF645DND/@@download/ENCFF645DND.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/754233e2-131e-4f0b-a096-4fb76e8780a1/ENCFF645DND.fastq.gz ENCFF193ABY bam bam alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF027TUH/ 1022881663 Tim Reddy, Duke 21b9be3b61b7e5749a95942c98fbbff2 https://www.encodeproject.org/files/ENCFF193ABY/@@download/ENCFF193ABY.bam released s3://encode-public/2016/12/15/fd360548-8beb-4303-8762-7d20c7e374ba/ENCFF193ABY.bam Lab custom GRCh38 archived ENCFF222ACA bam bam alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF645DND/ 1025598813 Tim Reddy, Duke b0ca7a9197856719a9c968a8c099cc00 https://www.encodeproject.org/files/ENCFF222ACA/@@download/ENCFF222ACA.bam released s3://encode-public/2016/12/15/00683c56-b42d-49d2-806f-ea08748a801b/ENCFF222ACA.bam Lab custom GRCh38 archived ENCFF639UDD bam bam alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF480QMP/ 833137859 Tim Reddy, Duke fa0964d5ff29c7b511794d71e58c61ef https://www.encodeproject.org/files/ENCFF639UDD/@@download/ENCFF639UDD.bam released s3://encode-public/2016/12/15/8320442d-4541-400c-908e-a15efa03aa68/ENCFF639UDD.bam Lab custom GRCh38 archived ENCFF898UDD bam bam alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF645DND/, /files/ENCFF110MCL/ 1082791337 ENCODE Processing Pipeline 09a9068f694bfe5b66a46c5548cc2304 https://www.encodeproject.org/files/ENCFF898UDD/@@download/ENCFF898UDD.bam released s3://encode-public/2020/09/29/ac2d9d4a-bc95-4f4c-b3b4-08dc2d538bb2/ENCFF898UDD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF283MVQ bam bam alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF027TUH/, /files/ENCFF110MCL/ 1078316870 ENCODE Processing Pipeline 3997da3efa2ec8224d67403247771f2e https://www.encodeproject.org/files/ENCFF283MVQ/@@download/ENCFF283MVQ.bam released s3://encode-public/2020/09/29/acfc8931-4729-4b86-8a4f-f5a859a64f75/ENCFF283MVQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF446DSC bam bam alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF480QMP/, /files/ENCFF110MCL/ 876992686 ENCODE Processing Pipeline 2a2876d1351a48ccabb27f3f19666393 https://www.encodeproject.org/files/ENCFF446DSC/@@download/ENCFF446DSC.bam released s3://encode-public/2020/09/29/17432b03-8f79-40a0-b09f-3f239c5954e1/ENCFF446DSC.bam ENCODE4 v1.5.1 GRCh38 released ENCFF171PJJ bam bam unfiltered alignments GRCh38 ENCSR560DEL Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF480QMP/, /files/ENCFF110MCL/ 1033877499 ENCODE Processing Pipeline d0c0ff76805b7f5bd66131361feb28ed https://www.encodeproject.org/files/ENCFF171PJJ/@@download/ENCFF171PJJ.bam released s3://encode-public/2020/09/29/5bf051cb-cdd8-4d1b-b43a-ad0803a9ed69/ENCFF171PJJ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF279NIP fastq fastq reads ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF838ENS/ 2435110655 Michael Snyder, Stanford ff007b6a81ec4e517f3b2560dc8efce4 SRA:SRR6212685 https://www.encodeproject.org/files/ENCFF279NIP/@@download/ENCFF279NIP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/08830ad1-3159-4b43-ac19-2094d99bf706/ENCFF279NIP.fastq.gz ENCFF838ENS fastq fastq reads ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF279NIP/ 2842389845 Michael Snyder, Stanford 60c140ad76b4dee0a82fd441ca5215c6 SRA:SRR6212685 https://www.encodeproject.org/files/ENCFF838ENS/@@download/ENCFF838ENS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/09/202cf2dd-4702-4ada-b79f-0d437865487e/ENCFF838ENS.fastq.gz ENCFF798VAD bam bam alignments hg19 ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF838ENS/, /files/ENCFF807MUK/, /files/ENCFF279NIP/ 4341083968 ENCODE Processing Pipeline d6dbcc767d42091ad6cd9c8b73dd42a3 https://www.encodeproject.org/files/ENCFF798VAD/@@download/ENCFF798VAD.bam released s3://encode-public/2016/12/12/e949ecaf-122a-46d9-b224-6217833c7979/ENCFF798VAD.bam ENCODE3 hg19 archived ENCFF316TSB bam bam unfiltered alignments GRCh38 ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF838ENS/, /files/ENCFF643CGH/, /files/ENCFF279NIP/ 5262139376 ENCODE Processing Pipeline b3894856e35b59df8391f3b1248df719 https://www.encodeproject.org/files/ENCFF316TSB/@@download/ENCFF316TSB.bam released s3://encode-public/2016/12/12/ebfc74f6-a828-491d-8611-b56d1bbdeec0/ENCFF316TSB.bam ENCODE3 GRCh38 archived ENCFF471NLC bam bam unfiltered alignments hg19 ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF838ENS/, /files/ENCFF807MUK/, /files/ENCFF279NIP/ 5250042062 ENCODE Processing Pipeline b8607f997f4d186fb90969975c3900ca https://www.encodeproject.org/files/ENCFF471NLC/@@download/ENCFF471NLC.bam released s3://encode-public/2016/12/12/9375241a-1826-4d35-a96e-33745bff4d31/ENCFF471NLC.bam ENCODE3 hg19 archived ENCFF484UEF bam bam alignments GRCh38 ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 101 /files/ENCFF838ENS/, /files/ENCFF643CGH/, /files/ENCFF279NIP/ 4346763846 ENCODE Processing Pipeline 757ce6e59d276cedd21485c09cf9ba82 https://www.encodeproject.org/files/ENCFF484UEF/@@download/ENCFF484UEF.bam released s3://encode-public/2016/12/12/56c4a0de-28db-475e-bf9e-d80cc28e3d1c/ENCFF484UEF.bam ENCODE3 GRCh38 archived ENCFF106GIF bam bam unfiltered alignments GRCh38 ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF279NIP/, /files/ENCFF838ENS/ 5242355881 ENCODE Processing Pipeline 5fa22abefd896e3ac0f9315cbcc0a057 https://www.encodeproject.org/files/ENCFF106GIF/@@download/ENCFF106GIF.bam released s3://encode-public/2020/06/03/c8021513-5a56-4ff6-a177-80b84b0aadba/ENCFF106GIF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF478NAK bam bam alignments GRCh38 ENCSR118WAD Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0000992 ovary tissue Homo sapiens DNA 2017-01-31 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF279NIP/, /files/ENCFF838ENS/ 4269882438 ENCODE Processing Pipeline 9d32f5d508feed3fc9234c1798c6fd67 https://www.encodeproject.org/files/ENCFF478NAK/@@download/ENCFF478NAK.bam released s3://encode-public/2020/06/03/37ce81ed-bed3-4e98-93ad-ee9cf4f4c512/ENCFF478NAK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF180JCI fastq fastq reads ENCSR772SBK Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 363104102 Kevin White, UChicago 62e732f4e403d7cda376feba3a66a3bf https://www.encodeproject.org/files/ENCFF180JCI/@@download/ENCFF180JCI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/5ff4056f-789a-4f8d-a1fd-5b9071ebf158/ENCFF180JCI.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF279KJT bam bam alignments dm3 ENCSR772SBK Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF180JCI/ 483338160 Kevin White, UChicago 9fecc6441d3a4ec9bbee5b814601fa8a https://www.encodeproject.org/files/ENCFF279KJT/@@download/ENCFF279KJT.bam released s3://encode-public/2017/09/12/5d3277de-22c1-4d3b-8902-012ef6aa3326/ENCFF279KJT.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF392YMO bam bam alignments dm6 ENCSR772SBK Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF180JCI/ 480204112 Kevin White, UChicago 8ea392bcfc256d00765a08a9ca721478 https://www.encodeproject.org/files/ENCFF392YMO/@@download/ENCFF392YMO.bam released s3://encode-public/2017/09/13/b70f4c9c-d006-46d4-ba6d-f5a4a87b199b/ENCFF392YMO.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF523YCF bigWig bigWig signal of unique reads dm3 ENCSR772SBK Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF279KJT/ 15183913 Kevin White, UChicago 423444f0f745756ee96aee114eb0b45a https://www.encodeproject.org/files/ENCFF523YCF/@@download/ENCFF523YCF.bigWig released s3://encode-public/2017/09/14/c19a1fc6-e357-492e-9c65-80f511851fdd/ENCFF523YCF.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF013KPV bigWig bigWig read-depth normalized signal dm3 ENCSR772SBK Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF279KJT/ 15194713 Kevin White, UChicago d58c7b9510191f48c04f9b5bc515e6a5 https://www.encodeproject.org/files/ENCFF013KPV/@@download/ENCFF013KPV.bigWig released s3://encode-public/2017/09/14/c6977bfd-c7c0-4e84-93aa-c6d469611efd/ENCFF013KPV.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF213ODB bigWig bigWig read-depth normalized signal dm6 ENCSR772SBK Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF392YMO/ 17361022 Kevin White, UChicago 85c10fa550eeaba1e83512b2c503c2ed https://www.encodeproject.org/files/ENCFF213ODB/@@download/ENCFF213ODB.bigWig released s3://encode-public/2017/09/14/7ea07d06-3861-4b82-97df-a0f83fda0e70/ENCFF213ODB.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF735ATK bigWig bigWig signal of unique reads dm6 ENCSR772SBK Control ChIP-seq /fly-donors/ENCDO029UNF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38638/'], '@type': ['Target', 'Item'], 'name': 'Blimp-1-dmelanogaster', 'label': 'Blimp-1', '@id': '/targets/Blimp-1-dmelanogaster/', 'title': 'Blimp-1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '01ea6545-2e12-4a63-84c5-9b10336b5203', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF392YMO/ 17369469 Kevin White, UChicago 2f2d7676086b32d408f1bdc661f7041a https://www.encodeproject.org/files/ENCFF735ATK/@@download/ENCFF735ATK.bigWig released s3://encode-public/2017/09/14/c8e6926c-d026-4ac3-991c-b18410fd52a5/ENCFF735ATK.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF549MWD fastq fastq reads ENCSR689IML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10002/'], '@type': ['Target', 'Item'], 'name': 'NR2E3-human', 'label': 'NR2E3', '@id': '/targets/NR2E3-human/', 'title': 'NR2E3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1c8cb38b-c107-4614-88e0-24a80bb693f3', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF618DRV/ 2493654916 Michael Snyder, Stanford 1074e3a18fd9cbb00f9fe1f54c7dfa19 https://www.encodeproject.org/files/ENCFF549MWD/@@download/ENCFF549MWD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/14/cd7c4c2f-b25a-4d3d-b28c-37c3a21614b1/ENCFF549MWD.fastq.gz mild to moderate bottlenecking ENCFF618DRV fastq fastq reads ENCSR689IML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10002/'], '@type': ['Target', 'Item'], 'name': 'NR2E3-human', 'label': 'NR2E3', '@id': '/targets/NR2E3-human/', 'title': 'NR2E3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1c8cb38b-c107-4614-88e0-24a80bb693f3', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF618DRV/, /files/ENCFF549MWD/ 3623291159 ENCODE Processing Pipeline 294f965d6da1103329f74044eb770932 https://www.encodeproject.org/files/ENCFF028VBT/@@download/ENCFF028VBT.bam released s3://encode-public/2020/04/21/5bc03fb5-102e-4e2c-9c2b-377e1e3f7284/ENCFF028VBT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF784DGM bam bam unfiltered alignments GRCh38 ENCSR689IML Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10002/'], '@type': ['Target', 'Item'], 'name': 'NR2E3-human', 'label': 'NR2E3', '@id': '/targets/NR2E3-human/', 'title': 'NR2E3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1c8cb38b-c107-4614-88e0-24a80bb693f3', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF618DRV/, /files/ENCFF549MWD/ 5078271974 ENCODE Processing Pipeline ecf2ed9e8337edab82c9128ef3441046 https://www.encodeproject.org/files/ENCFF784DGM/@@download/ENCFF784DGM.bam released s3://encode-public/2020/04/21/2e24aede-3e8f-4410-b749-f25bc1d31294/ENCFF784DGM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF878OMO fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 410142550 Bradley Bernstein, Broad 0f41ed3b08298139e7c51754e00a3f8c SRA:SRR13804096 https://www.encodeproject.org/files/ENCFF878OMO/@@download/ENCFF878OMO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/09bd6ae2-c183-4ed1-a7e6-b4326137984e/ENCFF878OMO.fastq.gz ENCFF699DGZ fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 405405536 Bradley Bernstein, Broad 7dfe2b5981b393dee97af43047d7c02a SRA:SRR13804097 https://www.encodeproject.org/files/ENCFF699DGZ/@@download/ENCFF699DGZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b7f12791-e797-43ee-a93f-9c971893f5e5/ENCFF699DGZ.fastq.gz ENCFF111YAB fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 421764193 Bradley Bernstein, Broad e998db831fd9e8120460e54fb9cd8aaa SRA:SRR13804098 https://www.encodeproject.org/files/ENCFF111YAB/@@download/ENCFF111YAB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/75c17542-4f89-4bfb-a34e-78c264134c05/ENCFF111YAB.fastq.gz ENCFF904CYK fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 417124317 Bradley Bernstein, Broad 74fce314f9cd96c48b2c421d07e1eaaf SRA:SRR13804099 https://www.encodeproject.org/files/ENCFF904CYK/@@download/ENCFF904CYK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4da9d305-7280-46d2-9574-b47726308d08/ENCFF904CYK.fastq.gz ENCFF167PXI fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 427204004 Bradley Bernstein, Broad bcb25ad0f673fb9d2a36c95919b99570 SRA:SRR13804092 https://www.encodeproject.org/files/ENCFF167PXI/@@download/ENCFF167PXI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8b44355d-9149-4758-b7f7-a525fb27935f/ENCFF167PXI.fastq.gz ENCFF053KWV fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 415857134 Bradley Bernstein, Broad 5ca66eaaa501ec0dd29ec66d167fd7b6 SRA:SRR13804093 https://www.encodeproject.org/files/ENCFF053KWV/@@download/ENCFF053KWV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/da83bce1-4768-4bf6-b93b-f3a15b2b8514/ENCFF053KWV.fastq.gz ENCFF554UER fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 420156720 Bradley Bernstein, Broad d4e49ca236c4ae7bf0c9135df5a84507 SRA:SRR13804094 https://www.encodeproject.org/files/ENCFF554UER/@@download/ENCFF554UER.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ac50c9be-4b5a-406c-9b75-e164d4efabe9/ENCFF554UER.fastq.gz ENCFF939DWK fastq fastq reads ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 420699632 Bradley Bernstein, Broad b61c76b18cc2af7fe6a36bb2f1056e40 SRA:SRR13804095 https://www.encodeproject.org/files/ENCFF939DWK/@@download/ENCFF939DWK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/01900886-04c7-4d64-9b06-cf7ba6df1a2a/ENCFF939DWK.fastq.gz ENCFF817DTZ bam bam alignments GRCh38 ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF904CYK/, /files/ENCFF053KWV/, /files/ENCFF699DGZ/, /files/ENCFF878OMO/, /files/ENCFF167PXI/, /files/ENCFF111YAB/, /files/ENCFF554UER/, /files/ENCFF939DWK/ 2813056698 ENCODE Processing Pipeline e564abafb48a21494934d1d93be7e420 https://www.encodeproject.org/files/ENCFF817DTZ/@@download/ENCFF817DTZ.bam released s3://encode-public/2020/06/14/ce7badc0-912c-43ce-8579-d4bb6562ddcf/ENCFF817DTZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF554DYW bam bam unfiltered alignments GRCh38 ENCSR089ZLR Control ChIP-seq /human-donors/ENCDO520EJG/ UBERON:0008953 lower lobe of left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF110MCL/, /files/ENCFF904CYK/, /files/ENCFF053KWV/, /files/ENCFF699DGZ/, /files/ENCFF878OMO/, /files/ENCFF167PXI/, /files/ENCFF111YAB/, /files/ENCFF554UER/, /files/ENCFF939DWK/ 3325031671 ENCODE Processing Pipeline cde7ff8d8a4a29887b01a006bc6dcf79 https://www.encodeproject.org/files/ENCFF554DYW/@@download/ENCFF554DYW.bam released s3://encode-public/2020/06/14/860972d7-1c81-41a5-a42a-6d449ada43f6/ENCFF554DYW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF013JTL fastq fastq reads ENCSR293DLH Control ChIP-seq /fly-donors/ENCDO116ARM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/317817/'], '@type': ['Target', 'Item'], 'name': 'CG32006-dmelanogaster', 'label': 'CG32006', '@id': '/targets/CG32006-dmelanogaster/', 'title': 'CG32006 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd01f8922-ef4e-4bde-83e7-b6693554b463', 'status': 'released'} dm3 4 161775 181823 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 875656197 Kevin White, UChicago 466b494841a75ca5c7ba7196ee8cfe0b https://www.encodeproject.org/files/ENCFF013JTL/@@download/ENCFF013JTL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/d8b94327-db07-4eb8-bfda-21aac98bbc53/ENCFF013JTL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF994WZW bam bam alignments dm3 ENCSR293DLH Control ChIP-seq /fly-donors/ENCDO116ARM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/317817/'], '@type': ['Target', 'Item'], 'name': 'CG32006-dmelanogaster', 'label': 'CG32006', '@id': '/targets/CG32006-dmelanogaster/', 'title': 'CG32006 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd01f8922-ef4e-4bde-83e7-b6693554b463', 'status': 'released'} dm3 4 161775 181823 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF013JTL/, /files/ENCFF059UHX/ 1164893063 Kevin White, UChicago 1083050cafc9d0b8291455d9c009376d https://www.encodeproject.org/files/ENCFF994WZW/@@download/ENCFF994WZW.bam released s3://encode-public/2016/12/22/fc38fa34-eed3-43a2-915d-8d4c01f45b56/ENCFF994WZW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF960ZMW bam bam alignments dm6 ENCSR293DLH Control ChIP-seq /fly-donors/ENCDO116ARM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/317817/'], '@type': ['Target', 'Item'], 'name': 'CG32006-dmelanogaster', 'label': 'CG32006', '@id': '/targets/CG32006-dmelanogaster/', 'title': 'CG32006 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd01f8922-ef4e-4bde-83e7-b6693554b463', 'status': 'released'} dm3 4 161775 181823 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF013JTL/, /files/ENCFF479RCH/ 1161561161 Kevin White, UChicago 23d8da8f2ac69c9df3214740bcc1127d https://www.encodeproject.org/files/ENCFF960ZMW/@@download/ENCFF960ZMW.bam released s3://encode-public/2016/12/22/bac5f22e-f232-4bc8-9670-2fe15ee8f028/ENCFF960ZMW.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF620HPH bigWig bigWig signal of unique reads dm3 ENCSR293DLH Control ChIP-seq /fly-donors/ENCDO116ARM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/317817/'], '@type': ['Target', 'Item'], 'name': 'CG32006-dmelanogaster', 'label': 'CG32006', '@id': '/targets/CG32006-dmelanogaster/', 'title': 'CG32006 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd01f8922-ef4e-4bde-83e7-b6693554b463', 'status': 'released'} dm3 4 161775 181823 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF994WZW/ 15360737 Kevin White, UChicago fae8d2d4203eae61171581378df6f418 https://www.encodeproject.org/files/ENCFF620HPH/@@download/ENCFF620HPH.bigWig released s3://encode-public/2017/01/03/8e1c7acc-2dcb-45c1-b2c4-11460ea31b7d/ENCFF620HPH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF313AHB bigWig bigWig read-depth normalized signal dm3 ENCSR293DLH Control ChIP-seq /fly-donors/ENCDO116ARM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/317817/'], '@type': ['Target', 'Item'], 'name': 'CG32006-dmelanogaster', 'label': 'CG32006', '@id': '/targets/CG32006-dmelanogaster/', 'title': 'CG32006 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd01f8922-ef4e-4bde-83e7-b6693554b463', 'status': 'released'} dm3 4 161775 181823 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF994WZW/ 15387552 Kevin White, UChicago 36039894779e2e903c16e941f69ba1d0 https://www.encodeproject.org/files/ENCFF313AHB/@@download/ENCFF313AHB.bigWig released s3://encode-public/2017/01/03/eba20a09-b7b5-4c99-a99d-4eecd7f62225/ENCFF313AHB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF957ECA bigWig bigWig signal of unique reads dm6 ENCSR293DLH Control ChIP-seq /fly-donors/ENCDO116ARM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/317817/'], '@type': ['Target', 'Item'], 'name': 'CG32006-dmelanogaster', 'label': 'CG32006', '@id': '/targets/CG32006-dmelanogaster/', 'title': 'CG32006 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd01f8922-ef4e-4bde-83e7-b6693554b463', 'status': 'released'} dm3 4 161775 181823 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF960ZMW/ 17461694 Kevin White, UChicago 11e02ec429f6e57c05d9b3db5e060687 https://www.encodeproject.org/files/ENCFF957ECA/@@download/ENCFF957ECA.bigWig released s3://encode-public/2017/01/04/db1526fd-508c-448e-88db-492d1f34213e/ENCFF957ECA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF054SNI bigWig bigWig read-depth normalized signal dm6 ENCSR293DLH Control ChIP-seq /fly-donors/ENCDO116ARM/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/317817/'], '@type': ['Target', 'Item'], 'name': 'CG32006-dmelanogaster', 'label': 'CG32006', '@id': '/targets/CG32006-dmelanogaster/', 'title': 'CG32006 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd01f8922-ef4e-4bde-83e7-b6693554b463', 'status': 'released'} dm3 4 161775 181823 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF960ZMW/ 17500880 Kevin White, UChicago 4b6afbbb3022ca32923f561a0c867a72 https://www.encodeproject.org/files/ENCFF054SNI/@@download/ENCFF054SNI.bigWig released s3://encode-public/2017/01/04/b94ae141-b430-4a04-b43a-e4fdca5e6ffd/ENCFF054SNI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF654EET fastq fastq reads ENCSR733CQH Control ChIP-seq /fly-donors/ENCDO504YHQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36652/'], '@type': ['Target', 'Item'], 'name': 'CG10209-dmelanogaster', 'label': 'CG10209', '@id': '/targets/CG10209-dmelanogaster/', 'title': 'CG10209 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e606e25f-3cdb-40c3-a034-1651a0ae1f04', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1198983770 Kevin White, UChicago e3d8391799d97818cc75b38789b67b4b https://www.encodeproject.org/files/ENCFF654EET/@@download/ENCFF654EET.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/02f5fbc0-e983-451f-a5bc-2000592cfb34/ENCFF654EET.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF098FQZ bam bam alignments dm3 ENCSR733CQH Control ChIP-seq /fly-donors/ENCDO504YHQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36652/'], '@type': ['Target', 'Item'], 'name': 'CG10209-dmelanogaster', 'label': 'CG10209', '@id': '/targets/CG10209-dmelanogaster/', 'title': 'CG10209 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e606e25f-3cdb-40c3-a034-1651a0ae1f04', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF654EET/ 1629208902 Kevin White, UChicago 170a041d5a710f3f9bf053a57044c0af https://www.encodeproject.org/files/ENCFF098FQZ/@@download/ENCFF098FQZ.bam released s3://encode-public/2017/09/12/377e13f8-cdd1-45f2-97ab-aee2e8faa676/ENCFF098FQZ.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF263GSH bam bam alignments dm6 ENCSR733CQH Control ChIP-seq /fly-donors/ENCDO504YHQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36652/'], '@type': ['Target', 'Item'], 'name': 'CG10209-dmelanogaster', 'label': 'CG10209', '@id': '/targets/CG10209-dmelanogaster/', 'title': 'CG10209 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e606e25f-3cdb-40c3-a034-1651a0ae1f04', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF654EET/ 1617864032 Kevin White, UChicago 7898cf5f18061115c9984d3d019dc49a https://www.encodeproject.org/files/ENCFF263GSH/@@download/ENCFF263GSH.bam released s3://encode-public/2017/09/13/45545086-575c-484f-9717-29bd2dbf66b0/ENCFF263GSH.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF306GNL bigWig bigWig signal of unique reads dm3 ENCSR733CQH Control ChIP-seq /fly-donors/ENCDO504YHQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36652/'], '@type': ['Target', 'Item'], 'name': 'CG10209-dmelanogaster', 'label': 'CG10209', '@id': '/targets/CG10209-dmelanogaster/', 'title': 'CG10209 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e606e25f-3cdb-40c3-a034-1651a0ae1f04', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF098FQZ/ 15615187 Kevin White, UChicago 7df38c5ecc18e077f508ba2c6c01d9a1 https://www.encodeproject.org/files/ENCFF306GNL/@@download/ENCFF306GNL.bigWig released s3://encode-public/2017/09/14/1d43ea3f-15a6-49f9-aff2-b233d2086cde/ENCFF306GNL.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF910BJC bigWig bigWig read-depth normalized signal dm3 ENCSR733CQH Control ChIP-seq /fly-donors/ENCDO504YHQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36652/'], '@type': ['Target', 'Item'], 'name': 'CG10209-dmelanogaster', 'label': 'CG10209', '@id': '/targets/CG10209-dmelanogaster/', 'title': 'CG10209 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e606e25f-3cdb-40c3-a034-1651a0ae1f04', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF098FQZ/ 15560732 Kevin White, UChicago 854b11117825859bc6aa6b12f52fe671 https://www.encodeproject.org/files/ENCFF910BJC/@@download/ENCFF910BJC.bigWig released s3://encode-public/2017/09/14/0b71d508-7896-4690-9bdd-6f8fd9883df9/ENCFF910BJC.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF854ZJZ bigWig bigWig signal of unique reads dm6 ENCSR733CQH Control ChIP-seq /fly-donors/ENCDO504YHQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36652/'], '@type': ['Target', 'Item'], 'name': 'CG10209-dmelanogaster', 'label': 'CG10209', '@id': '/targets/CG10209-dmelanogaster/', 'title': 'CG10209 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e606e25f-3cdb-40c3-a034-1651a0ae1f04', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF263GSH/ 14072537 Kevin White, UChicago 1a7486c6401d903b842d21c601f61263 https://www.encodeproject.org/files/ENCFF854ZJZ/@@download/ENCFF854ZJZ.bigWig released s3://encode-public/2017/09/14/09ee8e60-51aa-4fde-8569-631968e1c578/ENCFF854ZJZ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF096NIL bigWig bigWig read-depth normalized signal dm6 ENCSR733CQH Control ChIP-seq /fly-donors/ENCDO504YHQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36652/'], '@type': ['Target', 'Item'], 'name': 'CG10209-dmelanogaster', 'label': 'CG10209', '@id': '/targets/CG10209-dmelanogaster/', 'title': 'CG10209 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e606e25f-3cdb-40c3-a034-1651a0ae1f04', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF263GSH/ 14015645 Kevin White, UChicago 39444fbe373c4f39a09ae06e64cd4b68 https://www.encodeproject.org/files/ENCFF096NIL/@@download/ENCFF096NIL.bigWig released s3://encode-public/2017/09/14/82478e6e-e2cc-48dc-8e5d-2a629ebef743/ENCFF096NIL.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF188SPM fastq fastq reads ENCSR610PBT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23125/'], '@type': ['Target', 'Item'], 'name': 'CAMTA2-human', 'label': 'CAMTA2', '@id': '/targets/CAMTA2-human/', 'title': 'CAMTA2 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'e21a66f4-0a4c-4f10-87c8-c6fe722742cd', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF452CRC/ 2022999709 Michael Snyder, Stanford a679730f1e57e5677e3f32efae9d5167 https://www.encodeproject.org/files/ENCFF188SPM/@@download/ENCFF188SPM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/1ec0f251-92d1-4c34-bf73-ad9a4a0177ec/ENCFF188SPM.fastq.gz ENCFF452CRC fastq fastq reads ENCSR610PBT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23125/'], '@type': ['Target', 'Item'], 'name': 'CAMTA2-human', 'label': 'CAMTA2', '@id': '/targets/CAMTA2-human/', 'title': 'CAMTA2 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'e21a66f4-0a4c-4f10-87c8-c6fe722742cd', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF188SPM/ 2287834722 Michael Snyder, Stanford 53650ded5df488ac04200c2eb56b0328 https://www.encodeproject.org/files/ENCFF452CRC/@@download/ENCFF452CRC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/5af5929b-bb19-4ec5-a34d-79fa90267cd8/ENCFF452CRC.fastq.gz ENCFF718JZR bam bam unfiltered alignments GRCh38 ENCSR610PBT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo 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'6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23125/'], '@type': ['Target', 'Item'], 'name': 'CAMTA2-human', 'label': 'CAMTA2', '@id': '/targets/CAMTA2-human/', 'title': 'CAMTA2 (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': 'e21a66f4-0a4c-4f10-87c8-c6fe722742cd', 'status': 'released'} DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF452CRC/, /files/ENCFF188SPM/ 3455984126 ENCODE Processing Pipeline 027842856c8bb18a75a4c7b96cbfb643 https://www.encodeproject.org/files/ENCFF812YJF/@@download/ENCFF812YJF.bam released s3://encode-public/2020/06/24/922fcc3f-ed32-4043-99b0-308937089966/ENCFF812YJF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF848NLY fastq fastq reads ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF592JZV/ 3910469915 Michael Snyder, Stanford 9dedad7f20162c02cfbf3b1f97329cbe SRA:SRR6212990 https://www.encodeproject.org/files/ENCFF848NLY/@@download/ENCFF848NLY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/26/397e854e-0c1f-4064-826e-a3f5acb4bbbe/ENCFF848NLY.fastq.gz mild to moderate bottlenecking ENCFF592JZV fastq fastq reads ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF848NLY/ 4043185516 Michael Snyder, Stanford ddf6caae9dd52d4daede1613994dd2f0 SRA:SRR6212990 https://www.encodeproject.org/files/ENCFF592JZV/@@download/ENCFF592JZV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/26/24bee303-5a9a-4c90-b78d-f5d55a7d6c77/ENCFF592JZV.fastq.gz mild to moderate bottlenecking ENCFF342LTC bam bam unfiltered alignments GRCh38 ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF848NLY/, /files/ENCFF643CGH/, /files/ENCFF592JZV/ 7603799123 ENCODE Processing Pipeline 7fa3d5e1e53948dbef4a7361fd8065d4 https://www.encodeproject.org/files/ENCFF342LTC/@@download/ENCFF342LTC.bam released s3://encode-public/2016/09/01/d826e36e-5f07-4f4f-b21c-1fd7e53ae7f5/ENCFF342LTC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF985KVW bam bam unfiltered alignments hg19 ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF848NLY/, /files/ENCFF807MUK/, /files/ENCFF592JZV/ 7591937680 ENCODE Processing Pipeline f71706de11ff02ad81ac94f233190e8c https://www.encodeproject.org/files/ENCFF985KVW/@@download/ENCFF985KVW.bam released s3://encode-public/2016/09/01/245c836b-c2a7-433d-9d85-8897913cff16/ENCFF985KVW.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF882RAK bam bam alignments hg19 ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF848NLY/, /files/ENCFF807MUK/, /files/ENCFF592JZV/ 5758812120 ENCODE Processing Pipeline e2e0d203fbdbeb061f714c4ff0266ed9 https://www.encodeproject.org/files/ENCFF882RAK/@@download/ENCFF882RAK.bam released s3://encode-public/2016/09/01/74f05cf3-ea8e-4ee6-876a-061c8b6a11a3/ENCFF882RAK.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF600VZB bam bam alignments GRCh38 ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF848NLY/, /files/ENCFF643CGH/, /files/ENCFF592JZV/ 5773284981 ENCODE Processing Pipeline 1e20d701374b88c3b68a00f2f3110b08 https://www.encodeproject.org/files/ENCFF600VZB/@@download/ENCFF600VZB.bam released s3://encode-public/2016/09/01/d9cf8f60-8672-43ca-9d18-aa2c491c08bf/ENCFF600VZB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF691KWE bam bam alignments GRCh38 ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF848NLY/, /files/ENCFF592JZV/ 5678641716 ENCODE Processing Pipeline 0f8652726b3f48caba80010bcebcb9f7 https://www.encodeproject.org/files/ENCFF691KWE/@@download/ENCFF691KWE.bam released s3://encode-public/2020/06/03/253c8115-f382-4641-a56e-f14165edab6d/ENCFF691KWE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF416KKS bam bam unfiltered alignments GRCh38 ENCSR187FNC Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF848NLY/, /files/ENCFF592JZV/ 7617418853 ENCODE Processing Pipeline fb1c673ef30a133ed8478f9b3ec5fdfc https://www.encodeproject.org/files/ENCFF416KKS/@@download/ENCFF416KKS.bam released s3://encode-public/2020/06/03/810e0fe8-e41d-400b-9e4d-92b5786ebc02/ENCFF416KKS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF248NZA fastq fastq reads ENCSR730QLJ Control ChIP-seq /fly-donors/ENCDO577BOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41395/'], '@type': ['Target', 'Item'], 'name': 'CG14711-dmelanogaster', 'label': 'CG14711', '@id': '/targets/CG14711-dmelanogaster/', 'title': 'CG14711 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '987f097c-0f8f-42da-a17e-59145bd546a1', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1410401176 Kevin White, UChicago 34f8d86d5af74ee7c9cf7abf535fd568 https://www.encodeproject.org/files/ENCFF248NZA/@@download/ENCFF248NZA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/e3c336b0-f0d2-4391-a433-185ef06d76fd/ENCFF248NZA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF334XXV bam bam alignments dm6 ENCSR730QLJ Control ChIP-seq /fly-donors/ENCDO577BOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41395/'], '@type': ['Target', 'Item'], 'name': 'CG14711-dmelanogaster', 'label': 'CG14711', '@id': '/targets/CG14711-dmelanogaster/', 'title': 'CG14711 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '987f097c-0f8f-42da-a17e-59145bd546a1', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF248NZA/, /files/ENCFF479RCH/ 1877018233 Kevin White, UChicago 67727a2617ad8558e7de49b94ee062fc https://www.encodeproject.org/files/ENCFF334XXV/@@download/ENCFF334XXV.bam released s3://encode-public/2018/12/07/bf4eccc3-26f6-47fd-8fb6-188a4916d0f6/ENCFF334XXV.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF029WQG bigWig bigWig read-depth normalized signal dm6 ENCSR730QLJ Control ChIP-seq /fly-donors/ENCDO577BOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41395/'], '@type': ['Target', 'Item'], 'name': 'CG14711-dmelanogaster', 'label': 'CG14711', '@id': '/targets/CG14711-dmelanogaster/', 'title': 'CG14711 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '987f097c-0f8f-42da-a17e-59145bd546a1', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF334XXV/ 17522613 Kevin White, UChicago 4ded1d0df5065adcbe3cd85bb3f8e58b https://www.encodeproject.org/files/ENCFF029WQG/@@download/ENCFF029WQG.bigWig released s3://encode-public/2018/12/10/44046188-f23b-4500-9fa2-2fa501214a43/ENCFF029WQG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF623OBA bigWig bigWig signal of unique reads dm6 ENCSR730QLJ Control ChIP-seq /fly-donors/ENCDO577BOZ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41395/'], '@type': ['Target', 'Item'], 'name': 'CG14711-dmelanogaster', 'label': 'CG14711', '@id': '/targets/CG14711-dmelanogaster/', 'title': 'CG14711 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '987f097c-0f8f-42da-a17e-59145bd546a1', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF334XXV/ 17560918 Kevin White, UChicago 46cf991be9cfffeb910b1db8ce682816 https://www.encodeproject.org/files/ENCFF623OBA/@@download/ENCFF623OBA.bigWig released s3://encode-public/2018/12/10/e6e13ce3-6d66-4391-8a6d-048c28441b6d/ENCFF623OBA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF975XEX fastq fastq reads ENCSR514NTD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF132ZXS/ 2498450412 Michael Snyder, Stanford da4c9485c4d4c317c3ac5dce8eda22cc SRA:SRR14105295 https://www.encodeproject.org/files/ENCFF975XEX/@@download/ENCFF975XEX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/d291788c-521d-43e6-8d2f-fcdd5e99c90d/ENCFF975XEX.fastq.gz ENCFF132ZXS fastq fastq reads ENCSR514NTD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF975XEX/ 2905240009 Michael Snyder, Stanford fd8a7baa37523c795728ff733e6ce255 SRA:SRR14105295 https://www.encodeproject.org/files/ENCFF132ZXS/@@download/ENCFF132ZXS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/97fa1f16-ae0a-4127-9718-90600c3c579e/ENCFF132ZXS.fastq.gz ENCFF250CRA bam bam unfiltered alignments GRCh38 ENCSR514NTD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF132ZXS/, /files/ENCFF975XEX/ 5430615823 ENCODE Processing Pipeline fd02731c31daf918d698358392b2e7c6 https://www.encodeproject.org/files/ENCFF250CRA/@@download/ENCFF250CRA.bam released s3://encode-public/2020/06/24/c3cd8502-b1d5-4ce6-af58-4ddfce1d4050/ENCFF250CRA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF834EID bam bam alignments GRCh38 ENCSR514NTD Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF132ZXS/, /files/ENCFF975XEX/ 4101354862 ENCODE Processing Pipeline 0c360412b010e8178dcb3287cc66e1ea https://www.encodeproject.org/files/ENCFF834EID/@@download/ENCFF834EID.bam released s3://encode-public/2020/06/24/b488b5a6-2b07-4ee8-aa8c-9d0246df6337/ENCFF834EID.bam ENCODE4 v1.4.0 GRCh38 released ENCFF698XYP fastq fastq reads ENCSR256ESG Control ChIP-seq /fly-donors/ENCDO771RRN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30975/'], '@type': ['Target', 'Item'], 'name': 'ewg-dmelanogaster', 'label': 'ewg', '@id': '/targets/ewg-dmelanogaster/', 'title': 'ewg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc139421-6acd-4f1a-911f-1d9571a2d97f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1136399239 Kevin White, UChicago 58c80b6106ef3763a03f5642af59d348 https://www.encodeproject.org/files/ENCFF698XYP/@@download/ENCFF698XYP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/ccba028d-263d-4ad7-b08a-32b60b8f6c09/ENCFF698XYP.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF764FSI bam bam alignments dm3 ENCSR256ESG Control ChIP-seq /fly-donors/ENCDO771RRN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30975/'], '@type': ['Target', 'Item'], 'name': 'ewg-dmelanogaster', 'label': 'ewg', '@id': '/targets/ewg-dmelanogaster/', 'title': 'ewg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc139421-6acd-4f1a-911f-1d9571a2d97f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF698XYP/ 1536823898 Kevin White, UChicago 3567967c4f1de25fd90a1ba4a60bdd7b https://www.encodeproject.org/files/ENCFF764FSI/@@download/ENCFF764FSI.bam released s3://encode-public/2017/09/12/932addb6-b911-4fe6-b58f-837f72ca52bd/ENCFF764FSI.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF449OIO bam bam alignments dm6 ENCSR256ESG Control ChIP-seq /fly-donors/ENCDO771RRN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30975/'], '@type': ['Target', 'Item'], 'name': 'ewg-dmelanogaster', 'label': 'ewg', '@id': '/targets/ewg-dmelanogaster/', 'title': 'ewg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc139421-6acd-4f1a-911f-1d9571a2d97f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF698XYP/ 1529044167 Kevin White, UChicago 4551629f5f9868f03f67c4ad82fb47d8 https://www.encodeproject.org/files/ENCFF449OIO/@@download/ENCFF449OIO.bam released s3://encode-public/2017/09/13/5c017de8-494b-4e4a-91b8-a5df47d8be0b/ENCFF449OIO.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF779YBD bigWig bigWig read-depth normalized signal dm3 ENCSR256ESG Control ChIP-seq /fly-donors/ENCDO771RRN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30975/'], '@type': ['Target', 'Item'], 'name': 'ewg-dmelanogaster', 'label': 'ewg', '@id': '/targets/ewg-dmelanogaster/', 'title': 'ewg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc139421-6acd-4f1a-911f-1d9571a2d97f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF764FSI/ 15584043 Kevin White, UChicago e81c8f8b79cdbab2cbaf743555af65c0 https://www.encodeproject.org/files/ENCFF779YBD/@@download/ENCFF779YBD.bigWig released s3://encode-public/2017/09/13/f4b909d8-08cf-44ff-95ac-ca034c633c93/ENCFF779YBD.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF009MQL bigWig bigWig signal of unique reads dm3 ENCSR256ESG Control ChIP-seq /fly-donors/ENCDO771RRN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30975/'], '@type': ['Target', 'Item'], 'name': 'ewg-dmelanogaster', 'label': 'ewg', '@id': '/targets/ewg-dmelanogaster/', 'title': 'ewg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc139421-6acd-4f1a-911f-1d9571a2d97f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF764FSI/ 15618570 Kevin White, UChicago dfe402ec6d6c283ee0865dd9bae52a5e https://www.encodeproject.org/files/ENCFF009MQL/@@download/ENCFF009MQL.bigWig released s3://encode-public/2017/09/13/58945e04-d94d-4b31-baa7-12a961e2e758/ENCFF009MQL.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF875ULH bigWig bigWig read-depth normalized signal dm6 ENCSR256ESG Control ChIP-seq /fly-donors/ENCDO771RRN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30975/'], '@type': ['Target', 'Item'], 'name': 'ewg-dmelanogaster', 'label': 'ewg', '@id': '/targets/ewg-dmelanogaster/', 'title': 'ewg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc139421-6acd-4f1a-911f-1d9571a2d97f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF449OIO/ 17748607 Kevin White, UChicago 960389c2c0a02c6fabe8261bd1983cb7 https://www.encodeproject.org/files/ENCFF875ULH/@@download/ENCFF875ULH.bigWig released s3://encode-public/2017/09/14/5fc36152-7318-4f45-ac47-a1124b2de6e0/ENCFF875ULH.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF659SQX bigWig bigWig signal of unique reads dm6 ENCSR256ESG Control ChIP-seq /fly-donors/ENCDO771RRN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/30975/'], '@type': ['Target', 'Item'], 'name': 'ewg-dmelanogaster', 'label': 'ewg', '@id': '/targets/ewg-dmelanogaster/', 'title': 'ewg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bc139421-6acd-4f1a-911f-1d9571a2d97f', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF449OIO/ 17779373 Kevin White, UChicago c5bf50be5c4ab2b9d0cdcac200bdf8c4 https://www.encodeproject.org/files/ENCFF659SQX/@@download/ENCFF659SQX.bigWig released s3://encode-public/2017/09/14/72a68076-7b12-4b16-bbdd-05e4a70acece/ENCFF659SQX.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF126KYO fastq fastq reads ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2394562129 Bing Ren, UCSD ef727039f615a5010663b3d7b43c1f0d SRA:SRR4235766 https://www.encodeproject.org/files/ENCFF126KYO/@@download/ENCFF126KYO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/557fdfe7-a026-419a-b70b-127c2437d15e/ENCFF126KYO.fastq.gz ENCFF814HQS fastq fastq reads ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2365288253 Bing Ren, UCSD 48b0114134333e486d8262a668cc779d SRA:SRR4235767 https://www.encodeproject.org/files/ENCFF814HQS/@@download/ENCFF814HQS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/4bf268f7-a3e3-4b36-bb38-06218a847733/ENCFF814HQS.fastq.gz ENCFF557WCA bam bam unfiltered alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF126KYO/ 3277114369 ENCODE Processing Pipeline d1a9dfeca66c5b528dc3cb700c72e8db https://www.encodeproject.org/files/ENCFF557WCA/@@download/ENCFF557WCA.bam released s3://encode-public/2016/07/14/84f7d080-970d-4a74-9a71-9b02df813f6e/ENCFF557WCA.bam ENCODE3 mm10 archived ENCFF856BVR bam bam unfiltered alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF814HQS/ 3328388751 ENCODE Processing Pipeline 468566d59fe78aaf9d4a4029dc9f778a https://www.encodeproject.org/files/ENCFF856BVR/@@download/ENCFF856BVR.bam released s3://encode-public/2016/07/14/aa58eba5-dc98-4d8d-882c-f065b7d48776/ENCFF856BVR.bam ENCODE3 mm10 archived ENCFF778IFH bam bam alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF126KYO/ 2429855724 ENCODE Processing Pipeline a439251e8c67a8f7fa58ca0b96ba8713 https://www.encodeproject.org/files/ENCFF778IFH/@@download/ENCFF778IFH.bam released s3://encode-public/2016/07/14/62cc9f28-0119-44ec-91e7-76c3739332ee/ENCFF778IFH.bam ENCODE3 mm10 archived ENCFF689YLF bam bam alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF814HQS/ 2456765503 ENCODE Processing Pipeline 4a5de0a72988628528b0ca6bec53ea0b https://www.encodeproject.org/files/ENCFF689YLF/@@download/ENCFF689YLF.bam released s3://encode-public/2016/07/14/c2cf9d51-73a1-4f6b-b83c-91c4ad0ab0e9/ENCFF689YLF.bam ENCODE3 mm10 archived ENCFF648NUV bam bam unfiltered alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF126KYO/ 3111509215 ENCODE Processing Pipeline 12dbffc5227ce26150cc1e0edc13a53f https://www.encodeproject.org/files/ENCFF648NUV/@@download/ENCFF648NUV.bam released s3://encode-public/2020/10/07/c7f6c10c-a257-46b7-b5db-45f580cbae04/ENCFF648NUV.bam ENCODE4 v1.5.1 mm10 released ENCFF525FRN bam bam alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF126KYO/ 2440891957 ENCODE Processing Pipeline f40dbcc335678c860602fc86510b38d4 https://www.encodeproject.org/files/ENCFF525FRN/@@download/ENCFF525FRN.bam released s3://encode-public/2020/10/07/f0eb2fc4-5502-43c0-84cc-d7b658a44c99/ENCFF525FRN.bam ENCODE4 v1.5.1 mm10 released ENCFF740FYW bam bam unfiltered alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF814HQS/, /files/ENCFF309GLL/ 3173362449 ENCODE Processing Pipeline 5ffdef20bb2ac72b8ee9f0962cdac210 https://www.encodeproject.org/files/ENCFF740FYW/@@download/ENCFF740FYW.bam released s3://encode-public/2020/10/07/880e1f08-5bee-4777-a58b-7485720808cb/ENCFF740FYW.bam ENCODE4 v1.5.1 mm10 released ENCFF861UMV bam bam alignments mm10 ENCSR776WPN Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001890 forebrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF814HQS/, /files/ENCFF309GLL/ 2417096655 ENCODE Processing Pipeline 87bb555f1e58ff582eabc257d9a75b71 https://www.encodeproject.org/files/ENCFF861UMV/@@download/ENCFF861UMV.bam released s3://encode-public/2020/10/07/133df63b-8d3a-49c0-8b4a-d830c4121ba5/ENCFF861UMV.bam ENCODE4 v1.5.1 mm10 released ENCFF249IDH fastq fastq reads ENCSR860PIR Control ChIP-seq /fly-donors/ENCDO762UHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32014/'], '@type': ['Target', 'Item'], 'name': 'CG2202-dmelanogaster', 'label': 'CG2202', '@id': '/targets/CG2202-dmelanogaster/', 'title': 'CG2202 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd9972742-b019-46e7-9ae6-45b552eaba5d', 'status': 'released'} dm3 X 10734726 10756683 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 702355620 Kevin White, UChicago 6be0f78231f70cddd288a32937a92f90 https://www.encodeproject.org/files/ENCFF249IDH/@@download/ENCFF249IDH.fastq.gz Illumina HiSeq 4000 /files/ENCFF675PXP/ released s3://encode-public/2018/09/18/593e1c0c-5ab1-4ae3-929d-cd24a9b00644/ENCFF249IDH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF835AMF fastq fastq reads ENCSR860PIR Control ChIP-seq /fly-donors/ENCDO762UHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32014/'], '@type': ['Target', 'Item'], 'name': 'CG2202-dmelanogaster', 'label': 'CG2202', '@id': '/targets/CG2202-dmelanogaster/', 'title': 'CG2202 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd9972742-b019-46e7-9ae6-45b552eaba5d', 'status': 'released'} dm3 X 10734726 10756683 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 2 2_1 50 single-ended 1507749145 Kevin White, UChicago a1363ac83a74a967591ac7385cc0eb08 https://www.encodeproject.org/files/ENCFF835AMF/@@download/ENCFF835AMF.fastq.gz Illumina HiSeq 4000 /files/ENCFF675PXP/ released s3://encode-public/2018/09/18/4810ce66-33a3-41af-9819-965d7fd62655/ENCFF835AMF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF409OMA bam bam alignments dm6 ENCSR860PIR Control ChIP-seq /fly-donors/ENCDO762UHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32014/'], '@type': ['Target', 'Item'], 'name': 'CG2202-dmelanogaster', 'label': 'CG2202', '@id': '/targets/CG2202-dmelanogaster/', 'title': 'CG2202 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd9972742-b019-46e7-9ae6-45b552eaba5d', 'status': 'released'} dm3 X 10734726 10756683 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 50 /files/ENCFF249IDH/, /files/ENCFF835AMF/, /files/ENCFF479RCH/ 2950064069 Kevin White, UChicago 54a9b58c0529b491106868859b0b2b9b https://www.encodeproject.org/files/ENCFF409OMA/@@download/ENCFF409OMA.bam released s3://encode-public/2018/09/19/cf4afe5c-0306-4cdc-b325-bf2f15587d6a/ENCFF409OMA.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF626ZOO bigWig bigWig signal of unique reads dm6 ENCSR860PIR Control ChIP-seq /fly-donors/ENCDO762UHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32014/'], '@type': ['Target', 'Item'], 'name': 'CG2202-dmelanogaster', 'label': 'CG2202', '@id': '/targets/CG2202-dmelanogaster/', 'title': 'CG2202 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd9972742-b019-46e7-9ae6-45b552eaba5d', 'status': 'released'} dm3 X 10734726 10756683 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF409OMA/ 14084410 Kevin White, UChicago 1cc29ea69ff5f636660178c9cb28042c https://www.encodeproject.org/files/ENCFF626ZOO/@@download/ENCFF626ZOO.bigWig released s3://encode-public/2018/09/19/0d0e0c07-c1b8-4bb1-b54b-78014b5b79ba/ENCFF626ZOO.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF658YST bigWig bigWig read-depth normalized signal dm6 ENCSR860PIR Control ChIP-seq /fly-donors/ENCDO762UHL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32014/'], '@type': ['Target', 'Item'], 'name': 'CG2202-dmelanogaster', 'label': 'CG2202', '@id': '/targets/CG2202-dmelanogaster/', 'title': 'CG2202 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd9972742-b019-46e7-9ae6-45b552eaba5d', 'status': 'released'} dm3 X 10734726 10756683 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1, 2 1_1, 2_1 /files/ENCFF409OMA/ 14130071 Kevin White, UChicago 15ac10c9f62aa7eab3803e7552f2131e https://www.encodeproject.org/files/ENCFF658YST/@@download/ENCFF658YST.bigWig released s3://encode-public/2018/09/19/987ff3f3-a3d8-4930-838b-ca5c76e782b3/ENCFF658YST.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF278WCY fastq fastq reads ENCSR873HOL Control ChIP-seq /fly-donors/ENCDO801PDP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40795/'], '@type': ['Target', 'Item'], 'name': 'CG10267-dmelanogaster', 'label': 'CG10267', '@id': '/targets/CG10267-dmelanogaster/', 'title': 'CG10267 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d72ddb3-c4eb-401e-9155-5e8221eb5964', 'status': 'released'} dm3 3R 2282875 2284545 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1354854571 Kevin White, UChicago 216bea5dda705dad1af3deaedf898627 https://www.encodeproject.org/files/ENCFF278WCY/@@download/ENCFF278WCY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/cfdaaba1-48bf-4b9a-8d00-d6434aed8054/ENCFF278WCY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF322TXQ bam bam alignments dm6 ENCSR873HOL Control ChIP-seq /fly-donors/ENCDO801PDP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40795/'], '@type': ['Target', 'Item'], 'name': 'CG10267-dmelanogaster', 'label': 'CG10267', '@id': '/targets/CG10267-dmelanogaster/', 'title': 'CG10267 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d72ddb3-c4eb-401e-9155-5e8221eb5964', 'status': 'released'} dm3 3R 2282875 2284545 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF278WCY/, /files/ENCFF479RCH/ 1809612808 Kevin White, UChicago bf86d16bf18194a89ad70d8ec736293e https://www.encodeproject.org/files/ENCFF322TXQ/@@download/ENCFF322TXQ.bam released s3://encode-public/2018/12/07/a6b29545-e9f8-4ed9-80da-242e87027433/ENCFF322TXQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF884TUW bigWig bigWig signal of unique reads dm6 ENCSR873HOL Control ChIP-seq /fly-donors/ENCDO801PDP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40795/'], '@type': ['Target', 'Item'], 'name': 'CG10267-dmelanogaster', 'label': 'CG10267', '@id': '/targets/CG10267-dmelanogaster/', 'title': 'CG10267 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d72ddb3-c4eb-401e-9155-5e8221eb5964', 'status': 'released'} dm3 3R 2282875 2284545 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF322TXQ/ 17844568 Kevin White, UChicago 5d90fd9333886c6b1ad3c477619c8bf2 https://www.encodeproject.org/files/ENCFF884TUW/@@download/ENCFF884TUW.bigWig released s3://encode-public/2018/12/10/b7dc78d5-1183-4878-b623-df2c610afeba/ENCFF884TUW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF749HLF bigWig bigWig read-depth normalized signal dm6 ENCSR873HOL Control ChIP-seq /fly-donors/ENCDO801PDP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40795/'], '@type': ['Target', 'Item'], 'name': 'CG10267-dmelanogaster', 'label': 'CG10267', '@id': '/targets/CG10267-dmelanogaster/', 'title': 'CG10267 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5d72ddb3-c4eb-401e-9155-5e8221eb5964', 'status': 'released'} dm3 3R 2282875 2284545 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF322TXQ/ 17783080 Kevin White, UChicago 8dc2c99f15136a6fc7136b89a799e5fc https://www.encodeproject.org/files/ENCFF749HLF/@@download/ENCFF749HLF.bigWig released s3://encode-public/2018/12/10/afa8ca84-2c4c-43e7-8e03-87261b58472d/ENCFF749HLF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF892KDP fastq fastq reads ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2400569660 Bing Ren, UCSD b675a6634195f3a12dc7ac92c3e7a634 SRA:SRR4235599 https://www.encodeproject.org/files/ENCFF892KDP/@@download/ENCFF892KDP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/e0f00052-c168-4d76-83bf-407d28208f75/ENCFF892KDP.fastq.gz ENCFF366TEJ fastq fastq reads ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 2994900939 Bing Ren, UCSD ff348b29be5c04ff8bb0462f8b3c1bb8 SRA:SRR4235600 https://www.encodeproject.org/files/ENCFF366TEJ/@@download/ENCFF366TEJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/06/29/d4bf2453-0ce2-4719-b455-6586af0e17b7/ENCFF366TEJ.fastq.gz ENCFF732UTF bam bam unfiltered alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF892KDP/ 3380096263 ENCODE Processing Pipeline 819caf73885118f4844cc4edc8a948b8 https://www.encodeproject.org/files/ENCFF732UTF/@@download/ENCFF732UTF.bam released s3://encode-public/2016/07/14/f42c632f-b4b2-4d03-a858-0b51750e7f55/ENCFF732UTF.bam ENCODE3 mm10 archived ENCFF049WZF bam bam unfiltered alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF366TEJ/ 4044494978 ENCODE Processing Pipeline d11a6d999b27b183fdb516afc42d4be7 https://www.encodeproject.org/files/ENCFF049WZF/@@download/ENCFF049WZF.bam released s3://encode-public/2016/07/14/4255614e-884e-4c83-b81f-e76390f567ed/ENCFF049WZF.bam ENCODE3 mm10 archived ENCFF344GQQ bam bam alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 51 /files/ENCFF018NEO/, /files/ENCFF892KDP/ 2494507891 ENCODE Processing Pipeline 7e2e4da6f774d1e7090ae4468088a688 https://www.encodeproject.org/files/ENCFF344GQQ/@@download/ENCFF344GQQ.bam released s3://encode-public/2016/07/14/2503baaf-634e-4476-9c75-32e2fd3107d3/ENCFF344GQQ.bam ENCODE3 mm10 archived ENCFF181QWR bam bam alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 51 /files/ENCFF018NEO/, /files/ENCFF366TEJ/ 2991473841 ENCODE Processing Pipeline f683b0a364334c5b045fb2d16251cf96 https://www.encodeproject.org/files/ENCFF181QWR/@@download/ENCFF181QWR.bam released s3://encode-public/2016/07/14/39db2dfb-2310-4149-b588-58f86ad14294/ENCFF181QWR.bam ENCODE3 mm10 archived ENCFF789XSU bam bam alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF892KDP/ 2454718337 ENCODE Processing Pipeline b1ef78480f01e312917d2306cf4adb28 https://www.encodeproject.org/files/ENCFF789XSU/@@download/ENCFF789XSU.bam released s3://encode-public/2020/10/08/dcbbba8c-e53c-4bed-a550-bdde227ebc5d/ENCFF789XSU.bam ENCODE4 v1.5.1 mm10 released ENCFF586LIA bam bam unfiltered alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF366TEJ/ 3841369710 ENCODE Processing Pipeline 4f513a0d15aa0b7faa3a784099b6f618 https://www.encodeproject.org/files/ENCFF586LIA/@@download/ENCFF586LIA.bam released s3://encode-public/2020/10/08/d88cc2a1-1df4-4882-a71d-1d42d7821c36/ENCFF586LIA.bam ENCODE4 v1.5.1 mm10 released ENCFF261RKI bam bam unfiltered alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF892KDP/ 3227274380 ENCODE Processing Pipeline 54734700307ed263af0241336702da9c https://www.encodeproject.org/files/ENCFF261RKI/@@download/ENCFF261RKI.bam released s3://encode-public/2020/10/08/f1ccae0a-a9b7-40b7-bf26-998a6e52de95/ENCFF261RKI.bam ENCODE4 v1.5.1 mm10 released ENCFF728RIM bam bam alignments mm10 ENCSR191XBS Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002028 hindbrain tissue Mus musculus DNA SDS 2016-07-19 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF366TEJ/ 3006393469 ENCODE Processing Pipeline dd3eec64f6d029b17517c8b11a4971b2 https://www.encodeproject.org/files/ENCFF728RIM/@@download/ENCFF728RIM.bam released s3://encode-public/2020/10/08/40d76004-e791-44b0-a271-28c168d9d641/ENCFF728RIM.bam ENCODE4 v1.5.1 mm10 released ENCFF938CNG fastq fastq reads ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF235UKQ/ 2717163322 Michael Snyder, Stanford c13e290aea72c9a9b07bd38e5ad2bbf3 SRA:SRR8660352 https://www.encodeproject.org/files/ENCFF938CNG/@@download/ENCFF938CNG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/27/667f0ab9-0487-49c8-9097-5f8b28cf3103/ENCFF938CNG.fastq.gz mild to moderate bottlenecking ENCFF235UKQ fastq fastq reads ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF938CNG/ 2807499811 Michael Snyder, Stanford 2ad1389f1f16621de69bc7f7d43de7ec SRA:SRR8660352 https://www.encodeproject.org/files/ENCFF235UKQ/@@download/ENCFF235UKQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/27/f51ff27f-492e-420d-8fb0-6aec6d499cdf/ENCFF235UKQ.fastq.gz mild to moderate bottlenecking ENCFF952LCO bam bam unfiltered alignments GRCh38 ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF235UKQ/, /files/ENCFF643CGH/, /files/ENCFF938CNG/ 5501127472 ENCODE Processing Pipeline 172de75527e7e32043e995f6555ad804 https://www.encodeproject.org/files/ENCFF952LCO/@@download/ENCFF952LCO.bam released s3://encode-public/2016/09/01/0406e954-2097-4da3-aac8-9967cf1a72e8/ENCFF952LCO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF956XYC bam bam unfiltered alignments hg19 ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF235UKQ/, /files/ENCFF807MUK/, /files/ENCFF938CNG/ 5490202466 ENCODE Processing Pipeline 8d4b1dc3c131077d4e67f96834978c9e https://www.encodeproject.org/files/ENCFF956XYC/@@download/ENCFF956XYC.bam released s3://encode-public/2016/09/01/e393f427-fd50-4951-87f8-1e8831cbbf61/ENCFF956XYC.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF651KAL bam bam alignments GRCh38 ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF235UKQ/, /files/ENCFF643CGH/, /files/ENCFF938CNG/ 4406395108 ENCODE Processing Pipeline 52c341dce521eeebbbf7decd18803e75 https://www.encodeproject.org/files/ENCFF651KAL/@@download/ENCFF651KAL.bam released s3://encode-public/2016/09/01/53571ebe-01b6-416d-93ff-52aafb66e6a9/ENCFF651KAL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF124VAC bam bam alignments hg19 ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF235UKQ/, /files/ENCFF807MUK/, /files/ENCFF938CNG/ 4398588547 ENCODE Processing Pipeline 17e0c1104ac4207ef733a942e7f7e31f https://www.encodeproject.org/files/ENCFF124VAC/@@download/ENCFF124VAC.bam released s3://encode-public/2016/09/01/5c9c4171-f6ac-4cfa-baf4-1da7ff5a3117/ENCFF124VAC.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF032MJI bam bam unfiltered alignments GRCh38 ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF938CNG/, /files/ENCFF235UKQ/ 5494977031 ENCODE Processing Pipeline 656597ddd460c3628fa258ab952b43b9 https://www.encodeproject.org/files/ENCFF032MJI/@@download/ENCFF032MJI.bam released s3://encode-public/2020/06/02/ced2919a-8312-46ca-a3a0-3a89f7a9bed9/ENCFF032MJI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF888VLC bam bam alignments GRCh38 ENCSR411EGZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF938CNG/, /files/ENCFF235UKQ/ 4325322768 ENCODE Processing Pipeline 0c538a02fa4422b3766ddf4322775356 https://www.encodeproject.org/files/ENCFF888VLC/@@download/ENCFF888VLC.bam released s3://encode-public/2020/06/02/57395423-4ec1-4d57-a71f-d5efdabcf068/ENCFF888VLC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF490ZCU fastq fastq reads ENCSR676KGV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1731'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5915/'], '@type': ['Target', 'Item'], 'name': 'RARB-human', 'label': 'RARB', '@id': '/targets/RARB-human/', 'title': 'RARB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98996f4-bbf7-4c11-93a1-5df8ba198cc4', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF842CJO/ 2180548486 Michael Snyder, Stanford f5b0be0fbc9a9d4e1d16b2812579c0a2 SRA:SRR14834678 https://www.encodeproject.org/files/ENCFF490ZCU/@@download/ENCFF490ZCU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/14/c40a1e48-eb3d-494a-a0ae-b35df6ae460a/ENCFF490ZCU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF842CJO fastq fastq reads ENCSR676KGV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1731'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5915/'], '@type': ['Target', 'Item'], 'name': 'RARB-human', 'label': 'RARB', '@id': '/targets/RARB-human/', 'title': 'RARB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98996f4-bbf7-4c11-93a1-5df8ba198cc4', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF490ZCU/ 2557842812 Michael Snyder, Stanford d226d5bd8bcc733d57037c4e8c4dc2e9 SRA:SRR14834678 https://www.encodeproject.org/files/ENCFF842CJO/@@download/ENCFF842CJO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/14/c985c1ff-9a10-4fc0-b361-29fe27926420/ENCFF842CJO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF281FMF bam bam unfiltered alignments GRCh38 ENCSR676KGV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1731'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5915/'], '@type': ['Target', 'Item'], 'name': 'RARB-human', 'label': 'RARB', '@id': '/targets/RARB-human/', 'title': 'RARB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98996f4-bbf7-4c11-93a1-5df8ba198cc4', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF490ZCU/, /files/ENCFF842CJO/ 4431854194 ENCODE Processing Pipeline 931e292716ea7ad914d6beef787db43e https://www.encodeproject.org/files/ENCFF281FMF/@@download/ENCFF281FMF.bam released s3://encode-public/2020/05/15/ec414f4e-3bc2-453d-9234-fd2770544596/ENCFF281FMF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF856GNW bam bam alignments GRCh38 ENCSR676KGV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1731'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5915/'], '@type': ['Target', 'Item'], 'name': 'RARB-human', 'label': 'RARB', '@id': '/targets/RARB-human/', 'title': 'RARB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98996f4-bbf7-4c11-93a1-5df8ba198cc4', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF490ZCU/, /files/ENCFF842CJO/ 3181480974 ENCODE Processing Pipeline 199bb4acfaa493dea052ca26c13ed618 https://www.encodeproject.org/files/ENCFF856GNW/@@download/ENCFF856GNW.bam released s3://encode-public/2020/05/15/b5f99666-4e3c-4e6c-a86f-328093f1d447/ENCFF856GNW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF957PUB fastq fastq reads ENCSR137DAC Control ChIP-seq /fly-donors/ENCDO701OHW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34483/'], '@type': ['Target', 'Item'], 'name': 'CG12299-dmelanogaster', 'label': 'CG12299', '@id': '/targets/CG12299-dmelanogaster/', 'title': 'CG12299 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd94730e5-b698-4618-8e4e-db8df26e43ce', 'status': 'released'} dm3 2L 10735777 10756990 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 430938539 Kevin White, UChicago 9a1c30f728fb97ac6021cdee0007859f https://www.encodeproject.org/files/ENCFF957PUB/@@download/ENCFF957PUB.fastq.gz Illumina HiSeq 4000 /files/ENCFF713JPJ/ released s3://encode-public/2018/09/18/cd0d3b2f-5ada-454e-9871-b2d0aa598d8a/ENCFF957PUB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF823UUX bam bam alignments dm6 ENCSR137DAC Control ChIP-seq /fly-donors/ENCDO701OHW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34483/'], '@type': ['Target', 'Item'], 'name': 'CG12299-dmelanogaster', 'label': 'CG12299', '@id': '/targets/CG12299-dmelanogaster/', 'title': 'CG12299 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd94730e5-b698-4618-8e4e-db8df26e43ce', 'status': 'released'} dm3 2L 10735777 10756990 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF957PUB/, /files/ENCFF479RCH/ 545031744 Kevin White, UChicago 7b3e59ad39de09a636cdd3073fc75524 https://www.encodeproject.org/files/ENCFF823UUX/@@download/ENCFF823UUX.bam released s3://encode-public/2018/09/19/fa2beba0-5f96-4f94-bd0a-b46e77716c3c/ENCFF823UUX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF237ZUV bigWig bigWig signal of unique reads dm6 ENCSR137DAC Control ChIP-seq /fly-donors/ENCDO701OHW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34483/'], '@type': ['Target', 'Item'], 'name': 'CG12299-dmelanogaster', 'label': 'CG12299', '@id': '/targets/CG12299-dmelanogaster/', 'title': 'CG12299 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd94730e5-b698-4618-8e4e-db8df26e43ce', 'status': 'released'} dm3 2L 10735777 10756990 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF823UUX/ 17397107 Kevin White, UChicago 7be563f1ffff1e7a3f47c46b8a85ede8 https://www.encodeproject.org/files/ENCFF237ZUV/@@download/ENCFF237ZUV.bigWig released s3://encode-public/2018/09/19/e4d0c797-900c-46ba-b211-37050d6a3b35/ENCFF237ZUV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF504UYG bigWig bigWig read-depth normalized signal dm6 ENCSR137DAC Control ChIP-seq /fly-donors/ENCDO701OHW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34483/'], '@type': ['Target', 'Item'], 'name': 'CG12299-dmelanogaster', 'label': 'CG12299', '@id': '/targets/CG12299-dmelanogaster/', 'title': 'CG12299 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd94730e5-b698-4618-8e4e-db8df26e43ce', 'status': 'released'} dm3 2L 10735777 10756990 DNA 2018-09-26 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF823UUX/ 17351308 Kevin White, UChicago cc3e8c5190c5a5f7dbc18935646ef805 https://www.encodeproject.org/files/ENCFF504UYG/@@download/ENCFF504UYG.bigWig released s3://encode-public/2018/09/19/7b72d788-abdf-43ed-819f-9b1dbeb73100/ENCFF504UYG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF388DJH fastq fastq reads ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 77014106 Michael Snyder, Stanford 9ae1ca59e5b7e43acb8a502bef39043d https://www.encodeproject.org/files/ENCFF388DJH/@@download/ENCFF388DJH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/1c0afa23-15ea-4acd-b877-2d7969ed2910/ENCFF388DJH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF384WPM fastq fastq reads ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 4 4_1 32 single-ended 134606529 Michael Snyder, Stanford ee7ece00f033c5fae562e19cda08f708 https://www.encodeproject.org/files/ENCFF384WPM/@@download/ENCFF384WPM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/867ccdc2-95c7-4c44-8da5-7263a6ef4a05/ENCFF384WPM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF497SGH fastq fastq reads ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 83299222 Michael Snyder, Stanford f4a817356b6fad74d9f169ad5583f363 https://www.encodeproject.org/files/ENCFF497SGH/@@download/ENCFF497SGH.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/72388815-54f6-4c29-a0a3-f64cffb5681e/ENCFF497SGH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF036VYV fastq fastq reads ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 3 3_1 32 single-ended 150694950 Michael Snyder, Stanford 653f7f48f18768400ae171fcc2764dde https://www.encodeproject.org/files/ENCFF036VYV/@@download/ENCFF036VYV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/32a33bea-2797-421e-95bb-a6a078124b0d/ENCFF036VYV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF273YDX bam bam alignments ce10 ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 32 /files/ENCFF388DJH/, /files/ENCFF497SGH/, /files/ENCFF036VYV/, /files/ENCFF987UMF/, /files/ENCFF384WPM/ 567949046 Kevin White, UChicago 744e027bb43ddf6357d3a6b4682389c6 https://www.encodeproject.org/files/ENCFF273YDX/@@download/ENCFF273YDX.bam released s3://encode-public/2017/04/27/5145f8b2-d0d3-44a9-abd2-c99bb36f1c80/ENCFF273YDX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF079KBO bam bam alignments ce11 ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 32 /files/ENCFF388DJH/, /files/ENCFF497SGH/, /files/ENCFF036VYV/, /files/ENCFF586MOL/, /files/ENCFF384WPM/ 568536717 Kevin White, UChicago b3176e68df6896d306f2a4046f76980f https://www.encodeproject.org/files/ENCFF079KBO/@@download/ENCFF079KBO.bam released s3://encode-public/2017/04/27/2c14e760-3b30-40fc-903c-c70754298a95/ENCFF079KBO.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF707LNC bigWig bigWig read-depth normalized signal ce10 ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF273YDX/ 10034942 Kevin White, UChicago e91d183675f92183b290dabca873f535 https://www.encodeproject.org/files/ENCFF707LNC/@@download/ENCFF707LNC.bigWig released s3://encode-public/2017/04/29/e98c6d3d-810f-4515-8228-37c2416ed8bd/ENCFF707LNC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF646HDS bigWig bigWig signal of unique reads ce10 ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF273YDX/ 9980892 Kevin White, UChicago 3d6dea2133ae28c95aa92feb867b7f73 https://www.encodeproject.org/files/ENCFF646HDS/@@download/ENCFF646HDS.bigWig released s3://encode-public/2017/04/29/a539f77e-fd15-4636-8fad-16b18a11deb1/ENCFF646HDS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF933SPD bigWig bigWig read-depth normalized signal ce11 ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF079KBO/ 10034781 Kevin White, UChicago 124280dc809556fbdbd3b93262e3c126 https://www.encodeproject.org/files/ENCFF933SPD/@@download/ENCFF933SPD.bigWig released s3://encode-public/2017/04/29/59d43e51-b5ff-4baa-98e9-f5169860217e/ENCFF933SPD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF251QPK bigWig bigWig signal of unique reads ce11 ENCSR994WLI Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2, 3, 4 1_1, 2_1, 3_1, 4_1 /files/ENCFF079KBO/ 9977416 Kevin White, UChicago dcac44758aa0ff598fac0f156aa4ceee https://www.encodeproject.org/files/ENCFF251QPK/@@download/ENCFF251QPK.bigWig released s3://encode-public/2017/04/29/5a731dae-3c3b-4374-b80c-6c5e0dcd1844/ENCFF251QPK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF247EGL bam bam unfiltered alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF096EDH/, /files/ENCFF110MCL/ 1631174290 ENCODE Processing Pipeline 8c3b3ec2531a25337b17d5420d2ff674 https://www.encodeproject.org/files/ENCFF247EGL/@@download/ENCFF247EGL.bam released s3://encode-public/2020/09/29/41c428c9-1253-48e4-aac0-b4e85b8c66ae/ENCFF247EGL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF796QVO bam bam alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF315QEN/ 1079720339 ENCODE Processing Pipeline 9e85937c66f430477d5b20290ff146fa https://www.encodeproject.org/files/ENCFF796QVO/@@download/ENCFF796QVO.bam released s3://encode-public/2020/09/29/69c8994a-8b32-4c65-b457-cd1a4dcc6834/ENCFF796QVO.bam ENCODE4 v1.5.1 GRCh38 released ENCFF315QEN fastq fastq reads ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 single-ended 940446942 Tim Reddy, Duke 1fb4ff8ed60fbc1c6ca76eeebff09ede SRA:SRR5129560 https://www.encodeproject.org/files/ENCFF315QEN/@@download/ENCFF315QEN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/e73cd72d-80cc-4cf5-b545-d86b943f59e4/ENCFF315QEN.fastq.gz ENCFF160BRR fastq fastq reads ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 single-ended 825029724 Tim Reddy, Duke 02d774ad6ac229c60c228f031a4265df SRA:SRR5129562 https://www.encodeproject.org/files/ENCFF160BRR/@@download/ENCFF160BRR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/b5e2490e-44e9-4061-a7db-84caae7ba2b6/ENCFF160BRR.fastq.gz ENCFF096EDH fastq fastq reads ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 single-ended 1213994351 Tim Reddy, Duke f620ea051c76385b4c7f673864ea09ec SRA:SRR5129561 https://www.encodeproject.org/files/ENCFF096EDH/@@download/ENCFF096EDH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/12/15/6de4e67f-e692-44b2-a3a4-e0bd27bce436/ENCFF096EDH.fastq.gz ENCFF175SZI bam bam alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF315QEN/ 1024997962 Tim Reddy, Duke 57ab942a1a520d7f7460f6a72fa059f0 https://www.encodeproject.org/files/ENCFF175SZI/@@download/ENCFF175SZI.bam released s3://encode-public/2016/12/15/e75dcf72-2aeb-45b4-a10d-f56d26fa5179/ENCFF175SZI.bam Lab custom GRCh38 archived ENCFF046XBU bam bam alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF096EDH/ 1300241378 Tim Reddy, Duke 334ef2f644812f9e2e999f2bb896f4a1 https://www.encodeproject.org/files/ENCFF046XBU/@@download/ENCFF046XBU.bam released s3://encode-public/2016/12/15/158626ce-02df-42d8-866b-d921881a1f07/ENCFF046XBU.bam Lab custom GRCh38 archived ENCFF043GAS bam bam alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF220FIN/, /files/ENCFF160BRR/ 904301059 Tim Reddy, Duke 4cf311f44203358e11db34a2529141ad https://www.encodeproject.org/files/ENCFF043GAS/@@download/ENCFF043GAS.bam released s3://encode-public/2016/12/15/4083d202-3577-4ef8-894c-1013d8809e02/ENCFF043GAS.bam Lab custom GRCh38 archived ENCFF137TII bam bam unfiltered alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF160BRR/ 1121420427 ENCODE Processing Pipeline 3c16004a45936ea56e1fd5f36adad8d0 https://www.encodeproject.org/files/ENCFF137TII/@@download/ENCFF137TII.bam released s3://encode-public/2020/09/29/373db5e1-cbdc-4da7-a8fe-78548185e7e1/ENCFF137TII.bam ENCODE4 v1.5.1 GRCh38 released ENCFF482OCD bam bam alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 2 2_1 51 /files/ENCFF096EDH/, /files/ENCFF110MCL/ 1371807305 ENCODE Processing Pipeline acb9a855ec2929c10b156e27656e01b9 https://www.encodeproject.org/files/ENCFF482OCD/@@download/ENCFF482OCD.bam released s3://encode-public/2020/09/29/280f65b5-fb53-4c13-8ecf-fd13cb56dd84/ENCFF482OCD.bam ENCODE4 v1.5.1 GRCh38 released ENCFF655PND bam bam unfiltered alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 3 3_1 51 /files/ENCFF110MCL/, /files/ENCFF315QEN/ 1260432070 ENCODE Processing Pipeline 1ffc57ed79e647252ead137b0734a7e2 https://www.encodeproject.org/files/ENCFF655PND/@@download/ENCFF655PND.bam released s3://encode-public/2020/09/29/9df5aaad-cf56-4903-82e4-910eb395f407/ENCFF655PND.bam ENCODE4 v1.5.1 GRCh38 released ENCFF958BCL bam bam alignments GRCh38 ENCSR382EJS Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA formaldehyde 2016-12-20 GGR sonication (Bioruptor Twin) >200 1 1_1 51 /files/ENCFF110MCL/, /files/ENCFF160BRR/ 949390746 ENCODE Processing Pipeline d92ae3c19b68770a3a27de724169f17b https://www.encodeproject.org/files/ENCFF958BCL/@@download/ENCFF958BCL.bam released s3://encode-public/2020/09/29/9e208231-1f89-46f5-9fd2-65c2d45a99ac/ENCFF958BCL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF814WTT fastq fastq reads ENCSR042HRU Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 2516109092 Richard Myers, HAIB dcbb5959c28ba65fd7ca156fc8e0d866 SRA:SRR14103649 https://www.encodeproject.org/files/ENCFF814WTT/@@download/ENCFF814WTT.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2019/05/07/ce1347fc-6ebd-4bd4-a429-3c54b8774df0/ENCFF814WTT.fastq.gz mild to moderate bottlenecking ENCFF745CUS bam bam unfiltered alignments GRCh38 ENCSR042HRU Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF814WTT/ 2313348080 ENCODE Processing Pipeline 9cf3b72e079862bdce21bc46e3d5b64d https://www.encodeproject.org/files/ENCFF745CUS/@@download/ENCFF745CUS.bam released s3://encode-public/2020/04/20/0363c947-7316-4644-b05c-c753a0335c25/ENCFF745CUS.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF855UPJ bam bam alignments GRCh38 ENCSR042HRU Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF814WTT/ 1323037398 ENCODE Processing Pipeline 538672e270ce8f4dcd31ef1055ddb278 https://www.encodeproject.org/files/ENCFF855UPJ/@@download/ENCFF855UPJ.bam released s3://encode-public/2020/04/20/3f6276be-e0f0-4a51-8e2c-b2c3a117c1d4/ENCFF855UPJ.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF545OLF bam bam alignments GRCh38 ENCSR042HRU Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF814WTT/, /files/ENCFF110MCL/ 1420104860 ENCODE Processing Pipeline 37ac237590f20d764b51424382acc52d https://www.encodeproject.org/files/ENCFF545OLF/@@download/ENCFF545OLF.bam released s3://encode-public/2020/06/24/3a002c3b-cc96-4c65-a8bb-fcca1e2281e6/ENCFF545OLF.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF995GTV bam bam unfiltered alignments GRCh38 ENCSR042HRU Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 75 /files/ENCFF814WTT/, /files/ENCFF110MCL/ 1966911084 ENCODE Processing Pipeline 45e28ae97455ff09abbc49a3c4528d06 https://www.encodeproject.org/files/ENCFF995GTV/@@download/ENCFF995GTV.bam released s3://encode-public/2020/06/24/aa6ddf22-4442-4515-806a-5a6148ae5cec/ENCFF995GTV.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF756JYD fastq fastq reads ENCSR720HML Control ChIP-seq /fly-donors/ENCDO285ZEC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33388/'], '@type': ['Target', 'Item'], 'name': 'CG11723-dmelanogaster', 'label': 'CG11723', '@id': '/targets/CG11723-dmelanogaster/', 'title': 'CG11723 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1dd7d34c-e927-4a60-9cff-75c7e3f83d5d', 'status': 'released'} dm3 2L 2141710 2162180 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 3937313432 Kevin White, UChicago 2f08090c372004b591a3673a4f1a74ac https://www.encodeproject.org/files/ENCFF756JYD/@@download/ENCFF756JYD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/ba874de9-ed61-415e-a644-306dd4c93388/ENCFF756JYD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF731MNJ bam bam alignments dm3 ENCSR720HML Control ChIP-seq /fly-donors/ENCDO285ZEC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33388/'], '@type': ['Target', 'Item'], 'name': 'CG11723-dmelanogaster', 'label': 'CG11723', '@id': '/targets/CG11723-dmelanogaster/', 'title': 'CG11723 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1dd7d34c-e927-4a60-9cff-75c7e3f83d5d', 'status': 'released'} dm3 2L 2141710 2162180 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF756JYD/, /files/ENCFF059UHX/ 5434344498 Kevin White, UChicago f9c4008a6bb037e764a3e7697a35e458 https://www.encodeproject.org/files/ENCFF731MNJ/@@download/ENCFF731MNJ.bam released s3://encode-public/2016/12/21/518f4251-fd79-47d9-bd77-31617a45c2f1/ENCFF731MNJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF826FOR bam bam alignments dm6 ENCSR720HML Control ChIP-seq /fly-donors/ENCDO285ZEC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33388/'], '@type': ['Target', 'Item'], 'name': 'CG11723-dmelanogaster', 'label': 'CG11723', '@id': '/targets/CG11723-dmelanogaster/', 'title': 'CG11723 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1dd7d34c-e927-4a60-9cff-75c7e3f83d5d', 'status': 'released'} dm3 2L 2141710 2162180 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF756JYD/, /files/ENCFF479RCH/ 5390988251 Kevin White, UChicago 33e762753da4109d47b9fceabfcb935e https://www.encodeproject.org/files/ENCFF826FOR/@@download/ENCFF826FOR.bam released s3://encode-public/2016/12/22/71ceb057-5cb2-4e54-a82b-da1c059ebd26/ENCFF826FOR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF114ZNT bigWig bigWig read-depth normalized signal dm3 ENCSR720HML Control ChIP-seq /fly-donors/ENCDO285ZEC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33388/'], '@type': ['Target', 'Item'], 'name': 'CG11723-dmelanogaster', 'label': 'CG11723', '@id': '/targets/CG11723-dmelanogaster/', 'title': 'CG11723 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1dd7d34c-e927-4a60-9cff-75c7e3f83d5d', 'status': 'released'} dm3 2L 2141710 2162180 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF731MNJ/ 15883343 Kevin White, UChicago 25e6ba3361b43bfdf86f37914438a8a4 https://www.encodeproject.org/files/ENCFF114ZNT/@@download/ENCFF114ZNT.bigWig released s3://encode-public/2017/01/03/71504646-4a58-4e5f-9e28-b704cbad296d/ENCFF114ZNT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF400TAN bigWig bigWig signal of unique reads dm3 ENCSR720HML Control ChIP-seq /fly-donors/ENCDO285ZEC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33388/'], '@type': ['Target', 'Item'], 'name': 'CG11723-dmelanogaster', 'label': 'CG11723', '@id': '/targets/CG11723-dmelanogaster/', 'title': 'CG11723 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1dd7d34c-e927-4a60-9cff-75c7e3f83d5d', 'status': 'released'} dm3 2L 2141710 2162180 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF731MNJ/ 15891965 Kevin White, UChicago f4aab93177dca4b302dc098fad16560b https://www.encodeproject.org/files/ENCFF400TAN/@@download/ENCFF400TAN.bigWig released s3://encode-public/2017/01/03/c67e4e13-ccd2-460e-9ae2-992ef96a5a45/ENCFF400TAN.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF334FKY bigWig bigWig signal of unique reads dm6 ENCSR720HML Control ChIP-seq /fly-donors/ENCDO285ZEC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33388/'], '@type': ['Target', 'Item'], 'name': 'CG11723-dmelanogaster', 'label': 'CG11723', '@id': '/targets/CG11723-dmelanogaster/', 'title': 'CG11723 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1dd7d34c-e927-4a60-9cff-75c7e3f83d5d', 'status': 'released'} dm3 2L 2141710 2162180 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF826FOR/ 17837167 Kevin White, UChicago 1b060867ea3c50b0d773e295ed69107a https://www.encodeproject.org/files/ENCFF334FKY/@@download/ENCFF334FKY.bigWig released s3://encode-public/2017/01/03/60186dec-c0eb-43ff-9d83-c092f7583922/ENCFF334FKY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF304NEW bigWig bigWig read-depth normalized signal dm6 ENCSR720HML Control ChIP-seq /fly-donors/ENCDO285ZEC/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33388/'], '@type': ['Target', 'Item'], 'name': 'CG11723-dmelanogaster', 'label': 'CG11723', '@id': '/targets/CG11723-dmelanogaster/', 'title': 'CG11723 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '1dd7d34c-e927-4a60-9cff-75c7e3f83d5d', 'status': 'released'} dm3 2L 2141710 2162180 DNA 2017-01-10 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF826FOR/ 17839507 Kevin White, UChicago 6ba72be7cf10b8c2ba6b12ac603e7b6b https://www.encodeproject.org/files/ENCFF304NEW/@@download/ENCFF304NEW.bigWig released s3://encode-public/2017/01/03/e4337d2a-53b0-4117-aa3d-7437691432b7/ENCFF304NEW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF442FJZ fastq fastq reads ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 single-ended 1042208746 Xiang-Dong Fu, UCSD 8a40640cae3104c125e1755a039635e4 SRA:SRR10049543 https://www.encodeproject.org/files/ENCFF442FJZ/@@download/ENCFF442FJZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/12/f33491cc-e00b-40ac-b440-969ff304af4e/ENCFF442FJZ.fastq.gz low read length ENCFF269ATE fastq fastq reads ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 single-ended 1173211706 Xiang-Dong Fu, UCSD 359e1db9bc1baa10482917b372450785 SRA:SRR10049544 https://www.encodeproject.org/files/ENCFF269ATE/@@download/ENCFF269ATE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/12/833e1c40-119d-4e61-9054-484433d37298/ENCFF269ATE.fastq.gz low read length ENCFF137JPI bam bam alignments hg19 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF269ATE/ 1257908167 ENCODE Processing Pipeline e6754ae32f0293d7e1acba1aaf91eeb7 https://www.encodeproject.org/files/ENCFF137JPI/@@download/ENCFF137JPI.bam released s3://encode-public/2017/02/08/3826b05a-0b9d-4176-be68-7bc686784236/ENCFF137JPI.bam ENCODE3 hg19 archived low read length ENCFF920RYN bam bam unfiltered alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF442FJZ/ 1539833007 ENCODE Processing Pipeline 01df97658c9d39ccbc82c48eb30846b7 https://www.encodeproject.org/files/ENCFF920RYN/@@download/ENCFF920RYN.bam released s3://encode-public/2017/02/08/aff6724a-60dc-40eb-81b6-f9a7c7c32119/ENCFF920RYN.bam ENCODE3 GRCh38 archived low read length ENCFF662VGN bam bam unfiltered alignments hg19 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF442FJZ/ 1531831916 ENCODE Processing Pipeline 549306ea4e001eee3490d5ffb8db7bcf https://www.encodeproject.org/files/ENCFF662VGN/@@download/ENCFF662VGN.bam released s3://encode-public/2017/02/08/5a09906c-fc63-48de-8854-236f252f0f00/ENCFF662VGN.bam ENCODE3 hg19 archived low read length ENCFF324YZM bam bam unfiltered alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF269ATE/ 1695014025 ENCODE Processing Pipeline fd98d4baa7d5fd20151bcbdba1400d10 https://www.encodeproject.org/files/ENCFF324YZM/@@download/ENCFF324YZM.bam released s3://encode-public/2017/02/08/45eb340e-9f98-4550-90c3-953f359ceb67/ENCFF324YZM.bam ENCODE3 GRCh38 archived low read length ENCFF079JOF bam bam unfiltered alignments hg19 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF269ATE/ 1686860782 ENCODE Processing Pipeline ff885c3b3f8e766bfe6177c82cde2821 https://www.encodeproject.org/files/ENCFF079JOF/@@download/ENCFF079JOF.bam released s3://encode-public/2017/02/08/f9bc9737-4eae-4422-a7b3-9992c131f0f2/ENCFF079JOF.bam ENCODE3 hg19 archived low read length ENCFF060VZM bam bam alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF442FJZ/ 1163981813 ENCODE Processing Pipeline c8e9a7cd6c97ae2ca737e45f15067386 https://www.encodeproject.org/files/ENCFF060VZM/@@download/ENCFF060VZM.bam released s3://encode-public/2017/02/08/8309e009-0658-416d-b798-7a69a54abb7f/ENCFF060VZM.bam ENCODE3 GRCh38 archived low read length ENCFF809MGU bam bam alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF269ATE/ 1256952562 ENCODE Processing Pipeline 80a74f7044e2a39d379ffe630fa4cd8d https://www.encodeproject.org/files/ENCFF809MGU/@@download/ENCFF809MGU.bam released s3://encode-public/2017/02/08/7b74f733-5988-44d3-b251-c5d7137becca/ENCFF809MGU.bam ENCODE3 GRCh38 archived low read length ENCFF500AAN bam bam alignments hg19 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF442FJZ/ 1164743134 ENCODE Processing Pipeline 234d0912186e45e26a94916ccb3c1751 https://www.encodeproject.org/files/ENCFF500AAN/@@download/ENCFF500AAN.bam released s3://encode-public/2017/02/08/7366dda1-265b-408e-9697-a62c425dfadb/ENCFF500AAN.bam ENCODE3 hg19 archived low read length ENCFF342ZZN bam bam alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF269ATE/ 1316593080 ENCODE Processing Pipeline ef3f1f7c4659749f147119bedaa4c17a https://www.encodeproject.org/files/ENCFF342ZZN/@@download/ENCFF342ZZN.bam released s3://encode-public/2020/10/27/7d370f88-39a9-49a1-97bd-795c4e8a6778/ENCFF342ZZN.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF881JKI bam bam alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF442FJZ/ 1209494527 ENCODE Processing Pipeline 9e7cf7763032eb7165f5f4ff0de52b94 https://www.encodeproject.org/files/ENCFF881JKI/@@download/ENCFF881JKI.bam released s3://encode-public/2020/10/27/838eebf2-f5dc-41cc-97af-66cce388eba0/ENCFF881JKI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF751JIE bam bam unfiltered alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF442FJZ/ 1520468097 ENCODE Processing Pipeline 85c44b0fc8d6ea7b6bac7e3d012ee64b https://www.encodeproject.org/files/ENCFF751JIE/@@download/ENCFF751JIE.bam released s3://encode-public/2020/10/27/c01e780c-e051-48bf-bade-8588cd9ae3e7/ENCFF751JIE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF133XRJ bam bam unfiltered alignments GRCh38 ENCSR352VNP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF269ATE/ 1673851074 ENCODE Processing Pipeline 730b2555276fdd4fc3bc0f87d56ec874 https://www.encodeproject.org/files/ENCFF133XRJ/@@download/ENCFF133XRJ.bam released s3://encode-public/2020/10/27/0956cf17-e4a6-4a6c-ae15-78d3499a48cc/ENCFF133XRJ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF646DHK fastq fastq reads ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF973DKC/ 4495461868 Michael Snyder, Stanford a59ff8ba732c39f87424e2fc5a80778f SRA:SRR6214216 https://www.encodeproject.org/files/ENCFF646DHK/@@download/ENCFF646DHK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/02/ac3b4f83-ea48-4443-86be-d84e148c2734/ENCFF646DHK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF973DKC fastq fastq reads ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF646DHK/ 4752146130 Michael Snyder, Stanford 78a51aadd1e804340db5b81b6223830e SRA:SRR6214216 https://www.encodeproject.org/files/ENCFF973DKC/@@download/ENCFF973DKC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/02/7a08068f-3efd-4622-9696-cdadc2d3f1a7/ENCFF973DKC.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF823RZC bam bam unfiltered alignments GRCh38 ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF973DKC/, /files/ENCFF643CGH/, /files/ENCFF646DHK/ 8157012542 ENCODE Processing Pipeline 68bbcb92b3ca50a413b65ac5c8a568db https://www.encodeproject.org/files/ENCFF823RZC/@@download/ENCFF823RZC.bam released s3://encode-public/2016/12/07/a7399169-7493-438a-9bd1-a18b5b0b36c9/ENCFF823RZC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF253TZT bam bam unfiltered alignments hg19 ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF973DKC/, /files/ENCFF807MUK/, /files/ENCFF646DHK/ 8152817706 ENCODE Processing Pipeline 5f86b9bcdc14ff56175bb62dc52db848 https://www.encodeproject.org/files/ENCFF253TZT/@@download/ENCFF253TZT.bam released s3://encode-public/2016/12/07/39bd2e96-59b7-4991-896f-121e779463fd/ENCFF253TZT.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF278DTC bam bam alignments GRCh38 ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF973DKC/, /files/ENCFF643CGH/, /files/ENCFF646DHK/ 5717056072 ENCODE Processing Pipeline 98d1bd72f3f74d578d4c74d67ba0f77d https://www.encodeproject.org/files/ENCFF278DTC/@@download/ENCFF278DTC.bam released s3://encode-public/2016/12/07/52714db1-022a-40fb-953d-5d7d7e67f09f/ENCFF278DTC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF106RXX bam bam alignments hg19 ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 101 /files/ENCFF973DKC/, /files/ENCFF807MUK/, /files/ENCFF646DHK/ 5706090666 ENCODE Processing Pipeline 218481f6f5f8d9131fba115bf6813fe4 https://www.encodeproject.org/files/ENCFF106RXX/@@download/ENCFF106RXX.bam released s3://encode-public/2016/12/07/44f813bc-6887-4a92-a06f-4f9ae71c5095/ENCFF106RXX.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF694ZUH bam bam alignments GRCh38 ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF646DHK/, /files/ENCFF973DKC/ 5593324255 ENCODE Processing Pipeline c9d0282d4eb312f13dfe8c0f540cdfb5 https://www.encodeproject.org/files/ENCFF694ZUH/@@download/ENCFF694ZUH.bam released s3://encode-public/2020/06/02/ecbd82d3-5f1a-48db-a74a-cbf2b6b71896/ENCFF694ZUH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF041IYV bam bam unfiltered alignments GRCh38 ENCSR747VNS Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001159 sigmoid colon tissue Homo sapiens DNA 2016-12-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF646DHK/, /files/ENCFF973DKC/ 8177881810 ENCODE Processing Pipeline 15452c4dd12fd9aa61ef9a262ea0030f https://www.encodeproject.org/files/ENCFF041IYV/@@download/ENCFF041IYV.bam released s3://encode-public/2020/06/02/6778541b-776a-4d35-bb39-9c5f1b6eb4c1/ENCFF041IYV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF599AHA fastq fastq reads ENCSR524BHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 single-ended 3042008196 Richard Myers, HAIB 29cfded158d4bb63503485db2b00ae53 SRA:SRR14105428 https://www.encodeproject.org/files/ENCFF599AHA/@@download/ENCFF599AHA.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/05/27/a2d4bb6e-32e4-4747-8cb1-db8909ec86f0/ENCFF599AHA.fastq.gz mild to moderate bottlenecking ENCFF526WYE bam bam unfiltered alignments GRCh38 ENCSR524BHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF599AHA/, /files/ENCFF110MCL/ 3061746460 ENCODE Processing Pipeline 9c4781f20105aecaccdd3d97c88d2e32 https://www.encodeproject.org/files/ENCFF526WYE/@@download/ENCFF526WYE.bam released s3://encode-public/2020/08/12/49d88c31-7366-4341-bbc4-57c77ab6a4c2/ENCFF526WYE.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF679MKI bam bam alignments GRCh38 ENCSR524BHN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-08-14 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF599AHA/, /files/ENCFF110MCL/ 1732102000 ENCODE Processing Pipeline d923e08a8f6b9f274b2041e4fae353de https://www.encodeproject.org/files/ENCFF679MKI/@@download/ENCFF679MKI.bam released s3://encode-public/2020/08/12/bc58357a-8188-4ff4-a66f-835fb419dcc8/ENCFF679MKI.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking ENCFF172JDP fastq fastq reads ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF154SYW/ 4112196397 Michael Snyder, Stanford e7acde7e91e2e086fee52522dd4ff2a7 SRA:SRR5111476 https://www.encodeproject.org/files/ENCFF172JDP/@@download/ENCFF172JDP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/ebe6058f-8764-4b81-8f52-feb2ead52b45/ENCFF172JDP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF154SYW fastq fastq reads ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF172JDP/ 3801927965 Michael Snyder, Stanford 9f4ffa372683955eceb2e742a3ecd5d9 SRA:SRR5111476 https://www.encodeproject.org/files/ENCFF154SYW/@@download/ENCFF154SYW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/08/01/d004e174-11e6-41bb-a11d-70afe90cf095/ENCFF154SYW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF719PXX bam bam unfiltered alignments GRCh38 ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF172JDP/, /files/ENCFF154SYW/ 7821750141 ENCODE Processing Pipeline 6b7708c194c4e86182be528a1c058fd2 https://www.encodeproject.org/files/ENCFF719PXX/@@download/ENCFF719PXX.bam released s3://encode-public/2016/08/13/81b64fcf-1102-426c-8509-6b6bee396fde/ENCFF719PXX.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF712WCF bam bam alignments GRCh38 ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF172JDP/, /files/ENCFF154SYW/ 6389550988 ENCODE Processing Pipeline 4b5c22be8d3a1214bef89acd2d001921 https://www.encodeproject.org/files/ENCFF712WCF/@@download/ENCFF712WCF.bam released s3://encode-public/2016/08/13/401fcf5f-76a0-4750-aa4f-193f79da2235/ENCFF712WCF.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF944AKG bam bam unfiltered alignments hg19 ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF172JDP/, /files/ENCFF154SYW/ 7808678705 ENCODE Processing Pipeline 34e0c2757e917d598f33f0fb6325a454 https://www.encodeproject.org/files/ENCFF944AKG/@@download/ENCFF944AKG.bam released s3://encode-public/2016/09/11/e5aaa668-31d4-4f0e-a40b-9b35fc3bcf5c/ENCFF944AKG.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF683AIZ bam bam alignments hg19 ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF172JDP/, /files/ENCFF154SYW/ 6384352695 ENCODE Processing Pipeline 88f396d747506a8c793516247df68ed3 https://www.encodeproject.org/files/ENCFF683AIZ/@@download/ENCFF683AIZ.bam released s3://encode-public/2016/09/11/edfb2aa5-3ae5-4e31-ba8a-7f54df4eba04/ENCFF683AIZ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF582ZFW bam bam unfiltered alignments GRCh38 ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF154SYW/, /files/ENCFF172JDP/ 7945830369 ENCODE Processing Pipeline d65437e4a21608ca3c83cfbf6da5b4e2 https://www.encodeproject.org/files/ENCFF582ZFW/@@download/ENCFF582ZFW.bam released s3://encode-public/2020/06/02/8f76b69e-5021-4a8c-a9bf-705f66d7e0f5/ENCFF582ZFW.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF031UZD bam bam alignments GRCh38 ENCSR342AGU Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1081'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79149/'], '@type': ['Target', 'Item'], 'name': 'ZSCAN5A-human', 'label': 'ZSCAN5A', '@id': '/targets/ZSCAN5A-human/', 'title': 'ZSCAN5A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6493fa28-189b-4037-88d3-b6427d4d6ac1', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF154SYW/, /files/ENCFF172JDP/ 6471408106 ENCODE Processing Pipeline c796fa8fbc101bba72e6e56065a1da7e https://www.encodeproject.org/files/ENCFF031UZD/@@download/ENCFF031UZD.bam released s3://encode-public/2020/06/02/7febffac-f772-4f2c-b1b7-885319f09dc0/ENCFF031UZD.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF062HQQ fastq fastq reads ENCSR685DWE Control ChIP-seq /fly-donors/ENCDO272FZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34303/'], '@type': ['Target', 'Item'], 'name': 'CG13123-dmelanogaster', 'label': 'CG13123', '@id': '/targets/CG13123-dmelanogaster/', 'title': 'CG13123 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8c296ed0-ec75-4f0e-876c-1e035255ea17', 'status': 'released'} dm3 2L 9781137 9801425 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1024806494 Kevin White, UChicago 117bee66620517b1e9898c23dd338ccf https://www.encodeproject.org/files/ENCFF062HQQ/@@download/ENCFF062HQQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/03/d631dff2-5647-42ee-b13f-5133fa23254d/ENCFF062HQQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF557QRY bam bam alignments dm3 ENCSR685DWE Control ChIP-seq /fly-donors/ENCDO272FZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34303/'], '@type': ['Target', 'Item'], 'name': 'CG13123-dmelanogaster', 'label': 'CG13123', '@id': '/targets/CG13123-dmelanogaster/', 'title': 'CG13123 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8c296ed0-ec75-4f0e-876c-1e035255ea17', 'status': 'released'} dm3 2L 9781137 9801425 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF062HQQ/, /files/ENCFF059UHX/ 1236672154 Kevin White, UChicago 24f2eb0ece01bd2dfcb180b84b5af862 https://www.encodeproject.org/files/ENCFF557QRY/@@download/ENCFF557QRY.bam released s3://encode-public/2016/08/04/56cf7413-4c67-4a41-a0fc-148ac6f80cf9/ENCFF557QRY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF231FMS bam bam alignments dm6 ENCSR685DWE Control ChIP-seq /fly-donors/ENCDO272FZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34303/'], '@type': ['Target', 'Item'], 'name': 'CG13123-dmelanogaster', 'label': 'CG13123', '@id': '/targets/CG13123-dmelanogaster/', 'title': 'CG13123 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8c296ed0-ec75-4f0e-876c-1e035255ea17', 'status': 'released'} dm3 2L 9781137 9801425 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF062HQQ/, /files/ENCFF479RCH/ 1233309250 Kevin White, UChicago 7869604d24bdb109f97f8f32e6d87ceb https://www.encodeproject.org/files/ENCFF231FMS/@@download/ENCFF231FMS.bam released s3://encode-public/2016/08/04/e0958696-fc91-46b2-b1cc-ca174345da08/ENCFF231FMS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF068ZML bigWig bigWig read-depth normalized signal dm3 ENCSR685DWE Control ChIP-seq /fly-donors/ENCDO272FZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34303/'], '@type': ['Target', 'Item'], 'name': 'CG13123-dmelanogaster', 'label': 'CG13123', '@id': '/targets/CG13123-dmelanogaster/', 'title': 'CG13123 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8c296ed0-ec75-4f0e-876c-1e035255ea17', 'status': 'released'} dm3 2L 9781137 9801425 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF557QRY/ 15425817 Kevin White, UChicago eff3dd5d8ea106eda0e3c09914dd807d https://www.encodeproject.org/files/ENCFF068ZML/@@download/ENCFF068ZML.bigWig released s3://encode-public/2016/08/04/33600b14-c887-4f00-a68f-dfbbd6014479/ENCFF068ZML.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF801IVH bigWig bigWig signal of unique reads dm3 ENCSR685DWE Control ChIP-seq /fly-donors/ENCDO272FZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34303/'], '@type': ['Target', 'Item'], 'name': 'CG13123-dmelanogaster', 'label': 'CG13123', '@id': '/targets/CG13123-dmelanogaster/', 'title': 'CG13123 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8c296ed0-ec75-4f0e-876c-1e035255ea17', 'status': 'released'} dm3 2L 9781137 9801425 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF557QRY/ 15403608 Kevin White, UChicago 44bab9e07c503ed712b5aa75a3580641 https://www.encodeproject.org/files/ENCFF801IVH/@@download/ENCFF801IVH.bigWig released s3://encode-public/2016/08/04/57c8a8ba-d039-4bf8-8243-9b74bc750908/ENCFF801IVH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF618GVG bigWig bigWig read-depth normalized signal dm6 ENCSR685DWE Control ChIP-seq /fly-donors/ENCDO272FZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34303/'], '@type': ['Target', 'Item'], 'name': 'CG13123-dmelanogaster', 'label': 'CG13123', '@id': '/targets/CG13123-dmelanogaster/', 'title': 'CG13123 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8c296ed0-ec75-4f0e-876c-1e035255ea17', 'status': 'released'} dm3 2L 9781137 9801425 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF231FMS/ 17503358 Kevin White, UChicago cfad2196efcda04d50ecf7076b05fa99 https://www.encodeproject.org/files/ENCFF618GVG/@@download/ENCFF618GVG.bigWig released s3://encode-public/2016/08/04/75352b5a-ec4f-4941-ab63-31f14629fb68/ENCFF618GVG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF504LXU bigWig bigWig signal of unique reads dm6 ENCSR685DWE Control ChIP-seq /fly-donors/ENCDO272FZE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34303/'], '@type': ['Target', 'Item'], 'name': 'CG13123-dmelanogaster', 'label': 'CG13123', '@id': '/targets/CG13123-dmelanogaster/', 'title': 'CG13123 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8c296ed0-ec75-4f0e-876c-1e035255ea17', 'status': 'released'} dm3 2L 9781137 9801425 DNA 2016-09-29 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF231FMS/ 17474699 Kevin White, UChicago fa43288ac84d51e0d423ffc6fe226f87 https://www.encodeproject.org/files/ENCFF504LXU/@@download/ENCFF504LXU.bigWig released s3://encode-public/2016/08/04/82d6f82b-0237-4737-b01a-2ec095f7240d/ENCFF504LXU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF227HLR fastq fastq reads ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 164869905 Michael Snyder, Stanford 16f31eb94e8225ccb362961926cf21b6 https://www.encodeproject.org/files/ENCFF227HLR/@@download/ENCFF227HLR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/e70d8bc7-0e8e-4b1d-8055-9aca8f1a2710/ENCFF227HLR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF817VAP fastq fastq reads ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 197217625 Michael Snyder, Stanford 874bcf03f10792c4480ae91f91021beb https://www.encodeproject.org/files/ENCFF817VAP/@@download/ENCFF817VAP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/39abb1e0-b1da-4bcb-849c-d244234f3e2d/ENCFF817VAP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF164TVZ bam bam alignments ce10 ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF227HLR/, /files/ENCFF817VAP/, /files/ENCFF987UMF/ 460661044 Kevin White, UChicago d45e26a81c933a26c17f9ad8a7c2bc47 https://www.encodeproject.org/files/ENCFF164TVZ/@@download/ENCFF164TVZ.bam released s3://encode-public/2017/04/27/a349f306-7b58-4610-b577-1ec551121f86/ENCFF164TVZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF483VPG bam bam alignments ce11 ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF227HLR/, /files/ENCFF817VAP/, /files/ENCFF586MOL/ 461126944 Kevin White, UChicago b43c2763c01d221346c75bc0b5c19038 https://www.encodeproject.org/files/ENCFF483VPG/@@download/ENCFF483VPG.bam released s3://encode-public/2017/04/27/398a4a22-e831-4dd5-b409-1f33ff9d9c64/ENCFF483VPG.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF933EST bigWig bigWig read-depth normalized signal ce10 ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF164TVZ/ 10003896 Kevin White, UChicago 16b1ac6f239db699555c491476034aa2 https://www.encodeproject.org/files/ENCFF933EST/@@download/ENCFF933EST.bigWig released s3://encode-public/2017/04/29/42a8e050-42d7-4ff0-958b-ac73c3f0ffed/ENCFF933EST.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF398HJI bigWig bigWig signal of unique reads ce10 ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF164TVZ/ 10047155 Kevin White, UChicago 3aa8d20a4ec4f76ade0fcfe34afb02f3 https://www.encodeproject.org/files/ENCFF398HJI/@@download/ENCFF398HJI.bigWig released s3://encode-public/2017/04/29/bb57efaf-2561-44f1-8851-ff30a51f1e7d/ENCFF398HJI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF142HXY bigWig bigWig read-depth normalized signal ce11 ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF483VPG/ 9996246 Kevin White, UChicago fa39d70a049429c5eaa53564d6812a08 https://www.encodeproject.org/files/ENCFF142HXY/@@download/ENCFF142HXY.bigWig released s3://encode-public/2017/04/29/a463163c-4ff6-411c-976d-a49ea6445669/ENCFF142HXY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF094KYO bigWig bigWig signal of unique reads ce11 ENCSR843CSI Control ChIP-seq /worm-donors/ENCDO998YXA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/182276/'], '@type': ['Target', 'Item'], 'name': 'nhr-76-celegans', 'label': 'nhr-76', '@id': '/targets/nhr-76-celegans/', 'title': 'nhr-76 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '22e10780-ee7a-401c-a0d6-07d1acbd320b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF483VPG/ 10043092 Kevin White, UChicago de7f5573733d79606b846d72a2979df4 https://www.encodeproject.org/files/ENCFF094KYO/@@download/ENCFF094KYO.bigWig released s3://encode-public/2017/04/29/f296b1ca-427f-456e-824f-be303f6392ef/ENCFF094KYO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF918NXF fastq fastq reads ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 108906748 Michael Snyder, Stanford d7c0af0af84dde872f553e5e0a376020 https://www.encodeproject.org/files/ENCFF918NXF/@@download/ENCFF918NXF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/c37d160a-7980-459a-9ee9-3c7488e5f817/ENCFF918NXF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF964HDK fastq fastq reads ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 99785588 Michael Snyder, Stanford 59b98239d5dbf35d4578b180883476cc https://www.encodeproject.org/files/ENCFF964HDK/@@download/ENCFF964HDK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/298eeb3c-3db4-43f9-80e0-4ba3fb49f7ec/ENCFF964HDK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF869VSX bam bam alignments ce10 ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF918NXF/, /files/ENCFF964HDK/, /files/ENCFF987UMF/ 263998672 Kevin White, UChicago 8fe19607d9642b7b91894ef6f095aa58 https://www.encodeproject.org/files/ENCFF869VSX/@@download/ENCFF869VSX.bam released s3://encode-public/2017/04/27/e7163d39-a0bf-4d41-a802-d41e1cffa012/ENCFF869VSX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF401VOI bam bam alignments ce11 ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF918NXF/, /files/ENCFF964HDK/, /files/ENCFF586MOL/ 264252222 Kevin White, UChicago d837b54f6f945388a8975ccbb25ff8ed https://www.encodeproject.org/files/ENCFF401VOI/@@download/ENCFF401VOI.bam released s3://encode-public/2017/04/27/d41250b5-50e9-4263-8dfd-7a957e3dd0a1/ENCFF401VOI.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF920ZTD bigWig bigWig read-depth normalized signal ce10 ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF869VSX/ 10039171 Kevin White, UChicago c2ff59dfd0b933cc9faef52ba55ceec1 https://www.encodeproject.org/files/ENCFF920ZTD/@@download/ENCFF920ZTD.bigWig released s3://encode-public/2017/04/29/149a4fc2-d41c-44fc-a9e6-9fe56c5ea7f1/ENCFF920ZTD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF503GGY bigWig bigWig signal of unique reads ce10 ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF869VSX/ 10017023 Kevin White, UChicago e989f833d7121136ac0d9ada87d33b94 https://www.encodeproject.org/files/ENCFF503GGY/@@download/ENCFF503GGY.bigWig released s3://encode-public/2017/04/29/2f4efde5-8b18-4906-bb45-7c3e05e7c119/ENCFF503GGY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF311BDT bigWig bigWig read-depth normalized signal ce11 ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF401VOI/ 10035720 Kevin White, UChicago dee4ad8f6cf7386e30466952e1ae538c https://www.encodeproject.org/files/ENCFF311BDT/@@download/ENCFF311BDT.bigWig released s3://encode-public/2017/04/29/c1ab07b2-fdac-4a13-add2-b7f122f2881b/ENCFF311BDT.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF467ODF bigWig bigWig signal of unique reads ce11 ENCSR001UTJ Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF401VOI/ 10013388 Kevin White, UChicago d51d1f06922a3588605d3334b6cc3054 https://www.encodeproject.org/files/ENCFF467ODF/@@download/ENCFF467ODF.bigWig released s3://encode-public/2017/04/29/b6e91b9d-cfa4-4099-a8bc-4a4db510a17d/ENCFF467ODF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF914MTW fastq fastq reads ENCSR300JHR Control ChIP-seq /fly-donors/ENCDO184WOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41423/'], '@type': ['Target', 'Item'], 'name': 'l(3)neo38-dmelanogaster', 'label': 'l(3)neo38', '@id': '/targets/l(3)neo38-dmelanogaster/', 'title': 'l(3)neo38 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '4d6f4ecb-0b96-47f8-b3fd-c8f447f727f9', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 923598895 Kevin White, UChicago a5f6ca2a425b0020d559d8b4677d665f https://www.encodeproject.org/files/ENCFF914MTW/@@download/ENCFF914MTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/d7577a56-f3ed-441e-b68d-23568744d9e4/ENCFF914MTW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF593XHN bam bam alignments dm3 ENCSR300JHR Control ChIP-seq /fly-donors/ENCDO184WOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41423/'], '@type': ['Target', 'Item'], 'name': 'l(3)neo38-dmelanogaster', 'label': 'l(3)neo38', '@id': '/targets/l(3)neo38-dmelanogaster/', 'title': 'l(3)neo38 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '4d6f4ecb-0b96-47f8-b3fd-c8f447f727f9', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF914MTW/ 1244724761 Kevin White, UChicago 698270abd24f9aa9a40b304a7fb2d011 https://www.encodeproject.org/files/ENCFF593XHN/@@download/ENCFF593XHN.bam released s3://encode-public/2017/09/12/bb5289ab-59c5-4432-befd-83dbebe0e81c/ENCFF593XHN.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF744CKH bam bam alignments dm6 ENCSR300JHR Control ChIP-seq /fly-donors/ENCDO184WOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41423/'], '@type': ['Target', 'Item'], 'name': 'l(3)neo38-dmelanogaster', 'label': 'l(3)neo38', '@id': '/targets/l(3)neo38-dmelanogaster/', 'title': 'l(3)neo38 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '4d6f4ecb-0b96-47f8-b3fd-c8f447f727f9', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF914MTW/ 1233855061 Kevin White, UChicago 3294286072543b1f3f348a219dbb598a https://www.encodeproject.org/files/ENCFF744CKH/@@download/ENCFF744CKH.bam released s3://encode-public/2017/09/13/daf4a58f-1861-4cbd-abfc-8f84a6508d2e/ENCFF744CKH.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF749BSL bigWig bigWig read-depth normalized signal dm3 ENCSR300JHR Control ChIP-seq /fly-donors/ENCDO184WOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41423/'], '@type': ['Target', 'Item'], 'name': 'l(3)neo38-dmelanogaster', 'label': 'l(3)neo38', '@id': '/targets/l(3)neo38-dmelanogaster/', 'title': 'l(3)neo38 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '4d6f4ecb-0b96-47f8-b3fd-c8f447f727f9', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF593XHN/ 15454622 Kevin White, UChicago b26984098085c54971329a75eaadc841 https://www.encodeproject.org/files/ENCFF749BSL/@@download/ENCFF749BSL.bigWig released s3://encode-public/2017/09/13/a047ab1c-d27b-483c-a877-863a0f8685e4/ENCFF749BSL.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF611LOI bigWig bigWig signal of unique reads dm3 ENCSR300JHR Control ChIP-seq /fly-donors/ENCDO184WOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41423/'], '@type': ['Target', 'Item'], 'name': 'l(3)neo38-dmelanogaster', 'label': 'l(3)neo38', '@id': '/targets/l(3)neo38-dmelanogaster/', 'title': 'l(3)neo38 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '4d6f4ecb-0b96-47f8-b3fd-c8f447f727f9', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF593XHN/ 15435082 Kevin White, UChicago 53a64d3033b956f14adfabd28afe6ca2 https://www.encodeproject.org/files/ENCFF611LOI/@@download/ENCFF611LOI.bigWig released s3://encode-public/2017/09/13/55668a6b-5d98-4d12-9dd6-7cc3758820f6/ENCFF611LOI.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF579UEO bigWig bigWig read-depth normalized signal dm6 ENCSR300JHR Control ChIP-seq /fly-donors/ENCDO184WOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41423/'], '@type': ['Target', 'Item'], 'name': 'l(3)neo38-dmelanogaster', 'label': 'l(3)neo38', '@id': '/targets/l(3)neo38-dmelanogaster/', 'title': 'l(3)neo38 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '4d6f4ecb-0b96-47f8-b3fd-c8f447f727f9', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF744CKH/ 17669275 Kevin White, UChicago f87e80de6879e18533e246b1e5c009ee https://www.encodeproject.org/files/ENCFF579UEO/@@download/ENCFF579UEO.bigWig released s3://encode-public/2017/09/14/dc1df508-3751-4f82-bd71-8dd126149243/ENCFF579UEO.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF228QGM bigWig bigWig signal of unique reads dm6 ENCSR300JHR Control ChIP-seq /fly-donors/ENCDO184WOW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41423/'], '@type': ['Target', 'Item'], 'name': 'l(3)neo38-dmelanogaster', 'label': 'l(3)neo38', '@id': '/targets/l(3)neo38-dmelanogaster/', 'title': 'l(3)neo38 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '4d6f4ecb-0b96-47f8-b3fd-c8f447f727f9', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF744CKH/ 17620258 Kevin White, UChicago f50187f7c40f369b990636d468ac32c0 https://www.encodeproject.org/files/ENCFF228QGM/@@download/ENCFF228QGM.bigWig released s3://encode-public/2017/09/14/e4144fd9-65c5-482b-8594-f7540acfc714/ENCFF228QGM.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF053FFY fastq fastq reads ENCSR470NLR Control ChIP-seq /fly-donors/ENCDO867GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39240/'], '@type': ['Target', 'Item'], 'name': 'CG7839-dmelanogaster', 'label': 'CG7839', '@id': '/targets/CG7839-dmelanogaster/', 'title': 'CG7839 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bdfcc466-505f-4ce8-a6a0-a59e0f13064f', 'status': 'released'} dm3 3L 11006690 11088725 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1977361104 Kevin White, UChicago 8d065791141cafd874fad91fb84a3b7a https://www.encodeproject.org/files/ENCFF053FFY/@@download/ENCFF053FFY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/07/304aafba-e171-4619-a2ed-f4f377c4c2d1/ENCFF053FFY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF462ROY bam bam alignments dm6 ENCSR470NLR Control ChIP-seq /fly-donors/ENCDO867GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39240/'], '@type': ['Target', 'Item'], 'name': 'CG7839-dmelanogaster', 'label': 'CG7839', '@id': '/targets/CG7839-dmelanogaster/', 'title': 'CG7839 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bdfcc466-505f-4ce8-a6a0-a59e0f13064f', 'status': 'released'} dm3 3L 11006690 11088725 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF053FFY/, /files/ENCFF479RCH/ 2710293203 Kevin White, UChicago bfeb9bfa69acb08a87917c35f66cd5d1 https://www.encodeproject.org/files/ENCFF462ROY/@@download/ENCFF462ROY.bam released s3://encode-public/2018/12/07/d5ce7d16-b35d-47bd-a7e2-6d459a37bdfe/ENCFF462ROY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF019YIA bigWig bigWig read-depth normalized signal dm6 ENCSR470NLR Control ChIP-seq /fly-donors/ENCDO867GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39240/'], '@type': ['Target', 'Item'], 'name': 'CG7839-dmelanogaster', 'label': 'CG7839', '@id': '/targets/CG7839-dmelanogaster/', 'title': 'CG7839 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bdfcc466-505f-4ce8-a6a0-a59e0f13064f', 'status': 'released'} dm3 3L 11006690 11088725 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF462ROY/ 17985201 Kevin White, UChicago 92aa1ac3a77da9f120e5f69f7b9f3440 https://www.encodeproject.org/files/ENCFF019YIA/@@download/ENCFF019YIA.bigWig released s3://encode-public/2018/12/10/a2611c2a-9dc2-4508-94ff-b6c6d986a8b8/ENCFF019YIA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF409LMR bigWig bigWig signal of unique reads dm6 ENCSR470NLR Control ChIP-seq /fly-donors/ENCDO867GTV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39240/'], '@type': ['Target', 'Item'], 'name': 'CG7839-dmelanogaster', 'label': 'CG7839', '@id': '/targets/CG7839-dmelanogaster/', 'title': 'CG7839 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'bdfcc466-505f-4ce8-a6a0-a59e0f13064f', 'status': 'released'} dm3 3L 11006690 11088725 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF462ROY/ 17902985 Kevin White, UChicago 33abce59f4672208b190211512fcb413 https://www.encodeproject.org/files/ENCFF409LMR/@@download/ENCFF409LMR.bigWig released s3://encode-public/2018/12/10/a4b33a77-f68e-4d76-afe4-dc8c956910fa/ENCFF409LMR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF318CCF bam bam unfiltered alignments hg19 ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF132ASO/, /files/ENCFF807MUK/, /files/ENCFF650GDL/ 6719342661 ENCODE Processing Pipeline 0c2370e2c1e78146d72a9f7befc76cdd https://www.encodeproject.org/files/ENCFF318CCF/@@download/ENCFF318CCF.bam released s3://encode-public/2018/02/22/5af942c7-0354-41b4-89d8-6c13f6afa669/ENCFF318CCF.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF650GDL fastq fastq reads ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 1 /files/ENCFF132ASO/ 3079826472 Michael Snyder, Stanford 6641913fd2ec8a666ce404c97c253e6b SRA:SRR5111575 https://www.encodeproject.org/files/ENCFF650GDL/@@download/ENCFF650GDL.fastq.gz Illumina HiSeq 2000 /files/ENCFF258YTR/, /files/ENCFF910GLH/ released s3://encode-public/2016/04/01/2f6ad3b9-4d85-4b9a-b541-33ee2f9c43c0/ENCFF650GDL.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF132ASO fastq fastq reads ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 paired-ended 2 /files/ENCFF650GDL/ 3068793946 Michael Snyder, Stanford 97b1038c658bc6501ef083762300c461 SRA:SRR5111575 https://www.encodeproject.org/files/ENCFF132ASO/@@download/ENCFF132ASO.fastq.gz Illumina HiSeq 2000 /files/ENCFF258YTR/, /files/ENCFF910GLH/ released s3://encode-public/2016/04/01/729015c3-22be-4774-91be-ca69c786ba6d/ENCFF132ASO.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF587NFZ bam bam alignments hg19 ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF132ASO/, /files/ENCFF807MUK/, /files/ENCFF650GDL/ 5384654353 ENCODE Processing Pipeline b952860296680708ac64efd27197ad3a https://www.encodeproject.org/files/ENCFF587NFZ/@@download/ENCFF587NFZ.bam released s3://encode-public/2016/05/21/de409284-d51a-4573-a75f-37505ddb759b/ENCFF587NFZ.bam ENCODE3 hg19 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF129RAC bam bam unfiltered alignments GRCh38 ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF132ASO/, /files/ENCFF643CGH/, /files/ENCFF650GDL/ 6730725218 ENCODE Processing Pipeline 948a6ee0976af8b45c20b4c34dbb356a https://www.encodeproject.org/files/ENCFF129RAC/@@download/ENCFF129RAC.bam released s3://encode-public/2016/10/29/0322a2ab-060e-4fb7-aed0-188b8a6592b1/ENCFF129RAC.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF306LVM bam bam alignments GRCh38 ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 101 /files/ENCFF132ASO/, /files/ENCFF643CGH/, /files/ENCFF650GDL/ 5390578293 ENCODE Processing Pipeline 12b9c2ab9c725206402aa1e31c363ee0 https://www.encodeproject.org/files/ENCFF306LVM/@@download/ENCFF306LVM.bam released s3://encode-public/2016/10/29/640e5760-1e6f-471d-815a-7f0c31c5875a/ENCFF306LVM.bam ENCODE3 GRCh38 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF653DLN bam bam unfiltered alignments GRCh38 ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF650GDL/, /files/ENCFF132ASO/ 6734220822 ENCODE Processing Pipeline 0bb0b1b4528405488a4053ece9a46e63 https://www.encodeproject.org/files/ENCFF653DLN/@@download/ENCFF653DLN.bam released s3://encode-public/2020/06/02/a7f95b27-3300-4e9c-9fca-58398f775301/ENCFF653DLN.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF103WFE bam bam alignments GRCh38 ENCSR412HJH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1823'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4209/'], '@type': ['Target', 'Item'], 'name': 'MEF2D-human', 'label': 'MEF2D', '@id': '/targets/MEF2D-human/', 'title': 'MEF2D (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6ae48ba8-3f5f-4990-a4ee-e6f8f7ce6ec3', 'status': 'released'} DNA 2016-08-03 ENCODE 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF650GDL/, /files/ENCFF132ASO/ 5325818866 ENCODE Processing Pipeline dd38ef84a0df39eaa4323b8bf160c5d3 https://www.encodeproject.org/files/ENCFF103WFE/@@download/ENCFF103WFE.bam released s3://encode-public/2020/06/02/2068b853-0e7d-4b4a-bf77-290a9795c79a/ENCFF103WFE.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization, missing genetic modification characterization ENCFF937DZQ fastq fastq reads ENCSR510MWR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1850'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3204/'], '@type': ['Target', 'Item'], 'name': 'HOXA7-human', 'label': 'HOXA7', '@id': '/targets/HOXA7-human/', 'title': 'HOXA7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cefd0eac-7387-4971-88c8-7c0f58c2c6f6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF618NOD/ 1295838162 Michael Snyder, Stanford ce3e185cca726da01d44050cdcc413c0 SRA:SRR14105269 https://www.encodeproject.org/files/ENCFF937DZQ/@@download/ENCFF937DZQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/932e7df0-46d4-4b09-afad-20b4dc3c93c5/ENCFF937DZQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF618NOD fastq fastq reads ENCSR510MWR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1850'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3204/'], '@type': ['Target', 'Item'], 'name': 'HOXA7-human', 'label': 'HOXA7', '@id': '/targets/HOXA7-human/', 'title': 'HOXA7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cefd0eac-7387-4971-88c8-7c0f58c2c6f6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF937DZQ/ 1509327530 Michael Snyder, Stanford 562034179d0789b6165dff7ff84184b7 SRA:SRR14105269 https://www.encodeproject.org/files/ENCFF618NOD/@@download/ENCFF618NOD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/c86eb59e-2322-4460-9595-0ac8c6cffe48/ENCFF618NOD.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF631XXY fastq fastq reads ENCSR510MWR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1850'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3204/'], '@type': ['Target', 'Item'], 'name': 'HOXA7-human', 'label': 'HOXA7', '@id': '/targets/HOXA7-human/', 'title': 'HOXA7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cefd0eac-7387-4971-88c8-7c0f58c2c6f6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF440BNY/ 1964127478 Michael Snyder, Stanford 51b54feacb679e1bd9e2c8fa854586c1 SRA:SRR14105270 https://www.encodeproject.org/files/ENCFF631XXY/@@download/ENCFF631XXY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/05/12/4294ee8f-eac9-4270-8036-fcd382338fb5/ENCFF631XXY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF440BNY fastq fastq reads ENCSR510MWR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1850'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3204/'], '@type': ['Target', 'Item'], 'name': 'HOXA7-human', 'label': 'HOXA7', '@id': '/targets/HOXA7-human/', 'title': 'HOXA7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cefd0eac-7387-4971-88c8-7c0f58c2c6f6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF631XXY/ 2123696711 Michael Snyder, Stanford 05e5531623ccd02bcfd6c864faed1cdc SRA:SRR14105270 https://www.encodeproject.org/files/ENCFF440BNY/@@download/ENCFF440BNY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/05/12/30a09c67-deaa-4868-b3e5-e96e116fa295/ENCFF440BNY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF142BNW bam bam unfiltered alignments GRCh38 ENCSR510MWR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1850'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3204/'], '@type': ['Target', 'Item'], 'name': 'HOXA7-human', 'label': 'HOXA7', '@id': '/targets/HOXA7-human/', 'title': 'HOXA7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cefd0eac-7387-4971-88c8-7c0f58c2c6f6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF937DZQ/, /files/ENCFF631XXY/, /files/ENCFF440BNY/, /files/ENCFF618NOD/ 6044045295 ENCODE Processing Pipeline 208d0e2c286d0f635062a341fca50897 https://www.encodeproject.org/files/ENCFF142BNW/@@download/ENCFF142BNW.bam released s3://encode-public/2020/05/15/cc4db13e-9631-44e8-9b4a-24b5747cc35e/ENCFF142BNW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF962EBN bam bam alignments GRCh38 ENCSR510MWR Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1850'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3204/'], '@type': ['Target', 'Item'], 'name': 'HOXA7-human', 'label': 'HOXA7', '@id': '/targets/HOXA7-human/', 'title': 'HOXA7 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cefd0eac-7387-4971-88c8-7c0f58c2c6f6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF937DZQ/, /files/ENCFF631XXY/, /files/ENCFF440BNY/, /files/ENCFF618NOD/ 4097951103 ENCODE Processing Pipeline ec74f672597b082a0fbf4262f8a2d6c6 https://www.encodeproject.org/files/ENCFF962EBN/@@download/ENCFF962EBN.bam released s3://encode-public/2020/05/15/6d2b73f9-a734-4e48-b89d-80bcb3188574/ENCFF962EBN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF383YRN fastq fastq reads ENCSR992ICQ Control ChIP-seq /fly-donors/ENCDO844YNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/49228/'], '@type': ['Target', 'Item'], 'name': 'mod(mdg4)-dmelanogaster', 'label': 'mod(mdg4)', '@id': '/targets/mod(mdg4)-dmelanogaster/', 'title': 'mod(mdg4) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22ad3f4c-4532-4a8a-93f7-f77ccd361044', 'status': 'released'} dm3 3R 17140248 17226867 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1802314221 Kevin White, UChicago 3b7516d713f37df3c944f1ee06d566cd https://www.encodeproject.org/files/ENCFF383YRN/@@download/ENCFF383YRN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/377ec241-972d-4fd3-9238-9cd8ec749007/ENCFF383YRN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF047XSB bam bam alignments dm3 ENCSR992ICQ Control ChIP-seq /fly-donors/ENCDO844YNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/49228/'], '@type': ['Target', 'Item'], 'name': 'mod(mdg4)-dmelanogaster', 'label': 'mod(mdg4)', '@id': '/targets/mod(mdg4)-dmelanogaster/', 'title': 'mod(mdg4) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22ad3f4c-4532-4a8a-93f7-f77ccd361044', 'status': 'released'} dm3 3R 17140248 17226867 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF383YRN/ 2405172835 Kevin White, UChicago 12556acec6bd1a02cefbbae7b76672b0 https://www.encodeproject.org/files/ENCFF047XSB/@@download/ENCFF047XSB.bam released s3://encode-public/2015/08/03/e5af44b6-0011-43af-8e45-ec9e078bb3f5/ENCFF047XSB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF003GCF bigWig bigWig read-depth normalized signal dm3 ENCSR992ICQ Control ChIP-seq /fly-donors/ENCDO844YNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/49228/'], '@type': ['Target', 'Item'], 'name': 'mod(mdg4)-dmelanogaster', 'label': 'mod(mdg4)', '@id': '/targets/mod(mdg4)-dmelanogaster/', 'title': 'mod(mdg4) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22ad3f4c-4532-4a8a-93f7-f77ccd361044', 'status': 'released'} dm3 3R 17140248 17226867 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF047XSB/ 15408637 Kevin White, UChicago 2007a13985bf61f467bb8faceb13ff55 https://www.encodeproject.org/files/ENCFF003GCF/@@download/ENCFF003GCF.bigWig released s3://encode-public/2015/10/06/4eae0904-e33d-4be9-8a4d-0283a9b8de1c/ENCFF003GCF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF552YZF bigWig bigWig signal of unique reads dm3 ENCSR992ICQ Control ChIP-seq /fly-donors/ENCDO844YNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/49228/'], '@type': ['Target', 'Item'], 'name': 'mod(mdg4)-dmelanogaster', 'label': 'mod(mdg4)', '@id': '/targets/mod(mdg4)-dmelanogaster/', 'title': 'mod(mdg4) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22ad3f4c-4532-4a8a-93f7-f77ccd361044', 'status': 'released'} dm3 3R 17140248 17226867 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF047XSB/ 15416192 Kevin White, UChicago 46d468fe82237a55740438d99197421b https://www.encodeproject.org/files/ENCFF552YZF/@@download/ENCFF552YZF.bigWig released s3://encode-public/2015/10/06/68298ed4-541f-4a80-b2ff-c783df7f1944/ENCFF552YZF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF509USI bam bam alignments dm6 ENCSR992ICQ Control ChIP-seq /fly-donors/ENCDO844YNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/49228/'], '@type': ['Target', 'Item'], 'name': 'mod(mdg4)-dmelanogaster', 'label': 'mod(mdg4)', '@id': '/targets/mod(mdg4)-dmelanogaster/', 'title': 'mod(mdg4) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22ad3f4c-4532-4a8a-93f7-f77ccd361044', 'status': 'released'} dm3 3R 17140248 17226867 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF383YRN/ 2395558574 Kevin White, UChicago 2c09649c590e2455d9628024a56c6133 https://www.encodeproject.org/files/ENCFF509USI/@@download/ENCFF509USI.bam released s3://encode-public/2016/04/22/a09d0fe7-ebb0-433c-9e79-73a90efc5eac/ENCFF509USI.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF922KYJ bigWig bigWig read-depth normalized signal dm6 ENCSR992ICQ Control ChIP-seq /fly-donors/ENCDO844YNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/49228/'], '@type': ['Target', 'Item'], 'name': 'mod(mdg4)-dmelanogaster', 'label': 'mod(mdg4)', '@id': '/targets/mod(mdg4)-dmelanogaster/', 'title': 'mod(mdg4) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22ad3f4c-4532-4a8a-93f7-f77ccd361044', 'status': 'released'} dm3 3R 17140248 17226867 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF509USI/ 17549223 Kevin White, UChicago 5562082628d56e7991053ced794bed3e https://www.encodeproject.org/files/ENCFF922KYJ/@@download/ENCFF922KYJ.bigWig released s3://encode-public/2016/06/21/65b49d71-a241-4c46-852c-148032eb22a4/ENCFF922KYJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF805IIT bigWig bigWig signal of unique reads dm6 ENCSR992ICQ Control ChIP-seq /fly-donors/ENCDO844YNL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/49228/'], '@type': ['Target', 'Item'], 'name': 'mod(mdg4)-dmelanogaster', 'label': 'mod(mdg4)', '@id': '/targets/mod(mdg4)-dmelanogaster/', 'title': 'mod(mdg4) (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '22ad3f4c-4532-4a8a-93f7-f77ccd361044', 'status': 'released'} dm3 3R 17140248 17226867 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF509USI/ 17545763 Kevin White, UChicago 1286225afdb52b9ad3de2291c5de62e0 https://www.encodeproject.org/files/ENCFF805IIT/@@download/ENCFF805IIT.bigWig released s3://encode-public/2016/06/21/bfbc8e7a-9913-49b2-9a85-10f0ac8ba897/ENCFF805IIT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF507HHT fastq fastq reads ENCSR849VNO Control ChIP-seq /fly-donors/ENCDO806AKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34242/'], '@type': ['Target', 'Item'], 'name': 'tai-dmelanogaster', 'label': 'tai', '@id': '/targets/tai-dmelanogaster/', 'title': 'tai (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c3e1a9b-c077-46cf-aeb4-ecde9869f234', 'status': 'released'} dm3 2L 9163318 9248192 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 50 single-ended 1513119666 Kevin White, UChicago 6d11332460ded0269dab3f5e947e0d53 https://www.encodeproject.org/files/ENCFF507HHT/@@download/ENCFF507HHT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/46c56c6e-6d33-45f8-8fea-b7db3c93dd3e/ENCFF507HHT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF090EZO bam bam alignments dm3 ENCSR849VNO Control ChIP-seq /fly-donors/ENCDO806AKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34242/'], '@type': ['Target', 'Item'], 'name': 'tai-dmelanogaster', 'label': 'tai', '@id': '/targets/tai-dmelanogaster/', 'title': 'tai (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c3e1a9b-c077-46cf-aeb4-ecde9869f234', 'status': 'released'} dm3 2L 9163318 9248192 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF507HHT/ 2036751477 Kevin White, UChicago d10b5f0cbefa950d8f72d14fdb97807b https://www.encodeproject.org/files/ENCFF090EZO/@@download/ENCFF090EZO.bam released s3://encode-public/2015/08/03/f280cbd5-f9f6-4478-8983-90f0bf41ffd1/ENCFF090EZO.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF071LMB bigWig bigWig signal of unique reads dm3 ENCSR849VNO Control ChIP-seq /fly-donors/ENCDO806AKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34242/'], '@type': ['Target', 'Item'], 'name': 'tai-dmelanogaster', 'label': 'tai', '@id': '/targets/tai-dmelanogaster/', 'title': 'tai (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c3e1a9b-c077-46cf-aeb4-ecde9869f234', 'status': 'released'} dm3 2L 9163318 9248192 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF090EZO/ 15467460 Kevin White, UChicago de4c0392daa0c22547ac7dc63de556ac https://www.encodeproject.org/files/ENCFF071LMB/@@download/ENCFF071LMB.bigWig released s3://encode-public/2015/10/06/4777b4fd-a8b3-4001-bdcf-8d5938e4a245/ENCFF071LMB.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF357SET bigWig bigWig read-depth normalized signal dm3 ENCSR849VNO Control ChIP-seq /fly-donors/ENCDO806AKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34242/'], '@type': ['Target', 'Item'], 'name': 'tai-dmelanogaster', 'label': 'tai', '@id': '/targets/tai-dmelanogaster/', 'title': 'tai (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c3e1a9b-c077-46cf-aeb4-ecde9869f234', 'status': 'released'} dm3 2L 9163318 9248192 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF090EZO/ 15466634 Kevin White, UChicago 76040376fa0ed7bd2c100e3384485c53 https://www.encodeproject.org/files/ENCFF357SET/@@download/ENCFF357SET.bigWig released s3://encode-public/2015/10/06/c7b7f70f-5d45-4c67-8eec-cf0376929848/ENCFF357SET.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF068UMU bam bam alignments dm6 ENCSR849VNO Control ChIP-seq /fly-donors/ENCDO806AKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34242/'], '@type': ['Target', 'Item'], 'name': 'tai-dmelanogaster', 'label': 'tai', '@id': '/targets/tai-dmelanogaster/', 'title': 'tai (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c3e1a9b-c077-46cf-aeb4-ecde9869f234', 'status': 'released'} dm3 2L 9163318 9248192 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF507HHT/ 2031762383 Kevin White, UChicago eb6994f32adaa3b94f12d4417448034f https://www.encodeproject.org/files/ENCFF068UMU/@@download/ENCFF068UMU.bam released s3://encode-public/2016/04/22/246f3057-cc67-44d0-8196-8c654d724394/ENCFF068UMU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF963CXJ bigWig bigWig signal of unique reads dm6 ENCSR849VNO Control ChIP-seq /fly-donors/ENCDO806AKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34242/'], '@type': ['Target', 'Item'], 'name': 'tai-dmelanogaster', 'label': 'tai', '@id': '/targets/tai-dmelanogaster/', 'title': 'tai (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c3e1a9b-c077-46cf-aeb4-ecde9869f234', 'status': 'released'} dm3 2L 9163318 9248192 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF068UMU/ 17572677 Kevin White, UChicago 17f807f1c05e57e80a91321f7c21cfbf https://www.encodeproject.org/files/ENCFF963CXJ/@@download/ENCFF963CXJ.bigWig released s3://encode-public/2016/06/20/90cc7687-d39f-48ff-baf7-23080be9b2cf/ENCFF963CXJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF699RNH bigWig bigWig read-depth normalized signal dm6 ENCSR849VNO Control ChIP-seq /fly-donors/ENCDO806AKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34242/'], '@type': ['Target', 'Item'], 'name': 'tai-dmelanogaster', 'label': 'tai', '@id': '/targets/tai-dmelanogaster/', 'title': 'tai (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '4c3e1a9b-c077-46cf-aeb4-ecde9869f234', 'status': 'released'} dm3 2L 9163318 9248192 DNA 2016-07-06 modERN sonication (Bioruptor generic) 1 1_1 /files/ENCFF068UMU/ 17582494 Kevin White, UChicago 9811ac943e222bf3f6c5ea500a94d40f https://www.encodeproject.org/files/ENCFF699RNH/@@download/ENCFF699RNH.bigWig released s3://encode-public/2016/06/20/48a6c1db-f656-49c5-9e86-82f35fac96fa/ENCFF699RNH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF850FSY fastq fastq reads ENCSR452GUC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4348715761 Roderic Guigo, CRG bc4e02feaf552838d7dcde602e9475b1 https://www.encodeproject.org/files/ENCFF850FSY/@@download/ENCFF850FSY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/6fe30e78-445a-4fd4-9bda-2719354a433f/ENCFF850FSY.fastq.gz ENCFF038MTS fastq fastq reads ENCSR452GUC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 5104305088 Roderic Guigo, CRG 4c0cfb2b2098af5ebc11cad463fa9aa4 https://www.encodeproject.org/files/ENCFF038MTS/@@download/ENCFF038MTS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/f4c3522e-2043-4d31-928d-b0cae2fe72bf/ENCFF038MTS.fastq.gz ENCFF943PUX bam bam alignments GRCh38 ENCSR452GUC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF038MTS/ 5022383503 Roderic Guigo, CRG dbb09e27124c29d8e55b6cf324dbf7ce https://www.encodeproject.org/files/ENCFF943PUX/@@download/ENCFF943PUX.bam released s3://encode-public/2022/01/27/c94a423c-4f06-4d5a-9e36-fa16def251b0/ENCFF943PUX.bam Lab custom GRCh38 released ENCFF443RAG bam bam alignments GRCh38 ENCSR452GUC Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF850FSY/ 4756042893 Roderic Guigo, CRG 1ce1d8e285a37a27ac8dc7ab9137eff4 https://www.encodeproject.org/files/ENCFF443RAG/@@download/ENCFF443RAG.bam released s3://encode-public/2022/01/27/1068a666-27d0-404a-b7bd-9613cb9e083b/ENCFF443RAG.bam Lab custom GRCh38 released ENCFF001ZUR fastq fastq reads ENCSR138YZB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 596917202 Bing Ren, UCSD 1ee4da3686be266caea2ee863bf97c27 SRA:SRR3651468 https://www.encodeproject.org/files/ENCFF001ZUR/@@download/ENCFF001ZUR.fastq.gz Illumina HiSeq 2500 released 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https://www.encodeproject.org/files/ENCFF554UVM/@@download/ENCFF554UVM.bam archived s3://encode-public/2015/02/09/3d8aedac-e3fd-44b3-8e35-e66fe9e1ca8f/ENCFF554UVM.bam low read depth, low read length ENCFF794CMP bam bam unfiltered alignments mm10-minimal ENCSR138YZB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUR/ 787278600 ENCODE Processing Pipeline 479e52c702a7061a71151ca2ebe9a1a3 https://www.encodeproject.org/files/ENCFF794CMP/@@download/ENCFF794CMP.bam archived s3://encode-public/2015/02/09/b6f894f5-6574-4cb3-90a9-f9cebb52624f/ENCFF794CMP.bam low read depth, low read length ENCFF066KEA bam bam alignments mm10-minimal ENCSR138YZB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZVD/ 620969361 ENCODE 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/files/ENCFF018NEO/, /files/ENCFF001ZVD/ 994314344 ENCODE Processing Pipeline c8bee9b7080066b35768d17e94a819ef https://www.encodeproject.org/files/ENCFF611UXH/@@download/ENCFF611UXH.bam released s3://encode-public/2016/05/20/8f6ba226-dc42-4372-b64c-576a8224ed77/ENCFF611UXH.bam ENCODE3 mm10 archived low read depth, low read length ENCFF735XMC bam bam alignments mm10 ENCSR138YZB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZVD/ 620757190 ENCODE Processing Pipeline 5ec2ae9113042d3db4792ffef7771097 https://www.encodeproject.org/files/ENCFF735XMC/@@download/ENCFF735XMC.bam released s3://encode-public/2016/05/20/8b1d9e3b-813e-4a5f-9417-600829327365/ENCFF735XMC.bam ENCODE3 mm10 archived low read depth, low read length ENCFF130PCO bam bam alignments mm10 ENCSR138YZB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus 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mm10 released low read depth, low read length ENCFF770XCJ bam bam unfiltered alignments mm10 ENCSR138YZB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF001ZVD/, /files/ENCFF309GLL/ 966695745 ENCODE Processing Pipeline 856148832ce51c70c308ba52505b08e9 https://www.encodeproject.org/files/ENCFF770XCJ/@@download/ENCFF770XCJ.bam released s3://encode-public/2020/10/08/b9b4c62e-3db1-4908-b490-de42d9284d31/ENCFF770XCJ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF988YEX bam bam alignments mm10 ENCSR138YZB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUR/ 533493881 ENCODE Processing Pipeline 39eb67af6554dbd7c886a91d1cc62d61 https://www.encodeproject.org/files/ENCFF988YEX/@@download/ENCFF988YEX.bam released s3://encode-public/2020/10/08/a1eef6cb-33c5-4acf-b629-62bb61fadbe0/ENCFF988YEX.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF156ZJM fastq fastq reads ENCSR845IKY Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 4096469268 Roderic Guigo, CRG e0cffd311e56615e5652b9ae252f94d5 https://www.encodeproject.org/files/ENCFF156ZJM/@@download/ENCFF156ZJM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/604631ce-8a4d-4e48-9b6e-2b176182a003/ENCFF156ZJM.fastq.gz ENCFF556YPO fastq fastq reads ENCSR845IKY Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4075675753 Roderic Guigo, CRG e834454267e789cbcd3d9238bfa07ca2 https://www.encodeproject.org/files/ENCFF556YPO/@@download/ENCFF556YPO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/c0f6b646-3845-461c-8f39-3a4521f4054e/ENCFF556YPO.fastq.gz ENCFF995TOC bam bam alignments GRCh38 ENCSR845IKY Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF556YPO/ 4505312736 Roderic Guigo, CRG 5ce076c0ffcdc85e9b124e72db1ad7e8 https://www.encodeproject.org/files/ENCFF995TOC/@@download/ENCFF995TOC.bam released s3://encode-public/2022/01/27/33955ea3-475f-47cc-8534-cf0eb4527e8e/ENCFF995TOC.bam Lab custom GRCh38 released ENCFF565SWP bam bam alignments GRCh38 ENCSR845IKY Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF156ZJM/ 4087704051 Roderic Guigo, CRG 6334768ec4a604c49bdef320f852c583 https://www.encodeproject.org/files/ENCFF565SWP/@@download/ENCFF565SWP.bam released s3://encode-public/2022/01/27/ca94af38-0fea-4104-b557-169930b84e53/ENCFF565SWP.bam Lab custom GRCh38 released ENCFF023IUO fastq fastq reads ENCSR112EFN Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 426353273 Kevin White, UChicago 89fd871d7a4f7991ef3a1db66685bdbd https://www.encodeproject.org/files/ENCFF023IUO/@@download/ENCFF023IUO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/b9a225a6-3610-4a85-a0cc-bf244201f5f5/ENCFF023IUO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF624BUW bam bam alignments dm3 ENCSR112EFN Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF023IUO/ 628171794 Kevin White, UChicago b447609153abc286922e1a9667e6a670 https://www.encodeproject.org/files/ENCFF624BUW/@@download/ENCFF624BUW.bam released s3://encode-public/2015/08/05/015fee1e-f9c4-4e3d-8fa1-7b19982bdb33/ENCFF624BUW.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF726SQH bigWig bigWig signal of unique reads dm3 ENCSR112EFN Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF624BUW/ 15091540 Kevin White, UChicago 629cf64d0c7d2042f287cf3af673ecd9 https://www.encodeproject.org/files/ENCFF726SQH/@@download/ENCFF726SQH.bigWig released s3://encode-public/2015/10/05/446b3eb9-b6b4-4037-a873-ab2bc0007adb/ENCFF726SQH.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF894FFK bigWig bigWig read-depth normalized signal dm3 ENCSR112EFN Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF624BUW/ 15094210 Kevin White, UChicago ebc13d3826f6a390a245b72325cd97ef https://www.encodeproject.org/files/ENCFF894FFK/@@download/ENCFF894FFK.bigWig released s3://encode-public/2015/10/05/9ab5f2df-4b58-4152-9442-c273ad5afd48/ENCFF894FFK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF177JXM bam bam alignments dm6 ENCSR112EFN Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF023IUO/ 625524639 Kevin White, UChicago 3e2c07a53d053a6918605ef027c5c520 https://www.encodeproject.org/files/ENCFF177JXM/@@download/ENCFF177JXM.bam released s3://encode-public/2016/04/22/9e9e2a43-fa23-4c2d-9f7f-f3a1651ff1cc/ENCFF177JXM.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF605UIL bigWig bigWig read-depth normalized signal dm6 ENCSR112EFN Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF177JXM/ 17158416 Kevin White, UChicago bc10b5ca525e4d37871a9f4e2c6aee1a https://www.encodeproject.org/files/ENCFF605UIL/@@download/ENCFF605UIL.bigWig released s3://encode-public/2016/06/21/1d672c59-c01e-42fe-b732-bbafb1e561bb/ENCFF605UIL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF057MKW bigWig bigWig signal of unique reads dm6 ENCSR112EFN Control ChIP-seq /fly-donors/ENCDO615WSE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43844/'], '@type': ['Target', 'Item'], 'name': 'Sox102F-dmelanogaster', 'label': 'Sox102F', '@id': '/targets/Sox102F-dmelanogaster/', 'title': 'Sox102F (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '9210a165-f323-460a-bf6a-ec6ac5733d42', 'status': 'released'} dm3 4 810696 884231 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF177JXM/ 17152309 Kevin White, UChicago f5de1b5782ba84e082c04db11afffbfe https://www.encodeproject.org/files/ENCFF057MKW/@@download/ENCFF057MKW.bigWig released s3://encode-public/2016/06/21/638ecac0-7f44-476b-8c97-0ece4ec8033e/ENCFF057MKW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF786HKH fastq fastq reads ENCSR311GKZ Control ChIP-seq /fly-donors/ENCDO021YZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38388/'], '@type': ['Target', 'Item'], 'name': 'CG14965-dmelanogaster', 'label': 'CG14965', '@id': '/targets/CG14965-dmelanogaster/', 'title': 'CG14965 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '31a8839a-3443-4277-98d3-99cbcb044e59', 'status': 'released'} dm3 3L 3174470 3197186 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 583487607 Kevin White, UChicago 6cde2e24ff52cd3ebba63a24e241500d https://www.encodeproject.org/files/ENCFF786HKH/@@download/ENCFF786HKH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/6f3862b4-17c8-441d-8fde-07d20fabef69/ENCFF786HKH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF828EJJ bam bam alignments dm3 ENCSR311GKZ Control ChIP-seq /fly-donors/ENCDO021YZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38388/'], '@type': ['Target', 'Item'], 'name': 'CG14965-dmelanogaster', 'label': 'CG14965', '@id': '/targets/CG14965-dmelanogaster/', 'title': 'CG14965 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '31a8839a-3443-4277-98d3-99cbcb044e59', 'status': 'released'} dm3 3L 3174470 3197186 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF786HKH/ 862662003 Kevin White, UChicago 2420d230caa865e0b7db8360dd5bba65 https://www.encodeproject.org/files/ENCFF828EJJ/@@download/ENCFF828EJJ.bam released s3://encode-public/2015/08/05/ebee21d7-a573-420f-b423-03b8596758fe/ENCFF828EJJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF359OHA bigWig bigWig read-depth normalized signal dm3 ENCSR311GKZ Control ChIP-seq /fly-donors/ENCDO021YZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38388/'], '@type': ['Target', 'Item'], 'name': 'CG14965-dmelanogaster', 'label': 'CG14965', '@id': '/targets/CG14965-dmelanogaster/', 'title': 'CG14965 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '31a8839a-3443-4277-98d3-99cbcb044e59', 'status': 'released'} dm3 3L 3174470 3197186 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF828EJJ/ 15382912 Kevin White, UChicago f853d675880f85744a4519d1f811e993 https://www.encodeproject.org/files/ENCFF359OHA/@@download/ENCFF359OHA.bigWig released s3://encode-public/2015/10/07/596dfa31-6259-44bd-9d63-9a41501688ad/ENCFF359OHA.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF646JCD bigWig bigWig signal of unique reads dm3 ENCSR311GKZ Control ChIP-seq /fly-donors/ENCDO021YZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38388/'], '@type': ['Target', 'Item'], 'name': 'CG14965-dmelanogaster', 'label': 'CG14965', '@id': '/targets/CG14965-dmelanogaster/', 'title': 'CG14965 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '31a8839a-3443-4277-98d3-99cbcb044e59', 'status': 'released'} dm3 3L 3174470 3197186 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF828EJJ/ 15360759 Kevin White, UChicago d37b76b3a79ce7ef7c9bc016606314f8 https://www.encodeproject.org/files/ENCFF646JCD/@@download/ENCFF646JCD.bigWig released s3://encode-public/2015/10/07/0fefe4bb-5dd2-4a5d-8a58-2f4a673fea69/ENCFF646JCD.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF507OHZ bam bam alignments dm6 ENCSR311GKZ Control ChIP-seq /fly-donors/ENCDO021YZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38388/'], '@type': ['Target', 'Item'], 'name': 'CG14965-dmelanogaster', 'label': 'CG14965', '@id': '/targets/CG14965-dmelanogaster/', 'title': 'CG14965 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '31a8839a-3443-4277-98d3-99cbcb044e59', 'status': 'released'} dm3 3L 3174470 3197186 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF786HKH/ 859839618 Kevin White, UChicago bf4a08998ebe67a91e72b6191f40ebae https://www.encodeproject.org/files/ENCFF507OHZ/@@download/ENCFF507OHZ.bam released s3://encode-public/2016/04/21/755803d6-3abc-4f86-b835-f23785931b47/ENCFF507OHZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF192JOG bigWig bigWig signal of unique reads dm6 ENCSR311GKZ Control ChIP-seq /fly-donors/ENCDO021YZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38388/'], '@type': ['Target', 'Item'], 'name': 'CG14965-dmelanogaster', 'label': 'CG14965', '@id': '/targets/CG14965-dmelanogaster/', 'title': 'CG14965 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '31a8839a-3443-4277-98d3-99cbcb044e59', 'status': 'released'} dm3 3L 3174470 3197186 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF507OHZ/ 17451262 Kevin White, UChicago a75d624eacc685158f88309ef758e92a https://www.encodeproject.org/files/ENCFF192JOG/@@download/ENCFF192JOG.bigWig released s3://encode-public/2016/06/20/1f78aa60-97c5-4b36-a6d8-e7420753cc80/ENCFF192JOG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF616RRP bigWig bigWig read-depth normalized signal dm6 ENCSR311GKZ Control ChIP-seq /fly-donors/ENCDO021YZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38388/'], '@type': ['Target', 'Item'], 'name': 'CG14965-dmelanogaster', 'label': 'CG14965', '@id': '/targets/CG14965-dmelanogaster/', 'title': 'CG14965 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '31a8839a-3443-4277-98d3-99cbcb044e59', 'status': 'released'} dm3 3L 3174470 3197186 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF507OHZ/ 17486099 Kevin White, UChicago ba1013bb7f0d20a6625cacd292737ca8 https://www.encodeproject.org/files/ENCFF616RRP/@@download/ENCFF616RRP.bigWig released s3://encode-public/2016/06/20/e29d94c7-cd8b-4a64-8fd5-e26007c5c47b/ENCFF616RRP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF873ZZU fastq fastq reads ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF611URR/ 2444511824 Michael Snyder, Stanford 2a662b5f2ceda3c6c602bcaf2cef20cd SRA:SRR5112225 https://www.encodeproject.org/files/ENCFF873ZZU/@@download/ENCFF873ZZU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/89250627-9d23-4526-adfd-ce4d4d2bc008/ENCFF873ZZU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF611URR fastq fastq reads ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF873ZZU/ 2483763747 Michael Snyder, Stanford 8d23d2387244dfd96aa34932212d5741 SRA:SRR5112225 https://www.encodeproject.org/files/ENCFF611URR/@@download/ENCFF611URR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/01/2397d7b5-74da-4b06-a144-9add67edde59/ENCFF611URR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF307JRV bam bam alignments GRCh38 ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF611URR/, /files/ENCFF873ZZU/, /files/ENCFF643CGH/ 4292613023 ENCODE Processing Pipeline cf6fd9e3d16e07594b72abb1fad7e9fc https://www.encodeproject.org/files/ENCFF307JRV/@@download/ENCFF307JRV.bam released s3://encode-public/2016/08/13/156d6880-e535-4d24-8c35-10c80551dba3/ENCFF307JRV.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF645TSL bam bam unfiltered alignments GRCh38 ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF611URR/, /files/ENCFF873ZZU/, /files/ENCFF643CGH/ 5060125825 ENCODE Processing Pipeline d0b787e100276f9bdec8dab71689f5a6 https://www.encodeproject.org/files/ENCFF645TSL/@@download/ENCFF645TSL.bam released s3://encode-public/2016/08/13/5d2ffbe8-1c07-446e-8a0e-ad71acecbf73/ENCFF645TSL.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing biosample characterization ENCFF755GMZ bam bam unfiltered alignments hg19 ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF611URR/, /files/ENCFF807MUK/, /files/ENCFF873ZZU/ 5053313983 ENCODE Processing Pipeline 95e6faafe70e3c664bcd38cf0575bedb https://www.encodeproject.org/files/ENCFF755GMZ/@@download/ENCFF755GMZ.bam released s3://encode-public/2016/09/11/7c784b50-377b-482c-90c6-1aa241d85167/ENCFF755GMZ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF993QCT bam bam alignments hg19 ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF611URR/, /files/ENCFF807MUK/, /files/ENCFF873ZZU/ 4290480737 ENCODE Processing Pipeline ee98d725442efd787d7da2629d1c0258 https://www.encodeproject.org/files/ENCFF993QCT/@@download/ENCFF993QCT.bam released s3://encode-public/2016/09/11/cc1265eb-99a7-4a35-bb93-16d41b573064/ENCFF993QCT.bam ENCODE3 hg19 archived missing genetic modification characterization, missing biosample characterization ENCFF118QVY bam bam unfiltered alignments GRCh38 ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF873ZZU/, /files/ENCFF611URR/ 5121348292 ENCODE Processing Pipeline 0e9f3c15d64d7a6b71b1e7fc50ee6c1c https://www.encodeproject.org/files/ENCFF118QVY/@@download/ENCFF118QVY.bam released s3://encode-public/2020/06/02/230b1dfb-3fac-4583-af72-4046d2a0a3ee/ENCFF118QVY.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF533HJT bam bam alignments GRCh38 ENCSR007GUS Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001182 HEK293 cell line Homo sapiens site-specific recombination insertion {'dbxrefs': ['FactorBook:CTCF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10664/'], '@type': ['Target', 'Item'], 'label': 'CTCF', 'title': 'CTCF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '80f4c52e-c7bc-4afc-b159-89cb10367780', 'schema_version': '14', 'name': 'CTCF-human', '@id': '/targets/CTCF-human/', 'status': 'released'} DNA formaldehyde 2016-10-07 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF873ZZU/, /files/ENCFF611URR/ 4362548125 ENCODE Processing Pipeline b7a96de05694c847399268d9335f895c https://www.encodeproject.org/files/ENCFF533HJT/@@download/ENCFF533HJT.bam released s3://encode-public/2020/06/02/69dc9fe6-8159-48c7-804e-b6a87f4a7856/ENCFF533HJT.bam ENCODE4 v1.4.0 GRCh38 released missing genetic modification characterization, missing biosample characterization ENCFF093MCZ fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 1 1_1 36 single-ended 789333659 Bradley Bernstein, Broad 7eac1c268bfeba82be33af442eee6afb SRA:SRR4235649 https://www.encodeproject.org/files/ENCFF093MCZ/@@download/ENCFF093MCZ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/02/24/87767766-1bcf-4717-beb9-bdd5540d21de/ENCFF093MCZ.fastq.gz mixed run types, low read length, mixed read lengths ENCFF228EQX fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 1 /files/ENCFF562GUH/ 1349330947 Bradley Bernstein, Broad cefb6f190d9265df93a8f9519e76f44c https://www.encodeproject.org/files/ENCFF228EQX/@@download/ENCFF228EQX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/b06107b4-ee47-46d6-9676-500a1770f558/ENCFF228EQX.fastq.gz mixed run types, low read length, mixed read lengths ENCFF562GUH fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 2 /files/ENCFF228EQX/ 1367886476 Bradley Bernstein, Broad 793a4a2ef2f9c5a343d76c6b56cba8ea https://www.encodeproject.org/files/ENCFF562GUH/@@download/ENCFF562GUH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/d7971b8a-b3d6-400d-a176-e2bfaeb09940/ENCFF562GUH.fastq.gz mixed run types, low read length, mixed read lengths ENCFF475WXS fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 1 /files/ENCFF042YGY/ 1307981357 Bradley Bernstein, Broad 0339e3fa50892ff90257d45523953be9 https://www.encodeproject.org/files/ENCFF475WXS/@@download/ENCFF475WXS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/eb6a05ba-d1e4-4803-95aa-256ba767da52/ENCFF475WXS.fastq.gz mixed run types, low read length, mixed read lengths ENCFF042YGY fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 2 /files/ENCFF475WXS/ 1327832452 Bradley Bernstein, Broad d21b30980e9d4dfa982a0b7a37780ffe https://www.encodeproject.org/files/ENCFF042YGY/@@download/ENCFF042YGY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/b99da555-aa19-4d0a-9d54-b1695dbc505f/ENCFF042YGY.fastq.gz mixed run types, low read length, mixed read lengths ENCFF489HIX fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 1 /files/ENCFF221KGD/ 1359599761 Bradley Bernstein, Broad 998d2677d8233e9438aab24af3dd88d0 https://www.encodeproject.org/files/ENCFF489HIX/@@download/ENCFF489HIX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/5b204df1-9566-4871-b9e4-ecc29d5e3c36/ENCFF489HIX.fastq.gz mixed run types, low read length, mixed read lengths ENCFF221KGD fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 2 /files/ENCFF489HIX/ 1384251150 Bradley Bernstein, Broad 2a1dc3129ad140fe57c3e7094dc5f08e https://www.encodeproject.org/files/ENCFF221KGD/@@download/ENCFF221KGD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/bb4a830b-fd9a-4af4-9fc7-0869e79f0e06/ENCFF221KGD.fastq.gz mixed run types, low read length, mixed read lengths ENCFF890HQY fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 1 /files/ENCFF337OHH/ 1306907284 Bradley Bernstein, Broad 5988ccf3d3a94ef1710ba299c155be99 https://www.encodeproject.org/files/ENCFF890HQY/@@download/ENCFF890HQY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/3559d5d7-b0c8-49e7-8436-98665b410127/ENCFF890HQY.fastq.gz mixed run types, low read length, mixed read lengths ENCFF337OHH fastq fastq reads ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 76 paired-ended 2 /files/ENCFF890HQY/ 1330257545 Bradley Bernstein, Broad 84dc2e1ae7a875016aecf1214cf07abe https://www.encodeproject.org/files/ENCFF337OHH/@@download/ENCFF337OHH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/19/2da7c801-e830-4cb6-a5c9-d9ec8c855e5f/ENCFF337OHH.fastq.gz mixed run types, low read length, mixed read lengths ENCFF355WDB bam bam unfiltered alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 36 /files/ENCFF890HQY/, /files/ENCFF228EQX/, /files/ENCFF643CGH/, /files/ENCFF489HIX/, /files/ENCFF475WXS/ 3532545709 ENCODE Processing Pipeline 0ba84061a6eb35cc17031e82421f1588 https://www.encodeproject.org/files/ENCFF355WDB/@@download/ENCFF355WDB.bam released s3://encode-public/2016/10/25/bad1b0aa-80a9-4a0d-bbec-9e33f2ebb357/ENCFF355WDB.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF295EER bam bam unfiltered alignments hg19 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 36 /files/ENCFF890HQY/, /files/ENCFF228EQX/, /files/ENCFF807MUK/, /files/ENCFF489HIX/, /files/ENCFF475WXS/ 3510494368 ENCODE Processing Pipeline 72e2fd45a5fa7abce73b9ff6002c1dcd https://www.encodeproject.org/files/ENCFF295EER/@@download/ENCFF295EER.bam released s3://encode-public/2016/10/25/ba7aff6b-9df0-4982-8684-30eedaad09f5/ENCFF295EER.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF212AOK bam bam alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 36 /files/ENCFF890HQY/, /files/ENCFF228EQX/, /files/ENCFF643CGH/, /files/ENCFF489HIX/, /files/ENCFF475WXS/ 2506753715 ENCODE Processing Pipeline da2456bf5d41851673e01fdbd1552e91 https://www.encodeproject.org/files/ENCFF212AOK/@@download/ENCFF212AOK.bam released s3://encode-public/2016/10/25/e3cc9ac0-cf2b-48c5-9b36-3d6592231c97/ENCFF212AOK.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF144FLB bam bam alignments hg19 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 36 /files/ENCFF890HQY/, /files/ENCFF228EQX/, /files/ENCFF807MUK/, /files/ENCFF489HIX/, /files/ENCFF475WXS/ 2507678494 ENCODE Processing Pipeline d01617af6b326211f40d8c3114ba2545 https://www.encodeproject.org/files/ENCFF144FLB/@@download/ENCFF144FLB.bam released s3://encode-public/2016/10/25/547e3396-2f56-4151-9969-e6e37d8bb4d6/ENCFF144FLB.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF998GJF bam bam unfiltered alignments hg19 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 1 1_1 36 /files/ENCFF093MCZ/, /files/ENCFF807MUK/ 1172919507 ENCODE Processing Pipeline c11c2b75fe284b8e691e47794ae03d03 https://www.encodeproject.org/files/ENCFF998GJF/@@download/ENCFF998GJF.bam released s3://encode-public/2016/10/26/9804719d-1f20-4a0a-a70d-116157f41894/ENCFF998GJF.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF574DLY bam bam alignments hg19 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 1 1_1 36 /files/ENCFF093MCZ/, /files/ENCFF807MUK/ 836682294 ENCODE Processing Pipeline 1f61362dbd0e0e75807bb51fe7ca9f8d https://www.encodeproject.org/files/ENCFF574DLY/@@download/ENCFF574DLY.bam released s3://encode-public/2016/10/26/b340564f-d341-4682-9be2-8ebac7ac7507/ENCFF574DLY.bam ENCODE3 hg19 archived mixed run types, low read length, mixed read lengths ENCFF066FXF bam bam unfiltered alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 1 1_1 36 /files/ENCFF093MCZ/, /files/ENCFF643CGH/ 1180122483 ENCODE Processing Pipeline 18f38b8edc17dbcd703e7c1d93118270 https://www.encodeproject.org/files/ENCFF066FXF/@@download/ENCFF066FXF.bam released s3://encode-public/2016/11/03/22ea9bd8-7f55-4ddb-8fda-1afcb3010545/ENCFF066FXF.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF691EEI bam bam alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 1 1_1 36 /files/ENCFF093MCZ/, /files/ENCFF643CGH/ 836356542 ENCODE Processing Pipeline b61dedc06223daf3b86b06cc8a04bef7 https://www.encodeproject.org/files/ENCFF691EEI/@@download/ENCFF691EEI.bam released s3://encode-public/2016/11/03/d1390308-355b-4334-8cfd-b882afc746d3/ENCFF691EEI.bam ENCODE3 GRCh38 archived mixed run types, low read length, mixed read lengths ENCFF282SLB bam bam unfiltered alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 1 1_1 36 /files/ENCFF093MCZ/, /files/ENCFF110MCL/ 1152350721 ENCODE Processing Pipeline 2bd22d15cab9fc73a5f856e59f11e806 https://www.encodeproject.org/files/ENCFF282SLB/@@download/ENCFF282SLB.bam released s3://encode-public/2020/09/17/a7516db1-fa86-4bfb-8f54-5d95f162fa44/ENCFF282SLB.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF550XWH bam bam unfiltered alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 36 /files/ENCFF489HIX/, /files/ENCFF475WXS/, /files/ENCFF110MCL/, /files/ENCFF890HQY/, /files/ENCFF228EQX/ 3446338333 ENCODE Processing Pipeline 73554873bfbdb9de6c8b6d6c009155b3 https://www.encodeproject.org/files/ENCFF550XWH/@@download/ENCFF550XWH.bam released s3://encode-public/2020/09/17/a703df3f-f840-450f-970d-f157f25e5cf1/ENCFF550XWH.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF360MVP bam bam alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 1 1_1 36 /files/ENCFF093MCZ/, /files/ENCFF110MCL/ 916420312 ENCODE Processing Pipeline c3ccd144628d01b8dc1dbe5eb683ae5f https://www.encodeproject.org/files/ENCFF360MVP/@@download/ENCFF360MVP.bam released s3://encode-public/2020/09/17/ce67e09c-d0a0-40b1-a386-4cd2592b06a4/ENCFF360MVP.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF581DCV bam bam alignments GRCh38 ENCSR361GKY Control ChIP-seq /human-donors/ENCDO355AAA/ EFO:0006710 OCI-LY3 cell line Homo sapiens DNA 2014-07-11 ENCODE see document 200-600, 300-600 2 2_1 36 /files/ENCFF489HIX/, /files/ENCFF475WXS/, /files/ENCFF110MCL/, /files/ENCFF890HQY/, /files/ENCFF228EQX/ 2744157731 ENCODE Processing Pipeline a777c7a6a20a8a0b7297eac65d1b86cf https://www.encodeproject.org/files/ENCFF581DCV/@@download/ENCFF581DCV.bam released s3://encode-public/2020/09/17/0fc6ab92-de3e-4394-8fb2-1fe41fb78ee3/ENCFF581DCV.bam ENCODE4 v1.5.1 GRCh38 released mixed run types, low read length, mixed read lengths ENCFF708ZMD fastq fastq reads ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF311NEY/ 3875951584 Michael Snyder, Stanford cdfe71eea9365d34434b0408cf60688a SRA:SRR5112267 https://www.encodeproject.org/files/ENCFF708ZMD/@@download/ENCFF708ZMD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/452f3586-b7cc-4a41-9e29-fede16786091/ENCFF708ZMD.fastq.gz mild to moderate bottlenecking ENCFF311NEY fastq fastq reads ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF708ZMD/ 3698909081 Michael Snyder, Stanford 4df72e4d067b058270ac98f9c18a639c SRA:SRR5112267 https://www.encodeproject.org/files/ENCFF311NEY/@@download/ENCFF311NEY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/5d21ea9c-3a99-4062-9468-0baacfb86e36/ENCFF311NEY.fastq.gz mild to moderate bottlenecking ENCFF998BWE fastq fastq reads ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF033KKQ/ 2341211132 Michael Snyder, Stanford fa3aafe70d898c1cf7a46ce845da3d94 SRA:SRR5112266 https://www.encodeproject.org/files/ENCFF998BWE/@@download/ENCFF998BWE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/5afed8ee-da2e-4e63-908b-2f52f331dd12/ENCFF998BWE.fastq.gz mild to moderate bottlenecking ENCFF033KKQ fastq fastq reads ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF998BWE/ 2194337983 Michael Snyder, Stanford 47c4dc225c9d0de877042bb97ef23c11 SRA:SRR5112266 https://www.encodeproject.org/files/ENCFF033KKQ/@@download/ENCFF033KKQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/09/01/a6621f72-a49f-4ecd-9c4b-c4e175d69dcb/ENCFF033KKQ.fastq.gz mild to moderate bottlenecking ENCFF866YXI bam bam unfiltered alignments hg19 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF033KKQ/, /files/ENCFF807MUK/, /files/ENCFF998BWE/ 4523523367 ENCODE Processing Pipeline 279d63ae0bd7fe29aef530890cddcd2f https://www.encodeproject.org/files/ENCFF866YXI/@@download/ENCFF866YXI.bam released s3://encode-public/2016/09/16/c09a42b6-0887-4679-ac2b-07aef7aaf61f/ENCFF866YXI.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF347AGZ bam bam unfiltered alignments GRCh38 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF033KKQ/, /files/ENCFF643CGH/, /files/ENCFF998BWE/ 4532903330 ENCODE Processing Pipeline 82d8e5f27f522d7acc4eeb9176de7d2a https://www.encodeproject.org/files/ENCFF347AGZ/@@download/ENCFF347AGZ.bam released s3://encode-public/2016/09/16/777678a4-b089-4616-b101-4f2d1abad42a/ENCFF347AGZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF688JJI bam bam unfiltered alignments GRCh38 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF311NEY/, /files/ENCFF643CGH/, /files/ENCFF708ZMD/ 7320167031 ENCODE Processing Pipeline a2f1f18822eef3eaa9bc3001876c6ac5 https://www.encodeproject.org/files/ENCFF688JJI/@@download/ENCFF688JJI.bam released s3://encode-public/2016/09/16/5e6889b7-5b11-45fa-8697-e4986e22e716/ENCFF688JJI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF275MAH bam bam unfiltered alignments hg19 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF311NEY/, /files/ENCFF807MUK/, /files/ENCFF708ZMD/ 7312108679 ENCODE Processing Pipeline 615094af8f60dc062236cb49f8a40df7 https://www.encodeproject.org/files/ENCFF275MAH/@@download/ENCFF275MAH.bam released s3://encode-public/2016/09/16/0d2ff181-81d9-49e3-bb11-c81606e11618/ENCFF275MAH.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF191XYH bam bam alignments GRCh38 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF033KKQ/, /files/ENCFF643CGH/, /files/ENCFF998BWE/ 3474472414 ENCODE Processing Pipeline bb143f8b49753c9d28a104e2e02b5631 https://www.encodeproject.org/files/ENCFF191XYH/@@download/ENCFF191XYH.bam released s3://encode-public/2016/09/16/7cdf88ee-daaf-4313-8f03-760c6c30c934/ENCFF191XYH.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF823USR bam bam alignments hg19 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 101 /files/ENCFF033KKQ/, /files/ENCFF807MUK/, /files/ENCFF998BWE/ 3469186425 ENCODE Processing Pipeline fa0ac1a823ed6cefd6cbd911070a9301 https://www.encodeproject.org/files/ENCFF823USR/@@download/ENCFF823USR.bam released s3://encode-public/2016/09/16/88a66e47-99fd-470e-8378-c4e66e9c3fa0/ENCFF823USR.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF447KVS bam bam alignments hg19 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF311NEY/, /files/ENCFF807MUK/, /files/ENCFF708ZMD/ 5434575607 ENCODE Processing Pipeline 61bffda2977c5fdd83396a05d44a8a79 https://www.encodeproject.org/files/ENCFF447KVS/@@download/ENCFF447KVS.bam released s3://encode-public/2016/09/16/b5aedc66-da35-49b7-b45f-e27efdbd1bec/ENCFF447KVS.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF746SKT bam bam alignments GRCh38 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 101 /files/ENCFF311NEY/, /files/ENCFF643CGH/, /files/ENCFF708ZMD/ 5446577921 ENCODE Processing Pipeline 3a472856f843fdc16fa08bb687faf316 https://www.encodeproject.org/files/ENCFF746SKT/@@download/ENCFF746SKT.bam released s3://encode-public/2016/09/16/b3d2c3ab-a97c-498e-a920-0a05114ffb52/ENCFF746SKT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF851GKN bam bam unfiltered alignments GRCh38 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF311NEY/, /files/ENCFF708ZMD/ 7318490899 ENCODE Processing Pipeline be3fcbeecf80bcaf0b2da09d8eca50e4 https://www.encodeproject.org/files/ENCFF851GKN/@@download/ENCFF851GKN.bam released s3://encode-public/2020/05/21/ffda2396-8d69-48f1-9d43-04b093149ab7/ENCFF851GKN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF802GOJ bam bam unfiltered alignments GRCh38 ENCSR882IYK Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2016-09-20 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF033KKQ/, /files/ENCFF998BWE/ 4533909001 ENCODE Processing Pipeline 07464b6e98658962228adc5dd378e05d https://www.encodeproject.org/files/ENCFF802GOJ/@@download/ENCFF802GOJ.bam released s3://encode-public/2020/05/21/735ed083-8522-4ad6-86b3-557669d5707f/ENCFF802GOJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF918CII bam bam alignments GRCh38 ENCSR882IYK Control ChIP-seq 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UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXY/, /files/ENCFF309GLL/ 1049553226 ENCODE Processing Pipeline 3f672bd84c30256b6c3a5f2f8ba38e6c https://www.encodeproject.org/files/ENCFF788PDZ/@@download/ENCFF788PDZ.bam released s3://encode-public/2020/10/08/e188c0db-51ac-4774-b873-c74087b91aeb/ENCFF788PDZ.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF491PFG bam bam alignments mm10 ENCSR559FAB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002BYA/, /files/ENCFF309GLL/ 667947274 ENCODE Processing Pipeline 336a105a523a1fb967c4a9f063a0944e https://www.encodeproject.org/files/ENCFF491PFG/@@download/ENCFF491PFG.bam released s3://encode-public/2020/10/08/fd6ba062-c3b6-43e6-a7d8-ca9c7e741075/ENCFF491PFG.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF634LMG bam bam alignments mm10 ENCSR559FAB Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0002048 lung tissue Mus musculus DNA SDS 2014-12-17 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002BXY/, /files/ENCFF309GLL/ 687557871 ENCODE Processing Pipeline d920587348f9a0dc140b97eb001fb835 https://www.encodeproject.org/files/ENCFF634LMG/@@download/ENCFF634LMG.bam released s3://encode-public/2020/10/08/bf5745ea-d51a-45ff-bba9-47dfbe636986/ENCFF634LMG.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF189ZTS fastq fastq reads ENCSR921JGF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80034/'], '@type': ['Target', 'Item'], 'name': 'CSRNP3-human', 'label': 'CSRNP3', '@id': '/targets/CSRNP3-human/', 'title': 'CSRNP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f49e1d9b-3d85-4794-8503-51b70d603045', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF686LLG/ 2309366689 Michael Snyder, Stanford ddfde8d295519b0d53802b11aa1c7198 https://www.encodeproject.org/files/ENCFF189ZTS/@@download/ENCFF189ZTS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/17/ea535741-4a50-4a49-8ff5-a95ad92eb1b6/ENCFF189ZTS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF686LLG fastq fastq reads ENCSR921JGF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80034/'], '@type': ['Target', 'Item'], 'name': 'CSRNP3-human', 'label': 'CSRNP3', '@id': '/targets/CSRNP3-human/', 'title': 'CSRNP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f49e1d9b-3d85-4794-8503-51b70d603045', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF189ZTS/ 2705301153 Michael Snyder, Stanford 3bac938a81a8252b64f266cc3fbac942 https://www.encodeproject.org/files/ENCFF686LLG/@@download/ENCFF686LLG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/17/79649454-dacc-4bfb-aa98-29b58ff85b5f/ENCFF686LLG.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF861JTK bam bam unfiltered alignments GRCh38 ENCSR921JGF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80034/'], '@type': ['Target', 'Item'], 'name': 'CSRNP3-human', 'label': 'CSRNP3', '@id': '/targets/CSRNP3-human/', 'title': 'CSRNP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f49e1d9b-3d85-4794-8503-51b70d603045', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF189ZTS/, /files/ENCFF686LLG/ 4575467528 ENCODE Processing Pipeline 3c97721674c9335b8f2262dce800972d https://www.encodeproject.org/files/ENCFF861JTK/@@download/ENCFF861JTK.bam released s3://encode-public/2020/04/21/89e0bf02-a950-4954-bc53-2c1a9473e38a/ENCFF861JTK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF553TQX bam bam alignments GRCh38 ENCSR921JGF Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80034/'], '@type': ['Target', 'Item'], 'name': 'CSRNP3-human', 'label': 'CSRNP3', '@id': '/targets/CSRNP3-human/', 'title': 'CSRNP3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f49e1d9b-3d85-4794-8503-51b70d603045', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF189ZTS/, /files/ENCFF686LLG/ 3162790956 ENCODE Processing Pipeline 993fd8f5fcd010f83144ad195633ab79 https://www.encodeproject.org/files/ENCFF553TQX/@@download/ENCFF553TQX.bam released s3://encode-public/2020/04/21/d0e099a1-5732-4908-b446-2185fb33aacb/ENCFF553TQX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF606IKE fastq fastq reads ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 148505568 Michael Snyder, Stanford fcf1063454a8e347e9313765bd7282e6 https://www.encodeproject.org/files/ENCFF606IKE/@@download/ENCFF606IKE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/4392c882-3e3e-4617-a404-5a9385fde864/ENCFF606IKE.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF099BSX fastq fastq reads ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 169948613 Michael Snyder, Stanford 7f74fe7dfb3f37d63008e405a0a270bf https://www.encodeproject.org/files/ENCFF099BSX/@@download/ENCFF099BSX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/08027bbf-cb4f-45a0-a8b0-56c4bdf965ca/ENCFF099BSX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF353EGV bam bam alignments ce10 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF606IKE/, /files/ENCFF099BSX/, /files/ENCFF987UMF/ 152548267 Kevin White, UChicago bc3c37265bec1f59bc6e828dc545ad68 https://www.encodeproject.org/files/ENCFF353EGV/@@download/ENCFF353EGV.bam archived s3://encode-public/2017/04/27/9afc661c-1c52-42f9-acd8-92816ec49fa7/ENCFF353EGV.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF628MZL bam bam alignments ce11 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF606IKE/, /files/ENCFF099BSX/, /files/ENCFF586MOL/ 152666684 Kevin White, UChicago ab55b85146bbb5fb356306f97cf89ab6 https://www.encodeproject.org/files/ENCFF628MZL/@@download/ENCFF628MZL.bam archived s3://encode-public/2017/04/27/cec1d951-fc92-41a8-93c4-0ab0f6742e5d/ENCFF628MZL.bam missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF032OBX bigWig bigWig signal of unique reads ce10 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF865JFQ/ 10040739 Kevin White, UChicago ef66978b4367f96fa3502eb1b5fd1fd2 https://www.encodeproject.org/files/ENCFF032OBX/@@download/ENCFF032OBX.bigWig released s3://encode-public/2017/04/29/dfdc599d-0b60-4894-b2a4-69cff2569346/ENCFF032OBX.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF109ZRG bigWig bigWig read-depth normalized signal ce10 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF865JFQ/ 9990431 Kevin White, UChicago 573985291077ed8c11bb8c013e2b6a5f https://www.encodeproject.org/files/ENCFF109ZRG/@@download/ENCFF109ZRG.bigWig released s3://encode-public/2017/04/29/048b0e2a-24ed-42ca-9677-d3451738f6b6/ENCFF109ZRG.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF317PCQ bigWig bigWig read-depth normalized signal ce11 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF706ZWS/ 9988766 Kevin White, UChicago 0c1df4ecfebe434bb6aa5fe7668b5a60 https://www.encodeproject.org/files/ENCFF317PCQ/@@download/ENCFF317PCQ.bigWig archived s3://encode-public/2017/04/29/bf4e3ff4-39a7-4e4a-a7a7-469e825ec0db/ENCFF317PCQ.bigWig missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF270KSO bigWig bigWig signal of unique reads ce11 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF706ZWS/ 10039908 Kevin White, UChicago 227ed574bea5850ee0787044ada7926b https://www.encodeproject.org/files/ENCFF270KSO/@@download/ENCFF270KSO.bigWig archived s3://encode-public/2017/04/29/68bcbd7d-6311-481a-a361-55a6fc63b599/ENCFF270KSO.bigWig missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF865JFQ bam bam alignments ce10 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF606IKE/, /files/ENCFF099BSX/, /files/ENCFF987UMF/ 325879791 Kevin White, UChicago 74c04e017d2f83df361767153ecdf65b https://www.encodeproject.org/files/ENCFF865JFQ/@@download/ENCFF865JFQ.bam released s3://encode-public/2017/11/13/79dc7c9b-c88d-48eb-bbbe-ea09475471fc/ENCFF865JFQ.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF706ZWS bam bam alignments ce11 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF606IKE/, /files/ENCFF099BSX/, /files/ENCFF586MOL/ 326128858 Kevin White, UChicago 002d7ba461c8c26a205551210a506255 https://www.encodeproject.org/files/ENCFF706ZWS/@@download/ENCFF706ZWS.bam released s3://encode-public/2017/11/13/89a600c0-9072-4a2d-8f3a-fe3a0ea4e31d/ENCFF706ZWS.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF509EAN bigWig bigWig read-depth normalized signal ce11 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF706ZWS/ 9990432 Kevin White, UChicago d267fe7be1ede38c9c36e96427e452af https://www.encodeproject.org/files/ENCFF509EAN/@@download/ENCFF509EAN.bigWig released s3://encode-public/2017/11/13/0a98b4b9-d2a8-4bf6-a2ed-819aa658178f/ENCFF509EAN.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF213JLA bigWig bigWig signal of unique reads ce11 ENCSR191QNY Control ChIP-seq /worm-donors/ENCDO185HNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF706ZWS/ 10040741 Kevin White, UChicago db62a6b7ad99c934451eed677eeaec7a https://www.encodeproject.org/files/ENCFF213JLA/@@download/ENCFF213JLA.bigWig released s3://encode-public/2017/11/13/3a691285-fc59-47d0-bfc4-64f4dcb6116e/ENCFF213JLA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization, missing genotype ENCFF711SIT bam bam unfiltered alignments hg19 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECP/, /files/ENCFF807MUK/ 1851077936 ENCODE Processing Pipeline 43677fa1c2b021fba783f002e8eb8608 https://www.encodeproject.org/files/ENCFF711SIT/@@download/ENCFF711SIT.bam released s3://encode-public/2018/02/21/199a8f06-ce06-4505-8ac3-c8ab59a047f4/ENCFF711SIT.bam ENCODE3 hg19 archived low read length ENCFF306ZVX bam bam unfiltered alignments hg19 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECR/ 1769286312 ENCODE Processing Pipeline f7daab9c4f546b19236db1235fc6a1b1 https://www.encodeproject.org/files/ENCFF306ZVX/@@download/ENCFF306ZVX.bam released s3://encode-public/2018/02/22/7aaf83dd-5e4a-4c05-b60b-5847b28e18e3/ENCFF306ZVX.bam ENCODE3 hg19 archived low read length ENCFF002ECP fastq fastq reads ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 single-ended 1367668939 Michael Snyder, Stanford f0aa45fdb68296e515510ba17bfec95a SRA:SRR5111763 https://www.encodeproject.org/files/ENCFF002ECP/@@download/ENCFF002ECP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/0e9850a5-64a8-4ef0-87ce-7d08a65c8e2f/ENCFF002ECP.fastq.gz low read length ENCFF002ECR fastq fastq reads ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 single-ended 1268630497 Michael Snyder, Stanford dab7e69793be447f398d2b5f6957308f SRA:SRR5111762 https://www.encodeproject.org/files/ENCFF002ECR/@@download/ENCFF002ECR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2014/07/04/62a7ab39-3a88-4b93-9970-ed396e689387/ENCFF002ECR.fastq.gz low read length ENCFF849LYY bam bam alignments hg19 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECP/, /files/ENCFF807MUK/ 1350249529 ENCODE Processing Pipeline 119c6e88f1c7f4ed30e3501cf27559ec https://www.encodeproject.org/files/ENCFF849LYY/@@download/ENCFF849LYY.bam released s3://encode-public/2015/10/29/99a56bbd-03c3-411a-8908-710ba9536b49/ENCFF849LYY.bam ENCODE3 hg19 archived low read length ENCFF426WJH bam bam alignments hg19 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF002ECR/ 1224623078 ENCODE Processing Pipeline 596f6baabde7039be8455fc32fe9ecd6 https://www.encodeproject.org/files/ENCFF426WJH/@@download/ENCFF426WJH.bam released s3://encode-public/2015/10/29/5d799049-4dfb-4eb4-98d9-f0be7fae0ec8/ENCFF426WJH.bam ENCODE3 hg19 archived low read length ENCFF117MXN bam bam unfiltered alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECP/, /files/ENCFF643CGH/ 1859531663 ENCODE Processing Pipeline d8b7aea7450598194afef83e12e89a5e https://www.encodeproject.org/files/ENCFF117MXN/@@download/ENCFF117MXN.bam released s3://encode-public/2016/05/06/0151b0c0-687d-4ddc-a0f1-b111d73fe1e7/ENCFF117MXN.bam ENCODE3 GRCh38 archived low read length ENCFF188SXC bam bam unfiltered alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECR/ 1778681463 ENCODE Processing Pipeline e1ce0699e9c65262250ba6386e7d65f0 https://www.encodeproject.org/files/ENCFF188SXC/@@download/ENCFF188SXC.bam released s3://encode-public/2016/05/06/fae82376-4731-4470-b157-959318f1d2dd/ENCFF188SXC.bam ENCODE3 GRCh38 archived low read length ENCFF272DEZ bam bam alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECP/, /files/ENCFF643CGH/ 1352690290 ENCODE Processing Pipeline d36013be5df05b4bce3a77fbbbd9f48b https://www.encodeproject.org/files/ENCFF272DEZ/@@download/ENCFF272DEZ.bam released s3://encode-public/2016/05/06/81ee5958-f004-425b-84d3-dc9522668705/ENCFF272DEZ.bam ENCODE3 GRCh38 archived low read length ENCFF872ERZ bam bam alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF002ECR/ 1225288300 ENCODE Processing Pipeline b885fbbeae0ddb7259a24903a311b3e4 https://www.encodeproject.org/files/ENCFF872ERZ/@@download/ENCFF872ERZ.bam released s3://encode-public/2016/05/06/e78a838a-db50-4602-a966-d8eb5bc1400e/ENCFF872ERZ.bam ENCODE3 GRCh38 archived low read length ENCFF790DMI bam bam unfiltered alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECR/, /files/ENCFF110MCL/ 1709526091 ENCODE Processing Pipeline 437e272009e862cea725146c0efe8f38 https://www.encodeproject.org/files/ENCFF790DMI/@@download/ENCFF790DMI.bam released s3://encode-public/2020/06/13/a8d58225-686c-4a93-acf5-3885f43a8b28/ENCFF790DMI.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF666TPD bam bam unfiltered alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECP/, /files/ENCFF110MCL/ 1813018870 ENCODE Processing Pipeline 564fae4c4974ed9324801057c80aec7d https://www.encodeproject.org/files/ENCFF666TPD/@@download/ENCFF666TPD.bam released s3://encode-public/2020/06/13/8f05fbad-529a-4186-b3bb-b52d8f5f9ed5/ENCFF666TPD.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF402BOP bam bam alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 2 2_1 36 /files/ENCFF002ECP/, /files/ENCFF110MCL/ 1440541413 ENCODE Processing Pipeline 9090fbc97d8db0af7e0e9f4cb381589c https://www.encodeproject.org/files/ENCFF402BOP/@@download/ENCFF402BOP.bam released s3://encode-public/2020/06/13/f72b6882-8b29-4b79-a117-03d86e058f3a/ENCFF402BOP.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF500GXC bam bam alignments GRCh38 ENCSR553NUG Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 150-350 1 1_1 36 /files/ENCFF002ECR/, /files/ENCFF110MCL/ 1310872771 ENCODE Processing Pipeline 3f20f355f69b565222fa4913bc99e083 https://www.encodeproject.org/files/ENCFF500GXC/@@download/ENCFF500GXC.bam released s3://encode-public/2020/06/13/fffabc12-2fa7-4fd8-a56a-4730c769a0f8/ENCFF500GXC.bam ENCODE4 v1.4.0 GRCh38 released low read length ENCFF695RVC fastq fastq reads ENCSR918WXD Control ChIP-seq /worm-donors/ENCDO285LJA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192081/'], '@type': ['Target', 'Item'], 'name': 'unc-42-celegans', 'label': 'unc-42', '@id': '/targets/unc-42-celegans/', 'title': 'unc-42 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0cb669a4-5952-4528-8e31-902758bb3b48', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 729955984 Kevin White, UChicago 73ed73552c1c70a75cf9a2ddd799aca8 https://www.encodeproject.org/files/ENCFF695RVC/@@download/ENCFF695RVC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/680443a6-fdbe-4ef2-b5e2-dbaad760a2de/ENCFF695RVC.fastq.gz missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, mild to moderate bottlenecking ENCFF543EMI bam bam alignments ce10 ENCSR918WXD Control ChIP-seq /worm-donors/ENCDO285LJA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192081/'], '@type': ['Target', 'Item'], 'name': 'unc-42-celegans', 'label': 'unc-42', '@id': '/targets/unc-42-celegans/', 'title': 'unc-42 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0cb669a4-5952-4528-8e31-902758bb3b48', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF695RVC/ 867788088 Kevin White, UChicago 4999f2a172d05bf7e899cc36948bb1f9 https://www.encodeproject.org/files/ENCFF543EMI/@@download/ENCFF543EMI.bam released s3://encode-public/2015/08/07/8e9f3fec-8c33-4632-aafb-0d83a73ff3f3/ENCFF543EMI.bam Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, mild to moderate bottlenecking ENCFF059GHJ bigWig bigWig read-depth normalized signal ce10 ENCSR918WXD Control ChIP-seq /worm-donors/ENCDO285LJA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192081/'], '@type': ['Target', 'Item'], 'name': 'unc-42-celegans', 'label': 'unc-42', '@id': '/targets/unc-42-celegans/', 'title': 'unc-42 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0cb669a4-5952-4528-8e31-902758bb3b48', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF543EMI/ 9958696 Kevin White, UChicago 79786b51efdbecb21ee99c45b0a8243b https://www.encodeproject.org/files/ENCFF059GHJ/@@download/ENCFF059GHJ.bigWig released s3://encode-public/2015/10/02/bac4163f-bf74-46a3-b5b1-36e9c7e6385b/ENCFF059GHJ.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, mild to moderate bottlenecking ENCFF953NMS bigWig bigWig signal of unique reads ce10 ENCSR918WXD Control ChIP-seq /worm-donors/ENCDO285LJA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192081/'], '@type': ['Target', 'Item'], 'name': 'unc-42-celegans', 'label': 'unc-42', '@id': '/targets/unc-42-celegans/', 'title': 'unc-42 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0cb669a4-5952-4528-8e31-902758bb3b48', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF543EMI/ 9955800 Kevin White, UChicago 0f3c9aee5bb946582ff420dd42f06bfa https://www.encodeproject.org/files/ENCFF953NMS/@@download/ENCFF953NMS.bigWig released s3://encode-public/2015/10/02/8216d24f-82ff-444e-bfc1-a6c1d8db8038/ENCFF953NMS.bigWig Lab custom ce10 archived missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, mild to moderate bottlenecking ENCFF481GYB bam bam alignments ce11 ENCSR918WXD Control ChIP-seq /worm-donors/ENCDO285LJA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192081/'], '@type': ['Target', 'Item'], 'name': 'unc-42-celegans', 'label': 'unc-42', '@id': '/targets/unc-42-celegans/', 'title': 'unc-42 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0cb669a4-5952-4528-8e31-902758bb3b48', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF695RVC/ 868538799 Kevin White, UChicago 815927b53d7a59d0ebd9b352de1546f0 https://www.encodeproject.org/files/ENCFF481GYB/@@download/ENCFF481GYB.bam released s3://encode-public/2016/01/20/dc32f502-dd79-493c-9b07-40efbb5f1319/ENCFF481GYB.bam Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, mild to moderate bottlenecking ENCFF218ZZB bigWig bigWig signal of unique reads ce11 ENCSR918WXD Control ChIP-seq /worm-donors/ENCDO285LJA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192081/'], '@type': ['Target', 'Item'], 'name': 'unc-42-celegans', 'label': 'unc-42', '@id': '/targets/unc-42-celegans/', 'title': 'unc-42 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0cb669a4-5952-4528-8e31-902758bb3b48', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF481GYB/ 9951601 Kevin White, UChicago f7bc493dd90c80ad468a9d5a5e7d1b4b https://www.encodeproject.org/files/ENCFF218ZZB/@@download/ENCFF218ZZB.bigWig released s3://encode-public/2016/02/03/2baa750f-bd09-473e-b5e9-0b29710efc2f/ENCFF218ZZB.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, mild to moderate bottlenecking ENCFF706MVD bigWig bigWig read-depth normalized signal ce11 ENCSR918WXD Control ChIP-seq /worm-donors/ENCDO285LJA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/192081/'], '@type': ['Target', 'Item'], 'name': 'unc-42-celegans', 'label': 'unc-42', '@id': '/targets/unc-42-celegans/', 'title': 'unc-42 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0cb669a4-5952-4528-8e31-902758bb3b48', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF481GYB/ 9948641 Kevin White, UChicago 76900f54d6df2075b0f1646628f2b707 https://www.encodeproject.org/files/ENCFF706MVD/@@download/ENCFF706MVD.bigWig released s3://encode-public/2016/02/03/d9f0851b-be41-4073-8b86-c7dccf3fd0fd/ENCFF706MVD.bigWig Lab custom ce11 released missing genotype, missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, mild to moderate bottlenecking ENCFF217QBT fastq fastq reads ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 142811019 Michael Snyder, Stanford 8214be520e9402bc76c3f3448b2858ab https://www.encodeproject.org/files/ENCFF217QBT/@@download/ENCFF217QBT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/1c521e20-54b9-4ef3-a619-d22325f85ee8/ENCFF217QBT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF194PJZ fastq fastq reads ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 132584491 Michael Snyder, Stanford cbea766730db891c16b56c16ac310961 https://www.encodeproject.org/files/ENCFF194PJZ/@@download/ENCFF194PJZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/5d44bf07-85bf-437e-b111-1b80bd5acaf1/ENCFF194PJZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF806FED fastq fastq reads ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 133275089 Michael Snyder, Stanford be92503c79dc124264b7a0f7a1f63fba https://www.encodeproject.org/files/ENCFF806FED/@@download/ENCFF806FED.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/208443a2-75e7-420d-997b-35159b047ae4/ENCFF806FED.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF992VAD bam bam alignments ce10 ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF217QBT/, /files/ENCFF194PJZ/, /files/ENCFF806FED/, /files/ENCFF987UMF/ 437797941 Kevin White, UChicago 7c3c52c4a0657fce38a9328ee4db6e61 https://www.encodeproject.org/files/ENCFF992VAD/@@download/ENCFF992VAD.bam released s3://encode-public/2017/04/27/e5d72d3f-2130-4ab8-94cb-ce11a528dba0/ENCFF992VAD.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF783GMB bam bam alignments ce11 ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF217QBT/, /files/ENCFF194PJZ/, /files/ENCFF806FED/, /files/ENCFF586MOL/ 438101105 Kevin White, UChicago c9b8028f1d81e2f9e0fea130106b503c https://www.encodeproject.org/files/ENCFF783GMB/@@download/ENCFF783GMB.bam released s3://encode-public/2017/04/27/7bf5094a-1d0d-4673-b90b-21c8d6b3909b/ENCFF783GMB.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF584GUH bigWig bigWig read-depth normalized signal ce10 ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF992VAD/ 9982062 Kevin White, UChicago 3bdccf3e3ac53af37e87f34c580bd870 https://www.encodeproject.org/files/ENCFF584GUH/@@download/ENCFF584GUH.bigWig released s3://encode-public/2017/04/29/3514c852-2714-4d74-b638-8ef5bf65c605/ENCFF584GUH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF935MTA bigWig bigWig signal of unique reads ce10 ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF992VAD/ 9966178 Kevin White, UChicago d7c02c9718cf5e6a21e071f9d11a3333 https://www.encodeproject.org/files/ENCFF935MTA/@@download/ENCFF935MTA.bigWig released s3://encode-public/2017/04/29/c2e40071-6de1-4bde-9f97-d9655050e0bd/ENCFF935MTA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF740ZAK bigWig bigWig read-depth normalized signal ce11 ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF783GMB/ 9980548 Kevin White, UChicago cb1651963195ba61a3cf95dbe4b2e6d0 https://www.encodeproject.org/files/ENCFF740ZAK/@@download/ENCFF740ZAK.bigWig released s3://encode-public/2017/04/29/4124c722-6ec7-494e-bd15-b91ebe5622c3/ENCFF740ZAK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF325ADL bigWig bigWig signal of unique reads ce11 ENCSR131UVY Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF783GMB/ 9962187 Kevin White, UChicago 2f5fb363b107c64967d8965530b7d41a https://www.encodeproject.org/files/ENCFF325ADL/@@download/ENCFF325ADL.bigWig released s3://encode-public/2017/04/29/050c2740-b4c2-4bf7-b21e-6803d840933c/ENCFF325ADL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF891XTD fastq fastq reads ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 174100505 Michael Snyder, Stanford 22ac4f39366a24e2354a0b798c32d2ba https://www.encodeproject.org/files/ENCFF891XTD/@@download/ENCFF891XTD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/592c1c3a-f7fa-4762-8610-70813eb1be95/ENCFF891XTD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF157LEC fastq fastq reads ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 193992129 Michael Snyder, Stanford 6d5d4520a39e5d01113814fa8768ba89 https://www.encodeproject.org/files/ENCFF157LEC/@@download/ENCFF157LEC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/4581762c-7624-434f-8a91-bd29c278fecb/ENCFF157LEC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF974WXQ bam bam alignments ce10 ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF157LEC/, /files/ENCFF891XTD/, /files/ENCFF987UMF/ 443006608 Kevin White, UChicago 8d5aff956c93cc7eb4854c40a13234be https://www.encodeproject.org/files/ENCFF974WXQ/@@download/ENCFF974WXQ.bam released s3://encode-public/2017/04/27/5318424d-cb30-4d7e-b945-a1b9d32a2454/ENCFF974WXQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF549TYP bam bam alignments ce11 ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF157LEC/, /files/ENCFF891XTD/, /files/ENCFF586MOL/ 443424038 Kevin White, UChicago 14d6c33a3551aa0ed1ce02ba4c6d7d76 https://www.encodeproject.org/files/ENCFF549TYP/@@download/ENCFF549TYP.bam released s3://encode-public/2017/04/27/743c94b2-235f-48dd-8719-b0855abecaf9/ENCFF549TYP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF674IAZ bigWig bigWig signal of unique reads ce10 ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF974WXQ/ 10050843 Kevin White, UChicago 937a0251584d1584ba2398ae8d34162e https://www.encodeproject.org/files/ENCFF674IAZ/@@download/ENCFF674IAZ.bigWig released s3://encode-public/2017/04/29/cda2d3f4-2ed4-47fd-80e8-605c1aa50db0/ENCFF674IAZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF165CLJ bigWig bigWig read-depth normalized signal ce10 ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF974WXQ/ 9994858 Kevin White, UChicago d4bd5258a37ed7120aab5931da99477c https://www.encodeproject.org/files/ENCFF165CLJ/@@download/ENCFF165CLJ.bigWig released s3://encode-public/2017/04/29/b848a77c-64c3-467a-b5a3-d3daf4781cfd/ENCFF165CLJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF195WZB bigWig bigWig read-depth normalized signal ce11 ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF549TYP/ 9994307 Kevin White, UChicago 54fe6c546bf464c0e95e98afd6d7f265 https://www.encodeproject.org/files/ENCFF195WZB/@@download/ENCFF195WZB.bigWig released s3://encode-public/2017/04/29/9e2819cf-9e1e-4f58-b243-ce54390a1fea/ENCFF195WZB.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF155HAN bigWig bigWig signal of unique reads ce11 ENCSR040DPF Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF549TYP/ 10049358 Kevin White, UChicago 281a35aac1735bcc896d1dbabe21a4be https://www.encodeproject.org/files/ENCFF155HAN/@@download/ENCFF155HAN.bigWig released s3://encode-public/2017/04/29/b2cf004c-7ad5-4802-9d31-185e901830f8/ENCFF155HAN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF233DYZ fastq fastq reads ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 169689141 Michael Snyder, Stanford 73ae0bb3aa8c138f4763ea47fe1a3b37 https://www.encodeproject.org/files/ENCFF233DYZ/@@download/ENCFF233DYZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/d10fa7e1-ddf5-4da3-84e2-40c7178b9c18/ENCFF233DYZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF033FNK fastq fastq reads ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 202094918 Michael Snyder, Stanford fe2297c0d4ff085f3254830af07053a8 https://www.encodeproject.org/files/ENCFF033FNK/@@download/ENCFF033FNK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/51524924-84d0-409d-94a3-c97a4b93a329/ENCFF033FNK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF390WQY bigWig bigWig read-depth normalized signal ce10 ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF136NQG/ 10018681 Kevin White, UChicago 6aba2f7771ae0ab9c182f2847523746f https://www.encodeproject.org/files/ENCFF390WQY/@@download/ENCFF390WQY.bigWig released s3://encode-public/2017/05/05/1b80c3e2-da55-4b68-a044-e865bd8b5f53/ENCFF390WQY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF683UPJ bigWig bigWig signal of unique reads ce10 ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF136NQG/ 10010106 Kevin White, UChicago 0ba1f63324219662d65262593f965d0f https://www.encodeproject.org/files/ENCFF683UPJ/@@download/ENCFF683UPJ.bigWig released s3://encode-public/2017/05/05/cbae7a3e-790e-4f2e-86b8-533edeb97538/ENCFF683UPJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF258ZXW bam bam alignments ce11 ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF233DYZ/, /files/ENCFF033FNK/, /files/ENCFF586MOL/ 476757802 Kevin White, UChicago bee58407acd57b48072eb8c9c1d2aaa9 https://www.encodeproject.org/files/ENCFF258ZXW/@@download/ENCFF258ZXW.bam released s3://encode-public/2018/01/05/d2614c64-0b7c-42d7-8c64-ef6645bd8d68/ENCFF258ZXW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF136NQG bam bam alignments ce10 ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF233DYZ/, /files/ENCFF033FNK/, /files/ENCFF987UMF/ 476318973 Kevin White, UChicago ebbd0c38955790741b20beccb44b8393 https://www.encodeproject.org/files/ENCFF136NQG/@@download/ENCFF136NQG.bam released s3://encode-public/2018/01/05/fc1e9b48-eb9c-4c4b-b3f7-46e4a256593e/ENCFF136NQG.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF505EVC bigWig bigWig read-depth normalized signal ce11 ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF258ZXW/ 10018902 Kevin White, UChicago 09766ccfbca9f1b075021f8fb18dad70 https://www.encodeproject.org/files/ENCFF505EVC/@@download/ENCFF505EVC.bigWig released s3://encode-public/2018/01/22/f933a9eb-fba4-46f5-8356-d4b4746675a5/ENCFF505EVC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF292KYM bigWig bigWig signal of unique reads ce11 ENCSR347VEI Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF258ZXW/ 10009357 Kevin White, UChicago a884dd2e0beb5dc305734134a575575b https://www.encodeproject.org/files/ENCFF292KYM/@@download/ENCFF292KYM.bigWig released s3://encode-public/2018/01/22/1e140a1b-225e-4a77-a8f7-594392a47b03/ENCFF292KYM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF965ZTJ fastq fastq reads ENCSR506NPV Control ChIP-seq /fly-donors/ENCDO828JNN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35901/'], '@type': ['Target', 'Item'], 'name': 'spab-dmelanogaster', 'label': 'spab', '@id': '/targets/spab-dmelanogaster/', 'title': 'spab (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'aac392fe-16e3-4521-bc66-a11e15e23af4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 552719259 Kevin White, UChicago f5144d7fc01ed56da6ac8e401a21bee5 https://www.encodeproject.org/files/ENCFF965ZTJ/@@download/ENCFF965ZTJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/0d08ecbf-847c-4dd2-bf92-320fcd4a1137/ENCFF965ZTJ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF554TZX bam bam alignments dm3 ENCSR506NPV Control ChIP-seq /fly-donors/ENCDO828JNN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35901/'], '@type': ['Target', 'Item'], 'name': 'spab-dmelanogaster', 'label': 'spab', '@id': '/targets/spab-dmelanogaster/', 'title': 'spab (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'aac392fe-16e3-4521-bc66-a11e15e23af4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF965ZTJ/ 739386496 Kevin White, UChicago 1d2744276d09638928e08e43faec60e1 https://www.encodeproject.org/files/ENCFF554TZX/@@download/ENCFF554TZX.bam released s3://encode-public/2017/09/12/797789d0-0f18-45ce-8f41-ec49cd296aef/ENCFF554TZX.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF045RYF bam bam alignments dm6 ENCSR506NPV Control ChIP-seq /fly-donors/ENCDO828JNN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35901/'], '@type': ['Target', 'Item'], 'name': 'spab-dmelanogaster', 'label': 'spab', '@id': '/targets/spab-dmelanogaster/', 'title': 'spab (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'aac392fe-16e3-4521-bc66-a11e15e23af4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF965ZTJ/ 734259029 Kevin White, UChicago 42b3afc1a45c353d3b2797f1e035fcdf https://www.encodeproject.org/files/ENCFF045RYF/@@download/ENCFF045RYF.bam released s3://encode-public/2017/09/13/5a5280f7-e48c-48b4-afe9-3c47d7c6274b/ENCFF045RYF.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF119TWU bigWig bigWig read-depth normalized signal dm3 ENCSR506NPV Control ChIP-seq /fly-donors/ENCDO828JNN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35901/'], '@type': ['Target', 'Item'], 'name': 'spab-dmelanogaster', 'label': 'spab', '@id': '/targets/spab-dmelanogaster/', 'title': 'spab (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'aac392fe-16e3-4521-bc66-a11e15e23af4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF554TZX/ 15289311 Kevin White, UChicago 6a6334678966fa33ca90b805c47fb120 https://www.encodeproject.org/files/ENCFF119TWU/@@download/ENCFF119TWU.bigWig released s3://encode-public/2017/09/13/939fbc55-b435-4f36-9e90-a02dff7ae794/ENCFF119TWU.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF948TTX bigWig bigWig signal of unique reads dm3 ENCSR506NPV Control ChIP-seq /fly-donors/ENCDO828JNN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35901/'], '@type': ['Target', 'Item'], 'name': 'spab-dmelanogaster', 'label': 'spab', '@id': '/targets/spab-dmelanogaster/', 'title': 'spab (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'aac392fe-16e3-4521-bc66-a11e15e23af4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF554TZX/ 15280799 Kevin White, UChicago fbde36fa3ea203b86ba649d958d18180 https://www.encodeproject.org/files/ENCFF948TTX/@@download/ENCFF948TTX.bigWig released s3://encode-public/2017/09/13/c97258d3-be9f-4f6f-a1bb-4ab5cba36953/ENCFF948TTX.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF869MTF bigWig bigWig signal of unique reads dm6 ENCSR506NPV Control ChIP-seq /fly-donors/ENCDO828JNN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35901/'], '@type': ['Target', 'Item'], 'name': 'spab-dmelanogaster', 'label': 'spab', '@id': '/targets/spab-dmelanogaster/', 'title': 'spab (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'aac392fe-16e3-4521-bc66-a11e15e23af4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF045RYF/ 17471895 Kevin White, UChicago 09d2e354e944ab951ffe8763f4aecf6f https://www.encodeproject.org/files/ENCFF869MTF/@@download/ENCFF869MTF.bigWig released s3://encode-public/2017/09/14/b5ecb203-36ba-476d-8b81-08c22d6a31ad/ENCFF869MTF.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF434DBQ bigWig bigWig read-depth normalized signal dm6 ENCSR506NPV Control ChIP-seq /fly-donors/ENCDO828JNN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35901/'], '@type': ['Target', 'Item'], 'name': 'spab-dmelanogaster', 'label': 'spab', '@id': '/targets/spab-dmelanogaster/', 'title': 'spab (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'aac392fe-16e3-4521-bc66-a11e15e23af4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF045RYF/ 17489982 Kevin White, UChicago 30a5918c2da1f9befd41e1684fcaae42 https://www.encodeproject.org/files/ENCFF434DBQ/@@download/ENCFF434DBQ.bigWig released s3://encode-public/2017/09/14/a0cf3ef8-ad75-4052-9bba-3516e48582c9/ENCFF434DBQ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF644TSR fastq fastq reads ENCSR042UCB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF814DEV/ 2689169477 Michael Snyder, Stanford ff0ed6c2b639a0db05868f0a30aa5cff SRA:SRR14636609 https://www.encodeproject.org/files/ENCFF644TSR/@@download/ENCFF644TSR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/eed0a326-ac57-4bf3-b349-dca3ed332e84/ENCFF644TSR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF814DEV fastq fastq reads ENCSR042UCB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF644TSR/ 2469694352 Michael Snyder, Stanford af36b42fe6acd079f995645f28833878 SRA:SRR14636609 https://www.encodeproject.org/files/ENCFF814DEV/@@download/ENCFF814DEV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/41a43ce2-c5ab-4469-8b87-c1ae270d7a4f/ENCFF814DEV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF319XUD bam bam alignments GRCh38 ENCSR042UCB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF814DEV/, /files/ENCFF644TSR/ 2646249874 ENCODE Processing Pipeline 6e346ecbf5e4fed65657cc85bf94e83d https://www.encodeproject.org/files/ENCFF319XUD/@@download/ENCFF319XUD.bam released s3://encode-public/2020/04/21/bf6e4166-8b0b-4e6b-9372-e9fb723781c9/ENCFF319XUD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF787ZGV bam bam unfiltered alignments GRCh38 ENCSR042UCB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF814DEV/, /files/ENCFF644TSR/ 4756486510 ENCODE Processing Pipeline 3fda7cff9a71b270eeff19eb34c9d899 https://www.encodeproject.org/files/ENCFF787ZGV/@@download/ENCFF787ZGV.bam released s3://encode-public/2020/04/21/c4e0b333-0f3b-4ce7-a765-5aecb47a154a/ENCFF787ZGV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF752YQY fastq fastq reads ENCSR906GHW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF956FIL/ 2404406259 Michael Snyder, Stanford 06233492295c84236e23aef0964fee6f SRA:SRR14834780 https://www.encodeproject.org/files/ENCFF752YQY/@@download/ENCFF752YQY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/23/488b57c6-ab62-4291-89b0-abe2bedfff91/ENCFF752YQY.fastq.gz ENCFF956FIL fastq fastq reads ENCSR906GHW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF752YQY/ 3167848277 Michael Snyder, Stanford 4e4d5dcd8cc6d42377db20b9a61c8bae SRA:SRR14834780 https://www.encodeproject.org/files/ENCFF956FIL/@@download/ENCFF956FIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/23/958f11ac-6663-48dc-b470-c7c99756ad7d/ENCFF956FIL.fastq.gz ENCFF017TUJ bam bam unfiltered alignments GRCh38 ENCSR906GHW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF752YQY/, /files/ENCFF956FIL/ 5828121003 ENCODE Processing Pipeline fc45ba0c967150e217e4e358101beb41 https://www.encodeproject.org/files/ENCFF017TUJ/@@download/ENCFF017TUJ.bam released s3://encode-public/2020/05/15/2033bb73-c39f-4730-a221-a4e84bd88ef7/ENCFF017TUJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF252FGA bam bam alignments GRCh38 ENCSR906GHW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF752YQY/, /files/ENCFF956FIL/ 4295258094 ENCODE Processing Pipeline b2a019d3548417ae226ed37579bb4d18 https://www.encodeproject.org/files/ENCFF252FGA/@@download/ENCFF252FGA.bam released s3://encode-public/2020/05/15/0b27219d-27e0-4963-8c2e-9262f5ecc011/ENCFF252FGA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF957CCU fastq fastq reads ENCSR540RTZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1238'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54796/'], '@type': ['Target', 'Item'], 'name': 'BNC2-human', 'label': 'BNC2', '@id': '/targets/BNC2-human/', 'title': 'BNC2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76b94a40-8ea6-4b7c-88ab-0f076db45d74', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF109TIF/ 1800860493 Michael Snyder, Stanford 93c812a9c65434224307b1c29fd9512c SRA:SRR14636405 https://www.encodeproject.org/files/ENCFF957CCU/@@download/ENCFF957CCU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/889eb08c-ff29-4c75-8f61-8896ccebefe5/ENCFF957CCU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF109TIF fastq fastq reads ENCSR540RTZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1238'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54796/'], '@type': ['Target', 'Item'], 'name': 'BNC2-human', 'label': 'BNC2', '@id': '/targets/BNC2-human/', 'title': 'BNC2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76b94a40-8ea6-4b7c-88ab-0f076db45d74', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF957CCU/ 1539508200 Michael Snyder, Stanford 76345156d7e5a43b73143e3c5aa2924f SRA:SRR14636405 https://www.encodeproject.org/files/ENCFF109TIF/@@download/ENCFF109TIF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/e0683122-021e-410f-a563-b9b10e74512c/ENCFF109TIF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF581RIG fastq fastq reads ENCSR540RTZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1238'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54796/'], '@type': ['Target', 'Item'], 'name': 'BNC2-human', 'label': 'BNC2', '@id': '/targets/BNC2-human/', 'title': 'BNC2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76b94a40-8ea6-4b7c-88ab-0f076db45d74', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF119JEY/ 2512273685 Michael Snyder, Stanford 2ea63f4eed5f6fce1ef6a4c2d1b9a784 SRA:SRR14636406 https://www.encodeproject.org/files/ENCFF581RIG/@@download/ENCFF581RIG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/05/12/2007dddb-e448-48e8-b116-21822567e556/ENCFF581RIG.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF119JEY fastq fastq reads ENCSR540RTZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1238'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54796/'], '@type': ['Target', 'Item'], 'name': 'BNC2-human', 'label': 'BNC2', '@id': '/targets/BNC2-human/', 'title': 'BNC2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76b94a40-8ea6-4b7c-88ab-0f076db45d74', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF581RIG/ 2336336617 Michael Snyder, Stanford fefc7839322ad46536a61600f930d570 SRA:SRR14636406 https://www.encodeproject.org/files/ENCFF119JEY/@@download/ENCFF119JEY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/05/12/4d1cbefd-84cc-4a87-acbc-6408d30f9f39/ENCFF119JEY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF120VBD bam bam alignments GRCh38 ENCSR540RTZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1238'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54796/'], '@type': ['Target', 'Item'], 'name': 'BNC2-human', 'label': 'BNC2', '@id': '/targets/BNC2-human/', 'title': 'BNC2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76b94a40-8ea6-4b7c-88ab-0f076db45d74', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF109TIF/, /files/ENCFF119JEY/, /files/ENCFF957CCU/, /files/ENCFF581RIG/ 4873752035 ENCODE Processing Pipeline d4ccc84bc438d44bd0b726accf516605 https://www.encodeproject.org/files/ENCFF120VBD/@@download/ENCFF120VBD.bam released s3://encode-public/2020/05/15/cbd5c928-ad2e-43e2-9c61-39cf49bc7197/ENCFF120VBD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF545OEG bam bam unfiltered alignments GRCh38 ENCSR540RTZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1238'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54796/'], '@type': ['Target', 'Item'], 'name': 'BNC2-human', 'label': 'BNC2', '@id': '/targets/BNC2-human/', 'title': 'BNC2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '76b94a40-8ea6-4b7c-88ab-0f076db45d74', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF109TIF/, /files/ENCFF119JEY/, /files/ENCFF957CCU/, /files/ENCFF581RIG/ 7051731583 ENCODE Processing Pipeline 54598edd525782e8b5106e4e3f18a399 https://www.encodeproject.org/files/ENCFF545OEG/@@download/ENCFF545OEG.bam released s3://encode-public/2020/05/15/25729496-7456-4419-ad17-e31c1f6b898e/ENCFF545OEG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF209YRE fastq fastq reads ENCSR004LZA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10362/'], '@type': ['Target', 'Item'], 'name': 'HMG20B-human', 'label': 'HMG20B', '@id': '/targets/HMG20B-human/', 'title': 'HMG20B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '937634b2-d3af-4a00-8f83-9dcbabd29fed', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF708DJB/ 2524250000 Michael Snyder, Stanford 21a011307ee06bac9c0d8960ee01b41c SRA:SRR14848374 https://www.encodeproject.org/files/ENCFF209YRE/@@download/ENCFF209YRE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/01/568cae56-5cab-4d2a-921a-dc8e7f4f66ff/ENCFF209YRE.fastq.gz mild to moderate bottlenecking ENCFF708DJB fastq fastq reads ENCSR004LZA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10362/'], '@type': ['Target', 'Item'], 'name': 'HMG20B-human', 'label': 'HMG20B', '@id': '/targets/HMG20B-human/', 'title': 'HMG20B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '937634b2-d3af-4a00-8f83-9dcbabd29fed', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF209YRE/ 3110394672 Michael Snyder, Stanford e4201ac8be6c0ffa19ff29d977a687a4 SRA:SRR14848374 https://www.encodeproject.org/files/ENCFF708DJB/@@download/ENCFF708DJB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/01/91a75ed6-c216-4d7d-abde-f50796cdbdfa/ENCFF708DJB.fastq.gz mild to moderate bottlenecking ENCFF690JEF bam bam unfiltered alignments GRCh38 ENCSR004LZA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10362/'], '@type': ['Target', 'Item'], 'name': 'HMG20B-human', 'label': 'HMG20B', '@id': '/targets/HMG20B-human/', 'title': 'HMG20B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '937634b2-d3af-4a00-8f83-9dcbabd29fed', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF209YRE/, /files/ENCFF708DJB/ 5518198276 ENCODE Processing Pipeline 3a10b944436720f37643158f5ade6832 https://www.encodeproject.org/files/ENCFF690JEF/@@download/ENCFF690JEF.bam released s3://encode-public/2020/05/11/66929388-cc7f-4476-b3d4-3f99ebacff29/ENCFF690JEF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF722OII bam bam alignments GRCh38 ENCSR004LZA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10362/'], '@type': ['Target', 'Item'], 'name': 'HMG20B-human', 'label': 'HMG20B', '@id': '/targets/HMG20B-human/', 'title': 'HMG20B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '937634b2-d3af-4a00-8f83-9dcbabd29fed', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF209YRE/, /files/ENCFF708DJB/ 4007616944 ENCODE Processing Pipeline 60b5320276cde018c7010b891b00eb3e https://www.encodeproject.org/files/ENCFF722OII/@@download/ENCFF722OII.bam released s3://encode-public/2020/05/11/4365753e-7baa-402a-8467-5fc4a44d8b96/ENCFF722OII.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF321BXV fastq fastq reads ENCSR984XPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1155'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57567/'], '@type': ['Target', 'Item'], 'name': 'ZNF319-human', 'label': 'ZNF319', '@id': '/targets/ZNF319-human/', 'title': 'ZNF319 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39d61b85-16f9-448d-b1ab-4b91e47626bd', 'status': 'released'} DNA 2022-02-17 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF625GDY/ 2279279316 Michael Snyder, Stanford 5ed2137ab0ba39e3fd19cad8b2b7820c https://www.encodeproject.org/files/ENCFF321BXV/@@download/ENCFF321BXV.fastq.gz Illumina HiSeq 4000 /files/ENCFF301IUQ/ released s3://encode-public/2019/01/08/3ea8cb60-17db-4285-9bff-98bc4fb725cf/ENCFF321BXV.fastq.gz ENCFF625GDY fastq fastq reads ENCSR984XPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1155'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57567/'], '@type': ['Target', 'Item'], 'name': 'ZNF319-human', 'label': 'ZNF319', '@id': '/targets/ZNF319-human/', 'title': 'ZNF319 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39d61b85-16f9-448d-b1ab-4b91e47626bd', 'status': 'released'} DNA 2022-02-17 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF321BXV/ 2598663807 Michael Snyder, Stanford eea28d05065e768aa01972afb3d2766b https://www.encodeproject.org/files/ENCFF625GDY/@@download/ENCFF625GDY.fastq.gz Illumina HiSeq 4000 /files/ENCFF854PPV/ released s3://encode-public/2019/01/08/de569d41-450d-4dab-994d-9ec80084a13f/ENCFF625GDY.fastq.gz ENCFF303IBZ bam bam unfiltered alignments GRCh38 ENCSR984XPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1155'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57567/'], '@type': ['Target', 'Item'], 'name': 'ZNF319-human', 'label': 'ZNF319', '@id': '/targets/ZNF319-human/', 'title': 'ZNF319 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39d61b85-16f9-448d-b1ab-4b91e47626bd', 'status': 'released'} DNA 2022-02-17 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF321BXV/, /files/ENCFF625GDY/ 4951902388 ENCODE Processing Pipeline ef78be44f9fde28c4ec4073a91b00f52 https://www.encodeproject.org/files/ENCFF303IBZ/@@download/ENCFF303IBZ.bam released s3://encode-public/2020/05/15/bf978314-b8cf-4ac3-b1dd-e264b66ca3e7/ENCFF303IBZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF738HLP bam bam alignments GRCh38 ENCSR984XPC Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1155'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57567/'], '@type': ['Target', 'Item'], 'name': 'ZNF319-human', 'label': 'ZNF319', '@id': '/targets/ZNF319-human/', 'title': 'ZNF319 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '39d61b85-16f9-448d-b1ab-4b91e47626bd', 'status': 'released'} DNA 2022-02-17 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF321BXV/, /files/ENCFF625GDY/ 4020253875 ENCODE Processing Pipeline 6f5fa98d4de6cae23daa22d7a8512b8d https://www.encodeproject.org/files/ENCFF738HLP/@@download/ENCFF738HLP.bam released s3://encode-public/2020/05/15/832b7f11-b95a-4225-a066-b53fe42f46c4/ENCFF738HLP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF124ZWS fastq fastq reads ENCSR079ERM Control ChIP-seq /fly-donors/ENCDO330VDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42547/'], '@type': ['Target', 'Item'], 'name': 'slou-dmelanogaster', 'label': 'slou', '@id': '/targets/slou-dmelanogaster/', 'title': 'slou (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14d3704a-250f-4e10-9602-a6f24fe2f14b', 'status': 'released'} dm3 3R 17349432 17402516 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 636918616 Kevin White, UChicago 607f7e1a06bb89760b5074cb45e75113 https://www.encodeproject.org/files/ENCFF124ZWS/@@download/ENCFF124ZWS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/c19930bf-400e-4ce1-a5de-d627c11d3563/ENCFF124ZWS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF163TFM bam bam alignments dm3 ENCSR079ERM Control ChIP-seq /fly-donors/ENCDO330VDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42547/'], '@type': ['Target', 'Item'], 'name': 'slou-dmelanogaster', 'label': 'slou', '@id': '/targets/slou-dmelanogaster/', 'title': 'slou (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14d3704a-250f-4e10-9602-a6f24fe2f14b', 'status': 'released'} dm3 3R 17349432 17402516 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF124ZWS/ 783980913 Kevin White, UChicago c112239478e013249c29824d61a868d3 https://www.encodeproject.org/files/ENCFF163TFM/@@download/ENCFF163TFM.bam released s3://encode-public/2015/08/05/ec8dd752-2488-40fe-b54a-a9d07a183d77/ENCFF163TFM.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF025IKK bigWig bigWig read-depth normalized signal dm3 ENCSR079ERM Control ChIP-seq /fly-donors/ENCDO330VDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42547/'], '@type': ['Target', 'Item'], 'name': 'slou-dmelanogaster', 'label': 'slou', '@id': '/targets/slou-dmelanogaster/', 'title': 'slou (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14d3704a-250f-4e10-9602-a6f24fe2f14b', 'status': 'released'} dm3 3R 17349432 17402516 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF163TFM/ 15402408 Kevin White, UChicago 15ac71f009761f2daf497872f74bd756 https://www.encodeproject.org/files/ENCFF025IKK/@@download/ENCFF025IKK.bigWig released s3://encode-public/2015/10/07/dc38b9f4-e790-4ed9-adee-d1b16447e426/ENCFF025IKK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF053CKP bigWig bigWig signal of unique reads dm3 ENCSR079ERM Control ChIP-seq /fly-donors/ENCDO330VDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42547/'], '@type': ['Target', 'Item'], 'name': 'slou-dmelanogaster', 'label': 'slou', '@id': '/targets/slou-dmelanogaster/', 'title': 'slou (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14d3704a-250f-4e10-9602-a6f24fe2f14b', 'status': 'released'} dm3 3R 17349432 17402516 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF163TFM/ 15339947 Kevin White, UChicago 1aa9f969e2e3e47ace696231cb2ed28b https://www.encodeproject.org/files/ENCFF053CKP/@@download/ENCFF053CKP.bigWig released s3://encode-public/2015/10/07/48e88888-8bc8-47e7-b685-ae741bb17e46/ENCFF053CKP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF914PVJ bam bam alignments dm6 ENCSR079ERM Control ChIP-seq /fly-donors/ENCDO330VDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42547/'], '@type': ['Target', 'Item'], 'name': 'slou-dmelanogaster', 'label': 'slou', '@id': '/targets/slou-dmelanogaster/', 'title': 'slou (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14d3704a-250f-4e10-9602-a6f24fe2f14b', 'status': 'released'} dm3 3R 17349432 17402516 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF124ZWS/ 781129367 Kevin White, UChicago 9b9711ec98520b99a14a80c37889291e https://www.encodeproject.org/files/ENCFF914PVJ/@@download/ENCFF914PVJ.bam released s3://encode-public/2016/04/22/ca45baa7-d6d8-4581-91db-3b748a5b496e/ENCFF914PVJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF658MPK bigWig bigWig signal of unique reads dm6 ENCSR079ERM Control ChIP-seq /fly-donors/ENCDO330VDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42547/'], '@type': ['Target', 'Item'], 'name': 'slou-dmelanogaster', 'label': 'slou', '@id': '/targets/slou-dmelanogaster/', 'title': 'slou (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14d3704a-250f-4e10-9602-a6f24fe2f14b', 'status': 'released'} dm3 3R 17349432 17402516 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF914PVJ/ 17419488 Kevin White, UChicago a90410c33c02ab024e959a81090b5a30 https://www.encodeproject.org/files/ENCFF658MPK/@@download/ENCFF658MPK.bigWig released s3://encode-public/2016/06/20/8afd1764-bcfa-4316-aeea-13223588ec12/ENCFF658MPK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF707TZH bigWig bigWig read-depth normalized signal dm6 ENCSR079ERM Control ChIP-seq /fly-donors/ENCDO330VDX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42547/'], '@type': ['Target', 'Item'], 'name': 'slou-dmelanogaster', 'label': 'slou', '@id': '/targets/slou-dmelanogaster/', 'title': 'slou (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '14d3704a-250f-4e10-9602-a6f24fe2f14b', 'status': 'released'} dm3 3R 17349432 17402516 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF914PVJ/ 17509619 Kevin White, UChicago 7fd4e0a8e60a99b149f9830b5e4763e4 https://www.encodeproject.org/files/ENCFF707TZH/@@download/ENCFF707TZH.bigWig released s3://encode-public/2016/06/20/7f47b85d-8676-4b5b-b1ec-98eaabf30a90/ENCFF707TZH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF930BJY fastq fastq reads ENCSR178GOM Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55422/'], '@type': ['Target', 'Item'], 'name': 'ZNF331-human', 'label': 'ZNF331', '@id': '/targets/ZNF331-human/', 'title': 'ZNF331 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98a933c-d8f4-4eb5-8ef4-770d52cc984b', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF997LHQ/ 2622407153 Michael Snyder, Stanford 540402af7ce41da22fb02b7eab3e3d7c https://www.encodeproject.org/files/ENCFF930BJY/@@download/ENCFF930BJY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/0b898b25-d2b9-452d-befa-1dae1293544c/ENCFF930BJY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF997LHQ fastq fastq reads ENCSR178GOM Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55422/'], '@type': ['Target', 'Item'], 'name': 'ZNF331-human', 'label': 'ZNF331', '@id': '/targets/ZNF331-human/', 'title': 'ZNF331 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98a933c-d8f4-4eb5-8ef4-770d52cc984b', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF930BJY/ 2824823740 Michael Snyder, Stanford 686437b3e228b8ed33a7830b8c0b5875 https://www.encodeproject.org/files/ENCFF997LHQ/@@download/ENCFF997LHQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/430ee182-af25-432d-bf7f-c7358511a3fc/ENCFF997LHQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF219JXL bam bam alignments GRCh38 ENCSR178GOM Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1223'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/55422/'], '@type': ['Target', 'Item'], 'name': 'ZNF331-human', 'label': 'ZNF331', '@id': '/targets/ZNF331-human/', 'title': 'ZNF331 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98a933c-d8f4-4eb5-8ef4-770d52cc984b', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF930BJY/, /files/ENCFF997LHQ/ 3066935563 ENCODE Processing Pipeline 2fcfdb3fd20ea50c0c812837296ff881 https://www.encodeproject.org/files/ENCFF219JXL/@@download/ENCFF219JXL.bam released s3://encode-public/2020/04/21/1f400bb8-4f88-468c-a0d8-b1a5645eed26/ENCFF219JXL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF323AVN bam bam unfiltered alignments GRCh38 ENCSR178GOM Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1223'], 'organism': {'schema_version': '6', 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ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 2642081712 Bradley Bernstein, Broad 08f676e3336a8c7774168682847f0a7d SRA:SRR10838258 https://www.encodeproject.org/files/ENCFF650QEJ/@@download/ENCFF650QEJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/35d04b87-b819-4878-b9ee-79729e5152df/ENCFF650QEJ.fastq.gz ENCFF417BHO fastq fastq reads ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 372121928 Bradley Bernstein, Broad 992d86e3b87afe562ca38dda2a602341 SRA:SRR10838256 https://www.encodeproject.org/files/ENCFF417BHO/@@download/ENCFF417BHO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/5ad79745-1b9a-45be-aad8-59f5b780b8d4/ENCFF417BHO.fastq.gz ENCFF741YPY fastq fastq reads ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_2 76 single-ended 371447674 Bradley Bernstein, Broad 3a11a4ac8037d639e0c435e2f0e30235 SRA:SRR10838257 https://www.encodeproject.org/files/ENCFF741YPY/@@download/ENCFF741YPY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/e01c0cc0-0e74-40d8-8e38-31108e57e7d5/ENCFF741YPY.fastq.gz ENCFF782IRK fastq fastq reads ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1 76 single-ended 2569780192 Bradley Bernstein, Broad 33117a83c43d9dd6d50f82385ffbf87a SRA:SRR10838259 https://www.encodeproject.org/files/ENCFF782IRK/@@download/ENCFF782IRK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2018/10/31/13ae4827-b1b2-43ad-ab2f-f7261130a21f/ENCFF782IRK.fastq.gz ENCFF992DZR bam bam alignments GRCh38 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF650QEJ/, /files/ENCFF741YPY/, /files/ENCFF417BHO/, /files/ENCFF782IRK/, /files/ENCFF643CGH/ 4503260527 ENCODE Processing Pipeline 7f6012fcc9c383f5d9c14303d994f0f7 https://www.encodeproject.org/files/ENCFF992DZR/@@download/ENCFF992DZR.bam released s3://encode-public/2018/11/27/f146a15d-526f-4918-8fc1-687f15b0f61e/ENCFF992DZR.bam ENCODE3 GRCh38 archived ENCFF200SGC bam bam unfiltered alignments GRCh38 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF650QEJ/, /files/ENCFF741YPY/, /files/ENCFF417BHO/, /files/ENCFF782IRK/, /files/ENCFF643CGH/ 5507078827 ENCODE Processing Pipeline 1fd8fd4867b89f4e8f2ebfad2aa58509 https://www.encodeproject.org/files/ENCFF200SGC/@@download/ENCFF200SGC.bam released s3://encode-public/2018/11/27/4da4f7a2-8858-492b-8f76-89063dd7a396/ENCFF200SGC.bam ENCODE3 GRCh38 archived ENCFF392DLE bam bam unfiltered alignments hg19 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF650QEJ/, /files/ENCFF741YPY/, /files/ENCFF417BHO/, /files/ENCFF807MUK/, /files/ENCFF782IRK/ 6103285754 ENCODE Processing Pipeline f94710cde1aeff21ec793f4cf20af409 https://www.encodeproject.org/files/ENCFF392DLE/@@download/ENCFF392DLE.bam archived s3://encode-public/2018/11/27/b7db02b9-df7a-4540-988a-7d2bf8e9dd77/ENCFF392DLE.bam ENCODE3 hg19 archived ENCFF692FZD bam bam alignments hg19 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF650QEJ/, /files/ENCFF741YPY/, /files/ENCFF417BHO/, /files/ENCFF807MUK/, /files/ENCFF782IRK/ 4497797940 ENCODE Processing Pipeline ec65092c40f40c7698fbb51588c6ab85 https://www.encodeproject.org/files/ENCFF692FZD/@@download/ENCFF692FZD.bam archived s3://encode-public/2018/11/27/3d466b41-484f-47bd-958e-c7d2e6faaa85/ENCFF692FZD.bam ENCODE3 hg19 archived ENCFF733UKS bam bam alignments hg19 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF650QEJ/, /files/ENCFF741YPY/, /files/ENCFF417BHO/, /files/ENCFF807MUK/, /files/ENCFF782IRK/ 4497797935 ENCODE Processing Pipeline 1a661f59b3867a26af56e0e7a0dff4ec https://www.encodeproject.org/files/ENCFF733UKS/@@download/ENCFF733UKS.bam released s3://encode-public/2019/07/25/eedbbc1d-0246-4fc2-a941-0094e180811f/ENCFF733UKS.bam ENCODE3 hg19 archived ENCFF896LWF bam bam unfiltered alignments hg19 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF650QEJ/, /files/ENCFF741YPY/, /files/ENCFF417BHO/, /files/ENCFF807MUK/, /files/ENCFF782IRK/ 5492787475 ENCODE Processing Pipeline 5c3c6fbe447bdbbad754ba236650b273 https://www.encodeproject.org/files/ENCFF896LWF/@@download/ENCFF896LWF.bam released s3://encode-public/2019/07/25/09c1f99e-76da-4c4c-901f-30fd3794cc73/ENCFF896LWF.bam ENCODE3 hg19 archived ENCFF562VKL bam bam unfiltered alignments GRCh38 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF782IRK/, /files/ENCFF417BHO/, /files/ENCFF650QEJ/, /files/ENCFF110MCL/, /files/ENCFF741YPY/ 5589462980 ENCODE Processing Pipeline c1813ed37c3e1aa8c58009e9169a2c20 https://www.encodeproject.org/files/ENCFF562VKL/@@download/ENCFF562VKL.bam released s3://encode-public/2020/09/19/3fa14745-60b1-4446-a9c1-0bd7f2d4d2e9/ENCFF562VKL.bam ENCODE4 v1.5.1 GRCh38 released ENCFF357XSQ bam bam alignments GRCh38 ENCSR700CAX Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0001150 body of pancreas tissue Homo sapiens DNA 2018-12-14 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF782IRK/, /files/ENCFF417BHO/, /files/ENCFF650QEJ/, /files/ENCFF110MCL/, /files/ENCFF741YPY/ 4549406318 ENCODE Processing Pipeline cdb0366dfa50dee9384ec4693d7dda03 https://www.encodeproject.org/files/ENCFF357XSQ/@@download/ENCFF357XSQ.bam released s3://encode-public/2020/09/19/e025d600-b7dd-43f2-849b-f8739d384bf2/ENCFF357XSQ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF275ERO fastq fastq reads ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 181559112 Michael Snyder, Stanford 0c0f73ff2cab73898afeaedbb14af46e https://www.encodeproject.org/files/ENCFF275ERO/@@download/ENCFF275ERO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/f469fe9b-d0fe-48c1-afc2-7cc1009e633c/ENCFF275ERO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF580URJ fastq fastq reads ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 195470252 Michael Snyder, Stanford 91855daad8f0f25a42830e1d340e9aa0 https://www.encodeproject.org/files/ENCFF580URJ/@@download/ENCFF580URJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/d5535aeb-3033-4cae-af69-b65308074f54/ENCFF580URJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF247MRG bam bam alignments ce10 ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF580URJ/, /files/ENCFF275ERO/, /files/ENCFF987UMF/ 489997309 Kevin White, UChicago ed3cfb885340ae14e2996d697dd7e47e https://www.encodeproject.org/files/ENCFF247MRG/@@download/ENCFF247MRG.bam released s3://encode-public/2017/04/27/ca5c96b5-7349-4561-8cd0-9f66fa3cfadc/ENCFF247MRG.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF801LPU bam bam alignments ce11 ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF580URJ/, /files/ENCFF275ERO/, /files/ENCFF586MOL/ 490519835 Kevin White, UChicago f68e5003f2d5c22d8b890ba7a088779f https://www.encodeproject.org/files/ENCFF801LPU/@@download/ENCFF801LPU.bam released s3://encode-public/2017/04/27/e2e8b282-0f13-434c-a49b-62fc96919e97/ENCFF801LPU.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF823TVK bigWig bigWig read-depth normalized signal ce10 ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF247MRG/ 10046078 Kevin White, UChicago 7605c82b1728cf1f83967815182222de https://www.encodeproject.org/files/ENCFF823TVK/@@download/ENCFF823TVK.bigWig released s3://encode-public/2017/04/29/95065868-bb03-40ca-b08e-144352d0d9d3/ENCFF823TVK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF758EBT bigWig bigWig signal of unique reads ce10 ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF247MRG/ 10000473 Kevin White, UChicago 4db1847e67d6c5de7c39d5ef44046935 https://www.encodeproject.org/files/ENCFF758EBT/@@download/ENCFF758EBT.bigWig released s3://encode-public/2017/04/29/29f3526a-eab5-4d6c-992b-8c465a07e63d/ENCFF758EBT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF749SEX bigWig bigWig signal of unique reads ce11 ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF801LPU/ 9996446 Kevin White, UChicago 55ebb6f3d90d1a9fa4d6fbce05272786 https://www.encodeproject.org/files/ENCFF749SEX/@@download/ENCFF749SEX.bigWig released s3://encode-public/2017/04/29/c668fbbe-551f-4e0e-bea8-dd4d35b2f209/ENCFF749SEX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF565NCM bigWig bigWig read-depth normalized signal ce11 ENCSR876GLE Control ChIP-seq /worm-donors/ENCDO592RBC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181581/'], '@type': ['Target', 'Item'], 'name': 'dmd-4-celegans', 'label': 'dmd-4', '@id': '/targets/dmd-4-celegans/', 'title': 'dmd-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2f1c6a01-f476-4ced-af73-558eb5b2e897', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF801LPU/ 10014243 Kevin White, UChicago f0b13ca40b5b2d23f54f02e35501a13f https://www.encodeproject.org/files/ENCFF565NCM/@@download/ENCFF565NCM.bigWig released s3://encode-public/2017/04/29/a5ae5db0-f39e-4b2e-b7fa-3a7403b7464d/ENCFF565NCM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF242KVC fastq fastq reads ENCSR212KSR Control ChIP-seq /fly-donors/ENCDO241FBQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31665/'], '@type': ['Target', 'Item'], 'name': 'brk-dmelanogaster', 'label': 'brk', '@id': '/targets/brk-dmelanogaster/', 'title': 'brk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '53f9f12f-ff30-400c-a07e-73c4aa2fdca1', 'status': 'released'} dm3 X 7146662 7244094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 953058445 Kevin White, UChicago c823403dac2809d22e61085f5d999f0f https://www.encodeproject.org/files/ENCFF242KVC/@@download/ENCFF242KVC.fastq.gz Illumina HiSeq 2000 /files/ENCFF507HHT/ released s3://encode-public/2015/07/23/89bb3c84-5d51-424b-a68e-c94031726278/ENCFF242KVC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF053WSS bam bam alignments dm3 ENCSR212KSR Control ChIP-seq /fly-donors/ENCDO241FBQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31665/'], '@type': ['Target', 'Item'], 'name': 'brk-dmelanogaster', 'label': 'brk', '@id': '/targets/brk-dmelanogaster/', 'title': 'brk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '53f9f12f-ff30-400c-a07e-73c4aa2fdca1', 'status': 'released'} dm3 X 7146662 7244094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF242KVC/ 1279875740 Kevin White, UChicago e649e96f13a404acada7835afcddbdbe https://www.encodeproject.org/files/ENCFF053WSS/@@download/ENCFF053WSS.bam released s3://encode-public/2015/08/03/50f5411d-984b-4403-8676-7dbc111f91a3/ENCFF053WSS.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF724CEV bigWig bigWig signal of unique reads dm3 ENCSR212KSR Control ChIP-seq /fly-donors/ENCDO241FBQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31665/'], '@type': ['Target', 'Item'], 'name': 'brk-dmelanogaster', 'label': 'brk', '@id': '/targets/brk-dmelanogaster/', 'title': 'brk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '53f9f12f-ff30-400c-a07e-73c4aa2fdca1', 'status': 'released'} dm3 X 7146662 7244094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF053WSS/ 15202700 Kevin White, UChicago 1c46c53ceaf986aefd3a1c6e8527a23f https://www.encodeproject.org/files/ENCFF724CEV/@@download/ENCFF724CEV.bigWig released s3://encode-public/2015/10/06/b18e2d18-4e92-46d7-b2d3-9dd11a92865d/ENCFF724CEV.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF131UKE bigWig bigWig read-depth normalized signal dm3 ENCSR212KSR Control ChIP-seq /fly-donors/ENCDO241FBQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31665/'], '@type': ['Target', 'Item'], 'name': 'brk-dmelanogaster', 'label': 'brk', '@id': '/targets/brk-dmelanogaster/', 'title': 'brk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '53f9f12f-ff30-400c-a07e-73c4aa2fdca1', 'status': 'released'} dm3 X 7146662 7244094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF053WSS/ 15200168 Kevin White, UChicago dd9f035db30c59e94d55130e1c2aa3a7 https://www.encodeproject.org/files/ENCFF131UKE/@@download/ENCFF131UKE.bigWig released s3://encode-public/2015/10/06/2a5c1d87-22a7-4379-a0a2-17df5988ae6a/ENCFF131UKE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF866LCK bam bam alignments dm6 ENCSR212KSR Control ChIP-seq /fly-donors/ENCDO241FBQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31665/'], '@type': ['Target', 'Item'], 'name': 'brk-dmelanogaster', 'label': 'brk', '@id': '/targets/brk-dmelanogaster/', 'title': 'brk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '53f9f12f-ff30-400c-a07e-73c4aa2fdca1', 'status': 'released'} dm3 X 7146662 7244094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF242KVC/ 1262935583 Kevin White, UChicago 17008fe401ac0f92c4b53aee84ea2b74 https://www.encodeproject.org/files/ENCFF866LCK/@@download/ENCFF866LCK.bam released s3://encode-public/2016/04/20/754b4348-2228-4eec-aa59-cea95337266c/ENCFF866LCK.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF432OZU bigWig bigWig read-depth normalized signal dm6 ENCSR212KSR Control ChIP-seq /fly-donors/ENCDO241FBQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31665/'], '@type': ['Target', 'Item'], 'name': 'brk-dmelanogaster', 'label': 'brk', '@id': '/targets/brk-dmelanogaster/', 'title': 'brk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '53f9f12f-ff30-400c-a07e-73c4aa2fdca1', 'status': 'released'} dm3 X 7146662 7244094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF866LCK/ 17275402 Kevin White, UChicago e6a4c261e5002a9e220d63f7feafb3fa https://www.encodeproject.org/files/ENCFF432OZU/@@download/ENCFF432OZU.bigWig released s3://encode-public/2016/06/21/e80a569f-081d-4c30-a69f-8e1094abc863/ENCFF432OZU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF184HLL bigWig bigWig signal of unique reads dm6 ENCSR212KSR Control ChIP-seq /fly-donors/ENCDO241FBQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31665/'], '@type': ['Target', 'Item'], 'name': 'brk-dmelanogaster', 'label': 'brk', '@id': '/targets/brk-dmelanogaster/', 'title': 'brk (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '53f9f12f-ff30-400c-a07e-73c4aa2fdca1', 'status': 'released'} dm3 X 7146662 7244094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF866LCK/ 17282382 Kevin White, UChicago 9bc78c1f95c821a0bcf7f36a145713ee https://www.encodeproject.org/files/ENCFF184HLL/@@download/ENCFF184HLL.bigWig released s3://encode-public/2016/06/21/53d89477-391f-4d0a-b546-7d5d12e43b73/ENCFF184HLL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF199IYX fastq fastq reads ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF747IKZ/ 1978018557 Michael Snyder, Stanford 96c8fa17b4c0f1f8f7c5203cbd055c4d SRA:SRR6213239 https://www.encodeproject.org/files/ENCFF199IYX/@@download/ENCFF199IYX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/06/83265295-cb66-4a06-ade8-ab05f2bbc006/ENCFF199IYX.fastq.gz ENCFF747IKZ fastq fastq reads ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF199IYX/ 2346740447 Michael Snyder, Stanford 42c3fc648f4029e3977c9ff157dc9e8d SRA:SRR6213239 https://www.encodeproject.org/files/ENCFF747IKZ/@@download/ENCFF747IKZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/06/c143105f-58ed-485a-86b3-cf5bd8178fe6/ENCFF747IKZ.fastq.gz ENCFF507YPD bam bam unfiltered alignments hg19 ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF199IYX/, /files/ENCFF747IKZ/, /files/ENCFF807MUK/ 4411605406 ENCODE Processing Pipeline fba677b81b99c36424ea125cdf6828f8 https://www.encodeproject.org/files/ENCFF507YPD/@@download/ENCFF507YPD.bam released s3://encode-public/2016/12/10/c7186a38-fefe-4ade-a509-d0b03e2f863e/ENCFF507YPD.bam ENCODE3 hg19 archived ENCFF744HKB bam bam alignments hg19 ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF199IYX/, /files/ENCFF747IKZ/, /files/ENCFF807MUK/ 3688811186 ENCODE Processing Pipeline 3379193ccd6b2514b74d0ebf01853246 https://www.encodeproject.org/files/ENCFF744HKB/@@download/ENCFF744HKB.bam released s3://encode-public/2016/12/10/3de824e2-9c5a-4260-bcd3-4c9148cd8cc8/ENCFF744HKB.bam ENCODE3 hg19 archived ENCFF196ZEA bam bam unfiltered alignments GRCh38 ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF199IYX/, /files/ENCFF747IKZ/, /files/ENCFF643CGH/ 4422425368 ENCODE Processing Pipeline bfbd55109bcc7ecdfdd91c9f847640d2 https://www.encodeproject.org/files/ENCFF196ZEA/@@download/ENCFF196ZEA.bam released s3://encode-public/2016/12/10/de5fc175-4eaa-4aea-9dae-a4a75524db1e/ENCFF196ZEA.bam ENCODE3 GRCh38 archived ENCFF621CXJ bam bam alignments GRCh38 ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 101 /files/ENCFF199IYX/, /files/ENCFF747IKZ/, /files/ENCFF643CGH/ 3693441629 ENCODE Processing Pipeline 6458bcc9ae4d34a1ad40c462b20d4c57 https://www.encodeproject.org/files/ENCFF621CXJ/@@download/ENCFF621CXJ.bam released s3://encode-public/2016/12/10/398a3f93-24af-4dc5-b7c2-be9b65fae3f1/ENCFF621CXJ.bam ENCODE3 GRCh38 archived ENCFF942WBK bam bam unfiltered alignments GRCh38 ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF199IYX/, /files/ENCFF747IKZ/ 4405104192 ENCODE Processing Pipeline 6c483e75a524413995bb0c6e88f0210f https://www.encodeproject.org/files/ENCFF942WBK/@@download/ENCFF942WBK.bam released s3://encode-public/2020/06/03/2e433e87-ca63-4eac-a26f-8d36cc2a9839/ENCFF942WBK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF742IFB bam bam alignments GRCh38 ENCSR336OPU Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2016-12-13 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF199IYX/, /files/ENCFF747IKZ/ 3639122857 ENCODE Processing Pipeline 3743ecb3212a542091846cfb65d7e677 https://www.encodeproject.org/files/ENCFF742IFB/@@download/ENCFF742IFB.bam released s3://encode-public/2020/06/03/5707b8ca-5a97-48b2-bd64-4d91861f2c3a/ENCFF742IFB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF260JTD fastq fastq reads ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 430550287 Bradley Bernstein, Broad f06980c98c2f1cac5160ee1a37eda18f SRA:SRR14104014 https://www.encodeproject.org/files/ENCFF260JTD/@@download/ENCFF260JTD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/802f7f0d-4e03-473b-88d8-07b2fb844629/ENCFF260JTD.fastq.gz ENCFF669VMZ fastq fastq reads ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 430182716 Bradley Bernstein, Broad 49805ca284bc15c96c57c617e2657ad8 SRA:SRR14104015 https://www.encodeproject.org/files/ENCFF669VMZ/@@download/ENCFF669VMZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/145426b3-161c-444d-9871-9342bbca007a/ENCFF669VMZ.fastq.gz ENCFF461TGS fastq fastq reads ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 510738882 Bradley Bernstein, Broad 8431bbb62ddb922ad2fbcf811637bb0c SRA:SRR14104018 https://www.encodeproject.org/files/ENCFF461TGS/@@download/ENCFF461TGS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/773c47f5-f332-4479-b1f9-8020ac93dd29/ENCFF461TGS.fastq.gz ENCFF488XMZ fastq fastq reads ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of 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CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 427125998 Bradley Bernstein, Broad 4ff15d51e1bdede2e0753ee81b8a1fdf SRA:SRR14104017 https://www.encodeproject.org/files/ENCFF785XOR/@@download/ENCFF785XOR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ca27de6b-9e64-4fca-9314-4038e233efa6/ENCFF785XOR.fastq.gz ENCFF099OWW fastq fastq reads ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 498202495 Bradley Bernstein, Broad 0fc805e409a2f1e6a7384178c5980560 SRA:SRR14104020 https://www.encodeproject.org/files/ENCFF099OWW/@@download/ENCFF099OWW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9b3b6575-8d3d-4bde-897d-a216652e5e66/ENCFF099OWW.fastq.gz ENCFF644VGP fastq fastq reads ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 508070747 Bradley Bernstein, Broad 49d75fcefa4d1aa750dacf6de20b2c03 SRA:SRR14104021 https://www.encodeproject.org/files/ENCFF644VGP/@@download/ENCFF644VGP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/41acf77c-7c8f-49b7-add7-6c338ba95b37/ENCFF644VGP.fastq.gz ENCFF672NRP bam bam unfiltered alignments GRCh38 ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF930BXM/, /files/ENCFF669VMZ/, /files/ENCFF461TGS/, /files/ENCFF488XMZ/, /files/ENCFF260JTD/, /files/ENCFF099OWW/, /files/ENCFF785XOR/, /files/ENCFF110MCL/, /files/ENCFF644VGP/ 3633121803 ENCODE Processing Pipeline 054634d1365cb53eafdc4b3c8f673826 https://www.encodeproject.org/files/ENCFF672NRP/@@download/ENCFF672NRP.bam released s3://encode-public/2020/06/14/81d154f5-8474-4eae-b145-2c97e594b4c5/ENCFF672NRP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF890CXB bam bam alignments GRCh38 ENCSR077RBB Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0002351 progenitor cell of endocrine pancreas in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF930BXM/, /files/ENCFF669VMZ/, /files/ENCFF461TGS/, /files/ENCFF488XMZ/, /files/ENCFF260JTD/, /files/ENCFF099OWW/, /files/ENCFF785XOR/, /files/ENCFF110MCL/, /files/ENCFF644VGP/ 3081567185 ENCODE Processing Pipeline 9dffbd4be9d34a2337831e460ba7ad90 https://www.encodeproject.org/files/ENCFF890CXB/@@download/ENCFF890CXB.bam released s3://encode-public/2020/06/14/855d3a79-712b-41d2-a3d7-a4fe20358631/ENCFF890CXB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF464VJZ fastq fastq reads ENCSR308YQB Control ChIP-seq /fly-donors/ENCDO023NVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44786/'], '@type': ['Target', 'Item'], 'name': 'nerfin-1-dmelanogaster', 'label': 'nerfin-1', '@id': '/targets/nerfin-1-dmelanogaster/', 'title': 'nerfin-1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f2741ec3-1d8d-4d34-b66d-b70c5949bf9e', 'status': 'released'} dm3 3L 874584 962992 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 761924255 Kevin White, UChicago e5c80e08f5a02088ef312d1800fe8299 https://www.encodeproject.org/files/ENCFF464VJZ/@@download/ENCFF464VJZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/7fd16c83-aa77-4cff-b674-450e65a3ff02/ENCFF464VJZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF939NKJ bam bam alignments dm6 ENCSR308YQB Control ChIP-seq /fly-donors/ENCDO023NVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44786/'], '@type': ['Target', 'Item'], 'name': 'nerfin-1-dmelanogaster', 'label': 'nerfin-1', '@id': '/targets/nerfin-1-dmelanogaster/', 'title': 'nerfin-1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f2741ec3-1d8d-4d34-b66d-b70c5949bf9e', 'status': 'released'} dm3 3L 874584 962992 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF464VJZ/, /files/ENCFF479RCH/ 1019284023 Kevin White, UChicago 4470f20097b400c82f4900772998b617 https://www.encodeproject.org/files/ENCFF939NKJ/@@download/ENCFF939NKJ.bam released s3://encode-public/2019/04/13/164ca9e7-2d1c-410a-ba36-a5571f636262/ENCFF939NKJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF416DRH bigWig bigWig read-depth normalized signal dm6 ENCSR308YQB Control ChIP-seq /fly-donors/ENCDO023NVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44786/'], '@type': ['Target', 'Item'], 'name': 'nerfin-1-dmelanogaster', 'label': 'nerfin-1', '@id': '/targets/nerfin-1-dmelanogaster/', 'title': 'nerfin-1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f2741ec3-1d8d-4d34-b66d-b70c5949bf9e', 'status': 'released'} dm3 3L 874584 962992 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF939NKJ/ 17592763 Kevin White, UChicago 98275c8a59721fcfa07654b86ccb7c08 https://www.encodeproject.org/files/ENCFF416DRH/@@download/ENCFF416DRH.bigWig released s3://encode-public/2019/04/16/988b9a1b-4a2a-45de-a53f-952a59af5263/ENCFF416DRH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF312SVV bigWig bigWig signal of unique reads dm6 ENCSR308YQB Control ChIP-seq /fly-donors/ENCDO023NVS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/44786/'], '@type': ['Target', 'Item'], 'name': 'nerfin-1-dmelanogaster', 'label': 'nerfin-1', '@id': '/targets/nerfin-1-dmelanogaster/', 'title': 'nerfin-1 (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'f2741ec3-1d8d-4d34-b66d-b70c5949bf9e', 'status': 'released'} dm3 3L 874584 962992 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF939NKJ/ 17576071 Kevin White, UChicago 19b9f21385f7e96b22401a3dbf29cee4 https://www.encodeproject.org/files/ENCFF312SVV/@@download/ENCFF312SVV.bigWig released s3://encode-public/2019/04/16/9179fb44-1854-42a5-999a-15cb5de7373d/ENCFF312SVV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF191UDM fastq fastq reads ENCSR926XXG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF160UKW/ 2640381967 Michael Snyder, Stanford 76767ad544ff1908c286d6efe59ff25c SRA:SRR14107002 https://www.encodeproject.org/files/ENCFF191UDM/@@download/ENCFF191UDM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/27/ee1d7d94-eee4-4d95-a906-340dd331cecf/ENCFF191UDM.fastq.gz ENCFF160UKW fastq fastq reads ENCSR926XXG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF191UDM/ 2258238324 Michael Snyder, Stanford 67934e0a5b358f8c1a8cfafb455bad0f SRA:SRR14107002 https://www.encodeproject.org/files/ENCFF160UKW/@@download/ENCFF160UKW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/27/11bddba0-a637-4d4c-8c4f-2113041c7f8d/ENCFF160UKW.fastq.gz ENCFF788JEA bam bam unfiltered alignments GRCh38 ENCSR926XXG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF160UKW/, /files/ENCFF191UDM/ 5031925189 ENCODE Processing Pipeline e6c526059c4e84d094d68b93d0d53174 https://www.encodeproject.org/files/ENCFF788JEA/@@download/ENCFF788JEA.bam released s3://encode-public/2020/04/21/04d03f07-2477-4fe4-8df6-995c3322e67a/ENCFF788JEA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF494KPY bam bam alignments GRCh38 ENCSR926XXG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF160UKW/, /files/ENCFF191UDM/ 3856947845 ENCODE Processing Pipeline 42d24030f42dad6dc1dacba284665334 https://www.encodeproject.org/files/ENCFF494KPY/@@download/ENCFF494KPY.bam released s3://encode-public/2020/04/21/e0e177c8-ca35-4221-82ae-4d2de855026d/ENCFF494KPY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF229TOU fastq fastq reads ENCSR611RVL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF546DKA/ 3226049008 Michael Snyder, Stanford 4587409b0db483dcf99fbba26db6165b SRA:SRR6213118 https://www.encodeproject.org/files/ENCFF229TOU/@@download/ENCFF229TOU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/25/025853c3-72c5-44af-84d4-fc290b5f39bb/ENCFF229TOU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF546DKA fastq fastq reads ENCSR611RVL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF229TOU/ 3659253152 Michael Snyder, Stanford 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released s3://encode-public/2020/06/02/1b54a2bd-a94d-49ce-b124-f385effffdde/ENCFF491QSO.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF517YBR bam bam alignments GRCh38 ENCSR611RVL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF229TOU/, /files/ENCFF546DKA/ 4202693786 ENCODE Processing Pipeline adfcc87ebd1b25d10715d8cacd1dad11 https://www.encodeproject.org/files/ENCFF517YBR/@@download/ENCFF517YBR.bam released s3://encode-public/2020/06/02/1b7779c5-dc4b-4bb8-bac8-6f3d54341782/ENCFF517YBR.bam ENCODE4 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF761QCU fastq fastq reads ENCSR841MVT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1428'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10481/'], '@type': ['Target', 'Item'], 'name': 'HOXB13-human', 'label': 'HOXB13', '@id': '/targets/HOXB13-human/', 'title': 'HOXB13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a063243c-e85e-46c8-ab32-9ce96c8a916c', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF372IKS/ 2976198549 Michael Snyder, Stanford bae2a15ad9981063b8e5681886efa37d https://www.encodeproject.org/files/ENCFF761QCU/@@download/ENCFF761QCU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/e72b4bd4-41f1-444a-8e48-6ee0301aa418/ENCFF761QCU.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF372IKS fastq fastq reads ENCSR841MVT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1428'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10481/'], '@type': ['Target', 'Item'], 'name': 'HOXB13-human', 'label': 'HOXB13', '@id': '/targets/HOXB13-human/', 'title': 'HOXB13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a063243c-e85e-46c8-ab32-9ce96c8a916c', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF761QCU/ 3254573222 Michael Snyder, Stanford cfe0e371f9323d386cc30c81f07ddca8 https://www.encodeproject.org/files/ENCFF372IKS/@@download/ENCFF372IKS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/a4726011-ec98-4780-a40b-4e6b0daa4809/ENCFF372IKS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF246EBT bam bam unfiltered alignments GRCh38 ENCSR841MVT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1428'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10481/'], '@type': ['Target', 'Item'], 'name': 'HOXB13-human', 'label': 'HOXB13', '@id': '/targets/HOXB13-human/', 'title': 'HOXB13 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a063243c-e85e-46c8-ab32-9ce96c8a916c', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, 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line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1914'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2104/'], '@type': ['Target', 'Item'], 'name': 'ESRRG-human', 'label': 'ESRRG', '@id': '/targets/ESRRG-human/', 'title': 'ESRRG (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ddf1c9bc-f52c-4c17-a0e1-ea447c27b5f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF916KAQ/, /files/ENCFF407DSI/ 3401804810 ENCODE Processing Pipeline 0e74c6da0296dd41f5f48114fe1d942f https://www.encodeproject.org/files/ENCFF923PZL/@@download/ENCFF923PZL.bam released s3://encode-public/2020/04/21/fa4ca62e-dfdb-4836-8c5b-b17926d694dc/ENCFF923PZL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF001ZYW fastq fastq reads ENCSR734EYQ Control ChIP-seq /mouse-donors/ENCDO221RVN/ UBERON:0002107 liver tissue Mus musculus DNA 2014-03-11 ENCODE see document 1 1_1 48 single-ended 2596810377 Ross Hardison, PennState 4e82c7dc4034aa35cc50e7c12c49d2bd https://www.encodeproject.org/files/ENCFF001ZYW/@@download/ENCFF001ZYW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/11/95edfbfb-0d38-4c28-95cf-27a4efd45d73/ENCFF001ZYW.fastq.gz low read length ENCFF001ZYX fastq fastq reads ENCSR734EYQ Control ChIP-seq /mouse-donors/ENCDO221RVN/ UBERON:0002107 liver tissue Mus musculus DNA 2014-03-11 ENCODE see document 2 2_1 48 single-ended 2251711860 Ross Hardison, PennState f034c648046c981f90c483290f5ac473 https://www.encodeproject.org/files/ENCFF001ZYX/@@download/ENCFF001ZYX.fastq.gz Illumina HiSeq 2000 released 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/mouse-donors/ENCDO221RVN/ UBERON:0002107 liver tissue Mus musculus DNA 2014-03-11 ENCODE see document 1 1_1 48 /files/ENCFF001ZYW/, /files/ENCFF806TVZ/ 3190802908 J. 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/files/ENCFF001ZYX/, /files/ENCFF309GLL/ 2802725324 ENCODE Processing Pipeline 72211f9e5024683da7c809810177d463 https://www.encodeproject.org/files/ENCFF173ODR/@@download/ENCFF173ODR.bam released s3://encode-public/2020/11/06/7be8151f-1544-4f2d-a978-d9f74ca260a0/ENCFF173ODR.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF543EDP bam bam unfiltered alignments mm10 ENCSR734EYQ Control ChIP-seq /mouse-donors/ENCDO221RVN/ UBERON:0002107 liver tissue Mus musculus DNA 2014-03-11 ENCODE see document 1 1_1 48 /files/ENCFF001ZYW/, /files/ENCFF309GLL/ 3200605363 ENCODE Processing Pipeline 703cd6baf796f6fc515378fef4c33686 https://www.encodeproject.org/files/ENCFF543EDP/@@download/ENCFF543EDP.bam released s3://encode-public/2020/11/06/cf28abed-0644-42ab-8519-6ff25f48f6fb/ENCFF543EDP.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF927XCZ bam bam alignments mm10 ENCSR734EYQ Control ChIP-seq /mouse-donors/ENCDO221RVN/ UBERON:0002107 liver tissue Mus musculus DNA 2014-03-11 ENCODE see document 1 1_1 48 /files/ENCFF001ZYW/, /files/ENCFF309GLL/ 2309375316 ENCODE Processing Pipeline 3fe844d6ed09f2783eba6349d6b41d02 https://www.encodeproject.org/files/ENCFF927XCZ/@@download/ENCFF927XCZ.bam released s3://encode-public/2020/11/06/bc0ad5a4-72ec-4c32-9da7-08ff75132052/ENCFF927XCZ.bam ENCODE4 v1.6.1 mm10 released low read length ENCFF979YRY fastq fastq reads ENCSR111NKF Control ChIP-seq /worm-donors/ENCDO478OJJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181341/'], '@type': ['Target', 'Item'], 'name': 'sdc-2-celegans', 'label': 'sdc-2', '@id': '/targets/sdc-2-celegans/', 'title': 'sdc-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '777e7937-3976-4a89-a6bf-e3954aa2ee27', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 647560539 Kevin White, UChicago 7dfcdebd0ffa0fba4465252862263e89 https://www.encodeproject.org/files/ENCFF979YRY/@@download/ENCFF979YRY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/f5d9e8df-4a52-435d-a34c-d796a2bc5b64/ENCFF979YRY.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF643PCM bam bam alignments ce10 ENCSR111NKF Control ChIP-seq /worm-donors/ENCDO478OJJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181341/'], '@type': ['Target', 'Item'], 'name': 'sdc-2-celegans', 'label': 'sdc-2', '@id': '/targets/sdc-2-celegans/', 'title': 'sdc-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '777e7937-3976-4a89-a6bf-e3954aa2ee27', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF979YRY/ 925801768 Kevin White, UChicago 8097c0ff1192cd338699f60ca5bbe2b2 https://www.encodeproject.org/files/ENCFF643PCM/@@download/ENCFF643PCM.bam released s3://encode-public/2015/08/19/4f7fb215-8166-4cf5-9367-babe7d6df964/ENCFF643PCM.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF662ZFE bigWig bigWig read-depth normalized signal ce10 ENCSR111NKF Control ChIP-seq /worm-donors/ENCDO478OJJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181341/'], '@type': ['Target', 'Item'], 'name': 'sdc-2-celegans', 'label': 'sdc-2', '@id': '/targets/sdc-2-celegans/', 'title': 'sdc-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '777e7937-3976-4a89-a6bf-e3954aa2ee27', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF643PCM/ 9964639 Kevin White, UChicago 82ea4285cccd39e7d4ccb162f369cd9a https://www.encodeproject.org/files/ENCFF662ZFE/@@download/ENCFF662ZFE.bigWig released s3://encode-public/2015/10/02/fa7a1ff8-aa05-47a0-916e-33c228a9fb03/ENCFF662ZFE.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF115QAB bigWig bigWig signal of unique reads ce10 ENCSR111NKF Control ChIP-seq /worm-donors/ENCDO478OJJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181341/'], '@type': ['Target', 'Item'], 'name': 'sdc-2-celegans', 'label': 'sdc-2', '@id': '/targets/sdc-2-celegans/', 'title': 'sdc-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '777e7937-3976-4a89-a6bf-e3954aa2ee27', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF643PCM/ 9960371 Kevin White, UChicago 8b7143e7fa0c7bcf865f85c437b4e137 https://www.encodeproject.org/files/ENCFF115QAB/@@download/ENCFF115QAB.bigWig released s3://encode-public/2015/10/02/9fc9a2de-c7de-4f24-a097-227f7ce3d793/ENCFF115QAB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF665TAW bam bam alignments ce11 ENCSR111NKF Control ChIP-seq /worm-donors/ENCDO478OJJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181341/'], '@type': ['Target', 'Item'], 'name': 'sdc-2-celegans', 'label': 'sdc-2', '@id': '/targets/sdc-2-celegans/', 'title': 'sdc-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '777e7937-3976-4a89-a6bf-e3954aa2ee27', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF979YRY/ 926598369 Kevin White, UChicago 423042756d299c37367291d8c95f5bf3 https://www.encodeproject.org/files/ENCFF665TAW/@@download/ENCFF665TAW.bam released s3://encode-public/2016/01/19/4001b95c-7185-4f15-bba1-704a6102438b/ENCFF665TAW.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF629YLW bigWig bigWig signal of unique reads ce11 ENCSR111NKF Control ChIP-seq /worm-donors/ENCDO478OJJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181341/'], '@type': ['Target', 'Item'], 'name': 'sdc-2-celegans', 'label': 'sdc-2', '@id': '/targets/sdc-2-celegans/', 'title': 'sdc-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '777e7937-3976-4a89-a6bf-e3954aa2ee27', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF665TAW/ 9959266 Kevin White, UChicago 7d5be19e105e91ba9f8a8221e945c7dc https://www.encodeproject.org/files/ENCFF629YLW/@@download/ENCFF629YLW.bigWig released s3://encode-public/2016/02/03/e8bb648e-9c14-4f36-adf0-cd494e1ca69f/ENCFF629YLW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF579ZUK bigWig bigWig read-depth normalized signal ce11 ENCSR111NKF Control ChIP-seq /worm-donors/ENCDO478OJJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181341/'], '@type': ['Target', 'Item'], 'name': 'sdc-2-celegans', 'label': 'sdc-2', '@id': '/targets/sdc-2-celegans/', 'title': 'sdc-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '777e7937-3976-4a89-a6bf-e3954aa2ee27', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF665TAW/ 9962247 Kevin White, UChicago 8d165fc3998339334254b21ea7b4a77c https://www.encodeproject.org/files/ENCFF579ZUK/@@download/ENCFF579ZUK.bigWig released s3://encode-public/2016/02/03/acb5b7c1-b08d-441f-ac20-d323f3cd47d5/ENCFF579ZUK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF711PML bigWig bigWig read-depth normalized signal dm6 ENCSR754KJL Control ChIP-seq /fly-donors/ENCDO000KKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31745/'], '@type': ['Target', 'Item'], 'name': 'CG18262-dmelanogaster', 'label': 'CG18262', '@id': '/targets/CG18262-dmelanogaster/', 'title': 'CG18262 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f136bc3-16b6-4253-ab3d-e7cfc3ffb2a5', 'status': 'released'} dm3 X 8037297 8058851 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF204BDY/ 17833587 Kevin White, UChicago 5ff5e645f64064a884b54f15ae47ab7a https://www.encodeproject.org/files/ENCFF711PML/@@download/ENCFF711PML.bigWig released s3://encode-public/2019/06/18/c7dff471-33c6-4143-84b9-4690f8d1342a/ENCFF711PML.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF686HTK fastq fastq reads ENCSR754KJL Control ChIP-seq /fly-donors/ENCDO000KKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31745/'], '@type': ['Target', 'Item'], 'name': 'CG18262-dmelanogaster', 'label': 'CG18262', '@id': '/targets/CG18262-dmelanogaster/', 'title': 'CG18262 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f136bc3-16b6-4253-ab3d-e7cfc3ffb2a5', 'status': 'released'} dm3 X 8037297 8058851 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1124944091 Kevin White, UChicago bf38c0c409316aa2ddb6bee6b9421e25 https://www.encodeproject.org/files/ENCFF686HTK/@@download/ENCFF686HTK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/e61dc656-ffc1-495e-8f8b-ddcbb9522a33/ENCFF686HTK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF204BDY bam bam alignments dm6 ENCSR754KJL Control ChIP-seq /fly-donors/ENCDO000KKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31745/'], '@type': ['Target', 'Item'], 'name': 'CG18262-dmelanogaster', 'label': 'CG18262', '@id': '/targets/CG18262-dmelanogaster/', 'title': 'CG18262 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f136bc3-16b6-4253-ab3d-e7cfc3ffb2a5', 'status': 'released'} dm3 X 8037297 8058851 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF686HTK/, /files/ENCFF479RCH/ 1526804239 Kevin White, UChicago bd9f6277455b3fce60201cad6b6ea241 https://www.encodeproject.org/files/ENCFF204BDY/@@download/ENCFF204BDY.bam released s3://encode-public/2019/06/18/d82042af-f9d0-4712-b1d4-f4c3087c0fc8/ENCFF204BDY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF633DIA bigWig bigWig signal of unique reads dm6 ENCSR754KJL Control ChIP-seq /fly-donors/ENCDO000KKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31745/'], '@type': ['Target', 'Item'], 'name': 'CG18262-dmelanogaster', 'label': 'CG18262', '@id': '/targets/CG18262-dmelanogaster/', 'title': 'CG18262 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '5f136bc3-16b6-4253-ab3d-e7cfc3ffb2a5', 'status': 'released'} dm3 X 8037297 8058851 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF204BDY/ 17866939 Kevin White, UChicago 58bcdb4064690e6fa253c41797a87051 https://www.encodeproject.org/files/ENCFF633DIA/@@download/ENCFF633DIA.bigWig released s3://encode-public/2019/06/18/af23a3b4-5e03-4d51-bf26-8936aec9a690/ENCFF633DIA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF591BZH bam bam unfiltered alignments hg19 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EIM/, /files/ENCFF807MUK/, /files/ENCFF002EIK/ 5824221476 ENCODE Processing Pipeline 6b53a5e1af11940c58f19234a9c09dab https://www.encodeproject.org/files/ENCFF591BZH/@@download/ENCFF591BZH.bam released s3://encode-public/2018/02/21/9aede634-355e-4d11-ab2e-d34e419da759/ENCFF591BZH.bam ENCODE3 hg19 archived ENCFF547CHJ bam bam unfiltered alignments hg19 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EIL/, /files/ENCFF002EIP/ 5303693950 ENCODE Processing Pipeline 70e60b78631008a4bd5922132515cf7b https://www.encodeproject.org/files/ENCFF547CHJ/@@download/ENCFF547CHJ.bam released s3://encode-public/2018/02/21/d94a344e-f309-4544-8d63-d53190367aa4/ENCFF547CHJ.bam ENCODE3 hg19 archived ENCFF002EIK fastq fastq reads ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EIM/ 2656722565 Michael Snyder, Stanford 32b16c1c013f3d9932b371efc10cca4d SRA:SRR5111836 https://www.encodeproject.org/files/ENCFF002EIK/@@download/ENCFF002EIK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/e96a2b5e-1fb0-4a8e-b437-26f1c726bc9f/ENCFF002EIK.fastq.gz ENCFF002EIL fastq fastq reads ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EIP/ 2385845930 Michael Snyder, Stanford 72461c78147b7e9eb617c208dea8e9ae SRA:SRR5111837 https://www.encodeproject.org/files/ENCFF002EIL/@@download/ENCFF002EIL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/2e3337e9-3eb9-4852-a277-79fd073b4070/ENCFF002EIL.fastq.gz ENCFF002EIM fastq fastq reads ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EIK/ 2685149934 Michael Snyder, Stanford afbb344be0e5d1b12c86d170a8f4533f SRA:SRR5111836 https://www.encodeproject.org/files/ENCFF002EIM/@@download/ENCFF002EIM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/49fab941-f15b-4090-812b-c97650f3ac36/ENCFF002EIM.fastq.gz ENCFF002EIP fastq fastq reads ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EIL/ 2413760352 Michael Snyder, Stanford ddb633c037e35b01b0dda7df817bc91c SRA:SRR5111837 https://www.encodeproject.org/files/ENCFF002EIP/@@download/ENCFF002EIP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/21f475bd-d080-496e-9844-b7711e25a253/ENCFF002EIP.fastq.gz ENCFF321TUP bam bam alignments hg19 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EIM/, /files/ENCFF807MUK/, /files/ENCFF002EIK/ 5029633950 ENCODE Processing Pipeline 840e49f7c7f845cd7179f7647c8e8f26 https://www.encodeproject.org/files/ENCFF321TUP/@@download/ENCFF321TUP.bam released s3://encode-public/2015/10/29/5f0cb2a2-3ba1-43b7-9845-4df963962200/ENCFF321TUP.bam ENCODE3 hg19 archived ENCFF806YIH bam bam alignments hg19 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF002EIL/, /files/ENCFF002EIP/ 4642696250 ENCODE Processing Pipeline 24c4a261d4786c610430fa67a61c8936 https://www.encodeproject.org/files/ENCFF806YIH/@@download/ENCFF806YIH.bam released s3://encode-public/2015/10/29/935dd72a-a0e3-4c73-b03b-512fe4ca2b95/ENCFF806YIH.bam ENCODE3 hg19 archived ENCFF200GTH bam bam unfiltered alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EIL/, /files/ENCFF002EIP/ 5315488316 ENCODE Processing Pipeline 36ba7fc666776b225a235324a9c277bb https://www.encodeproject.org/files/ENCFF200GTH/@@download/ENCFF200GTH.bam released s3://encode-public/2016/05/06/8aac5cde-0805-4270-abd4-c89af8bcab78/ENCFF200GTH.bam ENCODE3 GRCh38 archived ENCFF794LPI bam bam unfiltered alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EIM/, /files/ENCFF002EIK/, /files/ENCFF643CGH/ 5836855534 ENCODE Processing Pipeline 1bed9b34314959f81d017c00b58274d2 https://www.encodeproject.org/files/ENCFF794LPI/@@download/ENCFF794LPI.bam released s3://encode-public/2016/05/06/b6d0cc55-9c87-41a2-b41f-7c46909b0247/ENCFF794LPI.bam ENCODE3 GRCh38 archived ENCFF419UIG bam bam alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF002EIL/, /files/ENCFF002EIP/ 4650523840 ENCODE Processing Pipeline 2c8a0d8e2ffc7ca65ade9f8fe9f0dfe1 https://www.encodeproject.org/files/ENCFF419UIG/@@download/ENCFF419UIG.bam released s3://encode-public/2016/05/06/b2889d4f-2745-4f70-ba9b-da7e7c8c8b0b/ENCFF419UIG.bam ENCODE3 GRCh38 archived ENCFF189KJV bam bam alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EIM/, /files/ENCFF002EIK/, /files/ENCFF643CGH/ 5038389613 ENCODE Processing Pipeline 64ac01c84b90eb1838ef558e5e504dbc https://www.encodeproject.org/files/ENCFF189KJV/@@download/ENCFF189KJV.bam released s3://encode-public/2016/05/06/259eccfa-f667-4f62-adda-19d4ec2c301e/ENCFF189KJV.bam ENCODE3 GRCh38 archived ENCFF168CCR bam bam unfiltered alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EIM/, /files/ENCFF002EIK/, /files/ENCFF110MCL/ 5768967107 ENCODE Processing Pipeline b2f40b5e57dfbdb696739cd8ebeb4cc3 https://www.encodeproject.org/files/ENCFF168CCR/@@download/ENCFF168CCR.bam released s3://encode-public/2020/06/13/b7874d4e-5653-4f7a-bf93-d576a4acbff2/ENCFF168CCR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF011CLH bam bam alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EIM/, /files/ENCFF002EIK/, /files/ENCFF110MCL/ 4793108182 ENCODE Processing Pipeline f5ed07f3e0abbce661a68e51576ba288 https://www.encodeproject.org/files/ENCFF011CLH/@@download/ENCFF011CLH.bam released s3://encode-public/2020/06/13/c77b8690-11de-4988-a064-b8170093e8b2/ENCFF011CLH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF041EOD bam bam alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EIP/, /files/ENCFF110MCL/, /files/ENCFF002EIL/ 4426757300 ENCODE Processing Pipeline fc02fb1a5a00705e2e8233d09a2c256e https://www.encodeproject.org/files/ENCFF041EOD/@@download/ENCFF041EOD.bam released s3://encode-public/2020/06/13/1a8f6c3d-272d-47a9-b89e-4226350d52c7/ENCFF041EOD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF480BCC bam bam unfiltered alignments GRCh38 ENCSR610YRT Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EIP/, /files/ENCFF110MCL/, /files/ENCFF002EIL/ 5254494693 ENCODE Processing Pipeline c3a5f6c8e50b4b59fb4c825df9b3ac80 https://www.encodeproject.org/files/ENCFF480BCC/@@download/ENCFF480BCC.bam released s3://encode-public/2020/06/13/19619bd7-f704-4241-9b38-d98e8e8a2ee3/ENCFF480BCC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF342VZM bam bam unfiltered alignments GRCh38 ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF969IUT/, /files/ENCFF926MQL/, /files/ENCFF940AJW/, /files/ENCFF294RAQ/, /files/ENCFF110MCL/ 5087639640 ENCODE Processing Pipeline 7f50c8fcc27d9a2b04f9e285f8605803 https://www.encodeproject.org/files/ENCFF342VZM/@@download/ENCFF342VZM.bam released s3://encode-public/2020/09/20/c4b8b4ef-02e9-43fa-a46d-6a267a766d9e/ENCFF342VZM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF291YEP bam bam alignments GRCh38 ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF969IUT/, /files/ENCFF926MQL/, /files/ENCFF940AJW/, /files/ENCFF294RAQ/, /files/ENCFF110MCL/ 4200656725 ENCODE Processing Pipeline 1c9bae7b62f0c313eaeef75025644139 https://www.encodeproject.org/files/ENCFF291YEP/@@download/ENCFF291YEP.bam released s3://encode-public/2020/09/20/9a8ceb96-85fd-4d7f-b4dd-4d3f61946858/ENCFF291YEP.bam ENCODE4 v1.5.1 GRCh38 released ENCFF926MQL fastq fastq reads ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 1549794640 Bradley Bernstein, Broad 95853f33a5060886c2ef0208650122b1 SRA:SRR10388662 https://www.encodeproject.org/files/ENCFF926MQL/@@download/ENCFF926MQL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/db3a6a8e-5f01-4027-9842-2bbc416e8423/ENCFF926MQL.fastq.gz ENCFF294RAQ fastq fastq reads ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_2 76 single-ended 1131120765 Bradley Bernstein, Broad 711fceaf839b30a8510cd18d38a8505c SRA:SRR10388664 https://www.encodeproject.org/files/ENCFF294RAQ/@@download/ENCFF294RAQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/00ff7fe2-a037-41e3-95d0-b1fd2efbbdb5/ENCFF294RAQ.fastq.gz ENCFF940AJW fastq fastq reads ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 1560214268 Bradley Bernstein, Broad 0b9af3d67372a68bb8e555d6d01447ca SRA:SRR10388663 https://www.encodeproject.org/files/ENCFF940AJW/@@download/ENCFF940AJW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/007954ff-6a74-47bb-aeb0-c576ae740e34/ENCFF940AJW.fastq.gz ENCFF969IUT fastq fastq reads ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_2 76 single-ended 1138289579 Bradley Bernstein, Broad 5dad2a3cec898610789854c000c307ff SRA:SRR10388665 https://www.encodeproject.org/files/ENCFF969IUT/@@download/ENCFF969IUT.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/01041538-9c4b-4c5f-aed2-c30bd0546763/ENCFF969IUT.fastq.gz ENCFF129XST bam bam unfiltered alignments GRCh38 ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF940AJW/, /files/ENCFF294RAQ/, /files/ENCFF643CGH/, /files/ENCFF926MQL/, /files/ENCFF969IUT/ 5112502250 ENCODE Processing Pipeline 39b2a6120b5234ce779fc936af4df3c0 https://www.encodeproject.org/files/ENCFF129XST/@@download/ENCFF129XST.bam released s3://encode-public/2019/06/12/6b9730d9-2ab8-4de2-9881-83a18afcafba/ENCFF129XST.bam ENCODE3 GRCh38 archived ENCFF342KCA bam bam alignments GRCh38 ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF940AJW/, /files/ENCFF294RAQ/, /files/ENCFF643CGH/, /files/ENCFF926MQL/, /files/ENCFF969IUT/ 4191939748 ENCODE Processing Pipeline f7fac842e528864df066bfe0420bc74b https://www.encodeproject.org/files/ENCFF342KCA/@@download/ENCFF342KCA.bam released s3://encode-public/2019/06/12/7192ba81-554c-491a-9495-cc7eca52dd2f/ENCFF342KCA.bam ENCODE3 GRCh38 archived ENCFF852WDT bam bam unfiltered alignments hg19 ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF940AJW/, /files/ENCFF294RAQ/, /files/ENCFF807MUK/, /files/ENCFF926MQL/, /files/ENCFF969IUT/ 5101241666 ENCODE Processing Pipeline 064c6b04bb02a63f0df2f9bb4bb099cb https://www.encodeproject.org/files/ENCFF852WDT/@@download/ENCFF852WDT.bam released s3://encode-public/2019/06/12/f878a38c-d6bd-4fe5-aa29-0c20b54a231f/ENCFF852WDT.bam ENCODE3 hg19 archived ENCFF069TKC bam bam alignments hg19 ENCSR329HFV Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF940AJW/, /files/ENCFF294RAQ/, /files/ENCFF807MUK/, /files/ENCFF926MQL/, /files/ENCFF969IUT/ 4185851063 ENCODE Processing Pipeline 3c427a766f8e57a936e1b2ee9ba33986 https://www.encodeproject.org/files/ENCFF069TKC/@@download/ENCFF069TKC.bam released s3://encode-public/2019/06/12/6549800c-89f5-40fe-9191-934bb58d7a18/ENCFF069TKC.bam ENCODE3 hg19 archived ENCFF311JXY fastq fastq reads ENCSR987FJM Control ChIP-seq /fly-donors/ENCDO018ALG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43401/'], '@type': ['Target', 'Item'], 'name': 'CG1647-dmelanogaster', 'label': 'CG1647', '@id': '/targets/CG1647-dmelanogaster/', 'title': 'CG1647 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6bf25a8-ee8b-4781-8fde-c850f0ad7ee0', 'status': 'released'} dm3 3R 24638877 24660475 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 267221360 Kevin White, UChicago d3115862a2310f56d2d647f83cf423cf https://www.encodeproject.org/files/ENCFF311JXY/@@download/ENCFF311JXY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/c09fa2ce-0d94-430b-a5e7-eb722add3ab3/ENCFF311JXY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF977QEV bam bam alignments dm3 ENCSR987FJM Control ChIP-seq /fly-donors/ENCDO018ALG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43401/'], '@type': ['Target', 'Item'], 'name': 'CG1647-dmelanogaster', 'label': 'CG1647', '@id': '/targets/CG1647-dmelanogaster/', 'title': 'CG1647 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6bf25a8-ee8b-4781-8fde-c850f0ad7ee0', 'status': 'released'} dm3 3R 24638877 24660475 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF311JXY/ 387149578 Kevin White, UChicago 3750f5a2fd99f8f841d4155c99c4ed8d https://www.encodeproject.org/files/ENCFF977QEV/@@download/ENCFF977QEV.bam released s3://encode-public/2015/08/03/b8c7b6a2-19bb-46b6-904a-563d60aef794/ENCFF977QEV.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF080ISE bigWig bigWig read-depth normalized signal dm3 ENCSR987FJM Control ChIP-seq /fly-donors/ENCDO018ALG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43401/'], '@type': ['Target', 'Item'], 'name': 'CG1647-dmelanogaster', 'label': 'CG1647', '@id': '/targets/CG1647-dmelanogaster/', 'title': 'CG1647 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6bf25a8-ee8b-4781-8fde-c850f0ad7ee0', 'status': 'released'} dm3 3R 24638877 24660475 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF977QEV/ 15213267 Kevin White, UChicago f99c1ecd8eef180f6e493901246f4eac https://www.encodeproject.org/files/ENCFF080ISE/@@download/ENCFF080ISE.bigWig released s3://encode-public/2015/10/05/ae2c35d2-5b0b-43af-ac2e-d98d57e17aa5/ENCFF080ISE.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF780ILT bigWig bigWig signal of unique reads dm3 ENCSR987FJM Control ChIP-seq /fly-donors/ENCDO018ALG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43401/'], '@type': ['Target', 'Item'], 'name': 'CG1647-dmelanogaster', 'label': 'CG1647', '@id': '/targets/CG1647-dmelanogaster/', 'title': 'CG1647 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6bf25a8-ee8b-4781-8fde-c850f0ad7ee0', 'status': 'released'} dm3 3R 24638877 24660475 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF977QEV/ 15169384 Kevin White, UChicago 0d7767b34c75ab832f4ac0ece8c3416d https://www.encodeproject.org/files/ENCFF780ILT/@@download/ENCFF780ILT.bigWig released s3://encode-public/2015/10/05/6f7f1559-1a21-4b4a-a1bf-5aabf89b8294/ENCFF780ILT.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF083ZRN bam bam alignments dm6 ENCSR987FJM Control ChIP-seq /fly-donors/ENCDO018ALG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43401/'], '@type': ['Target', 'Item'], 'name': 'CG1647-dmelanogaster', 'label': 'CG1647', '@id': '/targets/CG1647-dmelanogaster/', 'title': 'CG1647 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6bf25a8-ee8b-4781-8fde-c850f0ad7ee0', 'status': 'released'} dm3 3R 24638877 24660475 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF311JXY/ 385663997 Kevin White, UChicago c7b71510876b9676fa5e7d0623c1c214 https://www.encodeproject.org/files/ENCFF083ZRN/@@download/ENCFF083ZRN.bam released s3://encode-public/2016/04/21/efcac1a3-5a11-435c-a422-8d2e251f1807/ENCFF083ZRN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF223OAQ bigWig bigWig read-depth normalized signal dm6 ENCSR987FJM Control ChIP-seq /fly-donors/ENCDO018ALG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43401/'], '@type': ['Target', 'Item'], 'name': 'CG1647-dmelanogaster', 'label': 'CG1647', '@id': '/targets/CG1647-dmelanogaster/', 'title': 'CG1647 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6bf25a8-ee8b-4781-8fde-c850f0ad7ee0', 'status': 'released'} dm3 3R 24638877 24660475 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF083ZRN/ 17323761 Kevin White, UChicago 73d5ac4c263c23f1b4c5e8e7b325aee6 https://www.encodeproject.org/files/ENCFF223OAQ/@@download/ENCFF223OAQ.bigWig released s3://encode-public/2016/06/20/f23053b5-4c53-4999-9297-700138111896/ENCFF223OAQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF500XBX bigWig bigWig signal of unique reads dm6 ENCSR987FJM Control ChIP-seq /fly-donors/ENCDO018ALG/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43401/'], '@type': ['Target', 'Item'], 'name': 'CG1647-dmelanogaster', 'label': 'CG1647', '@id': '/targets/CG1647-dmelanogaster/', 'title': 'CG1647 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e6bf25a8-ee8b-4781-8fde-c850f0ad7ee0', 'status': 'released'} dm3 3R 24638877 24660475 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF083ZRN/ 17265629 Kevin White, UChicago ae760d3eb4b1d5af8e18de44ada3b593 https://www.encodeproject.org/files/ENCFF500XBX/@@download/ENCFF500XBX.bigWig released s3://encode-public/2016/06/20/65451255-b2a4-4985-a824-90fe8b553c6b/ENCFF500XBX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF512UAL bam bam redacted unfiltered alignments GRCh38 ENCSR850JSG Control ChIP-seq /human-donors/ENCDO026HUZ/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF418INU/ 244861942 ENCODE Processing Pipeline db69ecadc4f27feb18c3e293de1bd2e7 https://www.encodeproject.org/files/ENCFF512UAL/@@download/ENCFF512UAL.bam released s3://encode-public/2017/11/09/612f7351-9215-4944-8a53-95cb2958d807/ENCFF512UAL.bam ENCODE3 GRCh38 archived low read depth ENCFF711ORX bam bam redacted alignments GRCh38 ENCSR850JSG Control ChIP-seq /human-donors/ENCDO026HUZ/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF418INU/ 187646611 ENCODE Processing Pipeline 3d3ef366e4008e2b9cd9ab3ebfd62316 https://www.encodeproject.org/files/ENCFF711ORX/@@download/ENCFF711ORX.bam released s3://encode-public/2017/11/09/7171068f-27b8-48c9-b567-656b428b3e34/ENCFF711ORX.bam ENCODE3 GRCh38 archived low read depth ENCFF103BJT bam bam redacted unfiltered alignments hg19 ENCSR850JSG Control ChIP-seq /human-donors/ENCDO026HUZ/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF418INU/ 240984215 ENCODE Processing Pipeline 141f039bb5741e2b55a38d8b8b054512 https://www.encodeproject.org/files/ENCFF103BJT/@@download/ENCFF103BJT.bam released s3://encode-public/2018/01/20/ea1e8a45-5de3-46d8-aa5b-23069c9257b6/ENCFF103BJT.bam ENCODE3 hg19 archived low read depth ENCFF293DND bam bam redacted alignments hg19 ENCSR850JSG Control ChIP-seq /human-donors/ENCDO026HUZ/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF418INU/ 187429628 ENCODE Processing Pipeline c3815035946b0fbcfcca592effaf087b https://www.encodeproject.org/files/ENCFF293DND/@@download/ENCFF293DND.bam released s3://encode-public/2018/01/20/87064150-eec7-4cef-ae45-0d73a99cdbed/ENCFF293DND.bam ENCODE3 hg19 archived low read depth ENCFF940CZG bam bam redacted alignments GRCh38 ENCSR850JSG Control ChIP-seq /human-donors/ENCDO026HUZ/ NTR:0001407 germinal matrix tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF109DPK/, /files/ENCFF110MCL/ 1022959182 ENCODE Processing Pipeline fcad71e09c36a9187b3dfe7fdc6e3f5d https://www.encodeproject.org/files/ENCFF940CZG/@@download/ENCFF940CZG.bam released s3://encode-public/2021/01/28/ba0cf4c6-4941-4ee1-aae3-525ff63e7d8f/ENCFF940CZG.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF963KVX fastq fastq reads ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF320JDA/ 2771270300 Richard Myers, HAIB 9c0525a6bfa4c14a0ff290aabd1102a6 SRA:SRR6212963 https://www.encodeproject.org/files/ENCFF963KVX/@@download/ENCFF963KVX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/ed0ce90b-e501-4626-aa12-2c03bd9c863d/ENCFF963KVX.fastq.gz ENCFF320JDA fastq fastq reads ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF963KVX/ 2916588627 Richard Myers, HAIB 063188a66d9955d31ba07951f8720037 SRA:SRR6212963 https://www.encodeproject.org/files/ENCFF320JDA/@@download/ENCFF320JDA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/45652ff9-c4a5-4b48-a18f-a291219a1959/ENCFF320JDA.fastq.gz ENCFF807BCJ bam bam unfiltered alignments hg19 ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF320JDA/, /files/ENCFF963KVX/ 6715913554 ENCODE Processing Pipeline 6732a63324c38731d5970b7ef760a978 https://www.encodeproject.org/files/ENCFF807BCJ/@@download/ENCFF807BCJ.bam released s3://encode-public/2017/02/02/3b380702-85e1-4bf1-9ace-43f6b0487a56/ENCFF807BCJ.bam ENCODE3 hg19 archived ENCFF838QSV bam bam alignments hg19 ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF320JDA/, /files/ENCFF963KVX/ 4798799733 ENCODE Processing Pipeline 5ca104bcafc43d65be1100127b4f5e6c https://www.encodeproject.org/files/ENCFF838QSV/@@download/ENCFF838QSV.bam released s3://encode-public/2017/02/02/f7f8a0e8-cdfb-49da-8620-9690b4aa4426/ENCFF838QSV.bam ENCODE3 hg19 archived ENCFF910ROP bam bam unfiltered alignments GRCh38 ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF320JDA/, /files/ENCFF963KVX/ 6742725656 ENCODE Processing Pipeline 8d65c7d469c534ab81876f251197f6ef https://www.encodeproject.org/files/ENCFF910ROP/@@download/ENCFF910ROP.bam released s3://encode-public/2017/02/02/3ecaac51-4c67-429a-a5c8-be121cd146cf/ENCFF910ROP.bam ENCODE3 GRCh38 archived ENCFF280UZG bam bam alignments GRCh38 ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF320JDA/, /files/ENCFF963KVX/ 4805052285 ENCODE Processing Pipeline cefbf7e3e78400e26220a00ba9f5faf5 https://www.encodeproject.org/files/ENCFF280UZG/@@download/ENCFF280UZG.bam released s3://encode-public/2017/02/02/ce2bde1f-648a-4a03-9b1d-ef7baf200d30/ENCFF280UZG.bam ENCODE3 GRCh38 archived ENCFF335JVH bam bam alignments GRCh38 ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF963KVX/, /files/ENCFF320JDA/ 4544744904 ENCODE Processing Pipeline 7141d9289eadc79c88bb2869bcab9b1b https://www.encodeproject.org/files/ENCFF335JVH/@@download/ENCFF335JVH.bam released s3://encode-public/2020/06/06/2d5ac0e8-9391-468b-9541-dd3a0e1b88a1/ENCFF335JVH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF872PMI bam bam unfiltered alignments GRCh38 ENCSR014XSP Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF963KVX/, /files/ENCFF320JDA/ 6746506834 ENCODE Processing Pipeline 1ed09309ae88a6d3e097d52273e9d27a https://www.encodeproject.org/files/ENCFF872PMI/@@download/ENCFF872PMI.bam released s3://encode-public/2020/06/06/90d97699-e2f5-43ea-b9b1-06035ee132d7/ENCFF872PMI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF245ALB fastq fastq reads ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF498AHD/ 2465468753 Richard Myers, HAIB 275dd923f02316f14aaa821897cc4198 SRA:SRR6213678 https://www.encodeproject.org/files/ENCFF245ALB/@@download/ENCFF245ALB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/55d6e5e4-3c77-4b28-a2c3-6ee470a0f802/ENCFF245ALB.fastq.gz extremely low read depth ENCFF498AHD fastq fastq reads ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF245ALB/ 2573549342 Richard Myers, HAIB a7533d93f292b90fd6cfd513a2898b33 SRA:SRR6213678 https://www.encodeproject.org/files/ENCFF498AHD/@@download/ENCFF498AHD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/ca5a246c-e1bb-4c37-be64-8fcfff3de695/ENCFF498AHD.fastq.gz extremely low read depth ENCFF849COH bam bam unfiltered alignments hg19 ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF245ALB/, /files/ENCFF807MUK/, /files/ENCFF498AHD/ 3942333765 ENCODE Processing Pipeline 85e61995dd49d931834922c187ad5ffc https://www.encodeproject.org/files/ENCFF849COH/@@download/ENCFF849COH.bam released s3://encode-public/2017/02/02/e4792853-d151-489f-b9a3-dece5efd93cd/ENCFF849COH.bam ENCODE3 hg19 archived extremely low read depth ENCFF256EFM bam bam alignments hg19 ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF245ALB/, /files/ENCFF807MUK/, /files/ENCFF498AHD/ 2724551841 ENCODE Processing Pipeline d3830adcb23c0eb0a3e025412f9de863 https://www.encodeproject.org/files/ENCFF256EFM/@@download/ENCFF256EFM.bam released s3://encode-public/2017/02/02/fd6db509-bea9-4079-9e15-760317f3362a/ENCFF256EFM.bam ENCODE3 hg19 archived extremely low read depth ENCFF801PHO bam bam alignments GRCh38 ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF245ALB/, /files/ENCFF643CGH/, /files/ENCFF498AHD/ 2730550230 ENCODE Processing Pipeline e93a9c9b7cc49f14cea94725cb2ba2dd https://www.encodeproject.org/files/ENCFF801PHO/@@download/ENCFF801PHO.bam released s3://encode-public/2017/02/02/eaf62372-d27f-41c6-804f-0c9af646634b/ENCFF801PHO.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF112ALH bam bam unfiltered alignments GRCh38 ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF245ALB/, /files/ENCFF643CGH/, /files/ENCFF498AHD/ 3934513193 ENCODE Processing Pipeline f843683c1dc4cfb05fcfb90b08096f0a https://www.encodeproject.org/files/ENCFF112ALH/@@download/ENCFF112ALH.bam released s3://encode-public/2017/02/02/fef5b33b-f37e-496e-b7d2-609eb1441aba/ENCFF112ALH.bam ENCODE3 GRCh38 archived extremely low read depth ENCFF920XYW bam bam unfiltered alignments GRCh38 ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF245ALB/, /files/ENCFF110MCL/, /files/ENCFF498AHD/ 3914532339 ENCODE Processing Pipeline 5ee803e5cc4b3b6053c1e89ffb928dd1 https://www.encodeproject.org/files/ENCFF920XYW/@@download/ENCFF920XYW.bam released s3://encode-public/2020/10/28/1cb30c80-7504-45ea-9f6b-8a7fa1c70aad/ENCFF920XYW.bam ENCODE4 v1.5.1 GRCh38 released extremely low read depth ENCFF179VJF bam bam alignments GRCh38 ENCSR689LFI Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF245ALB/, /files/ENCFF110MCL/, /files/ENCFF498AHD/ 182865910 ENCODE Processing Pipeline a94267a8e597dab7f82417a46e2aa185 https://www.encodeproject.org/files/ENCFF179VJF/@@download/ENCFF179VJF.bam released s3://encode-public/2020/10/28/10836998-1f6c-443a-8de3-9da3d1ff0d21/ENCFF179VJF.bam ENCODE4 v1.5.1 GRCh38 released extremely low read depth ENCFF386KVV fastq fastq reads ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 159267698 Michael Snyder, Stanford 160e900fc11da60adc8952a319ce93b0 https://www.encodeproject.org/files/ENCFF386KVV/@@download/ENCFF386KVV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/b34ae626-c9ad-41d5-97bf-dab62a6d1057/ENCFF386KVV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF726KCO fastq fastq reads ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 138243410 Michael Snyder, Stanford 9a1a0ff7086bfd388e128eecc0a62c6c https://www.encodeproject.org/files/ENCFF726KCO/@@download/ENCFF726KCO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/37914b6d-4ba7-4456-9393-66e5aaef5e8c/ENCFF726KCO.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF833MAH bam bam alignments ce10 ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF386KVV/, /files/ENCFF726KCO/, /files/ENCFF987UMF/ 417336864 Kevin White, UChicago c71487e317796c6aa39f2fe25ab0d820 https://www.encodeproject.org/files/ENCFF833MAH/@@download/ENCFF833MAH.bam released s3://encode-public/2017/04/27/467d26b4-0f43-4a37-ad52-a883dae8f8c2/ENCFF833MAH.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF562YYP bam bam alignments ce11 ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF386KVV/, /files/ENCFF726KCO/, /files/ENCFF586MOL/ 417881270 Kevin White, UChicago 3d0a25796cb66c8c3dcd735c40c08d76 https://www.encodeproject.org/files/ENCFF562YYP/@@download/ENCFF562YYP.bam released s3://encode-public/2017/04/27/72ecc639-a237-48a5-a2b7-9828e9f7cd4d/ENCFF562YYP.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF398CRD bigWig bigWig read-depth normalized signal ce10 ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF833MAH/ 10033829 Kevin White, UChicago 1f07554461330cd7fc1e85fbb01d516e https://www.encodeproject.org/files/ENCFF398CRD/@@download/ENCFF398CRD.bigWig released s3://encode-public/2017/04/29/a4b2d144-c879-4c34-aefd-6f2f181b5562/ENCFF398CRD.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF036RIA bigWig bigWig signal of unique reads ce10 ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF833MAH/ 10017322 Kevin White, UChicago b0031a9d15b9cb9d0f73d687337b45cb https://www.encodeproject.org/files/ENCFF036RIA/@@download/ENCFF036RIA.bigWig released s3://encode-public/2017/04/29/6c89695d-f5f6-45e3-88f7-8e49a147c9bc/ENCFF036RIA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF109JVT bigWig bigWig read-depth normalized signal ce11 ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF562YYP/ 10025101 Kevin White, UChicago 00abec7dfaa68c30c2d547688160a8b0 https://www.encodeproject.org/files/ENCFF109JVT/@@download/ENCFF109JVT.bigWig released s3://encode-public/2017/04/29/c9e2073c-2abb-47c3-8c22-598346376840/ENCFF109JVT.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF208PDI bigWig bigWig signal of unique reads ce11 ENCSR346UOK Control ChIP-seq /worm-donors/ENCDO958NDB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172249/'], '@type': ['Target', 'Item'], 'name': 'lin-35-celegans', 'label': 'lin-35', '@id': '/targets/lin-35-celegans/', 'title': 'lin-35 (Caenorhabditis elegans)', 'investigated_as': ['DNA replication'], 'uuid': 'cf8e4e71-7d8e-4c17-9d83-0fb01d070750', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF562YYP/ 10015759 Kevin White, UChicago b48f5f4eae3fca3de06ebb7e30f49a2a https://www.encodeproject.org/files/ENCFF208PDI/@@download/ENCFF208PDI.bigWig released s3://encode-public/2017/04/29/175ce7c7-f4b6-4d87-9d9b-f6c118b28082/ENCFF208PDI.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF723EDR fastq fastq reads ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF475OEA/ 3068442429 Michael Snyder, Stanford 483b033127808e7a1c5f09412837c5a0 SRA:SRR6213115 https://www.encodeproject.org/files/ENCFF723EDR/@@download/ENCFF723EDR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/6961694d-8e24-458b-9e46-b55621b34b3f/ENCFF723EDR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF475OEA fastq fastq reads ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF723EDR/ 3752054516 Michael Snyder, Stanford b217c07e5c3d9dc14310f5a23cd74d3d SRA:SRR6213115 https://www.encodeproject.org/files/ENCFF475OEA/@@download/ENCFF475OEA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/45390473-8394-4c46-b53d-76e4db85163b/ENCFF475OEA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF040THE bam bam unfiltered alignments hg19 ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF475OEA/, /files/ENCFF807MUK/, /files/ENCFF723EDR/ 6459867095 ENCODE Processing Pipeline bc6794b37597fca225d2dbcb44305f90 https://www.encodeproject.org/files/ENCFF040THE/@@download/ENCFF040THE.bam released s3://encode-public/2017/03/23/875d4245-9455-4114-b626-72085a0d2533/ENCFF040THE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF632VRO bam bam unfiltered alignments GRCh38 ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF475OEA/, /files/ENCFF643CGH/, /files/ENCFF723EDR/ 6468972066 ENCODE Processing Pipeline bc702f75ae74f7deec6d7829ca505f44 https://www.encodeproject.org/files/ENCFF632VRO/@@download/ENCFF632VRO.bam released s3://encode-public/2017/03/23/c5e34740-fc7e-401b-be8a-2a1349b92134/ENCFF632VRO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF611TZK bam bam alignments GRCh38 ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF475OEA/, /files/ENCFF643CGH/, /files/ENCFF723EDR/ 4441009281 ENCODE Processing Pipeline 3b34b732022dae97bfbccb594e4a1367 https://www.encodeproject.org/files/ENCFF611TZK/@@download/ENCFF611TZK.bam released s3://encode-public/2017/03/23/ce5786d9-b344-432e-8a52-1ea478ac5963/ENCFF611TZK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF018XQD bam bam alignments hg19 ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF475OEA/, /files/ENCFF807MUK/, /files/ENCFF723EDR/ 4432722678 ENCODE Processing Pipeline 8e194fa2e0819a92d0ea4d942a9b1012 https://www.encodeproject.org/files/ENCFF018XQD/@@download/ENCFF018XQD.bam released s3://encode-public/2017/03/23/bb43bed3-46cc-4dd5-876c-2be9e59abc10/ENCFF018XQD.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF524ECW bam bam unfiltered alignments GRCh38 ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF723EDR/, /files/ENCFF475OEA/ 6467736448 ENCODE Processing Pipeline db719188ac9df1d56cd3822b60fad532 https://www.encodeproject.org/files/ENCFF524ECW/@@download/ENCFF524ECW.bam released s3://encode-public/2020/06/03/76d29bb9-f9b0-43c2-86e9-1fdb09cf1258/ENCFF524ECW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF886IKL bam bam alignments GRCh38 ENCSR312YGL Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF723EDR/, /files/ENCFF475OEA/ 4390135433 ENCODE Processing Pipeline a1df162a458f7884f3a66b012dd411ff https://www.encodeproject.org/files/ENCFF886IKL/@@download/ENCFF886IKL.bam released s3://encode-public/2020/06/03/5c37a53e-6758-44a6-aa10-95e7551122fd/ENCFF886IKL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF002APX fastq fastq reads ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1277190930 Bing Ren, UCSD b12bcd559883a6395fbdc91fd0b6896a SRA:SRR3652649 https://www.encodeproject.org/files/ENCFF002APX/@@download/ENCFF002APX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/819d7d07-ef21-4193-96bc-98da219d2690/ENCFF002APX.fastq.gz low read depth, low read length, mixed read lengths ENCFF002AQA fastq fastq reads ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 1246439122 Bing Ren, UCSD ccd5f7bbf3022a3c6593764a4ed5dc7d SRA:SRR3652650 https://www.encodeproject.org/files/ENCFF002AQA/@@download/ENCFF002AQA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/0e029957-8b6f-4dfd-9768-3bb50e97884a/ENCFF002AQA.fastq.gz low read depth, low read length, mixed read lengths ENCFF639VQI bam bam unfiltered alignments mm10-minimal ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002AQA/ 1374359511 ENCODE Processing Pipeline 4112be893eda856baa9ecdc4812479b2 https://www.encodeproject.org/files/ENCFF639VQI/@@download/ENCFF639VQI.bam archived s3://encode-public/2015/02/09/9c0f7eca-8be5-4f89-a4f0-cee9ba95712a/ENCFF639VQI.bam low read depth, low read length, mixed read lengths ENCFF192WRZ bam bam unfiltered alignments mm10-minimal ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002APX/, /files/ENCFF806TVZ/ 1432686749 ENCODE Processing Pipeline bc7b0b0774725b63f84c674cf77e4d88 https://www.encodeproject.org/files/ENCFF192WRZ/@@download/ENCFF192WRZ.bam archived s3://encode-public/2015/02/09/ec94b00c-8ff5-426a-b706-b3c65ecc6e74/ENCFF192WRZ.bam low read depth, low read length, mixed read lengths ENCFF775YLK bam bam alignments mm10-minimal ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF002AQA/ 925369262 ENCODE Processing Pipeline 2e6cffc04ae57c7b095040cd5c807b07 https://www.encodeproject.org/files/ENCFF775YLK/@@download/ENCFF775YLK.bam archived s3://encode-public/2015/05/24/11224397-6ec4-46ca-8133-2d36a65d77bd/ENCFF775YLK.bam low read depth, low read length, mixed read lengths ENCFF009SMR bam bam alignments mm10-minimal ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF002APX/, /files/ENCFF806TVZ/ 1014512295 ENCODE Processing Pipeline 5c95b18092473b904f739e341112d917 https://www.encodeproject.org/files/ENCFF009SMR/@@download/ENCFF009SMR.bam archived s3://encode-public/2015/05/24/bcc30d5c-193b-41de-8a79-261d53312f30/ENCFF009SMR.bam low read depth, low read length, mixed read lengths ENCFF864ZMZ bam bam unfiltered alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQA/ 1376274870 ENCODE Processing Pipeline 16c11a691fbb1feb22b9903e49a45b3f https://www.encodeproject.org/files/ENCFF864ZMZ/@@download/ENCFF864ZMZ.bam released s3://encode-public/2016/10/03/91671ee6-e269-49a3-be46-13ca03c97232/ENCFF864ZMZ.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF297IWD bam bam unfiltered alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APX/, /files/ENCFF018NEO/ 1176637868 ENCODE Processing Pipeline bb3086004ce37a0aa073bc366572cc21 https://www.encodeproject.org/files/ENCFF297IWD/@@download/ENCFF297IWD.bam released s3://encode-public/2016/10/03/926d64e9-737e-4779-9c0f-99a3ee5295bc/ENCFF297IWD.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF911DNW bam bam alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQA/ 925023019 ENCODE Processing Pipeline 1bc2227ade2b66ade9597e1a3eb34332 https://www.encodeproject.org/files/ENCFF911DNW/@@download/ENCFF911DNW.bam released s3://encode-public/2016/10/03/117d4e85-4321-403b-92b5-b699c55dbc9a/ENCFF911DNW.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF831XWF bam bam alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APX/, /files/ENCFF018NEO/ 776899419 ENCODE Processing Pipeline 6d90dccfd14303c0c4b425fe0433274e https://www.encodeproject.org/files/ENCFF831XWF/@@download/ENCFF831XWF.bam released s3://encode-public/2016/10/03/2b563e60-cf4d-4ed3-acbe-2da00f7af131/ENCFF831XWF.bam ENCODE3 mm10 archived low read depth, low read length, mixed read lengths ENCFF560GUN bam bam unfiltered alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APX/, /files/ENCFF309GLL/ 1146889536 ENCODE Processing Pipeline aee4d187a52b9f8ff3be6d195de6eaf6 https://www.encodeproject.org/files/ENCFF560GUN/@@download/ENCFF560GUN.bam released s3://encode-public/2020/10/08/2361a058-c88b-469f-a649-570ac5e5a318/ENCFF560GUN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF124XXN bam bam unfiltered alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQA/, /files/ENCFF309GLL/ 1334233085 ENCODE Processing Pipeline b8556466dc50d174d494d4fd19914ec7 https://www.encodeproject.org/files/ENCFF124XXN/@@download/ENCFF124XXN.bam released s3://encode-public/2020/10/08/b86a9ee9-07b0-4685-8a0e-a71fee42188b/ENCFF124XXN.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF124JBB bam bam alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002APX/, /files/ENCFF309GLL/ 836548813 ENCODE Processing Pipeline 22a093fb22247a3619e0cb8a8b8d059f https://www.encodeproject.org/files/ENCFF124JBB/@@download/ENCFF124JBB.bam released s3://encode-public/2020/10/08/b7d5c6d9-c02a-4fdf-8f7a-801579de4999/ENCFF124JBB.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF074UDB bam bam alignments mm10 ENCSR645QSY Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0000160 intestine tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002AQA/, /files/ENCFF309GLL/ 992469487 ENCODE Processing Pipeline 29b29f46316a0246907653d02db0ae9f https://www.encodeproject.org/files/ENCFF074UDB/@@download/ENCFF074UDB.bam released s3://encode-public/2020/10/08/26f8be95-bf2c-403c-ab2a-ba3244eebc9c/ENCFF074UDB.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length, mixed read lengths ENCFF288UZE fastq fastq reads ENCSR310FMI Control ChIP-seq /worm-donors/ENCDO011RXQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180985/'], '@type': ['Target', 'Item'], 'name': 'syd-9-celegans', 'label': 'syd-9', '@id': '/targets/syd-9-celegans/', 'title': 'syd-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'ee96ead1-a816-4444-b501-cdc2c68344b0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 504660513 Kevin White, UChicago 1ceb2b17bd34e13cb9bf32ee8585d8bd https://www.encodeproject.org/files/ENCFF288UZE/@@download/ENCFF288UZE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/d819a65a-b667-45b3-80cd-bbe6af7ccffd/ENCFF288UZE.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF669EHC bam bam alignments ce10 ENCSR310FMI Control ChIP-seq /worm-donors/ENCDO011RXQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180985/'], '@type': ['Target', 'Item'], 'name': 'syd-9-celegans', 'label': 'syd-9', '@id': '/targets/syd-9-celegans/', 'title': 'syd-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'ee96ead1-a816-4444-b501-cdc2c68344b0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF288UZE/ 600435310 Kevin White, UChicago c5dec40b1af13985fef157d1ad1d3c26 https://www.encodeproject.org/files/ENCFF669EHC/@@download/ENCFF669EHC.bam released s3://encode-public/2015/08/07/ff3d2a82-1eb1-4b58-8a45-fd1796f1063e/ENCFF669EHC.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF677DWG bigWig bigWig read-depth normalized signal ce10 ENCSR310FMI Control ChIP-seq /worm-donors/ENCDO011RXQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180985/'], '@type': ['Target', 'Item'], 'name': 'syd-9-celegans', 'label': 'syd-9', '@id': '/targets/syd-9-celegans/', 'title': 'syd-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'ee96ead1-a816-4444-b501-cdc2c68344b0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF669EHC/ 10061416 Kevin White, UChicago ac4cf8ddb68e3f34c4cebe828dfbccf1 https://www.encodeproject.org/files/ENCFF677DWG/@@download/ENCFF677DWG.bigWig released s3://encode-public/2015/10/02/25b8bd5d-966d-4146-8d00-02b642505911/ENCFF677DWG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF140KHD bigWig bigWig signal of unique reads ce10 ENCSR310FMI Control ChIP-seq /worm-donors/ENCDO011RXQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180985/'], '@type': ['Target', 'Item'], 'name': 'syd-9-celegans', 'label': 'syd-9', '@id': '/targets/syd-9-celegans/', 'title': 'syd-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'ee96ead1-a816-4444-b501-cdc2c68344b0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF669EHC/ 9994226 Kevin White, UChicago 19a9a776794d9932e42adc92385234ae https://www.encodeproject.org/files/ENCFF140KHD/@@download/ENCFF140KHD.bigWig released s3://encode-public/2015/10/02/6bea78d8-a565-492e-a0ff-5560ef3f1adb/ENCFF140KHD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF755GQF bam bam alignments ce11 ENCSR310FMI Control ChIP-seq /worm-donors/ENCDO011RXQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180985/'], '@type': ['Target', 'Item'], 'name': 'syd-9-celegans', 'label': 'syd-9', '@id': '/targets/syd-9-celegans/', 'title': 'syd-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'ee96ead1-a816-4444-b501-cdc2c68344b0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF288UZE/ 600944184 Kevin White, UChicago 21bd053caadff8bb13aacc8430fe1ec4 https://www.encodeproject.org/files/ENCFF755GQF/@@download/ENCFF755GQF.bam released s3://encode-public/2016/01/20/a225dcde-cea4-46e2-8cbf-bdd83d8412d7/ENCFF755GQF.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF919QFV bigWig bigWig signal of unique reads ce11 ENCSR310FMI Control ChIP-seq /worm-donors/ENCDO011RXQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180985/'], '@type': ['Target', 'Item'], 'name': 'syd-9-celegans', 'label': 'syd-9', '@id': '/targets/syd-9-celegans/', 'title': 'syd-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'ee96ead1-a816-4444-b501-cdc2c68344b0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF755GQF/ 9992914 Kevin White, UChicago 40a4d9b3eb38201d3d85a6381a6a7367 https://www.encodeproject.org/files/ENCFF919QFV/@@download/ENCFF919QFV.bigWig released s3://encode-public/2016/02/03/ea8dd241-7172-4443-a9c2-2a06f60d4b3a/ENCFF919QFV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF674REM bigWig bigWig read-depth normalized signal ce11 ENCSR310FMI Control ChIP-seq /worm-donors/ENCDO011RXQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180985/'], '@type': ['Target', 'Item'], 'name': 'syd-9-celegans', 'label': 'syd-9', '@id': '/targets/syd-9-celegans/', 'title': 'syd-9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'ee96ead1-a816-4444-b501-cdc2c68344b0', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF755GQF/ 10059671 Kevin White, UChicago 6d37c80fad522017ef19acd7cd5017e8 https://www.encodeproject.org/files/ENCFF674REM/@@download/ENCFF674REM.bigWig released s3://encode-public/2016/02/03/179105ed-10ad-4a93-938f-e8f7b0dd3999/ENCFF674REM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF388NBH fastq fastq reads ENCSR425VYE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MYC'], 'aliases': ['michael-snyder:TS-141'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4609/'], '@type': ['Target', 'Item'], 'label': 'MYC', 'title': 'MYC (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcb24156-d919-4d8c-995f-a53cdfb874ce', 'schema_version': '14', 'name': 'MYC-human', '@id': '/targets/MYC-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF520WOI/ 2544114960 Michael Snyder, Stanford dc1a8e66edd774688e0b490b44ee2df2 SRA:SRR14849547 https://www.encodeproject.org/files/ENCFF388NBH/@@download/ENCFF388NBH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/14/68a83f62-2ff1-418b-acea-b1b8e7c24b21/ENCFF388NBH.fastq.gz mild to moderate bottlenecking ENCFF520WOI fastq fastq reads ENCSR425VYE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MYC'], 'aliases': ['michael-snyder:TS-141'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4609/'], '@type': ['Target', 'Item'], 'label': 'MYC', 'title': 'MYC (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcb24156-d919-4d8c-995f-a53cdfb874ce', 'schema_version': '14', 'name': 'MYC-human', '@id': '/targets/MYC-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF388NBH/ 2703698687 Michael Snyder, Stanford fdbc9d2d53ac222e678f294200a2e6bb SRA:SRR14849547 https://www.encodeproject.org/files/ENCFF520WOI/@@download/ENCFF520WOI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/14/da5986a3-58d7-4c07-8e87-b876164751ae/ENCFF520WOI.fastq.gz mild to moderate bottlenecking ENCFF477EVU bam bam unfiltered alignments GRCh38 ENCSR425VYE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MYC'], 'aliases': ['michael-snyder:TS-141'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4609/'], '@type': ['Target', 'Item'], 'label': 'MYC', 'title': 'MYC (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcb24156-d919-4d8c-995f-a53cdfb874ce', 'schema_version': '14', 'name': 'MYC-human', '@id': '/targets/MYC-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF388NBH/, /files/ENCFF520WOI/ 5099677389 ENCODE Processing Pipeline 9202d5201553e35a564160dbf6c47972 https://www.encodeproject.org/files/ENCFF477EVU/@@download/ENCFF477EVU.bam released s3://encode-public/2020/04/21/c13c0791-5e0e-4acc-ac65-5b7ed0c5dae6/ENCFF477EVU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF676PPE bam bam alignments GRCh38 ENCSR425VYE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MYC'], 'aliases': ['michael-snyder:TS-141'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4609/'], '@type': ['Target', 'Item'], 'label': 'MYC', 'title': 'MYC (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bcb24156-d919-4d8c-995f-a53cdfb874ce', 'schema_version': '14', 'name': 'MYC-human', '@id': '/targets/MYC-human/', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF388NBH/, /files/ENCFF520WOI/ 4051702261 ENCODE Processing Pipeline 15de6fb33090641b6a2566debb274641 https://www.encodeproject.org/files/ENCFF676PPE/@@download/ENCFF676PPE.bam released s3://encode-public/2020/04/21/ec9f36a6-5cf5-4a31-b183-f71d8a666947/ENCFF676PPE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF974AXQ fastq fastq reads ENCSR178IVN Control ChIP-seq /worm-donors/ENCDO496IXI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188539/'], '@type': ['Target', 'Item'], 'name': 'hlh-6-celegans', 'label': 'hlh-6', '@id': '/targets/hlh-6-celegans/', 'title': 'hlh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '169f91d0-8466-49d4-b40e-604f27016698', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 652174788 Kevin White, UChicago 845cbc824f36345394b9446a7421e6f2 https://www.encodeproject.org/files/ENCFF974AXQ/@@download/ENCFF974AXQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/aab27626-f097-43b1-bef9-13a5443effc5/ENCFF974AXQ.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF917HVA bam bam alignments ce10 ENCSR178IVN Control ChIP-seq /worm-donors/ENCDO496IXI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188539/'], '@type': ['Target', 'Item'], 'name': 'hlh-6-celegans', 'label': 'hlh-6', '@id': '/targets/hlh-6-celegans/', 'title': 'hlh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '169f91d0-8466-49d4-b40e-604f27016698', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF974AXQ/ 930745721 Kevin White, UChicago cf49ab6eee99a2e459011e0320b9a622 https://www.encodeproject.org/files/ENCFF917HVA/@@download/ENCFF917HVA.bam released s3://encode-public/2015/08/19/fcd591ac-9ff0-4333-a5fb-d772049d3642/ENCFF917HVA.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF042BOF bigWig bigWig signal of unique reads ce10 ENCSR178IVN Control ChIP-seq /worm-donors/ENCDO496IXI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188539/'], '@type': ['Target', 'Item'], 'name': 'hlh-6-celegans', 'label': 'hlh-6', '@id': '/targets/hlh-6-celegans/', 'title': 'hlh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '169f91d0-8466-49d4-b40e-604f27016698', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF917HVA/ 9948312 Kevin White, UChicago 18cdaa57342b2cd1f4a14e91507a4f7f https://www.encodeproject.org/files/ENCFF042BOF/@@download/ENCFF042BOF.bigWig released s3://encode-public/2015/10/02/c880b483-3589-456a-8d91-2eccb2a65918/ENCFF042BOF.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF656IEU bigWig bigWig read-depth normalized signal ce10 ENCSR178IVN Control ChIP-seq /worm-donors/ENCDO496IXI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188539/'], '@type': ['Target', 'Item'], 'name': 'hlh-6-celegans', 'label': 'hlh-6', '@id': '/targets/hlh-6-celegans/', 'title': 'hlh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '169f91d0-8466-49d4-b40e-604f27016698', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF917HVA/ 9952251 Kevin White, UChicago 8777ed7e196973cd4c3bd600fd9330cd https://www.encodeproject.org/files/ENCFF656IEU/@@download/ENCFF656IEU.bigWig released s3://encode-public/2015/10/02/62911d6f-7cbb-45b9-a903-98f02fd3bbcf/ENCFF656IEU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF884BSY bam bam alignments ce11 ENCSR178IVN Control ChIP-seq /worm-donors/ENCDO496IXI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188539/'], '@type': ['Target', 'Item'], 'name': 'hlh-6-celegans', 'label': 'hlh-6', '@id': '/targets/hlh-6-celegans/', 'title': 'hlh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '169f91d0-8466-49d4-b40e-604f27016698', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF974AXQ/ 931519137 Kevin White, UChicago d3e12972edb9d29318e1202597027e56 https://www.encodeproject.org/files/ENCFF884BSY/@@download/ENCFF884BSY.bam released s3://encode-public/2016/01/17/116cc213-5a0a-4f69-8ab7-444eb8a1fc10/ENCFF884BSY.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF851XVL bigWig bigWig signal of unique reads ce11 ENCSR178IVN Control ChIP-seq /worm-donors/ENCDO496IXI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188539/'], '@type': ['Target', 'Item'], 'name': 'hlh-6-celegans', 'label': 'hlh-6', '@id': '/targets/hlh-6-celegans/', 'title': 'hlh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '169f91d0-8466-49d4-b40e-604f27016698', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF884BSY/ 9946843 Kevin White, UChicago 27d53fbab1c564624e4dec049420c37d https://www.encodeproject.org/files/ENCFF851XVL/@@download/ENCFF851XVL.bigWig released s3://encode-public/2016/02/03/868c4e14-e840-4ef2-bee7-68875a884f97/ENCFF851XVL.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF672ZLT bigWig bigWig read-depth normalized signal ce11 ENCSR178IVN Control ChIP-seq /worm-donors/ENCDO496IXI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/188539/'], '@type': ['Target', 'Item'], 'name': 'hlh-6-celegans', 'label': 'hlh-6', '@id': '/targets/hlh-6-celegans/', 'title': 'hlh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '169f91d0-8466-49d4-b40e-604f27016698', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF884BSY/ 9946511 Kevin White, UChicago 7e3d84f2cfc2abb7c2aade0ca88e05ef https://www.encodeproject.org/files/ENCFF672ZLT/@@download/ENCFF672ZLT.bigWig released s3://encode-public/2016/02/03/16508b05-d35a-40cd-9a78-363bc481cb20/ENCFF672ZLT.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF336VID fastq fastq reads ENCSR356KYP Control ChIP-seq /worm-donors/ENCDO513TZR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181907/'], '@type': ['Target', 'Item'], 'name': 'fkh-6-celegans', 'label': 'fkh-6', '@id': '/targets/fkh-6-celegans/', 'title': 'fkh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '769235cd-b052-4b31-a414-79e1d5fa80c5', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 50 single-ended 791390858 Kevin White, UChicago 5ab819763e862b359ea6b875f5b5a861 https://www.encodeproject.org/files/ENCFF336VID/@@download/ENCFF336VID.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/5e7aad42-51e7-48a7-a4ee-68cd844b1519/ENCFF336VID.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF066TGU bam bam alignments ce10 ENCSR356KYP Control ChIP-seq /worm-donors/ENCDO513TZR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181907/'], '@type': ['Target', 'Item'], 'name': 'fkh-6-celegans', 'label': 'fkh-6', '@id': '/targets/fkh-6-celegans/', 'title': 'fkh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '769235cd-b052-4b31-a414-79e1d5fa80c5', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF336VID/ 940701372 Kevin White, UChicago e5b7c7842d2eb985e86f50deb0349e78 https://www.encodeproject.org/files/ENCFF066TGU/@@download/ENCFF066TGU.bam released s3://encode-public/2015/08/19/5ff1ce43-95de-4597-9e51-183aac8e893a/ENCFF066TGU.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF446TXD bigWig bigWig signal of unique reads ce10 ENCSR356KYP Control ChIP-seq /worm-donors/ENCDO513TZR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181907/'], '@type': ['Target', 'Item'], 'name': 'fkh-6-celegans', 'label': 'fkh-6', '@id': '/targets/fkh-6-celegans/', 'title': 'fkh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '769235cd-b052-4b31-a414-79e1d5fa80c5', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF066TGU/ 9959322 Kevin White, UChicago f2ec0e864ff74b6090b9413bdbfb4701 https://www.encodeproject.org/files/ENCFF446TXD/@@download/ENCFF446TXD.bigWig released s3://encode-public/2015/10/02/d5281129-6c65-4603-b8a7-91f06d2f213f/ENCFF446TXD.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF192QOY bigWig bigWig read-depth normalized signal ce10 ENCSR356KYP Control ChIP-seq /worm-donors/ENCDO513TZR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181907/'], '@type': ['Target', 'Item'], 'name': 'fkh-6-celegans', 'label': 'fkh-6', '@id': '/targets/fkh-6-celegans/', 'title': 'fkh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '769235cd-b052-4b31-a414-79e1d5fa80c5', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF066TGU/ 9957453 Kevin White, UChicago 1d4b139b39180f5579b9a09341271f7a https://www.encodeproject.org/files/ENCFF192QOY/@@download/ENCFF192QOY.bigWig released s3://encode-public/2015/10/02/a7a0ac03-8307-4106-b88d-8a24c2956306/ENCFF192QOY.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF177YPM bam bam alignments ce11 ENCSR356KYP Control ChIP-seq /worm-donors/ENCDO513TZR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181907/'], '@type': ['Target', 'Item'], 'name': 'fkh-6-celegans', 'label': 'fkh-6', '@id': '/targets/fkh-6-celegans/', 'title': 'fkh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '769235cd-b052-4b31-a414-79e1d5fa80c5', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF336VID/ 941526829 Kevin White, UChicago 6c5d4538981635eb058f8c7549878608 https://www.encodeproject.org/files/ENCFF177YPM/@@download/ENCFF177YPM.bam released s3://encode-public/2016/01/17/ffd9715e-6070-47ee-bf6d-6f274a4b3c10/ENCFF177YPM.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF729IXN bigWig bigWig signal of unique reads ce11 ENCSR356KYP Control ChIP-seq /worm-donors/ENCDO513TZR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181907/'], '@type': ['Target', 'Item'], 'name': 'fkh-6-celegans', 'label': 'fkh-6', '@id': '/targets/fkh-6-celegans/', 'title': 'fkh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '769235cd-b052-4b31-a414-79e1d5fa80c5', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF177YPM/ 9952547 Kevin White, UChicago 2a9eba0052fcca890282daeb79c7b453 https://www.encodeproject.org/files/ENCFF729IXN/@@download/ENCFF729IXN.bigWig released s3://encode-public/2016/02/03/258b4b2d-de22-4761-b207-1bb2b1e035b1/ENCFF729IXN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF730PRH bigWig bigWig read-depth normalized signal ce11 ENCSR356KYP Control ChIP-seq /worm-donors/ENCDO513TZR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181907/'], '@type': ['Target', 'Item'], 'name': 'fkh-6-celegans', 'label': 'fkh-6', '@id': '/targets/fkh-6-celegans/', 'title': 'fkh-6 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '769235cd-b052-4b31-a414-79e1d5fa80c5', 'status': 'released'} DNA 2016-05-24 modERN sonication (generic microtip) 1 1_1 /files/ENCFF177YPM/ 9953772 Kevin White, UChicago 0aee78feda346d55703c52ef8f5223a7 https://www.encodeproject.org/files/ENCFF730PRH/@@download/ENCFF730PRH.bigWig released s3://encode-public/2016/02/03/b1ae7cc7-f085-44c7-96c8-b01df48c45d8/ENCFF730PRH.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF339GDO fastq fastq reads ENCSR240SYZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF997CZF/ 3292096832 Richard Myers, HAIB 7b200b45a269e9f6b0f67abfc1ff9de4 SRA:SRR8660196 https://www.encodeproject.org/files/ENCFF339GDO/@@download/ENCFF339GDO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/ff6c2e15-419c-4d0a-a187-24696ae880d3/ENCFF339GDO.fastq.gz ENCFF997CZF fastq fastq reads ENCSR240SYZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF339GDO/ 3443922473 Richard Myers, HAIB 243dea5d90f68e6a88f88171dcd7356b SRA:SRR8660196 https://www.encodeproject.org/files/ENCFF997CZF/@@download/ENCFF997CZF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/ebd9f873-4042-4fa3-a24a-28f041a8aab7/ENCFF997CZF.fastq.gz ENCFF509IAH bam bam unfiltered alignments hg19 ENCSR240SYZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF339GDO/, /files/ENCFF997CZF/ 7765597468 ENCODE Processing Pipeline 684cb24481a1b7d2cb1f80cd446d76ae https://www.encodeproject.org/files/ENCFF509IAH/@@download/ENCFF509IAH.bam released s3://encode-public/2017/02/02/6cc804a6-06a8-43f0-ad4e-869cd0897e14/ENCFF509IAH.bam 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https://www.encodeproject.org/files/ENCFF406GRT/@@download/ENCFF406GRT.bam released s3://encode-public/2017/02/02/c0df0528-4a7e-409f-84ea-57797c234828/ENCFF406GRT.bam ENCODE3 GRCh38 archived ENCFF518UMI bam bam alignments GRCh38 ENCSR240SYZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF339GDO/, /files/ENCFF997CZF/ 5599820120 ENCODE Processing Pipeline b495ab3248d6f57656980938fb664cbf https://www.encodeproject.org/files/ENCFF518UMI/@@download/ENCFF518UMI.bam released s3://encode-public/2017/02/02/6b790852-3448-41d8-bd38-1d24c71606fe/ENCFF518UMI.bam ENCODE3 GRCh38 archived ENCFF338YEW bam bam alignments GRCh38 ENCSR240SYZ Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF339GDO/, 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sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2, 1_3 76 /files/ENCFF110MCL/, /files/ENCFF628ACN/, /files/ENCFF669SFS/, /files/ENCFF378TZE/, /files/ENCFF374GFS/, /files/ENCFF900OVK/, /files/ENCFF065YVM/ 6245122771 ENCODE Processing Pipeline 7545bb2a7d11f82eab8581fed0ee0435 https://www.encodeproject.org/files/ENCFF677PFX/@@download/ENCFF677PFX.bam released s3://encode-public/2020/09/19/ee83b822-856d-4a99-8e7f-084ea199a255/ENCFF677PFX.bam ENCODE4 v1.5.1 GRCh38 released ENCFF689CVK bam bam alignments GRCh38 ENCSR708OCZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2, 1_3 76 /files/ENCFF110MCL/, /files/ENCFF628ACN/, /files/ENCFF669SFS/, /files/ENCFF378TZE/, /files/ENCFF374GFS/, /files/ENCFF900OVK/, /files/ENCFF065YVM/ 5150646618 ENCODE Processing Pipeline 2207b5ca24a1e13f577ea85f112c90cc https://www.encodeproject.org/files/ENCFF689CVK/@@download/ENCFF689CVK.bam released 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s3://encode-public/2019/04/27/595b71ef-e17a-4ebd-98a4-5cd56277f7cb/ENCFF065YVM.fastq.gz ENCFF797QOI bam bam unfiltered alignments hg19 ENCSR708OCZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2, 1_3 76 /files/ENCFF378TZE/, /files/ENCFF900OVK/, /files/ENCFF807MUK/, /files/ENCFF374GFS/, /files/ENCFF628ACN/, /files/ENCFF065YVM/, /files/ENCFF669SFS/ 6265235162 ENCODE Processing Pipeline 8af56699983394b73f637c7609f3e3d3 https://www.encodeproject.org/files/ENCFF797QOI/@@download/ENCFF797QOI.bam released s3://encode-public/2019/06/12/1be2b619-8a96-42c9-8242-b437f8b02f13/ENCFF797QOI.bam ENCODE3 hg19 archived ENCFF423STA bam bam alignments hg19 ENCSR708OCZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2, 1_3 76 /files/ENCFF378TZE/, /files/ENCFF900OVK/, /files/ENCFF807MUK/, /files/ENCFF374GFS/, /files/ENCFF628ACN/, /files/ENCFF065YVM/, /files/ENCFF669SFS/ 5137121422 ENCODE Processing Pipeline ee3716ae8ea5e9776c9f208d89fa8c87 https://www.encodeproject.org/files/ENCFF423STA/@@download/ENCFF423STA.bam released s3://encode-public/2019/06/12/466e3ee2-99e3-4c6a-824e-1b577ab700cf/ENCFF423STA.bam ENCODE3 hg19 archived ENCFF982TWX bam bam alignments GRCh38 ENCSR708OCZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2, 1_3 76 /files/ENCFF643CGH/, /files/ENCFF378TZE/, /files/ENCFF900OVK/, /files/ENCFF374GFS/, /files/ENCFF628ACN/, /files/ENCFF065YVM/, /files/ENCFF669SFS/ 5144121218 ENCODE Processing Pipeline a4d61fb27563ec2ae2e0441efb5fb29c https://www.encodeproject.org/files/ENCFF982TWX/@@download/ENCFF982TWX.bam released s3://encode-public/2019/06/12/da4f9b52-5eb9-49c3-b634-1e1fcf7062ff/ENCFF982TWX.bam ENCODE3 GRCh38 archived ENCFF027ONR bam bam unfiltered alignments GRCh38 ENCSR708OCZ Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001211 Peyer's patch tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2, 1_3 76 /files/ENCFF643CGH/, /files/ENCFF378TZE/, /files/ENCFF900OVK/, /files/ENCFF374GFS/, /files/ENCFF628ACN/, /files/ENCFF065YVM/, /files/ENCFF669SFS/ 6279971816 ENCODE Processing Pipeline 8678121e4380310e388ad57c6c756592 https://www.encodeproject.org/files/ENCFF027ONR/@@download/ENCFF027ONR.bam released s3://encode-public/2019/06/12/4bd17273-c286-4939-b5e8-ec9511712cfd/ENCFF027ONR.bam ENCODE3 GRCh38 archived ENCFF337OIL tagAlign tagAlign alignments hg19 ENCSR300BKE Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF176PQX/ 253409848 Anshul Kundaje, Stanford 9fb46c7ca789bf86b7b542b6c5a0d304 https://www.encodeproject.org/files/ENCFF337OIL/@@download/ENCFF337OIL.tagAlign.gz archived s3://encode-public/2016/03/30/ec2967fa-4369-47e0-9ed6-3325f39e0dde/ENCFF337OIL.tagAlign.gz Lab custom hg19 archived low read length ENCFF176PQX fastq fastq reads ENCSR300BKE Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2073455460 Zhiping Weng, UMass f4c7d662cc4a4ff3efd6f42999ff8d1c SRA:SRR353350 https://www.encodeproject.org/files/ENCFF176PQX/@@download/ENCFF176PQX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/22/4e2b3df2-ec20-43c9-9415-bcd2f5ac85fe/ENCFF176PQX.fastq.gz low read length ENCFF640PET bam bam unfiltered alignments GRCh38 ENCSR300BKE Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF176PQX/, /files/ENCFF110MCL/ 2467923486 ENCODE Processing Pipeline 550d33c848e0d31c2ea8b7f32bfcd37e 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/files/ENCFF643CGH/, /files/ENCFF176PQX/ 1522950262 ENCODE Processing Pipeline 4f45607f4917cf2bb11426e4f84a89ae https://www.encodeproject.org/files/ENCFF241VUX/@@download/ENCFF241VUX.bam released s3://encode-public/2016/12/19/3130e712-20c1-4e10-b12d-27457f047e4b/ENCFF241VUX.bam ENCODE3 GRCh38 archived low read length ENCFF597TDE bam bam alignments hg19 ENCSR300BKE Control ChIP-seq /human-donors/ENCDO000AAW/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF176PQX/ 1522833547 ENCODE Processing Pipeline 693cb3eedee59cf26b82c274413b8f73 https://www.encodeproject.org/files/ENCFF597TDE/@@download/ENCFF597TDE.bam released s3://encode-public/2016/12/19/c33bcfcf-c07c-45bd-8a2c-fd843c72b6a5/ENCFF597TDE.bam ENCODE3 hg19 archived low read length ENCFF761KZF bigWig bigWig read-depth normalized signal dm6 ENCSR409KGR Control ChIP-seq /fly-donors/ENCDO990GUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31648/'], '@type': ['Target', 'Item'], 'name': 'CG3032-dmelanogaster', 'label': 'CG3032', '@id': '/targets/CG3032-dmelanogaster/', 'title': 'CG3032 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d2af7a7-ec78-49e4-9bc0-4bece5bd8ccb', 'status': 'released'} dm3 X 6901342 6922342 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF129AIH/ 17731585 Kevin White, UChicago 6f9f2354c5adc1ac10e1424432ed84cd https://www.encodeproject.org/files/ENCFF761KZF/@@download/ENCFF761KZF.bigWig released s3://encode-public/2019/06/18/98d84e80-0f4d-46c0-acee-ac82367e29bc/ENCFF761KZF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF799ULH fastq fastq reads ENCSR409KGR Control ChIP-seq /fly-donors/ENCDO990GUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31648/'], '@type': ['Target', 'Item'], 'name': 'CG3032-dmelanogaster', 'label': 'CG3032', '@id': '/targets/CG3032-dmelanogaster/', 'title': 'CG3032 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d2af7a7-ec78-49e4-9bc0-4bece5bd8ccb', 'status': 'released'} dm3 X 6901342 6922342 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 840366240 Kevin White, UChicago 518c911ef2dd201cf6fdd2e8b4f296f5 https://www.encodeproject.org/files/ENCFF799ULH/@@download/ENCFF799ULH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/e3b5a39b-d88f-45b1-9463-e089c5809d06/ENCFF799ULH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF129AIH bam bam alignments dm6 ENCSR409KGR Control ChIP-seq /fly-donors/ENCDO990GUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31648/'], '@type': ['Target', 'Item'], 'name': 'CG3032-dmelanogaster', 'label': 'CG3032', '@id': '/targets/CG3032-dmelanogaster/', 'title': 'CG3032 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '8d2af7a7-ec78-49e4-9bc0-4bece5bd8ccb', 'status': 'released'} dm3 X 6901342 6922342 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF799ULH/, /files/ENCFF479RCH/ 1140260720 Kevin White, UChicago aa8f7b57d99345ab2cae37885881ff77 https://www.encodeproject.org/files/ENCFF129AIH/@@download/ENCFF129AIH.bam released s3://encode-public/2019/06/18/93902d22-8003-4ff6-9463-a0d54e650873/ENCFF129AIH.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF141BRF bigWig bigWig signal of unique reads dm6 ENCSR409KGR Control ChIP-seq /fly-donors/ENCDO990GUQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', 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2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF472CPZ/ 1233608758 Richard Myers, HAIB ca70392a45071e2afe9f84f62a6e51b7 SRA:SRR6214056 https://www.encodeproject.org/files/ENCFF007TGS/@@download/ENCFF007TGS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/a1765cfc-e023-46cc-ae7c-5d95c1c19a7b/ENCFF007TGS.fastq.gz low read depth ENCFF472CPZ fastq fastq reads ENCSR949XFR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF007TGS/ 1265596267 Richard Myers, HAIB a17d025d07d2aab685d74e26a80e1b82 SRA:SRR6214056 https://www.encodeproject.org/files/ENCFF472CPZ/@@download/ENCFF472CPZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/ae99180e-7881-42e4-b8fd-fc0cebd29f85/ENCFF472CPZ.fastq.gz low read depth ENCFF071TLI bam bam unfiltered alignments hg19 ENCSR949XFR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007TGS/, /files/ENCFF807MUK/, /files/ENCFF472CPZ/ 2993032262 ENCODE Processing Pipeline cbe6795fd3c6e871a75ffd57cdfd00ee https://www.encodeproject.org/files/ENCFF071TLI/@@download/ENCFF071TLI.bam released s3://encode-public/2017/02/02/21d4b399-f655-4526-91d4-59e2081b2b9d/ENCFF071TLI.bam ENCODE3 hg19 archived low read depth ENCFF247ICN bam bam unfiltered alignments GRCh38 ENCSR949XFR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007TGS/, /files/ENCFF643CGH/, /files/ENCFF472CPZ/ 3004193673 ENCODE Processing Pipeline 9d5317b016ecbe5dd9411f8a7481b7b2 https://www.encodeproject.org/files/ENCFF247ICN/@@download/ENCFF247ICN.bam released s3://encode-public/2017/02/02/5bfaaad8-0c7d-4199-ade4-82f1ba3ee06c/ENCFF247ICN.bam ENCODE3 GRCh38 archived low read depth ENCFF272XNP bam bam alignments hg19 ENCSR949XFR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007TGS/, /files/ENCFF807MUK/, /files/ENCFF472CPZ/ 2183825538 ENCODE Processing Pipeline a9fa3c404bb5787bec5b0b759ee46f75 https://www.encodeproject.org/files/ENCFF272XNP/@@download/ENCFF272XNP.bam released s3://encode-public/2017/02/02/543f321d-9188-4055-b5af-1ba59195ee03/ENCFF272XNP.bam ENCODE3 hg19 archived low read depth ENCFF535QLE bam bam alignments GRCh38 ENCSR949XFR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF007TGS/, /files/ENCFF643CGH/, /files/ENCFF472CPZ/ 2186870989 ENCODE Processing Pipeline 5293b47cf1ad50a2134ed163b87d0629 https://www.encodeproject.org/files/ENCFF535QLE/@@download/ENCFF535QLE.bam released s3://encode-public/2017/02/02/97f473fd-446e-47ed-bbc0-d70906d557bd/ENCFF535QLE.bam ENCODE3 GRCh38 archived low read depth ENCFF728ECC bam bam alignments GRCh38 ENCSR949XFR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF007TGS/, /files/ENCFF472CPZ/ 2160662065 ENCODE Processing Pipeline 893b98f5352d9c747ac8b5210c784dfe https://www.encodeproject.org/files/ENCFF728ECC/@@download/ENCFF728ECC.bam released s3://encode-public/2020/06/06/236a0a80-8160-47e1-bfc3-ecb9ea64e14d/ENCFF728ECC.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF431BJM bam bam unfiltered alignments GRCh38 ENCSR949XFR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF007TGS/, /files/ENCFF472CPZ/ 3147083616 ENCODE Processing Pipeline 03460c6f52ae7a09122e3b2386414b42 https://www.encodeproject.org/files/ENCFF431BJM/@@download/ENCFF431BJM.bam released s3://encode-public/2020/06/06/c9a9af17-b377-49e5-bd35-411495cee6b4/ENCFF431BJM.bam ENCODE4 v1.4.0 GRCh38 released low read depth ENCFF764LHE bigWig bigWig read-depth normalized signal dm6 ENCSR477RDG Control ChIP-seq /fly-donors/ENCDO412AEK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42952/'], '@type': ['Target', 'Item'], 'name': 'Ets96B-dmelanogaster', 'label': 'Ets96B', '@id': '/targets/Ets96B-dmelanogaster/', 'title': 'Ets96B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eccc7a7-5ee7-4bcc-83fd-06e2d7566c28', 'status': 'released'} dm3 3R 23478590 23500488 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF872MCR/ 17642830 Kevin White, UChicago 6cad6a2e2670d953492c3a174200d62f https://www.encodeproject.org/files/ENCFF764LHE/@@download/ENCFF764LHE.bigWig released s3://encode-public/2019/06/18/85b57881-254f-4827-9d6a-d7d704d88906/ENCFF764LHE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF741UAO fastq fastq reads ENCSR477RDG Control ChIP-seq /fly-donors/ENCDO412AEK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42952/'], '@type': ['Target', 'Item'], 'name': 'Ets96B-dmelanogaster', 'label': 'Ets96B', '@id': '/targets/Ets96B-dmelanogaster/', 'title': 'Ets96B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eccc7a7-5ee7-4bcc-83fd-06e2d7566c28', 'status': 'released'} dm3 3R 23478590 23500488 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 703114540 Kevin White, UChicago 8ff6b8cf48125a4b1de989d3a1a31ab1 https://www.encodeproject.org/files/ENCFF741UAO/@@download/ENCFF741UAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/d23c7b6f-c567-4c06-b0c1-7b2960b1600d/ENCFF741UAO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF872MCR bam bam alignments dm6 ENCSR477RDG Control ChIP-seq /fly-donors/ENCDO412AEK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42952/'], '@type': ['Target', 'Item'], 'name': 'Ets96B-dmelanogaster', 'label': 'Ets96B', '@id': '/targets/Ets96B-dmelanogaster/', 'title': 'Ets96B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eccc7a7-5ee7-4bcc-83fd-06e2d7566c28', 'status': 'released'} dm3 3R 23478590 23500488 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF741UAO/, /files/ENCFF479RCH/ 942373677 Kevin White, UChicago e1972e15a96e10d0fc0185b83e7ae58a https://www.encodeproject.org/files/ENCFF872MCR/@@download/ENCFF872MCR.bam released s3://encode-public/2019/06/18/ad890948-4c92-4440-980c-ca25a02c1fec/ENCFF872MCR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF247OSD bigWig bigWig signal of unique reads dm6 ENCSR477RDG Control ChIP-seq /fly-donors/ENCDO412AEK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42952/'], '@type': ['Target', 'Item'], 'name': 'Ets96B-dmelanogaster', 'label': 'Ets96B', '@id': '/targets/Ets96B-dmelanogaster/', 'title': 'Ets96B (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '3eccc7a7-5ee7-4bcc-83fd-06e2d7566c28', 'status': 'released'} dm3 3R 23478590 23500488 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF872MCR/ 17629089 Kevin White, UChicago 4945f56d9e1d6b0a02de8cbfe1ff3878 https://www.encodeproject.org/files/ENCFF247OSD/@@download/ENCFF247OSD.bigWig released s3://encode-public/2019/06/18/24915206-a846-434e-82f3-09086b3f3633/ENCFF247OSD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF320ZIS bam bam redacted alignments GRCh38 ENCSR919MGB Control ChIP-seq /human-donors/ENCDO273TST/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF975AVB/, /files/ENCFF592MYJ/ 472167276 ENCODE Processing Pipeline faa31297364f9203a3f6dc2002b7e58d https://www.encodeproject.org/files/ENCFF320ZIS/@@download/ENCFF320ZIS.bam released s3://encode-public/2017/11/09/4ee81346-5ace-4e8a-8503-c4b358f96072/ENCFF320ZIS.bam ENCODE3 GRCh38 archived ENCFF230OCJ bam bam redacted unfiltered alignments GRCh38 ENCSR919MGB Control ChIP-seq /human-donors/ENCDO273TST/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF643CGH/, /files/ENCFF975AVB/, /files/ENCFF592MYJ/ 611481956 ENCODE Processing Pipeline bdc3ac85f4577119bea61fb0d9d4d79d https://www.encodeproject.org/files/ENCFF230OCJ/@@download/ENCFF230OCJ.bam released s3://encode-public/2017/11/09/d8cdb550-3a3d-46a5-ae15-a705065166d8/ENCFF230OCJ.bam ENCODE3 GRCh38 archived ENCFF971RAI bam bam redacted unfiltered alignments hg19 ENCSR919MGB Control ChIP-seq /human-donors/ENCDO273TST/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF975AVB/, /files/ENCFF592MYJ/ 600269353 ENCODE Processing Pipeline e3092c6df3b1ced7c4694c5f1453cf7a https://www.encodeproject.org/files/ENCFF971RAI/@@download/ENCFF971RAI.bam released s3://encode-public/2018/01/20/867c7c35-e1a6-4c53-9d34-ed920d5d2728/ENCFF971RAI.bam ENCODE3 hg19 archived ENCFF583ITW bam bam redacted alignments hg19 ENCSR919MGB Control ChIP-seq /human-donors/ENCDO273TST/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF807MUK/, /files/ENCFF975AVB/, /files/ENCFF592MYJ/ 471326250 ENCODE Processing Pipeline 790c87161c780b3f799d1d6b7439ef0b https://www.encodeproject.org/files/ENCFF583ITW/@@download/ENCFF583ITW.bam released s3://encode-public/2018/01/20/2b6999bf-ee81-4d2d-bf97-78bbbb4f21c3/ENCFF583ITW.bam ENCODE3 hg19 archived ENCFF620XAN bam bam redacted alignments GRCh38 ENCSR919MGB Control ChIP-seq /human-donors/ENCDO273TST/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 76 /files/ENCFF064SYY/, /files/ENCFF110MCL/, /files/ENCFF300DOI/ 2693241710 ENCODE Processing Pipeline a93a97c68ddf7eb5e2b25d909af607ba https://www.encodeproject.org/files/ENCFF620XAN/@@download/ENCFF620XAN.bam released s3://encode-public/2021/01/28/3b39cfc0-e4cf-4fba-b488-1b9bb136badf/ENCFF620XAN.bam ENCODE4 v1.7.0 GRCh38 released ENCFF510SWK bigWig bigWig read-depth normalized signal dm6 ENCSR555KVU Control ChIP-seq /fly-donors/ENCDO018IAK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36156/'], '@type': ['Target', 'Item'], 'name': 'CG30020-dmelanogaster', 'label': 'CG30020', '@id': '/targets/CG30020-dmelanogaster/', 'title': 'CG30020 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e047a625-1f05-4667-b93e-568b5592b48f', 'status': 'released'} dm3 2R 6763933 6786270 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF389IIP/ 17898015 Kevin White, UChicago 6e494b2583fc1345efb53c10a00c2326 https://www.encodeproject.org/files/ENCFF510SWK/@@download/ENCFF510SWK.bigWig released s3://encode-public/2019/06/18/13580e52-3427-40ca-b075-e39e513ad4cf/ENCFF510SWK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF402HDY fastq fastq reads ENCSR555KVU Control ChIP-seq /fly-donors/ENCDO018IAK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36156/'], '@type': ['Target', 'Item'], 'name': 'CG30020-dmelanogaster', 'label': 'CG30020', '@id': '/targets/CG30020-dmelanogaster/', 'title': 'CG30020 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e047a625-1f05-4667-b93e-568b5592b48f', 'status': 'released'} dm3 2R 6763933 6786270 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 2134099414 Kevin White, UChicago b856ccd146c2101f4b52fd3d6643881b https://www.encodeproject.org/files/ENCFF402HDY/@@download/ENCFF402HDY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/56c107bc-1edb-471f-97d9-a1c0db450d7d/ENCFF402HDY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF389IIP bam bam alignments dm6 ENCSR555KVU Control ChIP-seq /fly-donors/ENCDO018IAK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36156/'], '@type': ['Target', 'Item'], 'name': 'CG30020-dmelanogaster', 'label': 'CG30020', '@id': '/targets/CG30020-dmelanogaster/', 'title': 'CG30020 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e047a625-1f05-4667-b93e-568b5592b48f', 'status': 'released'} dm3 2R 6763933 6786270 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF402HDY/, /files/ENCFF479RCH/ 2899152615 Kevin White, UChicago 19b147dea92ffa915cfbb0c736e27e19 https://www.encodeproject.org/files/ENCFF389IIP/@@download/ENCFF389IIP.bam released s3://encode-public/2019/06/18/25837e84-ae9a-4633-8b96-e32be32cdcca/ENCFF389IIP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF996RCL bigWig bigWig signal of unique reads dm6 ENCSR555KVU Control ChIP-seq /fly-donors/ENCDO018IAK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36156/'], '@type': ['Target', 'Item'], 'name': 'CG30020-dmelanogaster', 'label': 'CG30020', '@id': '/targets/CG30020-dmelanogaster/', 'title': 'CG30020 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e047a625-1f05-4667-b93e-568b5592b48f', 'status': 'released'} dm3 2R 6763933 6786270 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF389IIP/ 17846801 Kevin White, UChicago 9090b91c4ddf4d4e2a1afc2ed54ebec3 https://www.encodeproject.org/files/ENCFF996RCL/@@download/ENCFF996RCL.bigWig released s3://encode-public/2019/06/18/17f024df-0a84-491c-b5c9-763d41535bb3/ENCFF996RCL.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF821OPJ fastq fastq reads ENCSR761BHV Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1157441755 Kevin White, UChicago 7e87227343fa12ca6443833ac21fb158 https://www.encodeproject.org/files/ENCFF821OPJ/@@download/ENCFF821OPJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/1eb34d4e-a780-4341-a110-82866dcb3472/ENCFF821OPJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF488EPT bam bam alignments dm6 ENCSR761BHV Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF821OPJ/, /files/ENCFF479RCH/ 3087818223 Kevin White, UChicago 3ae4093b502ebcd6a77c4e28d25b7db2 https://www.encodeproject.org/files/ENCFF488EPT/@@download/ENCFF488EPT.bam released s3://encode-public/2019/04/13/b1500bf2-994a-48af-bc43-aeb36519f8b8/ENCFF488EPT.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF633WMA bigWig bigWig read-depth normalized signal dm6 ENCSR761BHV Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF488EPT/ 17943519 Kevin White, UChicago 956a17782525bce9c0578bd30cee9ef6 https://www.encodeproject.org/files/ENCFF633WMA/@@download/ENCFF633WMA.bigWig released s3://encode-public/2019/04/16/cf591601-e25c-4d4a-9a0f-2716edc90212/ENCFF633WMA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF824GEM bigWig bigWig signal of unique reads dm6 ENCSR761BHV Control ChIP-seq /fly-donors/ENCDO023HHO/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36278/'], '@type': ['Target', 'Item'], 'name': 'CG8290-dmelanogaster', 'label': 'CG8290', '@id': '/targets/CG8290-dmelanogaster/', 'title': 'CG8290 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'cc5e3593-1518-4cb3-9986-5506b46c6549', 'status': 'released'} dm3 2R 7858178 7865236 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF488EPT/ 17938555 Kevin White, UChicago 464645e1faf97c6de6cfd38af518101f https://www.encodeproject.org/files/ENCFF824GEM/@@download/ENCFF824GEM.bigWig released s3://encode-public/2019/04/16/990a5927-b701-4ad5-b394-8a4ea10e6585/ENCFF824GEM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF896ECQ fastq fastq reads ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF573DUG/ 3273237874 Michael Snyder, Stanford f21351a96fde33b0a1a33f8f0a144742 SRA:SRR6213887 https://www.encodeproject.org/files/ENCFF896ECQ/@@download/ENCFF896ECQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/c027c4b0-11f2-4a47-a7a5-91bea4a161a1/ENCFF896ECQ.fastq.gz mild to moderate bottlenecking ENCFF573DUG fastq fastq reads ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF896ECQ/ 2796226246 Michael Snyder, Stanford 0f452149b4837d76cf73cbf540cb5248 SRA:SRR6213887 https://www.encodeproject.org/files/ENCFF573DUG/@@download/ENCFF573DUG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/7697a85c-6af0-4800-acd2-2b080b21313e/ENCFF573DUG.fastq.gz mild to moderate bottlenecking ENCFF371ILP bam bam unfiltered alignments hg19 ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF896ECQ/, /files/ENCFF807MUK/, /files/ENCFF573DUG/ 5906919204 ENCODE Processing Pipeline d51358147e722dd0adefe4d11370cf7b https://www.encodeproject.org/files/ENCFF371ILP/@@download/ENCFF371ILP.bam released s3://encode-public/2017/03/17/4ee1c24c-7c56-496f-9618-23a8149ef164/ENCFF371ILP.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF071ZDQ bam bam unfiltered alignments GRCh38 ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF896ECQ/, /files/ENCFF643CGH/, /files/ENCFF573DUG/ 5913765360 ENCODE Processing Pipeline e59e7b9c8d18bfb054c7aacd1b9794d2 https://www.encodeproject.org/files/ENCFF071ZDQ/@@download/ENCFF071ZDQ.bam released s3://encode-public/2017/03/17/e906c844-64f4-4bfd-ae41-331a711679fc/ENCFF071ZDQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF693IBS bam bam alignments hg19 ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF896ECQ/, /files/ENCFF807MUK/, /files/ENCFF573DUG/ 4461685879 ENCODE Processing Pipeline 4ff6bcc8df15d1e749aeb6628eaf60af https://www.encodeproject.org/files/ENCFF693IBS/@@download/ENCFF693IBS.bam released s3://encode-public/2017/03/17/024cc8d5-80a7-4446-9675-153cc459b611/ENCFF693IBS.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF764CLL bam bam alignments GRCh38 ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF896ECQ/, /files/ENCFF643CGH/, /files/ENCFF573DUG/ 4469701424 ENCODE Processing Pipeline 3dafc3c7c6d6df2db61e4423ee6930b8 https://www.encodeproject.org/files/ENCFF764CLL/@@download/ENCFF764CLL.bam released s3://encode-public/2017/03/17/3a4429ae-5cd1-483f-9fd6-e086f4aca2c0/ENCFF764CLL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF334CAA bam bam unfiltered alignments GRCh38 ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF573DUG/, /files/ENCFF896ECQ/ 5907104185 ENCODE Processing Pipeline 4ccbc479a4720da577b114c313792857 https://www.encodeproject.org/files/ENCFF334CAA/@@download/ENCFF334CAA.bam released s3://encode-public/2020/06/02/2a68a791-03ad-4348-b2a1-5c7f3f4e58ea/ENCFF334CAA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF200OBF bam bam alignments GRCh38 ENCSR581RPO Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF573DUG/, /files/ENCFF896ECQ/ 4403071824 ENCODE Processing Pipeline 76fcf0afe7cb944ddb0a4d2c14cdbadd https://www.encodeproject.org/files/ENCFF200OBF/@@download/ENCFF200OBF.bam released s3://encode-public/2020/06/02/32d97a34-ef99-445c-aa47-3840a2cd0d42/ENCFF200OBF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF765WOM tagAlign tagAlign alignments hg19 ENCSR590YGY Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172630/ 299068182 Anshul Kundaje, Stanford 48bbeeb28358d15d86af1131180dcb54 https://www.encodeproject.org/files/ENCFF765WOM/@@download/ENCFF765WOM.tagAlign.gz archived s3://encode-public/2016/03/30/835bd4f7-8055-4a2a-8031-e368c243cdee/ENCFF765WOM.tagAlign.gz Lab custom hg19 archived ENCFF049AXD tagAlign tagAlign alignments hg19 ENCSR590YGY Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172630/ 204619189 Anshul Kundaje, Stanford ed775deddca04cca9bfa91305a6a4d82 https://www.encodeproject.org/files/ENCFF049AXD/@@download/ENCFF049AXD.tagAlign.gz archived s3://encode-public/2016/02/11/74e9d664-5675-49e5-9cdb-62b82aabea0d/ENCFF049AXD.tagAlign.gz Lab custom hg19 archived ENCFF969PTL bam bam redacted unfiltered alignments GRCh38 ENCSR590YGY Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF507DNV/, /files/ENCFF643CGH/ 715390105 ENCODE Processing Pipeline f4c63f9509e8c674e52e0bb1d3fae2a2 https://www.encodeproject.org/files/ENCFF969PTL/@@download/ENCFF969PTL.bam released s3://encode-public/2017/11/09/7f9b6e04-cc59-47a2-b88f-4a312b0413b9/ENCFF969PTL.bam ENCODE3 GRCh38 archived ENCFF796RSP bam bam redacted alignments GRCh38 ENCSR590YGY Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF507DNV/, /files/ENCFF643CGH/ 558354352 ENCODE Processing Pipeline 16b4c47ce2fadcb9baa881f0ea44bb00 https://www.encodeproject.org/files/ENCFF796RSP/@@download/ENCFF796RSP.bam released s3://encode-public/2017/11/09/bf0ff319-594e-4bae-9fe4-58a326f8e611/ENCFF796RSP.bam ENCODE3 GRCh38 archived ENCFF864VUU bam bam redacted unfiltered alignments hg19 ENCSR590YGY Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF507DNV/, /files/ENCFF807MUK/ 702723954 ENCODE Processing Pipeline 890d2b6c1bb2ee0c9ec504cc8233ed88 https://www.encodeproject.org/files/ENCFF864VUU/@@download/ENCFF864VUU.bam released s3://encode-public/2018/01/20/cd14b2e0-7492-4cb1-ace5-69c55a885499/ENCFF864VUU.bam ENCODE3 hg19 archived ENCFF489YIL bam bam redacted alignments hg19 ENCSR590YGY Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF507DNV/, /files/ENCFF807MUK/ 557521491 ENCODE Processing Pipeline 1f78df22c56148e9d74d55e65919b933 https://www.encodeproject.org/files/ENCFF489YIL/@@download/ENCFF489YIL.bam released s3://encode-public/2018/01/20/85312c4a-22b6-4856-914c-d82933cd63fa/ENCFF489YIL.bam ENCODE3 hg19 archived ENCFF544XTF bam bam redacted alignments GRCh38 ENCSR590YGY Control ChIP-seq /human-donors/ENCDO686OPO/ CL:1001608 foreskin fibroblast primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF136KWW/, /files/ENCFF110MCL/ 3291616693 ENCODE Processing Pipeline 12753ebd8ddfba77fa4eb1a5ca75df3c https://www.encodeproject.org/files/ENCFF544XTF/@@download/ENCFF544XTF.bam released s3://encode-public/2021/01/28/264e7ec5-0882-4743-b348-b41ced48e25f/ENCFF544XTF.bam ENCODE4 v1.7.0 GRCh38 released ENCFF786PDR fastq fastq reads ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 50 single-ended 2004523118 Kevin White, UChicago 817768098dbd19bcd1b95de293c8a7b9 https://www.encodeproject.org/files/ENCFF786PDR/@@download/ENCFF786PDR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/533619a6-cecc-4f36-b646-6124a2d45be7/ENCFF786PDR.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF586INF fastq fastq reads ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1131892663 Kevin White, UChicago 2fac6be07022d7d01474e88c6ab03fc6 https://www.encodeproject.org/files/ENCFF586INF/@@download/ENCFF586INF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/a784333c-77a0-484a-a2c9-f2092f421993/ENCFF586INF.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF189XUH bam bam alignments ce10 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586INF/, /files/ENCFF987UMF/ 1484519425 Kevin White, UChicago 64cba238bb95717e946f7962a5edbbc2 https://www.encodeproject.org/files/ENCFF189XUH/@@download/ENCFF189XUH.bam released s3://encode-public/2016/10/07/5d1b7a1c-0f37-4188-a574-a05cdef619a9/ENCFF189XUH.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF428QJX bam bam alignments ce10 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 50 /files/ENCFF786PDR/, /files/ENCFF987UMF/ 2699001364 Kevin White, UChicago 045d3300587f260b85062f7fce42a940 https://www.encodeproject.org/files/ENCFF428QJX/@@download/ENCFF428QJX.bam released s3://encode-public/2016/10/07/79b36031-50ce-4fa9-9125-cb1bec4be729/ENCFF428QJX.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF993CUU bam bam alignments ce11 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF586INF/, /files/ENCFF586MOL/ 1485680177 Kevin White, UChicago b3113eab549ab1d2e911151f41d9196a https://www.encodeproject.org/files/ENCFF993CUU/@@download/ENCFF993CUU.bam released s3://encode-public/2016/10/07/9679f0fd-38ae-498f-b3da-24922794bf25/ENCFF993CUU.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF477XGB bam bam alignments ce11 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 2 2_1 50 /files/ENCFF786PDR/, /files/ENCFF586MOL/ 2701190110 Kevin White, UChicago 83e7e3723cbea41919489e33922a5560 https://www.encodeproject.org/files/ENCFF477XGB/@@download/ENCFF477XGB.bam released s3://encode-public/2016/10/07/5697b752-6873-4868-891b-a3094ae32e3c/ENCFF477XGB.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF959QJK bigWig bigWig read-depth normalized signal ce10 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF189XUH/, /files/ENCFF428QJX/ 9969686 Kevin White, UChicago 804448c6d7d170aef0ffd8a1683c7e80 https://www.encodeproject.org/files/ENCFF959QJK/@@download/ENCFF959QJK.bigWig released s3://encode-public/2016/10/07/dffc8191-a5d1-4598-8cf8-04eef351f40f/ENCFF959QJK.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF673HVG bigWig bigWig signal of unique reads ce10 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF189XUH/, /files/ENCFF428QJX/ 9947748 Kevin White, UChicago 405549083d2d52c30e253f292449d427 https://www.encodeproject.org/files/ENCFF673HVG/@@download/ENCFF673HVG.bigWig released s3://encode-public/2016/10/07/424cea28-9447-4989-aba4-9f8f306ad4e9/ENCFF673HVG.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF763LRK bigWig bigWig read-depth normalized signal ce11 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF993CUU/, /files/ENCFF477XGB/ 9969681 Kevin White, UChicago dff963e0223449b9f4e996f9af8e2b3e https://www.encodeproject.org/files/ENCFF763LRK/@@download/ENCFF763LRK.bigWig released s3://encode-public/2016/10/07/b200e3cb-66b3-4ea7-84ca-a42e483454a0/ENCFF763LRK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF894LJQ bigWig bigWig signal of unique reads ce11 ENCSR911LPA Control ChIP-seq /worm-donors/ENCDO763DES/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172168/'], '@type': ['Target', 'Item'], 'name': 'B0261.1-celegans', 'label': 'B0261.1', '@id': '/targets/B0261.1-celegans/', 'title': 'B0261.1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor'], 'uuid': '9ba827f0-5fa9-41e0-9bbf-b39515997196', 'status': 'released'} ce11 I 5235327 5271032 DNA 2016-10-27 modERN sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF993CUU/, /files/ENCFF477XGB/ 9947746 Kevin White, UChicago 796c2c108a969b9778e8abd9f9c3f4b1 https://www.encodeproject.org/files/ENCFF894LJQ/@@download/ENCFF894LJQ.bigWig released s3://encode-public/2016/10/07/02e85766-cca3-4841-bdec-65e15d4d2964/ENCFF894LJQ.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF352JIF fastq fastq reads ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 single-ended 1813106058 Bradley Bernstein, Broad 4e21a17ed40dd2832e1bf5c9614a1b5f SRA:SRR5832709 https://www.encodeproject.org/files/ENCFF352JIF/@@download/ENCFF352JIF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/aed91778-7ee1-4df2-8b97-294814b994a0/ENCFF352JIF.fastq.gz ENCFF476AQS fastq fastq reads ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 single-ended 1870688748 Bradley Bernstein, Broad 6b74c8a264e39c35396bbe8735979fe0 SRA:SRR5832710 https://www.encodeproject.org/files/ENCFF476AQS/@@download/ENCFF476AQS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/24/46ad85b5-590b-4c24-a790-2e30458740f8/ENCFF476AQS.fastq.gz ENCFF460YQD bam bam unfiltered alignments GRCh38 ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 /files/ENCFF352JIF/, /files/ENCFF476AQS/, /files/ENCFF643CGH/ 3484877161 ENCODE Processing Pipeline 627eca58a4b8c799d5841442aecb8256 https://www.encodeproject.org/files/ENCFF460YQD/@@download/ENCFF460YQD.bam released s3://encode-public/2017/01/26/d1598ff4-9e17-497b-879f-315e0184c7de/ENCFF460YQD.bam ENCODE3 GRCh38 archived ENCFF739LDB bam bam unfiltered alignments hg19 ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF352JIF/, /files/ENCFF476AQS/ 3475501013 ENCODE Processing Pipeline 3e2878ebcfa43da8af0058b46062574a https://www.encodeproject.org/files/ENCFF739LDB/@@download/ENCFF739LDB.bam released s3://encode-public/2017/01/26/2fe4b136-312e-4894-902c-784347f34a09/ENCFF739LDB.bam ENCODE3 hg19 archived ENCFF616VMF bam bam alignments hg19 ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF352JIF/, /files/ENCFF476AQS/ 2957508571 ENCODE Processing Pipeline 4d9e60bf917e071cbfddf3fc3a47ce54 https://www.encodeproject.org/files/ENCFF616VMF/@@download/ENCFF616VMF.bam released s3://encode-public/2017/01/26/7e64789a-ccd5-4a01-be63-09475a932c39/ENCFF616VMF.bam ENCODE3 hg19 archived ENCFF925HTZ bam bam alignments GRCh38 ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 /files/ENCFF352JIF/, /files/ENCFF476AQS/, /files/ENCFF643CGH/ 2961170223 ENCODE Processing Pipeline 22e69336a497ccf891d23fbea3bc6324 https://www.encodeproject.org/files/ENCFF925HTZ/@@download/ENCFF925HTZ.bam released s3://encode-public/2017/01/26/b3e517b0-967f-4048-88f0-29a70a117eb5/ENCFF925HTZ.bam ENCODE3 GRCh38 archived ENCFF496QBK bam bam alignments GRCh38 ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 /files/ENCFF476AQS/, /files/ENCFF110MCL/, /files/ENCFF352JIF/ 3022181132 ENCODE Processing Pipeline ec3bc9959df8abb26343e8f0dde4dff9 https://www.encodeproject.org/files/ENCFF496QBK/@@download/ENCFF496QBK.bam released s3://encode-public/2020/08/20/f48b3f86-bdcb-4ed8-b517-80d9fd14f129/ENCFF496QBK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF627PTK bam bam unfiltered alignments GRCh38 ENCSR154SJE Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001323 tibial nerve tissue Homo sapiens DNA 2017-01-27 ENCODE 200-600 1 1_1 76 /files/ENCFF476AQS/, /files/ENCFF110MCL/, /files/ENCFF352JIF/ 3519282906 ENCODE Processing Pipeline d77913a0c68214c489d876ecbcd76f6a https://www.encodeproject.org/files/ENCFF627PTK/@@download/ENCFF627PTK.bam released s3://encode-public/2020/08/20/7eebfe4e-beac-46aa-8403-c651063d0d45/ENCFF627PTK.bam ENCODE4 v1.5.1 GRCh38 released ENCFF667MAD fastq fastq reads ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF794FIO/ 1719210726 Richard Myers, HAIB 434993f2753d8a0fe3573d900e546dec SRA:SRR6213245 https://www.encodeproject.org/files/ENCFF667MAD/@@download/ENCFF667MAD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/b240fe73-8db7-4473-9c02-364bdcbea36f/ENCFF667MAD.fastq.gz ENCFF794FIO fastq fastq reads ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF667MAD/ 1680450149 Richard Myers, HAIB b68115626ddd9c71c53e3744eb3fbbe9 SRA:SRR6213245 https://www.encodeproject.org/files/ENCFF794FIO/@@download/ENCFF794FIO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/901e817c-13a2-4f3b-92ad-fe3d289e12d7/ENCFF794FIO.fastq.gz ENCFF665VYT bam bam unfiltered alignments GRCh38 ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF794FIO/, /files/ENCFF643CGH/, /files/ENCFF667MAD/ 4112343689 ENCODE Processing Pipeline 9d3388456cb4f79c433a657ce271a41c https://www.encodeproject.org/files/ENCFF665VYT/@@download/ENCFF665VYT.bam released s3://encode-public/2017/02/02/03c0ffe1-6557-4d24-9420-1a828ee692ea/ENCFF665VYT.bam ENCODE3 GRCh38 archived ENCFF652WNG bam bam unfiltered alignments hg19 ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF794FIO/, /files/ENCFF807MUK/, /files/ENCFF667MAD/ 4095307112 ENCODE Processing Pipeline 569e71616981e39ba5e341f866f87823 https://www.encodeproject.org/files/ENCFF652WNG/@@download/ENCFF652WNG.bam released s3://encode-public/2017/02/02/5e162408-1042-4e69-9347-756d3c9134cd/ENCFF652WNG.bam ENCODE3 hg19 archived ENCFF955AEQ bam bam alignments GRCh38 ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF794FIO/, /files/ENCFF643CGH/, /files/ENCFF667MAD/ 2778978902 ENCODE Processing Pipeline 91e051fff2445e94275f6a7f95697abe https://www.encodeproject.org/files/ENCFF955AEQ/@@download/ENCFF955AEQ.bam released s3://encode-public/2017/02/02/7da6708d-f323-4d99-9596-785b58df5336/ENCFF955AEQ.bam ENCODE3 GRCh38 archived ENCFF328TRH bam bam alignments hg19 ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF794FIO/, /files/ENCFF807MUK/, /files/ENCFF667MAD/ 2774575372 ENCODE Processing Pipeline fcf9f938de4d066326df1b9f24adb9f6 https://www.encodeproject.org/files/ENCFF328TRH/@@download/ENCFF328TRH.bam released s3://encode-public/2017/02/02/752968a4-644f-4968-a958-aa60eaafae14/ENCFF328TRH.bam ENCODE3 hg19 archived ENCFF111TSN bam bam unfiltered alignments GRCh38 ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF794FIO/, /files/ENCFF667MAD/ 4171955081 ENCODE Processing Pipeline 5ee749e6284274852db0e630c8d81115 https://www.encodeproject.org/files/ENCFF111TSN/@@download/ENCFF111TSN.bam released s3://encode-public/2020/06/06/182553c7-f597-4e09-a627-1904625d78f3/ENCFF111TSN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF364AND bam bam alignments GRCh38 ENCSR336ZYT Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF794FIO/, /files/ENCFF667MAD/ 2601700746 ENCODE Processing Pipeline 36887c418181faac8451643ae9b68ed4 https://www.encodeproject.org/files/ENCFF364AND/@@download/ENCFF364AND.bam released s3://encode-public/2020/06/06/79dad4e5-dc29-46ce-8ae1-d85374e3702e/ENCFF364AND.bam ENCODE4 v1.4.0 GRCh38 released ENCFF408CYN bigWig bigWig read-depth normalized signal dm6 ENCSR857ANW Control ChIP-seq /fly-donors/ENCDO647ZXV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32557/'], '@type': ['Target', 'Item'], 'name': 'CG8924-dmelanogaster', 'label': 'CG8924', '@id': '/targets/CG8924-dmelanogaster/', 'title': 'CG8924 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84d5f252-3c4c-4ea5-9b26-1731582ea869', 'status': 'released'} dm3 X 15828662 15847921 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF148KZF/ 17815476 Kevin White, UChicago 681c6686226e32c536253758096a600d https://www.encodeproject.org/files/ENCFF408CYN/@@download/ENCFF408CYN.bigWig released s3://encode-public/2019/06/18/3cf90223-5344-4369-9f44-1b60f3ef7ed1/ENCFF408CYN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF884FJN fastq fastq reads ENCSR857ANW Control ChIP-seq /fly-donors/ENCDO647ZXV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32557/'], '@type': ['Target', 'Item'], 'name': 'CG8924-dmelanogaster', 'label': 'CG8924', '@id': '/targets/CG8924-dmelanogaster/', 'title': 'CG8924 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84d5f252-3c4c-4ea5-9b26-1731582ea869', 'status': 'released'} dm3 X 15828662 15847921 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1130664432 Kevin White, UChicago ccea48b776a14e05c4afb5013609ed80 https://www.encodeproject.org/files/ENCFF884FJN/@@download/ENCFF884FJN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/6eab2ff4-2287-42b7-915f-c2f1c944d28f/ENCFF884FJN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF148KZF bam bam alignments dm6 ENCSR857ANW Control ChIP-seq /fly-donors/ENCDO647ZXV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32557/'], '@type': ['Target', 'Item'], 'name': 'CG8924-dmelanogaster', 'label': 'CG8924', '@id': '/targets/CG8924-dmelanogaster/', 'title': 'CG8924 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84d5f252-3c4c-4ea5-9b26-1731582ea869', 'status': 'released'} dm3 X 15828662 15847921 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF884FJN/, /files/ENCFF479RCH/ 1497172995 Kevin White, UChicago fc608b020ff2154e87ed44898fe52d61 https://www.encodeproject.org/files/ENCFF148KZF/@@download/ENCFF148KZF.bam released s3://encode-public/2019/06/18/2d913e04-cf88-404c-8d09-2a0d994c401e/ENCFF148KZF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF756EKR bigWig bigWig signal of unique reads dm6 ENCSR857ANW Control ChIP-seq /fly-donors/ENCDO647ZXV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/32557/'], '@type': ['Target', 'Item'], 'name': 'CG8924-dmelanogaster', 'label': 'CG8924', '@id': '/targets/CG8924-dmelanogaster/', 'title': 'CG8924 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '84d5f252-3c4c-4ea5-9b26-1731582ea869', 'status': 'released'} dm3 X 15828662 15847921 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF148KZF/ 17810343 Kevin White, UChicago 6c6df72e72857a806da04ffa8d1c24c4 https://www.encodeproject.org/files/ENCFF756EKR/@@download/ENCFF756EKR.bigWig released s3://encode-public/2019/06/18/b86f803e-b7b5-461a-905c-32ca37394c71/ENCFF756EKR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF425MCR fastq fastq reads ENCSR592WZZ Control ChIP-seq /fly-donors/ENCDO069HVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36064/'], '@type': ['Target', 'Item'], 'name': 'gem-dmelanogaster', 'label': 'gem', '@id': '/targets/gem-dmelanogaster/', 'title': 'gem (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bd88b33a-91e6-4c86-8290-61faa20ed4cd', 'status': 'released'} dm3 2R 5984846 6043679 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 581874197 Kevin White, UChicago 6bb1a6aefdaae73a95c4174e66436e3f https://www.encodeproject.org/files/ENCFF425MCR/@@download/ENCFF425MCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/41470f1d-033b-4acb-90c5-28cf79c199fc/ENCFF425MCR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF843YJB bam bam alignments dm6 ENCSR592WZZ Control ChIP-seq /fly-donors/ENCDO069HVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36064/'], '@type': ['Target', 'Item'], 'name': 'gem-dmelanogaster', 'label': 'gem', '@id': '/targets/gem-dmelanogaster/', 'title': 'gem (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bd88b33a-91e6-4c86-8290-61faa20ed4cd', 'status': 'released'} dm3 2R 5984846 6043679 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF425MCR/, /files/ENCFF479RCH/ 767064357 Kevin White, UChicago b95110455a0b2ab8b35d09571dfdcc02 https://www.encodeproject.org/files/ENCFF843YJB/@@download/ENCFF843YJB.bam released s3://encode-public/2019/04/13/f4104a3f-fead-4ae5-bf0d-6927bc7f374b/ENCFF843YJB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF593BRG bigWig bigWig signal of unique reads dm6 ENCSR592WZZ Control ChIP-seq /fly-donors/ENCDO069HVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36064/'], '@type': ['Target', 'Item'], 'name': 'gem-dmelanogaster', 'label': 'gem', '@id': '/targets/gem-dmelanogaster/', 'title': 'gem (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bd88b33a-91e6-4c86-8290-61faa20ed4cd', 'status': 'released'} dm3 2R 5984846 6043679 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF843YJB/ 17610138 Kevin White, UChicago 70d6618abfab331cf95c8dfd3a39d4bf https://www.encodeproject.org/files/ENCFF593BRG/@@download/ENCFF593BRG.bigWig released s3://encode-public/2019/04/16/f504c248-da6c-410f-8e7b-202d749dda15/ENCFF593BRG.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF542LMI bigWig bigWig read-depth normalized signal dm6 ENCSR592WZZ Control ChIP-seq /fly-donors/ENCDO069HVT/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36064/'], '@type': ['Target', 'Item'], 'name': 'gem-dmelanogaster', 'label': 'gem', '@id': '/targets/gem-dmelanogaster/', 'title': 'gem (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'bd88b33a-91e6-4c86-8290-61faa20ed4cd', 'status': 'released'} dm3 2R 5984846 6043679 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF843YJB/ 17625816 Kevin White, UChicago c82dec9bff18d0dd642ebed2235a3967 https://www.encodeproject.org/files/ENCFF542LMI/@@download/ENCFF542LMI.bigWig released s3://encode-public/2019/04/16/a641eda2-515a-4a38-8fea-0b4fff671526/ENCFF542LMI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF654CCW bam bam alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF387OBH/, /files/ENCFF624TJJ/, /files/ENCFF198WTB/, /files/ENCFF127IDN/, /files/ENCFF110MCL/ 5164855884 ENCODE Processing Pipeline 5065fe00a45a3e7212c89cef624e2887 https://www.encodeproject.org/files/ENCFF654CCW/@@download/ENCFF654CCW.bam released s3://encode-public/2020/09/19/636f52c4-f32b-4b06-8372-ee30bb8add85/ENCFF654CCW.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF573LDS bam bam unfiltered alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF937MNM/, /files/ENCFF643CGH/, /files/ENCFF009LTY/, /files/ENCFF856BVX/, /files/ENCFF511GZH/, /files/ENCFF183QCN/, /files/ENCFF129QRN/, /files/ENCFF522KUQ/, /files/ENCFF275SJH/ 2921167049 ENCODE Processing Pipeline 605f8900d290d6a82f8f6931dd34035a https://www.encodeproject.org/files/ENCFF573LDS/@@download/ENCFF573LDS.bam released s3://encode-public/2019/08/29/cd3efe36-77e8-404a-9c1d-853fe46eb431/ENCFF573LDS.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF094YPY bam bam unfiltered alignments hg19 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF937MNM/, /files/ENCFF009LTY/, /files/ENCFF856BVX/, /files/ENCFF807MUK/, /files/ENCFF511GZH/, /files/ENCFF183QCN/, /files/ENCFF129QRN/, /files/ENCFF522KUQ/, /files/ENCFF275SJH/ 2911392108 ENCODE Processing Pipeline b7f95d2c91c2b11b01f7fcbea678143c https://www.encodeproject.org/files/ENCFF094YPY/@@download/ENCFF094YPY.bam released s3://encode-public/2019/08/29/d1a45f72-f602-45f2-b0d1-7546de5d12d3/ENCFF094YPY.bam ENCODE3 hg19 archived inconsistent platforms ENCFF889DTL bam bam unfiltered alignments hg19 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF127IDN/, /files/ENCFF807MUK/, /files/ENCFF624TJJ/, /files/ENCFF198WTB/, /files/ENCFF387OBH/ 6196688969 ENCODE Processing Pipeline fa23b6e4e94e9c47f0c55842e77b68b6 https://www.encodeproject.org/files/ENCFF889DTL/@@download/ENCFF889DTL.bam released s3://encode-public/2019/08/29/75728c75-f21d-4ccb-a1c8-ab02398d6188/ENCFF889DTL.bam ENCODE3 hg19 archived inconsistent platforms ENCFF880ZUZ bam bam unfiltered alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF127IDN/, /files/ENCFF643CGH/, /files/ENCFF624TJJ/, /files/ENCFF198WTB/, /files/ENCFF387OBH/ 6209358772 ENCODE Processing Pipeline 1ac252d4b8c4f47a976bea6183eb34da https://www.encodeproject.org/files/ENCFF880ZUZ/@@download/ENCFF880ZUZ.bam released s3://encode-public/2019/08/29/3c10ea6c-f024-4a11-894d-7f8b3199676b/ENCFF880ZUZ.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF634VER bam bam alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF937MNM/, /files/ENCFF643CGH/, /files/ENCFF009LTY/, /files/ENCFF856BVX/, /files/ENCFF511GZH/, /files/ENCFF183QCN/, /files/ENCFF129QRN/, /files/ENCFF522KUQ/, /files/ENCFF275SJH/ 2287379384 ENCODE Processing Pipeline 92c74552019f315ca0f97b23ae331548 https://www.encodeproject.org/files/ENCFF634VER/@@download/ENCFF634VER.bam released s3://encode-public/2019/08/29/da3fcdfd-c06b-42b6-bc09-aba8147c17be/ENCFF634VER.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF876MAH bam bam alignments hg19 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF937MNM/, /files/ENCFF009LTY/, /files/ENCFF856BVX/, /files/ENCFF807MUK/, /files/ENCFF511GZH/, /files/ENCFF183QCN/, /files/ENCFF129QRN/, /files/ENCFF522KUQ/, /files/ENCFF275SJH/ 2284520860 ENCODE Processing Pipeline c80dd1fff5cbba5b57bc2f1652dd493a https://www.encodeproject.org/files/ENCFF876MAH/@@download/ENCFF876MAH.bam released s3://encode-public/2019/08/29/e4804128-06af-4b95-8347-fbceeac73848/ENCFF876MAH.bam ENCODE3 hg19 archived inconsistent platforms ENCFF781THS bam bam alignments hg19 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF127IDN/, /files/ENCFF807MUK/, /files/ENCFF624TJJ/, /files/ENCFF198WTB/, /files/ENCFF387OBH/ 5100488734 ENCODE Processing Pipeline 11431a19015be0e130bed87e93016e8f https://www.encodeproject.org/files/ENCFF781THS/@@download/ENCFF781THS.bam released s3://encode-public/2019/08/29/774f2ffb-7d55-44b3-b4d9-57d0bfa1e40b/ENCFF781THS.bam ENCODE3 hg19 archived inconsistent platforms ENCFF054XXR bam bam alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF127IDN/, /files/ENCFF643CGH/, /files/ENCFF624TJJ/, /files/ENCFF198WTB/, /files/ENCFF387OBH/ 5109745714 ENCODE Processing Pipeline 27872dab2945ab6a366bacf5a334cb1e https://www.encodeproject.org/files/ENCFF054XXR/@@download/ENCFF054XXR.bam released s3://encode-public/2019/08/29/9766c2be-571c-4c42-9d06-817ec515ac1e/ENCFF054XXR.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF129QRN fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 370092406 Bradley Bernstein, Broad e09928db40df290384eecab585143f7d SRA:SRR10837931 https://www.encodeproject.org/files/ENCFF129QRN/@@download/ENCFF129QRN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/298db96e-6a65-48c1-88cf-821c130a5e61/ENCFF129QRN.fastq.gz inconsistent platforms ENCFF856BVX fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 383300667 Bradley Bernstein, Broad cacd0b2aeca7f661a7b07a2675d80cc2 SRA:SRR10837932 https://www.encodeproject.org/files/ENCFF856BVX/@@download/ENCFF856BVX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/d51c7fe4-9e1f-4906-a97f-56cb5fe5c11e/ENCFF856BVX.fastq.gz inconsistent platforms ENCFF522KUQ fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 384099495 Bradley Bernstein, Broad 81b84161a6db60582dbc23d05c32b73d SRA:SRR10837933 https://www.encodeproject.org/files/ENCFF522KUQ/@@download/ENCFF522KUQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/c7022479-cab3-40cb-9dea-3b994ce6d5ac/ENCFF522KUQ.fastq.gz inconsistent platforms ENCFF009LTY fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1 76 single-ended 389594187 Bradley Bernstein, Broad 64c5edbb16dd128c8af957f037856c1e SRA:SRR10837934 https://www.encodeproject.org/files/ENCFF009LTY/@@download/ENCFF009LTY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/3d53d968-04b4-4490-81bc-986d13fd2d5e/ENCFF009LTY.fastq.gz inconsistent platforms ENCFF937MNM fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 346139254 Bradley Bernstein, Broad 4301f578d247d21644b8fd3f908532d7 SRA:SRR10837927 https://www.encodeproject.org/files/ENCFF937MNM/@@download/ENCFF937MNM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/f42e5737-5cf2-48ba-89a6-d3bc869ece85/ENCFF937MNM.fastq.gz inconsistent platforms ENCFF275SJH fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 355087009 Bradley Bernstein, Broad 67832230c8ef4e5d9f866bf749e34511 SRA:SRR10837928 https://www.encodeproject.org/files/ENCFF275SJH/@@download/ENCFF275SJH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/8613d4c6-cdee-4a14-aa77-a7e7a1936a3d/ENCFF275SJH.fastq.gz inconsistent platforms ENCFF183QCN fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 346105308 Bradley Bernstein, Broad e2b74e44fa0c56a918ad03c13facb102 SRA:SRR10837929 https://www.encodeproject.org/files/ENCFF183QCN/@@download/ENCFF183QCN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/44609377-df05-4e58-8fbd-a3d6b64d77db/ENCFF183QCN.fastq.gz inconsistent platforms ENCFF511GZH fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_2 76 single-ended 345951237 Bradley Bernstein, Broad d3bdccfcb09aab566edfd195a25e0038 SRA:SRR10837930 https://www.encodeproject.org/files/ENCFF511GZH/@@download/ENCFF511GZH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/ede3f191-d3a0-4b93-8cd7-49c849ed7f7f/ENCFF511GZH.fastq.gz inconsistent platforms ENCFF198WTB fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_2 76 single-ended 1565935369 Bradley Bernstein, Broad 69f9c68415a10bca486204d626307168 SRA:SRR10837925 https://www.encodeproject.org/files/ENCFF198WTB/@@download/ENCFF198WTB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/21b6084a-793b-4f84-8912-a55ddaaf39f4/ENCFF198WTB.fastq.gz inconsistent platforms ENCFF624TJJ fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_2 76 single-ended 1597193881 Bradley Bernstein, Broad 94f6a3d4c6c5cdafdccf662d8e505ba6 SRA:SRR10837926 https://www.encodeproject.org/files/ENCFF624TJJ/@@download/ENCFF624TJJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/07/29/556e2d60-2ad2-4b65-99ec-491f2d99acb1/ENCFF624TJJ.fastq.gz inconsistent platforms ENCFF387OBH fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1817382527 Bradley Bernstein, Broad 5f9c0308c71f17bb49523c0beb920658 SRA:SRR10837935 https://www.encodeproject.org/files/ENCFF387OBH/@@download/ENCFF387OBH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/1482d897-4a84-47e3-9e17-1707c218f817/ENCFF387OBH.fastq.gz inconsistent platforms ENCFF127IDN fastq fastq reads ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1846615840 Bradley Bernstein, Broad a5ec8d9d68167bf9e40e4ddc455eee76 SRA:SRR10837936 https://www.encodeproject.org/files/ENCFF127IDN/@@download/ENCFF127IDN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/9a5aee04-ffe7-4993-9172-7b72b55b5016/ENCFF127IDN.fastq.gz inconsistent platforms ENCFF056ODQ bam bam unfiltered alignments hg19 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF127IDN/, /files/ENCFF807MUK/, /files/ENCFF387OBH/ 3366281155 ENCODE Processing Pipeline f8ac90ef2b7a4b47e1b09cd7f1a49d3a https://www.encodeproject.org/files/ENCFF056ODQ/@@download/ENCFF056ODQ.bam archived s3://encode-public/2017/08/04/aef3a9f0-5438-4d9e-88ff-c7bf6724a94d/ENCFF056ODQ.bam ENCODE3 hg19 archived inconsistent platforms ENCFF937EBV bam bam alignments hg19 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF127IDN/, /files/ENCFF807MUK/, /files/ENCFF387OBH/ 2727279701 ENCODE Processing Pipeline b7b6e918b406ba5f45c84465f09db38b https://www.encodeproject.org/files/ENCFF937EBV/@@download/ENCFF937EBV.bam archived s3://encode-public/2017/08/04/5bf2f94d-5bdb-4612-833e-c1f76d57fc3c/ENCFF937EBV.bam ENCODE3 hg19 archived inconsistent platforms ENCFF022YQT bam bam unfiltered alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF127IDN/, /files/ENCFF643CGH/, /files/ENCFF387OBH/ 3372807422 ENCODE Processing Pipeline aa20c51ed1dac29c49811e589258d1d8 https://www.encodeproject.org/files/ENCFF022YQT/@@download/ENCFF022YQT.bam archived s3://encode-public/2017/08/04/d5a1a7a2-f6d5-4fb6-a67d-119def826a99/ENCFF022YQT.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF742DCE bam bam alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 /files/ENCFF127IDN/, /files/ENCFF643CGH/, /files/ENCFF387OBH/ 2733075873 ENCODE Processing Pipeline de32731918e5564923d564bba0994646 https://www.encodeproject.org/files/ENCFF742DCE/@@download/ENCFF742DCE.bam archived s3://encode-public/2017/08/04/9a1a5682-37b7-4d3a-b84a-fbf679763f03/ENCFF742DCE.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF917DUY bam bam unfiltered alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF387OBH/, /files/ENCFF624TJJ/, /files/ENCFF198WTB/, /files/ENCFF127IDN/, /files/ENCFF110MCL/ 6203178209 ENCODE Processing Pipeline 41e1cccd7daf789c6aca5941e1e25710 https://www.encodeproject.org/files/ENCFF917DUY/@@download/ENCFF917DUY.bam released s3://encode-public/2020/09/19/99bddfa6-f322-4a3f-92bd-bd0458aac856/ENCFF917DUY.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF118WRL bam bam unfiltered alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF937MNM/, /files/ENCFF275SJH/, /files/ENCFF009LTY/, /files/ENCFF522KUQ/, /files/ENCFF129QRN/, /files/ENCFF511GZH/, /files/ENCFF856BVX/, /files/ENCFF110MCL/, /files/ENCFF183QCN/ 2897272733 ENCODE Processing Pipeline e6d365e152a507d06997f29a487525a0 https://www.encodeproject.org/files/ENCFF118WRL/@@download/ENCFF118WRL.bam released s3://encode-public/2020/09/19/23626843-2ea4-456e-8ec0-60c8b3bb2e4b/ENCFF118WRL.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF658CNF bam bam alignments GRCh38 ENCSR479HSY Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0001157 transverse colon tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF937MNM/, /files/ENCFF275SJH/, /files/ENCFF009LTY/, /files/ENCFF522KUQ/, /files/ENCFF129QRN/, /files/ENCFF511GZH/, /files/ENCFF856BVX/, /files/ENCFF110MCL/, /files/ENCFF183QCN/ 2271938045 ENCODE Processing Pipeline 18bc6457a6f080d5cb166513704ffff5 https://www.encodeproject.org/files/ENCFF658CNF/@@download/ENCFF658CNF.bam released s3://encode-public/2020/09/19/62c1812b-3d54-4dda-b3be-37e1e2f405c8/ENCFF658CNF.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF032FEH fastq fastq reads ENCSR741UCB Control ChIP-seq /fly-donors/ENCDO468XCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36571/'], '@type': ['Target', 'Item'], 'name': 'cg-dmelanogaster', 'label': 'cg', '@id': '/targets/cg-dmelanogaster/', 'title': 'cg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba1e9c60-8e87-4a2b-8815-ea751860be7b', 'status': 'released'} dm3 2R 10054981 10075054 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 475347815 Kevin White, UChicago 4912d470ad930a92c10d1798034576f7 https://www.encodeproject.org/files/ENCFF032FEH/@@download/ENCFF032FEH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/64704804-da45-4d64-a2b9-298fffc04c13/ENCFF032FEH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF717XXU bam bam alignments dm6 ENCSR741UCB Control ChIP-seq /fly-donors/ENCDO468XCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36571/'], '@type': ['Target', 'Item'], 'name': 'cg-dmelanogaster', 'label': 'cg', '@id': '/targets/cg-dmelanogaster/', 'title': 'cg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba1e9c60-8e87-4a2b-8815-ea751860be7b', 'status': 'released'} dm3 2R 10054981 10075054 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF032FEH/, /files/ENCFF479RCH/ 619881436 Kevin White, UChicago 1a40919284f34903c469e9b2f23ef523 https://www.encodeproject.org/files/ENCFF717XXU/@@download/ENCFF717XXU.bam released s3://encode-public/2019/04/13/3c484908-38ab-437e-8a2e-aae983ab161e/ENCFF717XXU.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF661KDV bigWig bigWig signal of unique reads dm6 ENCSR741UCB Control ChIP-seq /fly-donors/ENCDO468XCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36571/'], '@type': ['Target', 'Item'], 'name': 'cg-dmelanogaster', 'label': 'cg', '@id': '/targets/cg-dmelanogaster/', 'title': 'cg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba1e9c60-8e87-4a2b-8815-ea751860be7b', 'status': 'released'} dm3 2R 10054981 10075054 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF717XXU/ 17490119 Kevin White, UChicago acec7f4b779b61a22881bdd6f9dfb9b9 https://www.encodeproject.org/files/ENCFF661KDV/@@download/ENCFF661KDV.bigWig released s3://encode-public/2019/04/16/0469d5d9-2d23-40ff-9290-e246e2ca5ac3/ENCFF661KDV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF224OYJ bigWig bigWig read-depth normalized signal dm6 ENCSR741UCB Control ChIP-seq /fly-donors/ENCDO468XCX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36571/'], '@type': ['Target', 'Item'], 'name': 'cg-dmelanogaster', 'label': 'cg', '@id': '/targets/cg-dmelanogaster/', 'title': 'cg (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba1e9c60-8e87-4a2b-8815-ea751860be7b', 'status': 'released'} dm3 2R 10054981 10075054 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF717XXU/ 17501238 Kevin White, UChicago 2bdf6ea3cd8834ea54b48803cd42e094 https://www.encodeproject.org/files/ENCFF224OYJ/@@download/ENCFF224OYJ.bigWig released s3://encode-public/2019/04/16/076b5777-ec98-4893-90ab-d80b854d6a3c/ENCFF224OYJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF239OPD bigWig bigWig read-depth normalized signal dm6 ENCSR122CCQ Control ChIP-seq /fly-donors/ENCDO489RBH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40940/'], '@type': ['Target', 'Item'], 'name': 'dsx-dmelanogaster', 'label': 'dsx', '@id': '/targets/dsx-dmelanogaster/', 'title': 'dsx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e42764f3-aba0-455c-9508-19d6faaadd0e', 'status': 'released'} dm3 3R 3714494 3805048 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF021XZX/ 17535469 Kevin White, UChicago 41781a6f80fcdc6c9c35f2541798da0e https://www.encodeproject.org/files/ENCFF239OPD/@@download/ENCFF239OPD.bigWig released s3://encode-public/2019/06/18/5ee20614-20c7-4ac2-9688-788684709a36/ENCFF239OPD.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF826GYD fastq fastq reads ENCSR122CCQ Control ChIP-seq /fly-donors/ENCDO489RBH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40940/'], '@type': ['Target', 'Item'], 'name': 'dsx-dmelanogaster', 'label': 'dsx', '@id': '/targets/dsx-dmelanogaster/', 'title': 'dsx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e42764f3-aba0-455c-9508-19d6faaadd0e', 'status': 'released'} dm3 3R 3714494 3805048 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 526362527 Kevin White, UChicago 7dbd01ccb1abfc1fe0bc27d701eb6312 https://www.encodeproject.org/files/ENCFF826GYD/@@download/ENCFF826GYD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/b3c5fd38-21c3-435f-8e9e-02e8a44dce5e/ENCFF826GYD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF021XZX bam bam alignments dm6 ENCSR122CCQ Control ChIP-seq /fly-donors/ENCDO489RBH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40940/'], '@type': ['Target', 'Item'], 'name': 'dsx-dmelanogaster', 'label': 'dsx', '@id': '/targets/dsx-dmelanogaster/', 'title': 'dsx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e42764f3-aba0-455c-9508-19d6faaadd0e', 'status': 'released'} dm3 3R 3714494 3805048 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF826GYD/, /files/ENCFF479RCH/ 691745319 Kevin White, UChicago f9d06b4e7fe7f73bf764b88e40f2ea5b https://www.encodeproject.org/files/ENCFF021XZX/@@download/ENCFF021XZX.bam released s3://encode-public/2019/06/18/7e02a030-a7c1-47c6-b1e4-159c7546c323/ENCFF021XZX.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF317URV bigWig bigWig signal of unique reads dm6 ENCSR122CCQ Control ChIP-seq /fly-donors/ENCDO489RBH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40940/'], '@type': ['Target', 'Item'], 'name': 'dsx-dmelanogaster', 'label': 'dsx', '@id': '/targets/dsx-dmelanogaster/', 'title': 'dsx (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e42764f3-aba0-455c-9508-19d6faaadd0e', 'status': 'released'} dm3 3R 3714494 3805048 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF021XZX/ 17513116 Kevin White, UChicago c0c4bc4bc1b82261dc3929799e28f61d https://www.encodeproject.org/files/ENCFF317URV/@@download/ENCFF317URV.bigWig released s3://encode-public/2019/06/18/25db6f9e-4fb6-4b8e-b037-df79d67377eb/ENCFF317URV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF978SJK bam bam unfiltered alignments hg19 ENCSR381PHD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF434XRU/ 1247649675 ENCODE Processing Pipeline 08ac112b3e0cd0872f9e007bd1a2db83 https://www.encodeproject.org/files/ENCFF978SJK/@@download/ENCFF978SJK.bam released s3://encode-public/2018/02/22/5727e58c-2f19-4305-9ca3-43128ad64f0c/ENCFF978SJK.bam ENCODE3 hg19 archived ENCFF434XRU fastq fastq reads ENCSR381PHD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 single-ended 1102677620 Richard Myers, HAIB 22609a6d52a6d24f97330960f001641a SRA:SRR5338726 https://www.encodeproject.org/files/ENCFF434XRU/@@download/ENCFF434XRU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/12/17/235fa505-b908-497d-b091-ca704594c57d/ENCFF434XRU.fastq.gz ENCFF850ZDJ bam bam alignments hg19 ENCSR381PHD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF434XRU/ 961345657 ENCODE Processing Pipeline d02ffba6e1d88e63334bbeb126fb627d https://www.encodeproject.org/files/ENCFF850ZDJ/@@download/ENCFF850ZDJ.bam released s3://encode-public/2016/01/14/d3c1182b-98b7-4201-b3fa-4ee3c0fcbb79/ENCFF850ZDJ.bam ENCODE3 hg19 archived ENCFF998DHJ bam bam unfiltered alignments GRCh38 ENCSR381PHD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF434XRU/ 1254007822 ENCODE Processing Pipeline 8e1e66dc75088cac2be28997ae5661e2 https://www.encodeproject.org/files/ENCFF998DHJ/@@download/ENCFF998DHJ.bam released s3://encode-public/2016/05/06/3e495ea6-ee6c-4fd2-b8f0-c586dc04c20a/ENCFF998DHJ.bam ENCODE3 GRCh38 archived ENCFF035HOG bam bam alignments GRCh38 ENCSR381PHD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF434XRU/ 961470066 ENCODE Processing Pipeline 1237687bcd239ff5f231543e93364d1f https://www.encodeproject.org/files/ENCFF035HOG/@@download/ENCFF035HOG.bam released s3://encode-public/2016/05/06/cb4055e8-0415-4e80-9550-2e09a1ecc3f1/ENCFF035HOG.bam ENCODE3 GRCh38 archived ENCFF788FGV bam bam unfiltered alignments GRCh38 ENCSR381PHD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF434XRU/ 1233247730 ENCODE Processing Pipeline 6d49b2c1dce61c2c1ec48439514e1c18 https://www.encodeproject.org/files/ENCFF788FGV/@@download/ENCFF788FGV.bam released s3://encode-public/2020/06/06/49562866-21c8-40dd-8e7c-87ece6fdaf20/ENCFF788FGV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF960FFF bam bam alignments GRCh38 ENCSR381PHD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-14 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF434XRU/ 1005801068 ENCODE Processing Pipeline 8fc9c4a1ad6b53084e86bc6613f05c97 https://www.encodeproject.org/files/ENCFF960FFF/@@download/ENCFF960FFF.bam released s3://encode-public/2020/06/06/7590684f-7cff-4b91-90cd-5736286b5342/ENCFF960FFF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF331FON fastq fastq reads ENCSR480YPK Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 998174116 Kevin White, UChicago 4865f6a9a86eeb8a07d7547207ec1b14 https://www.encodeproject.org/files/ENCFF331FON/@@download/ENCFF331FON.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/3a97a9a7-4401-483f-993a-dc344be2cc6a/ENCFF331FON.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF567JDS bam bam alignments dm6 ENCSR480YPK Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF331FON/, /files/ENCFF479RCH/ 1327541966 Kevin White, UChicago c97238109802ba859299949f4edd1eac https://www.encodeproject.org/files/ENCFF567JDS/@@download/ENCFF567JDS.bam released s3://encode-public/2019/04/13/399245d3-0149-41bd-ba74-a5499f38a2cb/ENCFF567JDS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF077TPY bigWig bigWig read-depth normalized signal dm6 ENCSR480YPK Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF567JDS/ 17736343 Kevin White, UChicago 62b9d528178b9cfd8f4fa28ea8e4adda https://www.encodeproject.org/files/ENCFF077TPY/@@download/ENCFF077TPY.bigWig released s3://encode-public/2019/04/16/72405baa-9691-4b87-956c-078b329015c4/ENCFF077TPY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF846FWX bigWig bigWig signal of unique reads dm6 ENCSR480YPK Control ChIP-seq /fly-donors/ENCDO488VQD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42428/'], '@type': ['Target', 'Item'], 'name': 'Stat92E-dmelanogaster', 'label': 'Stat92E', '@id': '/targets/Stat92E-dmelanogaster/', 'title': 'Stat92E (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler', 'transcription factor'], 'uuid': '4a6729cc-84f5-4738-8dd5-8d7081a4a640', 'status': 'released'} DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF567JDS/ 17690647 Kevin White, UChicago 84c73a168b3a4be83b67fbf204d04eef https://www.encodeproject.org/files/ENCFF846FWX/@@download/ENCFF846FWX.bigWig released s3://encode-public/2019/04/16/f2651e6e-00ba-4cc2-92c6-5ed3d36bfbee/ENCFF846FWX.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF510UAH fastq fastq reads ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 single-ended 1271246145 Xiang-Dong Fu, UCSD b1cffb61caf54ab6eebd7b8ffb691f00 SRA:SRR6214039 https://www.encodeproject.org/files/ENCFF510UAH/@@download/ENCFF510UAH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/01/12/56644014-0d3a-488c-80d1-02bc20f921f6/ENCFF510UAH.fastq.gz low read length ENCFF092DDZ fastq fastq reads ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 single-ended 1041941951 Xiang-Dong Fu, UCSD 39f4c7a2f2f3231358d42766a523785f SRA:SRR6214040 https://www.encodeproject.org/files/ENCFF092DDZ/@@download/ENCFF092DDZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/12/862dfaf1-ea23-4aeb-8ccb-2158d30feb22/ENCFF092DDZ.fastq.gz low read length ENCFF711MDL bam bam unfiltered alignments hg19 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF092DDZ/ 1510525590 ENCODE Processing Pipeline b2d08f4340bb6da401ef60b56232bfc5 https://www.encodeproject.org/files/ENCFF711MDL/@@download/ENCFF711MDL.bam released s3://encode-public/2017/02/08/56d5dbf4-c4df-42c7-b847-f3f4c963808d/ENCFF711MDL.bam ENCODE3 hg19 archived low read length ENCFF572OMD bam bam alignments hg19 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF807MUK/, /files/ENCFF092DDZ/ 1136213682 ENCODE Processing Pipeline 3947921f65ebcf699e3c005c9e363e24 https://www.encodeproject.org/files/ENCFF572OMD/@@download/ENCFF572OMD.bam released s3://encode-public/2017/02/08/fce1ae5c-2966-4426-acf7-4c9ab9905de4/ENCFF572OMD.bam ENCODE3 hg19 archived low read length ENCFF522MAY bam bam unfiltered alignments hg19 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF510UAH/ 1831200383 ENCODE Processing Pipeline 8a503bc1d56efe1c8f710499a9c1e0c5 https://www.encodeproject.org/files/ENCFF522MAY/@@download/ENCFF522MAY.bam released s3://encode-public/2017/02/08/6b194c20-c64d-44e5-a1f0-00c4c45a83db/ENCFF522MAY.bam ENCODE3 hg19 archived low read length ENCFF087TOW bam bam unfiltered alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF092DDZ/ 1516624185 ENCODE Processing Pipeline 840d3ea8f516bddb1af77abdb6f9339f https://www.encodeproject.org/files/ENCFF087TOW/@@download/ENCFF087TOW.bam released s3://encode-public/2017/02/08/cde25634-9b9d-4dea-a5d4-a778c9fe5b81/ENCFF087TOW.bam ENCODE3 GRCh38 archived low read length ENCFF100PTE bam bam alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF643CGH/, /files/ENCFF092DDZ/ 1135265460 ENCODE Processing Pipeline c58663c93e79b9e270d42ed95e5416b0 https://www.encodeproject.org/files/ENCFF100PTE/@@download/ENCFF100PTE.bam released s3://encode-public/2017/02/08/a1d418c3-231b-4802-87ae-9cc6f5b5f055/ENCFF100PTE.bam ENCODE3 GRCh38 archived low read length ENCFF508DBG bam bam alignments hg19 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF807MUK/, /files/ENCFF510UAH/ 1354438403 ENCODE Processing Pipeline 88cdbd265ff32506fadc2116d6969040 https://www.encodeproject.org/files/ENCFF508DBG/@@download/ENCFF508DBG.bam released s3://encode-public/2017/02/08/d1c26a46-5bc8-4b24-9916-3ba57ad241c1/ENCFF508DBG.bam ENCODE3 hg19 archived low read length ENCFF721LZU bam bam alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF510UAH/ 1353328650 ENCODE Processing Pipeline cbb84a068ba3c6cb4c70142294b885f1 https://www.encodeproject.org/files/ENCFF721LZU/@@download/ENCFF721LZU.bam released s3://encode-public/2017/02/08/1554afa5-40ed-4dcf-ab86-bde27c1c6498/ENCFF721LZU.bam ENCODE3 GRCh38 archived low read length ENCFF901PZK bam bam unfiltered alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF643CGH/, /files/ENCFF510UAH/ 1838701208 ENCODE Processing Pipeline 17599bd82fdf89eadd7f5b4d0759750c https://www.encodeproject.org/files/ENCFF901PZK/@@download/ENCFF901PZK.bam released s3://encode-public/2017/02/08/21269ea5-61ac-4c6d-bc91-5b26bb6de2d8/ENCFF901PZK.bam ENCODE3 GRCh38 archived low read length ENCFF640UNU bam bam unfiltered alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF510UAH/ 1798465738 ENCODE Processing Pipeline fe511be999a0a441203ba31edb82048f https://www.encodeproject.org/files/ENCFF640UNU/@@download/ENCFF640UNU.bam released s3://encode-public/2020/10/27/e5e420bf-3ba3-4eac-a698-e1970bb31528/ENCFF640UNU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF630ETM bam bam unfiltered alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF092DDZ/ 1484943936 ENCODE Processing Pipeline fc79922b1ac65dfbe75312602d997684 https://www.encodeproject.org/files/ENCFF630ETM/@@download/ENCFF630ETM.bam released s3://encode-public/2020/10/27/afd9e903-965b-47bc-a497-361201d19841/ENCFF630ETM.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF401KXT bam bam alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 2 2_1 40 /files/ENCFF110MCL/, /files/ENCFF092DDZ/ 1185811594 ENCODE Processing Pipeline 597bb709ee5cbe3d843a981f85d118bc https://www.encodeproject.org/files/ENCFF401KXT/@@download/ENCFF401KXT.bam released s3://encode-public/2020/10/27/65da8058-4007-43aa-85d6-d14288cfb771/ENCFF401KXT.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF956EMH bam bam alignments GRCh38 ENCSR932KYH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA SDS formaldehyde 2017-02-13 ENCODE 200-400 1 1_1 40 /files/ENCFF110MCL/, /files/ENCFF510UAH/ 1393691255 ENCODE Processing Pipeline c347d4deb5b753650b2f8b3d5d496da8 https://www.encodeproject.org/files/ENCFF956EMH/@@download/ENCFF956EMH.bam released s3://encode-public/2020/10/27/ebaa6d3b-d88d-4977-96ac-10000671d1e2/ENCFF956EMH.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF102FQP tagAlign tagAlign alignments hg19 ENCSR625BDY Control ChIP-seq /human-donors/ENCDO839WKQ/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172694/ 233437279 Anshul Kundaje, Stanford c853f22badb77d5c4b194a335d808924 https://www.encodeproject.org/files/ENCFF102FQP/@@download/ENCFF102FQP.tagAlign.gz archived s3://encode-public/2016/03/30/ea31900c-9d70-4fc1-aa4c-a619aae49940/ENCFF102FQP.tagAlign.gz Lab custom hg19 archived ENCFF562SKC bam bam redacted unfiltered alignments GRCh38 ENCSR625BDY Control ChIP-seq /human-donors/ENCDO839WKQ/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF687LBW/ 491424268 ENCODE Processing Pipeline 75a8265a276312dd66559eac34354373 https://www.encodeproject.org/files/ENCFF562SKC/@@download/ENCFF562SKC.bam released s3://encode-public/2017/11/09/bad32ec4-0c73-43e0-96a1-4f1d78888b0f/ENCFF562SKC.bam ENCODE3 GRCh38 archived ENCFF572MZP bam bam redacted alignments GRCh38 ENCSR625BDY Control ChIP-seq /human-donors/ENCDO839WKQ/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF687LBW/ 402437391 ENCODE Processing Pipeline 1a64c63391e880aae3e6f84c3b16ebb0 https://www.encodeproject.org/files/ENCFF572MZP/@@download/ENCFF572MZP.bam released s3://encode-public/2017/11/09/0a94582b-1d50-4b29-8175-9194f1f506e1/ENCFF572MZP.bam ENCODE3 GRCh38 archived ENCFF013NRM bam bam redacted unfiltered alignments hg19 ENCSR625BDY Control ChIP-seq /human-donors/ENCDO839WKQ/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF687LBW/ 482786323 ENCODE Processing Pipeline 5815806065a3d324d0e7f5d3d809ec80 https://www.encodeproject.org/files/ENCFF013NRM/@@download/ENCFF013NRM.bam released s3://encode-public/2018/01/20/21c01bb3-3262-4bd0-93c7-b3dbaa67ebdb/ENCFF013NRM.bam ENCODE3 hg19 archived ENCFF289ZBB bam bam redacted alignments hg19 ENCSR625BDY Control ChIP-seq /human-donors/ENCDO839WKQ/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF687LBW/ 401868647 ENCODE Processing Pipeline 280fab44a0a93d9bc719182abb6f378e https://www.encodeproject.org/files/ENCFF289ZBB/@@download/ENCFF289ZBB.bam released s3://encode-public/2018/01/20/2eb4f3b1-2016-4903-9265-2eb78a93c4b6/ENCFF289ZBB.bam ENCODE3 hg19 archived ENCFF812BMY bam bam redacted alignments GRCh38 ENCSR625BDY Control ChIP-seq /human-donors/ENCDO839WKQ/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF849YXO/, /files/ENCFF110MCL/ 2540787707 ENCODE Processing Pipeline 198d5ee225ddbbc0f784d706175430a0 https://www.encodeproject.org/files/ENCFF812BMY/@@download/ENCFF812BMY.bam released s3://encode-public/2021/01/28/d8834b65-81d3-4a01-9a85-411c75b6ffb5/ENCFF812BMY.bam ENCODE4 v1.7.0 GRCh38 released ENCFF545ZEG fastq fastq reads ENCSR215MXM Control ChIP-seq /fly-donors/ENCDO398PZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41056/'], '@type': ['Target', 'Item'], 'name': 'CG8359-dmelanogaster', 'label': 'CG8359', '@id': '/targets/CG8359-dmelanogaster/', 'title': 'CG8359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c159a795-393a-4642-9028-3525fb9494d2', 'status': 'released'} dm3 3R 4623242 4647202 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 477576535 Kevin White, UChicago 45a7f38144f9a29dee25104eaf2715fc https://www.encodeproject.org/files/ENCFF545ZEG/@@download/ENCFF545ZEG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/20/33260d86-af72-4aaf-834e-1d807d61f34c/ENCFF545ZEG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF769BMN bam bam alignments dm3 ENCSR215MXM Control ChIP-seq /fly-donors/ENCDO398PZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41056/'], '@type': ['Target', 'Item'], 'name': 'CG8359-dmelanogaster', 'label': 'CG8359', '@id': '/targets/CG8359-dmelanogaster/', 'title': 'CG8359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c159a795-393a-4642-9028-3525fb9494d2', 'status': 'released'} dm3 3R 4623242 4647202 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF545ZEG/, /files/ENCFF059UHX/ 642472175 Kevin White, UChicago a2f945c48a446b4d05664e1404fad562 https://www.encodeproject.org/files/ENCFF769BMN/@@download/ENCFF769BMN.bam released s3://encode-public/2016/12/22/0c30cfd9-a3e3-40ab-a42b-e6ce64a4a524/ENCFF769BMN.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF408PSP bam bam alignments dm6 ENCSR215MXM Control ChIP-seq /fly-donors/ENCDO398PZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41056/'], '@type': ['Target', 'Item'], 'name': 'CG8359-dmelanogaster', 'label': 'CG8359', '@id': '/targets/CG8359-dmelanogaster/', 'title': 'CG8359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c159a795-393a-4642-9028-3525fb9494d2', 'status': 'released'} dm3 3R 4623242 4647202 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF545ZEG/, /files/ENCFF479RCH/ 633254005 Kevin White, UChicago 5bb61aab3962c938cc90870ad86ffaf6 https://www.encodeproject.org/files/ENCFF408PSP/@@download/ENCFF408PSP.bam released s3://encode-public/2016/12/22/39f94b8d-861d-4cbe-9f12-babc819eab12/ENCFF408PSP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF728XYS bigWig bigWig signal of unique reads dm3 ENCSR215MXM Control ChIP-seq /fly-donors/ENCDO398PZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41056/'], '@type': ['Target', 'Item'], 'name': 'CG8359-dmelanogaster', 'label': 'CG8359', '@id': '/targets/CG8359-dmelanogaster/', 'title': 'CG8359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c159a795-393a-4642-9028-3525fb9494d2', 'status': 'released'} dm3 3R 4623242 4647202 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF769BMN/ 15301431 Kevin White, UChicago 8ac63890d84108c30f17c8e8290666b3 https://www.encodeproject.org/files/ENCFF728XYS/@@download/ENCFF728XYS.bigWig released s3://encode-public/2017/01/03/b6b609e4-380d-41e4-abd6-a2f8ec85fc20/ENCFF728XYS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF459WOR bigWig bigWig read-depth normalized signal dm3 ENCSR215MXM Control ChIP-seq /fly-donors/ENCDO398PZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41056/'], '@type': ['Target', 'Item'], 'name': 'CG8359-dmelanogaster', 'label': 'CG8359', '@id': '/targets/CG8359-dmelanogaster/', 'title': 'CG8359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c159a795-393a-4642-9028-3525fb9494d2', 'status': 'released'} dm3 3R 4623242 4647202 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF769BMN/ 15338321 Kevin White, UChicago 5d328824cb6aa28f595cd78d858bb413 https://www.encodeproject.org/files/ENCFF459WOR/@@download/ENCFF459WOR.bigWig released s3://encode-public/2017/01/03/d2aa24fb-b545-4b87-ad89-e1a94c714ca1/ENCFF459WOR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF320LTR bigWig bigWig read-depth normalized signal dm6 ENCSR215MXM Control ChIP-seq /fly-donors/ENCDO398PZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41056/'], '@type': ['Target', 'Item'], 'name': 'CG8359-dmelanogaster', 'label': 'CG8359', '@id': '/targets/CG8359-dmelanogaster/', 'title': 'CG8359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c159a795-393a-4642-9028-3525fb9494d2', 'status': 'released'} dm3 3R 4623242 4647202 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF408PSP/ 17463884 Kevin White, UChicago 2900d1f007ed1ee6fe4c932e1145cc19 https://www.encodeproject.org/files/ENCFF320LTR/@@download/ENCFF320LTR.bigWig released s3://encode-public/2017/01/04/0f54a8f2-1834-4278-9f51-4dc40c96e529/ENCFF320LTR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF134XVQ bigWig bigWig signal of unique reads dm6 ENCSR215MXM Control ChIP-seq /fly-donors/ENCDO398PZD/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41056/'], '@type': ['Target', 'Item'], 'name': 'CG8359-dmelanogaster', 'label': 'CG8359', '@id': '/targets/CG8359-dmelanogaster/', 'title': 'CG8359 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c159a795-393a-4642-9028-3525fb9494d2', 'status': 'released'} dm3 3R 4623242 4647202 DNA 2017-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF408PSP/ 17419210 Kevin White, UChicago 4b4289b43ce8322df0331f04ea4d185b https://www.encodeproject.org/files/ENCFF134XVQ/@@download/ENCFF134XVQ.bigWig released s3://encode-public/2017/01/04/cb90e26c-7553-4d6c-8e40-b4f3c8f8bb99/ENCFF134XVQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF719NEI fastq fastq reads ENCSR997RBV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8626/'], '@type': ['Target', 'Item'], 'name': 'TP63-human', 'label': 'TP63', '@id': '/targets/TP63-human/', 'title': 'TP63 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb17f88d-da0c-4651-8be0-26b55424862f', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF084GJT/ 2805780996 Michael Snyder, Stanford e39fc9b4155ec24489afd63ad8c14f8c SRA:SRR16814821 https://www.encodeproject.org/files/ENCFF719NEI/@@download/ENCFF719NEI.fastq.gz Illumina HiSeq 4000 /files/ENCFF247YUV/ released s3://encode-public/2018/12/20/478987ed-d0b6-4473-8c13-d5c8f9986600/ENCFF719NEI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF084GJT fastq fastq reads ENCSR997RBV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8626/'], '@type': ['Target', 'Item'], 'name': 'TP63-human', 'label': 'TP63', '@id': '/targets/TP63-human/', 'title': 'TP63 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb17f88d-da0c-4651-8be0-26b55424862f', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF719NEI/ 2319146400 Michael Snyder, Stanford 18e854c2af1c9bd0fbb64d1448c5d3e3 SRA:SRR16814821 https://www.encodeproject.org/files/ENCFF084GJT/@@download/ENCFF084GJT.fastq.gz Illumina HiSeq 4000 /files/ENCFF835CVB/ released s3://encode-public/2018/12/20/f71a9e14-a0c1-4166-8f44-c1b964d2a2fc/ENCFF084GJT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF693KNY bam bam unfiltered alignments GRCh38 ENCSR997RBV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8626/'], '@type': ['Target', 'Item'], 'name': 'TP63-human', 'label': 'TP63', '@id': '/targets/TP63-human/', 'title': 'TP63 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb17f88d-da0c-4651-8be0-26b55424862f', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF084GJT/, /files/ENCFF719NEI/ 4627592625 ENCODE Processing Pipeline 412c979d6e22238ce1fecca779786b8a https://www.encodeproject.org/files/ENCFF693KNY/@@download/ENCFF693KNY.bam released s3://encode-public/2020/04/21/89a8d48d-f676-46b4-a070-e230901090c9/ENCFF693KNY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF049BVJ bam bam alignments GRCh38 ENCSR997RBV Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8626/'], '@type': ['Target', 'Item'], 'name': 'TP63-human', 'label': 'TP63', '@id': '/targets/TP63-human/', 'title': 'TP63 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb17f88d-da0c-4651-8be0-26b55424862f', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF084GJT/, /files/ENCFF719NEI/ 3013483020 ENCODE Processing Pipeline 3644b0ee1a74ed0c10f7e140313e61da https://www.encodeproject.org/files/ENCFF049BVJ/@@download/ENCFF049BVJ.bam released s3://encode-public/2020/04/21/453d7616-7a2e-43ca-94ae-d126e23cd1ca/ENCFF049BVJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF201LQY bigWig bigWig read-depth normalized signal dm6 ENCSR863DOB Control ChIP-seq /fly-donors/ENCDO563RAV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38718/'], '@type': ['Target', 'Item'], 'name': 'D19A-dmelanogaster', 'label': 'D19A', '@id': '/targets/D19A-dmelanogaster/', 'title': 'D19A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'afbaf973-421d-42a1-bb0b-f6f6b187a509', 'status': 'released'} dm3 3L 6171688 6192136 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF300OKO/ 17639084 Kevin White, UChicago 33cf897665edd4a867e20d50f8490916 https://www.encodeproject.org/files/ENCFF201LQY/@@download/ENCFF201LQY.bigWig released s3://encode-public/2019/06/18/39393648-e0ed-4cfd-b9cb-c0c3ae8b6326/ENCFF201LQY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF129WSL fastq fastq reads ENCSR863DOB Control ChIP-seq /fly-donors/ENCDO563RAV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38718/'], '@type': ['Target', 'Item'], 'name': 'D19A-dmelanogaster', 'label': 'D19A', '@id': '/targets/D19A-dmelanogaster/', 'title': 'D19A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'afbaf973-421d-42a1-bb0b-f6f6b187a509', 'status': 'released'} dm3 3L 6171688 6192136 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 596783357 Kevin White, UChicago 2531e1cbc6ccacc123d520a3a380af9e https://www.encodeproject.org/files/ENCFF129WSL/@@download/ENCFF129WSL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/acfdcd9a-f3a8-4367-ac2a-4a4917afb821/ENCFF129WSL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF300OKO bam bam alignments dm6 ENCSR863DOB Control ChIP-seq /fly-donors/ENCDO563RAV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38718/'], '@type': ['Target', 'Item'], 'name': 'D19A-dmelanogaster', 'label': 'D19A', '@id': '/targets/D19A-dmelanogaster/', 'title': 'D19A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'afbaf973-421d-42a1-bb0b-f6f6b187a509', 'status': 'released'} dm3 3L 6171688 6192136 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF129WSL/, /files/ENCFF479RCH/ 795678747 Kevin White, UChicago f1206d833dac9948a5b9e8c278f0acf6 https://www.encodeproject.org/files/ENCFF300OKO/@@download/ENCFF300OKO.bam released s3://encode-public/2019/06/18/4d2f4bd8-ea26-476a-8c52-a1074a6e5d65/ENCFF300OKO.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF909RPY bigWig bigWig signal of unique reads dm6 ENCSR863DOB Control ChIP-seq /fly-donors/ENCDO563RAV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38718/'], '@type': ['Target', 'Item'], 'name': 'D19A-dmelanogaster', 'label': 'D19A', '@id': '/targets/D19A-dmelanogaster/', 'title': 'D19A (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'afbaf973-421d-42a1-bb0b-f6f6b187a509', 'status': 'released'} dm3 3L 6171688 6192136 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF300OKO/ 17621764 Kevin White, UChicago 1b845f5293fcc7d6170fea020275feb1 https://www.encodeproject.org/files/ENCFF909RPY/@@download/ENCFF909RPY.bigWig released s3://encode-public/2019/06/18/af71a41d-7593-49fc-97f9-a54f031edd41/ENCFF909RPY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF031DTJ fastq fastq reads ENCSR592WMK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF010AJN/ 3103438585 Michael Snyder, Stanford e1941f340b8471bf1410a9a679a197fd SRA:SRR14107504 https://www.encodeproject.org/files/ENCFF031DTJ/@@download/ENCFF031DTJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/11/23c3c479-db2f-4216-9553-2f93e63aef17/ENCFF031DTJ.fastq.gz ENCFF010AJN fastq fastq reads ENCSR592WMK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF031DTJ/ 2627552604 Michael Snyder, Stanford 0e4230a8fbdfbfbdb139e86e191f1a90 SRA:SRR14107504 https://www.encodeproject.org/files/ENCFF010AJN/@@download/ENCFF010AJN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/11/e1cbcde2-3df4-49a8-9b9a-4dfbb33459d4/ENCFF010AJN.fastq.gz ENCFF800PIB bam bam unfiltered alignments GRCh38 ENCSR592WMK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF010AJN/, /files/ENCFF031DTJ/ 5646506210 ENCODE Processing Pipeline d37e0479cc09f1295733570fe835699e https://www.encodeproject.org/files/ENCFF800PIB/@@download/ENCFF800PIB.bam released s3://encode-public/2020/04/21/32349078-c015-4fb6-bfd8-1bc10118a5dd/ENCFF800PIB.bam ENCODE4 v1.4.0 GRCh38 released ENCFF364JJX bam bam alignments GRCh38 ENCSR592WMK Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF010AJN/, /files/ENCFF031DTJ/ 4593403283 ENCODE Processing Pipeline fc42a1afbc247c60b6dfd840de806c7d https://www.encodeproject.org/files/ENCFF364JJX/@@download/ENCFF364JJX.bam released s3://encode-public/2020/04/21/91139ced-184c-44e1-9f97-ed3a70c9e966/ENCFF364JJX.bam ENCODE4 v1.4.0 GRCh38 released ENCFF962ZAE fastq fastq reads ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF310JWS/ 2249937883 Richard Myers, HAIB 2e54521969af51e542c48723ce08017a SRA:SRR6213571 https://www.encodeproject.org/files/ENCFF962ZAE/@@download/ENCFF962ZAE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/4e6a8f36-8e92-4439-acd0-a7494e377afb/ENCFF962ZAE.fastq.gz ENCFF310JWS fastq fastq reads ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF962ZAE/ 2290566709 Richard Myers, HAIB b7034683190c8c1cf18a89e2802bc6fe SRA:SRR6213571 https://www.encodeproject.org/files/ENCFF310JWS/@@download/ENCFF310JWS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/c049d20f-24f8-482c-9d24-244d7ede4870/ENCFF310JWS.fastq.gz ENCFF928EPC bam bam alignments hg19 ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF962ZAE/, /files/ENCFF807MUK/, /files/ENCFF310JWS/ 3856209320 ENCODE Processing Pipeline 12ae0700c9726d1aff42c1c59abf351c https://www.encodeproject.org/files/ENCFF928EPC/@@download/ENCFF928EPC.bam released s3://encode-public/2017/02/02/1ad2fcca-0dcc-4a6d-b606-69d0fe36976c/ENCFF928EPC.bam ENCODE3 hg19 archived ENCFF857IPY bam bam unfiltered alignments hg19 ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF962ZAE/, /files/ENCFF807MUK/, /files/ENCFF310JWS/ 5489443434 ENCODE Processing Pipeline 77950219118c617dcaaad53110afa27c https://www.encodeproject.org/files/ENCFF857IPY/@@download/ENCFF857IPY.bam released s3://encode-public/2017/02/02/873551cf-6006-4c9e-95b0-6d0a66b4da12/ENCFF857IPY.bam ENCODE3 hg19 archived ENCFF782OBW bam bam unfiltered alignments GRCh38 ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF962ZAE/, /files/ENCFF643CGH/, /files/ENCFF310JWS/ 5513953456 ENCODE Processing Pipeline f2b8149dda4f77a1e36a0ff3d658aa91 https://www.encodeproject.org/files/ENCFF782OBW/@@download/ENCFF782OBW.bam released s3://encode-public/2017/02/02/b8dddbcb-d6c1-4c2f-9d57-c759fa08474e/ENCFF782OBW.bam ENCODE3 GRCh38 archived ENCFF230BNN bam bam alignments GRCh38 ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF962ZAE/, /files/ENCFF643CGH/, /files/ENCFF310JWS/ 3862046214 ENCODE Processing Pipeline ebcba40f4c1a3ed92df74000e8f323c1 https://www.encodeproject.org/files/ENCFF230BNN/@@download/ENCFF230BNN.bam released s3://encode-public/2017/02/02/4fa9992e-56ba-4be4-8f1a-23153d6493c6/ENCFF230BNN.bam ENCODE3 GRCh38 archived ENCFF088XSG bam bam unfiltered alignments GRCh38 ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF310JWS/, /files/ENCFF962ZAE/ 5527096565 ENCODE Processing Pipeline 46cbbd8223b0df21658a06ba65cf0b9d https://www.encodeproject.org/files/ENCFF088XSG/@@download/ENCFF088XSG.bam released s3://encode-public/2020/10/28/1462fce5-fe65-4f88-b022-154f1ac322fb/ENCFF088XSG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF697GHW bam bam alignments GRCh38 ENCSR452KMJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF310JWS/, /files/ENCFF962ZAE/ 3635109327 ENCODE Processing Pipeline 77ab66e679f287b1db372461f0a8ecf5 https://www.encodeproject.org/files/ENCFF697GHW/@@download/ENCFF697GHW.bam released s3://encode-public/2020/10/28/e88a8417-3b4d-414d-b050-1c4921836e8d/ENCFF697GHW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF738KOX fastq fastq reads ENCSR136DEQ Control ChIP-seq /fly-donors/ENCDO745FFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34277/'], '@type': ['Target', 'Item'], 'name': 'gcm-dmelanogaster', 'label': 'gcm', '@id': '/targets/gcm-dmelanogaster/', 'title': 'gcm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21ae6ac8-86a1-4005-aa20-53fd92d8de97', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1315475783 Kevin White, UChicago 9ec890aaa60db5ae50e9d2c38392c24f https://www.encodeproject.org/files/ENCFF738KOX/@@download/ENCFF738KOX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/2392b414-01a7-4544-a562-0d5ee8b6486c/ENCFF738KOX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF246DAS bam bam alignments dm6 ENCSR136DEQ Control ChIP-seq /fly-donors/ENCDO745FFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34277/'], '@type': ['Target', 'Item'], 'name': 'gcm-dmelanogaster', 'label': 'gcm', '@id': '/targets/gcm-dmelanogaster/', 'title': 'gcm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21ae6ac8-86a1-4005-aa20-53fd92d8de97', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF738KOX/, /files/ENCFF479RCH/ 1749743519 Kevin White, UChicago 9162c72f396fbccfd328dd21f2e30ca5 https://www.encodeproject.org/files/ENCFF246DAS/@@download/ENCFF246DAS.bam released s3://encode-public/2019/04/13/64b026b0-25f2-4edf-acb7-7a8edab76aff/ENCFF246DAS.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF643EEV bigWig bigWig read-depth normalized signal dm6 ENCSR136DEQ Control ChIP-seq /fly-donors/ENCDO745FFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34277/'], '@type': ['Target', 'Item'], 'name': 'gcm-dmelanogaster', 'label': 'gcm', '@id': '/targets/gcm-dmelanogaster/', 'title': 'gcm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21ae6ac8-86a1-4005-aa20-53fd92d8de97', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF246DAS/ 17753590 Kevin White, UChicago 25fdf71ff759e4e2c2bfbad92882b18e https://www.encodeproject.org/files/ENCFF643EEV/@@download/ENCFF643EEV.bigWig released s3://encode-public/2019/04/16/d95fa644-43ae-46da-aff6-cfe14ead2876/ENCFF643EEV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF007SNF bigWig bigWig signal of unique reads dm6 ENCSR136DEQ Control ChIP-seq /fly-donors/ENCDO745FFN/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/34277/'], '@type': ['Target', 'Item'], 'name': 'gcm-dmelanogaster', 'label': 'gcm', '@id': '/targets/gcm-dmelanogaster/', 'title': 'gcm (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '21ae6ac8-86a1-4005-aa20-53fd92d8de97', 'status': 'released'} dm3 2L 9542206 9642121 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF246DAS/ 17837827 Kevin White, UChicago 3d617918162338126b7f04681d625d5d https://www.encodeproject.org/files/ENCFF007SNF/@@download/ENCFF007SNF.bigWig released s3://encode-public/2019/04/16/3869fd21-8987-4ff9-bc91-5729036fce46/ENCFF007SNF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF666WRT fastq fastq reads ENCSR449RSE Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0001383 muscle of leg tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1145741291 Zhiping Weng, UMass 33dc1f7b1c9576d31004cc15a484832e SRA:SRR642527 https://www.encodeproject.org/files/ENCFF666WRT/@@download/ENCFF666WRT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/17/5ede8c2b-6692-475e-a73a-b530abd5ccab/ENCFF666WRT.fastq.gz low read length ENCFF301YLR bam bam unfiltered alignments hg19 ENCSR449RSE Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0001383 muscle of leg tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF666WRT/, /files/ENCFF807MUK/ 1418729567 ENCODE Processing Pipeline 4bffe7b0b3de4444522c4037bea2b4aa https://www.encodeproject.org/files/ENCFF301YLR/@@download/ENCFF301YLR.bam released s3://encode-public/2016/12/19/d0a1acc0-5f25-4552-9813-4d0db64f9b9e/ENCFF301YLR.bam ENCODE3 hg19 archived low read length ENCFF008FSM bam bam alignments hg19 ENCSR449RSE Control ChIP-seq /human-donors/ENCDO711IWZ/ UBERON:0001383 muscle of leg tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF666WRT/, 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/files/ENCFF282SBH/ 1079060423 ENCODE Processing Pipeline 4cd58c84f878f0fde550607066462c99 https://www.encodeproject.org/files/ENCFF629QLU/@@download/ENCFF629QLU.bam released s3://encode-public/2016/12/19/e366d800-0fec-4c73-825f-b0dcc1345e0e/ENCFF629QLU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF182DCG bam bam alignments hg19 ENCSR503UNI Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF282SBH/ 621630674 ENCODE Processing Pipeline 7e174b0ffed5b1136871b142afabcd8e https://www.encodeproject.org/files/ENCFF182DCG/@@download/ENCFF182DCG.bam released s3://encode-public/2016/12/19/f46261a1-f623-4ff3-8490-021d757fef8b/ENCFF182DCG.bam ENCODE3 hg19 archived low read depth, low read length ENCFF930IPW bam bam unfiltered alignments GRCh38 ENCSR503UNI Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF282SBH/ 1081870154 ENCODE Processing Pipeline 232e2351a6ca63432dd402eae000ed60 https://www.encodeproject.org/files/ENCFF930IPW/@@download/ENCFF930IPW.bam released s3://encode-public/2016/12/19/455bde68-d320-42c3-8edb-a70d8d8605bc/ENCFF930IPW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF209UMN bam bam alignments GRCh38 ENCSR503UNI Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF282SBH/ 621325038 ENCODE Processing Pipeline 0b8e635411cabe8ee72c06729550c9f0 https://www.encodeproject.org/files/ENCFF209UMN/@@download/ENCFF209UMN.bam released s3://encode-public/2016/12/19/74a2ae7c-d1bc-41ce-92e2-ec85c2802a16/ENCFF209UMN.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF819BLE bam bam alignments GRCh38 ENCSR503UNI Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF282SBH/ 673509070 ENCODE Processing Pipeline 2d69475094a589ddf3c9b630e3e0f14f https://www.encodeproject.org/files/ENCFF819BLE/@@download/ENCFF819BLE.bam released s3://encode-public/2020/11/13/1d547be1-28e0-49c6-9d95-70ffdb2ceb3c/ENCFF819BLE.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF562XET bam bam unfiltered alignments GRCh38 ENCSR503UNI Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF282SBH/ 1053965347 ENCODE Processing Pipeline 2763a0e8556d67fd94601b3f628bb0cb https://www.encodeproject.org/files/ENCFF562XET/@@download/ENCFF562XET.bam released s3://encode-public/2020/11/13/3145ff04-4a34-4f08-9508-ef5fd700f453/ENCFF562XET.bam ENCODE4 v1.6.1 GRCh38 released low read depth, low read length ENCFF752TIR fastq fastq reads ENCSR652ZAR Control ChIP-seq /worm-donors/ENCDO989FSA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181465/'], '@type': ['Target', 'Item'], 'name': 'fkh-3-celegans', 'label': 'fkh-3', '@id': '/targets/fkh-3-celegans/', 'title': 'fkh-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '49bda29a-ce1f-451b-ae71-d5555b416483', 'status': 'released'} ce11 X 13403136 13436729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 932729082 Kevin White, UChicago 202a0f1812379a3548d97cbdf364f5ef https://www.encodeproject.org/files/ENCFF752TIR/@@download/ENCFF752TIR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/bc8315b9-a9ee-4c63-893a-1162d9357c9e/ENCFF752TIR.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF883EJP bam bam alignments ce10 ENCSR652ZAR Control ChIP-seq /worm-donors/ENCDO989FSA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181465/'], '@type': ['Target', 'Item'], 'name': 'fkh-3-celegans', 'label': 'fkh-3', '@id': '/targets/fkh-3-celegans/', 'title': 'fkh-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '49bda29a-ce1f-451b-ae71-d5555b416483', 'status': 'released'} ce11 X 13403136 13436729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF752TIR/, /files/ENCFF987UMF/ 1230042614 Kevin White, UChicago 52d49b53c41934de18bde8c9cc8401ab https://www.encodeproject.org/files/ENCFF883EJP/@@download/ENCFF883EJP.bam released s3://encode-public/2016/10/04/7c8ce97a-7160-4a2c-b5d2-9264d847074b/ENCFF883EJP.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF955KVL bam bam alignments ce11 ENCSR652ZAR Control ChIP-seq /worm-donors/ENCDO989FSA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181465/'], '@type': ['Target', 'Item'], 'name': 'fkh-3-celegans', 'label': 'fkh-3', '@id': '/targets/fkh-3-celegans/', 'title': 'fkh-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '49bda29a-ce1f-451b-ae71-d5555b416483', 'status': 'released'} ce11 X 13403136 13436729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF752TIR/, /files/ENCFF586MOL/ 1231121893 Kevin White, UChicago 840ebfd588a37231afe771f241081741 https://www.encodeproject.org/files/ENCFF955KVL/@@download/ENCFF955KVL.bam released s3://encode-public/2016/10/05/9b864133-2f1c-41ec-b7aa-735b8ce06701/ENCFF955KVL.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF340FIC bigWig bigWig signal of unique reads ce10 ENCSR652ZAR Control ChIP-seq /worm-donors/ENCDO989FSA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181465/'], '@type': ['Target', 'Item'], 'name': 'fkh-3-celegans', 'label': 'fkh-3', '@id': '/targets/fkh-3-celegans/', 'title': 'fkh-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '49bda29a-ce1f-451b-ae71-d5555b416483', 'status': 'released'} ce11 X 13403136 13436729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF883EJP/ 10018142 Kevin White, UChicago a07b9af4e6fe4444daeaa8bd9a4d6a64 https://www.encodeproject.org/files/ENCFF340FIC/@@download/ENCFF340FIC.bigWig released s3://encode-public/2016/10/06/4cac11e2-9279-4b97-b340-52105868ee59/ENCFF340FIC.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF605PSN bigWig bigWig read-depth normalized signal ce10 ENCSR652ZAR Control ChIP-seq /worm-donors/ENCDO989FSA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181465/'], '@type': ['Target', 'Item'], 'name': 'fkh-3-celegans', 'label': 'fkh-3', '@id': '/targets/fkh-3-celegans/', 'title': 'fkh-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '49bda29a-ce1f-451b-ae71-d5555b416483', 'status': 'released'} ce11 X 13403136 13436729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF883EJP/ 9955453 Kevin White, UChicago 5d4c03291b59317b265ac8132f657927 https://www.encodeproject.org/files/ENCFF605PSN/@@download/ENCFF605PSN.bigWig released s3://encode-public/2016/10/06/7d96fb00-c1f3-4645-a6ad-7cb6a498ada8/ENCFF605PSN.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF200TWC bigWig bigWig signal of unique reads ce11 ENCSR652ZAR Control ChIP-seq /worm-donors/ENCDO989FSA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181465/'], '@type': ['Target', 'Item'], 'name': 'fkh-3-celegans', 'label': 'fkh-3', '@id': '/targets/fkh-3-celegans/', 'title': 'fkh-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '49bda29a-ce1f-451b-ae71-d5555b416483', 'status': 'released'} ce11 X 13403136 13436729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF955KVL/ 10018144 Kevin White, UChicago 28a695dd0b7baf05fcc92ac32a23f69f https://www.encodeproject.org/files/ENCFF200TWC/@@download/ENCFF200TWC.bigWig released s3://encode-public/2016/10/06/d59e409e-f867-4941-8cae-8dd916ad879a/ENCFF200TWC.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF329NVW bigWig bigWig read-depth normalized signal ce11 ENCSR652ZAR Control ChIP-seq /worm-donors/ENCDO989FSA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181465/'], '@type': ['Target', 'Item'], 'name': 'fkh-3-celegans', 'label': 'fkh-3', '@id': '/targets/fkh-3-celegans/', 'title': 'fkh-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '49bda29a-ce1f-451b-ae71-d5555b416483', 'status': 'released'} ce11 X 13403136 13436729 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF955KVL/ 9955447 Kevin White, UChicago 49ca0187e76222067e894fc5e8c3b07f https://www.encodeproject.org/files/ENCFF329NVW/@@download/ENCFF329NVW.bigWig released s3://encode-public/2016/10/06/ec33003f-0e69-4e5f-b1b3-aa2dc324f0c7/ENCFF329NVW.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF991CCC fastq fastq reads ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF236USK/ 3359987323 Michael Snyder, Stanford 6ce82adb05cebd7684b66dc889866937 SRA:SRR6214387 https://www.encodeproject.org/files/ENCFF991CCC/@@download/ENCFF991CCC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/c568098b-2005-4b26-bf86-95a16a80bd15/ENCFF991CCC.fastq.gz mild to moderate bottlenecking ENCFF236USK fastq fastq reads ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF991CCC/ 4011913928 Michael Snyder, Stanford 2d3da11573cb11d7db24cbed68f0fa3c SRA:SRR6214387 https://www.encodeproject.org/files/ENCFF236USK/@@download/ENCFF236USK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/08/2b500ed3-c385-456d-93e7-5a8fa4542b43/ENCFF236USK.fastq.gz mild to moderate bottlenecking ENCFF593LHC bam bam unfiltered alignments hg19 ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF236USK/, /files/ENCFF991CCC/ 7055601043 ENCODE Processing Pipeline 7edc3fa3c97426ba9012578bc08352d8 https://www.encodeproject.org/files/ENCFF593LHC/@@download/ENCFF593LHC.bam released s3://encode-public/2017/03/17/6b95846f-6431-49c6-8982-02aa60465303/ENCFF593LHC.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF479ZSZ bam bam unfiltered alignments GRCh38 ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF236USK/, /files/ENCFF991CCC/ 7069462661 ENCODE Processing Pipeline f78f3896d94cf63cc63a6ba58cae5652 https://www.encodeproject.org/files/ENCFF479ZSZ/@@download/ENCFF479ZSZ.bam released s3://encode-public/2017/03/17/5da562d7-5195-4e90-b115-eafacae80804/ENCFF479ZSZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF097VOB bam bam alignments GRCh38 ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF236USK/, /files/ENCFF991CCC/ 5566085661 ENCODE Processing Pipeline 4d806612350bbb8c59eaf58f9e4723a1 https://www.encodeproject.org/files/ENCFF097VOB/@@download/ENCFF097VOB.bam released s3://encode-public/2017/03/17/594f82b3-6cb5-4b9f-a73f-d4bb7fc90f55/ENCFF097VOB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF571CAV bam bam alignments hg19 ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF236USK/, /files/ENCFF991CCC/ 5555183111 ENCODE Processing Pipeline 9283989c5d156fe174b3f436496010f0 https://www.encodeproject.org/files/ENCFF571CAV/@@download/ENCFF571CAV.bam released s3://encode-public/2017/03/17/47b45d87-20df-456a-86c6-7a8c08a0684a/ENCFF571CAV.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF788QEI bam bam unfiltered alignments GRCh38 ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF991CCC/, /files/ENCFF236USK/ 7064812161 ENCODE Processing Pipeline 7e49ef974a5ee3efad52a2985fa87980 https://www.encodeproject.org/files/ENCFF788QEI/@@download/ENCFF788QEI.bam released s3://encode-public/2020/06/02/8ddd2c6d-3676-4d36-9ba0-c172fc64bcb1/ENCFF788QEI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF356CDT bam bam alignments GRCh38 ENCSR790UYC Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0001114 right lobe of liver tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF991CCC/, /files/ENCFF236USK/ 5486902185 ENCODE Processing Pipeline 53b1c9f4c0a74df9b33fb88d46c75931 https://www.encodeproject.org/files/ENCFF356CDT/@@download/ENCFF356CDT.bam released s3://encode-public/2020/06/02/45b5274a-d633-496f-9ef3-bb12cbb1af33/ENCFF356CDT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF910CUV fastq fastq reads ENCSR530FXD Control ChIP-seq /fly-donors/ENCDO749YDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38116/'], '@type': ['Target', 'Item'], 'name': 'bab1-dmelanogaster', 'label': 'bab1', '@id': '/targets/bab1-dmelanogaster/', 'title': 'bab1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06f82eb8-379f-48b4-a2f5-3f80a8d5b515', 'status': 'released'} dm3 3L 1010189 1109596 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 604581897 Kevin White, UChicago 15e2e0887df874d693c43dfc12160c2d https://www.encodeproject.org/files/ENCFF910CUV/@@download/ENCFF910CUV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/c3c34819-c15e-4f4e-9a31-ced1cecb38ee/ENCFF910CUV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF456XBR bam bam alignments dm6 ENCSR530FXD Control ChIP-seq /fly-donors/ENCDO749YDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38116/'], '@type': ['Target', 'Item'], 'name': 'bab1-dmelanogaster', 'label': 'bab1', '@id': '/targets/bab1-dmelanogaster/', 'title': 'bab1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06f82eb8-379f-48b4-a2f5-3f80a8d5b515', 'status': 'released'} dm3 3L 1010189 1109596 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF910CUV/, /files/ENCFF479RCH/ 783911657 Kevin White, UChicago 3ba313b27d0ed9fe9f75a4962d7f9f91 https://www.encodeproject.org/files/ENCFF456XBR/@@download/ENCFF456XBR.bam released s3://encode-public/2019/04/13/356a93e7-4544-4f70-bb86-b3d87efbfb9a/ENCFF456XBR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF769XMB bigWig bigWig signal of unique reads dm6 ENCSR530FXD Control ChIP-seq /fly-donors/ENCDO749YDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38116/'], '@type': ['Target', 'Item'], 'name': 'bab1-dmelanogaster', 'label': 'bab1', '@id': '/targets/bab1-dmelanogaster/', 'title': 'bab1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06f82eb8-379f-48b4-a2f5-3f80a8d5b515', 'status': 'released'} dm3 3L 1010189 1109596 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF456XBR/ 17062884 Kevin White, UChicago b4721084c2f8f7aa75b4bcf61cfb810a https://www.encodeproject.org/files/ENCFF769XMB/@@download/ENCFF769XMB.bigWig released s3://encode-public/2019/04/16/ad41bb00-5e80-4a7c-9de0-e73a392a02dc/ENCFF769XMB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF311QNA bigWig bigWig read-depth normalized signal dm6 ENCSR530FXD Control ChIP-seq /fly-donors/ENCDO749YDY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38116/'], '@type': ['Target', 'Item'], 'name': 'bab1-dmelanogaster', 'label': 'bab1', '@id': '/targets/bab1-dmelanogaster/', 'title': 'bab1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '06f82eb8-379f-48b4-a2f5-3f80a8d5b515', 'status': 'released'} dm3 3L 1010189 1109596 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF456XBR/ 17083613 Kevin White, UChicago d2dfa0b11969f8c83c48dc4dbdf2b8f7 https://www.encodeproject.org/files/ENCFF311QNA/@@download/ENCFF311QNA.bigWig released s3://encode-public/2019/04/16/141da9d9-7d31-4762-94d6-87d26405755a/ENCFF311QNA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF427LBG bam bam redacted unfiltered alignments GRCh38 ENCSR704JMY Control ChIP-seq /human-donors/ENCDO651ROT/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF428ZLL/, /files/ENCFF771FGQ/ 817783431 ENCODE Processing Pipeline 475b5b48330b87b48809715e31f04d2f https://www.encodeproject.org/files/ENCFF427LBG/@@download/ENCFF427LBG.bam released s3://encode-public/2017/11/09/d217cb16-d675-461c-827b-feec5c429e24/ENCFF427LBG.bam ENCODE3 GRCh38 archived ENCFF088ELZ bam bam redacted alignments GRCh38 ENCSR704JMY Control ChIP-seq /human-donors/ENCDO651ROT/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF428ZLL/, /files/ENCFF771FGQ/ 668449911 ENCODE Processing Pipeline a1e969a6c55f74f10072ab58ad2f6a97 https://www.encodeproject.org/files/ENCFF088ELZ/@@download/ENCFF088ELZ.bam released s3://encode-public/2017/11/09/f2b81913-603f-4451-b3c5-cf618faed600/ENCFF088ELZ.bam ENCODE3 GRCh38 archived ENCFF219OTY bam bam redacted unfiltered alignments hg19 ENCSR704JMY Control ChIP-seq /human-donors/ENCDO651ROT/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF428ZLL/, /files/ENCFF771FGQ/ 804246816 ENCODE Processing Pipeline 832abf79acfb13d79707d86a23253168 https://www.encodeproject.org/files/ENCFF219OTY/@@download/ENCFF219OTY.bam released s3://encode-public/2018/01/20/145435a2-cc01-4d25-89b1-94cf89830345/ENCFF219OTY.bam ENCODE3 hg19 archived ENCFF179CMN bam bam redacted alignments hg19 ENCSR704JMY Control ChIP-seq /human-donors/ENCDO651ROT/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF428ZLL/, /files/ENCFF771FGQ/ 667540794 ENCODE Processing Pipeline ecf805f20b4a9b89b54e9c691d142ce2 https://www.encodeproject.org/files/ENCFF179CMN/@@download/ENCFF179CMN.bam released s3://encode-public/2018/01/20/78a98a51-5d51-47fb-95b2-a65e4c97eb0b/ENCFF179CMN.bam ENCODE3 hg19 archived ENCFF190DLL bam bam redacted alignments GRCh38 ENCSR704JMY Control ChIP-seq /human-donors/ENCDO651ROT/ NTR:0003013 placental basal plate tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF959RSI/, /files/ENCFF451OVJ/, /files/ENCFF110MCL/ 4031484230 ENCODE Processing Pipeline 34b478f55d749a755b7e430ad124ec7b https://www.encodeproject.org/files/ENCFF190DLL/@@download/ENCFF190DLL.bam released s3://encode-public/2021/01/28/d5f10e2e-20ae-4166-b378-5c871291101a/ENCFF190DLL.bam ENCODE4 v1.7.0 GRCh38 released ENCFF974UBB fastq fastq reads ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF588NFI/ 1904800365 Richard Myers, HAIB 64e4af2f101099e697db5e6f80c28569 SRA:SRR6213683 https://www.encodeproject.org/files/ENCFF974UBB/@@download/ENCFF974UBB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/94d1ecf0-607c-4be2-a882-d64c0e5e608c/ENCFF974UBB.fastq.gz ENCFF588NFI fastq fastq reads ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF974UBB/ 1978936904 Richard Myers, HAIB 2c49485329fc3d6991cff3c33b0cd963 SRA:SRR6213683 https://www.encodeproject.org/files/ENCFF588NFI/@@download/ENCFF588NFI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/52af25c0-00ca-4078-935b-b7659d0b8126/ENCFF588NFI.fastq.gz ENCFF441NVS bam bam unfiltered alignments GRCh38 ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF588NFI/, /files/ENCFF974UBB/, /files/ENCFF643CGH/ 4722230478 ENCODE Processing Pipeline a8c9f6f89891900efd655389dde53cb1 https://www.encodeproject.org/files/ENCFF441NVS/@@download/ENCFF441NVS.bam released s3://encode-public/2017/02/02/ea5a14df-80e3-43e1-be76-f5ce12db5604/ENCFF441NVS.bam ENCODE3 GRCh38 archived ENCFF273ALP bam bam unfiltered alignments hg19 ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF588NFI/, /files/ENCFF974UBB/, /files/ENCFF807MUK/ 4704039717 ENCODE Processing Pipeline 236339bbe7d95b75f3b1e9d5e0ab6fe2 https://www.encodeproject.org/files/ENCFF273ALP/@@download/ENCFF273ALP.bam released s3://encode-public/2017/02/02/391df257-bff1-4c9d-b191-76f25a084af7/ENCFF273ALP.bam ENCODE3 hg19 archived ENCFF062FML bam bam alignments hg19 ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF588NFI/, /files/ENCFF974UBB/, /files/ENCFF807MUK/ 3523031914 ENCODE Processing Pipeline 990099e19d7fa366acde515202a3a418 https://www.encodeproject.org/files/ENCFF062FML/@@download/ENCFF062FML.bam released s3://encode-public/2017/02/02/10f022bc-20e8-4093-96a2-d57cffb973c3/ENCFF062FML.bam ENCODE3 hg19 archived ENCFF023RNK bam bam alignments GRCh38 ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF588NFI/, /files/ENCFF974UBB/, /files/ENCFF643CGH/ 3527514631 ENCODE Processing Pipeline ead33e6a52d71b5b71ceab5982696e7e https://www.encodeproject.org/files/ENCFF023RNK/@@download/ENCFF023RNK.bam released s3://encode-public/2017/02/02/20f6c4de-ba67-4853-ae4f-bd48299b6f33/ENCFF023RNK.bam ENCODE3 GRCh38 archived ENCFF892SLG bam bam unfiltered alignments GRCh38 ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF588NFI/, /files/ENCFF974UBB/ 4705085467 ENCODE Processing Pipeline 1dd76796a2ef353aee42ac435177ac03 https://www.encodeproject.org/files/ENCFF892SLG/@@download/ENCFF892SLG.bam released s3://encode-public/2020/10/28/074b0efd-4dcc-4d28-b699-cdee580fd4c8/ENCFF892SLG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF450RKM bam bam alignments GRCh38 ENCSR466CAA Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0000996 vagina tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF588NFI/, /files/ENCFF974UBB/ 3339571681 ENCODE Processing Pipeline f83d56f5d239a414b2abc7b736dfc567 https://www.encodeproject.org/files/ENCFF450RKM/@@download/ENCFF450RKM.bam released s3://encode-public/2020/10/28/858babd0-0582-4ce4-9da9-d3f07c1fae77/ENCFF450RKM.bam ENCODE4 v1.5.1 GRCh38 released ENCFF061QLI bam bam redacted unfiltered alignments GRCh38 ENCSR128HTH Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF724AOD/, /files/ENCFF643CGH/, /files/ENCFF951ZQP/ 784718435 ENCODE Processing Pipeline c895146775465bfb43785d14c1339afe https://www.encodeproject.org/files/ENCFF061QLI/@@download/ENCFF061QLI.bam released s3://encode-public/2017/11/09/91e87ff6-d178-4efb-9f57-aae1a6b2c70e/ENCFF061QLI.bam ENCODE3 GRCh38 archived ENCFF482WRB bam bam redacted alignments GRCh38 ENCSR128HTH Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF724AOD/, /files/ENCFF643CGH/, /files/ENCFF951ZQP/ 629370239 ENCODE Processing Pipeline 7ca3cc52d5b3cdfb4542528855cc4f0c https://www.encodeproject.org/files/ENCFF482WRB/@@download/ENCFF482WRB.bam released s3://encode-public/2017/11/09/9d976842-0d78-4418-a3eb-5adf6d54a902/ENCFF482WRB.bam ENCODE3 GRCh38 archived ENCFF803RKX bam bam redacted alignments hg19 ENCSR128HTH Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF724AOD/, /files/ENCFF807MUK/, /files/ENCFF951ZQP/ 628463983 ENCODE Processing Pipeline 544ba68ff6837dc51300ee9e052ac378 https://www.encodeproject.org/files/ENCFF803RKX/@@download/ENCFF803RKX.bam released s3://encode-public/2018/01/20/c73de42e-e70a-4da1-8a62-9b48d4a7fada/ENCFF803RKX.bam ENCODE3 hg19 archived ENCFF480XWL bam bam redacted unfiltered alignments hg19 ENCSR128HTH Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF724AOD/, /files/ENCFF807MUK/, /files/ENCFF951ZQP/ 771629348 ENCODE Processing Pipeline 5703d649179c9eb6877c10209cd11fac https://www.encodeproject.org/files/ENCFF480XWL/@@download/ENCFF480XWL.bam released s3://encode-public/2018/01/20/a495f535-3057-452d-8bd6-ced73bdee2b1/ENCFF480XWL.bam ENCODE3 hg19 archived ENCFF085NAD bam bam redacted alignments GRCh38 ENCSR128HTH Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0001987 placenta tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF136DFH/, /files/ENCFF912KKQ/ 3684522560 ENCODE Processing Pipeline bce039fa4d7622f3c3bdedf3192666d4 https://www.encodeproject.org/files/ENCFF085NAD/@@download/ENCFF085NAD.bam released s3://encode-public/2021/01/28/b8d99419-050a-4fe4-972d-5bd107c6248a/ENCFF085NAD.bam ENCODE4 v1.7.0 GRCh38 released ENCFF352NPS fastq fastq reads ENCSR945JMM Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1043363298 Kevin White, UChicago 7234350041a960c61477940038ef27ba https://www.encodeproject.org/files/ENCFF352NPS/@@download/ENCFF352NPS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/e1a6f1a6-2b8d-4e19-bd74-8d4fb66a3f27/ENCFF352NPS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF140TAQ bam bam alignments dm6 ENCSR945JMM Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF352NPS/, /files/ENCFF479RCH/ 1338791475 Kevin White, UChicago 0118f110194c8de3f0e622ed58721bcf https://www.encodeproject.org/files/ENCFF140TAQ/@@download/ENCFF140TAQ.bam released s3://encode-public/2019/04/13/2f8b77b1-fe52-4d0e-a26a-cceaf1157e37/ENCFF140TAQ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF626GSW bigWig bigWig signal of unique reads dm6 ENCSR945JMM Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF140TAQ/ 17684660 Kevin White, UChicago 5ac4f00c16291f0f4bb46e40ddda784e https://www.encodeproject.org/files/ENCFF626GSW/@@download/ENCFF626GSW.bigWig released s3://encode-public/2019/04/16/8533c5e1-cb4e-48f1-b49e-d85cc4aad9b0/ENCFF626GSW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF512BVJ bigWig bigWig read-depth normalized signal dm6 ENCSR945JMM Control ChIP-seq /fly-donors/ENCDO384OMQ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43656/'], '@type': ['Target', 'Item'], 'name': 'tll-dmelanogaster', 'label': 'tll', '@id': '/targets/tll-dmelanogaster/', 'title': 'tll (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'c7f162d4-743a-4b28-a229-9a5769102b4a', 'status': 'released'} dm3 3R 30841669 30865664 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF140TAQ/ 17731708 Kevin White, UChicago acc0590259edab71b4643c9cd3ae9467 https://www.encodeproject.org/files/ENCFF512BVJ/@@download/ENCFF512BVJ.bigWig released s3://encode-public/2019/04/17/1b725b1e-08dc-4860-8bd4-6c51d24cb789/ENCFF512BVJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF867DWD fastq fastq reads ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF586WPQ/ 1879499118 Michael Snyder, Stanford 8e0180d7b160c72295eb8145df3c7941 SRA:SRR6212869 https://www.encodeproject.org/files/ENCFF867DWD/@@download/ENCFF867DWD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/11/03/297493a1-b00f-4ab2-b582-f02e75ecccba/ENCFF867DWD.fastq.gz mild to moderate bottlenecking ENCFF586WPQ fastq fastq reads ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF867DWD/ 2158699531 Michael Snyder, Stanford 9cc80a35ef4bc7bfa181bc7d04571716 SRA:SRR6212869 https://www.encodeproject.org/files/ENCFF586WPQ/@@download/ENCFF586WPQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/11/03/9c8d5ca5-9c04-450c-8116-94d26234f325/ENCFF586WPQ.fastq.gz mild to moderate bottlenecking ENCFF144SEW bam bam unfiltered alignments hg19 ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF586WPQ/, /files/ENCFF867DWD/, /files/ENCFF807MUK/ 3992540123 ENCODE Processing Pipeline a6b6fdd2d087296d5483ff7948c8b6f8 https://www.encodeproject.org/files/ENCFF144SEW/@@download/ENCFF144SEW.bam released s3://encode-public/2016/11/25/b4ddcc77-ddfe-42b4-8fe8-d7b3470445b1/ENCFF144SEW.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF170JAT bam bam unfiltered alignments GRCh38 ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF586WPQ/, /files/ENCFF867DWD/, /files/ENCFF643CGH/ 3999007490 ENCODE Processing Pipeline dd8132e6d860d2d3d11a7f38b89fe272 https://www.encodeproject.org/files/ENCFF170JAT/@@download/ENCFF170JAT.bam released s3://encode-public/2016/11/25/c2956d03-f53d-4d7d-a83f-a70c112dac28/ENCFF170JAT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF068ZJF bam bam alignments hg19 ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF586WPQ/, /files/ENCFF867DWD/, /files/ENCFF807MUK/ 3275544393 ENCODE Processing Pipeline c01c1e0f33fcec144d9963881b4c544c https://www.encodeproject.org/files/ENCFF068ZJF/@@download/ENCFF068ZJF.bam released s3://encode-public/2016/11/25/2351337e-4a87-4e25-aea4-acf7b581950e/ENCFF068ZJF.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF249KIQ bam bam alignments GRCh38 ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 101 /files/ENCFF586WPQ/, /files/ENCFF867DWD/, /files/ENCFF643CGH/ 3281473861 ENCODE Processing Pipeline 14b2ca168ac061c00d33032fd4e37cf9 https://www.encodeproject.org/files/ENCFF249KIQ/@@download/ENCFF249KIQ.bam released s3://encode-public/2016/11/25/2ee2270a-4e5f-4f62-9901-417e103a5369/ENCFF249KIQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF962WKF bam bam unfiltered alignments GRCh38 ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF867DWD/, /files/ENCFF586WPQ/ 3990056517 ENCODE Processing Pipeline 88720830a396dbb6c219d2881c421abb https://www.encodeproject.org/files/ENCFF962WKF/@@download/ENCFF962WKF.bam released s3://encode-public/2020/06/03/1bb57a70-f13f-4dd3-8f89-1507aaec8f97/ENCFF962WKF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF083KKS bam bam alignments GRCh38 ENCSR109IEL Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2016-11-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF867DWD/, /files/ENCFF586WPQ/ 3204505845 ENCODE Processing Pipeline bccd17b8e6d77090a5f6be118b69b839 https://www.encodeproject.org/files/ENCFF083KKS/@@download/ENCFF083KKS.bam released s3://encode-public/2020/06/03/4b0efea6-c233-4593-91d4-4339956840d0/ENCFF083KKS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF873IPH fastq fastq reads ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF065AHM/ 10317476089 Michael Snyder, Stanford c7f87f5aac337112f868e675595f8574 SRA:SRR6214010 https://www.encodeproject.org/files/ENCFF873IPH/@@download/ENCFF873IPH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/02/da285de4-1209-48d9-9beb-e2cf65e265a9/ENCFF873IPH.fastq.gz ENCFF065AHM fastq fastq reads ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF873IPH/ 10824464232 Michael Snyder, Stanford fd93a9cd7446194d4fe1156e3f247eed SRA:SRR6214010 https://www.encodeproject.org/files/ENCFF065AHM/@@download/ENCFF065AHM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/02/3f7b5144-093c-4ad4-9581-7fb11c4d2bda/ENCFF065AHM.fastq.gz ENCFF666IKO bam bam unfiltered alignments hg19 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF873IPH/, /files/ENCFF065AHM/ 20481325111 ENCODE Processing Pipeline 05bbf2c0c39301f4a245bafd9683550e https://www.encodeproject.org/files/ENCFF666IKO/@@download/ENCFF666IKO.bam released s3://encode-public/2017/02/07/550df2f4-9738-4246-93b9-d5b2019f1931/ENCFF666IKO.bam ENCODE3 hg19 archived ENCFF158ZFF bam bam alignments hg19 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF873IPH/, /files/ENCFF065AHM/ 9143555062 ENCODE Processing Pipeline bb6e841f10bc7ddb9ec9d23e1a0fe895 https://www.encodeproject.org/files/ENCFF158ZFF/@@download/ENCFF158ZFF.bam released s3://encode-public/2017/02/07/16eb987c-45ad-428d-aa81-b089362b6a8c/ENCFF158ZFF.bam ENCODE3 hg19 archived ENCFF058RHL bam bam unfiltered alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF873IPH/, /files/ENCFF065AHM/ 20545660306 ENCODE Processing Pipeline 2350482cc30800805965b894837a2416 https://www.encodeproject.org/files/ENCFF058RHL/@@download/ENCFF058RHL.bam released s3://encode-public/2017/02/07/88ab2b42-0400-4878-bd14-8f6da6415844/ENCFF058RHL.bam ENCODE3 GRCh38 archived ENCFF136TIZ bam bam alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF873IPH/, /files/ENCFF065AHM/ 9142018953 ENCODE Processing Pipeline cfe9a326c6207af56e44762fcdbcd022 https://www.encodeproject.org/files/ENCFF136TIZ/@@download/ENCFF136TIZ.bam released s3://encode-public/2017/02/07/ef18f834-282b-4b08-9411-98d130a0b006/ENCFF136TIZ.bam ENCODE3 GRCh38 archived ENCFF404FJG fastq fastq reads ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF204DFQ/ 8861383804 Michael Snyder, Stanford 00db4a486d4f6af639ec90ed8cf9c77d SRA:SRR6214008 https://www.encodeproject.org/files/ENCFF404FJG/@@download/ENCFF404FJG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/14/7ff302e5-dfb3-4b8f-b7ca-77f23e8f5308/ENCFF404FJG.fastq.gz ENCFF204DFQ fastq fastq reads ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF404FJG/ 8914919574 Michael Snyder, Stanford bf8588b6aca08eff80ea68d22d56bbca SRA:SRR6214008 https://www.encodeproject.org/files/ENCFF204DFQ/@@download/ENCFF204DFQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/06/14/0a0dd7a8-2367-4f1e-996e-e980a2463f26/ENCFF204DFQ.fastq.gz ENCFF308KKL bam bam unfiltered alignments hg19 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF404FJG/, /files/ENCFF204DFQ/, /files/ENCFF807MUK/ 16786235444 ENCODE Processing Pipeline b925ef891104c6f040c067a79fcee779 https://www.encodeproject.org/files/ENCFF308KKL/@@download/ENCFF308KKL.bam released s3://encode-public/2017/07/14/b0a80734-2843-410d-bf72-03abf5cdb175/ENCFF308KKL.bam ENCODE3 hg19 archived ENCFF025HKU bam bam unfiltered alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF404FJG/, /files/ENCFF204DFQ/, /files/ENCFF643CGH/ 16813229802 ENCODE Processing Pipeline 53236970142d34d112bc4b33caafbb3a https://www.encodeproject.org/files/ENCFF025HKU/@@download/ENCFF025HKU.bam released s3://encode-public/2017/07/14/64339cd9-dc93-4790-9913-7632e70dc7ae/ENCFF025HKU.bam ENCODE3 GRCh38 archived ENCFF775HLS bam bam alignments hg19 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF404FJG/, /files/ENCFF204DFQ/, /files/ENCFF807MUK/ 14273774142 ENCODE Processing Pipeline 43acc2d86e0c97de0b8a599487dac31b https://www.encodeproject.org/files/ENCFF775HLS/@@download/ENCFF775HLS.bam released s3://encode-public/2017/07/14/18afda78-fb6b-45fa-a714-9ee2cc030118/ENCFF775HLS.bam ENCODE3 hg19 archived ENCFF258IKI bam bam alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF404FJG/, /files/ENCFF204DFQ/, /files/ENCFF643CGH/ 14283205883 ENCODE Processing Pipeline dc8032a17d864debc728844a3216ece4 https://www.encodeproject.org/files/ENCFF258IKI/@@download/ENCFF258IKI.bam released s3://encode-public/2017/07/14/dfa418ea-a500-4260-82e1-203d90e0f511/ENCFF258IKI.bam ENCODE3 GRCh38 archived ENCFF640SBW bam bam unfiltered alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF404FJG/, /files/ENCFF204DFQ/ 16730060236 ENCODE Processing Pipeline bdca9b9862a2cdb204d9295aab048509 https://www.encodeproject.org/files/ENCFF640SBW/@@download/ENCFF640SBW.bam released s3://encode-public/2020/06/02/bbc82ad4-dc9c-45c7-8717-3c0fd888b513/ENCFF640SBW.bam ENCODE4 v1.4.0 GRCh38 released ENCFF030RQN bam bam alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF873IPH/, /files/ENCFF065AHM/ 10394106461 ENCODE Processing Pipeline 26c6739feee991e9a5404ed8454bbbaf https://www.encodeproject.org/files/ENCFF030RQN/@@download/ENCFF030RQN.bam released s3://encode-public/2020/06/02/5fce5989-b7bb-44db-b676-9726c065afff/ENCFF030RQN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF115ZGE bam bam unfiltered alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF873IPH/, /files/ENCFF065AHM/ 20829534574 ENCODE Processing Pipeline 82e76c0dd1e1f0259532f05a932d1b85 https://www.encodeproject.org/files/ENCFF115ZGE/@@download/ENCFF115ZGE.bam released s3://encode-public/2020/06/02/5cb1e3d6-3a67-479d-9d59-d7b03c52c32f/ENCFF115ZGE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF358ZXM bam bam alignments GRCh38 ENCSR821YOI Control ChIP-seq /human-donors/ENCDO000ABF/ EFO:0001184 HEK293T cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF404FJG/, /files/ENCFF204DFQ/ 14101515102 ENCODE Processing Pipeline 9382b173c268e6ef8d76eaf8bd64759f https://www.encodeproject.org/files/ENCFF358ZXM/@@download/ENCFF358ZXM.bam released s3://encode-public/2020/06/02/33866d80-42cf-4b72-8613-471f3c2c3c06/ENCFF358ZXM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF270NSD fastq fastq reads ENCSR399MAN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_2 50 single-ended 2207459011 Richard Myers, HAIB 0e13e9ba67a844c7b57aaf673415621e SRA:SRR8660335 https://www.encodeproject.org/files/ENCFF270NSD/@@download/ENCFF270NSD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/62013a93-a41f-48cb-a245-4e01f519495f/ENCFF270NSD.fastq.gz ENCFF474OML bam bam alignments hg19 ENCSR399MAN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_2 50 /files/ENCFF270NSD/, /files/ENCFF807MUK/ 1743720583 ENCODE Processing Pipeline bf146def7b2ab252c3bbb1be6ea3e53e https://www.encodeproject.org/files/ENCFF474OML/@@download/ENCFF474OML.bam released s3://encode-public/2015/11/17/6aa993de-391c-40ee-a1a6-22e25a786b30/ENCFF474OML.bam ENCODE3 hg19 archived ENCFF896YZZ bam bam unfiltered alignments GRCh38 ENCSR399MAN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_2 50 /files/ENCFF270NSD/, /files/ENCFF643CGH/ 2324777119 ENCODE Processing Pipeline abf565af3b909295bcbfb3435600fa6c https://www.encodeproject.org/files/ENCFF896YZZ/@@download/ENCFF896YZZ.bam released s3://encode-public/2016/05/06/eddf9120-dcd2-46c5-84cd-b0b4f43c46a6/ENCFF896YZZ.bam ENCODE3 GRCh38 archived ENCFF240GRT bam bam alignments GRCh38 ENCSR399MAN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_2 50 /files/ENCFF270NSD/, /files/ENCFF643CGH/ 1743955198 ENCODE Processing Pipeline 549f42d8cdcac224cd1abe430a96d6aa https://www.encodeproject.org/files/ENCFF240GRT/@@download/ENCFF240GRT.bam released s3://encode-public/2016/05/06/d73d94af-66c2-496c-9507-d558bdaf4480/ENCFF240GRT.bam ENCODE3 GRCh38 archived ENCFF924HWX bam bam unfiltered alignments hg19 ENCSR399MAN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_2 50 /files/ENCFF270NSD/, /files/ENCFF807MUK/ 2318614954 ENCODE Processing Pipeline 3ad95a8d2623dab5f76afd85a8d2bc45 https://www.encodeproject.org/files/ENCFF924HWX/@@download/ENCFF924HWX.bam released s3://encode-public/2016/09/10/be861453-4d75-40f4-af9e-6230d0e12041/ENCFF924HWX.bam ENCODE3 hg19 archived ENCFF048AUB bam bam alignments GRCh38 ENCSR399MAN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_2 50 /files/ENCFF110MCL/, /files/ENCFF270NSD/ 1833009633 ENCODE Processing Pipeline c24a56a46f5c3a376ca88d4af3ec29a2 https://www.encodeproject.org/files/ENCFF048AUB/@@download/ENCFF048AUB.bam released s3://encode-public/2020/10/27/aff17ea7-5ddd-431b-9685-90af66a3aa4f/ENCFF048AUB.bam ENCODE4 v1.5.1 GRCh38 released ENCFF658ISG bam bam unfiltered alignments GRCh38 ENCSR399MAN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 5 5_2 50 /files/ENCFF110MCL/, /files/ENCFF270NSD/ 2309216122 ENCODE Processing Pipeline e35ecf7ef5b70a7b3ed99f46876c2096 https://www.encodeproject.org/files/ENCFF658ISG/@@download/ENCFF658ISG.bam released s3://encode-public/2020/10/27/2a048c88-4c27-489a-9664-1d336a4a08ca/ENCFF658ISG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF000POM bam bam alignments hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000POU/ 1132607212 Richard Myers, HAIB 4aca211c2f48cf08966328fb83241c88 https://www.encodeproject.org/files/ENCFF000POM/@@download/ENCFF000POM.bam archived s3://encode-public/2012/01/23/da67e973-7c18-4a86-94c4-3670e05059f3/ENCFF000POM.bam Lab custom hg19 archived low read length ENCFF000PON bam bam alignments hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000POV/ 1255002063 Richard Myers, HAIB 544bc48bfecec4c24a97fe11faea229b https://www.encodeproject.org/files/ENCFF000PON/@@download/ENCFF000PON.bam archived s3://encode-public/2012/01/23/0760ffbe-3477-4f7f-ab2e-682cb2876861/ENCFF000PON.bam Lab custom hg19 archived low read length ENCFF000POP bigWig bigWig raw signal hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 3438096 Richard Myers, HAIB 2c98382ee875a45626f7d2a7647952b0 https://www.encodeproject.org/files/ENCFF000POP/@@download/ENCFF000POP.bigWig archived s3://encode-public/2012/01/23/6a7ffda5-aaea-46bb-b6c1-84396881e493/ENCFF000POP.bigWig Lab custom hg19 archived low read length ENCFF000POR bigWig bigWig raw signal hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 3190464 Richard Myers, HAIB c85f65ed7bab9539e2467a8ada0be086 https://www.encodeproject.org/files/ENCFF000POR/@@download/ENCFF000POR.bigWig archived s3://encode-public/2012/01/23/19a9cf54-3fba-4029-abb8-774121116ebc/ENCFF000POR.bigWig Lab custom hg19 archived low read length ENCFF000POU fastq fastq reads ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 956393981 Richard Myers, HAIB 2911a81cd756194f0f9df8f9d95515cd https://www.encodeproject.org/files/ENCFF000POU/@@download/ENCFF000POU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/7c65b833-29b1-4288-8fd6-5cced8948080/ENCFF000POU.fastq.gz low read length ENCFF000POV fastq fastq reads ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 single-ended 1184733341 Richard Myers, HAIB e7e128713822864a5117b3023438889b https://www.encodeproject.org/files/ENCFF000POV/@@download/ENCFF000POV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/d32cdfc8-ffc3-4a69-98ec-ec970237c7d0/ENCFF000POV.fastq.gz low read length ENCFF690SQN bam bam unfiltered alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000POV/ 1497629800 ENCODE Processing Pipeline c65bb8f4bbfd8a6d2bc9488f003345e0 https://www.encodeproject.org/files/ENCFF690SQN/@@download/ENCFF690SQN.bam released s3://encode-public/2016/10/26/1cd790a9-8503-44e3-818c-cef93428fb62/ENCFF690SQN.bam ENCODE3 GRCh38 archived low read length ENCFF760BGX bam bam unfiltered alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000POU/ 1381472172 ENCODE Processing Pipeline 354e444950c29c40bc0a92f6ec83f8fb https://www.encodeproject.org/files/ENCFF760BGX/@@download/ENCFF760BGX.bam released s3://encode-public/2016/10/26/a5496895-f6c8-4830-9af4-cc3f3561e71e/ENCFF760BGX.bam ENCODE3 GRCh38 archived low read length ENCFF175NMQ bam bam alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000POV/ 1053046281 ENCODE Processing Pipeline b4cbe96c37eb7ecf22c8663007900a8b https://www.encodeproject.org/files/ENCFF175NMQ/@@download/ENCFF175NMQ.bam released s3://encode-public/2016/10/26/5f0d59a5-cf1c-4233-8bf8-7772731ea475/ENCFF175NMQ.bam ENCODE3 GRCh38 archived low read length ENCFF285LVE bam bam alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000POU/ 932147176 ENCODE Processing Pipeline d32d8c9312ae062f4b7dfd1802a27182 https://www.encodeproject.org/files/ENCFF285LVE/@@download/ENCFF285LVE.bam released s3://encode-public/2016/10/26/f1486f37-1a89-452f-af25-5283134cd2c9/ENCFF285LVE.bam ENCODE3 GRCh38 archived low read length ENCFF389PPS bam bam unfiltered alignments hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000POU/ 1375586057 ENCODE Processing Pipeline 6d63738c93c0f288c72db4cf402942c9 https://www.encodeproject.org/files/ENCFF389PPS/@@download/ENCFF389PPS.bam released s3://encode-public/2016/11/13/27c611a2-f369-4921-ba7c-f174d8f8605a/ENCFF389PPS.bam ENCODE3 hg19 archived low read length ENCFF346RZT bam bam alignments hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000POU/ 932350551 ENCODE Processing Pipeline 48e7b6d727d0a0a8e404e9c7314ab0b3 https://www.encodeproject.org/files/ENCFF346RZT/@@download/ENCFF346RZT.bam released s3://encode-public/2016/11/13/d1c8565b-f42c-44ab-956e-99a811cd3148/ENCFF346RZT.bam ENCODE3 hg19 archived low read length ENCFF509IKM bam bam unfiltered alignments hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000POV/ 1492453779 ENCODE Processing Pipeline 4bdc26f8e46f2bcea5d78ee901cfbfc9 https://www.encodeproject.org/files/ENCFF509IKM/@@download/ENCFF509IKM.bam released s3://encode-public/2016/11/13/386eeb11-a729-42ca-8728-2a43df29756c/ENCFF509IKM.bam ENCODE3 hg19 archived low read length ENCFF382BNF bam bam alignments hg19 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000POV/ 1053386752 ENCODE Processing Pipeline 808441ea4bef7ee4c9a09f8ccf5bdbd0 https://www.encodeproject.org/files/ENCFF382BNF/@@download/ENCFF382BNF.bam released s3://encode-public/2016/11/13/f37bb656-fd99-4ba4-8c88-c94533d33a59/ENCFF382BNF.bam ENCODE3 hg19 archived low read length ENCFF989LLB bam bam unfiltered alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000POV/ 1460084527 ENCODE Processing Pipeline e57144de9a962906b9d1c9e7cca92413 https://www.encodeproject.org/files/ENCFF989LLB/@@download/ENCFF989LLB.bam released s3://encode-public/2020/09/03/9da6fff3-6add-451f-8c82-f7e4fbabc64a/ENCFF989LLB.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF285GKD bam bam alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000POU/ 1022777221 ENCODE Processing Pipeline ff39a021a3942901d2306d060a667848 https://www.encodeproject.org/files/ENCFF285GKD/@@download/ENCFF285GKD.bam released s3://encode-public/2020/09/03/950626e0-e27a-4d06-abe3-60f9938eec82/ENCFF285GKD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF459YUC bam bam alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000POV/ 1144028134 ENCODE Processing Pipeline 1a987c5c9bbf874c98057afa1e3e60a5 https://www.encodeproject.org/files/ENCFF459YUC/@@download/ENCFF459YUC.bam released s3://encode-public/2020/09/03/d11289a3-4d30-4480-9ad7-c9ee127e41c1/ENCFF459YUC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF346OUR bam bam unfiltered alignments GRCh38 ENCSR000BLG Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000POU/ 1342248808 ENCODE Processing Pipeline d5a8743f180f057b0fd11a8094d18abc https://www.encodeproject.org/files/ENCFF346OUR/@@download/ENCFF346OUR.bam released s3://encode-public/2020/09/03/b9de3121-c248-476f-a725-4111b1b7dfe1/ENCFF346OUR.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF630MAR bam bam unfiltered alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF679ROW/, /files/ENCFF110MCL/, /files/ENCFF812QHL/, /files/ENCFF371GRL/, /files/ENCFF033TIJ/ 7391850800 ENCODE Processing Pipeline b692ae7d2836456ac67aa83b263e6783 https://www.encodeproject.org/files/ENCFF630MAR/@@download/ENCFF630MAR.bam released s3://encode-public/2020/09/19/96221ab7-99df-47e1-9870-ad4d79163a65/ENCFF630MAR.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF812QHL fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 2264134154 Bradley Bernstein, Broad d5c387d6b097efa6b20f577dfec8d780 SRA:SRR10388818 https://www.encodeproject.org/files/ENCFF812QHL/@@download/ENCFF812QHL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/35dd2ecd-6969-4f06-91c7-34bdc10f0b3e/ENCFF812QHL.fastq.gz inconsistent platforms ENCFF033TIJ fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1 76 single-ended 2210266148 Bradley Bernstein, Broad cc43ee02e92dcfd48e921196d7f9d188 SRA:SRR10388819 https://www.encodeproject.org/files/ENCFF033TIJ/@@download/ENCFF033TIJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/3bb6c5c7-d9a0-482b-915b-7a673c892e7b/ENCFF033TIJ.fastq.gz inconsistent platforms ENCFF679ROW fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_2 76 single-ended 1792856863 Bradley Bernstein, Broad 603b9ae3ad569628591b8d07fa76b9b9 SRA:SRR10388812 https://www.encodeproject.org/files/ENCFF679ROW/@@download/ENCFF679ROW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/7c3c2191-6c28-4766-9f99-3eaec8092e52/ENCFF679ROW.fastq.gz inconsistent platforms ENCFF371GRL fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_2 76 single-ended 1722111365 Bradley Bernstein, Broad 90584799086580c1b8a90790c108821e SRA:SRR10388813 https://www.encodeproject.org/files/ENCFF371GRL/@@download/ENCFF371GRL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/04/27/df2777e5-bb26-4100-9376-b30c3d721afb/ENCFF371GRL.fastq.gz inconsistent platforms ENCFF951YPA bam bam unfiltered alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF033TIJ/, /files/ENCFF812QHL/, /files/ENCFF643CGH/, /files/ENCFF371GRL/, /files/ENCFF679ROW/ 7466395788 ENCODE Processing Pipeline 8a1a68e1e786d7ff6e09074b2c5d33b9 https://www.encodeproject.org/files/ENCFF951YPA/@@download/ENCFF951YPA.bam released s3://encode-public/2019/06/12/fc76a6ca-9813-4299-ade1-a302c11ccdea/ENCFF951YPA.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF750CZQ bam bam alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF033TIJ/, /files/ENCFF812QHL/, /files/ENCFF643CGH/, /files/ENCFF371GRL/, /files/ENCFF679ROW/ 6125567995 ENCODE Processing Pipeline b5c16de55fdf5723848e1cd1214374f9 https://www.encodeproject.org/files/ENCFF750CZQ/@@download/ENCFF750CZQ.bam released s3://encode-public/2019/06/12/d3ca8eb5-8123-47c3-b22d-a133204769a8/ENCFF750CZQ.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF090EAV fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_2 76 single-ended 368901111 Bradley Bernstein, Broad ae87c9934acc1b921347f263eb3a7df7 SRA:SRR10388814 https://www.encodeproject.org/files/ENCFF090EAV/@@download/ENCFF090EAV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/02fa2ffa-c894-4629-beb5-c14f1323f855/ENCFF090EAV.fastq.gz inconsistent platforms ENCFF626DBF fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_2 76 single-ended 365914585 Bradley Bernstein, Broad b0baea922797c6cf87a143d08b65e97d SRA:SRR10388815 https://www.encodeproject.org/files/ENCFF626DBF/@@download/ENCFF626DBF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/de1ecace-1a51-4664-b0af-b418425418da/ENCFF626DBF.fastq.gz inconsistent platforms ENCFF009YOX bam bam unfiltered alignments hg19 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF033TIJ/, /files/ENCFF812QHL/, /files/ENCFF807MUK/, /files/ENCFF371GRL/, /files/ENCFF679ROW/ 7448156814 ENCODE Processing Pipeline 4961655f7b4ad68a07a98ba86473317d https://www.encodeproject.org/files/ENCFF009YOX/@@download/ENCFF009YOX.bam released s3://encode-public/2019/06/19/929705dc-07e8-44b9-9733-537ed95bcca5/ENCFF009YOX.bam ENCODE3 hg19 archived inconsistent platforms ENCFF834FOA bam bam alignments hg19 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF033TIJ/, /files/ENCFF812QHL/, /files/ENCFF807MUK/, /files/ENCFF371GRL/, /files/ENCFF679ROW/ 6116184395 ENCODE Processing Pipeline cbd1cca11bc108c46928022da9e4ed6d https://www.encodeproject.org/files/ENCFF834FOA/@@download/ENCFF834FOA.bam released s3://encode-public/2019/06/19/64558fcd-0c69-4875-a35b-f88c477b83b9/ENCFF834FOA.bam ENCODE3 hg19 archived inconsistent platforms ENCFF896VRV fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1 76 single-ended 346725169 Bradley Bernstein, Broad cea116b2edf7029eaee561603be3f9e6 SRA:SRR10388820 https://www.encodeproject.org/files/ENCFF896VRV/@@download/ENCFF896VRV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/24c7a2c2-0629-4a66-9149-bc166b9b1ef5/ENCFF896VRV.fastq.gz inconsistent platforms ENCFF225DAF fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1 76 single-ended 355738093 Bradley Bernstein, Broad 99d9cdf1716b5c2dc7d982946e85a8e3 SRA:SRR10388821 https://www.encodeproject.org/files/ENCFF225DAF/@@download/ENCFF225DAF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/b7398c06-9d85-40e3-aded-8780787af7b3/ENCFF225DAF.fastq.gz inconsistent platforms ENCFF324AZQ fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1 76 single-ended 350536570 Bradley Bernstein, Broad 0f7854cb317fd138ee0b686d1c3c0115 SRA:SRR10388822 https://www.encodeproject.org/files/ENCFF324AZQ/@@download/ENCFF324AZQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/f07068e9-4e1f-4417-8e51-cdf63b8692b0/ENCFF324AZQ.fastq.gz inconsistent platforms ENCFF109NNP fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1 76 single-ended 347680746 Bradley Bernstein, Broad 7a0fa3a963b1bea6aeca2a0603eb1ae3 SRA:SRR10388823 https://www.encodeproject.org/files/ENCFF109NNP/@@download/ENCFF109NNP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/07/29/be1bcfac-50b6-4efd-8380-0d5600af1680/ENCFF109NNP.fastq.gz inconsistent platforms ENCFF606IGL bam bam unfiltered alignments hg19 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF896VRV/, /files/ENCFF225DAF/, /files/ENCFF324AZQ/, /files/ENCFF807MUK/, /files/ENCFF451KIP/, /files/ENCFF090EAV/, /files/ENCFF690RYN/, /files/ENCFF626DBF/, /files/ENCFF109NNP/ 2873075830 ENCODE Processing Pipeline 45f4c786eb165b86112f7a412949f970 https://www.encodeproject.org/files/ENCFF606IGL/@@download/ENCFF606IGL.bam released s3://encode-public/2019/08/30/4d047a3b-6dd3-43a6-a2f5-fa2d4173529e/ENCFF606IGL.bam ENCODE3 hg19 archived inconsistent platforms ENCFF736XPB bam bam unfiltered alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF896VRV/, /files/ENCFF643CGH/, /files/ENCFF225DAF/, /files/ENCFF324AZQ/, /files/ENCFF451KIP/, /files/ENCFF090EAV/, /files/ENCFF690RYN/, /files/ENCFF626DBF/, /files/ENCFF109NNP/ 2883948308 ENCODE Processing Pipeline 809b322db9c1a68339126ac9a942241a https://www.encodeproject.org/files/ENCFF736XPB/@@download/ENCFF736XPB.bam released s3://encode-public/2019/08/30/6539241c-03e0-435b-bf6b-d5f6d13a9270/ENCFF736XPB.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF259YCY bam bam alignments hg19 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF896VRV/, /files/ENCFF225DAF/, /files/ENCFF324AZQ/, /files/ENCFF807MUK/, /files/ENCFF451KIP/, /files/ENCFF090EAV/, /files/ENCFF690RYN/, /files/ENCFF626DBF/, /files/ENCFF109NNP/ 2363685063 ENCODE Processing Pipeline 84bf7bac632689b1e6c97fbc43e13bf0 https://www.encodeproject.org/files/ENCFF259YCY/@@download/ENCFF259YCY.bam released s3://encode-public/2019/08/30/2a181853-1c81-48dc-8193-9c001f0c8339/ENCFF259YCY.bam ENCODE3 hg19 archived inconsistent platforms ENCFF123TAC bam bam alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF896VRV/, /files/ENCFF643CGH/, /files/ENCFF225DAF/, /files/ENCFF324AZQ/, /files/ENCFF451KIP/, /files/ENCFF090EAV/, /files/ENCFF690RYN/, /files/ENCFF626DBF/, /files/ENCFF109NNP/ 2366956567 ENCODE Processing Pipeline cc6ca09804a77ac2ce0583b0683f378d https://www.encodeproject.org/files/ENCFF123TAC/@@download/ENCFF123TAC.bam released s3://encode-public/2019/08/30/bb3be3cf-e44e-4923-a9f9-2f183921a65e/ENCFF123TAC.bam ENCODE3 GRCh38 archived inconsistent platforms ENCFF451KIP fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_2 76 single-ended 344869832 Bradley Bernstein, Broad 9c5100f5ea337259085c7ea3e35c957c SRA:SRR10388816 https://www.encodeproject.org/files/ENCFF451KIP/@@download/ENCFF451KIP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/f8683a6f-fb57-4689-9bd7-beb9cbe5638a/ENCFF451KIP.fastq.gz inconsistent platforms ENCFF690RYN fastq fastq reads ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_2 76 single-ended 359992729 Bradley Bernstein, Broad 592d54e974624d330913ee529cc47cc0 SRA:SRR10388817 https://www.encodeproject.org/files/ENCFF690RYN/@@download/ENCFF690RYN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2019/08/14/03530556-ffaf-42e4-b2e0-6da9adc176cd/ENCFF690RYN.fastq.gz inconsistent platforms ENCFF014HED bam bam unfiltered alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF324AZQ/, /files/ENCFF626DBF/, /files/ENCFF896VRV/, /files/ENCFF090EAV/, /files/ENCFF225DAF/, /files/ENCFF110MCL/, /files/ENCFF690RYN/, /files/ENCFF109NNP/, /files/ENCFF451KIP/ 2862057963 ENCODE Processing Pipeline 0659c57fb1064647a3158d3920597c26 https://www.encodeproject.org/files/ENCFF014HED/@@download/ENCFF014HED.bam released s3://encode-public/2020/09/19/feb9553e-f3e1-4b21-8c64-2ffd7f9d95fc/ENCFF014HED.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF921FHW bam bam alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF679ROW/, /files/ENCFF110MCL/, /files/ENCFF812QHL/, /files/ENCFF371GRL/, /files/ENCFF033TIJ/ 6082194326 ENCODE Processing Pipeline 0bb44d86f00d41d8c8c49e6914825564 https://www.encodeproject.org/files/ENCFF921FHW/@@download/ENCFF921FHW.bam released s3://encode-public/2020/09/19/30bfa13c-4691-4316-9ec1-9df432240437/ENCFF921FHW.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF125VUN bam bam alignments GRCh38 ENCSR889RIF Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0002106 spleen tissue Homo sapiens DNA 2019-07-19 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF324AZQ/, /files/ENCFF626DBF/, /files/ENCFF896VRV/, /files/ENCFF090EAV/, /files/ENCFF225DAF/, /files/ENCFF110MCL/, /files/ENCFF690RYN/, /files/ENCFF109NNP/, /files/ENCFF451KIP/ 2351892681 ENCODE Processing Pipeline c600736551b9d561983c69f4afa9b213 https://www.encodeproject.org/files/ENCFF125VUN/@@download/ENCFF125VUN.bam released s3://encode-public/2020/09/19/29f06801-6640-45fa-ae19-59c58372a058/ENCFF125VUN.bam ENCODE4 v1.5.1 GRCh38 released inconsistent platforms ENCFF134WUV bam bam redacted unfiltered alignments GRCh38 ENCSR461UOU Control ChIP-seq /human-donors/ENCDO865QOI/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF436DLD/, /files/ENCFF643CGH/ 388428151 ENCODE Processing Pipeline 44787f441d9e3ac5c0d223e7c35e4238 https://www.encodeproject.org/files/ENCFF134WUV/@@download/ENCFF134WUV.bam released s3://encode-public/2017/11/09/fc08e41f-b502-427d-87f4-b2660fcabb96/ENCFF134WUV.bam ENCODE3 GRCh38 archived ENCFF291ITK bam bam redacted alignments GRCh38 ENCSR461UOU Control ChIP-seq /human-donors/ENCDO865QOI/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF436DLD/, /files/ENCFF643CGH/ 278640120 ENCODE Processing Pipeline 5348e8804ca96d2dfc0bf7da4bbc8578 https://www.encodeproject.org/files/ENCFF291ITK/@@download/ENCFF291ITK.bam released s3://encode-public/2017/11/09/7ede470f-bab6-451e-a364-830cb8afbf0f/ENCFF291ITK.bam ENCODE3 GRCh38 archived ENCFF901LJD bam bam redacted unfiltered alignments hg19 ENCSR461UOU Control ChIP-seq /human-donors/ENCDO865QOI/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF436DLD/, /files/ENCFF807MUK/ 379779627 ENCODE Processing Pipeline 47e3cbb50aa13f92241b4a2e404f0b99 https://www.encodeproject.org/files/ENCFF901LJD/@@download/ENCFF901LJD.bam released s3://encode-public/2018/01/20/7c95d0eb-525e-4639-a0cc-944655a95c59/ENCFF901LJD.bam ENCODE3 hg19 archived ENCFF396RMO bam bam redacted alignments hg19 ENCSR461UOU Control ChIP-seq /human-donors/ENCDO865QOI/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF436DLD/, /files/ENCFF807MUK/ 278057591 ENCODE Processing Pipeline 29f49b2e44b98e50a38b1fb17e4f4e59 https://www.encodeproject.org/files/ENCFF396RMO/@@download/ENCFF396RMO.bam released s3://encode-public/2018/01/20/9e56f11c-5c83-49ae-8eff-1b760215b38a/ENCFF396RMO.bam ENCODE3 hg19 archived ENCFF035HMN bam bam redacted alignments GRCh38 ENCSR461UOU Control ChIP-seq /human-donors/ENCDO865QOI/ UBERON:0000088 trophoblast tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF208TZP/, /files/ENCFF110MCL/ 1745042387 ENCODE Processing Pipeline 47b21c43868e3d14e94ccce675d27d66 https://www.encodeproject.org/files/ENCFF035HMN/@@download/ENCFF035HMN.bam released s3://encode-public/2021/01/28/3da1e6cf-605d-4d8d-b195-ec2e85a3c5c8/ENCFF035HMN.bam ENCODE4 v1.7.0 GRCh38 released ENCFF115JEY bam bam unfiltered alignments hg19 ENCSR571CEX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF536LRX/ 3068970552 ENCODE Processing Pipeline 02d0207556df4748f1e08d75e6d869ab https://www.encodeproject.org/files/ENCFF115JEY/@@download/ENCFF115JEY.bam released s3://encode-public/2018/02/21/0eaa36f7-e6bf-43b9-8866-a2628fc24adb/ENCFF115JEY.bam ENCODE3 hg19 archived ENCFF536LRX fastq fastq reads ENCSR571CEX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 single-ended 3006387265 Richard Myers, HAIB 39e65f2121dc8a0d2df4ab42b17135d7 SRA:SRR5338980 https://www.encodeproject.org/files/ENCFF536LRX/@@download/ENCFF536LRX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/18/3e66419e-fd0e-4aa5-8ef5-2005f6a51b11/ENCFF536LRX.fastq.gz ENCFF082GBO bam bam alignments hg19 ENCSR571CEX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF536LRX/ 2088171948 ENCODE Processing Pipeline 406e5f2e0f91799bb6e84d1c3418ae76 https://www.encodeproject.org/files/ENCFF082GBO/@@download/ENCFF082GBO.bam released s3://encode-public/2015/11/17/53e4836b-bb40-4e08-aa40-fc6a8212c10f/ENCFF082GBO.bam ENCODE3 hg19 archived ENCFF996WHT bam bam unfiltered alignments GRCh38 ENCSR571CEX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF536LRX/ 3074104039 ENCODE Processing Pipeline fe2b8159aa99b72d32976d3539759679 https://www.encodeproject.org/files/ENCFF996WHT/@@download/ENCFF996WHT.bam released s3://encode-public/2016/05/06/e162e849-61bb-4013-ae8b-27b4090604b0/ENCFF996WHT.bam ENCODE3 GRCh38 archived ENCFF968UFH bam bam alignments GRCh38 ENCSR571CEX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF536LRX/ 2087668751 ENCODE Processing Pipeline 1c72e1e2c21af24fe8c73ff7df42c992 https://www.encodeproject.org/files/ENCFF968UFH/@@download/ENCFF968UFH.bam released s3://encode-public/2016/05/06/ae14a0a7-bef1-4399-abd4-742a0bf69cd9/ENCFF968UFH.bam ENCODE3 GRCh38 archived ENCFF925ZXC bam bam alignments GRCh38 ENCSR571CEX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF536LRX/ 2225914574 ENCODE Processing Pipeline 3c1bba3b6515b0ce0d5e0451d6d2dbfa https://www.encodeproject.org/files/ENCFF925ZXC/@@download/ENCFF925ZXC.bam released s3://encode-public/2020/11/05/7a9b4039-698c-45fd-8885-cd4c50a2608d/ENCFF925ZXC.bam ENCODE4 v1.6.1 GRCh38 released ENCFF048COF bam bam unfiltered alignments GRCh38 ENCSR571CEX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF110MCL/, /files/ENCFF536LRX/ 3052173761 ENCODE Processing Pipeline 556044ca075a8135de6b984e3f7da910 https://www.encodeproject.org/files/ENCFF048COF/@@download/ENCFF048COF.bam released s3://encode-public/2020/11/05/29d09f47-4483-4998-a192-85f5973fc1f3/ENCFF048COF.bam ENCODE4 v1.6.1 GRCh38 released ENCFF435UGQ fastq fastq reads ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF434FCG/ 1408228842 Richard Myers, HAIB 332bcf2b3a922055eb1d8d1354a451ed SRA:SRR8660003 https://www.encodeproject.org/files/ENCFF435UGQ/@@download/ENCFF435UGQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/f74e85db-700b-48f3-90b3-18f20ab353a5/ENCFF435UGQ.fastq.gz ENCFF434FCG fastq fastq reads ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF435UGQ/ 1445949305 Richard Myers, HAIB acc2d91daafca187c81f2fb023f59973 SRA:SRR8660003 https://www.encodeproject.org/files/ENCFF434FCG/@@download/ENCFF434FCG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/dac58b6d-4d4b-4431-a004-2a0a19acf723/ENCFF434FCG.fastq.gz ENCFF961IAN bam bam unfiltered alignments hg19 ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF434FCG/, /files/ENCFF435UGQ/ 3382494643 ENCODE Processing Pipeline 3f58f04430d2b766177c21fc7b5d29ef https://www.encodeproject.org/files/ENCFF961IAN/@@download/ENCFF961IAN.bam released s3://encode-public/2017/02/02/7208d462-3e51-4412-8528-ff6f384267e6/ENCFF961IAN.bam ENCODE3 hg19 archived ENCFF063RMC bam bam unfiltered alignments GRCh38 ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF434FCG/, /files/ENCFF435UGQ/ 3394252353 ENCODE Processing Pipeline 2c8a93953b110b4dbbbaf73f1e4077ea https://www.encodeproject.org/files/ENCFF063RMC/@@download/ENCFF063RMC.bam released s3://encode-public/2017/02/02/a7588636-4837-4b10-b54a-9fc6dde30a68/ENCFF063RMC.bam ENCODE3 GRCh38 archived ENCFF095SYO bam bam alignments hg19 ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF434FCG/, /files/ENCFF435UGQ/ 2381251160 ENCODE Processing Pipeline 6f42010660dbb7454d64d846745e84ea https://www.encodeproject.org/files/ENCFF095SYO/@@download/ENCFF095SYO.bam released s3://encode-public/2017/02/02/000a6194-6983-4df4-91e6-e52ef62950a0/ENCFF095SYO.bam ENCODE3 hg19 archived ENCFF125PRC bam bam alignments GRCh38 ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF434FCG/, /files/ENCFF435UGQ/ 2383882553 ENCODE Processing Pipeline 12435b4702cbf6a6fc14120e1e1c2c91 https://www.encodeproject.org/files/ENCFF125PRC/@@download/ENCFF125PRC.bam released s3://encode-public/2017/02/02/95c7cd56-2f56-406b-af82-7f2373138b4d/ENCFF125PRC.bam ENCODE3 GRCh38 archived ENCFF012ENR bam bam unfiltered alignments GRCh38 ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF435UGQ/, /files/ENCFF434FCG/ 3580899678 ENCODE Processing Pipeline 792dd01653ef5f580917e4f9e2327bd3 https://www.encodeproject.org/files/ENCFF012ENR/@@download/ENCFF012ENR.bam released s3://encode-public/2020/08/06/ffc19450-2d58-4217-968c-0dae7924139b/ENCFF012ENR.bam ENCODE4 GRCh38 released ENCFF590ERU bam bam alignments GRCh38 ENCSR051VGO Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF435UGQ/, /files/ENCFF434FCG/ 2359432451 ENCODE Processing Pipeline d0c6deaaf5324db8541501d6ca07965f https://www.encodeproject.org/files/ENCFF590ERU/@@download/ENCFF590ERU.bam released s3://encode-public/2020/08/06/28edef75-ddaf-4e4b-a994-ac754da27943/ENCFF590ERU.bam ENCODE4 GRCh38 released ENCFF960RVH fastq fastq reads ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF291HPC/ 2979099619 Michael Snyder, Stanford 89b6d0d50566358c3e54f2caf2209fa0 SRA:SRR6212937 https://www.encodeproject.org/files/ENCFF960RVH/@@download/ENCFF960RVH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/4ee9be33-c92c-4f33-a18e-60cca908a97e/ENCFF960RVH.fastq.gz mild to moderate bottlenecking ENCFF291HPC fastq fastq reads ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF960RVH/ 3251507735 Michael Snyder, Stanford 2a0a05e5103741d89b961543581e7cca SRA:SRR6212937 https://www.encodeproject.org/files/ENCFF291HPC/@@download/ENCFF291HPC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/26/7209367d-6a19-4ce9-82a8-450df4304df5/ENCFF291HPC.fastq.gz mild to moderate bottlenecking ENCFF291DHG bam bam unfiltered alignments GRCh38 ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF291HPC/, /files/ENCFF643CGH/, /files/ENCFF960RVH/ 6002599857 ENCODE Processing Pipeline bd847d887003a1b32c8340f17c7d99c9 https://www.encodeproject.org/files/ENCFF291DHG/@@download/ENCFF291DHG.bam released s3://encode-public/2017/01/27/d28b0c51-104d-4576-b9df-d25dbcc8bdc4/ENCFF291DHG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF104DRW bam bam alignments GRCh38 ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF291HPC/, /files/ENCFF643CGH/, /files/ENCFF960RVH/ 4585157516 ENCODE Processing Pipeline ad0144ae14a281c65acf2e0e10b97844 https://www.encodeproject.org/files/ENCFF104DRW/@@download/ENCFF104DRW.bam released s3://encode-public/2017/01/27/1f033ca8-a2be-4dac-a258-dc4f69573aa4/ENCFF104DRW.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF198ROJ bam bam unfiltered alignments hg19 ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF291HPC/, /files/ENCFF807MUK/, /files/ENCFF960RVH/ 5992262607 ENCODE Processing Pipeline 73c255344cec89f87d2fd360030e2807 https://www.encodeproject.org/files/ENCFF198ROJ/@@download/ENCFF198ROJ.bam released s3://encode-public/2017/01/28/ee64d549-2e47-4391-acdf-a76424050235/ENCFF198ROJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF062SIS bam bam alignments hg19 ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 101 /files/ENCFF291HPC/, /files/ENCFF807MUK/, /files/ENCFF960RVH/ 4574804552 ENCODE Processing Pipeline 93d06e9cbf8e27049d0f908f5ce06eab https://www.encodeproject.org/files/ENCFF062SIS/@@download/ENCFF062SIS.bam released s3://encode-public/2017/01/28/b6d391f4-b7ce-482c-a2bb-5909afd032d6/ENCFF062SIS.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF230KLI bam bam unfiltered alignments GRCh38 ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF960RVH/, /files/ENCFF291HPC/ 6000523145 ENCODE Processing Pipeline 149fd3cdcd2d96b2c23a3567375d1109 https://www.encodeproject.org/files/ENCFF230KLI/@@download/ENCFF230KLI.bam released s3://encode-public/2020/06/03/2e75590f-7bd3-4cbd-9573-752ec41a999d/ENCFF230KLI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF625DNX bam bam alignments GRCh38 ENCSR013JVJ Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0010414 omental fat pad tissue Homo sapiens DNA 2017-01-30 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF960RVH/, /files/ENCFF291HPC/ 4473322050 ENCODE Processing Pipeline cccb186e2956c487effd685c44214a9d https://www.encodeproject.org/files/ENCFF625DNX/@@download/ENCFF625DNX.bam released s3://encode-public/2020/06/03/d836bbc3-8fa9-46fc-ab8d-8aeb6f0d93d2/ENCFF625DNX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF949BQT fastq fastq reads ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF217QQZ/ 5004733408 Richard Myers, HAIB f070e39ab063c9e87c68692499d156ee SRA:SRR8659950 https://www.encodeproject.org/files/ENCFF949BQT/@@download/ENCFF949BQT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/13af48ca-d3bc-4aec-aeb4-97b6016ff175/ENCFF949BQT.fastq.gz ENCFF217QQZ fastq fastq reads ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF949BQT/ 5261796980 Richard Myers, HAIB 1b3955f417f3c2104389b848d5ec47a2 SRA:SRR8659950 https://www.encodeproject.org/files/ENCFF217QQZ/@@download/ENCFF217QQZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/2784ec1d-6086-4117-858d-4c0dc58cc2bb/ENCFF217QQZ.fastq.gz ENCFF950XMH bam bam unfiltered alignments hg19 ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF217QQZ/, /files/ENCFF949BQT/, /files/ENCFF807MUK/ 11623411478 ENCODE Processing Pipeline e45b3c41715958444af8ebe28a2e2882 https://www.encodeproject.org/files/ENCFF950XMH/@@download/ENCFF950XMH.bam released s3://encode-public/2017/02/02/8012551a-2b78-4e07-905a-59834813286d/ENCFF950XMH.bam ENCODE3 hg19 archived ENCFF003VUV bam bam alignments hg19 ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF217QQZ/, /files/ENCFF949BQT/, /files/ENCFF807MUK/ 7276249525 ENCODE Processing Pipeline bf035e6266f7d9baeeee9d51ed795d37 https://www.encodeproject.org/files/ENCFF003VUV/@@download/ENCFF003VUV.bam released s3://encode-public/2017/02/02/53994d47-0a83-4167-beca-d02b82d70ab3/ENCFF003VUV.bam ENCODE3 hg19 archived ENCFF614QJD bam bam unfiltered alignments GRCh38 ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF217QQZ/, /files/ENCFF949BQT/, /files/ENCFF643CGH/ 11670525529 ENCODE Processing Pipeline 6a2f5b9ad72ef14e0abdb2ce6836b617 https://www.encodeproject.org/files/ENCFF614QJD/@@download/ENCFF614QJD.bam released s3://encode-public/2017/02/02/e6249696-288d-4a4b-b304-25972b0b9724/ENCFF614QJD.bam ENCODE3 GRCh38 archived ENCFF572OLC bam bam alignments GRCh38 ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF217QQZ/, /files/ENCFF949BQT/, /files/ENCFF643CGH/ 7287611179 ENCODE Processing Pipeline 844a5ed00492def344a46313f373b7ca https://www.encodeproject.org/files/ENCFF572OLC/@@download/ENCFF572OLC.bam released s3://encode-public/2017/02/02/499816cb-66a2-4833-8f88-5441832834e2/ENCFF572OLC.bam ENCODE3 GRCh38 archived ENCFF850NYC bam bam unfiltered alignments GRCh38 ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF949BQT/, /files/ENCFF217QQZ/ 11906233364 ENCODE Processing Pipeline 7046ff9430a76caa65df333b500535c1 https://www.encodeproject.org/files/ENCFF850NYC/@@download/ENCFF850NYC.bam released s3://encode-public/2020/06/06/b36d080a-c7b2-4997-ad8b-f0933fc02148/ENCFF850NYC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF892AXZ bam bam alignments GRCh38 ENCSR011LTA Control ChIP-seq /human-donors/ENCDO845WKR/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF949BQT/, /files/ENCFF217QQZ/ 6868408560 ENCODE Processing Pipeline 8e2b46f8b506b71b300afd46b7ca1fb3 https://www.encodeproject.org/files/ENCFF892AXZ/@@download/ENCFF892AXZ.bam released s3://encode-public/2020/06/06/03ec477f-242d-4342-845a-d91d2dc26452/ENCFF892AXZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF641NJK bigWig bigWig read-depth normalized signal dm6 ENCSR250MXW Control ChIP-seq /fly-donors/ENCDO638SFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39935/'], '@type': ['Target', 'Item'], 'name': 'tap-dmelanogaster', 'label': 'tap', '@id': '/targets/tap-dmelanogaster/', 'title': 'tap (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '5eb6795c-c3f3-4b2b-854d-e01e55678d3e', 'status': 'released'} dm3 3L 17350304 17371996 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF015DDB/ 17732497 Kevin White, UChicago 13c40c5f2e371175034f91d4dd62dccd https://www.encodeproject.org/files/ENCFF641NJK/@@download/ENCFF641NJK.bigWig released s3://encode-public/2019/06/18/dc73cc97-dc78-4ef8-914c-5518273668e4/ENCFF641NJK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF359YTX fastq fastq reads ENCSR250MXW Control ChIP-seq /fly-donors/ENCDO638SFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39935/'], '@type': ['Target', 'Item'], 'name': 'tap-dmelanogaster', 'label': 'tap', '@id': '/targets/tap-dmelanogaster/', 'title': 'tap (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '5eb6795c-c3f3-4b2b-854d-e01e55678d3e', 'status': 'released'} dm3 3L 17350304 17371996 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 1281469266 Kevin White, UChicago 026843c15f3e5f42bac739c816527997 https://www.encodeproject.org/files/ENCFF359YTX/@@download/ENCFF359YTX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/b717f7b7-96e0-4991-940e-aebda2af1001/ENCFF359YTX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF015DDB bam bam alignments dm6 ENCSR250MXW Control ChIP-seq /fly-donors/ENCDO638SFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39935/'], '@type': ['Target', 'Item'], 'name': 'tap-dmelanogaster', 'label': 'tap', '@id': '/targets/tap-dmelanogaster/', 'title': 'tap (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '5eb6795c-c3f3-4b2b-854d-e01e55678d3e', 'status': 'released'} dm3 3L 17350304 17371996 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF359YTX/, /files/ENCFF479RCH/ 1705577608 Kevin White, UChicago 83f536828d06ed45796e335bfabd6917 https://www.encodeproject.org/files/ENCFF015DDB/@@download/ENCFF015DDB.bam released s3://encode-public/2019/06/18/332b1e8c-2de8-4c6b-825d-f33f987119d2/ENCFF015DDB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF700GRM bigWig bigWig signal of unique reads dm6 ENCSR250MXW Control ChIP-seq /fly-donors/ENCDO638SFE/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39935/'], '@type': ['Target', 'Item'], 'name': 'tap-dmelanogaster', 'label': 'tap', '@id': '/targets/tap-dmelanogaster/', 'title': 'tap (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '5eb6795c-c3f3-4b2b-854d-e01e55678d3e', 'status': 'released'} dm3 3L 17350304 17371996 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF015DDB/ 17797825 Kevin White, UChicago b94bfd6a381cd00813b14d8bd0c5a1fe https://www.encodeproject.org/files/ENCFF700GRM/@@download/ENCFF700GRM.bigWig released s3://encode-public/2019/06/18/00f3ff1b-b298-464f-b2a9-152417485b5a/ENCFF700GRM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF194FDX fastq fastq reads ENCSR863VLO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7727/'], '@type': ['Target', 'Item'], 'name': 'ZNF174-human', 'label': 'ZNF174', '@id': '/targets/ZNF174-human/', 'title': 'ZNF174 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '34074c6d-7a31-4a04-bcba-e7bd4847d0a6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF625ODB/ 2875993324 Michael Snyder, Stanford d635ba5e50bbecdc0f218ca8249728c3 SRA:SRR14104509 https://www.encodeproject.org/files/ENCFF194FDX/@@download/ENCFF194FDX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/50b8b63c-6ecc-4819-8a7f-48f1d7807583/ENCFF194FDX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF625ODB fastq fastq reads ENCSR863VLO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7727/'], '@type': ['Target', 'Item'], 'name': 'ZNF174-human', 'label': 'ZNF174', '@id': '/targets/ZNF174-human/', 'title': 'ZNF174 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '34074c6d-7a31-4a04-bcba-e7bd4847d0a6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF194FDX/ 2708692601 Michael Snyder, Stanford 69df7e90f3b93d614cf58206c237d3cf SRA:SRR14104509 https://www.encodeproject.org/files/ENCFF625ODB/@@download/ENCFF625ODB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/c963c197-da41-41b5-ac7a-77ab42bdabd2/ENCFF625ODB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF035LAL bam bam alignments GRCh38 ENCSR863VLO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7727/'], '@type': ['Target', 'Item'], 'name': 'ZNF174-human', 'label': 'ZNF174', '@id': '/targets/ZNF174-human/', 'title': 'ZNF174 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '34074c6d-7a31-4a04-bcba-e7bd4847d0a6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF625ODB/, /files/ENCFF194FDX/ 3345379928 ENCODE Processing Pipeline 1a9a7f02c3da44e86d9d29c3da21d129 https://www.encodeproject.org/files/ENCFF035LAL/@@download/ENCFF035LAL.bam released s3://encode-public/2020/05/15/a4a79643-2c91-431a-a094-d0288dc9d2f3/ENCFF035LAL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF450CAA bam bam unfiltered alignments GRCh38 ENCSR863VLO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7727/'], '@type': ['Target', 'Item'], 'name': 'ZNF174-human', 'label': 'ZNF174', '@id': '/targets/ZNF174-human/', 'title': 'ZNF174 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '34074c6d-7a31-4a04-bcba-e7bd4847d0a6', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF625ODB/, /files/ENCFF194FDX/ 5093579760 ENCODE Processing Pipeline 0a16f9f310a1d140d2455f7931c5a26d https://www.encodeproject.org/files/ENCFF450CAA/@@download/ENCFF450CAA.bam released s3://encode-public/2020/05/15/f9ef08db-952f-4870-a065-e9ad57237cb6/ENCFF450CAA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF862TTQ fastq fastq reads ENCSR504LIP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-859'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/126295/'], '@type': ['Target', 'Item'], 'name': 'ZNF57-human', 'label': 'ZNF57', '@id': '/targets/ZNF57-human/', 'title': 'ZNF57 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '460e205d-9412-4887-8cfd-a0c0e0545cf5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF140AAL/ 2594736703 Michael Snyder, Stanford 7cebe626f2faad55f9fd94a46c9a0f07 https://www.encodeproject.org/files/ENCFF862TTQ/@@download/ENCFF862TTQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/9a2b862d-6389-4b35-affb-6e68d815b458/ENCFF862TTQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF140AAL fastq fastq reads ENCSR504LIP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-859'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/126295/'], '@type': ['Target', 'Item'], 'name': 'ZNF57-human', 'label': 'ZNF57', '@id': '/targets/ZNF57-human/', 'title': 'ZNF57 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '460e205d-9412-4887-8cfd-a0c0e0545cf5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF862TTQ/ 2420034007 Michael Snyder, Stanford 7e56df5ce0d642c1e0b23985593f10da https://www.encodeproject.org/files/ENCFF140AAL/@@download/ENCFF140AAL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/fe54c4af-509b-47b0-b472-12c3b26453ca/ENCFF140AAL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF402QKZ bam bam unfiltered alignments GRCh38 ENCSR504LIP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-859'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/126295/'], '@type': ['Target', 'Item'], 'name': 'ZNF57-human', 'label': 'ZNF57', '@id': '/targets/ZNF57-human/', 'title': 'ZNF57 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '460e205d-9412-4887-8cfd-a0c0e0545cf5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF140AAL/, /files/ENCFF862TTQ/ 4465266079 ENCODE Processing Pipeline 5820c320bd55fc1a8b28661c3eb2fbd7 https://www.encodeproject.org/files/ENCFF402QKZ/@@download/ENCFF402QKZ.bam released s3://encode-public/2020/04/21/862efdb5-b8a9-404b-b13a-093999587347/ENCFF402QKZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF799UJC bam bam alignments GRCh38 ENCSR504LIP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-859'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/126295/'], '@type': ['Target', 'Item'], 'name': 'ZNF57-human', 'label': 'ZNF57', '@id': '/targets/ZNF57-human/', 'title': 'ZNF57 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '460e205d-9412-4887-8cfd-a0c0e0545cf5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF140AAL/, /files/ENCFF862TTQ/ 2973195231 ENCODE Processing Pipeline 58cfc3b56f98cb668c46cb5ff07651f6 https://www.encodeproject.org/files/ENCFF799UJC/@@download/ENCFF799UJC.bam released s3://encode-public/2020/04/21/4a0d795c-d1d5-4ad2-ae50-2c2d26350fa1/ENCFF799UJC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF793JUD fastq fastq reads ENCSR185VVF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1389'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22835/'], '@type': ['Target', 'Item'], 'name': 'ZFP30-human', 'label': 'ZFP30', '@id': '/targets/ZFP30-human/', 'title': 'ZFP30 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9c06b861-08c0-4ae0-a2bf-f96202352881', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF914FBM/ 3536908800 Michael Snyder, Stanford b8af9f40bfc6da8c97f3cdd6225be7be SRA:SRR14106987 https://www.encodeproject.org/files/ENCFF793JUD/@@download/ENCFF793JUD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/1214fffb-ccc0-49f7-8f5a-419d396e02ea/ENCFF793JUD.fastq.gz mild to moderate bottlenecking ENCFF914FBM fastq fastq reads ENCSR185VVF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1389'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22835/'], '@type': ['Target', 'Item'], 'name': 'ZFP30-human', 'label': 'ZFP30', '@id': '/targets/ZFP30-human/', 'title': 'ZFP30 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9c06b861-08c0-4ae0-a2bf-f96202352881', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF793JUD/ 3371937163 Michael Snyder, Stanford 65f570f360048e44557792cbd0c126bb SRA:SRR14106987 https://www.encodeproject.org/files/ENCFF914FBM/@@download/ENCFF914FBM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/0ddabd2e-6d59-4d35-9ee9-5b87c44392fe/ENCFF914FBM.fastq.gz mild to moderate bottlenecking ENCFF208SNT bam bam unfiltered alignments GRCh38 ENCSR185VVF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1389'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22835/'], '@type': ['Target', 'Item'], 'name': 'ZFP30-human', 'label': 'ZFP30', '@id': '/targets/ZFP30-human/', 'title': 'ZFP30 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9c06b861-08c0-4ae0-a2bf-f96202352881', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF914FBM/, /files/ENCFF793JUD/ 6618440263 ENCODE Processing Pipeline e39cfe411c5d6c341e270fe25b601731 https://www.encodeproject.org/files/ENCFF208SNT/@@download/ENCFF208SNT.bam released s3://encode-public/2020/05/15/bb110e47-8e99-4bf1-97a3-ffb581f63760/ENCFF208SNT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF349FTZ bam bam alignments GRCh38 ENCSR185VVF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1389'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22835/'], '@type': ['Target', 'Item'], 'name': 'ZFP30-human', 'label': 'ZFP30', '@id': '/targets/ZFP30-human/', 'title': 'ZFP30 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9c06b861-08c0-4ae0-a2bf-f96202352881', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF914FBM/, /files/ENCFF793JUD/ 4135386575 ENCODE Processing Pipeline 5277afb6d01f437bf3fdfd226cc56cc6 https://www.encodeproject.org/files/ENCFF349FTZ/@@download/ENCFF349FTZ.bam released s3://encode-public/2020/05/15/9e98e171-7857-4dc1-b22f-2d20554bb0cc/ENCFF349FTZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF379SKH fastq fastq reads ENCSR028NPT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4784/'], '@type': ['Target', 'Item'], 'name': 'NFIX-human', 'label': 'NFIX', '@id': '/targets/NFIX-human/', 'title': 'NFIX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a1a734b0-232d-43ca-9daa-d1fcf63b1cac', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF998HRQ/ 1766135422 Michael Snyder, Stanford 87353b779225d69e776631216d5aedf8 SRA:SRR14103322 https://www.encodeproject.org/files/ENCFF379SKH/@@download/ENCFF379SKH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/6fe66dd3-84db-479f-8477-7414c08da76d/ENCFF379SKH.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF998HRQ fastq fastq reads ENCSR028NPT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4784/'], '@type': ['Target', 'Item'], 'name': 'NFIX-human', 'label': 'NFIX', '@id': '/targets/NFIX-human/', 'title': 'NFIX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a1a734b0-232d-43ca-9daa-d1fcf63b1cac', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF379SKH/ 2067235891 Michael Snyder, Stanford 440ce1b556ef17dcc4cf5231f6aa44b0 SRA:SRR14103322 https://www.encodeproject.org/files/ENCFF998HRQ/@@download/ENCFF998HRQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/fe72e1ea-caa2-4d2b-b48b-8f6daf9667ed/ENCFF998HRQ.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF323PYL bam bam unfiltered alignments GRCh38 ENCSR028NPT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': 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{'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4784/'], '@type': ['Target', 'Item'], 'name': 'NFIX-human', 'label': 'NFIX', '@id': '/targets/NFIX-human/', 'title': 'NFIX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a1a734b0-232d-43ca-9daa-d1fcf63b1cac', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF379SKH/, /files/ENCFF998HRQ/ 2540367712 ENCODE Processing Pipeline a24dbcddff05194ed0e8fcdebb178028 https://www.encodeproject.org/files/ENCFF002FBU/@@download/ENCFF002FBU.bam released s3://encode-public/2020/04/21/2ed02452-3f1d-4c9d-9b0b-b8d35a0b2824/ENCFF002FBU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF193KCW fastq fastq reads ENCSR335HNV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1001'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84307/'], '@type': ['Target', 'Item'], 'name': 'ZNF397-human', 'label': 'ZNF397', '@id': '/targets/ZNF397-human/', 'title': 'ZNF397 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74689db-119d-46b5-ba08-57c46e1f5cce', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF957PUZ/ 2313551812 Michael Snyder, Stanford 5c8f82436165349c8200655256b62ed3 https://www.encodeproject.org/files/ENCFF193KCW/@@download/ENCFF193KCW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/752e47f9-f29e-43cc-a875-660e6614b8c4/ENCFF193KCW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF957PUZ fastq fastq reads ENCSR335HNV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1001'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84307/'], '@type': ['Target', 'Item'], 'name': 'ZNF397-human', 'label': 'ZNF397', '@id': '/targets/ZNF397-human/', 'title': 'ZNF397 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74689db-119d-46b5-ba08-57c46e1f5cce', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF193KCW/ 2637341703 Michael Snyder, Stanford 8991ebc66f7c699a0ae4028add30211c https://www.encodeproject.org/files/ENCFF957PUZ/@@download/ENCFF957PUZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/0f0c16fc-906d-4f35-afdb-2648a4c3e249/ENCFF957PUZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF763XUC bam bam alignments GRCh38 ENCSR335HNV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1001'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84307/'], '@type': ['Target', 'Item'], 'name': 'ZNF397-human', 'label': 'ZNF397', '@id': '/targets/ZNF397-human/', 'title': 'ZNF397 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74689db-119d-46b5-ba08-57c46e1f5cce', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF193KCW/, /files/ENCFF957PUZ/ 2976324331 ENCODE Processing Pipeline ddf18b78b7ebcde716e44a0b242a1c9a https://www.encodeproject.org/files/ENCFF763XUC/@@download/ENCFF763XUC.bam released s3://encode-public/2020/05/15/874e2376-145d-400a-8c6e-4d67ccbde7b2/ENCFF763XUC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF205ILA bam bam unfiltered alignments GRCh38 ENCSR335HNV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1001'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84307/'], '@type': ['Target', 'Item'], 'name': 'ZNF397-human', 'label': 'ZNF397', '@id': '/targets/ZNF397-human/', 'title': 'ZNF397 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f74689db-119d-46b5-ba08-57c46e1f5cce', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF193KCW/, /files/ENCFF957PUZ/ 4369567918 ENCODE Processing Pipeline db89bd51c4d3952f75afbac7ad618418 https://www.encodeproject.org/files/ENCFF205ILA/@@download/ENCFF205ILA.bam released s3://encode-public/2020/05/15/7b1bc504-a999-4bcc-8b0f-78373acfbb0b/ENCFF205ILA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF515TVK fastq fastq reads ENCSR833FPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10732/'], '@type': ['Target', 'Item'], 'name': 'TCFL5-human', 'label': 'TCFL5', '@id': '/targets/TCFL5-human/', 'title': 'TCFL5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6462038c-8767-4f26-ac1b-d7c663b277a4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF778VLX/ 2291702164 Michael Snyder, Stanford c823d5921da0deccbf644814902975c7 SRA:SRR14104216 https://www.encodeproject.org/files/ENCFF515TVK/@@download/ENCFF515TVK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/586a3b4a-8bf2-480e-9322-8c9f7ff42a84/ENCFF515TVK.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF778VLX fastq fastq reads ENCSR833FPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10732/'], '@type': ['Target', 'Item'], 'name': 'TCFL5-human', 'label': 'TCFL5', '@id': '/targets/TCFL5-human/', 'title': 'TCFL5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6462038c-8767-4f26-ac1b-d7c663b277a4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF515TVK/ 2575110468 Michael Snyder, Stanford 887376d92a32468ee01cf5d83204c83f SRA:SRR14104216 https://www.encodeproject.org/files/ENCFF778VLX/@@download/ENCFF778VLX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/d7ea7a24-53c1-44c5-ab86-45d742f07bc8/ENCFF778VLX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF481PND bam bam alignments GRCh38 ENCSR833FPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10732/'], '@type': ['Target', 'Item'], 'name': 'TCFL5-human', 'label': 'TCFL5', '@id': '/targets/TCFL5-human/', 'title': 'TCFL5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6462038c-8767-4f26-ac1b-d7c663b277a4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF515TVK/, /files/ENCFF778VLX/ 2873197826 ENCODE Processing Pipeline 0859d58d0667264eef42bd3868fa64d9 https://www.encodeproject.org/files/ENCFF481PND/@@download/ENCFF481PND.bam released s3://encode-public/2020/05/15/3c6e56d5-4928-4375-ac72-c1cd15b8de0f/ENCFF481PND.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF794PZS bam bam unfiltered alignments GRCh38 ENCSR833FPN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10732/'], '@type': ['Target', 'Item'], 'name': 'TCFL5-human', 'label': 'TCFL5', '@id': '/targets/TCFL5-human/', 'title': 'TCFL5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6462038c-8767-4f26-ac1b-d7c663b277a4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF515TVK/, /files/ENCFF778VLX/ 4270312898 ENCODE Processing Pipeline 80c2a3bc118fc3ded0ab06bf5266243e https://www.encodeproject.org/files/ENCFF794PZS/@@download/ENCFF794PZS.bam released s3://encode-public/2020/05/15/0d981405-508e-4481-ac88-db22ec150d55/ENCFF794PZS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF442XHI fastq fastq reads ENCSR072QAK Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF278MZW/ 3761012280 Michael Snyder, Stanford 7d0aa785feeb97d4f1d4b49db72aed1a SRA:SRR14636861 https://www.encodeproject.org/files/ENCFF442XHI/@@download/ENCFF442XHI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/10/3cc42367-b757-4aff-8d10-eb31969c82e0/ENCFF442XHI.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF278MZW fastq fastq reads ENCSR072QAK Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF442XHI/ 4136588785 Michael Snyder, Stanford 1b6a050291784a25b22e662ebd24b2e7 SRA:SRR14636861 https://www.encodeproject.org/files/ENCFF278MZW/@@download/ENCFF278MZW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/09/10/975e401f-6bb6-4578-8a36-866dbb8979f1/ENCFF278MZW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF220GGJ bam bam unfiltered alignments GRCh38 ENCSR072QAK Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF278MZW/, /files/ENCFF442XHI/ 7749128667 ENCODE Processing Pipeline 3c27955e697016b236aed65d087ec0d1 https://www.encodeproject.org/files/ENCFF220GGJ/@@download/ENCFF220GGJ.bam released s3://encode-public/2020/10/15/e1147668-e961-4ef9-b9c4-283a0b4513ba/ENCFF220GGJ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF733PXB bam bam alignments GRCh38 ENCSR072QAK Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-10-16 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF278MZW/, /files/ENCFF442XHI/ 4961353606 ENCODE Processing Pipeline 10ecbbf439081b939c1c8a230ddfa82c https://www.encodeproject.org/files/ENCFF733PXB/@@download/ENCFF733PXB.bam released s3://encode-public/2020/10/15/13209e14-a2c7-4192-ac0e-eeb43e5bf256/ENCFF733PXB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF038LFI fastq fastq reads ENCSR995TTS Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'dbxrefs': ['FactorBook:ZNF8'], 'aliases': ['michael-snyder:TS-1632'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7554/'], '@type': ['Target', 'Item'], 'label': 'ZNF8', 'title': 'ZNF8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd1afab97-2089-49bd-803e-00272facd8f2', 'schema_version': '14', 'name': 'ZNF8-human', '@id': '/targets/ZNF8-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF434DZU/ 2293354345 Michael Snyder, Stanford 3f062919e3f6da7ed43c5bb12bf63f96 https://www.encodeproject.org/files/ENCFF038LFI/@@download/ENCFF038LFI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/9fe3e257-cd74-4a40-b0b9-f8fda2771a91/ENCFF038LFI.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF434DZU fastq fastq reads ENCSR995TTS Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'dbxrefs': ['FactorBook:ZNF8'], 'aliases': ['michael-snyder:TS-1632'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7554/'], '@type': ['Target', 'Item'], 'label': 'ZNF8', 'title': 'ZNF8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd1afab97-2089-49bd-803e-00272facd8f2', 'schema_version': '14', 'name': 'ZNF8-human', '@id': '/targets/ZNF8-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF038LFI/ 2615872222 Michael Snyder, Stanford 9f35f79b469e5562802567f65500bc2d https://www.encodeproject.org/files/ENCFF434DZU/@@download/ENCFF434DZU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/9bb4c706-4beb-47b1-b445-232e56fc3de8/ENCFF434DZU.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF733GCY bam bam unfiltered alignments GRCh38 ENCSR995TTS Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'dbxrefs': ['FactorBook:ZNF8'], 'aliases': ['michael-snyder:TS-1632'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7554/'], '@type': ['Target', 'Item'], 'label': 'ZNF8', 'title': 'ZNF8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd1afab97-2089-49bd-803e-00272facd8f2', 'schema_version': '14', 'name': 'ZNF8-human', '@id': '/targets/ZNF8-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF038LFI/, /files/ENCFF434DZU/ 4406094438 ENCODE Processing Pipeline a116a44721e2e2a8a35011a738b2618c https://www.encodeproject.org/files/ENCFF733GCY/@@download/ENCFF733GCY.bam released s3://encode-public/2020/04/21/8a6e6ce6-10d4-46b1-a225-422b276dc457/ENCFF733GCY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF958WYJ bam bam alignments GRCh38 ENCSR995TTS Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'dbxrefs': ['FactorBook:ZNF8'], 'aliases': ['michael-snyder:TS-1632'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7554/'], '@type': ['Target', 'Item'], 'label': 'ZNF8', 'title': 'ZNF8 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd1afab97-2089-49bd-803e-00272facd8f2', 'schema_version': '14', 'name': 'ZNF8-human', '@id': '/targets/ZNF8-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF038LFI/, /files/ENCFF434DZU/ 2974648913 ENCODE Processing Pipeline 2bfadde35decb2833ea64ee5a77fba93 https://www.encodeproject.org/files/ENCFF958WYJ/@@download/ENCFF958WYJ.bam released s3://encode-public/2020/04/21/ffe4e422-f0b7-4014-8147-8d86b69feb4f/ENCFF958WYJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity ENCFF499HZO fastq fastq reads ENCSR044HDZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:SRF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6722/'], '@type': ['Target', 'Item'], 'label': 'SRF', 'title': 'SRF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f22f584e-9bfb-4107-88b8-6560bc45efff', 'schema_version': '14', 'name': 'SRF-human', '@id': '/targets/SRF-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF324VSC/ 2758886246 Michael Snyder, Stanford 5fc9e54bfc9f197f5a48f6dd8cfdb8e1 https://www.encodeproject.org/files/ENCFF499HZO/@@download/ENCFF499HZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/4e06c55b-5180-47ff-836e-11bb99e0b44f/ENCFF499HZO.fastq.gz mild to moderate bottlenecking ENCFF324VSC fastq fastq reads ENCSR044HDZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:SRF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6722/'], '@type': ['Target', 'Item'], 'label': 'SRF', 'title': 'SRF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f22f584e-9bfb-4107-88b8-6560bc45efff', 'schema_version': '14', 'name': 'SRF-human', '@id': '/targets/SRF-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF499HZO/ 3203853773 Michael Snyder, Stanford 2828ff698b8cb29c2f325e7802cc1442 https://www.encodeproject.org/files/ENCFF324VSC/@@download/ENCFF324VSC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/3918b3c4-73c6-488d-b31b-af57b3b740d8/ENCFF324VSC.fastq.gz mild to moderate bottlenecking ENCFF281YGG bam bam unfiltered alignments GRCh38 ENCSR044HDZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:SRF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6722/'], '@type': ['Target', 'Item'], 'label': 'SRF', 'title': 'SRF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f22f584e-9bfb-4107-88b8-6560bc45efff', 'schema_version': '14', 'name': 'SRF-human', '@id': '/targets/SRF-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF499HZO/, /files/ENCFF324VSC/ 5745578884 ENCODE Processing Pipeline a8c7afa608b6ce6b9392e0d7d990297d https://www.encodeproject.org/files/ENCFF281YGG/@@download/ENCFF281YGG.bam released s3://encode-public/2020/04/21/eb34bcc9-f627-463f-b6ce-ff217b770686/ENCFF281YGG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF778HVZ bam bam alignments GRCh38 ENCSR044HDZ Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:SRF'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6722/'], '@type': ['Target', 'Item'], 'label': 'SRF', 'title': 'SRF (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f22f584e-9bfb-4107-88b8-6560bc45efff', 'schema_version': '14', 'name': 'SRF-human', '@id': '/targets/SRF-human/', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF499HZO/, /files/ENCFF324VSC/ 4494098482 ENCODE Processing Pipeline 93359005846ecc196816698a3b238a74 https://www.encodeproject.org/files/ENCFF778HVZ/@@download/ENCFF778HVZ.bam released s3://encode-public/2020/04/21/4b6243a0-298a-4e2c-b615-ddee7abc2d54/ENCFF778HVZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF955MVS fastq fastq reads ENCSR405WWL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF689FQB/ 2314039881 Michael Snyder, Stanford 6c8eafa3de73713f96315f256a687075 https://www.encodeproject.org/files/ENCFF955MVS/@@download/ENCFF955MVS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/16/76f8bfc1-9d97-45d0-bf42-68cc7e7b4d94/ENCFF955MVS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF689FQB fastq fastq reads ENCSR405WWL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF955MVS/ 2680691848 Michael Snyder, Stanford cfe7de5c9816bbb31aedc855deaf8cdd https://www.encodeproject.org/files/ENCFF689FQB/@@download/ENCFF689FQB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/16/e932c113-3cf8-443a-90db-168accde33ed/ENCFF689FQB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF814YNM bam bam unfiltered alignments GRCh38 ENCSR405WWL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF955MVS/, /files/ENCFF689FQB/ 4647858378 ENCODE Processing Pipeline b8679a371daaca8ff18557eb6459f228 https://www.encodeproject.org/files/ENCFF814YNM/@@download/ENCFF814YNM.bam released s3://encode-public/2020/04/21/0457f9b4-ba9e-48da-82d6-0e786ce26260/ENCFF814YNM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF992AKS bam bam alignments GRCh38 ENCSR405WWL Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1577'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7709/'], '@type': ['Target', 'Item'], 'name': 'ZBTB17-human', 'label': 'ZBTB17', '@id': '/targets/ZBTB17-human/', 'title': 'ZBTB17 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e86aede1-f151-4dd7-b5a7-ebe79f73db60', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF955MVS/, /files/ENCFF689FQB/ 3377817745 ENCODE Processing Pipeline d65e6161739df268fe9a41acf28beaa9 https://www.encodeproject.org/files/ENCFF992AKS/@@download/ENCFF992AKS.bam released s3://encode-public/2020/04/21/64df3da9-bdba-4ef0-8c71-f6b135491125/ENCFF992AKS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF555CWZ fastq fastq reads ENCSR093QJW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF277VXO/ 2047846844 Michael Snyder, Stanford ef51251cbafa36c0e0f61290874101c8 https://www.encodeproject.org/files/ENCFF555CWZ/@@download/ENCFF555CWZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/de43b1c0-cd89-4c14-8afa-e664156c2654/ENCFF555CWZ.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents ENCFF277VXO fastq fastq reads ENCSR093QJW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF555CWZ/ 2536947434 Michael Snyder, Stanford 468365f9a045f4e533bb848688880b63 https://www.encodeproject.org/files/ENCFF277VXO/@@download/ENCFF277VXO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/a0ee2b44-de20-4543-b9f9-3f66241e5b6b/ENCFF277VXO.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents ENCFF819PMW bam bam alignments GRCh38 ENCSR093QJW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF555CWZ/, /files/ENCFF277VXO/ 3133118256 ENCODE Processing Pipeline 51a92f385274922077dfd1ca61fb2a39 https://www.encodeproject.org/files/ENCFF819PMW/@@download/ENCFF819PMW.bam released s3://encode-public/2020/04/21/f2cc2505-a9a9-4e00-a714-8707e07dbcbd/ENCFF819PMW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents ENCFF904WBE bam bam unfiltered alignments GRCh38 ENCSR093QJW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:RAD21'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5885/'], '@type': ['Target', 'Item'], 'label': 'RAD21', 'title': 'RAD21 (Homo sapiens)', 'investigated_as': ['cohesin'], 'uuid': '909133b9-786c-424e-b081-0fe540bda118', 'schema_version': '14', 'name': 'RAD21-human', '@id': '/targets/RAD21-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF555CWZ/, /files/ENCFF277VXO/ 4451358611 ENCODE Processing Pipeline 9a5e3c978bf9b4f025a8d2c76b551263 https://www.encodeproject.org/files/ENCFF904WBE/@@download/ENCFF904WBE.bam released s3://encode-public/2020/04/21/01804a67-aa82-43a8-8efc-d05ddc7e0482/ENCFF904WBE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents ENCFF893MPZ fastq fastq reads ENCSR333CHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F6'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2063/'], '@type': ['Target', 'Item'], 'label': 'NR2F6', 'title': 'NR2F6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f71561e6-a349-4099-881b-a43e232ed686', 'schema_version': '14', 'name': 'NR2F6-human', '@id': '/targets/NR2F6-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF339QOM/ 2554321900 Michael Snyder, Stanford c8e31d8e2d287baa81c6a1778599990c https://www.encodeproject.org/files/ENCFF893MPZ/@@download/ENCFF893MPZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/357b27f8-e29d-4d3e-a71f-bd1c325d2ea0/ENCFF893MPZ.fastq.gz ENCFF339QOM fastq fastq reads ENCSR333CHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F6'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2063/'], '@type': ['Target', 'Item'], 'label': 'NR2F6', 'title': 'NR2F6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f71561e6-a349-4099-881b-a43e232ed686', 'schema_version': '14', 'name': 'NR2F6-human', '@id': '/targets/NR2F6-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF893MPZ/ 2887107568 Michael Snyder, Stanford 606187f48eed0dec3c0c28374c131036 https://www.encodeproject.org/files/ENCFF339QOM/@@download/ENCFF339QOM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/c9f50350-12e5-4314-a8f2-b1fb1645c13c/ENCFF339QOM.fastq.gz ENCFF210BSP bam bam unfiltered alignments GRCh38 ENCSR333CHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F6'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2063/'], '@type': ['Target', 'Item'], 'label': 'NR2F6', 'title': 'NR2F6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f71561e6-a349-4099-881b-a43e232ed686', 'schema_version': '14', 'name': 'NR2F6-human', '@id': '/targets/NR2F6-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF893MPZ/, /files/ENCFF339QOM/ 5395555387 ENCODE Processing Pipeline ce5c203492a6ae847dba51ddb5a82c89 https://www.encodeproject.org/files/ENCFF210BSP/@@download/ENCFF210BSP.bam released s3://encode-public/2020/04/21/a0c1d40a-6dde-4e26-a51a-c0cb7fd30e27/ENCFF210BSP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF561TLL bam bam alignments GRCh38 ENCSR333CHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:NR2F6'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2063/'], '@type': ['Target', 'Item'], 'label': 'NR2F6', 'title': 'NR2F6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f71561e6-a349-4099-881b-a43e232ed686', 'schema_version': '14', 'name': 'NR2F6-human', '@id': '/targets/NR2F6-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF893MPZ/, /files/ENCFF339QOM/ 4259824845 ENCODE Processing Pipeline f96ef05a565fee2a224b46aa1689bf8d https://www.encodeproject.org/files/ENCFF561TLL/@@download/ENCFF561TLL.bam released s3://encode-public/2020/04/21/c6ac97e1-570c-4c4e-8aca-9e60bf38f39b/ENCFF561TLL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF682ICD fastq fastq reads ENCSR965AWP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3096/'], '@type': ['Target', 'Item'], 'name': 'HIVEP1-human', 'label': 'HIVEP1', '@id': '/targets/HIVEP1-human/', 'title': 'HIVEP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '15b9c8b6-8208-47f4-8177-a37f60655206', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF203QKZ/ 2430366780 Michael Snyder, Stanford 061889ae0978fa3242d42c4e55b040ac SRA:SRR14107457 https://www.encodeproject.org/files/ENCFF682ICD/@@download/ENCFF682ICD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7cefbda0-6770-4174-a542-781581bbad49/ENCFF682ICD.fastq.gz mild to moderate bottlenecking ENCFF203QKZ fastq fastq reads ENCSR965AWP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3096/'], '@type': ['Target', 'Item'], 'name': 'HIVEP1-human', 'label': 'HIVEP1', '@id': '/targets/HIVEP1-human/', 'title': 'HIVEP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '15b9c8b6-8208-47f4-8177-a37f60655206', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF682ICD/ 2227638597 Michael Snyder, Stanford 009276bc0d8c2bc6ce474a6bcbe28243 SRA:SRR14107457 https://www.encodeproject.org/files/ENCFF203QKZ/@@download/ENCFF203QKZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/4a7c9055-dd08-4e21-b05e-56e69d749d18/ENCFF203QKZ.fastq.gz mild to moderate bottlenecking ENCFF450GJU bam bam alignments GRCh38 ENCSR965AWP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3096/'], '@type': ['Target', 'Item'], 'name': 'HIVEP1-human', 'label': 'HIVEP1', '@id': '/targets/HIVEP1-human/', 'title': 'HIVEP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '15b9c8b6-8208-47f4-8177-a37f60655206', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF203QKZ/, /files/ENCFF682ICD/ 3299425303 ENCODE Processing Pipeline fae4301a94f30fa5b58bad328db074b2 https://www.encodeproject.org/files/ENCFF450GJU/@@download/ENCFF450GJU.bam released s3://encode-public/2020/04/21/e583c5a4-0aea-4390-a96e-513b843a6cb0/ENCFF450GJU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF341DZT bam bam unfiltered alignments GRCh38 ENCSR965AWP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3096/'], '@type': ['Target', 'Item'], 'name': 'HIVEP1-human', 'label': 'HIVEP1', '@id': '/targets/HIVEP1-human/', 'title': 'HIVEP1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '15b9c8b6-8208-47f4-8177-a37f60655206', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF203QKZ/, /files/ENCFF682ICD/ 4487996909 ENCODE Processing Pipeline 5d2bb9ed4a6d1b0a072236bef93a4641 https://www.encodeproject.org/files/ENCFF341DZT/@@download/ENCFF341DZT.bam released s3://encode-public/2020/04/21/4bd69b0c-d394-46bb-86d1-049da1f03e6a/ENCFF341DZT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF079CYJ fastq fastq reads ENCSR580RLH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7571/'], '@type': ['Target', 'Item'], 'name': 'ZNF23-human', 'label': 'ZNF23', '@id': '/targets/ZNF23-human/', 'title': 'ZNF23 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4cf636f2-1cb1-4c25-8a85-fa8c472dcc83', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF466PTL/ 2325305591 Michael Snyder, Stanford 6847708bef58cb4cadc132457d943419 https://www.encodeproject.org/files/ENCFF079CYJ/@@download/ENCFF079CYJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/bbc5f4f9-4272-4686-a5ec-ed8b828a7ca5/ENCFF079CYJ.fastq.gz mild to moderate bottlenecking ENCFF466PTL fastq fastq reads ENCSR580RLH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7571/'], '@type': ['Target', 'Item'], 'name': 'ZNF23-human', 'label': 'ZNF23', '@id': '/targets/ZNF23-human/', 'title': 'ZNF23 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4cf636f2-1cb1-4c25-8a85-fa8c472dcc83', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF079CYJ/ 2543673074 Michael Snyder, Stanford a26d821d164e769a58a02c4632ee688e https://www.encodeproject.org/files/ENCFF466PTL/@@download/ENCFF466PTL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/96ede4eb-9c2b-4e5a-b077-cfe29fcc06a9/ENCFF466PTL.fastq.gz mild to moderate bottlenecking ENCFF693WMA bam bam alignments GRCh38 ENCSR580RLH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7571/'], '@type': ['Target', 'Item'], 'name': 'ZNF23-human', 'label': 'ZNF23', '@id': '/targets/ZNF23-human/', 'title': 'ZNF23 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4cf636f2-1cb1-4c25-8a85-fa8c472dcc83', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF079CYJ/, /files/ENCFF466PTL/ 3654804858 ENCODE Processing Pipeline e3b72f2bd70d88c32e84009f7cf3fbb7 https://www.encodeproject.org/files/ENCFF693WMA/@@download/ENCFF693WMA.bam released s3://encode-public/2020/05/15/2c042e57-86dd-43d8-94dc-e837c8c09cb3/ENCFF693WMA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF674XCS bam bam unfiltered alignments GRCh38 ENCSR580RLH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7571/'], '@type': ['Target', 'Item'], 'name': 'ZNF23-human', 'label': 'ZNF23', '@id': '/targets/ZNF23-human/', 'title': 'ZNF23 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '4cf636f2-1cb1-4c25-8a85-fa8c472dcc83', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF079CYJ/, /files/ENCFF466PTL/ 4685572452 ENCODE Processing Pipeline bd1ce50c91c5396590de5381bdeee29c https://www.encodeproject.org/files/ENCFF674XCS/@@download/ENCFF674XCS.bam released s3://encode-public/2020/05/15/314c61b4-eae8-4571-be9e-7821aee75fac/ENCFF674XCS.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF969MAA fastq fastq reads ENCSR653VRZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-392'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/604/'], '@type': ['Target', 'Item'], 'name': 'BCL6-human', 'label': 'BCL6', '@id': '/targets/BCL6-human/', 'title': 'BCL6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0688ba48-4bea-4c9d-82ed-726c3ea6e632', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF545RUS/ 2195308636 Michael Snyder, Stanford d83f9b7a62631b2791122a138a44c09e SRA:SRR14107792 https://www.encodeproject.org/files/ENCFF969MAA/@@download/ENCFF969MAA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/15fd6cb2-2aa8-46e8-9434-1341377e6170/ENCFF969MAA.fastq.gz missing compliant biosample characterization ENCFF545RUS fastq fastq reads ENCSR653VRZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-392'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/604/'], '@type': ['Target', 'Item'], 'name': 'BCL6-human', 'label': 'BCL6', '@id': '/targets/BCL6-human/', 'title': 'BCL6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0688ba48-4bea-4c9d-82ed-726c3ea6e632', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF969MAA/ 2343110159 Michael Snyder, Stanford 64ee2e5c4d894ccf30ea5bb74a9a185f SRA:SRR14107792 https://www.encodeproject.org/files/ENCFF545RUS/@@download/ENCFF545RUS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/769838fa-d440-47ce-bb01-d8a7bf149eed/ENCFF545RUS.fastq.gz missing compliant biosample characterization ENCFF216TEA bam bam unfiltered alignments GRCh38 ENCSR653VRZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-392'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/604/'], '@type': ['Target', 'Item'], 'name': 'BCL6-human', 'label': 'BCL6', '@id': '/targets/BCL6-human/', 'title': 'BCL6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0688ba48-4bea-4c9d-82ed-726c3ea6e632', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF969MAA/, /files/ENCFF545RUS/ 4624872520 ENCODE Processing Pipeline 68a82ef3d8028145781c780f45680e7d https://www.encodeproject.org/files/ENCFF216TEA/@@download/ENCFF216TEA.bam released s3://encode-public/2020/05/15/e9d4dfa2-96b1-4e1f-860f-856a8fc65d91/ENCFF216TEA.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization ENCFF936YYF bam bam alignments GRCh38 ENCSR653VRZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-392'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/604/'], '@type': ['Target', 'Item'], 'name': 'BCL6-human', 'label': 'BCL6', '@id': '/targets/BCL6-human/', 'title': 'BCL6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0688ba48-4bea-4c9d-82ed-726c3ea6e632', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF969MAA/, /files/ENCFF545RUS/ 3856742187 ENCODE Processing Pipeline b8733d7e449e77451d97ebf644c0235b https://www.encodeproject.org/files/ENCFF936YYF/@@download/ENCFF936YYF.bam released s3://encode-public/2020/05/15/344d5747-8967-49e1-91d0-aa0b93b2623e/ENCFF936YYF.bam ENCODE4 v1.4.0 GRCh38 released missing compliant biosample characterization ENCFF356OJU fastq fastq reads ENCSR781PVO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-341'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2077/'], '@type': ['Target', 'Item'], 'name': 'ERF-human', 'label': 'ERF', '@id': '/targets/ERF-human/', 'title': 'ERF (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '6c3958ce-67f4-4f09-addc-27516758d7c4', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF290PAT/ 1892192632 Michael Snyder, Stanford ea907a635b2e631897f04734c171dc60 https://www.encodeproject.org/files/ENCFF356OJU/@@download/ENCFF356OJU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/1166fff0-cd82-4648-87e6-75f9445218dc/ENCFF356OJU.fastq.gz ENCFF290PAT fastq fastq reads ENCSR781PVO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-341'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2077/'], '@type': ['Target', 'Item'], 'name': 'ERF-human', 'label': 'ERF', '@id': '/targets/ERF-human/', 'title': 'ERF (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '6c3958ce-67f4-4f09-addc-27516758d7c4', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF356OJU/ 2111470377 Michael Snyder, Stanford f56103851879077ddeea326f68460ea6 https://www.encodeproject.org/files/ENCFF290PAT/@@download/ENCFF290PAT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/9edefbe4-fbbd-4d27-bb6d-2b95a687e8fd/ENCFF290PAT.fastq.gz ENCFF321GYI bam bam unfiltered alignments GRCh38 ENCSR781PVO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-341'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2077/'], '@type': ['Target', 'Item'], 'name': 'ERF-human', 'label': 'ERF', '@id': '/targets/ERF-human/', 'title': 'ERF (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '6c3958ce-67f4-4f09-addc-27516758d7c4', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF356OJU/, /files/ENCFF290PAT/ 4212986070 ENCODE Processing Pipeline 86239e8dc40c8eaacf2683b5d6ab9ae7 https://www.encodeproject.org/files/ENCFF321GYI/@@download/ENCFF321GYI.bam released s3://encode-public/2020/04/21/164cdbae-4d5d-4f70-945b-1c947fb9bbd1/ENCFF321GYI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF267EFR bam bam alignments GRCh38 ENCSR781PVO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-341'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2077/'], '@type': ['Target', 'Item'], 'name': 'ERF-human', 'label': 'ERF', '@id': '/targets/ERF-human/', 'title': 'ERF (Homo sapiens)', 'investigated_as': ['cofactor'], 'uuid': '6c3958ce-67f4-4f09-addc-27516758d7c4', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF356OJU/, /files/ENCFF290PAT/ 3366984041 ENCODE Processing Pipeline ced2aa0e5a1e1542dc6d1b3fe3b9e315 https://www.encodeproject.org/files/ENCFF267EFR/@@download/ENCFF267EFR.bam released s3://encode-public/2020/04/21/d2ec1cbd-4b5a-473c-a26c-e796fad4f16f/ENCFF267EFR.bam ENCODE4 v1.4.0 GRCh38 released ENCFF301QVG bam bam alignments dm3 ENCSR008VTA Control ChIP-seq /fly-donors/ENCDO005AEU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 200-275 1 1_1 49 /files/ENCFF906RDV/, /files/ENCFF059UHX/ 370929943 Kevin White, UChicago f45b1aa3a29378666a653c3ceda2ed76 https://www.encodeproject.org/files/ENCFF301QVG/@@download/ENCFF301QVG.bam released s3://encode-public/2015/08/03/81950778-1e9e-4095-b5c7-c765504b3a98/ENCFF301QVG.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF977CDR bigWig bigWig signal of unique reads dm3 ENCSR008VTA Control ChIP-seq /fly-donors/ENCDO005AEU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 200-275 1 1_1 /files/ENCFF301QVG/ 14955439 Kevin White, UChicago c87ac7bd56930ea970ff2a22778bcf55 https://www.encodeproject.org/files/ENCFF977CDR/@@download/ENCFF977CDR.bigWig released s3://encode-public/2015/10/06/b5586e67-d901-49d8-b555-2e933109bf07/ENCFF977CDR.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF776VLG bigWig bigWig read-depth normalized signal dm3 ENCSR008VTA Control ChIP-seq /fly-donors/ENCDO005AEU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 200-275 1 1_1 /files/ENCFF301QVG/ 14958708 Kevin White, UChicago f019da67ba9730d8e31b0ff5d130dcad https://www.encodeproject.org/files/ENCFF776VLG/@@download/ENCFF776VLG.bigWig released s3://encode-public/2015/10/06/7af75214-9584-4744-8178-94ac552270d0/ENCFF776VLG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF333BFC bam bam alignments dm6 ENCSR008VTA Control ChIP-seq /fly-donors/ENCDO005AEU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 200-275 1 1_1 49 /files/ENCFF906RDV/, /files/ENCFF479RCH/ 369683989 Kevin White, UChicago 51a6c79fafb60aa93b70fd06a2ac00bd https://www.encodeproject.org/files/ENCFF333BFC/@@download/ENCFF333BFC.bam released s3://encode-public/2016/04/20/e1636d79-7768-401f-9df6-99e61129fb55/ENCFF333BFC.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF907LVB bigWig bigWig signal of unique reads dm6 ENCSR008VTA Control ChIP-seq /fly-donors/ENCDO005AEU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 200-275 1 1_1 /files/ENCFF333BFC/ 16944574 Kevin White, UChicago ed65e0e3231f9abbce5d7e41a2a8510e https://www.encodeproject.org/files/ENCFF907LVB/@@download/ENCFF907LVB.bigWig released s3://encode-public/2016/06/20/39815ba8-a59f-4c2f-85a5-548abfc11b25/ENCFF907LVB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF629NWF bigWig bigWig read-depth normalized signal dm6 ENCSR008VTA Control ChIP-seq /fly-donors/ENCDO005AEU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 200-275 1 1_1 /files/ENCFF333BFC/ 16947209 Kevin White, UChicago 7d3d1f43cffee9163996b98113e4948c https://www.encodeproject.org/files/ENCFF629NWF/@@download/ENCFF629NWF.bigWig released s3://encode-public/2016/06/20/0459c250-b5a6-436c-b186-4285de318cd7/ENCFF629NWF.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF906RDV fastq fastq reads ENCSR008VTA Control ChIP-seq /fly-donors/ENCDO005AEU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35047/'], '@type': ['Target', 'Item'], 'name': 'dl-dmelanogaster', 'label': 'dl', '@id': '/targets/dl-dmelanogaster/', 'title': 'dl (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd98c4518-45f2-4258-9316-c2b1352e6885', 'status': 'released'} dm3 2L 17364165 17471548 DNA 2018-09-28 modERN sonication (Bioruptor generic) 200-275 1 1_1 50 single-ended 281830367 Kevin White, UChicago d31fe52a3025129bd8ac582153070b1a https://www.encodeproject.org/files/ENCFF906RDV/@@download/ENCFF906RDV.fastq.gz Illumina HiSeq 2000 /files/ENCFF967YPA/ released s3://encode-public/2015/07/23/30c69323-274d-4cdd-9457-901ea5a42b40/ENCFF906RDV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF335GWS fastq fastq reads ENCSR006OWT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1610'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7592/'], '@type': ['Target', 'Item'], 'name': 'ZNF41-human', 'label': 'ZNF41', '@id': '/targets/ZNF41-human/', 'title': 'ZNF41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6693039e-a3d9-4b48-bfc7-ed56c09390ed', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF727MLJ/ 1826459116 Michael Snyder, Stanford 66ee3704ba82429dae90229d53f1dcf3 SRA:SRR14103016 https://www.encodeproject.org/files/ENCFF335GWS/@@download/ENCFF335GWS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/e12e3ab3-438e-463d-b603-96333e2d771c/ENCFF335GWS.fastq.gz mild to moderate bottlenecking ENCFF727MLJ fastq fastq reads ENCSR006OWT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1610'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7592/'], '@type': ['Target', 'Item'], 'name': 'ZNF41-human', 'label': 'ZNF41', '@id': '/targets/ZNF41-human/', 'title': 'ZNF41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6693039e-a3d9-4b48-bfc7-ed56c09390ed', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF335GWS/ 1899263314 Michael Snyder, Stanford 9f4b736471c2d142f08b5c90aa0de584 SRA:SRR14103016 https://www.encodeproject.org/files/ENCFF727MLJ/@@download/ENCFF727MLJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/c2140588-a15e-4dd9-aa24-dcd2f6f1befc/ENCFF727MLJ.fastq.gz mild to moderate bottlenecking ENCFF603DHB bam bam alignments GRCh38 ENCSR006OWT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1610'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7592/'], '@type': ['Target', 'Item'], 'name': 'ZNF41-human', 'label': 'ZNF41', '@id': '/targets/ZNF41-human/', 'title': 'ZNF41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6693039e-a3d9-4b48-bfc7-ed56c09390ed', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF335GWS/, /files/ENCFF727MLJ/ 2826061298 ENCODE Processing Pipeline 4ab772cee01af7de4513a86a7d4b71d8 https://www.encodeproject.org/files/ENCFF603DHB/@@download/ENCFF603DHB.bam released s3://encode-public/2020/05/15/fbf99213-60d0-4563-a484-36b1c628d1d0/ENCFF603DHB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF603VCX bam bam unfiltered alignments GRCh38 ENCSR006OWT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1610'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7592/'], '@type': ['Target', 'Item'], 'name': 'ZNF41-human', 'label': 'ZNF41', '@id': '/targets/ZNF41-human/', 'title': 'ZNF41 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6693039e-a3d9-4b48-bfc7-ed56c09390ed', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF335GWS/, /files/ENCFF727MLJ/ 3642918756 ENCODE Processing Pipeline c63cd41e9ebe7b5afd2bc0cfacffa21c https://www.encodeproject.org/files/ENCFF603VCX/@@download/ENCFF603VCX.bam released s3://encode-public/2020/05/15/f1934e8d-92fe-4716-b8b9-54874e890f7f/ENCFF603VCX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF784YNQ fastq fastq reads ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 141765585 Michael Snyder, Stanford afb3940aebf207da96fb0c6cdd50e6a6 https://www.encodeproject.org/files/ENCFF784YNQ/@@download/ENCFF784YNQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1eb4d365-fb60-4d5f-b0f3-8dd45b2ab695/ENCFF784YNQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF351KRS fastq fastq reads ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 286669303 Michael Snyder, Stanford 3c723d23f7235fe47a233342da7efd2a https://www.encodeproject.org/files/ENCFF351KRS/@@download/ENCFF351KRS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6dd2b65b-5af3-40e1-b933-9caaaf415ca2/ENCFF351KRS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF418AGD fastq fastq reads ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 244951537 Michael Snyder, Stanford ce711f6bcacf315bec5afaf83157cf23 https://www.encodeproject.org/files/ENCFF418AGD/@@download/ENCFF418AGD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/d6fc49bc-3c76-41d3-be22-97d95905c706/ENCFF418AGD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF040PVS bam bam alignments ce10 ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF351KRS/, /files/ENCFF784YNQ/, /files/ENCFF418AGD/, /files/ENCFF987UMF/ 886687940 Kevin White, UChicago 7b5b8c08ed52411ed3f050af20aca964 https://www.encodeproject.org/files/ENCFF040PVS/@@download/ENCFF040PVS.bam released s3://encode-public/2017/04/27/b08885ba-133f-4693-8dee-d617771f84c4/ENCFF040PVS.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF227INY bam bam alignments ce11 ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF351KRS/, /files/ENCFF784YNQ/, /files/ENCFF418AGD/, /files/ENCFF586MOL/ 887675746 Kevin White, UChicago 9726c2a3cbab83be3ec05b273a1c87b3 https://www.encodeproject.org/files/ENCFF227INY/@@download/ENCFF227INY.bam released s3://encode-public/2017/04/27/433e5593-0582-420c-b119-dddcc20ae4b0/ENCFF227INY.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF130VJB bigWig bigWig signal of unique reads ce11 ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF227INY/ 10002191 Kevin White, UChicago 2b02d265669050c064ac3a2128e98dbb https://www.encodeproject.org/files/ENCFF130VJB/@@download/ENCFF130VJB.bigWig released s3://encode-public/2017/05/05/5e74b794-4efb-4f3d-b8fc-ae218d592b70/ENCFF130VJB.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF331KEC bigWig bigWig read-depth normalized signal ce10 ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF040PVS/ 10039731 Kevin White, UChicago 3798bb52084a447a92d8555049758e6b https://www.encodeproject.org/files/ENCFF331KEC/@@download/ENCFF331KEC.bigWig released s3://encode-public/2017/05/05/1ef0d504-6725-4ed1-9b9c-341f5ee25df3/ENCFF331KEC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF896SYR bigWig bigWig signal of unique reads ce10 ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF040PVS/ 10004685 Kevin White, UChicago 1dee5f5220c2a088cfbb92fdc0bf6414 https://www.encodeproject.org/files/ENCFF896SYR/@@download/ENCFF896SYR.bigWig released s3://encode-public/2017/05/05/9864c93f-2578-4699-b5b0-9722f311756c/ENCFF896SYR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF563FMH bigWig bigWig read-depth normalized signal ce11 ENCSR566WAD Control ChIP-seq /worm-donors/ENCDO907DJG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181432/'], '@type': ['Target', 'Item'], 'name': 'nhr-25-celegans', 'label': 'nhr-25', '@id': '/targets/nhr-25-celegans/', 'title': 'nhr-25 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b45420fd-72e9-4e94-8f78-d7728b6f8936', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF227INY/ 10028627 Kevin White, UChicago 7d596ff5889392424844d47f05873f4f https://www.encodeproject.org/files/ENCFF563FMH/@@download/ENCFF563FMH.bigWig released s3://encode-public/2017/05/05/e7b22b20-9d21-403a-82ca-760f234a80dd/ENCFF563FMH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF034FQL fastq fastq reads ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 123404232 Michael Snyder, Stanford bb64b5a5ad54d03c6a352cc5fe2e7ae3 https://www.encodeproject.org/files/ENCFF034FQL/@@download/ENCFF034FQL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/fd1856aa-70f8-4ef9-b686-fd7110c35e0b/ENCFF034FQL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF334CYS fastq fastq reads ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 66483177 Michael Snyder, Stanford 4899e16ed4e52dcd2a657e005964992a https://www.encodeproject.org/files/ENCFF334CYS/@@download/ENCFF334CYS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4f07821d-13b9-4849-bed9-6a8eb35878cc/ENCFF334CYS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF692YKO fastq fastq reads ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 33 single-ended 79702130 Michael Snyder, Stanford cb33a418ac57575990062d10b0f34ef1 https://www.encodeproject.org/files/ENCFF692YKO/@@download/ENCFF692YKO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/09cff813-3050-4a68-8ec7-8bb32d4b02e6/ENCFF692YKO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF899EDE bam bam alignments ce10 ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF034FQL/, /files/ENCFF334CYS/, /files/ENCFF692YKO/, /files/ENCFF987UMF/ 355713532 Kevin White, UChicago 9b4c92c8236a0a4bda7ee8d041334a10 https://www.encodeproject.org/files/ENCFF899EDE/@@download/ENCFF899EDE.bam released s3://encode-public/2017/04/27/3872bd58-5723-49b0-a358-4d8d915cc493/ENCFF899EDE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF524WKJ bam bam alignments ce11 ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF034FQL/, /files/ENCFF334CYS/, /files/ENCFF692YKO/, /files/ENCFF586MOL/ 356117425 Kevin White, UChicago b36d2f6dcbbe050cf65a978d3a944606 https://www.encodeproject.org/files/ENCFF524WKJ/@@download/ENCFF524WKJ.bam released s3://encode-public/2017/04/27/bdf49bb7-5998-4b23-986e-ff80f64337c8/ENCFF524WKJ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF504DBB bigWig bigWig signal of unique reads ce10 ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF899EDE/ 10015606 Kevin White, UChicago 70d8323f1e656c066bbbbaec15d27d99 https://www.encodeproject.org/files/ENCFF504DBB/@@download/ENCFF504DBB.bigWig released s3://encode-public/2017/04/29/3aed998f-0579-47cd-a9d7-2e1a6b02ebf2/ENCFF504DBB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF574CJA bigWig bigWig read-depth normalized signal ce10 ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF899EDE/ 9946293 Kevin White, UChicago 414ba873c65dce696289628780b25c78 https://www.encodeproject.org/files/ENCFF574CJA/@@download/ENCFF574CJA.bigWig released s3://encode-public/2017/04/29/e02e0899-3c91-41bb-9793-8faa70eb1e7a/ENCFF574CJA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF435XNT bigWig bigWig read-depth normalized signal ce11 ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF524WKJ/ 9940346 Kevin White, UChicago 7f0f1177fde2ec153c4a502719fc0283 https://www.encodeproject.org/files/ENCFF435XNT/@@download/ENCFF435XNT.bigWig released s3://encode-public/2017/04/29/bf9dfe7c-fad9-4ec6-b153-6bff08199597/ENCFF435XNT.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF110UZY bigWig bigWig signal of unique reads ce11 ENCSR626WOI Control ChIP-seq /worm-donors/ENCDO502CBU/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176050/'], '@type': ['Target', 'Item'], 'name': 'mml-1-celegans', 'label': 'mml-1', '@id': '/targets/mml-1-celegans/', 'title': 'mml-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2693dcbe-1516-44e2-94f3-391c8a566012', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF524WKJ/ 10007332 Kevin White, UChicago 4c701a042ff10aeeef1feeff92461e3c https://www.encodeproject.org/files/ENCFF110UZY/@@download/ENCFF110UZY.bigWig released s3://encode-public/2017/04/29/edf48b86-78ed-4337-9353-4c3c9a78849d/ENCFF110UZY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF217XZP fastq fastq reads ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 31245442 Michael Snyder, Stanford 649488a03c85329a127740109165fe06 https://www.encodeproject.org/files/ENCFF217XZP/@@download/ENCFF217XZP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1d2baa21-7a4b-4d32-b6a4-0c7c5fbe1847/ENCFF217XZP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF401DPV fastq fastq reads ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1 1_1 32 single-ended 118665649 Michael Snyder, Stanford 881521a4ca141b17aa520720c068a660 https://www.encodeproject.org/files/ENCFF401DPV/@@download/ENCFF401DPV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0d112fc5-5568-4162-ba30-92513e5b58fe/ENCFF401DPV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF670JMJ fastq fastq reads ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 2 2_1 32 single-ended 108354931 Michael Snyder, Stanford 8cdb1dc5a302f7f03e7176e3f75a9a1f https://www.encodeproject.org/files/ENCFF670JMJ/@@download/ENCFF670JMJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d2cfcea3-372a-4923-9de8-b9598c1eaf6b/ENCFF670JMJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF985HQK fastq fastq reads ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 3 3_1 32 single-ended 148045891 Michael Snyder, Stanford 8bf4480c160af3881e3e79b78a02eb87 https://www.encodeproject.org/files/ENCFF985HQK/@@download/ENCFF985HQK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/2164e579-b8cf-4963-b033-bd04ea06d669/ENCFF985HQK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF634LNL bam bam alignments ce10 ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF217XZP/, /files/ENCFF401DPV/, /files/ENCFF670JMJ/, /files/ENCFF987UMF/, /files/ENCFF985HQK/ 421907375 Kevin White, UChicago b524302fac395f4e85a4f8e3903812cf https://www.encodeproject.org/files/ENCFF634LNL/@@download/ENCFF634LNL.bam released s3://encode-public/2017/04/27/da006785-8765-4ac4-b44f-4db6ec8d6a7c/ENCFF634LNL.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF514OTY bam bam alignments ce11 ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 32 /files/ENCFF217XZP/, /files/ENCFF401DPV/, /files/ENCFF670JMJ/, /files/ENCFF586MOL/, /files/ENCFF985HQK/ 422243813 Kevin White, UChicago 8e01891b9f426ea6f57d9fdd6f0f12cf https://www.encodeproject.org/files/ENCFF514OTY/@@download/ENCFF514OTY.bam released s3://encode-public/2017/04/27/ab075485-e79b-4290-be9d-55dfde30d680/ENCFF514OTY.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF522VWF bigWig bigWig read-depth normalized signal ce10 ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF634LNL/ 10042752 Kevin White, UChicago fe3f6eb525c59fbc7f8a55cbb1dda5d9 https://www.encodeproject.org/files/ENCFF522VWF/@@download/ENCFF522VWF.bigWig released s3://encode-public/2017/04/29/3e755871-2a7f-491d-8e4f-8e49ab261276/ENCFF522VWF.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF456JHE bigWig bigWig signal of unique reads ce10 ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF634LNL/ 9991089 Kevin White, UChicago a146ac7b4d403f884ec6c02f1e0007ea https://www.encodeproject.org/files/ENCFF456JHE/@@download/ENCFF456JHE.bigWig released s3://encode-public/2017/04/29/dff71597-1bb2-41ba-8ca7-1604f5eae7b8/ENCFF456JHE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF133CWF bigWig bigWig signal of unique reads ce11 ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF514OTY/ 9986916 Kevin White, UChicago 88377ca3a95f200b4521ee8f92875369 https://www.encodeproject.org/files/ENCFF133CWF/@@download/ENCFF133CWF.bigWig released s3://encode-public/2017/04/29/fca64092-1be1-47c9-abd0-2851948e2263/ENCFF133CWF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF554IYW bigWig bigWig read-depth normalized signal ce11 ENCSR829JUS Control ChIP-seq /worm-donors/ENCDO471IIA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181662/'], '@type': ['Target', 'Item'], 'name': 'lin-15B-celegans', 'label': 'lin-15B', '@id': '/targets/lin-15B-celegans/', 'title': 'lin-15B (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd1a6b9fd-20c4-4309-bc45-1f5c29defc55', 'status': 'released'} DNA 2014-03-31 modENCODE sonication (generic microtip) 150-350 1, 2, 3 1_1, 2_1, 3_1 /files/ENCFF514OTY/ 10042502 Kevin White, UChicago 6ac644c201b7c3564b5279d1a45ddefc https://www.encodeproject.org/files/ENCFF554IYW/@@download/ENCFF554IYW.bigWig released s3://encode-public/2017/04/29/dded4e40-fe5a-48ef-bf44-2dbd0d2c2853/ENCFF554IYW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF215PST fastq fastq reads ENCSR231MJJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-704'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221504/'], '@type': ['Target', 'Item'], 'name': 'ZBTB9-human', 'label': 'ZBTB9', '@id': '/targets/ZBTB9-human/', 'title': 'ZBTB9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6d0b2fa-e0cd-4487-b7a7-e2f1a551bb3e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF110UCZ/ 2509199808 Michael Snyder, Stanford 6c41d4bf0b4a0cd0e03f0cc6162bc2f3 https://www.encodeproject.org/files/ENCFF215PST/@@download/ENCFF215PST.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/eae72c3c-d6c0-402e-8ddb-bb79df807092/ENCFF215PST.fastq.gz mild to moderate bottlenecking ENCFF110UCZ fastq fastq reads ENCSR231MJJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-704'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221504/'], '@type': ['Target', 'Item'], 'name': 'ZBTB9-human', 'label': 'ZBTB9', '@id': '/targets/ZBTB9-human/', 'title': 'ZBTB9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6d0b2fa-e0cd-4487-b7a7-e2f1a551bb3e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF215PST/ 2817786872 Michael Snyder, Stanford 0bff842ae180900bcd73c39ff41d3867 https://www.encodeproject.org/files/ENCFF110UCZ/@@download/ENCFF110UCZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/15f94b7a-0fd8-4e47-bb11-1b50345db2a0/ENCFF110UCZ.fastq.gz mild to moderate bottlenecking ENCFF166BCE bam bam unfiltered alignments GRCh38 ENCSR231MJJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-704'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221504/'], '@type': ['Target', 'Item'], 'name': 'ZBTB9-human', 'label': 'ZBTB9', '@id': '/targets/ZBTB9-human/', 'title': 'ZBTB9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6d0b2fa-e0cd-4487-b7a7-e2f1a551bb3e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF215PST/, /files/ENCFF110UCZ/ 4971219409 ENCODE Processing Pipeline 59858c80f23b03b11978b466d2c41dcf https://www.encodeproject.org/files/ENCFF166BCE/@@download/ENCFF166BCE.bam released s3://encode-public/2020/04/21/05d7289d-9828-44da-a142-0c3149c76714/ENCFF166BCE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF568YWN bam bam alignments GRCh38 ENCSR231MJJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-704'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221504/'], '@type': ['Target', 'Item'], 'name': 'ZBTB9-human', 'label': 'ZBTB9', '@id': '/targets/ZBTB9-human/', 'title': 'ZBTB9 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'e6d0b2fa-e0cd-4487-b7a7-e2f1a551bb3e', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF215PST/, /files/ENCFF110UCZ/ 3836931452 ENCODE Processing Pipeline 6799a4940bad14d8064cc775baef6576 https://www.encodeproject.org/files/ENCFF568YWN/@@download/ENCFF568YWN.bam released s3://encode-public/2020/04/21/e81e4609-2f5f-4189-8ee3-9bdcca6dfba8/ENCFF568YWN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF518RFF fastq fastq reads ENCSR182QFE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10620/'], '@type': ['Target', 'Item'], 'name': 'ARID3B-human', 'label': 'ARID3B', '@id': '/targets/ARID3B-human/', 'title': 'ARID3B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d5a9d6c-a667-40f5-9d9f-e071b960e9ec', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF293PHG/ 2218563597 Michael Snyder, Stanford 8445d312ad6f9f0c6564bc67af5486d5 SRA:SRR14106959 https://www.encodeproject.org/files/ENCFF518RFF/@@download/ENCFF518RFF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/19bcd736-f5c2-45c1-96f6-4a1f061c3e27/ENCFF518RFF.fastq.gz ENCFF293PHG fastq fastq reads ENCSR182QFE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10620/'], '@type': ['Target', 'Item'], 'name': 'ARID3B-human', 'label': 'ARID3B', '@id': '/targets/ARID3B-human/', 'title': 'ARID3B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d5a9d6c-a667-40f5-9d9f-e071b960e9ec', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF518RFF/ 2473609260 Michael Snyder, Stanford 132e75da147df7236e7995099a2799ed SRA:SRR14106959 https://www.encodeproject.org/files/ENCFF293PHG/@@download/ENCFF293PHG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/bc586491-577e-43ba-b451-0cd2ed026935/ENCFF293PHG.fastq.gz ENCFF332LRK bam bam alignments GRCh38 ENCSR182QFE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10620/'], '@type': ['Target', 'Item'], 'name': 'ARID3B-human', 'label': 'ARID3B', '@id': '/targets/ARID3B-human/', 'title': 'ARID3B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d5a9d6c-a667-40f5-9d9f-e071b960e9ec', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF518RFF/, /files/ENCFF293PHG/ 3799096599 ENCODE Processing Pipeline 7c6923d439bd2edd3e39bb41af1867f0 https://www.encodeproject.org/files/ENCFF332LRK/@@download/ENCFF332LRK.bam released s3://encode-public/2020/05/15/70c73710-3fb4-4ff7-a8a9-56ac74e4e2e0/ENCFF332LRK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF346WGI bam bam unfiltered alignments GRCh38 ENCSR182QFE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10620/'], '@type': ['Target', 'Item'], 'name': 'ARID3B-human', 'label': 'ARID3B', '@id': '/targets/ARID3B-human/', 'title': 'ARID3B (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '1d5a9d6c-a667-40f5-9d9f-e071b960e9ec', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF518RFF/, /files/ENCFF293PHG/ 4595804339 ENCODE Processing Pipeline 8dc59a598fe39992e361a3763bd8e009 https://www.encodeproject.org/files/ENCFF346WGI/@@download/ENCFF346WGI.bam released s3://encode-public/2020/05/15/f7aafa45-e491-4a12-8c6f-8bbe554d2bf6/ENCFF346WGI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF770TVZ fastq fastq reads ENCSR454HXD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2022-04-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF618MQU/ 3561341124 Michael Snyder, Stanford a37a93e215c7a2354ad6ec7df95a8461 https://www.encodeproject.org/files/ENCFF770TVZ/@@download/ENCFF770TVZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2022/04/12/f524a384-c3eb-46fe-82f9-9233051799e9/ENCFF770TVZ.fastq.gz mild to moderate bottlenecking ENCFF618MQU fastq fastq reads ENCSR454HXD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2022-04-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF770TVZ/ 4130024590 Michael Snyder, Stanford 40653197a5a1b2670c1cc7d637ad88e5 https://www.encodeproject.org/files/ENCFF618MQU/@@download/ENCFF618MQU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2022/04/12/6d661fa4-b068-4dc7-b645-40c84c8d5a6c/ENCFF618MQU.fastq.gz mild to moderate bottlenecking ENCFF601JAD bam bam unfiltered alignments GRCh38 ENCSR454HXD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2022-04-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF618MQU/, /files/ENCFF770TVZ/ 7429496192 ENCODE Processing Pipeline a44873e4c6e7c14212115816ba5c3770 https://www.encodeproject.org/files/ENCFF601JAD/@@download/ENCFF601JAD.bam released s3://encode-public/2022/04/15/a6a872ad-3bfb-47f2-af8e-c6a5bffe2572/ENCFF601JAD.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking ENCFF782DDA bam bam alignments GRCh38 ENCSR454HXD Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2022-04-25 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF618MQU/, /files/ENCFF770TVZ/ 5310397676 ENCODE Processing Pipeline ae808376c502c673ff0098434f8f021d https://www.encodeproject.org/files/ENCFF782DDA/@@download/ENCFF782DDA.bam released s3://encode-public/2022/04/15/977d7a73-af1f-46b6-8655-a503de6cbf62/ENCFF782DDA.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking ENCFF101GGE fastq fastq reads ENCSR415ETK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF344WNX/ 2229399919 Michael Snyder, Stanford 0fb79ab591dd9c689a066b4e41deb6d1 SRA:SRR14103179 https://www.encodeproject.org/files/ENCFF101GGE/@@download/ENCFF101GGE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/f00413e4-e64c-414f-872d-1b673a190810/ENCFF101GGE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF344WNX fastq fastq reads ENCSR415ETK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF101GGE/ 2504070681 Michael Snyder, Stanford 73255d5bb5f344b0ecde887500cb1bc5 SRA:SRR14103179 https://www.encodeproject.org/files/ENCFF344WNX/@@download/ENCFF344WNX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/1e8ae6f7-c665-4268-980c-0d82ca3d6197/ENCFF344WNX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF268GJN bam bam alignments GRCh38 ENCSR415ETK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF101GGE/, /files/ENCFF344WNX/ 2771602906 ENCODE Processing Pipeline 86144677fd0c593b54c6002c893c4384 https://www.encodeproject.org/files/ENCFF268GJN/@@download/ENCFF268GJN.bam released s3://encode-public/2020/05/15/a158bb22-93aa-4638-a1af-c25a0f78e613/ENCFF268GJN.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF046UCM bam bam unfiltered alignments GRCh38 ENCSR415ETK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ZNF507'], 'aliases': ['michael-snyder:TS-1390'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/22847/'], '@type': ['Target', 'Item'], 'label': 'ZNF507', 'title': 'ZNF507 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a48b8f39-beea-48f4-87dd-b17047f9d425', 'schema_version': '14', 'name': 'ZNF507-human', '@id': '/targets/ZNF507-human/', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF101GGE/, /files/ENCFF344WNX/ 4169568473 ENCODE Processing Pipeline 48d3b5613ad9d0f203932cf1dacbad25 https://www.encodeproject.org/files/ENCFF046UCM/@@download/ENCFF046UCM.bam released s3://encode-public/2020/05/15/7ec7db45-de42-42e6-9fd1-58d27dde1218/ENCFF046UCM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF330QCM fastq fastq reads ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 77463364 Michael Snyder, Stanford 0c70c64d4ed026427807b156676682cd https://www.encodeproject.org/files/ENCFF330QCM/@@download/ENCFF330QCM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/11/23/6fad4b73-b207-4663-9e58-e9dea81e6960/ENCFF330QCM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF392WPF fastq fastq reads ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 84581771 Michael Snyder, Stanford bb009939da4889ef7aa7b97e10715287 https://www.encodeproject.org/files/ENCFF392WPF/@@download/ENCFF392WPF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ba68a1d5-17dc-4a3f-a8e7-027cc7783029/ENCFF392WPF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF564WUU bam bam alignments ce10 ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF330QCM/, /files/ENCFF392WPF/, /files/ENCFF987UMF/ 211445846 Kevin White, UChicago 283230115c31341c747113adf4477e2d https://www.encodeproject.org/files/ENCFF564WUU/@@download/ENCFF564WUU.bam released s3://encode-public/2016/10/24/54e5fa16-ee53-4a08-a180-c5eff58f8b82/ENCFF564WUU.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF889JVP bam bam alignments ce11 ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF330QCM/, /files/ENCFF392WPF/, /files/ENCFF586MOL/ 211682304 Kevin White, UChicago 97fcc81ca5568060dfbf5d5478ee0158 https://www.encodeproject.org/files/ENCFF889JVP/@@download/ENCFF889JVP.bam released s3://encode-public/2016/10/24/e3d28e4a-9b0b-451d-ab6d-5162827cce68/ENCFF889JVP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF613MSW bigWig bigWig read-depth normalized signal ce10 ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF564WUU/ 10041972 Kevin White, UChicago efa052a04174d7557341845d0eb18018 https://www.encodeproject.org/files/ENCFF613MSW/@@download/ENCFF613MSW.bigWig released s3://encode-public/2016/10/24/0cf82e18-07d1-4a5c-9b2b-7fc6301b39f8/ENCFF613MSW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF639XRG bigWig bigWig signal of unique reads ce10 ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF564WUU/ 10032025 Kevin White, UChicago 1f794449ff5c6c9c7d70a86b6382ea12 https://www.encodeproject.org/files/ENCFF639XRG/@@download/ENCFF639XRG.bigWig released s3://encode-public/2016/10/24/f5d2cbe4-120f-45af-ad59-50137a681680/ENCFF639XRG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF936YUX bigWig bigWig read-depth normalized signal ce11 ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF889JVP/ 10038993 Kevin White, UChicago aac58b9b8294ff51d33d7af20ed8b4c3 https://www.encodeproject.org/files/ENCFF936YUX/@@download/ENCFF936YUX.bigWig released s3://encode-public/2016/10/24/1ff8b96b-abbc-4d7e-831c-7aa14d9986bf/ENCFF936YUX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF214TWL bigWig bigWig signal of unique reads ce11 ENCSR086RZO Control ChIP-seq /worm-donors/ENCDO910FYD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/189970/'], '@type': ['Target', 'Item'], 'name': 'nhr-237-celegans', 'label': 'nhr-237', '@id': '/targets/nhr-237-celegans/', 'title': 'nhr-237 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '05fe2584-badf-426e-b405-fa7c4a37aff3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF889JVP/ 10024223 Kevin White, UChicago 4b5fd78dafd076ab38350bd1361ea403 https://www.encodeproject.org/files/ENCFF214TWL/@@download/ENCFF214TWL.bigWig released s3://encode-public/2016/10/24/42a28d95-a32b-41e3-a9c8-f19375473d28/ENCFF214TWL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF488HFP fastq fastq reads ENCSR174APY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9096/'], '@type': ['Target', 'Item'], 'name': 'TBX18-human', 'label': 'TBX18', '@id': '/targets/TBX18-human/', 'title': 'TBX18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7e90ff5a-0871-4714-a823-f75f01056420', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF912HCR/ 2722448717 Michael Snyder, Stanford 12432e25ba406d0c304f45f36570f3cf SRA:SRR14106167 https://www.encodeproject.org/files/ENCFF488HFP/@@download/ENCFF488HFP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/f3aff623-7845-42b8-b38f-006952b80b64/ENCFF488HFP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF912HCR fastq fastq reads ENCSR174APY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9096/'], '@type': ['Target', 'Item'], 'name': 'TBX18-human', 'label': 'TBX18', '@id': '/targets/TBX18-human/', 'title': 'TBX18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7e90ff5a-0871-4714-a823-f75f01056420', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF488HFP/ 3137671270 Michael Snyder, Stanford 22bde38fa72c330b944d4a17241e3b64 SRA:SRR14106167 https://www.encodeproject.org/files/ENCFF912HCR/@@download/ENCFF912HCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/fd23b523-68be-4738-b3a1-42df257f9f1b/ENCFF912HCR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF320ZGL bam bam unfiltered alignments GRCh38 ENCSR174APY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9096/'], '@type': ['Target', 'Item'], 'name': 'TBX18-human', 'label': 'TBX18', '@id': '/targets/TBX18-human/', 'title': 'TBX18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7e90ff5a-0871-4714-a823-f75f01056420', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF488HFP/, /files/ENCFF912HCR/ 5362783616 ENCODE Processing Pipeline 9b764fb166eb1ab5d744c99c13aed638 https://www.encodeproject.org/files/ENCFF320ZGL/@@download/ENCFF320ZGL.bam released s3://encode-public/2020/04/21/97be4c6c-a958-4f63-9085-1dfc64833277/ENCFF320ZGL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF336DZQ bam bam alignments GRCh38 ENCSR174APY Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9096/'], '@type': ['Target', 'Item'], 'name': 'TBX18-human', 'label': 'TBX18', '@id': '/targets/TBX18-human/', 'title': 'TBX18 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '7e90ff5a-0871-4714-a823-f75f01056420', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF488HFP/, /files/ENCFF912HCR/ 3925412653 ENCODE Processing Pipeline 6eb4dd38046b7628dac16b918509e7a3 https://www.encodeproject.org/files/ENCFF336DZQ/@@download/ENCFF336DZQ.bam released s3://encode-public/2020/04/21/aa67e7c7-f634-4b1d-a4e4-6c20a368fe72/ENCFF336DZQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF415KBZ fastq fastq reads ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 215284026 Michael Snyder, Stanford 33848bc95356b33d9d9d129cbcd30bd7 https://www.encodeproject.org/files/ENCFF415KBZ/@@download/ENCFF415KBZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/e03451dd-bb5b-469d-9b67-44053ec63af9/ENCFF415KBZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF739SBD fastq fastq reads ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 171009964 Michael Snyder, Stanford d1f9ec1fe76d8bcfbb0c1bd2b4b78dc0 https://www.encodeproject.org/files/ENCFF739SBD/@@download/ENCFF739SBD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/536e9dff-d37e-4a4f-a636-c0a7bdf6e3f0/ENCFF739SBD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF779ACY bam bam alignments ce10 ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF415KBZ/, /files/ENCFF739SBD/, /files/ENCFF987UMF/ 506127942 Kevin White, UChicago 3f2376cadd7dacba9ec92db634ff5f8c https://www.encodeproject.org/files/ENCFF779ACY/@@download/ENCFF779ACY.bam released s3://encode-public/2016/10/18/657d4891-a721-4645-b52d-f0f724580d96/ENCFF779ACY.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF096ZLQ bam bam alignments ce11 ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF415KBZ/, /files/ENCFF739SBD/, /files/ENCFF586MOL/ 506685623 Kevin White, UChicago 9335e18412b360111c7d7b49f06c3f61 https://www.encodeproject.org/files/ENCFF096ZLQ/@@download/ENCFF096ZLQ.bam released s3://encode-public/2016/10/19/fe877716-e31d-4dad-99dc-a4bc3947c640/ENCFF096ZLQ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF449SZB bigWig bigWig read-depth normalized signal ce10 ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF779ACY/ 10079576 Kevin White, UChicago 9c6a7b85481292ed25522068d70d3b3d https://www.encodeproject.org/files/ENCFF449SZB/@@download/ENCFF449SZB.bigWig released s3://encode-public/2016/10/20/4893baca-07c4-49d6-902f-ca25f1b7486c/ENCFF449SZB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF677GHQ bigWig bigWig signal of unique reads ce10 ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF779ACY/ 10020150 Kevin White, UChicago ce2dfa286a5b8a6c158616af85731fa6 https://www.encodeproject.org/files/ENCFF677GHQ/@@download/ENCFF677GHQ.bigWig released s3://encode-public/2016/10/20/500227e6-4bca-41e7-ae30-b9e946a2a095/ENCFF677GHQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF337QPL bigWig bigWig read-depth normalized signal ce11 ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF096ZLQ/ 10073873 Kevin White, UChicago cb06030accb8fa1e7b38e95f16cccb3e https://www.encodeproject.org/files/ENCFF337QPL/@@download/ENCFF337QPL.bigWig released s3://encode-public/2016/10/21/ffcbc7a3-db47-4707-a39e-ef546d0df584/ENCFF337QPL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF425LWZ bigWig bigWig signal of unique reads ce11 ENCSR269UEF Control ChIP-seq /worm-donors/ENCDO778WPJ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/176091/'], '@type': ['Target', 'Item'], 'name': 'mab-5-celegans', 'label': 'mab-5', '@id': '/targets/mab-5-celegans/', 'title': 'mab-5 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '1b1a1d38-6458-4d3f-a0d9-65aa140c65bd', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF096ZLQ/ 10015243 Kevin White, UChicago 609bb55ba91d418dbc0952782fd1bfd3 https://www.encodeproject.org/files/ENCFF425LWZ/@@download/ENCFF425LWZ.bigWig released s3://encode-public/2016/10/21/82223a7e-1c36-4d86-b11d-6c30a3fbb061/ENCFF425LWZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF636MYK fastq fastq reads ENCSR733QVR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1592'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7693/'], '@type': ['Target', 'Item'], 'name': 'ZNF134-human', 'label': 'ZNF134', '@id': '/targets/ZNF134-human/', 'title': 'ZNF134 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf882d35-8868-4238-b089-1afc51f457af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF684PRR/ 1644894168 Michael Snyder, Stanford 62e7097a1dc8b5248f7735a9254c2a90 SRA:SRR14103317 https://www.encodeproject.org/files/ENCFF636MYK/@@download/ENCFF636MYK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/0ca41601-7b97-4553-81bc-20ec8bfaeed0/ENCFF636MYK.fastq.gz ENCFF684PRR fastq fastq reads ENCSR733QVR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1592'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7693/'], '@type': ['Target', 'Item'], 'name': 'ZNF134-human', 'label': 'ZNF134', '@id': '/targets/ZNF134-human/', 'title': 'ZNF134 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf882d35-8868-4238-b089-1afc51f457af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF636MYK/ 1753126063 Michael Snyder, Stanford 2aa8acc922dd45eb52c68ed80e12c6ee SRA:SRR14103317 https://www.encodeproject.org/files/ENCFF684PRR/@@download/ENCFF684PRR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/63aad68f-b426-4fc2-83f6-9b24ba34e11f/ENCFF684PRR.fastq.gz ENCFF455UYT bam bam unfiltered alignments GRCh38 ENCSR733QVR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1592'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7693/'], '@type': ['Target', 'Item'], 'name': 'ZNF134-human', 'label': 'ZNF134', '@id': '/targets/ZNF134-human/', 'title': 'ZNF134 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf882d35-8868-4238-b089-1afc51f457af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF636MYK/, /files/ENCFF684PRR/ 3535602121 ENCODE Processing Pipeline f07ebca28f92f2b804d32b3200564679 https://www.encodeproject.org/files/ENCFF455UYT/@@download/ENCFF455UYT.bam released s3://encode-public/2020/05/15/97e0a944-4221-413e-ac90-36d9fbbd9429/ENCFF455UYT.bam ENCODE4 v1.4.0 GRCh38 released ENCFF614WBM bam bam alignments GRCh38 ENCSR733QVR Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1592'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7693/'], '@type': ['Target', 'Item'], 'name': 'ZNF134-human', 'label': 'ZNF134', '@id': '/targets/ZNF134-human/', 'title': 'ZNF134 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bf882d35-8868-4238-b089-1afc51f457af', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF636MYK/, /files/ENCFF684PRR/ 2959389716 ENCODE Processing Pipeline 038249b4dac09b5ecc75ca0dc96c1734 https://www.encodeproject.org/files/ENCFF614WBM/@@download/ENCFF614WBM.bam released s3://encode-public/2020/05/15/ea49b14f-1443-4a06-9679-bc04267c2024/ENCFF614WBM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF430DIL fastq fastq reads ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 189752523 Michael Snyder, Stanford 0edcad285345f33f8e235cd288e0c1bc https://www.encodeproject.org/files/ENCFF430DIL/@@download/ENCFF430DIL.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6419fb33-7eab-4cf8-9c23-c2a3bba4fa09/ENCFF430DIL.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF391JUC fastq fastq reads ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 182987567 Michael Snyder, Stanford 22338c50f13bf65230e6ce7bf0610526 https://www.encodeproject.org/files/ENCFF391JUC/@@download/ENCFF391JUC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b23c251a-e98b-4c99-9e7a-1f81af1aa189/ENCFF391JUC.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF537IYR bam bam alignments ce10 ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF430DIL/, /files/ENCFF391JUC/, /files/ENCFF987UMF/ 476622154 Kevin White, UChicago f50897b333a451f752e303a7616d6aac https://www.encodeproject.org/files/ENCFF537IYR/@@download/ENCFF537IYR.bam released s3://encode-public/2016/10/18/827159a5-148b-4c1d-8a2e-4113d84b3952/ENCFF537IYR.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF660WLF bam bam alignments ce11 ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF430DIL/, /files/ENCFF391JUC/, /files/ENCFF586MOL/ 477112901 Kevin White, UChicago 29b2db9f834f01c8a9fcf391efe6c33c https://www.encodeproject.org/files/ENCFF660WLF/@@download/ENCFF660WLF.bam released s3://encode-public/2016/10/18/f6cabec9-5851-4edf-8458-790029209176/ENCFF660WLF.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF388EWA bigWig bigWig read-depth normalized signal ce10 ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF537IYR/ 10017017 Kevin White, UChicago 0e8169de2013d0478fd770ee6faeffb7 https://www.encodeproject.org/files/ENCFF388EWA/@@download/ENCFF388EWA.bigWig released s3://encode-public/2016/10/20/97365bfe-16f7-4c04-a162-ede9329c0e7d/ENCFF388EWA.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF930EIM bigWig bigWig signal of unique reads ce10 ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF537IYR/ 10033121 Kevin White, UChicago ea917c898e27f8150582a4a1905bcd8f https://www.encodeproject.org/files/ENCFF930EIM/@@download/ENCFF930EIM.bigWig released s3://encode-public/2016/10/20/bc6238b9-a0f7-4694-b9c8-0c9ece37e2af/ENCFF930EIM.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF978FBP bigWig bigWig read-depth normalized signal ce11 ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF660WLF/ 10006989 Kevin White, UChicago 7e6bc08b9144ae29658f28cd38dcf20d https://www.encodeproject.org/files/ENCFF978FBP/@@download/ENCFF978FBP.bigWig released s3://encode-public/2016/10/20/bd34c4d4-2c2c-467e-a62b-4981838ec6dc/ENCFF978FBP.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF503QHA bigWig bigWig signal of unique reads ce11 ENCSR606NPE Control ChIP-seq /worm-donors/ENCDO900WBI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180663/'], '@type': ['Target', 'Item'], 'name': 'fkh-2-celegans', 'label': 'fkh-2', '@id': '/targets/fkh-2-celegans/', 'title': 'fkh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '62294b41-996b-49fd-8f22-8ba22443c9bb', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF660WLF/ 10030634 Kevin White, UChicago 5702ca9cd8280962e37db4a954ccde15 https://www.encodeproject.org/files/ENCFF503QHA/@@download/ENCFF503QHA.bigWig released s3://encode-public/2016/10/20/189d09c7-2f36-4f37-be1f-2fc0fe3b72f8/ENCFF503QHA.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF865KDK fastq fastq reads ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 119387781 Michael Snyder, Stanford 328d530a81eb73e1a6e54fc4ad0f23b0 https://www.encodeproject.org/files/ENCFF865KDK/@@download/ENCFF865KDK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/c047391a-d147-4119-a66c-ed13fb58a852/ENCFF865KDK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF994ALW fastq fastq reads ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 218866069 Michael Snyder, Stanford a4559a1a20b1ebdd25976d091c2dd8bb https://www.encodeproject.org/files/ENCFF994ALW/@@download/ENCFF994ALW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d33e8de5-5c9b-4f49-88e5-24c5b5608749/ENCFF994ALW.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF737YPM bam bam alignments ce10 ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF994ALW/, /files/ENCFF865KDK/, /files/ENCFF987UMF/ 446486920 Kevin White, UChicago 79de117c5f6ad36579dfc4f051c0f232 https://www.encodeproject.org/files/ENCFF737YPM/@@download/ENCFF737YPM.bam released s3://encode-public/2016/10/18/ba06b8e6-ace6-4cd3-a11b-b27b0c2b5548/ENCFF737YPM.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF355FTW bam bam alignments ce11 ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF994ALW/, /files/ENCFF865KDK/, /files/ENCFF586MOL/ 447010186 Kevin White, UChicago 7b559a44a47dbef0a9ae77096c828179 https://www.encodeproject.org/files/ENCFF355FTW/@@download/ENCFF355FTW.bam released s3://encode-public/2016/10/18/b2e635ea-eb3a-4845-8a13-1f81e34db02e/ENCFF355FTW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF298JXK bigWig bigWig read-depth normalized signal ce10 ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF737YPM/ 9985638 Kevin White, UChicago f30a6f6f129730158a1dfbc858e2cce6 https://www.encodeproject.org/files/ENCFF298JXK/@@download/ENCFF298JXK.bigWig released s3://encode-public/2016/10/20/9806f5af-eb33-496b-9261-227f956a2baa/ENCFF298JXK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF976KVJ bigWig bigWig signal of unique reads ce10 ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF737YPM/ 10004463 Kevin White, UChicago b2a0859141a01e866d6326a908c6e463 https://www.encodeproject.org/files/ENCFF976KVJ/@@download/ENCFF976KVJ.bigWig released s3://encode-public/2016/10/20/6e50377e-d692-4767-ade3-b92d95dbc3d9/ENCFF976KVJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF902FGR bigWig bigWig signal of unique reads ce11 ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF355FTW/ 9991892 Kevin White, UChicago e97ec22ac5c620a4655c2b7049b36fdf https://www.encodeproject.org/files/ENCFF902FGR/@@download/ENCFF902FGR.bigWig released s3://encode-public/2016/10/20/172b92b1-a1e4-4343-a81e-eb7d0f3976c1/ENCFF902FGR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF521FKO bigWig bigWig read-depth normalized signal ce11 ENCSR644RXR Control ChIP-seq /worm-donors/ENCDO888KYV/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172732/'], '@type': ['Target', 'Item'], 'name': 'mef-2-celegans', 'label': 'mef-2', '@id': '/targets/mef-2-celegans/', 'title': 'mef-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b2fbddd7-a9c6-4ef2-9dcf-0a70a5ba501e', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF355FTW/ 9973175 Kevin White, UChicago 5694536dccdc0d8d959be8ef7ebd0a3c https://www.encodeproject.org/files/ENCFF521FKO/@@download/ENCFF521FKO.bigWig released s3://encode-public/2016/10/20/4601438b-813c-4012-ac78-9b3a016e4b8e/ENCFF521FKO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF131YUC fastq fastq reads ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 121747369 Michael Snyder, Stanford 882d539cf3cb50653cac2cc6a134015f https://www.encodeproject.org/files/ENCFF131YUC/@@download/ENCFF131YUC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/495a8193-904c-407c-ba55-9ed6fba9d980/ENCFF131YUC.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF279KVF fastq fastq reads ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 153736676 Michael Snyder, Stanford e2ba364607f06f1eaa7f7af325707b21 https://www.encodeproject.org/files/ENCFF279KVF/@@download/ENCFF279KVF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/12b4e64c-ce88-4c04-a110-a5cd0bbed5ce/ENCFF279KVF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF741FKT bam bam alignments ce10 ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF131YUC/, /files/ENCFF279KVF/, /files/ENCFF987UMF/ 348741703 Kevin White, UChicago 6f68778bb800f683a22ba5b0d1fe26a5 https://www.encodeproject.org/files/ENCFF741FKT/@@download/ENCFF741FKT.bam released s3://encode-public/2016/10/26/afc72d41-efca-47fb-97a0-e4bae77e94be/ENCFF741FKT.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF599YGG bam bam alignments ce11 ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF131YUC/, /files/ENCFF279KVF/, /files/ENCFF586MOL/ 349117494 Kevin White, UChicago 6f1b7225f2f621aef5bd7ceebce7bd72 https://www.encodeproject.org/files/ENCFF599YGG/@@download/ENCFF599YGG.bam released s3://encode-public/2016/10/26/96fe6356-67df-466f-bf1c-bda2d54b2ccc/ENCFF599YGG.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF322HNY bigWig bigWig signal of unique reads ce10 ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF741FKT/ 10049738 Kevin White, UChicago b3f50d08d7e2ecf3b5d568a9bde38ecb https://www.encodeproject.org/files/ENCFF322HNY/@@download/ENCFF322HNY.bigWig released s3://encode-public/2016/10/26/0adc4987-68f2-475d-808e-d3deda8c4662/ENCFF322HNY.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF229RQU bigWig bigWig read-depth normalized signal ce10 ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF741FKT/ 10059390 Kevin White, UChicago 36c9adf922f4b039f8fb40db89e12ae2 https://www.encodeproject.org/files/ENCFF229RQU/@@download/ENCFF229RQU.bigWig released s3://encode-public/2016/10/26/0f1ae843-36e5-41e8-bc60-276ef497468f/ENCFF229RQU.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF288BTM bigWig bigWig read-depth normalized signal ce11 ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF599YGG/ 10055417 Kevin White, UChicago db7c8d98fb6a0bbcae40ce95b2e61a03 https://www.encodeproject.org/files/ENCFF288BTM/@@download/ENCFF288BTM.bigWig released s3://encode-public/2016/10/26/5678d854-ea7b-404a-867c-5e694215d52a/ENCFF288BTM.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF535SGD bigWig bigWig signal of unique reads ce11 ENCSR333PLH Control ChIP-seq /worm-donors/ENCDO767KMO/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178074/'], '@type': ['Target', 'Item'], 'name': 'mep-1-celegans', 'label': 'mep-1', '@id': '/targets/mep-1-celegans/', 'title': 'mep-1 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '89e8ee28-fbfe-4797-8337-cbd51bb80e94', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF599YGG/ 10046898 Kevin White, UChicago 4ae877ffdc6987dc2861b73cd3925606 https://www.encodeproject.org/files/ENCFF535SGD/@@download/ENCFF535SGD.bigWig released s3://encode-public/2016/10/26/fbc0bc00-30dc-4066-af98-8bffc37dbb11/ENCFF535SGD.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF224XWB fastq fastq reads ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 65301890 Michael Snyder, Stanford 1e8dd1b9217963722b41e716a4b97e81 https://www.encodeproject.org/files/ENCFF224XWB/@@download/ENCFF224XWB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/e6382e79-8015-4075-9244-bc0ea6f0b1a7/ENCFF224XWB.fastq.gz ENCFF675WME fastq fastq reads ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 205323133 Michael Snyder, Stanford 8d95a8839975589c981c8ac22e621e68 https://www.encodeproject.org/files/ENCFF675WME/@@download/ENCFF675WME.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/7c43541a-8943-48dc-802d-28ff1ba9c8d7/ENCFF675WME.fastq.gz ENCFF779YZG bam bam alignments ce11 ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF224XWB/, /files/ENCFF675WME/, /files/ENCFF586MOL/ 300730952 Kevin White, UChicago f44f9d56dcad37772982a1a722a53aed https://www.encodeproject.org/files/ENCFF779YZG/@@download/ENCFF779YZG.bam released s3://encode-public/2018/01/09/a3f09cc6-f7fb-4b57-b404-af05fcb351db/ENCFF779YZG.bam Lab custom ce11 released ENCFF810MCQ bigWig bigWig read-depth normalized signal ce10 ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF351WTK/ 10056257 Kevin White, UChicago b4eeb089536a3d9ecf6a59e694d78ae0 https://www.encodeproject.org/files/ENCFF810MCQ/@@download/ENCFF810MCQ.bigWig released s3://encode-public/2018/01/09/092bdba1-c02f-48ca-8cf1-947fd6f7b1fb/ENCFF810MCQ.bigWig Lab custom ce10 archived ENCFF028JZM bigWig bigWig signal of unique reads ce10 ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF351WTK/ 10066283 Kevin White, UChicago 0378c4000dd70ba2a83fa6c3713b486a https://www.encodeproject.org/files/ENCFF028JZM/@@download/ENCFF028JZM.bigWig released s3://encode-public/2018/01/09/8baf3e5f-faac-48f9-aad7-2e3dd89814c4/ENCFF028JZM.bigWig Lab custom ce10 archived ENCFF351WTK bam bam alignments ce10 ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF224XWB/, /files/ENCFF675WME/, /files/ENCFF987UMF/ 300480306 Kevin White, UChicago 7f9da9e4090e575054ebeaf8d78aa43e https://www.encodeproject.org/files/ENCFF351WTK/@@download/ENCFF351WTK.bam released s3://encode-public/2018/01/09/7d93f2ba-0e45-493b-ac15-e7a1f808e6cb/ENCFF351WTK.bam Lab custom ce10 archived ENCFF160VDG bigWig bigWig signal of unique reads ce11 ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF779YZG/ 10066149 Kevin White, UChicago 65424a39dc93f897c5b4b2e75a170ce8 https://www.encodeproject.org/files/ENCFF160VDG/@@download/ENCFF160VDG.bigWig released s3://encode-public/2018/01/09/fd9cc79d-eca8-4f01-9ce1-9294eb5d353e/ENCFF160VDG.bigWig Lab custom ce11 released ENCFF600UIH bigWig bigWig read-depth normalized signal ce11 ENCSR338IOQ Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF779YZG/ 10053691 Kevin White, UChicago 0fd156663c8240c364ef0ce40aacabfb https://www.encodeproject.org/files/ENCFF600UIH/@@download/ENCFF600UIH.bigWig released s3://encode-public/2018/01/09/6eb56c45-799e-44fe-9c72-4b67b20fb841/ENCFF600UIH.bigWig Lab custom ce11 released ENCFF112HAO fastq fastq reads ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 260951670 Michael Snyder, Stanford 605d4407803c9ee41068950e35cf2dd7 https://www.encodeproject.org/files/ENCFF112HAO/@@download/ENCFF112HAO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f932f031-792e-4f41-850d-60f1321911a4/ENCFF112HAO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF106EWA fastq fastq reads ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 225318866 Michael Snyder, Stanford 800be133d2e31a0001eb78f95cdabcce https://www.encodeproject.org/files/ENCFF106EWA/@@download/ENCFF106EWA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6d7f768c-f511-47e9-8ebc-9a3ad82da51d/ENCFF106EWA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF506CCH bam bam alignments ce10 ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF112HAO/, /files/ENCFF106EWA/, /files/ENCFF987UMF/ 638062392 Kevin White, UChicago 21f4a78f653acfc5fb99eca8d5edb327 https://www.encodeproject.org/files/ENCFF506CCH/@@download/ENCFF506CCH.bam released s3://encode-public/2016/10/18/3e583ce8-3d52-4182-9e07-3ec13e3d3962/ENCFF506CCH.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF874WZV bam bam alignments ce11 ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF112HAO/, /files/ENCFF106EWA/, /files/ENCFF586MOL/ 638840875 Kevin White, UChicago df04468bc90a650de2454bb8f5cb66f8 https://www.encodeproject.org/files/ENCFF874WZV/@@download/ENCFF874WZV.bam released s3://encode-public/2016/10/19/3c0d1b8f-a189-426f-a97e-9066e3cd1535/ENCFF874WZV.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF338OIB bigWig bigWig signal of unique reads ce10 ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF506CCH/ 10027692 Kevin White, UChicago 609b3ee9b3524da791da580daa35cba3 https://www.encodeproject.org/files/ENCFF338OIB/@@download/ENCFF338OIB.bigWig released s3://encode-public/2016/10/20/07af8261-74ea-46d4-b7cf-0b797fdb77d0/ENCFF338OIB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF808ORZ bigWig bigWig read-depth normalized signal ce10 ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF506CCH/ 10038899 Kevin White, UChicago bb0a6979e8fb79374acf248ba29f8fe9 https://www.encodeproject.org/files/ENCFF808ORZ/@@download/ENCFF808ORZ.bigWig released s3://encode-public/2016/10/20/fb2da435-e634-4284-88db-4b4ce2fbe53a/ENCFF808ORZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF975KOW bigWig bigWig read-depth normalized signal ce11 ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF874WZV/ 10038134 Kevin White, UChicago 8d5fbce7f3ce343c20035721621e130f https://www.encodeproject.org/files/ENCFF975KOW/@@download/ENCFF975KOW.bigWig released s3://encode-public/2016/10/20/2acf1139-cf10-4ae7-8ebd-1a46e767d9d2/ENCFF975KOW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF738JRN bigWig bigWig signal of unique reads ce11 ENCSR613HUF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF874WZV/ 10026773 Kevin White, UChicago 5650379311c191e626be39cae40b0485 https://www.encodeproject.org/files/ENCFF738JRN/@@download/ENCFF738JRN.bigWig released s3://encode-public/2016/10/20/a5f2f27c-8de3-43f7-a321-759422bc6c84/ENCFF738JRN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF740LPX fastq fastq reads ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 115370402 Michael Snyder, Stanford 726eddf088301df2c932dd23097aa37e https://www.encodeproject.org/files/ENCFF740LPX/@@download/ENCFF740LPX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/6a75a37f-05fb-4897-ae05-6d195f27169a/ENCFF740LPX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF230IQP fastq fastq reads ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 235249113 Michael Snyder, Stanford 97d821685fa7ed97358352638fadec1c https://www.encodeproject.org/files/ENCFF230IQP/@@download/ENCFF230IQP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/17/1e822056-c9a7-4745-b2db-948039d9415b/ENCFF230IQP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF423XEK bam bam alignments ce10 ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF740LPX/, /files/ENCFF230IQP/, /files/ENCFF987UMF/ 461517354 Kevin White, UChicago a032d3d627e4e731396f6a4161695384 https://www.encodeproject.org/files/ENCFF423XEK/@@download/ENCFF423XEK.bam released s3://encode-public/2016/10/18/46cd24d2-03b5-4a9a-89ce-b85b2723f5a9/ENCFF423XEK.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF088TUA bam bam alignments ce11 ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF740LPX/, /files/ENCFF230IQP/, /files/ENCFF586MOL/ 462032947 Kevin White, UChicago bcfa5d681f363befc28c9e3dfd278dc6 https://www.encodeproject.org/files/ENCFF088TUA/@@download/ENCFF088TUA.bam released s3://encode-public/2016/10/19/840f1a68-0035-48e4-bc28-d39f52e7a9e8/ENCFF088TUA.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF971WJQ bigWig bigWig read-depth normalized signal ce10 ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF423XEK/ 10058361 Kevin White, UChicago 3ff3dc9e0a0d82920c6496b70ebb459f https://www.encodeproject.org/files/ENCFF971WJQ/@@download/ENCFF971WJQ.bigWig released s3://encode-public/2016/10/20/3f40699d-4106-4da1-adf6-ac1f4038d012/ENCFF971WJQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF972XNF bigWig bigWig signal of unique reads ce10 ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF423XEK/ 10006944 Kevin White, UChicago 97df228b85e3d3994bd596c05fdf2055 https://www.encodeproject.org/files/ENCFF972XNF/@@download/ENCFF972XNF.bigWig released s3://encode-public/2016/10/20/f509d694-8d5b-4cb9-b3be-4af34c79f4b1/ENCFF972XNF.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF481MDF bigWig bigWig read-depth normalized signal ce11 ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF088TUA/ 10051784 Kevin White, UChicago b8e82bc415a8be779f98483adae20bcd https://www.encodeproject.org/files/ENCFF481MDF/@@download/ENCFF481MDF.bigWig released s3://encode-public/2016/10/21/5b6f9337-8627-498a-a5f2-46cd20bd1248/ENCFF481MDF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF172RQA bigWig bigWig signal of unique reads ce11 ENCSR563WCK Control ChIP-seq /worm-donors/ENCDO712HYI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172917/'], '@type': ['Target', 'Item'], 'name': 'blmp-1-celegans', 'label': 'blmp-1', '@id': '/targets/blmp-1-celegans/', 'title': 'blmp-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd4241f93-e9a7-47ac-a464-465ad1e55876', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF088TUA/ 10003774 Kevin White, UChicago 92621d02391ab52f55c07f01e6e585d1 https://www.encodeproject.org/files/ENCFF172RQA/@@download/ENCFF172RQA.bigWig released s3://encode-public/2016/10/21/695d9434-54d8-4afe-a6e7-7d071a0f6af3/ENCFF172RQA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF380UAO fastq fastq reads ENCSR209QEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-855'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/127343/'], '@type': ['Target', 'Item'], 'name': 'DMBX1-human', 'label': 'DMBX1', '@id': '/targets/DMBX1-human/', 'title': 'DMBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9aa5b44d-6f9c-481e-8d9b-2ac760c79b7b', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF837MDL/ 2617956486 Michael Snyder, Stanford 9ecf62a231091ebd39f0ddb693d499e6 https://www.encodeproject.org/files/ENCFF380UAO/@@download/ENCFF380UAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/7ca4bf5e-dcaf-4cc2-824d-f407224aee91/ENCFF380UAO.fastq.gz mild to moderate bottlenecking missing compliant biosample characterization ENCFF837MDL fastq fastq reads ENCSR209QEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-855'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/127343/'], '@type': ['Target', 'Item'], 'name': 'DMBX1-human', 'label': 'DMBX1', '@id': '/targets/DMBX1-human/', 'title': 'DMBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9aa5b44d-6f9c-481e-8d9b-2ac760c79b7b', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF380UAO/ 2870318262 Michael Snyder, Stanford 530616cbd6bd77319f3929ed55427d99 https://www.encodeproject.org/files/ENCFF837MDL/@@download/ENCFF837MDL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/4d73a045-d175-453e-b29b-ea3069b5621c/ENCFF837MDL.fastq.gz mild to moderate bottlenecking missing compliant biosample characterization ENCFF634HDF bam bam unfiltered alignments GRCh38 ENCSR209QEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-855'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/127343/'], '@type': ['Target', 'Item'], 'name': 'DMBX1-human', 'label': 'DMBX1', '@id': '/targets/DMBX1-human/', 'title': 'DMBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9aa5b44d-6f9c-481e-8d9b-2ac760c79b7b', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF380UAO/, /files/ENCFF837MDL/ 5087761634 ENCODE Processing Pipeline c6b20df5c319ffed0b282b3903573cb9 https://www.encodeproject.org/files/ENCFF634HDF/@@download/ENCFF634HDF.bam released s3://encode-public/2020/04/21/5d87de2d-c993-4e35-a614-00b85b907357/ENCFF634HDF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking missing compliant biosample characterization ENCFF601NMW bam bam alignments GRCh38 ENCSR209QEB Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-855'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/127343/'], '@type': ['Target', 'Item'], 'name': 'DMBX1-human', 'label': 'DMBX1', '@id': '/targets/DMBX1-human/', 'title': 'DMBX1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9aa5b44d-6f9c-481e-8d9b-2ac760c79b7b', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF380UAO/, /files/ENCFF837MDL/ 3813280725 ENCODE Processing Pipeline b31f0a7f73e40f6f1424f02de2af413b https://www.encodeproject.org/files/ENCFF601NMW/@@download/ENCFF601NMW.bam released s3://encode-public/2020/04/21/5102b1f2-339c-421e-b856-9cb62739c031/ENCFF601NMW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking missing compliant biosample characterization ENCFF479AQF fastq fastq reads ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 188664038 Michael Snyder, Stanford 1549fc9441b55aaab6e9b4b4929aa63d https://www.encodeproject.org/files/ENCFF479AQF/@@download/ENCFF479AQF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b1201f6a-d396-41bc-a656-0cb095ede163/ENCFF479AQF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF752WXR fastq fastq reads ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 157444553 Michael Snyder, Stanford 51b591104175297561c20db4f7274c34 https://www.encodeproject.org/files/ENCFF752WXR/@@download/ENCFF752WXR.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/b9c5dc01-2ab1-4fd6-abc3-9c761e27345a/ENCFF752WXR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF472CZC bam bam alignments ce10 ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF752WXR/, /files/ENCFF479AQF/, /files/ENCFF987UMF/ 423602466 Kevin White, UChicago a4c4dd3b9d96ba61ffdc8248a1751b65 https://www.encodeproject.org/files/ENCFF472CZC/@@download/ENCFF472CZC.bam released s3://encode-public/2016/10/18/6c764175-e2d3-4267-b81f-64ae375795f9/ENCFF472CZC.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF455COR bam bam alignments ce11 ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF752WXR/, /files/ENCFF479AQF/, /files/ENCFF586MOL/ 424033281 Kevin White, UChicago 48e6c4209fcd770b64a04c2bdb4ec564 https://www.encodeproject.org/files/ENCFF455COR/@@download/ENCFF455COR.bam released s3://encode-public/2016/10/18/d852c826-9c8c-4e4a-90da-8ecd9b4b1c09/ENCFF455COR.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF988UHT bigWig bigWig signal of unique reads ce10 ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF472CZC/ 10054538 Kevin White, UChicago c5585ff5c857fb39a647df678688e88f https://www.encodeproject.org/files/ENCFF988UHT/@@download/ENCFF988UHT.bigWig released s3://encode-public/2016/10/20/9c16c09e-2c83-438c-9297-bfb2a4c7fc10/ENCFF988UHT.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF759URW bigWig bigWig read-depth normalized signal ce10 ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF472CZC/ 10002242 Kevin White, UChicago cd05dc4d0179a7fb6930cfc480b5e93a https://www.encodeproject.org/files/ENCFF759URW/@@download/ENCFF759URW.bigWig released s3://encode-public/2016/10/20/6c01ffa5-07a1-4cce-a657-a402a7b3bbbb/ENCFF759URW.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF809HJY bigWig bigWig read-depth normalized signal ce11 ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF455COR/ 10001244 Kevin White, UChicago f63376bfaee8bff3cbd0905b583e5609 https://www.encodeproject.org/files/ENCFF809HJY/@@download/ENCFF809HJY.bigWig released s3://encode-public/2016/10/20/4ffcdb7c-a620-47ca-9c4e-26a3f1497ec3/ENCFF809HJY.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF846PRG bigWig bigWig signal of unique reads ce11 ENCSR738KPG Control ChIP-seq /worm-donors/ENCDO147AAF/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180133/'], '@type': ['Target', 'Item'], 'name': 'efl-1-celegans', 'label': 'efl-1', '@id': '/targets/efl-1-celegans/', 'title': 'efl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': '5f4c1dd1-62bd-4e09-8644-79e6f640c3ab', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF455COR/ 10051897 Kevin White, UChicago 2b9f721b10df0dbb3a52261d5e76c6bb https://www.encodeproject.org/files/ENCFF846PRG/@@download/ENCFF846PRG.bigWig released s3://encode-public/2016/10/20/1cffd992-af4f-4beb-b620-a3348b8bf6ce/ENCFF846PRG.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF823SFZ bam bam redacted alignments GRCh38 ENCSR603KDJ Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF831BMR/, /files/ENCFF005NPA/ 698174939 ENCODE Processing Pipeline 3c8467b3a5c09427562fab14714550f0 https://www.encodeproject.org/files/ENCFF823SFZ/@@download/ENCFF823SFZ.bam released s3://encode-public/2017/11/09/c1ecab81-ffe1-4962-9fe9-cd513c6596ef/ENCFF823SFZ.bam ENCODE3 GRCh38 archived ENCFF705LXV bam bam redacted unfiltered alignments GRCh38 ENCSR603KDJ Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF831BMR/, /files/ENCFF005NPA/ 917788466 ENCODE Processing Pipeline c9af1b0098b6f9e61d96208afd888a67 https://www.encodeproject.org/files/ENCFF705LXV/@@download/ENCFF705LXV.bam released s3://encode-public/2017/11/09/682647d0-8d96-47ab-a263-10f1541dfe35/ENCFF705LXV.bam ENCODE3 GRCh38 archived ENCFF232MRA bam bam redacted alignments hg19 ENCSR603KDJ Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF831BMR/, /files/ENCFF005NPA/ 697086540 ENCODE Processing Pipeline 4801a8f5d6279066c22a9ede29a1cb67 https://www.encodeproject.org/files/ENCFF232MRA/@@download/ENCFF232MRA.bam released s3://encode-public/2018/01/20/f563ba76-6b34-4a40-8b32-de0732b08b22/ENCFF232MRA.bam ENCODE3 hg19 archived ENCFF382LID bam bam redacted unfiltered alignments hg19 ENCSR603KDJ Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF831BMR/, /files/ENCFF005NPA/ 902616459 ENCODE Processing Pipeline bc573fb99702228061ea38760b8fce3b https://www.encodeproject.org/files/ENCFF382LID/@@download/ENCFF382LID.bam released s3://encode-public/2018/01/20/a29b5ea1-9fc5-49ef-8069-b1b27dee7b39/ENCFF382LID.bam ENCODE3 hg19 archived ENCFF858RUU bam bam redacted alignments GRCh38 ENCSR603KDJ Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF612FIO/, /files/ENCFF607QEZ/, /files/ENCFF110MCL/ 3958861090 ENCODE Processing Pipeline 954a99ef1ff38cbd972ae65a468f596b https://www.encodeproject.org/files/ENCFF858RUU/@@download/ENCFF858RUU.bam released s3://encode-public/2021/01/28/72b3c629-22d7-4772-b635-771df3834120/ENCFF858RUU.bam ENCODE4 v1.7.0 GRCh38 released ENCFF519ERE fastq fastq reads ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 148856334 Michael Snyder, Stanford 4b5a41e5726d35705156d5750685d7c7 https://www.encodeproject.org/files/ENCFF519ERE/@@download/ENCFF519ERE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/3fbf9a9c-fbe1-498d-9232-7c95581b309c/ENCFF519ERE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF416TIZ fastq fastq reads ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 143104096 Michael Snyder, Stanford 9de39faf38027b01d3739ed5b3e2c566 https://www.encodeproject.org/files/ENCFF416TIZ/@@download/ENCFF416TIZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f13b6645-9152-4f05-95b3-d2330d37d641/ENCFF416TIZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF550MPI bam bam alignments ce10 ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF519ERE/, /files/ENCFF416TIZ/, /files/ENCFF987UMF/ 382120222 Kevin White, UChicago a1363b56f611aad1efbd9c0ab127c1d0 https://www.encodeproject.org/files/ENCFF550MPI/@@download/ENCFF550MPI.bam released s3://encode-public/2016/10/18/d0852fe8-77f8-473b-b4e9-a70bc7f508b9/ENCFF550MPI.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF322SRT bam bam alignments ce11 ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF519ERE/, /files/ENCFF416TIZ/, /files/ENCFF586MOL/ 382524608 Kevin White, UChicago a6802a1ff7cb7c36ccaaa8df58507ba4 https://www.encodeproject.org/files/ENCFF322SRT/@@download/ENCFF322SRT.bam released s3://encode-public/2016/10/19/3357bc15-0eb8-4ce9-81b2-70bc9dddf65b/ENCFF322SRT.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF534YHD bigWig bigWig read-depth normalized signal ce10 ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF550MPI/ 9958602 Kevin White, UChicago 709ea228ca7652c9452b3f46e491a960 https://www.encodeproject.org/files/ENCFF534YHD/@@download/ENCFF534YHD.bigWig released s3://encode-public/2016/10/20/f392519c-218f-4744-8c58-86c938b375fe/ENCFF534YHD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF559QVW bigWig bigWig signal of unique reads ce10 ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF550MPI/ 10006671 Kevin White, UChicago e89f8ebc3470c1dd3308e0d849359ac0 https://www.encodeproject.org/files/ENCFF559QVW/@@download/ENCFF559QVW.bigWig released s3://encode-public/2016/10/20/1562d47e-bdbb-4bd1-af51-fc7a62a70408/ENCFF559QVW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF151WVG bigWig bigWig read-depth normalized signal ce11 ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF322SRT/ 9956675 Kevin White, UChicago 8af862c50007014ddb8e72ea0bdef127 https://www.encodeproject.org/files/ENCFF151WVG/@@download/ENCFF151WVG.bigWig released s3://encode-public/2016/10/21/3e01d982-6406-481c-9a4e-3b3c045267f7/ENCFF151WVG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF683PEY bigWig bigWig signal of unique reads ce11 ENCSR255HJY Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF322SRT/ 10005455 Kevin White, UChicago 00838f1cb0f477fe895fbb3d90199340 https://www.encodeproject.org/files/ENCFF683PEY/@@download/ENCFF683PEY.bigWig released s3://encode-public/2016/10/21/de2fab12-0b8c-4f80-9580-abd69e7057b1/ENCFF683PEY.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF136LSR fastq fastq reads ENCSR178OJR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF980EIW/ 4068870248 Michael Snyder, Stanford 4172280ce8018a847726750b7426966a https://www.encodeproject.org/files/ENCFF136LSR/@@download/ENCFF136LSR.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2022/03/14/4d7323f6-f6c5-4248-8abf-568ff3653056/ENCFF136LSR.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity, missing biosample characterization ENCFF980EIW fastq fastq reads ENCSR178OJR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF136LSR/ 4243071269 Michael Snyder, Stanford 695e030fc707c0a7bf0ce549d15add0d https://www.encodeproject.org/files/ENCFF980EIW/@@download/ENCFF980EIW.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2022/03/14/39cf8711-43c6-4d52-af16-f881dde32592/ENCFF980EIW.fastq.gz missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity, missing biosample characterization ENCFF740YTP bam bam alignments GRCh38 ENCSR178OJR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF980EIW/, /files/ENCFF136LSR/ 4345690332 ENCODE Processing Pipeline 6701b84380212c0a19b2a0d94d6bbf28 https://www.encodeproject.org/files/ENCFF740YTP/@@download/ENCFF740YTP.bam released s3://encode-public/2022/04/01/3c4067a2-fb1a-4200-9561-6fbbee896c16/ENCFF740YTP.bam ENCODE4 v1.8.0 GRCh38 released missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity, missing biosample characterization ENCFF361NPN bam bam unfiltered alignments GRCh38 ENCSR178OJR Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF980EIW/, /files/ENCFF136LSR/ 6793733874 ENCODE Processing Pipeline 32589f7f75310c18111ac4e96d9a50a0 https://www.encodeproject.org/files/ENCFF361NPN/@@download/ENCFF361NPN.bam released s3://encode-public/2022/04/01/a09a0b78-cdce-4ded-9f46-5e24992c76dd/ENCFF361NPN.bam ENCODE4 v1.8.0 GRCh38 released missing genetic modification reagents, mild to moderate bottlenecking, moderate library complexity, missing biosample characterization ENCFF549GBP fastq fastq reads ENCSR548RFU Control ChIP-seq /human-donors/ENCDO882UJI/ CL:0008030 excitatory neuron in vitro differentiated cells Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF882WED/ 3224785392 Michael Snyder, Stanford 5735e331c921721335958b4c871f4e53 https://www.encodeproject.org/files/ENCFF549GBP/@@download/ENCFF549GBP.fastq.gz Illumina NovaSeq 6000 /files/ENCFF906VRT/ released s3://encode-public/2021/12/18/765c94d4-bb03-489e-b89e-99d33cece0e9/ENCFF549GBP.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity, missing biosample characterization ENCFF882WED fastq fastq reads ENCSR548RFU Control ChIP-seq /human-donors/ENCDO882UJI/ CL:0008030 excitatory neuron in vitro differentiated cells Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF549GBP/ 3105040114 Michael Snyder, Stanford 147a917a713f426cb633b471a8622521 https://www.encodeproject.org/files/ENCFF882WED/@@download/ENCFF882WED.fastq.gz Illumina NovaSeq 6000 /files/ENCFF258VBJ/ released s3://encode-public/2021/12/18/35f5e418-7e86-47be-a88d-eef45c244c4e/ENCFF882WED.fastq.gz mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity, missing biosample characterization ENCFF799IDW bam bam alignments GRCh38 ENCSR548RFU Control ChIP-seq /human-donors/ENCDO882UJI/ CL:0008030 excitatory neuron in vitro differentiated cells Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF882WED/, /files/ENCFF549GBP/ 3824673227 ENCODE Processing Pipeline a8d27298faf99224df686520367a312d https://www.encodeproject.org/files/ENCFF799IDW/@@download/ENCFF799IDW.bam released s3://encode-public/2022/04/02/2d04e5b6-af25-426b-97fb-efaba5c1a2e5/ENCFF799IDW.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity, missing biosample characterization ENCFF692FZT bam bam unfiltered alignments GRCh38 ENCSR548RFU Control ChIP-seq /human-donors/ENCDO882UJI/ CL:0008030 excitatory neuron in vitro differentiated cells Homo sapiens TALEN insertion /genes/17/ heterozygous DNA 2022-04-13 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF882WED/, /files/ENCFF549GBP/ 5531313400 ENCODE Processing Pipeline 8e55c0d4d2cf217658164665c17d27bf https://www.encodeproject.org/files/ENCFF692FZT/@@download/ENCFF692FZT.bam released s3://encode-public/2022/04/02/7095d5a9-563d-4a26-a180-8d183a543725/ENCFF692FZT.bam ENCODE4 v1.8.0 GRCh38 released mild to moderate bottlenecking, missing genetic modification reagents, moderate library complexity, missing biosample characterization ENCFF354DMI fastq fastq reads ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 185047011 Michael Snyder, Stanford 7fd5d80e9e0ffe8b4e525a838b1fff2a https://www.encodeproject.org/files/ENCFF354DMI/@@download/ENCFF354DMI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/219a4b27-6f3d-4111-ba18-2650d8c0e7b5/ENCFF354DMI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF027YVO fastq fastq reads ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 200121068 Michael Snyder, Stanford a0e46b947358424660e55bc5d640242f https://www.encodeproject.org/files/ENCFF027YVO/@@download/ENCFF027YVO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f3ad3820-6f5f-4fac-90fc-617965b8b2d7/ENCFF027YVO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF645QTD bigWig bigWig signal of unique reads ce11 ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF842SVP/ 10034419 Kevin White, UChicago 057f788363dacf95da7a95cf21ab021c https://www.encodeproject.org/files/ENCFF645QTD/@@download/ENCFF645QTD.bigWig released s3://encode-public/2017/11/19/3d89b5c7-5a43-4a18-ba1a-ce5e35e7f2b2/ENCFF645QTD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF842SVP bam bam alignments ce11 ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF586MOL/, /files/ENCFF354DMI/, /files/ENCFF027YVO/ 463912981 Kevin White, UChicago 255daeb1bf50cb1180e91c83a6a51ebd https://www.encodeproject.org/files/ENCFF842SVP/@@download/ENCFF842SVP.bam released s3://encode-public/2017/11/19/90f99f08-4f58-465b-92d1-0b79cbf736d5/ENCFF842SVP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF773DOW bigWig bigWig signal of unique reads ce10 ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF478AVL/ 10042007 Kevin White, UChicago ddf46fe4641f75803aad5d0f5340510f https://www.encodeproject.org/files/ENCFF773DOW/@@download/ENCFF773DOW.bigWig released s3://encode-public/2017/11/19/159b98b1-4907-4cae-9a03-73a9585541af/ENCFF773DOW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF478AVL bam bam alignments ce10 ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF987UMF/, /files/ENCFF354DMI/, /files/ENCFF027YVO/ 463528205 Kevin White, UChicago 7d507aa64c6488d76223c5115f881099 https://www.encodeproject.org/files/ENCFF478AVL/@@download/ENCFF478AVL.bam released s3://encode-public/2017/11/19/f88322b3-9960-4966-9bed-c5e52f4db639/ENCFF478AVL.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF743YLI bigWig bigWig read-depth normalized signal ce10 ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF478AVL/ 9982312 Kevin White, UChicago 0afe409fcd3a31dfb0834241fb2cb684 https://www.encodeproject.org/files/ENCFF743YLI/@@download/ENCFF743YLI.bigWig released s3://encode-public/2017/11/19/d1327fa2-e3bf-4573-805e-b72921b81050/ENCFF743YLI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF541UIK bigWig bigWig read-depth normalized signal ce11 ENCSR370QTM Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF842SVP/ 9980798 Kevin White, UChicago 6480d45accbb778dbc46b1931e30e699 https://www.encodeproject.org/files/ENCFF541UIK/@@download/ENCFF541UIK.bigWig released s3://encode-public/2017/11/19/a165d344-b056-4ad4-b06a-d1473d5dc339/ENCFF541UIK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF873OXB fastq fastq reads ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 124146615 Michael Snyder, Stanford 711f3d024d107ed43538d23fd2432bc0 https://www.encodeproject.org/files/ENCFF873OXB/@@download/ENCFF873OXB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f60653d2-58cc-4776-a9ff-2c2e798f4986/ENCFF873OXB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF183PKI fastq fastq reads ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 142052914 Michael Snyder, Stanford 0b182042455b936383065173c5267e10 https://www.encodeproject.org/files/ENCFF183PKI/@@download/ENCFF183PKI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/6c0eaf15-fadd-48e0-80e4-6ce640f96a97/ENCFF183PKI.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF926NHK bam bam alignments ce10 ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF873OXB/, /files/ENCFF183PKI/, /files/ENCFF987UMF/ 310863572 Kevin White, UChicago 8e4f4fea5c32e45ba2b7814adaf180d6 https://www.encodeproject.org/files/ENCFF926NHK/@@download/ENCFF926NHK.bam released s3://encode-public/2016/10/18/16cc46fa-d686-464b-a70e-93aed1f6c444/ENCFF926NHK.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF017FBF bam bam alignments ce11 ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF873OXB/, /files/ENCFF183PKI/, /files/ENCFF586MOL/ 311133147 Kevin White, UChicago 3aaa693649421597c5b0cc309bb521b6 https://www.encodeproject.org/files/ENCFF017FBF/@@download/ENCFF017FBF.bam released s3://encode-public/2016/10/18/d6013289-531b-445d-903e-0efeaeec1d5b/ENCFF017FBF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF240JDU bigWig bigWig signal of unique reads ce10 ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF926NHK/ 10003373 Kevin White, UChicago fcd428891ae73cffb51ae723dc5320c5 https://www.encodeproject.org/files/ENCFF240JDU/@@download/ENCFF240JDU.bigWig released s3://encode-public/2016/10/20/5bbfd879-cb3b-4608-aa4f-78e950bd9f16/ENCFF240JDU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF739TZW bigWig bigWig read-depth normalized signal ce10 ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF926NHK/ 10017359 Kevin White, UChicago 5155cde6b33c1607590aab2b8d753f3e https://www.encodeproject.org/files/ENCFF739TZW/@@download/ENCFF739TZW.bigWig released s3://encode-public/2016/10/20/795df8b8-8758-4353-9f99-edcc3e71501d/ENCFF739TZW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF020DHO bigWig bigWig signal of unique reads ce11 ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF017FBF/ 9999721 Kevin White, UChicago 74a9502e2974d9599b2c4e168700fd2b https://www.encodeproject.org/files/ENCFF020DHO/@@download/ENCFF020DHO.bigWig released s3://encode-public/2016/10/20/dcc14978-86cb-4640-a537-48490f243359/ENCFF020DHO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF255FKA bigWig bigWig read-depth normalized signal ce11 ENCSR056FAL Control ChIP-seq /worm-donors/ENCDO535MGW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178987/'], '@type': ['Target', 'Item'], 'name': 'fos-1-celegans', 'label': 'fos-1', '@id': '/targets/fos-1-celegans/', 'title': 'fos-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '935345f9-7caf-4e60-bbaf-c93efa3a0f64', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF017FBF/ 10013549 Kevin White, UChicago 984775eb9008397e773b7dc88335c9f9 https://www.encodeproject.org/files/ENCFF255FKA/@@download/ENCFF255FKA.bigWig released s3://encode-public/2016/10/20/d966437d-b586-4a93-a130-fbfe1b626dd4/ENCFF255FKA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF773XYG fastq fastq reads ENCSR719EHD Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 85566625 Michael Snyder, Stanford 8af410009a2aa7b3fa71d3d63c1f335e https://www.encodeproject.org/files/ENCFF773XYG/@@download/ENCFF773XYG.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/18/5ea00a76-1a6f-4c82-abce-71d3bdb3d5f6/ENCFF773XYG.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF198WGF fastq fastq reads ENCSR719EHD Control ChIP-seq /worm-donors/ENCDO388OAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180357/'], '@type': ['Target', 'Item'], 'name': 'pha-4-celegans', 'label': 'pha-4', '@id': '/targets/pha-4-celegans/', 'title': 'pha-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd355749b-2f31-49ac-a407-08e4a01f6005', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 34 single-ended 123812925 Michael Snyder, Stanford ede06535fa14f78d2c1b80675821c326 https://www.encodeproject.org/files/ENCFF198WGF/@@download/ENCFF198WGF.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/18/f7a24962-89e6-473e-baef-9c231013c00b/ENCFF198WGF.fastq.gz missing genetic modification reagents, missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF800GRD bam bam unfiltered alignments hg19 ENCSR524VNV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF737ELZ/ 1889015768 ENCODE Processing Pipeline 0f66893ab74feb93b8f36b0bcbd45b75 https://www.encodeproject.org/files/ENCFF800GRD/@@download/ENCFF800GRD.bam released s3://encode-public/2018/02/22/6f5c7f32-e75f-477d-8bcd-9dbfc591a79a/ENCFF800GRD.bam ENCODE3 hg19 archived ENCFF737ELZ fastq fastq reads ENCSR524VNV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 single-ended 1743842555 Richard Myers, HAIB ae13e5a09c424d50fcc8776f2e789ffc SRA:SRR5338924 https://www.encodeproject.org/files/ENCFF737ELZ/@@download/ENCFF737ELZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/04/06/4ae20d8d-3ebd-4c99-88df-5cc23d5e8b58/ENCFF737ELZ.fastq.gz ENCFF969DYI bam bam alignments hg19 ENCSR524VNV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF807MUK/, /files/ENCFF737ELZ/ 1456957739 ENCODE Processing Pipeline b79fae633d3a09cc7cf044f9aefafdc3 https://www.encodeproject.org/files/ENCFF969DYI/@@download/ENCFF969DYI.bam released s3://encode-public/2015/11/17/5649a60b-cf01-4974-863d-b3b9436f13f3/ENCFF969DYI.bam ENCODE3 hg19 archived ENCFF456TAB bam bam unfiltered alignments GRCh38 ENCSR524VNV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF737ELZ/ 1896527175 ENCODE Processing Pipeline 0ec7d254c61736f0cb342eb84708eda6 https://www.encodeproject.org/files/ENCFF456TAB/@@download/ENCFF456TAB.bam released s3://encode-public/2016/05/06/63f06d13-51b1-4ea8-88de-4ee8ea46d7bc/ENCFF456TAB.bam ENCODE3 GRCh38 archived ENCFF372RRO bam bam alignments GRCh38 ENCSR524VNV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF643CGH/, /files/ENCFF737ELZ/ 1457093502 ENCODE Processing Pipeline c6eeee558e7d843392518ce536f9e4f3 https://www.encodeproject.org/files/ENCFF372RRO/@@download/ENCFF372RRO.bam released s3://encode-public/2016/05/06/f43d619d-d061-4c53-9e5c-f55e01af7a0d/ENCFF372RRO.bam ENCODE3 GRCh38 archived ENCFF360KLV bam bam alignments GRCh38 ENCSR524VNV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF737ELZ/ 1526044206 ENCODE Processing Pipeline 34da025053fc5e9fbcfddcea91245e69 https://www.encodeproject.org/files/ENCFF360KLV/@@download/ENCFF360KLV.bam released s3://encode-public/2020/11/05/842e6dbe-94ef-4775-a45a-68bbf86aa9ae/ENCFF360KLV.bam ENCODE4 v1.6.1 GRCh38 released ENCFF166MNB bam bam unfiltered alignments GRCh38 ENCSR524VNV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 100-500 10 10_2 50 /files/ENCFF110MCL/, /files/ENCFF737ELZ/ 1878674251 ENCODE Processing Pipeline bbb7aac999a82d14a0fdfcf3b5f5d2a3 https://www.encodeproject.org/files/ENCFF166MNB/@@download/ENCFF166MNB.bam released s3://encode-public/2020/11/05/fccf60e1-3f46-4d85-aaed-f40af5b315d4/ENCFF166MNB.bam ENCODE4 v1.6.1 GRCh38 released ENCFF629KCM fastq fastq reads ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 198327603 Michael Snyder, Stanford 121544d711181f303077aa33bdcfca47 https://www.encodeproject.org/files/ENCFF629KCM/@@download/ENCFF629KCM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/5a588563-5521-41d4-b87b-4332499a40f4/ENCFF629KCM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF232AAO fastq fastq reads ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 158029993 Michael Snyder, Stanford 3f13fd74f6103c5a1896d511da1f2cf5 https://www.encodeproject.org/files/ENCFF232AAO/@@download/ENCFF232AAO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/4c7c9827-524a-40a3-8e0d-86991542ed0b/ENCFF232AAO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF333UEP bam bam alignments ce10 ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF629KCM/, /files/ENCFF232AAO/, /files/ENCFF987UMF/ 409438730 Kevin White, UChicago 42012c8d9d580786d921cb117babb371 https://www.encodeproject.org/files/ENCFF333UEP/@@download/ENCFF333UEP.bam released s3://encode-public/2017/04/27/98582749-e8e1-44ef-a9d5-0e7d52bde0ed/ENCFF333UEP.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF655BWJ bam bam alignments ce11 ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF629KCM/, /files/ENCFF232AAO/, /files/ENCFF586MOL/ 409776122 Kevin White, UChicago 05351b4cf13712e258c3099d1ac64d00 https://www.encodeproject.org/files/ENCFF655BWJ/@@download/ENCFF655BWJ.bam released s3://encode-public/2017/04/27/ccc7a925-37eb-42e2-8e90-4d42fc53d28b/ENCFF655BWJ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF365JXM bigWig bigWig read-depth normalized signal ce11 ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF655BWJ/ 10055020 Kevin White, UChicago 23570a7c019c4b1b3a4d1b54db1ab9b5 https://www.encodeproject.org/files/ENCFF365JXM/@@download/ENCFF365JXM.bigWig released s3://encode-public/2017/05/05/f12423d4-6d7c-406b-885c-e6b12be6d468/ENCFF365JXM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF225XBE bigWig bigWig signal of unique reads ce10 ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF333UEP/ 10048728 Kevin White, UChicago 5e94ccea60d82bf82e1d04d5d7a15b8a https://www.encodeproject.org/files/ENCFF225XBE/@@download/ENCFF225XBE.bigWig released s3://encode-public/2017/05/05/235be50b-067d-4883-9b3f-0b95ae8c1660/ENCFF225XBE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF802UDV bigWig bigWig read-depth normalized signal ce10 ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF333UEP/ 10057560 Kevin White, UChicago 6511250e06106ad1a6a1a3cb1325df1d https://www.encodeproject.org/files/ENCFF802UDV/@@download/ENCFF802UDV.bigWig released s3://encode-public/2017/05/05/0aa60960-5e8e-4e08-b882-bab15f220541/ENCFF802UDV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF866FRB bigWig bigWig signal of unique reads ce11 ENCSR534YJS Control ChIP-seq /worm-donors/ENCDO957CRR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180942/'], '@type': ['Target', 'Item'], 'name': 'mdl-1-celegans', 'label': 'mdl-1', '@id': '/targets/mdl-1-celegans/', 'title': 'mdl-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e0770b7e-4402-4f5c-8086-e1afd063fb47', 'status': 'released'} DNA 2017-11-28 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF655BWJ/ 10044372 Kevin White, UChicago d89a000c99cbf50649b4ce4da8277086 https://www.encodeproject.org/files/ENCFF866FRB/@@download/ENCFF866FRB.bigWig released s3://encode-public/2017/05/05/5eba3c4d-256d-4cea-9cb8-b99d736b44d2/ENCFF866FRB.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF283JND fastq fastq reads ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 116540696 Michael Snyder, Stanford 4daf7a882710cef30e1c0203902a47f9 https://www.encodeproject.org/files/ENCFF283JND/@@download/ENCFF283JND.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/efc892dc-e666-4050-9657-1b3638b7fc16/ENCFF283JND.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF402OQO fastq fastq reads ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 197810788 Michael Snyder, Stanford e936a0b470f4b56d65313b0716c1c0e7 https://www.encodeproject.org/files/ENCFF402OQO/@@download/ENCFF402OQO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d808e8d1-5e70-4e6e-a42e-c88a483341a7/ENCFF402OQO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF201IOI bigWig bigWig read-depth normalized signal ce10 ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF704MFQ/ 10049902 Kevin White, UChicago a58006da821c4037dd41699f0ff058c2 https://www.encodeproject.org/files/ENCFF201IOI/@@download/ENCFF201IOI.bigWig released s3://encode-public/2016/10/20/7c29015c-4247-4906-8f36-0e36af5a6fcb/ENCFF201IOI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF562WHO bigWig bigWig signal of unique reads ce10 ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF704MFQ/ 10052469 Kevin White, UChicago 6307667e7d230807bc6fc869dd66f6a6 https://www.encodeproject.org/files/ENCFF562WHO/@@download/ENCFF562WHO.bigWig released s3://encode-public/2016/10/20/1e4e2a9f-6903-4555-b9fc-205ca6d23e22/ENCFF562WHO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF527XGC fastq fastq reads ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 33 single-ended 194408549 Michael Snyder, Stanford e016c7d369586c4e88135a680c65b910 https://www.encodeproject.org/files/ENCFF527XGC/@@download/ENCFF527XGC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/b293b42b-dd6c-4bd9-971b-fe6f06f723d5/ENCFF527XGC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF076UZD fastq fastq reads ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 33 single-ended 114169131 Michael Snyder, Stanford 4c6d01975bb38c579d0e6862128b60f8 https://www.encodeproject.org/files/ENCFF076UZD/@@download/ENCFF076UZD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/936e2a73-fb7f-4e08-a951-727b43cb351c/ENCFF076UZD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF704MFQ bam bam alignments ce10 ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF402OQO/, /files/ENCFF283JND/, /files/ENCFF987UMF/ 420865788 Kevin White, UChicago ce735f0c9b6a868ebaf0594b0854b9d9 https://www.encodeproject.org/files/ENCFF704MFQ/@@download/ENCFF704MFQ.bam released s3://encode-public/2017/12/21/6a764c35-9be9-4a65-b4fe-8252dfc5efba/ENCFF704MFQ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF806OQR bam bam alignments ce11 ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF402OQO/, /files/ENCFF283JND/, /files/ENCFF586MOL/ 421383489 Kevin White, UChicago 6012657d4da112f0ac8b3dd7510a9e2b https://www.encodeproject.org/files/ENCFF806OQR/@@download/ENCFF806OQR.bam released s3://encode-public/2017/12/21/db5a4165-b059-4b9b-81f0-ad8e39b444d8/ENCFF806OQR.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF754EDC bigWig bigWig read-depth normalized signal ce11 ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF806OQR/ 10050095 Kevin White, UChicago 9870a19c1901d4702d6a5a5146ba049f https://www.encodeproject.org/files/ENCFF754EDC/@@download/ENCFF754EDC.bigWig released s3://encode-public/2017/12/21/ea3a9b18-becb-497b-98f3-c809476f82d7/ENCFF754EDC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF901RFN bigWig bigWig signal of unique reads ce11 ENCSR201EHF Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF806OQR/ 10052007 Kevin White, UChicago 49904654ded6212478fe9414fd34c0e9 https://www.encodeproject.org/files/ENCFF901RFN/@@download/ENCFF901RFN.bigWig released s3://encode-public/2017/12/21/3b948dde-d103-4ebe-b163-f1bc13ecfebc/ENCFF901RFN.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF813MGR bam bam unfiltered alignments hg19 ENCSR240FKS Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF820XYY/ 1665680501 ENCODE Processing Pipeline a0ca038c416b4e4c31be56dace96a5d1 https://www.encodeproject.org/files/ENCFF813MGR/@@download/ENCFF813MGR.bam released s3://encode-public/2018/02/22/11743409-fa06-45fb-bbd4-486684cc2ef5/ENCFF813MGR.bam ENCODE3 hg19 archived ENCFF820XYY fastq fastq reads ENCSR240FKS Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 single-ended 1541225333 Richard Myers, HAIB 26607e330324dbcd17c863e976aef95e SRA:SRR5331468 https://www.encodeproject.org/files/ENCFF820XYY/@@download/ENCFF820XYY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/12/17/e4c6f0ee-04a0-4bc5-9df1-204b36741f76/ENCFF820XYY.fastq.gz ENCFF925QJE bam bam alignments hg19 ENCSR240FKS Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF807MUK/, /files/ENCFF820XYY/ 1239299602 ENCODE Processing Pipeline 6749a62054b7962ecfd143bef383f156 https://www.encodeproject.org/files/ENCFF925QJE/@@download/ENCFF925QJE.bam released s3://encode-public/2015/11/17/d0ca4c88-7ca0-4150-8797-1652f9eccca0/ENCFF925QJE.bam ENCODE3 hg19 archived ENCFF368ULS bam bam unfiltered alignments GRCh38 ENCSR240FKS Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF820XYY/ 1670536397 ENCODE Processing Pipeline 1e99b4df68861ba53e1e9d92ea24a03c https://www.encodeproject.org/files/ENCFF368ULS/@@download/ENCFF368ULS.bam released s3://encode-public/2016/05/06/d9c60d72-e3c5-48c6-aaf0-f8b0404e2fa2/ENCFF368ULS.bam ENCODE3 GRCh38 archived ENCFF715ECN bam bam alignments GRCh38 ENCSR240FKS Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF643CGH/, /files/ENCFF820XYY/ 1239514213 ENCODE Processing Pipeline fb5f74963b92c87c9d7427203f78469e https://www.encodeproject.org/files/ENCFF715ECN/@@download/ENCFF715ECN.bam released s3://encode-public/2016/05/06/dfbc7936-ca7b-468d-8e0d-b693a2154bb6/ENCFF715ECN.bam ENCODE3 GRCh38 archived ENCFF196GRM bam bam unfiltered alignments GRCh38 ENCSR240FKS Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF820XYY/, /files/ENCFF110MCL/ 1653369198 ENCODE Processing Pipeline 91d9af24fe21cb97f30632888ae4469e https://www.encodeproject.org/files/ENCFF196GRM/@@download/ENCFF196GRM.bam released s3://encode-public/2020/11/05/00d1af4b-92c5-4ce3-90e0-2d76e8d3703c/ENCFF196GRM.bam ENCODE4 v1.6.1 GRCh38 released ENCFF692ZQU bam bam alignments GRCh38 ENCSR240FKS Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (Bioruptor Twin) 100-500 10 10_1 50 /files/ENCFF820XYY/, /files/ENCFF110MCL/ 1314241666 ENCODE Processing Pipeline 6afafb506dbb0513a1355ac3bcb6fabd https://www.encodeproject.org/files/ENCFF692ZQU/@@download/ENCFF692ZQU.bam released s3://encode-public/2020/11/05/9ef1845a-926d-43b3-b905-e15966210ef4/ENCFF692ZQU.bam ENCODE4 v1.6.1 GRCh38 released ENCFF630LNY fastq fastq reads ENCSR131VHM Control ChIP-seq /worm-donors/ENCDO833YGH/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174705/'], '@type': ['Target', 'Item'], 'name': 'pqm-1-celegans', 'label': 'pqm-1', '@id': '/targets/pqm-1-celegans/', 'title': 'pqm-1 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'c971a8fa-435a-49d3-8db0-2d6a147c186b', 'status': 'released'} DNA 2018-03-09 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 130352588 Michael Snyder, Stanford 3fe478cd0f387fbf98cbd99422fa1a1e https://www.encodeproject.org/files/ENCFF630LNY/@@download/ENCFF630LNY.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2017/04/25/0a8f5e31-10a1-4038-a5ee-411ffe4e3dd2/ENCFF630LNY.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF162KHC fastq fastq reads ENCSR086KKZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 2391625126 Richard Myers, HAIB 784475482531a6494ec48b9d830a2a56 SRA:SRR14104067 https://www.encodeproject.org/files/ENCFF162KHC/@@download/ENCFF162KHC.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/02/06/db608183-29a7-4be6-a684-5e70bf5f9fe8/ENCFF162KHC.fastq.gz mild to moderate bottlenecking ENCFF204JIK bam bam alignments GRCh38 ENCSR086KKZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF162KHC/ 1403272241 ENCODE Processing Pipeline 10ef22015b3b1c4319ba10af898fd2c9 https://www.encodeproject.org/files/ENCFF204JIK/@@download/ENCFF204JIK.bam released s3://encode-public/2020/04/20/076a3498-c68c-4534-ae93-b7cbedf74970/ENCFF204JIK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF569IKG bam bam unfiltered alignments GRCh38 ENCSR086KKZ Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF162KHC/ 2427221000 ENCODE Processing Pipeline 5bafd5daef2702eb7779bb75d279eb7c https://www.encodeproject.org/files/ENCFF569IKG/@@download/ENCFF569IKG.bam released s3://encode-public/2020/04/20/f764b297-174b-4c4c-a987-98a477722cb6/ENCFF569IKG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF890NBB fastq fastq reads ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF261WQL/ 2317929094 Michael Snyder, Stanford fd5796d08a882235f69e9ef71687219d SRA:SRR6213988 https://www.encodeproject.org/files/ENCFF890NBB/@@download/ENCFF890NBB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/dfbe85b1-eb41-4a32-b8db-52749c7186ff/ENCFF890NBB.fastq.gz mild to moderate bottlenecking ENCFF261WQL fastq fastq reads ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF890NBB/ 2662281146 Michael Snyder, Stanford 5b97c72e41d1b533b60bcd7f8cc67744 SRA:SRR6213988 https://www.encodeproject.org/files/ENCFF261WQL/@@download/ENCFF261WQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/04/1ce1234f-8dd1-4cc8-a6be-8bc60da5d701/ENCFF261WQL.fastq.gz mild to moderate bottlenecking ENCFF381HBZ bam bam alignments hg19 ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF890NBB/, /files/ENCFF807MUK/, /files/ENCFF261WQL/ 3949772022 ENCODE Processing Pipeline 472b55c6ac07ca30e35ea60acf18f370 https://www.encodeproject.org/files/ENCFF381HBZ/@@download/ENCFF381HBZ.bam released s3://encode-public/2017/03/17/741f9ae1-a235-4e7f-9875-3c829e0f39b2/ENCFF381HBZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF889SSK bam bam unfiltered alignments GRCh38 ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF890NBB/, /files/ENCFF643CGH/, /files/ENCFF261WQL/ 4876461569 ENCODE Processing Pipeline 82209a04359a6f531c715beaf1ca7315 https://www.encodeproject.org/files/ENCFF889SSK/@@download/ENCFF889SSK.bam released s3://encode-public/2017/03/17/383b2f93-1cce-4ccf-9f84-883d3bc02bcd/ENCFF889SSK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF312FVO bam bam unfiltered alignments hg19 ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF890NBB/, /files/ENCFF807MUK/, /files/ENCFF261WQL/ 4868542589 ENCODE Processing Pipeline 03a46c2badb298bf1627244476686871 https://www.encodeproject.org/files/ENCFF312FVO/@@download/ENCFF312FVO.bam released s3://encode-public/2017/03/17/d29eae5d-1ee1-41cb-b8dc-133c2bf81ac0/ENCFF312FVO.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF289LPR bam bam alignments GRCh38 ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 101 /files/ENCFF890NBB/, /files/ENCFF643CGH/, /files/ENCFF261WQL/ 3955365970 ENCODE Processing Pipeline 38b6779ede774f2941112746cde89249 https://www.encodeproject.org/files/ENCFF289LPR/@@download/ENCFF289LPR.bam released s3://encode-public/2017/03/17/8fd37def-2f9e-4238-9cdb-68c5679512e3/ENCFF289LPR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF948AVR bam bam alignments GRCh38 ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF890NBB/, /files/ENCFF261WQL/ 3854256003 ENCODE Processing Pipeline 31b5edb6b847860a21fa1176956d26e8 https://www.encodeproject.org/files/ENCFF948AVR/@@download/ENCFF948AVR.bam released s3://encode-public/2020/06/02/6bbb2f50-8cee-48eb-8598-6c1eab3a66eb/ENCFF948AVR.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF586CGY bam bam unfiltered alignments GRCh38 ENCSR821NQM Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0004264 lower leg skin tissue Homo sapiens DNA 2017-03-20 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF890NBB/, /files/ENCFF261WQL/ 4870630867 ENCODE Processing Pipeline 5a01e22b1a67726634e8b41a81126f0e https://www.encodeproject.org/files/ENCFF586CGY/@@download/ENCFF586CGY.bam released s3://encode-public/2020/06/02/83bb8e8c-cf9f-4ba1-b768-046bc5923f96/ENCFF586CGY.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF077WIN fastq fastq reads ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 185329033 Michael Snyder, Stanford 73d70bc3ec83b94fdcea1a7f97cf73c9 https://www.encodeproject.org/files/ENCFF077WIN/@@download/ENCFF077WIN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/bbd53887-1e8f-41a1-a7fe-84b7cd6f0f9e/ENCFF077WIN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF305IFA fastq fastq reads ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 97392911 Michael Snyder, Stanford 4b4cda3f948f46c1bc72a7cbcfd20b54 https://www.encodeproject.org/files/ENCFF305IFA/@@download/ENCFF305IFA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/dd350bb8-75b1-49d4-8c4c-1a8f527b4596/ENCFF305IFA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF165BLX bam bam alignments ce10 ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF305IFA/, /files/ENCFF077WIN/, /files/ENCFF987UMF/ 379134892 Kevin White, UChicago 847698c8b21630b6ff50da09261eff97 https://www.encodeproject.org/files/ENCFF165BLX/@@download/ENCFF165BLX.bam released s3://encode-public/2016/10/18/1a4da199-4084-40cc-aa96-3ca6d6030b09/ENCFF165BLX.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF479BHX bam bam alignments ce11 ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF305IFA/, /files/ENCFF077WIN/, /files/ENCFF586MOL/ 379574359 Kevin White, UChicago 0886921683be7cbcbcc100d83d84e981 https://www.encodeproject.org/files/ENCFF479BHX/@@download/ENCFF479BHX.bam released s3://encode-public/2016/10/18/408d19b2-3501-4927-9a68-7ae926716e6c/ENCFF479BHX.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF979UTF bigWig bigWig signal of unique reads ce10 ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF165BLX/ 10049467 Kevin White, UChicago fa643b06699239679c08442764b30804 https://www.encodeproject.org/files/ENCFF979UTF/@@download/ENCFF979UTF.bigWig released s3://encode-public/2016/10/20/a3c500e6-b5f5-4846-9330-0a4e9cde49da/ENCFF979UTF.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF362GYY bigWig bigWig read-depth normalized signal ce10 ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF165BLX/ 10038182 Kevin White, UChicago 9a3c0a7cf46ff88543ab9c5d0134ac62 https://www.encodeproject.org/files/ENCFF362GYY/@@download/ENCFF362GYY.bigWig released s3://encode-public/2016/10/20/c7a2a5fb-8ee3-44c5-a8c9-f1c8632be41b/ENCFF362GYY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF213BBT bigWig bigWig signal of unique reads ce11 ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF479BHX/ 10046671 Kevin White, UChicago 2316119f6453bf7fb276354b2f3ca4b4 https://www.encodeproject.org/files/ENCFF213BBT/@@download/ENCFF213BBT.bigWig released s3://encode-public/2016/10/20/f046135c-60d1-429c-8031-f35baa390c9c/ENCFF213BBT.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF633KEF bigWig bigWig read-depth normalized signal ce11 ENCSR787UFX Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF479BHX/ 10030306 Kevin White, UChicago 319490c97706206027bdf18d2e1139a7 https://www.encodeproject.org/files/ENCFF633KEF/@@download/ENCFF633KEF.bigWig released s3://encode-public/2016/10/20/8bf18585-c14b-4255-8784-f70321f35317/ENCFF633KEF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF835SPN fastq fastq reads ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 233909990 Michael Snyder, Stanford 3a8852c8d446f341704952cb08abf88e https://www.encodeproject.org/files/ENCFF835SPN/@@download/ENCFF835SPN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/a9a311a2-2de6-46f6-a630-89e4211275a6/ENCFF835SPN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF587XON fastq fastq reads ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 191362542 Michael Snyder, Stanford 667a31cf9ddceb3cf5034628042217dd https://www.encodeproject.org/files/ENCFF587XON/@@download/ENCFF587XON.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4a86c402-4e2c-4efb-a307-493c18e222a7/ENCFF587XON.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF216KGS bam bam alignments ce10 ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF835SPN/, /files/ENCFF587XON/, /files/ENCFF987UMF/ 509597923 Kevin White, UChicago 53186d042711a6d70bda7f7f32fef6fc https://www.encodeproject.org/files/ENCFF216KGS/@@download/ENCFF216KGS.bam released s3://encode-public/2016/10/18/4acb9abe-0542-4fc8-8226-4e3c580205cd/ENCFF216KGS.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF145DUU bam bam alignments ce11 ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF835SPN/, /files/ENCFF587XON/, /files/ENCFF586MOL/ 510033116 Kevin White, UChicago cab8cd62ceff49914e4459cd48aec2b5 https://www.encodeproject.org/files/ENCFF145DUU/@@download/ENCFF145DUU.bam released s3://encode-public/2016/10/18/bce52824-1d6a-41c0-b313-527d2cc7f936/ENCFF145DUU.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF906DRK bigWig bigWig signal of unique reads ce10 ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF216KGS/ 10048832 Kevin White, UChicago 353b9910ca62987fc2e3019a34e13f2e https://www.encodeproject.org/files/ENCFF906DRK/@@download/ENCFF906DRK.bigWig released s3://encode-public/2016/10/20/c4e875b7-777b-47c4-a727-21bff8f4f2a7/ENCFF906DRK.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF098JIC bigWig bigWig read-depth normalized signal ce10 ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF216KGS/ 9981786 Kevin White, UChicago f135bc8c76e138f2f18b4fcdc0c619c2 https://www.encodeproject.org/files/ENCFF098JIC/@@download/ENCFF098JIC.bigWig released s3://encode-public/2016/10/20/944aa81b-d442-44e0-9110-8a44bacf1fc6/ENCFF098JIC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF533MQE bigWig bigWig signal of unique reads ce11 ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF145DUU/ 10045041 Kevin White, UChicago a27534180ace939d3f003d749785ba0f https://www.encodeproject.org/files/ENCFF533MQE/@@download/ENCFF533MQE.bigWig released s3://encode-public/2016/10/20/341c0633-b5ff-49fa-a866-dbbde71a18aa/ENCFF533MQE.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF738LKI bigWig bigWig read-depth normalized signal ce11 ENCSR779YVP Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF145DUU/ 9980959 Kevin White, UChicago 5c87d843934137a9a81faff41b6bd350 https://www.encodeproject.org/files/ENCFF738LKI/@@download/ENCFF738LKI.bigWig released s3://encode-public/2016/10/20/f86ca260-b9ca-4c2f-a260-181cf00ac227/ENCFF738LKI.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF995UDY fastq fastq reads ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 226633449 Michael Snyder, Stanford fba868d507980b2f44244d11a8b13ccf https://www.encodeproject.org/files/ENCFF995UDY/@@download/ENCFF995UDY.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/5e6d0fa1-5cc1-4ed1-9911-5965421b7082/ENCFF995UDY.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF079XOF fastq fastq reads ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 253353223 Michael Snyder, Stanford 2b71c32d658a1ecaa15f864affdebc4a https://www.encodeproject.org/files/ENCFF079XOF/@@download/ENCFF079XOF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/d4be63f3-1fe2-4c49-a8fb-ea9fd31d14dc/ENCFF079XOF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF983OVF bam bam alignments ce10 ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF079XOF/, /files/ENCFF995UDY/, /files/ENCFF987UMF/ 627276310 Kevin White, UChicago 85d2cebc772dfe4331a78ab1fcd16563 https://www.encodeproject.org/files/ENCFF983OVF/@@download/ENCFF983OVF.bam released s3://encode-public/2016/10/18/70443dbd-73f6-4b21-9de1-09348b110e95/ENCFF983OVF.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF730DVW bam bam alignments ce11 ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF079XOF/, /files/ENCFF995UDY/, /files/ENCFF586MOL/ 627921895 Kevin White, UChicago bedca3aeb78413081605d9e6abdcf5bd https://www.encodeproject.org/files/ENCFF730DVW/@@download/ENCFF730DVW.bam released s3://encode-public/2016/10/19/085825e0-8db7-444c-9c76-25b0ee550f68/ENCFF730DVW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF914LEB bigWig bigWig signal of unique reads ce10 ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF983OVF/ 9970717 Kevin White, UChicago f62ebe93eccffd5f869efd4cbcec4e9b https://www.encodeproject.org/files/ENCFF914LEB/@@download/ENCFF914LEB.bigWig released s3://encode-public/2016/10/20/232b3430-538c-46c8-92e7-1d451f881cf5/ENCFF914LEB.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF232ATR bigWig bigWig read-depth normalized signal ce10 ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF983OVF/ 9982975 Kevin White, UChicago edbe8e71c1b59a758877875b2d3d0f25 https://www.encodeproject.org/files/ENCFF232ATR/@@download/ENCFF232ATR.bigWig released s3://encode-public/2016/10/20/7966bf7b-1211-4a08-b273-43ced4ab3271/ENCFF232ATR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF434PAD bigWig bigWig read-depth normalized signal ce11 ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF730DVW/ 9989237 Kevin White, UChicago 9b2700920570c492df83381fd6029f2d https://www.encodeproject.org/files/ENCFF434PAD/@@download/ENCFF434PAD.bigWig released s3://encode-public/2016/10/21/7b2f44f6-6d46-4d59-a110-189218f17727/ENCFF434PAD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF683YDQ bigWig bigWig signal of unique reads ce11 ENCSR744IWP Control ChIP-seq /worm-donors/ENCDO743RQD/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177794/'], '@type': ['Target', 'Item'], 'name': 'elt-1-celegans', 'label': 'elt-1', '@id': '/targets/elt-1-celegans/', 'title': 'elt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '51ef839b-23f5-4a7b-a52d-e8c91873af9d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF730DVW/ 9969323 Kevin White, UChicago fdcffff449adc5800df2e3d962e7dfbc https://www.encodeproject.org/files/ENCFF683YDQ/@@download/ENCFF683YDQ.bigWig released s3://encode-public/2016/10/21/073fe4b9-d7b5-482f-8164-e0fc4df58e6b/ENCFF683YDQ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF690IDO fastq fastq reads ENCSR426HJS Control ChIP-seq /fly-donors/ENCDO019YKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33608/'], '@type': ['Target', 'Item'], 'name': 'slp2-dmelanogaster', 'label': 'slp2', '@id': '/targets/slp2-dmelanogaster/', 'title': 'slp2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba5682e3-a75d-4558-b69e-bed3470e5dd2', 'status': 'released'} dm3 2L 3829645 3851242 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 498335429 Kevin White, UChicago 6c1e66aa345cb8d0379c2d68ae87d60e https://www.encodeproject.org/files/ENCFF690IDO/@@download/ENCFF690IDO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/6f37e52f-d386-432a-862a-e07f923cbfb2/ENCFF690IDO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF211VGY bam bam alignments dm3 ENCSR426HJS Control ChIP-seq /fly-donors/ENCDO019YKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33608/'], '@type': ['Target', 'Item'], 'name': 'slp2-dmelanogaster', 'label': 'slp2', '@id': '/targets/slp2-dmelanogaster/', 'title': 'slp2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba5682e3-a75d-4558-b69e-bed3470e5dd2', 'status': 'released'} dm3 2L 3829645 3851242 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF690IDO/ 740330334 Kevin White, UChicago e5c07e8bfc95f2d70d80435d7b576421 https://www.encodeproject.org/files/ENCFF211VGY/@@download/ENCFF211VGY.bam released s3://encode-public/2015/08/03/23771d6d-523d-4540-9723-1e322f1a4750/ENCFF211VGY.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF675SBZ bigWig bigWig read-depth normalized signal dm3 ENCSR426HJS Control ChIP-seq /fly-donors/ENCDO019YKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33608/'], '@type': ['Target', 'Item'], 'name': 'slp2-dmelanogaster', 'label': 'slp2', '@id': '/targets/slp2-dmelanogaster/', 'title': 'slp2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba5682e3-a75d-4558-b69e-bed3470e5dd2', 'status': 'released'} dm3 2L 3829645 3851242 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF211VGY/ 15382998 Kevin White, UChicago 896ccab716f85062f007f937b05f3227 https://www.encodeproject.org/files/ENCFF675SBZ/@@download/ENCFF675SBZ.bigWig released s3://encode-public/2015/10/05/def45080-9d34-47e3-9146-732bca0ab65a/ENCFF675SBZ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF904TVX bigWig bigWig signal of unique reads dm3 ENCSR426HJS Control ChIP-seq /fly-donors/ENCDO019YKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33608/'], '@type': ['Target', 'Item'], 'name': 'slp2-dmelanogaster', 'label': 'slp2', '@id': '/targets/slp2-dmelanogaster/', 'title': 'slp2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba5682e3-a75d-4558-b69e-bed3470e5dd2', 'status': 'released'} dm3 2L 3829645 3851242 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF211VGY/ 15326512 Kevin White, UChicago 76677a636a53cecaa68ad2a6cf1ee313 https://www.encodeproject.org/files/ENCFF904TVX/@@download/ENCFF904TVX.bigWig released s3://encode-public/2015/10/05/e35d2074-a983-40ae-acf7-f3d4f2971917/ENCFF904TVX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF801GQJ bam bam alignments dm6 ENCSR426HJS Control ChIP-seq /fly-donors/ENCDO019YKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33608/'], '@type': ['Target', 'Item'], 'name': 'slp2-dmelanogaster', 'label': 'slp2', '@id': '/targets/slp2-dmelanogaster/', 'title': 'slp2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba5682e3-a75d-4558-b69e-bed3470e5dd2', 'status': 'released'} dm3 2L 3829645 3851242 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF690IDO/ 736939217 Kevin White, UChicago 8aa79538087cf7b05b157e164e5f6528 https://www.encodeproject.org/files/ENCFF801GQJ/@@download/ENCFF801GQJ.bam released s3://encode-public/2016/04/22/7b8bd548-0bff-4ba3-a713-0042cbb671f0/ENCFF801GQJ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF227WET bigWig bigWig read-depth normalized signal dm6 ENCSR426HJS Control ChIP-seq /fly-donors/ENCDO019YKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33608/'], '@type': ['Target', 'Item'], 'name': 'slp2-dmelanogaster', 'label': 'slp2', '@id': '/targets/slp2-dmelanogaster/', 'title': 'slp2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba5682e3-a75d-4558-b69e-bed3470e5dd2', 'status': 'released'} dm3 2L 3829645 3851242 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF801GQJ/ 17506258 Kevin White, UChicago e5210837a28ff6d22920c43518b9443a https://www.encodeproject.org/files/ENCFF227WET/@@download/ENCFF227WET.bigWig released s3://encode-public/2016/06/21/6b59d6da-50ec-4e60-93be-3f3722cad30c/ENCFF227WET.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF257FYI bigWig bigWig signal of unique reads dm6 ENCSR426HJS Control ChIP-seq /fly-donors/ENCDO019YKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33608/'], '@type': ['Target', 'Item'], 'name': 'slp2-dmelanogaster', 'label': 'slp2', '@id': '/targets/slp2-dmelanogaster/', 'title': 'slp2 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'ba5682e3-a75d-4558-b69e-bed3470e5dd2', 'status': 'released'} dm3 2L 3829645 3851242 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF801GQJ/ 17435155 Kevin White, UChicago eb17af5b9b967e7b1ccd099455c3ea27 https://www.encodeproject.org/files/ENCFF257FYI/@@download/ENCFF257FYI.bigWig released s3://encode-public/2016/06/21/fc1b8b50-03b2-45d7-8d82-5bedccab2032/ENCFF257FYI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF299XGE fastq fastq reads ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 34 single-ended 124870672 Michael Snyder, Stanford 50c766892748b7cf81fc659b9e3b4125 https://www.encodeproject.org/files/ENCFF299XGE/@@download/ENCFF299XGE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/02/03/3140e0b4-6309-4be8-a44c-fbdf88f22438/ENCFF299XGE.fastq.gz mixed read lengths, inconsistent platforms ENCFF848VQD fastq fastq reads ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 31 single-ended 171425187 Kevin White, UChicago a68d184a7dd1b5b8e54557e16224d7e5 https://www.encodeproject.org/files/ENCFF848VQD/@@download/ENCFF848VQD.fastq.gz Illumina Genome Analyzer /files/ENCFF990OUB/, /files/ENCFF063ZRM/, /files/ENCFF280KYG/, /files/ENCFF425LNJ/ released s3://encode-public/2018/01/09/ea3c4af7-87ba-46b0-aa26-4570b8f1265f/ENCFF848VQD.fastq.gz mixed read lengths, inconsistent platforms ENCFF013AWH fastq fastq reads ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 31 single-ended 115629854 Kevin White, UChicago 3ce3a2272612e27f17029f007b26aec2 https://www.encodeproject.org/files/ENCFF013AWH/@@download/ENCFF013AWH.fastq.gz Illumina Genome Analyzer /files/ENCFF990OUB/, /files/ENCFF063ZRM/, /files/ENCFF280KYG/, /files/ENCFF425LNJ/ released s3://encode-public/2018/01/09/4320eb86-b18b-47c7-9581-05cd3a13ff9f/ENCFF013AWH.fastq.gz mixed read lengths, inconsistent platforms ENCFF549WIN bigWig bigWig read-depth normalized signal ce10 ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF058QXN/ 10056329 Kevin White, UChicago e06fdab504c572c174af8080e79fa061 https://www.encodeproject.org/files/ENCFF549WIN/@@download/ENCFF549WIN.bigWig released s3://encode-public/2018/01/09/86b93c99-1862-42ef-b1c3-b20c26301dfc/ENCFF549WIN.bigWig Lab custom ce10 archived mixed read lengths, inconsistent platforms ENCFF121JDI fastq fastq reads ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1 1_1 31 single-ended 102117426 Kevin White, UChicago 1e295fc76da608fd6eea6534d1c1afc9 https://www.encodeproject.org/files/ENCFF121JDI/@@download/ENCFF121JDI.fastq.gz Illumina Genome Analyzer /files/ENCFF990OUB/, /files/ENCFF063ZRM/, /files/ENCFF280KYG/, /files/ENCFF425LNJ/ released s3://encode-public/2018/01/09/55a72793-6c51-42b3-86f1-9dc25c5c5687/ENCFF121JDI.fastq.gz mixed read lengths, inconsistent platforms ENCFF666WPP fastq fastq reads ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 2 2_1 31 single-ended 115549429 Kevin White, UChicago 5ee4994498494e64eadb377ece1ee8f7 https://www.encodeproject.org/files/ENCFF666WPP/@@download/ENCFF666WPP.fastq.gz Illumina Genome Analyzer /files/ENCFF990OUB/, /files/ENCFF063ZRM/, /files/ENCFF280KYG/, /files/ENCFF425LNJ/ released s3://encode-public/2018/01/09/02f63946-f4f0-4d06-95c6-380fb10c0571/ENCFF666WPP.fastq.gz mixed read lengths, inconsistent platforms ENCFF058QXN bam bam alignments ce10 ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF013AWH/, /files/ENCFF121JDI/, /files/ENCFF848VQD/, /files/ENCFF666WPP/, /files/ENCFF987UMF/ 568610098 Kevin White, UChicago 3d863553bbeae06ff295684293efb090 https://www.encodeproject.org/files/ENCFF058QXN/@@download/ENCFF058QXN.bam released s3://encode-public/2018/01/09/7b38905a-c973-403a-bc56-83eb60fbafbe/ENCFF058QXN.bam Lab custom ce10 archived mixed read lengths, inconsistent platforms ENCFF057SVO bam bam alignments ce11 ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 30 /files/ENCFF013AWH/, /files/ENCFF121JDI/, /files/ENCFF848VQD/, /files/ENCFF666WPP/, /files/ENCFF586MOL/ 569024681 Kevin White, UChicago e960d6efc17b3cfd0215518cd3576cb5 https://www.encodeproject.org/files/ENCFF057SVO/@@download/ENCFF057SVO.bam released s3://encode-public/2018/01/09/bfa2b1a0-aea2-464c-ae61-a334d5225ac4/ENCFF057SVO.bam Lab custom ce11 released mixed read lengths, inconsistent platforms ENCFF560THE bigWig bigWig signal of unique reads ce10 ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF058QXN/ 10038182 Kevin White, UChicago aff7386fba1149147b88499c35a6708d https://www.encodeproject.org/files/ENCFF560THE/@@download/ENCFF560THE.bigWig released s3://encode-public/2018/01/09/2eb2a5ad-6559-49fe-b7ce-da45586b6292/ENCFF560THE.bigWig Lab custom ce10 archived mixed read lengths, inconsistent platforms ENCFF241CBR bigWig bigWig signal of unique reads ce11 ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF057SVO/ 10031532 Kevin White, UChicago 8acd425f9a079291446d9420449e6995 https://www.encodeproject.org/files/ENCFF241CBR/@@download/ENCFF241CBR.bigWig released s3://encode-public/2018/01/09/b71e0566-1fc8-443d-90a8-eefcdeeaeebe/ENCFF241CBR.bigWig Lab custom ce11 released mixed read lengths, inconsistent platforms ENCFF171AEG bigWig bigWig read-depth normalized signal ce11 ENCSR626WON Control ChIP-seq /worm-donors/ENCDO477BVR/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF057SVO/ 10051181 Kevin White, UChicago f9432efc87b77abbccaa824a93f508aa https://www.encodeproject.org/files/ENCFF171AEG/@@download/ENCFF171AEG.bigWig released s3://encode-public/2018/01/09/5a70e282-9307-40f2-87cf-e2c97960e09f/ENCFF171AEG.bigWig Lab custom ce11 released mixed read lengths, inconsistent platforms ENCFF618USE fastq fastq reads ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 3490840131 Bing Ren, UCSD 3de6b4f47c614e8f19a55e95455461f1 SRA:SRR3653402 https://www.encodeproject.org/files/ENCFF618USE/@@download/ENCFF618USE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/10dd0d92-1e37-4bde-81ba-3c47656de728/ENCFF618USE.fastq.gz inconsistent platforms ENCFF091XIS fastq fastq reads ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2302447140 Bing Ren, UCSD bc63815eb518c6bdcab4e9b04f8069ac SRA:SRR3653398 https://www.encodeproject.org/files/ENCFF091XIS/@@download/ENCFF091XIS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/b9895790-3306-4c26-9331-1a0243338e52/ENCFF091XIS.fastq.gz inconsistent platforms ENCFF747OOK fastq fastq reads ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 377392246 Bing Ren, UCSD 0b2324f997519ae6de6c00976ffdaaef SRA:SRR3653399 https://www.encodeproject.org/files/ENCFF747OOK/@@download/ENCFF747OOK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/ef129929-6691-4ab1-b434-8954df5992a2/ENCFF747OOK.fastq.gz inconsistent platforms ENCFF087UEM bam bam alignments mm10-minimal ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2 50 /files/ENCFF806TVZ/, /files/ENCFF091XIS/, /files/ENCFF747OOK/ 2112125872 ENCODE Processing Pipeline 20345dc333633c919eadfab6067b046c https://www.encodeproject.org/files/ENCFF087UEM/@@download/ENCFF087UEM.bam archived s3://encode-public/2015/10/31/0ff33276-ccee-4e47-881d-b09e76d67d90/ENCFF087UEM.bam inconsistent platforms ENCFF478WUL bam bam alignments mm10-minimal ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF618USE/, /files/ENCFF806TVZ/ 2597472255 ENCODE Processing Pipeline ca2850e4509fc845350cbbbcb9dbd1dd https://www.encodeproject.org/files/ENCFF478WUL/@@download/ENCFF478WUL.bam archived s3://encode-public/2015/10/31/9f5084c5-c403-464b-a7ca-1a7c50ace14e/ENCFF478WUL.bam inconsistent platforms ENCFF771MNJ fastq fastq reads ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 358515916 Bing Ren, UCSD 5f2c2a7d668ccd79b04a3003660cb2b1 SRA:SRR3653400 https://www.encodeproject.org/files/ENCFF771MNJ/@@download/ENCFF771MNJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/c09afd8f-ef43-421f-ab51-f95618f453c9/ENCFF771MNJ.fastq.gz inconsistent platforms ENCFF271NJE fastq fastq reads ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_4 50 single-ended 793069604 Bing Ren, UCSD b90ca0b18e5152d732506fe355ffb1a8 SRA:SRR3653401 https://www.encodeproject.org/files/ENCFF271NJE/@@download/ENCFF271NJE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/2312f6d6-8c7b-4d27-82f0-a8d6e4a56b4f/ENCFF271NJE.fastq.gz inconsistent platforms ENCFF518NNC fastq fastq reads ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 309203706 Bing Ren, UCSD 353b64d73150a4b44ccd5127232d1754 SRA:SRR3653403 https://www.encodeproject.org/files/ENCFF518NNC/@@download/ENCFF518NNC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/f24eef67-d293-4602-8600-a0f9af033b18/ENCFF518NNC.fastq.gz inconsistent platforms ENCFF182XFG bam bam unfiltered alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3, 2_4 50 /files/ENCFF018NEO/, /files/ENCFF271NJE/, /files/ENCFF091XIS/, /files/ENCFF747OOK/, /files/ENCFF771MNJ/ 4931020994 ENCODE Processing Pipeline 0438d0834345571bc93ec2275e658c2f https://www.encodeproject.org/files/ENCFF182XFG/@@download/ENCFF182XFG.bam released s3://encode-public/2016/07/18/a9de6a92-71f6-4108-8432-4ff19fa4d493/ENCFF182XFG.bam ENCODE3 mm10 archived inconsistent platforms ENCFF556BOJ bam bam alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF618USE/, /files/ENCFF518NNC/ 2935455517 ENCODE Processing Pipeline 73276f00922ac268929d0a24030bca1c https://www.encodeproject.org/files/ENCFF556BOJ/@@download/ENCFF556BOJ.bam released s3://encode-public/2016/07/18/3bb08cfc-d984-4262-9bec-5e8b58beb12c/ENCFF556BOJ.bam ENCODE3 mm10 archived inconsistent platforms ENCFF727QTS bam bam unfiltered alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF618USE/, /files/ENCFF518NNC/ 4664318046 ENCODE Processing Pipeline 2b45372027a772205452af65aeb58603 https://www.encodeproject.org/files/ENCFF727QTS/@@download/ENCFF727QTS.bam released s3://encode-public/2016/07/18/08f19424-bc5f-44c1-9b54-302aa21c4b7f/ENCFF727QTS.bam ENCODE3 mm10 archived inconsistent platforms ENCFF708TTS bam bam alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3, 2_4 50 /files/ENCFF018NEO/, /files/ENCFF271NJE/, /files/ENCFF091XIS/, /files/ENCFF747OOK/, /files/ENCFF771MNJ/ 3276568337 ENCODE Processing Pipeline ba5f4951a0ba7a985678de31869822f0 https://www.encodeproject.org/files/ENCFF708TTS/@@download/ENCFF708TTS.bam released s3://encode-public/2016/07/18/091ff27c-8321-4977-b426-8d3b5e6737af/ENCFF708TTS.bam ENCODE3 mm10 archived inconsistent platforms ENCFF418WVD bam bam alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3, 2_4 50 /files/ENCFF309GLL/, /files/ENCFF091XIS/, /files/ENCFF747OOK/, /files/ENCFF271NJE/, /files/ENCFF771MNJ/ 3345270294 ENCODE Processing Pipeline ade52403b714c2015d7b4c8adffe708f https://www.encodeproject.org/files/ENCFF418WVD/@@download/ENCFF418WVD.bam released s3://encode-public/2020/10/07/283cb22f-b90c-4a4e-aceb-0f11e35021f2/ENCFF418WVD.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF898RFH bam bam alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF518NNC/, /files/ENCFF618USE/ 3012742724 ENCODE Processing Pipeline ac456055c01b75f52e16800aebdf3e0a https://www.encodeproject.org/files/ENCFF898RFH/@@download/ENCFF898RFH.bam released s3://encode-public/2020/10/07/564c6667-a7b0-4214-bd17-d9f575d226ed/ENCFF898RFH.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF529UOU bam bam unfiltered alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF309GLL/, /files/ENCFF518NNC/, /files/ENCFF618USE/ 4561226231 ENCODE Processing Pipeline 5a0cc1a24d3be3e4913db0479dd8bf97 https://www.encodeproject.org/files/ENCFF529UOU/@@download/ENCFF529UOU.bam released s3://encode-public/2020/10/07/ddb1b876-e0f5-4702-80a6-9286dd816cce/ENCFF529UOU.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF060EIM bam bam unfiltered alignments mm10 ENCSR981PSX Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3, 2_4 50 /files/ENCFF309GLL/, /files/ENCFF091XIS/, /files/ENCFF747OOK/, /files/ENCFF271NJE/, /files/ENCFF771MNJ/ 4790897140 ENCODE Processing Pipeline f0537c65df946305500065d3dbd81836 https://www.encodeproject.org/files/ENCFF060EIM/@@download/ENCFF060EIM.bam released s3://encode-public/2020/10/07/d8482f2b-3990-4b53-a027-13c73b4f973b/ENCFF060EIM.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF259FSS fastq fastq reads ENCSR814NFI Control ChIP-seq /worm-donors/ENCDO079LSX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 50 single-ended 643731683 Kevin White, UChicago 71ebf661f91982d7c98b074e6caad5a7 https://www.encodeproject.org/files/ENCFF259FSS/@@download/ENCFF259FSS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/0431c2fe-cf49-4b02-b9a6-253594390880/ENCFF259FSS.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF497LBL bam bam alignments ce10 ENCSR814NFI Control ChIP-seq /worm-donors/ENCDO079LSX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF259FSS/ 927207788 Kevin White, UChicago 766147e4cbc3b280c4e8046c6f6dbe6b https://www.encodeproject.org/files/ENCFF497LBL/@@download/ENCFF497LBL.bam released s3://encode-public/2015/08/07/faea7da1-48b0-4bd9-aae7-735990f2ff91/ENCFF497LBL.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF219JGP bigWig bigWig signal of unique reads ce10 ENCSR814NFI Control ChIP-seq /worm-donors/ENCDO079LSX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF497LBL/ 9970199 Kevin White, UChicago 067f3fadf8edae2908dac9cd73a64e1e https://www.encodeproject.org/files/ENCFF219JGP/@@download/ENCFF219JGP.bigWig released s3://encode-public/2015/10/02/54823136-a71a-4f0d-bbaf-f2b732ebc082/ENCFF219JGP.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF278CIO bigWig bigWig read-depth normalized signal ce10 ENCSR814NFI Control ChIP-seq /worm-donors/ENCDO079LSX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF497LBL/ 9987558 Kevin White, UChicago 9893e41b8132b28bd270dc90ab4604ca https://www.encodeproject.org/files/ENCFF278CIO/@@download/ENCFF278CIO.bigWig released s3://encode-public/2015/10/02/5e07e862-52b8-43b4-905c-6ef525e1fcbf/ENCFF278CIO.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF995WLX bam bam alignments ce11 ENCSR814NFI Control ChIP-seq /worm-donors/ENCDO079LSX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF259FSS/ 928004128 Kevin White, UChicago 2025c2e52f391ee5d4c47739cdb14c3c https://www.encodeproject.org/files/ENCFF995WLX/@@download/ENCFF995WLX.bam released s3://encode-public/2016/01/20/dd93d541-124f-4b11-8dda-2dedd0e07f98/ENCFF995WLX.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF844IPV bigWig bigWig signal of unique reads ce11 ENCSR814NFI Control ChIP-seq /worm-donors/ENCDO079LSX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF995WLX/ 9962429 Kevin White, UChicago 96433de352d9650728a48c3ecd085424 https://www.encodeproject.org/files/ENCFF844IPV/@@download/ENCFF844IPV.bigWig released s3://encode-public/2016/02/03/e30d977e-f20c-4dde-9884-3907c393b6c8/ENCFF844IPV.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF463UIF bigWig bigWig read-depth normalized signal ce11 ENCSR814NFI Control ChIP-seq /worm-donors/ENCDO079LSX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} ce11 I 8943797 8976824 DNA 2017-11-22 modERN sonication (generic microtip) 1 1_1 /files/ENCFF995WLX/ 9965673 Kevin White, UChicago 133edf4db748e0293e34dbe8ac132b82 https://www.encodeproject.org/files/ENCFF463UIF/@@download/ENCFF463UIF.bigWig released s3://encode-public/2016/02/03/72aab6ec-00bc-4df8-9b6a-dd2817d91912/ENCFF463UIF.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization, missing genotype ENCFF761WLY fastq fastq reads ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 3161649001 Bing Ren, UCSD 462339120a88a6fdcf321b35cf1bbf00 SRA:SRR3651930 https://www.encodeproject.org/files/ENCFF761WLY/@@download/ENCFF761WLY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/6fd46336-b385-4a4c-bca7-ee263348895c/ENCFF761WLY.fastq.gz inconsistent platforms ENCFF853ZDE fastq fastq reads ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 3798849161 Bing Ren, UCSD 4ef8a6c9fd0a8a65e32bae524fcae958 SRA:SRR3651932 https://www.encodeproject.org/files/ENCFF853ZDE/@@download/ENCFF853ZDE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/8e4bcea9-0aa0-4f23-a30c-573f4d8e6cae/ENCFF853ZDE.fastq.gz inconsistent platforms ENCFF309QAZ bam bam alignments mm10-minimal ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF853ZDE/, /files/ENCFF806TVZ/ 2792220578 ENCODE Processing Pipeline 18bcc7ff43387858f38fd8dc1ae453df https://www.encodeproject.org/files/ENCFF309QAZ/@@download/ENCFF309QAZ.bam archived s3://encode-public/2015/10/31/f1430478-ffcb-417a-a190-1fadbd3df6da/ENCFF309QAZ.bam inconsistent platforms ENCFF015ICF bam bam alignments mm10-minimal ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF761WLY/ 2353588017 ENCODE Processing Pipeline ff677e8139c888d5f27d5e5df56fa230 https://www.encodeproject.org/files/ENCFF015ICF/@@download/ENCFF015ICF.bam archived s3://encode-public/2015/10/31/e334f202-aa7f-47c3-97d3-de649f4f3c16/ENCFF015ICF.bam inconsistent platforms ENCFF228SGW bam bam unfiltered alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF853ZDE/, /files/ENCFF018NEO/ 4534897809 ENCODE Processing Pipeline 41dc614136e9208595947a1d9175112c https://www.encodeproject.org/files/ENCFF228SGW/@@download/ENCFF228SGW.bam released s3://encode-public/2016/05/20/4c66c7d7-1d52-4717-b681-89a7e27deaa4/ENCFF228SGW.bam ENCODE3 mm10 archived inconsistent platforms ENCFF098HSW bam bam alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF853ZDE/, /files/ENCFF018NEO/ 2791574504 ENCODE Processing Pipeline aa853842466864c5695ac77a6556375c https://www.encodeproject.org/files/ENCFF098HSW/@@download/ENCFF098HSW.bam released s3://encode-public/2016/05/20/c6a58619-d089-41cd-9441-24e0e4534a6e/ENCFF098HSW.bam ENCODE3 mm10 archived inconsistent platforms ENCFF891IWG fastq fastq reads ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_2 50 single-ended 378198794 Bing Ren, UCSD 3f5f89c8acc98663ca21558639875551 SRA:SRR3651931 https://www.encodeproject.org/files/ENCFF891IWG/@@download/ENCFF891IWG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/b96b1104-cc2f-4cfb-9d98-d0cf4fc63287/ENCFF891IWG.fastq.gz inconsistent platforms ENCFF738CMD bam bam unfiltered alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF761WLY/, /files/ENCFF891IWG/ 4373900595 ENCODE Processing Pipeline 59b5c343bced2f20bcd62887fecfef9d https://www.encodeproject.org/files/ENCFF738CMD/@@download/ENCFF738CMD.bam released s3://encode-public/2016/07/18/a52644c2-7e76-47a7-9a23-fe0caa7e14c9/ENCFF738CMD.bam ENCODE3 mm10 archived inconsistent platforms ENCFF805AXD bam bam alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF018NEO/, /files/ENCFF761WLY/, /files/ENCFF891IWG/ 2756727749 ENCODE Processing Pipeline 33b2c6c06325ae416ff796d6326601bf https://www.encodeproject.org/files/ENCFF805AXD/@@download/ENCFF805AXD.bam released s3://encode-public/2016/07/18/3e6f8fb1-5878-4336-9a71-c0a975e135fd/ENCFF805AXD.bam ENCODE3 mm10 archived inconsistent platforms ENCFF466YRY bam bam unfiltered alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF853ZDE/ 4455961105 ENCODE Processing Pipeline 239a94868fadd4cc83e748556fa03d32 https://www.encodeproject.org/files/ENCFF466YRY/@@download/ENCFF466YRY.bam released s3://encode-public/2020/10/08/5068e828-22f1-4466-a567-685bca319a24/ENCFF466YRY.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF739EOA bam bam unfiltered alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF761WLY/, /files/ENCFF309GLL/, /files/ENCFF891IWG/ 4274339951 ENCODE Processing Pipeline 0bd9e1b475fc59ef70d40b3779dd4b43 https://www.encodeproject.org/files/ENCFF739EOA/@@download/ENCFF739EOA.bam released s3://encode-public/2020/10/08/2fcbcfda-e6b7-4481-819c-811876f7c7d9/ENCFF739EOA.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF470TNZ bam bam alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1, 1_2 50 /files/ENCFF761WLY/, /files/ENCFF309GLL/, /files/ENCFF891IWG/ 2827084621 ENCODE Processing Pipeline 35bbd35809c33d8494b0b06030967bd0 https://www.encodeproject.org/files/ENCFF470TNZ/@@download/ENCFF470TNZ.bam released s3://encode-public/2020/10/08/dc5d2299-7de2-4ffd-914b-dc2c925970aa/ENCFF470TNZ.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF492ZUN bam bam alignments mm10 ENCSR351BDM Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001049 neural tube tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF853ZDE/ 2881007131 ENCODE Processing Pipeline d101e569ac640c7a803114a23cb074f3 https://www.encodeproject.org/files/ENCFF492ZUN/@@download/ENCFF492ZUN.bam released s3://encode-public/2020/10/08/5304baea-590e-4eec-a71d-27c5076334ce/ENCFF492ZUN.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF873LFP bam bam redacted unfiltered alignments GRCh38 ENCSR630WLQ Control ChIP-seq /human-donors/ENCDO329NER/ UBERON:0002037 cerebellum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF313HFA/, /files/ENCFF643CGH/ 416359455 ENCODE Processing Pipeline 354fc381b203ea0ec3969be47bdac8b6 https://www.encodeproject.org/files/ENCFF873LFP/@@download/ENCFF873LFP.bam released s3://encode-public/2017/11/09/bf9e7055-7310-423e-8953-a7b140f4f222/ENCFF873LFP.bam ENCODE3 GRCh38 archived ENCFF910GLU bam bam redacted alignments GRCh38 ENCSR630WLQ Control ChIP-seq /human-donors/ENCDO329NER/ UBERON:0002037 cerebellum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF313HFA/, /files/ENCFF643CGH/ 306761786 ENCODE Processing Pipeline 2a071ac0518e98f9e20f7f11f045979c https://www.encodeproject.org/files/ENCFF910GLU/@@download/ENCFF910GLU.bam released s3://encode-public/2017/11/09/497114ae-170b-42b6-8360-2fdd867872a1/ENCFF910GLU.bam ENCODE3 GRCh38 archived ENCFF631VUB bam bam redacted alignments hg19 ENCSR630WLQ Control ChIP-seq /human-donors/ENCDO329NER/ UBERON:0002037 cerebellum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF313HFA/, /files/ENCFF807MUK/ 306376295 ENCODE Processing Pipeline 3c559bb694fa95c87999b791369c8bff https://www.encodeproject.org/files/ENCFF631VUB/@@download/ENCFF631VUB.bam released s3://encode-public/2018/01/20/d26bbadb-75c0-44a7-b376-97c7ad669d27/ENCFF631VUB.bam ENCODE3 hg19 archived ENCFF849YFZ bam bam redacted unfiltered alignments hg19 ENCSR630WLQ Control ChIP-seq /human-donors/ENCDO329NER/ UBERON:0002037 cerebellum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF313HFA/, /files/ENCFF807MUK/ 411326122 ENCODE Processing Pipeline 50b093295cf0f36288a911cbd571b7b2 https://www.encodeproject.org/files/ENCFF849YFZ/@@download/ENCFF849YFZ.bam released s3://encode-public/2018/01/20/6b8bfb1d-00fd-46df-9fbd-aebc56c90a8e/ENCFF849YFZ.bam ENCODE3 hg19 archived ENCFF327LNK bam bam redacted alignments GRCh38 ENCSR630WLQ Control ChIP-seq /human-donors/ENCDO329NER/ UBERON:0002037 cerebellum tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF513NSA/, /files/ENCFF110MCL/ 1846563966 ENCODE Processing Pipeline 9e91d54165e9ec19c77f0ec43d1406c7 https://www.encodeproject.org/files/ENCFF327LNK/@@download/ENCFF327LNK.bam released s3://encode-public/2021/01/28/4ab33f7e-8fb2-45f5-9e67-e0c4a2c9add6/ENCFF327LNK.bam ENCODE4 v1.7.0 GRCh38 released ENCFF890QSY fastq fastq reads ENCSR799DSA Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 50 single-ended 840581631 Kevin White, UChicago 4c4357969481bd0501f5cdcf147996d6 https://www.encodeproject.org/files/ENCFF890QSY/@@download/ENCFF890QSY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/8e4f4e61-50a6-4ca0-ab58-f129d83b5bb0/ENCFF890QSY.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF040IQW bam bam alignments ce10 ENCSR799DSA Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF890QSY/ 1144811870 Kevin White, UChicago f657ea3947be07812472e61a0d0d504a https://www.encodeproject.org/files/ENCFF040IQW/@@download/ENCFF040IQW.bam released s3://encode-public/2015/08/07/0496684d-2b08-4bca-b0f5-5ee6dd6565eb/ENCFF040IQW.bam Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF273FWZ bigWig bigWig read-depth normalized signal ce10 ENCSR799DSA Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF040IQW/ 10036021 Kevin White, UChicago 0922995d62c7e258448fa9909b681a57 https://www.encodeproject.org/files/ENCFF273FWZ/@@download/ENCFF273FWZ.bigWig released s3://encode-public/2015/10/02/a5fbd30a-9109-405f-9ca4-17b7564d6903/ENCFF273FWZ.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF780HPN bigWig bigWig signal of unique reads ce10 ENCSR799DSA Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF040IQW/ 10031408 Kevin White, UChicago 73fba95f91abc08382ddfeddfdfccdfd https://www.encodeproject.org/files/ENCFF780HPN/@@download/ENCFF780HPN.bigWig released s3://encode-public/2015/10/02/034eab7f-837f-4fba-9cea-652f1477ca29/ENCFF780HPN.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF337LXD bam bam alignments ce11 ENCSR799DSA Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF890QSY/ 1145770321 Kevin White, UChicago cf599295c518f836a7d62855de70eb1a https://www.encodeproject.org/files/ENCFF337LXD/@@download/ENCFF337LXD.bam released s3://encode-public/2016/01/20/3cfa9933-1c09-4918-a10e-caa4545ba7c8/ENCFF337LXD.bam Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF688GDE bigWig bigWig signal of unique reads ce11 ENCSR799DSA Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF337LXD/ 10029540 Kevin White, UChicago c7e663da79ff7b4fe7111ae38bb70f96 https://www.encodeproject.org/files/ENCFF688GDE/@@download/ENCFF688GDE.bigWig released s3://encode-public/2016/02/03/b43a6770-773b-4f9a-9f86-d7fd291ad384/ENCFF688GDE.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF694JDB bigWig bigWig read-depth normalized signal ce11 ENCSR799DSA Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-09-29 modERN sonication (generic microtip) 1 1_1 /files/ENCFF337LXD/ 10034437 Kevin White, UChicago 5336c64707c6b15c496fb33324eff48c https://www.encodeproject.org/files/ENCFF694JDB/@@download/ENCFF694JDB.bigWig released s3://encode-public/2016/02/03/4b39ed5d-c928-4c96-b159-8ecb80148c6f/ENCFF694JDB.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF373BIX fastq fastq reads ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 83300193 Michael Snyder, Stanford 3b87ad00a380b54d59727459e4a6c2b3 https://www.encodeproject.org/files/ENCFF373BIX/@@download/ENCFF373BIX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/33122e5b-d472-4fe0-88ae-3325861f703b/ENCFF373BIX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF108ZGD fastq fastq reads ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 87288148 Michael Snyder, Stanford 9e087ab0ab35304c5a20935a33117286 https://www.encodeproject.org/files/ENCFF108ZGD/@@download/ENCFF108ZGD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/2fc5521d-6c4a-4fc3-afa6-c5fc8f4c8059/ENCFF108ZGD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF332YGI bigWig bigWig read-depth normalized signal ce10 ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF236OXW/ 9975541 Kevin White, UChicago f7369872d5d49e4ac1b7b8be076e6250 https://www.encodeproject.org/files/ENCFF332YGI/@@download/ENCFF332YGI.bigWig released s3://encode-public/2017/04/29/de13e9e9-10c0-4330-b915-a9bd9189d7d1/ENCFF332YGI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF262GDN bigWig bigWig signal of unique reads ce10 ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF236OXW/ 9976940 Kevin White, UChicago dcb261467fbd8efd424c4f5c0a18ea87 https://www.encodeproject.org/files/ENCFF262GDN/@@download/ENCFF262GDN.bigWig released s3://encode-public/2017/04/29/183ec7bb-b4fd-412b-b69e-0ce70711feeb/ENCFF262GDN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF203MZF bam bam alignments ce11 ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF373BIX/, /files/ENCFF108ZGD/, /files/ENCFF586MOL/ 220503979 Kevin White, UChicago 78b274cb52372c63f787cbcd13ffcc26 https://www.encodeproject.org/files/ENCFF203MZF/@@download/ENCFF203MZF.bam released s3://encode-public/2018/01/05/219e7a43-c072-4325-9312-e90b34e12637/ENCFF203MZF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF236OXW bam bam alignments ce10 ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF373BIX/, /files/ENCFF108ZGD/, /files/ENCFF987UMF/ 220277818 Kevin White, UChicago 10136390e386a3608f88080ecc59fbf5 https://www.encodeproject.org/files/ENCFF236OXW/@@download/ENCFF236OXW.bam released s3://encode-public/2018/01/05/3581cce8-c7a9-4500-bbde-653b51f23172/ENCFF236OXW.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF284NRC bigWig bigWig signal of unique reads ce11 ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF203MZF/ 9976620 Kevin White, UChicago 9577dc164e2ad781d5afb90d8afa346a https://www.encodeproject.org/files/ENCFF284NRC/@@download/ENCFF284NRC.bigWig released s3://encode-public/2018/01/22/ef07567d-1e63-4499-9c74-64fca19bd87c/ENCFF284NRC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF716NLM bigWig bigWig read-depth normalized signal ce11 ENCSR653LES Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF203MZF/ 9975950 Kevin White, UChicago 8f51f18237ea8aaf84f3079e864768cb https://www.encodeproject.org/files/ENCFF716NLM/@@download/ENCFF716NLM.bigWig released s3://encode-public/2018/01/22/26b04b98-cad8-403e-aea8-547e5acb039b/ENCFF716NLM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF414JJY fastq fastq reads ENCSR948SUV Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 387607907 Kevin White, UChicago 437ab5d1619addc891bd2a7838dd3a02 https://www.encodeproject.org/files/ENCFF414JJY/@@download/ENCFF414JJY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/29/798e2f5c-97a0-4b94-b288-81df0cd94290/ENCFF414JJY.fastq.gz missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF750BUC bam bam alignments ce10 ENCSR948SUV Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF414JJY/ 554118268 Kevin White, UChicago 6186668d6e8b6dbcfa4eb349514dda55 https://www.encodeproject.org/files/ENCFF750BUC/@@download/ENCFF750BUC.bam released s3://encode-public/2015/08/07/b1f37047-4444-4fd4-a490-919a808143fb/ENCFF750BUC.bam Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF426HAG bigWig bigWig read-depth normalized signal ce10 ENCSR948SUV Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF750BUC/ 10041201 Kevin White, UChicago 7f9bdc38bf0b071602e06d47b3d3e035 https://www.encodeproject.org/files/ENCFF426HAG/@@download/ENCFF426HAG.bigWig released s3://encode-public/2015/10/02/4cd8a1ee-7aee-4e56-8b3c-e340e656fe5d/ENCFF426HAG.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF326ZOX bigWig bigWig signal of unique reads ce10 ENCSR948SUV Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF750BUC/ 9974063 Kevin White, UChicago 614b50a56bf46dea1c2c38989d4a0c0c https://www.encodeproject.org/files/ENCFF326ZOX/@@download/ENCFF326ZOX.bigWig released s3://encode-public/2015/10/02/61180be8-4272-4cbf-8c99-1a9aad3278d5/ENCFF326ZOX.bigWig Lab custom ce10 archived missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF877BIQ bam bam alignments ce11 ENCSR948SUV Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF414JJY/ 554572634 Kevin White, UChicago bdef084d419512399ef786472d4d6ebe https://www.encodeproject.org/files/ENCFF877BIQ/@@download/ENCFF877BIQ.bam released s3://encode-public/2016/01/19/203cb5c8-45f2-4137-aac4-8e5834ab1a80/ENCFF877BIQ.bam Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF490TAJ bigWig bigWig signal of unique reads ce11 ENCSR948SUV Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF877BIQ/ 9973555 Kevin White, UChicago e67f773983e05e0cc6dd7edadf9c95d7 https://www.encodeproject.org/files/ENCFF490TAJ/@@download/ENCFF490TAJ.bigWig released s3://encode-public/2016/02/03/b65d9f85-d92f-4f7e-8997-756f09c496d9/ENCFF490TAJ.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF225ZQF bigWig bigWig read-depth normalized signal ce11 ENCSR948SUV Control ChIP-seq /worm-donors/ENCDO187KYW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172243/'], '@type': ['Target', 'Item'], 'name': 'rnt-1-celegans', 'label': 'rnt-1', '@id': '/targets/rnt-1-celegans/', 'title': 'rnt-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f79e69b7-98a1-461b-83d2-6182c510dba2', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF877BIQ/ 10042500 Kevin White, UChicago 60cc2b0b829673c189352ea2c81f48f7 https://www.encodeproject.org/files/ENCFF225ZQF/@@download/ENCFF225ZQF.bigWig released s3://encode-public/2016/02/03/3bea0b2c-dcb5-4c35-a5af-ec37c2c100de/ENCFF225ZQF.bigWig Lab custom ce11 released missing compliant biosample characterization, mild to moderate bottlenecking, missing genetic modification characterization ENCFF761DEA fastq fastq reads ENCSR116BMC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 67285702 Kevin White, UChicago 6a79ed75c3659e183d64e51364b2360b https://www.encodeproject.org/files/ENCFF761DEA/@@download/ENCFF761DEA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/07/30/c750de8a-096f-4f8f-9848-fb22bcd05235/ENCFF761DEA.fastq.gz missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF271TDH bam bam alignments ce10 ENCSR116BMC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 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ce10 ENCSR116BMC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF271TDH/ 10120479 Kevin White, UChicago 8f2e161fe87c8e7e4533342801067b00 https://www.encodeproject.org/files/ENCFF346BNM/@@download/ENCFF346BNM.bigWig released s3://encode-public/2015/09/21/16b83d01-8a52-4224-acbc-95140c741f7a/ENCFF346BNM.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF068JTK bigWig bigWig read-depth normalized signal ce10 ENCSR116BMC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF271TDH/ 10123964 Kevin White, UChicago ca47f8e800319510fbd91c3744fff659 https://www.encodeproject.org/files/ENCFF068JTK/@@download/ENCFF068JTK.bigWig released s3://encode-public/2015/09/21/5a4c95ba-5028-4519-b103-a78e9d4c90a6/ENCFF068JTK.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF887IVH bam bam alignments ce11 ENCSR116BMC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 32 /files/ENCFF586MOL/, /files/ENCFF761DEA/ 82112637 Kevin White, UChicago be1cc0a5b90c8cb80aae165418726649 https://www.encodeproject.org/files/ENCFF887IVH/@@download/ENCFF887IVH.bam released s3://encode-public/2016/01/19/1896faf8-58f7-4f0f-9d27-0e57811b4488/ENCFF887IVH.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF071ILY bigWig bigWig signal of unique reads ce11 ENCSR116BMC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 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signal ce11 ENCSR116BMC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF887IVH/ 10119496 Kevin White, UChicago 8ae5d964fb2ef4dd59d06127d376de4e https://www.encodeproject.org/files/ENCFF232JYY/@@download/ENCFF232JYY.bigWig released s3://encode-public/2016/02/03/1fc53005-defe-44f4-a059-a38875d4caac/ENCFF232JYY.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization insufficient read depth ENCFF814ZUT fastq fastq reads ENCSR746FMO Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF518CYQ/ 3260128730 Michael Snyder, Stanford ad6fa35dc255a3cdd802b83bcacf8d22 SRA:SRR6214158 https://www.encodeproject.org/files/ENCFF814ZUT/@@download/ENCFF814ZUT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/4442c99d-e79f-49fa-abd1-b2c79836ccdf/ENCFF814ZUT.fastq.gz ENCFF518CYQ fastq fastq reads ENCSR746FMO Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF814ZUT/ 4038192277 Michael Snyder, Stanford 528c199ae81b417da57ece64bde0407c SRA:SRR6214158 https://www.encodeproject.org/files/ENCFF518CYQ/@@download/ENCFF518CYQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/3152c1b0-29ae-4a04-8815-a58b06f98a7f/ENCFF518CYQ.fastq.gz ENCFF878PDO bam bam unfiltered alignments GRCh38 ENCSR746FMO Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF814ZUT/, /files/ENCFF518CYQ/ 7110301857 ENCODE Processing Pipeline d1e0fbcd989d12a8e6b6659ab3f28e07 https://www.encodeproject.org/files/ENCFF878PDO/@@download/ENCFF878PDO.bam released s3://encode-public/2017/03/23/4dccaa7c-63c6-4d53-8499-3c4844f175ff/ENCFF878PDO.bam ENCODE3 GRCh38 archived ENCFF524BUF bam bam unfiltered alignments hg19 ENCSR746FMO Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 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sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF814ZUT/, /files/ENCFF518CYQ/ 4840457387 ENCODE Processing Pipeline d785c806bcedf168606c3e40728851c9 https://www.encodeproject.org/files/ENCFF033YSR/@@download/ENCFF033YSR.bam released s3://encode-public/2017/03/23/0ca8b4b2-380e-4c8d-85ba-a547bf46c3ca/ENCFF033YSR.bam ENCODE3 hg19 archived ENCFF653NVR bam bam unfiltered alignments GRCh38 ENCSR746FMO Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF814ZUT/, /files/ENCFF518CYQ/ 7105299692 ENCODE Processing Pipeline e759fce632c83c1188ef3e9a4337f08e https://www.encodeproject.org/files/ENCFF653NVR/@@download/ENCFF653NVR.bam released s3://encode-public/2020/06/02/f6535128-f874-40ae-ab28-9b254625d5c8/ENCFF653NVR.bam ENCODE4 GRCh38 released ENCFF534DTL bam bam alignments GRCh38 ENCSR746FMO Control ChIP-seq /human-donors/ENCDO793LXB/ UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF814ZUT/, /files/ENCFF518CYQ/ 4803503013 ENCODE Processing Pipeline 8dd8da660024e49e14da06fe99fc2597 https://www.encodeproject.org/files/ENCFF534DTL/@@download/ENCFF534DTL.bam released s3://encode-public/2020/06/02/5f3035fa-9ada-4796-aa6b-a00bf3ef532f/ENCFF534DTL.bam ENCODE4 GRCh38 released ENCFF931NVG bam bam unfiltered alignments hg19 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF807MUK/ 3926332828 ENCODE Processing Pipeline 67dded1a0581d693ee1b5aee70f9906d https://www.encodeproject.org/files/ENCFF931NVG/@@download/ENCFF931NVG.bam released s3://encode-public/2018/02/22/92737ad4-b2ac-4fd7-9179-0366ec097e2e/ENCFF931NVG.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF799XPQ fastq fastq reads ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 single-ended 3119016075 Bradley Bernstein, Broad 16d777a9bcc2be567741a3fbcafaa949 SRA:SRR5338719 https://www.encodeproject.org/files/ENCFF799XPQ/@@download/ENCFF799XPQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/10/27/b147dcf2-e0f6-4b4a-beb8-9167dac9898f/ENCFF799XPQ.fastq.gz low read length, mixed read lengths ENCFF829PCB fastq fastq reads ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 36 single-ended 1631494448 Bradley Bernstein, Broad 3633660d1a82e4965cdccbd63463ab17 SRA:SRR5338716 https://www.encodeproject.org/files/ENCFF829PCB/@@download/ENCFF829PCB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/27/212c5ffa-7998-4a9a-8263-f4573ffcf94a/ENCFF829PCB.fastq.gz low read length, mixed read lengths ENCFF186LRX bam bam alignments hg19 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF807MUK/ 2748616100 ENCODE Processing Pipeline 562ded7baefd39d3e1467902e1fb38ab https://www.encodeproject.org/files/ENCFF186LRX/@@download/ENCFF186LRX.bam released s3://encode-public/2015/11/09/0932b8b6-d5f0-4661-8fcc-8adf186f47a4/ENCFF186LRX.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF931SQB bam bam unfiltered alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF643CGH/ 3948739101 ENCODE Processing Pipeline f48469819e66026893518f5e4057cfb1 https://www.encodeproject.org/files/ENCFF931SQB/@@download/ENCFF931SQB.bam released s3://encode-public/2016/05/06/50d96b8d-a851-46c3-bb86-c3cb83fcdb09/ENCFF931SQB.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF607ZQL bam bam alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF643CGH/ 2747680054 ENCODE Processing Pipeline 52a782a56911a1f35de6d9e24435e048 https://www.encodeproject.org/files/ENCFF607ZQL/@@download/ENCFF607ZQL.bam released s3://encode-public/2016/05/06/0e4dd9fc-9329-45bd-906c-775ecb759b87/ENCFF607ZQL.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF775RGK fastq fastq reads ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 76 single-ended 620611955 Bradley Bernstein, Broad ff19f907e28a94bf50cdd3c0720d81d6 SRA:SRR5338717 https://www.encodeproject.org/files/ENCFF775RGK/@@download/ENCFF775RGK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/bb8a173e-ae58-4b64-b73e-c6824fb98206/ENCFF775RGK.fastq.gz low read length, mixed read lengths ENCFF349YSG fastq fastq reads ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 76 single-ended 593415042 Bradley Bernstein, Broad 92880f42f4ce23914bb0591151ffcae5 SRA:SRR5338718 https://www.encodeproject.org/files/ENCFF349YSG/@@download/ENCFF349YSG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/748be80d-5910-4b33-bc29-18e9d02c3bab/ENCFF349YSG.fastq.gz low read length, mixed read lengths ENCFF579GFV bam bam unfiltered alignments hg19 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 36 /files/ENCFF829PCB/, /files/ENCFF807MUK/, /files/ENCFF775RGK/, /files/ENCFF349YSG/ 2961763424 ENCODE Processing Pipeline 861a365115fb2a748646b969615bdf91 https://www.encodeproject.org/files/ENCFF579GFV/@@download/ENCFF579GFV.bam released s3://encode-public/2016/11/08/fc772cba-5c22-4794-a69d-39747ad2a493/ENCFF579GFV.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF112OEB bam bam alignments hg19 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 36 /files/ENCFF829PCB/, /files/ENCFF807MUK/, /files/ENCFF775RGK/, /files/ENCFF349YSG/ 2089141962 ENCODE Processing Pipeline 5210ba963ca4c1980a2e818f980767c1 https://www.encodeproject.org/files/ENCFF112OEB/@@download/ENCFF112OEB.bam released s3://encode-public/2016/11/08/324e0bf4-2e29-4436-ad0d-c056e25fca30/ENCFF112OEB.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF126PXT bam bam unfiltered alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 36 /files/ENCFF829PCB/, /files/ENCFF643CGH/, /files/ENCFF775RGK/, /files/ENCFF349YSG/ 2978866528 ENCODE Processing Pipeline 6d0228da33dfe00a1b56fde26ffe723e https://www.encodeproject.org/files/ENCFF126PXT/@@download/ENCFF126PXT.bam released s3://encode-public/2016/11/08/f3d7ce8e-cd49-4282-be15-c02b08112fc5/ENCFF126PXT.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF630PML bam bam alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 36 /files/ENCFF829PCB/, /files/ENCFF643CGH/, /files/ENCFF775RGK/, /files/ENCFF349YSG/ 2088371324 ENCODE Processing Pipeline c7c2711da93583805a25f93aacf88aa9 https://www.encodeproject.org/files/ENCFF630PML/@@download/ENCFF630PML.bam released s3://encode-public/2016/11/08/d2736ffa-6bae-4cb8-a568-bbf9f7380461/ENCFF630PML.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF740DOE bam bam alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF643CGH/ 2747680092 ENCODE Processing Pipeline 0e844beca9dbaa62cf759b3eab7b5541 https://www.encodeproject.org/files/ENCFF740DOE/@@download/ENCFF740DOE.bam released s3://encode-public/2020/02/19/4edf77e8-eb20-4dd7-bd82-85a943db5be0/ENCFF740DOE.bam low read length, mixed read lengths ENCFF236GWF bam bam unfiltered alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF643CGH/ 3948739140 ENCODE Processing Pipeline ef423b46828c3562ed8223784d77acbb https://www.encodeproject.org/files/ENCFF236GWF/@@download/ENCFF236GWF.bam released s3://encode-public/2020/02/19/40015d30-2b64-483b-8a00-dc228ca6690a/ENCFF236GWF.bam low read length, mixed read lengths ENCFF560ZOA bam bam unfiltered alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 36 /files/ENCFF829PCB/, /files/ENCFF349YSG/, /files/ENCFF110MCL/, /files/ENCFF775RGK/ 2898080883 ENCODE Processing Pipeline ad4846b3f22b945d84c22b15cfd016ce https://www.encodeproject.org/files/ENCFF560ZOA/@@download/ENCFF560ZOA.bam released s3://encode-public/2020/09/17/2698b34c-b39a-4412-a8ac-43c4ca1e0f92/ENCFF560ZOA.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF426OSE bam bam unfiltered alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF110MCL/ 3846110863 ENCODE Processing Pipeline a38d7199ea2d61399cf26efeec59429c https://www.encodeproject.org/files/ENCFF426OSE/@@download/ENCFF426OSE.bam released s3://encode-public/2020/09/17/b3ae506c-3b10-47ff-b115-ab52986cd134/ENCFF426OSE.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF110MPI bam bam alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 1 1_1 36 /files/ENCFF829PCB/, /files/ENCFF349YSG/, /files/ENCFF110MCL/, /files/ENCFF775RGK/ 2259810478 ENCODE Processing Pipeline f87f670eefc841ee75f9496090f6852c https://www.encodeproject.org/files/ENCFF110MPI/@@download/ENCFF110MPI.bam released s3://encode-public/2020/09/17/fc277101-b756-42a2-8756-8ad4aa7cb431/ENCFF110MPI.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF240AMM bam bam alignments GRCh38 ENCSR328AHC Control ChIP-seq /human-donors/ENCDO349AAA/ EFO:0002074 PC-3 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 300-600 2 2_1 36 /files/ENCFF799XPQ/, /files/ENCFF110MCL/ 2968447086 ENCODE Processing Pipeline 2feafb4c74bcae905986c137accde8cf https://www.encodeproject.org/files/ENCFF240AMM/@@download/ENCFF240AMM.bam released s3://encode-public/2020/09/17/50b68c7b-4b39-45df-915d-5ad723a6d70e/ENCFF240AMM.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF510HLV bigWig bigWig signal of unique reads dm6 ENCSR072UGA Control ChIP-seq /fly-donors/ENCDO861VZA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38890/'], '@type': ['Target', 'Item'], 'name': 'nmo-dmelanogaster', 'label': 'nmo', '@id': '/targets/nmo-dmelanogaster/', 'title': 'nmo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '515748e1-f4ea-4e4f-8923-9af30f840c77', 'status': 'released'} dm3 3L 7964184 8062310 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF203ZYD/ 17663900 Kevin White, UChicago 6d6a6f16d568c9cbf9d0e7318d6fb345 https://www.encodeproject.org/files/ENCFF510HLV/@@download/ENCFF510HLV.bigWig released s3://encode-public/2018/12/11/7ddeae3b-3e90-436f-8b6b-f0e99601df28/ENCFF510HLV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF732KQN bigWig bigWig read-depth normalized signal dm6 ENCSR072UGA Control ChIP-seq /fly-donors/ENCDO861VZA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38890/'], '@type': ['Target', 'Item'], 'name': 'nmo-dmelanogaster', 'label': 'nmo', '@id': '/targets/nmo-dmelanogaster/', 'title': 'nmo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '515748e1-f4ea-4e4f-8923-9af30f840c77', 'status': 'released'} dm3 3L 7964184 8062310 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF203ZYD/ 17686095 Kevin White, UChicago 55ff9fd30f10ac170f4073ab6c1b11bb https://www.encodeproject.org/files/ENCFF732KQN/@@download/ENCFF732KQN.bigWig released s3://encode-public/2018/12/11/3520667e-fc6e-483c-9807-9c5b23b7f7ef/ENCFF732KQN.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF111NYX fastq fastq reads ENCSR072UGA Control ChIP-seq /fly-donors/ENCDO861VZA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38890/'], '@type': ['Target', 'Item'], 'name': 'nmo-dmelanogaster', 'label': 'nmo', '@id': '/targets/nmo-dmelanogaster/', 'title': 'nmo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '515748e1-f4ea-4e4f-8923-9af30f840c77', 'status': 'released'} dm3 3L 7964184 8062310 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 655340404 Kevin White, UChicago 6fec12cabf9af1a2b75b6bfbd9117856 https://www.encodeproject.org/files/ENCFF111NYX/@@download/ENCFF111NYX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/11/63c4d740-4e14-40ab-8856-8446db8a533e/ENCFF111NYX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF203ZYD bam bam alignments dm6 ENCSR072UGA Control ChIP-seq /fly-donors/ENCDO861VZA/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38890/'], '@type': ['Target', 'Item'], 'name': 'nmo-dmelanogaster', 'label': 'nmo', '@id': '/targets/nmo-dmelanogaster/', 'title': 'nmo (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '515748e1-f4ea-4e4f-8923-9af30f840c77', 'status': 'released'} dm3 3L 7964184 8062310 DNA 2018-12-21 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF111NYX/, /files/ENCFF479RCH/ 878451047 Kevin White, UChicago 934c5a730add47c066cb20fc5ecf7acf https://www.encodeproject.org/files/ENCFF203ZYD/@@download/ENCFF203ZYD.bam released s3://encode-public/2018/12/11/5793a5e1-4c37-41cd-891e-0993dcdee6c8/ENCFF203ZYD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF040IJR bam bam unfiltered alignments hg19 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHD/, /files/ENCFF002DTX/, /files/ENCFF807MUK/ 7675992566 ENCODE Processing Pipeline 5fb9af8ad5ba4f003c2c946a2418eeaa https://www.encodeproject.org/files/ENCFF040IJR/@@download/ENCFF040IJR.bam released s3://encode-public/2018/02/21/fdce7bc2-6a25-4afe-9273-035e793b1924/ENCFF040IJR.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF793PGL bam bam unfiltered alignments hg19 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002ELX/, /files/ENCFF807MUK/, /files/ENCFF002ELW/ 4858429539 ENCODE Processing Pipeline 2fa6b07deb35c7b059c95382bcbad3cb https://www.encodeproject.org/files/ENCFF793PGL/@@download/ENCFF793PGL.bam released s3://encode-public/2018/02/21/35426219-3a0f-48c3-898f-d1da965d4eb2/ENCFF793PGL.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF002DTX fastq fastq reads ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EHD/ 3653919296 Michael Snyder, Stanford ac311da5aee5f4b645ed38faf3f268d5 SRA:SRR8660098 https://www.encodeproject.org/files/ENCFF002DTX/@@download/ENCFF002DTX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/03/e98f79d5-5719-4059-ba01-6565a645c409/ENCFF002DTX.fastq.gz mild to moderate bottlenecking ENCFF002EHD fastq fastq reads ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002DTX/ 3663993007 Michael Snyder, Stanford 64e40eb3eb5a0214623f1f842474205e SRA:SRR8660098 https://www.encodeproject.org/files/ENCFF002EHD/@@download/ENCFF002EHD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/c015c613-ed7f-425e-81e2-0ab346e40d5d/ENCFF002EHD.fastq.gz mild to moderate bottlenecking ENCFF002ELW fastq fastq reads ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002ELX/ 2156316909 Michael Snyder, Stanford d6155b35a45707eeeef9dbd007bac60e SRA:SRR8660099 https://www.encodeproject.org/files/ENCFF002ELW/@@download/ENCFF002ELW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/1aad2a99-650f-4fe8-8673-4c22a7d8be7e/ENCFF002ELW.fastq.gz mild to moderate bottlenecking ENCFF002ELX fastq fastq reads ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002ELW/ 2198415103 Michael Snyder, Stanford 40bfc629218790aa4acee1e2fcd0a005 SRA:SRR8660099 https://www.encodeproject.org/files/ENCFF002ELX/@@download/ENCFF002ELX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/06/d7f64ea5-43b1-42ff-8feb-36b236fd5c07/ENCFF002ELX.fastq.gz mild to moderate bottlenecking ENCFF758KLZ bam bam alignments hg19 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002ELX/, /files/ENCFF807MUK/, /files/ENCFF002ELW/ 4383574051 ENCODE Processing Pipeline f3775ce927806349f533ba0033d18394 https://www.encodeproject.org/files/ENCFF758KLZ/@@download/ENCFF758KLZ.bam released s3://encode-public/2015/10/29/077faa37-0211-4d88-ae7d-1cbc820fc4af/ENCFF758KLZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF906VLI bam bam alignments hg19 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHD/, /files/ENCFF002DTX/, /files/ENCFF807MUK/ 6224149150 ENCODE Processing Pipeline 95994c91fdb0fd985b7c7ebee127981a https://www.encodeproject.org/files/ENCFF906VLI/@@download/ENCFF906VLI.bam released s3://encode-public/2015/10/29/fe6f1076-db45-4a19-952c-17e9483e4182/ENCFF906VLI.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF152ULI bam bam unfiltered alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002ELX/, /files/ENCFF643CGH/, /files/ENCFF002ELW/ 4869967312 ENCODE Processing Pipeline 1a72ebdc48a4ad995d1c59f482164553 https://www.encodeproject.org/files/ENCFF152ULI/@@download/ENCFF152ULI.bam released s3://encode-public/2016/05/06/cda998e8-cac3-413c-a963-460e9b16a44a/ENCFF152ULI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF816MXR bam bam unfiltered alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHD/, /files/ENCFF002DTX/, /files/ENCFF643CGH/ 7685256362 ENCODE Processing Pipeline 456088f5d6a896e21173f426ac5b0b26 https://www.encodeproject.org/files/ENCFF816MXR/@@download/ENCFF816MXR.bam released s3://encode-public/2016/05/06/eb03a65a-491e-47e6-954d-13fb2bbaecef/ENCFF816MXR.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF373TNC bam bam alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002ELX/, /files/ENCFF643CGH/, /files/ENCFF002ELW/ 4387590626 ENCODE Processing Pipeline 33e4dc724a3857dfa67c55827ba0419d https://www.encodeproject.org/files/ENCFF373TNC/@@download/ENCFF373TNC.bam released s3://encode-public/2016/05/06/e4fd39cd-64a7-45f7-a732-3046f1ba14ad/ENCFF373TNC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF421EWU bam bam alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EHD/, /files/ENCFF002DTX/, /files/ENCFF643CGH/ 6229276583 ENCODE Processing Pipeline 865e793395a8adba706f4ffe331477f4 https://www.encodeproject.org/files/ENCFF421EWU/@@download/ENCFF421EWU.bam released s3://encode-public/2016/05/06/57134e44-e843-4f58-aa79-dc457edd598f/ENCFF421EWU.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF425TPY bam bam unfiltered alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002ELX/, /files/ENCFF002ELW/ 4820924775 ENCODE Processing Pipeline dac86e909d1bc8c3bbf93a5a1e680b22 https://www.encodeproject.org/files/ENCFF425TPY/@@download/ENCFF425TPY.bam released s3://encode-public/2020/06/13/e10076af-d0ea-4319-abe3-921006756090/ENCFF425TPY.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF470BTO bam bam alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF002ELX/, /files/ENCFF002ELW/ 4173493583 ENCODE Processing Pipeline 555a523b8ed91a39a09c5b34d47ead4e https://www.encodeproject.org/files/ENCFF470BTO/@@download/ENCFF470BTO.bam released s3://encode-public/2020/06/13/b019fee3-8721-4337-9942-91566b0a0a8f/ENCFF470BTO.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF402CWL bam bam alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EHD/, /files/ENCFF002DTX/ 5865312084 ENCODE Processing Pipeline 9992725a23ca3955dca03d80bc5d8acf https://www.encodeproject.org/files/ENCFF402CWL/@@download/ENCFF402CWL.bam released s3://encode-public/2020/06/13/cc5731b3-340b-43a8-b213-718ddbbe5fef/ENCFF402CWL.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF475UCG bam bam unfiltered alignments GRCh38 ENCSR680YNB Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF002EHD/, /files/ENCFF002DTX/ 7555128673 ENCODE Processing Pipeline 12f5bc40012c2a13a6ae39c5d6fb3e27 https://www.encodeproject.org/files/ENCFF475UCG/@@download/ENCFF475UCG.bam released s3://encode-public/2020/06/13/0f872004-c6e1-4ccf-982d-9603a55f8260/ENCFF475UCG.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF963MGG fastq fastq reads ENCSR542LGX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF815BQQ/ 3991320210 Michael Snyder, Stanford 56ad6ec6ae8e54ce1c766c58fff87118 SRA:SRR14105618 https://www.encodeproject.org/files/ENCFF963MGG/@@download/ENCFF963MGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/13/23b5abd6-2110-4592-b463-c1367f4b3342/ENCFF963MGG.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF815BQQ fastq fastq reads ENCSR542LGX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF963MGG/ 4418123893 Michael Snyder, Stanford 104d1c249805052c77b968b6c4404010 SRA:SRR14105618 https://www.encodeproject.org/files/ENCFF815BQQ/@@download/ENCFF815BQQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/13/19a614a1-6b97-4ec2-8e06-dc2cc0001363/ENCFF815BQQ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF393ATP bam bam unfiltered alignments GRCh38 ENCSR542LGX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF963MGG/, /files/ENCFF815BQQ/ 7985848275 ENCODE Processing Pipeline 4484849d1435ea37eaabeb489e36220c https://www.encodeproject.org/files/ENCFF393ATP/@@download/ENCFF393ATP.bam released s3://encode-public/2020/04/21/d53c0391-e3d9-4de4-8fbf-e42d1b4940e5/ENCFF393ATP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF782LFF bam bam alignments GRCh38 ENCSR542LGX Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF963MGG/, /files/ENCFF815BQQ/ 4499977191 ENCODE Processing Pipeline da8ff2d7afbebae70b66a5b14f73f473 https://www.encodeproject.org/files/ENCFF782LFF/@@download/ENCFF782LFF.bam released s3://encode-public/2020/04/21/0612a704-58a3-45cd-b419-148a3ae36bb5/ENCFF782LFF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF520IQT bam bam unfiltered alignments hg19 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFC/, /files/ENCFF807MUK/, /files/ENCFF002EFE/ 7409368627 ENCODE Processing Pipeline f7e33e0ce8426e5d50ef57a8a537b53d https://www.encodeproject.org/files/ENCFF520IQT/@@download/ENCFF520IQT.bam released s3://encode-public/2018/02/21/4cdf1863-e437-4f28-afcb-0a19ef1091a8/ENCFF520IQT.bam ENCODE3 hg19 archived ENCFF585LHK bam bam unfiltered alignments hg19 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFB/, /files/ENCFF002EEZ/, /files/ENCFF807MUK/ 6412295535 ENCODE Processing Pipeline 036c4e49086ab8fd2413432a623bef77 https://www.encodeproject.org/files/ENCFF585LHK/@@download/ENCFF585LHK.bam released s3://encode-public/2018/02/22/9477abea-3649-44bb-82f2-fdc8503287ef/ENCFF585LHK.bam ENCODE3 hg19 archived ENCFF002EEZ fastq fastq reads ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EFB/ 2818636844 Michael Snyder, Stanford eaba46e01a30c75bbc75ab75479d9b79 SRA:SRR5111147 https://www.encodeproject.org/files/ENCFF002EEZ/@@download/ENCFF002EEZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/25acd884-aaf4-48bf-ac52-14214e459053/ENCFF002EEZ.fastq.gz ENCFF002EFB fastq fastq reads ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EEZ/ 2844759527 Michael Snyder, Stanford f2b3041f70f363ab056b58fc28921c56 SRA:SRR5111147 https://www.encodeproject.org/files/ENCFF002EFB/@@download/ENCFF002EFB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/2bf05f0d-856f-4933-bdca-5a89398dfd19/ENCFF002EFB.fastq.gz ENCFF002EFC fastq fastq reads ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EFE/ 3322701717 Michael Snyder, Stanford 3e05c866bd52eb3c02d881f7f0013473 SRA:SRR5111146 https://www.encodeproject.org/files/ENCFF002EFC/@@download/ENCFF002EFC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/67ee6b1a-e09f-471d-a218-de44e37a664f/ENCFF002EFC.fastq.gz ENCFF002EFE fastq fastq reads ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EFC/ 3296650180 Michael Snyder, Stanford b1ef70f200e9961a21e533261f9509ad SRA:SRR5111146 https://www.encodeproject.org/files/ENCFF002EFE/@@download/ENCFF002EFE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/703111da-4043-44aa-b969-6362811e491e/ENCFF002EFE.fastq.gz ENCFF449NNE bam bam alignments hg19 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFC/, /files/ENCFF807MUK/, /files/ENCFF002EFE/ 6566591450 ENCODE Processing Pipeline 1cc9640dbd96ade7359901e9a27ab503 https://www.encodeproject.org/files/ENCFF449NNE/@@download/ENCFF449NNE.bam released s3://encode-public/2015/10/28/e2a26f50-0c27-419c-84f9-c4f60df092ff/ENCFF449NNE.bam ENCODE3 hg19 archived ENCFF999EQI bam bam alignments hg19 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFB/, /files/ENCFF002EEZ/, /files/ENCFF807MUK/ 5621390297 ENCODE Processing Pipeline 7d6561e626da47898ee5ba1d50646730 https://www.encodeproject.org/files/ENCFF999EQI/@@download/ENCFF999EQI.bam released s3://encode-public/2015/10/28/062ab110-7244-4d96-9ab4-a72196ab0120/ENCFF999EQI.bam ENCODE3 hg19 archived ENCFF068WBC bam bam unfiltered alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFB/, /files/ENCFF002EEZ/, /files/ENCFF643CGH/ 6431972731 ENCODE Processing Pipeline 1ef750e0e4e051113473baf9848cab6f https://www.encodeproject.org/files/ENCFF068WBC/@@download/ENCFF068WBC.bam released s3://encode-public/2016/05/06/78b74f6c-175e-4247-97fa-8358c0d87127/ENCFF068WBC.bam ENCODE3 GRCh38 archived ENCFF044SKY bam bam unfiltered alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFC/, /files/ENCFF643CGH/, /files/ENCFF002EFE/ 7429839557 ENCODE Processing Pipeline 640f8c18591390cd3fda3382ab2aa3d6 https://www.encodeproject.org/files/ENCFF044SKY/@@download/ENCFF044SKY.bam released s3://encode-public/2016/05/06/e672d6b2-4b76-4999-86d5-2ee370d7a1a8/ENCFF044SKY.bam ENCODE3 GRCh38 archived ENCFF950AXC bam bam alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFB/, /files/ENCFF002EEZ/, /files/ENCFF643CGH/ 5634546926 ENCODE Processing Pipeline dec42aa95365343bf690445778aa5fa0 https://www.encodeproject.org/files/ENCFF950AXC/@@download/ENCFF950AXC.bam released s3://encode-public/2016/05/06/fc96ad55-e5a1-4147-a07b-e3007ae528fe/ENCFF950AXC.bam ENCODE3 GRCh38 archived ENCFF190EPQ bam bam alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF002EFC/, /files/ENCFF643CGH/, /files/ENCFF002EFE/ 6579837306 ENCODE Processing Pipeline f89721350e551200442c82e847621fdd https://www.encodeproject.org/files/ENCFF190EPQ/@@download/ENCFF190EPQ.bam released s3://encode-public/2016/05/06/e39d4978-00f1-4834-a453-9751c804aba6/ENCFF190EPQ.bam ENCODE3 GRCh38 archived ENCFF235RAS bam bam unfiltered alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EFC/, /files/ENCFF110MCL/, /files/ENCFF002EFE/ 7345723805 ENCODE Processing Pipeline 1c2b6e87480677b9761a1cf2c79dc305 https://www.encodeproject.org/files/ENCFF235RAS/@@download/ENCFF235RAS.bam released s3://encode-public/2020/06/13/6abcb0cf-6978-4ab1-bc96-c013cbd8ac90/ENCFF235RAS.bam ENCODE4 v1.4.0 GRCh38 released ENCFF622QQU bam bam alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EFC/, /files/ENCFF110MCL/, /files/ENCFF002EFE/ 5999335221 ENCODE Processing Pipeline bc45451fc4ad60a94e7b5169b992596d https://www.encodeproject.org/files/ENCFF622QQU/@@download/ENCFF622QQU.bam released s3://encode-public/2020/06/13/ce3f330d-d3ed-4825-87cd-4789bd00979d/ENCFF622QQU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF243SVA bam bam alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFB/, /files/ENCFF110MCL/, /files/ENCFF002EEZ/ 5145155109 ENCODE Processing Pipeline bd3c9701077d9511a4fd765d69c44280 https://www.encodeproject.org/files/ENCFF243SVA/@@download/ENCFF243SVA.bam released s3://encode-public/2020/06/13/f95358b0-104a-4bd7-8b3d-7ffc1bd90a37/ENCFF243SVA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF338PKK bam bam unfiltered alignments GRCh38 ENCSR121CWV Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFB/, /files/ENCFF110MCL/, /files/ENCFF002EEZ/ 6363169482 ENCODE Processing Pipeline bd13eba26146f78a7a34f856ed2c154e https://www.encodeproject.org/files/ENCFF338PKK/@@download/ENCFF338PKK.bam released s3://encode-public/2020/06/13/75f32e76-c6ba-44fd-8258-0c289603b53c/ENCFF338PKK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF002EFQ fastq fastq reads ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF002EFT/ 3749786891 Michael Snyder, Stanford a8101a408a4be70300fc77a38fe4903a SRA:SRR5111557 https://www.encodeproject.org/files/ENCFF002EFQ/@@download/ENCFF002EFQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/59bbdbad-e826-491d-a0b1-4831fac990d6/ENCFF002EFQ.fastq.gz mild to moderate bottlenecking ENCFF002EFS fastq fastq reads ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF002EFU/ 3586855384 Michael Snyder, Stanford bca3854130f675e114868f32525d6bd2 SRA:SRR5111556 https://www.encodeproject.org/files/ENCFF002EFS/@@download/ENCFF002EFS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/b00fe86f-66b6-49e9-9cb6-ee2da49f785f/ENCFF002EFS.fastq.gz mild to moderate bottlenecking ENCFF002EFT fastq fastq reads ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF002EFQ/ 3701841167 Michael Snyder, Stanford 28940a09b95177389c86e0baf05964ad SRA:SRR5111557 https://www.encodeproject.org/files/ENCFF002EFT/@@download/ENCFF002EFT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/9d4b0322-2544-4ed9-a7c7-ff3939eeeeaf/ENCFF002EFT.fastq.gz mild to moderate bottlenecking ENCFF002EFU fastq fastq reads ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF002EFS/ 3542843697 Michael Snyder, Stanford ac70ec5b2e248f3e919f2355663170cb SRA:SRR5111556 https://www.encodeproject.org/files/ENCFF002EFU/@@download/ENCFF002EFU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/07/04/a9549337-3867-4637-88be-1fd7c26fe1ba/ENCFF002EFU.fastq.gz mild to moderate bottlenecking ENCFF287SKW bam bam alignments hg19 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFS/, /files/ENCFF807MUK/, /files/ENCFF002EFU/ 6388286254 ENCODE Processing Pipeline 51cf6561a9d6cf89c77c653ced1474cb https://www.encodeproject.org/files/ENCFF287SKW/@@download/ENCFF287SKW.bam released s3://encode-public/2015/10/28/0e73c3b8-d90e-435c-a8be-4c128c8b7ba9/ENCFF287SKW.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF941TZZ bam bam alignments hg19 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFQ/, /files/ENCFF002EFT/ 6749400571 ENCODE Processing Pipeline 0fcaab98a7484ab8756dde99f4c7c953 https://www.encodeproject.org/files/ENCFF941TZZ/@@download/ENCFF941TZZ.bam released s3://encode-public/2015/10/28/526f0f6a-a215-4b92-8207-cea09f143128/ENCFF941TZZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF479AQE bam bam unfiltered alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFQ/, /files/ENCFF002EFT/ 8078625888 ENCODE Processing Pipeline c1daa6cdeaff731737486c2fc8bffce3 https://www.encodeproject.org/files/ENCFF479AQE/@@download/ENCFF479AQE.bam released s3://encode-public/2016/05/06/217d7a1e-c928-46eb-bd85-54f486e5c19f/ENCFF479AQE.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF263UJA bam bam unfiltered alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFS/, /files/ENCFF643CGH/, /files/ENCFF002EFU/ 7734459719 ENCODE Processing Pipeline e75f3106507a69d46dae83e0dc1ccf47 https://www.encodeproject.org/files/ENCFF263UJA/@@download/ENCFF263UJA.bam released s3://encode-public/2016/05/06/4a2986a2-61c7-4830-b1c9-8b0067b009cb/ENCFF263UJA.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF574BGV bam bam alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFS/, /files/ENCFF643CGH/, /files/ENCFF002EFU/ 6442473371 ENCODE Processing Pipeline 71a6984c7a565eb8b05351ef8ed84efe https://www.encodeproject.org/files/ENCFF574BGV/@@download/ENCFF574BGV.bam released s3://encode-public/2016/05/06/6622ff5c-f9f2-4c2d-9bb7-e6e4c9acad1c/ENCFF574BGV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF879YMO bam bam alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF002EFQ/, /files/ENCFF002EFT/ 6769807591 ENCODE Processing Pipeline b487554ee3e741c3bbcc0bd749e5e05b https://www.encodeproject.org/files/ENCFF879YMO/@@download/ENCFF879YMO.bam released s3://encode-public/2016/05/06/f061244b-9a08-431e-8df0-51bf193917bf/ENCFF879YMO.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF429DYF bam bam unfiltered alignments hg19 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 101 /files/ENCFF002EFS/, /files/ENCFF807MUK/, /files/ENCFF002EFU/ 7730848727 ENCODE Processing Pipeline 12798bd6a52e5c43255a6134cca8bd46 https://www.encodeproject.org/files/ENCFF429DYF/@@download/ENCFF429DYF.bam released s3://encode-public/2016/08/23/afcb571a-8a03-45a0-b85e-f93bff28ad90/ENCFF429DYF.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF223PIT bam bam unfiltered alignments hg19 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF002EFQ/, /files/ENCFF002EFT/ 8064501411 ENCODE Processing Pipeline db8aad4debc16248b082a971b4aace08 https://www.encodeproject.org/files/ENCFF223PIT/@@download/ENCFF223PIT.bam released s3://encode-public/2016/08/23/cf01f86a-03d7-4eed-9644-b9a57acf5f89/ENCFF223PIT.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF611CPT bam bam unfiltered alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EFT/, /files/ENCFF002EFQ/, /files/ENCFF110MCL/ 7984307801 ENCODE Processing Pipeline a9862cdc48377b4cbb85b29298623140 https://www.encodeproject.org/files/ENCFF611CPT/@@download/ENCFF611CPT.bam released s3://encode-public/2020/06/13/f76d6b47-d1aa-4161-a16e-9223f4852dfa/ENCFF611CPT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF841YBE bam bam unfiltered alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFU/, /files/ENCFF002EFS/, /files/ENCFF110MCL/ 7644417497 ENCODE Processing Pipeline ee0e9f163d87df823beb3a469d7af184 https://www.encodeproject.org/files/ENCFF841YBE/@@download/ENCFF841YBE.bam released s3://encode-public/2020/06/13/4ac9a364-14bd-43c7-8b40-f78b6e5df012/ENCFF841YBE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF783FZL bam bam alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 1 1_1 100 /files/ENCFF002EFT/, /files/ENCFF002EFQ/, /files/ENCFF110MCL/ 6403354149 ENCODE Processing Pipeline ece0b0160ba13b88cdc002b2344dba57 https://www.encodeproject.org/files/ENCFF783FZL/@@download/ENCFF783FZL.bam released s3://encode-public/2020/06/13/616d0c1e-50c0-4345-a9b0-78a12b5b09b1/ENCFF783FZL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF526WYZ bam bam alignments GRCh38 ENCSR398JTO Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens DNA 2014-07-07 ENCODE 450-650 2 2_1 100 /files/ENCFF002EFU/, /files/ENCFF002EFS/, /files/ENCFF110MCL/ 6088530109 ENCODE Processing Pipeline 1ab5b9a515ac74cf35fc6ba1a417776e https://www.encodeproject.org/files/ENCFF526WYZ/@@download/ENCFF526WYZ.bam released s3://encode-public/2020/06/13/c5c927b4-5f22-43cc-93b5-a5914b6d34c1/ENCFF526WYZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF473SIJ fastq fastq reads ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 185902482 Michael Snyder, Stanford fc4a88a597520e3fa035c389c6ec3e21 https://www.encodeproject.org/files/ENCFF473SIJ/@@download/ENCFF473SIJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/8395ec8c-e4f5-462b-bc0b-a22d22e5b741/ENCFF473SIJ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF431YVV fastq fastq reads ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 111623790 Michael Snyder, Stanford 2253ae51c3613d3a5461902d5d202458 https://www.encodeproject.org/files/ENCFF431YVV/@@download/ENCFF431YVV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/eca63205-6425-4c2e-b3ab-ce7ade5833cf/ENCFF431YVV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF070QWS bam bam alignments ce10 ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF431YVV/, /files/ENCFF473SIJ/, /files/ENCFF987UMF/ 329253914 Kevin White, UChicago 1ff0457e9f667d38eccc0e66eac3f9af https://www.encodeproject.org/files/ENCFF070QWS/@@download/ENCFF070QWS.bam released s3://encode-public/2017/04/27/fb36705d-42f2-4137-a965-18600c49f780/ENCFF070QWS.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF779GPB bam bam alignments ce11 ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF431YVV/, /files/ENCFF473SIJ/, /files/ENCFF586MOL/ 329536192 Kevin White, UChicago 668d86a7646cc05080abe144caa096ba https://www.encodeproject.org/files/ENCFF779GPB/@@download/ENCFF779GPB.bam released s3://encode-public/2017/04/27/be3d9f50-bc48-4a02-9069-b9ce8879afab/ENCFF779GPB.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF324YIQ bigWig bigWig signal of unique reads ce10 ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF070QWS/ 10004539 Kevin White, UChicago 4db9b98296b0691020d89a0ea5b5f97d https://www.encodeproject.org/files/ENCFF324YIQ/@@download/ENCFF324YIQ.bigWig released s3://encode-public/2017/04/29/7123269a-e420-4993-b10f-bb33eb01ffab/ENCFF324YIQ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF192KYP bigWig bigWig read-depth normalized signal ce10 ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF070QWS/ 10045809 Kevin White, UChicago a33431c3bddb231c4ba73a082afc2a55 https://www.encodeproject.org/files/ENCFF192KYP/@@download/ENCFF192KYP.bigWig released s3://encode-public/2017/04/29/0b9e28b7-5ddc-4410-acc2-81668a250814/ENCFF192KYP.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF507ZFW bigWig bigWig signal of unique reads ce11 ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF779GPB/ 10009073 Kevin White, UChicago 94217a045f33ac83e71888717df9bced https://www.encodeproject.org/files/ENCFF507ZFW/@@download/ENCFF507ZFW.bigWig released s3://encode-public/2017/04/29/bc59842d-d637-4f0c-bdce-3a833de8db79/ENCFF507ZFW.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF623YWJ bigWig bigWig read-depth normalized signal ce11 ENCSR014QVQ Control ChIP-seq /worm-donors/ENCDO850TMS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/174458/'], '@type': ['Target', 'Item'], 'name': 'dpl-1-celegans', 'label': 'dpl-1', '@id': '/targets/dpl-1-celegans/', 'title': 'dpl-1 (Caenorhabditis elegans)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'f8f229e8-7407-47fd-9e80-625b97d4ffea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF779GPB/ 10046019 Kevin White, UChicago 71bd2290f657b22a14aac763c4f792aa https://www.encodeproject.org/files/ENCFF623YWJ/@@download/ENCFF623YWJ.bigWig released s3://encode-public/2017/04/29/dd8b3332-5b5d-457a-8543-0eef0318bd50/ENCFF623YWJ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF118EXG fastq fastq reads ENCSR591CMN Control ChIP-seq /fly-donors/ENCDO677CKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41199/'], '@type': ['Target', 'Item'], 'name': 'topi-dmelanogaster', 'label': 'topi', '@id': '/targets/topi-dmelanogaster/', 'title': 'topi (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '17f02c17-4bdc-46ec-9f6f-7761bb7eea2c', 'status': 'released'} dm3 3R 5588594 5613287 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 971135181 Kevin White, UChicago 780fa26ed23fa91c02b24d1d2f83651f https://www.encodeproject.org/files/ENCFF118EXG/@@download/ENCFF118EXG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/aed6b81f-d43d-4074-9040-78111acec8a1/ENCFF118EXG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF838MYA bam bam alignments dm3 ENCSR591CMN Control ChIP-seq /fly-donors/ENCDO677CKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41199/'], '@type': ['Target', 'Item'], 'name': 'topi-dmelanogaster', 'label': 'topi', '@id': '/targets/topi-dmelanogaster/', 'title': 'topi (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '17f02c17-4bdc-46ec-9f6f-7761bb7eea2c', 'status': 'released'} dm3 3R 5588594 5613287 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF118EXG/ 1406342119 Kevin White, UChicago 6db9b7da0159f33988810579a81a3a1a https://www.encodeproject.org/files/ENCFF838MYA/@@download/ENCFF838MYA.bam released s3://encode-public/2015/08/03/822c73be-ae2e-42b1-90bd-7e77330b3b0f/ENCFF838MYA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF408NEX bigWig bigWig read-depth normalized signal dm3 ENCSR591CMN Control ChIP-seq /fly-donors/ENCDO677CKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41199/'], '@type': ['Target', 'Item'], 'name': 'topi-dmelanogaster', 'label': 'topi', '@id': '/targets/topi-dmelanogaster/', 'title': 'topi (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '17f02c17-4bdc-46ec-9f6f-7761bb7eea2c', 'status': 'released'} dm3 3R 5588594 5613287 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF838MYA/ 15320633 Kevin White, UChicago 263df14c694a9c8cbfb93a2daa447cd3 https://www.encodeproject.org/files/ENCFF408NEX/@@download/ENCFF408NEX.bigWig released s3://encode-public/2015/10/06/2ae4f2d5-f746-4033-8819-7b138e1f6141/ENCFF408NEX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF784EMY bigWig bigWig signal of unique reads dm3 ENCSR591CMN Control ChIP-seq /fly-donors/ENCDO677CKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41199/'], '@type': ['Target', 'Item'], 'name': 'topi-dmelanogaster', 'label': 'topi', '@id': '/targets/topi-dmelanogaster/', 'title': 'topi (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '17f02c17-4bdc-46ec-9f6f-7761bb7eea2c', 'status': 'released'} dm3 3R 5588594 5613287 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF838MYA/ 15318078 Kevin White, UChicago 2bb14a44e7fa8da92fb23bcc8c1dbfec https://www.encodeproject.org/files/ENCFF784EMY/@@download/ENCFF784EMY.bigWig released s3://encode-public/2015/10/06/acd8a151-5ddb-4597-a656-b58babc37cbc/ENCFF784EMY.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF585KXL bam bam alignments dm6 ENCSR591CMN Control ChIP-seq /fly-donors/ENCDO677CKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41199/'], '@type': ['Target', 'Item'], 'name': 'topi-dmelanogaster', 'label': 'topi', '@id': '/targets/topi-dmelanogaster/', 'title': 'topi (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '17f02c17-4bdc-46ec-9f6f-7761bb7eea2c', 'status': 'released'} dm3 3R 5588594 5613287 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF118EXG/ 1402993674 Kevin White, UChicago cbd3d62116ce0180812fd794ff2b15eb https://www.encodeproject.org/files/ENCFF585KXL/@@download/ENCFF585KXL.bam released s3://encode-public/2016/04/22/53799392-fd54-483d-8fb2-ac53f22d8e6a/ENCFF585KXL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF792IRV bigWig bigWig read-depth normalized signal dm6 ENCSR591CMN Control ChIP-seq /fly-donors/ENCDO677CKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41199/'], '@type': ['Target', 'Item'], 'name': 'topi-dmelanogaster', 'label': 'topi', '@id': '/targets/topi-dmelanogaster/', 'title': 'topi (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '17f02c17-4bdc-46ec-9f6f-7761bb7eea2c', 'status': 'released'} dm3 3R 5588594 5613287 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF585KXL/ 17446654 Kevin White, UChicago 7d928520e7b7a0537bc6c7270db89d69 https://www.encodeproject.org/files/ENCFF792IRV/@@download/ENCFF792IRV.bigWig released s3://encode-public/2016/06/21/fcfc7667-9d1d-4b28-b30e-21166ccc88d3/ENCFF792IRV.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF844DKZ bigWig bigWig signal of unique reads dm6 ENCSR591CMN Control ChIP-seq /fly-donors/ENCDO677CKB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41199/'], '@type': ['Target', 'Item'], 'name': 'topi-dmelanogaster', 'label': 'topi', '@id': '/targets/topi-dmelanogaster/', 'title': 'topi (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '17f02c17-4bdc-46ec-9f6f-7761bb7eea2c', 'status': 'released'} dm3 3R 5588594 5613287 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF585KXL/ 17436896 Kevin White, UChicago a761c3b21946ff4db6145056ed229b1d https://www.encodeproject.org/files/ENCFF844DKZ/@@download/ENCFF844DKZ.bigWig released s3://encode-public/2016/06/21/abf071af-751f-470f-a27b-8834a9e0039d/ENCFF844DKZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF818CWP fastq fastq reads ENCSR233HNT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF236EZA/ 2864571255 Michael Snyder, Stanford dbfed3e41ca3a28c65ec4b3fdb5c4958 SRA:SRR14103382 https://www.encodeproject.org/files/ENCFF818CWP/@@download/ENCFF818CWP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/14/2c38f10d-ee43-48a6-9aa3-5b39831c4dbe/ENCFF818CWP.fastq.gz ENCFF236EZA fastq fastq reads ENCSR233HNT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF818CWP/ 2527131082 Michael Snyder, Stanford 93f2d6e5fd25dbd4049bd795696421c6 SRA:SRR14103382 https://www.encodeproject.org/files/ENCFF236EZA/@@download/ENCFF236EZA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/14/ebc07853-321e-4e03-a258-2c79cc772a4a/ENCFF236EZA.fastq.gz ENCFF963BNQ bam bam unfiltered alignments GRCh38 ENCSR233HNT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF236EZA/, /files/ENCFF818CWP/ 5410650003 ENCODE Processing Pipeline 96ba153bcf09c1a387c44208490c8a1f https://www.encodeproject.org/files/ENCFF963BNQ/@@download/ENCFF963BNQ.bam released s3://encode-public/2020/04/21/18321c13-e628-4341-817a-600f179d7d7d/ENCFF963BNQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF631MQN bam bam alignments GRCh38 ENCSR233HNT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF236EZA/, /files/ENCFF818CWP/ 4399606500 ENCODE Processing Pipeline da1da0db0f5cdf43ed2b5ba915ecbd63 https://www.encodeproject.org/files/ENCFF631MQN/@@download/ENCFF631MQN.bam released s3://encode-public/2020/04/21/96918034-5ec7-4f72-b5e8-51f2d2770a76/ENCFF631MQN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF809ANU fastq fastq reads ENCSR712UWN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF797LSS/ 2898991768 Michael Snyder, Stanford f214a6a0e4b80d8d5a9f8753b41ace14 SRA:SRR14846108 https://www.encodeproject.org/files/ENCFF809ANU/@@download/ENCFF809ANU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/06/01/0e4dcba8-e45e-47e1-a811-cc2bfca36088/ENCFF809ANU.fastq.gz mild to moderate bottlenecking ENCFF797LSS fastq fastq reads ENCSR712UWN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF809ANU/ 3077436040 Michael Snyder, Stanford f639873cc4af4f9b19a142d0958278e3 SRA:SRR14846108 https://www.encodeproject.org/files/ENCFF797LSS/@@download/ENCFF797LSS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/06/01/db98e462-77ab-42e0-9297-2d558e2a8c5c/ENCFF797LSS.fastq.gz mild to moderate bottlenecking ENCFF572VRT bam bam alignments GRCh38 ENCSR712UWN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF809ANU/, /files/ENCFF797LSS/ 4540786342 ENCODE Processing Pipeline ddcd5d44b32d72dc6e843463653db7c2 https://www.encodeproject.org/files/ENCFF572VRT/@@download/ENCFF572VRT.bam released s3://encode-public/2020/06/02/ae0fdb5d-e3d0-4b15-8b8d-ee7604f7f6af/ENCFF572VRT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF490MLQ bam bam unfiltered alignments GRCh38 ENCSR712UWN Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF809ANU/, /files/ENCFF797LSS/ 5706915913 ENCODE Processing Pipeline 7b45cdde375533760daadbd3af4ac1d5 https://www.encodeproject.org/files/ENCFF490MLQ/@@download/ENCFF490MLQ.bam released s3://encode-public/2020/06/02/24ee5b56-8700-469a-b4fb-9933266c55af/ENCFF490MLQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF928AHZ fastq fastq reads ENCSR596UEF Control ChIP-seq /fly-donors/ENCDO965PCR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33229/'], '@type': ['Target', 'Item'], 'name': 'Ets21C-dmelanogaster', 'label': 'Ets21C', '@id': '/targets/Ets21C-dmelanogaster/', 'title': 'Ets21C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '634b7d31-ade2-4ab2-8bc0-e4e510c2d53e', 'status': 'released'} dm3 2L 502026 576928 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 785865179 Kevin White, UChicago e7becf2f2c8f29864a5b0811e74010d4 https://www.encodeproject.org/files/ENCFF928AHZ/@@download/ENCFF928AHZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/554dd93e-c0cc-4345-bc53-308aae9dda7a/ENCFF928AHZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF844OGB bam bam alignments dm3 ENCSR596UEF Control ChIP-seq /fly-donors/ENCDO965PCR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33229/'], '@type': ['Target', 'Item'], 'name': 'Ets21C-dmelanogaster', 'label': 'Ets21C', '@id': '/targets/Ets21C-dmelanogaster/', 'title': 'Ets21C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '634b7d31-ade2-4ab2-8bc0-e4e510c2d53e', 'status': 'released'} dm3 2L 502026 576928 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF928AHZ/ 1126805381 Kevin White, UChicago 2b0e5aacbceaf15eaf2d49ba81198b00 https://www.encodeproject.org/files/ENCFF844OGB/@@download/ENCFF844OGB.bam released s3://encode-public/2015/08/03/4794e111-8862-4786-a0a2-ff6120350379/ENCFF844OGB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF679GBC bigWig bigWig read-depth normalized signal dm3 ENCSR596UEF Control ChIP-seq /fly-donors/ENCDO965PCR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33229/'], '@type': ['Target', 'Item'], 'name': 'Ets21C-dmelanogaster', 'label': 'Ets21C', '@id': '/targets/Ets21C-dmelanogaster/', 'title': 'Ets21C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '634b7d31-ade2-4ab2-8bc0-e4e510c2d53e', 'status': 'released'} dm3 2L 502026 576928 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF844OGB/ 15294310 Kevin White, UChicago f595c0b010bcd1945e3d80c5468d256c https://www.encodeproject.org/files/ENCFF679GBC/@@download/ENCFF679GBC.bigWig released s3://encode-public/2015/10/06/352ea636-e190-49a4-a06d-59e60b74fca3/ENCFF679GBC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF989XHG bigWig bigWig signal of unique reads dm3 ENCSR596UEF Control ChIP-seq /fly-donors/ENCDO965PCR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33229/'], '@type': ['Target', 'Item'], 'name': 'Ets21C-dmelanogaster', 'label': 'Ets21C', '@id': '/targets/Ets21C-dmelanogaster/', 'title': 'Ets21C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '634b7d31-ade2-4ab2-8bc0-e4e510c2d53e', 'status': 'released'} dm3 2L 502026 576928 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF844OGB/ 15291294 Kevin White, UChicago e9a345759b9db1d78f4b357c4e0886b9 https://www.encodeproject.org/files/ENCFF989XHG/@@download/ENCFF989XHG.bigWig released s3://encode-public/2015/10/06/880fac05-a3cc-437f-8202-899b453237d3/ENCFF989XHG.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF850BFY bam bam alignments dm6 ENCSR596UEF Control ChIP-seq /fly-donors/ENCDO965PCR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33229/'], '@type': ['Target', 'Item'], 'name': 'Ets21C-dmelanogaster', 'label': 'Ets21C', '@id': '/targets/Ets21C-dmelanogaster/', 'title': 'Ets21C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '634b7d31-ade2-4ab2-8bc0-e4e510c2d53e', 'status': 'released'} dm3 2L 502026 576928 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF928AHZ/ 1124402249 Kevin White, UChicago 4bc954e96b41f227e924740f5515608d https://www.encodeproject.org/files/ENCFF850BFY/@@download/ENCFF850BFY.bam released s3://encode-public/2016/04/21/b4569305-0e7d-4b9f-9949-ff831e00596b/ENCFF850BFY.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF623QMQ bigWig bigWig signal of unique reads dm6 ENCSR596UEF Control ChIP-seq /fly-donors/ENCDO965PCR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33229/'], '@type': ['Target', 'Item'], 'name': 'Ets21C-dmelanogaster', 'label': 'Ets21C', '@id': '/targets/Ets21C-dmelanogaster/', 'title': 'Ets21C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '634b7d31-ade2-4ab2-8bc0-e4e510c2d53e', 'status': 'released'} dm3 2L 502026 576928 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF850BFY/ 17366378 Kevin White, UChicago 4684749ec189f698d2feb3436afc39c0 https://www.encodeproject.org/files/ENCFF623QMQ/@@download/ENCFF623QMQ.bigWig released s3://encode-public/2016/06/20/19ccacf1-d30c-44ce-9b8d-baa3ee8c6dce/ENCFF623QMQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF055VBT bigWig bigWig read-depth normalized signal dm6 ENCSR596UEF Control ChIP-seq /fly-donors/ENCDO965PCR/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/33229/'], '@type': ['Target', 'Item'], 'name': 'Ets21C-dmelanogaster', 'label': 'Ets21C', '@id': '/targets/Ets21C-dmelanogaster/', 'title': 'Ets21C (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '634b7d31-ade2-4ab2-8bc0-e4e510c2d53e', 'status': 'released'} dm3 2L 502026 576928 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF850BFY/ 17380522 Kevin White, UChicago a77757ec71b8f59d6f612f053fe05a43 https://www.encodeproject.org/files/ENCFF055VBT/@@download/ENCFF055VBT.bigWig released s3://encode-public/2016/06/20/35e73582-020b-4033-b349-d75b49a28aab/ENCFF055VBT.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF956EVB fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 381851991 Bradley Bernstein, Broad 13a10c09ed9091262057c142a4b534c2 SRA:SRR13804614 https://www.encodeproject.org/files/ENCFF956EVB/@@download/ENCFF956EVB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b1b0bd0f-7553-4568-b894-bcc15333d2df/ENCFF956EVB.fastq.gz ENCFF748ZWH fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 384577244 Bradley Bernstein, Broad 64195e606133c67894693543ed21a28c SRA:SRR13804615 https://www.encodeproject.org/files/ENCFF748ZWH/@@download/ENCFF748ZWH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/0e396a2b-9708-430b-a9a9-3816e21836ba/ENCFF748ZWH.fastq.gz ENCFF151IBZ fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 372845392 Bradley Bernstein, Broad e996fec5633fb756dec504dc6af99c19 SRA:SRR13804616 https://www.encodeproject.org/files/ENCFF151IBZ/@@download/ENCFF151IBZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/504a14a6-b0a6-47dd-b6db-76615c60cac4/ENCFF151IBZ.fastq.gz ENCFF894DWC fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 537053932 Bradley Bernstein, Broad ddaf320cf33ad7a784264244dd79cf87 SRA:SRR13804618 https://www.encodeproject.org/files/ENCFF894DWC/@@download/ENCFF894DWC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/0f0239c7-1806-444e-aa24-c880b7713863/ENCFF894DWC.fastq.gz ENCFF983YLP fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 563705413 Bradley Bernstein, Broad ce9c58004dd4e0c6e3a4f42b102dc7e4 SRA:SRR13804619 https://www.encodeproject.org/files/ENCFF983YLP/@@download/ENCFF983YLP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2b958dbc-ce58-4b95-add3-37596cedb3e8/ENCFF983YLP.fastq.gz ENCFF411KXL fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 380562852 Bradley Bernstein, Broad 8e5cf38f20c8c677288a322bdb545427 SRA:SRR13804617 https://www.encodeproject.org/files/ENCFF411KXL/@@download/ENCFF411KXL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ea10b3b0-4a01-4577-bc16-1c19b21b77e5/ENCFF411KXL.fastq.gz ENCFF288PTJ fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 564139742 Bradley Bernstein, Broad 85e02f21da6fdc300ac5650ed8bcfdca SRA:SRR13804620 https://www.encodeproject.org/files/ENCFF288PTJ/@@download/ENCFF288PTJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/049bf57d-d3cb-4ebc-a8d2-938532a5c122/ENCFF288PTJ.fastq.gz ENCFF373ICD fastq fastq reads ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 554977814 Bradley Bernstein, Broad 102274df97a6d1a3b0bd8a8a42db2e33 SRA:SRR13804621 https://www.encodeproject.org/files/ENCFF373ICD/@@download/ENCFF373ICD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/fb27a77b-859a-4043-a4ea-d03f65a3f569/ENCFF373ICD.fastq.gz ENCFF483IDW bam bam alignments GRCh38 ENCSR936CZX Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF373ICD/, /files/ENCFF110MCL/, /files/ENCFF151IBZ/, /files/ENCFF288PTJ/, /files/ENCFF748ZWH/, /files/ENCFF983YLP/, /files/ENCFF894DWC/, 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GRCh38 ENCSR664JMX Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002451 mammary stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF149BTS/ 132342744 ENCODE Processing Pipeline 08b2004efbf040c0e22fdc91d28d021e https://www.encodeproject.org/files/ENCFF204XIX/@@download/ENCFF204XIX.bam released s3://encode-public/2017/11/09/92d92c79-c9f2-4e3f-bf12-c1368a9a2bbe/ENCFF204XIX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth poor library complexity, severe bottlenecking ENCFF650QMD bam bam redacted unfiltered alignments GRCh38 ENCSR664JMX Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002451 mammary stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF149BTS/ 340925706 ENCODE Processing Pipeline fbfec47774307e816f54bf15383f5ee9 https://www.encodeproject.org/files/ENCFF650QMD/@@download/ENCFF650QMD.bam released s3://encode-public/2017/11/09/54138772-136c-4e6d-b4ed-522e6bb0cdb9/ENCFF650QMD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth poor library complexity, severe bottlenecking ENCFF106QQJ bam bam redacted unfiltered alignments hg19 ENCSR664JMX Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002451 mammary stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF149BTS/ 334950807 ENCODE Processing Pipeline f6fe337600175ac5b1b1d79a1e1d8e95 https://www.encodeproject.org/files/ENCFF106QQJ/@@download/ENCFF106QQJ.bam released s3://encode-public/2018/01/20/c3c45ae4-54fc-421d-9f6d-b1a828231dae/ENCFF106QQJ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth poor library complexity, severe bottlenecking ENCFF954GSE bam bam redacted alignments hg19 ENCSR664JMX Control ChIP-seq /human-donors/ENCDO819SJC/ CL:0002451 mammary stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, 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ENCSR715EHB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1731'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5915/'], '@type': ['Target', 'Item'], 'name': 'RARB-human', 'label': 'RARB', '@id': '/targets/RARB-human/', 'title': 'RARB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98996f4-bbf7-4c11-93a1-5df8ba198cc4', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF315PEI/ 2410431015 Michael Snyder, Stanford 17e6d47cc4a1d0823b40031289bf2359 https://www.encodeproject.org/files/ENCFF230EHZ/@@download/ENCFF230EHZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/19/0955dfa5-adb4-4cac-84f7-9f21ec26c66d/ENCFF230EHZ.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF315PEI fastq fastq reads ENCSR715EHB Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1731'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5915/'], '@type': ['Target', 'Item'], 'name': 'RARB-human', 'label': 'RARB', '@id': '/targets/RARB-human/', 'title': 'RARB (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f98996f4-bbf7-4c11-93a1-5df8ba198cc4', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 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mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF299UIO/ 316460940 ENCODE Processing Pipeline d1f103aba588cd77c912241a0cb15659 https://www.encodeproject.org/files/ENCFF163VRH/@@download/ENCFF163VRH.bam released s3://encode-public/2017/11/09/178bf6de-097e-4def-94dc-d093b5e8c21f/ENCFF163VRH.bam ENCODE3 GRCh38 archived low read depth ENCFF904HSX bam bam redacted alignments hg19 ENCSR837ART Control ChIP-seq /human-donors/ENCDO250QGI/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF299UIO/ 201856138 ENCODE Processing Pipeline 1a3f692cbc181f7bab0d06a396174198 https://www.encodeproject.org/files/ENCFF904HSX/@@download/ENCFF904HSX.bam released s3://encode-public/2018/01/20/38c7c5ac-7fff-42b2-a992-51d80fcd07c7/ENCFF904HSX.bam ENCODE3 hg19 archived low read depth ENCFF271ZAT bam bam redacted unfiltered alignments hg19 ENCSR837ART Control ChIP-seq /human-donors/ENCDO250QGI/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF299UIO/ 307807559 ENCODE Processing Pipeline 7715b40a171d07dd61ecafa60595b078 https://www.encodeproject.org/files/ENCFF271ZAT/@@download/ENCFF271ZAT.bam released s3://encode-public/2018/01/20/c3fe40c7-5fe7-4281-b505-82e01c20d90e/ENCFF271ZAT.bam ENCODE3 hg19 archived low read depth ENCFF513EFO bam bam redacted alignments GRCh38 ENCSR837ART Control ChIP-seq /human-donors/ENCDO250QGI/ CL:2000001 peripheral blood mononuclear cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF722RZR/, /files/ENCFF110MCL/ 1199259226 ENCODE Processing Pipeline 394fb1c32a1df56a828341db8108abde https://www.encodeproject.org/files/ENCFF513EFO/@@download/ENCFF513EFO.bam released s3://encode-public/2021/01/28/133e9c05-3c6c-450d-984e-9a05f2a32fe1/ENCFF513EFO.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF098GCO fastq fastq reads ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 91413484 Michael Snyder, Stanford 82a1e38934a555710581a9f55b500aa6 https://www.encodeproject.org/files/ENCFF098GCO/@@download/ENCFF098GCO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/a0567724-4f2f-417c-a95c-18f5a3c4b271/ENCFF098GCO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF068HKM fastq fastq reads ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 115921572 Michael Snyder, Stanford 15afd0e44cd1da5fe62ffca56829c96e https://www.encodeproject.org/files/ENCFF068HKM/@@download/ENCFF068HKM.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/bf9a4ccc-ffd1-4574-9b59-4c8cf173bcf9/ENCFF068HKM.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF455QVG bigWig bigWig signal of unique reads ce10 ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF673XJG/ 10030205 Kevin White, UChicago 10a7eb3b01671fab8a7f906de43cf9b3 https://www.encodeproject.org/files/ENCFF455QVG/@@download/ENCFF455QVG.bigWig released s3://encode-public/2017/04/29/5e366aef-269b-45c6-9c73-5df64b070654/ENCFF455QVG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF651KVR bigWig bigWig read-depth normalized signal ce10 ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF673XJG/ 10029889 Kevin White, UChicago 162237d9523be02b5d819b2a3f76ec93 https://www.encodeproject.org/files/ENCFF651KVR/@@download/ENCFF651KVR.bigWig released s3://encode-public/2017/04/29/5fdd5a67-5315-45f8-843b-60a3ac9b135a/ENCFF651KVR.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF673XJG bam bam alignments ce10 ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF098GCO/, /files/ENCFF068HKM/, /files/ENCFF987UMF/ 270419417 Kevin White, UChicago 3c510d3d5a9bdf75d9001e82dc68e651 https://www.encodeproject.org/files/ENCFF673XJG/@@download/ENCFF673XJG.bam released s3://encode-public/2018/01/05/05d4d1c8-3937-408b-8bd9-d6f68f54f47d/ENCFF673XJG.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF583IQZ bam bam alignments ce11 ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF098GCO/, /files/ENCFF068HKM/, /files/ENCFF586MOL/ 270702555 Kevin White, UChicago 8810969c278e9af0ff8d6b19026e6041 https://www.encodeproject.org/files/ENCFF583IQZ/@@download/ENCFF583IQZ.bam released s3://encode-public/2018/01/05/4c2a1d86-fc81-4894-bad5-ba66d927827f/ENCFF583IQZ.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF181OTW bigWig bigWig read-depth normalized signal ce11 ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF583IQZ/ 10027289 Kevin White, UChicago 370d204ddeea0f9e07e54f8479cde5f1 https://www.encodeproject.org/files/ENCFF181OTW/@@download/ENCFF181OTW.bigWig released s3://encode-public/2018/01/22/29c10a25-1a5e-4ccf-ab85-9349094f6691/ENCFF181OTW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF501OUG bigWig bigWig signal of unique reads ce11 ENCSR544TSB Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF583IQZ/ 10025392 Kevin White, UChicago 68c2431bbfe4c434f6c3131a59d5b7a0 https://www.encodeproject.org/files/ENCFF501OUG/@@download/ENCFF501OUG.bigWig released s3://encode-public/2018/01/22/fb45a979-a742-4f0e-8481-b211de0e6f36/ENCFF501OUG.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF488OXB fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 398715487 Bradley Bernstein, Broad 22b8f54d310dc0898aca3649045b8302 SRA:SRR14103020 https://www.encodeproject.org/files/ENCFF488OXB/@@download/ENCFF488OXB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b3a0957c-0380-4c3e-a6ae-a86aedbaf127/ENCFF488OXB.fastq.gz ENCFF832WAL fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 395766479 Bradley Bernstein, Broad e678ce357dae6ec3dfd47178e807b724 SRA:SRR14103021 https://www.encodeproject.org/files/ENCFF832WAL/@@download/ENCFF832WAL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/807b7152-94e8-4aec-a95d-8393e627ee07/ENCFF832WAL.fastq.gz ENCFF938JAH fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 391209971 Bradley Bernstein, Broad b6b654349692705b1e43ff1b07d509b9 SRA:SRR14103024 https://www.encodeproject.org/files/ENCFF938JAH/@@download/ENCFF938JAH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/416e8810-eb71-4763-bc50-757678c95232/ENCFF938JAH.fastq.gz ENCFF537GQL fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 395275283 Bradley Bernstein, Broad 7a748f51a1f956dadd2632ac18d396bd SRA:SRR14103025 https://www.encodeproject.org/files/ENCFF537GQL/@@download/ENCFF537GQL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/f5009007-5dbe-48e0-be25-fc9310c6d34b/ENCFF537GQL.fastq.gz ENCFF402KRD fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 408002457 Bradley Bernstein, Broad b2283b9a07f3f01414ef471f519238e0 SRA:SRR14103022 https://www.encodeproject.org/files/ENCFF402KRD/@@download/ENCFF402KRD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/0164f967-f970-4cac-b86d-2efafc677d2b/ENCFF402KRD.fastq.gz ENCFF003INW fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 396557876 Bradley Bernstein, Broad 750b2a6e45383036f3ba19617fdc0f4b SRA:SRR14103026 https://www.encodeproject.org/files/ENCFF003INW/@@download/ENCFF003INW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/c975e51e-bea0-4c92-a056-82c312331865/ENCFF003INW.fastq.gz ENCFF873OXL fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 395584846 Bradley Bernstein, Broad b5393c65b05aed5a62fb762efda18fe8 SRA:SRR14103027 https://www.encodeproject.org/files/ENCFF873OXL/@@download/ENCFF873OXL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/b7cc42ec-e612-4a59-aaaf-e207396dce54/ENCFF873OXL.fastq.gz ENCFF333ECE fastq fastq reads ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 401319774 Bradley Bernstein, Broad 18a4ca1a401a4df180da6a9d3df0a6fb SRA:SRR14103023 https://www.encodeproject.org/files/ENCFF333ECE/@@download/ENCFF333ECE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/591a58a2-4157-473f-9956-ea36179e934f/ENCFF333ECE.fastq.gz ENCFF868OTE bam bam unfiltered alignments GRCh38 ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF333ECE/, /files/ENCFF402KRD/, /files/ENCFF537GQL/, /files/ENCFF003INW/, /files/ENCFF873OXL/, /files/ENCFF938JAH/, /files/ENCFF110MCL/, /files/ENCFF488OXB/, /files/ENCFF832WAL/ 3174453581 ENCODE Processing Pipeline c2698e23aa273876b02b78ed70b8cadc https://www.encodeproject.org/files/ENCFF868OTE/@@download/ENCFF868OTE.bam released s3://encode-public/2020/06/14/b3bd0020-5c53-476d-bff9-186ba7390c48/ENCFF868OTE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF715EXU bam bam alignments GRCh38 ENCSR008HBN Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF333ECE/, /files/ENCFF402KRD/, /files/ENCFF537GQL/, /files/ENCFF003INW/, /files/ENCFF873OXL/, /files/ENCFF938JAH/, /files/ENCFF110MCL/, /files/ENCFF488OXB/, /files/ENCFF832WAL/ 2723896901 ENCODE Processing Pipeline ee58bf982e9122ba946c1b1ea2552663 https://www.encodeproject.org/files/ENCFF715EXU/@@download/ENCFF715EXU.bam released s3://encode-public/2020/06/14/24e56021-6307-4d61-978c-7698dec2e5f6/ENCFF715EXU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF683NTX tagAlign tagAlign alignments hg19 ENCSR562HZE Control ChIP-seq UBERON:0002686 angular gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 204252813 Anshul Kundaje, Stanford 0a41b1e979d6ef74357d1febd2dff271 https://www.encodeproject.org/files/ENCFF683NTX/@@download/ENCFF683NTX.tagAlign.gz archived s3://encode-public/2016/02/11/62b08772-7236-47c4-a5fd-e040cd2e1469/ENCFF683NTX.tagAlign.gz Lab custom hg19 archived low read length ENCFF568WFK bam bam redacted unfiltered alignments GRCh38 ENCSR562HZE Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002686 angular gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2, 1_3 36 /files/ENCFF282OBH/, /files/ENCFF435NXM/, /files/ENCFF643CGH/, /files/ENCFF866OVM/, /files/ENCFF392NMZ/, /files/ENCFF657UJU/, /files/ENCFF162VCK/ 427833923 ENCODE Processing Pipeline 3e121d87d203585c63a3dec771793955 https://www.encodeproject.org/files/ENCFF568WFK/@@download/ENCFF568WFK.bam released s3://encode-public/2017/10/16/361231af-3604-4454-921f-32325f78da50/ENCFF568WFK.bam ENCODE3 GRCh38 archived low read length ENCFF854FFH bam bam redacted alignments GRCh38 ENCSR562HZE Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002686 angular gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2, 1_3 36 /files/ENCFF282OBH/, /files/ENCFF435NXM/, /files/ENCFF643CGH/, /files/ENCFF866OVM/, /files/ENCFF392NMZ/, /files/ENCFF657UJU/, /files/ENCFF162VCK/ 235605985 ENCODE Processing Pipeline 972d0e13d9522ea1f3117c2b03491593 https://www.encodeproject.org/files/ENCFF854FFH/@@download/ENCFF854FFH.bam released s3://encode-public/2017/10/16/f1fac282-a2c7-474a-b92d-e34921d6d77c/ENCFF854FFH.bam ENCODE3 GRCh38 archived low read length ENCFF983EZW bam bam redacted unfiltered alignments hg19 ENCSR562HZE Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002686 angular gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2, 1_3 36 /files/ENCFF282OBH/, /files/ENCFF807MUK/, /files/ENCFF435NXM/, /files/ENCFF866OVM/, /files/ENCFF392NMZ/, /files/ENCFF657UJU/, /files/ENCFF162VCK/ 302939134 ENCODE Processing Pipeline f53939229daa18b13f84d96942a03288 https://www.encodeproject.org/files/ENCFF983EZW/@@download/ENCFF983EZW.bam released s3://encode-public/2018/01/20/c588b6c7-6314-4e38-8a4c-ff02cfa16e12/ENCFF983EZW.bam ENCODE3 hg19 archived low read length ENCFF436CSX bam bam redacted alignments hg19 ENCSR562HZE Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002686 angular gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2, 1_3 36 /files/ENCFF282OBH/, /files/ENCFF807MUK/, /files/ENCFF435NXM/, /files/ENCFF866OVM/, /files/ENCFF392NMZ/, /files/ENCFF657UJU/, /files/ENCFF162VCK/ 205040372 ENCODE Processing Pipeline 02ac08b17820791e52bb468daf863d7b https://www.encodeproject.org/files/ENCFF436CSX/@@download/ENCFF436CSX.bam released s3://encode-public/2018/01/20/bb6d5f35-5957-44bb-a5c0-c1d0bc7da0cc/ENCFF436CSX.bam ENCODE3 hg19 archived low read length ENCFF053HBI bam bam redacted alignments GRCh38 ENCSR562HZE Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002686 angular gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2, 1_3 36 /files/ENCFF701XBA/, /files/ENCFF803EOZ/, /files/ENCFF773RKQ/, /files/ENCFF110MCL/, /files/ENCFF968SXY/, /files/ENCFF650ULF/, /files/ENCFF724QOO/ 1228804001 ENCODE Processing Pipeline 24f757a276868fcced05d38a8745a690 https://www.encodeproject.org/files/ENCFF053HBI/@@download/ENCFF053HBI.bam released s3://encode-public/2021/01/28/bf173aed-f6eb-4202-afb3-78c638b7f796/ENCFF053HBI.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF628SPD fastq fastq reads ENCSR056IHU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 73164506 Michael Snyder, Stanford b978570e3b8573448f69a8d1edb742b3 https://www.encodeproject.org/files/ENCFF628SPD/@@download/ENCFF628SPD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/c800611c-f526-4034-b3b5-337cf14fc236/ENCFF628SPD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF515ACF fastq fastq reads ENCSR056IHU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 80720297 Michael Snyder, Stanford 56df7a5cae4635587762912fa8e744de https://www.encodeproject.org/files/ENCFF515ACF/@@download/ENCFF515ACF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/9600570b-cdeb-4911-8c7d-8081a6441fff/ENCFF515ACF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF810ZYV bigWig bigWig read-depth normalized signal ce10 ENCSR056IHU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF494KMP/ 10038268 Kevin White, UChicago bc0ef6bc7098e99cef0b05393663304a https://www.encodeproject.org/files/ENCFF810ZYV/@@download/ENCFF810ZYV.bigWig released s3://encode-public/2017/04/29/6fca9ed7-d8a7-447e-8a58-da4b4b232d80/ENCFF810ZYV.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF145CUZ bigWig bigWig signal of unique reads ce10 ENCSR056IHU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF494KMP/ 10004862 Kevin White, UChicago 34ce2104751e6566efe86157fabb711b https://www.encodeproject.org/files/ENCFF145CUZ/@@download/ENCFF145CUZ.bigWig released s3://encode-public/2017/04/29/032bb23e-79fc-4e63-b6bf-42a2f29177b8/ENCFF145CUZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF267KIW bam bam alignments ce11 ENCSR056IHU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF515ACF/, /files/ENCFF628SPD/, /files/ENCFF586MOL/ 219064176 Kevin White, UChicago 33c9b8721cb9cb27bcd41f015de1a788 https://www.encodeproject.org/files/ENCFF267KIW/@@download/ENCFF267KIW.bam released s3://encode-public/2018/01/05/60c57f5a-c101-43e3-ba44-2676a4160ab2/ENCFF267KIW.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF494KMP bam bam alignments ce10 ENCSR056IHU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF515ACF/, /files/ENCFF628SPD/, /files/ENCFF987UMF/ 218853248 Kevin White, UChicago dca303715a6953437146dc9a982e7fe4 https://www.encodeproject.org/files/ENCFF494KMP/@@download/ENCFF494KMP.bam released s3://encode-public/2018/01/05/cb482d49-4abd-4494-af90-b8485eccf8b4/ENCFF494KMP.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF281LBV bigWig bigWig read-depth normalized signal ce11 ENCSR056IHU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF267KIW/ 9976828 Kevin White, UChicago e8ac4a2912bc4e131787b691a146750a https://www.encodeproject.org/files/ENCFF281LBV/@@download/ENCFF281LBV.bigWig released s3://encode-public/2018/01/22/5875a460-3568-4c88-9cab-48e10c98dfd5/ENCFF281LBV.bigWig Lab custom ce11 released missing genetic modification characterization, missing 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https://www.encodeproject.org/files/ENCFF385VQR/@@download/ENCFF385VQR.bigWig released s3://encode-public/2018/01/22/dd33efcd-4003-47e8-bd63-1f4a75560421/ENCFF385VQR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF060OKH fastq fastq reads ENCSR403VPZ Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 336842652 Bradley Bernstein, Broad 6bacde84920a79ca1bc22bba29dec68f SRA:SRR13804471 https://www.encodeproject.org/files/ENCFF060OKH/@@download/ENCFF060OKH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6c44fe3e-ab4b-42c4-b000-65d9e3c89c1d/ENCFF060OKH.fastq.gz ENCFF775SIG fastq fastq reads ENCSR403VPZ Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 343845067 Bradley Bernstein, Broad 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https://www.encodeproject.org/files/ENCFF202WYX/@@download/ENCFF202WYX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e234ac7e-d00e-4128-9031-8c0dcfacf678/ENCFF202WYX.fastq.gz ENCFF177TXP bam bam unfiltered alignments GRCh38 ENCSR403VPZ Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF775SIG/, /files/ENCFF110MCL/, /files/ENCFF060OKH/, /files/ENCFF063GPC/, /files/ENCFF651SKW/, /files/ENCFF524MDI/, /files/ENCFF331HGE/, /files/ENCFF202WYX/, /files/ENCFF030OGP/ 2704899162 ENCODE Processing Pipeline 03553db293d176519985742e32e2106f https://www.encodeproject.org/files/ENCFF177TXP/@@download/ENCFF177TXP.bam released s3://encode-public/2020/06/14/70791d9a-3472-4f33-b403-451e56161597/ENCFF177TXP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF796NPP bam bam alignments GRCh38 ENCSR403VPZ Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002084 heart left ventricle tissue 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https://www.encodeproject.org/files/ENCFF073YUZ/@@download/ENCFF073YUZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a72de657-a6e0-46c4-8f27-fb6f48cfddc0/ENCFF073YUZ.fastq.gz ENCFF772SSJ fastq fastq reads ENCSR292BUB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 639587357 Bradley Bernstein, Broad 6ca5a613bf7719c5c6adf2ea2e05d812 SRA:SRR14104262 https://www.encodeproject.org/files/ENCFF772SSJ/@@download/ENCFF772SSJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7fb1bf3f-95ed-435f-8859-c07f4e52f0cd/ENCFF772SSJ.fastq.gz ENCFF240GZJ fastq fastq reads ENCSR292BUB Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 447268021 Bradley Bernstein, Broad ddef009d11e538f505f00813da8fb9b9 SRA:SRR14104259 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Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF039FEA/ 231927007 ENCODE Processing Pipeline 46411fc14e258df9ab6738918b13eaae https://www.encodeproject.org/files/ENCFF725GON/@@download/ENCFF725GON.bam released s3://encode-public/2017/11/09/47bc1313-088f-4437-a156-2a12e8ecb810/ENCFF725GON.bam ENCODE3 GRCh38 archived ENCFF902WNG bam bam redacted unfiltered alignments hg19 ENCSR420XKX Control ChIP-seq /human-donors/ENCDO047TBB/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF039FEA/ 296025948 ENCODE Processing Pipeline f00281e1b8e114103fc626cbc380b2b7 https://www.encodeproject.org/files/ENCFF902WNG/@@download/ENCFF902WNG.bam released s3://encode-public/2018/01/20/52934903-6392-4bec-9205-be3e2be28b28/ENCFF902WNG.bam ENCODE3 hg19 archived ENCFF570ZPO bam bam redacted alignments hg19 ENCSR420XKX Control ChIP-seq /human-donors/ENCDO047TBB/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF039FEA/ 231557644 ENCODE Processing Pipeline 9cca7f591eaaac082af398c2e7214d17 https://www.encodeproject.org/files/ENCFF570ZPO/@@download/ENCFF570ZPO.bam released s3://encode-public/2018/01/20/522beba8-ae68-4112-9c54-5ee2e9a6b248/ENCFF570ZPO.bam ENCODE3 hg19 archived ENCFF466UQD bam bam redacted alignments GRCh38 ENCSR420XKX Control ChIP-seq /human-donors/ENCDO047TBB/ CL:2000045 foreskin melanocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF472WEF/ 1398528435 ENCODE Processing Pipeline 378f933d7de8749c2845e7b8942c98c3 https://www.encodeproject.org/files/ENCFF466UQD/@@download/ENCFF466UQD.bam released s3://encode-public/2021/01/28/8e397e44-9f6a-4a41-b23f-8641956c5970/ENCFF466UQD.bam ENCODE4 v1.7.0 GRCh38 released ENCFF584NRD tagAlign tagAlign alignments hg19 ENCSR161JTT Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 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2462973427 ENCODE Processing Pipeline b0fb04a5f1b54c7ce53dc97f71f58beb https://www.encodeproject.org/files/ENCFF993WKZ/@@download/ENCFF993WKZ.bam released s3://encode-public/2016/12/19/ec9bb3b2-2287-45d5-8e97-1cc1c783320f/ENCFF993WKZ.bam ENCODE3 hg19 archived low read length ENCFF982MCJ bam bam alignments hg19 ENCSR161JTT Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF342BNF/, /files/ENCFF807MUK/ 1467877146 ENCODE Processing Pipeline cbb34b7de497cde2eb78b3789dc8cabd https://www.encodeproject.org/files/ENCFF982MCJ/@@download/ENCFF982MCJ.bam released s3://encode-public/2016/12/19/93b68eeb-1a68-41ee-9c50-bc8a7c562b07/ENCFF982MCJ.bam ENCODE3 hg19 archived low read length ENCFF437LCH bam bam unfiltered alignments GRCh38 ENCSR161JTT Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF342BNF/, /files/ENCFF643CGH/ 2480524255 ENCODE Processing Pipeline 52677b2e8f94dd2591b870a9693f7603 https://www.encodeproject.org/files/ENCFF437LCH/@@download/ENCFF437LCH.bam released s3://encode-public/2016/12/19/2f35469b-38dc-4635-a34b-20241c8bc455/ENCFF437LCH.bam ENCODE3 GRCh38 archived low read length ENCFF611WYN bam bam alignments GRCh38 ENCSR161JTT Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF342BNF/, /files/ENCFF643CGH/ 1467572478 ENCODE Processing Pipeline 333a21c63ca40e9d6ef5b9035da1aaca https://www.encodeproject.org/files/ENCFF611WYN/@@download/ENCFF611WYN.bam released s3://encode-public/2016/12/19/77ac48e5-6865-4534-b3ec-e056ccee7405/ENCFF611WYN.bam ENCODE3 GRCh38 archived low read length ENCFF692VBD tagAlign tagAlign alignments hg19 ENCSR161JTT Control ChIP-seq UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 202561157 Anshul Kundaje, Stanford a93620b22fa3ddc440056c933f98c374 https://www.encodeproject.org/files/ENCFF692VBD/@@download/ENCFF692VBD.tagAlign.gz archived s3://encode-public/2016/02/11/5394e11b-22af-47df-a4db-402171663e7c/ENCFF692VBD.tagAlign.gz Lab custom hg19 archived low read length ENCFF510NUC bam bam unfiltered alignments GRCh38 ENCSR161JTT Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF342BNF/, /files/ENCFF110MCL/ 2414039709 ENCODE Processing Pipeline c0a73b73ba0d64997c99419ec70a2c7d https://www.encodeproject.org/files/ENCFF510NUC/@@download/ENCFF510NUC.bam released s3://encode-public/2020/10/08/335efc89-6282-4c4b-b869-fbee47d3ea16/ENCFF510NUC.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF478IGK bam bam alignments GRCh38 ENCSR161JTT Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF342BNF/, /files/ENCFF110MCL/ 1620191747 ENCODE Processing Pipeline 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https://www.encodeproject.org/files/ENCFF289XEV/@@download/ENCFF289XEV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/019b2aed-ffca-4bc3-bf1e-36d1aa0c0fea/ENCFF289XEV.fastq.gz ENCFF468EAQ fastq fastq reads ENCSR519UXW Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 326935073 Bradley Bernstein, Broad 4ae1ab07af51825e85dc4ddc36c07ec9 SRA:SRR13803964 https://www.encodeproject.org/files/ENCFF468EAQ/@@download/ENCFF468EAQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e92508ee-20c1-44c9-80d7-5714d9f429e1/ENCFF468EAQ.fastq.gz ENCFF246CZF fastq fastq reads ENCSR519UXW Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 308111201 Bradley Bernstein, Broad 515f83e18250672cb4f64972c8dd0ebb SRA:SRR13803968 https://www.encodeproject.org/files/ENCFF246CZF/@@download/ENCFF246CZF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/f706e6d1-3947-454e-94ad-9b48cc0a4366/ENCFF246CZF.fastq.gz ENCFF893NND fastq fastq reads ENCSR519UXW Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 302434818 Bradley Bernstein, Broad 0a34429312a3a23e1da7ee8edfb69d0d SRA:SRR13803969 https://www.encodeproject.org/files/ENCFF893NND/@@download/ENCFF893NND.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ca553985-710d-4751-adc6-65fbd7d0332d/ENCFF893NND.fastq.gz ENCFF347FVR fastq fastq reads ENCSR519UXW Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 327653041 Bradley Bernstein, Broad a2cd0a0b7a8c2ade255f75f564e7c8a0 SRA:SRR13803965 https://www.encodeproject.org/files/ENCFF347FVR/@@download/ENCFF347FVR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a1c5e9b8-83f4-4d5c-ba75-64efabe87b84/ENCFF347FVR.fastq.gz ENCFF193CSY bam bam alignments GRCh38 ENCSR519UXW Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF037PTH/, /files/ENCFF347FVR/, /files/ENCFF851BNC/, /files/ENCFF893NND/, /files/ENCFF246CZF/, /files/ENCFF117UVJ/, /files/ENCFF110MCL/, /files/ENCFF468EAQ/, /files/ENCFF289XEV/ 2088105977 ENCODE Processing Pipeline 2d746c8ce5a7cf167ce476ae96dcabbf https://www.encodeproject.org/files/ENCFF193CSY/@@download/ENCFF193CSY.bam released s3://encode-public/2020/06/14/3e0c7d8e-5e28-4d66-a679-0ae439f68df5/ENCFF193CSY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF171ZRV bam bam unfiltered alignments GRCh38 ENCSR519UXW Control ChIP-seq /human-donors/ENCDO411EVD/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF037PTH/, /files/ENCFF347FVR/, /files/ENCFF851BNC/, /files/ENCFF893NND/, /files/ENCFF246CZF/, /files/ENCFF117UVJ/, /files/ENCFF110MCL/, /files/ENCFF468EAQ/, /files/ENCFF289XEV/ 2505406702 ENCODE Processing Pipeline 2d41c3cb416a9d03b04eb1e6c7646115 https://www.encodeproject.org/files/ENCFF171ZRV/@@download/ENCFF171ZRV.bam released s3://encode-public/2020/06/14/58b16e41-8839-4624-9391-6f7883dcab92/ENCFF171ZRV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF921MXL fastq fastq reads ENCSR067VBO Control ChIP-seq /worm-donors/ENCDO067ZQI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], 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'6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], '@type': ['Target', 'Item'], 'name': 'crh-2-celegans', 'label': 'crh-2', '@id': '/targets/crh-2-celegans/', 'title': 'crh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2c148674-667a-4c99-942f-8a39255a347a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 84411643 Michael Snyder, Stanford 1be11f0d0cfea287c44af4c97f61fff4 https://www.encodeproject.org/files/ENCFF348EJB/@@download/ENCFF348EJB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/5d165750-4370-47a1-8ce3-bc23b20c5fb9/ENCFF348EJB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF721IJT bam bam alignments ce10 ENCSR067VBO Control ChIP-seq /worm-donors/ENCDO067ZQI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], '@type': ['Target', 'Item'], 'name': 'crh-2-celegans', 'label': 'crh-2', '@id': '/targets/crh-2-celegans/', 'title': 'crh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2c148674-667a-4c99-942f-8a39255a347a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF348EJB/, /files/ENCFF921MXL/, /files/ENCFF987UMF/ 238571239 Kevin White, UChicago f071dd9616bcbde3d43408e395aa8cbb https://www.encodeproject.org/files/ENCFF721IJT/@@download/ENCFF721IJT.bam released s3://encode-public/2017/04/27/58122b99-c934-4018-a258-b0873c3619e1/ENCFF721IJT.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF117LBE bam bam alignments ce11 ENCSR067VBO Control ChIP-seq /worm-donors/ENCDO067ZQI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], '@type': ['Target', 'Item'], 'name': 'crh-2-celegans', 'label': 'crh-2', '@id': '/targets/crh-2-celegans/', 'title': 'crh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2c148674-667a-4c99-942f-8a39255a347a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF348EJB/, /files/ENCFF921MXL/, /files/ENCFF586MOL/ 238820322 Kevin White, UChicago 718b3379f0e37c2f9c980ec2fe5aecf9 https://www.encodeproject.org/files/ENCFF117LBE/@@download/ENCFF117LBE.bam released s3://encode-public/2017/04/27/4ab9d195-cae8-4f14-874f-997e2e6122fe/ENCFF117LBE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF703VNO bigWig bigWig signal of unique reads ce10 ENCSR067VBO Control ChIP-seq /worm-donors/ENCDO067ZQI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], '@type': ['Target', 'Item'], 'name': 'crh-2-celegans', 'label': 'crh-2', '@id': '/targets/crh-2-celegans/', 'title': 'crh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2c148674-667a-4c99-942f-8a39255a347a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF721IJT/ 10042535 Kevin White, UChicago 3f6c7f8ade567a8a83033712e67e1bbc https://www.encodeproject.org/files/ENCFF703VNO/@@download/ENCFF703VNO.bigWig released s3://encode-public/2017/04/29/33943ba0-72e1-4773-80de-829b4327f686/ENCFF703VNO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF429ZKM bigWig bigWig read-depth normalized signal ce10 ENCSR067VBO Control ChIP-seq /worm-donors/ENCDO067ZQI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], '@type': ['Target', 'Item'], 'name': 'crh-2-celegans', 'label': 'crh-2', '@id': '/targets/crh-2-celegans/', 'title': 'crh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2c148674-667a-4c99-942f-8a39255a347a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF721IJT/ 10067343 Kevin White, UChicago 5cdc31f5f71597fc9358c0f5fb4f7970 https://www.encodeproject.org/files/ENCFF429ZKM/@@download/ENCFF429ZKM.bigWig released s3://encode-public/2017/04/29/8e587966-9795-42a4-927c-76d4d439530d/ENCFF429ZKM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF699JUR bigWig bigWig read-depth normalized signal ce11 ENCSR067VBO Control ChIP-seq /worm-donors/ENCDO067ZQI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], '@type': ['Target', 'Item'], 'name': 'crh-2-celegans', 'label': 'crh-2', '@id': '/targets/crh-2-celegans/', 'title': 'crh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2c148674-667a-4c99-942f-8a39255a347a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF117LBE/ 10060041 Kevin White, UChicago 0de3b835e8078e71155ac3d1deddc5a1 https://www.encodeproject.org/files/ENCFF699JUR/@@download/ENCFF699JUR.bigWig released s3://encode-public/2017/04/29/1213e87b-4230-44e2-9052-5659d8a3ca26/ENCFF699JUR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF253XOA bigWig bigWig signal of unique reads ce11 ENCSR067VBO Control ChIP-seq /worm-donors/ENCDO067ZQI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/259434/'], '@type': ['Target', 'Item'], 'name': 'crh-2-celegans', 'label': 'crh-2', '@id': '/targets/crh-2-celegans/', 'title': 'crh-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '2c148674-667a-4c99-942f-8a39255a347a', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF117LBE/ 10038534 Kevin White, UChicago 738048515374f01869e1045265d8cb41 https://www.encodeproject.org/files/ENCFF253XOA/@@download/ENCFF253XOA.bigWig released s3://encode-public/2017/04/29/485f550d-6161-437a-8817-aa9ded6afa32/ENCFF253XOA.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF066YWP tagAlign tagAlign alignments hg19 ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF679UAT/ 279284738 Anshul Kundaje, Stanford c6b8bc5bf3a290eaf6397cfff973d6d4 https://www.encodeproject.org/files/ENCFF066YWP/@@download/ENCFF066YWP.tagAlign.gz archived s3://encode-public/2016/03/30/aa84b7bd-5262-4aeb-b0ea-ec457c558de0/ENCFF066YWP.tagAlign.gz Lab custom hg19 archived low read length ENCFF679UAT fastq fastq reads ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 2288372318 Zhiping Weng, UMass 137e3552b56b9af1f249b33fa146939b SRA:SRR520469 https://www.encodeproject.org/files/ENCFF679UAT/@@download/ENCFF679UAT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/8a924230-a521-4264-8e3c-5fe31b8c2856/ENCFF679UAT.fastq.gz low read length ENCFF462HQV bam bam unfiltered alignments hg19 ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF679UAT/ 2790667339 ENCODE Processing Pipeline 472900ac6b1cb658a112dd29eb7a6a6e https://www.encodeproject.org/files/ENCFF462HQV/@@download/ENCFF462HQV.bam released s3://encode-public/2016/12/19/4e4e409e-ce1e-4bc8-98c2-ec0658715e9b/ENCFF462HQV.bam ENCODE3 hg19 archived low read length ENCFF758YZM bam bam unfiltered alignments GRCh38 ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF679UAT/ 2806896386 ENCODE Processing Pipeline 476ef3eeadd0ee9bff3f5ee021c61cda https://www.encodeproject.org/files/ENCFF758YZM/@@download/ENCFF758YZM.bam released s3://encode-public/2016/12/19/e89f0de9-37cc-4344-80fa-bb65e503c7da/ENCFF758YZM.bam ENCODE3 GRCh38 archived low read length ENCFF026ECJ bam bam alignments hg19 ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF679UAT/ 1789748304 ENCODE Processing Pipeline a6bf5efbc5f20051e71ed37a4bdf659c https://www.encodeproject.org/files/ENCFF026ECJ/@@download/ENCFF026ECJ.bam released s3://encode-public/2016/12/19/c58d6a69-807f-46dc-bea0-5a8afaa9435c/ENCFF026ECJ.bam ENCODE3 hg19 archived low read length ENCFF249ZNY bam bam alignments GRCh38 ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF679UAT/ 1789362173 ENCODE Processing Pipeline ff621b17e467e8342a47873c2a94d85b https://www.encodeproject.org/files/ENCFF249ZNY/@@download/ENCFF249ZNY.bam released s3://encode-public/2016/12/19/fd4b5ef2-5455-4625-bcc9-ea9debcd0660/ENCFF249ZNY.bam ENCODE3 GRCh38 archived low read length ENCFF647JQN bam bam unfiltered alignments GRCh38 ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF679UAT/ 2744971148 ENCODE Processing Pipeline d4755cb3e14feb91eabadb6974e1c425 https://www.encodeproject.org/files/ENCFF647JQN/@@download/ENCFF647JQN.bam released s3://encode-public/2020/11/13/4d58b9d6-b518-4946-94bb-4f926261fec3/ENCFF647JQN.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF830BDU bam bam alignments GRCh38 ENCSR366WUE Control ChIP-seq /human-donors/ENCDO000AAX/ EFO:0001196 IMR-90 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF679UAT/ 1943810346 ENCODE Processing Pipeline 254560416a08a0b7434f3b4f179fd40e https://www.encodeproject.org/files/ENCFF830BDU/@@download/ENCFF830BDU.bam released s3://encode-public/2020/11/13/bdca7441-786a-42e2-993c-5d70d32cf4e9/ENCFF830BDU.bam ENCODE4 v1.6.1 GRCh38 released low read length ENCFF667PLT fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 330119376 Bradley Bernstein, Broad b7758693fc5ecb5ed6d69853b8bfb559 SRA:SRR14107428 https://www.encodeproject.org/files/ENCFF667PLT/@@download/ENCFF667PLT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7ad9db17-e17e-40b8-a883-0a95a4ed3f41/ENCFF667PLT.fastq.gz ENCFF494NHX fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 402120370 Bradley Bernstein, Broad 8efb90678535f79d56fda2ebcc99c949 SRA:SRR14107424 https://www.encodeproject.org/files/ENCFF494NHX/@@download/ENCFF494NHX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/25f006a7-e13f-442c-9222-0619827367f1/ENCFF494NHX.fastq.gz ENCFF607DUO fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 324707119 Bradley Bernstein, Broad 021c7ac51f8cd351572ff42f7bd8975d SRA:SRR14107429 https://www.encodeproject.org/files/ENCFF607DUO/@@download/ENCFF607DUO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/213fc64a-5bed-4bc7-ae9c-150163eafcf1/ENCFF607DUO.fastq.gz ENCFF860RSV fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 404271239 Bradley Bernstein, Broad 7c362031e322d748386d039a872acdfd SRA:SRR14107425 https://www.encodeproject.org/files/ENCFF860RSV/@@download/ENCFF860RSV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4e298fb4-8548-4145-8efc-555ecb7ac1d5/ENCFF860RSV.fastq.gz ENCFF644HZD fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 398459883 Bradley Bernstein, Broad df6bec09b346122b581c37c0dff70504 SRA:SRR14107426 https://www.encodeproject.org/files/ENCFF644HZD/@@download/ENCFF644HZD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8db99dd7-24b2-484b-907a-6f6e664bac93/ENCFF644HZD.fastq.gz ENCFF770HZS fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 322478337 Bradley Bernstein, Broad 24393498788f85f9c0f41bad1107f61a SRA:SRR14107430 https://www.encodeproject.org/files/ENCFF770HZS/@@download/ENCFF770HZS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/f6842900-f522-440c-88d3-5862719cff3f/ENCFF770HZS.fastq.gz ENCFF747VLC fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 401833639 Bradley Bernstein, Broad db45555dadbc13fb6403a34483c70a40 SRA:SRR14107427 https://www.encodeproject.org/files/ENCFF747VLC/@@download/ENCFF747VLC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/26bca6a8-95ab-40da-abb9-ffa724bf0585/ENCFF747VLC.fastq.gz ENCFF557NOV fastq fastq reads ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 320211242 Bradley Bernstein, Broad 0cb5fca180d0ed72c6b658d6dc011a30 SRA:SRR14107431 https://www.encodeproject.org/files/ENCFF557NOV/@@download/ENCFF557NOV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/0e5e06de-cd61-4d57-ad83-c07ce7cfeb66/ENCFF557NOV.fastq.gz ENCFF754GWG bam bam unfiltered alignments GRCh38 ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF607DUO/, /files/ENCFF860RSV/, /files/ENCFF557NOV/, /files/ENCFF110MCL/, /files/ENCFF770HZS/, /files/ENCFF667PLT/, /files/ENCFF644HZD/, /files/ENCFF494NHX/, /files/ENCFF747VLC/ 2923640370 ENCODE Processing Pipeline 9c6cd731c5835f15d4cf297c246f5c3b https://www.encodeproject.org/files/ENCFF754GWG/@@download/ENCFF754GWG.bam released s3://encode-public/2020/06/14/ae8857a9-3302-4d5d-a621-4349f5b11c8d/ENCFF754GWG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF380BFA bam bam alignments GRCh38 ENCSR959CIX Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0001285 nephron organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF607DUO/, /files/ENCFF860RSV/, /files/ENCFF557NOV/, /files/ENCFF110MCL/, /files/ENCFF770HZS/, /files/ENCFF667PLT/, /files/ENCFF644HZD/, /files/ENCFF494NHX/, /files/ENCFF747VLC/ 2500906570 ENCODE Processing Pipeline d95f5c941ca0c70c1e7d2b63a813cc07 https://www.encodeproject.org/files/ENCFF380BFA/@@download/ENCFF380BFA.bam released s3://encode-public/2020/06/14/48438a98-b104-436b-88cd-64a54cb75918/ENCFF380BFA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF810NNT tagAlign tagAlign alignments hg19 ENCSR961QMI Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF057IKR/ 145811555 Anshul Kundaje, Stanford 776d03a0d43e5d4635a8a51346079022 https://www.encodeproject.org/files/ENCFF810NNT/@@download/ENCFF810NNT.tagAlign.gz archived s3://encode-public/2016/03/30/73ce276e-a8a7-4fe0-918d-1d1af66be74d/ENCFF810NNT.tagAlign.gz Lab custom hg19 archived low read length ENCFF057IKR fastq fastq reads ENCSR961QMI Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1188305453 Zhiping Weng, UMass f55dd8729189aed60e3d06dea2665c4d SRA:SRR449623 https://www.encodeproject.org/files/ENCFF057IKR/@@download/ENCFF057IKR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/bfe82b86-91bb-4795-b54a-0a2072236eba/ENCFF057IKR.fastq.gz low read length ENCFF108YLG bam bam unfiltered alignments hg19 ENCSR961QMI Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF057IKR/ 1445158441 ENCODE Processing Pipeline 315c4137441e14732d87c8d139b02a5d https://www.encodeproject.org/files/ENCFF108YLG/@@download/ENCFF108YLG.bam released s3://encode-public/2016/12/19/ed3a5913-7c15-474b-8fab-b5e40be01f77/ENCFF108YLG.bam ENCODE3 hg19 archived low read length ENCFF580GFP 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ENCFF623DTG bam bam alignments GRCh38 ENCSR961QMI Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF057IKR/ 869234360 ENCODE Processing Pipeline f18ac187d38491fc551028b1806100ef https://www.encodeproject.org/files/ENCFF623DTG/@@download/ENCFF623DTG.bam released s3://encode-public/2016/12/19/41f2021b-88ff-47a5-a369-a0d641cf9ba6/ENCFF623DTG.bam ENCODE3 GRCh38 archived low read length ENCFF719BKE bam bam unfiltered alignments GRCh38 ENCSR961QMI Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF057IKR/, /files/ENCFF110MCL/ 1404997875 ENCODE Processing Pipeline 5b8f42fc155bacc64cf928131410137e https://www.encodeproject.org/files/ENCFF719BKE/@@download/ENCFF719BKE.bam released s3://encode-public/2020/10/08/bc42043a-61f1-4404-b4e7-906734b23b0c/ENCFF719BKE.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF435REQ bam bam alignments GRCh38 ENCSR961QMI Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF057IKR/, /files/ENCFF110MCL/ 963229600 ENCODE Processing Pipeline d7a21ac3e7b691e8db7eb91b530eb36d https://www.encodeproject.org/files/ENCFF435REQ/@@download/ENCFF435REQ.bam released s3://encode-public/2020/10/08/39c772db-6dcb-4d88-8db3-a4bd4e88d493/ENCFF435REQ.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF685GYB tagAlign tagAlign alignments hg19 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF416GCS/ 110009223 Anshul Kundaje, Stanford 74126252dd4b9a1102596071a862871c https://www.encodeproject.org/files/ENCFF685GYB/@@download/ENCFF685GYB.tagAlign.gz archived s3://encode-public/2016/05/02/e8fed993-ad40-4ef8-b6d2-76dac96d2eb6/ENCFF685GYB.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF643HBA bam bam unfiltered alignments GRCh38 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF416GCS/ 997041253 ENCODE Processing Pipeline 9c0a728ab57a03f4d2efc3c055aaa95e https://www.encodeproject.org/files/ENCFF643HBA/@@download/ENCFF643HBA.bam released s3://encode-public/2020/10/08/011b6103-6de5-4e98-a742-e3b2920b6051/ENCFF643HBA.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF416GCS fastq fastq reads ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 822031418 Zhiping Weng, UMass 716cb22ac8ee92e0fe2a05133e355c05 SRA:SRR364413 https://www.encodeproject.org/files/ENCFF416GCS/@@download/ENCFF416GCS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/26/8e1575a2-94bb-42a5-8aba-22f66500bf19/ENCFF416GCS.fastq.gz low read depth, low read length ENCFF141YYU bam bam unfiltered alignments hg19 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF416GCS/, /files/ENCFF807MUK/ 1027500667 ENCODE Processing Pipeline 1bc915424c39b55268f4270a7c24c632 https://www.encodeproject.org/files/ENCFF141YYU/@@download/ENCFF141YYU.bam released s3://encode-public/2016/12/19/77c3b77c-988b-4459-b9e9-625051d3512b/ENCFF141YYU.bam ENCODE3 hg19 archived low read depth, low read length ENCFF537QML bam bam unfiltered alignments GRCh38 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF416GCS/, /files/ENCFF643CGH/ 1030838592 ENCODE Processing Pipeline 5ecfebc546fc15ebc4c9173e9ee6b7b6 https://www.encodeproject.org/files/ENCFF537QML/@@download/ENCFF537QML.bam released s3://encode-public/2016/12/19/b8261d11-9bc3-4f88-80fe-de9f53352049/ENCFF537QML.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF507VYJ bam bam alignments hg19 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF416GCS/, /files/ENCFF807MUK/ 655799684 ENCODE Processing Pipeline a96c2442fab5adad56a5cd096932b029 https://www.encodeproject.org/files/ENCFF507VYJ/@@download/ENCFF507VYJ.bam released s3://encode-public/2016/12/19/a78b1bb3-f657-4f75-91d4-4559828579aa/ENCFF507VYJ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF435UQW bam bam alignments GRCh38 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF416GCS/, /files/ENCFF643CGH/ 655495464 ENCODE Processing Pipeline ba2be86059972860417c6fa8e1029e31 https://www.encodeproject.org/files/ENCFF435UQW/@@download/ENCFF435UQW.bam released s3://encode-public/2016/12/19/5f0ea88f-78df-4d7e-8358-5d0544af94c8/ENCFF435UQW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF737ZSI bam bam alignments GRCh38 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF416GCS/ 715666707 ENCODE Processing Pipeline 7b6bccec594d68b4ba4afb9b1ef1df4d https://www.encodeproject.org/files/ENCFF737ZSI/@@download/ENCFF737ZSI.bam released s3://encode-public/2020/10/08/b0fa9298-929a-4211-89b1-88083217e1d1/ENCFF737ZSI.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF625BBT bam bam unfiltered alignments GRCh38 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF416GCS/ 892488380 ENCODE Processing Pipeline 007992aafcced2395b9d178c9994d64a https://www.encodeproject.org/files/ENCFF625BBT/@@download/ENCFF625BBT.bam released s3://encode-public/2020/10/21/09504405-bdfd-4d86-9869-df3f86dc160a/ENCFF625BBT.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF543NWV bam bam alignments GRCh38 ENCSR214MNL Control ChIP-seq /human-donors/ENCDO222AAA/ EFO:0003045 H9 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 30 /files/ENCFF110MCL/, /files/ENCFF416GCS/ 631777260 ENCODE Processing Pipeline 5622f5724a5edd5713001c650f0c8d21 https://www.encodeproject.org/files/ENCFF543NWV/@@download/ENCFF543NWV.bam released s3://encode-public/2020/10/21/a34c5c0f-64ed-480b-ad61-8e41ebb77304/ENCFF543NWV.bam ENCODE4 v1.5.1 GRCh38 released low read depth, low read length ENCFF851PMI tagAlign tagAlign alignments hg19 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO981EWY/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172587/ 135190931 Anshul Kundaje, Stanford 0ca3c5715b75649c13ec295f738dcd66 https://www.encodeproject.org/files/ENCFF851PMI/@@download/ENCFF851PMI.tagAlign.gz archived s3://encode-public/2016/03/30/ff44b38d-b8b3-4f82-9d6b-81ab276ccca2/ENCFF851PMI.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth ENCFF989DWH tagAlign tagAlign alignments hg19 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO030VWZ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_2 /files/SRR2172593/, /files/SRR2172594/ 64587947 Anshul Kundaje, Stanford 709b8f79bae79747b16c99054bdb5b57 https://www.encodeproject.org/files/ENCFF989DWH/@@download/ENCFF989DWH.tagAlign.gz archived s3://encode-public/2016/03/30/4696c5fe-97c5-4d06-9af3-5c8f7bd188ea/ENCFF989DWH.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read depth ENCFF246VYN bam bam redacted unfiltered alignments GRCh38 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO030VWZ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_2 76 /files/ENCFF643CGH/, /files/ENCFF822KLG/, /files/ENCFF439XIF/ 158025763 ENCODE Processing Pipeline 145453905e27e7c355b570474a61d70c https://www.encodeproject.org/files/ENCFF246VYN/@@download/ENCFF246VYN.bam released s3://encode-public/2017/11/09/78af8701-9c25-4b3b-8539-f79b9f7f3a8d/ENCFF246VYN.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF258LZY bam bam redacted alignments GRCh38 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO030VWZ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_2 76 /files/ENCFF643CGH/, /files/ENCFF822KLG/, /files/ENCFF439XIF/ 120031341 ENCODE Processing Pipeline caa4d49c00348afb79d3f1ca2fb1f9d8 https://www.encodeproject.org/files/ENCFF258LZY/@@download/ENCFF258LZY.bam released s3://encode-public/2017/11/09/57824773-3f3b-4490-be6e-ba32bca19aee/ENCFF258LZY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF864TEV bam bam redacted unfiltered alignments GRCh38 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO981EWY/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF671OPY/ 351447144 ENCODE Processing Pipeline e07ce80a8409ba611d48cbcf0b7b2512 https://www.encodeproject.org/files/ENCFF864TEV/@@download/ENCFF864TEV.bam released s3://encode-public/2017/11/09/168126ee-a3ba-4f04-b972-ad5717f1f943/ENCFF864TEV.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF804LDQ bam bam redacted alignments GRCh38 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO981EWY/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF671OPY/ 242431389 ENCODE Processing Pipeline bca949dd946bd6e81bec80e9eb33fc8f https://www.encodeproject.org/files/ENCFF804LDQ/@@download/ENCFF804LDQ.bam released s3://encode-public/2017/11/09/f6ccfbde-fa2d-4751-91ba-65b44e8a0407/ENCFF804LDQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read depth ENCFF874DXU bam bam redacted alignments hg19 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO030VWZ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_2 76 /files/ENCFF807MUK/, /files/ENCFF822KLG/, /files/ENCFF439XIF/ 119909758 ENCODE Processing Pipeline 72581299e9546ac644e4c22ef75f06b8 https://www.encodeproject.org/files/ENCFF874DXU/@@download/ENCFF874DXU.bam released s3://encode-public/2018/01/20/2b8abe66-4a0a-4aec-8525-9ef5ef3eff44/ENCFF874DXU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF513COS bam bam redacted unfiltered alignments hg19 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO030VWZ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_2 76 /files/ENCFF807MUK/, /files/ENCFF822KLG/, /files/ENCFF439XIF/ 155889432 ENCODE Processing Pipeline 27fa6bf1b117e8f7f1b5ffe3d3237b73 https://www.encodeproject.org/files/ENCFF513COS/@@download/ENCFF513COS.bam released s3://encode-public/2018/01/20/4e78a2d9-a063-489e-8b73-0820cea26b2e/ENCFF513COS.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF157YPO bam bam redacted unfiltered alignments hg19 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO981EWY/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF671OPY/ 344943742 ENCODE Processing Pipeline 360f86554903c4564c597d5be0dafc2f https://www.encodeproject.org/files/ENCFF157YPO/@@download/ENCFF157YPO.bam released s3://encode-public/2018/01/20/6e29497d-88af-4c5e-be64-deca722b72fc/ENCFF157YPO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF923SEC bam bam redacted alignments hg19 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO981EWY/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF671OPY/ 242077497 ENCODE Processing Pipeline 56f5590e165b42f5c39b44e48b7086ae https://www.encodeproject.org/files/ENCFF923SEC/@@download/ENCFF923SEC.bam released s3://encode-public/2018/01/20/3caf7993-815e-43b5-986a-565374959791/ENCFF923SEC.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth ENCFF946QTY bam bam redacted alignments GRCh38 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO030VWZ/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 2 2_2 76 /files/ENCFF929AJD/, /files/ENCFF110MCL/, /files/ENCFF134IYM/ 695327568 ENCODE Processing Pipeline 9bfb7cddddfe76fcd145057ad7e21474 https://www.encodeproject.org/files/ENCFF946QTY/@@download/ENCFF946QTY.bam released s3://encode-public/2021/01/28/514d6c7e-4787-4186-8b61-4b26584e7a12/ENCFF946QTY.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF151QHQ bam bam redacted alignments GRCh38 ENCSR003IGU Control ChIP-seq /human-donors/ENCDO981EWY/ UBERON:0000955 brain tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF723ILC/ 1267661886 ENCODE Processing Pipeline c6f7a8fcf9e0a095e58723d6336af2cc https://www.encodeproject.org/files/ENCFF151QHQ/@@download/ENCFF151QHQ.bam released s3://encode-public/2021/01/28/831fbe35-6475-4e7c-baf0-f3b209449303/ENCFF151QHQ.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF319MHX fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 509866537 Bradley Bernstein, Broad 68f11eb290107d43e76f0374528363f8 SRA:SRR14107765 https://www.encodeproject.org/files/ENCFF319MHX/@@download/ENCFF319MHX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3de0de2c-06c3-43f7-b57a-c2a164646c18/ENCFF319MHX.fastq.gz ENCFF802CEZ fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 517526704 Bradley Bernstein, Broad 74a2039abc5b3f1bd506d930216fcf4a SRA:SRR14107766 https://www.encodeproject.org/files/ENCFF802CEZ/@@download/ENCFF802CEZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/479b6b20-0daa-43c9-b70d-5df8b5019f04/ENCFF802CEZ.fastq.gz ENCFF469FKH fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 588354427 Bradley Bernstein, Broad 7d87b474ab38597fde567352b4853581 SRA:SRR14107767 https://www.encodeproject.org/files/ENCFF469FKH/@@download/ENCFF469FKH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4a7e7699-8a8a-4421-b53f-8303411ae37c/ENCFF469FKH.fastq.gz ENCFF917MOC fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 504188099 Bradley Bernstein, Broad fc88daa555640eb8a8a32315a79d6fd0 SRA:SRR14107768 https://www.encodeproject.org/files/ENCFF917MOC/@@download/ENCFF917MOC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/157ead74-fafe-400b-adcd-71c443cf3338/ENCFF917MOC.fastq.gz ENCFF125HRP fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 509117494 Bradley Bernstein, Broad 6a72bcdf154f95ac4d8be067db9257b8 SRA:SRR14107769 https://www.encodeproject.org/files/ENCFF125HRP/@@download/ENCFF125HRP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8fde98cb-9111-4771-b049-0b4f9bfed5ee/ENCFF125HRP.fastq.gz ENCFF287CYP fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 603174019 Bradley Bernstein, Broad 261022c507eeb45b953f5deec3dcb7e0 SRA:SRR14107770 https://www.encodeproject.org/files/ENCFF287CYP/@@download/ENCFF287CYP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3eb64e2f-9a9d-4b18-a49a-367b5f8a70a7/ENCFF287CYP.fastq.gz ENCFF597AKT fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 736701354 Bradley Bernstein, Broad a8d2924b5954b37fdd7ebaf676465b72 SRA:SRR14107773 https://www.encodeproject.org/files/ENCFF597AKT/@@download/ENCFF597AKT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6e8a241e-d736-4fb1-b7a9-0b445a57ff5b/ENCFF597AKT.fastq.gz ENCFF025VMD fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 718213144 Bradley Bernstein, Broad 47867e58a8580bf90d6bccf1926d40a4 SRA:SRR14107774 https://www.encodeproject.org/files/ENCFF025VMD/@@download/ENCFF025VMD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2b4deaad-1fab-4139-800f-a70abdfe6ccd/ENCFF025VMD.fastq.gz ENCFF550QHV fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 732742988 Bradley Bernstein, Broad 889eeb3dce9f6bfb0dfb17fe04ae65c3 SRA:SRR14107775 https://www.encodeproject.org/files/ENCFF550QHV/@@download/ENCFF550QHV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/02ab04a7-b0a7-4d71-a604-92c0129036c6/ENCFF550QHV.fastq.gz ENCFF092DEJ fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 741519629 Bradley Bernstein, Broad 53dfcfc6e7c0bc0d3049559da0b89b90 SRA:SRR14107776 https://www.encodeproject.org/files/ENCFF092DEJ/@@download/ENCFF092DEJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7349d4d1-6702-405c-8f65-2f8d596d4842/ENCFF092DEJ.fastq.gz ENCFF284IIO fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 606248472 Bradley Bernstein, Broad 7e7a9588d089a36913f05fc6e0dad4fe SRA:SRR14107771 https://www.encodeproject.org/files/ENCFF284IIO/@@download/ENCFF284IIO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9cf1a596-c3e7-4117-8f49-9989aece7392/ENCFF284IIO.fastq.gz ENCFF726DGG fastq fastq reads ENCSR650AIN Control ChIP-seq /human-donors/ENCDO575EGL/ UBERON:0002168 left lung tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 598954143 Bradley Bernstein, Broad cd764d71045011d49c4f0bec18846e91 SRA:SRR14107772 https://www.encodeproject.org/files/ENCFF726DGG/@@download/ENCFF726DGG.fastq.gz Illumina NextSeq 500 released 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archived missing genetic modification characterization, missing biosample characterization ENCFF626QII bam bam alignments dm6 ENCSR034KIV Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2017-11-22 modERN sonication (Bioruptor generic) 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characterization ENCFF292LQU bigWig bigWig read-depth normalized signal dm6 ENCSR034KIV Control ChIP-seq /fly-donors/ENCDO932DDL/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39645/', '/genes/19834908/'], '@type': ['Target', 'Item'], 'name': 'CG6854-dmelanogaster', 'label': 'CG6854', '@id': '/targets/CG6854-dmelanogaster/', 'title': 'CG6854 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'e3b42e8b-8e55-45a9-9b55-8b764f41fcdf', 'status': 'released'} dm3 3L 15086307 15109138 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF626QII/ 17525540 Kevin 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s3://encode-public/2016/10/20/dd47903b-cd79-40e2-b336-de55ef07590b/ENCFF851OXO.fastq.gz low read length, mixed read lengths ENCFF410FYY bam bam alignments GRCh38 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2, 1_3 36 /files/ENCFF110MCL/, /files/ENCFF851OXO/, /files/ENCFF240RBR/, /files/ENCFF197TBK/ 2080220835 ENCODE Processing Pipeline 24e09d6abf1590e88e8d139515a68c28 https://www.encodeproject.org/files/ENCFF410FYY/@@download/ENCFF410FYY.bam released s3://encode-public/2020/10/09/7db58e2d-ae02-43e5-a032-6ce4b9abf6ad/ENCFF410FYY.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF027UBL bam bam alignments GRCh38 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF643CGH/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 1414878691 ENCODE Processing Pipeline 20683d7b58118792c0e79298604d0815 https://www.encodeproject.org/files/ENCFF027UBL/@@download/ENCFF027UBL.bam released s3://encode-public/2017/03/27/acfe5ff9-d387-4388-8a8b-ae8de9332059/ENCFF027UBL.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF496UNC bam bam unfiltered alignments GRCh38 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2, 1_3 36 /files/ENCFF197TBK/, /files/ENCFF643CGH/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 3083543333 ENCODE Processing Pipeline 197a0e99ceafbc08679c77e89ed2ef07 https://www.encodeproject.org/files/ENCFF496UNC/@@download/ENCFF496UNC.bam released s3://encode-public/2017/03/27/6632c93b-e48a-43ee-8924-2a750c14c127/ENCFF496UNC.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF670KMY bam bam unfiltered alignments GRCh38 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF643CGH/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 2273533103 ENCODE Processing Pipeline 0e65336c12e663e01161c59e18760064 https://www.encodeproject.org/files/ENCFF670KMY/@@download/ENCFF670KMY.bam released s3://encode-public/2017/03/27/d0237ae7-0245-4cf3-aae6-33c7143bbc89/ENCFF670KMY.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF485TQK bam bam unfiltered alignments hg19 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF807MUK/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 2258231719 ENCODE Processing Pipeline 9b2e0c7eda3b3bd89f37135a7493cbfc https://www.encodeproject.org/files/ENCFF485TQK/@@download/ENCFF485TQK.bam released s3://encode-public/2017/03/27/fc83529e-53ad-41a2-a39f-090423dd1663/ENCFF485TQK.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF420JJY bam bam alignments GRCh38 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2, 1_3 36 /files/ENCFF197TBK/, /files/ENCFF643CGH/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 1862547168 ENCODE Processing Pipeline 24c3088467b873f8bed7a44e20830cc8 https://www.encodeproject.org/files/ENCFF420JJY/@@download/ENCFF420JJY.bam released s3://encode-public/2017/03/27/5cabeed9-1667-483b-bf88-2ac895939db9/ENCFF420JJY.bam ENCODE3 GRCh38 archived low read length, mixed read lengths ENCFF083ELV bam bam alignments hg19 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2, 1_3 36 /files/ENCFF197TBK/, /files/ENCFF807MUK/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 1862573656 ENCODE Processing Pipeline 1b44761f1dbd24e65402ba01930a1af9 https://www.encodeproject.org/files/ENCFF083ELV/@@download/ENCFF083ELV.bam released s3://encode-public/2017/03/27/6418ed48-53f8-40e5-9ecc-e242bb2a9f7d/ENCFF083ELV.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF135TFU bam bam alignments hg19 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2 50 /files/ENCFF807MUK/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 1413807925 ENCODE Processing Pipeline 0efc92ba44c93596c3b831e40769cced https://www.encodeproject.org/files/ENCFF135TFU/@@download/ENCFF135TFU.bam released s3://encode-public/2017/03/27/116a3c96-468a-4300-b285-a225e3464630/ENCFF135TFU.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF555EIM bam bam unfiltered alignments hg19 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2, 1_3 36 /files/ENCFF197TBK/, /files/ENCFF807MUK/, /files/ENCFF240RBR/, /files/ENCFF851OXO/ 3058438865 ENCODE Processing Pipeline 3e6994f919c02fdf284d56143982c5a8 https://www.encodeproject.org/files/ENCFF555EIM/@@download/ENCFF555EIM.bam released s3://encode-public/2017/03/27/04ebf07d-4a94-4f67-9afb-f7b89748ac67/ENCFF555EIM.bam ENCODE3 hg19 archived low read length, mixed read lengths ENCFF442BRL bam bam unfiltered alignments GRCh38 ENCSR858ROP Control ChIP-seq /human-donors/ENCDO424HVB/ UBERON:0001043 esophagus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1, 1_2, 1_3 36 /files/ENCFF110MCL/, /files/ENCFF851OXO/, /files/ENCFF240RBR/, /files/ENCFF197TBK/ 2990439039 ENCODE Processing Pipeline 5040c2639e1cbb4616ae46c84395ced3 https://www.encodeproject.org/files/ENCFF442BRL/@@download/ENCFF442BRL.bam released s3://encode-public/2020/10/09/b94221f1-899f-4230-bea6-3e8e75fc7e99/ENCFF442BRL.bam ENCODE4 v1.5.1 GRCh38 released low read length, mixed read lengths ENCFF751RTR fastq fastq reads ENCSR082WMZ Control ChIP-seq /fly-donors/ENCDO941AUK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740592/'], '@type': ['Target', 'Item'], 'name': 'ATbp-dmelanogaster', 'label': 'ATbp', '@id': '/targets/ATbp-dmelanogaster/', 'title': 'ATbp (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be5ea201-f66a-4012-8620-92732ebc4c08', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1032298025 Kevin White, UChicago 0e85c0b9e82e5e7ba335b49f72ff28cf https://www.encodeproject.org/files/ENCFF751RTR/@@download/ENCFF751RTR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/883c8cb4-e3f7-41c7-be42-533477212d0e/ENCFF751RTR.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF814ARB bam bam alignments dm3 ENCSR082WMZ Control ChIP-seq /fly-donors/ENCDO941AUK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740592/'], '@type': ['Target', 'Item'], 'name': 'ATbp-dmelanogaster', 'label': 'ATbp', '@id': '/targets/ATbp-dmelanogaster/', 'title': 'ATbp (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be5ea201-f66a-4012-8620-92732ebc4c08', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF751RTR/ 1388406010 Kevin White, UChicago 5d2967c5e14a2190076afa31a1f9a12a https://www.encodeproject.org/files/ENCFF814ARB/@@download/ENCFF814ARB.bam released s3://encode-public/2017/09/13/9b2dcaff-6dbf-4b1b-a89b-514e9f3f5cbf/ENCFF814ARB.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF295ZVD bam bam alignments dm6 ENCSR082WMZ Control ChIP-seq /fly-donors/ENCDO941AUK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740592/'], '@type': ['Target', 'Item'], 'name': 'ATbp-dmelanogaster', 'label': 'ATbp', '@id': '/targets/ATbp-dmelanogaster/', 'title': 'ATbp (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be5ea201-f66a-4012-8620-92732ebc4c08', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF751RTR/ 1376857828 Kevin White, UChicago e61f2341f248a0a1a8b0604815245cd1 https://www.encodeproject.org/files/ENCFF295ZVD/@@download/ENCFF295ZVD.bam released s3://encode-public/2017/09/13/13c9b563-3af7-4253-aea2-896d4fcb5458/ENCFF295ZVD.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF653VMG bigWig bigWig signal of unique reads dm3 ENCSR082WMZ Control ChIP-seq /fly-donors/ENCDO941AUK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740592/'], '@type': ['Target', 'Item'], 'name': 'ATbp-dmelanogaster', 'label': 'ATbp', '@id': '/targets/ATbp-dmelanogaster/', 'title': 'ATbp (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be5ea201-f66a-4012-8620-92732ebc4c08', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF814ARB/ 15451867 Kevin White, UChicago 323b372f4748662272301046c27cccd4 https://www.encodeproject.org/files/ENCFF653VMG/@@download/ENCFF653VMG.bigWig released s3://encode-public/2017/09/14/3a0cb01d-84d6-4274-81e5-cb174888b28c/ENCFF653VMG.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF350QQY bigWig bigWig read-depth normalized signal dm3 ENCSR082WMZ Control ChIP-seq /fly-donors/ENCDO941AUK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740592/'], '@type': ['Target', 'Item'], 'name': 'ATbp-dmelanogaster', 'label': 'ATbp', '@id': '/targets/ATbp-dmelanogaster/', 'title': 'ATbp (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be5ea201-f66a-4012-8620-92732ebc4c08', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF814ARB/ 15442766 Kevin White, UChicago 2309495fb525c3c27c0d94bb64672c02 https://www.encodeproject.org/files/ENCFF350QQY/@@download/ENCFF350QQY.bigWig released s3://encode-public/2017/09/14/b525573d-ea73-43f3-88a2-d7a68fba1913/ENCFF350QQY.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF828XEM bigWig bigWig read-depth normalized signal dm6 ENCSR082WMZ Control ChIP-seq /fly-donors/ENCDO941AUK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/5740592/'], '@type': ['Target', 'Item'], 'name': 'ATbp-dmelanogaster', 'label': 'ATbp', '@id': '/targets/ATbp-dmelanogaster/', 'title': 'ATbp (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': 'be5ea201-f66a-4012-8620-92732ebc4c08', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF295ZVD/ 13991053 Kevin White, UChicago 0bf430aab75200510c119eea8066e60c https://www.encodeproject.org/files/ENCFF828XEM/@@download/ENCFF828XEM.bigWig released s3://encode-public/2017/09/14/fe122155-8d48-497b-a913-2719b430e38c/ENCFF828XEM.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF652HJC bigWig bigWig signal of unique reads dm6 ENCSR082WMZ Control ChIP-seq /fly-donors/ENCDO941AUK/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 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heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 355034702 Bradley Bernstein, Broad 103c9aeb1dd018e8c322ce3d59c2eab0 SRA:SRR13804265 https://www.encodeproject.org/files/ENCFF562ZFW/@@download/ENCFF562ZFW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e31650b4-1ee5-456b-96f5-4a733644a08c/ENCFF562ZFW.fastq.gz ENCFF827SFI fastq fastq reads ENCSR839VEU Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 361652510 Bradley Bernstein, Broad 86a9fe5a087ecd211b962c1268a008ee SRA:SRR13804266 https://www.encodeproject.org/files/ENCFF827SFI/@@download/ENCFF827SFI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5609e2c5-e7bc-4273-935c-f6327b743840/ENCFF827SFI.fastq.gz ENCFF468JQT fastq fastq reads ENCSR839VEU Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 316040653 Bradley Bernstein, Broad 1d45ef0af04a977e64e2905ee7578636 SRA:SRR13804261 https://www.encodeproject.org/files/ENCFF468JQT/@@download/ENCFF468JQT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/7a08c085-8e61-4d8d-9411-74fcd89da91c/ENCFF468JQT.fastq.gz ENCFF804CBZ fastq fastq reads ENCSR839VEU Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 310607460 Bradley Bernstein, Broad 46ae7f7491280f379ae81944ded8b8ca SRA:SRR13804262 https://www.encodeproject.org/files/ENCFF804CBZ/@@download/ENCFF804CBZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8df57db8-60e2-4d53-96fb-5f9f5cf5ca91/ENCFF804CBZ.fastq.gz ENCFF925OBX fastq fastq reads ENCSR839VEU Control ChIP-seq /human-donors/ENCDO392CRK/ UBERON:0002080 heart right ventricle tissue Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 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s3://encode-public/2020/06/14/99e6c097-2114-4d8e-90cf-5ebcaf0dfef4/ENCFF671UZM.bam ENCODE4 v1.4.0 GRCh38 released ENCFF978QFZ fastq fastq reads ENCSR735CQR Control ChIP-seq /fly-donors/ENCDO633CRB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41038/'], '@type': ['Target', 'Item'], 'name': 'nom-dmelanogaster', 'label': 'nom', '@id': '/targets/nom-dmelanogaster/', 'title': 'nom (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b871d7dd-1449-4066-81eb-dc48d746f8ab', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 1085692134 Kevin White, UChicago 1e190e90c41059705376b773bd35555f https://www.encodeproject.org/files/ENCFF978QFZ/@@download/ENCFF978QFZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/202fc198-0add-48f6-aab1-838b5deda9a7/ENCFF978QFZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF749XYD bam bam alignments dm3 ENCSR735CQR Control ChIP-seq /fly-donors/ENCDO633CRB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41038/'], '@type': ['Target', 'Item'], 'name': 'nom-dmelanogaster', 'label': 'nom', '@id': '/targets/nom-dmelanogaster/', 'title': 'nom (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b871d7dd-1449-4066-81eb-dc48d746f8ab', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF978QFZ/ 1483210827 Kevin White, UChicago 6b13739c6606fa759e382f222d420dc4 https://www.encodeproject.org/files/ENCFF749XYD/@@download/ENCFF749XYD.bam released s3://encode-public/2017/09/12/e7f8f345-7b2d-4acb-9022-011a8fff6474/ENCFF749XYD.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF482MAQ bam bam alignments dm6 ENCSR735CQR Control ChIP-seq /fly-donors/ENCDO633CRB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 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bigWig signal of unique reads dm3 ENCSR735CQR Control ChIP-seq /fly-donors/ENCDO633CRB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41038/'], '@type': ['Target', 'Item'], 'name': 'nom-dmelanogaster', 'label': 'nom', '@id': '/targets/nom-dmelanogaster/', 'title': 'nom (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b871d7dd-1449-4066-81eb-dc48d746f8ab', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF749XYD/ 15578160 Kevin White, UChicago 94c012af33b6c8d06a697febf928a18c https://www.encodeproject.org/files/ENCFF040HJN/@@download/ENCFF040HJN.bigWig released s3://encode-public/2017/09/13/3a659746-eb76-42c8-9053-7e9fa3d7d670/ENCFF040HJN.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF771VBK bigWig bigWig read-depth normalized signal dm3 ENCSR735CQR Control ChIP-seq /fly-donors/ENCDO633CRB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41038/'], '@type': ['Target', 'Item'], 'name': 'nom-dmelanogaster', 'label': 'nom', '@id': '/targets/nom-dmelanogaster/', 'title': 'nom (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b871d7dd-1449-4066-81eb-dc48d746f8ab', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF749XYD/ 15534057 Kevin White, UChicago 6b3f6fbe1b64bac7cefac7f16198e3c7 https://www.encodeproject.org/files/ENCFF771VBK/@@download/ENCFF771VBK.bigWig released s3://encode-public/2017/09/13/4fa2f3fd-bc8a-4af8-b36e-b291707f7a7b/ENCFF771VBK.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF360TMR bigWig bigWig read-depth normalized signal dm6 ENCSR735CQR Control ChIP-seq /fly-donors/ENCDO633CRB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41038/'], '@type': ['Target', 'Item'], 'name': 'nom-dmelanogaster', 'label': 'nom', '@id': '/targets/nom-dmelanogaster/', 'title': 'nom (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b871d7dd-1449-4066-81eb-dc48d746f8ab', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF482MAQ/ 17719919 Kevin White, UChicago 94de4d7156802b226f04aacf7394299f https://www.encodeproject.org/files/ENCFF360TMR/@@download/ENCFF360TMR.bigWig released s3://encode-public/2017/09/14/cb97619b-b814-472b-b7a7-57fb16b276a9/ENCFF360TMR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF135NGH bigWig bigWig signal of unique reads dm6 ENCSR735CQR Control ChIP-seq /fly-donors/ENCDO633CRB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41038/'], '@type': ['Target', 'Item'], 'name': 'nom-dmelanogaster', 'label': 'nom', '@id': '/targets/nom-dmelanogaster/', 'title': 'nom (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b871d7dd-1449-4066-81eb-dc48d746f8ab', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF482MAQ/ 17772370 Kevin White, UChicago a2a12f93933967abdd407924c7941c73 https://www.encodeproject.org/files/ENCFF135NGH/@@download/ENCFF135NGH.bigWig released 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Pipeline 8d8bf9e43e5084abe4d52e05e2807fa9 https://www.encodeproject.org/files/ENCFF368QEM/@@download/ENCFF368QEM.bam released s3://encode-public/2020/08/06/14677fcb-d970-42ef-bc92-1c3a08a5e08f/ENCFF368QEM.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF344SHY bam bam alignments GRCh38 ENCSR577BCL Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF587OOH/ 1676829667 ENCODE Processing Pipeline 6aa905bc6cad28b373468130c3386ec6 https://www.encodeproject.org/files/ENCFF344SHY/@@download/ENCFF344SHY.bam released s3://encode-public/2020/08/06/4d205a82-69f1-4d8f-b74a-a5b80ea7fc9f/ENCFF344SHY.bam ENCODE4 GRCh38 released mild to moderate bottlenecking ENCFF170FQI bam bam unfiltered alignments GRCh38 ENCSR577BCL Control ChIP-seq /human-donors/ENCDO478OMA/ UBERON:0002048 lung tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF587OOH/ 2062401172 ENCODE 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https://www.encodeproject.org/files/ENCFF582UYY/@@download/ENCFF582UYY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/9c5ef860-562b-418c-a384-5750bcb378aa/ENCFF582UYY.fastq.gz ENCFF143KZG fastq fastq reads ENCSR089YGV Control ChIP-seq /fly-donors/ENCDO879FNV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39103/'], '@type': ['Target', 'Item'], 'name': 'Jarid2-dmelanogaster', 'label': 'Jarid2', '@id': '/targets/Jarid2-dmelanogaster/', 'title': 'Jarid2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '88ccdf89-a8c1-473e-ad7a-defc4b28906b', 'status': 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modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF809DUF bigWig bigWig signal of unique reads dm3 ENCSR089YGV Control ChIP-seq /fly-donors/ENCDO879FNV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39103/'], '@type': ['Target', 'Item'], 'name': 'Jarid2-dmelanogaster', 'label': 'Jarid2', '@id': '/targets/Jarid2-dmelanogaster/', 'title': 'Jarid2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '88ccdf89-a8c1-473e-ad7a-defc4b28906b', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF365YGD/ 15382502 Kevin White, UChicago 748d3c0f715e9014c57b2506efc3e294 https://www.encodeproject.org/files/ENCFF809DUF/@@download/ENCFF809DUF.bigWig released s3://encode-public/2017/09/13/19a43b12-58a9-4e23-83d3-f4ac85ac1ad5/ENCFF809DUF.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF304JHR bigWig bigWig read-depth normalized signal dm3 ENCSR089YGV Control ChIP-seq /fly-donors/ENCDO879FNV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39103/'], '@type': ['Target', 'Item'], 'name': 'Jarid2-dmelanogaster', 'label': 'Jarid2', '@id': '/targets/Jarid2-dmelanogaster/', 'title': 'Jarid2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '88ccdf89-a8c1-473e-ad7a-defc4b28906b', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF365YGD/ 15383732 Kevin White, UChicago 9a6e01d34b92e07b57c9f5bdf4d4508f https://www.encodeproject.org/files/ENCFF304JHR/@@download/ENCFF304JHR.bigWig released s3://encode-public/2017/09/13/b93c591a-babe-48c2-9d3f-60aa40db20e6/ENCFF304JHR.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF990ONL bigWig bigWig signal of unique reads dm6 ENCSR089YGV Control ChIP-seq /fly-donors/ENCDO879FNV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39103/'], '@type': ['Target', 'Item'], 'name': 'Jarid2-dmelanogaster', 'label': 'Jarid2', '@id': '/targets/Jarid2-dmelanogaster/', 'title': 'Jarid2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '88ccdf89-a8c1-473e-ad7a-defc4b28906b', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF149XSG/ 17558996 Kevin White, UChicago ae2809f368c38959932d6f6b6bff99f9 https://www.encodeproject.org/files/ENCFF990ONL/@@download/ENCFF990ONL.bigWig released s3://encode-public/2017/09/14/07bec8a3-3446-4776-8bc3-4c5564df528f/ENCFF990ONL.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF648TMR bigWig bigWig read-depth normalized signal dm6 ENCSR089YGV Control ChIP-seq /fly-donors/ENCDO879FNV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39103/'], '@type': ['Target', 'Item'], 'name': 'Jarid2-dmelanogaster', 'label': 'Jarid2', '@id': '/targets/Jarid2-dmelanogaster/', 'title': 'Jarid2 (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '88ccdf89-a8c1-473e-ad7a-defc4b28906b', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF149XSG/ 17575901 Kevin White, UChicago fab04855c7511c9dd5b970829932f2c9 https://www.encodeproject.org/files/ENCFF648TMR/@@download/ENCFF648TMR.bigWig released s3://encode-public/2017/09/14/360f76b5-905e-4e9c-bf71-9a9416aa626c/ENCFF648TMR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF013XNB fastq fastq reads ENCSR462RAG Control ChIP-seq /fly-donors/ENCDO584KXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36957/'], '@type': ['Target', 'Item'], 'name': 'Lhr-dmelanogaster', 'label': 'Lhr', '@id': '/targets/Lhr-dmelanogaster/', 'title': 'Lhr (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0f4c0ae1-34fe-4b1d-ac9b-23bff041056a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 897770164 Kevin White, UChicago e3986bc65a16dc4bf5ca26b07e886567 https://www.encodeproject.org/files/ENCFF013XNB/@@download/ENCFF013XNB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/69f2c445-26fb-4307-ad90-a3c50e9a90a7/ENCFF013XNB.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF445NMA bam bam alignments dm3 ENCSR462RAG Control ChIP-seq /fly-donors/ENCDO584KXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36957/'], '@type': ['Target', 'Item'], 'name': 'Lhr-dmelanogaster', 'label': 'Lhr', '@id': '/targets/Lhr-dmelanogaster/', 'title': 'Lhr (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0f4c0ae1-34fe-4b1d-ac9b-23bff041056a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF013XNB/ 1219148244 Kevin White, UChicago a4776ef98e811cb5a4665e735504c096 https://www.encodeproject.org/files/ENCFF445NMA/@@download/ENCFF445NMA.bam released s3://encode-public/2017/09/12/92f480e2-bcf8-4e2d-8a1b-9a0b208169df/ENCFF445NMA.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF484TOA bam bam alignments dm6 ENCSR462RAG Control ChIP-seq /fly-donors/ENCDO584KXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36957/'], '@type': ['Target', 'Item'], 'name': 'Lhr-dmelanogaster', 'label': 'Lhr', '@id': '/targets/Lhr-dmelanogaster/', 'title': 'Lhr (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0f4c0ae1-34fe-4b1d-ac9b-23bff041056a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF013XNB/ 1209899587 Kevin White, UChicago e4c303ce43193bc118f9d25c275adcdd https://www.encodeproject.org/files/ENCFF484TOA/@@download/ENCFF484TOA.bam released s3://encode-public/2017/09/13/fde897e0-68b0-48c9-850a-422f7ecb4a19/ENCFF484TOA.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF505CXI bigWig bigWig signal of unique reads dm3 ENCSR462RAG Control ChIP-seq /fly-donors/ENCDO584KXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36957/'], '@type': ['Target', 'Item'], 'name': 'Lhr-dmelanogaster', 'label': 'Lhr', '@id': '/targets/Lhr-dmelanogaster/', 'title': 'Lhr (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0f4c0ae1-34fe-4b1d-ac9b-23bff041056a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF445NMA/ 15494411 Kevin White, UChicago 46135da491fab5d83c90dafed4194dcd https://www.encodeproject.org/files/ENCFF505CXI/@@download/ENCFF505CXI.bigWig released s3://encode-public/2017/09/13/9b23298d-7e84-4a17-9b1d-6abbc58b6026/ENCFF505CXI.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF472UJG bigWig bigWig read-depth normalized signal dm3 ENCSR462RAG Control ChIP-seq /fly-donors/ENCDO584KXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36957/'], '@type': ['Target', 'Item'], 'name': 'Lhr-dmelanogaster', 'label': 'Lhr', '@id': '/targets/Lhr-dmelanogaster/', 'title': 'Lhr (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0f4c0ae1-34fe-4b1d-ac9b-23bff041056a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF445NMA/ 15506196 Kevin White, UChicago 12a4819e4fa6b494ffcc6e7969eb989f https://www.encodeproject.org/files/ENCFF472UJG/@@download/ENCFF472UJG.bigWig released s3://encode-public/2017/09/13/bf86af5b-6737-4797-9226-0e67ab949879/ENCFF472UJG.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF339JNN bigWig bigWig read-depth normalized signal dm6 ENCSR462RAG Control ChIP-seq /fly-donors/ENCDO584KXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36957/'], '@type': ['Target', 'Item'], 'name': 'Lhr-dmelanogaster', 'label': 'Lhr', '@id': '/targets/Lhr-dmelanogaster/', 'title': 'Lhr (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0f4c0ae1-34fe-4b1d-ac9b-23bff041056a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF484TOA/ 17731974 Kevin White, UChicago cfc0f16dcd1a3c2d152222cbc7983a8b https://www.encodeproject.org/files/ENCFF339JNN/@@download/ENCFF339JNN.bigWig released s3://encode-public/2017/09/14/1bf12e00-bc2c-46e4-95cb-ca7105f89f4b/ENCFF339JNN.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF331CRJ bigWig bigWig signal of unique reads dm6 ENCSR462RAG Control ChIP-seq /fly-donors/ENCDO584KXW/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/36957/'], '@type': ['Target', 'Item'], 'name': 'Lhr-dmelanogaster', 'label': 'Lhr', '@id': '/targets/Lhr-dmelanogaster/', 'title': 'Lhr (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': '0f4c0ae1-34fe-4b1d-ac9b-23bff041056a', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF484TOA/ 17700321 Kevin White, UChicago 18d77d5ea64bf760ca71e1a3cbb11bc8 https://www.encodeproject.org/files/ENCFF331CRJ/@@download/ENCFF331CRJ.bigWig released s3://encode-public/2017/09/14/90f56f24-ee4b-46b0-9fa4-abf6adf531dd/ENCFF331CRJ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF066BID fastq fastq reads ENCSR318RVX Control ChIP-seq /worm-donors/ENCDO501DLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171679/'], '@type': ['Target', 'Item'], 'name': 'hmbx-1-celegans', 'label': 'hmbx-1', '@id': '/targets/hmbx-1-celegans/', 'title': 'hmbx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a3589930-0551-4ef1-a5ee-b3ce21498aa7', 'status': 'released'} ce11 I 966777 999490 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 single-ended 1589562642 Kevin White, UChicago e2fb156246ca06c2ca4de6a16ffcd911 https://www.encodeproject.org/files/ENCFF066BID/@@download/ENCFF066BID.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/04/f97b30e2-f8f9-4432-a9e5-7a643f9aa6dd/ENCFF066BID.fastq.gz missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF076XZJ bam bam alignments ce10 ENCSR318RVX Control ChIP-seq /worm-donors/ENCDO501DLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171679/'], '@type': ['Target', 'Item'], 'name': 'hmbx-1-celegans', 'label': 'hmbx-1', '@id': '/targets/hmbx-1-celegans/', 'title': 'hmbx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a3589930-0551-4ef1-a5ee-b3ce21498aa7', 'status': 'released'} ce11 I 966777 999490 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF066BID/, /files/ENCFF987UMF/ 2099316217 Kevin White, UChicago 4603dbd80d29a78285cd7d37793508df https://www.encodeproject.org/files/ENCFF076XZJ/@@download/ENCFF076XZJ.bam released s3://encode-public/2016/10/04/ffa91240-1c6e-4e53-819d-e90106fb8b86/ENCFF076XZJ.bam Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF752DKQ bam bam alignments ce11 ENCSR318RVX Control ChIP-seq /worm-donors/ENCDO501DLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171679/'], '@type': ['Target', 'Item'], 'name': 'hmbx-1-celegans', 'label': 'hmbx-1', '@id': '/targets/hmbx-1-celegans/', 'title': 'hmbx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a3589930-0551-4ef1-a5ee-b3ce21498aa7', 'status': 'released'} ce11 I 966777 999490 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 50 /files/ENCFF066BID/, /files/ENCFF586MOL/ 2101089560 Kevin White, UChicago 997c383917bfa95b49d87b4ebd1c2d0f https://www.encodeproject.org/files/ENCFF752DKQ/@@download/ENCFF752DKQ.bam released s3://encode-public/2016/10/05/06d70c04-9114-4274-b4d2-68c8eae939da/ENCFF752DKQ.bam Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF869ZXL bigWig bigWig signal of unique reads ce10 ENCSR318RVX Control ChIP-seq /worm-donors/ENCDO501DLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171679/'], '@type': ['Target', 'Item'], 'name': 'hmbx-1-celegans', 'label': 'hmbx-1', '@id': '/targets/hmbx-1-celegans/', 'title': 'hmbx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a3589930-0551-4ef1-a5ee-b3ce21498aa7', 'status': 'released'} ce11 I 966777 999490 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF076XZJ/ 9964671 Kevin White, UChicago d5d21fa7896443f3d98b84b0ee75eaa1 https://www.encodeproject.org/files/ENCFF869ZXL/@@download/ENCFF869ZXL.bigWig released s3://encode-public/2016/10/06/6ff2f7a3-a890-4f8d-ab52-0eedc4a9feaf/ENCFF869ZXL.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF894SJU bigWig bigWig read-depth normalized signal ce10 ENCSR318RVX Control ChIP-seq /worm-donors/ENCDO501DLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171679/'], '@type': ['Target', 'Item'], 'name': 'hmbx-1-celegans', 'label': 'hmbx-1', '@id': '/targets/hmbx-1-celegans/', 'title': 'hmbx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a3589930-0551-4ef1-a5ee-b3ce21498aa7', 'status': 'released'} ce11 I 966777 999490 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF076XZJ/ 10028842 Kevin White, UChicago 685ee995e36e3654239f0f034e185a8d https://www.encodeproject.org/files/ENCFF894SJU/@@download/ENCFF894SJU.bigWig released s3://encode-public/2016/10/06/04dc1965-be41-4ad2-adf1-a0f6769b73c0/ENCFF894SJU.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF760LPM bigWig bigWig signal of unique reads ce11 ENCSR318RVX Control ChIP-seq /worm-donors/ENCDO501DLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171679/'], '@type': ['Target', 'Item'], 'name': 'hmbx-1-celegans', 'label': 'hmbx-1', '@id': '/targets/hmbx-1-celegans/', 'title': 'hmbx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a3589930-0551-4ef1-a5ee-b3ce21498aa7', 'status': 'released'} ce11 I 966777 999490 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF752DKQ/ 9964668 Kevin White, UChicago ec93f403378939e5782ac14185f02f55 https://www.encodeproject.org/files/ENCFF760LPM/@@download/ENCFF760LPM.bigWig released s3://encode-public/2016/10/06/655b23f6-f135-4979-b406-9a7876c4daf6/ENCFF760LPM.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF381RBG bigWig bigWig read-depth normalized signal ce11 ENCSR318RVX Control ChIP-seq /worm-donors/ENCDO501DLP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/171679/'], '@type': ['Target', 'Item'], 'name': 'hmbx-1-celegans', 'label': 'hmbx-1', '@id': '/targets/hmbx-1-celegans/', 'title': 'hmbx-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a3589930-0551-4ef1-a5ee-b3ce21498aa7', 'status': 'released'} ce11 I 966777 999490 DNA 2016-10-27 modERN sonication (generic microtip) 1 1_1 /files/ENCFF752DKQ/ 10028842 Kevin White, UChicago cbcc0d1ca4c433c03009e4f5655b834f https://www.encodeproject.org/files/ENCFF381RBG/@@download/ENCFF381RBG.bigWig released s3://encode-public/2016/10/06/8264537e-7c53-463a-8a79-5a4fe60dd522/ENCFF381RBG.bigWig Lab custom ce11 released missing compliant biosample characterization, missing external identifiers, missing genetic modification characterization ENCFF991IKY bam bam unfiltered alignments hg19 ENCSR621CSR Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF977SGP/ 1619694534 ENCODE Processing Pipeline 7f2ed01ecc1b8100ea536576a33d54cb https://www.encodeproject.org/files/ENCFF991IKY/@@download/ENCFF991IKY.bam released s3://encode-public/2018/02/22/8568dee2-57eb-4b98-b071-96a2eeef3c8a/ENCFF991IKY.bam ENCODE3 hg19 archived ENCFF977SGP fastq fastq reads ENCSR621CSR Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 single-ended 1441415173 Richard Myers, HAIB 6f00586a57f796397cef4dfcc469059a SRA:SRR5339032 https://www.encodeproject.org/files/ENCFF977SGP/@@download/ENCFF977SGP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/01/13/4f0dfe58-7c44-4ab5-bd40-d02149a3ee4a/ENCFF977SGP.fastq.gz ENCFF235CCD bam bam alignments hg19 ENCSR621CSR Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF807MUK/, /files/ENCFF977SGP/ 1210139907 ENCODE Processing Pipeline b862857689425d3c208be67ec9562403 https://www.encodeproject.org/files/ENCFF235CCD/@@download/ENCFF235CCD.bam released s3://encode-public/2016/01/15/87e07c3b-583f-4535-82f8-a71ee083bdef/ENCFF235CCD.bam ENCODE3 hg19 archived ENCFF448TFZ bam bam unfiltered alignments GRCh38 ENCSR621CSR Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF977SGP/ 1627821604 ENCODE Processing Pipeline dc6763fc0ff160319247eecac0735f55 https://www.encodeproject.org/files/ENCFF448TFZ/@@download/ENCFF448TFZ.bam released s3://encode-public/2016/05/06/fba1d462-502f-4e30-98d4-cda849fe9826/ENCFF448TFZ.bam ENCODE3 GRCh38 archived ENCFF200YPH bam bam alignments GRCh38 ENCSR621CSR Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF643CGH/, /files/ENCFF977SGP/ 1210475881 ENCODE Processing Pipeline 386a9c22a644673187af8b7938fb8af5 https://www.encodeproject.org/files/ENCFF200YPH/@@download/ENCFF200YPH.bam released s3://encode-public/2016/05/06/b55c10b9-c747-4fbd-8f25-1f8c9ea52ed9/ENCFF200YPH.bam ENCODE3 GRCh38 archived ENCFF426QVA bam bam unfiltered alignments GRCh38 ENCSR621CSR Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF977SGP/ 1617807210 ENCODE Processing Pipeline 99145e48490696e70d47306c058a5d41 https://www.encodeproject.org/files/ENCFF426QVA/@@download/ENCFF426QVA.bam released s3://encode-public/2020/06/06/6e436b5e-0685-4a72-8ead-16c30b1ee801/ENCFF426QVA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF923AJD bam bam alignments GRCh38 ENCSR621CSR Control ChIP-seq /human-donors/ENCDO060AAA/ UBERON:0002107 liver tissue Homo sapiens DNA 2016-01-29 ENCODE see document 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF977SGP/ 1279298779 ENCODE Processing Pipeline 6ed34adaf6034587ccb7f3e554331cce https://www.encodeproject.org/files/ENCFF923AJD/@@download/ENCFF923AJD.bam released s3://encode-public/2020/06/06/ebb7c40b-a354-438e-83bd-463b3783099d/ENCFF923AJD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF447WPJ fastq fastq reads ENCSR958BKG Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 5195157416 Roderic Guigo, CRG 187a600a4dffcb2bf792be778a0da2c9 https://www.encodeproject.org/files/ENCFF447WPJ/@@download/ENCFF447WPJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/ba286080-94bb-40e4-aad4-59d09105a20d/ENCFF447WPJ.fastq.gz ENCFF497NTW fastq fastq reads ENCSR958BKG Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 3512992463 Roderic Guigo, CRG e4ddefa6dfb8ca0ac4f753e9b1562186 https://www.encodeproject.org/files/ENCFF497NTW/@@download/ENCFF497NTW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/3d300294-bd76-4a7c-91cd-fc3f2cfe4e80/ENCFF497NTW.fastq.gz ENCFF300TDI bam bam alignments GRCh38 ENCSR958BKG Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF497NTW/ 3903144119 Roderic Guigo, CRG 0bd8950070e0aa6d36701fbf9578c7ae https://www.encodeproject.org/files/ENCFF300TDI/@@download/ENCFF300TDI.bam released s3://encode-public/2022/01/27/edcd7ae7-90b3-49f1-9fdf-a85130410438/ENCFF300TDI.bam Lab custom GRCh38 released ENCFF499PKK bam bam alignments GRCh38 ENCSR958BKG Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF447WPJ/ 5050397285 Roderic Guigo, CRG 3f24ed87f8599e0e528cb46e025eb296 https://www.encodeproject.org/files/ENCFF499PKK/@@download/ENCFF499PKK.bam released s3://encode-public/2022/01/27/2f77ef76-defb-483e-8bb9-d3173a360ea7/ENCFF499PKK.bam Lab custom GRCh38 released ENCFF665QOC fastq fastq reads ENCSR978XYH Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 4988724969 Roderic Guigo, CRG c175b0bb02b82df5c0c217d577cbab7c https://www.encodeproject.org/files/ENCFF665QOC/@@download/ENCFF665QOC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/0757a402-d956-4c47-b0fa-a556e5bd7355/ENCFF665QOC.fastq.gz ENCFF360GQI fastq fastq reads ENCSR978XYH Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4645435125 Roderic Guigo, CRG bc6d47a60088e4383e00652d2c49137d https://www.encodeproject.org/files/ENCFF360GQI/@@download/ENCFF360GQI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/536abb8e-30e1-4ba5-8958-f9dcf92b9035/ENCFF360GQI.fastq.gz ENCFF898JGL bam bam alignments GRCh38 ENCSR978XYH Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF360GQI/ 4974143549 Roderic Guigo, CRG 05eb3a0c9552997e50fb593f0411a0fd https://www.encodeproject.org/files/ENCFF898JGL/@@download/ENCFF898JGL.bam released s3://encode-public/2022/01/27/0cba2c35-ac32-4f54-827a-40f75d8ec23a/ENCFF898JGL.bam Lab custom GRCh38 released ENCFF220CYU bam bam alignments GRCh38 ENCSR978XYH Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF665QOC/ 4975065214 Roderic Guigo, CRG 3a7bb9a761383222d40c9cc47fbd7e89 https://www.encodeproject.org/files/ENCFF220CYU/@@download/ENCFF220CYU.bam released s3://encode-public/2022/01/27/bf306af4-7130-4866-8b7f-519a71091c4b/ENCFF220CYU.bam Lab custom GRCh38 released ENCFF759ADR fastq fastq reads ENCSR691LGL Control ChIP-seq /fly-donors/ENCDO845YBP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35813/'], '@type': ['Target', 'Item'], 'name': 'pdm3-dmelanogaster', 'label': 'pdm3', '@id': '/targets/pdm3-dmelanogaster/', 'title': 'pdm3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8b973a1-b8e0-4ebe-bab9-622cbd2a000b', 'status': 'released'} dm3 2R 4213953 4312945 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 644155635 Kevin White, UChicago e40ef561f744fc8b765c60b56f2caf81 https://www.encodeproject.org/files/ENCFF759ADR/@@download/ENCFF759ADR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/94b26c41-95eb-4df1-bb63-3ce447f74fea/ENCFF759ADR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF106WPJ bam bam alignments dm3 ENCSR691LGL Control ChIP-seq /fly-donors/ENCDO845YBP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35813/'], '@type': ['Target', 'Item'], 'name': 'pdm3-dmelanogaster', 'label': 'pdm3', '@id': '/targets/pdm3-dmelanogaster/', 'title': 'pdm3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8b973a1-b8e0-4ebe-bab9-622cbd2a000b', 'status': 'released'} dm3 2R 4213953 4312945 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF759ADR/ 931357714 Kevin White, UChicago 5cffb7e09f2331830bb6f92ad009d687 https://www.encodeproject.org/files/ENCFF106WPJ/@@download/ENCFF106WPJ.bam released s3://encode-public/2015/08/03/eae82106-974b-4eac-96ba-ca046664e871/ENCFF106WPJ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF956AKF bigWig bigWig read-depth normalized signal dm3 ENCSR691LGL Control ChIP-seq /fly-donors/ENCDO845YBP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35813/'], '@type': ['Target', 'Item'], 'name': 'pdm3-dmelanogaster', 'label': 'pdm3', '@id': '/targets/pdm3-dmelanogaster/', 'title': 'pdm3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8b973a1-b8e0-4ebe-bab9-622cbd2a000b', 'status': 'released'} dm3 2R 4213953 4312945 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF106WPJ/ 15178914 Kevin White, UChicago 171445d9b53b55620d014d8b7e0ce6a1 https://www.encodeproject.org/files/ENCFF956AKF/@@download/ENCFF956AKF.bigWig released s3://encode-public/2015/10/05/f3b3a660-599c-42aa-bc70-cffc9b529bfa/ENCFF956AKF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF063LPS bigWig bigWig signal of unique reads dm3 ENCSR691LGL Control ChIP-seq /fly-donors/ENCDO845YBP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35813/'], '@type': ['Target', 'Item'], 'name': 'pdm3-dmelanogaster', 'label': 'pdm3', '@id': '/targets/pdm3-dmelanogaster/', 'title': 'pdm3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8b973a1-b8e0-4ebe-bab9-622cbd2a000b', 'status': 'released'} dm3 2R 4213953 4312945 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF106WPJ/ 15177056 Kevin White, UChicago e0782c74fc84f7cc9be713f3d5aff702 https://www.encodeproject.org/files/ENCFF063LPS/@@download/ENCFF063LPS.bigWig released s3://encode-public/2015/10/05/8bba7d71-fe62-4252-8f29-6be0848d5a11/ENCFF063LPS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF014KXZ bam bam alignments dm6 ENCSR691LGL Control ChIP-seq /fly-donors/ENCDO845YBP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35813/'], '@type': ['Target', 'Item'], 'name': 'pdm3-dmelanogaster', 'label': 'pdm3', '@id': '/targets/pdm3-dmelanogaster/', 'title': 'pdm3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8b973a1-b8e0-4ebe-bab9-622cbd2a000b', 'status': 'released'} dm3 2R 4213953 4312945 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF759ADR/ 929197234 Kevin White, UChicago 60d982a4c9e49d3a5491defa7b310f46 https://www.encodeproject.org/files/ENCFF014KXZ/@@download/ENCFF014KXZ.bam released s3://encode-public/2016/04/22/4350672a-d8f5-405f-bdb2-f3415de18448/ENCFF014KXZ.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF270MPZ bigWig bigWig read-depth normalized signal dm6 ENCSR691LGL Control ChIP-seq /fly-donors/ENCDO845YBP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35813/'], '@type': ['Target', 'Item'], 'name': 'pdm3-dmelanogaster', 'label': 'pdm3', '@id': '/targets/pdm3-dmelanogaster/', 'title': 'pdm3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8b973a1-b8e0-4ebe-bab9-622cbd2a000b', 'status': 'released'} dm3 2R 4213953 4312945 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF014KXZ/ 17270429 Kevin White, UChicago e4ced0d9ac65098198d5823ab3742cec https://www.encodeproject.org/files/ENCFF270MPZ/@@download/ENCFF270MPZ.bigWig released s3://encode-public/2016/06/20/9fcc05c4-d207-4856-9eb0-e02c19da1832/ENCFF270MPZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF579VPY bigWig bigWig signal of unique reads dm6 ENCSR691LGL Control ChIP-seq /fly-donors/ENCDO845YBP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/35813/'], '@type': ['Target', 'Item'], 'name': 'pdm3-dmelanogaster', 'label': 'pdm3', '@id': '/targets/pdm3-dmelanogaster/', 'title': 'pdm3 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8b973a1-b8e0-4ebe-bab9-622cbd2a000b', 'status': 'released'} dm3 2R 4213953 4312945 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF014KXZ/ 17272491 Kevin White, UChicago 12af4f3ac85cfccb630e943817e7ae61 https://www.encodeproject.org/files/ENCFF579VPY/@@download/ENCFF579VPY.bigWig released s3://encode-public/2016/06/20/83af4e4f-3629-4b3a-ba14-a45872e50baa/ENCFF579VPY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF955PGV fastq fastq reads ENCSR249WKC Control ChIP-seq /fly-donors/ENCDO510QER/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42757/'], '@type': ['Target', 'Item'], 'name': 'pnt-dmelanogaster', 'label': 'pnt', '@id': '/targets/pnt-dmelanogaster/', 'title': 'pnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4116aef-9967-43f7-92e9-094557ed43ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 523088235 Kevin White, UChicago 9063d5aa0f6c0f5bc159b3aa4673bed5 https://www.encodeproject.org/files/ENCFF955PGV/@@download/ENCFF955PGV.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/45b2b252-95ef-467e-8daa-0a78b6b69ef5/ENCFF955PGV.fastq.gz missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF679HNE bam bam alignments dm3 ENCSR249WKC Control ChIP-seq /fly-donors/ENCDO510QER/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42757/'], '@type': ['Target', 'Item'], 'name': 'pnt-dmelanogaster', 'label': 'pnt', '@id': '/targets/pnt-dmelanogaster/', 'title': 'pnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4116aef-9967-43f7-92e9-094557ed43ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF059UHX/, /files/ENCFF955PGV/ 759395546 Kevin White, UChicago 2ab601ee1409385087097b3800df9e5a https://www.encodeproject.org/files/ENCFF679HNE/@@download/ENCFF679HNE.bam released s3://encode-public/2015/10/22/f23ffc96-f94b-4bf5-b402-19d89b903c82/ENCFF679HNE.bam Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF794OQP bigWig bigWig signal of unique reads dm3 ENCSR249WKC Control ChIP-seq /fly-donors/ENCDO510QER/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42757/'], '@type': ['Target', 'Item'], 'name': 'pnt-dmelanogaster', 'label': 'pnt', '@id': '/targets/pnt-dmelanogaster/', 'title': 'pnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4116aef-9967-43f7-92e9-094557ed43ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679HNE/ 15362043 Kevin White, UChicago ce49a32e655df90cabddb89fef4ca74e https://www.encodeproject.org/files/ENCFF794OQP/@@download/ENCFF794OQP.bigWig released s3://encode-public/2015/10/22/eefb0abb-4692-40b7-8dab-7c67e7781dbb/ENCFF794OQP.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF024BII bigWig bigWig read-depth normalized signal dm3 ENCSR249WKC Control ChIP-seq /fly-donors/ENCDO510QER/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42757/'], '@type': ['Target', 'Item'], 'name': 'pnt-dmelanogaster', 'label': 'pnt', '@id': '/targets/pnt-dmelanogaster/', 'title': 'pnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4116aef-9967-43f7-92e9-094557ed43ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF679HNE/ 15393992 Kevin White, UChicago c48aeda54f7a14cc1ad3b56b584326b2 https://www.encodeproject.org/files/ENCFF024BII/@@download/ENCFF024BII.bigWig released s3://encode-public/2015/10/22/a8f4796c-80f7-4b55-b70e-022f7a91074b/ENCFF024BII.bigWig Lab custom dm3 archived missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF206ALM bam bam alignments dm6 ENCSR249WKC Control ChIP-seq /fly-donors/ENCDO510QER/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42757/'], '@type': ['Target', 'Item'], 'name': 'pnt-dmelanogaster', 'label': 'pnt', '@id': '/targets/pnt-dmelanogaster/', 'title': 'pnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4116aef-9967-43f7-92e9-094557ed43ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 51 /files/ENCFF479RCH/, /files/ENCFF955PGV/ 757019578 Kevin White, UChicago 5b41a5f355265317872a2b878a02d69c https://www.encodeproject.org/files/ENCFF206ALM/@@download/ENCFF206ALM.bam released s3://encode-public/2016/04/22/cac98729-fbd0-427a-a503-64aa5a42ee5e/ENCFF206ALM.bam Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF068NRN bigWig bigWig signal of unique reads dm6 ENCSR249WKC Control ChIP-seq /fly-donors/ENCDO510QER/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42757/'], '@type': ['Target', 'Item'], 'name': 'pnt-dmelanogaster', 'label': 'pnt', '@id': '/targets/pnt-dmelanogaster/', 'title': 'pnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4116aef-9967-43f7-92e9-094557ed43ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF206ALM/ 17412905 Kevin White, UChicago e74a1ee96e0f22c379790d0d402fc350 https://www.encodeproject.org/files/ENCFF068NRN/@@download/ENCFF068NRN.bigWig released s3://encode-public/2016/06/20/737c4d17-ccc5-4ea5-9d4a-42c03b47d1b5/ENCFF068NRN.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF846LTP bigWig bigWig read-depth normalized signal dm6 ENCSR249WKC Control ChIP-seq /fly-donors/ENCDO510QER/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42757/'], '@type': ['Target', 'Item'], 'name': 'pnt-dmelanogaster', 'label': 'pnt', '@id': '/targets/pnt-dmelanogaster/', 'title': 'pnt (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'b4116aef-9967-43f7-92e9-094557ed43ba', 'status': 'released'} DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF206ALM/ 17449625 Kevin White, UChicago 5671d4f574e4d1b91fe19ccb2f934196 https://www.encodeproject.org/files/ENCFF846LTP/@@download/ENCFF846LTP.bigWig released s3://encode-public/2016/06/20/252d0652-1c9f-4f39-a692-70068cb90166/ENCFF846LTP.bigWig Lab custom dm6 released missing external identifiers, missing genetic modification characterization, missing biosample characterization ENCFF128QWX tagAlign tagAlign alignments hg19 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF416TNH/ 494332603 Anshul Kundaje, Stanford 821fc09faff7b68e2c1d69628c9df754 https://www.encodeproject.org/files/ENCFF128QWX/@@download/ENCFF128QWX.tagAlign.gz archived s3://encode-public/2016/03/30/b10902f2-7b52-425c-93b9-bca041110717/ENCFF128QWX.tagAlign.gz Lab custom hg19 archived low read length, inconsistent platforms ENCFF416TNH fastq fastq reads ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1566509356 Zhiping Weng, UMass cb961c3796d39673bec36e7d3b6416dd SRA:SRR1068374 https://www.encodeproject.org/files/ENCFF416TNH/@@download/ENCFF416TNH.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/45eaed54-f81d-43bf-867f-3278283bda78/ENCFF416TNH.fastq.gz low read length, inconsistent platforms ENCFF252GLX bam bam unfiltered alignments hg19 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF416TNH/ 1826104222 ENCODE Processing Pipeline 97258c276b36e818372caba91cff91b9 https://www.encodeproject.org/files/ENCFF252GLX/@@download/ENCFF252GLX.bam released s3://encode-public/2016/12/19/ab509649-598e-4eb0-bcb5-bc434a63262a/ENCFF252GLX.bam ENCODE3 hg19 archived low read length, inconsistent platforms ENCFF725EHT bam bam unfiltered alignments GRCh38 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF416TNH/ 1840394216 ENCODE Processing Pipeline 1b2a1b5dd0cf19846a2f6e01d2b7a9eb https://www.encodeproject.org/files/ENCFF725EHT/@@download/ENCFF725EHT.bam released s3://encode-public/2016/12/19/a872b35b-ac56-4fb9-988c-8181f420f864/ENCFF725EHT.bam ENCODE3 GRCh38 archived low read length, inconsistent platforms ENCFF124CTL bam bam alignments hg19 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF416TNH/ 1315571004 ENCODE Processing Pipeline 8e278b850ff50553327b8d5dfd8fd568 https://www.encodeproject.org/files/ENCFF124CTL/@@download/ENCFF124CTL.bam released s3://encode-public/2016/12/19/b4027fff-8824-4e04-b4d6-809a6229a6e4/ENCFF124CTL.bam ENCODE3 hg19 archived low read length, inconsistent platforms ENCFF977CRV bam bam alignments GRCh38 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF416TNH/ 1315380224 ENCODE Processing Pipeline 0d9c4b23d661a799ec8674134dc94bbe https://www.encodeproject.org/files/ENCFF977CRV/@@download/ENCFF977CRV.bam released s3://encode-public/2016/12/19/cbb035f7-7f14-438a-8d3c-46a672745a6e/ENCFF977CRV.bam ENCODE3 GRCh38 archived low read length, inconsistent platforms ENCFF663QXJ tagAlign tagAlign alignments hg19 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF893FAW/, /files/ENCFF763LON/, /files/ENCFF990QWI/, /files/ENCFF261YBL/, /files/ENCFF645YSL/ 220422099 Anshul Kundaje, Stanford 04b18858bea2663069e043693ecff427 https://www.encodeproject.org/files/ENCFF663QXJ/@@download/ENCFF663QXJ.tagAlign.gz archived s3://encode-public/2016/05/02/30cf4e5b-b040-484f-9c61-98b7a8cf04ee/ENCFF663QXJ.tagAlign.gz Lab custom hg19 archived low read length, inconsistent platforms ENCFF179ZHF bam bam redacted alignments GRCh38 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF990QWI/, /files/ENCFF261YBL/, /files/ENCFF893FAW/, /files/ENCFF763LON/, /files/ENCFF645YSL/ 1090621854 ENCODE Processing Pipeline 6e09b68d6c2c1f6512b96541ae901f62 https://www.encodeproject.org/files/ENCFF179ZHF/@@download/ENCFF179ZHF.bam released s3://encode-public/2018/01/31/0c266e6b-654f-4195-8cc1-91b76480475c/ENCFF179ZHF.bam ENCODE3 GRCh38 archived low read length, inconsistent platforms ENCFF828TEP bam bam redacted unfiltered alignments GRCh38 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF990QWI/, /files/ENCFF261YBL/, /files/ENCFF893FAW/, /files/ENCFF763LON/, /files/ENCFF645YSL/ 1573861418 ENCODE Processing Pipeline cc052101c44c7e830c25a7ded69100ad https://www.encodeproject.org/files/ENCFF828TEP/@@download/ENCFF828TEP.bam released s3://encode-public/2018/01/31/910a87f2-636b-47bb-8b1b-5cc47cbb902d/ENCFF828TEP.bam ENCODE3 GRCh38 archived low read length, inconsistent platforms ENCFF886DUJ bam bam redacted alignments hg19 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF990QWI/, /files/ENCFF261YBL/, /files/ENCFF893FAW/, /files/ENCFF763LON/, /files/ENCFF807MUK/, /files/ENCFF645YSL/ 1090551367 ENCODE Processing Pipeline 79385c9cb93614f48fc9089d1655b631 https://www.encodeproject.org/files/ENCFF886DUJ/@@download/ENCFF886DUJ.bam released s3://encode-public/2018/01/31/c6f016f6-9bdf-428e-9c05-9ec5bee3f6bf/ENCFF886DUJ.bam ENCODE3 hg19 archived low read length, inconsistent platforms ENCFF362AZH bam bam redacted unfiltered alignments hg19 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF990QWI/, /files/ENCFF261YBL/, /files/ENCFF893FAW/, /files/ENCFF763LON/, /files/ENCFF807MUK/, /files/ENCFF645YSL/ 1555510334 ENCODE Processing Pipeline 4c124080e5e82f3b18467da31ba59709 https://www.encodeproject.org/files/ENCFF362AZH/@@download/ENCFF362AZH.bam released s3://encode-public/2018/01/31/a8fb3367-e8d4-4328-be86-66db2f87b13f/ENCFF362AZH.bam ENCODE3 hg19 archived low read length, inconsistent platforms ENCFF126JMA bam bam redacted alignments GRCh38 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF416TNH/, /files/ENCFF110MCL/ 1418580725 ENCODE Processing Pipeline d98691db1b528b2c7fcaa957103b20ec https://www.encodeproject.org/files/ENCFF126JMA/@@download/ENCFF126JMA.bam released s3://encode-public/2021/01/28/4cad7ed7-1eb3-44e4-98ae-d7584177383b/ENCFF126JMA.bam ENCODE4 v1.7.0 GRCh38 released low read length, inconsistent platforms ENCFF046IKR bam bam redacted alignments GRCh38 ENCSR714CKG Control ChIP-seq /human-donors/ENCDO412QUR/ CL:0001059 common myeloid progenitor, CD34-positive primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF990QWI/, /files/ENCFF110MCL/, /files/ENCFF645YSL/, /files/ENCFF261YBL/, /files/ENCFF763LON/, /files/ENCFF893FAW/ 3360099313 ENCODE Processing Pipeline 3a200419759da2085b27a5f526db5fa9 https://www.encodeproject.org/files/ENCFF046IKR/@@download/ENCFF046IKR.bam released s3://encode-public/2021/01/28/fa7b4fc8-e482-4ed9-b1a8-9c94a9746c75/ENCFF046IKR.bam ENCODE4 v1.7.0 GRCh38 released low read length, inconsistent platforms ENCFF668QOO tagAlign tagAlign alignments hg19 ENCSR921EEE Control ChIP-seq CL:0000134 mesenchymal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 245124062 Anshul Kundaje, Stanford 7f929fd0b09289b917745a9f22107164 https://www.encodeproject.org/files/ENCFF668QOO/@@download/ENCFF668QOO.tagAlign.gz archived s3://encode-public/2016/05/02/e36cc204-b7b6-49d0-b64d-b8183e0f0076/ENCFF668QOO.tagAlign.gz Lab custom hg19 released inconsistent ontology term ENCFF959WYX fastq fastq reads ENCSR788HFC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 104449756 Michael Snyder, Stanford ae173ccecf7f0ba1448b8b9a7e7f77a7 https://www.encodeproject.org/files/ENCFF959WYX/@@download/ENCFF959WYX.fastq.gz Illumina Genome Analyzer IIx archived s3://encode-public/2015/12/17/e0da7962-9c8e-4425-a89e-fc216f9275a2/ENCFF959WYX.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF777VXK fastq fastq reads ENCSR788HFC Control ChIP-seq /worm-donors/ENCDO148DCX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181368/'], '@type': ['Target', 'Item'], 'name': 'nfya-1-celegans', 'label': 'nfya-1', '@id': '/targets/nfya-1-celegans/', 'title': 'nfya-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'eb5cadc5-ad55-4993-b6f6-9963fba2fbbf', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 146215153 Kevin White, UChicago 4b3fa9c8f0e632851f22c0f1ab9fbc3b https://www.encodeproject.org/files/ENCFF777VXK/@@download/ENCFF777VXK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF610ZGU/, /files/ENCFF160UOP/ archived s3://encode-public/2016/10/25/2f473e5e-34b1-4b8b-ab3c-00d673662591/ENCFF777VXK.fastq.gz missing genetic modification characterization, lacking processed data, missing biosample characterization ENCFF877OXB tagAlign tagAlign alignments hg19 ENCSR330SVG Control ChIP-seq /human-donors/ENCDO159WAM/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF330UDL/ 123239132 Anshul Kundaje, Stanford 6921cdef5a260446fe883ce967a7374f https://www.encodeproject.org/files/ENCFF877OXB/@@download/ENCFF877OXB.tagAlign.gz archived s3://encode-public/2016/02/11/18eb6a53-b58c-4910-ad18-60ebd474bc7b/ENCFF877OXB.tagAlign.gz Lab custom hg19 archived low read depth, low read length ENCFF296VVK bam bam redacted unfiltered alignments GRCh38 ENCSR330SVG Control ChIP-seq /human-donors/ENCDO159WAM/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF330UDL/, /files/ENCFF643CGH/ 338228985 ENCODE Processing Pipeline 98ddf1fa39049dc425c088bd10a8d78c https://www.encodeproject.org/files/ENCFF296VVK/@@download/ENCFF296VVK.bam released s3://encode-public/2018/01/18/fd119acf-193f-4f02-92ae-5ef6c158abf6/ENCFF296VVK.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF491FTW bam bam redacted alignments GRCh38 ENCSR330SVG Control ChIP-seq /human-donors/ENCDO159WAM/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF330UDL/, /files/ENCFF643CGH/ 242897527 ENCODE Processing Pipeline eb91022e1280804890e73ee275d6f698 https://www.encodeproject.org/files/ENCFF491FTW/@@download/ENCFF491FTW.bam released s3://encode-public/2018/01/18/758ab079-3391-48c7-945d-ff390896df4d/ENCFF491FTW.bam ENCODE3 GRCh38 archived low read depth, low read length ENCFF719ITM bam bam redacted unfiltered alignments hg19 ENCSR330SVG Control ChIP-seq /human-donors/ENCDO159WAM/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF330UDL/, /files/ENCFF807MUK/ 335438893 ENCODE Processing Pipeline e2d66f24a9f10fa88ff35b20b52032be https://www.encodeproject.org/files/ENCFF719ITM/@@download/ENCFF719ITM.bam released s3://encode-public/2018/01/19/4d853dc8-3f57-4360-9680-a7af701ca573/ENCFF719ITM.bam ENCODE3 hg19 archived low read depth, low read length ENCFF749COZ bam bam redacted alignments hg19 ENCSR330SVG Control ChIP-seq /human-donors/ENCDO159WAM/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF330UDL/, /files/ENCFF807MUK/ 242933149 ENCODE Processing Pipeline 6ca1633d4095df509f62b3f6e55b1e46 https://www.encodeproject.org/files/ENCFF749COZ/@@download/ENCFF749COZ.bam released s3://encode-public/2018/01/19/e992b10b-ade4-4728-9639-ca4e93c5b5f3/ENCFF749COZ.bam ENCODE3 hg19 archived low read depth, low read length ENCFF165GHU bam bam redacted alignments GRCh38 ENCSR330SVG Control ChIP-seq /human-donors/ENCDO159WAM/ UBERON:0000317 colonic mucosa tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF330UDL/, /files/ENCFF110MCL/ 698778805 ENCODE Processing Pipeline ec0219b535fcbb3f9b43242e861b26aa https://www.encodeproject.org/files/ENCFF165GHU/@@download/ENCFF165GHU.bam released s3://encode-public/2021/01/27/8773c04e-bf30-4440-989d-39398e8f3f3a/ENCFF165GHU.bam ENCODE4 v1.7.0 GRCh38 released low read depth, low read length ENCFF765YLF fastq fastq reads ENCSR807ABQ Control ChIP-seq /fly-donors/ENCDO848KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40162/'], '@type': ['Target', 'Item'], 'name': 'cyc-dmelanogaster', 'label': 'cyc', '@id': '/targets/cyc-dmelanogaster/', 'title': 'cyc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8adc249-b904-486b-94fa-fe1f3fbce971', 'status': 'released'} dm3 3L 19790721 19812996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 602498554 Kevin White, UChicago 60af486c1fc1324c96c493c40ca0ce01 https://www.encodeproject.org/files/ENCFF765YLF/@@download/ENCFF765YLF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f222442c-d3d4-4569-a55b-c2254a402ecd/ENCFF765YLF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF896CZT bam bam alignments dm3 ENCSR807ABQ Control ChIP-seq /fly-donors/ENCDO848KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40162/'], '@type': ['Target', 'Item'], 'name': 'cyc-dmelanogaster', 'label': 'cyc', '@id': '/targets/cyc-dmelanogaster/', 'title': 'cyc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8adc249-b904-486b-94fa-fe1f3fbce971', 'status': 'released'} dm3 3L 19790721 19812996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF765YLF/ 879195946 Kevin White, UChicago 977dba328c935ed8697df1f2fb790b4f https://www.encodeproject.org/files/ENCFF896CZT/@@download/ENCFF896CZT.bam released s3://encode-public/2015/08/03/7f25eea7-9051-49a4-af54-bdcd2ffafc39/ENCFF896CZT.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF248RAF bigWig bigWig signal of unique reads dm3 ENCSR807ABQ Control ChIP-seq /fly-donors/ENCDO848KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40162/'], '@type': ['Target', 'Item'], 'name': 'cyc-dmelanogaster', 'label': 'cyc', '@id': '/targets/cyc-dmelanogaster/', 'title': 'cyc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8adc249-b904-486b-94fa-fe1f3fbce971', 'status': 'released'} dm3 3L 19790721 19812996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF896CZT/ 15250391 Kevin White, UChicago dd717336cdf7339e90573f301e8d15a8 https://www.encodeproject.org/files/ENCFF248RAF/@@download/ENCFF248RAF.bigWig released s3://encode-public/2015/10/05/68892d61-5e91-44be-bb64-a0dad04ceb6c/ENCFF248RAF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF532NNQ bigWig bigWig read-depth normalized signal dm3 ENCSR807ABQ Control ChIP-seq /fly-donors/ENCDO848KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40162/'], '@type': ['Target', 'Item'], 'name': 'cyc-dmelanogaster', 'label': 'cyc', '@id': '/targets/cyc-dmelanogaster/', 'title': 'cyc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8adc249-b904-486b-94fa-fe1f3fbce971', 'status': 'released'} dm3 3L 19790721 19812996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF896CZT/ 15261145 Kevin White, UChicago 5539dc6f00aff9e6847947599d692fee https://www.encodeproject.org/files/ENCFF532NNQ/@@download/ENCFF532NNQ.bigWig released s3://encode-public/2015/10/05/07a04ea4-30f5-4ed7-b8e2-643003b4a493/ENCFF532NNQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF093OFL bam bam alignments dm6 ENCSR807ABQ Control ChIP-seq /fly-donors/ENCDO848KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40162/'], '@type': ['Target', 'Item'], 'name': 'cyc-dmelanogaster', 'label': 'cyc', '@id': '/targets/cyc-dmelanogaster/', 'title': 'cyc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8adc249-b904-486b-94fa-fe1f3fbce971', 'status': 'released'} dm3 3L 19790721 19812996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF765YLF/ 877224254 Kevin White, UChicago 15f30c204b5323521bacc8ea71de5401 https://www.encodeproject.org/files/ENCFF093OFL/@@download/ENCFF093OFL.bam released s3://encode-public/2016/04/21/54925c4a-3cb7-491c-b781-1afa75de482e/ENCFF093OFL.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF743PMU bigWig bigWig signal of unique reads dm6 ENCSR807ABQ Control ChIP-seq /fly-donors/ENCDO848KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40162/'], '@type': ['Target', 'Item'], 'name': 'cyc-dmelanogaster', 'label': 'cyc', '@id': '/targets/cyc-dmelanogaster/', 'title': 'cyc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8adc249-b904-486b-94fa-fe1f3fbce971', 'status': 'released'} dm3 3L 19790721 19812996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093OFL/ 17333337 Kevin White, UChicago c128c34d8dac87220c14b986679e4e4c https://www.encodeproject.org/files/ENCFF743PMU/@@download/ENCFF743PMU.bigWig released s3://encode-public/2016/06/20/87fa7f3f-6a1f-4866-b6eb-aa5d9175ab5c/ENCFF743PMU.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF801CCH bigWig bigWig read-depth normalized signal dm6 ENCSR807ABQ Control ChIP-seq /fly-donors/ENCDO848KXI/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40162/'], '@type': ['Target', 'Item'], 'name': 'cyc-dmelanogaster', 'label': 'cyc', '@id': '/targets/cyc-dmelanogaster/', 'title': 'cyc (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f8adc249-b904-486b-94fa-fe1f3fbce971', 'status': 'released'} dm3 3L 19790721 19812996 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF093OFL/ 17345514 Kevin White, UChicago cba49bb4a721e29de3b6fab098bc36ee https://www.encodeproject.org/files/ENCFF801CCH/@@download/ENCFF801CCH.bigWig released s3://encode-public/2016/06/20/d2163446-7d57-40b3-9c2d-a54f8e1d7803/ENCFF801CCH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF705IAM fastq fastq reads ENCSR968XKG Control ChIP-seq /human-donors/ENCDO609ZOG/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 368482051 Bradley Bernstein, Broad d20e09a52e28059d2356e214919cd404 SRA:SRR16814144 https://www.encodeproject.org/files/ENCFF705IAM/@@download/ENCFF705IAM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/782ac21b-a68e-4dc0-9282-a441a34e768d/ENCFF705IAM.fastq.gz ENCFF752CMC fastq fastq reads ENCSR968XKG Control ChIP-seq /human-donors/ENCDO609ZOG/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 367795555 Bradley Bernstein, Broad 35aa02df1f869980fa5cb1e45da1ff60 SRA:SRR16814145 https://www.encodeproject.org/files/ENCFF752CMC/@@download/ENCFF752CMC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/ee6f091f-5332-4559-af08-bcc88d667f46/ENCFF752CMC.fastq.gz ENCFF412UUT fastq fastq reads ENCSR968XKG Control ChIP-seq /human-donors/ENCDO609ZOG/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 369231238 Bradley Bernstein, Broad 7b07c490762997999c08b2fac44e984c SRA:SRR16814146 https://www.encodeproject.org/files/ENCFF412UUT/@@download/ENCFF412UUT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/6753beb5-878c-4f18-9fc3-feb84e05d22b/ENCFF412UUT.fastq.gz ENCFF373HPM fastq fastq reads ENCSR968XKG Control ChIP-seq /human-donors/ENCDO609ZOG/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 383406213 Bradley Bernstein, Broad 68cee351b2ec670feb15d00e9bc59e16 SRA:SRR16814147 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archived low read length inconsistent ontology term ENCFF788UGK bam bam redacted unfiltered alignments hg19 ENCSR185URR Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF949KAI/, /files/ENCFF807MUK/ 672523908 ENCODE Processing Pipeline 13c58f1f7dfc93dbccec1b3ffa51480b https://www.encodeproject.org/files/ENCFF788UGK/@@download/ENCFF788UGK.bam released s3://encode-public/2018/01/26/49ed8ee9-9a9b-48c8-bea8-89c0097d9b56/ENCFF788UGK.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF535JES bam bam redacted unfiltered alignments hg19 ENCSR185URR Control ChIP-seq /human-donors/ENCDO608RNO/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF807MUK/, /files/ENCFF340IXP/ 602169108 ENCODE Processing Pipeline 47ed076cdbc58be4c0c5a410709d1448 https://www.encodeproject.org/files/ENCFF535JES/@@download/ENCFF535JES.bam released s3://encode-public/2018/01/26/bac17401-a3dc-4c5f-b8cc-419971d8046c/ENCFF535JES.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF547EMF bam bam redacted alignments hg19 ENCSR185URR Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF949KAI/, /files/ENCFF807MUK/ 464052489 ENCODE Processing Pipeline f82afdb09b914cca84c6d68dcfe9c2e9 https://www.encodeproject.org/files/ENCFF547EMF/@@download/ENCFF547EMF.bam released s3://encode-public/2018/01/26/3c0f74d7-9120-47bc-9e30-5e4bf731d3f6/ENCFF547EMF.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF674ISL bam bam redacted alignments hg19 ENCSR185URR Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF045EFV/ 495892262 ENCODE Processing Pipeline 8f3aefac105516b17c9ceec094c05371 https://www.encodeproject.org/files/ENCFF674ISL/@@download/ENCFF674ISL.bam released s3://encode-public/2018/01/26/2dab5b56-b01a-49e6-8f3e-f1f1c7d9e7ea/ENCFF674ISL.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF229AID bam bam redacted unfiltered alignments hg19 ENCSR185URR Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF045EFV/ 692149566 ENCODE Processing Pipeline 33eff48b9b1504ab54edbe97f64e72a5 https://www.encodeproject.org/files/ENCFF229AID/@@download/ENCFF229AID.bam released s3://encode-public/2018/01/26/473609ac-b5f6-496a-9c18-edcc353bb5c4/ENCFF229AID.bam ENCODE3 hg19 archived low read length inconsistent ontology term ENCFF739MWA bam bam redacted unfiltered alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF949KAI/, /files/ENCFF643CGH/ 679190069 ENCODE Processing Pipeline dd2d67df40bcdfa9060ae589c3740865 https://www.encodeproject.org/files/ENCFF739MWA/@@download/ENCFF739MWA.bam released s3://encode-public/2018/01/26/1572c011-18c1-4d06-a871-57599dfc11c7/ENCFF739MWA.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF220MYU bam bam redacted unfiltered alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO608RNO/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF340IXP/ 607784145 ENCODE Processing Pipeline 1324edc47e73b14522fd6a97b77172fa https://www.encodeproject.org/files/ENCFF220MYU/@@download/ENCFF220MYU.bam released s3://encode-public/2018/01/26/cf70c3d1-6206-4c3c-af88-18618ca6e395/ENCFF220MYU.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF999NFD bam bam redacted alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF949KAI/, /files/ENCFF643CGH/ 463992937 ENCODE Processing Pipeline a14e94e5019c37d5c048d4adabcc8be2 https://www.encodeproject.org/files/ENCFF999NFD/@@download/ENCFF999NFD.bam released s3://encode-public/2018/01/26/209e5fc2-8715-4a60-b0e3-74db647a84df/ENCFF999NFD.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF111ALY bam bam redacted alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO608RNO/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF643CGH/, /files/ENCFF340IXP/ 411928548 ENCODE Processing Pipeline 95a20dd892e693170f9ec2a5d07e805a https://www.encodeproject.org/files/ENCFF111ALY/@@download/ENCFF111ALY.bam released s3://encode-public/2018/01/26/5f5b3d83-33d0-4f2c-9911-abf7b083f79d/ENCFF111ALY.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF825QBT bam bam redacted unfiltered alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF045EFV/ 698941036 ENCODE Processing Pipeline 20b7f8e1b816a99a7ef919f05627e4bb https://www.encodeproject.org/files/ENCFF825QBT/@@download/ENCFF825QBT.bam released s3://encode-public/2018/01/26/05bc9e96-ba29-4088-b1c8-d1dc6226fd5e/ENCFF825QBT.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF525FVZ bam bam redacted alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF045EFV/ 495829442 ENCODE Processing Pipeline 7101c04eaf51962b7dec14b2bc195ce7 https://www.encodeproject.org/files/ENCFF525FVZ/@@download/ENCFF525FVZ.bam released s3://encode-public/2018/01/26/2e1a8f71-4d5d-4338-b723-28510a41fd05/ENCFF525FVZ.bam ENCODE3 GRCh38 archived low read length inconsistent ontology term ENCFF616MMJ bam bam redacted alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO608RNO/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 3 3_1 36 /files/ENCFF110MCL/, /files/ENCFF340IXP/ 1409059205 ENCODE Processing Pipeline 13fa6d55694943fbf53aac316d62b8ac https://www.encodeproject.org/files/ENCFF616MMJ/@@download/ENCFF616MMJ.bam released s3://encode-public/2021/01/27/7722b379-f727-4359-a7fb-4ea92f45c304/ENCFF616MMJ.bam ENCODE4 v1.7.0 GRCh38 released low read length inconsistent ontology term ENCFF761UPZ bam bam redacted alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO477HWZ/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF045EFV/ 1532288749 ENCODE Processing Pipeline 55a21deb33087bb58edf62f50bf409d0 https://www.encodeproject.org/files/ENCFF761UPZ/@@download/ENCFF761UPZ.bam released s3://encode-public/2021/01/27/725e0d23-6db4-45c5-99c8-d14dd27dc213/ENCFF761UPZ.bam ENCODE4 v1.7.0 GRCh38 released low read length inconsistent ontology term ENCFF052FTG bam bam redacted alignments GRCh38 ENCSR185URR Control ChIP-seq /human-donors/ENCDO535TMW/ CL:0000134 mesenchymal stem cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF949KAI/ 1474066141 ENCODE Processing Pipeline 3e45408249e9779df68447de4df4094b https://www.encodeproject.org/files/ENCFF052FTG/@@download/ENCFF052FTG.bam released s3://encode-public/2021/01/27/d53d24b5-8f76-4269-b583-b452883a06d6/ENCFF052FTG.bam ENCODE4 v1.7.0 GRCh38 released low read length inconsistent ontology term ENCFF782WHJ tagAlign tagAlign alignments hg19 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 /files/ENCFF029VZG/, /files/ENCFF588ZXC/, /files/ENCFF851CEK/, /files/ENCFF425MWD/ 104183132 Anshul Kundaje, Stanford 1687a4e920df0ce3210efe1cc99fd778 https://www.encodeproject.org/files/ENCFF782WHJ/@@download/ENCFF782WHJ.tagAlign.gz archived s3://encode-public/2016/03/30/3064676d-62ab-4f93-b501-f81905d19794/ENCFF782WHJ.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF425MWD fastq fastq reads ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 324808110 Zhiping Weng, UMass 108d233f0710c34d0b43dc32a157c5c0 SRA:SRR1067170 https://www.encodeproject.org/files/ENCFF425MWD/@@download/ENCFF425MWD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/a9182d96-3f57-4ebf-85e1-38eac62dc381/ENCFF425MWD.fastq.gz mild to moderate bottlenecking, low read length ENCFF851CEK fastq fastq reads ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 178836333 Zhiping Weng, UMass 9e6eee0727bdd95962867aebc76c3ffb SRA:SRR1067295 https://www.encodeproject.org/files/ENCFF851CEK/@@download/ENCFF851CEK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/4753d9f0-8f0e-4d2b-b4f2-5f217db9a67c/ENCFF851CEK.fastq.gz mild to moderate bottlenecking, low read length ENCFF588ZXC fastq fastq reads ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 317884900 Zhiping Weng, UMass a8b061f51d2fcf4245f2760f591ac930 SRA:SRR1067335 https://www.encodeproject.org/files/ENCFF588ZXC/@@download/ENCFF588ZXC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/a1816b69-9af9-4428-a5f7-168631313d29/ENCFF588ZXC.fastq.gz mild to moderate bottlenecking, low read length ENCFF029VZG fastq fastq reads ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 663235296 Zhiping Weng, UMass 2457ba6cadb98fd9078401e6756d5193 SRA:SRR1067400 https://www.encodeproject.org/files/ENCFF029VZG/@@download/ENCFF029VZG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/a77be536-2ac6-4073-ad69-6d039a74960f/ENCFF029VZG.fastq.gz mild to moderate bottlenecking, low read length ENCFF290BAP bam bam unfiltered alignments hg19 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF029VZG/, /files/ENCFF807MUK/, /files/ENCFF425MWD/, /files/ENCFF851CEK/, /files/ENCFF588ZXC/ 1741519904 ENCODE Processing Pipeline 64e93869fb26d84daa2399b1e1c44c8a https://www.encodeproject.org/files/ENCFF290BAP/@@download/ENCFF290BAP.bam released s3://encode-public/2016/12/19/cbe445c3-b5b6-4a18-b168-169720cbb336/ENCFF290BAP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF291KEI bam bam unfiltered alignments GRCh38 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF029VZG/, /files/ENCFF643CGH/, /files/ENCFF425MWD/, /files/ENCFF851CEK/, /files/ENCFF588ZXC/ 1755689293 ENCODE Processing Pipeline 3d72de02f2889136970d56fd00ea14ac https://www.encodeproject.org/files/ENCFF291KEI/@@download/ENCFF291KEI.bam released s3://encode-public/2016/12/19/da54f991-d50a-43e0-983f-ca3a98371eee/ENCFF291KEI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF873KZQ bam bam alignments hg19 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF029VZG/, /files/ENCFF807MUK/, /files/ENCFF425MWD/, /files/ENCFF851CEK/, /files/ENCFF588ZXC/ 1242455834 ENCODE Processing Pipeline e686635fdde767de1b0b7c41df325774 https://www.encodeproject.org/files/ENCFF873KZQ/@@download/ENCFF873KZQ.bam released s3://encode-public/2016/12/19/048eb431-a0fb-4fc3-a092-09b51bf65fed/ENCFF873KZQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF343ILJ bam bam alignments GRCh38 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF029VZG/, /files/ENCFF643CGH/, /files/ENCFF425MWD/, /files/ENCFF851CEK/, /files/ENCFF588ZXC/ 1242091383 ENCODE Processing Pipeline f50bfb552571bcf60e0276969957e5d3 https://www.encodeproject.org/files/ENCFF343ILJ/@@download/ENCFF343ILJ.bam released s3://encode-public/2016/12/19/6acd936d-1bb6-4720-bcfc-217e908371ff/ENCFF343ILJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF074LFB tagAlign tagAlign alignments hg19 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF094QSY/, /files/ENCFF023WWL/ 286297229 Anshul Kundaje, Stanford 3a268a216255ff2ce3d8c647d301b8d3 https://www.encodeproject.org/files/ENCFF074LFB/@@download/ENCFF074LFB.tagAlign.gz archived s3://encode-public/2016/03/30/38acee47-9798-40d0-83ae-4f2458ac341e/ENCFF074LFB.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF602YBU bam bam redacted unfiltered alignments hg19 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF094QSY/, /files/ENCFF023WWL/ 977625284 ENCODE Processing Pipeline bf74421cb4c73885327cf59a8949fa76 https://www.encodeproject.org/files/ENCFF602YBU/@@download/ENCFF602YBU.bam released s3://encode-public/2018/01/19/43d87645-aa50-4f1a-bafc-4993f56c11b0/ENCFF602YBU.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF672XRL bam bam redacted unfiltered alignments GRCh38 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF094QSY/, /files/ENCFF023WWL/ 987027950 ENCODE Processing Pipeline 706f0dc28e7bb075967fcc347d68b3b4 https://www.encodeproject.org/files/ENCFF672XRL/@@download/ENCFF672XRL.bam released s3://encode-public/2018/01/19/02ffa44d-cf1b-491c-bc00-065781189526/ENCFF672XRL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF421BMD bam bam redacted alignments GRCh38 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF094QSY/, /files/ENCFF023WWL/ 598420971 ENCODE Processing Pipeline 27c0c0def00c59d729afb9e537c98589 https://www.encodeproject.org/files/ENCFF421BMD/@@download/ENCFF421BMD.bam released s3://encode-public/2018/01/19/2b9c2b37-6983-4f38-8874-c7b874dc307b/ENCFF421BMD.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF818XEH bam bam redacted alignments hg19 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF094QSY/, /files/ENCFF023WWL/ 598469650 ENCODE Processing Pipeline f6a428dcbb623ef73e0c5a72b6e0955e https://www.encodeproject.org/files/ENCFF818XEH/@@download/ENCFF818XEH.bam released s3://encode-public/2018/01/19/60b5d144-885a-4fba-b781-61831d2281d9/ENCFF818XEH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF419MFI bam bam redacted alignments GRCh38 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO194EHQ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF425MWD/, /files/ENCFF029VZG/, /files/ENCFF851CEK/, /files/ENCFF588ZXC/, /files/ENCFF110MCL/ 1355181204 ENCODE Processing Pipeline fcbea71730a3f8bff324d91ec281942c https://www.encodeproject.org/files/ENCFF419MFI/@@download/ENCFF419MFI.bam released s3://encode-public/2021/01/27/3c61333c-ab6a-4499-8a93-d67e9b3f6da9/ENCFF419MFI.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length ENCFF784DGV bam bam redacted alignments GRCh38 ENCSR355RJN Control ChIP-seq /human-donors/ENCDO779YRY/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF094QSY/, /files/ENCFF110MCL/, /files/ENCFF023WWL/ 1911179103 ENCODE Processing Pipeline 5d6c2fc797d7ca867e2fffd52a11e839 https://www.encodeproject.org/files/ENCFF784DGV/@@download/ENCFF784DGV.bam released s3://encode-public/2021/01/27/30049898-d6e0-42c1-9211-4d420685b943/ENCFF784DGV.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length ENCFF930YZU bam bam alignments dm3 ENCSR139RMN Control ChIP-seq /fly-donors/ENCDO126AVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37795/'], '@type': ['Target', 'Item'], 'name': 'Lpt-dmelanogaster', 'label': 'Lpt', '@id': '/targets/Lpt-dmelanogaster/', 'title': 'Lpt (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'db718fdf-d722-43db-93e1-dc1bd8ac9c5a', 'status': 'released'} dm3 2R 19777331 19801872 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF753DNB/ 372224264 Kevin White, UChicago 336b449c5f6c49d4fdb91337c7423496 https://www.encodeproject.org/files/ENCFF930YZU/@@download/ENCFF930YZU.bam released s3://encode-public/2015/10/22/4a6f864f-2636-4ed6-bf0d-2a29c3143d3a/ENCFF930YZU.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF753DNB fastq fastq reads ENCSR139RMN Control ChIP-seq /fly-donors/ENCDO126AVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37795/'], '@type': ['Target', 'Item'], 'name': 'Lpt-dmelanogaster', 'label': 'Lpt', '@id': '/targets/Lpt-dmelanogaster/', 'title': 'Lpt (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'db718fdf-d722-43db-93e1-dc1bd8ac9c5a', 'status': 'released'} dm3 2R 19777331 19801872 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 306741011 Kevin White, UChicago a4db16dc7c75da6d091536181933b93f https://www.encodeproject.org/files/ENCFF753DNB/@@download/ENCFF753DNB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/10/22/a3cdfb67-30c7-4fea-bb6b-43933ed48319/ENCFF753DNB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF921BDW bigWig bigWig signal of unique reads dm3 ENCSR139RMN Control ChIP-seq /fly-donors/ENCDO126AVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37795/'], '@type': ['Target', 'Item'], 'name': 'Lpt-dmelanogaster', 'label': 'Lpt', '@id': '/targets/Lpt-dmelanogaster/', 'title': 'Lpt (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'db718fdf-d722-43db-93e1-dc1bd8ac9c5a', 'status': 'released'} dm3 2R 19777331 19801872 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF930YZU/ 15152000 Kevin White, UChicago 210746fbb4a261bc4addc5497210580c https://www.encodeproject.org/files/ENCFF921BDW/@@download/ENCFF921BDW.bigWig released s3://encode-public/2015/10/22/dff56177-ec05-48db-b61c-4ab0d9e2ffbf/ENCFF921BDW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF420RLC bigWig bigWig read-depth normalized signal dm3 ENCSR139RMN Control ChIP-seq /fly-donors/ENCDO126AVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37795/'], '@type': ['Target', 'Item'], 'name': 'Lpt-dmelanogaster', 'label': 'Lpt', '@id': '/targets/Lpt-dmelanogaster/', 'title': 'Lpt (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'db718fdf-d722-43db-93e1-dc1bd8ac9c5a', 'status': 'released'} dm3 2R 19777331 19801872 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF930YZU/ 15177834 Kevin White, UChicago d675515e70715e8ec015a9851707379e https://www.encodeproject.org/files/ENCFF420RLC/@@download/ENCFF420RLC.bigWig released s3://encode-public/2015/10/22/d0b6050f-961b-4bec-83e1-f4dacffbff22/ENCFF420RLC.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF317TYB bam bam alignments dm6 ENCSR139RMN Control ChIP-seq /fly-donors/ENCDO126AVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37795/'], '@type': ['Target', 'Item'], 'name': 'Lpt-dmelanogaster', 'label': 'Lpt', '@id': '/targets/Lpt-dmelanogaster/', 'title': 'Lpt (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'db718fdf-d722-43db-93e1-dc1bd8ac9c5a', 'status': 'released'} dm3 2R 19777331 19801872 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF753DNB/ 371512319 Kevin White, UChicago e46e256408e805a59e10efcd102d067d https://www.encodeproject.org/files/ENCFF317TYB/@@download/ENCFF317TYB.bam released s3://encode-public/2016/04/21/dc155086-10aa-46a7-8ea2-aa27b465925a/ENCFF317TYB.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF728JFQ bigWig bigWig signal of unique reads dm6 ENCSR139RMN Control ChIP-seq /fly-donors/ENCDO126AVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37795/'], '@type': ['Target', 'Item'], 'name': 'Lpt-dmelanogaster', 'label': 'Lpt', '@id': '/targets/Lpt-dmelanogaster/', 'title': 'Lpt (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'db718fdf-d722-43db-93e1-dc1bd8ac9c5a', 'status': 'released'} dm3 2R 19777331 19801872 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF317TYB/ 17115337 Kevin White, UChicago 1b61f98eff8e1d0d5b756c8462840a0d https://www.encodeproject.org/files/ENCFF728JFQ/@@download/ENCFF728JFQ.bigWig released s3://encode-public/2016/06/20/4a33fb3a-3395-47f0-9144-d2a2ee272543/ENCFF728JFQ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF726VDY bigWig bigWig read-depth normalized signal dm6 ENCSR139RMN Control ChIP-seq /fly-donors/ENCDO126AVH/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/37795/'], '@type': ['Target', 'Item'], 'name': 'Lpt-dmelanogaster', 'label': 'Lpt', '@id': '/targets/Lpt-dmelanogaster/', 'title': 'Lpt (Drosophila melanogaster)', 'investigated_as': ['chromatin remodeler'], 'uuid': 'db718fdf-d722-43db-93e1-dc1bd8ac9c5a', 'status': 'released'} dm3 2R 19777331 19801872 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF317TYB/ 17154643 Kevin White, UChicago 1c230c13653e6b5ef59f3af0bbc3e5dd https://www.encodeproject.org/files/ENCFF726VDY/@@download/ENCFF726VDY.bigWig released s3://encode-public/2016/06/20/e9a6ded1-08b8-4748-a712-ff9fbe1322a6/ENCFF726VDY.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF218WSN tagAlign tagAlign alignments hg19 ENCSR792FSD Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/ENCFF147BLO/, /files/ENCFF134SPR/, /files/ENCFF279QGV/ 183319080 Anshul Kundaje, Stanford 540d264e3ff3bf20f20045cdca86ddd9 https://www.encodeproject.org/files/ENCFF218WSN/@@download/ENCFF218WSN.tagAlign.gz archived s3://encode-public/2016/03/30/85911be3-c1c4-48a9-b492-8e789f01ad15/ENCFF218WSN.tagAlign.gz Lab custom hg19 archived low read length ENCFF844NCA bam bam redacted unfiltered alignments hg19 ENCSR792FSD Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF147BLO/, /files/ENCFF134SPR/, /files/ENCFF807MUK/, /files/ENCFF279QGV/ 547095686 ENCODE Processing Pipeline e32fe6baaeced551256fd3771f9121f3 https://www.encodeproject.org/files/ENCFF844NCA/@@download/ENCFF844NCA.bam released s3://encode-public/2018/01/24/d05906f6-f198-45ae-aefd-56c7240e3ac0/ENCFF844NCA.bam ENCODE3 hg19 archived low read length ENCFF099IRN bam bam redacted alignments hg19 ENCSR792FSD Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF147BLO/, /files/ENCFF134SPR/, /files/ENCFF807MUK/, /files/ENCFF279QGV/ 386866404 ENCODE Processing Pipeline 26b659ee9bf9056e0b5ece7a725aba42 https://www.encodeproject.org/files/ENCFF099IRN/@@download/ENCFF099IRN.bam released s3://encode-public/2018/01/24/e0ba0aff-3981-406e-90cf-4a7e0f192ccb/ENCFF099IRN.bam ENCODE3 hg19 archived low read length ENCFF044KMD bam bam redacted alignments GRCh38 ENCSR792FSD Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF147BLO/, /files/ENCFF134SPR/, /files/ENCFF643CGH/, /files/ENCFF279QGV/ 386882089 ENCODE Processing Pipeline 830a66d6de2080a86e519171b4afa2f1 https://www.encodeproject.org/files/ENCFF044KMD/@@download/ENCFF044KMD.bam released s3://encode-public/2018/01/24/9bd757a9-a41f-4171-882a-c69070b5fcef/ENCFF044KMD.bam ENCODE3 GRCh38 archived low read length ENCFF849MKL bam bam redacted unfiltered alignments GRCh38 ENCSR792FSD Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF147BLO/, /files/ENCFF134SPR/, /files/ENCFF643CGH/, /files/ENCFF279QGV/ 553210473 ENCODE Processing Pipeline 5a81deb0d23a6575577aabcd5156843d https://www.encodeproject.org/files/ENCFF849MKL/@@download/ENCFF849MKL.bam released s3://encode-public/2018/01/24/162ceb7c-db3b-4033-9a9e-bfc37c74ff21/ENCFF849MKL.bam ENCODE3 GRCh38 archived low read length ENCFF257TSF bam bam redacted alignments GRCh38 ENCSR792FSD Control ChIP-seq /human-donors/ENCDO922CEJ/ CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF110MCL/, /files/ENCFF279QGV/, /files/ENCFF147BLO/, /files/ENCFF134SPR/ 1158690751 ENCODE Processing Pipeline 57445fbaaa7f9cd8ac972fd4ac8c148c https://www.encodeproject.org/files/ENCFF257TSF/@@download/ENCFF257TSF.bam released s3://encode-public/2021/01/27/54d71b85-fc36-42cf-984c-2805abaf7b93/ENCFF257TSF.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF927OUN fastq fastq reads ENCSR979YKY Control ChIP-seq /human-donors/ENCDO439CAZ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 534153015 Bradley Bernstein, Broad 04780ad2f11f4fd839f4c126258f0e27 SRA:SRR16814466 https://www.encodeproject.org/files/ENCFF927OUN/@@download/ENCFF927OUN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/6a3ba94a-b9f0-4f18-b3ea-ea2306425f41/ENCFF927OUN.fastq.gz ENCFF960BDR fastq fastq reads ENCSR979YKY Control ChIP-seq /human-donors/ENCDO439CAZ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 538636269 Bradley Bernstein, Broad b2ba43ee77ac0ed78b5dd82f0c3fa9c6 SRA:SRR16814467 https://www.encodeproject.org/files/ENCFF960BDR/@@download/ENCFF960BDR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/2cbe2e43-e9ae-47bf-ae1c-59932027d3a0/ENCFF960BDR.fastq.gz ENCFF946HRQ fastq fastq reads ENCSR979YKY Control ChIP-seq /human-donors/ENCDO439CAZ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 532497468 Bradley Bernstein, Broad eb01e0edf4f66a6449975ad2da7c7b69 SRA:SRR16814468 https://www.encodeproject.org/files/ENCFF946HRQ/@@download/ENCFF946HRQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/f9aa83f1-1b35-457c-928e-5208b1250be2/ENCFF946HRQ.fastq.gz ENCFF837DUR fastq fastq reads ENCSR979YKY Control ChIP-seq /human-donors/ENCDO439CAZ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 534502835 Bradley Bernstein, Broad 3a84a79349ec37ed99385cd4024bbc67 SRA:SRR16814469 https://www.encodeproject.org/files/ENCFF837DUR/@@download/ENCFF837DUR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/0c6c7fc6-2949-42ce-9437-97345444201c/ENCFF837DUR.fastq.gz ENCFF814OJR bam bam unfiltered alignments GRCh38 ENCSR979YKY Control ChIP-seq /human-donors/ENCDO439CAZ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 /files/ENCFF960BDR/, /files/ENCFF927OUN/, /files/ENCFF110MCL/, /files/ENCFF946HRQ/, /files/ENCFF837DUR/ 2154190327 ENCODE Processing Pipeline 9835da2058f1195ed87dd4933a9ed419 https://www.encodeproject.org/files/ENCFF814OJR/@@download/ENCFF814OJR.bam released s3://encode-public/2021/09/14/868fc9fd-2afe-4254-8ea7-776dc1ebb520/ENCFF814OJR.bam ENCODE4 v1.8.0 GRCh38 released ENCFF525NLT bam bam alignments GRCh38 ENCSR979YKY Control ChIP-seq /human-donors/ENCDO439CAZ/ UBERON:0002084 heart left ventricle tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 /files/ENCFF960BDR/, /files/ENCFF927OUN/, /files/ENCFF110MCL/, /files/ENCFF946HRQ/, /files/ENCFF837DUR/ 1792941013 ENCODE Processing Pipeline 320637028bcd42144fd1c5b053fd9e80 https://www.encodeproject.org/files/ENCFF525NLT/@@download/ENCFF525NLT.bam released s3://encode-public/2021/09/14/11301913-5da3-4347-8628-c9ea908d3330/ENCFF525NLT.bam ENCODE4 v1.8.0 GRCh38 released ENCFF528RIS fastq fastq reads ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 155685766 Michael Snyder, Stanford d8202b81a8b777b401e9b4b15e2e3aed https://www.encodeproject.org/files/ENCFF528RIS/@@download/ENCFF528RIS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/1e27e67e-fd7b-42e6-bfdb-9e52b39fab0a/ENCFF528RIS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF503MFV fastq fastq reads ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 132329456 Michael Snyder, Stanford 76251a4072dcb13848c9027739dc9cee https://www.encodeproject.org/files/ENCFF503MFV/@@download/ENCFF503MFV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/26c934c7-6c98-49c0-b322-c0c39990c4a3/ENCFF503MFV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF754JEE bam bam alignments ce10 ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF528RIS/, /files/ENCFF503MFV/, /files/ENCFF987UMF/ 377120082 Kevin White, UChicago 6b0b0febb171eff7a691492fc7a243ac https://www.encodeproject.org/files/ENCFF754JEE/@@download/ENCFF754JEE.bam released s3://encode-public/2016/10/18/db06653a-72d1-4798-89fd-6107d565b39e/ENCFF754JEE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF280TCK bam bam alignments ce11 ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF528RIS/, /files/ENCFF503MFV/, /files/ENCFF586MOL/ 377540377 Kevin White, UChicago 1dd1fb7b7976f8691b5d36c63862bca0 https://www.encodeproject.org/files/ENCFF280TCK/@@download/ENCFF280TCK.bam released s3://encode-public/2016/10/19/ee1e5a20-1efd-44af-9128-456d7123bd3e/ENCFF280TCK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF263YLE bigWig bigWig read-depth normalized signal ce10 ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF754JEE/ 9993618 Kevin White, UChicago efd62b7d6723c857f0c8db4590756ca1 https://www.encodeproject.org/files/ENCFF263YLE/@@download/ENCFF263YLE.bigWig released s3://encode-public/2016/10/20/f4f7c504-43ce-41d1-b5b7-ec99aed345f9/ENCFF263YLE.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF590SOY bigWig bigWig signal of unique reads ce10 ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF754JEE/ 10034845 Kevin White, UChicago 2ed167cd7ff5bebee2d2eb3ebb632551 https://www.encodeproject.org/files/ENCFF590SOY/@@download/ENCFF590SOY.bigWig released s3://encode-public/2016/10/20/bc1933f8-a397-4d51-ae05-5c95943453ee/ENCFF590SOY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF444XJC bigWig bigWig read-depth normalized signal ce11 ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF280TCK/ 9992689 Kevin White, UChicago 27c154f416ac032a81228916b8a7bcb5 https://www.encodeproject.org/files/ENCFF444XJC/@@download/ENCFF444XJC.bigWig released s3://encode-public/2016/10/21/1b831650-392e-4c32-82dd-3a9d97395bbb/ENCFF444XJC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF822ILH bigWig bigWig signal of unique reads ce11 ENCSR960DUC Control ChIP-seq /worm-donors/ENCDO408ESQ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172422/'], '@type': ['Target', 'Item'], 'name': 'ztf-4-celegans', 'label': 'ztf-4', '@id': '/targets/ztf-4-celegans/', 'title': 'ztf-4 (Caenorhabditis elegans)', 'investigated_as': ['RNA binding protein'], 'uuid': '0efe1704-a71e-4a23-a19a-8909c3f1a1e3', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF280TCK/ 10035834 Kevin White, UChicago a78af56abf28f3dccc1c7502137ff783 https://www.encodeproject.org/files/ENCFF822ILH/@@download/ENCFF822ILH.bigWig released s3://encode-public/2016/10/21/ac725eb4-2b42-4854-954f-72e137d3685f/ENCFF822ILH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF704BRS tagAlign tagAlign alignments hg19 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF516KXU/ 438279951 Anshul Kundaje, Stanford 7a09557ddaf2cf215df4e89a0e535a79 https://www.encodeproject.org/files/ENCFF704BRS/@@download/ENCFF704BRS.tagAlign.gz archived s3://encode-public/2016/03/30/73df3022-8330-4e12-8776-a0ea902e2bde/ENCFF704BRS.tagAlign.gz Lab custom hg19 archived low read length ENCFF318FCD fastq fastq reads ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 single-ended 1625323724 Zhiping Weng, UMass 93917ed4da060968177011be9e6591df SRA:SRR1067078 https://www.encodeproject.org/files/ENCFF318FCD/@@download/ENCFF318FCD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/408d6c98-11ac-45e9-8874-f8cb482f147b/ENCFF318FCD.fastq.gz low read length ENCFF516KXU fastq fastq reads ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1854025228 Zhiping Weng, UMass a0cc18f943869f3e430fceea7454ef10 SRA:SRR1067026 https://www.encodeproject.org/files/ENCFF516KXU/@@download/ENCFF516KXU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2016/10/20/86e7eab2-501d-4520-8858-d34405650e1f/ENCFF516KXU.fastq.gz low read length ENCFF940SHO bam bam alignments GRCh38 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF318FCD/, /files/ENCFF110MCL/ 1516033655 ENCODE Processing Pipeline f3a5cf22becffdffeb6b43e725a79997 https://www.encodeproject.org/files/ENCFF940SHO/@@download/ENCFF940SHO.bam released s3://encode-public/2020/10/08/07d26c5b-cfc0-403f-8fc0-e73a8a1bc8ca/ENCFF940SHO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF762DUH tagAlign tagAlign alignments hg19 ENCSR289BKE Control ChIP-seq CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 204502066 Anshul Kundaje, Stanford 11184e597bd028d1b47ac0cf52cfe181 https://www.encodeproject.org/files/ENCFF762DUH/@@download/ENCFF762DUH.tagAlign.gz archived s3://encode-public/2016/02/11/d7ce6a69-7522-4281-9612-4499c554ea26/ENCFF762DUH.tagAlign.gz Lab custom hg19 archived low read length ENCFF772IED bam bam unfiltered alignments GRCh38 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF318FCD/, /files/ENCFF643CGH/ 1904847223 ENCODE Processing Pipeline befc16fdade15c6de53118edeaeac5ff https://www.encodeproject.org/files/ENCFF772IED/@@download/ENCFF772IED.bam released s3://encode-public/2017/07/11/8de4d984-0eba-4b6f-b2dc-7399fc0f78f0/ENCFF772IED.bam ENCODE3 GRCh38 archived low read length ENCFF556HFU bam bam alignments GRCh38 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated 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Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF516KXU/ 2159865710 ENCODE Processing Pipeline 7e1382182c7bb589e7c9d8d6c5562e76 https://www.encodeproject.org/files/ENCFF590QIE/@@download/ENCFF590QIE.bam released s3://encode-public/2017/07/11/4e9c9c2d-5e37-40df-92b8-3cc726f83706/ENCFF590QIE.bam ENCODE3 hg19 archived low read length ENCFF436NHT bam bam alignments hg19 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF516KXU/ 1581544912 ENCODE Processing Pipeline 602276843bc6648394925fb12bb2b005 https://www.encodeproject.org/files/ENCFF436NHT/@@download/ENCFF436NHT.bam released s3://encode-public/2017/07/11/c0d4b84f-e2ed-4ba8-b364-13d2c4516ae0/ENCFF436NHT.bam ENCODE3 hg19 archived low read length ENCFF052CTR bam bam alignments hg19 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF318FCD/, /files/ENCFF807MUK/ 1397327122 ENCODE Processing Pipeline adc7aba0235922e271edabe3b470494e https://www.encodeproject.org/files/ENCFF052CTR/@@download/ENCFF052CTR.bam released s3://encode-public/2017/07/11/cbb313b6-f96b-4b6a-b2d6-8c059548b2df/ENCFF052CTR.bam ENCODE3 hg19 archived low read length ENCFF213SSU bam bam alignments GRCh38 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF516KXU/ 1694728539 ENCODE Processing Pipeline 13880852ae8b173e8c4b4c944f6e6876 https://www.encodeproject.org/files/ENCFF213SSU/@@download/ENCFF213SSU.bam released s3://encode-public/2020/10/08/f91d7979-a2f0-4072-8f86-9ada3fd585ac/ENCFF213SSU.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF532RCD bam bam unfiltered alignments GRCh38 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF516KXU/ 2118378070 ENCODE Processing Pipeline 3f826ad20547da7274bbdc6a51922591 https://www.encodeproject.org/files/ENCFF532RCD/@@download/ENCFF532RCD.bam released s3://encode-public/2020/10/08/a72c7d93-09bb-4fda-9e08-71917f2ab545/ENCFF532RCD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF537QUO bam bam unfiltered alignments GRCh38 ENCSR289BKE Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0000047 neuronal stem cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF318FCD/, /files/ENCFF110MCL/ 1860256425 ENCODE Processing Pipeline f131fea98b20b824dd1e63a9358bd3cd https://www.encodeproject.org/files/ENCFF537QUO/@@download/ENCFF537QUO.bam released s3://encode-public/2020/10/08/00848fd3-68bd-4945-9d93-733046e98d0d/ENCFF537QUO.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF311XBW fastq fastq reads ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 206140963 Michael Snyder, Stanford 7ca9073edbd2a7104a69574fdd2588f8 https://www.encodeproject.org/files/ENCFF311XBW/@@download/ENCFF311XBW.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/3410d4e7-fbf1-469f-bfdd-5f6a47dd38ef/ENCFF311XBW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF159VOZ fastq fastq reads ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 197497695 Michael Snyder, Stanford fbe0b78325a027bc1ee8bb0cee99d3d4 https://www.encodeproject.org/files/ENCFF159VOZ/@@download/ENCFF159VOZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/f9120e8c-9843-4d94-b174-8704d4bd6836/ENCFF159VOZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF497ASK bam bam alignments ce10 ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF311XBW/, /files/ENCFF159VOZ/, /files/ENCFF987UMF/ 490404916 Kevin White, UChicago 7233b48de68c3d41e4df6d02f6dafd74 https://www.encodeproject.org/files/ENCFF497ASK/@@download/ENCFF497ASK.bam released s3://encode-public/2016/10/18/eae3d03c-25de-4119-9e1a-704ab4ed500d/ENCFF497ASK.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF336ROP bam bam alignments ce11 ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF311XBW/, /files/ENCFF159VOZ/, /files/ENCFF586MOL/ 490867324 Kevin White, UChicago 1e06d5bb783aabad1e46df386b9f0106 https://www.encodeproject.org/files/ENCFF336ROP/@@download/ENCFF336ROP.bam released s3://encode-public/2016/10/18/d74a6efb-8edb-486d-a4a6-d038288ebf94/ENCFF336ROP.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF468KDT bigWig bigWig read-depth normalized signal ce10 ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF497ASK/ 9953244 Kevin White, UChicago a17db10412e666464eee63bbc32f80d6 https://www.encodeproject.org/files/ENCFF468KDT/@@download/ENCFF468KDT.bigWig released s3://encode-public/2016/10/20/4ddcd467-4197-485d-a299-80b9fbfb8603/ENCFF468KDT.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF045IMS bigWig bigWig signal of unique reads ce10 ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF497ASK/ 10003033 Kevin White, UChicago 79fe3ad244966f2d98ce03e28022ede0 https://www.encodeproject.org/files/ENCFF045IMS/@@download/ENCFF045IMS.bigWig released s3://encode-public/2016/10/20/61601689-348d-4e85-8a1f-59c90165383d/ENCFF045IMS.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF462VZW bigWig bigWig signal of unique reads ce11 ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF336ROP/ 10000972 Kevin White, UChicago 326fec4792876e2cec116609ec891f53 https://www.encodeproject.org/files/ENCFF462VZW/@@download/ENCFF462VZW.bigWig released s3://encode-public/2016/10/20/5dbdbe09-3f7c-4aaf-ae11-1c33fdba288d/ENCFF462VZW.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF947BUH bigWig bigWig read-depth normalized signal ce11 ENCSR941NAK Control ChIP-seq /worm-donors/ENCDO876STP/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181263/'], '@type': ['Target', 'Item'], 'name': 'daf-12-celegans', 'label': 'daf-12', '@id': '/targets/daf-12-celegans/', 'title': 'daf-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd0edff48-6544-4657-8eb0-b375ab30c33b', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF336ROP/ 9950608 Kevin White, UChicago 7a21db587d046751f735a66d32c099d5 https://www.encodeproject.org/files/ENCFF947BUH/@@download/ENCFF947BUH.bigWig released s3://encode-public/2016/10/20/e63081c1-2587-441c-9448-5ee2577d7fab/ENCFF947BUH.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF668DPJ fastq fastq reads ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 203639279 Michael Snyder, Stanford 84d3a12d7d1d756524b977d36783ef46 https://www.encodeproject.org/files/ENCFF668DPJ/@@download/ENCFF668DPJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/8641eaac-0411-4e56-ac3d-66dbe2576367/ENCFF668DPJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF905COU fastq fastq reads ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 234444130 Michael Snyder, Stanford 884cc1ae12fe3939d69a5575cf47d135 https://www.encodeproject.org/files/ENCFF905COU/@@download/ENCFF905COU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/dbfd8e5e-bf62-4ba5-9610-0940a86f818d/ENCFF905COU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF864IGL bam bam alignments ce10 ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF668DPJ/, /files/ENCFF905COU/, /files/ENCFF987UMF/ 571157176 Kevin White, UChicago 2387344f1423e6b6f4ebfbd58a306fd5 https://www.encodeproject.org/files/ENCFF864IGL/@@download/ENCFF864IGL.bam released s3://encode-public/2016/10/18/eb5ac5f6-33ff-4d3e-b213-dbdf0f08d229/ENCFF864IGL.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF778PCX bam bam alignments ce11 ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF668DPJ/, /files/ENCFF905COU/, /files/ENCFF586MOL/ 571790548 Kevin White, UChicago 2388eeee32f2573d0f4280a69fcf0d53 https://www.encodeproject.org/files/ENCFF778PCX/@@download/ENCFF778PCX.bam released s3://encode-public/2016/10/19/d12a47dd-bb4d-4d77-afa3-525b70caa2de/ENCFF778PCX.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF106HHT bigWig bigWig read-depth normalized signal ce10 ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF864IGL/ 10010352 Kevin White, UChicago 5a8dc66447a35b5df4b87e7f114ebbb0 https://www.encodeproject.org/files/ENCFF106HHT/@@download/ENCFF106HHT.bigWig released s3://encode-public/2016/10/20/0bb378d1-7ccc-475c-9bcc-46ee21869f94/ENCFF106HHT.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF703VEG bigWig bigWig signal of unique reads ce10 ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF864IGL/ 9989759 Kevin White, UChicago 7cce122c0a0ebedff42ca9bf5c62b71a https://www.encodeproject.org/files/ENCFF703VEG/@@download/ENCFF703VEG.bigWig released s3://encode-public/2016/10/20/0fd4668b-aa21-412d-b4d2-01d5e83fcaac/ENCFF703VEG.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF012KSD bigWig bigWig signal of unique reads ce11 ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF778PCX/ 9988729 Kevin White, UChicago 10e4b31be50889f63293375daade9008 https://www.encodeproject.org/files/ENCFF012KSD/@@download/ENCFF012KSD.bigWig released s3://encode-public/2016/10/21/a4124ca6-d773-4ded-bfff-4400b9e521ae/ENCFF012KSD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF334XFJ bigWig bigWig read-depth normalized signal ce11 ENCSR615EJQ Control ChIP-seq /worm-donors/ENCDO559WKC/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177724/'], '@type': ['Target', 'Item'], 'name': 'nhr-11-celegans', 'label': 'nhr-11', '@id': '/targets/nhr-11-celegans/', 'title': 'nhr-11 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'b38aa226-e70e-46ea-9783-081a089b97fc', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF778PCX/ 10011644 Kevin White, UChicago 758ac6c96e34dd0f1dc55c3925bb7da3 https://www.encodeproject.org/files/ENCFF334XFJ/@@download/ENCFF334XFJ.bigWig released s3://encode-public/2016/10/21/d4dc6512-7ef8-410c-873c-eb95b7d8d218/ENCFF334XFJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF718KSH fastq fastq reads ENCSR961MTI Control ChIP-seq /fly-donors/ENCDO888PPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38091/'], '@type': ['Target', 'Item'], 'name': 'emc-dmelanogaster', 'label': 'emc', '@id': '/targets/emc-dmelanogaster/', 'title': 'emc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '18012c24-b48f-4ce7-a703-b7fa7503d6c7', 'status': 'released'} dm3 3L 734348 754094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 444439430 Kevin White, UChicago f0240f7bc92e08d0ebceb5b8c7433a30 https://www.encodeproject.org/files/ENCFF718KSH/@@download/ENCFF718KSH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/23/9b64b4d8-9e61-407b-a9bf-a86164df578a/ENCFF718KSH.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF995EVH bam bam alignments dm3 ENCSR961MTI Control ChIP-seq /fly-donors/ENCDO888PPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38091/'], '@type': ['Target', 'Item'], 'name': 'emc-dmelanogaster', 'label': 'emc', '@id': '/targets/emc-dmelanogaster/', 'title': 'emc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '18012c24-b48f-4ce7-a703-b7fa7503d6c7', 'status': 'released'} dm3 3L 734348 754094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF718KSH/ 653356520 Kevin White, UChicago 55f6d86920c604c4986a18691948661b https://www.encodeproject.org/files/ENCFF995EVH/@@download/ENCFF995EVH.bam released s3://encode-public/2015/08/03/45cef43d-bccc-4420-a190-01f1963b8357/ENCFF995EVH.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF582ZWK bigWig bigWig read-depth normalized signal dm3 ENCSR961MTI Control ChIP-seq /fly-donors/ENCDO888PPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38091/'], '@type': ['Target', 'Item'], 'name': 'emc-dmelanogaster', 'label': 'emc', '@id': '/targets/emc-dmelanogaster/', 'title': 'emc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '18012c24-b48f-4ce7-a703-b7fa7503d6c7', 'status': 'released'} dm3 3L 734348 754094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF995EVH/ 15327397 Kevin White, UChicago e6059f3c0a5f016a0b882f9d0d9ddacc https://www.encodeproject.org/files/ENCFF582ZWK/@@download/ENCFF582ZWK.bigWig released s3://encode-public/2015/10/05/d75ea59a-8d66-4737-9ca7-0b5275777a3f/ENCFF582ZWK.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF510FEL bigWig bigWig signal of unique reads dm3 ENCSR961MTI Control ChIP-seq /fly-donors/ENCDO888PPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38091/'], '@type': ['Target', 'Item'], 'name': 'emc-dmelanogaster', 'label': 'emc', '@id': '/targets/emc-dmelanogaster/', 'title': 'emc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '18012c24-b48f-4ce7-a703-b7fa7503d6c7', 'status': 'released'} dm3 3L 734348 754094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF995EVH/ 15343359 Kevin White, UChicago 69099beb9f40056fd99d0efd2bdd74d3 https://www.encodeproject.org/files/ENCFF510FEL/@@download/ENCFF510FEL.bigWig released s3://encode-public/2015/10/05/4dd2110c-8aad-4a43-9df0-39a180cc12c7/ENCFF510FEL.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF889ZEN bam bam alignments dm6 ENCSR961MTI Control ChIP-seq /fly-donors/ENCDO888PPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38091/'], '@type': ['Target', 'Item'], 'name': 'emc-dmelanogaster', 'label': 'emc', '@id': '/targets/emc-dmelanogaster/', 'title': 'emc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '18012c24-b48f-4ce7-a703-b7fa7503d6c7', 'status': 'released'} dm3 3L 734348 754094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF718KSH/ 651327881 Kevin White, UChicago b278c1088a6f5a40d55e1e1c33eefec8 https://www.encodeproject.org/files/ENCFF889ZEN/@@download/ENCFF889ZEN.bam released s3://encode-public/2016/04/21/526c20f6-630b-4101-ad03-1b2f11cc74ae/ENCFF889ZEN.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF010RME bigWig bigWig signal of unique reads dm6 ENCSR961MTI Control ChIP-seq /fly-donors/ENCDO888PPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38091/'], '@type': ['Target', 'Item'], 'name': 'emc-dmelanogaster', 'label': 'emc', '@id': '/targets/emc-dmelanogaster/', 'title': 'emc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '18012c24-b48f-4ce7-a703-b7fa7503d6c7', 'status': 'released'} dm3 3L 734348 754094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF889ZEN/ 17454501 Kevin White, UChicago 8462f6a105e56762c38d855f041958fd https://www.encodeproject.org/files/ENCFF010RME/@@download/ENCFF010RME.bigWig released s3://encode-public/2016/06/20/5fa65c4f-287a-4780-88e1-6176c8f91d86/ENCFF010RME.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF209XLE bigWig bigWig read-depth normalized signal dm6 ENCSR961MTI Control ChIP-seq /fly-donors/ENCDO888PPY/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38091/'], '@type': ['Target', 'Item'], 'name': 'emc-dmelanogaster', 'label': 'emc', '@id': '/targets/emc-dmelanogaster/', 'title': 'emc (Drosophila melanogaster)', 'investigated_as': ['cofactor'], 'uuid': '18012c24-b48f-4ce7-a703-b7fa7503d6c7', 'status': 'released'} dm3 3L 734348 754094 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF889ZEN/ 17421985 Kevin White, UChicago 4f41f96605937c7314442ac569e4dfe7 https://www.encodeproject.org/files/ENCFF209XLE/@@download/ENCFF209XLE.bigWig released s3://encode-public/2016/06/20/59847d25-c1c6-4d94-8d2a-05f6aa5519b7/ENCFF209XLE.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF920XCV fastq fastq reads ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF147IQP/ 1905571645 Richard Myers, HAIB a7aab7606f23d557b87fd784e36b6f83 SRA:SRR8660402 https://www.encodeproject.org/files/ENCFF920XCV/@@download/ENCFF920XCV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/af4a9cc7-ea91-4a0a-ab80-3d01e50de382/ENCFF920XCV.fastq.gz mild to moderate bottlenecking ENCFF147IQP fastq fastq reads ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF920XCV/ 1826626396 Richard Myers, HAIB b367aa74e27501aff37f44ce03b945aa SRA:SRR8660402 https://www.encodeproject.org/files/ENCFF147IQP/@@download/ENCFF147IQP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/01/8cdf86a5-698e-454e-983d-abc07033c3fb/ENCFF147IQP.fastq.gz mild to moderate bottlenecking ENCFF347KKQ bam bam unfiltered alignments hg19 ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF920XCV/, /files/ENCFF807MUK/, /files/ENCFF147IQP/ 4375647006 ENCODE Processing Pipeline e574c32afd07ebd9889f93c888c5827a https://www.encodeproject.org/files/ENCFF347KKQ/@@download/ENCFF347KKQ.bam released s3://encode-public/2017/02/02/d6dd1b0c-048f-45ee-b688-c5bbb67f5288/ENCFF347KKQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF417EUS bam bam unfiltered alignments GRCh38 ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF920XCV/, /files/ENCFF643CGH/, /files/ENCFF147IQP/ 4388930167 ENCODE Processing Pipeline 4c7e97e00ca593c57249f5f8daf41c52 https://www.encodeproject.org/files/ENCFF417EUS/@@download/ENCFF417EUS.bam released s3://encode-public/2017/02/02/173b7c75-4a69-4320-ae19-9bcec31da24f/ENCFF417EUS.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF836OQZ bam bam alignments hg19 ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF920XCV/, /files/ENCFF807MUK/, /files/ENCFF147IQP/ 3106352699 ENCODE Processing Pipeline bb13e6baa97fd811e7a60141003ab762 https://www.encodeproject.org/files/ENCFF836OQZ/@@download/ENCFF836OQZ.bam released s3://encode-public/2017/02/02/fbda827c-96c1-4d8c-80a2-a1074be7a02c/ENCFF836OQZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF286CKM bam bam alignments GRCh38 ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF920XCV/, /files/ENCFF643CGH/, /files/ENCFF147IQP/ 3110983844 ENCODE Processing Pipeline e4be71559cf90ee7f357fb406e68d5fb https://www.encodeproject.org/files/ENCFF286CKM/@@download/ENCFF286CKM.bam released s3://encode-public/2017/02/02/5d7f4769-74b5-4b2c-b9e5-adce71720aff/ENCFF286CKM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF668VUY bam bam alignments GRCh38 ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF147IQP/, /files/ENCFF920XCV/ 2955119337 ENCODE Processing Pipeline 709418316b386bfbcd9ac2723f91d601 https://www.encodeproject.org/files/ENCFF668VUY/@@download/ENCFF668VUY.bam released s3://encode-public/2020/06/06/af6b5633-5087-48af-8622-f2c44511bc09/ENCFF668VUY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF315GLR bam bam unfiltered alignments GRCh38 ENCSR467YGK Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF147IQP/, /files/ENCFF920XCV/ 4311249570 ENCODE Processing Pipeline 0f70da5f835a0f92abbee680c0ce29f5 https://www.encodeproject.org/files/ENCFF315GLR/@@download/ENCFF315GLR.bam released s3://encode-public/2020/06/06/68d8a284-6234-4e6f-b0dc-33ab88d2c390/ENCFF315GLR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF211OQN fastq fastq reads ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 167666774 Michael Snyder, Stanford 8c9b17c5d0a84605ae5763bc89b97174 https://www.encodeproject.org/files/ENCFF211OQN/@@download/ENCFF211OQN.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/58300aca-9620-4cce-ab70-5737ab98e6d7/ENCFF211OQN.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF513DAP fastq fastq reads ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 229484611 Michael Snyder, Stanford 7fd2b2f16b74fe1f30a41c9902e1ea07 https://www.encodeproject.org/files/ENCFF513DAP/@@download/ENCFF513DAP.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/4c9bf59d-24fa-4296-9898-4ac1e8f32f97/ENCFF513DAP.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF298LHN bigWig bigWig read-depth normalized signal ce10 ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF200VDH/ 9995888 Kevin White, UChicago 0ef87ea2aeb483bd8f6cd3973143871e https://www.encodeproject.org/files/ENCFF298LHN/@@download/ENCFF298LHN.bigWig released s3://encode-public/2017/09/28/4f09808f-2b24-45c9-936f-997a0cc206f1/ENCFF298LHN.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF925SJP bam bam alignments ce11 ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF586MOL/, /files/ENCFF513DAP/, /files/ENCFF211OQN/ 470529590 Kevin White, UChicago 702962c577544d59e7fdbdde4bc223bb https://www.encodeproject.org/files/ENCFF925SJP/@@download/ENCFF925SJP.bam released s3://encode-public/2017/09/28/01314b2a-cb80-4928-892b-458b6378e3c5/ENCFF925SJP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF513ENS bigWig bigWig signal of unique reads ce11 ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF925SJP/ 10049694 Kevin White, UChicago 54e5bf9b92211dbd449cfe72f96c9eb1 https://www.encodeproject.org/files/ENCFF513ENS/@@download/ENCFF513ENS.bigWig released s3://encode-public/2017/09/28/2372e99c-c445-4f44-b7f2-c8863422dc64/ENCFF513ENS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF386IIX bigWig bigWig read-depth normalized signal ce11 ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF925SJP/ 9998622 Kevin White, UChicago 9244f1ae6e83383bb94c56f0782a6760 https://www.encodeproject.org/files/ENCFF386IIX/@@download/ENCFF386IIX.bigWig released s3://encode-public/2017/09/28/1b83e2e8-3a75-4e9e-843a-38c7b473f691/ENCFF386IIX.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF829XTO bigWig bigWig signal of unique reads ce10 ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF200VDH/ 10048099 Kevin White, UChicago d705aacc52a7f22ee39cc2e98b786ff4 https://www.encodeproject.org/files/ENCFF829XTO/@@download/ENCFF829XTO.bigWig released s3://encode-public/2017/09/28/de6f1fca-7bf4-430b-9c67-a0299d06c071/ENCFF829XTO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF200VDH bam bam alignments ce10 ENCSR454PLL Control ChIP-seq /worm-donors/ENCDO831LCY/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181312/'], '@type': ['Target', 'Item'], 'name': 'C34F6.9-celegans', 'label': 'C34F6.9', '@id': '/targets/C34F6.9-celegans/', 'title': 'C34F6.9 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': 'eff8a31f-7521-46ea-a279-434f1288b126', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF987UMF/, /files/ENCFF513DAP/, /files/ENCFF211OQN/ 470129465 Kevin White, UChicago 2decb089efad5dcc4d6b601803db9f64 https://www.encodeproject.org/files/ENCFF200VDH/@@download/ENCFF200VDH.bam released s3://encode-public/2017/09/28/07f14a99-5763-4d61-80a8-71ac44c47c18/ENCFF200VDH.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF800FCF fastq fastq reads ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 122587408 Michael Snyder, Stanford 4b3b4e2f718ca5962c4136ad3321e6cc https://www.encodeproject.org/files/ENCFF800FCF/@@download/ENCFF800FCF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/7cee3c0f-9d8b-4198-8bdb-7a5bca320837/ENCFF800FCF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF408CBT fastq fastq reads ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 119818860 Michael Snyder, Stanford f2c28380323deea509032a8112463b01 https://www.encodeproject.org/files/ENCFF408CBT/@@download/ENCFF408CBT.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2bda3688-3578-408e-a2c6-e8f9c03dd2b0/ENCFF408CBT.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF823AVP bam bam alignments ce10 ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF800FCF/, /files/ENCFF408CBT/, /files/ENCFF987UMF/ 317118332 Kevin White, UChicago 020277782adbba03281e52fde29fec63 https://www.encodeproject.org/files/ENCFF823AVP/@@download/ENCFF823AVP.bam released s3://encode-public/2016/10/18/918e884c-10c3-47e1-a359-bef8c37163ef/ENCFF823AVP.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF346CKL bam bam alignments ce11 ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF800FCF/, /files/ENCFF408CBT/, /files/ENCFF586MOL/ 317450220 Kevin White, UChicago c25dff1a14601bc0e917f7bc8548c27a https://www.encodeproject.org/files/ENCFF346CKL/@@download/ENCFF346CKL.bam released s3://encode-public/2016/10/19/010da8ff-875c-424c-80c4-8b04683ed02b/ENCFF346CKL.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF367EHA bigWig bigWig signal of unique reads ce10 ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF823AVP/ 10063655 Kevin White, UChicago 9db240a189d4857b8082d166c29a3784 https://www.encodeproject.org/files/ENCFF367EHA/@@download/ENCFF367EHA.bigWig released s3://encode-public/2016/10/20/5bbf97ea-3ec9-4a89-8aae-076e6cb4bd55/ENCFF367EHA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF265BIZ bigWig bigWig read-depth normalized signal ce10 ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF823AVP/ 10017284 Kevin White, UChicago 1e301d0c7cf45ae425b658bc1465275e https://www.encodeproject.org/files/ENCFF265BIZ/@@download/ENCFF265BIZ.bigWig released s3://encode-public/2016/10/20/20c2b8a7-8fbe-4b7e-b5ce-ae7876488f24/ENCFF265BIZ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF823ARK bigWig bigWig signal of unique reads ce11 ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF346CKL/ 10068674 Kevin White, UChicago 51d611de918a6ae93443bbee8d310029 https://www.encodeproject.org/files/ENCFF823ARK/@@download/ENCFF823ARK.bigWig released s3://encode-public/2016/10/21/dd6d4160-fe39-4e41-9c61-02b5b77a3b6c/ENCFF823ARK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF137TVK bigWig bigWig read-depth normalized signal ce11 ENCSR435IYX Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF346CKL/ 10014284 Kevin White, UChicago 304ef095655d7ccb1ec09a1c7bbe7e3b https://www.encodeproject.org/files/ENCFF137TVK/@@download/ENCFF137TVK.bigWig released s3://encode-public/2016/10/21/f972ec06-26fa-4e1a-b030-a99130988632/ENCFF137TVK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF061TNK fastq fastq reads ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 107614151 Michael Snyder, Stanford c01cf8df11bc86285c8523fccb351655 https://www.encodeproject.org/files/ENCFF061TNK/@@download/ENCFF061TNK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/2cad2692-b81d-4858-b4f9-fa4d7e7d0348/ENCFF061TNK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF974NLE fastq fastq reads ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 84747431 Michael Snyder, Stanford 714551d78ca71e3bf0e553bdc2e610e8 https://www.encodeproject.org/files/ENCFF974NLE/@@download/ENCFF974NLE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/e23c8c00-b5ee-4c14-8188-083c67f60396/ENCFF974NLE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF382TLU bam bam alignments ce10 ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF061TNK/, /files/ENCFF974NLE/, /files/ENCFF987UMF/ 238214190 Kevin White, UChicago 6e6ac422fd3b69640151715fb83c4ff4 https://www.encodeproject.org/files/ENCFF382TLU/@@download/ENCFF382TLU.bam released s3://encode-public/2016/10/18/0cf8b6d9-520d-43ea-b4b8-600b5d6d78a8/ENCFF382TLU.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF291HCM bam bam alignments ce11 ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF061TNK/, /files/ENCFF974NLE/, /files/ENCFF586MOL/ 238432367 Kevin White, UChicago 2f9d6eb59ff5e5b42ebc83dd9d511c90 https://www.encodeproject.org/files/ENCFF291HCM/@@download/ENCFF291HCM.bam released s3://encode-public/2016/10/18/e5f5f3da-ac99-4e3f-a9a4-6f730fff1e19/ENCFF291HCM.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF324RDU bigWig bigWig signal of unique reads ce10 ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF382TLU/ 9969759 Kevin White, UChicago 1db173ac9a3d8c1f7686fc5ce16b6c65 https://www.encodeproject.org/files/ENCFF324RDU/@@download/ENCFF324RDU.bigWig released s3://encode-public/2016/10/20/9624ffe3-baf8-40cd-acf5-a6d12300cb41/ENCFF324RDU.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF519YZI bigWig bigWig read-depth normalized signal ce10 ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF382TLU/ 9962351 Kevin White, UChicago ab1821583c46b5848174f80ef8f764e0 https://www.encodeproject.org/files/ENCFF519YZI/@@download/ENCFF519YZI.bigWig released s3://encode-public/2016/10/20/9250b66c-c6ba-4cfb-b9ac-a5cdab018281/ENCFF519YZI.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF701NEW bigWig bigWig signal of unique reads ce11 ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF291HCM/ 9959877 Kevin White, UChicago 698782c83fdf0b39b9ea500af3950b4d https://www.encodeproject.org/files/ENCFF701NEW/@@download/ENCFF701NEW.bigWig released s3://encode-public/2016/10/20/b827b324-908b-489b-9e03-a2c81d748c4c/ENCFF701NEW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF230IIZ bigWig bigWig read-depth normalized signal ce11 ENCSR143YHO Control ChIP-seq /worm-donors/ENCDO786FJI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177144/'], '@type': ['Target', 'Item'], 'name': 'zag-1-celegans', 'label': 'zag-1', '@id': '/targets/zag-1-celegans/', 'title': 'zag-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '855e76b9-5d52-4d16-ad66-8a329ec8cb23', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF291HCM/ 9957718 Kevin White, UChicago 658c8c78d931a51066f1a045fc8edb08 https://www.encodeproject.org/files/ENCFF230IIZ/@@download/ENCFF230IIZ.bigWig released s3://encode-public/2016/10/20/3d3881ab-35a5-4850-93ec-0eaa86affa94/ENCFF230IIZ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF691VFA fastq fastq reads ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 81029460 Michael Snyder, Stanford 0a1d673bcc88ec7c65ea6cb767b700e7 https://www.encodeproject.org/files/ENCFF691VFA/@@download/ENCFF691VFA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/39d42960-c5ac-40fd-aa35-ff0258e94cb6/ENCFF691VFA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF530TQX fastq fastq reads ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 123507819 Michael Snyder, Stanford 88e9c4e710532988bca91026b4756b7a https://www.encodeproject.org/files/ENCFF530TQX/@@download/ENCFF530TQX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/dd457278-3dcb-4020-acfa-7e35a10cc51f/ENCFF530TQX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF482QBI fastq fastq reads ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 107880060 Michael Snyder, Stanford 940750198d3fe4c2b2d772c1400300ec https://www.encodeproject.org/files/ENCFF482QBI/@@download/ENCFF482QBI.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/0a456772-7d62-4a79-82f5-5aed748f6b25/ENCFF482QBI.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF385BBV fastq fastq reads ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 75523975 Michael Snyder, Stanford 15ff5fc5e848a388b8cff2137ff992c7 https://www.encodeproject.org/files/ENCFF385BBV/@@download/ENCFF385BBV.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ba7d835c-016b-48f4-915f-9cd180a20d29/ENCFF385BBV.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF563MSC bam bam alignments ce10 ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF691VFA/, /files/ENCFF385BBV/, /files/ENCFF530TQX/, /files/ENCFF482QBI/, /files/ENCFF987UMF/ 479931723 Kevin White, UChicago 7cf3f462c4ff9b73b13cb7294733706c https://www.encodeproject.org/files/ENCFF563MSC/@@download/ENCFF563MSC.bam released s3://encode-public/2016/10/18/2c6a3b05-627b-41e9-8058-780fcc96e4d3/ENCFF563MSC.bam Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF510GGP bam bam alignments ce11 ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF691VFA/, /files/ENCFF385BBV/, /files/ENCFF530TQX/, /files/ENCFF482QBI/, /files/ENCFF586MOL/ 480430143 Kevin White, UChicago dffda5118f134defa5a9822790e269fc https://www.encodeproject.org/files/ENCFF510GGP/@@download/ENCFF510GGP.bam released s3://encode-public/2016/10/18/c647307a-215e-474a-91fa-ea4ed6f15bdb/ENCFF510GGP.bam Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF159AGZ bigWig bigWig read-depth normalized signal ce10 ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF563MSC/ 9960588 Kevin White, UChicago 45859413adaa1bba27bed62dd04138df https://www.encodeproject.org/files/ENCFF159AGZ/@@download/ENCFF159AGZ.bigWig released s3://encode-public/2016/10/20/5dd2c8d6-f2be-4292-b621-2aeeb3f4d94a/ENCFF159AGZ.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF286ESR bigWig bigWig signal of unique reads ce10 ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF563MSC/ 9990881 Kevin White, UChicago 2af948efa0d74cf39800e0775c59c641 https://www.encodeproject.org/files/ENCFF286ESR/@@download/ENCFF286ESR.bigWig released s3://encode-public/2016/10/20/4cfbf145-2c5d-4bbd-887a-b16600794942/ENCFF286ESR.bigWig Lab custom ce10 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF050QJZ bigWig bigWig signal of unique reads ce11 ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF510GGP/ 9987204 Kevin White, UChicago d9ba31346ea2d11508cfc338f726e2b4 https://www.encodeproject.org/files/ENCFF050QJZ/@@download/ENCFF050QJZ.bigWig released s3://encode-public/2016/10/21/3164dcb0-b7ff-4b4b-aaf6-2c32bbef2598/ENCFF050QJZ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF529LSQ bigWig bigWig read-depth normalized signal ce11 ENCSR796BPI Control ChIP-seq /worm-donors/ENCDO310XPS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178845/'], '@type': ['Target', 'Item'], 'name': 'unc-62-celegans', 'label': 'unc-62', '@id': '/targets/unc-62-celegans/', 'title': 'unc-62 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '144d5ea7-9f4d-4a1f-a99e-a04f4ed14ba1', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF510GGP/ 9954867 Kevin White, UChicago 158051064593bfba3819874a1799ff69 https://www.encodeproject.org/files/ENCFF529LSQ/@@download/ENCFF529LSQ.bigWig released s3://encode-public/2016/10/21/542bbfa3-a3a6-45b0-93b2-c6260632dbb3/ENCFF529LSQ.bigWig Lab custom ce11 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF169MFM bam bam alignments ce10 ENCSR713MAY Control ChIP-seq /worm-donors/ENCDO307ERI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175149/'], '@type': ['Target', 'Item'], 'name': 'cog-1-celegans', 'label': 'cog-1', '@id': '/targets/cog-1-celegans/', 'title': 'cog-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0ccc8121-b693-46ce-8762-9ee6df953336', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF262DWN/ 1029073508 Kevin White, UChicago d76cb6580e7e32480ed23222c73d5dcf https://www.encodeproject.org/files/ENCFF169MFM/@@download/ENCFF169MFM.bam released s3://encode-public/2015/08/19/f38a520b-ae6d-49c3-b8f7-ccc8b266ccef/ENCFF169MFM.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF262DWN fastq fastq reads ENCSR713MAY Control ChIP-seq /worm-donors/ENCDO307ERI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175149/'], '@type': ['Target', 'Item'], 'name': 'cog-1-celegans', 'label': 'cog-1', '@id': '/targets/cog-1-celegans/', 'title': 'cog-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0ccc8121-b693-46ce-8762-9ee6df953336', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 871995097 Kevin White, UChicago 58aaf6206a49b7c0944ecb82c22b16a1 https://www.encodeproject.org/files/ENCFF262DWN/@@download/ENCFF262DWN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/08/24/c973a249-3337-475e-a7c9-5c9088afb28e/ENCFF262DWN.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF598RUJ bigWig bigWig signal of unique reads ce10 ENCSR713MAY Control ChIP-seq /worm-donors/ENCDO307ERI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175149/'], '@type': ['Target', 'Item'], 'name': 'cog-1-celegans', 'label': 'cog-1', '@id': '/targets/cog-1-celegans/', 'title': 'cog-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0ccc8121-b693-46ce-8762-9ee6df953336', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF169MFM/ 9975735 Kevin White, UChicago ab8eab8a779e343ac415547b363ee19b https://www.encodeproject.org/files/ENCFF598RUJ/@@download/ENCFF598RUJ.bigWig released s3://encode-public/2015/10/02/2e262ad1-d752-4424-a19b-c013425ec606/ENCFF598RUJ.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF733BOT bigWig bigWig read-depth normalized signal ce10 ENCSR713MAY Control ChIP-seq /worm-donors/ENCDO307ERI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175149/'], '@type': ['Target', 'Item'], 'name': 'cog-1-celegans', 'label': 'cog-1', '@id': '/targets/cog-1-celegans/', 'title': 'cog-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0ccc8121-b693-46ce-8762-9ee6df953336', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF169MFM/ 10017951 Kevin White, UChicago 119a371f4460e58954fe5a1dbd5ca1a0 https://www.encodeproject.org/files/ENCFF733BOT/@@download/ENCFF733BOT.bigWig released s3://encode-public/2015/10/02/e00018fa-5b86-45a7-9653-d74a9a5b4338/ENCFF733BOT.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF052DDU bam bam alignments ce11 ENCSR713MAY Control ChIP-seq /worm-donors/ENCDO307ERI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175149/'], '@type': ['Target', 'Item'], 'name': 'cog-1-celegans', 'label': 'cog-1', '@id': '/targets/cog-1-celegans/', 'title': 'cog-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0ccc8121-b693-46ce-8762-9ee6df953336', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF262DWN/ 1029888763 Kevin White, UChicago a391a8cb541fff4e61a10ca059a9b5fd https://www.encodeproject.org/files/ENCFF052DDU/@@download/ENCFF052DDU.bam released s3://encode-public/2016/01/16/b88aac44-3e2b-45a8-bc62-e3680dcd66cc/ENCFF052DDU.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF556EMN bigWig bigWig signal of unique reads ce11 ENCSR713MAY Control ChIP-seq /worm-donors/ENCDO307ERI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175149/'], '@type': ['Target', 'Item'], 'name': 'cog-1-celegans', 'label': 'cog-1', '@id': '/targets/cog-1-celegans/', 'title': 'cog-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0ccc8121-b693-46ce-8762-9ee6df953336', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF052DDU/ 9975509 Kevin White, UChicago 6246f45921b89cb3725a6e367d5c6805 https://www.encodeproject.org/files/ENCFF556EMN/@@download/ENCFF556EMN.bigWig released s3://encode-public/2016/02/03/3a39e887-f926-44ea-b3ab-fe6b4ab20bc6/ENCFF556EMN.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF525ZQD bigWig bigWig read-depth normalized signal ce11 ENCSR713MAY Control ChIP-seq /worm-donors/ENCDO307ERI/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175149/'], '@type': ['Target', 'Item'], 'name': 'cog-1-celegans', 'label': 'cog-1', '@id': '/targets/cog-1-celegans/', 'title': 'cog-1 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '0ccc8121-b693-46ce-8762-9ee6df953336', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF052DDU/ 10021236 Kevin White, UChicago 02269b533f32571f087d33485bb57dbe https://www.encodeproject.org/files/ENCFF525ZQD/@@download/ENCFF525ZQD.bigWig released s3://encode-public/2016/02/03/e0ce7b6a-b800-4a26-bd40-342458f2037b/ENCFF525ZQD.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF000QER bam bam alignments hg19 ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF000QEX/ 511149753 Richard Myers, HAIB ff6979ace9befe82e71b6a05609d36e1 https://www.encodeproject.org/files/ENCFF000QER/@@download/ENCFF000QER.bam archived s3://encode-public/2012/01/23/faee9906-b07a-401b-be38-cd091adb2e6d/ENCFF000QER.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000QES bam bam alignments hg19 ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF000QEZ/ 753056647 Richard Myers, HAIB 0e39315b965ce53119fda74a9aab8e42 https://www.encodeproject.org/files/ENCFF000QES/@@download/ENCFF000QES.bam archived s3://encode-public/2012/01/23/687e0e46-0bcc-4bd7-93f3-ac0b2432e92e/ENCFF000QES.bam Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000QEV bigWig bigWig raw signal hg19 ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 2724661 Richard Myers, HAIB fa20b05ea082dcb063463b73b6a5af2f https://www.encodeproject.org/files/ENCFF000QEV/@@download/ENCFF000QEV.bigWig archived s3://encode-public/2012/01/23/36424933-49b0-4313-a455-1cae31b9a2d5/ENCFF000QEV.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000QEW bigWig bigWig raw signal hg19 ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 1629716 Richard Myers, HAIB 1e2967cfc1b93b23fea86ed0a36e699c https://www.encodeproject.org/files/ENCFF000QEW/@@download/ENCFF000QEW.bigWig archived s3://encode-public/2012/01/23/ca9a6bb4-ea3b-4f64-85b2-fbae60604d88/ENCFF000QEW.bigWig Lab custom hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000QEX fastq fastq reads ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 single-ended 440333001 Richard Myers, HAIB 586e7d4c51a197911d60b56592c41d8a https://www.encodeproject.org/files/ENCFF000QEX/@@download/ENCFF000QEX.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2012/01/23/589050b9-a044-4a1b-acb6-c5bf97c9298a/ENCFF000QEX.fastq.gz mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF000QEZ fastq fastq reads ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000QEZ/ 861414891 ENCODE Processing Pipeline cd91622422f98a2aaa920b3294c8b54d https://www.encodeproject.org/files/ENCFF483UTO/@@download/ENCFF483UTO.bam released s3://encode-public/2016/11/13/069555d9-5cdf-43de-80f9-166a3996085a/ENCFF483UTO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF750MIM bam bam alignments hg19 ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000QEX/ 337026840 ENCODE Processing Pipeline 9bfb32f7269288e26383652744693b61 https://www.encodeproject.org/files/ENCFF750MIM/@@download/ENCFF750MIM.bam released s3://encode-public/2016/11/13/16294f26-7a97-46ef-9824-d4de92415ef6/ENCFF750MIM.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF139VMV bam bam unfiltered alignments GRCh38 ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000QEX/ 589984110 ENCODE Processing Pipeline 4af7b618dfb77a8c3f009433f908f977 https://www.encodeproject.org/files/ENCFF139VMV/@@download/ENCFF139VMV.bam released s3://encode-public/2020/10/28/766d3482-d8ad-4923-ae07-da10aa4cd643/ENCFF139VMV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, low read depth, low read length insufficient read depth ENCFF423WGF bam bam unfiltered alignments GRCh38 ENCSR000BLJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-07-18 ENCODE see document 2 2_1 36 /files/ENCFF110MCL/, /files/ENCFF000QEZ/ 841308960 ENCODE Processing Pipeline 51dd4fd47cb7952872e6238238af9784 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 34 /files/ENCFF000YRB/ 546568510 Michael Snyder, Stanford 40acbbfce8cec717407ed6c05e92e53c https://www.encodeproject.org/files/ENCFF000YQR/@@download/ENCFF000YQR.bam archived s3://encode-public/2012/07/01/04b17662-9583-43b6-9c4d-e4bb5f613d58/ENCFF000YQR.bam Lab custom hg19 archived low read length ENCFF000YRB fastq fastq reads ENCSR000EHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 1889660755 Michael Snyder, Stanford 6cf173c8052269f41153e01b1d1183b0 https://www.encodeproject.org/files/ENCFF000YRB/@@download/ENCFF000YRB.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/f2b974fb-ca3d-442d-a9a2-5751f5e1179c/ENCFF000YRB.fastq.gz low read length ENCFF995QWY bam bam unfiltered alignments GRCh38 ENCSR000EHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000YRB/ 2184948133 ENCODE Processing Pipeline eccf605e4b557045b49ba9b6d24ca9ff https://www.encodeproject.org/files/ENCFF995QWY/@@download/ENCFF995QWY.bam released s3://encode-public/2016/07/28/af691fc7-eace-459a-8cad-6b51fd4ac8e1/ENCFF995QWY.bam ENCODE3 GRCh38 archived low read length ENCFF023NGN bam bam alignments GRCh38 ENCSR000EHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000YRB/ 1195218699 ENCODE Processing Pipeline 7641cc18d3cfe949159033975b5be4bd https://www.encodeproject.org/files/ENCFF023NGN/@@download/ENCFF023NGN.bam released s3://encode-public/2016/07/28/c5c2d4b8-e44e-405a-8892-ec06ac52c388/ENCFF023NGN.bam ENCODE3 GRCh38 archived low read length ENCFF710NTS bam bam alignments hg19 ENCSR000EHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000YRB/ 1195582918 ENCODE Processing Pipeline 6cff40c9ac06fcc00f315a64b3f3f4e0 https://www.encodeproject.org/files/ENCFF710NTS/@@download/ENCFF710NTS.bam released s3://encode-public/2016/08/23/a848ab71-e612-4acc-89ac-3e98028093a8/ENCFF710NTS.bam ENCODE3 hg19 archived low read length ENCFF530AIY bam bam unfiltered alignments hg19 ENCSR000EHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000YRB/ 2174752822 ENCODE Processing Pipeline af6da4baa81e46e6f398ce843ab88309 https://www.encodeproject.org/files/ENCFF530AIY/@@download/ENCFF530AIY.bam released s3://encode-public/2016/08/23/397d5260-3594-486f-bdf8-a0a1daec04e8/ENCFF530AIY.bam ENCODE3 hg19 archived low read length ENCFF083IVF bam bam unfiltered alignments GRCh38 ENCSR000EHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000YRB/, /files/ENCFF110MCL/ 2159952205 ENCODE Processing Pipeline f93303f402961d1d3c3b41a3b437d115 https://www.encodeproject.org/files/ENCFF083IVF/@@download/ENCFF083IVF.bam released s3://encode-public/2020/09/03/0503827e-116e-41f7-9c07-b3de0187b54c/ENCFF083IVF.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF396DTD bam bam alignments GRCh38 ENCSR000EHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF000YRB/, /files/ENCFF110MCL/ 1290465074 ENCODE Processing Pipeline a060abb4e093fdd18455337f9edf7440 https://www.encodeproject.org/files/ENCFF396DTD/@@download/ENCFF396DTD.bam released s3://encode-public/2020/09/03/a75b7086-4552-49da-a4f2-fc02ad3fa66f/ENCFF396DTD.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF654QQV fastq fastq reads ENCSR956GFH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-730'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/197320/'], '@type': ['Target', 'Item'], 'name': 'ZNF778-human', 'label': 'ZNF778', '@id': '/targets/ZNF778-human/', 'title': 'ZNF778 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef754bbb-e98e-4ffc-b4fb-3b2cb401cf42', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF177QOT/ 2541287481 Michael Snyder, Stanford a82818940cb799c683feee81d075aa26 https://www.encodeproject.org/files/ENCFF654QQV/@@download/ENCFF654QQV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/a1da2cae-14f1-4aef-a621-863031fb782e/ENCFF654QQV.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF177QOT fastq fastq reads ENCSR956GFH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-730'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/197320/'], '@type': ['Target', 'Item'], 'name': 'ZNF778-human', 'label': 'ZNF778', '@id': '/targets/ZNF778-human/', 'title': 'ZNF778 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef754bbb-e98e-4ffc-b4fb-3b2cb401cf42', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF654QQV/ 2217608368 Michael Snyder, Stanford 46c447a7ceef4da5b296a231505dcda0 https://www.encodeproject.org/files/ENCFF177QOT/@@download/ENCFF177QOT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/692c4b7d-1d95-44ad-877d-266818696440/ENCFF177QOT.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF670OOV bam bam unfiltered alignments GRCh38 ENCSR956GFH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-730'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/197320/'], '@type': ['Target', 'Item'], 'name': 'ZNF778-human', 'label': 'ZNF778', '@id': '/targets/ZNF778-human/', 'title': 'ZNF778 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef754bbb-e98e-4ffc-b4fb-3b2cb401cf42', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF177QOT/, /files/ENCFF654QQV/ 4302078248 ENCODE Processing Pipeline 6d99cbf801f0f35c4a99a9364d3297fb https://www.encodeproject.org/files/ENCFF670OOV/@@download/ENCFF670OOV.bam released s3://encode-public/2020/04/21/d5175fa2-bcba-4766-b065-6eff5573ef2e/ENCFF670OOV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF476NFG bam bam alignments GRCh38 ENCSR956GFH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-730'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/197320/'], '@type': ['Target', 'Item'], 'name': 'ZNF778-human', 'label': 'ZNF778', '@id': '/targets/ZNF778-human/', 'title': 'ZNF778 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ef754bbb-e98e-4ffc-b4fb-3b2cb401cf42', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF177QOT/, /files/ENCFF654QQV/ 2936132255 ENCODE Processing Pipeline 841e7e5927abf6ed6a822da44e92f345 https://www.encodeproject.org/files/ENCFF476NFG/@@download/ENCFF476NFG.bam released s3://encode-public/2020/04/21/b5e5dbdf-3020-4219-af18-646f09d60670/ENCFF476NFG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF830MZV fastq fastq reads ENCSR194QBX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1871/'], '@type': ['Target', 'Item'], 'name': 'E2F3-human', 'label': 'E2F3', '@id': '/targets/E2F3-human/', 'title': 'E2F3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be015b4a-972b-47c8-afb7-5e395199ea23', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF830MZV/, /files/ENCFF313BUU/ 4400027375 ENCODE Processing Pipeline eb0fdb7a2a3237c3657e5891ba02a523 https://www.encodeproject.org/files/ENCFF021LMW/@@download/ENCFF021LMW.bam released s3://encode-public/2020/05/15/b25442a4-4001-4a98-81b8-5f3cbef6ebce/ENCFF021LMW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF457PLY bam bam alignments GRCh38 ENCSR194QBX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1871/'], '@type': ['Target', 'Item'], 'name': 'E2F3-human', 'label': 'E2F3', '@id': '/targets/E2F3-human/', 'title': 'E2F3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be015b4a-972b-47c8-afb7-5e395199ea23', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF830MZV/, /files/ENCFF313BUU/ 3385687467 ENCODE Processing Pipeline f88b185e0bc30aae5a91c62dd6c0f2dc https://www.encodeproject.org/files/ENCFF457PLY/@@download/ENCFF457PLY.bam released s3://encode-public/2020/05/15/e9ace5d3-4f7a-438e-83e5-ba184e0b8a16/ENCFF457PLY.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF800RPR tagAlign tagAlign alignments hg19 ENCSR143DQF Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 /files/SRR1270532/, /files/SRR1270587/, /files/SRR1270441/ 234559182 Anshul Kundaje, Stanford 52aadf00d77d426f20659c04d5aa4eeb https://www.encodeproject.org/files/ENCFF800RPR/@@download/ENCFF800RPR.tagAlign.gz archived s3://encode-public/2016/03/30/5fcdd647-06f4-4276-9397-e2d645594273/ENCFF800RPR.tagAlign.gz Lab custom hg19 archived low read length ENCFF035QBB bam bam redacted unfiltered alignments GRCh38 ENCSR143DQF Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF121JIP/, /files/ENCFF643CGH/, /files/ENCFF144GRV/, /files/ENCFF220ZIH/ 465713764 ENCODE Processing Pipeline 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/files/ENCFF807MUK/, /files/ENCFF144GRV/, /files/ENCFF220ZIH/ 202138501 ENCODE Processing Pipeline 36fa2ca1f85b8e51ef112f6b8d16511a https://www.encodeproject.org/files/ENCFF737WXH/@@download/ENCFF737WXH.bam released s3://encode-public/2018/01/20/ce14cbea-82d0-4f7b-a289-16ba1c2b8503/ENCFF737WXH.bam ENCODE3 hg19 archived low read length ENCFF451GUA bam bam redacted unfiltered alignments hg19 ENCSR143DQF Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF121JIP/, /files/ENCFF807MUK/, /files/ENCFF144GRV/, /files/ENCFF220ZIH/ 306885877 ENCODE Processing Pipeline 2aad9240784c4a25bafef5b241ed238e https://www.encodeproject.org/files/ENCFF451GUA/@@download/ENCFF451GUA.bam released s3://encode-public/2018/01/20/4da09df0-8d87-465b-9416-bba76eb33721/ENCFF451GUA.bam ENCODE3 hg19 archived low read length ENCFF952LAO bam bam redacted alignments GRCh38 ENCSR143DQF Control ChIP-seq /human-donors/ENCDO980BZD/ UBERON:0002967 cingulate gyrus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_3 36 /files/ENCFF393XVH/, /files/ENCFF947QTY/, /files/ENCFF749RGX/, /files/ENCFF110MCL/ 1312656045 ENCODE Processing Pipeline 6680f5db184a42b1ab136e3307c995e0 https://www.encodeproject.org/files/ENCFF952LAO/@@download/ENCFF952LAO.bam released s3://encode-public/2021/01/28/571b32c7-7f5f-43c6-9200-2630d5fa782a/ENCFF952LAO.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF949OME fastq fastq reads ENCSR444SQF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5467/'], '@type': ['Target', 'Item'], 'name': 'PPARD-human', 'label': 'PPARD', '@id': '/targets/PPARD-human/', 'title': 'PPARD (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '97064146-4e18-4b77-91bc-aec1fccef1f4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF439GSQ/ 2335907582 Michael Snyder, Stanford 0662c0992fdd9c0c868e2e41e6a08ac9 https://www.encodeproject.org/files/ENCFF949OME/@@download/ENCFF949OME.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/1569507c-0144-4028-af1c-77029fa7668c/ENCFF949OME.fastq.gz mild to moderate bottlenecking, moderate library complexity missing compliant biosample characterization ENCFF439GSQ fastq fastq reads ENCSR444SQF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': 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biosample characterization ENCFF465IED bam bam unfiltered alignments GRCh38 ENCSR444SQF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/5467/'], '@type': ['Target', 'Item'], 'name': 'PPARD-human', 'label': 'PPARD', '@id': '/targets/PPARD-human/', 'title': 'PPARD (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '97064146-4e18-4b77-91bc-aec1fccef1f4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF439GSQ/, /files/ENCFF949OME/ 3916947061 ENCODE Processing Pipeline d5cd1adc7881003e8a632f4afeed0978 https://www.encodeproject.org/files/ENCFF465IED/@@download/ENCFF465IED.bam released s3://encode-public/2020/04/21/910e260f-8fc2-46e5-ad8b-11729d83c07f/ENCFF465IED.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity missing compliant biosample characterization ENCFF344MAD fastq fastq reads ENCSR525VRV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-745'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/169841/'], '@type': ['Target', 'Item'], 'name': 'ZNF169-human', 'label': 'ZNF169', '@id': '/targets/ZNF169-human/', 'title': 'ZNF169 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0bb68080-0f6c-4cc4-8119-79bdcd42fbef', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF277MBG/ 2676496629 Michael Snyder, Stanford 2a977355d4a233bdc80fff422024631d SRA:SRR14105480 https://www.encodeproject.org/files/ENCFF344MAD/@@download/ENCFF344MAD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/259c48e8-d413-4508-9c1a-815db2fb26af/ENCFF344MAD.fastq.gz mild to moderate bottlenecking ENCFF277MBG fastq fastq reads ENCSR525VRV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-745'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/169841/'], '@type': ['Target', 'Item'], 'name': 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'@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/169841/'], '@type': ['Target', 'Item'], 'name': 'ZNF169-human', 'label': 'ZNF169', '@id': '/targets/ZNF169-human/', 'title': 'ZNF169 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '0bb68080-0f6c-4cc4-8119-79bdcd42fbef', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF344MAD/, /files/ENCFF277MBG/ 5196275780 ENCODE Processing Pipeline a8db8e88a02ae566c6663e4de1a58039 https://www.encodeproject.org/files/ENCFF510HRQ/@@download/ENCFF510HRQ.bam released s3://encode-public/2020/05/15/c058e8ec-0f4d-4fa1-a71e-1c69c2e399e1/ENCFF510HRQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF039SEA bam bam alignments GRCh38 ENCSR525VRV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': 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redacted unfiltered alignments GRCh38 ENCSR232ABT Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF740VNQ/ 342002111 ENCODE Processing Pipeline a24588715f9f88b6dafe9ca935840722 https://www.encodeproject.org/files/ENCFF504IXT/@@download/ENCFF504IXT.bam released s3://encode-public/2017/11/09/22176760-a0af-49d8-8118-bb6437ce872c/ENCFF504IXT.bam ENCODE3 GRCh38 archived ENCFF615OYK bam bam redacted alignments GRCh38 ENCSR232ABT Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF740VNQ/ 282986744 ENCODE Processing Pipeline 9670f901c73fe2fbfb871754744477bc https://www.encodeproject.org/files/ENCFF615OYK/@@download/ENCFF615OYK.bam released s3://encode-public/2017/11/09/34437969-d9cc-487c-b87d-d3a002ebdf05/ENCFF615OYK.bam ENCODE3 GRCh38 archived ENCFF019XUS bam bam redacted alignments hg19 ENCSR232ABT Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF740VNQ/ 282634063 ENCODE Processing Pipeline 77e0db593885e077f0e2519c77fe3420 https://www.encodeproject.org/files/ENCFF019XUS/@@download/ENCFF019XUS.bam released s3://encode-public/2018/01/20/02d66aee-226e-4ccd-8c42-5542484ec36d/ENCFF019XUS.bam ENCODE3 hg19 archived ENCFF588BUY bam bam redacted unfiltered alignments hg19 ENCSR232ABT Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF740VNQ/ 336229990 ENCODE Processing Pipeline 0ea345f97d3a545d77c0b0af6791a48a https://www.encodeproject.org/files/ENCFF588BUY/@@download/ENCFF588BUY.bam released s3://encode-public/2018/01/20/548c0731-a33a-4b03-a6fd-2a45e8d40a42/ENCFF588BUY.bam ENCODE3 hg19 archived ENCFF429TWA bam bam redacted alignments GRCh38 ENCSR232ABT Control ChIP-seq /human-donors/ENCDO150YZC/ UBERON:0003124 chorion tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF110MCL/, /files/ENCFF708QKJ/ 1809293924 ENCODE Processing Pipeline a2aef353e61bd39fc1c90e8955cb76e6 https://www.encodeproject.org/files/ENCFF429TWA/@@download/ENCFF429TWA.bam released s3://encode-public/2021/01/28/83e0f82a-334d-4b6a-8ace-5c729648d217/ENCFF429TWA.bam ENCODE4 v1.7.0 GRCh38 released ENCFF084KLP fastq fastq reads ENCSR793RRM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79797/'], '@type': ['Target', 'Item'], 'name': 'ZNF408-human', 'label': 'ZNF408', '@id': '/targets/ZNF408-human/', 'title': 'ZNF408 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ed103dde-4ffc-4949-9599-665906011496', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF748NGJ/ 2727177361 Michael Snyder, Stanford c142ea73e36cbd9807fe95714fdc93be SRA:SRR14103871 https://www.encodeproject.org/files/ENCFF084KLP/@@download/ENCFF084KLP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/170fa134-a90a-4c62-8a0b-c555c8b6dc95/ENCFF084KLP.fastq.gz ENCFF748NGJ fastq fastq reads ENCSR793RRM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79797/'], '@type': ['Target', 'Item'], 'name': 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'7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79797/'], '@type': ['Target', 'Item'], 'name': 'ZNF408-human', 'label': 'ZNF408', '@id': '/targets/ZNF408-human/', 'title': 'ZNF408 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ed103dde-4ffc-4949-9599-665906011496', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF084KLP/, /files/ENCFF748NGJ/ 4552102362 ENCODE Processing Pipeline 44bb1af6402b7ff24c2e4260ac38950d https://www.encodeproject.org/files/ENCFF815GAZ/@@download/ENCFF815GAZ.bam released s3://encode-public/2020/04/21/86b00774-88c5-41c7-ac68-e19bd1d70ebb/ENCFF815GAZ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF081TZP bam bam unfiltered alignments GRCh38 ENCSR793RRM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': 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line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF774MDA/ 229199087 Anshul Kundaje, Stanford 79fdb269a5b2a3efc9843ced474e666a https://www.encodeproject.org/files/ENCFF488BFJ/@@download/ENCFF488BFJ.tagAlign.gz archived s3://encode-public/2016/05/02/62a254b8-214f-4e50-bc41-d19ee5dc53e1/ENCFF488BFJ.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF774MDA fastq fastq reads ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 single-ended 1817049854 Zhiping Weng, UMass ac41d7dbdad018652639f7bed2b0ca38 SRA:SRR1068143 https://www.encodeproject.org/files/ENCFF774MDA/@@download/ENCFF774MDA.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/18/c7adaa09-716f-47e5-abab-903c59787d68/ENCFF774MDA.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF238XPO bam bam unfiltered alignments hg19 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF774MDA/, /files/ENCFF807MUK/ 2096616196 ENCODE Processing Pipeline 74202db46e4ed5bba8492ffe041d262a https://www.encodeproject.org/files/ENCFF238XPO/@@download/ENCFF238XPO.bam released s3://encode-public/2016/12/19/bc370f18-a2f6-42b5-b5ba-e33ba49e63e0/ENCFF238XPO.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF339AEL bam bam unfiltered alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF774MDA/, /files/ENCFF643CGH/ 2103925072 ENCODE Processing Pipeline 0b694a4bd02a30f813829293206aeb00 https://www.encodeproject.org/files/ENCFF339AEL/@@download/ENCFF339AEL.bam released s3://encode-public/2016/12/19/6fd51282-b77f-416f-9b64-46057639d2f1/ENCFF339AEL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF559MGV bam bam alignments hg19 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF774MDA/, /files/ENCFF807MUK/ 1462012532 ENCODE Processing Pipeline 83aa74d988d2e62dd3f769e05b6725a0 https://www.encodeproject.org/files/ENCFF559MGV/@@download/ENCFF559MGV.bam released s3://encode-public/2016/12/19/3779d9d3-cbf2-4c17-8a4d-2a402b2a8c6f/ENCFF559MGV.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF700DRM bam bam alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF774MDA/, /files/ENCFF643CGH/ 1461773292 ENCODE Processing Pipeline 5791c7bf2ded1899076bab692569a958 https://www.encodeproject.org/files/ENCFF700DRM/@@download/ENCFF700DRM.bam released s3://encode-public/2016/12/19/01ef6696-14f0-44c2-b02f-849a6ae6c176/ENCFF700DRM.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF660TEM fastq fastq reads ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 76 single-ended 1061542018 Zhiping Weng, UMass 8fab7e6fa000cfcd9387c3a6386685f4 SRA:SRR1118999 https://www.encodeproject.org/files/ENCFF660TEM/@@download/ENCFF660TEM.fastq.gz Illumina Genome Analyzer II released s3://encode-public/2016/10/20/f5528485-8eb9-49b1-a60b-09a7f609b929/ENCFF660TEM.fastq.gz mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF106GES tagAlign tagAlign alignments hg19 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 /files/ENCFF660TEM/ 60498527 Anshul Kundaje, Stanford c84ddfd1458b077e45d3ed5adb17b568 https://www.encodeproject.org/files/ENCFF106GES/@@download/ENCFF106GES.tagAlign.gz archived s3://encode-public/2016/03/30/088c4c88-4f08-4eb0-97a9-3e94fe71bc0d/ENCFF106GES.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF086JBG bam bam unfiltered alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF660TEM/ 689748871 ENCODE Processing Pipeline 9d1eb63d2cf173197d04941b51726aaa https://www.encodeproject.org/files/ENCFF086JBG/@@download/ENCFF086JBG.bam released s3://encode-public/2017/10/20/1428a5ad-8568-4123-8430-f04f541f556a/ENCFF086JBG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF197AJG bam bam alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF660TEM/ 348190612 ENCODE Processing Pipeline 55bb8ad7badaad80dd3cb20e148c6f84 https://www.encodeproject.org/files/ENCFF197AJG/@@download/ENCFF197AJG.bam released s3://encode-public/2017/10/20/45590377-9692-41a5-a3de-c348699054dd/ENCFF197AJG.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF295NRN bam bam unfiltered alignments hg19 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF660TEM/ 688380931 ENCODE Processing Pipeline bf999d6ecce5349ecc8d47ef336de3bf https://www.encodeproject.org/files/ENCFF295NRN/@@download/ENCFF295NRN.bam released s3://encode-public/2017/10/20/442970c6-8c2c-4e79-b6c6-247c4268f786/ENCFF295NRN.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF700HST bam bam alignments hg19 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF660TEM/ 348330768 ENCODE Processing Pipeline caa8ebb4d9ce5831ecb18d59ea4daafc https://www.encodeproject.org/files/ENCFF700HST/@@download/ENCFF700HST.bam released s3://encode-public/2017/10/20/e74f17a4-9164-4279-a572-719cf5f83d45/ENCFF700HST.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF897EVQ bam bam unfiltered alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF660TEM/, /files/ENCFF110MCL/ 676049559 ENCODE Processing Pipeline 20a5f54ece62d26ad42917675bd0ca4b https://www.encodeproject.org/files/ENCFF897EVQ/@@download/ENCFF897EVQ.bam released s3://encode-public/2020/11/13/26f08b6d-c5b5-4bdf-8a9e-73f418bbeb5a/ENCFF897EVQ.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF320QZA bam bam alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 2 2_1 36 /files/ENCFF660TEM/, /files/ENCFF110MCL/ 382067607 ENCODE Processing Pipeline 1efb59646d40df7ff3e601e307ea0a11 https://www.encodeproject.org/files/ENCFF320QZA/@@download/ENCFF320QZA.bam released s3://encode-public/2020/11/13/5fb6de0a-fa12-4dba-be79-3d031420753b/ENCFF320QZA.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF506TLG bam bam unfiltered alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF774MDA/ 2052769976 ENCODE Processing Pipeline b4c9dda9a1e78d0c8bc16392daf0e770 https://www.encodeproject.org/files/ENCFF506TLG/@@download/ENCFF506TLG.bam released s3://encode-public/2020/11/13/2988c7be-b1da-4abc-863f-2c9c8609caae/ENCFF506TLG.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF715UTD bam bam alignments GRCh38 ENCSR103RGM Control ChIP-seq /human-donors/ENCDO840PTG/ EFO:0007076 ES-I3 cell line Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF774MDA/ 1572284643 ENCODE Processing Pipeline 454c68464e0d3c7e67e38e3a955cca35 https://www.encodeproject.org/files/ENCFF715UTD/@@download/ENCFF715UTD.bam released s3://encode-public/2020/11/13/9256e229-2712-4236-bbb0-00c900d4f420/ENCFF715UTD.bam ENCODE4 v1.6.1 GRCh38 released mild to moderate bottlenecking, low read length, mixed read lengths insufficient read depth ENCFF949MBP fastq fastq reads ENCSR257RVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1600'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7633/'], '@type': ['Target', 'Item'], 'name': 'ZNF79-human', 'label': 'ZNF79', '@id': '/targets/ZNF79-human/', 'title': 'ZNF79 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '560647c1-4a1d-4273-8183-1c5505ebc938', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF436OFO/ 1834951685 Michael Snyder, Stanford b3660facdc03f85cd35a6b10be8d4a96 SRA:SRR14103679 https://www.encodeproject.org/files/ENCFF949MBP/@@download/ENCFF949MBP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/f70635d4-432b-4034-9e3f-d2698d9cc064/ENCFF949MBP.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF436OFO fastq fastq reads ENCSR257RVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1600'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7633/'], '@type': ['Target', 'Item'], 'name': 'ZNF79-human', 'label': 'ZNF79', '@id': '/targets/ZNF79-human/', 'title': 'ZNF79 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '560647c1-4a1d-4273-8183-1c5505ebc938', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF949MBP/ 2184805717 Michael Snyder, Stanford d5b1e784909b84413ae29dcfe7f8b161 SRA:SRR14103679 https://www.encodeproject.org/files/ENCFF436OFO/@@download/ENCFF436OFO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/e49b25b8-dd92-4a61-82af-ed01982dca32/ENCFF436OFO.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF697AWO bam bam unfiltered alignments GRCh38 ENCSR257RVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1600'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7633/'], '@type': ['Target', 'Item'], 'name': 'ZNF79-human', 'label': 'ZNF79', '@id': '/targets/ZNF79-human/', 'title': 'ZNF79 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '560647c1-4a1d-4273-8183-1c5505ebc938', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF949MBP/, /files/ENCFF436OFO/ 3692810947 ENCODE Processing Pipeline affc0516d5bdf756d9d20806b8e4e983 https://www.encodeproject.org/files/ENCFF697AWO/@@download/ENCFF697AWO.bam released s3://encode-public/2020/04/21/5735c76b-61a6-44a2-9582-289b068f7efc/ENCFF697AWO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF876JZD bam bam alignments GRCh38 ENCSR257RVS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1600'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 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Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF308KXA/ 2604007014 Michael Snyder, Stanford a5dd514afedb84c3d27cbf2eecf63b13 https://www.encodeproject.org/files/ENCFF931PCB/@@download/ENCFF931PCB.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/11/d46987ce-1b6b-493f-8240-a545b9bfffd5/ENCFF931PCB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF308KXA fastq fastq reads ENCSR331KRW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2021-11-08 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF931PCB/ 2658016466 Michael Snyder, Stanford 0a8197150bf27530af4f9981f1d26828 https://www.encodeproject.org/files/ENCFF308KXA/@@download/ENCFF308KXA.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2021/10/11/d03b75f4-1c6b-4525-9c82-54ec3722c5ea/ENCFF308KXA.fastq.gz mild to moderate bottlenecking, moderate library complexity 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/human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23462/'], '@type': ['Target', 'Item'], 'name': 'HEY1-human', 'label': 'HEY1', '@id': '/targets/HEY1-human/', 'title': 'HEY1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67d677fa-1e3d-468c-bf56-d0d3ff8ec8c2', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF865UQJ/ 2508413157 Michael Snyder, Stanford 94bdb616f5b0f1ca14facc8b8ac89b96 https://www.encodeproject.org/files/ENCFF489UJM/@@download/ENCFF489UJM.fastq.gz Illumina HiSeq 4000 released 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https://www.encodeproject.org/files/ENCFF865UQJ/@@download/ENCFF865UQJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/19/6ffd9ec3-b3a0-4eed-912c-34aeb8118495/ENCFF865UQJ.fastq.gz mild to moderate bottlenecking ENCFF787JOX bam bam unfiltered alignments GRCh38 ENCSR765BVG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23462/'], '@type': ['Target', 'Item'], 'name': 'HEY1-human', 'label': 'HEY1', '@id': '/targets/HEY1-human/', 'title': 'HEY1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67d677fa-1e3d-468c-bf56-d0d3ff8ec8c2', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 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'@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF095LEA/, /files/ENCFF827SOF/ 5434421130 ENCODE Processing Pipeline 7ccef6f86491bb0a99ed103758cf04ad https://www.encodeproject.org/files/ENCFF016GKE/@@download/ENCFF016GKE.bam released s3://encode-public/2020/04/21/fda8255c-a969-4798-ae62-e81a070dbdeb/ENCFF016GKE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF079VEC bam bam alignments GRCh38 ENCSR596VPT Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/286075/'], '@type': ['Target', 'Item'], 'name': 'ZNF707-human', 'label': 'ZNF707', '@id': '/targets/ZNF707-human/', 'title': 'ZNF707 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '2e43cd69-6de5-4c23-9de9-1c9a99f54d6f', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF095LEA/, /files/ENCFF827SOF/ 4024958206 ENCODE Processing Pipeline dd891f37de201f0d77aebd7c030e00d6 https://www.encodeproject.org/files/ENCFF079VEC/@@download/ENCFF079VEC.bam released s3://encode-public/2020/04/21/7c01a220-16c1-46a2-b9d1-182d37af4c17/ENCFF079VEC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF830YEN fastq fastq reads ENCSR385JMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GMEB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10691/'], '@type': ['Target', 'Item'], 'label': 'GMEB1', 'title': 'GMEB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c3760eb9-bab7-4cb1-b92a-582fba448734', 'schema_version': '14', 'name': 'GMEB1-human', '@id': '/targets/GMEB1-human/', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF400RBN/ 2784101239 Michael Snyder, Stanford c991bf76d83c50af003fa620357f209f https://www.encodeproject.org/files/ENCFF830YEN/@@download/ENCFF830YEN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/8532bc11-7440-4be9-9b20-bfcd1e575629/ENCFF830YEN.fastq.gz mild to moderate bottlenecking ENCFF400RBN fastq fastq reads ENCSR385JMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GMEB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10691/'], '@type': ['Target', 'Item'], 'label': 'GMEB1', 'title': 'GMEB1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c3760eb9-bab7-4cb1-b92a-582fba448734', 'schema_version': '14', 'name': 'GMEB1-human', '@id': '/targets/GMEB1-human/', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF830YEN/ 2577695701 Michael Snyder, Stanford 5ff322bb5e257f1a644c2987098be8b5 https://www.encodeproject.org/files/ENCFF400RBN/@@download/ENCFF400RBN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/e5391f8f-6794-4005-b87f-b7ea4ce6bc18/ENCFF400RBN.fastq.gz mild to moderate bottlenecking ENCFF807WAU bam bam unfiltered alignments GRCh38 ENCSR385JMD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:GMEB1'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10691/'], '@type': ['Target', 'Item'], 'label': 'GMEB1', 'title': 'GMEB1 (Homo sapiens)', 'investigated_as': 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['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF968WIS/ 3046790811 Michael Snyder, Stanford efcd9a60ab4175c00002897beab28ca1 https://www.encodeproject.org/files/ENCFF857KIG/@@download/ENCFF857KIG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/f488da77-8e74-42a0-8289-ec18f68a0896/ENCFF857KIG.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF968WIS fastq fastq reads ENCSR583RUC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF857KIG/ 3337740448 Michael Snyder, Stanford 9fad3d74ac82166f46042d30b973523e https://www.encodeproject.org/files/ENCFF968WIS/@@download/ENCFF968WIS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/a18b8b1b-3298-41f0-ab5e-7ad7e67bc7ab/ENCFF968WIS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF565EKA bam bam unfiltered alignments GRCh38 ENCSR583RUC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF857KIG/, /files/ENCFF968WIS/ 5894326687 ENCODE Processing Pipeline ac6c10beebad25d5ec884ab878de11e8 https://www.encodeproject.org/files/ENCFF565EKA/@@download/ENCFF565EKA.bam released s3://encode-public/2020/04/21/ab9aaf2b-ebef-49fb-80be-85777ea23270/ENCFF565EKA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF914SQQ bam bam alignments GRCh38 ENCSR583RUC Control ChIP-seq /human-donors/ENCDO000AAK/ EFO:0002784 GM12878 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 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https://www.encodeproject.org/files/ENCFF821GVB/@@download/ENCFF821GVB.tagAlign.gz archived s3://encode-public/2016/05/02/4776058d-7401-4e0d-8fc9-8418e4d90da3/ENCFF821GVB.tagAlign.gz Lab custom hg19 archived low read length ENCFF394YVI fastq fastq reads ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 406162599 Zhiping Weng, UMass c4206f112ec1929ac0d5285519d95b0f SRA:SRR1067135 https://www.encodeproject.org/files/ENCFF394YVI/@@download/ENCFF394YVI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/e88cfacd-998f-4aa6-a216-f576b9908dd8/ENCFF394YVI.fastq.gz low read length ENCFF861CTR fastq fastq reads ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 405939390 Zhiping Weng, UMass fe68b1f2af76064065024773520556d0 SRA:SRR1067193 https://www.encodeproject.org/files/ENCFF861CTR/@@download/ENCFF861CTR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/20/39185b73-634a-4b79-ba74-5df6f16315b8/ENCFF861CTR.fastq.gz low read length ENCFF958RRI fastq fastq reads ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 404210608 Zhiping Weng, UMass d552633a40c488f0dea0eb14f0a7cb34 SRA:SRR1067304 https://www.encodeproject.org/files/ENCFF958RRI/@@download/ENCFF958RRI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/7343ef8b-7511-4898-82cc-224bb157b167/ENCFF958RRI.fastq.gz low read length ENCFF018EDQ fastq fastq reads ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 single-ended 401382158 Zhiping Weng, UMass 1be2c5a9f99efb1a53e33fc380816f9f SRA:SRR1067112 https://www.encodeproject.org/files/ENCFF018EDQ/@@download/ENCFF018EDQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/21/ea248c19-7aa8-4bfa-9222-531f569ed8f5/ENCFF018EDQ.fastq.gz low read length ENCFF961NJY bam bam alignments GRCh38 ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF018EDQ/, /files/ENCFF110MCL/, /files/ENCFF958RRI/, /files/ENCFF394YVI/, /files/ENCFF861CTR/ 1405194990 ENCODE Processing Pipeline 18f25c778001c5c75a58143cfad56b96 https://www.encodeproject.org/files/ENCFF961NJY/@@download/ENCFF961NJY.bam released s3://encode-public/2020/10/08/faea2d82-136d-417f-b057-6a890e8c1fab/ENCFF961NJY.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF967RNA bam bam unfiltered alignments GRCh38 ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 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alignments hg19 ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF807MUK/, /files/ENCFF861CTR/, /files/ENCFF958RRI/, /files/ENCFF394YVI/, /files/ENCFF018EDQ/ 1304248544 ENCODE Processing Pipeline 084d6914e64e921b00f325eced09b392 https://www.encodeproject.org/files/ENCFF948ARH/@@download/ENCFF948ARH.bam released s3://encode-public/2016/12/19/92a834e5-b136-44f9-a4e2-9a662e13cbe2/ENCFF948ARH.bam ENCODE3 hg19 archived low read length ENCFF851TTA bam bam alignments GRCh38 ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF643CGH/, /files/ENCFF861CTR/, /files/ENCFF958RRI/, /files/ENCFF394YVI/, /files/ENCFF018EDQ/ 1303974401 ENCODE Processing Pipeline acaa1edc29b8c3478907aee98acb1adb https://www.encodeproject.org/files/ENCFF851TTA/@@download/ENCFF851TTA.bam released s3://encode-public/2016/12/19/77169fca-d398-4687-84fb-fcbbad1c9373/ENCFF851TTA.bam ENCODE3 GRCh38 archived low read length ENCFF420DQI bam bam unfiltered alignments GRCh38 ENCSR650EVQ Control ChIP-seq /human-donors/ENCDO424FTP/ CL:0000223 endodermal cell in vitro differentiated cells Homo sapiens DNA 2013-07-31 Roadmap 1 1_4 36 /files/ENCFF018EDQ/, /files/ENCFF110MCL/, /files/ENCFF958RRI/, /files/ENCFF394YVI/, /files/ENCFF861CTR/ 1820335041 ENCODE Processing Pipeline d90f1bb37f64c41b70464479459f702e https://www.encodeproject.org/files/ENCFF420DQI/@@download/ENCFF420DQI.bam released s3://encode-public/2020/10/08/dbdf452e-4eb3-47cb-9693-6571f0ffbc48/ENCFF420DQI.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF079PFO fastq fastq reads ENCSR178RBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-602'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 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bottlenecking, moderate library complexity ENCFF528TVK bam bam unfiltered alignments GRCh38 ENCSR178RBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-602'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/353274/'], '@type': ['Target', 'Item'], 'name': 'ZNF445-human', 'label': 'ZNF445', '@id': '/targets/ZNF445-human/', 'title': 'ZNF445 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f4b10ff0-a421-4803-91db-adddecb2b681', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF079PFO/, /files/ENCFF565GNU/ 4621099133 ENCODE Processing Pipeline 8c581ab0d515131dd46852818488ef42 https://www.encodeproject.org/files/ENCFF528TVK/@@download/ENCFF528TVK.bam released s3://encode-public/2020/05/15/a0d0072c-f29f-453f-a5fb-407c2e230c98/ENCFF528TVK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF150RZC bam bam alignments GRCh38 ENCSR178RBD Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-602'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/353274/'], '@type': ['Target', 'Item'], 'name': 'ZNF445-human', 'label': 'ZNF445', '@id': '/targets/ZNF445-human/', 'title': 'ZNF445 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f4b10ff0-a421-4803-91db-adddecb2b681', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF079PFO/, /files/ENCFF565GNU/ 2786688548 ENCODE Processing Pipeline 9424afc1f37e05df184b864fd8c16bb3 https://www.encodeproject.org/files/ENCFF150RZC/@@download/ENCFF150RZC.bam released s3://encode-public/2020/05/15/75bdbb6a-9a74-4c23-a746-2ec4f83e4d08/ENCFF150RZC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF344SME tagAlign tagAlign alignments hg19 ENCSR155GOF Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/SRR2172654/ 246050165 Anshul Kundaje, Stanford 4fdab37e9eff0415dfddf2709627fa1c https://www.encodeproject.org/files/ENCFF344SME/@@download/ENCFF344SME.tagAlign.gz archived s3://encode-public/2016/03/30/5679ba6c-05f1-407f-8322-dca1697277f5/ENCFF344SME.tagAlign.gz Lab custom hg19 archived low read depth ENCFF442KBK tagAlign tagAlign alignments hg19 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ENCSR155GOF Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF643CGH/, /files/ENCFF840BHG/, /files/ENCFF462XLX/ 511297306 ENCODE Processing Pipeline 37a920f3a1f1733d170e86a832975c20 https://www.encodeproject.org/files/ENCFF772IWY/@@download/ENCFF772IWY.bam released s3://encode-public/2017/11/28/b326f5fe-134c-45a6-b193-32715773f366/ENCFF772IWY.bam ENCODE3 GRCh38 archived low read depth ENCFF090RUS bam bam redacted unfiltered alignments hg19 ENCSR155GOF Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF840BHG/, /files/ENCFF462XLX/ 865210346 ENCODE Processing Pipeline 92b6287cb8203d04094da49d48d82813 https://www.encodeproject.org/files/ENCFF090RUS/@@download/ENCFF090RUS.bam released s3://encode-public/2018/01/20/cbd3c941-c857-4c0e-8322-c659fbe23b5e/ENCFF090RUS.bam ENCODE3 hg19 archived low read depth ENCFF124HPX bam bam redacted alignments hg19 ENCSR155GOF Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF807MUK/, /files/ENCFF840BHG/, /files/ENCFF462XLX/ 510830612 ENCODE Processing Pipeline 42086f8ed101a3720a947ddd896f8fb2 https://www.encodeproject.org/files/ENCFF124HPX/@@download/ENCFF124HPX.bam released s3://encode-public/2018/01/20/d2667df7-6ab1-434c-a7ce-15ae41741b82/ENCFF124HPX.bam ENCODE3 hg19 archived low read depth ENCFF471NRI bam bam redacted alignments GRCh38 ENCSR155GOF Control ChIP-seq /human-donors/ENCDO666YUN/ CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 76 /files/ENCFF343EYM/, /files/ENCFF110MCL/, /files/ENCFF933UIQ/ 2867812866 ENCODE Processing Pipeline 61ee1def841b8029ffa9bf9348f6603b https://www.encodeproject.org/files/ENCFF471NRI/@@download/ENCFF471NRI.bam released s3://encode-public/2021/01/28/472e35af-3934-413d-bee3-cfbaa409ef17/ENCFF471NRI.bam ENCODE4 v1.7.0 GRCh38 released low read depth ENCFF693CJE fastq fastq reads ENCSR186SKI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/146540/'], '@type': ['Target', 'Item'], 'name': 'ZNF785-human', 'label': 'ZNF785', '@id': '/targets/ZNF785-human/', 'title': 'ZNF785 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c03b7401-cc3c-431f-a33a-cc10f979e3f5', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF391DHG/ 2838845346 Michael Snyder, Stanford d4d8a86a191bcb24f8ced2ffa29db9a2 https://www.encodeproject.org/files/ENCFF693CJE/@@download/ENCFF693CJE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/cb4fa190-799a-4675-8583-24633e0b380e/ENCFF693CJE.fastq.gz ENCFF391DHG fastq fastq reads ENCSR186SKI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/146540/'], '@type': ['Target', 'Item'], 'name': 'ZNF785-human', 'label': 'ZNF785', '@id': '/targets/ZNF785-human/', 'title': 'ZNF785 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c03b7401-cc3c-431f-a33a-cc10f979e3f5', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF693CJE/ 3099165088 Michael Snyder, Stanford 87752ae4d776b5f42fc113366d814ac8 https://www.encodeproject.org/files/ENCFF391DHG/@@download/ENCFF391DHG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/c9f08050-bb09-4b20-aae5-bd996ba93159/ENCFF391DHG.fastq.gz ENCFF980KJL bam bam unfiltered alignments GRCh38 ENCSR186SKI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/146540/'], '@type': ['Target', 'Item'], 'name': 'ZNF785-human', 'label': 'ZNF785', '@id': '/targets/ZNF785-human/', 'title': 'ZNF785 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c03b7401-cc3c-431f-a33a-cc10f979e3f5', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF693CJE/, /files/ENCFF391DHG/ 5720941365 ENCODE Processing Pipeline fddac8c3e30c5054d40ccb438289d247 https://www.encodeproject.org/files/ENCFF980KJL/@@download/ENCFF980KJL.bam released s3://encode-public/2020/04/21/bffb178e-21f6-4999-adbd-fe70b94a2867/ENCFF980KJL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF852ACB bam bam alignments GRCh38 ENCSR186SKI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/146540/'], '@type': ['Target', 'Item'], 'name': 'ZNF785-human', 'label': 'ZNF785', '@id': 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'status': 'released'}, 'genes': ['/genes/79943/'], '@type': ['Target', 'Item'], 'name': 'ZNF696-human', 'label': 'ZNF696', '@id': '/targets/ZNF696-human/', 'title': 'ZNF696 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9b03aae0-cc27-4977-916f-456d2bb90d6a', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF989JAE/ 1881166777 Michael Snyder, Stanford fc2301aba5873d35fb6a93da3ddec8ee https://www.encodeproject.org/files/ENCFF692CXZ/@@download/ENCFF692CXZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/9bb74e0f-c45b-4f2a-9e37-abedf6f1da56/ENCFF692CXZ.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF989JAE fastq fastq reads ENCSR479AEG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1042'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79943/'], '@type': ['Target', 'Item'], 'name': 'ZNF696-human', 'label': 'ZNF696', '@id': '/targets/ZNF696-human/', 'title': 'ZNF696 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9b03aae0-cc27-4977-916f-456d2bb90d6a', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF692CXZ/ 2179499825 Michael Snyder, Stanford f6f8efb6c51539d5a23bcaf989148e87 https://www.encodeproject.org/files/ENCFF989JAE/@@download/ENCFF989JAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/4bcc9b7a-8fde-47a9-9a2c-1e3ef23b6ea2/ENCFF989JAE.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF338ZUP bam bam unfiltered alignments GRCh38 ENCSR479AEG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1042'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79943/'], '@type': ['Target', 'Item'], 'name': 'ZNF696-human', 'label': 'ZNF696', '@id': '/targets/ZNF696-human/', 'title': 'ZNF696 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9b03aae0-cc27-4977-916f-456d2bb90d6a', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF692CXZ/, /files/ENCFF989JAE/ 3669082809 ENCODE Processing Pipeline f098cff9eb0da6b1b842e820c4ad78fe https://www.encodeproject.org/files/ENCFF338ZUP/@@download/ENCFF338ZUP.bam released s3://encode-public/2020/04/21/34493d47-5860-4a86-897c-ec41a9408feb/ENCFF338ZUP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF678AJP bam bam alignments GRCh38 ENCSR479AEG Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1042'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/79943/'], '@type': ['Target', 'Item'], 'name': 'ZNF696-human', 'label': 'ZNF696', '@id': '/targets/ZNF696-human/', 'title': 'ZNF696 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '9b03aae0-cc27-4977-916f-456d2bb90d6a', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF692CXZ/, /files/ENCFF989JAE/ 2531276233 ENCODE Processing Pipeline 6f5751d4dc5062cf64af707c4970234c https://www.encodeproject.org/files/ENCFF678AJP/@@download/ENCFF678AJP.bam released s3://encode-public/2020/04/21/680b8014-6dc5-46b5-bd29-8e119f179caf/ENCFF678AJP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF295WRR fastq fastq reads ENCSR775DEO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:DEAF1'], 'aliases': ['michael-snyder:TS-345'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10522/'], '@type': ['Target', 'Item'], 'label': 'DEAF1', 'title': 'DEAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f2a06456-ab40-4f8d-ad93-b15335515cac', 'schema_version': '14', 'name': 'DEAF1-human', '@id': '/targets/DEAF1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF871JGG/ 2357844654 Michael Snyder, Stanford 5165cbb8e56b404c7be53606768b3abd https://www.encodeproject.org/files/ENCFF295WRR/@@download/ENCFF295WRR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/bc808153-cdab-46c8-860e-226ff4e320ed/ENCFF295WRR.fastq.gz mild to moderate bottlenecking ENCFF871JGG fastq fastq reads ENCSR775DEO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:DEAF1'], 'aliases': ['michael-snyder:TS-345'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10522/'], '@type': ['Target', 'Item'], 'label': 'DEAF1', 'title': 'DEAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f2a06456-ab40-4f8d-ad93-b15335515cac', 'schema_version': '14', 'name': 'DEAF1-human', '@id': '/targets/DEAF1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF295WRR/ 2917064184 Michael Snyder, Stanford f411cb20d6ec016b8ffc74537f089130 https://www.encodeproject.org/files/ENCFF871JGG/@@download/ENCFF871JGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/8379fbc1-8484-46a9-95da-7e9ff50f29fe/ENCFF871JGG.fastq.gz mild to moderate bottlenecking ENCFF939OJI bam bam alignments GRCh38 ENCSR775DEO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:DEAF1'], 'aliases': ['michael-snyder:TS-345'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10522/'], '@type': ['Target', 'Item'], 'label': 'DEAF1', 'title': 'DEAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f2a06456-ab40-4f8d-ad93-b15335515cac', 'schema_version': '14', 'name': 'DEAF1-human', '@id': '/targets/DEAF1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF295WRR/, /files/ENCFF871JGG/ 3866805107 ENCODE Processing Pipeline d8b1a9f6eca7f2b89100f64c5be1b823 https://www.encodeproject.org/files/ENCFF939OJI/@@download/ENCFF939OJI.bam released s3://encode-public/2020/04/21/c29f1a3f-2fa9-4bdd-81d6-b3bd1a601542/ENCFF939OJI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF770LBZ bam bam unfiltered alignments GRCh38 ENCSR775DEO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:DEAF1'], 'aliases': ['michael-snyder:TS-345'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10522/'], '@type': ['Target', 'Item'], 'label': 'DEAF1', 'title': 'DEAF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'f2a06456-ab40-4f8d-ad93-b15335515cac', 'schema_version': '14', 'name': 'DEAF1-human', '@id': '/targets/DEAF1-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF295WRR/, /files/ENCFF871JGG/ 5153105626 ENCODE Processing Pipeline beb68f685e511b21793e3e9f63f953e6 https://www.encodeproject.org/files/ENCFF770LBZ/@@download/ENCFF770LBZ.bam released s3://encode-public/2020/04/21/d0231539-ee38-4682-8b73-7129e7a094a2/ENCFF770LBZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF591ZJG tagAlign tagAlign alignments hg19 ENCSR835ARG Control ChIP-seq /human-donors/ENCDO357DNR/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF925ZUF/ 224215426 Anshul Kundaje, Stanford 5eb9f9028643052cab55c0d40304553a https://www.encodeproject.org/files/ENCFF591ZJG/@@download/ENCFF591ZJG.tagAlign.gz archived s3://encode-public/2016/03/30/c4d91808-a137-4dc9-a9f6-71d726f9d04c/ENCFF591ZJG.tagAlign.gz Lab custom hg19 archived low read length ENCFF593JBR tagAlign tagAlign alignments hg19 ENCSR835ARG Control ChIP-seq /human-donors/ENCDO357DNR/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF925ZUF/ 204521203 Anshul Kundaje, Stanford f6af6663fc6fc7d5363a7590fd68a90e https://www.encodeproject.org/files/ENCFF593JBR/@@download/ENCFF593JBR.tagAlign.gz archived s3://encode-public/2016/02/11/36967cd9-f7c9-4bfb-8fdc-d2b46e7ff61b/ENCFF593JBR.tagAlign.gz Lab custom hg19 archived low read length ENCFF582XVX bam bam redacted unfiltered alignments GRCh38 ENCSR835ARG Control ChIP-seq /human-donors/ENCDO357DNR/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF925ZUF/ 642018440 ENCODE Processing Pipeline b1c1e8de47166cc516e1bca82e5e3dc8 https://www.encodeproject.org/files/ENCFF582XVX/@@download/ENCFF582XVX.bam released s3://encode-public/2018/01/18/b961ab6c-8452-43ae-971a-982b9e268428/ENCFF582XVX.bam ENCODE3 GRCh38 archived low read length ENCFF088QDD bam bam redacted alignments GRCh38 ENCSR835ARG Control ChIP-seq /human-donors/ENCDO357DNR/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF925ZUF/ 440748348 ENCODE Processing Pipeline c7bdb9617c0b07ef165bfd098841a08d https://www.encodeproject.org/files/ENCFF088QDD/@@download/ENCFF088QDD.bam released s3://encode-public/2018/01/18/b6671bf0-f094-40e5-83c9-75b19f67d0b9/ENCFF088QDD.bam ENCODE3 GRCh38 archived low read length ENCFF589SKG bam bam redacted unfiltered alignments hg19 ENCSR835ARG Control ChIP-seq /human-donors/ENCDO357DNR/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF925ZUF/ 635707380 ENCODE Processing Pipeline 7bc4f11a0e49911d9645cf702d2ff096 https://www.encodeproject.org/files/ENCFF589SKG/@@download/ENCFF589SKG.bam released s3://encode-public/2018/01/19/48cc080f-6c70-43a6-8734-d5aaf3219b03/ENCFF589SKG.bam ENCODE3 hg19 archived low read length ENCFF820LAK bam bam redacted alignments hg19 ENCSR835ARG Control ChIP-seq /human-donors/ENCDO357DNR/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF925ZUF/ 440803880 ENCODE Processing Pipeline 3fec72fcb0c790da83090a70b2e7dcb3 https://www.encodeproject.org/files/ENCFF820LAK/@@download/ENCFF820LAK.bam released s3://encode-public/2018/01/19/13b88220-2aa0-4416-8c4b-62fcf385e97f/ENCFF820LAK.bam ENCODE3 hg19 archived low read length ENCFF514TWP bam bam redacted alignments GRCh38 ENCSR835ARG Control ChIP-seq /human-donors/ENCDO357DNR/ UBERON:0001134 skeletal muscle tissue tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF925ZUF/, /files/ENCFF110MCL/ 1450854252 ENCODE Processing Pipeline 0aca193113c7122c8a2992d920b0ba76 https://www.encodeproject.org/files/ENCFF514TWP/@@download/ENCFF514TWP.bam released s3://encode-public/2021/01/27/e5f7ea38-f5e0-49ce-a177-d33029e3cd50/ENCFF514TWP.bam ENCODE4 v1.7.0 GRCh38 released low read length ENCFF159CIY bam bam unfiltered alignments hg19 ENCSR404JRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF991AEE/, /files/ENCFF807MUK/ 1563489248 ENCODE Processing Pipeline 4f6be922b2cd6291697a6b34e745c5ce https://www.encodeproject.org/files/ENCFF159CIY/@@download/ENCFF159CIY.bam released s3://encode-public/2018/02/20/3f303f28-49ae-4681-a545-0e327efb6ddf/ENCFF159CIY.bam ENCODE3 hg19 archived ENCFF991AEE fastq fastq reads ENCSR404JRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 single-ended 1461462124 Richard Myers, HAIB a51dfbd4d3ffe46e83004086f5b1889b SRA:SRR8660350 https://www.encodeproject.org/files/ENCFF991AEE/@@download/ENCFF991AEE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/03/31/905db001-5fc0-4cb2-89a1-2723f17491ea/ENCFF991AEE.fastq.gz ENCFF989NDZ bam bam alignments hg19 ENCSR404JRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF991AEE/, /files/ENCFF807MUK/ 1164272903 ENCODE Processing Pipeline ca6a6407b7c3ba24e37201b66e053c07 https://www.encodeproject.org/files/ENCFF989NDZ/@@download/ENCFF989NDZ.bam released s3://encode-public/2015/11/17/f36ec5be-0aa7-4874-996a-00f7c5f4ead7/ENCFF989NDZ.bam ENCODE3 hg19 archived ENCFF818DQY bam bam unfiltered alignments GRCh38 ENCSR404JRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF991AEE/, /files/ENCFF643CGH/ 1566985818 ENCODE Processing Pipeline 95042afa94ea41453af0c76be48b651e https://www.encodeproject.org/files/ENCFF818DQY/@@download/ENCFF818DQY.bam released s3://encode-public/2016/05/06/3071617d-4a6d-4302-9389-6486f8c1ad33/ENCFF818DQY.bam ENCODE3 GRCh38 archived ENCFF507LMT bam bam alignments GRCh38 ENCSR404JRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF991AEE/, /files/ENCFF643CGH/ 1164330025 ENCODE Processing Pipeline e76ddc88302ac506ca14fc3ca2ea6b05 https://www.encodeproject.org/files/ENCFF507LMT/@@download/ENCFF507LMT.bam released s3://encode-public/2016/05/06/6db3446a-e93f-4881-84b3-613169f1c94e/ENCFF507LMT.bam ENCODE3 GRCh38 archived ENCFF763OMR bam bam unfiltered alignments GRCh38 ENCSR404JRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF991AEE/ 1558872857 ENCODE Processing Pipeline fc199cd4017271234424f45aa9b39b00 https://www.encodeproject.org/files/ENCFF763OMR/@@download/ENCFF763OMR.bam released s3://encode-public/2020/10/27/d66580d4-1b95-42a7-af59-37f1a7674933/ENCFF763OMR.bam ENCODE4 v1.5.1 GRCh38 released ENCFF067KNA bam bam alignments GRCh38 ENCSR404JRP Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2016-01-08 ENCODE sonication (generic) 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF991AEE/ 1220629862 ENCODE Processing Pipeline ef8d934d74af716e5786a7409687f2a2 https://www.encodeproject.org/files/ENCFF067KNA/@@download/ENCFF067KNA.bam released s3://encode-public/2020/10/27/fe41ad17-e54b-467f-aafc-0f71ae34cbf0/ENCFF067KNA.bam ENCODE4 v1.5.1 GRCh38 released ENCFF838TLX bam bam alignments ce10 ENCSR007JPR Control ChIP-seq /worm-donors/ENCDO709TGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF609GWY/ 821540332 Kevin White, UChicago fec97864ea10ba17945d704887f7f7e5 https://www.encodeproject.org/files/ENCFF838TLX/@@download/ENCFF838TLX.bam released s3://encode-public/2015/08/19/acc4ac46-6ba0-4bb4-a5c9-c90226fc4554/ENCFF838TLX.bam Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF151INL bigWig bigWig read-depth normalized signal ce10 ENCSR007JPR Control ChIP-seq /worm-donors/ENCDO709TGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': 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/worm-donors/ENCDO709TGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF838TLX/ 9937149 Kevin White, UChicago bc674d745b77edf5c44148a1ed3823df https://www.encodeproject.org/files/ENCFF532EPV/@@download/ENCFF532EPV.bigWig released s3://encode-public/2015/10/02/d8423a4c-2a4f-4ca6-8505-da98caadf9e2/ENCFF532EPV.bigWig Lab custom ce10 archived missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF609GWY fastq fastq reads ENCSR007JPR Control ChIP-seq /worm-donors/ENCDO709TGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 694634755 Kevin White, UChicago ada5d904d7f9f397151a388740e7b248 https://www.encodeproject.org/files/ENCFF609GWY/@@download/ENCFF609GWY.fastq.gz Illumina HiSeq 2500 /files/ENCFF197OTU/ released s3://encode-public/2015/08/24/a5e80687-5135-437d-94e7-8936441d9e4f/ENCFF609GWY.fastq.gz missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF855DWL bigWig bigWig signal of unique reads ce11 ENCSR007JPR Control ChIP-seq /worm-donors/ENCDO709TGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF649RBF/ 9936793 Kevin White, UChicago 40298391a4bba29d74a6a067e99af0bb https://www.encodeproject.org/files/ENCFF855DWL/@@download/ENCFF855DWL.bigWig released s3://encode-public/2016/02/03/64ddc8c3-ca18-4ac5-ad1f-7dc3e734d810/ENCFF855DWL.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF560INX bigWig bigWig read-depth normalized signal ce11 ENCSR007JPR Control ChIP-seq /worm-donors/ENCDO709TGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF649RBF/ 9934398 Kevin White, UChicago 2411140017010d032c92ef874ffa026a https://www.encodeproject.org/files/ENCFF560INX/@@download/ENCFF560INX.bigWig released s3://encode-public/2016/02/03/8ba9f3f7-0307-4f42-8208-354acdb6105c/ENCFF560INX.bigWig Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF649RBF bam bam alignments ce11 ENCSR007JPR Control ChIP-seq /worm-donors/ENCDO709TGS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/178295/'], '@type': ['Target', 'Item'], 'name': 'rec-8-celegans', 'label': 'rec-8', '@id': '/targets/rec-8-celegans/', 'title': 'rec-8 (Caenorhabditis elegans)', 'investigated_as': ['DNA repair', 'cohesin'], 'uuid': 'a2f1a547-e023-4936-b581-bd34723bbe24', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF609GWY/ 822197550 Kevin White, UChicago a09a12fe13cfc4a650665a6962bb16a8 https://www.encodeproject.org/files/ENCFF649RBF/@@download/ENCFF649RBF.bam released s3://encode-public/2016/01/19/171e2ba4-3b73-407b-b305-fca0b0519412/ENCFF649RBF.bam Lab custom ce11 released missing genotype, missing external identifiers, missing genetic modification characterization, missing biosample characterization, missing genetic modification reagents ENCFF519XLK tagAlign tagAlign alignments hg19 ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 /files/ENCFF572ZIY/ 405532151 Anshul Kundaje, Stanford 16f5130a1ea82adf6a91ff9cbe59fb5e https://www.encodeproject.org/files/ENCFF519XLK/@@download/ENCFF519XLK.tagAlign.gz archived s3://encode-public/2016/03/30/f531d6c4-6a52-4f73-973b-293b6ab6a7df/ENCFF519XLK.tagAlign.gz Lab custom hg19 archived ENCFF572ZIY fastq fastq reads ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 single-ended 4002266617 Zhiping Weng, UMass c4b86e34c446e60333d8cb47461eb8ae SRA:SRR518308 https://www.encodeproject.org/files/ENCFF572ZIY/@@download/ENCFF572ZIY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/22/4566ff0d-eae1-4cbf-a1ce-a6ba7f081594/ENCFF572ZIY.fastq.gz ENCFF447SUN tagAlign tagAlign alignments hg19 ENCSR854GEV Control ChIP-seq UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 203287862 Anshul Kundaje, Stanford 4850b0768c924911aadf43b02f0357ed https://www.encodeproject.org/files/ENCFF447SUN/@@download/ENCFF447SUN.tagAlign.gz archived s3://encode-public/2016/02/11/7da18372-5e5a-4341-a8a1-f71cd15f1678/ENCFF447SUN.tagAlign.gz Lab custom hg19 archived ENCFF903IYS bam bam unfiltered alignments GRCh38 ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF572ZIY/, /files/ENCFF643CGH/ 4703376243 ENCODE Processing Pipeline 4c9419706b2bdc59e7c57c05bb683970 https://www.encodeproject.org/files/ENCFF903IYS/@@download/ENCFF903IYS.bam released s3://encode-public/2017/03/21/e32f0d42-d207-48a7-bb6f-8c264ccd2195/ENCFF903IYS.bam ENCODE3 GRCh38 archived ENCFF966QLG bam bam alignments GRCh38 ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF572ZIY/, /files/ENCFF643CGH/ 3397403931 ENCODE Processing Pipeline 4f9404239c6948bdf97d89c3f52f829c https://www.encodeproject.org/files/ENCFF966QLG/@@download/ENCFF966QLG.bam released s3://encode-public/2017/03/21/01b3d35d-1d61-44b6-802d-538c52e1083f/ENCFF966QLG.bam ENCODE3 GRCh38 archived ENCFF862VOV bam bam unfiltered alignments hg19 ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF572ZIY/, /files/ENCFF807MUK/ 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https://www.encodeproject.org/files/ENCFF513SOW/@@download/ENCFF513SOW.bam released s3://encode-public/2020/10/09/4e92a8f9-25b3-4174-bf8d-6d61a0e3ac7f/ENCFF513SOW.bam ENCODE4 v1.5.1 GRCh38 released ENCFF112NMZ bam bam unfiltered alignments GRCh38 ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 50 /files/ENCFF110MCL/, /files/ENCFF572ZIY/ 4636881392 ENCODE Processing Pipeline 1a0d085c61c13b45b5e4d92d00ab4510 https://www.encodeproject.org/files/ENCFF112NMZ/@@download/ENCFF112NMZ.bam released s3://encode-public/2020/10/09/1dd4ec44-186f-4ea8-aaa6-b26cf9f5615d/ENCFF112NMZ.bam ENCODE4 v1.5.1 GRCh38 released ENCFF940MTU bam bam unfiltered alignments GRCh38 ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF572ZIY/ 3789643444 ENCODE Processing Pipeline 6977243f064bf81f88344fdebd09e0d7 https://www.encodeproject.org/files/ENCFF940MTU/@@download/ENCFF940MTU.bam released s3://encode-public/2020/12/10/55fe3083-8314-42b0-97ce-a432dc8148cc/ENCFF940MTU.bam ENCODE4 v1.6.1 GRCh38 released ENCFF636HPA bam bam alignments GRCh38 ENCSR854GEV Control ChIP-seq /human-donors/ENCDO058AAA/ UBERON:0000945 stomach tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF572ZIY/ 2670959778 ENCODE Processing Pipeline 3017760c6fa1ebe93765053f3e50eca4 https://www.encodeproject.org/files/ENCFF636HPA/@@download/ENCFF636HPA.bam released s3://encode-public/2020/12/10/0a0c7968-7ad7-46f1-8624-db96ab56a299/ENCFF636HPA.bam ENCODE4 v1.6.1 GRCh38 released ENCFF669FRI tagAlign tagAlign alignments hg19 ENCSR020OIW Control ChIP-seq /human-donors/ENCDO266YSK/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 /files/ENCFF453TEH/, /files/ENCFF780WLX/ 177256169 Anshul Kundaje, Stanford 55467806ca29842f1d3a8e5a53de427b https://www.encodeproject.org/files/ENCFF669FRI/@@download/ENCFF669FRI.tagAlign.gz archived s3://encode-public/2016/03/30/f83a4363-c4ef-4c32-a0e8-72d1a2efc5d0/ENCFF669FRI.tagAlign.gz Lab custom hg19 archived mild to moderate bottlenecking, low read length ENCFF292LTZ bam bam redacted unfiltered alignments GRCh38 ENCSR020OIW Control ChIP-seq /human-donors/ENCDO266YSK/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF780WLX/, /files/ENCFF643CGH/, /files/ENCFF453TEH/ 596605221 ENCODE Processing Pipeline 6c7829a717da4f272de3b09bb71961ff https://www.encodeproject.org/files/ENCFF292LTZ/@@download/ENCFF292LTZ.bam released s3://encode-public/2018/01/18/4eab8335-0a56-4702-857f-fbf352229e0f/ENCFF292LTZ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF110XCL bam bam redacted alignments GRCh38 ENCSR020OIW Control ChIP-seq /human-donors/ENCDO266YSK/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF780WLX/, /files/ENCFF643CGH/, /files/ENCFF453TEH/ 370989229 ENCODE Processing Pipeline bed18dbf84aa5777c0748f1e8492a565 https://www.encodeproject.org/files/ENCFF110XCL/@@download/ENCFF110XCL.bam released s3://encode-public/2018/01/18/af757729-3cd8-4dd8-8642-1510eca4382b/ENCFF110XCL.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, low read length ENCFF993DAR bam bam redacted unfiltered alignments hg19 ENCSR020OIW Control ChIP-seq /human-donors/ENCDO266YSK/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF780WLX/, /files/ENCFF807MUK/, /files/ENCFF453TEH/ 590937983 ENCODE Processing Pipeline c07c49ff50401768c3bc49f5ffb4cfab https://www.encodeproject.org/files/ENCFF993DAR/@@download/ENCFF993DAR.bam released s3://encode-public/2018/01/19/60706744-f36c-44e1-b90e-89f4288c51d5/ENCFF993DAR.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF287HAW bam bam redacted alignments hg19 ENCSR020OIW Control ChIP-seq /human-donors/ENCDO266YSK/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF780WLX/, /files/ENCFF807MUK/, /files/ENCFF453TEH/ 371048055 ENCODE Processing Pipeline 21e0bed8349d85592af1df9b98e368c8 https://www.encodeproject.org/files/ENCFF287HAW/@@download/ENCFF287HAW.bam released s3://encode-public/2018/01/19/739ac3ab-39bb-490c-99d0-9042ca3d778e/ENCFF287HAW.bam ENCODE3 hg19 archived mild to moderate bottlenecking, low read length ENCFF635VHA bam bam redacted alignments GRCh38 ENCSR020OIW Control ChIP-seq /human-donors/ENCDO266YSK/ UBERON:0012489 muscle layer of colon tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_2 36 /files/ENCFF453TEH/, /files/ENCFF780WLX/, /files/ENCFF110MCL/ 1221204924 ENCODE Processing Pipeline 0f5b9e77cac57754fafeeccbbb2c3883 https://www.encodeproject.org/files/ENCFF635VHA/@@download/ENCFF635VHA.bam released s3://encode-public/2021/01/28/a68695d5-47c4-4ef6-8b92-8e304b1a0d13/ENCFF635VHA.bam ENCODE4 v1.7.0 GRCh38 released mild to moderate bottlenecking, low read length ENCFF391JWJ fastq fastq reads ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 146507588 Michael Snyder, Stanford 5316a42f8902dd71e40c647c3d124072 https://www.encodeproject.org/files/ENCFF391JWJ/@@download/ENCFF391JWJ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/df7a33f7-23b6-4971-81fb-9ce1b8b29f7a/ENCFF391JWJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF236HCG fastq fastq reads ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 165750056 Michael Snyder, Stanford e528c5707a5555dfe0826209dd07e967 https://www.encodeproject.org/files/ENCFF236HCG/@@download/ENCFF236HCG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/ff18b967-044b-41f0-b7dd-93e46c9f1acc/ENCFF236HCG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF844ZCE bam bam alignments ce10 ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF391JWJ/, /files/ENCFF236HCG/, /files/ENCFF987UMF/ 367883802 Kevin White, UChicago ab45d6d9a3c01bbd4f92a84f4b03a7c7 https://www.encodeproject.org/files/ENCFF844ZCE/@@download/ENCFF844ZCE.bam released s3://encode-public/2016/10/18/a9fdaeeb-b589-4f91-a229-f1acab9ac207/ENCFF844ZCE.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF125GIE bam bam alignments ce11 ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF391JWJ/, /files/ENCFF236HCG/, /files/ENCFF586MOL/ 368174880 Kevin White, UChicago 74952f72f2e1d8de34e4ecd7216d59c2 https://www.encodeproject.org/files/ENCFF125GIE/@@download/ENCFF125GIE.bam released s3://encode-public/2016/10/18/67ad80bf-624e-4747-8915-382e695af066/ENCFF125GIE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF967QOC bigWig bigWig read-depth normalized signal ce10 ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF844ZCE/ 10041927 Kevin White, UChicago 355beb28888b000c89286ea17983bf16 https://www.encodeproject.org/files/ENCFF967QOC/@@download/ENCFF967QOC.bigWig released s3://encode-public/2016/10/20/7d7b392a-a0be-4b2c-99bc-0e6d63032c9a/ENCFF967QOC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF950POP bigWig bigWig signal of unique reads ce10 ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF844ZCE/ 10012696 Kevin White, UChicago 3dd77fd9efff2f350a804c2b1630b83b https://www.encodeproject.org/files/ENCFF950POP/@@download/ENCFF950POP.bigWig released s3://encode-public/2016/10/20/c07e3f15-c2cc-45a6-b155-4c5d0266401f/ENCFF950POP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF443TOC bigWig bigWig read-depth normalized signal ce11 ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF125GIE/ 10036092 Kevin White, UChicago 4202fd541b61e7643815f9c03aa48946 https://www.encodeproject.org/files/ENCFF443TOC/@@download/ENCFF443TOC.bigWig released s3://encode-public/2016/10/20/568327b5-b883-4594-b579-8109830ca92a/ENCFF443TOC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF840KRK bigWig bigWig signal of unique reads ce11 ENCSR101SVT Control ChIP-seq /worm-donors/ENCDO694ERN/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191726/'], '@type': ['Target', 'Item'], 'name': 'nhr-77-celegans', 'label': 'nhr-77', '@id': '/targets/nhr-77-celegans/', 'title': 'nhr-77 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd8735926-1954-49e1-89e0-1846e9f15c71', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF125GIE/ 10013767 Kevin White, UChicago 1b01148db447c15f205ef2895732a6ff https://www.encodeproject.org/files/ENCFF840KRK/@@download/ENCFF840KRK.bigWig released s3://encode-public/2016/10/20/96374fa7-ccd9-4d1f-8b30-fe60d02abdd0/ENCFF840KRK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF411ZNC fastq fastq reads ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 2 2_1 32 single-ended 245946866 Michael Snyder, Stanford 209f32c2c9051b632354759b6fad2d99 https://www.encodeproject.org/files/ENCFF411ZNC/@@download/ENCFF411ZNC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/25f874b1-4077-4d1d-9814-329e55b56d55/ENCFF411ZNC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF560FXE fastq fastq reads ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1 1_1 32 single-ended 285059303 Michael Snyder, Stanford 76962715149e72b237e7122ee3245d60 https://www.encodeproject.org/files/ENCFF560FXE/@@download/ENCFF560FXE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2015/12/07/af1086fa-168e-4cc2-ad28-e555dbf23c15/ENCFF560FXE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF084PNI bam bam alignments ce10 ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF560FXE/, /files/ENCFF411ZNC/, /files/ENCFF987UMF/ 682619438 Kevin White, UChicago 8c2d1d40af8390c3d928c4b24909ff31 https://www.encodeproject.org/files/ENCFF084PNI/@@download/ENCFF084PNI.bam released s3://encode-public/2016/10/18/94de2979-1d5e-4880-ac07-ec7482210369/ENCFF084PNI.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF771XYE bam bam alignments ce11 ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 32 /files/ENCFF560FXE/, /files/ENCFF411ZNC/, /files/ENCFF586MOL/ 683298124 Kevin White, UChicago 3047c01508c41e92d04e35f62c8270b7 https://www.encodeproject.org/files/ENCFF771XYE/@@download/ENCFF771XYE.bam released s3://encode-public/2016/10/19/cc48f808-1674-428a-a4cd-0c50b9393e7a/ENCFF771XYE.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF410YQA bigWig bigWig read-depth normalized signal ce10 ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF084PNI/ 10020578 Kevin White, UChicago 7f42addb26ef7875b37b7991bf37cd8e https://www.encodeproject.org/files/ENCFF410YQA/@@download/ENCFF410YQA.bigWig released s3://encode-public/2016/10/20/d03ce3bd-bf7f-445f-88bb-1351948d4000/ENCFF410YQA.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF081QWY bigWig bigWig signal of unique reads ce10 ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF084PNI/ 10015681 Kevin White, UChicago e34568a27c4b946450491a1389cee668 https://www.encodeproject.org/files/ENCFF081QWY/@@download/ENCFF081QWY.bigWig released s3://encode-public/2016/10/20/812124db-18b1-4332-9c19-e4c9470bc4c3/ENCFF081QWY.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF211CNF bigWig bigWig signal of unique reads ce11 ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF771XYE/ 10011240 Kevin White, UChicago f80c05f73d0a1b56c4e0ce8218cbefcf https://www.encodeproject.org/files/ENCFF211CNF/@@download/ENCFF211CNF.bigWig released s3://encode-public/2016/10/21/8b02a45f-01c7-417a-9bd1-53137d199c3a/ENCFF211CNF.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF943ANW bigWig bigWig read-depth normalized signal ce11 ENCSR923VWK Control ChIP-seq /worm-donors/ENCDO418TMA/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/180522/'], '@type': ['Target', 'Item'], 'name': 'lsy-2-celegans', 'label': 'lsy-2', '@id': '/targets/lsy-2-celegans/', 'title': 'lsy-2 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '7c5cce4f-3304-4636-8361-7e969819c300', 'status': 'released'} DNA 2014-03-31 modENCODE 150-350 1, 2 1_1, 2_1 /files/ENCFF771XYE/ 10019616 Kevin White, UChicago 21873ad24d6e4a49e6ce57cfc1e7f05b https://www.encodeproject.org/files/ENCFF943ANW/@@download/ENCFF943ANW.bigWig released s3://encode-public/2016/10/21/24abe4b7-c4df-409e-97d7-cc1a8931504a/ENCFF943ANW.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF001ZUY fastq fastq reads ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 single-ended 615296449 Bing Ren, UCSD 918c40634e884cb224880a68d8b8be3f SRA:SRR3651841 https://www.encodeproject.org/files/ENCFF001ZUY/@@download/ENCFF001ZUY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/ee8c2ff8-9f33-4abd-896a-4d1d5ad6eea4/ENCFF001ZUY.fastq.gz low read depth, low read length ENCFF001ZVC fastq fastq reads ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 single-ended 870226721 Bing Ren, UCSD aa364fea6a3ac2fca50f9008a1f47133 SRA:SRR3651842 https://www.encodeproject.org/files/ENCFF001ZVC/@@download/ENCFF001ZVC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2014/02/25/3f1ecf93-4913-4e0c-8ee4-ab756432967c/ENCFF001ZVC.fastq.gz low read depth, low read length ENCFF643JSW bam bam unfiltered alignments mm10-minimal ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZVC/ 1136233214 ENCODE Processing Pipeline c1485bd54405ba9dcfb3b4cf6d49cf6e https://www.encodeproject.org/files/ENCFF643JSW/@@download/ENCFF643JSW.bam archived s3://encode-public/2015/02/09/879b31a8-c786-4a32-be66-4bcea11c7e01/ENCFF643JSW.bam low read depth, low read length ENCFF237ZQZ bam bam unfiltered alignments mm10-minimal ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUY/ 809646199 ENCODE Processing Pipeline a2484b3ce37e2b3e7f8b69606690937e https://www.encodeproject.org/files/ENCFF237ZQZ/@@download/ENCFF237ZQZ.bam archived s3://encode-public/2015/02/09/38bd6cf0-7165-4ade-ae1c-6b4fbbbd33bc/ENCFF237ZQZ.bam low read depth, low read length ENCFF224PDN bam bam alignments mm10-minimal ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZUY/ 510226967 ENCODE Processing Pipeline bfca9f9df024aa6630b200aaddfef2a2 https://www.encodeproject.org/files/ENCFF224PDN/@@download/ENCFF224PDN.bam archived s3://encode-public/2015/03/11/edad8dc5-9e16-4f38-960e-8855f81364de/ENCFF224PDN.bam low read depth, low read length ENCFF366UML bam bam alignments mm10-minimal ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF806TVZ/, /files/ENCFF001ZVC/ 712373330 ENCODE Processing Pipeline ac63a7823c11f8fd87611d4e7453b2f1 https://www.encodeproject.org/files/ENCFF366UML/@@download/ENCFF366UML.bam archived s3://encode-public/2015/03/11/5b759f10-ed47-44fd-9a96-263364ee098a/ENCFF366UML.bam low read depth, low read length ENCFF856WFI bam bam alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUY/ 510046722 ENCODE Processing Pipeline 69ffa9c4981f92deb7aedf09b260c60d https://www.encodeproject.org/files/ENCFF856WFI/@@download/ENCFF856WFI.bam released s3://encode-public/2016/05/20/a73ff1ea-d723-4857-add9-f6bd466af39c/ENCFF856WFI.bam ENCODE3 mm10 archived low read depth, low read length ENCFF647UJD bam bam unfiltered alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZVC/ 1137923162 ENCODE Processing Pipeline 107a0af262fc0ba155ec32240b06712a https://www.encodeproject.org/files/ENCFF647UJD/@@download/ENCFF647UJD.bam released s3://encode-public/2016/05/20/7bda93f9-374d-445b-89b0-12047cb16221/ENCFF647UJD.bam ENCODE3 mm10 archived low read depth, low read length ENCFF718CJE bam bam unfiltered alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZUY/ 810832408 ENCODE Processing Pipeline 669380b71419f98c99aaf8ca51835e3c https://www.encodeproject.org/files/ENCFF718CJE/@@download/ENCFF718CJE.bam released s3://encode-public/2016/05/20/7724ba93-722f-4d77-a872-f6ca2ba5b955/ENCFF718CJE.bam ENCODE3 mm10 archived low read depth, low read length ENCFF886TCK bam bam alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF001ZVC/ 712127913 ENCODE Processing Pipeline b88024361d8201d0f73d474283cc192c https://www.encodeproject.org/files/ENCFF886TCK/@@download/ENCFF886TCK.bam released s3://encode-public/2016/05/20/bbbab63f-676f-48a6-ba05-23a07e0adb1e/ENCFF886TCK.bam ENCODE3 mm10 archived low read depth, low read length ENCFF828LQV bam bam unfiltered alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUY/ 789001135 ENCODE Processing Pipeline a34f8254c16d28b7225aceed1a0d41c8 https://www.encodeproject.org/files/ENCFF828LQV/@@download/ENCFF828LQV.bam released s3://encode-public/2020/10/08/bb1b3e15-2821-4fcd-a195-fb3004c407f3/ENCFF828LQV.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF528XQI bam bam alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZUY/ 547851813 ENCODE Processing Pipeline 1fb73c3de8a655e75288fa8058fe6602 https://www.encodeproject.org/files/ENCFF528XQI/@@download/ENCFF528XQI.bam released s3://encode-public/2020/10/08/46ec7e48-9dc0-49e4-8d06-6f1ee52f33b0/ENCFF528XQI.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF083OLS bam bam unfiltered alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZVC/ 1106627139 ENCODE Processing Pipeline b2c706a3cedfb0e28bded96d82cde273 https://www.encodeproject.org/files/ENCFF083OLS/@@download/ENCFF083OLS.bam released s3://encode-public/2020/10/08/33c2fc72-c609-431d-92f6-4d268de59f93/ENCFF083OLS.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF833HIE bam bam alignments mm10 ENCSR317ENO Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0000948 heart tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF309GLL/, /files/ENCFF001ZVC/ 764545044 ENCODE Processing Pipeline 792db1351fc6a0cb5eafa535cdcc174f https://www.encodeproject.org/files/ENCFF833HIE/@@download/ENCFF833HIE.bam released s3://encode-public/2020/10/08/393380ae-473a-45e0-bf30-97eaf91e857b/ENCFF833HIE.bam ENCODE4 v1.5.1 mm10 released low read depth, low read length ENCFF640MKX fastq fastq reads ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1 36 single-ended 1376053235 Bradley Bernstein, Broad 35be4e7506fc6bb21c2ac98fc638ed85 SRA:SRR4235750 https://www.encodeproject.org/files/ENCFF640MKX/@@download/ENCFF640MKX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/10/24/ffbeb204-4d93-4383-8a4d-ccc6688a736d/ENCFF640MKX.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF433BQD bam bam alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF595BTS/, /files/ENCFF110MCL/, /files/ENCFF222VRH/ 3284353585 ENCODE Processing Pipeline 0d50cfde7818537edcf816d453d1ed0b https://www.encodeproject.org/files/ENCFF433BQD/@@download/ENCFF433BQD.bam released s3://encode-public/2020/09/16/2b7882f7-dd79-4c0a-a590-635ee731e7ae/ENCFF433BQD.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF318ZNB fastq fastq reads ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_2 36 single-ended 3129333835 Bradley Bernstein, Broad 56f46caccdf633a6ea8f5a521ba13363 SRA:SRR4235751 https://www.encodeproject.org/files/ENCFF318ZNB/@@download/ENCFF318ZNB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/03/03/7c14464f-687d-49bc-b646-f74c99dc4838/ENCFF318ZNB.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF222VRH fastq fastq reads ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 single-ended 3616544950 Bradley Bernstein, Broad 94809aaf96391954051bee3cfcc36ebd https://www.encodeproject.org/files/ENCFF222VRH/@@download/ENCFF222VRH.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/08/7a0fd3ba-55fb-4558-9dd4-45c393426ab7/ENCFF222VRH.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF595BTS fastq fastq reads ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 76 single-ended 3672505329 Bradley Bernstein, Broad f440700761badd4d78955c7eaabc0041 https://www.encodeproject.org/files/ENCFF595BTS/@@download/ENCFF595BTS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/08/d6aca564-9856-4935-91fe-45fe56aa604c/ENCFF595BTS.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF968AIF bam bam unfiltered alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF222VRH/, /files/ENCFF595BTS/ 4485030101 ENCODE Processing Pipeline c28a38023a4e50c6d83970a3b48ac39e https://www.encodeproject.org/files/ENCFF968AIF/@@download/ENCFF968AIF.bam released s3://encode-public/2016/10/25/6e426177-27ec-4497-b1d9-a84d2e8ea66b/ENCFF968AIF.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF251RVH bam bam unfiltered alignments hg19 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF222VRH/, /files/ENCFF595BTS/ 4452689777 ENCODE Processing Pipeline 2334d8ce904fe72fa0fd3f9ce4ad5951 https://www.encodeproject.org/files/ENCFF251RVH/@@download/ENCFF251RVH.bam released s3://encode-public/2016/10/25/22aa34f4-a7f8-4bc5-b474-a56541ae8e11/ENCFF251RVH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF017YII bam bam unfiltered alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF640MKX/, /files/ENCFF643CGH/, /files/ENCFF318ZNB/ 5648163627 ENCODE Processing Pipeline b5cf6fc4da562cf345cbd90b3d5fbae2 https://www.encodeproject.org/files/ENCFF017YII/@@download/ENCFF017YII.bam released s3://encode-public/2016/10/25/cfb39f60-462d-47bc-896c-92537b9d9726/ENCFF017YII.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF308WWZ bam bam unfiltered alignments hg19 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF640MKX/, /files/ENCFF807MUK/, /files/ENCFF318ZNB/ 5614527647 ENCODE Processing Pipeline ac615eaebfd98ed1a313c17c36d08ed5 https://www.encodeproject.org/files/ENCFF308WWZ/@@download/ENCFF308WWZ.bam released s3://encode-public/2016/10/25/63255b3b-23c6-4863-8d8a-3bcfbacf57bc/ENCFF308WWZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF292PQI bam bam alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF222VRH/, /files/ENCFF595BTS/ 3004190812 ENCODE Processing Pipeline fb41366784ebda89148caa5a49408b29 https://www.encodeproject.org/files/ENCFF292PQI/@@download/ENCFF292PQI.bam released s3://encode-public/2016/10/25/64879f4f-8306-4872-b069-622d06b9ccb4/ENCFF292PQI.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF174YPE bam bam alignments hg19 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF222VRH/, /files/ENCFF595BTS/ 3005415737 ENCODE Processing Pipeline 25dcea3c88610f34eb2946f02472e62d https://www.encodeproject.org/files/ENCFF174YPE/@@download/ENCFF174YPE.bam released s3://encode-public/2016/10/25/c391aefa-93d5-4ea0-97a5-c9d4a7bdd2ec/ENCFF174YPE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF107RUY bam bam alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF640MKX/, /files/ENCFF643CGH/, /files/ENCFF318ZNB/ 3207881711 ENCODE Processing Pipeline ab8330802ca241be845be9190ef23b89 https://www.encodeproject.org/files/ENCFF107RUY/@@download/ENCFF107RUY.bam released s3://encode-public/2016/10/25/7fc84873-38c5-4e91-b4e3-a059c81d132a/ENCFF107RUY.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF587UZE bam bam alignments hg19 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF640MKX/, /files/ENCFF807MUK/, /files/ENCFF318ZNB/ 3209334901 ENCODE Processing Pipeline a2ea7f63a691a0ed8d1eec53a7a73c3a https://www.encodeproject.org/files/ENCFF587UZE/@@download/ENCFF587UZE.bam released s3://encode-public/2016/10/25/b383203d-2242-4f76-bb51-2ea916895616/ENCFF587UZE.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF950FVP bam bam unfiltered alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF640MKX/, /files/ENCFF318ZNB/, /files/ENCFF110MCL/ 5507462794 ENCODE Processing Pipeline 8b83b349a1c12024d01ae246222ab614 https://www.encodeproject.org/files/ENCFF950FVP/@@download/ENCFF950FVP.bam released s3://encode-public/2020/09/16/4c3d4159-00c2-4c4e-b8bc-b67931c3c551/ENCFF950FVP.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF474LAV bam bam alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF640MKX/, /files/ENCFF318ZNB/, /files/ENCFF110MCL/ 3472599726 ENCODE Processing Pipeline 4ef5d105f3bcb74a5669435e1f02e2d7 https://www.encodeproject.org/files/ENCFF474LAV/@@download/ENCFF474LAV.bam released s3://encode-public/2020/09/16/afe4f292-4908-4291-a54c-a2f34a69d227/ENCFF474LAV.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF461SVL bam bam unfiltered alignments GRCh38 ENCSR768LHG Control ChIP-seq /human-donors/ENCDO000AAE/ EFO:0001203 MCF-7 cell line Homo sapiens DNA 2015-08-03 ENCODE see document 200-600 2 2_1 36 /files/ENCFF595BTS/, /files/ENCFF110MCL/, /files/ENCFF222VRH/ 4384083005 ENCODE Processing Pipeline a02edb9df8ef7f48c474b2415b80d3c8 https://www.encodeproject.org/files/ENCFF461SVL/@@download/ENCFF461SVL.bam released s3://encode-public/2020/09/16/bd0749f6-0241-4b80-9794-2a241b2e2d1e/ENCFF461SVL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths ENCFF849RAD fastq fastq reads ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_1 36 single-ended 737464966 Bradley Bernstein, Broad a4926d5cfbb355ceb0d551e77fa9ce6f SRA:SRR5339396 https://www.encodeproject.org/files/ENCFF849RAD/@@download/ENCFF849RAD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/05/22/cc9d0b6f-8a3f-4533-966f-f70c2e2ba0d8/ENCFF849RAD.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF380FVL bam bam unfiltered alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 36 /files/ENCFF110MCL/, /files/ENCFF956QDK/, /files/ENCFF205YRD/ 4635113919 ENCODE Processing Pipeline f4fd4c18f9c1bacaffab7bb3a6b9099a https://www.encodeproject.org/files/ENCFF380FVL/@@download/ENCFF380FVL.bam released s3://encode-public/2020/09/16/a6d1d5bb-2501-4fcb-ac74-195c71919b59/ENCFF380FVL.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF800DGE fastq fastq reads ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_2 76 single-ended 1229202827 Bradley Bernstein, Broad f4bb216a80c4e3cf6727242b237e3bb5 SRA:SRR5339397 https://www.encodeproject.org/files/ENCFF800DGE/@@download/ENCFF800DGE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/acd977c9-cbcd-4a04-a047-bfa52482cbc9/ENCFF800DGE.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF956QDK fastq fastq reads ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 76 single-ended 4333698834 Bradley Bernstein, Broad b06376edf56a5976509558465d706798 SRA:SRR5339394 https://www.encodeproject.org/files/ENCFF956QDK/@@download/ENCFF956QDK.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/d572a583-a2c8-45bf-a066-f39935c92cd6/ENCFF956QDK.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF137ZTJ fastq fastq reads ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_2 76 single-ended 1242082521 Bradley Bernstein, Broad 3ede26070e9c48b3660696fe87632e2d SRA:SRR5339398 https://www.encodeproject.org/files/ENCFF137ZTJ/@@download/ENCFF137ZTJ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/1a15803f-3aed-49ac-a850-345b3a462322/ENCFF137ZTJ.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF205YRD fastq fastq reads ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 76 single-ended 4261133148 Bradley Bernstein, Broad 587ad7f610a566896d957c2bea69f1a6 SRA:SRR5339395 https://www.encodeproject.org/files/ENCFF205YRD/@@download/ENCFF205YRD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/11/a4fb61d7-de16-4b3e-ac34-9250380d7749/ENCFF205YRD.fastq.gz mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF452HMA bam bam unfiltered alignments hg19 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF849RAD/, /files/ENCFF807MUK/, /files/ENCFF800DGE/, /files/ENCFF137ZTJ/ 2438307142 ENCODE Processing Pipeline 13ae2133e863c155f8af1ce011c0e6f5 https://www.encodeproject.org/files/ENCFF452HMA/@@download/ENCFF452HMA.bam released s3://encode-public/2016/10/26/49086f89-a302-4958-bbbb-4d91635cea8d/ENCFF452HMA.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF994UEQ bam bam alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF849RAD/, /files/ENCFF643CGH/, /files/ENCFF800DGE/, /files/ENCFF137ZTJ/ 1259080714 ENCODE Processing Pipeline b72832ee7a06670835795dfa72f08b70 https://www.encodeproject.org/files/ENCFF994UEQ/@@download/ENCFF994UEQ.bam released s3://encode-public/2016/10/26/689c7ff2-663f-448f-99be-14688877ad9c/ENCFF994UEQ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF960KMH bam bam alignments hg19 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF849RAD/, /files/ENCFF807MUK/, /files/ENCFF800DGE/, /files/ENCFF137ZTJ/ 1259568930 ENCODE Processing Pipeline 978abf1e8c11e895c9c1fff5be7d1c5b https://www.encodeproject.org/files/ENCFF960KMH/@@download/ENCFF960KMH.bam released s3://encode-public/2016/10/26/1e31086b-9072-4603-8ea2-54de45ddab07/ENCFF960KMH.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF198OXP bam bam alignments hg19 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 36 /files/ENCFF205YRD/, /files/ENCFF807MUK/, /files/ENCFF956QDK/ 1771548067 ENCODE Processing Pipeline bcec0621918682a3c049edcb3b6d75b4 https://www.encodeproject.org/files/ENCFF198OXP/@@download/ENCFF198OXP.bam released s3://encode-public/2016/10/26/c6830c26-f8ef-4a43-822f-a11fe7df3ef5/ENCFF198OXP.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF230XRK bam bam unfiltered alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF849RAD/, /files/ENCFF643CGH/, /files/ENCFF800DGE/, /files/ENCFF137ZTJ/ 2454934060 ENCODE Processing Pipeline bac4fdda035362d3f6186e8b3cdaecdc https://www.encodeproject.org/files/ENCFF230XRK/@@download/ENCFF230XRK.bam released s3://encode-public/2016/10/26/b01bd6b7-e2cc-4b52-816e-e3f33c902e9e/ENCFF230XRK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF932LMZ bam bam unfiltered alignments hg19 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 36 /files/ENCFF205YRD/, /files/ENCFF807MUK/, /files/ENCFF956QDK/ 4687291311 ENCODE Processing Pipeline 0ff1edc67ff2aa85ffda5ff186911644 https://www.encodeproject.org/files/ENCFF932LMZ/@@download/ENCFF932LMZ.bam released s3://encode-public/2016/10/26/67e76c81-ebb4-4721-8184-5ec4d697e269/ENCFF932LMZ.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF988REB bam bam unfiltered alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 36 /files/ENCFF205YRD/, /files/ENCFF643CGH/, /files/ENCFF956QDK/ 4720896544 ENCODE Processing Pipeline cf003e1317997b562d50bffb7ad6c80c https://www.encodeproject.org/files/ENCFF988REB/@@download/ENCFF988REB.bam released s3://encode-public/2016/10/26/4dfba5d5-d842-498f-a5b9-f8377e896a09/ENCFF988REB.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF906YGC bam bam alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 36 /files/ENCFF205YRD/, /files/ENCFF643CGH/, /files/ENCFF956QDK/ 1770952910 ENCODE Processing Pipeline b4d3a0ae4e6c10e033ac9beea221b691 https://www.encodeproject.org/files/ENCFF906YGC/@@download/ENCFF906YGC.bam released s3://encode-public/2016/10/26/04a89c22-0ef8-461f-a338-175c3b343486/ENCFF906YGC.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF427BYB bam bam alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF849RAD/, /files/ENCFF800DGE/, /files/ENCFF137ZTJ/ 1375632882 ENCODE Processing Pipeline 8cbe76d60a19b02f8b9b89cc0e081caf https://www.encodeproject.org/files/ENCFF427BYB/@@download/ENCFF427BYB.bam released s3://encode-public/2020/09/16/f39827fc-8e8e-4590-b2bb-4d8c8bc6cac0/ENCFF427BYB.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF803UAQ bam bam alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 2 2_2 36 /files/ENCFF110MCL/, /files/ENCFF956QDK/, /files/ENCFF205YRD/ 1938220354 ENCODE Processing Pipeline c41dec59600183d9dfae010066381cfa https://www.encodeproject.org/files/ENCFF803UAQ/@@download/ENCFF803UAQ.bam released s3://encode-public/2020/09/16/32cec556-a785-4026-a5f1-fe7826f3c35c/ENCFF803UAQ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF088QZQ bam bam unfiltered alignments GRCh38 ENCSR836XKP Control ChIP-seq /human-donors/ENCDO085ZKK/ EFO:0007070 ACC112 cell line Homo sapiens DNA 2016-10-27 ENCODE see document 200-600 1 1_1, 1_2 36 /files/ENCFF110MCL/, /files/ENCFF849RAD/, /files/ENCFF800DGE/, /files/ENCFF137ZTJ/ 2410453697 ENCODE Processing Pipeline 14f549d393c525effbf930fa26c501d6 https://www.encodeproject.org/files/ENCFF088QZQ/@@download/ENCFF088QZQ.bam released s3://encode-public/2020/09/16/a959bcdc-fceb-43a6-8c9d-effceffddb28/ENCFF088QZQ.bam ENCODE4 v1.5.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity, low read length, mixed read lengths poor library complexity, severe bottlenecking ENCFF002AQY fastq fastq reads ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 1640254632 Bing Ren, UCSD ccbfa4002dc68a121100210bcafc67f8 SRA:SRR3651532 https://www.encodeproject.org/files/ENCFF002AQY/@@download/ENCFF002AQY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/b13a5431-7b16-4047-9f0d-7e20f18d53dc/ENCFF002AQY.fastq.gz ENCFF002ARA fastq fastq reads ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2461086036 Bing Ren, UCSD d94516069e13e4723b694ed577a6e093 SRA:SRR3651533 https://www.encodeproject.org/files/ENCFF002ARA/@@download/ENCFF002ARA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2014/03/15/43baa137-4fa0-44e4-bdb6-cf6c7c4608ae/ENCFF002ARA.fastq.gz ENCFF725CKM bam bam unfiltered alignments mm10-minimal ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQY/ 1878936261 ENCODE Processing Pipeline c827a6bb6aff69c374718833e51e8256 https://www.encodeproject.org/files/ENCFF725CKM/@@download/ENCFF725CKM.bam archived s3://encode-public/2015/02/09/2a0ee235-ae83-4ba9-ac69-6fb7b5552ea2/ENCFF725CKM.bam ENCFF056YGF bam bam unfiltered alignments mm10-minimal ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002ARA/ 2788706829 ENCODE Processing Pipeline f74e19df0c0b7d95ed451897b768345e https://www.encodeproject.org/files/ENCFF056YGF/@@download/ENCFF056YGF.bam archived s3://encode-public/2015/02/09/c710109f-1875-4615-b7e7-3a4cd8e31b5e/ENCFF056YGF.bam ENCFF184XIW bam bam alignments mm10-minimal ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF002ARA/ 1936960724 ENCODE Processing Pipeline d264f0d878547a86e098dc260af45b0e https://www.encodeproject.org/files/ENCFF184XIW/@@download/ENCFF184XIW.bam archived s3://encode-public/2015/05/23/32f3c404-205b-4319-8111-d323b69c065e/ENCFF184XIW.bam ENCFF175WRM bam bam alignments mm10-minimal ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF002AQY/ 1338823510 ENCODE Processing Pipeline b6858534708120153c2df9b54834759e https://www.encodeproject.org/files/ENCFF175WRM/@@download/ENCFF175WRM.bam archived s3://encode-public/2015/05/23/3823f836-5f74-416c-b213-3a9addb5a322/ENCFF175WRM.bam ENCFF361JEX bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQY/ 1881223729 ENCODE Processing Pipeline 0dcd45fc52e5159620bf483f29b192cf https://www.encodeproject.org/files/ENCFF361JEX/@@download/ENCFF361JEX.bam released s3://encode-public/2016/05/20/df8f39a8-6851-45db-83e8-25b08f992bef/ENCFF361JEX.bam ENCODE3 mm10 archived ENCFF846PNX bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARA/ 2791606701 ENCODE Processing Pipeline 6e1b269b7a1bce23ecfe81d9a141be91 https://www.encodeproject.org/files/ENCFF846PNX/@@download/ENCFF846PNX.bam released s3://encode-public/2016/05/20/0b4ed86a-699b-4163-b78e-a8cb29ce8e0f/ENCFF846PNX.bam ENCODE3 mm10 archived ENCFF780NAD bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF002AQY/ 1338466184 ENCODE Processing Pipeline 8f4a6820d39c2aa263f253742d54d642 https://www.encodeproject.org/files/ENCFF780NAD/@@download/ENCFF780NAD.bam released s3://encode-public/2016/05/20/2ffb43ba-2d21-49a1-b5cd-c3b97483638f/ENCFF780NAD.bam ENCODE3 mm10 archived ENCFF260TOA bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF018NEO/, /files/ENCFF002ARA/ 1936436343 ENCODE Processing Pipeline 549faa595ce3d55bfcd4be742853a2e2 https://www.encodeproject.org/files/ENCFF260TOA/@@download/ENCFF260TOA.bam released s3://encode-public/2016/05/20/e6a98505-bc1e-44d7-8cc0-a6c0b36be309/ENCFF260TOA.bam ENCODE3 mm10 archived ENCFF239WXD bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARA/ 2265759926 ENCODE Processing Pipeline f3550bbf776ce19c3e7292a1ddd5d9f5 https://www.encodeproject.org/files/ENCFF239WXD/@@download/ENCFF239WXD.bam released s3://encode-public/2016/10/03/c1bd4159-eeff-409f-a974-0ff64a4a18a0/ENCFF239WXD.bam ENCODE3 mm10 archived ENCFF597OQI bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQY/ 1530460039 ENCODE Processing Pipeline 6dd8d8294df76395259a2c740342136a https://www.encodeproject.org/files/ENCFF597OQI/@@download/ENCFF597OQI.bam released s3://encode-public/2016/10/03/4f3dd8e0-370f-4429-8261-ab7f98f9792d/ENCFF597OQI.bam ENCODE3 mm10 archived ENCFF190RFD bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF018NEO/, /files/ENCFF002AQY/ 1021821580 ENCODE Processing Pipeline 9c36735d80db22dbc8cc444f0a42a9e0 https://www.encodeproject.org/files/ENCFF190RFD/@@download/ENCFF190RFD.bam released s3://encode-public/2016/10/03/a988b2ff-1107-4c01-8592-d47fb977f24f/ENCFF190RFD.bam ENCODE3 mm10 archived ENCFF523XKB bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF018NEO/, /files/ENCFF002ARA/ 1473116983 ENCODE Processing Pipeline 3739153d2d2552a3807497cdcde73453 https://www.encodeproject.org/files/ENCFF523XKB/@@download/ENCFF523XKB.bam released s3://encode-public/2016/10/03/6311cb2b-b5c1-4457-83f1-dc6d684bd975/ENCFF523XKB.bam ENCODE3 mm10 archived ENCFF071PNS bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF002ARA/ 2746831318 ENCODE Processing Pipeline 632aa4f405a3b96c2b3fd4300f76a15e https://www.encodeproject.org/files/ENCFF071PNS/@@download/ENCFF071PNS.bam released s3://encode-public/2020/10/08/6110476b-2b90-4c44-a03e-792a9025cbd2/ENCFF071PNS.bam ENCODE4 v1.5.1 mm10 released ENCFF389EZZ bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQY/, /files/ENCFF309GLL/ 1100479863 ENCODE Processing Pipeline 0ddb742b987598977ee58aefa5f01115 https://www.encodeproject.org/files/ENCFF389EZZ/@@download/ENCFF389EZZ.bam released s3://encode-public/2020/10/10/876560e4-7a98-4759-bfd1-82eaf4df4276/ENCFF389EZZ.bam ENCODE4 v1.5.1 mm10 released ENCFF016HCC bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQY/ 1849144144 ENCODE Processing Pipeline 71a869753628dc867f90181fe1f607ac https://www.encodeproject.org/files/ENCFF016HCC/@@download/ENCFF016HCC.bam released s3://encode-public/2020/10/08/a48fcc31-a4cf-4ca2-823c-aa455515b492/ENCFF016HCC.bam ENCODE4 v1.5.1 mm10 released ENCFF190CQM bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF002AQY/ 1395993499 ENCODE Processing Pipeline 98af6dee78ade14ecbcb172ac37a41ce https://www.encodeproject.org/files/ENCFF190CQM/@@download/ENCFF190CQM.bam released s3://encode-public/2020/10/08/12ac0853-b7c5-433e-9c42-dd766dd957c4/ENCFF190CQM.bam ENCODE4 v1.5.1 mm10 released ENCFF064PWN bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF309GLL/, /files/ENCFF002ARA/ 2014859563 ENCODE Processing Pipeline 5b17fe4747b446665910de4c31338b98 https://www.encodeproject.org/files/ENCFF064PWN/@@download/ENCFF064PWN.bam released s3://encode-public/2020/10/08/55bedccb-b673-4b7e-8aef-8662ed38af7c/ENCFF064PWN.bam ENCODE4 v1.5.1 mm10 released ENCFF629JUU bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 1 1_1 36 /files/ENCFF002AQY/, /files/ENCFF309GLL/ 1492381793 ENCODE Processing Pipeline 6d8c8d45b83d2e81e7c49819815eac5a https://www.encodeproject.org/files/ENCFF629JUU/@@download/ENCFF629JUU.bam released s3://encode-public/2020/10/10/1fd7ffbe-99ba-4d4c-a2a0-42c69eb0b955/ENCFF629JUU.bam ENCODE4 v1.5.1 mm10 released ENCFF064KXT bam bam unfiltered alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARA/, /files/ENCFF309GLL/ 2208862248 ENCODE Processing Pipeline 2f434c1c972b0afd6d21c719b5ef54db https://www.encodeproject.org/files/ENCFF064KXT/@@download/ENCFF064KXT.bam released s3://encode-public/2020/10/10/8db51835-baf5-4b29-aa08-65ad0f3a7a0b/ENCFF064KXT.bam ENCODE4 v1.5.1 mm10 released ENCFF250TGV bam bam alignments mm10 ENCSR178MLS Control ChIP-seq /mouse-donors/ENCDO469XMJ/ UBERON:0002113 kidney tissue Mus musculus DNA SDS 2014-06-30 ENCODE sonication (generic) 300-500 2 2_1 36 /files/ENCFF002ARA/, /files/ENCFF309GLL/ 1583952835 ENCODE Processing Pipeline 58433c17bd7ba5254925940351d98712 https://www.encodeproject.org/files/ENCFF250TGV/@@download/ENCFF250TGV.bam released s3://encode-public/2020/10/10/0927f901-3045-4a6c-94d8-fa5f0c7cb873/ENCFF250TGV.bam ENCODE4 v1.5.1 mm10 released ENCFF915IQQ bam bam unfiltered alignments hg19 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF243LBL/, /files/ENCFF807MUK/ 1420134741 ENCODE Processing Pipeline 332d9bf8e704780eb300c8b0ce57c39c https://www.encodeproject.org/files/ENCFF915IQQ/@@download/ENCFF915IQQ.bam released s3://encode-public/2018/02/22/342e7d6b-39cc-444b-aaa3-86129fa2ab07/ENCFF915IQQ.bam ENCODE3 hg19 archived missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF697MPQ bam bam unfiltered alignments hg19 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo 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/human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 single-ended 967667801 Bradley Bernstein, Broad eaf8ab2fea0e7b2a258099cea5e4f08b SRA:SRR5331568 https://www.encodeproject.org/files/ENCFF243LBL/@@download/ENCFF243LBL.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/02/20/b0d5980f-2281-4a8a-ba45-3e810bfe4c9c/ENCFF243LBL.fastq.gz missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF854BYF fastq fastq reads ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 single-ended 2315624080 Bradley Bernstein, Broad bc46eea79c71d02d95559a7da4c13c37 SRA:SRR5331567 https://www.encodeproject.org/files/ENCFF854BYF/@@download/ENCFF854BYF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/02/20/26ddde19-5672-4adf-b06c-25d22d6cda9e/ENCFF854BYF.fastq.gz missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF521WZK bam bam unfiltered alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF850PQD/, /files/ENCFF243LBL/, /files/ENCFF110MCL/, /files/ENCFF967RRE/ 2954003053 ENCODE Processing Pipeline a493a0cc215839df0f102a120be16003 https://www.encodeproject.org/files/ENCFF521WZK/@@download/ENCFF521WZK.bam released s3://encode-public/2020/09/17/d36e02c8-72b8-436f-aff0-cf2070232a7a/ENCFF521WZK.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF070SWI bam bam alignments hg19 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF854BYF/, /files/ENCFF807MUK/ 1982688874 ENCODE Processing Pipeline 2afd2e1a2bce584a7e1f7ae2ef657429 https://www.encodeproject.org/files/ENCFF070SWI/@@download/ENCFF070SWI.bam released s3://encode-public/2015/12/17/f9c9866b-b479-4a54-afd7-2e229f2900f4/ENCFF070SWI.bam ENCODE3 hg19 archived missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF164YRT bam bam alignments hg19 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF243LBL/, /files/ENCFF807MUK/ 942524831 ENCODE Processing Pipeline 37573bae9f68d07a0b5e273b92b44349 https://www.encodeproject.org/files/ENCFF164YRT/@@download/ENCFF164YRT.bam released s3://encode-public/2015/12/17/e6d4edc2-0c4c-4643-83bb-f0bfd084aa77/ENCFF164YRT.bam ENCODE3 hg19 archived missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF251JQE bam bam unfiltered alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF243LBL/, /files/ENCFF643CGH/ 1428509787 ENCODE Processing Pipeline 0d42c14a3f8497fb20c857ddb058c00f https://www.encodeproject.org/files/ENCFF251JQE/@@download/ENCFF251JQE.bam released s3://encode-public/2016/05/06/dc425beb-c33d-4b3d-9b15-52f6cb436e86/ENCFF251JQE.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF495KCW bam bam unfiltered alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF854BYF/, /files/ENCFF643CGH/ 2976961132 ENCODE Processing Pipeline b50cdc4307c3af9d662d7fe14d6848b7 https://www.encodeproject.org/files/ENCFF495KCW/@@download/ENCFF495KCW.bam released s3://encode-public/2016/05/06/554ac288-3e2a-4c80-b33b-528171cf4c7a/ENCFF495KCW.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF231TXH bam bam alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF243LBL/, /files/ENCFF643CGH/ 942217255 ENCODE Processing Pipeline 748f9ab0267e97ff7ae2b8709ed4fddc https://www.encodeproject.org/files/ENCFF231TXH/@@download/ENCFF231TXH.bam released s3://encode-public/2016/05/06/1af8ca27-ee6a-4314-926c-bac1446ec588/ENCFF231TXH.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF277VON bam bam alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF854BYF/, /files/ENCFF643CGH/ 1982725827 ENCODE Processing Pipeline 7d7bf7f21b1e99045a7df43a7dcc584e https://www.encodeproject.org/files/ENCFF277VON/@@download/ENCFF277VON.bam released s3://encode-public/2016/05/06/9570c359-96a5-49dc-9be1-0688e7118bdf/ENCFF277VON.bam ENCODE3 GRCh38 archived missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF850PQD fastq fastq reads ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 76 single-ended 1298061291 Bradley Bernstein, Broad 159ab534359e0bbbb74544b8f779e635 SRA:SRR5331569 https://www.encodeproject.org/files/ENCFF850PQD/@@download/ENCFF850PQD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/379fa337-aa8a-4ff4-aebe-7b809a25b72d/ENCFF850PQD.fastq.gz missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF967RRE fastq fastq reads ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 76 single-ended 1264706312 Bradley Bernstein, Broad 5fbb37be2a89c1a72524654246feec24 SRA:SRR5331570 https://www.encodeproject.org/files/ENCFF967RRE/@@download/ENCFF967RRE.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2016/10/12/4a251c56-f1b0-4eaa-9b7b-3ea0029a4b4c/ENCFF967RRE.fastq.gz missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF962NLA bam bam alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF854BYF/, /files/ENCFF110MCL/ 2168767929 ENCODE Processing Pipeline d99c6093c2d5fbe560939d70b1e7ddd2 https://www.encodeproject.org/files/ENCFF962NLA/@@download/ENCFF962NLA.bam released s3://encode-public/2020/09/17/c0fdb6bc-a588-4833-905e-ae0fc99ca7e9/ENCFF962NLA.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF750LWO bam bam alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 36 /files/ENCFF850PQD/, /files/ENCFF243LBL/, /files/ENCFF110MCL/, /files/ENCFF967RRE/ 1979214244 ENCODE Processing Pipeline ef265ebdd0e71e98c991d492c468124e https://www.encodeproject.org/files/ENCFF750LWO/@@download/ENCFF750LWO.bam released s3://encode-public/2020/09/17/1c0f0da9-69cf-4968-b69b-dc6ff4fa0db9/ENCFF750LWO.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF264CQC bam bam unfiltered alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 36 /files/ENCFF854BYF/, /files/ENCFF110MCL/ 2884435046 ENCODE Processing Pipeline 3f65ff50c92cc586257f3582141056f6 https://www.encodeproject.org/files/ENCFF264CQC/@@download/ENCFF264CQC.bam released s3://encode-public/2020/09/17/6c8741d3-a76f-4523-8367-f8812fa60a7e/ENCFF264CQC.bam ENCODE4 v1.5.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF166SAJ bam bam unfiltered alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 30 /files/ENCFF850PQD/, /files/ENCFF967RRE/, /files/ENCFF243LBL/, /files/ENCFF110MCL/ 2650037913 ENCODE Processing Pipeline 5489851d44f7e2af5274f84fbd99f13d https://www.encodeproject.org/files/ENCFF166SAJ/@@download/ENCFF166SAJ.bam released s3://encode-public/2021/01/07/a368e9c1-bacc-456b-bb1d-41cef3e1da08/ENCFF166SAJ.bam ENCODE4 v1.6.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF527VTU bam bam unfiltered alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 30 /files/ENCFF854BYF/, /files/ENCFF110MCL/ 2582641754 ENCODE Processing Pipeline 58979d56fba9112e5eb3c062f07069b0 https://www.encodeproject.org/files/ENCFF527VTU/@@download/ENCFF527VTU.bam released s3://encode-public/2021/01/07/0336dc54-1394-49b3-9a76-16483fd2d8bc/ENCFF527VTU.bam ENCODE4 v1.6.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF427ETT bam bam alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 1 1_1 30 /files/ENCFF850PQD/, /files/ENCFF967RRE/, /files/ENCFF243LBL/, /files/ENCFF110MCL/ 1747286667 ENCODE Processing Pipeline 51f72ab9dd4f790ae71803b5194dc75c https://www.encodeproject.org/files/ENCFF427ETT/@@download/ENCFF427ETT.bam released s3://encode-public/2021/01/07/c7833d67-468a-40d1-9600-c3624a9dc2e7/ENCFF427ETT.bam ENCODE4 v1.6.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF441BTB bam bam alignments GRCh38 ENCSR287XMW Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0003830 mid-neurogenesis radial glial cells in vitro differentiated cells Homo sapiens insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-580'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/388585/'], '@type': ['Target', 'Item'], 'name': 'HES5-human', 'label': 'HES5', '@id': '/targets/HES5-human/', 'title': 'HES5 (Homo sapiens)', 'investigated_as': ['cofactor', 'transcription factor'], 'uuid': 'c253e3b4-3f91-47cc-9165-f5ec04e37653', 'status': 'released'} DNA 2015-08-03 ENCODE 200-600, 300-1000 2 2_1 30 /files/ENCFF854BYF/, /files/ENCFF110MCL/ 1881278010 ENCODE Processing Pipeline f3e4fe3c40db3009a5dbfd2d95be1dd9 https://www.encodeproject.org/files/ENCFF441BTB/@@download/ENCFF441BTB.bam released s3://encode-public/2021/01/07/89a110c3-b295-4f7e-8e47-f2ce69db7838/ENCFF441BTB.bam ENCODE4 v1.6.1 GRCh38 released missing genetic modification characterization, missing genetic modification reagents, low read length, mixed read lengths, missing biosample characterization, mild to moderate bottlenecking ENCFF743HQG fastq fastq reads ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 single-ended 3418185501 Bing Ren, UCSD 1cec1f929fc60e0fee55d4d45b594353 SRA:SRR3652960 https://www.encodeproject.org/files/ENCFF743HQG/@@download/ENCFF743HQG.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/07/20/8d031660-2dfe-487a-813f-dbe9d9f4ee55/ENCFF743HQG.fastq.gz inconsistent platforms ENCFF507RYO fastq fastq reads ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 single-ended 2703685985 Bing Ren, UCSD bce8d9c67efeecb217450bbafc034864 SRA:SRR3652957 https://www.encodeproject.org/files/ENCFF507RYO/@@download/ENCFF507RYO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/20/d0d955b8-0b80-450e-bd3a-b15034d26096/ENCFF507RYO.fastq.gz inconsistent platforms ENCFF834ZUW bam bam alignments mm10-minimal ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF806TVZ/, /files/ENCFF743HQG/ 2625573742 ENCODE Processing Pipeline 70f9dbfdcee91ac40799b9bd7c66978e https://www.encodeproject.org/files/ENCFF834ZUW/@@download/ENCFF834ZUW.bam archived s3://encode-public/2015/10/31/da60d9c4-1a90-4c04-82c6-0986e7e00db7/ENCFF834ZUW.bam inconsistent platforms ENCFF326YEF bam bam alignments mm10-minimal ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1 50 /files/ENCFF806TVZ/, /files/ENCFF507RYO/ 2197936264 ENCODE Processing Pipeline 4855987b14db5bd46be4c61c6cfd648f https://www.encodeproject.org/files/ENCFF326YEF/@@download/ENCFF326YEF.bam archived s3://encode-public/2015/10/31/7d2c0924-b44a-45bc-a642-58e6efe07ab3/ENCFF326YEF.bam inconsistent platforms ENCFF078VAN bam bam unfiltered alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF743HQG/ 4082996093 ENCODE Processing Pipeline 5666dd7020aa9eabed2071a2dab33a27 https://www.encodeproject.org/files/ENCFF078VAN/@@download/ENCFF078VAN.bam released s3://encode-public/2016/05/20/f3e6e87c-3b20-4528-a541-90b937cdb87b/ENCFF078VAN.bam ENCODE3 mm10 archived inconsistent platforms ENCFF643WUI bam bam alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF018NEO/, /files/ENCFF743HQG/ 2624856413 ENCODE Processing Pipeline fe39eeeae7f0df89ab1812e889eb50c1 https://www.encodeproject.org/files/ENCFF643WUI/@@download/ENCFF643WUI.bam released s3://encode-public/2016/05/20/8a7d3a21-5613-4b11-ab89-8d8649606f76/ENCFF643WUI.bam ENCODE3 mm10 archived inconsistent platforms ENCFF306EGG fastq fastq reads ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_2 50 single-ended 239011474 Bing Ren, UCSD 109a5a02acfc23d882012ab0a1af72bb SRA:SRR3652958 https://www.encodeproject.org/files/ENCFF306EGG/@@download/ENCFF306EGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/c2f986df-3941-4bd0-ba14-9570ab1aed5c/ENCFF306EGG.fastq.gz inconsistent platforms ENCFF110DYF fastq fastq reads ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_3 50 single-ended 327555275 Bing Ren, UCSD 1eec2433352b92737dabeb57e8b564c5 SRA:SRR3652959 https://www.encodeproject.org/files/ENCFF110DYF/@@download/ENCFF110DYF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/05/20/fcd56ff0-b97e-41be-a41e-a905102a6185/ENCFF110DYF.fastq.gz inconsistent platforms ENCFF562YBS bam bam unfiltered alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF110DYF/, /files/ENCFF018NEO/, /files/ENCFF306EGG/, /files/ENCFF507RYO/ 4168196606 ENCODE Processing Pipeline 29ea3a823b4b855f4f02ecd8c3561aa0 https://www.encodeproject.org/files/ENCFF562YBS/@@download/ENCFF562YBS.bam released s3://encode-public/2016/07/18/c6ddce28-dc25-47dd-b157-3a4938946e9b/ENCFF562YBS.bam ENCODE3 mm10 archived inconsistent platforms ENCFF916TFR bam bam alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF110DYF/, /files/ENCFF018NEO/, /files/ENCFF306EGG/, /files/ENCFF507RYO/ 2792497944 ENCODE Processing Pipeline fa67903582d63e1dc170514d1120eaf4 https://www.encodeproject.org/files/ENCFF916TFR/@@download/ENCFF916TFR.bam released s3://encode-public/2016/07/18/a15f2b6e-8a07-44eb-8bd6-b675b3b8e5b2/ENCFF916TFR.bam ENCODE3 mm10 archived inconsistent platforms ENCFF920YSV bam bam unfiltered alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF743HQG/ 4008720250 ENCODE Processing Pipeline 9cc0e3b7ac76d114164ccbb930ec683c https://www.encodeproject.org/files/ENCFF920YSV/@@download/ENCFF920YSV.bam released s3://encode-public/2020/10/07/6323a5b1-1c3a-4298-8a83-5188340f9ffd/ENCFF920YSV.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF619CXZ bam bam unfiltered alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF309GLL/, /files/ENCFF507RYO/, /files/ENCFF306EGG/, /files/ENCFF110DYF/ 4074532068 ENCODE Processing Pipeline 8cabc689d29152630318afae761032b7 https://www.encodeproject.org/files/ENCFF619CXZ/@@download/ENCFF619CXZ.bam released s3://encode-public/2020/10/07/4b79c5b1-c04d-4db0-b7ac-280a191febd1/ENCFF619CXZ.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF356YGX bam bam alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 1 1_1 50 /files/ENCFF309GLL/, /files/ENCFF743HQG/ 2739822006 ENCODE Processing Pipeline 3690eb50ee497af5cc0cb9248e9e94c1 https://www.encodeproject.org/files/ENCFF356YGX/@@download/ENCFF356YGX.bam released s3://encode-public/2020/10/07/dfddb11f-9879-4c3c-bf76-0842be1fd6be/ENCFF356YGX.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF614OTI bam bam alignments mm10 ENCSR748XBE Control ChIP-seq /mouse-donors/ENCDO956IXV/ UBERON:0001891 midbrain tissue Mus musculus DNA SDS 2015-11-03 ENCODE sonication (generic) 300-500 2 2_1, 2_2, 2_3 50 /files/ENCFF309GLL/, /files/ENCFF507RYO/, /files/ENCFF306EGG/, /files/ENCFF110DYF/ 2865133485 ENCODE Processing Pipeline b67eb8be4cace6051f432072c89ee5f2 https://www.encodeproject.org/files/ENCFF614OTI/@@download/ENCFF614OTI.bam released s3://encode-public/2020/10/07/d6c6705f-41b7-46d6-8567-c83bfb570e4a/ENCFF614OTI.bam ENCODE4 v1.5.1 mm10 released inconsistent platforms ENCFF862OXE fastq fastq reads ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 118604633 Kevin White, UChicago 72b59075685089853f0a9229724948ab https://www.encodeproject.org/files/ENCFF862OXE/@@download/ENCFF862OXE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/f1309c2f-dd28-47d4-b347-b51c62faacaf/ENCFF862OXE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF020ZIX fastq fastq reads ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 460842280 Kevin White, UChicago ef8fb0594ba026dfc6de66dde157a1b0 https://www.encodeproject.org/files/ENCFF020ZIX/@@download/ENCFF020ZIX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/ee8e25ce-45e1-4dc5-aefd-ae4ff8b6a62f/ENCFF020ZIX.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF553ROU bam bam alignments dm3 ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF020ZIX/, /files/ENCFF862OXE/, /files/ENCFF059UHX/ 827956793 Kevin White, UChicago 3b8ccd0c34d7ebf0413d019256ab415f https://www.encodeproject.org/files/ENCFF553ROU/@@download/ENCFF553ROU.bam released s3://encode-public/2018/08/08/a44625a0-ab0c-4758-bf23-bd2930a94232/ENCFF553ROU.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF688APQ bigWig bigWig signal of unique reads dm3 ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF553ROU/ 15149966 Kevin White, UChicago 34c9325fb4290d046da52fadbf3ee4f4 https://www.encodeproject.org/files/ENCFF688APQ/@@download/ENCFF688APQ.bigWig released s3://encode-public/2018/08/08/88b7c628-b956-42b7-b5c1-c54cf2796b4f/ENCFF688APQ.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF769WSF bam bam alignments dm6 ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF020ZIX/, /files/ENCFF862OXE/, /files/ENCFF479RCH/ 826024411 Kevin White, UChicago 54ff027076b58a771d23316cb39e4897 https://www.encodeproject.org/files/ENCFF769WSF/@@download/ENCFF769WSF.bam released s3://encode-public/2018/08/08/7d8cb0ac-4bd8-4358-b800-f7404ef7551a/ENCFF769WSF.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF141IDS bigWig bigWig read-depth normalized signal dm3 ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF553ROU/ 15154019 Kevin White, UChicago c608f52f7a0fecdd675a7b1d8a0bbe33 https://www.encodeproject.org/files/ENCFF141IDS/@@download/ENCFF141IDS.bigWig released s3://encode-public/2018/08/08/fe18d128-8b3c-4708-9156-2f4a4871bd3d/ENCFF141IDS.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF172SFA bigWig bigWig signal of unique reads dm6 ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF769WSF/ 17326803 Kevin White, UChicago 1e77d9bf9d89b91e5fa90e1e248d69f1 https://www.encodeproject.org/files/ENCFF172SFA/@@download/ENCFF172SFA.bigWig released s3://encode-public/2018/08/08/fe861ab0-16d7-4b3b-b6bf-1648191eb686/ENCFF172SFA.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF960CNJ bigWig bigWig read-depth normalized signal dm6 ENCSR144XHB Control ChIP-seq /fly-donors/ENCDO011YZF/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41491/'], '@type': ['Target', 'Item'], 'name': 'svp-dmelanogaster', 'label': 'svp', '@id': '/targets/svp-dmelanogaster/', 'title': 'svp (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'f81b30b9-096e-473f-a952-38566fee1866', 'status': 'released'} dm3 3R 8046747 8140446 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF769WSF/ 17338490 Kevin White, UChicago a26c414d9a9259beb8407c634d3a0648 https://www.encodeproject.org/files/ENCFF960CNJ/@@download/ENCFF960CNJ.bigWig released s3://encode-public/2018/08/08/496835a5-ecbe-4056-b051-27be0cf350b5/ENCFF960CNJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF315OGE fastq fastq reads ENCSR292ARO Control ChIP-seq /fly-donors/ENCDO534RHS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31738/'], '@type': ['Target', 'Item'], 'name': 'Smox-dmelanogaster', 'label': 'Smox', '@id': '/targets/Smox-dmelanogaster/', 'title': 'Smox (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '720b7609-3ecc-43bd-b32e-1853d50c2e3e', 'status': 'released'} dm3 X 7947324 8045669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 798961891 Kevin White, UChicago 891ea67f9012da62dc15b121ed0b045a https://www.encodeproject.org/files/ENCFF315OGE/@@download/ENCFF315OGE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/23/73bf4731-dfe3-440d-bace-367f26319a59/ENCFF315OGE.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF797XKZ bam bam alignments dm3 ENCSR292ARO Control ChIP-seq /fly-donors/ENCDO534RHS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31738/'], '@type': ['Target', 'Item'], 'name': 'Smox-dmelanogaster', 'label': 'Smox', '@id': '/targets/Smox-dmelanogaster/', 'title': 'Smox (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '720b7609-3ecc-43bd-b32e-1853d50c2e3e', 'status': 'released'} dm3 X 7947324 8045669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF059UHX/, /files/ENCFF315OGE/ 1150958301 Kevin White, UChicago fc67f2006b30ade66b76570ad96a2b79 https://www.encodeproject.org/files/ENCFF797XKZ/@@download/ENCFF797XKZ.bam released s3://encode-public/2015/08/03/5f4c9ff4-83ae-42bd-bfe5-791cee82480c/ENCFF797XKZ.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF194EXF bigWig bigWig read-depth normalized signal dm3 ENCSR292ARO Control ChIP-seq /fly-donors/ENCDO534RHS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31738/'], '@type': ['Target', 'Item'], 'name': 'Smox-dmelanogaster', 'label': 'Smox', '@id': '/targets/Smox-dmelanogaster/', 'title': 'Smox (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '720b7609-3ecc-43bd-b32e-1853d50c2e3e', 'status': 'released'} dm3 X 7947324 8045669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF797XKZ/ 15287022 Kevin White, UChicago 5037d84fee286ae6f14f97e2fc179d3e https://www.encodeproject.org/files/ENCFF194EXF/@@download/ENCFF194EXF.bigWig released s3://encode-public/2015/10/06/c0d33c55-3fff-4a8c-97dc-0e268cfb7624/ENCFF194EXF.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF564XZU bigWig bigWig signal of unique reads dm3 ENCSR292ARO Control ChIP-seq /fly-donors/ENCDO534RHS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31738/'], '@type': ['Target', 'Item'], 'name': 'Smox-dmelanogaster', 'label': 'Smox', '@id': '/targets/Smox-dmelanogaster/', 'title': 'Smox (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '720b7609-3ecc-43bd-b32e-1853d50c2e3e', 'status': 'released'} dm3 X 7947324 8045669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF797XKZ/ 15273250 Kevin White, UChicago 10fa5bb7f0045e9dfbdca681d8180be8 https://www.encodeproject.org/files/ENCFF564XZU/@@download/ENCFF564XZU.bigWig released s3://encode-public/2015/10/06/adc38cd4-53c0-439f-bb34-183db3ff1207/ENCFF564XZU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF372ODR bam bam alignments dm6 ENCSR292ARO Control ChIP-seq /fly-donors/ENCDO534RHS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31738/'], '@type': ['Target', 'Item'], 'name': 'Smox-dmelanogaster', 'label': 'Smox', '@id': '/targets/Smox-dmelanogaster/', 'title': 'Smox (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '720b7609-3ecc-43bd-b32e-1853d50c2e3e', 'status': 'released'} dm3 X 7947324 8045669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 49 /files/ENCFF479RCH/, /files/ENCFF315OGE/ 1147687413 Kevin White, UChicago cf26fb9434de3d0c1de1e3b292b9b36a https://www.encodeproject.org/files/ENCFF372ODR/@@download/ENCFF372ODR.bam released s3://encode-public/2016/04/22/26632dda-1c55-40b9-917d-f37f88f34381/ENCFF372ODR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF253IFI bigWig bigWig signal of unique reads dm6 ENCSR292ARO Control ChIP-seq /fly-donors/ENCDO534RHS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31738/'], '@type': ['Target', 'Item'], 'name': 'Smox-dmelanogaster', 'label': 'Smox', '@id': '/targets/Smox-dmelanogaster/', 'title': 'Smox (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '720b7609-3ecc-43bd-b32e-1853d50c2e3e', 'status': 'released'} dm3 X 7947324 8045669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF372ODR/ 17367605 Kevin White, UChicago a66a2a4c0c2ec3cde6a0c448926cea6a https://www.encodeproject.org/files/ENCFF253IFI/@@download/ENCFF253IFI.bigWig released s3://encode-public/2016/06/21/548a0151-c61e-45ae-a6af-a2589191c842/ENCFF253IFI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF020LJM bigWig bigWig read-depth normalized signal dm6 ENCSR292ARO Control ChIP-seq /fly-donors/ENCDO534RHS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31738/'], '@type': ['Target', 'Item'], 'name': 'Smox-dmelanogaster', 'label': 'Smox', '@id': '/targets/Smox-dmelanogaster/', 'title': 'Smox (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '720b7609-3ecc-43bd-b32e-1853d50c2e3e', 'status': 'released'} dm3 X 7947324 8045669 DNA 2016-07-06 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF372ODR/ 17387168 Kevin White, UChicago 54a082829e20f35881979e5ae79adc1a https://www.encodeproject.org/files/ENCFF020LJM/@@download/ENCFF020LJM.bigWig released s3://encode-public/2016/06/21/9f9f0eaf-8acc-4e98-81fd-562e258177b9/ENCFF020LJM.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF267NAR fastq fastq reads ENCSR555GJK Control ChIP-seq /worm-donors/ENCDO399IFB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190925/'], '@type': ['Target', 'Item'], 'name': 'madf-10-celegans', 'label': 'madf-10', '@id': '/targets/madf-10-celegans/', 'title': 'madf-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a321c99d-679d-4688-bdad-6422324e5a72', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 50 single-ended 594256730 Kevin White, UChicago 7ccfdc15542d2c7ad897e7ce868a3de7 https://www.encodeproject.org/files/ENCFF267NAR/@@download/ENCFF267NAR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/29/e2c48e6d-54ab-4b31-908b-ebe8bc2c838e/ENCFF267NAR.fastq.gz missing compliant biosample characterization, missing genetic modification characterization ENCFF482TZJ bam bam alignments ce10 ENCSR555GJK Control ChIP-seq /worm-donors/ENCDO399IFB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190925/'], '@type': ['Target', 'Item'], 'name': 'madf-10-celegans', 'label': 'madf-10', '@id': '/targets/madf-10-celegans/', 'title': 'madf-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a321c99d-679d-4688-bdad-6422324e5a72', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF987UMF/, /files/ENCFF267NAR/ 849213536 Kevin White, UChicago 9d6fdeab7d5eaba0a5b1407ef7308fe3 https://www.encodeproject.org/files/ENCFF482TZJ/@@download/ENCFF482TZJ.bam released s3://encode-public/2015/08/07/3c2ecb90-9d4f-47c2-bd32-0bd95520c949/ENCFF482TZJ.bam Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF029GHH bigWig bigWig signal of unique reads ce10 ENCSR555GJK Control ChIP-seq /worm-donors/ENCDO399IFB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190925/'], '@type': ['Target', 'Item'], 'name': 'madf-10-celegans', 'label': 'madf-10', '@id': '/targets/madf-10-celegans/', 'title': 'madf-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a321c99d-679d-4688-bdad-6422324e5a72', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF482TZJ/ 9958250 Kevin White, UChicago dd0e0ea42cd3b2c7fb1159cb28346109 https://www.encodeproject.org/files/ENCFF029GHH/@@download/ENCFF029GHH.bigWig released s3://encode-public/2015/10/02/d5a3b871-1c1d-48f5-8520-867b78df84fa/ENCFF029GHH.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF339FLB bigWig bigWig read-depth normalized signal ce10 ENCSR555GJK Control ChIP-seq /worm-donors/ENCDO399IFB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190925/'], '@type': ['Target', 'Item'], 'name': 'madf-10-celegans', 'label': 'madf-10', '@id': '/targets/madf-10-celegans/', 'title': 'madf-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a321c99d-679d-4688-bdad-6422324e5a72', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF482TZJ/ 9959811 Kevin White, UChicago 4c4a3901af38a685325a14e28417d464 https://www.encodeproject.org/files/ENCFF339FLB/@@download/ENCFF339FLB.bigWig released s3://encode-public/2015/10/02/07341a2c-ba6f-4572-921a-09155886a6e4/ENCFF339FLB.bigWig Lab custom ce10 archived missing compliant biosample characterization, missing genetic modification characterization ENCFF132EVJ bam bam alignments ce11 ENCSR555GJK Control ChIP-seq /worm-donors/ENCDO399IFB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190925/'], '@type': ['Target', 'Item'], 'name': 'madf-10-celegans', 'label': 'madf-10', '@id': '/targets/madf-10-celegans/', 'title': 'madf-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a321c99d-679d-4688-bdad-6422324e5a72', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 49 /files/ENCFF586MOL/, /files/ENCFF267NAR/ 849926342 Kevin White, UChicago 0a7bd1f33c471c10f7c5eee34016a6fc https://www.encodeproject.org/files/ENCFF132EVJ/@@download/ENCFF132EVJ.bam released s3://encode-public/2016/01/19/216e731e-84c4-4ed5-bce3-ea936e34df65/ENCFF132EVJ.bam Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF521JRK bigWig bigWig signal of unique reads ce11 ENCSR555GJK Control ChIP-seq /worm-donors/ENCDO399IFB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190925/'], '@type': ['Target', 'Item'], 'name': 'madf-10-celegans', 'label': 'madf-10', '@id': '/targets/madf-10-celegans/', 'title': 'madf-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a321c99d-679d-4688-bdad-6422324e5a72', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF132EVJ/ 9953797 Kevin White, UChicago 2f1d4be393f7bd1f9dbedf52702d231a https://www.encodeproject.org/files/ENCFF521JRK/@@download/ENCFF521JRK.bigWig released s3://encode-public/2016/02/03/a3326bf0-84a5-4ba0-9582-3e6fc730897d/ENCFF521JRK.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF623RAX bigWig bigWig read-depth normalized signal ce11 ENCSR555GJK Control ChIP-seq /worm-donors/ENCDO399IFB/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/190925/'], '@type': ['Target', 'Item'], 'name': 'madf-10-celegans', 'label': 'madf-10', '@id': '/targets/madf-10-celegans/', 'title': 'madf-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'a321c99d-679d-4688-bdad-6422324e5a72', 'status': 'released'} DNA 2016-05-10 modERN sonication (generic microtip) 1 1_1 /files/ENCFF132EVJ/ 9954551 Kevin White, UChicago d76ff1ae1457d17a5f2bb24f0fe57d2e https://www.encodeproject.org/files/ENCFF623RAX/@@download/ENCFF623RAX.bigWig released s3://encode-public/2016/02/03/9d0d6a8d-31b0-4992-8092-e3e2c86246cb/ENCFF623RAX.bigWig Lab custom ce11 released missing compliant biosample characterization, missing genetic modification characterization ENCFF267FZI fastq fastq reads ENCSR388VGR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF599PHN/ 2685917882 Michael Snyder, Stanford 516f4c65d2142d1646c73aaf052a2930 SRA:SRR6213542 https://www.encodeproject.org/files/ENCFF267FZI/@@download/ENCFF267FZI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/3ef12aed-b247-489f-a3f2-f3ef8375387a/ENCFF267FZI.fastq.gz mild to moderate bottlenecking ENCFF599PHN fastq fastq reads ENCSR388VGR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF267FZI/ 3284237547 Michael Snyder, Stanford 1854660b69f3f9a3e081dd26c62beb9f SRA:SRR6213542 https://www.encodeproject.org/files/ENCFF599PHN/@@download/ENCFF599PHN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/76bb5d4b-49da-4f55-bc06-77c1e77942dd/ENCFF599PHN.fastq.gz mild to moderate bottlenecking ENCFF975LMN bam bam unfiltered alignments GRCh38 ENCSR388VGR Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA 2017-03-24 ENCODE 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https://www.encodeproject.org/files/ENCFF651XPJ/@@download/ENCFF651XPJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/1af534e1-8cb2-430e-8443-705ecdc521c9/ENCFF651XPJ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF064XSA bam bam alignments dm3 ENCSR497DLP Control ChIP-seq /fly-donors/ENCDO606IIS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39440/'], '@type': ['Target', 'Item'], 'name': 'caup-dmelanogaster', 'label': 'caup', '@id': '/targets/caup-dmelanogaster/', 'title': 'caup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '233f94e6-c5c2-41b2-83a3-2a9cdbb2ca7e', 'status': 'released'} dm3 3L 12568833 12655247 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF651XPJ/ 1483370521 Kevin White, UChicago b0fe17b721083fcbb592b97658628397 https://www.encodeproject.org/files/ENCFF064XSA/@@download/ENCFF064XSA.bam released s3://encode-public/2017/09/12/bdff2a6f-7c73-4f89-9be9-0aae9c8b9661/ENCFF064XSA.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF349CST bam bam alignments dm6 ENCSR497DLP Control ChIP-seq /fly-donors/ENCDO606IIS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39440/'], '@type': ['Target', 'Item'], 'name': 'caup-dmelanogaster', 'label': 'caup', '@id': '/targets/caup-dmelanogaster/', 'title': 'caup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '233f94e6-c5c2-41b2-83a3-2a9cdbb2ca7e', 'status': 'released'} dm3 3L 12568833 12655247 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF651XPJ/ 1468206110 Kevin White, UChicago 450938d104938007103852d3b89f6013 https://www.encodeproject.org/files/ENCFF349CST/@@download/ENCFF349CST.bam released s3://encode-public/2017/09/18/ad066ab3-21a2-41c8-9df5-efc9b1e2d2ee/ENCFF349CST.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF807XJP bigWig bigWig signal of unique reads dm3 ENCSR497DLP Control ChIP-seq /fly-donors/ENCDO606IIS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39440/'], '@type': ['Target', 'Item'], 'name': 'caup-dmelanogaster', 'label': 'caup', '@id': '/targets/caup-dmelanogaster/', 'title': 'caup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '233f94e6-c5c2-41b2-83a3-2a9cdbb2ca7e', 'status': 'released'} dm3 3L 12568833 12655247 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF064XSA/ 15555864 Kevin White, UChicago da5298cbefd5fd326cbed34feaf203aa https://www.encodeproject.org/files/ENCFF807XJP/@@download/ENCFF807XJP.bigWig released s3://encode-public/2017/09/18/a7dcc9ec-7089-461f-b142-e6ee887263f3/ENCFF807XJP.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF796WZX bigWig bigWig read-depth normalized signal dm3 ENCSR497DLP Control ChIP-seq /fly-donors/ENCDO606IIS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39440/'], '@type': ['Target', 'Item'], 'name': 'caup-dmelanogaster', 'label': 'caup', '@id': '/targets/caup-dmelanogaster/', 'title': 'caup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '233f94e6-c5c2-41b2-83a3-2a9cdbb2ca7e', 'status': 'released'} dm3 3L 12568833 12655247 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF064XSA/ 15542280 Kevin White, UChicago 16f74e00f4efabcbb03113205ed6cd79 https://www.encodeproject.org/files/ENCFF796WZX/@@download/ENCFF796WZX.bigWig released s3://encode-public/2017/09/18/e99fea51-da69-4e6c-beee-f470ab8a78f8/ENCFF796WZX.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF679YQP bigWig bigWig signal of unique reads dm6 ENCSR497DLP Control ChIP-seq /fly-donors/ENCDO606IIS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39440/'], '@type': ['Target', 'Item'], 'name': 'caup-dmelanogaster', 'label': 'caup', '@id': '/targets/caup-dmelanogaster/', 'title': 'caup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '233f94e6-c5c2-41b2-83a3-2a9cdbb2ca7e', 'status': 'released'} dm3 3L 12568833 12655247 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF349CST/ 17754075 Kevin White, UChicago 7f85db889a9a0a67d7d244d3719c7f1a https://www.encodeproject.org/files/ENCFF679YQP/@@download/ENCFF679YQP.bigWig released s3://encode-public/2017/09/18/c026d22f-661d-40c7-b2dc-3d3e121e468b/ENCFF679YQP.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF797BOJ bigWig bigWig read-depth normalized signal dm6 ENCSR497DLP Control ChIP-seq /fly-donors/ENCDO606IIS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39440/'], '@type': ['Target', 'Item'], 'name': 'caup-dmelanogaster', 'label': 'caup', '@id': '/targets/caup-dmelanogaster/', 'title': 'caup (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '233f94e6-c5c2-41b2-83a3-2a9cdbb2ca7e', 'status': 'released'} dm3 3L 12568833 12655247 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF349CST/ 17733043 Kevin White, UChicago 51839f942f6274e9625565b4c9f82ba1 https://www.encodeproject.org/files/ENCFF797BOJ/@@download/ENCFF797BOJ.bigWig released s3://encode-public/2017/09/18/42565f8e-3538-4881-b385-f8f9a2b370fd/ENCFF797BOJ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF014UUQ fastq fastq reads ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 131379522 Michael Snyder, Stanford a65b81d80a4779f59fd6bd047bada7fb https://www.encodeproject.org/files/ENCFF014UUQ/@@download/ENCFF014UUQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/419a6a7d-e3c1-4a7a-8a9d-e98e793a4af3/ENCFF014UUQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF952XEA fastq fastq reads ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 119093418 Michael Snyder, Stanford 8857a484fea5d38c1b88846f324002de https://www.encodeproject.org/files/ENCFF952XEA/@@download/ENCFF952XEA.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/6a721057-b8bd-4221-91ca-4c708e07b84e/ENCFF952XEA.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF124LIV bam bam alignments ce10 ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF014UUQ/, /files/ENCFF952XEA/, /files/ENCFF987UMF/ 278811411 Kevin White, UChicago b3b11592a640ce5950757d846dbbd6d9 https://www.encodeproject.org/files/ENCFF124LIV/@@download/ENCFF124LIV.bam released s3://encode-public/2017/04/27/fd2d5166-043d-4778-870a-a068cf883d73/ENCFF124LIV.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF410YBL bam bam alignments ce11 ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF014UUQ/, /files/ENCFF952XEA/, /files/ENCFF586MOL/ 279068376 Kevin White, UChicago 98748dd433cf2e4fe57b166e2df97bef https://www.encodeproject.org/files/ENCFF410YBL/@@download/ENCFF410YBL.bam released s3://encode-public/2017/04/27/6bac70c5-ed58-427b-b6d8-961af5ee076f/ENCFF410YBL.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF415EDS bigWig bigWig read-depth normalized signal ce10 ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF124LIV/ 10026672 Kevin White, UChicago efa6263530c2534271e00bdd875011ff https://www.encodeproject.org/files/ENCFF415EDS/@@download/ENCFF415EDS.bigWig released s3://encode-public/2017/04/29/81b42e71-91a4-4cd5-8596-2702489e08ae/ENCFF415EDS.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF938AJM bigWig bigWig signal of unique reads ce10 ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF124LIV/ 9992924 Kevin White, UChicago 331136c8c9165a091fe2f4b929027997 https://www.encodeproject.org/files/ENCFF938AJM/@@download/ENCFF938AJM.bigWig released s3://encode-public/2017/04/29/70308765-cacd-4f3d-aa35-fc8a06381f53/ENCFF938AJM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF232DJM bigWig bigWig read-depth normalized signal ce11 ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF410YBL/ 10036960 Kevin White, UChicago 1f00d44631009c88c1d42922325ff688 https://www.encodeproject.org/files/ENCFF232DJM/@@download/ENCFF232DJM.bigWig released s3://encode-public/2017/04/29/8b59990c-526c-406c-b1e5-cba08a93c397/ENCFF232DJM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF399UMM bigWig bigWig signal of unique reads ce11 ENCSR569BKC Control ChIP-seq /worm-donors/ENCDO884DAW/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/191623/'], '@type': ['Target', 'Item'], 'name': 'unc-39-celegans', 'label': 'unc-39', '@id': '/targets/unc-39-celegans/', 'title': 'unc-39 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'f5a7cf0c-6ea7-4377-ad06-8016a36f623b', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF410YBL/ 10003645 Kevin White, UChicago d74101944e43b7e872eaa4de33651204 https://www.encodeproject.org/files/ENCFF399UMM/@@download/ENCFF399UMM.bigWig released s3://encode-public/2017/04/29/97e88765-85c4-4706-acb6-e236bf310f54/ENCFF399UMM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF355KPE fastq fastq reads ENCSR594SSF Control ChIP-seq /fly-donors/ENCDO451ZUB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43531/'], '@type': ['Target', 'Item'], 'name': 'CG15514-dmelanogaster', 'label': 'CG15514', '@id': '/targets/CG15514-dmelanogaster/', 'title': 'CG15514 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '91a4a1a9-59c4-438d-8eb4-b00968d6afa4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 452388008 Kevin White, UChicago fff4ce0d55926b8883e7a1b4547529db https://www.encodeproject.org/files/ENCFF355KPE/@@download/ENCFF355KPE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/4a1ae752-4059-441c-a96e-2027bb98d08e/ENCFF355KPE.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF327VAX bam bam alignments dm3 ENCSR594SSF Control ChIP-seq /fly-donors/ENCDO451ZUB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43531/'], '@type': ['Target', 'Item'], 'name': 'CG15514-dmelanogaster', 'label': 'CG15514', '@id': '/targets/CG15514-dmelanogaster/', 'title': 'CG15514 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '91a4a1a9-59c4-438d-8eb4-b00968d6afa4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF355KPE/ 603380915 Kevin White, UChicago 735511455b8022ac1742b7fa76b62cc8 https://www.encodeproject.org/files/ENCFF327VAX/@@download/ENCFF327VAX.bam released s3://encode-public/2017/09/12/20189869-7ba0-414c-9ea2-e19aab8ecbac/ENCFF327VAX.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF176IKP bam bam alignments dm6 ENCSR594SSF Control ChIP-seq /fly-donors/ENCDO451ZUB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43531/'], '@type': ['Target', 'Item'], 'name': 'CG15514-dmelanogaster', 'label': 'CG15514', '@id': '/targets/CG15514-dmelanogaster/', 'title': 'CG15514 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '91a4a1a9-59c4-438d-8eb4-b00968d6afa4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF355KPE/ 595729924 Kevin White, UChicago 729910e5733cb6c03716286e52c8f9ee https://www.encodeproject.org/files/ENCFF176IKP/@@download/ENCFF176IKP.bam released s3://encode-public/2017/09/13/741a35a8-44a2-4b41-acde-cfa867eae861/ENCFF176IKP.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF711LVL bigWig bigWig signal of unique reads dm3 ENCSR594SSF Control ChIP-seq /fly-donors/ENCDO451ZUB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43531/'], '@type': ['Target', 'Item'], 'name': 'CG15514-dmelanogaster', 'label': 'CG15514', '@id': '/targets/CG15514-dmelanogaster/', 'title': 'CG15514 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '91a4a1a9-59c4-438d-8eb4-b00968d6afa4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF327VAX/ 15232497 Kevin White, UChicago 700ff054441067ed28f9f15a89c712d1 https://www.encodeproject.org/files/ENCFF711LVL/@@download/ENCFF711LVL.bigWig released s3://encode-public/2017/09/13/8d5c53b4-141f-439b-ad2a-e9971021034e/ENCFF711LVL.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF439TNU bigWig bigWig read-depth normalized signal dm3 ENCSR594SSF Control ChIP-seq /fly-donors/ENCDO451ZUB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43531/'], '@type': ['Target', 'Item'], 'name': 'CG15514-dmelanogaster', 'label': 'CG15514', '@id': '/targets/CG15514-dmelanogaster/', 'title': 'CG15514 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '91a4a1a9-59c4-438d-8eb4-b00968d6afa4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF327VAX/ 15232209 Kevin White, UChicago af502f1c531095385adf8d68f6a8b0b4 https://www.encodeproject.org/files/ENCFF439TNU/@@download/ENCFF439TNU.bigWig released s3://encode-public/2017/09/13/c63c780d-6ae2-4d18-bb4c-c1d46b4e357a/ENCFF439TNU.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF130WPY bigWig bigWig signal of unique reads dm6 ENCSR594SSF Control ChIP-seq /fly-donors/ENCDO451ZUB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43531/'], '@type': ['Target', 'Item'], 'name': 'CG15514-dmelanogaster', 'label': 'CG15514', '@id': '/targets/CG15514-dmelanogaster/', 'title': 'CG15514 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '91a4a1a9-59c4-438d-8eb4-b00968d6afa4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF176IKP/ 17421526 Kevin White, UChicago 1ffe3372d2a50ae2e76ae2b8da3c9af5 https://www.encodeproject.org/files/ENCFF130WPY/@@download/ENCFF130WPY.bigWig released s3://encode-public/2017/09/14/a272df76-a359-4e10-8762-ca0aaa71acdb/ENCFF130WPY.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF922RVJ bigWig bigWig read-depth normalized signal dm6 ENCSR594SSF Control ChIP-seq /fly-donors/ENCDO451ZUB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/43531/'], '@type': ['Target', 'Item'], 'name': 'CG15514-dmelanogaster', 'label': 'CG15514', '@id': '/targets/CG15514-dmelanogaster/', 'title': 'CG15514 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '91a4a1a9-59c4-438d-8eb4-b00968d6afa4', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF176IKP/ 17428314 Kevin White, UChicago 201771662000626e92d38e08f598a387 https://www.encodeproject.org/files/ENCFF922RVJ/@@download/ENCFF922RVJ.bigWig released s3://encode-public/2017/09/14/5709cec6-2c02-42c1-8c5f-32eddd3644b9/ENCFF922RVJ.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF451WLP bam bam redacted alignments GRCh38 ENCSR459LGY Control ChIP-seq /human-donors/ENCDO918HJM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF326XKW/ 306372754 ENCODE Processing Pipeline 148f718edb8e7f77221c6c4c1c09005b https://www.encodeproject.org/files/ENCFF451WLP/@@download/ENCFF451WLP.bam released s3://encode-public/2017/11/09/ad0dedcc-5fdc-4e8f-81e4-2e60c20015ad/ENCFF451WLP.bam ENCODE3 GRCh38 archived ENCFF802MNB bam bam redacted unfiltered alignments GRCh38 ENCSR459LGY Control ChIP-seq /human-donors/ENCDO918HJM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF643CGH/, /files/ENCFF326XKW/ 379645635 ENCODE Processing Pipeline ce260e42dc28ba85dcc4e3a421ea1d7d https://www.encodeproject.org/files/ENCFF802MNB/@@download/ENCFF802MNB.bam released s3://encode-public/2017/11/09/1937d540-59ff-4d8e-ae90-b33cdffae52b/ENCFF802MNB.bam ENCODE3 GRCh38 archived ENCFF744VJU bam bam redacted unfiltered alignments hg19 ENCSR459LGY Control ChIP-seq /human-donors/ENCDO918HJM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF326XKW/ 372934796 ENCODE Processing Pipeline b64b55dbd3b2a47275748e52024712a9 https://www.encodeproject.org/files/ENCFF744VJU/@@download/ENCFF744VJU.bam released s3://encode-public/2018/01/20/2e40f4d5-6482-4d56-937c-a3c703ef12c3/ENCFF744VJU.bam ENCODE3 hg19 archived ENCFF737NBL bam bam redacted alignments hg19 ENCSR459LGY Control ChIP-seq /human-donors/ENCDO918HJM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF807MUK/, /files/ENCFF326XKW/ 305911261 ENCODE Processing Pipeline 5504c0f0d1ef5f14a63fb04d33806df2 https://www.encodeproject.org/files/ENCFF737NBL/@@download/ENCFF737NBL.bam released s3://encode-public/2018/01/20/b5b0c176-4ba3-40be-95d5-de20d8d95057/ENCFF737NBL.bam ENCODE3 hg19 archived ENCFF515SBT bam bam redacted alignments GRCh38 ENCSR459LGY Control ChIP-seq /human-donors/ENCDO918HJM/ UBERON:0007106 chorionic villus tissue Homo sapiens DNA 2013-07-31 Roadmap 1 1_1 75 /files/ENCFF346IEC/, /files/ENCFF110MCL/ 1872949942 ENCODE Processing Pipeline f9392a67faba1b4adc242316844fc95e https://www.encodeproject.org/files/ENCFF515SBT/@@download/ENCFF515SBT.bam released s3://encode-public/2021/01/28/cc75cea6-06d4-4e51-bb11-385d40f0c41c/ENCFF515SBT.bam ENCODE4 v1.7.0 GRCh38 released ENCFF347NHA fastq fastq reads ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF027HUL/ 2452541275 Michael Snyder, Stanford 3e4a57fbc4fd88076f27bc9ed037cb4a SRA:SRR6213695 https://www.encodeproject.org/files/ENCFF347NHA/@@download/ENCFF347NHA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/b3ca3ec8-d2fb-489a-b2e9-180cf4f0a348/ENCFF347NHA.fastq.gz mild to moderate bottlenecking ENCFF027HUL fastq fastq reads ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF347NHA/ 2917989539 Michael Snyder, Stanford 002a4b9657173e252c9485c711eccd70 SRA:SRR6213695 https://www.encodeproject.org/files/ENCFF027HUL/@@download/ENCFF027HUL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/4d3bdb36-7355-434b-841a-6b950537fa29/ENCFF027HUL.fastq.gz mild to moderate bottlenecking ENCFF433PWX bam bam unfiltered alignments GRCh38 ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF347NHA/, /files/ENCFF643CGH/, /files/ENCFF027HUL/ 5273103343 ENCODE Processing Pipeline 710fa1329b7ca97a5ae1daa03bab2a13 https://www.encodeproject.org/files/ENCFF433PWX/@@download/ENCFF433PWX.bam released s3://encode-public/2017/03/23/52dbccb0-88ed-4a3d-866e-e2c99bc873e9/ENCFF433PWX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF945IMB bam bam unfiltered alignments hg19 ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF347NHA/, /files/ENCFF807MUK/, /files/ENCFF027HUL/ 5263499633 ENCODE Processing Pipeline 4e659d7e77ce072df691b1e097ae2dc4 https://www.encodeproject.org/files/ENCFF945IMB/@@download/ENCFF945IMB.bam released s3://encode-public/2017/03/23/76f5c43c-dcb7-46ff-90bb-02d4df74b811/ENCFF945IMB.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF640GGJ bam bam alignments GRCh38 ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF347NHA/, /files/ENCFF643CGH/, /files/ENCFF027HUL/ 4043602564 ENCODE Processing Pipeline c5609ffb7f72b84a7ce5006c037127c4 https://www.encodeproject.org/files/ENCFF640GGJ/@@download/ENCFF640GGJ.bam released s3://encode-public/2017/03/23/cf0abb5f-0c8d-4e16-ae3a-133bf7b8ff2d/ENCFF640GGJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF122KYV bam bam alignments hg19 ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF347NHA/, /files/ENCFF807MUK/, /files/ENCFF027HUL/ 4037408620 ENCODE Processing Pipeline c6805b7ed38d82bd65fd6025efc66bd7 https://www.encodeproject.org/files/ENCFF122KYV/@@download/ENCFF122KYV.bam released s3://encode-public/2017/03/23/160f8e76-5c82-42e2-a0ef-6186d506ec75/ENCFF122KYV.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF396ZYR bam bam unfiltered alignments GRCh38 ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF347NHA/, /files/ENCFF027HUL/ 5267988925 ENCODE Processing Pipeline a50fdb59a4e078ef4cbfda6bd5d5c9d4 https://www.encodeproject.org/files/ENCFF396ZYR/@@download/ENCFF396ZYR.bam released s3://encode-public/2020/06/02/b0189553-84d9-49aa-919b-3ea0a0ca785a/ENCFF396ZYR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF605HZX bam bam alignments GRCh38 ENCSR475HOV Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0036149 suprapubic skin tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF347NHA/, /files/ENCFF027HUL/ 3966005824 ENCODE Processing Pipeline 9f0a06b2b786aeb174e7d498a2f94c2d https://www.encodeproject.org/files/ENCFF605HZX/@@download/ENCFF605HZX.bam released s3://encode-public/2020/06/02/cdc30cf7-0c3d-4d36-a17e-4c42a51b6ad9/ENCFF605HZX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF760ETA fastq fastq reads ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 1 /files/ENCFF725DAD/ 4055580184 Richard Myers, HAIB 586f1e4fd06748b17b5da5041f8ae3e2 SRA:SRR8660111 https://www.encodeproject.org/files/ENCFF760ETA/@@download/ENCFF760ETA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/a19ae4f3-117f-4cb0-90c3-25fd7b7bccd0/ENCFF760ETA.fastq.gz ENCFF725DAD fastq fastq reads ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 paired-ended 2 /files/ENCFF760ETA/ 4156161531 Richard Myers, HAIB 9200d991db9dfa95548294d04c1bccc6 SRA:SRR8660111 https://www.encodeproject.org/files/ENCFF725DAD/@@download/ENCFF725DAD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/01/31/943da645-6dff-4574-ba23-c7fc7f962bb2/ENCFF725DAD.fastq.gz ENCFF449USF bam bam unfiltered alignments GRCh38 ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF725DAD/, /files/ENCFF643CGH/, /files/ENCFF760ETA/ 9262040637 ENCODE Processing Pipeline 44c053fa3c5146140e46d57790104c04 https://www.encodeproject.org/files/ENCFF449USF/@@download/ENCFF449USF.bam released s3://encode-public/2017/02/02/8bb6cf04-2e06-4eea-8f28-5cbab74b30c8/ENCFF449USF.bam ENCODE3 GRCh38 archived ENCFF272GLK bam bam alignments GRCh38 ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF725DAD/, /files/ENCFF643CGH/, /files/ENCFF760ETA/ 6292927848 ENCODE Processing Pipeline 588f66eb1d5f774e1eef063c166ad139 https://www.encodeproject.org/files/ENCFF272GLK/@@download/ENCFF272GLK.bam released s3://encode-public/2017/02/02/0be5cb41-a586-4b08-8637-954da761687f/ENCFF272GLK.bam ENCODE3 GRCh38 archived ENCFF833CDU bam bam unfiltered alignments hg19 ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF725DAD/, /files/ENCFF807MUK/, /files/ENCFF760ETA/ 9230009758 ENCODE Processing Pipeline 28aeed7060ecd7022b71b1079d95b9ce https://www.encodeproject.org/files/ENCFF833CDU/@@download/ENCFF833CDU.bam released s3://encode-public/2017/02/02/a3f7cce4-c095-4936-b945-e021f215bee5/ENCFF833CDU.bam ENCODE3 hg19 archived ENCFF209HOQ bam bam alignments hg19 ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF725DAD/, /files/ENCFF807MUK/, /files/ENCFF760ETA/ 6286203825 ENCODE Processing Pipeline e71135ac4cb3ae095d22db29bc17b73a https://www.encodeproject.org/files/ENCFF209HOQ/@@download/ENCFF209HOQ.bam released s3://encode-public/2017/02/02/ce56d26c-cdeb-4062-a513-73470f79c209/ENCFF209HOQ.bam ENCODE3 hg19 archived ENCFF134MUJ bam bam unfiltered alignments GRCh38 ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF725DAD/, /files/ENCFF760ETA/ 9766260501 ENCODE Processing Pipeline 7178179d3a2cbc1a0604e474fb12b2af https://www.encodeproject.org/files/ENCFF134MUJ/@@download/ENCFF134MUJ.bam released s3://encode-public/2020/06/24/e854bbc1-b511-48eb-9427-bef001f2ca82/ENCFF134MUJ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF170HCG bam bam alignments GRCh38 ENCSR703OGS Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0008952 upper lobe of left lung tissue Homo sapiens DNA formaldehyde 2017-02-02 ENCODE sonication (generic) 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF725DAD/, /files/ENCFF760ETA/ 6242497337 ENCODE Processing Pipeline 144c60d6aa0f58df85ac5463abaf7fa8 https://www.encodeproject.org/files/ENCFF170HCG/@@download/ENCFF170HCG.bam released s3://encode-public/2020/06/24/acf64a3f-78f8-405f-9896-32e6f6074572/ENCFF170HCG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF391BZN fastq fastq reads ENCSR238IHN Control ChIP-seq /fly-donors/ENCDO978OWV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38381/'], '@type': ['Target', 'Item'], 'name': 'Asciz-dmelanogaster', 'label': 'Asciz', '@id': '/targets/Asciz-dmelanogaster/', 'title': 'Asciz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06c5c36b-05d7-48fc-8be3-0e45ccc8c866', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 660747012 Kevin White, UChicago 4259025bba9a99b5367f827239de9857 https://www.encodeproject.org/files/ENCFF391BZN/@@download/ENCFF391BZN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/dab1d7d3-650d-45b5-8770-2406969460ca/ENCFF391BZN.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF985BIO bam bam alignments dm3 ENCSR238IHN Control ChIP-seq /fly-donors/ENCDO978OWV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38381/'], '@type': ['Target', 'Item'], 'name': 'Asciz-dmelanogaster', 'label': 'Asciz', '@id': '/targets/Asciz-dmelanogaster/', 'title': 'Asciz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06c5c36b-05d7-48fc-8be3-0e45ccc8c866', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF391BZN/ 890702934 Kevin White, UChicago 46eb2486be729e9829c23edf95af0547 https://www.encodeproject.org/files/ENCFF985BIO/@@download/ENCFF985BIO.bam released s3://encode-public/2017/09/12/8e26937d-fc14-4987-a7fe-e08f7f6831c5/ENCFF985BIO.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF158ZJS bam bam alignments dm6 ENCSR238IHN Control ChIP-seq /fly-donors/ENCDO978OWV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38381/'], '@type': ['Target', 'Item'], 'name': 'Asciz-dmelanogaster', 'label': 'Asciz', '@id': '/targets/Asciz-dmelanogaster/', 'title': 'Asciz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06c5c36b-05d7-48fc-8be3-0e45ccc8c866', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF391BZN/ 881004841 Kevin White, UChicago 7e36aec2fef86b5627342e673812e811 https://www.encodeproject.org/files/ENCFF158ZJS/@@download/ENCFF158ZJS.bam released s3://encode-public/2017/09/13/dbc1906a-74a6-4784-b485-25da295b1410/ENCFF158ZJS.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF163OVA bigWig bigWig signal of unique reads dm3 ENCSR238IHN Control ChIP-seq /fly-donors/ENCDO978OWV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38381/'], '@type': ['Target', 'Item'], 'name': 'Asciz-dmelanogaster', 'label': 'Asciz', '@id': '/targets/Asciz-dmelanogaster/', 'title': 'Asciz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06c5c36b-05d7-48fc-8be3-0e45ccc8c866', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF985BIO/ 15353288 Kevin White, UChicago e2945467b96733192fbc209650960d78 https://www.encodeproject.org/files/ENCFF163OVA/@@download/ENCFF163OVA.bigWig released s3://encode-public/2017/09/13/077c80e3-adf5-450e-9310-5c4fdf3e4c0c/ENCFF163OVA.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF621KXQ bigWig bigWig read-depth normalized signal dm3 ENCSR238IHN Control ChIP-seq /fly-donors/ENCDO978OWV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38381/'], '@type': ['Target', 'Item'], 'name': 'Asciz-dmelanogaster', 'label': 'Asciz', '@id': '/targets/Asciz-dmelanogaster/', 'title': 'Asciz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06c5c36b-05d7-48fc-8be3-0e45ccc8c866', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF985BIO/ 15356404 Kevin White, UChicago 471af12e01f87a43390cf4b16b65f36f https://www.encodeproject.org/files/ENCFF621KXQ/@@download/ENCFF621KXQ.bigWig released s3://encode-public/2017/09/13/e3457216-4a2a-445b-aa9f-76adb66d191f/ENCFF621KXQ.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF132ETT bigWig bigWig signal of unique reads dm6 ENCSR238IHN Control ChIP-seq /fly-donors/ENCDO978OWV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38381/'], '@type': ['Target', 'Item'], 'name': 'Asciz-dmelanogaster', 'label': 'Asciz', '@id': '/targets/Asciz-dmelanogaster/', 'title': 'Asciz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06c5c36b-05d7-48fc-8be3-0e45ccc8c866', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF158ZJS/ 17535085 Kevin White, UChicago fad3fe7b26788976f7da1a9e8410a02b https://www.encodeproject.org/files/ENCFF132ETT/@@download/ENCFF132ETT.bigWig released s3://encode-public/2017/09/14/79bbbe2c-0d37-4d1c-8bb3-22c8722ba589/ENCFF132ETT.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF465UPA bigWig bigWig read-depth normalized signal dm6 ENCSR238IHN Control ChIP-seq /fly-donors/ENCDO978OWV/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38381/'], '@type': ['Target', 'Item'], 'name': 'Asciz-dmelanogaster', 'label': 'Asciz', '@id': '/targets/Asciz-dmelanogaster/', 'title': 'Asciz (Drosophila melanogaster)', 'investigated_as': ['other context'], 'uuid': '06c5c36b-05d7-48fc-8be3-0e45ccc8c866', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF158ZJS/ 17529880 Kevin White, UChicago 568ab77b71c4ccf4c71211260442fe69 https://www.encodeproject.org/files/ENCFF465UPA/@@download/ENCFF465UPA.bigWig released s3://encode-public/2017/09/14/500827a9-4b86-483d-a55e-df50f62eee28/ENCFF465UPA.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF331RNL fastq fastq reads ENCSR955OYW Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 741374529 Bradley Bernstein, Broad 19f60cd1f62ffbf0ae554ef45d36cd39 SRA:SRR13804664 https://www.encodeproject.org/files/ENCFF331RNL/@@download/ENCFF331RNL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/bb51c74d-71c4-42df-8f1c-cce71cde0d28/ENCFF331RNL.fastq.gz ENCFF036CPR fastq fastq reads ENCSR955OYW Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 734021792 Bradley Bernstein, Broad c29effaaca8058cb7c0a77a239fd76c5 SRA:SRR13804665 https://www.encodeproject.org/files/ENCFF036CPR/@@download/ENCFF036CPR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/894ffae6-9950-4198-9a08-f60ed5947fa6/ENCFF036CPR.fastq.gz ENCFF132QOQ fastq fastq reads ENCSR955OYW Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 728036611 Bradley Bernstein, Broad 90b51b6b8c0e57bff2925013cdb086f7 SRA:SRR13804666 https://www.encodeproject.org/files/ENCFF132QOQ/@@download/ENCFF132QOQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/59fb6520-2196-4726-805c-39bfa3db6546/ENCFF132QOQ.fastq.gz ENCFF223ABD fastq fastq reads ENCSR955OYW Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 single-ended 720590906 Bradley Bernstein, Broad 7d6fe2074855b591f2beca055073cc38 SRA:SRR13804667 https://www.encodeproject.org/files/ENCFF223ABD/@@download/ENCFF223ABD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/cf2ecd6f-3413-4f19-9cb2-86768baef8d7/ENCFF223ABD.fastq.gz ENCFF772XIK bam bam alignments GRCh38 ENCSR955OYW Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF223ABD/, /files/ENCFF036CPR/, /files/ENCFF331RNL/, /files/ENCFF132QOQ/ 2490221519 ENCODE Processing Pipeline 16a74ab28d555ff4d0f61d70910f1d6a https://www.encodeproject.org/files/ENCFF772XIK/@@download/ENCFF772XIK.bam released s3://encode-public/2020/07/08/9b48873a-ad3f-4629-b0aa-f6366146d05c/ENCFF772XIK.bam ENCODE4 v1.5.0 GRCh38 released ENCFF792CSJ bam bam unfiltered alignments GRCh38 ENCSR955OYW Control ChIP-seq /human-donors/ENCDO856ZOJ/ UBERON:0002106 spleen tissue Homo sapiens DNA 2020-09-03 ENCODE 200-600 1 1_1 76 /files/ENCFF110MCL/, /files/ENCFF223ABD/, /files/ENCFF036CPR/, /files/ENCFF331RNL/, /files/ENCFF132QOQ/ 2937227522 ENCODE Processing Pipeline 881022b116f27a8524effc384ff85904 https://www.encodeproject.org/files/ENCFF792CSJ/@@download/ENCFF792CSJ.bam released s3://encode-public/2020/07/08/abc49105-d78f-4621-9d2e-44a8e313cb63/ENCFF792CSJ.bam ENCODE4 v1.5.0 GRCh38 released ENCFF798EOW fastq fastq reads ENCSR615VYC Control ChIP-seq /fly-donors/ENCDO860JKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41394/'], '@type': ['Target', 'Item'], 'name': 'CG6808-dmelanogaster', 'label': 'CG6808', '@id': '/targets/CG6808-dmelanogaster/', 'title': 'CG6808 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '089f872f-2394-49e9-a423-83c0e5dc5373', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 714094877 Kevin White, UChicago 7af8686aec554840e6e5faf613915e92 https://www.encodeproject.org/files/ENCFF798EOW/@@download/ENCFF798EOW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/403e36ba-3826-474d-80af-6dd0f248b561/ENCFF798EOW.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF384AQB bam bam alignments dm3 ENCSR615VYC Control ChIP-seq /fly-donors/ENCDO860JKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41394/'], '@type': ['Target', 'Item'], 'name': 'CG6808-dmelanogaster', 'label': 'CG6808', '@id': '/targets/CG6808-dmelanogaster/', 'title': 'CG6808 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '089f872f-2394-49e9-a423-83c0e5dc5373', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF798EOW/ 950088603 Kevin White, UChicago 7cc01ef634de4792e263321e1fd235dc https://www.encodeproject.org/files/ENCFF384AQB/@@download/ENCFF384AQB.bam released s3://encode-public/2017/09/12/427f6f88-e58b-4f08-87c7-8cd074ee755f/ENCFF384AQB.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF048IPD bam bam alignments dm6 ENCSR615VYC Control ChIP-seq /fly-donors/ENCDO860JKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41394/'], '@type': ['Target', 'Item'], 'name': 'CG6808-dmelanogaster', 'label': 'CG6808', '@id': '/targets/CG6808-dmelanogaster/', 'title': 'CG6808 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '089f872f-2394-49e9-a423-83c0e5dc5373', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF798EOW/ 943828010 Kevin White, UChicago 6b50fe795605d825061db930e7882c06 https://www.encodeproject.org/files/ENCFF048IPD/@@download/ENCFF048IPD.bam released s3://encode-public/2017/09/13/19f663b3-c251-4197-9b1e-ab609ae3a10e/ENCFF048IPD.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF502EUH bigWig bigWig read-depth normalized signal dm3 ENCSR615VYC Control ChIP-seq /fly-donors/ENCDO860JKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41394/'], '@type': ['Target', 'Item'], 'name': 'CG6808-dmelanogaster', 'label': 'CG6808', '@id': '/targets/CG6808-dmelanogaster/', 'title': 'CG6808 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '089f872f-2394-49e9-a423-83c0e5dc5373', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF384AQB/ 15318752 Kevin White, UChicago 5b97ac960caf3c28e604ca478d25f862 https://www.encodeproject.org/files/ENCFF502EUH/@@download/ENCFF502EUH.bigWig released s3://encode-public/2017/09/13/d9bf569f-11f2-44da-8483-302e6db4cc52/ENCFF502EUH.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF050SMT bigWig bigWig signal of unique reads dm3 ENCSR615VYC Control ChIP-seq /fly-donors/ENCDO860JKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41394/'], '@type': ['Target', 'Item'], 'name': 'CG6808-dmelanogaster', 'label': 'CG6808', '@id': '/targets/CG6808-dmelanogaster/', 'title': 'CG6808 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '089f872f-2394-49e9-a423-83c0e5dc5373', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF384AQB/ 15314325 Kevin White, UChicago 2ecf7fd026386156565dece9ab534de9 https://www.encodeproject.org/files/ENCFF050SMT/@@download/ENCFF050SMT.bigWig released s3://encode-public/2017/09/13/45d98f22-e448-4404-a968-cf04fbdef830/ENCFF050SMT.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF715FGT bigWig bigWig signal of unique reads dm6 ENCSR615VYC Control ChIP-seq /fly-donors/ENCDO860JKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41394/'], '@type': ['Target', 'Item'], 'name': 'CG6808-dmelanogaster', 'label': 'CG6808', '@id': '/targets/CG6808-dmelanogaster/', 'title': 'CG6808 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '089f872f-2394-49e9-a423-83c0e5dc5373', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF048IPD/ 17517647 Kevin White, UChicago 7db3716ffbbbf7531cf1bc20ef0e8aac https://www.encodeproject.org/files/ENCFF715FGT/@@download/ENCFF715FGT.bigWig released s3://encode-public/2017/09/14/417e217e-03ec-4ef7-8206-7cd859b86c72/ENCFF715FGT.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF413AEC bigWig bigWig read-depth normalized signal dm6 ENCSR615VYC Control ChIP-seq /fly-donors/ENCDO860JKJ/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41394/'], '@type': ['Target', 'Item'], 'name': 'CG6808-dmelanogaster', 'label': 'CG6808', '@id': '/targets/CG6808-dmelanogaster/', 'title': 'CG6808 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '089f872f-2394-49e9-a423-83c0e5dc5373', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF048IPD/ 17526494 Kevin White, UChicago 270766c085d6f60aa7b776d2884259cc https://www.encodeproject.org/files/ENCFF413AEC/@@download/ENCFF413AEC.bigWig released s3://encode-public/2017/09/14/50598b5e-2162-4390-bbab-3fe67d8ffcf1/ENCFF413AEC.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF548DZZ fastq fastq reads ENCSR722JKV Control ChIP-seq /fly-donors/ENCDO548OYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42191/'], '@type': ['Target', 'Item'], 'name': 'CG18599-dmelanogaster', 'label': 'CG18599', '@id': '/targets/CG18599-dmelanogaster/', 'title': 'CG18599 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '519fd9aa-a719-4cbb-aeca-84e2c34cf004', 'status': 'released'} DNA 2018-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 647996689 Kevin White, UChicago 3b36eb25ba40bf13d995e2999b827821 https://www.encodeproject.org/files/ENCFF548DZZ/@@download/ENCFF548DZZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/5a215e86-c429-4155-bdc7-23408910f79c/ENCFF548DZZ.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF648RXG bam bam alignments dm3 ENCSR722JKV Control ChIP-seq /fly-donors/ENCDO548OYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42191/'], '@type': ['Target', 'Item'], 'name': 'CG18599-dmelanogaster', 'label': 'CG18599', '@id': '/targets/CG18599-dmelanogaster/', 'title': 'CG18599 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '519fd9aa-a719-4cbb-aeca-84e2c34cf004', 'status': 'released'} DNA 2018-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF548DZZ/ 863926898 Kevin White, UChicago 0c9acde473e7be519d1a3c3db05c467e https://www.encodeproject.org/files/ENCFF648RXG/@@download/ENCFF648RXG.bam released s3://encode-public/2017/09/12/097b8a59-3a30-4cba-a1f3-0343505c9320/ENCFF648RXG.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF420CNB bam bam alignments dm6 ENCSR722JKV Control ChIP-seq /fly-donors/ENCDO548OYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42191/'], '@type': ['Target', 'Item'], 'name': 'CG18599-dmelanogaster', 'label': 'CG18599', '@id': '/targets/CG18599-dmelanogaster/', 'title': 'CG18599 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '519fd9aa-a719-4cbb-aeca-84e2c34cf004', 'status': 'released'} DNA 2018-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF548DZZ/ 851456379 Kevin White, UChicago 4bf7198bc152058796fc804a5c162d0e https://www.encodeproject.org/files/ENCFF420CNB/@@download/ENCFF420CNB.bam released s3://encode-public/2017/09/13/58d7e4b1-f32b-441a-ae5a-95d1e064a0d7/ENCFF420CNB.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF168MOP bigWig bigWig signal of unique reads dm3 ENCSR722JKV Control ChIP-seq /fly-donors/ENCDO548OYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42191/'], '@type': ['Target', 'Item'], 'name': 'CG18599-dmelanogaster', 'label': 'CG18599', '@id': '/targets/CG18599-dmelanogaster/', 'title': 'CG18599 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '519fd9aa-a719-4cbb-aeca-84e2c34cf004', 'status': 'released'} DNA 2018-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF648RXG/ 15310039 Kevin White, UChicago 819f2d54581aa2e46e376d8506743a4b https://www.encodeproject.org/files/ENCFF168MOP/@@download/ENCFF168MOP.bigWig released s3://encode-public/2017/09/14/31352f48-2cd0-4056-90f8-0732e0f54515/ENCFF168MOP.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF181HQR bigWig bigWig read-depth normalized signal dm3 ENCSR722JKV Control ChIP-seq /fly-donors/ENCDO548OYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42191/'], '@type': ['Target', 'Item'], 'name': 'CG18599-dmelanogaster', 'label': 'CG18599', '@id': '/targets/CG18599-dmelanogaster/', 'title': 'CG18599 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '519fd9aa-a719-4cbb-aeca-84e2c34cf004', 'status': 'released'} DNA 2018-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF648RXG/ 15312053 Kevin White, UChicago 8d7666296e04078a9355ea5368753a66 https://www.encodeproject.org/files/ENCFF181HQR/@@download/ENCFF181HQR.bigWig released s3://encode-public/2017/09/14/29a682bd-964b-4b0e-871d-1281f80ce0ff/ENCFF181HQR.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF806ZLT bigWig bigWig read-depth normalized signal dm6 ENCSR722JKV Control ChIP-seq /fly-donors/ENCDO548OYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42191/'], '@type': ['Target', 'Item'], 'name': 'CG18599-dmelanogaster', 'label': 'CG18599', '@id': '/targets/CG18599-dmelanogaster/', 'title': 'CG18599 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '519fd9aa-a719-4cbb-aeca-84e2c34cf004', 'status': 'released'} DNA 2018-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF420CNB/ 17507594 Kevin White, UChicago 72d632ae7e85e80a394f9d39f77b9ad9 https://www.encodeproject.org/files/ENCFF806ZLT/@@download/ENCFF806ZLT.bigWig released s3://encode-public/2017/09/14/c3767d50-f998-40c1-8889-7e429abd9287/ENCFF806ZLT.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF832FDS bigWig bigWig signal of unique reads dm6 ENCSR722JKV Control ChIP-seq /fly-donors/ENCDO548OYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/42191/'], '@type': ['Target', 'Item'], 'name': 'CG18599-dmelanogaster', 'label': 'CG18599', '@id': '/targets/CG18599-dmelanogaster/', 'title': 'CG18599 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '519fd9aa-a719-4cbb-aeca-84e2c34cf004', 'status': 'released'} DNA 2018-01-11 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF420CNB/ 17504038 Kevin White, UChicago e5c347737e29e3eb5e08232a82439f2a https://www.encodeproject.org/files/ENCFF832FDS/@@download/ENCFF832FDS.bigWig released s3://encode-public/2017/09/14/72f95d93-cd35-4a7f-b700-0488847c5c1a/ENCFF832FDS.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF226MUF fastq fastq reads ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 223693606 Michael Snyder, Stanford a4c5b75ef21d3d6d40e19a4e14cc8357 https://www.encodeproject.org/files/ENCFF226MUF/@@download/ENCFF226MUF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/3cc12a99-4bf6-4cb7-9991-9d7aba06cbee/ENCFF226MUF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF302TQK fastq fastq reads ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 215915135 Michael Snyder, Stanford 3c8d8838d0e30b46ee4d30398d720016 https://www.encodeproject.org/files/ENCFF302TQK/@@download/ENCFF302TQK.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/a38a081b-8234-4aa0-90ca-24fda9878b14/ENCFF302TQK.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF623FEP bam bam alignments ce10 ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF302TQK/, /files/ENCFF226MUF/, /files/ENCFF987UMF/ 550586086 Kevin White, UChicago 614e099e05005b1c3978bc633e451794 https://www.encodeproject.org/files/ENCFF623FEP/@@download/ENCFF623FEP.bam released s3://encode-public/2017/04/27/2e0f536e-a956-4621-813b-087342fed1cd/ENCFF623FEP.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF041KON bam bam alignments ce11 ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF302TQK/, /files/ENCFF226MUF/, /files/ENCFF586MOL/ 551100302 Kevin White, UChicago 7b5cd5cd95b338c0861de92ee12a6eb2 https://www.encodeproject.org/files/ENCFF041KON/@@download/ENCFF041KON.bam released s3://encode-public/2017/04/27/a98bcd9b-a63f-4ade-8876-66ef071ae42d/ENCFF041KON.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF404UZC bigWig bigWig read-depth normalized signal ce10 ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF623FEP/ 10035214 Kevin White, UChicago c0ed968b093ebb1995301aaf8053248a https://www.encodeproject.org/files/ENCFF404UZC/@@download/ENCFF404UZC.bigWig released s3://encode-public/2017/04/29/6a86147e-0f15-40f6-a959-2ae87461a1e9/ENCFF404UZC.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF973JJJ bigWig bigWig signal of unique reads ce10 ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF623FEP/ 10007129 Kevin White, UChicago ba8badeeeae14b1bd5995562c5de65a1 https://www.encodeproject.org/files/ENCFF973JJJ/@@download/ENCFF973JJJ.bigWig released s3://encode-public/2017/04/29/97cc700c-80ac-4c75-9e80-3bc687448ccd/ENCFF973JJJ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF296ERU bigWig bigWig signal of unique reads ce11 ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF041KON/ 10004497 Kevin White, UChicago b8b0b53807a41c8840dcdfac6acef671 https://www.encodeproject.org/files/ENCFF296ERU/@@download/ENCFF296ERU.bigWig released s3://encode-public/2017/04/29/b9faf6a0-4c33-46b3-856a-4c67bcab7ad5/ENCFF296ERU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF956WWR bigWig bigWig read-depth normalized signal ce11 ENCSR540YYL Control ChIP-seq /worm-donors/ENCDO997UOZ/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/173850/'], '@type': ['Target', 'Item'], 'name': 'ZK546.5-celegans', 'label': 'ZK546.5', '@id': '/targets/ZK546.5-celegans/', 'title': 'ZK546.5 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '526222b5-5028-467f-92d9-46b89f8f756d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF041KON/ 10031785 Kevin White, UChicago 31bd5a43baf33cdb4cf72110c4e1d91b https://www.encodeproject.org/files/ENCFF956WWR/@@download/ENCFF956WWR.bigWig released s3://encode-public/2017/04/29/55036742-765e-47a5-9887-ab040e287eae/ENCFF956WWR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF110IMB fastq fastq reads ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 58824379 Michael Snyder, Stanford 1d391b9c7c53e843c6bfd6f138124057 https://www.encodeproject.org/files/ENCFF110IMB/@@download/ENCFF110IMB.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/8b4a06c4-3c09-4e70-bce7-157803408967/ENCFF110IMB.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF545VAC fastq fastq reads ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 51750136 Michael Snyder, Stanford 3728c0d51c72f0986a1deebbbe5a1c65 https://www.encodeproject.org/files/ENCFF545VAC/@@download/ENCFF545VAC.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/d3b00ac7-c2c4-433b-a440-33cc9d7b4075/ENCFF545VAC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF651IEG fastq fastq reads ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 102975542 Michael Snyder, Stanford 4822addb0649fb16ff511f89622cc0dc https://www.encodeproject.org/files/ENCFF651IEG/@@download/ENCFF651IEG.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/d3936431-814c-41a9-823e-a00d0a3088a8/ENCFF651IEG.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF578JQF fastq fastq reads ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 100266168 Michael Snyder, Stanford 2045c08a9c5b5a523a1a1a39d558da4b https://www.encodeproject.org/files/ENCFF578JQF/@@download/ENCFF578JQF.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/25/8f75492d-c4ee-4131-81d7-f09cfef49b4d/ENCFF578JQF.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF463SSI bam bam alignments ce10 ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF110IMB/, /files/ENCFF545VAC/, /files/ENCFF651IEG/, /files/ENCFF987UMF/ 319616995 Kevin White, UChicago 3fd52a7d6cd0707dcb087ff6af7ae908 https://www.encodeproject.org/files/ENCFF463SSI/@@download/ENCFF463SSI.bam released s3://encode-public/2017/04/27/23a4872f-3aac-4a58-8e3a-bc9e426c0460/ENCFF463SSI.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF011GTK bam bam alignments ce11 ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF110IMB/, /files/ENCFF545VAC/, /files/ENCFF651IEG/, /files/ENCFF586MOL/ 319875568 Kevin White, UChicago cf59782bbadeb1e85213a38a68bc869b https://www.encodeproject.org/files/ENCFF011GTK/@@download/ENCFF011GTK.bam released s3://encode-public/2017/04/27/a3842c1f-db10-4e6c-be5b-627625a285d5/ENCFF011GTK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF889SZP bigWig bigWig read-depth normalized signal ce10 ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF463SSI/ 9974910 Kevin White, UChicago 66cf3f2b9a19787ee63b1cf2bd2d52b3 https://www.encodeproject.org/files/ENCFF889SZP/@@download/ENCFF889SZP.bigWig released s3://encode-public/2017/04/29/bda82689-c9a6-45c0-b45f-f76da0c4676b/ENCFF889SZP.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF999VHM bigWig bigWig signal of unique reads ce10 ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF463SSI/ 10036224 Kevin White, UChicago 5d7ae4e1069feb8cb9eb4fbe09d9df0e https://www.encodeproject.org/files/ENCFF999VHM/@@download/ENCFF999VHM.bigWig released s3://encode-public/2017/04/29/470a4ac9-a8a5-4624-a12f-44465c774e78/ENCFF999VHM.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF036RCR bigWig bigWig read-depth normalized signal ce11 ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF011GTK/ 9975210 Kevin White, UChicago d1eff7d679941ad11b37db8ffd0bc0db https://www.encodeproject.org/files/ENCFF036RCR/@@download/ENCFF036RCR.bigWig released s3://encode-public/2017/04/29/feb010a9-3750-4708-87bf-b148f502b6d2/ENCFF036RCR.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF387CVM bigWig bigWig signal of unique reads ce11 ENCSR589NOT Control ChIP-seq /worm-donors/ENCDO168EPG/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/177738/'], '@type': ['Target', 'Item'], 'name': 'aly-2-celegans', 'label': 'aly-2', '@id': '/targets/aly-2-celegans/', 'title': 'aly-2 (Caenorhabditis elegans)', 'investigated_as': ['other context'], 'uuid': '2eabe28c-fa3e-4970-ba9b-d271aa304490', 'status': 'released'} DNA 2018-02-14 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF011GTK/ 10035863 Kevin White, UChicago af50f074cb59340deee67d27cf5d80e7 https://www.encodeproject.org/files/ENCFF387CVM/@@download/ENCFF387CVM.bigWig released s3://encode-public/2017/04/29/d2969f7c-4e3f-4f18-99aa-a1953b9b3907/ENCFF387CVM.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF311NXF fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 434476516 Bradley Bernstein, Broad d33403b9476032ac4093345e4709ea79 SRA:SRR14103888 https://www.encodeproject.org/files/ENCFF311NXF/@@download/ENCFF311NXF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/bc67443c-3d05-407c-96c9-bc8374d8cf91/ENCFF311NXF.fastq.gz ENCFF852PIQ fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 502825167 Bradley Bernstein, Broad 4ec6fde1f44049f37f683178787e9d2b SRA:SRR14103904 https://www.encodeproject.org/files/ENCFF852PIQ/@@download/ENCFF852PIQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/40921da2-3144-4792-977d-52223bd82f4d/ENCFF852PIQ.fastq.gz ENCFF561TEI fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 475333998 Bradley Bernstein, Broad e0947bf65d0e95af548b02976bd37b8f SRA:SRR14103889 https://www.encodeproject.org/files/ENCFF561TEI/@@download/ENCFF561TEI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a2458140-0688-47f3-ac43-1e994e1178da/ENCFF561TEI.fastq.gz ENCFF060DIH fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 505415681 Bradley Bernstein, Broad 78a26a3bbdf3fb1fb07111e649c65528 SRA:SRR14103905 https://www.encodeproject.org/files/ENCFF060DIH/@@download/ENCFF060DIH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5b264526-7926-49ad-972d-b12258a3c7da/ENCFF060DIH.fastq.gz ENCFF694SJJ fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 472081204 Bradley Bernstein, Broad 5d7dde2fe2d42e21df4b791de7c23709 SRA:SRR14103890 https://www.encodeproject.org/files/ENCFF694SJJ/@@download/ENCFF694SJJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3ed62af7-c64a-40bd-92d7-5dcd1dc8aeb1/ENCFF694SJJ.fastq.gz ENCFF212HLG fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 512968104 Bradley Bernstein, Broad 25a519ec7f652477d4260101a32a6a59 SRA:SRR14103906 https://www.encodeproject.org/files/ENCFF212HLG/@@download/ENCFF212HLG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/bfcf0877-9684-4898-accf-027279449183/ENCFF212HLG.fastq.gz ENCFF875YHM fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 47345834 Bradley Bernstein, Broad 27d051d5bfd484aa617f4182ae10ac97 SRA:SRR14103891 https://www.encodeproject.org/files/ENCFF875YHM/@@download/ENCFF875YHM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8bbd4f94-330b-4be2-9b9d-347242fc57a4/ENCFF875YHM.fastq.gz ENCFF522PNA fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 317441128 Bradley Bernstein, Broad d07e6a3c74dd2fff0a83084c645782b7 SRA:SRR14103896 https://www.encodeproject.org/files/ENCFF522PNA/@@download/ENCFF522PNA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/25ae8d1d-3ccc-4152-9db2-a68c289c7cea/ENCFF522PNA.fastq.gz ENCFF275NSJ fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 314768270 Bradley Bernstein, Broad 6463d8db6b510b79a11578b764ae9c5b SRA:SRR14103897 https://www.encodeproject.org/files/ENCFF275NSJ/@@download/ENCFF275NSJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/1c7e0dd6-237c-44c5-a163-c5f8e44b354c/ENCFF275NSJ.fastq.gz ENCFF935EAU fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 510168416 Bradley Bernstein, Broad 2fa0b5b3c2b086636ba68f9bdc32f5ea SRA:SRR14103907 https://www.encodeproject.org/files/ENCFF935EAU/@@download/ENCFF935EAU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/344ad3de-ea43-4029-8661-4b80ba171f58/ENCFF935EAU.fastq.gz ENCFF706BWN fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 46935330 Bradley Bernstein, Broad 2acefc0b2d7c309aa87ccf6080b14645 SRA:SRR14103892 https://www.encodeproject.org/files/ENCFF706BWN/@@download/ENCFF706BWN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/507bb660-bf01-45ff-a907-8d87800ef302/ENCFF706BWN.fastq.gz ENCFF397JAN fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 453890519 Bradley Bernstein, Broad 951c67faf7930c53745ca420b8060b67 SRA:SRR14103893 https://www.encodeproject.org/files/ENCFF397JAN/@@download/ENCFF397JAN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9497279c-ed03-4d6b-9f44-886ebf8c0951/ENCFF397JAN.fastq.gz ENCFF274DWP fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 415507572 Bradley Bernstein, Broad 9f25ab269124fc042104431e76a5f554 SRA:SRR14103900 https://www.encodeproject.org/files/ENCFF274DWP/@@download/ENCFF274DWP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a2978d93-df6b-417e-87cc-447d74cb88d9/ENCFF274DWP.fastq.gz ENCFF613URB fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 321233834 Bradley Bernstein, Broad a6349b215eee4324869f3bacb6b099b5 SRA:SRR14103898 https://www.encodeproject.org/files/ENCFF613URB/@@download/ENCFF613URB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/00d0d24b-19bd-43ad-805b-5845330f03f4/ENCFF613URB.fastq.gz ENCFF490AZM fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 48383074 Bradley Bernstein, Broad c75918527cb1f60bfc98bf31d7957efe SRA:SRR14103894 https://www.encodeproject.org/files/ENCFF490AZM/@@download/ENCFF490AZM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a8984305-6a9c-49bd-8c47-1d9e08bc1997/ENCFF490AZM.fastq.gz ENCFF942RJM fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 47124078 Bradley Bernstein, Broad 20c0abc27737744d2dbca76a2179fe5d SRA:SRR14103895 https://www.encodeproject.org/files/ENCFF942RJM/@@download/ENCFF942RJM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/bbafa00c-c343-4343-981d-b0033b19e314/ENCFF942RJM.fastq.gz ENCFF997YYY fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 412108147 Bradley Bernstein, Broad fe0dc0b0590a20dc248c245b39195234 SRA:SRR14103901 https://www.encodeproject.org/files/ENCFF997YYY/@@download/ENCFF997YYY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4deb47fc-3282-44a5-99d7-c37ccc677718/ENCFF997YYY.fastq.gz ENCFF873VBQ fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 409393315 Bradley Bernstein, Broad 52f2a32be6de0a4b966ea2ed8136458b SRA:SRR14103902 https://www.encodeproject.org/files/ENCFF873VBQ/@@download/ENCFF873VBQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/d21c6972-c413-49f5-b929-582596b6409a/ENCFF873VBQ.fastq.gz ENCFF408TYC fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 421619401 Bradley Bernstein, Broad 11b69051557045c2f03f328c4778fb80 SRA:SRR14103903 https://www.encodeproject.org/files/ENCFF408TYC/@@download/ENCFF408TYC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/65bec4f9-68b2-42da-a81c-91b145bcda17/ENCFF408TYC.fastq.gz ENCFF845GLM fastq fastq reads ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 313444122 Bradley Bernstein, Broad 581c261f26456de0228aa0f21fb9ff8f SRA:SRR14103899 https://www.encodeproject.org/files/ENCFF845GLM/@@download/ENCFF845GLM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3697f5af-da2f-4944-9bb8-a46358af7ba9/ENCFF845GLM.fastq.gz ENCFF347SYR bam bam unfiltered alignments GRCh38 ENCSR795YGE 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/files/ENCFF212HLG/, /files/ENCFF408TYC/, /files/ENCFF873VBQ/, /files/ENCFF935EAU/, /files/ENCFF274DWP/, /files/ENCFF852PIQ/ 3081133623 ENCODE Processing Pipeline e1c75737b20f13c220e31bdcd58807e3 https://www.encodeproject.org/files/ENCFF969GPH/@@download/ENCFF969GPH.bam released s3://encode-public/2020/06/14/49f30d91-91d1-48c1-8129-58e0cd5aa424/ENCFF969GPH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF430OFI bam bam unfiltered alignments GRCh38 ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 75 /files/ENCFF110MCL/, /files/ENCFF060DIH/, /files/ENCFF997YYY/, /files/ENCFF212HLG/, /files/ENCFF408TYC/, /files/ENCFF873VBQ/, /files/ENCFF935EAU/, /files/ENCFF274DWP/, /files/ENCFF852PIQ/ 3631549474 ENCODE Processing Pipeline 406e041acef368f2f5420a86bbca36d9 https://www.encodeproject.org/files/ENCFF430OFI/@@download/ENCFF430OFI.bam released s3://encode-public/2020/06/14/0925f9a5-6c49-4041-a7ef-e0201cb28701/ENCFF430OFI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF781UJC bam bam alignments GRCh38 ENCSR795YGE Control ChIP-seq /human-donors/ENCDO222AAA/ NTR:0000512 nephron progenitor cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF110MCL/, /files/ENCFF311NXF/, /files/ENCFF561TEI/, /files/ENCFF397JAN/, /files/ENCFF613URB/, /files/ENCFF275NSJ/, /files/ENCFF490AZM/, /files/ENCFF942RJM/, /files/ENCFF845GLM/, /files/ENCFF522PNA/, /files/ENCFF694SJJ/, /files/ENCFF706BWN/, /files/ENCFF875YHM/ 2791264648 ENCODE Processing Pipeline 09ead05989d583c3e9666822a13c6609 https://www.encodeproject.org/files/ENCFF781UJC/@@download/ENCFF781UJC.bam released s3://encode-public/2020/06/14/82e05467-23ee-428e-b176-43d4ce919210/ENCFF781UJC.bam ENCODE4 v1.4.0 GRCh38 released ENCFF998FJE fastq fastq reads ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 167815995 Michael Snyder, Stanford d91c07ce816214d7cfba631946c865ef https://www.encodeproject.org/files/ENCFF998FJE/@@download/ENCFF998FJE.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/26/d5f69eb1-3b66-4067-aa3b-8e375c4c85d0/ENCFF998FJE.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF154SRA fastq fastq reads ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 30 single-ended 123395451 Michael Snyder, Stanford 7ed320c4e764da1cb53a20ac2156efde https://www.encodeproject.org/files/ENCFF154SRA/@@download/ENCFF154SRA.fastq.gz Illumina Genome Analyzer released s3://encode-public/2017/04/26/b1274c35-92ff-40df-80ff-bbd60d0edabd/ENCFF154SRA.fastq.gz missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF257GVC bam bam alignments ce10 ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 30 /files/ENCFF154SRA/, /files/ENCFF998FJE/, /files/ENCFF987UMF/ 170412314 Kevin White, UChicago 6aa9b9eff147f296780e7a2b9f4e1395 https://www.encodeproject.org/files/ENCFF257GVC/@@download/ENCFF257GVC.bam released s3://encode-public/2017/04/27/ab16821e-225b-4d1a-98ae-242ef4e6836e/ENCFF257GVC.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF263NIK bam bam alignments ce11 ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 30 /files/ENCFF154SRA/, /files/ENCFF998FJE/, /files/ENCFF586MOL/ 170576278 Kevin White, UChicago 5dda702ffd04bc14aa4f18094b903b99 https://www.encodeproject.org/files/ENCFF263NIK/@@download/ENCFF263NIK.bam released s3://encode-public/2017/04/27/dbd6456d-a588-4fb9-add4-1e6b4dfb48c2/ENCFF263NIK.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF384RLQ bigWig bigWig read-depth normalized signal ce10 ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF257GVC/ 10010407 Kevin White, UChicago b671320db5363672b2d484cf89791d4e https://www.encodeproject.org/files/ENCFF384RLQ/@@download/ENCFF384RLQ.bigWig released s3://encode-public/2017/04/29/c4fc9b5d-282e-4690-aca4-7b3812cbf863/ENCFF384RLQ.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF129WJW bigWig bigWig signal of unique reads ce10 ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF257GVC/ 10058488 Kevin White, UChicago 41fe9854473ace63b66226688302176a https://www.encodeproject.org/files/ENCFF129WJW/@@download/ENCFF129WJW.bigWig released s3://encode-public/2017/04/29/9b35d726-bfba-48c4-b909-701784fe266c/ENCFF129WJW.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF703UGS bigWig bigWig signal of unique reads ce11 ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF263NIK/ 10052781 Kevin White, UChicago 7bc654ea19e60b1b73a848dd46e17a59 https://www.encodeproject.org/files/ENCFF703UGS/@@download/ENCFF703UGS.bigWig released s3://encode-public/2017/04/29/29038370-4bf4-498f-97a6-e76aba09eebf/ENCFF703UGS.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF200WGU bigWig bigWig read-depth normalized signal ce11 ENCSR927LZU Control ChIP-seq /worm-donors/ENCDO887AXX/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/181503/'], '@type': ['Target', 'Item'], 'name': 'elt-3-celegans', 'label': 'elt-3', '@id': '/targets/elt-3-celegans/', 'title': 'elt-3 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'e9b448a6-79bf-4840-9999-69d61cac798d', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF263NIK/ 10008678 Kevin White, UChicago 7c4b83fb2fd929f6af0187d26eec26ee https://www.encodeproject.org/files/ENCFF200WGU/@@download/ENCFF200WGU.bigWig released s3://encode-public/2017/04/29/7cb3bfae-fdad-4006-8ad6-8ea3760cb431/ENCFF200WGU.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization, inconsistent platforms ENCFF299YPB fastq fastq reads ENCSR592PUP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF009UZV/ 2952253889 Michael Snyder, Stanford b2b09a5447c9f550b6ec32da2af3363b SRA:SRR14107503 https://www.encodeproject.org/files/ENCFF299YPB/@@download/ENCFF299YPB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/14/b3de6e39-d257-40b7-97ee-e6ff3c97f55b/ENCFF299YPB.fastq.gz mild to moderate bottlenecking ENCFF009UZV fastq fastq reads ENCSR592PUP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF299YPB/ 2566519174 Michael Snyder, Stanford 53799bad66517a4f8b63530f897253c7 SRA:SRR14107503 https://www.encodeproject.org/files/ENCFF009UZV/@@download/ENCFF009UZV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/14/f06d78d4-a45c-4500-9155-17b1c4dc2acb/ENCFF009UZV.fastq.gz mild to moderate bottlenecking ENCFF223NZX bam bam alignments GRCh38 ENCSR592PUP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF009UZV/, /files/ENCFF299YPB/ 3767887441 ENCODE Processing Pipeline 06d0f70472508246b6f2b3ea16187b05 https://www.encodeproject.org/files/ENCFF223NZX/@@download/ENCFF223NZX.bam released s3://encode-public/2020/04/21/51a0e9d0-d172-44a0-8978-1460febd4da8/ENCFF223NZX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF494ALA bam bam unfiltered alignments GRCh38 ENCSR592PUP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9586/'], '@type': ['Target', 'Item'], 'name': 'CREB5-human', 'label': 'CREB5', '@id': '/targets/CREB5-human/', 'title': 'CREB5 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'c1830518-7a2b-41c3-8f79-205359bc4093', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF009UZV/, /files/ENCFF299YPB/ 5376978192 ENCODE Processing Pipeline d1db3a6f74fd9b4f189ffe47138b1c15 https://www.encodeproject.org/files/ENCFF494ALA/@@download/ENCFF494ALA.bam released s3://encode-public/2020/04/21/5c69d2f6-efdf-49cd-9c28-62f654f7d192/ENCFF494ALA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF087UFW fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 426458825 Bradley Bernstein, Broad 828d04856179ae8f163d888be0fb8de4 SRA:SRR14105129 https://www.encodeproject.org/files/ENCFF087UFW/@@download/ENCFF087UFW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/ddcabd6e-db0f-4f51-a05f-4993656d25d4/ENCFF087UFW.fastq.gz ENCFF863GVU fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 416756999 Bradley Bernstein, Broad 27d43a8be7a2a2ae28bf6a1dabf51041 SRA:SRR14105130 https://www.encodeproject.org/files/ENCFF863GVU/@@download/ENCFF863GVU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e07a6ba5-d60e-4dd6-9fbc-1366e2869c21/ENCFF863GVU.fastq.gz ENCFF245XNF fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 422476654 Bradley Bernstein, Broad 5f0ef7f00052a03ca0ac90eae0a256c3 SRA:SRR14105131 https://www.encodeproject.org/files/ENCFF245XNF/@@download/ENCFF245XNF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/50ed2690-7709-47f2-9b28-97d884102834/ENCFF245XNF.fastq.gz ENCFF653HQU fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 419468015 Bradley Bernstein, Broad 2a64b52f1f3a5af67b2b13d783fd66dc SRA:SRR14105132 https://www.encodeproject.org/files/ENCFF653HQU/@@download/ENCFF653HQU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3eb4dcd3-2400-4b04-aa5f-9b5a476e60dc/ENCFF653HQU.fastq.gz ENCFF812GOG fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 471988068 Bradley Bernstein, Broad b6407a97cbbebdaaa7607608da43007f SRA:SRR14105125 https://www.encodeproject.org/files/ENCFF812GOG/@@download/ENCFF812GOG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/66cfc654-14aa-43c8-9588-1a2aae03551e/ENCFF812GOG.fastq.gz ENCFF973VPD fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 473556627 Bradley Bernstein, Broad a5f48731dd8a0e5aebbd62e0b5713d98 SRA:SRR14105126 https://www.encodeproject.org/files/ENCFF973VPD/@@download/ENCFF973VPD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/69e6aa2b-0314-4259-988c-d3c0324ba82d/ENCFF973VPD.fastq.gz ENCFF738BEU fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 467916843 Bradley Bernstein, Broad 293ebcf0575bb7efd2d601ab312b4831 SRA:SRR14105127 https://www.encodeproject.org/files/ENCFF738BEU/@@download/ENCFF738BEU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/98f7c008-da01-461d-9047-4f1e7a595d3b/ENCFF738BEU.fastq.gz ENCFF572ZOM fastq fastq reads ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 459403679 Bradley Bernstein, Broad 77049237463757efc10562a6f28e1d5d SRA:SRR14105128 https://www.encodeproject.org/files/ENCFF572ZOM/@@download/ENCFF572ZOM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/79584c8a-687a-4c93-9f24-31e31ea75276/ENCFF572ZOM.fastq.gz ENCFF831EFY bam bam unfiltered alignments GRCh38 ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF738BEU/, /files/ENCFF973VPD/, /files/ENCFF245XNF/, /files/ENCFF812GOG/, /files/ENCFF110MCL/, /files/ENCFF863GVU/, /files/ENCFF653HQU/, /files/ENCFF087UFW/, /files/ENCFF572ZOM/ 3502878684 ENCODE Processing Pipeline f80e661ffcbd92c8b8686b0b8f4005c6 https://www.encodeproject.org/files/ENCFF831EFY/@@download/ENCFF831EFY.bam released s3://encode-public/2020/06/14/2ee7fa62-b358-4807-bbff-fc369dbf9327/ENCFF831EFY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF582TZY bam bam alignments GRCh38 ENCSR866FCH Control ChIP-seq /human-donors/ENCDO336AAA/ EFO:0007950 GM23338 cell line Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF738BEU/, /files/ENCFF973VPD/, /files/ENCFF245XNF/, /files/ENCFF812GOG/, /files/ENCFF110MCL/, /files/ENCFF863GVU/, /files/ENCFF653HQU/, /files/ENCFF087UFW/, /files/ENCFF572ZOM/ 2930267084 ENCODE Processing Pipeline 3bc5418fed0725f86365035811e95338 https://www.encodeproject.org/files/ENCFF582TZY/@@download/ENCFF582TZY.bam released s3://encode-public/2020/06/14/61d42d00-f4e7-4e17-91ad-6057daaaf132/ENCFF582TZY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF686YML fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 501514487 Bradley Bernstein, Broad e8035c0ca7051c25e9764562bf8e5c63 SRA:SRR14103298 https://www.encodeproject.org/files/ENCFF686YML/@@download/ENCFF686YML.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3f7b7e1d-ad22-4947-8571-b091d2df880e/ENCFF686YML.fastq.gz ENCFF629SFY fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 485003934 Bradley Bernstein, Broad 1cf51115a405b348fc829c7b42dfe2e1 SRA:SRR14103294 https://www.encodeproject.org/files/ENCFF629SFY/@@download/ENCFF629SFY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e8547c23-1337-406c-baa0-88f4791f6f67/ENCFF629SFY.fastq.gz ENCFF488OKK fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 485349456 Bradley Bernstein, Broad 2d2640dd9b43a918360179350bfc6353 SRA:SRR14103299 https://www.encodeproject.org/files/ENCFF488OKK/@@download/ENCFF488OKK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2fb75ef1-1b6b-41ae-8c44-a06dc6c174b4/ENCFF488OKK.fastq.gz ENCFF783FMB fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 489534280 Bradley Bernstein, Broad f20fb9fc6ca783a617df694db62d5e16 SRA:SRR14103295 https://www.encodeproject.org/files/ENCFF783FMB/@@download/ENCFF783FMB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9733e9b4-67d2-4426-97c8-f021e3df0a2d/ENCFF783FMB.fastq.gz ENCFF921TGT fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 490151928 Bradley Bernstein, Broad 11516f9396d29c82d53479393a26c67e SRA:SRR14103300 https://www.encodeproject.org/files/ENCFF921TGT/@@download/ENCFF921TGT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6b6703c8-dd50-4239-af51-fdeadade73d6/ENCFF921TGT.fastq.gz ENCFF481BVW fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 493718681 Bradley Bernstein, Broad 0edef7075d0127d80cfdd226558a2156 SRA:SRR14103301 https://www.encodeproject.org/files/ENCFF481BVW/@@download/ENCFF481BVW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/c93f8eca-4914-4f18-a366-243c61002788/ENCFF481BVW.fastq.gz ENCFF010MGH fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 479941427 Bradley Bernstein, Broad 3e88dba72940f5e75ee18c3050261947 SRA:SRR14103296 https://www.encodeproject.org/files/ENCFF010MGH/@@download/ENCFF010MGH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/be32c616-8cb2-40a0-b8db-e22ba8d85c6c/ENCFF010MGH.fastq.gz ENCFF540HCN fastq fastq reads ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 493995808 Bradley Bernstein, Broad 4c96f9858bf0ddd6cf76052703b4494e SRA:SRR14103297 https://www.encodeproject.org/files/ENCFF540HCN/@@download/ENCFF540HCN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e69990a1-b148-4c14-b9ba-5e4f309054fb/ENCFF540HCN.fastq.gz ENCFF137RTO bam bam alignments GRCh38 ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF010MGH/, /files/ENCFF540HCN/, /files/ENCFF629SFY/, /files/ENCFF488OKK/, /files/ENCFF783FMB/, /files/ENCFF921TGT/, /files/ENCFF686YML/, /files/ENCFF481BVW/, /files/ENCFF110MCL/ 3160042018 ENCODE Processing Pipeline 0bd0ea4c56793cb22aa4af250b8b5529 https://www.encodeproject.org/files/ENCFF137RTO/@@download/ENCFF137RTO.bam released s3://encode-public/2020/06/14/008d335e-3889-4199-87e6-5d82e3ea02af/ENCFF137RTO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF792MWO bam bam unfiltered alignments GRCh38 ENCSR730VRY Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000127 astrocyte in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF010MGH/, /files/ENCFF540HCN/, /files/ENCFF629SFY/, /files/ENCFF488OKK/, /files/ENCFF783FMB/, /files/ENCFF921TGT/, /files/ENCFF686YML/, /files/ENCFF481BVW/, /files/ENCFF110MCL/ 3801627475 ENCODE Processing Pipeline 46ed660e7b21ecdd1b4a74dbdc5b7a21 https://www.encodeproject.org/files/ENCFF792MWO/@@download/ENCFF792MWO.bam released s3://encode-public/2020/06/14/dc563d78-32ba-4361-b132-303c17f6f2d3/ENCFF792MWO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF017DGU fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 270813983 Bradley Bernstein, Broad 9c867908e86a7f8bb24ed0af3fd2804a SRA:SRR14107907 https://www.encodeproject.org/files/ENCFF017DGU/@@download/ENCFF017DGU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e39e2f88-9e42-4a76-9e17-3b205830a446/ENCFF017DGU.fastq.gz ENCFF996XWL fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 363335231 Bradley Bernstein, Broad 6966b8bc3bbd8cffb6de79837cfe2815 SRA:SRR14107903 https://www.encodeproject.org/files/ENCFF996XWL/@@download/ENCFF996XWL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2d9b1cfd-0d08-4799-917a-fb236d972594/ENCFF996XWL.fastq.gz ENCFF731IGQ fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 356137741 Bradley Bernstein, Broad ab49c89c6ab7031d0e6124fb65adb402 SRA:SRR14107904 https://www.encodeproject.org/files/ENCFF731IGQ/@@download/ENCFF731IGQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/baf162fd-834e-4ee9-a5fa-a80eabc286b7/ENCFF731IGQ.fastq.gz ENCFF249HFO fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 286106252 Bradley Bernstein, Broad e597477a95331d88d1763c2c5a7bcaa0 SRA:SRR14107908 https://www.encodeproject.org/files/ENCFF249HFO/@@download/ENCFF249HFO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/408e3561-5d00-4866-8ff3-6d26e8b1aaa6/ENCFF249HFO.fastq.gz ENCFF864KFW fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 361075447 Bradley Bernstein, Broad 4ecd82806da532eb52cadb2cbc7beb98 SRA:SRR14107905 https://www.encodeproject.org/files/ENCFF864KFW/@@download/ENCFF864KFW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2d7db324-4c5e-4114-ac3c-2991359436dd/ENCFF864KFW.fastq.gz ENCFF414FAJ fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 489424675 Bradley Bernstein, Broad 4b587c78a151f2d0f23d19a7d63f140a SRA:SRR14107899 https://www.encodeproject.org/files/ENCFF414FAJ/@@download/ENCFF414FAJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/73d3d53b-65c0-4585-84c5-42078b604204/ENCFF414FAJ.fastq.gz ENCFF662LWX fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 497587071 Bradley Bernstein, Broad f0ec80c5bf033a381e74d54900ee1ff2 SRA:SRR14107900 https://www.encodeproject.org/files/ENCFF662LWX/@@download/ENCFF662LWX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/324d51a4-5ed6-405f-a7e7-02a44504d2ba/ENCFF662LWX.fastq.gz ENCFF232TAH fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 498191355 Bradley Bernstein, Broad a6b2a992ae6e1d3b5ef4c5c0be6c7f6c SRA:SRR14107901 https://www.encodeproject.org/files/ENCFF232TAH/@@download/ENCFF232TAH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/97d975dd-9b17-4736-8ec2-dae36ee1a16e/ENCFF232TAH.fastq.gz ENCFF614RBO fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 283950665 Bradley Bernstein, Broad 18c70255dfcccd2c536a78df9a05a35f SRA:SRR14107909 https://www.encodeproject.org/files/ENCFF614RBO/@@download/ENCFF614RBO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/46a4334c-52aa-484d-bacd-16fd57bdfe61/ENCFF614RBO.fastq.gz ENCFF947ZVZ fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 493066041 Bradley Bernstein, Broad 0be1d01fe954730808b7f7830846ce85 SRA:SRR14107902 https://www.encodeproject.org/files/ENCFF947ZVZ/@@download/ENCFF947ZVZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/1fa4b102-87b5-4472-893b-414fe95761ef/ENCFF947ZVZ.fastq.gz ENCFF094EZH fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 287921687 Bradley Bernstein, Broad 054d323dd549e0c6983fe2e4b9db0bc8 SRA:SRR14107910 https://www.encodeproject.org/files/ENCFF094EZH/@@download/ENCFF094EZH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/17e2269c-1bdc-4e11-8b21-9123794685dd/ENCFF094EZH.fastq.gz ENCFF425NJL fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 359511706 Bradley Bernstein, Broad e95be71ae0e7c53c48c0b987fa5a5c2c SRA:SRR14107906 https://www.encodeproject.org/files/ENCFF425NJL/@@download/ENCFF425NJL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9b81f9bf-abd4-41ce-aa16-36e1557ab586/ENCFF425NJL.fastq.gz ENCFF070XMJ fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 332768658 Bradley Bernstein, Broad 85f76f55b27d834bc603102daaa96a43 SRA:SRR14107911 https://www.encodeproject.org/files/ENCFF070XMJ/@@download/ENCFF070XMJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/1b57b156-1d67-4a33-89cb-f98ea6885e53/ENCFF070XMJ.fastq.gz ENCFF759DKM fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 331292290 Bradley Bernstein, Broad cf487fe920d262e353f7a1579607e89e SRA:SRR14107912 https://www.encodeproject.org/files/ENCFF759DKM/@@download/ENCFF759DKM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9fb31f8f-21e4-4446-a522-254b6cee12f2/ENCFF759DKM.fastq.gz ENCFF648YCH fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 336029041 Bradley Bernstein, Broad 7f90ede9d605c7de66f80bad7817a181 SRA:SRR14107913 https://www.encodeproject.org/files/ENCFF648YCH/@@download/ENCFF648YCH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4b2b65a2-efce-42d5-b7ab-44e0809c03bb/ENCFF648YCH.fastq.gz ENCFF956BWW fastq fastq reads ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 341531014 Bradley Bernstein, Broad 7d1164bc3d9c104d16c15aa21a4dbd5b SRA:SRR14107914 https://www.encodeproject.org/files/ENCFF956BWW/@@download/ENCFF956BWW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6dde108f-d724-47df-a3f4-d19ba40fa714/ENCFF956BWW.fastq.gz ENCFF520KVH bam bam unfiltered alignments GRCh38 ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF425NJL/, /files/ENCFF110MCL/, /files/ENCFF864KFW/, /files/ENCFF759DKM/, /files/ENCFF996XWL/, /files/ENCFF731IGQ/, /files/ENCFF648YCH/, /files/ENCFF956BWW/, /files/ENCFF070XMJ/ 2822395555 ENCODE Processing Pipeline 3fdb51b879909c46ee01f56e9f5f8d67 https://www.encodeproject.org/files/ENCFF520KVH/@@download/ENCFF520KVH.bam released s3://encode-public/2020/06/14/744988a2-d51e-436e-93cb-450ede7b821e/ENCFF520KVH.bam ENCODE4 v1.4.0 GRCh38 released ENCFF846DJU bam bam unfiltered alignments GRCh38 ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF232TAH/, /files/ENCFF614RBO/, /files/ENCFF110MCL/, /files/ENCFF414FAJ/, /files/ENCFF947ZVZ/, /files/ENCFF094EZH/, /files/ENCFF249HFO/, /files/ENCFF017DGU/, /files/ENCFF662LWX/ 3103309101 ENCODE Processing Pipeline 54e994e0224b79d331284bf8a6f87d81 https://www.encodeproject.org/files/ENCFF846DJU/@@download/ENCFF846DJU.bam released s3://encode-public/2020/06/14/1bbcf301-c8e7-4503-b203-8897f36b5f47/ENCFF846DJU.bam ENCODE4 v1.4.0 GRCh38 released ENCFF031NFN bam bam alignments GRCh38 ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF425NJL/, /files/ENCFF110MCL/, /files/ENCFF864KFW/, /files/ENCFF759DKM/, /files/ENCFF996XWL/, /files/ENCFF731IGQ/, /files/ENCFF648YCH/, /files/ENCFF956BWW/, /files/ENCFF070XMJ/ 2362197976 ENCODE Processing Pipeline 5b297ab14fbc5aabdded405679839535 https://www.encodeproject.org/files/ENCFF031NFN/@@download/ENCFF031NFN.bam released s3://encode-public/2020/06/14/4dcdb29e-e334-4e91-9f6f-251684d7ab0d/ENCFF031NFN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF993OOP bam bam alignments GRCh38 ENCSR688WUZ Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF232TAH/, /files/ENCFF614RBO/, /files/ENCFF110MCL/, /files/ENCFF414FAJ/, /files/ENCFF947ZVZ/, /files/ENCFF094EZH/, /files/ENCFF249HFO/, /files/ENCFF017DGU/, /files/ENCFF662LWX/ 2628162741 ENCODE Processing Pipeline 92197690b66b67c197ba379db3a19ae3 https://www.encodeproject.org/files/ENCFF993OOP/@@download/ENCFF993OOP.bam released s3://encode-public/2020/06/14/c1eb0faf-c1a9-440d-8147-bcbcbc288926/ENCFF993OOP.bam ENCODE4 v1.4.0 GRCh38 released ENCFF282RQL fastq fastq reads ENCSR280HPE Control ChIP-seq /fly-donors/ENCDO557NJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38733/'], '@type': ['Target', 'Item'], 'name': 'CG10147-dmelanogaster', 'label': 'CG10147', '@id': '/targets/CG10147-dmelanogaster/', 'title': 'CG10147 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6e0293b9-093b-4b00-af74-8f3e762648ac', 'status': 'released'} dm3 3L 6462876 6485102 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 989831403 Kevin White, UChicago 6a4e326fa45890da8ffd6f8a64d48b8b https://www.encodeproject.org/files/ENCFF282RQL/@@download/ENCFF282RQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/cb6662e1-5cf8-40b9-a4f9-26b3ecad0158/ENCFF282RQL.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF313ZQR bam bam alignments dm6 ENCSR280HPE Control ChIP-seq /fly-donors/ENCDO557NJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38733/'], '@type': ['Target', 'Item'], 'name': 'CG10147-dmelanogaster', 'label': 'CG10147', '@id': '/targets/CG10147-dmelanogaster/', 'title': 'CG10147 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6e0293b9-093b-4b00-af74-8f3e762648ac', 'status': 'released'} dm3 3L 6462876 6485102 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF282RQL/, /files/ENCFF479RCH/ 1325117169 Kevin White, UChicago 0e8a38f2ff92d6db063eef9ee5ee6800 https://www.encodeproject.org/files/ENCFF313ZQR/@@download/ENCFF313ZQR.bam released s3://encode-public/2019/04/13/e38f9090-c702-4b22-b3a4-d0be21d18b90/ENCFF313ZQR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF455UWB bigWig bigWig read-depth normalized signal dm6 ENCSR280HPE Control ChIP-seq /fly-donors/ENCDO557NJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38733/'], '@type': ['Target', 'Item'], 'name': 'CG10147-dmelanogaster', 'label': 'CG10147', '@id': '/targets/CG10147-dmelanogaster/', 'title': 'CG10147 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6e0293b9-093b-4b00-af74-8f3e762648ac', 'status': 'released'} dm3 3L 6462876 6485102 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF313ZQR/ 17756619 Kevin White, UChicago 9c51771ea055e4b6262b4af9ebd80b62 https://www.encodeproject.org/files/ENCFF455UWB/@@download/ENCFF455UWB.bigWig released s3://encode-public/2019/04/16/f38d4879-0075-4a98-9b3d-07a321257556/ENCFF455UWB.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF557PQZ bigWig bigWig signal of unique reads dm6 ENCSR280HPE Control ChIP-seq /fly-donors/ENCDO557NJX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38733/'], '@type': ['Target', 'Item'], 'name': 'CG10147-dmelanogaster', 'label': 'CG10147', '@id': '/targets/CG10147-dmelanogaster/', 'title': 'CG10147 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '6e0293b9-093b-4b00-af74-8f3e762648ac', 'status': 'released'} dm3 3L 6462876 6485102 DNA 2019-05-16 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF313ZQR/ 17721284 Kevin White, UChicago a008d9223eefc9327086d2340781d5d7 https://www.encodeproject.org/files/ENCFF557PQZ/@@download/ENCFF557PQZ.bigWig released s3://encode-public/2019/04/16/724438a6-fcb0-4ca2-9317-68bbbf6f5fdf/ENCFF557PQZ.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF440BFW bigWig bigWig read-depth normalized signal dm6 ENCSR331EDA Control ChIP-seq /fly-donors/ENCDO531ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40155/'], '@type': ['Target', 'Item'], 'name': 'HLH106-dmelanogaster', 'label': 'HLH106', '@id': '/targets/HLH106-dmelanogaster/', 'title': 'HLH106 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd813012e-f5cb-4885-8924-7fe059000526', 'status': 'released'} dm3 3L 19781300 19802015 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF794WSD/ 17611037 Kevin White, UChicago 8d8d32846fd0312a74d9d1412c76dd73 https://www.encodeproject.org/files/ENCFF440BFW/@@download/ENCFF440BFW.bigWig released s3://encode-public/2019/06/18/b30e3ee0-cd13-4a00-a032-3e0f0f8d0c6c/ENCFF440BFW.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF793EOC fastq fastq reads ENCSR331EDA Control ChIP-seq /fly-donors/ENCDO531ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40155/'], '@type': ['Target', 'Item'], 'name': 'HLH106-dmelanogaster', 'label': 'HLH106', '@id': '/targets/HLH106-dmelanogaster/', 'title': 'HLH106 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd813012e-f5cb-4885-8924-7fe059000526', 'status': 'released'} dm3 3L 19781300 19802015 DNA 2019-07-02 modERN 200-800 1 1_1 50 single-ended 733982095 Kevin White, UChicago b5b04ebb51d8aab271d4b703ac6d5614 https://www.encodeproject.org/files/ENCFF793EOC/@@download/ENCFF793EOC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/06/17/2b8bbb4a-d865-4631-a3c6-b3a5e9b98692/ENCFF793EOC.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF794WSD bam bam alignments dm6 ENCSR331EDA Control ChIP-seq /fly-donors/ENCDO531ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40155/'], '@type': ['Target', 'Item'], 'name': 'HLH106-dmelanogaster', 'label': 'HLH106', '@id': '/targets/HLH106-dmelanogaster/', 'title': 'HLH106 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd813012e-f5cb-4885-8924-7fe059000526', 'status': 'released'} dm3 3L 19781300 19802015 DNA 2019-07-02 modERN 200-800 1 1_1 50 /files/ENCFF793EOC/, /files/ENCFF479RCH/ 970752821 Kevin White, UChicago d969ae5d9d855cddc14032f58dfd8de5 https://www.encodeproject.org/files/ENCFF794WSD/@@download/ENCFF794WSD.bam released s3://encode-public/2019/06/18/7be0d463-d542-4dff-9280-69aa9f95fed2/ENCFF794WSD.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF014SKH bigWig bigWig signal of unique reads dm6 ENCSR331EDA Control ChIP-seq /fly-donors/ENCDO531ODU/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/40155/'], '@type': ['Target', 'Item'], 'name': 'HLH106-dmelanogaster', 'label': 'HLH106', '@id': '/targets/HLH106-dmelanogaster/', 'title': 'HLH106 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': 'd813012e-f5cb-4885-8924-7fe059000526', 'status': 'released'} dm3 3L 19781300 19802015 DNA 2019-07-02 modERN 200-800 1 1_1 /files/ENCFF794WSD/ 17602944 Kevin White, UChicago ccc25033e78c293cc18f065a11f4550d https://www.encodeproject.org/files/ENCFF014SKH/@@download/ENCFF014SKH.bigWig released s3://encode-public/2019/06/18/8bad539c-a71d-45db-936c-a2aca65b1a95/ENCFF014SKH.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF768QDH fastq fastq reads ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF408QFY/ 2526183652 Michael Snyder, Stanford 5cdeef19bc8711cfad9491f37f615738 SRA:SRR6214303 https://www.encodeproject.org/files/ENCFF768QDH/@@download/ENCFF768QDH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/03/db5f16fd-08c0-4c02-84cc-76ef3702f385/ENCFF768QDH.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF408QFY fastq fastq reads ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF768QDH/ 3130476259 Michael Snyder, Stanford 437852abad1e3246818f32b9314eba48 SRA:SRR6214303 https://www.encodeproject.org/files/ENCFF408QFY/@@download/ENCFF408QFY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/03/533a9dba-d856-478e-b88e-df680ad79fa4/ENCFF408QFY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF390SST bam bam alignments hg19 ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF768QDH/, /files/ENCFF807MUK/, /files/ENCFF408QFY/ 3906670714 ENCODE Processing Pipeline 591a0af19fe85a3d608f85c27c505e53 https://www.encodeproject.org/files/ENCFF390SST/@@download/ENCFF390SST.bam released s3://encode-public/2017/02/07/6952fe9c-ab71-45f5-9f3f-0cf66ab0f555/ENCFF390SST.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF209ONX bam bam unfiltered alignments GRCh38 ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF768QDH/, /files/ENCFF643CGH/, /files/ENCFF408QFY/ 5424338541 ENCODE Processing Pipeline 00288fff6d1d2da99cf329f74ff5459c https://www.encodeproject.org/files/ENCFF209ONX/@@download/ENCFF209ONX.bam released s3://encode-public/2017/02/07/d0da22b4-862a-46af-8389-f0b1fbfeefb6/ENCFF209ONX.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF827FZY bam bam unfiltered alignments hg19 ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF768QDH/, /files/ENCFF807MUK/, /files/ENCFF408QFY/ 5414809222 ENCODE Processing Pipeline bd7270161fedfcdc170c1e82bf698e0b https://www.encodeproject.org/files/ENCFF827FZY/@@download/ENCFF827FZY.bam released s3://encode-public/2017/02/07/897e30aa-126d-4184-bf1f-48abb8e8c1f3/ENCFF827FZY.bam ENCODE3 hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF189PXK bam bam alignments GRCh38 ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF768QDH/, /files/ENCFF643CGH/, /files/ENCFF408QFY/ 3914165780 ENCODE Processing Pipeline bf866eca3b17c38f173d0eed14f886fd https://www.encodeproject.org/files/ENCFF189PXK/@@download/ENCFF189PXK.bam released s3://encode-public/2017/02/07/b4bc05d7-0619-4592-bbc0-98703dbcfa18/ENCFF189PXK.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking, moderate library complexity ENCFF507VCC bam bam unfiltered alignments GRCh38 ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF768QDH/, /files/ENCFF408QFY/ 5425298377 ENCODE Processing Pipeline befc366272b864f0507496d24d66c20d https://www.encodeproject.org/files/ENCFF507VCC/@@download/ENCFF507VCC.bam released s3://encode-public/2020/06/02/c08a0768-a11c-4380-9e78-cb7d18abf832/ENCFF507VCC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF270AUW bam bam alignments GRCh38 ENCSR986YXU Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0008367 breast epithelium tissue Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF768QDH/, /files/ENCFF408QFY/ 3880535875 ENCODE Processing Pipeline 3fcd6728691aa06fe965b2dbd16e07c0 https://www.encodeproject.org/files/ENCFF270AUW/@@download/ENCFF270AUW.bam released s3://encode-public/2020/06/02/f3155ae3-a684-48d0-bb87-26022c7a883b/ENCFF270AUW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF316VNV fastq fastq reads ENCSR830XXA Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 804920030 Kevin White, UChicago 4e6be4a18521ab87998feb7da596b3ef https://www.encodeproject.org/files/ENCFF316VNV/@@download/ENCFF316VNV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/04/12/450e4638-f43c-4ab1-9b3f-0fbf3e529723/ENCFF316VNV.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF640NEP bam bam alignments dm6 ENCSR830XXA Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF316VNV/, /files/ENCFF479RCH/ 1088665137 Kevin White, UChicago 1d0327828c1951721ad164424ee6586b https://www.encodeproject.org/files/ENCFF640NEP/@@download/ENCFF640NEP.bam released s3://encode-public/2019/04/13/cb07a17a-6cfa-4674-8262-4d84bf972d76/ENCFF640NEP.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF951AKR bigWig bigWig signal of unique reads dm6 ENCSR830XXA Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF640NEP/ 17617683 Kevin White, UChicago 0dc178b853060ef9e05f8444d31717b7 https://www.encodeproject.org/files/ENCFF951AKR/@@download/ENCFF951AKR.bigWig released s3://encode-public/2019/04/16/8c308f1b-d0c2-497e-8b22-d972fbc923da/ENCFF951AKR.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF427FPK bigWig bigWig read-depth normalized signal dm6 ENCSR830XXA Control ChIP-seq /fly-donors/ENCDO302XYS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41393/'], '@type': ['Target', 'Item'], 'name': 'CG14710-dmelanogaster', 'label': 'CG14710', '@id': '/targets/CG14710-dmelanogaster/', 'title': 'CG14710 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0cd2904f-e46d-4543-8058-7e6f863d8309', 'status': 'released'} dm3 3R 7440206 7461263 DNA 2019-05-23 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF640NEP/ 17626469 Kevin White, UChicago e7f3ec5b7699c4ad5591eb90bb6682c9 https://www.encodeproject.org/files/ENCFF427FPK/@@download/ENCFF427FPK.bigWig released s3://encode-public/2019/04/16/bdf001b8-3ebe-48ea-b4d3-9b0383eede91/ENCFF427FPK.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF466WDC fastq fastq reads ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF273KUS/ 2645958066 Michael Snyder, Stanford 2c723ed100cb4034011859ea30bfa4a6 SRA:SRR6213972 https://www.encodeproject.org/files/ENCFF466WDC/@@download/ENCFF466WDC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/23/e1942e77-2c49-4949-b2d6-c157d22ae00c/ENCFF466WDC.fastq.gz ENCFF273KUS fastq fastq reads ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF466WDC/ 2595846600 Michael Snyder, Stanford 48255e5dd759667d46b18484ae0a06c1 SRA:SRR6213972 https://www.encodeproject.org/files/ENCFF273KUS/@@download/ENCFF273KUS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/23/20146f99-ec1e-490d-9e9b-4b163e2cee22/ENCFF273KUS.fastq.gz ENCFF740BZH bam bam unfiltered alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 101 /files/ENCFF273KUS/, /files/ENCFF643CGH/, /files/ENCFF466WDC/ 5901826126 ENCODE Processing Pipeline cd2b34270ba77cbed23c47b07a2e9983 https://www.encodeproject.org/files/ENCFF740BZH/@@download/ENCFF740BZH.bam released s3://encode-public/2017/03/01/df71d5c4-f4d2-400e-adbd-90e1e3a7685e/ENCFF740BZH.bam ENCODE3 GRCh38 archived ENCFF357UZL bam bam alignments hg19 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 101 /files/ENCFF273KUS/, /files/ENCFF807MUK/, /files/ENCFF466WDC/ 5024818365 ENCODE Processing Pipeline 6fef13df855a92d26e0a898b56ef275a https://www.encodeproject.org/files/ENCFF357UZL/@@download/ENCFF357UZL.bam released s3://encode-public/2017/03/01/68cd5c1d-1457-4117-bfef-3af826f39ef0/ENCFF357UZL.bam ENCODE3 hg19 archived ENCFF367CAA bam bam alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 101 /files/ENCFF273KUS/, /files/ENCFF643CGH/, /files/ENCFF466WDC/ 5032010096 ENCODE Processing Pipeline 6652679b902894714ab2d90bd4d06863 https://www.encodeproject.org/files/ENCFF367CAA/@@download/ENCFF367CAA.bam released s3://encode-public/2017/03/01/fd35e5e9-5677-413d-bef1-5b6d2c0f3210/ENCFF367CAA.bam ENCODE3 GRCh38 archived ENCFF375TGP bam bam unfiltered alignments hg19 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 101 /files/ENCFF273KUS/, /files/ENCFF807MUK/, /files/ENCFF466WDC/ 5885105804 ENCODE Processing Pipeline 2082989b6b8ecf5e8474aff98d563613 https://www.encodeproject.org/files/ENCFF375TGP/@@download/ENCFF375TGP.bam released s3://encode-public/2017/03/01/8a4c844b-9df6-4ef6-9ede-3cadb7c6f3dc/ENCFF375TGP.bam ENCODE3 hg19 archived ENCFF872HTM fastq fastq reads ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF996TKV/ 4358843005 Michael Snyder, Stanford 09540b30f798ec55ce5d2a0c66dfa9d8 SRA:SRR6213973 https://www.encodeproject.org/files/ENCFF872HTM/@@download/ENCFF872HTM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/07/18/e244cfac-0ccf-454f-b97d-97e404212918/ENCFF872HTM.fastq.gz ENCFF996TKV fastq fastq reads ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF872HTM/ 4406338267 Michael Snyder, Stanford b20f6ea785d90171444ea87f7243acc1 SRA:SRR6213973 https://www.encodeproject.org/files/ENCFF996TKV/@@download/ENCFF996TKV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/07/18/c8057e05-b5b5-4f28-8a52-2e3432aa126b/ENCFF996TKV.fastq.gz ENCFF107RBB bam bam unfiltered alignments hg19 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF872HTM/, /files/ENCFF996TKV/ 8844858216 ENCODE Processing Pipeline 7dd6538ddcdb5cbe7268b9cf7db12882 https://www.encodeproject.org/files/ENCFF107RBB/@@download/ENCFF107RBB.bam released s3://encode-public/2017/07/20/46b9c8dd-5d8a-4c41-b433-28a6ce89de02/ENCFF107RBB.bam ENCODE3 hg19 archived ENCFF819GVH bam bam unfiltered alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF872HTM/, /files/ENCFF996TKV/ 8867590481 ENCODE Processing Pipeline 43007e65dff11ceb8fe8a751ba8bea71 https://www.encodeproject.org/files/ENCFF819GVH/@@download/ENCFF819GVH.bam released s3://encode-public/2017/07/20/23d01d05-e1cb-463d-9b09-9199f715dfc9/ENCFF819GVH.bam ENCODE3 GRCh38 archived ENCFF006HDB bam bam alignments hg19 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF872HTM/, /files/ENCFF996TKV/ 7401697908 ENCODE Processing Pipeline 55284cc560d4e054484b1d44062f1d8e https://www.encodeproject.org/files/ENCFF006HDB/@@download/ENCFF006HDB.bam released s3://encode-public/2017/07/20/d57cce43-9c9e-4060-9ae4-757dd76c103b/ENCFF006HDB.bam ENCODE3 hg19 archived ENCFF567SBX bam bam alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF872HTM/, /files/ENCFF996TKV/ 7413025156 ENCODE Processing Pipeline 56c2770acb0414b05d42bb5b22395aa2 https://www.encodeproject.org/files/ENCFF567SBX/@@download/ENCFF567SBX.bam released s3://encode-public/2017/07/20/ca2ce5ab-dc49-4eea-9947-ee78832d410f/ENCFF567SBX.bam ENCODE3 GRCh38 archived ENCFF303WZD bam bam unfiltered alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF273KUS/, /files/ENCFF466WDC/ 5872359654 ENCODE Processing Pipeline 77cb6015fb595ff56cac831882bca4f2 https://www.encodeproject.org/files/ENCFF303WZD/@@download/ENCFF303WZD.bam released s3://encode-public/2020/06/02/152fddf2-9e74-4da7-a772-9b3d71f12a2f/ENCFF303WZD.bam ENCODE4 GRCh38 released ENCFF464BUQ bam bam alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF872HTM/, /files/ENCFF996TKV/ 7398846571 ENCODE Processing Pipeline a664a220b8539cfe49ab1b01ddcd62e5 https://www.encodeproject.org/files/ENCFF464BUQ/@@download/ENCFF464BUQ.bam released s3://encode-public/2020/06/02/e40195e4-6166-46f2-bf09-0401c52b367c/ENCFF464BUQ.bam ENCODE4 GRCh38 released ENCFF135RMJ bam bam unfiltered alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF872HTM/, /files/ENCFF996TKV/ 8836108698 ENCODE Processing Pipeline 6479ee3230cd0f795a4b98fff938fda9 https://www.encodeproject.org/files/ENCFF135RMJ/@@download/ENCFF135RMJ.bam released s3://encode-public/2020/06/02/a314e752-f655-42a5-b2da-5ab9b958011e/ENCFF135RMJ.bam ENCODE4 GRCh38 released ENCFF750IHA bam bam alignments GRCh38 ENCSR716BTZ Control ChIP-seq /human-donors/ENCDO119FJJ/ EFO:0007752 VCaP cell line Homo sapiens DNA 2017-04-10 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF273KUS/, /files/ENCFF466WDC/ 4970737513 ENCODE Processing Pipeline 24e8d33a59ac57e2f9563bbf6bd89065 https://www.encodeproject.org/files/ENCFF750IHA/@@download/ENCFF750IHA.bam released s3://encode-public/2020/06/02/6702b3ed-cd1c-4171-9fe3-0ab100e5a566/ENCFF750IHA.bam ENCODE4 GRCh38 released ENCFF763XPD fastq fastq reads ENCSR325SCU Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF227FVB/ 2395124242 Michael Snyder, Stanford e7ac9539eae91a998ff0d60dfc2aad3f https://www.encodeproject.org/files/ENCFF763XPD/@@download/ENCFF763XPD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/14/338252ab-751f-413a-8c12-3b09be677071/ENCFF763XPD.fastq.gz mild to moderate bottlenecking ENCFF227FVB fastq fastq reads ENCSR325SCU Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF763XPD/ 2509202990 Michael Snyder, Stanford 5c74546307e05018a3c96d9d9c183a7a https://www.encodeproject.org/files/ENCFF227FVB/@@download/ENCFF227FVB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/14/2c53e08c-c3fa-4a63-8dbc-774114165866/ENCFF227FVB.fastq.gz mild to moderate bottlenecking ENCFF858SHM bam bam alignments GRCh38 ENCSR325SCU Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF763XPD/, /files/ENCFF227FVB/ 3929178130 ENCODE Processing Pipeline 57173ad3134c4f8128aa41a1d024f98f https://www.encodeproject.org/files/ENCFF858SHM/@@download/ENCFF858SHM.bam released s3://encode-public/2020/05/11/b141ab90-5318-4bd6-bf68-459d62ae2971/ENCFF858SHM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF371UBI bam bam unfiltered alignments GRCh38 ENCSR325SCU Control ChIP-seq /human-donors/ENCDO882UJI/ EFO:0009747 WTC11 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2969/'], '@type': ['Target', 'Item'], 'name': 'GTF2I-human', 'label': 'GTF2I', '@id': '/targets/GTF2I-human/', 'title': 'GTF2I (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '47228b91-b77a-4634-8f40-8e77ec0becab', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF763XPD/, /files/ENCFF227FVB/ 4832365332 ENCODE Processing Pipeline 60b3ede171210a83a1cbf04662fe3995 https://www.encodeproject.org/files/ENCFF371UBI/@@download/ENCFF371UBI.bam released s3://encode-public/2020/05/11/2883b0b3-cc9d-4768-9a47-9d5bc8710ae6/ENCFF371UBI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF274GXF fastq fastq reads ENCSR233WMP Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000115 endothelial cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 441267415 Bradley Bernstein, Broad 3511ac9bb43c688dded43e04b28eaf84 SRA:SRR14103383 https://www.encodeproject.org/files/ENCFF274GXF/@@download/ENCFF274GXF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/db2e7c7a-4cdd-41d8-aeb9-9ff7007d1c89/ENCFF274GXF.fastq.gz ENCFF771TLG fastq fastq reads ENCSR233WMP Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000115 endothelial cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 404823910 Bradley Bernstein, Broad 90c27f81d85a28c3adb487728eed2875 SRA:SRR14103387 https://www.encodeproject.org/files/ENCFF771TLG/@@download/ENCFF771TLG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/562f6952-e256-4bbe-b716-c3edf15727ad/ENCFF771TLG.fastq.gz ENCFF583RVC fastq fastq reads ENCSR233WMP Control ChIP-seq /human-donors/ENCDO336AAA/ CL:0000115 endothelial cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 75 single-ended 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released s3://encode-public/2020/05/15/d05ea0d0-2e79-49b7-a85c-e08995aff732/ENCFF939STM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF748ZLW fastq fastq reads ENCSR472XKJ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 129124435 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'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF040VVE/ 10035998 Kevin White, UChicago b09bceaa23d936ca183515094a823361 https://www.encodeproject.org/files/ENCFF374CGW/@@download/ENCFF374CGW.bigWig archived s3://encode-public/2017/04/29/f85e0160-067b-424d-993b-04d6b790eb1a/ENCFF374CGW.bigWig missing genetic modification characterization, missing biosample characterization ENCFF344MEH bigWig bigWig read-depth normalized signal ce11 ENCSR472XKJ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', 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'14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF748ZLW/, /files/ENCFF720AAI/, /files/ENCFF586MOL/ 382247121 Kevin White, UChicago 8bd47b04ee64ccc7a5aeda76ebf88deb https://www.encodeproject.org/files/ENCFF123JUN/@@download/ENCFF123JUN.bam released s3://encode-public/2017/11/13/84d09495-dee7-4e98-b6ba-a939f6ec1b42/ENCFF123JUN.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF586WHZ bam bam alignments ce10 ENCSR472XKJ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF748ZLW/, /files/ENCFF720AAI/, /files/ENCFF987UMF/ 381846815 Kevin White, UChicago b18e12625b1ee9c6327038a85749967b https://www.encodeproject.org/files/ENCFF586WHZ/@@download/ENCFF586WHZ.bam released s3://encode-public/2017/11/13/9e24017c-6995-46f8-a721-d8680a1df10f/ENCFF586WHZ.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF401ZRJ bigWig bigWig read-depth normalized signal ce11 ENCSR472XKJ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF123JUN/ 9982679 Kevin White, UChicago 01405c9744ccfebbe8972029ac806a25 https://www.encodeproject.org/files/ENCFF401ZRJ/@@download/ENCFF401ZRJ.bigWig released s3://encode-public/2017/11/13/ca23b225-ffd6-4086-a123-fcce7d88b1ed/ENCFF401ZRJ.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF228JFH bigWig bigWig signal of unique reads ce11 ENCSR472XKJ Control ChIP-seq /worm-donors/ENCDO685ETS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/185766/'], '@type': ['Target', 'Item'], 'name': 'ceh-82-celegans', 'label': 'ceh-82', '@id': '/targets/ceh-82-celegans/', 'title': 'ceh-82 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'baec14fb-c264-4353-8be1-699d395b9ebf', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF123JUN/ 10038378 Kevin White, UChicago 2a0ebbabaab53c93c93702e54579f069 https://www.encodeproject.org/files/ENCFF228JFH/@@download/ENCFF228JFH.bigWig released s3://encode-public/2017/11/13/78a6ad8c-b2d2-474f-a7f4-94e818b99096/ENCFF228JFH.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF121GNJ fastq fastq reads ENCSR516XLO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 2945225412 Richard Myers, HAIB d1c2a396d002c7fd764b7aef3f3928e1 SRA:SRR14105344 https://www.encodeproject.org/files/ENCFF121GNJ/@@download/ENCFF121GNJ.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/04/16/aea66276-16ef-426e-ae8e-655e6b117f57/ENCFF121GNJ.fastq.gz ENCFF705OXL bam bam unfiltered alignments GRCh38 ENCSR516XLO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF121GNJ/ 2607476157 ENCODE Processing Pipeline d6f284078c4258320a6f69c233a8cebb https://www.encodeproject.org/files/ENCFF705OXL/@@download/ENCFF705OXL.bam released s3://encode-public/2020/05/11/b301d3fa-2a3b-4a23-a0c8-23faa3942fb8/ENCFF705OXL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF089RYQ bam bam alignments GRCh38 ENCSR516XLO Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF121GNJ/ 1307864160 ENCODE Processing Pipeline af0a6dd2efd37b72d272b9fd671846c0 https://www.encodeproject.org/files/ENCFF089RYQ/@@download/ENCFF089RYQ.bam released s3://encode-public/2020/05/11/f064c8f8-edf4-4c04-b86a-ede39de40e15/ENCFF089RYQ.bam ENCODE4 v1.4.0 GRCh38 released ENCFF029CEA fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 327673318 Bradley Bernstein, Broad 7e4d576af7b71f0782926aaeebb35874 SRA:SRR14104463 https://www.encodeproject.org/files/ENCFF029CEA/@@download/ENCFF029CEA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/50e57ec6-34b1-4082-b42a-00b9cb172367/ENCFF029CEA.fastq.gz ENCFF587EQK fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 311697517 Bradley Bernstein, Broad 142b33ac9ea10e081c24999f81fb215c SRA:SRR14104464 https://www.encodeproject.org/files/ENCFF587EQK/@@download/ENCFF587EQK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/f72aae5a-7384-445e-b5b9-f615840edcc1/ENCFF587EQK.fastq.gz ENCFF802HNS fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 319294085 Bradley Bernstein, Broad 6ae919522f98d23919ad73d7d1faad7c SRA:SRR14104465 https://www.encodeproject.org/files/ENCFF802HNS/@@download/ENCFF802HNS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/1821e8e6-2e35-4738-9e90-55ee676ab885/ENCFF802HNS.fastq.gz ENCFF577AGL fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 225189048 Bradley Bernstein, Broad a7cbc21b2a946b243d38cb3dc911f015 SRA:SRR14104475 https://www.encodeproject.org/files/ENCFF577AGL/@@download/ENCFF577AGL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5be61fb6-99b6-43a3-a783-7a1b874455eb/ENCFF577AGL.fastq.gz ENCFF591SPI fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 367337780 Bradley Bernstein, Broad 2ca408b666e270bd8f5e6b2792a52332 SRA:SRR14104471 https://www.encodeproject.org/files/ENCFF591SPI/@@download/ENCFF591SPI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/5a7c7868-8d32-4b44-b2fd-c06e5eacf2c1/ENCFF591SPI.fastq.gz ENCFF601BTI fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 364382105 Bradley Bernstein, Broad eed6535e29b37cb5f2d3f93cb10f4733 SRA:SRR14104472 https://www.encodeproject.org/files/ENCFF601BTI/@@download/ENCFF601BTI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3aa4506b-6b49-4cb8-aa56-4cb63f181eca/ENCFF601BTI.fastq.gz ENCFF208DYI fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 227054213 Bradley Bernstein, Broad b199cfae6629ad2217f209def6e7aae2 SRA:SRR14104476 https://www.encodeproject.org/files/ENCFF208DYI/@@download/ENCFF208DYI.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/bea034b6-a39a-4bd6-a15c-08ab73b284aa/ENCFF208DYI.fastq.gz ENCFF135ONO fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 560510450 Bradley Bernstein, Broad ffe4c7b4c518106bb43700e33661ea5b SRA:SRR14104467 https://www.encodeproject.org/files/ENCFF135ONO/@@download/ENCFF135ONO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/c28578a5-6c1d-4ef1-aedb-52eaa5e80672/ENCFF135ONO.fastq.gz ENCFF912MKK fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 75 single-ended 335655215 Bradley Bernstein, Broad 5e12fc1b00ff6fe95460819a225fe2fd SRA:SRR14104473 https://www.encodeproject.org/files/ENCFF912MKK/@@download/ENCFF912MKK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/659dee75-edec-4038-8814-0ff73776df67/ENCFF912MKK.fastq.gz ENCFF615YHE fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 323136318 Bradley Bernstein, Broad 42fff697aaeedd24770375b35cfa9de4 SRA:SRR14104466 https://www.encodeproject.org/files/ENCFF615YHE/@@download/ENCFF615YHE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4d104583-7c8e-4130-916a-3c9a1613c4db/ENCFF615YHE.fastq.gz ENCFF720AXO fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 567463147 Bradley Bernstein, Broad 7f7aaee1e130fc9295f7dd105904cc4e SRA:SRR14104468 https://www.encodeproject.org/files/ENCFF720AXO/@@download/ENCFF720AXO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/fc170b2a-4cd6-4654-b539-58dfa898d352/ENCFF720AXO.fastq.gz ENCFF913HGK fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 231718482 Bradley Bernstein, Broad 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80ab478ec716a5b2c4ccb92433874fdc SRA:SRR14104474 https://www.encodeproject.org/files/ENCFF964AKX/@@download/ENCFF964AKX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/29443b56-61a1-4040-98e0-b49cf3c3d91c/ENCFF964AKX.fastq.gz ENCFF175DNE fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 578279372 Bradley Bernstein, Broad 006b63857274c243d606e9b69ece2270 SRA:SRR14104470 https://www.encodeproject.org/files/ENCFF175DNE/@@download/ENCFF175DNE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/f8e92e01-dbcd-4b32-84e5-f47079dc04c4/ENCFF175DNE.fastq.gz ENCFF870VEW fastq fastq reads ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 224167744 Bradley Bernstein, Broad 3390854cdc3ee2e2f12941cc1361c323 SRA:SRR14104478 https://www.encodeproject.org/files/ENCFF870VEW/@@download/ENCFF870VEW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/eaf175c1-46ab-4dbd-a45e-356dbf6e58ce/ENCFF870VEW.fastq.gz ENCFF235MAD bam bam alignments GRCh38 ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF029CEA/, /files/ENCFF587EQK/, /files/ENCFF591SPI/, /files/ENCFF964AKX/, /files/ENCFF912MKK/, /files/ENCFF615YHE/, /files/ENCFF601BTI/, /files/ENCFF110MCL/, /files/ENCFF802HNS/ 2307987362 ENCODE Processing Pipeline a8ee1a561b00f756ff4190be970e0263 https://www.encodeproject.org/files/ENCFF235MAD/@@download/ENCFF235MAD.bam released s3://encode-public/2020/06/14/84fa989b-19c4-4a35-b6f7-4b220df03821/ENCFF235MAD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF299MBA bam bam unfiltered alignments GRCh38 ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 75 /files/ENCFF029CEA/, /files/ENCFF587EQK/, /files/ENCFF591SPI/, /files/ENCFF964AKX/, /files/ENCFF912MKK/, /files/ENCFF615YHE/, /files/ENCFF601BTI/, /files/ENCFF110MCL/, /files/ENCFF802HNS/ 2715952247 ENCODE Processing Pipeline 9ed0996b6cc55eea83191aebcafa21c8 https://www.encodeproject.org/files/ENCFF299MBA/@@download/ENCFF299MBA.bam released s3://encode-public/2020/06/14/38d3ece2-3109-4c14-84d8-8fae11754208/ENCFF299MBA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF842LXK bam bam alignments GRCh38 ENCSR318RRK Control ChIP-seq /human-donors/ENCDO222AAA/ CL:0011012 neural crest cell in vitro differentiated cells Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 75 /files/ENCFF577AGL/, /files/ENCFF175DNE/, /files/ENCFF135ONO/, /files/ENCFF870VEW/, /files/ENCFF991EYB/, /files/ENCFF720AXO/, /files/ENCFF208DYI/, /files/ENCFF110MCL/, /files/ENCFF913HGK/ 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ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF843ALO/ 3648118808 Michael Snyder, Stanford 9c2cf00b4e4c6ca8762ec55bb6bf6a55 https://www.encodeproject.org/files/ENCFF772ATW/@@download/ENCFF772ATW.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/06/13/9b08db47-0666-41a4-b442-0b365dcb0695/ENCFF772ATW.fastq.gz low read depth ENCFF843ALO fastq fastq reads ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF772ATW/ 3735328654 Michael Snyder, Stanford 1226702b9b6736e33e146e69c6892b29 https://www.encodeproject.org/files/ENCFF843ALO/@@download/ENCFF843ALO.fastq.gz Illumina HiSeq 2000 archived s3://encode-public/2017/06/13/5a91b5a8-3eb8-49cb-9397-b14c3eb1dec2/ENCFF843ALO.fastq.gz low read depth ENCFF889CFT fastq fastq reads ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF797ZPJ/ 5327559448 Michael Snyder, Stanford 2d3c279f9f3bfed9edc01655135843c3 SRA:SRR6213080 https://www.encodeproject.org/files/ENCFF889CFT/@@download/ENCFF889CFT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/08/11/1765ec92-fd98-476f-b54c-11bd33ee4bfe/ENCFF889CFT.fastq.gz low read depth ENCFF797ZPJ fastq fastq reads ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF889CFT/ 5482260493 Michael Snyder, Stanford 62f80e521d87e29a06958cf491b55674 SRA:SRR6213080 https://www.encodeproject.org/files/ENCFF797ZPJ/@@download/ENCFF797ZPJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/08/11/b7a1635a-c106-4b3d-929d-aa07f2bdddcd/ENCFF797ZPJ.fastq.gz low read depth ENCFF943CMT fastq fastq reads ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 paired-ended 1 /files/ENCFF766ORZ/ 3083249005 Michael Snyder, Stanford e4787a94feb0396d16c50b33f2e7f04a SRA:SRR6213079 https://www.encodeproject.org/files/ENCFF943CMT/@@download/ENCFF943CMT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/08/11/3061e342-27d5-42ef-95b1-b4bc0b25f14c/ENCFF943CMT.fastq.gz low read depth ENCFF766ORZ fastq fastq reads ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 paired-ended 2 /files/ENCFF943CMT/ 3097150840 Michael Snyder, Stanford 37c4c0b1cb334d63652443d7e3ba7a17 SRA:SRR6213079 https://www.encodeproject.org/files/ENCFF766ORZ/@@download/ENCFF766ORZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/08/11/c15b5936-f437-4767-b53e-e4707689177e/ENCFF766ORZ.fastq.gz low read depth ENCFF717YNY bam bam unfiltered alignments hg19 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF943CMT/, /files/ENCFF807MUK/, /files/ENCFF766ORZ/ 6380437948 ENCODE Processing Pipeline 4b78257a3ef28e1389cb5c3ff9ae7aea https://www.encodeproject.org/files/ENCFF717YNY/@@download/ENCFF717YNY.bam released s3://encode-public/2017/08/16/2ed3f102-e88a-494d-8dce-809e695a8886/ENCFF717YNY.bam ENCODE3 hg19 archived low read depth ENCFF205UVR bam bam alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF943CMT/, /files/ENCFF643CGH/, /files/ENCFF766ORZ/ 2713904745 ENCODE Processing Pipeline ee0e45a6f188ca7e8d68b5481ed8f530 https://www.encodeproject.org/files/ENCFF205UVR/@@download/ENCFF205UVR.bam released s3://encode-public/2017/08/16/0cd8982d-b9cf-4a1a-93da-cffc1270d546/ENCFF205UVR.bam ENCODE3 GRCh38 archived low read depth ENCFF959SRT bam bam alignments hg19 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF943CMT/, /files/ENCFF807MUK/, /files/ENCFF766ORZ/ 2712047344 ENCODE Processing Pipeline 0d5b6c18bccb8abdcbcd5ed7f92906ab https://www.encodeproject.org/files/ENCFF959SRT/@@download/ENCFF959SRT.bam released s3://encode-public/2017/08/16/6da61cc7-f4f6-4ca4-99ab-9ad36eeac642/ENCFF959SRT.bam ENCODE3 hg19 archived low read depth ENCFF073IIU bam bam unfiltered alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF943CMT/, /files/ENCFF643CGH/, /files/ENCFF766ORZ/ 6403190083 ENCODE Processing Pipeline 2fba2ae396493471458faf9f977cdda7 https://www.encodeproject.org/files/ENCFF073IIU/@@download/ENCFF073IIU.bam released s3://encode-public/2017/08/16/c3b184ee-7fb6-4902-b1c9-f64716d501dc/ENCFF073IIU.bam ENCODE3 GRCh38 archived low read depth ENCFF682XDO bam bam unfiltered alignments hg19 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF889CFT/, /files/ENCFF807MUK/, /files/ENCFF797ZPJ/ 10593156127 ENCODE Processing Pipeline a48fabcfc0fb2f16a1424c25f02b0f73 https://www.encodeproject.org/files/ENCFF682XDO/@@download/ENCFF682XDO.bam released s3://encode-public/2017/08/16/5853c852-8395-46e4-8ae2-9f9c4f9c04e8/ENCFF682XDO.bam ENCODE3 hg19 archived low read depth ENCFF856NHW bam bam alignments hg19 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF889CFT/, /files/ENCFF807MUK/, /files/ENCFF797ZPJ/ 8617983580 ENCODE Processing Pipeline 279d1f5366e10146aeec1921dd984595 https://www.encodeproject.org/files/ENCFF856NHW/@@download/ENCFF856NHW.bam released s3://encode-public/2017/08/16/a1db9a89-f7ec-4795-a3ac-6e8cadac71af/ENCFF856NHW.bam ENCODE3 hg19 archived low read depth ENCFF715ULM bam bam unfiltered alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF889CFT/, /files/ENCFF643CGH/, /files/ENCFF797ZPJ/ 10617550170 ENCODE Processing Pipeline b005a71e86f71a54f6305a7d803296e3 https://www.encodeproject.org/files/ENCFF715ULM/@@download/ENCFF715ULM.bam released s3://encode-public/2017/08/16/df9cec15-08dc-4938-b480-4b38b42a5236/ENCFF715ULM.bam ENCODE3 GRCh38 archived low read depth ENCFF489VMD bam bam alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF889CFT/, /files/ENCFF643CGH/, /files/ENCFF797ZPJ/ 8628041778 ENCODE Processing Pipeline 42fe17d176ed45fca2ed5ee70e01713c https://www.encodeproject.org/files/ENCFF489VMD/@@download/ENCFF489VMD.bam released s3://encode-public/2017/08/16/e4b2bd78-68f0-48ad-989d-b0433d904550/ENCFF489VMD.bam ENCODE3 GRCh38 archived low read depth ENCFF469YSV bam bam unfiltered alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF889CFT/, /files/ENCFF797ZPJ/ 10741553439 ENCODE Processing Pipeline e2a18c7be0a04fc76a3d9d93913aa74e https://www.encodeproject.org/files/ENCFF469YSV/@@download/ENCFF469YSV.bam released s3://encode-public/2020/06/02/38550982-93d6-4f86-8fb5-07d109751526/ENCFF469YSV.bam ENCODE4 GRCh38 released low read depth ENCFF299VCN bam bam unfiltered alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF943CMT/, /files/ENCFF766ORZ/ 6610234681 ENCODE Processing Pipeline 03ab6e5325015425a9077f47f4e4264d https://www.encodeproject.org/files/ENCFF299VCN/@@download/ENCFF299VCN.bam released s3://encode-public/2020/06/02/fbf26410-e7d0-4123-837d-d6219f12d6ea/ENCFF299VCN.bam ENCODE4 GRCh38 released low read depth ENCFF824VIG bam bam alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 2 2_1 101 /files/ENCFF110MCL/, /files/ENCFF943CMT/, /files/ENCFF766ORZ/ 3151702801 ENCODE Processing Pipeline da4d718486c7dab11dd9c0f4d4f80467 https://www.encodeproject.org/files/ENCFF824VIG/@@download/ENCFF824VIG.bam released s3://encode-public/2020/06/02/0ee96a12-50f7-4f7d-8e6b-44fa292058e2/ENCFF824VIG.bam ENCODE4 GRCh38 released low read depth ENCFF699LBQ bam bam alignments GRCh38 ENCSR305PNK Control ChIP-seq /human-donors/ENCDO000ABE/ EFO:0002824 HCT116 cell line Homo sapiens DNA 2017-02-08 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF889CFT/, /files/ENCFF797ZPJ/ 8822483696 ENCODE Processing Pipeline 32ed5fcbb4e9ea34d1f0cc8c9aeda611 https://www.encodeproject.org/files/ENCFF699LBQ/@@download/ENCFF699LBQ.bam released s3://encode-public/2020/06/02/f9ce08dd-ac0f-41cd-880c-2f571013902b/ENCFF699LBQ.bam ENCODE4 GRCh38 released low read depth ENCFF246JFT fastq fastq reads ENCSR615JHA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 single-ended 1983398364 Richard Myers, HAIB 82b1659eb2a00719bc3f325682bd3aef SRA:SRR14107660 https://www.encodeproject.org/files/ENCFF246JFT/@@download/ENCFF246JFT.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/04/16/5ff14167-54ae-461e-8262-5e60fef9ddb1/ENCFF246JFT.fastq.gz mild to moderate bottlenecking, low read depth ENCFF402QXK bam bam unfiltered alignments GRCh38 ENCSR615JHA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF246JFT/ 2021766815 ENCODE Processing Pipeline e4292562b788c1cddd43bde814b68a14 https://www.encodeproject.org/files/ENCFF402QXK/@@download/ENCFF402QXK.bam released s3://encode-public/2020/05/11/04998115-95dd-49fe-80ea-7d194c4bbcc0/ENCFF402QXK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF954YHR bam bam alignments GRCh38 ENCSR615JHA Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA formaldehyde 2020-06-26 ENCODE sonication (generic) 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF246JFT/ 1057986773 ENCODE Processing Pipeline 24b7931fa1b7b7786c5fd5cdd35f85f7 https://www.encodeproject.org/files/ENCFF954YHR/@@download/ENCFF954YHR.bam released s3://encode-public/2020/05/11/58c88fee-80ca-49d3-8f80-50ee750613db/ENCFF954YHR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF196MRD fastq fastq reads ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 110549221 Michael Snyder, Stanford 651892360bc07fa15180f032c560eeba https://www.encodeproject.org/files/ENCFF196MRD/@@download/ENCFF196MRD.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/c34189e4-6659-40ea-99df-c45ac4726e70/ENCFF196MRD.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF212KCS fastq fastq reads ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 110147858 Michael Snyder, Stanford 7ae68596be9ead984e9b9b20a2b820f2 https://www.encodeproject.org/files/ENCFF212KCS/@@download/ENCFF212KCS.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/c92d7587-7378-4d39-a1d0-686eeff1ec4c/ENCFF212KCS.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF552WCH bam bam alignments ce10 ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF196MRD/, /files/ENCFF212KCS/, /files/ENCFF987UMF/ 241038109 Kevin White, UChicago c7ae21032b347efd358ce7362087c7ea https://www.encodeproject.org/files/ENCFF552WCH/@@download/ENCFF552WCH.bam released s3://encode-public/2017/04/27/929b243b-5cac-46b0-b093-36aa720cdf75/ENCFF552WCH.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF578PJP bam bam alignments ce11 ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF196MRD/, /files/ENCFF212KCS/, /files/ENCFF586MOL/ 241230359 Kevin White, UChicago 58095b35dbb670b5e68eda13fde2f68c https://www.encodeproject.org/files/ENCFF578PJP/@@download/ENCFF578PJP.bam released s3://encode-public/2017/04/27/3c1f6569-9b7b-4906-8df6-f958ade4f901/ENCFF578PJP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF777WDL bigWig bigWig signal of unique reads ce10 ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF552WCH/ 10008438 Kevin White, UChicago 341e6724ec5777f370d4ce92a987f57e https://www.encodeproject.org/files/ENCFF777WDL/@@download/ENCFF777WDL.bigWig released s3://encode-public/2017/04/29/2de26b82-d59d-410d-b17c-117e9b4345c7/ENCFF777WDL.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF796NSX bigWig bigWig read-depth normalized signal ce10 ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF552WCH/ 10029791 Kevin White, UChicago 81b0a4efba542decef43cfcd79cad38a https://www.encodeproject.org/files/ENCFF796NSX/@@download/ENCFF796NSX.bigWig released s3://encode-public/2017/04/29/3a29d656-355e-4468-8107-9574f809b476/ENCFF796NSX.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF669UZL bigWig bigWig read-depth normalized signal ce11 ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF578PJP/ 10016982 Kevin White, UChicago 29bb4946b056f74e85bd5f481020a90f https://www.encodeproject.org/files/ENCFF669UZL/@@download/ENCFF669UZL.bigWig released s3://encode-public/2017/04/29/b6cf2c32-e313-4252-8e62-8a0db1c7b1d0/ENCFF669UZL.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF068KNT bigWig bigWig signal of unique reads ce11 ENCSR497VLF Control ChIP-seq /worm-donors/ENCDO335BNS/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/175993/'], '@type': ['Target', 'Item'], 'name': 'nhr-10-celegans', 'label': 'nhr-10', '@id': '/targets/nhr-10-celegans/', 'title': 'nhr-10 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '6615c891-5a61-4b92-aab1-f941abe062ea', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF578PJP/ 10002848 Kevin White, UChicago cf0dc876f67ef82be842b7daa94dfc6d https://www.encodeproject.org/files/ENCFF068KNT/@@download/ENCFF068KNT.bigWig released s3://encode-public/2017/04/29/86fa7987-ce04-43d6-920d-7eb413d9e50f/ENCFF068KNT.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF640MTD fastq fastq reads ENCSR855NLW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF176YND/ 3618806448 Michael Snyder, Stanford b4fab203866b91b0e1641098cf0d5268 SRA:SRR14847821 https://www.encodeproject.org/files/ENCFF640MTD/@@download/ENCFF640MTD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/13/1371c836-936f-4207-826b-9c169fe9602f/ENCFF640MTD.fastq.gz mild to moderate bottlenecking ENCFF176YND fastq fastq reads ENCSR855NLW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF640MTD/ 3860259440 Michael Snyder, Stanford c66f5e70ac6a9e1a17723485971c3a70 SRA:SRR14847821 https://www.encodeproject.org/files/ENCFF176YND/@@download/ENCFF176YND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/13/276b8423-484c-4875-acdc-4079f6722b50/ENCFF176YND.fastq.gz mild to moderate bottlenecking ENCFF960ICK bam bam alignments GRCh38 ENCSR855NLW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF640MTD/, /files/ENCFF176YND/ 5062427777 ENCODE Processing Pipeline 5ed7ecbe2a036f0100ab03b8b806c0c3 https://www.encodeproject.org/files/ENCFF960ICK/@@download/ENCFF960ICK.bam released s3://encode-public/2020/05/15/b56a4bc8-bad5-4eeb-a5fa-a25fec8e5dc2/ENCFF960ICK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF849ZVT bam bam unfiltered alignments GRCh38 ENCSR855NLW Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8091/'], '@type': ['Target', 'Item'], 'name': 'HMGA2-human', 'label': 'HMGA2', '@id': '/targets/HMGA2-human/', 'title': 'HMGA2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ae8f75d6-b585-4943-9ca2-9118622ca3e5', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF640MTD/, /files/ENCFF176YND/ 6827195331 ENCODE Processing Pipeline aef035efa29b075d46789f6deeca7efb https://www.encodeproject.org/files/ENCFF849ZVT/@@download/ENCFF849ZVT.bam released s3://encode-public/2020/05/15/6b2a5a28-3b30-4726-b9c6-5c39edf1f98e/ENCFF849ZVT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF392VLO fastq fastq reads ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 263050332 Michael Snyder, Stanford ea6cba77c4af192153a5e4285cd26f39 https://www.encodeproject.org/files/ENCFF392VLO/@@download/ENCFF392VLO.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/213bf65f-55ea-4cda-afd9-ae5ad9525a5d/ENCFF392VLO.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF305MMQ fastq fastq reads ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 153247476 Michael Snyder, Stanford 192090047313adfc991d72d78561c7d2 https://www.encodeproject.org/files/ENCFF305MMQ/@@download/ENCFF305MMQ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/24/5fd7a6f4-0ad7-4767-8730-0f932dc6ade7/ENCFF305MMQ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF126NGU bam bam alignments ce10 ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF305MMQ/, /files/ENCFF392VLO/, /files/ENCFF987UMF/ 554387694 Kevin White, UChicago 81616a54001f9043c6b5713e430dda2f https://www.encodeproject.org/files/ENCFF126NGU/@@download/ENCFF126NGU.bam released s3://encode-public/2017/04/27/edd9c8f3-f776-407f-a194-107a36df8210/ENCFF126NGU.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF640PUF bam bam alignments ce11 ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF305MMQ/, /files/ENCFF392VLO/, /files/ENCFF586MOL/ 554974390 Kevin White, UChicago b60fd2704bcc1aaf7432f0e2058dd37c https://www.encodeproject.org/files/ENCFF640PUF/@@download/ENCFF640PUF.bam released s3://encode-public/2017/04/27/ede82649-7e56-40f9-a588-de4c228f9197/ENCFF640PUF.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF358WRH bigWig bigWig read-depth normalized signal ce10 ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF126NGU/ 10021842 Kevin White, UChicago 4880f4506dec399365d2e5d687b43070 https://www.encodeproject.org/files/ENCFF358WRH/@@download/ENCFF358WRH.bigWig released s3://encode-public/2017/04/29/eda936be-1dac-4e99-be65-de9c9821c5dc/ENCFF358WRH.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF390WEO bigWig bigWig signal of unique reads ce10 ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF126NGU/ 9991414 Kevin White, UChicago 7c2c8291b9647da6a5daeba12d782de6 https://www.encodeproject.org/files/ENCFF390WEO/@@download/ENCFF390WEO.bigWig released s3://encode-public/2017/04/29/9faaf172-8dd6-494c-b45b-3650548526b9/ENCFF390WEO.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF365OIK bigWig bigWig signal of unique reads ce11 ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF640PUF/ 9988845 Kevin White, UChicago 44e744d430994592407bb51f7c61b3fe https://www.encodeproject.org/files/ENCFF365OIK/@@download/ENCFF365OIK.bigWig released s3://encode-public/2017/04/29/2f47aa32-4c7a-4230-870b-3cd8320b1d85/ENCFF365OIK.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF061YDD bigWig bigWig read-depth normalized signal ce11 ENCSR199VEK Control ChIP-seq /worm-donors/ENCDO767QYK/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/172711/'], '@type': ['Target', 'Item'], 'name': 'snpc-4-celegans', 'label': 'snpc-4', '@id': '/targets/snpc-4-celegans/', 'title': 'snpc-4 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': 'd21bdd56-8480-484e-ae2c-a6131e460aea', 'status': 'released'} DNA 2017-11-22 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF640PUF/ 10021690 Kevin White, UChicago a555516028b4a8aa158e33f0a6178b92 https://www.encodeproject.org/files/ENCFF061YDD/@@download/ENCFF061YDD.bigWig released s3://encode-public/2017/04/29/7f291a5e-101d-4766-b383-7352f2124c00/ENCFF061YDD.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF894SRK fastq fastq reads ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF716RVD/ 6913361008 Michael Snyder, Stanford 256baa80650d465bb1b2668e2612e379 SRA:SRR6212967 https://www.encodeproject.org/files/ENCFF894SRK/@@download/ENCFF894SRK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/28/a61a1725-2f0a-499d-88b6-bb5cd8c9ab8b/ENCFF894SRK.fastq.gz ENCFF716RVD fastq fastq reads ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF894SRK/ 5926577261 Michael Snyder, Stanford 60a9d9d1e828088086bd1bdd4cb1556a SRA:SRR6212967 https://www.encodeproject.org/files/ENCFF716RVD/@@download/ENCFF716RVD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/28/a51e8ff1-b3f7-46b3-b000-a701e848d1cb/ENCFF716RVD.fastq.gz ENCFF300ZLE fastq fastq reads ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 100 paired-ended 1 /files/ENCFF504IJP/ 4452226436 Michael Snyder, Stanford d97b40bef0280e7a13ed0c8d02996669 SRA:SRR6212968 https://www.encodeproject.org/files/ENCFF300ZLE/@@download/ENCFF300ZLE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/28/b9a3662f-6191-451d-b663-4f710f262c89/ENCFF300ZLE.fastq.gz ENCFF504IJP fastq fastq reads ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 100 paired-ended 2 /files/ENCFF300ZLE/ 5310060350 Michael Snyder, Stanford ce5fc7593afbed3830c8a891a97334ce SRA:SRR6212968 https://www.encodeproject.org/files/ENCFF504IJP/@@download/ENCFF504IJP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/28/aad89e0a-c5ec-4340-846d-075e82556298/ENCFF504IJP.fastq.gz ENCFF689RBR bam bam unfiltered alignments hg19 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF504IJP/, /files/ENCFF300ZLE/ 9643376927 ENCODE Processing Pipeline 96ff6d913fc62ec8f375bbcb167f5495 https://www.encodeproject.org/files/ENCFF689RBR/@@download/ENCFF689RBR.bam released s3://encode-public/2017/03/01/b41e379e-e6e4-442b-966a-dfb7d5c4f134/ENCFF689RBR.bam ENCODE3 hg19 archived ENCFF730FVX bam bam alignments hg19 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 101 /files/ENCFF807MUK/, /files/ENCFF504IJP/, /files/ENCFF300ZLE/ 6657192590 ENCODE Processing Pipeline a3c4c4c7e5953a1e2f1584d4e0d8058c https://www.encodeproject.org/files/ENCFF730FVX/@@download/ENCFF730FVX.bam released s3://encode-public/2017/03/01/206dccd6-47e3-4379-82d0-cc3ee50cc0ef/ENCFF730FVX.bam ENCODE3 hg19 archived ENCFF166YST bam bam unfiltered alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF504IJP/, /files/ENCFF300ZLE/ 9669434556 ENCODE Processing Pipeline ed7277633de70d52db7224614d3471d1 https://www.encodeproject.org/files/ENCFF166YST/@@download/ENCFF166YST.bam released s3://encode-public/2017/03/01/93e2feef-62ec-41b0-b4fa-9aab3305db6e/ENCFF166YST.bam ENCODE3 GRCh38 archived ENCFF614UMV bam bam alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 101 /files/ENCFF643CGH/, /files/ENCFF504IJP/, /files/ENCFF300ZLE/ 6669512028 ENCODE Processing Pipeline 36868de91de0447de13e642a8cf378db https://www.encodeproject.org/files/ENCFF614UMV/@@download/ENCFF614UMV.bam released s3://encode-public/2017/03/01/05e7cb9f-ae2b-4cdb-bd60-9b5a20251a0d/ENCFF614UMV.bam ENCODE3 GRCh38 archived ENCFF334RAN bam bam unfiltered alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF894SRK/, /files/ENCFF716RVD/ 12223355731 ENCODE Processing Pipeline 4c0e73441350356df2b7bd85d9936e3e https://www.encodeproject.org/files/ENCFF334RAN/@@download/ENCFF334RAN.bam released s3://encode-public/2017/03/01/150448a7-83d0-4c71-a5d2-a5e2c2478237/ENCFF334RAN.bam ENCODE3 GRCh38 archived ENCFF079NXD bam bam unfiltered alignments hg19 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF894SRK/, /files/ENCFF716RVD/ 12183511587 ENCODE Processing Pipeline 8d39431631de3828028b7d5f57651957 https://www.encodeproject.org/files/ENCFF079NXD/@@download/ENCFF079NXD.bam released s3://encode-public/2017/03/01/5437164b-1713-48db-80ce-9e114c49f618/ENCFF079NXD.bam ENCODE3 hg19 archived ENCFF662BTM bam bam alignments hg19 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 101 /files/ENCFF807MUK/, /files/ENCFF894SRK/, /files/ENCFF716RVD/ 8734367940 ENCODE Processing Pipeline 64eac571e836742b96503b656805cb4b https://www.encodeproject.org/files/ENCFF662BTM/@@download/ENCFF662BTM.bam released s3://encode-public/2017/03/01/a2648486-d4d7-4912-924f-bfb2b293e121/ENCFF662BTM.bam ENCODE3 hg19 archived ENCFF939LTT bam bam alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 101 /files/ENCFF643CGH/, /files/ENCFF894SRK/, /files/ENCFF716RVD/ 8750587536 ENCODE Processing Pipeline a4eb77d9cdef08e970602d97e797fc7b https://www.encodeproject.org/files/ENCFF939LTT/@@download/ENCFF939LTT.bam released s3://encode-public/2017/03/01/3cbb0b21-9fb8-4d27-beee-a342cc0518ec/ENCFF939LTT.bam ENCODE3 GRCh38 archived ENCFF238JYD bam bam unfiltered alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF716RVD/, /files/ENCFF894SRK/ 12224093069 ENCODE Processing Pipeline ad814d1cb34bab5b5e12568d71fbdeb1 https://www.encodeproject.org/files/ENCFF238JYD/@@download/ENCFF238JYD.bam released s3://encode-public/2020/06/02/0424c4ec-2990-441f-86c2-9bc6b1c4abbf/ENCFF238JYD.bam ENCODE4 v1.4.0 GRCh38 released ENCFF081XOE bam bam unfiltered alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF300ZLE/, /files/ENCFF504IJP/ 9668024908 ENCODE Processing Pipeline abe21d02ff9ce1ffb005e613fcffec8c https://www.encodeproject.org/files/ENCFF081XOE/@@download/ENCFF081XOE.bam released s3://encode-public/2020/06/02/a076701e-53df-4275-b403-0f61d975b323/ENCFF081XOE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF853WIO bam bam alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF716RVD/, /files/ENCFF894SRK/ 8910059581 ENCODE Processing Pipeline 189fef748da9292aad043d355ac9898e https://www.encodeproject.org/files/ENCFF853WIO/@@download/ENCFF853WIO.bam released s3://encode-public/2020/06/02/8dd9219e-718c-485a-997d-07156400fd00/ENCFF853WIO.bam ENCODE4 v1.4.0 GRCh38 released ENCFF242YRY bam bam alignments GRCh38 ENCSR248IFK Control ChIP-seq /human-donors/ENCDO000ADM/ EFO:0002323 RWPE1 cell line Homo sapiens DNA 2017-03-16 ENCODE 450-650 2 2_1 100 /files/ENCFF110MCL/, /files/ENCFF300ZLE/, /files/ENCFF504IJP/ 6805296067 ENCODE Processing Pipeline 2cc67197981d9cf83fea4fcfa6ac93a4 https://www.encodeproject.org/files/ENCFF242YRY/@@download/ENCFF242YRY.bam released s3://encode-public/2020/06/02/1f8a9fd4-19b5-4a73-863f-20e918c8b610/ENCFF242YRY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF892WGA fastq fastq reads ENCSR032KWU Control ChIP-seq /fly-donors/ENCDO326YUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39405/'], '@type': ['Target', 'Item'], 'name': 'CG4328-dmelanogaster', 'label': 'CG4328', '@id': '/targets/CG4328-dmelanogaster/', 'title': 'CG4328 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46309db9-b7bb-4626-b2ce-0b22b322a59d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 734107387 Kevin White, UChicago 4ea35868c44599b1a0639f1f42d0fac1 https://www.encodeproject.org/files/ENCFF892WGA/@@download/ENCFF892WGA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/845ecef8-dae9-4316-ac59-100c69854904/ENCFF892WGA.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF305MOU bam bam alignments dm3 ENCSR032KWU Control ChIP-seq /fly-donors/ENCDO326YUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39405/'], '@type': ['Target', 'Item'], 'name': 'CG4328-dmelanogaster', 'label': 'CG4328', '@id': '/targets/CG4328-dmelanogaster/', 'title': 'CG4328 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46309db9-b7bb-4626-b2ce-0b22b322a59d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF892WGA/ 986498052 Kevin White, UChicago 88c2d3c7cb64aa217b38700658e85301 https://www.encodeproject.org/files/ENCFF305MOU/@@download/ENCFF305MOU.bam released s3://encode-public/2017/09/12/581708d0-d844-424e-b546-efdbd6456e03/ENCFF305MOU.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF967IPQ bam bam alignments dm6 ENCSR032KWU Control ChIP-seq /fly-donors/ENCDO326YUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39405/'], '@type': ['Target', 'Item'], 'name': 'CG4328-dmelanogaster', 'label': 'CG4328', '@id': '/targets/CG4328-dmelanogaster/', 'title': 'CG4328 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46309db9-b7bb-4626-b2ce-0b22b322a59d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF892WGA/ 980141672 Kevin White, UChicago 8b372f105db6fb19b45bfc51b6d6ae0c https://www.encodeproject.org/files/ENCFF967IPQ/@@download/ENCFF967IPQ.bam released s3://encode-public/2017/09/13/269b7cfe-3bc2-4d5c-9ffe-e166ed96c435/ENCFF967IPQ.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF511HHD bigWig bigWig signal of unique reads dm3 ENCSR032KWU Control ChIP-seq /fly-donors/ENCDO326YUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39405/'], '@type': ['Target', 'Item'], 'name': 'CG4328-dmelanogaster', 'label': 'CG4328', '@id': '/targets/CG4328-dmelanogaster/', 'title': 'CG4328 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46309db9-b7bb-4626-b2ce-0b22b322a59d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF305MOU/ 15342532 Kevin White, UChicago e39d0f90d7a07bf89160cfa29bcee99a https://www.encodeproject.org/files/ENCFF511HHD/@@download/ENCFF511HHD.bigWig released s3://encode-public/2017/09/14/3241a527-5324-4d43-80da-d881cd4de3cf/ENCFF511HHD.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF842RMK bigWig bigWig read-depth normalized signal dm3 ENCSR032KWU Control ChIP-seq /fly-donors/ENCDO326YUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39405/'], '@type': ['Target', 'Item'], 'name': 'CG4328-dmelanogaster', 'label': 'CG4328', '@id': '/targets/CG4328-dmelanogaster/', 'title': 'CG4328 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46309db9-b7bb-4626-b2ce-0b22b322a59d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF305MOU/ 15346992 Kevin White, UChicago 43ee8e09dd1196e928bece2736e1dda8 https://www.encodeproject.org/files/ENCFF842RMK/@@download/ENCFF842RMK.bigWig released s3://encode-public/2017/09/14/b0adca46-6c6c-4189-ba4c-91c623dde808/ENCFF842RMK.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF622QZI bigWig bigWig read-depth normalized signal dm6 ENCSR032KWU Control ChIP-seq /fly-donors/ENCDO326YUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39405/'], '@type': ['Target', 'Item'], 'name': 'CG4328-dmelanogaster', 'label': 'CG4328', '@id': '/targets/CG4328-dmelanogaster/', 'title': 'CG4328 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46309db9-b7bb-4626-b2ce-0b22b322a59d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF967IPQ/ 17543199 Kevin White, UChicago d51d1150f6f62033460f84ebd9a266d8 https://www.encodeproject.org/files/ENCFF622QZI/@@download/ENCFF622QZI.bigWig released s3://encode-public/2017/09/14/8cc4dbda-4da8-4671-831c-436b289a949e/ENCFF622QZI.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF866WWL bigWig bigWig signal of unique reads dm6 ENCSR032KWU Control ChIP-seq /fly-donors/ENCDO326YUX/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/39405/'], '@type': ['Target', 'Item'], 'name': 'CG4328-dmelanogaster', 'label': 'CG4328', '@id': '/targets/CG4328-dmelanogaster/', 'title': 'CG4328 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '46309db9-b7bb-4626-b2ce-0b22b322a59d', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF967IPQ/ 17526496 Kevin White, UChicago ef3f5f790f870739bd4a8bb7a6dc1767 https://www.encodeproject.org/files/ENCFF866WWL/@@download/ENCFF866WWL.bigWig released s3://encode-public/2017/09/14/9edbe944-2118-4600-8bb4-d6b6d02c3df4/ENCFF866WWL.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF220SQB bam bam unfiltered alignments GRCh38 ENCSR411BTN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84872/'], '@type': ['Target', 'Item'], 'name': 'ZC3H10-human', 'label': 'ZC3H10', '@id': '/targets/ZC3H10-human/', 'title': 'ZC3H10 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '89f83217-8fb0-478a-96bd-f7fccf9aadae', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF139NMI/, /files/ENCFF938HAP/ 6431731313 ENCODE Processing Pipeline 9adb842355a0c7c4bb399ca10d50a237 https://www.encodeproject.org/files/ENCFF220SQB/@@download/ENCFF220SQB.bam released s3://encode-public/2020/04/20/4c653912-f0f3-4b29-a9de-4d8f547a642e/ENCFF220SQB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF120NLU bam bam alignments GRCh38 ENCSR411BTN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84872/'], '@type': ['Target', 'Item'], 'name': 'ZC3H10-human', 'label': 'ZC3H10', '@id': '/targets/ZC3H10-human/', 'title': 'ZC3H10 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '89f83217-8fb0-478a-96bd-f7fccf9aadae', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF139NMI/, /files/ENCFF938HAP/ 4719212678 ENCODE Processing Pipeline b64f34cdf1adeb03b018c9bbbfeea52c https://www.encodeproject.org/files/ENCFF120NLU/@@download/ENCFF120NLU.bam released s3://encode-public/2020/04/20/58e80fc1-5e6d-40db-999c-6829adf36a0d/ENCFF120NLU.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF139NMI fastq fastq reads ENCSR411BTN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84872/'], '@type': ['Target', 'Item'], 'name': 'ZC3H10-human', 'label': 'ZC3H10', '@id': '/targets/ZC3H10-human/', 'title': 'ZC3H10 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '89f83217-8fb0-478a-96bd-f7fccf9aadae', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF938HAP/ 3379399616 Michael Snyder, Stanford 0d9517b3ed5e91686a66607d92f242a5 SRA:SRR16811206 https://www.encodeproject.org/files/ENCFF139NMI/@@download/ENCFF139NMI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/13/1ab124e3-0b56-423d-9a7c-f4759fe14e12/ENCFF139NMI.fastq.gz mild to moderate bottlenecking ENCFF938HAP fastq fastq reads ENCSR411BTN Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/84872/'], '@type': ['Target', 'Item'], 'name': 'ZC3H10-human', 'label': 'ZC3H10', '@id': '/targets/ZC3H10-human/', 'title': 'ZC3H10 (Homo sapiens)', 'investigated_as': ['RNA binding protein'], 'uuid': '89f83217-8fb0-478a-96bd-f7fccf9aadae', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF139NMI/ 3636169521 Michael Snyder, Stanford ef62737063a4f12f970373906d98f529 SRA:SRR16811206 https://www.encodeproject.org/files/ENCFF938HAP/@@download/ENCFF938HAP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/13/24e6cd5e-7890-448f-81fe-3d83aa86c48b/ENCFF938HAP.fastq.gz mild to moderate bottlenecking ENCFF043XDE fastq fastq reads ENCSR291BKA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-665'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284323/'], '@type': ['Target', 'Item'], 'name': 'ZNF780A-human', 'label': 'ZNF780A', '@id': '/targets/ZNF780A-human/', 'title': 'ZNF780A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aa0cf6dd-515d-4b0e-a628-51ede8eb8025', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF014JOH/ 2358184239 Michael Snyder, Stanford e134b0c806169488eacd521ae80990de SRA:SRR14841518 https://www.encodeproject.org/files/ENCFF043XDE/@@download/ENCFF043XDE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/22/9b310fdc-e677-42e1-9ae7-448f7913904c/ENCFF043XDE.fastq.gz mild to moderate bottlenecking ENCFF014JOH fastq fastq reads ENCSR291BKA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-665'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284323/'], '@type': ['Target', 'Item'], 'name': 'ZNF780A-human', 'label': 'ZNF780A', '@id': '/targets/ZNF780A-human/', 'title': 'ZNF780A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aa0cf6dd-515d-4b0e-a628-51ede8eb8025', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF043XDE/ 2894470169 Michael Snyder, Stanford 8c4882d72426959901a1246fa12b8870 SRA:SRR14841518 https://www.encodeproject.org/files/ENCFF014JOH/@@download/ENCFF014JOH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/22/acb060f5-7481-4300-9fa9-f27162bbf542/ENCFF014JOH.fastq.gz mild to moderate bottlenecking ENCFF538AUV bam bam alignments GRCh38 ENCSR291BKA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-665'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284323/'], '@type': ['Target', 'Item'], 'name': 'ZNF780A-human', 'label': 'ZNF780A', '@id': '/targets/ZNF780A-human/', 'title': 'ZNF780A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aa0cf6dd-515d-4b0e-a628-51ede8eb8025', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF043XDE/, /files/ENCFF014JOH/ 3872825021 ENCODE Processing Pipeline 5ae131b3f7f56b6f9875aaaecd3c5e93 https://www.encodeproject.org/files/ENCFF538AUV/@@download/ENCFF538AUV.bam released s3://encode-public/2020/04/21/c4a982b9-febb-411a-b730-c2c2c20c5260/ENCFF538AUV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF162NTE bam bam unfiltered alignments GRCh38 ENCSR291BKA Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-665'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/284323/'], '@type': ['Target', 'Item'], 'name': 'ZNF780A-human', 'label': 'ZNF780A', '@id': '/targets/ZNF780A-human/', 'title': 'ZNF780A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'aa0cf6dd-515d-4b0e-a628-51ede8eb8025', 'status': 'released'} DNA 2021-05-18 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF043XDE/, /files/ENCFF014JOH/ 5145460898 ENCODE Processing Pipeline 8bffd416645acbb9f7fe8969731f5aec https://www.encodeproject.org/files/ENCFF162NTE/@@download/ENCFF162NTE.bam released s3://encode-public/2020/04/21/ebc106b4-538b-45e2-9e7c-f1d642987065/ENCFF162NTE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF697HKZ fastq fastq reads ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 2 2_1 32 single-ended 148314882 Michael Snyder, Stanford c472eddc0731192020772dd665c81231 https://www.encodeproject.org/files/ENCFF697HKZ/@@download/ENCFF697HKZ.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/ff8a29e4-67b5-46ec-93e0-a68eb21c1715/ENCFF697HKZ.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF645JTU fastq fastq reads ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1 1_1 32 single-ended 146961936 Michael Snyder, Stanford a3e7213d2a4b79a799b807ac5b2a6f14 https://www.encodeproject.org/files/ENCFF645JTU/@@download/ENCFF645JTU.fastq.gz Illumina Genome Analyzer IIx released s3://encode-public/2017/04/23/27fb06e9-6705-4f7f-a2c0-0cf7f798e4b9/ENCFF645JTU.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF662GKG bam bam alignments ce10 ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF645JTU/, /files/ENCFF697HKZ/, /files/ENCFF987UMF/ 386035104 Kevin White, UChicago 38c7cbff4f32237dd9c8b100c905e6c4 https://www.encodeproject.org/files/ENCFF662GKG/@@download/ENCFF662GKG.bam released s3://encode-public/2017/04/27/6bbd39ad-677c-4a75-b8b9-ba28fe6bba90/ENCFF662GKG.bam Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF989DZP bam bam alignments ce11 ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 32 /files/ENCFF645JTU/, /files/ENCFF697HKZ/, /files/ENCFF586MOL/ 386440959 Kevin White, UChicago 1437af9a78ac23aae01b2f374206fce2 https://www.encodeproject.org/files/ENCFF989DZP/@@download/ENCFF989DZP.bam released s3://encode-public/2017/04/27/eb019f80-688b-45f3-8d9b-f8a97ff1f9c8/ENCFF989DZP.bam Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF797FSD bigWig bigWig read-depth normalized signal ce10 ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF662GKG/ 9977923 Kevin White, UChicago c32ad15cbf76dd5c4a2f77dbd82ce7b3 https://www.encodeproject.org/files/ENCFF797FSD/@@download/ENCFF797FSD.bigWig released s3://encode-public/2017/04/29/72b735b7-8a05-448d-bc53-71eb0e73c30f/ENCFF797FSD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF151TJD bigWig bigWig signal of unique reads ce10 ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF662GKG/ 10045986 Kevin White, UChicago 090c2c0ef32275a1226265f81c7173ab https://www.encodeproject.org/files/ENCFF151TJD/@@download/ENCFF151TJD.bigWig released s3://encode-public/2017/04/29/7a259972-f173-4c61-a0c2-09f56dc0b830/ENCFF151TJD.bigWig Lab custom ce10 archived missing genetic modification characterization, missing biosample characterization ENCFF978ERO bigWig bigWig read-depth normalized signal ce11 ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF989DZP/ 9974619 Kevin White, UChicago 6791aa40ca0fd58dfe8e6ac6b41c753c https://www.encodeproject.org/files/ENCFF978ERO/@@download/ENCFF978ERO.bigWig released s3://encode-public/2017/04/29/02871282-53ba-495b-9ad7-b6d9f42307b0/ENCFF978ERO.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF033MUC bigWig bigWig signal of unique reads ce11 ENCSR334LDM Control ChIP-seq /worm-donors/ENCDO315PNT/ UBERON:0000468 whole organism whole organisms Caenorhabditis elegans insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'celegans', 'taxon_id': '6239', 'scientific_name': 'Caenorhabditis elegans', '@id': '/organisms/celegans/', 'uuid': '2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20', 'status': 'released'}, 'genes': ['/genes/179403/'], '@type': ['Target', 'Item'], 'name': 'nhr-12-celegans', 'label': 'nhr-12', '@id': '/targets/nhr-12-celegans/', 'title': 'nhr-12 (Caenorhabditis elegans)', 'investigated_as': ['transcription factor'], 'uuid': '051f87c8-fd5c-426f-880b-37106bebd92d', 'status': 'released'} DNA 2017-11-06 modENCODE sonication (generic microtip) 1, 2 1_1, 2_1 /files/ENCFF989DZP/ 10042687 Kevin White, UChicago ee1b02944e6c3bd7f9e9ddfbe08a68d4 https://www.encodeproject.org/files/ENCFF033MUC/@@download/ENCFF033MUC.bigWig released s3://encode-public/2017/04/29/e124f56f-ff16-4101-9de2-df4414a5003a/ENCFF033MUC.bigWig Lab custom ce11 released missing genetic modification characterization, missing biosample characterization ENCFF840BLK fastq fastq reads ENCSR922UWH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF798ZDX/ 2012412058 Michael Snyder, Stanford 0b3c3597e669d0b6478ab61d94d012aa SRA:SRR14847507 https://www.encodeproject.org/files/ENCFF840BLK/@@download/ENCFF840BLK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/d3d51a77-2005-4bf3-b449-a9fd05a9ef52/ENCFF840BLK.fastq.gz mild to moderate bottlenecking ENCFF798ZDX fastq fastq reads ENCSR922UWH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF840BLK/ 2229207632 Michael Snyder, Stanford eabbaf2461d8789b4ba67efb2b13c224 SRA:SRR14847507 https://www.encodeproject.org/files/ENCFF798ZDX/@@download/ENCFF798ZDX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/05/18/e95f6189-1f22-4a44-a738-65445be2dd5f/ENCFF798ZDX.fastq.gz mild to moderate bottlenecking ENCFF822YML bam bam alignments GRCh38 ENCSR922UWH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF840BLK/, /files/ENCFF798ZDX/ 3155762087 ENCODE Processing Pipeline aacd70a7cd0bda5678cff6e92a3a4485 https://www.encodeproject.org/files/ENCFF822YML/@@download/ENCFF822YML.bam released s3://encode-public/2020/06/24/c0109c80-d7c3-4176-9622-4be6c3b15919/ENCFF822YML.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF456HYH bam bam unfiltered alignments GRCh38 ENCSR922UWH Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF840BLK/, /files/ENCFF798ZDX/ 4251118624 ENCODE Processing Pipeline 94fea53bb6ab32db5a5481d32c30ce6f https://www.encodeproject.org/files/ENCFF456HYH/@@download/ENCFF456HYH.bam released s3://encode-public/2020/06/24/1cf90caf-c714-41a3-9e07-5cecd2c98d54/ENCFF456HYH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF576YZR fastq fastq reads ENCSR264BNK Control ChIP-seq /fly-donors/ENCDO163SPP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38144/'], '@type': ['Target', 'Item'], 'name': 'CG9139-dmelanogaster', 'label': 'CG9139', '@id': '/targets/CG9139-dmelanogaster/', 'title': 'CG9139 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a269609-7adb-41d6-9fac-c254f906e5c9', 'status': 'released'} dm3 3L 1286994 1312278 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 744999137 Kevin White, UChicago fde2fa32faed10a38627858964fd093e https://www.encodeproject.org/files/ENCFF576YZR/@@download/ENCFF576YZR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/4d72a036-1120-4674-9965-60c6699ab647/ENCFF576YZR.fastq.gz missing genetic modification characterization, missing biosample characterization ENCFF569VTB bam bam alignments dm3 ENCSR264BNK Control ChIP-seq /fly-donors/ENCDO163SPP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38144/'], '@type': ['Target', 'Item'], 'name': 'CG9139-dmelanogaster', 'label': 'CG9139', '@id': '/targets/CG9139-dmelanogaster/', 'title': 'CG9139 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a269609-7adb-41d6-9fac-c254f906e5c9', 'status': 'released'} dm3 3L 1286994 1312278 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF576YZR/ 999220923 Kevin White, UChicago f3860e9a24bb9180aeea3b1f3dde5320 https://www.encodeproject.org/files/ENCFF569VTB/@@download/ENCFF569VTB.bam released s3://encode-public/2017/09/12/759dc720-3425-46e0-99c7-4a4bb0171de0/ENCFF569VTB.bam Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF779OMR bam bam alignments dm6 ENCSR264BNK Control ChIP-seq /fly-donors/ENCDO163SPP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38144/'], '@type': ['Target', 'Item'], 'name': 'CG9139-dmelanogaster', 'label': 'CG9139', '@id': '/targets/CG9139-dmelanogaster/', 'title': 'CG9139 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a269609-7adb-41d6-9fac-c254f906e5c9', 'status': 'released'} dm3 3L 1286994 1312278 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF576YZR/ 991711618 Kevin White, UChicago ee510e5d32d2904598025d996256d8e0 https://www.encodeproject.org/files/ENCFF779OMR/@@download/ENCFF779OMR.bam released s3://encode-public/2017/09/13/bbd75da1-6e2a-43f8-9130-826be266d535/ENCFF779OMR.bam Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF010RGW bigWig bigWig signal of unique reads dm3 ENCSR264BNK Control ChIP-seq /fly-donors/ENCDO163SPP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38144/'], '@type': ['Target', 'Item'], 'name': 'CG9139-dmelanogaster', 'label': 'CG9139', '@id': '/targets/CG9139-dmelanogaster/', 'title': 'CG9139 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a269609-7adb-41d6-9fac-c254f906e5c9', 'status': 'released'} dm3 3L 1286994 1312278 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF569VTB/ 15361466 Kevin White, UChicago 8e5b5b789f9acd91149077a8aaca0ed9 https://www.encodeproject.org/files/ENCFF010RGW/@@download/ENCFF010RGW.bigWig released s3://encode-public/2017/09/13/8f6742e5-7b7f-4507-8dec-1d13c55a0139/ENCFF010RGW.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF122RKU bigWig bigWig read-depth normalized signal dm3 ENCSR264BNK Control ChIP-seq /fly-donors/ENCDO163SPP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38144/'], '@type': ['Target', 'Item'], 'name': 'CG9139-dmelanogaster', 'label': 'CG9139', '@id': '/targets/CG9139-dmelanogaster/', 'title': 'CG9139 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a269609-7adb-41d6-9fac-c254f906e5c9', 'status': 'released'} dm3 3L 1286994 1312278 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF569VTB/ 15371886 Kevin White, UChicago 6637741d8580c42465ba1907f5444741 https://www.encodeproject.org/files/ENCFF122RKU/@@download/ENCFF122RKU.bigWig released s3://encode-public/2017/09/13/e41c3252-660a-4b98-b9f6-36b959a2e808/ENCFF122RKU.bigWig Lab custom dm3 archived missing genetic modification characterization, missing biosample characterization ENCFF251NWI bigWig bigWig signal of unique reads dm6 ENCSR264BNK Control ChIP-seq /fly-donors/ENCDO163SPP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38144/'], '@type': ['Target', 'Item'], 'name': 'CG9139-dmelanogaster', 'label': 'CG9139', '@id': '/targets/CG9139-dmelanogaster/', 'title': 'CG9139 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a269609-7adb-41d6-9fac-c254f906e5c9', 'status': 'released'} dm3 3L 1286994 1312278 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF779OMR/ 17546624 Kevin White, UChicago 06c521328d8ec46a222ca3ac2b0f4355 https://www.encodeproject.org/files/ENCFF251NWI/@@download/ENCFF251NWI.bigWig released s3://encode-public/2017/09/14/79261eb0-6ea0-44fc-9f2c-30bedeac73e6/ENCFF251NWI.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF754EES bigWig bigWig read-depth normalized signal dm6 ENCSR264BNK Control ChIP-seq /fly-donors/ENCDO163SPP/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/38144/'], '@type': ['Target', 'Item'], 'name': 'CG9139-dmelanogaster', 'label': 'CG9139', '@id': '/targets/CG9139-dmelanogaster/', 'title': 'CG9139 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '0a269609-7adb-41d6-9fac-c254f906e5c9', 'status': 'released'} dm3 3L 1286994 1312278 DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF779OMR/ 17561734 Kevin White, UChicago 5f5d0049f51a11f5ca191dfe54e640dc https://www.encodeproject.org/files/ENCFF754EES/@@download/ENCFF754EES.bigWig released s3://encode-public/2017/09/14/4c0fdb28-db9b-4ee1-8ff8-c63cab50233a/ENCFF754EES.bigWig Lab custom dm6 released missing genetic modification characterization, missing biosample characterization ENCFF068IBX fastq fastq reads ENCSR411JGG Control ChIP-seq /fly-donors/ENCDO735VFB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41244/'], '@type': ['Target', 'Item'], 'name': 'CG6254-dmelanogaster', 'label': 'CG6254', '@id': '/targets/CG6254-dmelanogaster/', 'title': 'CG6254 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e525b9d-169b-4ec2-949a-881818fa0626', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 784683591 Kevin White, UChicago ee33ccb019e9b3aa4091e665f42cb728 https://www.encodeproject.org/files/ENCFF068IBX/@@download/ENCFF068IBX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/3e1f2617-46e2-4eb1-9576-a187ed2a528f/ENCFF068IBX.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF255NMD bam bam alignments dm3 ENCSR411JGG Control ChIP-seq /fly-donors/ENCDO735VFB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41244/'], '@type': ['Target', 'Item'], 'name': 'CG6254-dmelanogaster', 'label': 'CG6254', '@id': '/targets/CG6254-dmelanogaster/', 'title': 'CG6254 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e525b9d-169b-4ec2-949a-881818fa0626', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF068IBX/ 1065517334 Kevin White, UChicago 9ec352f6d7415256027e256e5f601497 https://www.encodeproject.org/files/ENCFF255NMD/@@download/ENCFF255NMD.bam released s3://encode-public/2017/09/12/74bdff88-4c80-4491-860d-076d7b1f7e42/ENCFF255NMD.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF573BNZ bam bam alignments dm6 ENCSR411JGG Control ChIP-seq /fly-donors/ENCDO735VFB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41244/'], '@type': ['Target', 'Item'], 'name': 'CG6254-dmelanogaster', 'label': 'CG6254', '@id': '/targets/CG6254-dmelanogaster/', 'title': 'CG6254 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e525b9d-169b-4ec2-949a-881818fa0626', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF068IBX/ 1053796532 Kevin White, UChicago 4f753043844e742b0f0778436e455a07 https://www.encodeproject.org/files/ENCFF573BNZ/@@download/ENCFF573BNZ.bam released s3://encode-public/2017/09/13/4e9c4a3d-88bb-4fde-adec-8e7731b91278/ENCFF573BNZ.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF495WHD bigWig bigWig signal of unique reads dm3 ENCSR411JGG Control ChIP-seq /fly-donors/ENCDO735VFB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41244/'], '@type': ['Target', 'Item'], 'name': 'CG6254-dmelanogaster', 'label': 'CG6254', '@id': '/targets/CG6254-dmelanogaster/', 'title': 'CG6254 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e525b9d-169b-4ec2-949a-881818fa0626', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF255NMD/ 15402036 Kevin White, UChicago 1022f49ca6de1a3edc11c7413509d6a1 https://www.encodeproject.org/files/ENCFF495WHD/@@download/ENCFF495WHD.bigWig released s3://encode-public/2017/09/13/9ff13e60-797a-4ef2-a627-889a00afe35b/ENCFF495WHD.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF857TLJ bigWig bigWig read-depth normalized signal dm3 ENCSR411JGG Control ChIP-seq /fly-donors/ENCDO735VFB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41244/'], '@type': ['Target', 'Item'], 'name': 'CG6254-dmelanogaster', 'label': 'CG6254', '@id': '/targets/CG6254-dmelanogaster/', 'title': 'CG6254 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e525b9d-169b-4ec2-949a-881818fa0626', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF255NMD/ 15420750 Kevin White, UChicago 97675efaf419f9ea1dbd00c47f2014c5 https://www.encodeproject.org/files/ENCFF857TLJ/@@download/ENCFF857TLJ.bigWig released s3://encode-public/2017/09/13/73435712-ea9a-431c-bf9b-8c074f522f3f/ENCFF857TLJ.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF233FXV bigWig bigWig signal of unique reads dm6 ENCSR411JGG Control ChIP-seq /fly-donors/ENCDO735VFB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41244/'], '@type': ['Target', 'Item'], 'name': 'CG6254-dmelanogaster', 'label': 'CG6254', '@id': '/targets/CG6254-dmelanogaster/', 'title': 'CG6254 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e525b9d-169b-4ec2-949a-881818fa0626', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF573BNZ/ 17620997 Kevin White, UChicago aa510ffc31a642336466524b7df584cc https://www.encodeproject.org/files/ENCFF233FXV/@@download/ENCFF233FXV.bigWig released s3://encode-public/2017/09/14/da5866b4-aa81-4099-8285-bdf9a3c9d4a3/ENCFF233FXV.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF710VWG bigWig bigWig read-depth normalized signal dm6 ENCSR411JGG Control ChIP-seq /fly-donors/ENCDO735VFB/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/41244/'], '@type': ['Target', 'Item'], 'name': 'CG6254-dmelanogaster', 'label': 'CG6254', '@id': '/targets/CG6254-dmelanogaster/', 'title': 'CG6254 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '4e525b9d-169b-4ec2-949a-881818fa0626', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF573BNZ/ 17640858 Kevin White, UChicago ff1366b38104852c593c0db7aa2f7b32 https://www.encodeproject.org/files/ENCFF710VWG/@@download/ENCFF710VWG.bigWig released s3://encode-public/2017/09/14/0d13e7f2-6ab0-4c15-82bc-880d70c0535e/ENCFF710VWG.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF657YFW fastq fastq reads ENCSR969KWE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF248XHP/ 3308051904 Michael Snyder, Stanford 64a90ed6a4b533bd2cf9689fdeec6e37 SRA:SRR14107466 https://www.encodeproject.org/files/ENCFF657YFW/@@download/ENCFF657YFW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/24/e5a05a99-2a1d-4d50-a0dc-045644bd59fe/ENCFF657YFW.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF248XHP fastq fastq reads ENCSR969KWE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF657YFW/ 3632123477 Michael Snyder, Stanford c56f461a5d037fa6f147e74f996f6931 SRA:SRR14107466 https://www.encodeproject.org/files/ENCFF248XHP/@@download/ENCFF248XHP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/04/24/89158783-b077-47d5-94fc-f429b59a7612/ENCFF248XHP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF784KOB bam bam unfiltered alignments GRCh38 ENCSR969KWE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF657YFW/, /files/ENCFF248XHP/ 6664056676 ENCODE Processing Pipeline d8a7b97fa98040be9c4215316bd68e54 https://www.encodeproject.org/files/ENCFF784KOB/@@download/ENCFF784KOB.bam released s3://encode-public/2020/05/11/bcf7a768-7343-43f6-ab13-509b27776260/ENCFF784KOB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF859HIP bam bam alignments GRCh38 ENCSR969KWE Control ChIP-seq /human-donors/ENCDO000AAZ/ EFO:0001086 A549 cell line Homo sapiens DNA 2020-06-30 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF657YFW/, /files/ENCFF248XHP/ 4036650501 ENCODE Processing Pipeline a75a75e8a25296ba8b0b99e9a0ba7496 https://www.encodeproject.org/files/ENCFF859HIP/@@download/ENCFF859HIP.bam released s3://encode-public/2020/05/11/5dbb9558-7669-45bb-89fb-d30842cb1b72/ENCFF859HIP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF345KWS fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 418833921 Bradley Bernstein, Broad e24d142bbffd3b6f8c401a84692ef3dc SRA:SRR14106926 https://www.encodeproject.org/files/ENCFF345KWS/@@download/ENCFF345KWS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6486e74b-020b-4cea-a0a3-31dab403c186/ENCFF345KWS.fastq.gz ENCFF091ARC fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 399785271 Bradley Bernstein, Broad 47a5436956bed5f5cb6772a50d380e0b SRA:SRR14106927 https://www.encodeproject.org/files/ENCFF091ARC/@@download/ENCFF091ARC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/6b236229-5492-4098-9287-613f3b289da5/ENCFF091ARC.fastq.gz ENCFF746TWB fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 408268769 Bradley Bernstein, Broad 058319feede1ab2b317f9d12d45ebe21 SRA:SRR14106928 https://www.encodeproject.org/files/ENCFF746TWB/@@download/ENCFF746TWB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9999a0c9-759e-4c38-95f4-d83335633cc1/ENCFF746TWB.fastq.gz ENCFF412KBD fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 534887246 Bradley Bernstein, Broad a75ac9e06a13c1633c1c586bd9c1603b SRA:SRR14106922 https://www.encodeproject.org/files/ENCFF412KBD/@@download/ENCFF412KBD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/e0188429-3b83-4ad7-9c90-e30555bc5999/ENCFF412KBD.fastq.gz ENCFF159PKQ fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 358904476 Bradley Bernstein, Broad 04c45a7f96d056b9805355010e118946 SRA:SRR14106930 https://www.encodeproject.org/files/ENCFF159PKQ/@@download/ENCFF159PKQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/2dc7fe22-3436-480d-b439-a2b5c3af396f/ENCFF159PKQ.fastq.gz ENCFF412IJJ fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 533431556 Bradley Bernstein, Broad 1804c567fdf893cc4747e79e9fe3a188 SRA:SRR14106923 https://www.encodeproject.org/files/ENCFF412IJJ/@@download/ENCFF412IJJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/4269cd1c-2f10-4307-982d-fb18a0224ef5/ENCFF412IJJ.fastq.gz ENCFF997IIQ fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1 76 single-ended 412725483 Bradley Bernstein, Broad ac0b81b529c738f030b842e23975d96c SRA:SRR14106929 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https://www.encodeproject.org/files/ENCFF931FWY/@@download/ENCFF931FWY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/c1f61e44-decb-457e-846d-a59ba5666b7d/ENCFF931FWY.fastq.gz ENCFF372KGA fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_2 76 single-ended 361604336 Bradley Bernstein, Broad 4617bf44bfd06dd8bec860813807735f SRA:SRR14106933 https://www.encodeproject.org/files/ENCFF372KGA/@@download/ENCFF372KGA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/3257d5b3-723c-4881-b4dc-d69cda9fb5fc/ENCFF372KGA.fastq.gz ENCFF561SQP fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 531238745 Bradley Bernstein, Broad 9584624aab6794f2699a87a4db4c3779 SRA:SRR14106924 https://www.encodeproject.org/files/ENCFF561SQP/@@download/ENCFF561SQP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/806dc459-aefb-4913-8714-70c2848cc6a9/ENCFF561SQP.fastq.gz ENCFF415MCQ fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1 76 single-ended 528347007 Bradley Bernstein, Broad 58f8357be62e180f74b0ef43b3bf4350 SRA:SRR14106925 https://www.encodeproject.org/files/ENCFF415MCQ/@@download/ENCFF415MCQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/8772decd-0d01-4841-9576-daf139c7ec19/ENCFF415MCQ.fastq.gz ENCFF852SCS fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 369530367 Bradley Bernstein, Broad df64b8b14da79cc83b6804d3bd247f86 SRA:SRR14106918 https://www.encodeproject.org/files/ENCFF852SCS/@@download/ENCFF852SCS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/185f2800-e1de-4fcb-ba36-4d9db8279a44/ENCFF852SCS.fastq.gz ENCFF312SKQ fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 363733217 Bradley Bernstein, Broad 566772c6115c829c8373d41943efa7ac SRA:SRR14106919 https://www.encodeproject.org/files/ENCFF312SKQ/@@download/ENCFF312SKQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/26483bf9-358b-4e31-af90-27cad7a89636/ENCFF312SKQ.fastq.gz ENCFF039IVR fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 360862035 Bradley Bernstein, Broad 5c4be7b794268f0bb146b49a060c23dd SRA:SRR14106920 https://www.encodeproject.org/files/ENCFF039IVR/@@download/ENCFF039IVR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/9f388168-6643-4b28-ae46-cc954d570990/ENCFF039IVR.fastq.gz ENCFF394AAV fastq fastq reads ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_2 76 single-ended 358620589 Bradley Bernstein, Broad 63f7786277b42dc917cbcde7e1a0efe2 SRA:SRR14106921 https://www.encodeproject.org/files/ENCFF394AAV/@@download/ENCFF394AAV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2020/05/01/a214a232-3f04-4821-ad3e-722e7c16af04/ENCFF394AAV.fastq.gz ENCFF110QON bam bam alignments GRCh38 ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF372KGA/, /files/ENCFF997IIQ/, /files/ENCFF110MCL/, /files/ENCFF959AAR/, /files/ENCFF345KWS/, /files/ENCFF931FWY/, /files/ENCFF159PKQ/, 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GRCh38 ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF412IJJ/, /files/ENCFF412KBD/, /files/ENCFF415MCQ/, /files/ENCFF394AAV/, /files/ENCFF561SQP/, /files/ENCFF110MCL/, /files/ENCFF039IVR/, /files/ENCFF852SCS/, /files/ENCFF312SKQ/ 3543604826 ENCODE Processing Pipeline 7023223f1d07d6701a77e21d27ef2fd7 https://www.encodeproject.org/files/ENCFF134DTA/@@download/ENCFF134DTA.bam released s3://encode-public/2020/06/14/291efe1f-712b-465f-b84f-70a809ca3a9a/ENCFF134DTA.bam ENCODE4 v1.4.0 GRCh38 released ENCFF851CAG bam bam alignments GRCh38 ENCSR553CWR Control ChIP-seq /human-donors/ENCDO222AAA/ UBERON:0000955 brain organoid Homo sapiens DNA 2020-07-06 ENCODE 200-600 2 2_1, 2_2 76 /files/ENCFF412IJJ/, /files/ENCFF412KBD/, /files/ENCFF415MCQ/, /files/ENCFF394AAV/, /files/ENCFF561SQP/, /files/ENCFF110MCL/, /files/ENCFF039IVR/, /files/ENCFF852SCS/, /files/ENCFF312SKQ/ 3036664225 ENCODE Processing Pipeline cf30b1d83d83d56465ac0be45f053e35 https://www.encodeproject.org/files/ENCFF851CAG/@@download/ENCFF851CAG.bam released s3://encode-public/2020/06/14/bfa53a0a-ae0b-4293-899d-72d5ccdb30b3/ENCFF851CAG.bam ENCODE4 v1.4.0 GRCh38 released ENCFF622MZI fastq fastq reads ENCSR354HOM Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 3909069539 Roderic Guigo, CRG 1b6b1962f07d2ff2c902a3046b05fae6 https://www.encodeproject.org/files/ENCFF622MZI/@@download/ENCFF622MZI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/e89f4950-a269-4b93-9f90-424698da183e/ENCFF622MZI.fastq.gz ENCFF259JCU fastq fastq reads ENCSR354HOM Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 4506049076 Roderic Guigo, CRG 066a17edd9194f64eb8d6ce0969d1e26 https://www.encodeproject.org/files/ENCFF259JCU/@@download/ENCFF259JCU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/0f5cce95-0d18-413b-853b-00102fc120d8/ENCFF259JCU.fastq.gz ENCFF476KDC bam bam alignments GRCh38 ENCSR354HOM Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF259JCU/ 4433926959 Roderic Guigo, CRG 20a7a866c5c43d1a92dcf7cbd866f783 https://www.encodeproject.org/files/ENCFF476KDC/@@download/ENCFF476KDC.bam released s3://encode-public/2022/01/27/0c8dea8d-d41b-4805-9980-d94b07084dd3/ENCFF476KDC.bam Lab custom GRCh38 released ENCFF256IZO bam bam alignments GRCh38 ENCSR354HOM Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF622MZI/ 4309784820 Roderic Guigo, CRG b7a562dba7e32a0d12ea03ecc913d940 https://www.encodeproject.org/files/ENCFF256IZO/@@download/ENCFF256IZO.bam released s3://encode-public/2022/01/27/7e66e49f-7c52-47db-ad7d-9a075a6c68c7/ENCFF256IZO.bam Lab custom GRCh38 released ENCFF428ERJ fastq fastq reads ENCSR399JUL Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 4003670130 Roderic Guigo, CRG 6455128fad184e908b22a181bcd1d899 https://www.encodeproject.org/files/ENCFF428ERJ/@@download/ENCFF428ERJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/81585be3-af3c-4494-ab05-e248feae97ff/ENCFF428ERJ.fastq.gz ENCFF492ETS fastq fastq reads ENCSR399JUL Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 4376706182 Roderic Guigo, CRG 377072224bce1b177cf1fd9c628d8dae https://www.encodeproject.org/files/ENCFF492ETS/@@download/ENCFF492ETS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/44c045eb-4407-4bd5-9323-30e7daa83dcd/ENCFF492ETS.fastq.gz ENCFF144ZRD bam bam alignments GRCh38 ENCSR399JUL Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF428ERJ/ 3867875528 Roderic Guigo, CRG 2ed0c0cbbece691aa0f3e58603da4e17 https://www.encodeproject.org/files/ENCFF144ZRD/@@download/ENCFF144ZRD.bam released s3://encode-public/2022/01/27/07b34ca6-e457-4872-9d41-9da7cc616061/ENCFF144ZRD.bam Lab custom GRCh38 released ENCFF026VHE bam bam alignments GRCh38 ENCSR399JUL Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF492ETS/ 4787659819 Roderic Guigo, CRG b50351f9c912e78ecc0585d00945fd0e https://www.encodeproject.org/files/ENCFF026VHE/@@download/ENCFF026VHE.bam released s3://encode-public/2022/01/27/8ef5e0ba-8e9c-46e8-8a4b-37fb60e043af/ENCFF026VHE.bam Lab custom GRCh38 released ENCFF226VKX fastq fastq reads ENCSR566AUD Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 51 single-ended 5188688090 Roderic Guigo, CRG e09aaa0d96b28b5114e3a46720cbfb8f https://www.encodeproject.org/files/ENCFF226VKX/@@download/ENCFF226VKX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/1af1fb5b-e7bf-4cbf-9ca6-8abd7c3534bb/ENCFF226VKX.fastq.gz ENCFF817OFD fastq fastq reads ENCSR566AUD Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 51 single-ended 3957687364 Roderic Guigo, CRG c3ba9a38c48a3528577f3af30828351c https://www.encodeproject.org/files/ENCFF817OFD/@@download/ENCFF817OFD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2022/01/27/875eed57-90cb-4a95-b7c1-4650504cf38f/ENCFF817OFD.fastq.gz ENCFF569XTI bam bam alignments GRCh38 ENCSR566AUD Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 2 2_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF817OFD/ 4348484787 Roderic Guigo, CRG 64c0d5bad3083e240b93de2b8523dae7 https://www.encodeproject.org/files/ENCFF569XTI/@@download/ENCFF569XTI.bam released s3://encode-public/2022/01/27/432a028e-e75e-499b-90f1-e4b8cc28371b/ENCFF569XTI.bam Lab custom GRCh38 released ENCFF346YPE bam bam alignments GRCh38 ENCSR566AUD Control ChIP-seq /human-donors/ENCDO305PTK/ EFO:0030018 BLaER1 cell line Homo sapiens CSF1, Interleukin-3, 17β-estradiol 10 nM, 100 nM DNA formaldehyde 2022-05-10 community shearing (Covaris generic) 1 1_1 50 /files/GRCh38_no_alt_analysis_set_GCA_000001405.15/, /files/ENCFF226VKX/ 5188700395 Roderic Guigo, CRG 4de5cacdf50723954cbc870e9d12d74f https://www.encodeproject.org/files/ENCFF346YPE/@@download/ENCFF346YPE.bam released s3://encode-public/2022/01/27/1fc88c87-5b8b-4319-a3e3-311794179672/ENCFF346YPE.bam Lab custom GRCh38 released ENCFF898MQI fastq fastq reads ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_2 76 single-ended 1004450340 Bradley Bernstein, Broad 98e0fe1752d1d41b126d5636c1c74851 SRA:SRR10837806 https://www.encodeproject.org/files/ENCFF898MQI/@@download/ENCFF898MQI.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/26d234c9-98c8-4540-91c8-bb9ac2a53b76/ENCFF898MQI.fastq.gz ENCFF759PNS fastq fastq reads ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_2 76 single-ended 1012737338 Bradley Bernstein, Broad fb68cdc4becd69916fef0925ce067b76 SRA:SRR10837807 https://www.encodeproject.org/files/ENCFF759PNS/@@download/ENCFF759PNS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2019/01/28/baab7c43-96c9-4a39-86cb-cf5e499853d8/ENCFF759PNS.fastq.gz ENCFF266UXT bam bam unfiltered alignments hg19 ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF759PNS/, /files/ENCFF116ZVM/, /files/ENCFF807MUK/, /files/ENCFF519MHN/, /files/ENCFF898MQI/ 4870928066 ENCODE Processing Pipeline 913d8068fbe8237a3ff63bd5375aa42e https://www.encodeproject.org/files/ENCFF266UXT/@@download/ENCFF266UXT.bam released s3://encode-public/2019/02/08/1877e0fc-aad0-4bff-a604-fe3710ec5e8a/ENCFF266UXT.bam ENCODE3 hg19 archived ENCFF237JOZ bam bam unfiltered alignments GRCh38 ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF759PNS/, /files/ENCFF116ZVM/, /files/ENCFF519MHN/, /files/ENCFF643CGH/, /files/ENCFF898MQI/ 4882550263 ENCODE Processing Pipeline 4b5088e2ba40f40e8e09914980382012 https://www.encodeproject.org/files/ENCFF237JOZ/@@download/ENCFF237JOZ.bam released s3://encode-public/2019/02/08/3d22673c-6257-4f61-9549-afb255252394/ENCFF237JOZ.bam ENCODE3 GRCh38 archived ENCFF273ZUU bam bam alignments hg19 ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF759PNS/, /files/ENCFF116ZVM/, /files/ENCFF807MUK/, /files/ENCFF519MHN/, /files/ENCFF898MQI/ 4131458058 ENCODE Processing Pipeline 221ace44995001ea85f42a7d202ddfa7 https://www.encodeproject.org/files/ENCFF273ZUU/@@download/ENCFF273ZUU.bam released s3://encode-public/2019/02/08/5201f6aa-e520-40aa-ac73-aa40d7ec5c72/ENCFF273ZUU.bam ENCODE3 hg19 archived ENCFF388CEW bam bam alignments GRCh38 ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF759PNS/, /files/ENCFF116ZVM/, /files/ENCFF519MHN/, /files/ENCFF643CGH/, /files/ENCFF898MQI/ 4136111167 ENCODE Processing Pipeline d32779b13ae5e1de0009de9ad61c585c https://www.encodeproject.org/files/ENCFF388CEW/@@download/ENCFF388CEW.bam released s3://encode-public/2019/02/08/c97afbc0-b0c3-4777-b40a-5724ef0e8331/ENCFF388CEW.bam ENCODE3 GRCh38 archived ENCFF519MHN fastq fastq reads ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1665282945 Bradley Bernstein, Broad 0dba39cfca126e8373d2933d56ab2ad9 SRA:SRR10837804 https://www.encodeproject.org/files/ENCFF519MHN/@@download/ENCFF519MHN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/f8a69a58-ff75-4bb3-a18d-020a2b9cd736/ENCFF519MHN.fastq.gz ENCFF116ZVM fastq fastq reads ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1 76 single-ended 1681939804 Bradley Bernstein, Broad fdede4636e061611fb1fb5dff16d544f SRA:SRR10837805 https://www.encodeproject.org/files/ENCFF116ZVM/@@download/ENCFF116ZVM.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2017/07/28/4f699398-4732-4126-9bc1-8592cd8e4f79/ENCFF116ZVM.fastq.gz ENCFF431WRG bam bam unfiltered alignments GRCh38 ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF116ZVM/, /files/ENCFF519MHN/, /files/ENCFF110MCL/, /files/ENCFF898MQI/, /files/ENCFF759PNS/ 4929562060 ENCODE Processing Pipeline 798391d385b9ae0081757033f8086389 https://www.encodeproject.org/files/ENCFF431WRG/@@download/ENCFF431WRG.bam released s3://encode-public/2020/09/20/712996e3-8946-4827-be1c-fa456992677e/ENCFF431WRG.bam ENCODE4 v1.5.1 GRCh38 released ENCFF044TOH bam bam alignments GRCh38 ENCSR347VUG Control ChIP-seq /human-donors/ENCDO271OUW/ UBERON:0002046 thyroid gland tissue Homo sapiens DNA 2017-08-28 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF116ZVM/, /files/ENCFF519MHN/, /files/ENCFF110MCL/, /files/ENCFF898MQI/, /files/ENCFF759PNS/ 4219053147 ENCODE Processing Pipeline c47dc235cf9fec1fa25833e704b2c4e4 https://www.encodeproject.org/files/ENCFF044TOH/@@download/ENCFF044TOH.bam released s3://encode-public/2020/09/20/2df3dde9-8863-462f-88c2-217f5d4c2405/ENCFF044TOH.bam ENCODE4 v1.5.1 GRCh38 released ENCFF546TRY fastq fastq reads ENCSR655VMI Control ChIP-seq /fly-donors/ENCDO855ZCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31470/'], '@type': ['Target', 'Item'], 'name': 'Vsx1-dmelanogaster', 'label': 'Vsx1', '@id': '/targets/Vsx1-dmelanogaster/', 'title': 'Vsx1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c60cae-14c3-46f4-a9c4-9dfcacd4ebd5', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 single-ended 837727949 Kevin White, UChicago 480dec2ffc1ee135b492d9f0eca5b04e https://www.encodeproject.org/files/ENCFF546TRY/@@download/ENCFF546TRY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/09/11/335fdd57-4cbd-47d2-83ba-3ac7f0efa47e/ENCFF546TRY.fastq.gz missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF853ESH bam bam alignments dm3 ENCSR655VMI Control ChIP-seq /fly-donors/ENCDO855ZCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31470/'], '@type': ['Target', 'Item'], 'name': 'Vsx1-dmelanogaster', 'label': 'Vsx1', '@id': '/targets/Vsx1-dmelanogaster/', 'title': 'Vsx1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c60cae-14c3-46f4-a9c4-9dfcacd4ebd5', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF059UHX/, /files/ENCFF546TRY/ 1129089609 Kevin White, UChicago 2c63ae3be56433a675e3a8a9eca6f823 https://www.encodeproject.org/files/ENCFF853ESH/@@download/ENCFF853ESH.bam released s3://encode-public/2017/09/12/9ba7ed54-2906-4654-a72b-6bbd78a75558/ENCFF853ESH.bam Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF137QHL bam bam alignments dm6 ENCSR655VMI Control ChIP-seq /fly-donors/ENCDO855ZCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31470/'], '@type': ['Target', 'Item'], 'name': 'Vsx1-dmelanogaster', 'label': 'Vsx1', '@id': '/targets/Vsx1-dmelanogaster/', 'title': 'Vsx1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c60cae-14c3-46f4-a9c4-9dfcacd4ebd5', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 50 /files/ENCFF479RCH/, /files/ENCFF546TRY/ 1125210606 Kevin White, UChicago 4640b2149fc00418b8357c58125b9848 https://www.encodeproject.org/files/ENCFF137QHL/@@download/ENCFF137QHL.bam released s3://encode-public/2017/09/13/ff411dad-065a-43d4-a4e2-fc3ff76fd566/ENCFF137QHL.bam Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF961XNA bigWig bigWig signal of unique reads dm3 ENCSR655VMI Control ChIP-seq /fly-donors/ENCDO855ZCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31470/'], '@type': ['Target', 'Item'], 'name': 'Vsx1-dmelanogaster', 'label': 'Vsx1', '@id': '/targets/Vsx1-dmelanogaster/', 'title': 'Vsx1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c60cae-14c3-46f4-a9c4-9dfcacd4ebd5', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF853ESH/ 15447819 Kevin White, UChicago 2d4198708f0d88ae0d67c1f8c3f49dc8 https://www.encodeproject.org/files/ENCFF961XNA/@@download/ENCFF961XNA.bigWig released s3://encode-public/2017/09/14/139e485b-2f6a-4a8b-9532-af783048c138/ENCFF961XNA.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF473ROK bigWig bigWig read-depth normalized signal dm3 ENCSR655VMI Control ChIP-seq /fly-donors/ENCDO855ZCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31470/'], '@type': ['Target', 'Item'], 'name': 'Vsx1-dmelanogaster', 'label': 'Vsx1', '@id': '/targets/Vsx1-dmelanogaster/', 'title': 'Vsx1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c60cae-14c3-46f4-a9c4-9dfcacd4ebd5', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF853ESH/ 15472188 Kevin White, UChicago d3b374b57833879355736ec817535481 https://www.encodeproject.org/files/ENCFF473ROK/@@download/ENCFF473ROK.bigWig released s3://encode-public/2017/09/14/fbdad04e-b4c4-46b6-81fa-4b031f29891e/ENCFF473ROK.bigWig Lab custom dm3 archived missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF764GLR bigWig bigWig signal of unique reads dm6 ENCSR655VMI Control ChIP-seq /fly-donors/ENCDO855ZCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31470/'], '@type': ['Target', 'Item'], 'name': 'Vsx1-dmelanogaster', 'label': 'Vsx1', '@id': '/targets/Vsx1-dmelanogaster/', 'title': 'Vsx1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c60cae-14c3-46f4-a9c4-9dfcacd4ebd5', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF137QHL/ 17652759 Kevin White, UChicago d3b39af673e4b3405d8e5901e1457ae3 https://www.encodeproject.org/files/ENCFF764GLR/@@download/ENCFF764GLR.bigWig released s3://encode-public/2017/09/18/f515cd81-6922-4935-8f2a-76f3b418b45d/ENCFF764GLR.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF214WPA bigWig bigWig read-depth normalized signal dm6 ENCSR655VMI Control ChIP-seq /fly-donors/ENCDO855ZCS/ UBERON:0000468 whole organism whole organisms Drosophila melanogaster site-specific recombination insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'dmelanogaster', 'taxon_id': '7227', 'scientific_name': 'Drosophila melanogaster', '@id': '/organisms/dmelanogaster/', 'uuid': 'ab546d43-8e2a-4567-8db7-a217e6d6eea0', 'status': 'released'}, 'genes': ['/genes/31470/'], '@type': ['Target', 'Item'], 'name': 'Vsx1-dmelanogaster', 'label': 'Vsx1', '@id': '/targets/Vsx1-dmelanogaster/', 'title': 'Vsx1 (Drosophila melanogaster)', 'investigated_as': ['transcription factor'], 'uuid': '72c60cae-14c3-46f4-a9c4-9dfcacd4ebd5', 'status': 'released'} DNA 2017-11-22 modERN sonication (Bioruptor generic) 200-800 1 1_1 /files/ENCFF137QHL/ 17691904 Kevin White, UChicago dc677abeeebdadf710c86693fa557e41 https://www.encodeproject.org/files/ENCFF214WPA/@@download/ENCFF214WPA.bigWig released s3://encode-public/2017/09/18/d4641e9f-07ff-42f4-b67a-6fa115153026/ENCFF214WPA.bigWig Lab custom dm6 released missing genetic modification reagents, missing genetic modification characterization, missing biosample characterization ENCFF049HHA fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 323741404 Bradley Bernstein, Broad 122546af1f7a12e4d47f3d76c5c7599b https://www.encodeproject.org/files/ENCFF049HHA/@@download/ENCFF049HHA.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/682adfba-78f1-434e-acde-fc81939808da/ENCFF049HHA.fastq.gz ENCFF530MSC fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 324665212 Bradley Bernstein, Broad 020be717c824e4854b32fcb7c6b13bd2 https://www.encodeproject.org/files/ENCFF530MSC/@@download/ENCFF530MSC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/01ac630e-b921-4388-b04d-b940564e2560/ENCFF530MSC.fastq.gz ENCFF204XFB fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 325391302 Bradley Bernstein, Broad 188879eade3d9bd02175cd2c21969a0e https://www.encodeproject.org/files/ENCFF204XFB/@@download/ENCFF204XFB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/a327a061-3fce-4908-ae77-dfd1cc96290c/ENCFF204XFB.fastq.gz ENCFF724LED fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 337937684 Bradley Bernstein, Broad ee250f8f5fbe2399ac2120a2bb5c156b https://www.encodeproject.org/files/ENCFF724LED/@@download/ENCFF724LED.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/c7db64c1-1274-4715-b54a-eab9151c7aa0/ENCFF724LED.fastq.gz ENCFF133XTP fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 266603180 Bradley Bernstein, Broad d6eeaf67cbf8713f962c7dcc8722c988 https://www.encodeproject.org/files/ENCFF133XTP/@@download/ENCFF133XTP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/627b0572-6615-4181-91a5-e8dbd08a7153/ENCFF133XTP.fastq.gz ENCFF159IMO fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 267152241 Bradley Bernstein, Broad 3cd90f2856097a4441fee788804e0471 https://www.encodeproject.org/files/ENCFF159IMO/@@download/ENCFF159IMO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/1f274bd1-fbed-422c-a286-d55445772d4b/ENCFF159IMO.fastq.gz ENCFF031VXH fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 266809207 Bradley Bernstein, Broad c054412d5f04ad58004180e82b697f7c https://www.encodeproject.org/files/ENCFF031VXH/@@download/ENCFF031VXH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/04/30/6d6d1f87-5aec-4ded-aed3-815904563a88/ENCFF031VXH.fastq.gz ENCFF348LZS fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1 76 single-ended 263367265 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https://www.encodeproject.org/files/ENCFF679VPR/@@download/ENCFF679VPR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/2ab98efb-7b21-44b0-b52e-1d53c887534d/ENCFF679VPR.fastq.gz ENCFF319FIF fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 408335740 Bradley Bernstein, Broad bc53827f4d1b8d98989047653fe8c47b https://www.encodeproject.org/files/ENCFF319FIF/@@download/ENCFF319FIF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/1a9833df-24f9-4764-98c5-ae50cf6adae4/ENCFF319FIF.fastq.gz ENCFF105XFO fastq fastq reads ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_2 76 single-ended 406452993 Bradley Bernstein, Broad 22096406f0ee39b189cb25dc2b6c7417 https://www.encodeproject.org/files/ENCFF105XFO/@@download/ENCFF105XFO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2021/08/25/e2fef04d-87b5-48b0-a0fc-109497fc013d/ENCFF105XFO.fastq.gz ENCFF048PZW bam bam unfiltered alignments GRCh38 ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF724LED/, /files/ENCFF031VXH/, /files/ENCFF530MSC/, /files/ENCFF049HHA/, /files/ENCFF105XFO/, /files/ENCFF159IMO/, /files/ENCFF204XFB/, /files/ENCFF319FIF/, /files/ENCFF133XTP/, /files/ENCFF348LZS/, /files/ENCFF110MCL/, /files/ENCFF431SOX/, /files/ENCFF679VPR/ 3864834720 ENCODE Processing Pipeline 3370ed0c59a1ba0c266336fdb05437bb https://www.encodeproject.org/files/ENCFF048PZW/@@download/ENCFF048PZW.bam released s3://encode-public/2021/09/15/a488ce7d-bf5f-4d4a-9278-ccfd2730b49a/ENCFF048PZW.bam ENCODE4 v1.8.0 GRCh38 released ENCFF413UYG bam bam alignments GRCh38 ENCSR576VXL Control ChIP-seq /human-donors/ENCDO218FFZ/ UBERON:0006483 middle frontal area 46 tissue Homo sapiens DNA 2021-09-21 ENCODE 200-600 1 1_1, 1_2 76 /files/ENCFF724LED/, /files/ENCFF031VXH/, /files/ENCFF530MSC/, /files/ENCFF049HHA/, /files/ENCFF105XFO/, /files/ENCFF159IMO/, /files/ENCFF204XFB/, /files/ENCFF319FIF/, /files/ENCFF133XTP/, /files/ENCFF348LZS/, /files/ENCFF110MCL/, /files/ENCFF431SOX/, /files/ENCFF679VPR/ 3199312507 ENCODE Processing Pipeline f2723eb85f5cb3d819cb33cdc1c027de https://www.encodeproject.org/files/ENCFF413UYG/@@download/ENCFF413UYG.bam released s3://encode-public/2021/09/15/a328fa17-9ac8-4894-9735-7a7c07260003/ENCFF413UYG.bam ENCODE4 v1.8.0 GRCh38 released ENCFF201DYW fastq fastq reads ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 1 /files/ENCFF538WSF/ 2751867189 Michael Snyder, Stanford bad40b4afa3b1615fa373bafa25f2c1d SRA:SRR6213890 https://www.encodeproject.org/files/ENCFF201DYW/@@download/ENCFF201DYW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/41adaa65-deec-4caa-baee-96f8954812e7/ENCFF201DYW.fastq.gz mild to moderate bottlenecking ENCFF538WSF fastq fastq reads ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 paired-ended 2 /files/ENCFF201DYW/ 3190931883 Michael Snyder, Stanford 30d8e1fe0ee45b50cd49059ded733560 SRA:SRR6213890 https://www.encodeproject.org/files/ENCFF538WSF/@@download/ENCFF538WSF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/17/15177592-135f-49d7-ba8c-df712a74b82d/ENCFF538WSF.fastq.gz mild to moderate bottlenecking ENCFF802VRT bam bam unfiltered alignments GRCh38 ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF201DYW/, /files/ENCFF643CGH/, /files/ENCFF538WSF/ 5670589334 ENCODE Processing Pipeline 79459e18ff4d1a55acea4a4517d7b072 https://www.encodeproject.org/files/ENCFF802VRT/@@download/ENCFF802VRT.bam released s3://encode-public/2017/03/23/23d17273-6120-4a26-a9d2-8d0114e6804a/ENCFF802VRT.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF738AYQ bam bam unfiltered alignments hg19 ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF201DYW/, /files/ENCFF807MUK/, /files/ENCFF538WSF/ 5661607389 ENCODE Processing Pipeline ec73cc5fc438834b58c119d11d0194f0 https://www.encodeproject.org/files/ENCFF738AYQ/@@download/ENCFF738AYQ.bam released s3://encode-public/2017/03/23/41449884-726d-4ccd-89f4-01ac67ffc67b/ENCFF738AYQ.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF293TMJ bam bam alignments GRCh38 ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF201DYW/, /files/ENCFF643CGH/, /files/ENCFF538WSF/ 4393519766 ENCODE Processing Pipeline 98eeca26aafbffb13e3f029c05f74b19 https://www.encodeproject.org/files/ENCFF293TMJ/@@download/ENCFF293TMJ.bam released s3://encode-public/2017/03/23/3cf0d62c-e493-467a-b4ce-4806a83f96df/ENCFF293TMJ.bam ENCODE3 GRCh38 archived mild to moderate bottlenecking ENCFF869RCG bam bam alignments hg19 ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 101 /files/ENCFF201DYW/, /files/ENCFF807MUK/, /files/ENCFF538WSF/ 4384789420 ENCODE Processing Pipeline f1f768649b101d8621fbacdb6684f7c1 https://www.encodeproject.org/files/ENCFF869RCG/@@download/ENCFF869RCG.bam released s3://encode-public/2017/03/23/6e71118a-3c19-4a25-ad15-aa2d17b1a951/ENCFF869RCG.bam ENCODE3 hg19 archived mild to moderate bottlenecking ENCFF229PKF bam bam unfiltered alignments GRCh38 ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF201DYW/, /files/ENCFF538WSF/ 5663397522 ENCODE Processing Pipeline 98bb3ab20c697c87a210b14034264668 https://www.encodeproject.org/files/ENCFF229PKF/@@download/ENCFF229PKF.bam released s3://encode-public/2020/06/02/51a4851c-e592-402b-8b38-1ea39c1754dd/ENCFF229PKF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF091YLG bam bam alignments GRCh38 ENCSR499JBP Control ChIP-seq /human-donors/ENCDO451RUA/ UBERON:0002367 prostate gland tissue Homo sapiens DNA 2017-03-24 ENCODE 450-650 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF201DYW/, /files/ENCFF538WSF/ 4272786678 ENCODE Processing Pipeline 1e274819761698728c144a06b43b195a https://www.encodeproject.org/files/ENCFF091YLG/@@download/ENCFF091YLG.bam released s3://encode-public/2020/06/02/fee69cf5-1c43-41e0-bd45-90e2a88529c3/ENCFF091YLG.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF000VDZ bigWig bigWig signal hg19 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 /files/ENCFF000VEA/ 452602071 Peggy Farnham, USC a3587534e1b7cabc939f95230896ab8e https://www.encodeproject.org/files/ENCFF000VDZ/@@download/ENCFF000VDZ.bigWig archived s3://encode-public/2011/03/22/82003b61-7f3e-4111-a83c-49dee914856f/ENCFF000VDZ.bigWig Lab custom hg19 archived insufficient read length ENCFF000VEA bam bam alignments hg19 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 1701422534 Peggy Farnham, USC 6796687c100f9ea8483dfaa913f53c13 https://www.encodeproject.org/files/ENCFF000VEA/@@download/ENCFF000VEA.bam archived s3://encode-public/2011/03/22/a7b824ed-262a-4d11-a842-a8d43c3718ab/ENCFF000VEA.bam Lab custom hg19 archived insufficient read length ENCFF000VEK fastq fastq reads ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 single-ended 1317826268 Peggy Farnham, USC 09db1075d458dc26aafc649b32ab76a1 https://www.encodeproject.org/files/ENCFF000VEK/@@download/ENCFF000VEK.fastq.gz Illumina Genome Analyzer released s3://encode-public/2011/03/22/c5db1119-d07c-48e6-9cd9-54a1a0a92a80/ENCFF000VEK.fastq.gz insufficient read length ENCFF627RBN bam bam unfiltered alignments hg19 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 /files/ENCFF000VEK/, /files/ENCFF807MUK/ 1703826026 ENCODE Processing Pipeline 438c2242339cdd0122458a7e6f6eeb38 https://www.encodeproject.org/files/ENCFF627RBN/@@download/ENCFF627RBN.bam released s3://encode-public/2018/02/22/f63429f0-2e7d-47f4-a0ee-f4a0a7ac7b10/ENCFF627RBN.bam ENCODE3 hg19 archived insufficient read length ENCFF051ZZR bam bam alignments hg19 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 /files/ENCFF000VEK/, /files/ENCFF807MUK/ 1155120890 ENCODE Processing Pipeline 0f4218b93c7d06db362c7ef690d42521 https://www.encodeproject.org/files/ENCFF051ZZR/@@download/ENCFF051ZZR.bam released s3://encode-public/2016/06/29/d936de68-d0c4-4534-bfeb-6ed146d73a38/ENCFF051ZZR.bam ENCODE3 hg19 archived insufficient read length ENCFF390OZW bam bam unfiltered alignments GRCh38 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 /files/ENCFF000VEK/, /files/ENCFF643CGH/ 1709627977 ENCODE Processing Pipeline 3bd27f231f175c163cdd7b6c0889ec74 https://www.encodeproject.org/files/ENCFF390OZW/@@download/ENCFF390OZW.bam released s3://encode-public/2016/07/28/28f82d2a-6170-4fbe-963f-7e7fb77fbf52/ENCFF390OZW.bam ENCODE3 GRCh38 archived insufficient read length ENCFF355SGP bam bam alignments GRCh38 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 /files/ENCFF000VEK/, /files/ENCFF643CGH/ 1154197128 ENCODE Processing Pipeline 2022f6033e3a93d18702135a144410bb https://www.encodeproject.org/files/ENCFF355SGP/@@download/ENCFF355SGP.bam released s3://encode-public/2016/07/28/03a971fb-4573-472d-b350-e9bc589a9bcd/ENCFF355SGP.bam ENCODE3 GRCh38 archived insufficient read length ENCFF355LXQ bam bam alignments GRCh38 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VEK/ 1142569216 ENCODE Processing Pipeline 80e60571b73c77e791ef2d520a07bb08 https://www.encodeproject.org/files/ENCFF355LXQ/@@download/ENCFF355LXQ.bam released s3://encode-public/2020/09/03/d84f629c-d7ca-44a1-b2be-1f400ce0e203/ENCFF355LXQ.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF445QUH bam bam unfiltered alignments GRCh38 ENCSR000EWK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens DNA 2011-10-07 ENCODE see document 1 1_1 28 /files/ENCFF110MCL/, /files/ENCFF000VEK/ 1590135892 ENCODE Processing Pipeline 9d977e16422d84530e45a89942060f68 https://www.encodeproject.org/files/ENCFF445QUH/@@download/ENCFF445QUH.bam released s3://encode-public/2020/09/03/9ee34b1d-7481-4e41-a126-97dbad765111/ENCFF445QUH.bam ENCODE4 v1.5.1 GRCh38 released insufficient read length ENCFF000XSJ bam bam alignments hg19 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 27 /files/ENCFF000XTF/ 713169287 Michael Snyder, Stanford ababe1c6131cffa83ac2210225f0cf70 https://www.encodeproject.org/files/ENCFF000XSJ/@@download/ENCFF000XSJ.bam archived s3://encode-public/2012/07/01/b9f912da-b4fe-4ed2-b7ad-7281e48bae69/ENCFF000XSJ.bam Lab custom hg19 archived low read length ENCFF000XSN bigWig bigWig signal hg19 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 /files/ENCFF000XSJ/ 448012675 Michael Snyder, Stanford 05468c41490f3a9b1655e1160e1a4e21 https://www.encodeproject.org/files/ENCFF000XSN/@@download/ENCFF000XSN.bigWig archived s3://encode-public/2012/07/01/1d751285-7b4b-4be2-a315-d2ef48de7942/ENCFF000XSN.bigWig Lab custom hg19 archived low read length ENCFF000XTF fastq fastq reads ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 single-ended 1995859938 Michael Snyder, Stanford b17c2890cffb2d4f8fc4865a9f990756 https://www.encodeproject.org/files/ENCFF000XTF/@@download/ENCFF000XTF.fastq.gz Illumina Genome Analyzer released s3://encode-public/2012/07/01/0244f573-92e6-47ea-b8e4-dbbf6168e6a8/ENCFF000XTF.fastq.gz low read length ENCFF050KJB bam bam unfiltered alignments hg19 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000XTF/ 2364758852 ENCODE Processing Pipeline 4a064818957aeec65bd6625fe48f9514 https://www.encodeproject.org/files/ENCFF050KJB/@@download/ENCFF050KJB.bam released s3://encode-public/2016/08/23/acd4fbb5-1df4-46b4-9afc-cb14b9415234/ENCFF050KJB.bam ENCODE3 hg19 archived low read length ENCFF107SKX bam bam alignments hg19 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000XTF/ 1454138993 ENCODE Processing Pipeline 5df187e9d887ddca9389834dfe8e6e9b https://www.encodeproject.org/files/ENCFF107SKX/@@download/ENCFF107SKX.bam released s3://encode-public/2016/08/23/23b39fa2-d8c0-4f18-b610-70773bf520f2/ENCFF107SKX.bam ENCODE3 hg19 archived low read length ENCFF176RYY bam bam unfiltered alignments GRCh38 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000XTF/ 2378623989 ENCODE Processing Pipeline 1b7ac2d752d2f759ab9b0f867d6cefb3 https://www.encodeproject.org/files/ENCFF176RYY/@@download/ENCFF176RYY.bam released s3://encode-public/2016/10/29/df22dc75-99ad-48dc-be7e-f3ee19a6cf2e/ENCFF176RYY.bam ENCODE3 GRCh38 archived low read length ENCFF165KZY bam bam alignments GRCh38 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000XTF/ 1453746856 ENCODE Processing Pipeline 61e5c20123266c46cdd72e0175e03d76 https://www.encodeproject.org/files/ENCFF165KZY/@@download/ENCFF165KZY.bam released s3://encode-public/2016/10/29/81994877-b89c-474c-9822-f77f282aed63/ENCFF165KZY.bam ENCODE3 GRCh38 archived low read length ENCFF101KIW bam bam unfiltered alignments GRCh38 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000XTF/ 2337985714 ENCODE Processing Pipeline 6d5b72a3e6014b7be4e1580785657c0a https://www.encodeproject.org/files/ENCFF101KIW/@@download/ENCFF101KIW.bam released s3://encode-public/2020/10/27/1e623ea7-924b-4dc6-b04d-9d2d452e3455/ENCFF101KIW.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF772ZHK bam bam alignments GRCh38 ENCSR000EEN Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-10-29 ENCODE see document 1 1_1 36 /files/ENCFF110MCL/, /files/ENCFF000XTF/ 1580027018 ENCODE Processing Pipeline 971a3e1623f60dcca9a000af40bcda9c https://www.encodeproject.org/files/ENCFF772ZHK/@@download/ENCFF772ZHK.bam released s3://encode-public/2020/10/27/df3faf7f-a62d-4f8f-b2db-2edee9f53133/ENCFF772ZHK.bam ENCODE4 v1.5.1 GRCh38 released low read length ENCFF000BDP bam bam alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF000BDT/ 98902705 Bradley Bernstein, Broad 68e7eb7329d8860abf1c73903f0af4ac https://www.encodeproject.org/files/ENCFF000BDP/@@download/ENCFF000BDP.bam archived s3://encode-public/2010/11/16/676fd770-14c9-4bd9-9b8c-65d1f552fbc8/ENCFF000BDP.bam Lab custom hg19 archived low read length insufficient read depth extremely low read depth ENCFF000BDQ bam bam alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF000BDZ/ 402708417 Bradley Bernstein, Broad 41aec515c0618204280d1c722fa3629b https://www.encodeproject.org/files/ENCFF000BDQ/@@download/ENCFF000BDQ.bam archived s3://encode-public/2010/11/16/54cc6ed9-2dc0-4218-9d83-8816adf7059c/ENCFF000BDQ.bam Lab custom hg19 archived low read length insufficient read depth extremely low read depth ENCFF000BDS bigWig bigWig signal hg19 ENCSR000AME Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 325292790 Bradley Bernstein, Broad fd995002489c65749e8fc57e286f5665 https://www.encodeproject.org/files/ENCFF000BDS/@@download/ENCFF000BDS.bigWig archived s3://encode-public/2010/11/16/6943d500-42bd-4c2b-baae-b148c0cda08e/ENCFF000BDS.bigWig Lab custom hg19 archived low read length insufficient read depth extremely low read depth ENCFF000BDT fastq fastq reads ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 single-ended 93929910 Bradley Bernstein, Broad 37f2a5e2d49deeb845b23a3ef9d72140 https://www.encodeproject.org/files/ENCFF000BDT/@@download/ENCFF000BDT.fastq.gz Illumina Genome Analyzer IIe archived s3://encode-public/2010/11/16/ab929621-cb95-45aa-998c-97b4dbc5feff/ENCFF000BDT.fastq.gz low read length insufficient read depth extremely low read depth ENCFF000BDZ fastq fastq reads ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 single-ended 359095200 Bradley Bernstein, Broad eafbe31f66292b592a755ecaf735d0a0 https://www.encodeproject.org/files/ENCFF000BDZ/@@download/ENCFF000BDZ.fastq.gz Illumina Genome Analyzer IIe archived s3://encode-public/2010/11/16/e0c923ec-24e1-4b73-8aca-7925456fd54d/ENCFF000BDZ.fastq.gz low read length insufficient read depth extremely low read depth ENCFF242VCF bam bam alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000BDZ/ 334485753 ENCODE Processing Pipeline 439a507a1370b0cabec9e3b6ecb33968 https://www.encodeproject.org/files/ENCFF242VCF/@@download/ENCFF242VCF.bam archived s3://encode-public/2016/08/09/0ab5035b-f38c-444f-b9e9-a509974ab366/ENCFF242VCF.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF017BPX bam bam unfiltered alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BDT/ 125478860 ENCODE Processing Pipeline b57a4e996868454c52a0ae4c311f24bf https://www.encodeproject.org/files/ENCFF017BPX/@@download/ENCFF017BPX.bam archived s3://encode-public/2016/08/09/60d5e77f-5b3d-476d-b785-7153972d07ad/ENCFF017BPX.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF166CMQ bam bam alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF643CGH/, /files/ENCFF000BDT/ 57214842 ENCODE Processing Pipeline 2318246f5a7d6957b2567e4dd338f270 https://www.encodeproject.org/files/ENCFF166CMQ/@@download/ENCFF166CMQ.bam archived s3://encode-public/2016/08/09/cbd7e5cc-5d85-4950-aedd-ff79121612af/ENCFF166CMQ.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF241CPA bam bam unfiltered alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF643CGH/, /files/ENCFF000BDZ/ 510132510 ENCODE Processing Pipeline 769d6975fdfe2ef5c0d5884268046636 https://www.encodeproject.org/files/ENCFF241CPA/@@download/ENCFF241CPA.bam archived s3://encode-public/2016/08/09/3c2a0d9e-ed1b-4458-bccd-64cf9c7bb7f0/ENCFF241CPA.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF647DQA bam bam alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 30 /files/ENCFF807MUK/, /files/ENCFF000BDT/ 52906755 ENCODE Processing Pipeline f5914a93581e410c9832a65656e97995 https://www.encodeproject.org/files/ENCFF647DQA/@@download/ENCFF647DQA.bam archived s3://encode-public/2016/10/26/c2811510-840c-40b0-afb1-c895df3bf273/ENCFF647DQA.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF486PMP bam bam alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BDT/ 57206263 ENCODE Processing Pipeline 3b190a4f738ce94b255805a6edbdda4a https://www.encodeproject.org/files/ENCFF486PMP/@@download/ENCFF486PMP.bam archived s3://encode-public/2016/10/26/cb2a4e08-c813-422c-83d1-cbe12cad7eb2/ENCFF486PMP.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF249NJB bam bam unfiltered alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 30 /files/ENCFF807MUK/, /files/ENCFF000BDT/ 112865667 ENCODE Processing Pipeline b56e746de5abdaee6490a53c95663bbe https://www.encodeproject.org/files/ENCFF249NJB/@@download/ENCFF249NJB.bam archived s3://encode-public/2016/10/26/64fa8e0d-a0bc-479d-9420-30b1f819b3ca/ENCFF249NJB.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF190AKX bam bam unfiltered alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 30 /files/ENCFF643CGH/, /files/ENCFF000BDZ/ 438081640 ENCODE Processing Pipeline 6537b1176f70387e407d05c4ce863c97 https://www.encodeproject.org/files/ENCFF190AKX/@@download/ENCFF190AKX.bam archived s3://encode-public/2016/10/26/d4c40a99-290a-4b31-b028-983bcf7ec3b2/ENCFF190AKX.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF411FAT bam bam unfiltered alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 30 /files/ENCFF643CGH/, /files/ENCFF000BDT/ 113540769 ENCODE Processing Pipeline 69a43ee41c2b7ddc995da924857c28fc https://www.encodeproject.org/files/ENCFF411FAT/@@download/ENCFF411FAT.bam archived s3://encode-public/2016/10/26/941fe173-a6bd-4890-b36e-3620d4ccb5d2/ENCFF411FAT.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF170ZKZ bam bam unfiltered alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000BDZ/ 507461231 ENCODE Processing Pipeline 75b4efb1901e6db64772e575af894976 https://www.encodeproject.org/files/ENCFF170ZKZ/@@download/ENCFF170ZKZ.bam archived s3://encode-public/2016/10/26/36a35988-5ead-4921-b423-280c97f47957/ENCFF170ZKZ.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF360QGJ bam bam alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 30 /files/ENCFF807MUK/, /files/ENCFF000BDZ/ 278065940 ENCODE Processing Pipeline 39f42428fa693a5e01d9caeceddde086 https://www.encodeproject.org/files/ENCFF360QGJ/@@download/ENCFF360QGJ.bam archived s3://encode-public/2016/10/26/f58d4b8a-03b3-4ca2-af30-dfb65ec751fc/ENCFF360QGJ.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF849AKN bam bam unfiltered alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 36 /files/ENCFF807MUK/, /files/ENCFF000BDT/ 124679034 ENCODE Processing Pipeline f4aff7235ae7f30c7fce1b2586ea48b1 https://www.encodeproject.org/files/ENCFF849AKN/@@download/ENCFF849AKN.bam archived s3://encode-public/2016/10/26/76e136ea-bb88-4cbf-bdd2-0a9b3a27dca6/ENCFF849AKN.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF504UXZ bam bam unfiltered alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 30 /files/ENCFF807MUK/, /files/ENCFF000BDZ/ 435823907 ENCODE Processing Pipeline db1f404e4cab499b361f9b13277fae5f https://www.encodeproject.org/files/ENCFF504UXZ/@@download/ENCFF504UXZ.bam archived s3://encode-public/2016/10/26/d9856247-a4e5-490e-9437-f2d036f80dba/ENCFF504UXZ.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF757PNK bam bam alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 1 1_1 30 /files/ENCFF643CGH/, /files/ENCFF000BDT/ 52881425 ENCODE Processing Pipeline 12496ad694e6dac4b592cb8305cf59a9 https://www.encodeproject.org/files/ENCFF757PNK/@@download/ENCFF757PNK.bam archived s3://encode-public/2016/10/26/dc550072-e33a-4adf-a066-93f07c14f821/ENCFF757PNK.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF004EYN bam bam alignments GRCh38 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 30 /files/ENCFF643CGH/, /files/ENCFF000BDZ/ 277843736 ENCODE Processing Pipeline e00dcbe6a97494ec054552421de1873a https://www.encodeproject.org/files/ENCFF004EYN/@@download/ENCFF004EYN.bam archived s3://encode-public/2016/10/26/63b6d264-c327-4d7b-be71-236e90e68487/ENCFF004EYN.bam ENCODE3 GRCh38 released low read length insufficient read depth extremely low read depth ENCFF418INK bam bam alignments hg19 ENCSR000AME Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 2 2_1 36 /files/ENCFF807MUK/, /files/ENCFF000BDZ/ 334598044 ENCODE Processing Pipeline 023c4a6950eee22529c36b2f004bf087 https://www.encodeproject.org/files/ENCFF418INK/@@download/ENCFF418INK.bam archived s3://encode-public/2016/10/26/a2f4faba-7dc7-4fbe-9baa-fb2f0a78809e/ENCFF418INK.bam ENCODE3 hg19 archived low read length insufficient read depth extremely low read depth ENCFF450YIU tagAlign tagAlign alignments hg19 ENCSR000AME Control ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens DNA 2011-02-10 ENCODE see document 76634988 Anshul Kundaje, Stanford 78da151a5de14192fa5323042e054889 https://www.encodeproject.org/files/ENCFF450YIU/@@download/ENCFF450YIU.tagAlign.gz archived s3://encode-public/2016/07/19/694d8e40-80b4-40b8-8891-d4fc54dc1126/ENCFF450YIU.tagAlign.gz Lab custom hg19 archived low read length insufficient read depth extremely low read depth ENCFF400VSE fastq fastq reads ENCSR477JXX Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF190TNL/ 2390300972 Michael Snyder, Stanford b3795ff6b9413aec6a375425974e27ea https://www.encodeproject.org/files/ENCFF400VSE/@@download/ENCFF400VSE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/19/017e787b-a5f5-43df-8b59-3594cd0d8eaf/ENCFF400VSE.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF190TNL fastq fastq reads ENCSR477JXX Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF400VSE/ 2569000219 Michael Snyder, Stanford 16b9ff596d08f14d6aca98cd22b29bf0 https://www.encodeproject.org/files/ENCFF190TNL/@@download/ENCFF190TNL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/03/20/e5e0daf8-dec9-44f9-81dd-d81bed3ceb0a/ENCFF190TNL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF645PHD bam bam unfiltered alignments GRCh38 ENCSR477JXX Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF400VSE/, /files/ENCFF190TNL/ 4493584914 ENCODE Processing Pipeline 23583fe7b3c28cc51300bb3ccd4c75bd https://www.encodeproject.org/files/ENCFF645PHD/@@download/ENCFF645PHD.bam released s3://encode-public/2020/05/15/7009110c-a7fc-45e4-81e4-3559748a8137/ENCFF645PHD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF856SZB bam bam alignments GRCh38 ENCSR477JXX Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/2004/'], '@type': ['Target', 'Item'], 'name': 'ELK3-human', 'label': 'ELK3', '@id': '/targets/ELK3-human/', 'title': 'ELK3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd4fc6659-38e3-4971-b1f0-bc04e18afc51', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF400VSE/, /files/ENCFF190TNL/ 3078903761 ENCODE Processing Pipeline 1294ac447533ce4825b16c62ecbb6cae https://www.encodeproject.org/files/ENCFF856SZB/@@download/ENCFF856SZB.bam released s3://encode-public/2020/05/15/bcbdd597-c431-4f60-b14e-aabfc1065861/ENCFF856SZB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF658TPA fastq fastq reads ENCSR149IMO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF877SQF/ 2898898053 Michael Snyder, Stanford e59c4911355a8f15a3939602e511a766 https://www.encodeproject.org/files/ENCFF658TPA/@@download/ENCFF658TPA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/5635a15b-de20-4d68-9a4c-bcfeef6b8dce/ENCFF658TPA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF877SQF fastq fastq reads ENCSR149IMO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF658TPA/ 3455074916 Michael Snyder, Stanford fc41463c4c09a691b26a2457aacb1026 https://www.encodeproject.org/files/ENCFF877SQF/@@download/ENCFF877SQF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/13/4992ea8b-130e-4cb0-961e-fd536750f8f6/ENCFF877SQF.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF479OVC bam bam unfiltered alignments GRCh38 ENCSR149IMO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF658TPA/, /files/ENCFF877SQF/ 5845608079 ENCODE Processing Pipeline 95178cc49a7126adb375c9e11f37ae0e https://www.encodeproject.org/files/ENCFF479OVC/@@download/ENCFF479OVC.bam released s3://encode-public/2020/04/20/2875af21-62c9-45a2-b77d-1d9479f6653e/ENCFF479OVC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF558XPH bam bam alignments GRCh38 ENCSR149IMO Control ChIP-seq /human-donors/ENCDO000AAC/ EFO:0001187 HepG2 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:ATF4'], 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/468/'], '@type': ['Target', 'Item'], 'label': 'ATF4', 'title': 'ATF4 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '59904562-c5d6-4135-9e55-660e07026a0e', 'schema_version': '14', 'name': 'ATF4-human', '@id': '/targets/ATF4-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF658TPA/, /files/ENCFF877SQF/ 3922156254 ENCODE Processing Pipeline 805cd9359841c2a76bbf840cbd46d340 https://www.encodeproject.org/files/ENCFF558XPH/@@download/ENCFF558XPH.bam released s3://encode-public/2020/04/20/9878d451-fb1d-409f-be6b-5dfcada81633/ENCFF558XPH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF109UML fastq fastq reads ENCSR029KZF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF309EQX/ 2492686877 Michael Snyder, Stanford 7598b0569d4d9ec6b6d1fcbe0f5b6b11 https://www.encodeproject.org/files/ENCFF109UML/@@download/ENCFF109UML.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/16/0820eef8-69f6-43ae-b955-af209d248dcd/ENCFF109UML.fastq.gz mild to moderate bottlenecking ENCFF309EQX fastq fastq reads ENCSR029KZF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF109UML/ 2770750205 Michael Snyder, Stanford 8fad01c335a79070d8d8a1a65dc62692 https://www.encodeproject.org/files/ENCFF309EQX/@@download/ENCFF309EQX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/16/b01dd23e-08a7-4415-b893-fcf1ca2e5060/ENCFF309EQX.fastq.gz mild to moderate bottlenecking ENCFF132LIA bam bam alignments GRCh38 ENCSR029KZF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF109UML/, /files/ENCFF309EQX/ 3686866919 ENCODE Processing Pipeline 52a6ac1f5910c320cc039bfb0261405a https://www.encodeproject.org/files/ENCFF132LIA/@@download/ENCFF132LIA.bam released s3://encode-public/2020/04/20/33445c47-d165-4e53-b970-5144184ff0de/ENCFF132LIA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF908EDE bam bam unfiltered alignments GRCh38 ENCSR029KZF Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'dbxrefs': ['FactorBook:MAZ'], 'aliases': ['michael-snyder:TS-1819'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4150/'], '@type': ['Target', 'Item'], 'label': 'MAZ', 'title': 'MAZ (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a84519a6-5cb1-4e81-aeac-a2a79bb66a6f', 'schema_version': '14', 'name': 'MAZ-human', '@id': '/targets/MAZ-human/', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF109UML/, /files/ENCFF309EQX/ 4865022826 ENCODE Processing Pipeline 01ba2d1d4a7fcdf4db99f9eba7f1a95b https://www.encodeproject.org/files/ENCFF908EDE/@@download/ENCFF908EDE.bam released s3://encode-public/2020/04/20/f6590dc7-3133-4876-8c5b-45b921c62d3b/ENCFF908EDE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF277GJX fastq fastq reads ENCSR270QJI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-908'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/93134/'], '@type': ['Target', 'Item'], 'name': 'ZNF561-human', 'label': 'ZNF561', '@id': '/targets/ZNF561-human/', 'title': 'ZNF561 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb0d60b5-e2eb-4b5a-8492-e8fdd2c7bf84', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF047AUP/ 2798116238 Michael Snyder, Stanford e14b0f419e98414392cc69dce3cecff9 https://www.encodeproject.org/files/ENCFF277GJX/@@download/ENCFF277GJX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/4351d746-ffe1-4de1-bb3c-99468d2c9df1/ENCFF277GJX.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF047AUP fastq fastq reads ENCSR270QJI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-908'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/93134/'], '@type': ['Target', 'Item'], 'name': 'ZNF561-human', 'label': 'ZNF561', '@id': '/targets/ZNF561-human/', 'title': 'ZNF561 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb0d60b5-e2eb-4b5a-8492-e8fdd2c7bf84', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF277GJX/ 2485895063 Michael Snyder, Stanford 1cbdfc37fe35553d22fa17ee0940c713 https://www.encodeproject.org/files/ENCFF047AUP/@@download/ENCFF047AUP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/87550a45-4ead-4c63-89b1-b6a13fb5b8a0/ENCFF047AUP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF227YUE bam bam alignments GRCh38 ENCSR270QJI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-908'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/93134/'], '@type': ['Target', 'Item'], 'name': 'ZNF561-human', 'label': 'ZNF561', '@id': '/targets/ZNF561-human/', 'title': 'ZNF561 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb0d60b5-e2eb-4b5a-8492-e8fdd2c7bf84', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF047AUP/, /files/ENCFF277GJX/ 3330391725 ENCODE Processing Pipeline ad4d1c0442ed86eba51f7ff54f59beaa https://www.encodeproject.org/files/ENCFF227YUE/@@download/ENCFF227YUE.bam released s3://encode-public/2020/04/21/677788f2-e9ed-4aa2-9d90-7c235d8c73d1/ENCFF227YUE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF875JJJ bam bam unfiltered alignments GRCh38 ENCSR270QJI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-908'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/93134/'], '@type': ['Target', 'Item'], 'name': 'ZNF561-human', 'label': 'ZNF561', '@id': '/targets/ZNF561-human/', 'title': 'ZNF561 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'cb0d60b5-e2eb-4b5a-8492-e8fdd2c7bf84', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF047AUP/, /files/ENCFF277GJX/ 4775928088 ENCODE Processing Pipeline 7f6db31e050a24c06b1c05965bace9be https://www.encodeproject.org/files/ENCFF875JJJ/@@download/ENCFF875JJJ.bam released s3://encode-public/2020/04/21/345ac08b-9d9e-48f2-8488-df0835de2ecd/ENCFF875JJJ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF830JEP fastq fastq reads ENCSR905GXX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1031'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80317/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN3-human', 'label': 'ZKSCAN3', '@id': '/targets/ZKSCAN3-human/', 'title': 'ZKSCAN3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '22c7bb13-e70d-4ae1-a7b6-9d9ca003d7f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF132WBV/ 2623254184 Michael Snyder, Stanford 5b31f07e8f0b2594687528a7994ee98e SRA:SRR14106054 https://www.encodeproject.org/files/ENCFF830JEP/@@download/ENCFF830JEP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/9e4a4434-ee70-489a-a7a5-49de60b35e74/ENCFF830JEP.fastq.gz mild to moderate bottlenecking ENCFF132WBV fastq fastq reads ENCSR905GXX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1031'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80317/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN3-human', 'label': 'ZKSCAN3', '@id': '/targets/ZKSCAN3-human/', 'title': 'ZKSCAN3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '22c7bb13-e70d-4ae1-a7b6-9d9ca003d7f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF830JEP/ 2322780520 Michael Snyder, Stanford d3817ed3ac8bfd0c07cdf6da20c1ba6b SRA:SRR14106054 https://www.encodeproject.org/files/ENCFF132WBV/@@download/ENCFF132WBV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/b778f038-5c27-40ca-82fe-c0c5e56e322a/ENCFF132WBV.fastq.gz mild to moderate bottlenecking ENCFF813BZF bam bam alignments GRCh38 ENCSR905GXX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1031'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80317/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN3-human', 'label': 'ZKSCAN3', '@id': '/targets/ZKSCAN3-human/', 'title': 'ZKSCAN3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '22c7bb13-e70d-4ae1-a7b6-9d9ca003d7f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF132WBV/, /files/ENCFF830JEP/ 3937570573 ENCODE Processing Pipeline 11d4e77d7092f3d14942fd9ef0f08b25 https://www.encodeproject.org/files/ENCFF813BZF/@@download/ENCFF813BZF.bam released s3://encode-public/2020/04/20/fdafd1b2-b2ca-4993-87d3-d053034b52d3/ENCFF813BZF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF471DSE bam bam unfiltered alignments GRCh38 ENCSR905GXX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1031'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/80317/'], '@type': ['Target', 'Item'], 'name': 'ZKSCAN3-human', 'label': 'ZKSCAN3', '@id': '/targets/ZKSCAN3-human/', 'title': 'ZKSCAN3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '22c7bb13-e70d-4ae1-a7b6-9d9ca003d7f1', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF132WBV/, /files/ENCFF830JEP/ 4924201846 ENCODE Processing Pipeline 1a71a6dbdb80aa5bc1880ecdd53b57ca https://www.encodeproject.org/files/ENCFF471DSE/@@download/ENCFF471DSE.bam released s3://encode-public/2020/04/20/6fbf7862-05ab-4d44-9928-f6054896f566/ENCFF471DSE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF601OII fastq fastq reads ENCSR721XZK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1664'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6939/'], '@type': ['Target', 'Item'], 'name': 'TCF15-human', 'label': 'TCF15', '@id': '/targets/TCF15-human/', 'title': 'TCF15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fa33e916-4768-45fa-bdc5-a1eaa1bb24c9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF544PEW/ 2226439369 Michael Snyder, Stanford 774ddfd863631b2c9878a0624a28b2a7 SRA:SRR14103239 https://www.encodeproject.org/files/ENCFF601OII/@@download/ENCFF601OII.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/c92d09c2-f446-4af4-b79d-a6936c1a67ac/ENCFF601OII.fastq.gz ENCFF544PEW fastq fastq reads ENCSR721XZK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1664'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6939/'], '@type': ['Target', 'Item'], 'name': 'TCF15-human', 'label': 'TCF15', '@id': '/targets/TCF15-human/', 'title': 'TCF15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fa33e916-4768-45fa-bdc5-a1eaa1bb24c9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF601OII/ 2383590622 Michael Snyder, Stanford 27f3f7a514b5147c76e0d3cb09875b37 SRA:SRR14103239 https://www.encodeproject.org/files/ENCFF544PEW/@@download/ENCFF544PEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/248a3f8d-8e0b-46aa-bf15-924da79f8ca6/ENCFF544PEW.fastq.gz ENCFF675FHK bam bam unfiltered alignments GRCh38 ENCSR721XZK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1664'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6939/'], '@type': ['Target', 'Item'], 'name': 'TCF15-human', 'label': 'TCF15', '@id': '/targets/TCF15-human/', 'title': 'TCF15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fa33e916-4768-45fa-bdc5-a1eaa1bb24c9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF601OII/, /files/ENCFF544PEW/ 4589337404 ENCODE Processing Pipeline 12f040c6731cc75a8d1533efe57a84bc https://www.encodeproject.org/files/ENCFF675FHK/@@download/ENCFF675FHK.bam released s3://encode-public/2020/05/15/b05f93c1-26cf-4ccc-9984-f1e0c5113db9/ENCFF675FHK.bam ENCODE4 v1.4.0 GRCh38 released ENCFF674VRY bam bam alignments GRCh38 ENCSR721XZK Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1664'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6939/'], '@type': ['Target', 'Item'], 'name': 'TCF15-human', 'label': 'TCF15', '@id': '/targets/TCF15-human/', 'title': 'TCF15 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fa33e916-4768-45fa-bdc5-a1eaa1bb24c9', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF601OII/, /files/ENCFF544PEW/ 3613121212 ENCODE Processing Pipeline 16e6fb70fe5d2e5d85f9d5d37a60e57f https://www.encodeproject.org/files/ENCFF674VRY/@@download/ENCFF674VRY.bam released s3://encode-public/2020/05/15/73c5b85b-ae2c-4532-a3d3-c684d9f5a6f3/ENCFF674VRY.bam ENCODE4 v1.4.0 GRCh38 released ENCFF389QGK fastq fastq reads ENCSR193NPW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-812'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147949/'], '@type': ['Target', 'Item'], 'name': 'ZNF583-human', 'label': 'ZNF583', '@id': '/targets/ZNF583-human/', 'title': 'ZNF583 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '915127d2-bd2f-41df-a639-193334fd26c2', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF616COY/ 2699121520 Michael Snyder, Stanford 9acc144702386a3b5f757525eb97d5f7 https://www.encodeproject.org/files/ENCFF389QGK/@@download/ENCFF389QGK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/097c5627-9adc-4ffa-b147-d8a13b637384/ENCFF389QGK.fastq.gz ENCFF616COY fastq fastq reads ENCSR193NPW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-812'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147949/'], '@type': ['Target', 'Item'], 'name': 'ZNF583-human', 'label': 'ZNF583', '@id': '/targets/ZNF583-human/', 'title': 'ZNF583 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '915127d2-bd2f-41df-a639-193334fd26c2', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF389QGK/ 2862624518 Michael Snyder, Stanford 235b85ea882535d7594245ec15c766b9 https://www.encodeproject.org/files/ENCFF616COY/@@download/ENCFF616COY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/17/842c296d-d8cc-4186-a3f3-dc334e2c721b/ENCFF616COY.fastq.gz ENCFF331AFN bam bam alignments GRCh38 ENCSR193NPW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-812'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147949/'], '@type': ['Target', 'Item'], 'name': 'ZNF583-human', 'label': 'ZNF583', '@id': '/targets/ZNF583-human/', 'title': 'ZNF583 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '915127d2-bd2f-41df-a639-193334fd26c2', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF389QGK/, /files/ENCFF616COY/ 4072431764 ENCODE Processing Pipeline 8c730357f15552c5ca0a41806142060f https://www.encodeproject.org/files/ENCFF331AFN/@@download/ENCFF331AFN.bam released s3://encode-public/2020/05/15/82a56d31-93ba-465c-b545-237b9b749a1f/ENCFF331AFN.bam ENCODE4 v1.4.0 GRCh38 released ENCFF967OJI bam bam unfiltered alignments GRCh38 ENCSR193NPW Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-812'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/147949/'], '@type': ['Target', 'Item'], 'name': 'ZNF583-human', 'label': 'ZNF583', '@id': '/targets/ZNF583-human/', 'title': 'ZNF583 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '915127d2-bd2f-41df-a639-193334fd26c2', 'status': 'released'} DNA 2021-07-14 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF389QGK/, /files/ENCFF616COY/ 5396807769 ENCODE Processing Pipeline 463809297b7afafecc7d5c9ab3206a5f https://www.encodeproject.org/files/ENCFF967OJI/@@download/ENCFF967OJI.bam released s3://encode-public/2020/05/15/eb2a0bbe-c0a1-4856-8942-a2316588fb45/ENCFF967OJI.bam ENCODE4 v1.4.0 GRCh38 released ENCFF956SAR fastq fastq reads ENCSR116EAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7629/'], '@type': ['Target', 'Item'], 'name': 'ZNF76-human', 'label': 'ZNF76', '@id': '/targets/ZNF76-human/', 'title': 'ZNF76 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be082d7e-cd28-4e76-a1a2-27b22198ae98', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF220RWB/ 2483907581 Michael Snyder, Stanford e2f43ab84294469423435778f1e2cf6c SRA:SRR14104410 https://www.encodeproject.org/files/ENCFF956SAR/@@download/ENCFF956SAR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/6de957d2-7b91-4445-a362-53bd52066e40/ENCFF956SAR.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF220RWB fastq fastq reads ENCSR116EAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7629/'], '@type': ['Target', 'Item'], 'name': 'ZNF76-human', 'label': 'ZNF76', '@id': '/targets/ZNF76-human/', 'title': 'ZNF76 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be082d7e-cd28-4e76-a1a2-27b22198ae98', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF956SAR/ 2979646405 Michael Snyder, Stanford a26b9f35b769936cd82f537a30c58ea9 SRA:SRR14104410 https://www.encodeproject.org/files/ENCFF220RWB/@@download/ENCFF220RWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/eabc22a4-823d-4d0e-aee7-c56a5c7280ea/ENCFF220RWB.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF081BDT bam bam unfiltered alignments GRCh38 ENCSR116EAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7629/'], '@type': ['Target', 'Item'], 'name': 'ZNF76-human', 'label': 'ZNF76', '@id': '/targets/ZNF76-human/', 'title': 'ZNF76 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be082d7e-cd28-4e76-a1a2-27b22198ae98', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF956SAR/, /files/ENCFF220RWB/ 5127552057 ENCODE Processing Pipeline da9bd951829ab566518d2ae7cc2eb11e https://www.encodeproject.org/files/ENCFF081BDT/@@download/ENCFF081BDT.bam released s3://encode-public/2020/04/20/2c3c2c57-8d85-4397-a0b6-ecf6793dbde2/ENCFF081BDT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF348RZI bam bam alignments GRCh38 ENCSR116EAU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7629/'], '@type': ['Target', 'Item'], 'name': 'ZNF76-human', 'label': 'ZNF76', '@id': '/targets/ZNF76-human/', 'title': 'ZNF76 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'be082d7e-cd28-4e76-a1a2-27b22198ae98', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF956SAR/, /files/ENCFF220RWB/ 3756622837 ENCODE Processing Pipeline 172116fadb9407c902548a044098283d https://www.encodeproject.org/files/ENCFF348RZI/@@download/ENCFF348RZI.bam released s3://encode-public/2020/04/20/7029b1b0-fb1f-4519-ad17-80c8122532fb/ENCFF348RZI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF338LXJ fastq fastq reads ENCSR134JXS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1835'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3428/'], '@type': ['Target', 'Item'], 'name': 'IFI16-human', 'label': 'IFI16', '@id': '/targets/IFI16-human/', 'title': 'IFI16 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fdd2dfb9-1219-4c93-ad12-656636a5ba65', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF142CHD/ 2647317467 Michael Snyder, Stanford c622156f576322a9ec4b4d05f44ac5a7 SRA:SRR14105379 https://www.encodeproject.org/files/ENCFF338LXJ/@@download/ENCFF338LXJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/ff8f094b-fed7-44bf-bd09-8362dbeed0a7/ENCFF338LXJ.fastq.gz mild to moderate bottlenecking ENCFF142CHD fastq fastq reads ENCSR134JXS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1835'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3428/'], '@type': ['Target', 'Item'], 'name': 'IFI16-human', 'label': 'IFI16', '@id': '/targets/IFI16-human/', 'title': 'IFI16 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fdd2dfb9-1219-4c93-ad12-656636a5ba65', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF338LXJ/ 2942653906 Michael Snyder, Stanford f1dac6bab4a33ed675445d6f2fd80231 SRA:SRR14105379 https://www.encodeproject.org/files/ENCFF142CHD/@@download/ENCFF142CHD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/89474239-0c10-493b-8e17-cf2a1dcc4afa/ENCFF142CHD.fastq.gz mild to moderate bottlenecking ENCFF217LSM bam bam alignments GRCh38 ENCSR134JXS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1835'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3428/'], '@type': ['Target', 'Item'], 'name': 'IFI16-human', 'label': 'IFI16', '@id': '/targets/IFI16-human/', 'title': 'IFI16 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fdd2dfb9-1219-4c93-ad12-656636a5ba65', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF338LXJ/, /files/ENCFF142CHD/ 3888980752 ENCODE Processing Pipeline 9e6c8bf8bc764b42fae1715534d45505 https://www.encodeproject.org/files/ENCFF217LSM/@@download/ENCFF217LSM.bam released s3://encode-public/2020/04/21/e26ed040-5c2d-47da-b447-09a3100cf392/ENCFF217LSM.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF906JLZ bam bam unfiltered alignments GRCh38 ENCSR134JXS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1835'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3428/'], '@type': ['Target', 'Item'], 'name': 'IFI16-human', 'label': 'IFI16', '@id': '/targets/IFI16-human/', 'title': 'IFI16 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'fdd2dfb9-1219-4c93-ad12-656636a5ba65', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF338LXJ/, /files/ENCFF142CHD/ 5217748122 ENCODE Processing Pipeline 3c65d1c45ad1bf80bb5abcd702a12193 https://www.encodeproject.org/files/ENCFF906JLZ/@@download/ENCFF906JLZ.bam released s3://encode-public/2020/04/21/51acc4bb-b6e8-4241-9e2a-cdbc9da74bd7/ENCFF906JLZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF953RFT fastq fastq reads ENCSR409VQS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1703'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6474/'], '@type': ['Target', 'Item'], 'name': 'SHOX2-human', 'label': 'SHOX2', '@id': '/targets/SHOX2-human/', 'title': 'SHOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '79a31505-ebf8-4514-96ab-356836b1f800', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF257QOM/ 2465028047 Michael Snyder, Stanford 9038cfc3e4fa3b9e84814bcccb8bb227 SRA:SRR14638544 https://www.encodeproject.org/files/ENCFF953RFT/@@download/ENCFF953RFT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/25007604-1d28-49dc-940f-61aa5cb79e9f/ENCFF953RFT.fastq.gz mild to moderate bottlenecking, moderate library complexity missing compliant biosample characterization ENCFF257QOM fastq fastq reads ENCSR409VQS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1703'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6474/'], '@type': ['Target', 'Item'], 'name': 'SHOX2-human', 'label': 'SHOX2', '@id': '/targets/SHOX2-human/', 'title': 'SHOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '79a31505-ebf8-4514-96ab-356836b1f800', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF953RFT/ 2731012078 Michael Snyder, Stanford 7f38579a81081152d1a471851800146a SRA:SRR14638544 https://www.encodeproject.org/files/ENCFF257QOM/@@download/ENCFF257QOM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/03502356-2558-4b53-9747-1a2290d103da/ENCFF257QOM.fastq.gz mild to moderate bottlenecking, moderate library complexity missing compliant biosample characterization ENCFF859ART bam bam unfiltered alignments GRCh38 ENCSR409VQS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1703'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6474/'], '@type': ['Target', 'Item'], 'name': 'SHOX2-human', 'label': 'SHOX2', '@id': '/targets/SHOX2-human/', 'title': 'SHOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '79a31505-ebf8-4514-96ab-356836b1f800', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF953RFT/, /files/ENCFF257QOM/ 4540988965 ENCODE Processing Pipeline 4972990e52fe9430086be590c166fd1a https://www.encodeproject.org/files/ENCFF859ART/@@download/ENCFF859ART.bam released s3://encode-public/2020/04/20/e1c47350-d777-4ae8-9447-c65486fd66f4/ENCFF859ART.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity missing compliant biosample characterization ENCFF967JJH bam bam alignments GRCh38 ENCSR409VQS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1703'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6474/'], '@type': ['Target', 'Item'], 'name': 'SHOX2-human', 'label': 'SHOX2', '@id': '/targets/SHOX2-human/', 'title': 'SHOX2 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '79a31505-ebf8-4514-96ab-356836b1f800', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF953RFT/, /files/ENCFF257QOM/ 3061127985 ENCODE Processing Pipeline bb7375466da4fc96ad8f4fa98feb1ab8 https://www.encodeproject.org/files/ENCFF967JJH/@@download/ENCFF967JJH.bam released s3://encode-public/2020/04/20/1f02b9e0-6e53-4281-a39a-53f687da8b79/ENCFF967JJH.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity missing compliant biosample characterization ENCFF773QAA fastq fastq reads ENCSR292SJS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221527/'], '@type': ['Target', 'Item'], 'name': 'ZBTB12-human', 'label': 'ZBTB12', '@id': '/targets/ZBTB12-human/', 'title': 'ZBTB12 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a94760dd-89d5-4525-b326-467dcfb21385', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF258JTC/ 2352875560 Michael Snyder, Stanford 67663706164dff1802fec3d76234a9d2 https://www.encodeproject.org/files/ENCFF773QAA/@@download/ENCFF773QAA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/ebc8ab9b-37c7-4251-ac3e-3230c06f389a/ENCFF773QAA.fastq.gz mild to moderate bottlenecking ENCFF258JTC fastq fastq reads ENCSR292SJS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221527/'], '@type': ['Target', 'Item'], 'name': 'ZBTB12-human', 'label': 'ZBTB12', '@id': '/targets/ZBTB12-human/', 'title': 'ZBTB12 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a94760dd-89d5-4525-b326-467dcfb21385', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF773QAA/ 2224152411 Michael Snyder, Stanford 803b1f24d8210c964d65a5d6fea695ad https://www.encodeproject.org/files/ENCFF258JTC/@@download/ENCFF258JTC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/d88183cd-027f-488e-8bba-1cd7bd3f442e/ENCFF258JTC.fastq.gz mild to moderate bottlenecking ENCFF447QMR bam bam unfiltered alignments GRCh38 ENCSR292SJS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221527/'], '@type': ['Target', 'Item'], 'name': 'ZBTB12-human', 'label': 'ZBTB12', '@id': '/targets/ZBTB12-human/', 'title': 'ZBTB12 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a94760dd-89d5-4525-b326-467dcfb21385', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF258JTC/, /files/ENCFF773QAA/ 4575404534 ENCODE Processing Pipeline 1bf775c4e884df22cf9df0f52ce1fb39 https://www.encodeproject.org/files/ENCFF447QMR/@@download/ENCFF447QMR.bam released s3://encode-public/2020/05/15/01b7b4f1-a63b-4d20-84fe-f844e055ada4/ENCFF447QMR.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF464PFZ bam bam alignments GRCh38 ENCSR292SJS Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/221527/'], '@type': ['Target', 'Item'], 'name': 'ZBTB12-human', 'label': 'ZBTB12', '@id': '/targets/ZBTB12-human/', 'title': 'ZBTB12 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'a94760dd-89d5-4525-b326-467dcfb21385', 'status': 'released'} DNA 2022-01-20 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF258JTC/, /files/ENCFF773QAA/ 3641566036 ENCODE Processing Pipeline 1e3cca030150b3584b1e9e2257e079ee https://www.encodeproject.org/files/ENCFF464PFZ/@@download/ENCFF464PFZ.bam released s3://encode-public/2020/05/15/c0b3006c-f73e-4e48-93cf-e55a7391d7fa/ENCFF464PFZ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF958ZOS fastq fastq reads ENCSR754EHE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1245'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54807/'], '@type': ['Target', 'Item'], 'name': 'ZNF586-human', 'label': 'ZNF586', '@id': '/targets/ZNF586-human/', 'title': 'ZNF586 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '465006bd-4e7a-40a1-bbfe-7767256e7bb5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF387HKA/ 2176730793 Michael Snyder, Stanford 6fad8543c5e53e3e1ddab89f7be1c8e2 https://www.encodeproject.org/files/ENCFF958ZOS/@@download/ENCFF958ZOS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/16/570ae633-9c64-4a47-8e0d-2c20989d331d/ENCFF958ZOS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF387HKA fastq fastq reads ENCSR754EHE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1245'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54807/'], '@type': ['Target', 'Item'], 'name': 'ZNF586-human', 'label': 'ZNF586', '@id': '/targets/ZNF586-human/', 'title': 'ZNF586 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '465006bd-4e7a-40a1-bbfe-7767256e7bb5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF958ZOS/ 2426386066 Michael Snyder, Stanford d94eefe10936b657fd671dae3f8b176c https://www.encodeproject.org/files/ENCFF387HKA/@@download/ENCFF387HKA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/16/f65ee9b3-7b6b-4cca-a152-d0453eee8bf0/ENCFF387HKA.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF612LEX bam bam unfiltered alignments GRCh38 ENCSR754EHE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1245'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54807/'], '@type': ['Target', 'Item'], 'name': 'ZNF586-human', 'label': 'ZNF586', '@id': '/targets/ZNF586-human/', 'title': 'ZNF586 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '465006bd-4e7a-40a1-bbfe-7767256e7bb5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF958ZOS/, /files/ENCFF387HKA/ 4253337582 ENCODE Processing Pipeline 51b94f50cc93afda1283a06359b85a78 https://www.encodeproject.org/files/ENCFF612LEX/@@download/ENCFF612LEX.bam released s3://encode-public/2020/04/20/453f533e-31a6-4c13-b209-1864d16bcc89/ENCFF612LEX.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF728EFE bam bam alignments GRCh38 ENCSR754EHE Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1245'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/54807/'], '@type': ['Target', 'Item'], 'name': 'ZNF586-human', 'label': 'ZNF586', '@id': '/targets/ZNF586-human/', 'title': 'ZNF586 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '465006bd-4e7a-40a1-bbfe-7767256e7bb5', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF958ZOS/, /files/ENCFF387HKA/ 3098879386 ENCODE Processing Pipeline 0bdd1e892a988e58ca8b798167880bea https://www.encodeproject.org/files/ENCFF728EFE/@@download/ENCFF728EFE.bam released s3://encode-public/2020/04/20/89ff52dd-a9e5-432c-914b-cc008e917547/ENCFF728EFE.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF636INL fastq fastq reads ENCSR326NFX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF741ABI/ 2143810018 Michael Snyder, Stanford 2089e6121425d6bc41644ba8f85e44fc SRA:SRR14105223 https://www.encodeproject.org/files/ENCFF636INL/@@download/ENCFF636INL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/ba21392a-8d8a-4924-b684-4cc2d52fc0be/ENCFF636INL.fastq.gz mild to moderate bottlenecking ENCFF741ABI fastq fastq reads ENCSR326NFX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF636INL/ 2400704739 Michael Snyder, Stanford 8203fcf7579331b3620bb7e73ab1399f SRA:SRR14105223 https://www.encodeproject.org/files/ENCFF741ABI/@@download/ENCFF741ABI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/8153f579-32b0-4777-a769-390cc226595c/ENCFF741ABI.fastq.gz mild to moderate bottlenecking ENCFF752PBK bam bam unfiltered alignments GRCh38 ENCSR326NFX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF636INL/, /files/ENCFF741ABI/ 4316760365 ENCODE Processing Pipeline 06236113df779c79f46b9e85f4e1ea0e https://www.encodeproject.org/files/ENCFF752PBK/@@download/ENCFF752PBK.bam released s3://encode-public/2020/04/21/b7b9e7b8-cce5-40f6-b2a6-a9245ea66f53/ENCFF752PBK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF217TAF bam bam alignments GRCh38 ENCSR326NFX Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/23528/'], '@type': ['Target', 'Item'], 'name': 'ZNF281-human', 'label': 'ZNF281', '@id': '/targets/ZNF281-human/', 'title': 'ZNF281 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'bfe57a1c-5689-42fc-ba26-bbb3fbc53cf4', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF636INL/, /files/ENCFF741ABI/ 3280328603 ENCODE Processing Pipeline 2fc3d79eef357e13c9b8a53ddf8afa7e https://www.encodeproject.org/files/ENCFF217TAF/@@download/ENCFF217TAF.bam released s3://encode-public/2020/04/21/b2dc3850-fb09-44c2-b6cb-051132e78745/ENCFF217TAF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF861ZIE fastq fastq reads ENCSR918YCV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8187/'], '@type': ['Target', 'Item'], 'name': 'ZNF239-human', 'label': 'ZNF239', '@id': '/targets/ZNF239-human/', 'title': 'ZNF239 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '979347b7-1591-4b19-8e26-b6160815c768', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF340ADE/ 2522182533 Michael Snyder, Stanford 38613b534e5963126fdfdeff56076f00 SRA:SRR14106909 https://www.encodeproject.org/files/ENCFF861ZIE/@@download/ENCFF861ZIE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/e5f4badb-216c-4a69-b61b-b823e858a8ea/ENCFF861ZIE.fastq.gz mild to moderate bottlenecking ENCFF340ADE fastq fastq reads ENCSR918YCV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8187/'], '@type': ['Target', 'Item'], 'name': 'ZNF239-human', 'label': 'ZNF239', '@id': '/targets/ZNF239-human/', 'title': 'ZNF239 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '979347b7-1591-4b19-8e26-b6160815c768', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF861ZIE/ 2764536423 Michael Snyder, Stanford 26778c24362d1f9f63f02c52e663a546 SRA:SRR14106909 https://www.encodeproject.org/files/ENCFF340ADE/@@download/ENCFF340ADE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/ff3b3ce2-62d1-4542-a2e1-112d77ac2363/ENCFF340ADE.fastq.gz mild to moderate bottlenecking ENCFF683IOC bam bam unfiltered alignments GRCh38 ENCSR918YCV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8187/'], '@type': ['Target', 'Item'], 'name': 'ZNF239-human', 'label': 'ZNF239', '@id': '/targets/ZNF239-human/', 'title': 'ZNF239 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '979347b7-1591-4b19-8e26-b6160815c768', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF861ZIE/, /files/ENCFF340ADE/ 5002158137 ENCODE Processing Pipeline 165aecd60468825de5947c7af79ab5dc https://www.encodeproject.org/files/ENCFF683IOC/@@download/ENCFF683IOC.bam released s3://encode-public/2020/04/20/e8aa9a92-cf74-48fc-9245-8a62638e1121/ENCFF683IOC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF279DDB bam bam alignments GRCh38 ENCSR918YCV Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/8187/'], '@type': ['Target', 'Item'], 'name': 'ZNF239-human', 'label': 'ZNF239', '@id': '/targets/ZNF239-human/', 'title': 'ZNF239 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '979347b7-1591-4b19-8e26-b6160815c768', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF861ZIE/, /files/ENCFF340ADE/ 3870624684 ENCODE Processing Pipeline af73521d2c1481aaea6b22b13749efcf https://www.encodeproject.org/files/ENCFF279DDB/@@download/ENCFF279DDB.bam released s3://encode-public/2020/04/20/1090c307-33c9-4b6a-b45c-1de741abf38f/ENCFF279DDB.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF161GBD fastq fastq reads ENCSR667UGH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF118WZS/ 3334939165 Michael Snyder, Stanford 26d96dd4bcdb4e1ac94c129031ea9ae6 SRA:SRR14847069 https://www.encodeproject.org/files/ENCFF161GBD/@@download/ENCFF161GBD.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/fc161b21-df5d-4344-b1c5-a7099ad8d0f8/ENCFF161GBD.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF118WZS fastq fastq reads ENCSR667UGH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF161GBD/ 3532101478 Michael Snyder, Stanford 7f5b19f2130ef132b6a1293ab725b6c2 SRA:SRR14847069 https://www.encodeproject.org/files/ENCFF118WZS/@@download/ENCFF118WZS.fastq.gz Illumina NovaSeq 6000 released s3://encode-public/2020/10/23/e95ee59c-7712-4b7f-aaca-0ad02ad68568/ENCFF118WZS.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF517RSP bam bam alignments GRCh38 ENCSR667UGH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF161GBD/, /files/ENCFF118WZS/ 3155091401 ENCODE Processing Pipeline 019d10b202eff4d8dd151870f2ebb660 https://www.encodeproject.org/files/ENCFF517RSP/@@download/ENCFF517RSP.bam released s3://encode-public/2021/03/18/8d4ed941-b6ae-4b9f-9b69-b12e986d4bba/ENCFF517RSP.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF271ABQ bam bam unfiltered alignments GRCh38 ENCSR667UGH Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2021-03-26 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF161GBD/, /files/ENCFF118WZS/ 5232999494 ENCODE Processing Pipeline 37b939e343e6532f8e73308300dd976f https://www.encodeproject.org/files/ENCFF271ABQ/@@download/ENCFF271ABQ.bam released s3://encode-public/2021/03/18/3add2456-3482-4780-9782-a0c1af988ca4/ENCFF271ABQ.bam ENCODE4 v1.7.1 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF129WCO fastq fastq reads ENCSR167ONN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1316/'], '@type': ['Target', 'Item'], 'name': 'KLF6-human', 'label': 'KLF6', '@id': '/targets/KLF6-human/', 'title': 'KLF6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b25b252-27ad-45f3-a258-39b40e227e17', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF650PGY/ 2684552222 Michael Snyder, Stanford 4fee34959d93c897483beb08cb139d96 SRA:SRR14106073 https://www.encodeproject.org/files/ENCFF129WCO/@@download/ENCFF129WCO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/4dc4b7cb-e983-4735-9141-68dfe4fdf546/ENCFF129WCO.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF650PGY fastq fastq reads ENCSR167ONN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1316/'], '@type': ['Target', 'Item'], 'name': 'KLF6-human', 'label': 'KLF6', '@id': '/targets/KLF6-human/', 'title': 'KLF6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b25b252-27ad-45f3-a258-39b40e227e17', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF129WCO/ 2949706913 Michael Snyder, Stanford d1a04a21e13ba2e6573bed2bcb6c6966 SRA:SRR14106073 https://www.encodeproject.org/files/ENCFF650PGY/@@download/ENCFF650PGY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/2078c44a-1166-41f3-9150-8cd17db181b4/ENCFF650PGY.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF305ZUD bam bam alignments GRCh38 ENCSR167ONN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1316/'], '@type': ['Target', 'Item'], 'name': 'KLF6-human', 'label': 'KLF6', '@id': '/targets/KLF6-human/', 'title': 'KLF6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b25b252-27ad-45f3-a258-39b40e227e17', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF129WCO/, /files/ENCFF650PGY/ 3300797663 ENCODE Processing Pipeline 767dcfbfaa18b3ca063b6083ca434569 https://www.encodeproject.org/files/ENCFF305ZUD/@@download/ENCFF305ZUD.bam released s3://encode-public/2020/04/20/3bdc65c4-853e-4775-9d42-00954fb4d7c9/ENCFF305ZUD.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF131NRQ bam bam unfiltered alignments GRCh38 ENCSR167ONN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/1316/'], '@type': ['Target', 'Item'], 'name': 'KLF6-human', 'label': 'KLF6', '@id': '/targets/KLF6-human/', 'title': 'KLF6 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '8b25b252-27ad-45f3-a258-39b40e227e17', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF129WCO/, /files/ENCFF650PGY/ 4985881972 ENCODE Processing Pipeline 601b6882b8a06bcdb40392e4396d1b9b https://www.encodeproject.org/files/ENCFF131NRQ/@@download/ENCFF131NRQ.bam released s3://encode-public/2020/04/20/d58dff20-d5a6-41ef-b5f2-6260ac2c1f88/ENCFF131NRQ.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF424GGO fastq fastq reads ENCSR785AHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1807'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4520/'], '@type': ['Target', 'Item'], 'name': 'MTF1-human', 'label': 'MTF1', '@id': '/targets/MTF1-human/', 'title': 'MTF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7f46b13-0077-4a09-afa9-404a1c11093d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF450TZO/ 2105318589 Michael Snyder, Stanford 2eaed2f3c656094dd620bb0ba0339f36 SRA:SRR14103790 https://www.encodeproject.org/files/ENCFF424GGO/@@download/ENCFF424GGO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/c4843dad-207c-4dbf-9cc5-3d0977ca8e20/ENCFF424GGO.fastq.gz ENCFF450TZO fastq fastq reads ENCSR785AHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1807'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4520/'], '@type': ['Target', 'Item'], 'name': 'MTF1-human', 'label': 'MTF1', '@id': '/targets/MTF1-human/', 'title': 'MTF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7f46b13-0077-4a09-afa9-404a1c11093d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF424GGO/ 2223622695 Michael Snyder, Stanford aa6d731a1edc664513ce53f58eaa82f0 SRA:SRR14103790 https://www.encodeproject.org/files/ENCFF450TZO/@@download/ENCFF450TZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/21/18a4fa03-ef42-4bcf-83a6-386e410da2bc/ENCFF450TZO.fastq.gz ENCFF426OTL bam bam unfiltered alignments GRCh38 ENCSR785AHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1807'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4520/'], '@type': ['Target', 'Item'], 'name': 'MTF1-human', 'label': 'MTF1', '@id': '/targets/MTF1-human/', 'title': 'MTF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7f46b13-0077-4a09-afa9-404a1c11093d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF424GGO/, /files/ENCFF450TZO/ 4439152110 ENCODE Processing Pipeline 1db31d74c4c81e7334129ff023aacfaf https://www.encodeproject.org/files/ENCFF426OTL/@@download/ENCFF426OTL.bam released s3://encode-public/2020/05/15/8e63db76-156e-4723-8937-1c8bb6b707d8/ENCFF426OTL.bam ENCODE4 v1.4.0 GRCh38 released ENCFF204WBV bam bam alignments GRCh38 ENCSR785AHP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1807'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/4520/'], '@type': ['Target', 'Item'], 'name': 'MTF1-human', 'label': 'MTF1', '@id': '/targets/MTF1-human/', 'title': 'MTF1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd7f46b13-0077-4a09-afa9-404a1c11093d', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF424GGO/, /files/ENCFF450TZO/ 3279833335 ENCODE Processing Pipeline 1cb574781983070ec63699eade1ff639 https://www.encodeproject.org/files/ENCFF204WBV/@@download/ENCFF204WBV.bam released s3://encode-public/2020/05/15/9a18b7d5-c794-4d34-9f51-49b7877d9f0c/ENCFF204WBV.bam ENCODE4 v1.4.0 GRCh38 released ENCFF798RYJ fastq fastq reads ENCSR193DQJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1435'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10363/'], '@type': ['Target', 'Item'], 'name': 'HMG20A-human', 'label': 'HMG20A', '@id': '/targets/HMG20A-human/', 'title': 'HMG20A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6260645e-51e5-4955-bbb4-886d6d689abf', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 151 paired-ended 2 /files/ENCFF615VBM/ 3406561901 Michael Snyder, Stanford ce6200df77c5eb2dca8ca32b58981c8e SRA:SRR14107049 https://www.encodeproject.org/files/ENCFF798RYJ/@@download/ENCFF798RYJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/a254b477-3f54-48dd-99f3-7f83d8f4f2ae/ENCFF798RYJ.fastq.gz mild to moderate bottlenecking, low read depth ENCFF615VBM fastq fastq reads ENCSR193DQJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1435'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10363/'], '@type': ['Target', 'Item'], 'name': 'HMG20A-human', 'label': 'HMG20A', '@id': '/targets/HMG20A-human/', 'title': 'HMG20A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6260645e-51e5-4955-bbb4-886d6d689abf', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 151 paired-ended 1 /files/ENCFF798RYJ/ 2919064543 Michael Snyder, Stanford 3ef53fa5df82274bd9c2dbc4b4a852e9 SRA:SRR14107049 https://www.encodeproject.org/files/ENCFF615VBM/@@download/ENCFF615VBM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/d2bc84b4-54f1-4b97-9763-3adb49902384/ENCFF615VBM.fastq.gz mild to moderate bottlenecking, low read depth ENCFF429QJT bam bam alignments GRCh38 ENCSR193DQJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1435'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10363/'], '@type': ['Target', 'Item'], 'name': 'HMG20A-human', 'label': 'HMG20A', '@id': '/targets/HMG20A-human/', 'title': 'HMG20A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6260645e-51e5-4955-bbb4-886d6d689abf', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 151 /files/ENCFF110MCL/, /files/ENCFF615VBM/, /files/ENCFF798RYJ/ 3398262470 ENCODE Processing Pipeline 4a3d322b62b46680035fa9a0334558f9 https://www.encodeproject.org/files/ENCFF429QJT/@@download/ENCFF429QJT.bam released s3://encode-public/2020/04/21/f5d955b7-1496-4965-bb55-51bf9b35d169/ENCFF429QJT.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF986BTC bam bam unfiltered alignments GRCh38 ENCSR193DQJ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1435'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/10363/'], '@type': ['Target', 'Item'], 'name': 'HMG20A-human', 'label': 'HMG20A', '@id': '/targets/HMG20A-human/', 'title': 'HMG20A (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6260645e-51e5-4955-bbb4-886d6d689abf', 'status': 'released'} DNA formaldehyde 2020-08-03 ENCODE 450-650 1 1_1 151 /files/ENCFF110MCL/, /files/ENCFF615VBM/, /files/ENCFF798RYJ/ 5772810246 ENCODE Processing Pipeline 95558412e36dd9d34082c88e4a35081a https://www.encodeproject.org/files/ENCFF986BTC/@@download/ENCFF986BTC.bam released s3://encode-public/2020/04/21/7b7e917d-932e-49fd-9c94-9f69b860294f/ENCFF986BTC.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, low read depth ENCFF768UBP fastq fastq reads ENCSR316UUM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9519/'], '@type': ['Target', 'Item'], 'name': 'TBPL1-human', 'label': 'TBPL1', '@id': '/targets/TBPL1-human/', 'title': 'TBPL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '982480db-eb5a-412e-90e0-1dc1583b0658', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF187KET/ 2533600346 Michael Snyder, Stanford 31a967c5c79b7f79d5fc94930d74abb2 https://www.encodeproject.org/files/ENCFF768UBP/@@download/ENCFF768UBP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/2f379c24-b8c5-4163-9093-39dd0ca1578d/ENCFF768UBP.fastq.gz mild to moderate bottlenecking ENCFF187KET fastq fastq reads ENCSR316UUM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9519/'], '@type': ['Target', 'Item'], 'name': 'TBPL1-human', 'label': 'TBPL1', '@id': '/targets/TBPL1-human/', 'title': 'TBPL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '982480db-eb5a-412e-90e0-1dc1583b0658', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF768UBP/ 2804904586 Michael Snyder, Stanford 1b3ee2bac1c8192cd42a0b3bc96dd051 https://www.encodeproject.org/files/ENCFF187KET/@@download/ENCFF187KET.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/54cd4f5d-c143-4040-b3cc-14063e0a9dc3/ENCFF187KET.fastq.gz mild to moderate bottlenecking ENCFF621RZW bam bam alignments GRCh38 ENCSR316UUM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9519/'], '@type': ['Target', 'Item'], 'name': 'TBPL1-human', 'label': 'TBPL1', '@id': '/targets/TBPL1-human/', 'title': 'TBPL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '982480db-eb5a-412e-90e0-1dc1583b0658', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF768UBP/, /files/ENCFF187KET/ 3925286516 ENCODE Processing Pipeline b34426f223fe74b4e6149da17459b7a3 https://www.encodeproject.org/files/ENCFF621RZW/@@download/ENCFF621RZW.bam released s3://encode-public/2020/04/21/e682966e-0d00-4e07-91a8-3c9460072636/ENCFF621RZW.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF367CBP bam bam unfiltered alignments GRCh38 ENCSR316UUM Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/9519/'], '@type': ['Target', 'Item'], 'name': 'TBPL1-human', 'label': 'TBPL1', '@id': '/targets/TBPL1-human/', 'title': 'TBPL1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '982480db-eb5a-412e-90e0-1dc1583b0658', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF768UBP/, /files/ENCFF187KET/ 5218792851 ENCODE Processing Pipeline 5327866618f8f9f130a3b66df9ceee94 https://www.encodeproject.org/files/ENCFF367CBP/@@download/ENCFF367CBP.bam released s3://encode-public/2020/04/21/a96ed81c-b09f-46cf-822b-350658e424c6/ENCFF367CBP.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF968BDS fastq fastq reads ENCSR310OPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF343XUY/ 2118247747 Michael Snyder, Stanford c3a19580a021e429e18cdbbeb0ccc013 SRA:SRR14104386 https://www.encodeproject.org/files/ENCFF968BDS/@@download/ENCFF968BDS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/18/41131ee7-8416-4f8a-9a75-6ca835ac7e4e/ENCFF968BDS.fastq.gz mild to moderate bottlenecking missing compliant biosample characterization ENCFF343XUY fastq fastq reads ENCSR310OPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF968BDS/ 2309436114 Michael Snyder, Stanford 9625c78fc80c77d9308daded5ab3ee26 SRA:SRR14104386 https://www.encodeproject.org/files/ENCFF343XUY/@@download/ENCFF343XUY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2019/01/18/2a65c2e8-bac4-4d69-b204-a637aa194cc8/ENCFF343XUY.fastq.gz mild to moderate bottlenecking missing compliant biosample characterization ENCFF672VGI bam bam alignments GRCh38 ENCSR310OPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF968BDS/, /files/ENCFF343XUY/ 3130848237 ENCODE Processing Pipeline 1cc164a62987290119498bd0b96d6a3d https://www.encodeproject.org/files/ENCFF672VGI/@@download/ENCFF672VGI.bam released s3://encode-public/2020/05/15/b69c631e-74a8-4f5a-95b7-b8a6df276e3e/ENCFF672VGI.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking missing compliant biosample characterization ENCFF079SNA bam bam unfiltered alignments GRCh38 ENCSR310OPP Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3164/'], '@type': ['Target', 'Item'], 'name': 'NR4A1-human', 'label': 'NR4A1', '@id': '/targets/NR4A1-human/', 'title': 'NR4A1 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '67f4c463-a2ed-4e94-a4fc-47f66eb85097', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF968BDS/, /files/ENCFF343XUY/ 4114320136 ENCODE Processing Pipeline 948b852c5e6d2ff832f7f902e188c5c8 https://www.encodeproject.org/files/ENCFF079SNA/@@download/ENCFF079SNA.bam released s3://encode-public/2020/05/15/cda0e997-c046-44d0-9ba1-4dd1ea3d7643/ENCFF079SNA.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking missing compliant biosample characterization ENCFF682WTO fastq fastq reads ENCSR121UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF045KKJ/ 1894067170 Michael Snyder, Stanford 5a8cd9cc818c80b9c1557fc95284580f SRA:SRR14105146 https://www.encodeproject.org/files/ENCFF682WTO/@@download/ENCFF682WTO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/4e4699c2-f018-4482-98ea-c51218bdcab8/ENCFF682WTO.fastq.gz mild to moderate bottlenecking ENCFF045KKJ fastq fastq reads ENCSR121UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF682WTO/ 2281870545 Michael Snyder, Stanford 685b52e21b5339c649d72ff44519a1e5 SRA:SRR14105146 https://www.encodeproject.org/files/ENCFF045KKJ/@@download/ENCFF045KKJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/12/20/27317499-7b02-4318-8f3b-b4124bd1000f/ENCFF045KKJ.fastq.gz mild to moderate bottlenecking ENCFF090JJK bam bam alignments GRCh38 ENCSR121UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF682WTO/, /files/ENCFF045KKJ/ 3027603277 ENCODE Processing Pipeline 2e301bccaf0e9b7c988fd9c37b0ff139 https://www.encodeproject.org/files/ENCFF090JJK/@@download/ENCFF090JJK.bam released s3://encode-public/2020/04/20/e3a7dd71-6bf2-4f42-b11e-d6acd449a27c/ENCFF090JJK.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF063RUF bam bam unfiltered alignments GRCh38 ENCSR121UHI Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/118472/'], '@type': ['Target', 'Item'], 'name': 'ZNF511-human', 'label': 'ZNF511', '@id': '/targets/ZNF511-human/', 'title': 'ZNF511 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'ee88fe7c-6890-40f5-93b0-4be9b49874d0', 'status': 'released'} DNA 2020-08-03 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF110MCL/, /files/ENCFF682WTO/, /files/ENCFF045KKJ/ 4163476828 ENCODE Processing Pipeline 7d04cfc26e2eb97afafbf274af607cb1 https://www.encodeproject.org/files/ENCFF063RUF/@@download/ENCFF063RUF.bam released s3://encode-public/2020/04/20/0615b63e-967c-427f-a396-3ac3c23aef2d/ENCFF063RUF.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF269RDP fastq fastq reads ENCSR871LVN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3171/'], '@type': ['Target', 'Item'], 'name': 'FOXA3-human', 'label': 'FOXA3', '@id': '/targets/FOXA3-human/', 'title': 'FOXA3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '419a2214-ad3f-42ce-a604-d65f49f860a6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF648IQL/ 2383826983 Michael Snyder, Stanford 1d5af6869ef7992eea1d29aa874f4564 https://www.encodeproject.org/files/ENCFF269RDP/@@download/ENCFF269RDP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/10ab3e0e-bd74-49ad-b867-3395a27894b4/ENCFF269RDP.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF648IQL fastq fastq reads ENCSR871LVN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3171/'], '@type': ['Target', 'Item'], 'name': 'FOXA3-human', 'label': 'FOXA3', '@id': '/targets/FOXA3-human/', 'title': 'FOXA3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '419a2214-ad3f-42ce-a604-d65f49f860a6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF269RDP/ 2980440268 Michael Snyder, Stanford 0a57076a4079a0159cb9e6c2d1517159 https://www.encodeproject.org/files/ENCFF648IQL/@@download/ENCFF648IQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/21fe0112-d218-4ab8-933a-dbdc858bd317/ENCFF648IQL.fastq.gz mild to moderate bottlenecking, moderate library complexity ENCFF337LLO bam bam alignments GRCh38 ENCSR871LVN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3171/'], '@type': ['Target', 'Item'], 'name': 'FOXA3-human', 'label': 'FOXA3', '@id': '/targets/FOXA3-human/', 'title': 'FOXA3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '419a2214-ad3f-42ce-a604-d65f49f860a6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF269RDP/, /files/ENCFF648IQL/ 3435671137 ENCODE Processing Pipeline 0e9a7068b69f4a0556f4f89bf3433ae9 https://www.encodeproject.org/files/ENCFF337LLO/@@download/ENCFF337LLO.bam released s3://encode-public/2020/04/21/f9ae4a3c-68a9-4492-b2b1-041687c16ecf/ENCFF337LLO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF015UOO bam bam unfiltered alignments GRCh38 ENCSR871LVN Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/3171/'], '@type': ['Target', 'Item'], 'name': 'FOXA3-human', 'label': 'FOXA3', '@id': '/targets/FOXA3-human/', 'title': 'FOXA3 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '419a2214-ad3f-42ce-a604-d65f49f860a6', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF269RDP/, /files/ENCFF648IQL/ 5137780826 ENCODE Processing Pipeline ab1f031d05421b636d0cfc0281f5eef2 https://www.encodeproject.org/files/ENCFF015UOO/@@download/ENCFF015UOO.bam released s3://encode-public/2020/04/21/4d5d13af-1af5-45df-819b-104916b4b187/ENCFF015UOO.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF268GVY fastq fastq reads ENCSR459TUR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1158'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57507/'], '@type': ['Target', 'Item'], 'name': 'ZNF608-human', 'label': 'ZNF608', '@id': '/targets/ZNF608-human/', 'title': 'ZNF608 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6a248d2a-a99a-45ff-96ab-783917ebfdaf', 'status': 'released'} DNA 2021-07-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 1 /files/ENCFF691IQD/ 1841242376 Michael Snyder, Stanford 236ee6bc60a7601be50ebf5948e5cca5 https://www.encodeproject.org/files/ENCFF268GVY/@@download/ENCFF268GVY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/10/08/d3d949af-7bc5-4433-b3e8-6b85693589a1/ENCFF268GVY.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF691IQD fastq fastq reads ENCSR459TUR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1158'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57507/'], '@type': ['Target', 'Item'], 'name': 'ZNF608-human', 'label': 'ZNF608', '@id': '/targets/ZNF608-human/', 'title': 'ZNF608 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6a248d2a-a99a-45ff-96ab-783917ebfdaf', 'status': 'released'} DNA 2021-07-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 paired-ended 2 /files/ENCFF268GVY/ 2104668853 Michael Snyder, Stanford 64430aa4f3a16f68d022bb12469b22c6 https://www.encodeproject.org/files/ENCFF691IQD/@@download/ENCFF691IQD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2020/10/08/6c9d9e70-d90b-4a8d-ad5c-67e6934c63a5/ENCFF691IQD.fastq.gz mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF508JIR bam bam unfiltered alignments GRCh38 ENCSR459TUR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1158'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57507/'], '@type': ['Target', 'Item'], 'name': 'ZNF608-human', 'label': 'ZNF608', '@id': '/targets/ZNF608-human/', 'title': 'ZNF608 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6a248d2a-a99a-45ff-96ab-783917ebfdaf', 'status': 'released'} DNA 2021-07-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF268GVY/, /files/ENCFF110MCL/, /files/ENCFF691IQD/ 3774308270 ENCODE Processing Pipeline 7abb82ca4018b657e83151e88a3b9add https://www.encodeproject.org/files/ENCFF508JIR/@@download/ENCFF508JIR.bam released s3://encode-public/2021/07/08/bae96f38-bf50-4ac7-a9ee-f240089f8636/ENCFF508JIR.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF530JWH bam bam alignments GRCh38 ENCSR459TUR Control ChIP-seq /human-donors/ENCDO000ABD/ EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1158'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/57507/'], '@type': ['Target', 'Item'], 'name': 'ZNF608-human', 'label': 'ZNF608', '@id': '/targets/ZNF608-human/', 'title': 'ZNF608 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6a248d2a-a99a-45ff-96ab-783917ebfdaf', 'status': 'released'} DNA 2021-07-15 ENCODE sonication (Bioruptor Pico) 250-450 1 1_1 100 /files/ENCFF268GVY/, /files/ENCFF110MCL/, /files/ENCFF691IQD/ 2443022968 ENCODE Processing Pipeline 56f2afe894f0d694281adee4a9fe4e9f https://www.encodeproject.org/files/ENCFF530JWH/@@download/ENCFF530JWH.bam released s3://encode-public/2021/07/08/2e0a5415-c728-422a-80f5-437848011002/ENCFF530JWH.bam ENCODE4 v1.9.0 GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF976NJZ fastq fastq reads ENCSR506DBU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6945/'], '@type': ['Target', 'Item'], 'name': 'MLX-human', 'label': 'MLX', '@id': '/targets/MLX-human/', 'title': 'MLX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0ee67e5-287f-412b-a935-4d4e6020b905', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF929VEW/ 1896262558 Michael Snyder, Stanford 9b76a8428e05b2515e9c5da4482763e9 https://www.encodeproject.org/files/ENCFF976NJZ/@@download/ENCFF976NJZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/dac96566-0588-4b79-b9ab-fd027a28068b/ENCFF976NJZ.fastq.gz ENCFF929VEW fastq fastq reads ENCSR506DBU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6945/'], '@type': ['Target', 'Item'], 'name': 'MLX-human', 'label': 'MLX', '@id': '/targets/MLX-human/', 'title': 'MLX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0ee67e5-287f-412b-a935-4d4e6020b905', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF976NJZ/ 2282341255 Michael Snyder, Stanford 2c63ba6ccb0cfeb774dc2fbe57596010 https://www.encodeproject.org/files/ENCFF929VEW/@@download/ENCFF929VEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/07/19/7e4bbce5-3af8-403b-a063-f490674c19bd/ENCFF929VEW.fastq.gz ENCFF904HBF bam bam unfiltered alignments GRCh38 ENCSR506DBU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6945/'], '@type': ['Target', 'Item'], 'name': 'MLX-human', 'label': 'MLX', '@id': '/targets/MLX-human/', 'title': 'MLX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0ee67e5-287f-412b-a935-4d4e6020b905', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF976NJZ/, /files/ENCFF929VEW/ 4445068837 ENCODE Processing Pipeline 54251007c9a39e23c65961a06749fee4 https://www.encodeproject.org/files/ENCFF904HBF/@@download/ENCFF904HBF.bam released s3://encode-public/2020/04/21/f208f590-c5eb-41d2-8aa0-007163a01cdd/ENCFF904HBF.bam ENCODE4 v1.4.0 GRCh38 released ENCFF803SDE bam bam alignments GRCh38 ENCSR506DBU Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': [], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/6945/'], '@type': ['Target', 'Item'], 'name': 'MLX-human', 'label': 'MLX', '@id': '/targets/MLX-human/', 'title': 'MLX (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': 'd0ee67e5-287f-412b-a935-4d4e6020b905', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF976NJZ/, /files/ENCFF929VEW/ 3298142843 ENCODE Processing Pipeline 6a32f9ac81b364dd61134d9ef82b6b62 https://www.encodeproject.org/files/ENCFF803SDE/@@download/ENCFF803SDE.bam released s3://encode-public/2020/04/21/d660e262-1e04-456b-a302-483f4fbbaec7/ENCFF803SDE.bam ENCODE4 v1.4.0 GRCh38 released ENCFF051STR fastq fastq reads ENCSR572XHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1542'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7988/'], '@type': ['Target', 'Item'], 'name': 'ZNF212-human', 'label': 'ZNF212', '@id': '/targets/ZNF212-human/', 'title': 'ZNF212 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6977b998-088b-4770-8c54-76abb9c700cf', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 1 /files/ENCFF536KTA/ 2527672390 Michael Snyder, Stanford 7c4bf01bbd07c4a518ec8004d8a61c13 https://www.encodeproject.org/files/ENCFF051STR/@@download/ENCFF051STR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/5fe36ffb-4496-4861-9d4d-74224343b6b1/ENCFF051STR.fastq.gz mild to moderate bottlenecking ENCFF536KTA fastq fastq reads ENCSR572XHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1542'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7988/'], '@type': ['Target', 'Item'], 'name': 'ZNF212-human', 'label': 'ZNF212', '@id': '/targets/ZNF212-human/', 'title': 'ZNF212 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6977b998-088b-4770-8c54-76abb9c700cf', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 paired-ended 2 /files/ENCFF051STR/ 2778051857 Michael Snyder, Stanford a1c8f60c370f297b04657e212dc0253f https://www.encodeproject.org/files/ENCFF536KTA/@@download/ENCFF536KTA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/01/12/75c6695d-bf14-4d47-9243-8c5eae786b57/ENCFF536KTA.fastq.gz mild to moderate bottlenecking ENCFF407WNL bam bam unfiltered alignments GRCh38 ENCSR572XHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1542'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7988/'], '@type': ['Target', 'Item'], 'name': 'ZNF212-human', 'label': 'ZNF212', '@id': '/targets/ZNF212-human/', 'title': 'ZNF212 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6977b998-088b-4770-8c54-76abb9c700cf', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF051STR/, /files/ENCFF536KTA/ 5101111149 ENCODE Processing Pipeline 055cf4eb2793a1ee46683ea95710d77b https://www.encodeproject.org/files/ENCFF407WNL/@@download/ENCFF407WNL.bam released s3://encode-public/2020/04/21/18b4c98b-a394-407b-933c-b84cebb573ee/ENCFF407WNL.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking ENCFF971KMV bam bam alignments GRCh38 ENCSR572XHZ Control ChIP-seq /human-donors/ENCDO000AAD/ EFO:0002067 K562 cell line Homo sapiens CRISPR insertion {'schema_version': '14', 'aliases': ['michael-snyder:TS-1542'], 'organism': {'schema_version': '6', '@type': ['Organism', 'Item'], 'name': 'human', 'taxon_id': '9606', 'scientific_name': 'Homo sapiens', '@id': '/organisms/human/', 'uuid': '7745b647-ff15-4ff3-9ced-b897d4e2983c', 'status': 'released'}, 'genes': ['/genes/7988/'], '@type': ['Target', 'Item'], 'name': 'ZNF212-human', 'label': 'ZNF212', '@id': '/targets/ZNF212-human/', 'title': 'ZNF212 (Homo sapiens)', 'investigated_as': ['transcription factor'], 'uuid': '6977b998-088b-4770-8c54-76abb9c700cf', 'status': 'released'} DNA formaldehyde 2022-01-20 ENCODE 450-650 1 1_1 101 /files/ENCFF110MCL/, /files/ENCFF051STR/, /files/ENCFF536KTA/ 3655638529 ENCODE Processing Pipeline 236d510c71db6205d680cc4e587a2767 https://www.encodeproject.org/files/ENCFF971KMV/@@download/ENCFF971KMV.bam released s3://encode-public/2020/04/21/cd16ad61-8c25-45bc-828d-b5957e83fdbd/ENCFF971KMV.bam ENCODE4 v1.4.0 GRCh38 released mild to moderate bottlenecking